# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|289579697|ref|YP_003478163.1| - 1.7e-18 66.3 0.1 3.6e-18 65.3 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|289579697|ref|YP_003478163.1| - 7e-13 49.0 0.1 2.4e-12 47.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289579697|ref|YP_003478163.1| - 2.2e-08 34.7 1.0 8.5e-08 32.8 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|289579697|ref|YP_003478163.1| - 3.8e-05 24.1 0.0 0.00012 22.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|289579697|ref|YP_003478163.1| - 0.0002 21.4 0.2 0.0017 18.3 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|289579697|ref|YP_003478163.1| - 0.0008 19.1 0.0 0.0023 17.6 0.0 1.8 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_32 PF13654.6 gi|289579697|ref|YP_003478163.1| - 0.0012 17.8 0.5 0.26 10.1 0.5 2.4 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|289579697|ref|YP_003478163.1| - 0.0016 17.6 0.0 0.0032 16.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|289579697|ref|YP_003478163.1| - 0.0021 17.3 0.0 0.004 16.4 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.16 gi|289579697|ref|YP_003478163.1| - 0.0028 17.1 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein PIF1 PF05970.14 gi|289579697|ref|YP_003478163.1| - 0.0048 16.1 0.1 0.019 14.1 0.1 2.0 1 1 0 1 1 1 1 PIF1-like helicase ATP-synt_ab PF00006.25 gi|289579697|ref|YP_003478163.1| - 0.0054 16.4 0.0 0.0093 15.6 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|289579697|ref|YP_003478163.1| - 0.011 15.1 0.0 0.05 13.0 0.0 2.0 2 1 0 2 2 2 0 Bacterial TniB protein DUF87 PF01935.17 gi|289579697|ref|YP_003478163.1| - 0.02 15.0 1.4 0.077 13.1 0.0 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|289579697|ref|YP_003478163.1| - 0.038 13.7 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Arf PF00025.21 gi|289579697|ref|YP_003478163.1| - 0.046 13.2 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family PCP_red PF08369.10 gi|289579697|ref|YP_003478163.1| - 0.051 13.8 0.2 0.18 12.1 0.2 2.0 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit ResIII PF04851.15 gi|289579697|ref|YP_003478163.1| - 0.074 13.1 0.3 0.32 11.0 0.0 2.1 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|289579697|ref|YP_003478163.1| - 0.081 12.7 0.7 4.2 7.1 0.3 2.6 1 1 1 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|289579697|ref|YP_003478163.1| - 0.099 13.2 0.2 0.36 11.3 0.0 2.1 2 1 0 2 2 2 0 ABC transporter AAA_assoc_2 PF16193.5 gi|289579697|ref|YP_003478163.1| - 0.12 12.7 1.3 0.33 11.3 0.8 2.0 1 1 1 2 2 2 0 AAA C-terminal domain AAA_7 PF12775.7 gi|289579697|ref|YP_003478163.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|289579697|ref|YP_003478163.1| - 0.18 12.2 0.0 0.72 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Pterin_bind PF00809.22 gi|289579698|ref|YP_003478164.1| - 1.9e-41 142.4 0.0 2.6e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.18 gi|289579699|ref|YP_003478165.1| - 2.2e-19 69.8 0.0 3e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 THF_DHG_CYH_C PF02882.19 gi|289579699|ref|YP_003478165.1| - 0.065 12.5 0.4 0.097 12.0 0.4 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tubulin PF00091.25 gi|289579700|ref|YP_003478166.1| - 7.4e-29 101.4 0.1 1.4e-28 100.4 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|289579700|ref|YP_003478166.1| - 0.0075 15.5 0.2 0.011 14.9 0.2 1.4 1 0 0 1 1 1 1 Tubulin like SBP_bac_5 PF00496.22 gi|289579701|ref|YP_003478167.1| - 1.2e-43 149.6 0.0 2e-40 139.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PAP2_3 PF14378.6 gi|289579702|ref|YP_003478168.1| - 3.4e-19 69.3 12.7 3.4e-19 69.3 12.7 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|289579702|ref|YP_003478168.1| - 1.2e-12 47.7 2.5 1.2e-12 47.7 2.5 2.7 2 1 1 3 3 3 1 PAP2 superfamily DUF1751 PF08551.10 gi|289579702|ref|YP_003478168.1| - 0.5 11.0 0.1 0.5 11.0 0.1 2.9 3 1 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) HalOD1 PF18545.1 gi|289579703|ref|YP_003478169.1| - 2.4e-23 82.2 1.0 1.3e-14 54.2 0.2 2.2 2 0 0 2 2 2 2 Halobacterial output domain 1 AP_endonuc_2 PF01261.24 gi|289579704|ref|YP_003478170.1| - 3.8e-33 114.7 2.2 7.4e-33 113.8 2.1 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|289579704|ref|YP_003478170.1| - 2.1e-21 75.4 0.0 4.1e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus GFO_IDH_MocA PF01408.22 gi|289579705|ref|YP_003478171.1| - 3e-26 92.6 0.0 4.6e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|289579705|ref|YP_003478171.1| - 6.9e-10 39.0 0.0 1.5e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|289579705|ref|YP_003478171.1| - 3.7e-06 26.4 0.1 7e-06 25.5 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|289579705|ref|YP_003478171.1| - 7.9e-05 23.3 0.0 0.00013 22.5 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 gi|289579705|ref|YP_003478171.1| - 0.00014 22.4 0.0 0.00028 21.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|289579705|ref|YP_003478171.1| - 0.00081 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|289579705|ref|YP_003478171.1| - 0.002 18.3 0.0 0.0034 17.6 0.0 1.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_3 PF03447.16 gi|289579705|ref|YP_003478171.1| - 0.003 18.2 0.0 0.0057 17.3 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|289579705|ref|YP_003478171.1| - 0.047 14.1 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289579705|ref|YP_003478171.1| - 0.083 13.2 0.5 0.33 11.2 0.1 2.2 2 1 0 2 2 2 0 TrkA-N domain ABC_tran PF00005.27 gi|289579706|ref|YP_003478172.1| - 4.2e-33 114.8 0.0 8.1e-33 113.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|289579706|ref|YP_003478172.1| - 7.3e-10 39.5 0.1 2.2e-09 38.0 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|289579706|ref|YP_003478172.1| - 2.3e-06 27.7 0.0 0.0054 16.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|289579706|ref|YP_003478172.1| - 1.7e-05 24.9 0.4 0.00025 21.1 0.4 2.5 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|289579706|ref|YP_003478172.1| - 0.00017 21.1 0.2 0.0014 18.1 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|289579706|ref|YP_003478172.1| - 0.0031 17.4 0.1 0.011 15.6 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|289579706|ref|YP_003478172.1| - 0.0033 17.2 0.0 0.68 9.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|289579706|ref|YP_003478172.1| - 0.0069 16.8 0.0 0.018 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|289579706|ref|YP_003478172.1| - 0.0074 16.0 0.0 0.039 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain TOBE PF03459.17 gi|289579706|ref|YP_003478172.1| - 0.0075 16.5 0.0 0.91 9.9 0.0 3.2 2 1 0 2 2 2 1 TOBE domain AAA_29 PF13555.6 gi|289579706|ref|YP_003478172.1| - 0.0082 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|289579706|ref|YP_003478172.1| - 0.021 14.8 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|289579706|ref|YP_003478172.1| - 0.021 15.1 0.4 0.049 13.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|289579706|ref|YP_003478172.1| - 0.029 14.8 0.4 0.11 12.9 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|289579706|ref|YP_003478172.1| - 0.031 14.4 0.7 0.1 12.7 0.7 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|289579706|ref|YP_003478172.1| - 0.048 14.1 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CysA_C_terminal PF17850.1 gi|289579706|ref|YP_003478172.1| - 0.05 14.2 0.0 0.18 12.4 0.0 2.1 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_5 PF07728.14 gi|289579706|ref|YP_003478172.1| - 0.062 13.3 0.3 0.42 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|289579706|ref|YP_003478172.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|289579707|ref|YP_003478173.1| - 1.1e-10 41.6 18.5 1.1e-10 41.6 18.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289579708|ref|YP_003478174.1| - 3.4e-17 62.8 20.0 3.4e-17 62.8 20.0 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ThiW PF09512.10 gi|289579708|ref|YP_003478174.1| - 0.35 11.0 11.6 0.15 12.2 5.3 2.6 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) TraP PF07296.11 gi|289579708|ref|YP_003478174.1| - 5.1 6.2 6.9 3.7 6.7 0.3 2.5 3 0 0 3 3 3 0 TraP protein SBP_bac_8 PF13416.6 gi|289579709|ref|YP_003478175.1| - 1.1e-15 58.3 0.0 1.6e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289579709|ref|YP_003478175.1| - 3.4e-09 37.1 0.1 2.7e-08 34.1 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.8 gi|289579710|ref|YP_003478176.1| - 5e-68 228.8 1.4 7.7e-68 228.1 1.4 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|289579710|ref|YP_003478176.1| - 3.5e-21 74.8 0.0 1.1e-20 73.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|289579710|ref|YP_003478176.1| - 5.1e-07 29.5 0.1 2.1e-06 27.5 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289579710|ref|YP_003478176.1| - 1.6e-06 28.1 0.2 7.2e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289579710|ref|YP_003478176.1| - 2.4e-05 24.1 0.0 0.00012 21.8 0.0 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289579710|ref|YP_003478176.1| - 4.3e-05 23.0 0.1 0.0018 17.8 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|289579710|ref|YP_003478176.1| - 0.0011 18.4 0.1 0.008 15.7 0.0 2.4 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|289579710|ref|YP_003478176.1| - 0.0027 17.5 0.0 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|289579710|ref|YP_003478176.1| - 0.0065 16.8 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|289579710|ref|YP_003478176.1| - 0.035 14.0 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.9 gi|289579710|ref|YP_003478176.1| - 0.042 14.0 0.0 0.096 12.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4 PF04545.16 gi|289579710|ref|YP_003478176.1| - 0.068 12.7 0.0 0.58 9.7 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_9 PF08221.11 gi|289579710|ref|YP_003478176.1| - 0.078 13.1 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_37 PF13744.6 gi|289579710|ref|YP_003478176.1| - 0.089 12.8 0.0 0.36 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|289579710|ref|YP_003478176.1| - 0.15 12.1 0.4 23 5.1 0.0 3.7 3 1 1 4 4 4 0 Winged helix-turn helix GCR1_C PF12550.8 gi|289579710|ref|YP_003478176.1| - 0.17 12.2 0.0 1 9.7 0.0 2.2 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes Myosin_N PF02736.19 gi|289579710|ref|YP_003478176.1| - 0.43 10.4 2.6 1 9.2 2.6 1.7 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain MS_channel PF00924.18 gi|289579711|ref|YP_003478177.1| - 6.2e-36 123.9 0.7 6.2e-36 123.9 0.7 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|289579711|ref|YP_003478177.1| - 0.00028 20.8 0.2 0.00028 20.8 0.2 2.3 2 0 0 2 2 2 1 Conserved TM helix EI24 PF07264.11 gi|289579711|ref|YP_003478177.1| - 0.014 15.7 2.5 0.053 13.8 2.5 1.8 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF3611 PF12263.8 gi|289579711|ref|YP_003478177.1| - 0.04 13.8 3.5 0.076 12.9 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) DUF3810 PF12725.7 gi|289579711|ref|YP_003478177.1| - 0.14 11.4 0.2 0.25 10.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Peptidase_A24 PF01478.18 gi|289579711|ref|YP_003478177.1| - 0.15 12.5 4.5 0.27 11.6 4.5 1.4 1 0 0 1 1 1 0 Type IV leader peptidase family Usp PF00582.26 gi|289579712|ref|YP_003478178.1| - 5.4e-10 39.9 1.1 5.1e-08 33.5 1.1 2.1 1 1 0 1 1 1 1 Universal stress protein family HisKA_2 PF07568.12 gi|289579712|ref|YP_003478178.1| - 0.065 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase zf-FPG_IleRS PF06827.14 gi|289579713|ref|YP_003478179.1| - 0.039 13.8 0.9 5 7.1 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zf_RING PF16744.5 gi|289579713|ref|YP_003478179.1| - 0.08 13.1 0.2 0.08 13.1 0.2 1.7 1 1 1 2 2 2 0 KIAA1045 RING finger zf-RanBP PF00641.18 gi|289579713|ref|YP_003478179.1| - 0.13 11.6 4.3 0.61 9.5 4.3 1.9 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Aminotran_5 PF00266.19 gi|289579715|ref|YP_003478181.1| - 7.2e-35 120.6 0.0 8.8e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|289579715|ref|YP_003478181.1| - 0.00081 18.8 0.2 0.0013 18.1 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|289579715|ref|YP_003478181.1| - 0.0029 16.2 0.0 0.0041 15.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Dodecin PF07311.12 gi|289579716|ref|YP_003478182.1| - 2.7e-23 82.0 0.6 3.1e-23 81.8 0.6 1.0 1 0 0 1 1 1 1 Dodecin Fe-S_biosyn PF01521.20 gi|289579717|ref|YP_003478183.1| - 1.9e-18 66.7 0.0 2.1e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Histidinol_dh PF00815.20 gi|289579719|ref|YP_003478185.1| - 4.9e-159 529.7 3.6 5.9e-159 529.5 3.6 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Pilosulin PF17499.2 gi|289579719|ref|YP_003478185.1| - 2.3 8.5 5.0 1.2 9.4 2.0 2.0 2 0 0 2 2 2 0 Ant venom peptides DUF2206 PF09971.9 gi|289579720|ref|YP_003478186.1| - 0.12 11.1 0.4 0.13 11.0 0.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) DUF3149 PF11346.8 gi|289579720|ref|YP_003478186.1| - 0.53 9.9 4.5 1.1 9.0 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) Pyr_redox_2 PF07992.14 gi|289579722|ref|YP_003478188.1| - 8.7e-29 100.7 0.0 1.1e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289579722|ref|YP_003478188.1| - 5e-13 49.0 0.2 4.7e-08 32.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289579722|ref|YP_003478188.1| - 1.4e-07 31.0 3.5 4.4e-06 26.1 0.9 2.5 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|289579722|ref|YP_003478188.1| - 2.5e-07 30.6 1.8 8.6e-06 25.6 1.2 2.5 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|289579722|ref|YP_003478188.1| - 7.8e-06 26.4 0.1 0.033 14.7 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|289579722|ref|YP_003478188.1| - 1.1e-05 24.9 1.1 2.4e-05 23.9 1.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|289579722|ref|YP_003478188.1| - 4e-05 22.9 0.6 8.1e-05 21.9 0.6 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|289579722|ref|YP_003478188.1| - 5.3e-05 22.1 0.3 9e-05 21.3 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|289579722|ref|YP_003478188.1| - 8.6e-05 21.9 1.9 0.0002 20.7 0.6 1.9 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|289579722|ref|YP_003478188.1| - 0.00013 22.1 0.2 0.00031 20.9 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|289579722|ref|YP_003478188.1| - 0.0059 15.9 0.1 0.012 14.9 0.1 1.4 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|289579722|ref|YP_003478188.1| - 0.014 14.7 0.1 0.022 14.1 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|289579722|ref|YP_003478188.1| - 0.023 13.8 0.3 0.036 13.1 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|289579722|ref|YP_003478188.1| - 0.34 9.7 0.7 0.62 8.8 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|289579723|ref|YP_003478189.1| - 2.2e-09 36.9 0.0 2e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289579723|ref|YP_003478189.1| - 3.2e-08 33.6 1.7 0.0037 16.9 0.0 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289579723|ref|YP_003478189.1| - 1.5e-06 27.2 0.2 0.00045 19.0 0.9 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|289579723|ref|YP_003478189.1| - 3.2e-06 26.7 0.2 0.0052 16.1 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|289579723|ref|YP_003478189.1| - 4.1e-06 26.4 0.0 6.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|289579723|ref|YP_003478189.1| - 6.4e-05 22.0 0.4 0.012 14.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|289579723|ref|YP_003478189.1| - 0.00013 22.0 0.4 0.29 11.1 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|289579723|ref|YP_003478189.1| - 0.00016 21.8 0.7 0.00051 20.2 0.7 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|289579723|ref|YP_003478189.1| - 0.00021 20.5 4.5 0.00062 18.9 0.3 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|289579723|ref|YP_003478189.1| - 0.00032 19.9 0.2 0.00052 19.2 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|289579723|ref|YP_003478189.1| - 0.023 14.0 0.2 0.035 13.4 0.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|289579723|ref|YP_003478189.1| - 0.11 11.6 0.1 1.5 7.8 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|289579723|ref|YP_003478189.1| - 0.2 10.9 0.0 0.46 9.7 0.0 1.6 1 0 0 1 1 1 0 Thi4 family 2-Hacid_dh_C PF02826.19 gi|289579724|ref|YP_003478190.1| - 7.7e-55 185.0 0.0 1.1e-54 184.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|289579724|ref|YP_003478190.1| - 6.1e-11 42.1 0.0 7.9e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ThiF PF00899.21 gi|289579724|ref|YP_003478190.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.6 gi|289579724|ref|YP_003478190.1| - 0.013 15.9 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|289579724|ref|YP_003478190.1| - 0.017 15.7 0.0 0.034 14.7 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF4440 PF14534.6 gi|289579724|ref|YP_003478190.1| - 0.018 15.4 0.0 0.25 11.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) IlvN PF07991.12 gi|289579724|ref|YP_003478190.1| - 0.026 14.1 0.0 0.055 13.0 0.0 1.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF2313 PF10076.9 gi|289579724|ref|YP_003478190.1| - 0.052 13.4 0.0 5.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2313) NAD_binding_2 PF03446.15 gi|289579724|ref|YP_003478190.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Usp PF00582.26 gi|289579725|ref|YP_003478191.1| - 5.2e-09 36.8 0.2 5.9e-09 36.6 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family HGD-D PF06050.13 gi|289579725|ref|YP_003478191.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component RNA_pol PF00940.19 gi|289579725|ref|YP_003478191.1| - 0.24 10.2 0.0 7.6 5.3 0.0 2.0 1 1 1 2 2 2 0 DNA-dependent RNA polymerase HTH_20 PF12840.7 gi|289579726|ref|YP_003478192.1| - 0.013 15.6 0.5 0.039 14.0 0.5 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Semialdhyde_dh PF01118.24 gi|289579727|ref|YP_003478193.1| - 4.9e-33 114.1 0.0 8.1e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|289579727|ref|YP_003478193.1| - 4.2e-31 108.5 0.0 5.9e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DXP_reductoisom PF02670.16 gi|289579727|ref|YP_003478193.1| - 0.00017 22.3 0.0 0.00036 21.3 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.20 gi|289579727|ref|YP_003478193.1| - 0.0003 20.9 0.0 0.0005 20.2 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|289579727|ref|YP_003478193.1| - 0.0093 16.2 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|289579727|ref|YP_003478193.1| - 0.039 14.8 0.0 0.069 14.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|289579727|ref|YP_003478193.1| - 0.07 12.7 0.0 0.95 9.0 0.0 2.2 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Ni_hydr_CYTB PF01292.20 gi|289579728|ref|YP_003478194.1| - 0.016 14.8 0.6 0.02 14.5 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Trp_oprn_chp PF09534.10 gi|289579728|ref|YP_003478194.1| - 0.11 12.3 7.0 0.17 11.7 7.0 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3810 PF12725.7 gi|289579728|ref|YP_003478194.1| - 0.13 11.6 0.1 0.14 11.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) YtpI PF14007.6 gi|289579728|ref|YP_003478194.1| - 0.22 11.7 4.2 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 YtpI-like protein Ribosomal_S17e PF00833.18 gi|289579729|ref|YP_003478195.1| - 1.9e-12 47.2 0.1 2.3e-12 46.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF447 PF04289.12 gi|289579730|ref|YP_003478196.1| - 3.4e-35 121.4 0.0 4e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|289579731|ref|YP_003478197.1| - 1.3e-67 228.4 5.9 1.5e-67 228.2 5.9 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase HhH-GPD PF00730.25 gi|289579732|ref|YP_003478198.1| - 3.1e-13 50.1 0.0 4.8e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|289579732|ref|YP_003478198.1| - 3.8e-08 32.8 0.0 7.9e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Pilin_N PF07790.11 gi|289579733|ref|YP_003478199.1| - 7e-10 39.7 0.3 0.0095 16.8 0.0 4.4 4 0 0 4 4 4 3 Archaeal Type IV pilin, N-terminal TOBE_2 PF08402.10 gi|289579733|ref|YP_003478199.1| - 8.2 6.7 11.4 12 6.2 0.1 5.7 7 1 0 7 7 7 0 TOBE domain SAPS PF04499.15 gi|289579735|ref|YP_003478201.1| - 1.1 7.9 5.5 1.2 7.8 5.5 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein MTBP_N PF14918.6 gi|289579735|ref|YP_003478201.1| - 4.4 6.7 7.3 2.1 7.8 0.3 2.1 1 1 1 2 2 2 0 MDM2-binding N6_N4_Mtase PF01555.18 gi|289579736|ref|YP_003478202.1| - 6.9e-33 114.3 0.0 8.6e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|289579736|ref|YP_003478202.1| - 0.084 12.6 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 G_glu_transpept PF01019.21 gi|289579737|ref|YP_003478203.1| - 3.8e-137 458.2 0.0 5e-137 457.8 0.0 1.2 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase GAF_2 PF13185.6 gi|289579738|ref|YP_003478204.1| - 9.2e-33 113.5 2.7 1.4e-18 67.5 0.2 3.2 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|289579738|ref|YP_003478204.1| - 5.8e-25 87.7 11.9 1.9e-12 47.4 0.3 4.8 3 1 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|289579738|ref|YP_003478204.1| - 1e-19 70.1 0.0 3.2e-19 68.5 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|289579738|ref|YP_003478204.1| - 1.7e-18 66.8 0.0 1.3e-05 25.4 0.0 3.7 3 0 0 3 3 3 3 PAS domain BAT PF15915.5 gi|289579738|ref|YP_003478204.1| - 1.4e-17 64.0 12.2 1.4e-17 64.0 12.2 3.9 5 0 0 5 5 5 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|289579738|ref|YP_003478204.1| - 8.8e-17 61.1 0.0 0.00085 19.3 0.0 4.2 3 1 0 3 3 3 3 PAS fold GAF_3 PF13492.6 gi|289579738|ref|YP_003478204.1| - 1.4e-13 51.3 0.1 2.7e-05 24.5 0.0 2.9 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|289579738|ref|YP_003478204.1| - 1.2e-10 42.1 0.2 0.00014 22.5 0.0 3.2 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.7 gi|289579738|ref|YP_003478204.1| - 2.2e-09 37.1 0.7 0.013 15.5 0.1 4.0 3 0 0 3 3 3 2 PAS domain Sigma70_r4 PF04545.16 gi|289579738|ref|YP_003478204.1| - 6.8e-05 22.3 0.3 0.00071 19.0 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 PAS_3 PF08447.12 gi|289579738|ref|YP_003478204.1| - 0.00026 21.2 0.0 0.0032 17.7 0.0 2.9 2 0 0 2 2 2 1 PAS fold T5orf172 PF10544.9 gi|289579738|ref|YP_003478204.1| - 0.082 13.5 0.2 26 5.4 0.0 3.3 3 0 0 3 3 3 0 T5orf172 domain Sigma70_r4_2 PF08281.12 gi|289579738|ref|YP_003478204.1| - 0.099 12.3 0.0 1.9 8.2 0.0 2.8 1 1 0 1 1 1 0 Sigma-70, region 4 Radial_spoke_3 PF06098.11 gi|289579738|ref|YP_003478204.1| - 0.48 9.6 4.7 3.4 6.9 0.0 2.9 2 0 0 2 2 2 0 Radial spoke protein 3 HalOD1 PF18545.1 gi|289579739|ref|YP_003478205.1| - 2.6e-25 88.5 0.3 3.3e-25 88.2 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HalOD1 PF18545.1 gi|289579740|ref|YP_003478206.1| - 5.5e-19 68.2 1.4 2.8e-13 49.9 0.1 2.2 2 0 0 2 2 2 2 Halobacterial output domain 1 Phage_integrase PF00589.22 gi|289579741|ref|YP_003478207.1| - 9.3e-16 58.1 0.0 1.9e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family tRNA-synt_1g PF09334.11 gi|289579741|ref|YP_003478207.1| - 0.00064 18.6 0.0 0.0011 17.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (M) DZR PF12773.7 gi|289579741|ref|YP_003478207.1| - 0.0083 16.1 0.7 0.016 15.2 0.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon LINES_C PF14695.6 gi|289579742|ref|YP_003478208.1| - 0.021 14.2 1.0 0.033 13.6 1.0 1.3 1 0 0 1 1 1 0 Lines C-terminus DUF433 PF04255.14 gi|289579742|ref|YP_003478208.1| - 0.13 12.2 0.2 0.2 11.5 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF433) DUF236 PF03057.14 gi|289579743|ref|YP_003478209.1| - 0.11 12.5 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 DUF236 repeat DUF2254 PF10011.9 gi|289579745|ref|YP_003478211.1| - 6.3e-07 28.5 2.0 1.2e-06 27.6 2.0 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF2528 PF10800.8 gi|289579745|ref|YP_003478211.1| - 0.01 16.4 0.0 0.041 14.5 0.0 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2528) DUF11 PF01345.18 gi|289579746|ref|YP_003478212.1| - 0.0041 17.4 0.1 0.048 14.0 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|289579746|ref|YP_003478212.1| - 0.011 16.0 0.2 0.2 11.9 0.2 2.4 1 1 0 1 1 1 0 CARDB NPCBM_assoc PF10633.9 gi|289579746|ref|YP_003478212.1| - 0.15 12.4 0.1 1.4 9.2 0.0 2.1 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase HTH_29 PF13551.6 gi|289579747|ref|YP_003478213.1| - 0.0045 17.0 0.0 0.95 9.5 0.0 2.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_15 PF12324.8 gi|289579747|ref|YP_003478213.1| - 0.0086 16.0 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase HTH_23 PF13384.6 gi|289579747|ref|YP_003478213.1| - 0.044 13.6 0.0 10 6.1 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain DUF3606 PF12244.8 gi|289579747|ref|YP_003478213.1| - 0.068 13.1 0.4 0.57 10.2 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3606) MarR_2 PF12802.7 gi|289579747|ref|YP_003478213.1| - 0.095 12.6 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family Sdh5 PF03937.16 gi|289579747|ref|YP_003478213.1| - 0.16 11.9 0.0 24 5.0 0.0 2.6 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Macoilin PF09726.9 gi|289579748|ref|YP_003478214.1| - 0.0084 14.7 6.8 0.0097 14.5 6.8 1.1 1 0 0 1 1 1 1 Macoilin family SOG2 PF10428.9 gi|289579748|ref|YP_003478214.1| - 0.3 10.3 13.7 0.37 10.0 13.7 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein GREB1 PF15782.5 gi|289579748|ref|YP_003478214.1| - 0.62 7.1 11.4 0.76 6.8 11.4 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer MAJIN PF15077.6 gi|289579748|ref|YP_003478214.1| - 0.87 9.3 9.7 1.4 8.6 9.7 1.2 1 0 0 1 1 1 0 Membrane-anchored junction protein RR_TM4-6 PF06459.12 gi|289579748|ref|YP_003478214.1| - 1.7 8.4 11.3 2.8 7.7 11.3 1.4 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 UPF0492 PF15744.5 gi|289579748|ref|YP_003478214.1| - 2.4 7.3 18.8 4 6.6 18.8 1.2 1 0 0 1 1 1 0 Uncharacterized protein family UPF0492 DUF572 PF04502.13 gi|289579748|ref|YP_003478214.1| - 2.8 7.5 13.3 4.8 6.7 13.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF572) Apt1 PF10351.9 gi|289579748|ref|YP_003478214.1| - 3.6 6.3 10.2 5.3 5.8 10.2 1.4 1 0 0 1 1 1 0 Golgi-body localisation protein domain RAP1 PF07218.11 gi|289579748|ref|YP_003478214.1| - 5.1 5.3 11.1 6.7 4.9 11.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SPX PF03105.19 gi|289579748|ref|YP_003478214.1| - 5.8 6.7 18.4 9.1 6.1 18.4 1.4 1 0 0 1 1 1 0 SPX domain SAPS PF04499.15 gi|289579748|ref|YP_003478214.1| - 6.4 5.4 8.4 9.5 4.9 8.4 1.4 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF966 PF06136.13 gi|289579748|ref|YP_003478214.1| - 6.9 6.3 14.5 10 5.8 14.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF966) Dicty_REP PF05086.12 gi|289579748|ref|YP_003478214.1| - 8.6 4.2 9.1 11 3.8 9.1 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein DUF962 PF06127.11 gi|289579749|ref|YP_003478215.1| - 0.11 12.6 0.1 0.46 10.6 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF962) SNARE_assoc PF09335.11 gi|289579751|ref|YP_003478217.1| - 1.4e-11 44.9 4.6 1.4e-11 44.9 4.6 3.1 2 1 1 3 3 3 1 SNARE associated Golgi protein SMN PF06003.12 gi|289579752|ref|YP_003478218.1| - 0.031 13.5 0.3 0.036 13.3 0.3 1.0 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) Auto_anti-p27 PF06677.12 gi|289579752|ref|YP_003478218.1| - 0.15 12.3 4.4 0.33 11.1 4.4 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Formyl_trans_N PF00551.19 gi|289579753|ref|YP_003478219.1| - 1.4e-07 31.4 0.0 2.2e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase Ribonuc_red_lgC PF02867.15 gi|289579754|ref|YP_003478220.1| - 1.7e-149 498.7 0.0 2.1e-149 498.4 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain LAGLIDADG_3 PF14528.6 gi|289579754|ref|YP_003478220.1| - 8.2e-24 83.7 0.5 5.4e-23 81.1 0.0 2.7 3 0 0 3 3 3 1 LAGLIDADG-like domain Ribonuc_red_lgN PF00317.21 gi|289579754|ref|YP_003478220.1| - 2.8e-22 78.5 0.0 6.8e-22 77.3 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Intein_splicing PF14890.6 gi|289579754|ref|YP_003478220.1| - 6.1e-18 65.1 0.1 1.7e-17 63.6 0.1 1.8 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_WhiA PF14527.6 gi|289579754|ref|YP_003478220.1| - 0.14 12.2 0.0 0.63 10.1 0.0 2.1 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain zf-RING_7 PF02591.15 gi|289579754|ref|YP_003478220.1| - 0.64 10.2 2.2 7.3 6.9 0.0 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain TPPK_C PF12555.8 gi|289579755|ref|YP_003478221.1| - 4.2 7.5 19.0 0.81 9.8 10.5 2.1 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal Gram_pos_anchor PF00746.21 gi|289579755|ref|YP_003478221.1| - 8.1 6.5 10.1 0.4 10.7 1.5 2.1 2 0 0 2 2 2 0 LPXTG cell wall anchor motif GATase PF00117.28 gi|289579756|ref|YP_003478222.1| - 3e-43 147.8 0.1 1.1e-41 142.7 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289579756|ref|YP_003478222.1| - 0.0031 17.3 0.1 0.2 11.4 0.0 2.6 2 1 0 2 2 2 1 Peptidase C26 DUF5494 PF17598.2 gi|289579756|ref|YP_003478222.1| - 0.17 12.0 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5494) Chorismate_bind PF00425.18 gi|289579757|ref|YP_003478223.1| - 2.9e-87 292.5 0.0 5.5e-87 291.6 0.0 1.5 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|289579757|ref|YP_003478223.1| - 3.7e-15 56.4 0.1 1.3e-12 48.2 0.0 3.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|289579758|ref|YP_003478224.1| - 3.5e-39 134.6 0.1 4e-39 134.4 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.18 gi|289579758|ref|YP_003478224.1| - 0.0014 17.7 0.1 0.012 14.6 0.1 2.0 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|289579758|ref|YP_003478224.1| - 0.0052 16.1 2.4 0.0064 15.8 0.4 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase QRPTase_C PF01729.19 gi|289579758|ref|YP_003478224.1| - 0.012 15.4 0.4 0.039 13.7 0.1 2.0 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 gi|289579758|ref|YP_003478224.1| - 0.017 14.6 1.1 0.15 11.5 0.2 2.5 2 1 1 3 3 3 0 Histidine biosynthesis protein K_channel_TID PF07941.11 gi|289579758|ref|YP_003478224.1| - 0.36 11.3 0.2 0.36 11.3 0.2 2.1 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain OKR_DC_1_N PF03709.15 gi|289579758|ref|YP_003478224.1| - 2 8.7 6.3 0.75 10.1 0.1 2.6 2 1 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Glycos_transf_3 PF00591.21 gi|289579759|ref|YP_003478225.1| - 6.2e-98 327.4 4.2 8.5e-98 327.0 4.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|289579759|ref|YP_003478225.1| - 1.4e-15 56.9 6.3 1.6e-15 56.7 4.7 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|289579759|ref|YP_003478225.1| - 0.0087 15.7 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) BCCT PF02028.17 gi|289579761|ref|YP_003478227.1| - 4.9e-183 609.0 40.1 5.6e-183 608.8 40.1 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Usp PF00582.26 gi|289579762|ref|YP_003478228.1| - 1.4e-18 67.8 0.2 1.6e-18 67.5 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Ppx-GppA PF02541.16 gi|289579762|ref|YP_003478228.1| - 0.04 13.4 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 Ppx/GppA phosphatase family Mem_trans PF03547.18 gi|289579763|ref|YP_003478229.1| - 3.4e-23 81.7 18.3 8.3e-13 47.5 9.8 2.0 1 1 1 2 2 2 2 Membrane transport protein CARMIL_C PF16000.5 gi|289579764|ref|YP_003478230.1| - 0.63 9.6 10.3 1.1 8.9 10.3 1.3 1 0 0 1 1 1 0 CARMIL C-terminus CAP PF00188.26 gi|289579765|ref|YP_003478231.1| - 8.6e-12 46.0 0.1 1.7e-11 45.0 0.1 1.5 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CBS PF00571.28 gi|289579767|ref|YP_003478233.1| - 4.7e-36 123.0 12.1 5.8e-13 49.1 0.2 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|289579767|ref|YP_003478233.1| - 0.00091 20.0 0.3 0.0027 18.5 0.3 1.9 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein POTRA PF07244.15 gi|289579767|ref|YP_003478233.1| - 0.011 16.3 0.0 0.26 11.9 0.0 3.1 2 1 1 3 3 3 0 Surface antigen variable number repeat GAF PF01590.26 gi|289579767|ref|YP_003478233.1| - 0.099 13.3 0.4 26 5.5 0.0 3.0 2 1 1 3 3 3 0 GAF domain DUF3010 PF11215.8 gi|289579767|ref|YP_003478233.1| - 0.25 11.6 0.7 7 7.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3010) Peptidase_S8 PF00082.22 gi|289579768|ref|YP_003478234.1| - 1.5e-44 152.4 4.1 2.2e-44 151.9 4.1 1.2 1 0 0 1 1 1 1 Subtilase family ABC_tran PF00005.27 gi|289579769|ref|YP_003478235.1| - 6.5e-26 91.5 0.0 9.8e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289579769|ref|YP_003478235.1| - 2.1e-11 44.2 0.0 2.8e-06 27.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289579769|ref|YP_003478235.1| - 2.3e-06 28.2 0.0 1.3e-05 25.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|289579769|ref|YP_003478235.1| - 0.0018 18.0 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289579769|ref|YP_003478235.1| - 0.0032 18.0 0.0 0.0042 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|289579769|ref|YP_003478235.1| - 0.0037 17.0 0.0 0.012 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289579769|ref|YP_003478235.1| - 0.03 13.7 0.0 4.8 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|289579769|ref|YP_003478235.1| - 0.17 11.1 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC2_membrane_2 PF12679.7 gi|289579770|ref|YP_003478236.1| - 7.2e-31 107.5 20.7 2e-30 106.1 20.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289579770|ref|YP_003478236.1| - 1.6e-07 30.8 23.8 1.6e-07 30.8 23.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|289579770|ref|YP_003478236.1| - 1.8e-05 24.2 21.4 0.0002 20.9 21.5 2.0 1 1 0 1 1 1 1 ABC-2 type transporter DUF2070 PF09843.9 gi|289579770|ref|YP_003478236.1| - 0.19 10.0 15.2 0.24 9.7 15.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane_5 PF13346.6 gi|289579770|ref|YP_003478236.1| - 0.9 9.1 15.2 0.19 11.2 11.9 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289579770|ref|YP_003478236.1| - 2.2 8.2 15.6 0.41 10.6 12.1 1.5 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF418 PF04235.12 gi|289579771|ref|YP_003478237.1| - 3.8e-47 160.2 17.6 3.8e-47 160.2 17.6 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF418) Rad51 PF08423.11 gi|289579772|ref|YP_003478238.1| - 8e-23 81.0 0.0 1.4e-12 47.4 0.0 2.0 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.6 gi|289579772|ref|YP_003478238.1| - 2.2e-13 50.3 0.1 5.9e-13 48.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|289579772|ref|YP_003478238.1| - 1.6e-10 40.7 0.2 1e-06 28.3 0.3 2.2 2 0 0 2 2 2 2 KaiC RecA PF00154.21 gi|289579772|ref|YP_003478238.1| - 2.3e-10 40.4 0.1 1e-08 35.0 0.1 2.1 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|289579772|ref|YP_003478238.1| - 2.2e-06 27.6 0.3 7.6e-05 22.5 0.3 2.8 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|289579772|ref|YP_003478238.1| - 7e-06 25.8 0.0 0.017 14.8 0.0 2.1 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|289579772|ref|YP_003478238.1| - 0.00033 20.1 0.0 0.0013 18.2 0.0 1.9 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|289579772|ref|YP_003478238.1| - 0.022 14.5 0.1 0.059 13.1 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|289579772|ref|YP_003478238.1| - 0.11 11.7 0.1 0.22 10.8 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin DUF460 PF04312.13 gi|289579773|ref|YP_003478239.1| - 0.00084 19.1 0.2 0.0017 18.1 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Big_3_3 PF13750.6 gi|289579773|ref|YP_003478239.1| - 0.0042 16.7 0.1 0.0076 15.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) HTH_35 PF13693.6 gi|289579773|ref|YP_003478239.1| - 0.061 13.4 0.0 0.77 9.8 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PAP2 PF01569.21 gi|289579774|ref|YP_003478240.1| - 4.5e-20 71.8 3.0 9.9e-20 70.7 3.0 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 gi|289579774|ref|YP_003478240.1| - 2.7e-08 33.7 4.9 5.3e-08 32.8 5.0 1.5 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|289579774|ref|YP_003478240.1| - 0.0047 17.4 0.4 0.0097 16.4 0.4 1.5 1 0 0 1 1 1 1 PAP2 superfamily C-terminal DUF3341 PF11821.8 gi|289579774|ref|YP_003478240.1| - 3.5 7.2 5.6 0.43 10.2 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3341) Peptidase_M20 PF01546.28 gi|289579775|ref|YP_003478241.1| - 8.8e-30 103.9 0.5 1.3e-29 103.4 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289579775|ref|YP_003478241.1| - 2e-10 40.5 0.0 3.8e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain SBP_bac_8 PF13416.6 gi|289579776|ref|YP_003478242.1| - 1e-25 91.2 0.2 1.4e-25 90.7 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289579776|ref|YP_003478242.1| - 1.7e-11 44.0 0.4 2.4e-11 43.5 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289579776|ref|YP_003478242.1| - 0.00015 21.9 2.6 0.00049 20.1 1.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289579776|ref|YP_003478242.1| - 0.31 11.0 7.5 0.48 10.3 7.5 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|289579777|ref|YP_003478243.1| - 1.2e-35 123.0 0.0 2.1e-35 122.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|289579777|ref|YP_003478243.1| - 1.3e-12 47.7 0.2 6.9e-12 45.4 0.0 2.3 2 1 1 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|289579777|ref|YP_003478243.1| - 1.4e-06 28.4 0.8 0.00048 20.0 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289579777|ref|YP_003478243.1| - 1.4e-05 24.6 0.2 0.024 14.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289579777|ref|YP_003478243.1| - 0.0015 18.2 0.0 0.0037 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289579777|ref|YP_003478243.1| - 0.0035 17.7 0.1 0.0073 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|289579777|ref|YP_003478243.1| - 0.0067 16.9 0.1 0.2 12.0 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289579777|ref|YP_003478243.1| - 0.032 14.5 0.1 0.074 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289579777|ref|YP_003478243.1| - 0.04 13.8 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase OB_MalK PF17912.1 gi|289579777|ref|YP_003478243.1| - 0.058 14.2 0.0 0.44 11.4 0.0 2.5 2 0 0 2 2 2 0 MalK OB fold domain SbcCD_C PF13558.6 gi|289579777|ref|YP_003478243.1| - 0.062 13.5 0.1 1.1 9.5 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|289579777|ref|YP_003478243.1| - 0.13 11.5 0.1 0.26 10.4 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|289579778|ref|YP_003478244.1| - 1.7e-16 60.5 18.2 1.7e-16 60.5 18.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MRAP PF15183.6 gi|289579778|ref|YP_003478244.1| - 0.58 10.1 6.4 3 7.9 1.9 2.7 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family BPD_transp_1 PF00528.22 gi|289579779|ref|YP_003478245.1| - 1.2e-18 67.5 16.0 1.2e-18 67.5 16.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Hist_deacetyl PF00850.19 gi|289579780|ref|YP_003478246.1| - 3.9e-71 240.1 0.0 5.3e-71 239.6 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain DUF389 PF04087.14 gi|289579782|ref|YP_003478248.1| - 2.9e-32 111.6 18.0 2.9e-32 111.6 18.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF389) MarR_2 PF12802.7 gi|289579783|ref|YP_003478249.1| - 4.4e-07 29.7 0.7 1.5e-06 28.0 0.5 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|289579783|ref|YP_003478249.1| - 8.9e-06 25.2 0.2 9e-05 22.0 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|289579783|ref|YP_003478249.1| - 0.00027 20.8 0.6 0.0058 16.6 0.1 2.8 3 0 0 3 3 3 1 HTH domain Sigma70_r4 PF04545.16 gi|289579783|ref|YP_003478249.1| - 0.0003 20.3 0.0 0.00092 18.7 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.22 gi|289579783|ref|YP_003478249.1| - 0.0019 18.1 0.1 0.0069 16.3 0.1 2.0 1 0 0 1 1 1 1 MarR family YdaS_antitoxin PF15943.5 gi|289579783|ref|YP_003478249.1| - 0.0077 16.1 0.1 0.13 12.1 0.0 2.3 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 gi|289579783|ref|YP_003478249.1| - 0.055 13.3 0.5 0.055 13.3 0.5 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HRDC PF00570.23 gi|289579783|ref|YP_003478249.1| - 0.066 13.2 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 HRDC domain HTH_38 PF13936.6 gi|289579783|ref|YP_003478249.1| - 0.14 12.0 0.1 0.31 10.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Syntaxin-6_N PF09177.11 gi|289579783|ref|YP_003478249.1| - 0.24 12.0 2.5 4 8.1 0.1 3.0 3 0 0 3 3 3 0 Syntaxin 6, N-terminal HTH_10 PF04967.12 gi|289579783|ref|YP_003478249.1| - 0.28 11.0 2.6 1.8 8.5 0.8 2.9 2 1 0 2 2 2 0 HTH DNA binding domain NTP_transferase PF00483.23 gi|289579784|ref|YP_003478250.1| - 2.2e-41 142.1 0.0 2.5e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289579784|ref|YP_003478250.1| - 2.7e-13 50.6 0.0 3.3e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|289579784|ref|YP_003478250.1| - 1.5e-06 28.1 0.0 1.2e-05 25.2 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3652 PF12372.8 gi|289579784|ref|YP_003478250.1| - 0.035 14.0 0.1 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 Huntingtin protein region AglB_L1 PF18079.1 gi|289579785|ref|YP_003478251.1| - 2.1e-12 47.1 0.5 5.2e-12 45.9 0.2 1.8 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain Big_6 PF17936.1 gi|289579785|ref|YP_003478251.1| - 0.00091 19.4 3.1 0.0025 18.0 0.4 2.7 3 0 0 3 3 3 1 Bacterial Ig domain Mannosyl_trans4 PF15971.5 gi|289579785|ref|YP_003478251.1| - 0.0069 16.3 5.8 0.0069 16.3 5.8 3.5 2 1 1 3 3 3 1 DolP-mannose mannosyltransferase CarboxypepD_reg PF13620.6 gi|289579785|ref|YP_003478251.1| - 0.12 12.7 0.3 0.67 10.3 0.1 2.3 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain TPP_enzyme_N PF02776.18 gi|289579787|ref|YP_003478253.1| - 2.5e-50 170.5 0.2 5e-48 162.9 0.0 3.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289579787|ref|YP_003478253.1| - 2.1e-26 92.6 0.0 1.1e-25 90.2 0.0 2.2 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|289579787|ref|YP_003478253.1| - 1.3e-21 76.8 0.0 2.4e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain NTP_transf_3 PF12804.7 gi|289579787|ref|YP_003478253.1| - 0.14 12.5 1.5 0.63 10.4 0.7 2.5 2 1 0 2 2 2 0 MobA-like NTP transferase domain Aminotran_1_2 PF00155.21 gi|289579788|ref|YP_003478254.1| - 1.6e-34 119.7 0.0 1.9e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|289579788|ref|YP_003478254.1| - 1.5e-12 47.1 0.0 7.6e-12 44.7 0.0 1.8 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|289579788|ref|YP_003478254.1| - 0.0014 17.9 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|289579788|ref|YP_003478254.1| - 0.014 14.7 0.0 0.036 13.4 0.0 1.7 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|289579788|ref|YP_003478254.1| - 0.057 12.4 0.0 0.089 11.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Peptidase_Mx1 PF15890.5 gi|289579788|ref|YP_003478254.1| - 0.091 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative zinc-binding metallo-peptidase Peptidase_M20 PF01546.28 gi|289579789|ref|YP_003478255.1| - 8.4e-36 123.6 1.5 9.3e-36 123.5 0.4 1.6 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289579789|ref|YP_003478255.1| - 8.9e-17 61.0 0.0 2.1e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|289579790|ref|YP_003478256.1| - 6.9e-34 117.4 1.9 9.2e-34 117.0 1.9 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289579790|ref|YP_003478256.1| - 6.7e-13 48.5 0.0 1.7e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|289579790|ref|YP_003478256.1| - 0.051 12.6 0.1 3.7 6.5 0.0 2.9 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase SBP_bac_8 PF13416.6 gi|289579791|ref|YP_003478257.1| - 2.9e-18 66.7 0.4 4.1e-18 66.2 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289579791|ref|YP_003478257.1| - 1e-17 64.4 0.0 2e-17 63.4 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289579791|ref|YP_003478257.1| - 0.00075 19.2 0.7 0.0013 18.5 0.7 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Elf4 PF07011.11 gi|289579791|ref|YP_003478257.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Early Flowering 4 domain Peptidase_M20 PF01546.28 gi|289579792|ref|YP_003478258.1| - 9.6e-34 116.9 0.7 1.4e-33 116.3 0.7 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289579792|ref|YP_003478258.1| - 4.6e-12 45.8 0.1 1.4e-11 44.3 0.0 1.9 3 0 0 3 3 3 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|289579792|ref|YP_003478258.1| - 0.033 13.2 0.0 0.31 10.0 0.0 2.4 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase Amidohydro_3 PF07969.11 gi|289579793|ref|YP_003478259.1| - 1.2e-24 87.7 4.9 4.2e-17 62.8 3.4 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|289579793|ref|YP_003478259.1| - 5.5e-19 68.7 0.0 6.9e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family IclR PF01614.18 gi|289579794|ref|YP_003478260.1| - 6.4e-31 106.9 0.0 1e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289579794|ref|YP_003478260.1| - 1.3e-16 60.1 0.6 3.1e-16 58.9 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289579794|ref|YP_003478260.1| - 4.2e-08 32.6 0.0 8.2e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289579794|ref|YP_003478260.1| - 3.6e-06 26.8 0.0 7.5e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|289579794|ref|YP_003478260.1| - 5.2e-05 23.1 0.0 0.0002 21.3 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|289579794|ref|YP_003478260.1| - 7.3e-05 22.6 0.0 0.00017 21.4 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|289579794|ref|YP_003478260.1| - 0.0076 16.1 0.1 0.021 14.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|289579794|ref|YP_003478260.1| - 0.02 14.7 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|289579794|ref|YP_003478260.1| - 0.022 14.7 0.0 0.071 13.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|289579794|ref|YP_003478260.1| - 0.053 14.0 0.1 0.18 12.3 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|289579794|ref|YP_003478260.1| - 0.074 13.0 0.2 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_8 PF13416.6 gi|289579795|ref|YP_003478261.1| - 5e-20 72.5 2.3 6.9e-20 72.0 2.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289579795|ref|YP_003478261.1| - 7.6e-16 58.3 0.0 1.2e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289579795|ref|YP_003478261.1| - 2.9e-05 24.2 0.1 0.00018 21.6 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289579795|ref|YP_003478261.1| - 0.0069 16.2 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Elf4 PF07011.11 gi|289579795|ref|YP_003478261.1| - 0.2 11.6 0.0 0.36 10.8 0.0 1.3 1 0 0 1 1 1 0 Early Flowering 4 domain ABC_tran PF00005.27 gi|289579796|ref|YP_003478262.1| - 2.2e-36 125.4 0.0 1.5e-35 122.7 0.0 2.0 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|289579796|ref|YP_003478262.1| - 1e-14 54.4 0.0 2.7e-14 53.1 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|289579796|ref|YP_003478262.1| - 2.3e-07 30.9 0.4 0.0019 18.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289579796|ref|YP_003478262.1| - 2.3e-06 27.2 1.2 0.0027 17.2 0.1 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289579796|ref|YP_003478262.1| - 0.0011 18.6 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289579796|ref|YP_003478262.1| - 0.0044 17.4 0.3 0.01 16.2 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|289579796|ref|YP_003478262.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|289579796|ref|YP_003478262.1| - 0.03 14.8 0.1 0.29 11.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|289579796|ref|YP_003478262.1| - 0.033 14.3 0.4 0.48 10.5 0.4 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|289579796|ref|YP_003478262.1| - 0.041 14.1 0.2 0.12 12.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|289579796|ref|YP_003478262.1| - 0.049 13.8 0.1 0.21 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289579796|ref|YP_003478262.1| - 0.068 13.7 0.5 0.14 12.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|289579796|ref|YP_003478262.1| - 0.076 12.6 0.0 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289579796|ref|YP_003478262.1| - 0.081 12.8 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|289579796|ref|YP_003478262.1| - 0.12 12.6 0.1 1.3 9.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CRR7 PF12095.8 gi|289579796|ref|YP_003478262.1| - 0.15 12.5 0.5 4.9 7.7 0.0 2.8 2 1 0 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 NB-ARC PF00931.22 gi|289579796|ref|YP_003478262.1| - 0.17 11.0 0.7 0.55 9.4 0.7 1.8 1 1 0 1 1 1 0 NB-ARC domain Dynamin_N PF00350.23 gi|289579796|ref|YP_003478262.1| - 0.3 11.1 2.1 2.2 8.3 0.5 2.4 2 1 0 2 2 2 0 Dynamin family BPD_transp_1 PF00528.22 gi|289579797|ref|YP_003478263.1| - 1.5e-15 57.4 20.5 1.5e-15 57.4 20.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289579798|ref|YP_003478264.1| - 6.1e-18 65.2 19.0 6.1e-18 65.2 19.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component p53-inducible11 PF14936.6 gi|289579798|ref|YP_003478264.1| - 7.1 6.6 9.0 0.96 9.5 4.1 2.1 2 1 0 2 2 2 0 Tumour protein p53-inducible protein 11 SBP_bac_8 PF13416.6 gi|289579799|ref|YP_003478265.1| - 3.7e-20 72.9 0.0 5.3e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289579799|ref|YP_003478265.1| - 1.9e-17 63.5 0.0 3e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3085 PF11284.8 gi|289579799|ref|YP_003478265.1| - 0.08 13.3 0.1 0.78 10.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3085) SBP_bac_8 PF13416.6 gi|289579800|ref|YP_003478266.1| - 2.3e-21 76.8 0.0 3.4e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289579800|ref|YP_003478266.1| - 1.3e-13 51.0 0.0 2.1e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289579800|ref|YP_003478266.1| - 0.00019 21.1 1.0 0.00032 20.4 1.0 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MFS_1 PF07690.16 gi|289579801|ref|YP_003478267.1| - 2.1e-56 191.4 69.3 1.6e-46 158.8 40.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|289579801|ref|YP_003478267.1| - 1.5e-06 27.4 28.8 0.00021 20.3 3.4 3.8 1 1 2 3 3 3 3 Sugar (and other) transporter MFS_4 PF06779.14 gi|289579801|ref|YP_003478267.1| - 0.00018 20.9 26.3 0.00025 20.5 26.3 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|289579801|ref|YP_003478267.1| - 0.0034 16.3 18.2 0.39 9.5 10.3 2.2 1 1 1 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|289579801|ref|YP_003478267.1| - 0.0057 15.0 3.7 0.0057 15.0 3.7 3.1 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family Bac_transf PF02397.16 gi|289579805|ref|YP_003478271.1| - 1.4e-57 194.3 0.0 3.1e-57 193.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|289579805|ref|YP_003478271.1| - 4.2e-14 52.8 0.0 8.1e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1970) DUF3995 PF13160.6 gi|289579805|ref|YP_003478271.1| - 2.5 8.5 10.8 3.1 8.2 4.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3995) YdjM PF04307.14 gi|289579806|ref|YP_003478272.1| - 6.1e-10 38.7 9.7 1e-09 38.0 9.7 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3307 PF11750.8 gi|289579806|ref|YP_003478272.1| - 0.061 13.4 1.6 5.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) PIN PF01850.21 gi|289579809|ref|YP_003478275.1| - 7.9e-05 23.2 0.1 9.9e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|289579810|ref|YP_003478276.1| - 0.00018 21.3 0.9 0.00018 21.3 0.9 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Herpes_IE68 PF02479.16 gi|289579810|ref|YP_003478276.1| - 0.04 13.5 0.2 0.78 9.3 0.1 1.9 1 1 1 2 2 2 0 Herpesvirus immediate early protein OEP PF02321.18 gi|289579810|ref|YP_003478276.1| - 0.21 11.4 5.0 0.26 11.1 5.0 1.0 1 0 0 1 1 1 0 Outer membrane efflux protein SWIM PF04434.17 gi|289579812|ref|YP_003478278.1| - 2.9e-06 26.8 0.6 6.1e-06 25.8 0.6 1.6 1 0 0 1 1 1 1 SWIM zinc finger TPR_14 PF13428.6 gi|289579812|ref|YP_003478278.1| - 3.4e-06 27.4 3.2 0.0093 16.7 0.2 4.4 2 0 0 2 2 2 2 Tetratricopeptide repeat Vps39_1 PF10366.9 gi|289579812|ref|YP_003478278.1| - 0.051 13.9 0.3 1.1 9.6 0.0 3.1 3 0 0 3 3 3 0 Vacuolar sorting protein 39 domain 1 TPR_19 PF14559.6 gi|289579812|ref|YP_003478278.1| - 0.2 12.2 2.3 0.63 10.6 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|289579812|ref|YP_003478278.1| - 0.99 9.6 5.9 1.1 9.5 0.7 3.9 2 2 1 3 3 3 0 Tetratricopeptide repeat VAPB_antitox PF02697.14 gi|289579813|ref|YP_003478279.1| - 2.1e-14 54.0 1.1 2.9e-14 53.6 1.1 1.4 1 1 0 1 1 1 1 Putative antitoxin NitrOD5 PF11537.8 gi|289579813|ref|YP_003478279.1| - 0.11 12.7 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 MarR_2 PF12802.7 gi|289579814|ref|YP_003478280.1| - 1.3e-09 37.8 0.0 1.9e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|289579814|ref|YP_003478280.1| - 5.3e-05 23.2 0.0 7.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289579814|ref|YP_003478280.1| - 5.6e-05 23.0 0.0 8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|289579814|ref|YP_003478280.1| - 0.00013 21.7 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289579814|ref|YP_003478280.1| - 0.00025 20.9 0.0 0.00034 20.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|289579814|ref|YP_003478280.1| - 0.00029 21.0 0.0 0.00071 19.7 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|289579814|ref|YP_003478280.1| - 0.00032 21.0 0.0 0.00046 20.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|289579814|ref|YP_003478280.1| - 0.00082 19.2 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289579814|ref|YP_003478280.1| - 0.0011 18.8 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|289579814|ref|YP_003478280.1| - 0.0033 17.1 0.0 0.0039 16.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|289579814|ref|YP_003478280.1| - 0.0038 16.7 0.0 0.0057 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|289579814|ref|YP_003478280.1| - 0.082 12.8 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.21 gi|289579814|ref|YP_003478280.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|289579814|ref|YP_003478280.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|289579815|ref|YP_003478281.1| - 2.4e-05 24.0 0.0 4.3e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|289579815|ref|YP_003478281.1| - 0.00015 21.6 0.0 0.0003 20.6 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|289579815|ref|YP_003478281.1| - 0.0017 18.8 0.0 0.0029 18.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.16 gi|289579815|ref|YP_003478281.1| - 0.0027 17.7 0.1 0.73 9.9 0.0 2.4 2 1 0 2 2 2 1 HemN C-terminal domain Rrf2 PF02082.20 gi|289579815|ref|YP_003478281.1| - 0.0032 17.8 0.0 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.9 gi|289579815|ref|YP_003478281.1| - 0.005 16.9 0.0 0.0062 16.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.14 gi|289579815|ref|YP_003478281.1| - 0.0053 16.7 0.0 0.0095 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|289579815|ref|YP_003478281.1| - 0.0056 17.0 0.0 0.0092 16.3 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.7 gi|289579815|ref|YP_003478281.1| - 0.0063 16.4 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|289579815|ref|YP_003478281.1| - 0.008 15.9 0.0 0.0095 15.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|289579815|ref|YP_003478281.1| - 0.01 16.0 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|289579815|ref|YP_003478281.1| - 0.012 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|289579815|ref|YP_003478281.1| - 0.044 13.6 0.0 0.074 12.9 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.22 gi|289579815|ref|YP_003478281.1| - 0.047 13.6 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|289579815|ref|YP_003478281.1| - 0.047 13.7 0.1 0.075 13.0 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TSNR_N PF04705.12 gi|289579815|ref|YP_003478281.1| - 0.078 13.1 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus PemK_toxin PF02452.17 gi|289579816|ref|YP_003478282.1| - 0.00014 22.3 0.0 0.00015 22.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system CysG_dimeriser PF10414.9 gi|289579817|ref|YP_003478283.1| - 0.071 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region TrmB PF01978.19 gi|289579818|ref|YP_003478284.1| - 0.0033 17.3 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|289579818|ref|YP_003478284.1| - 0.07 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289579818|ref|YP_003478284.1| - 0.19 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RHH_1 PF01402.21 gi|289579819|ref|YP_003478285.1| - 1.6e-09 37.3 6.1 7.6e-09 35.2 1.4 2.1 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|289579819|ref|YP_003478285.1| - 0.016 15.3 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF86 PF01934.17 gi|289579821|ref|YP_003478287.1| - 5e-24 84.4 0.5 6.2e-24 84.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 SMK-1 PF04802.15 gi|289579821|ref|YP_003478287.1| - 0.0085 15.9 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Component of IIS longevity pathway SMK-1 DUF4145 PF13643.6 gi|289579821|ref|YP_003478287.1| - 0.015 15.4 0.2 0.039 14.1 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) HEPN_RiboL-PSP PF18735.1 gi|289579821|ref|YP_003478287.1| - 0.032 14.1 0.0 0.038 13.9 0.0 1.2 1 1 0 1 1 1 0 RiboL-PSP-HEPN Polbeta PF18765.1 gi|289579822|ref|YP_003478288.1| - 6.5e-12 45.4 0.0 8.4e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|289579822|ref|YP_003478288.1| - 6.6e-08 32.7 0.0 9.9e-08 32.2 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|289579822|ref|YP_003478288.1| - 0.054 13.1 0.1 0.054 13.1 0.1 2.1 2 1 0 3 3 3 0 RNA repair pathway DNA polymerase beta family RHH_1 PF01402.21 gi|289579823|ref|YP_003478289.1| - 0.00032 20.5 2.7 0.027 14.4 0.2 2.1 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|289579823|ref|YP_003478289.1| - 0.015 15.4 0.0 0.028 14.5 0.0 1.4 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Glyco_transf_4 PF13439.6 gi|289579825|ref|YP_003478291.1| - 4.9e-29 101.5 0.2 7.5e-29 100.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|289579825|ref|YP_003478291.1| - 8.1e-25 87.3 0.0 1.3e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289579825|ref|YP_003478291.1| - 3.8e-24 85.6 0.0 1.9e-23 83.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289579825|ref|YP_003478291.1| - 2.2e-22 80.2 0.6 5.1e-22 79.0 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|289579825|ref|YP_003478291.1| - 5.5e-07 29.7 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|289579825|ref|YP_003478291.1| - 0.0029 18.0 0.0 0.0064 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_N PF04413.16 gi|289579825|ref|YP_003478291.1| - 0.0054 16.4 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_transf_5 PF08323.11 gi|289579825|ref|YP_003478291.1| - 0.021 14.5 0.5 0.21 11.3 0.5 2.2 1 1 1 2 2 2 0 Starch synthase catalytic domain AAA_33 PF13671.6 gi|289579826|ref|YP_003478292.1| - 8.8e-41 139.4 0.0 1.3e-40 138.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|289579826|ref|YP_003478292.1| - 2.4e-08 33.9 0.3 0.0045 16.7 0.1 2.6 3 0 0 3 3 3 2 Thymidylate kinase AAA_17 PF13207.6 gi|289579826|ref|YP_003478292.1| - 2.4e-07 31.2 0.6 0.0026 18.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|289579826|ref|YP_003478292.1| - 3.5e-07 30.8 0.1 1.6e-06 28.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|289579826|ref|YP_003478292.1| - 2.5e-05 24.2 0.0 0.00051 19.9 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA PF00004.29 gi|289579826|ref|YP_003478292.1| - 0.00015 22.2 0.1 0.00084 19.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|289579826|ref|YP_003478292.1| - 0.00016 21.7 0.3 0.00025 21.0 0.3 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|289579826|ref|YP_003478292.1| - 0.00039 20.8 0.7 0.00097 19.6 0.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|289579826|ref|YP_003478292.1| - 0.0063 16.4 0.6 0.025 14.5 0.3 2.0 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|289579826|ref|YP_003478292.1| - 0.0078 16.5 2.3 0.12 12.6 2.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289579826|ref|YP_003478292.1| - 0.0085 16.4 3.3 0.074 13.3 0.8 2.5 1 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|289579826|ref|YP_003478292.1| - 0.011 15.5 0.2 0.011 15.5 0.2 1.8 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|289579826|ref|YP_003478292.1| - 0.014 15.3 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase SKI PF01202.22 gi|289579826|ref|YP_003478292.1| - 0.015 15.5 0.1 3.3 7.8 0.0 2.4 2 1 0 2 2 2 0 Shikimate kinase AAA_19 PF13245.6 gi|289579826|ref|YP_003478292.1| - 0.017 15.5 0.4 0.098 13.0 0.4 2.0 1 1 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.20 gi|289579826|ref|YP_003478292.1| - 0.019 13.7 0.1 0.03 13.0 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_5 PF07728.14 gi|289579826|ref|YP_003478292.1| - 0.024 14.7 0.1 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|289579826|ref|YP_003478292.1| - 0.032 14.1 0.2 0.075 12.9 0.2 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ADK PF00406.22 gi|289579826|ref|YP_003478292.1| - 0.033 14.3 0.2 3.4 7.8 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase 6PF2K PF01591.18 gi|289579826|ref|YP_003478292.1| - 0.043 13.1 0.1 0.063 12.6 0.1 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase NB-ARC PF00931.22 gi|289579826|ref|YP_003478292.1| - 0.052 12.7 0.2 0.099 11.8 0.2 1.5 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|289579826|ref|YP_003478292.1| - 0.095 11.7 1.3 0.18 10.7 0.9 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RuvB_N PF05496.12 gi|289579826|ref|YP_003478292.1| - 0.1 12.3 0.1 0.36 10.5 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain SRP54 PF00448.22 gi|289579826|ref|YP_003478292.1| - 0.19 11.3 0.4 0.31 10.6 0.4 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Methyltransf_25 PF13649.6 gi|289579827|ref|YP_003478293.1| - 6.9e-16 58.7 0.0 1.4e-15 57.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289579827|ref|YP_003478293.1| - 3e-13 50.2 0.0 5.8e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289579827|ref|YP_003478293.1| - 5.8e-12 45.6 0.0 8.4e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289579827|ref|YP_003478293.1| - 3.8e-09 36.6 0.0 4.6e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289579827|ref|YP_003478293.1| - 8.5e-09 35.1 0.0 2.4e-08 33.6 0.0 1.6 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|289579827|ref|YP_003478293.1| - 1.3e-08 35.4 0.0 3.5e-08 34.1 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|289579827|ref|YP_003478293.1| - 0.00023 20.8 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|289579827|ref|YP_003478293.1| - 0.0003 20.3 0.0 0.00042 19.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DUF938 PF06080.12 gi|289579827|ref|YP_003478293.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_18 PF12847.7 gi|289579827|ref|YP_003478293.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|289579827|ref|YP_003478293.1| - 0.021 13.9 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase TehB PF03848.14 gi|289579827|ref|YP_003478293.1| - 0.036 13.5 0.3 0.22 10.9 0.0 2.0 1 1 1 2 2 2 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|289579827|ref|YP_003478293.1| - 0.044 13.8 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|289579827|ref|YP_003478293.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase 3HCDH_N PF02737.18 gi|289579827|ref|YP_003478293.1| - 0.16 11.9 0.1 0.43 10.4 0.1 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trigger_C PF05698.14 gi|289579827|ref|YP_003478293.1| - 0.16 12.0 0.2 0.72 9.9 0.0 2.2 3 1 1 4 4 3 0 Bacterial trigger factor protein (TF) C-terminus UPF0020 PF01170.18 gi|289579827|ref|YP_003478293.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Glycos_transf_1 PF00534.20 gi|289579828|ref|YP_003478294.1| - 9.2e-23 80.6 0.0 1.4e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289579828|ref|YP_003478294.1| - 1.3e-21 77.4 0.0 4.9e-21 75.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|289579828|ref|YP_003478294.1| - 1.7e-10 41.2 0.0 3.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|289579828|ref|YP_003478294.1| - 5.4e-10 39.5 0.0 2.2e-09 37.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289579828|ref|YP_003478294.1| - 3.2e-06 27.7 0.0 5.2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain A-2_8-polyST PF07388.11 gi|289579829|ref|YP_003478295.1| - 0.057 12.0 0.7 0.072 11.7 0.7 1.1 1 0 0 1 1 1 0 Alpha-2,8-polysialyltransferase (POLYST) Asn_synthase PF00733.21 gi|289579830|ref|YP_003478296.1| - 7.2e-10 39.1 0.0 6.4e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|289579830|ref|YP_003478296.1| - 0.0074 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|289579830|ref|YP_003478296.1| - 0.021 14.3 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|289579830|ref|YP_003478296.1| - 0.026 14.4 0.2 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 Glutamine amidotransferase domain DUF4298 PF14131.6 gi|289579830|ref|YP_003478296.1| - 0.085 12.8 0.0 1.2 9.1 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4298) Zn_Tnp_IS1595 PF12760.7 gi|289579831|ref|YP_003478297.1| - 4e-10 39.5 0.4 6.9e-10 38.8 0.4 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DDE_Tnp_IS1595 PF12762.7 gi|289579831|ref|YP_003478297.1| - 5.3e-09 36.3 0.0 5e-05 23.4 0.1 2.4 1 1 1 2 2 2 2 ISXO2-like transposase domain zf-C4_Topoisom PF01396.19 gi|289579831|ref|YP_003478297.1| - 0.00039 20.2 2.0 0.00079 19.2 2.0 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.13 gi|289579831|ref|YP_003478297.1| - 0.0012 18.5 2.9 0.0028 17.3 2.9 1.6 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|289579831|ref|YP_003478297.1| - 0.0068 16.1 0.2 0.02 14.6 0.4 1.6 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 CoiA PF06054.11 gi|289579831|ref|YP_003478297.1| - 0.0092 15.2 0.3 0.013 14.7 0.3 1.3 1 0 0 1 1 1 1 Competence protein CoiA-like family zinc-ribbons_6 PF07191.12 gi|289579831|ref|YP_003478297.1| - 0.019 15.0 0.5 0.039 13.9 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.7 gi|289579831|ref|YP_003478297.1| - 0.06 13.4 0.3 0.11 12.5 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289579831|ref|YP_003478297.1| - 0.069 13.3 0.5 15 5.8 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|289579831|ref|YP_003478297.1| - 0.2 12.2 2.0 0.65 10.6 2.0 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain AAA_18 PF13238.6 gi|289579832|ref|YP_003478298.1| - 1.2e-06 29.1 0.0 4.4e-05 24.0 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|289579832|ref|YP_003478298.1| - 1.7e-05 25.0 0.0 0.00027 21.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|289579832|ref|YP_003478298.1| - 0.0029 18.0 0.0 2.9 8.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain dNK PF01712.19 gi|289579832|ref|YP_003478298.1| - 0.02 14.8 0.3 2.6 7.8 0.0 3.0 2 1 0 3 3 3 0 Deoxynucleoside kinase Thymidylate_kin PF02223.17 gi|289579832|ref|YP_003478298.1| - 0.04 13.6 0.0 8.3 6.0 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.27 gi|289579832|ref|YP_003478298.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Wzy_C PF04932.15 gi|289579833|ref|YP_003478299.1| - 7.4e-13 48.4 8.2 7.4e-13 48.4 8.2 4.0 3 1 0 3 3 3 1 O-Antigen ligase DegT_DnrJ_EryC1 PF01041.17 gi|289579834|ref|YP_003478300.1| - 2e-119 399.2 0.0 2.4e-119 398.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|289579834|ref|YP_003478300.1| - 2.1e-10 40.4 0.0 3e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|289579834|ref|YP_003478300.1| - 1.2e-05 24.8 0.0 3.5e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|289579834|ref|YP_003478300.1| - 1.6e-05 23.6 0.0 2.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|289579834|ref|YP_003478300.1| - 3e-05 23.1 0.0 4.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|289579834|ref|YP_003478300.1| - 0.016 13.9 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Polysacc_synt_2 PF02719.15 gi|289579835|ref|YP_003478301.1| - 1.2e-103 346.3 0.0 1.4e-103 346.1 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|289579835|ref|YP_003478301.1| - 6.6e-24 84.7 0.0 9.9e-23 80.8 0.0 2.4 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289579835|ref|YP_003478301.1| - 2.1e-21 76.2 0.1 1.3e-20 73.6 0.1 1.9 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289579835|ref|YP_003478301.1| - 2.3e-16 60.1 0.1 7.3e-16 58.5 0.1 1.9 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|289579835|ref|YP_003478301.1| - 1.4e-10 40.8 1.2 4.9e-07 29.2 0.7 2.5 2 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|289579835|ref|YP_003478301.1| - 8e-10 38.3 0.0 2e-08 33.7 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|289579835|ref|YP_003478301.1| - 4.7e-08 33.1 0.0 7.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|289579835|ref|YP_003478301.1| - 5.9e-07 29.1 0.0 9.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|289579835|ref|YP_003478301.1| - 3e-05 23.7 0.1 9.2e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|289579835|ref|YP_003478301.1| - 0.00035 20.5 0.0 0.0008 19.4 0.0 1.5 1 0 0 1 1 1 1 KR domain TrkA_N PF02254.18 gi|289579835|ref|YP_003478301.1| - 0.0046 17.2 0.2 0.053 13.8 0.1 2.4 1 1 1 2 2 2 1 TrkA-N domain Methyltransf_11 PF08241.12 gi|289579835|ref|YP_003478301.1| - 0.048 14.3 0.0 0.1 13.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CTP_transf_3 PF02348.19 gi|289579836|ref|YP_003478302.1| - 1.1e-28 100.7 0.0 1.2e-28 100.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|289579836|ref|YP_003478302.1| - 8.5e-07 29.5 0.0 1.1e-06 29.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|289579836|ref|YP_003478302.1| - 6.4e-06 26.1 0.0 7.8e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATP-synt_10 PF05176.14 gi|289579836|ref|YP_003478302.1| - 0.014 14.6 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 ATP10 protein Epimerase_2 PF02350.19 gi|289579837|ref|YP_003478303.1| - 1.6e-81 273.9 0.0 1.8e-81 273.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DRTGG PF07085.12 gi|289579837|ref|YP_003478303.1| - 0.012 15.4 0.1 0.03 14.1 0.1 1.7 1 0 0 1 1 1 0 DRTGG domain Hexapep PF00132.24 gi|289579838|ref|YP_003478304.1| - 1.1e-12 47.1 5.8 4.1e-07 29.5 0.3 3.1 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289579838|ref|YP_003478304.1| - 6.7e-05 22.6 7.0 0.0059 16.3 0.5 3.0 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase NeuB PF03102.14 gi|289579839|ref|YP_003478305.1| - 2.4e-88 295.7 0.1 2.9e-88 295.4 0.1 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|289579839|ref|YP_003478305.1| - 1.1e-09 38.8 0.1 2.3e-09 37.8 0.1 1.6 1 0 0 1 1 1 1 SAF domain AP_endonuc_2 PF01261.24 gi|289579839|ref|YP_003478305.1| - 0.042 13.3 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel CREPT PF16566.5 gi|289579839|ref|YP_003478305.1| - 0.076 13.2 0.2 13 5.9 0.0 2.3 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour potato_inhibit PF00280.18 gi|289579839|ref|YP_003478305.1| - 0.17 12.6 0.0 0.35 11.6 0.0 1.5 1 0 0 1 1 1 0 Potato inhibitor I family ABC_tran PF00005.27 gi|289579840|ref|YP_003478306.1| - 3.7e-34 118.2 0.0 6.7e-34 117.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|289579840|ref|YP_003478306.1| - 4.9e-07 29.4 2.0 4.9e-06 26.1 2.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 gi|289579840|ref|YP_003478306.1| - 9.3e-07 28.8 8.7 1.5e-06 28.0 8.7 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region RsgA_GTPase PF03193.16 gi|289579840|ref|YP_003478306.1| - 3.1e-05 24.0 0.0 6.5e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|289579840|ref|YP_003478306.1| - 0.0086 15.8 1.4 0.12 12.0 1.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|289579840|ref|YP_003478306.1| - 0.0091 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|289579840|ref|YP_003478306.1| - 0.0094 16.2 0.4 0.13 12.6 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|289579840|ref|YP_003478306.1| - 0.016 15.0 0.3 1.5 8.6 0.1 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|289579840|ref|YP_003478306.1| - 0.022 14.8 0.1 0.075 13.1 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|289579840|ref|YP_003478306.1| - 0.041 14.3 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.6 gi|289579840|ref|YP_003478306.1| - 0.053 13.8 1.0 0.4 10.9 1.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TOBE_2 PF08402.10 gi|289579840|ref|YP_003478306.1| - 0.077 13.2 0.1 0.28 11.4 0.0 2.0 2 0 0 2 2 1 0 TOBE domain Zeta_toxin PF06414.12 gi|289579840|ref|YP_003478306.1| - 0.079 12.2 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 gi|289579840|ref|YP_003478306.1| - 0.083 13.4 0.5 0.18 12.3 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|289579840|ref|YP_003478306.1| - 0.1 13.0 0.1 0.37 11.1 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain ANAPC5 PF12862.7 gi|289579840|ref|YP_003478306.1| - 0.1 12.7 0.1 0.28 11.3 0.1 1.7 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 AAA_25 PF13481.6 gi|289579840|ref|YP_003478306.1| - 0.12 12.0 0.1 2.2 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|289579840|ref|YP_003478306.1| - 0.15 11.9 0.1 21 5.0 0.1 2.3 2 0 0 2 2 2 0 NTPase MscL PF01741.18 gi|289579840|ref|YP_003478306.1| - 6.3 7.1 8.0 1.3 9.3 0.9 2.6 2 1 1 3 3 3 0 Large-conductance mechanosensitive channel, MscL MarR_2 PF12802.7 gi|289579841|ref|YP_003478307.1| - 0.0011 18.8 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|289579841|ref|YP_003478307.1| - 0.05 13.9 0.0 0.062 13.7 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|289579841|ref|YP_003478307.1| - 0.063 13.4 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FPP PF05911.11 gi|289579843|ref|YP_003478309.1| - 0.0011 17.3 1.0 0.0018 16.6 1.0 1.3 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil PKcGMP_CC PF16808.5 gi|289579843|ref|YP_003478309.1| - 0.0079 16.0 1.7 0.0079 16.0 1.7 2.4 2 0 0 2 2 2 1 Coiled-coil N-terminus of cGMP-dependent protein kinase Spc7 PF08317.11 gi|289579843|ref|YP_003478309.1| - 0.0092 14.9 0.6 0.0092 14.9 0.6 1.8 2 0 0 2 2 2 1 Spc7 kinetochore protein SlyX PF04102.12 gi|289579843|ref|YP_003478309.1| - 0.055 14.1 0.6 0.24 12.0 0.1 2.3 2 0 0 2 2 2 0 SlyX Striatin PF08232.12 gi|289579843|ref|YP_003478309.1| - 0.073 13.7 3.3 0.15 12.7 3.3 1.5 1 1 0 1 1 1 0 Striatin family Lebercilin PF15619.6 gi|289579843|ref|YP_003478309.1| - 0.084 12.5 0.3 0.084 12.5 0.3 1.9 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DivIC PF04977.15 gi|289579843|ref|YP_003478309.1| - 0.18 11.6 3.1 0.63 9.9 0.2 2.3 2 0 0 2 2 2 0 Septum formation initiator ABC_tran_CTD PF16326.5 gi|289579843|ref|YP_003478309.1| - 0.21 11.9 8.5 0.36 11.1 1.4 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain ADIP PF11559.8 gi|289579843|ref|YP_003478309.1| - 0.42 10.7 4.7 0.11 12.6 1.0 1.9 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DASH_Spc19 PF08287.11 gi|289579843|ref|YP_003478309.1| - 0.67 9.8 7.6 0.14 12.1 2.7 2.1 2 0 0 2 2 2 0 Spc19 TMF_DNA_bd PF12329.8 gi|289579843|ref|YP_003478309.1| - 0.74 9.9 5.2 0.17 11.9 0.5 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CENP-Q PF13094.6 gi|289579843|ref|YP_003478309.1| - 0.83 9.8 12.4 0.89 9.7 9.2 2.3 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DHR10 PF18595.1 gi|289579843|ref|YP_003478309.1| - 6.6 6.8 11.1 1.6 8.8 0.5 2.9 3 0 0 3 3 3 0 Designed helical repeat protein 10 domain PdxA PF04166.12 gi|289579844|ref|YP_003478310.1| - 0.088 12.2 0.0 0.099 12.0 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA TrmB PF01978.19 gi|289579845|ref|YP_003478311.1| - 0.0015 18.4 0.0 0.27 11.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB UPF0175 PF03683.13 gi|289579846|ref|YP_003478312.1| - 5.3e-24 83.7 0.1 5.8e-24 83.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) VAPB_antitox PF02697.14 gi|289579847|ref|YP_003478313.1| - 7.5e-18 65.1 1.9 9.4e-18 64.8 1.9 1.1 1 0 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|289579848|ref|YP_003478314.1| - 4.3e-08 33.7 0.0 5.7e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|289579848|ref|YP_003478314.1| - 0.13 12.6 0.0 0.96 9.8 0.0 1.9 1 1 0 1 1 1 0 PIN like domain HTH_20 PF12840.7 gi|289579849|ref|YP_003478315.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RHH_1 PF01402.21 gi|289579851|ref|YP_003478317.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.4 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_15 PF12324.8 gi|289579851|ref|YP_003478317.1| - 0.095 12.7 0.2 0.097 12.6 0.2 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase SWIM PF04434.17 gi|289579853|ref|YP_003478319.1| - 0.00025 20.6 0.1 0.00054 19.6 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger DUF1678 PF07913.11 gi|289579853|ref|YP_003478319.1| - 0.0026 17.5 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1678) Cut8 PF08559.10 gi|289579853|ref|YP_003478319.1| - 0.0041 16.8 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 Cut8, nuclear proteasome tether protein HalOD1 PF18545.1 gi|289579854|ref|YP_003478320.1| - 1.1e-19 70.4 0.1 1.4e-19 70.1 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 TOBE PF03459.17 gi|289579854|ref|YP_003478320.1| - 0.082 13.2 0.1 0.45 10.8 0.1 2.0 2 0 0 2 2 2 0 TOBE domain GDP_Man_Dehyd PF16363.5 gi|289579855|ref|YP_003478321.1| - 3.5e-66 223.9 0.0 4.4e-66 223.6 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|289579855|ref|YP_003478321.1| - 2.2e-61 207.4 0.1 2.6e-61 207.2 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289579855|ref|YP_003478321.1| - 3e-26 92.1 0.0 3.8e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|289579855|ref|YP_003478321.1| - 2.2e-15 56.5 0.2 3.1e-15 56.1 0.2 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|289579855|ref|YP_003478321.1| - 1.1e-14 54.3 0.0 3.7e-14 52.5 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|289579855|ref|YP_003478321.1| - 1.1e-10 41.1 1.1 1.1e-08 34.6 0.1 2.3 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|289579855|ref|YP_003478321.1| - 3.9e-10 39.9 0.6 1.5e-08 34.8 0.6 2.2 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|289579855|ref|YP_003478321.1| - 1.3e-05 24.9 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|289579855|ref|YP_003478321.1| - 2.8e-05 24.1 0.1 9e-05 22.5 0.1 1.7 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|289579855|ref|YP_003478321.1| - 0.00061 19.3 0.4 0.0013 18.3 0.4 1.6 1 1 0 1 1 1 1 short chain dehydrogenase 3HCDH_N PF02737.18 gi|289579855|ref|YP_003478321.1| - 0.0033 17.4 0.1 0.0075 16.2 0.1 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|289579855|ref|YP_003478321.1| - 0.015 15.8 0.3 0.11 13.0 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|289579855|ref|YP_003478321.1| - 0.027 14.1 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.14 gi|289579855|ref|YP_003478321.1| - 0.029 14.0 0.1 0.061 12.9 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|289579855|ref|YP_003478321.1| - 0.042 13.1 1.4 1 8.6 0.4 2.2 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|289579855|ref|YP_003478321.1| - 0.056 13.7 0.5 0.18 12.1 0.5 2.0 1 1 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|289579855|ref|YP_003478321.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_trans_4_4 PF13579.6 gi|289579855|ref|YP_003478321.1| - 0.099 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Type_III_YscX PF09474.10 gi|289579855|ref|YP_003478321.1| - 0.17 12.2 0.0 0.3 11.4 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system YscX (type_III_YscX) PAS_4 PF08448.10 gi|289579856|ref|YP_003478322.1| - 4.1e-15 56.0 0.2 1.8e-14 53.9 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|289579856|ref|YP_003478322.1| - 8.1e-13 48.9 0.0 1.7e-12 47.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|289579856|ref|YP_003478322.1| - 8.5e-12 45.1 0.0 1.9e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|289579856|ref|YP_003478322.1| - 5.9e-11 42.5 0.0 5.2e-10 39.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|289579856|ref|YP_003478322.1| - 2.2e-10 40.3 0.0 7.2e-10 38.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|289579856|ref|YP_003478322.1| - 3.1e-06 27.4 0.0 1.5e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|289579856|ref|YP_003478322.1| - 1.8e-05 24.7 0.5 4e-05 23.6 0.5 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|289579856|ref|YP_003478322.1| - 0.0003 20.9 0.2 0.0041 17.3 0.0 2.3 2 1 1 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|289579856|ref|YP_003478322.1| - 0.0046 16.9 0.1 0.014 15.3 0.1 1.8 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain Spc7 PF08317.11 gi|289579856|ref|YP_003478322.1| - 0.0096 14.8 1.8 0.016 14.1 1.8 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein TBCC_N PF16752.5 gi|289579856|ref|YP_003478322.1| - 0.025 15.0 1.8 0.045 14.2 1.8 1.3 1 0 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain PAS_12 PF18095.1 gi|289579856|ref|YP_003478322.1| - 0.033 13.8 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain Nop PF01798.18 gi|289579856|ref|YP_003478322.1| - 0.16 11.4 0.1 0.24 10.8 0.1 1.2 1 0 0 1 1 1 0 snoRNA binding domain, fibrillarin HATPase_c_3 PF13589.6 gi|289579856|ref|YP_003478322.1| - 0.18 11.7 0.0 0.64 9.8 0.0 1.9 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3655 PF12379.8 gi|289579856|ref|YP_003478322.1| - 3.9 7.8 6.3 1.7 9.0 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3655) DUF4330 PF14221.6 gi|289579858|ref|YP_003478324.1| - 5.8e-30 104.7 4.4 1.8e-17 64.1 0.1 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4330) KCT2 PF17818.1 gi|289579860|ref|YP_003478326.1| - 0.062 13.4 1.6 0.068 13.3 1.6 1.0 1 0 0 1 1 1 0 Keratinocyte-associated gene product SR-25 PF10500.9 gi|289579861|ref|YP_003478327.1| - 0.007 16.0 11.3 0.017 14.8 11.3 1.7 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein U79_P34 PF03064.16 gi|289579861|ref|YP_003478327.1| - 0.85 8.9 15.6 0.13 11.6 10.1 2.4 3 0 0 3 3 3 0 HSV U79 / HCMV P34 Med19 PF10278.9 gi|289579861|ref|YP_003478327.1| - 1.5 8.7 28.8 3.4 7.6 28.8 1.5 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 Zip PF02535.22 gi|289579861|ref|YP_003478327.1| - 8.8 5.4 11.9 0.14 11.3 4.5 1.9 2 0 0 2 2 2 0 ZIP Zinc transporter DUF111 PF01969.17 gi|289579863|ref|YP_003478329.1| - 1.3e-127 426.0 15.8 3.8e-127 424.4 15.8 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF111 Zip PF02535.22 gi|289579863|ref|YP_003478329.1| - 0.38 9.9 21.6 0.57 9.3 21.6 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter FAM76 PF16046.5 gi|289579863|ref|YP_003478329.1| - 4.5 6.5 6.0 6.5 6.0 6.0 1.2 1 0 0 1 1 1 0 FAM76 protein AAA PF00004.29 gi|289579864|ref|YP_003478330.1| - 6e-100 330.9 0.0 7.8e-49 165.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|289579864|ref|YP_003478330.1| - 1.4e-30 105.3 0.0 6.7e-30 103.1 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|289579864|ref|YP_003478330.1| - 2.8e-28 97.5 2.7 7.6e-14 51.2 0.8 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|289579864|ref|YP_003478330.1| - 1.4e-15 56.8 0.2 7.9e-15 54.4 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|289579864|ref|YP_003478330.1| - 3.3e-15 56.2 0.0 7.6e-07 29.0 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|289579864|ref|YP_003478330.1| - 4.1e-14 53.3 1.2 1.2e-05 25.8 0.3 4.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|289579864|ref|YP_003478330.1| - 2.1e-13 50.4 2.2 2e-05 24.6 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|289579864|ref|YP_003478330.1| - 3.8e-13 49.9 0.0 1.1e-05 25.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|289579864|ref|YP_003478330.1| - 2e-11 44.3 0.5 0.0094 16.2 0.0 4.2 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|289579864|ref|YP_003478330.1| - 6.3e-11 42.6 0.0 9.1e-05 22.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|289579864|ref|YP_003478330.1| - 1.2e-10 41.1 0.0 0.00041 19.7 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|289579864|ref|YP_003478330.1| - 7.4e-08 32.3 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|289579864|ref|YP_003478330.1| - 1.9e-07 31.1 0.0 0.0075 16.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|289579864|ref|YP_003478330.1| - 6.4e-07 29.1 1.3 2.2 7.8 0.0 4.4 4 0 0 4 4 4 1 AAA domain RNA_helicase PF00910.22 gi|289579864|ref|YP_003478330.1| - 7.2e-07 29.6 0.0 0.062 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|289579864|ref|YP_003478330.1| - 7.4e-07 29.8 0.0 0.087 13.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|289579864|ref|YP_003478330.1| - 1.2e-06 28.1 0.1 0.055 12.8 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|289579864|ref|YP_003478330.1| - 4.5e-06 26.3 0.0 0.11 12.0 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|289579864|ref|YP_003478330.1| - 6.1e-06 26.0 0.1 0.16 11.7 0.0 3.2 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|289579864|ref|YP_003478330.1| - 8.1e-06 26.2 0.0 0.034 14.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|289579864|ref|YP_003478330.1| - 9.3e-06 25.5 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|289579864|ref|YP_003478330.1| - 1.6e-05 24.4 1.1 0.5 9.7 0.0 3.6 4 0 0 4 4 3 2 KaiC TsaE PF02367.17 gi|289579864|ref|YP_003478330.1| - 2.8e-05 24.1 0.0 0.19 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|289579864|ref|YP_003478330.1| - 3.9e-05 22.9 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|289579864|ref|YP_003478330.1| - 4.3e-05 23.3 0.0 0.13 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|289579864|ref|YP_003478330.1| - 6.4e-05 22.5 0.4 0.44 10.0 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein AAA_30 PF13604.6 gi|289579864|ref|YP_003478330.1| - 7e-05 22.6 0.1 0.51 10.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|289579864|ref|YP_003478330.1| - 7.2e-05 22.7 0.3 0.01 15.8 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain ABC_tran PF00005.27 gi|289579864|ref|YP_003478330.1| - 7.5e-05 23.3 0.0 0.52 10.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|289579864|ref|YP_003478330.1| - 7.8e-05 22.6 0.0 0.3 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|289579864|ref|YP_003478330.1| - 0.00011 21.5 0.0 0.12 11.5 0.0 2.5 3 0 0 3 3 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|289579864|ref|YP_003478330.1| - 0.00012 22.0 0.0 1.1 9.1 0.0 3.8 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|289579864|ref|YP_003478330.1| - 0.00034 20.0 0.0 0.4 9.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|289579864|ref|YP_003478330.1| - 0.00041 19.5 0.1 0.48 9.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|289579864|ref|YP_003478330.1| - 0.00045 20.2 0.3 0.57 10.1 0.0 3.2 4 0 0 4 4 2 1 NACHT domain AAA_17 PF13207.6 gi|289579864|ref|YP_003478330.1| - 0.00048 20.6 0.0 0.98 9.8 0.0 3.3 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|289579864|ref|YP_003478330.1| - 0.00061 19.1 0.4 0.98 8.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|289579864|ref|YP_003478330.1| - 0.0013 18.9 0.0 2.4 8.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|289579864|ref|YP_003478330.1| - 0.002 18.1 0.2 3.6 7.5 0.0 3.2 2 1 0 2 2 2 0 NTPase IPT PF01745.16 gi|289579864|ref|YP_003478330.1| - 0.0021 17.5 0.9 0.54 9.6 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase AAA_19 PF13245.6 gi|289579864|ref|YP_003478330.1| - 0.0029 17.9 0.8 4.3 7.7 0.0 2.9 2 1 1 3 3 2 0 AAA domain Bac_DnaA PF00308.18 gi|289579864|ref|YP_003478330.1| - 0.0053 16.6 0.1 3.9 7.3 0.0 2.7 3 0 0 3 3 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|289579864|ref|YP_003478330.1| - 0.0074 16.0 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase KAP_NTPase PF07693.14 gi|289579864|ref|YP_003478330.1| - 0.0096 15.2 0.1 1.9 7.6 0.0 2.8 2 2 1 4 4 4 1 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|289579864|ref|YP_003478330.1| - 0.016 14.9 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|289579864|ref|YP_003478330.1| - 0.025 14.6 0.0 9.3 6.2 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Torsin PF06309.11 gi|289579864|ref|YP_003478330.1| - 0.035 14.2 0.0 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Hydin_ADK PF17213.3 gi|289579864|ref|YP_003478330.1| - 0.038 14.3 0.0 4.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain CPT PF07931.12 gi|289579864|ref|YP_003478330.1| - 0.045 13.6 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein SKI PF01202.22 gi|289579864|ref|YP_003478330.1| - 0.047 13.8 0.0 11 6.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Zot PF05707.12 gi|289579864|ref|YP_003478330.1| - 0.053 13.2 0.0 6.2 6.4 0.0 2.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Rad17 PF03215.15 gi|289579864|ref|YP_003478330.1| - 0.06 13.3 0.0 11 5.9 0.0 2.5 2 1 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|289579864|ref|YP_003478330.1| - 0.067 13.3 0.0 6.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.16 gi|289579864|ref|YP_003478330.1| - 0.12 11.2 0.1 2.2 7.1 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.21 gi|289579864|ref|YP_003478330.1| - 0.18 11.5 0.3 68 3.1 0.0 3.5 3 1 1 4 4 3 0 Guanylate kinase Arch_fla_DE PF04659.13 gi|289579864|ref|YP_003478330.1| - 0.23 11.3 0.1 1.3 9.0 0.0 2.3 3 0 0 3 3 1 0 Archaeal flagella protein EamA PF00892.20 gi|289579866|ref|YP_003478332.1| - 9e-40 136.0 31.9 5.9e-22 78.3 10.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|289579866|ref|YP_003478332.1| - 0.011 15.8 0.6 0.011 15.8 0.6 2.4 2 0 0 2 2 2 0 Putative transmembrane family 234 PaaX PF07848.12 gi|289579867|ref|YP_003478333.1| - 0.09 13.0 0.3 0.15 12.3 0.3 1.4 1 0 0 1 1 1 0 PaaX-like protein ABC_tran PF00005.27 gi|289579868|ref|YP_003478334.1| - 7.2e-32 110.8 0.0 1.3e-31 109.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289579868|ref|YP_003478334.1| - 2.3e-19 69.7 0.2 4.5e-19 68.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289579868|ref|YP_003478334.1| - 1.8e-07 31.3 0.9 6.7e-05 22.8 0.5 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289579868|ref|YP_003478334.1| - 4.6e-05 23.7 0.6 0.0004 20.7 0.6 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289579868|ref|YP_003478334.1| - 0.00054 19.5 0.1 0.0018 17.7 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|289579868|ref|YP_003478334.1| - 0.015 15.7 1.2 0.04 14.3 0.5 2.1 2 1 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|289579868|ref|YP_003478334.1| - 0.046 14.0 1.3 1.5 9.1 0.1 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|289579868|ref|YP_003478334.1| - 0.055 13.5 0.0 2.2 8.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|289579868|ref|YP_003478334.1| - 0.088 12.2 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AIG1 PF04548.16 gi|289579868|ref|YP_003478334.1| - 0.16 11.3 0.1 0.25 10.6 0.1 1.3 1 0 0 1 1 1 0 AIG1 family ABC_tran PF00005.27 gi|289579869|ref|YP_003478335.1| - 4.4e-24 85.5 0.0 7.8e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289579869|ref|YP_003478335.1| - 5e-17 62.2 0.0 1.1e-16 61.1 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289579869|ref|YP_003478335.1| - 4.5e-06 26.7 1.5 6.8e-05 22.8 1.5 2.3 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289579869|ref|YP_003478335.1| - 0.00039 20.7 0.2 0.026 14.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289579869|ref|YP_003478335.1| - 0.0099 16.3 0.3 0.028 14.8 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|289579869|ref|YP_003478335.1| - 0.019 15.0 0.1 0.065 13.3 0.1 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|289579869|ref|YP_003478335.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|289579869|ref|YP_003478335.1| - 0.09 12.3 0.0 14 5.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|289579869|ref|YP_003478335.1| - 0.12 12.3 0.0 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|289579870|ref|YP_003478336.1| - 1e-35 123.2 13.0 1.5e-35 122.6 9.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289579870|ref|YP_003478336.1| - 0.00057 19.8 0.0 0.00057 19.8 0.0 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|289579871|ref|YP_003478337.1| - 5.3e-41 140.4 12.8 5.3e-41 140.4 12.8 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|289579871|ref|YP_003478337.1| - 4.1 7.8 7.8 5.5 7.3 0.1 3.1 3 0 0 3 3 3 0 Sigma factor regulator N-terminal SBP_bac_5 PF00496.22 gi|289579872|ref|YP_003478338.1| - 1.4e-69 234.9 2.5 1.7e-69 234.6 2.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RVT_3 PF13456.6 gi|289579873|ref|YP_003478339.1| - 5.2e-05 23.0 0.0 7.5e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|289579873|ref|YP_003478339.1| - 0.014 15.6 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 RNase H DUF2240 PF09999.9 gi|289579874|ref|YP_003478340.1| - 1.9e-50 170.3 0.1 2.1e-50 170.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Na_H_Exchanger PF00999.21 gi|289579876|ref|YP_003478342.1| - 6e-50 170.1 49.4 1.6e-49 168.7 49.4 1.6 1 1 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579876|ref|YP_003478342.1| - 2.1e-13 50.6 1.5 4.1e-13 49.6 1.5 1.5 1 0 0 1 1 1 1 TrkA-N domain DUF4010 PF13194.6 gi|289579876|ref|YP_003478342.1| - 0.00024 20.9 10.5 0.00024 20.9 10.5 3.0 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) Shikimate_DH PF01488.20 gi|289579876|ref|YP_003478342.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Na_H_Exchanger PF00999.21 gi|289579877|ref|YP_003478343.1| - 1e-32 113.4 44.8 1.4e-32 112.9 44.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579877|ref|YP_003478343.1| - 3.6e-17 62.7 0.2 8.8e-17 61.4 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain Nucleoporin_C PF03177.14 gi|289579877|ref|YP_003478343.1| - 0.087 11.5 0.1 0.15 10.8 0.1 1.3 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal Na_H_Exchanger PF00999.21 gi|289579878|ref|YP_003478344.1| - 1.4e-31 109.7 47.9 1.8e-31 109.3 47.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579878|ref|YP_003478344.1| - 1.5e-13 51.0 0.1 3.5e-13 49.8 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.21 gi|289579879|ref|YP_003478345.1| - 1.5e-52 178.7 39.9 1.9e-52 178.4 39.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579879|ref|YP_003478345.1| - 3.1e-14 53.2 0.7 2.4e-13 50.3 0.3 2.3 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|289579879|ref|YP_003478345.1| - 0.04 14.4 0.0 0.092 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Na_H_Exchanger PF00999.21 gi|289579880|ref|YP_003478346.1| - 1e-34 120.0 49.2 1.3e-34 119.6 49.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579880|ref|YP_003478346.1| - 7.6e-11 42.3 0.1 7.6e-11 42.3 0.1 2.6 3 0 0 3 3 3 1 TrkA-N domain Na_H_Exchanger PF00999.21 gi|289579881|ref|YP_003478347.1| - 1.1e-48 166.0 43.8 1.4e-48 165.6 43.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289579881|ref|YP_003478347.1| - 5.3e-16 58.9 5.2 1.9e-15 57.1 3.4 2.5 2 0 0 2 2 2 1 TrkA-N domain DUF4212 PF13937.6 gi|289579881|ref|YP_003478347.1| - 8.2 6.9 9.2 0.78 10.2 0.3 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4212) MGS PF02142.22 gi|289579882|ref|YP_003478348.1| - 2.5e-13 50.0 0.0 3e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain Glyoxalase PF00903.25 gi|289579883|ref|YP_003478349.1| - 4.6e-14 52.7 0.0 5.7e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289579883|ref|YP_003478349.1| - 1.8e-08 34.6 0.0 2.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|289579883|ref|YP_003478349.1| - 1.9e-05 24.5 0.0 0.0036 17.2 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|289579883|ref|YP_003478349.1| - 8.6e-05 23.3 0.0 0.00016 22.4 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|289579883|ref|YP_003478349.1| - 0.0014 18.7 0.2 0.0034 17.5 0.2 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain zf-ribbon_3 PF13248.6 gi|289579884|ref|YP_003478350.1| - 0.0013 18.1 0.6 0.0022 17.4 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|289579884|ref|YP_003478350.1| - 0.0046 16.9 0.9 0.0067 16.4 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|289579884|ref|YP_003478350.1| - 0.013 15.3 0.4 0.018 14.9 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|289579884|ref|YP_003478350.1| - 0.033 14.2 0.9 0.052 13.6 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|289579884|ref|YP_003478350.1| - 0.32 10.9 0.1 0.32 10.9 0.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|289579884|ref|YP_003478350.1| - 0.73 10.0 4.6 2.3 8.4 4.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain OMPdecase PF00215.24 gi|289579885|ref|YP_003478351.1| - 7.4e-34 117.3 0.0 9e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family zf-B_box PF00643.24 gi|289579887|ref|YP_003478353.1| - 0.0036 17.4 4.3 0.0036 17.4 4.3 2.1 1 1 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.16 gi|289579887|ref|YP_003478353.1| - 0.0057 16.5 2.6 0.0057 16.5 2.6 1.9 2 0 0 2 2 2 1 HIT zinc finger zf-RRPl_C4 PF17026.5 gi|289579887|ref|YP_003478353.1| - 0.049 13.7 3.4 0.059 13.5 3.4 1.1 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type Antimicrobial25 PF16839.5 gi|289579887|ref|YP_003478353.1| - 0.1 12.7 5.9 0.077 13.1 2.0 2.0 1 1 1 2 2 2 0 Nematode antimicrobial peptide DZR PF12773.7 gi|289579887|ref|YP_003478353.1| - 0.22 11.6 11.2 1.4 9.0 6.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|289579887|ref|YP_003478353.1| - 0.28 11.1 9.1 1.5 8.7 9.1 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.13 gi|289579887|ref|YP_003478353.1| - 4 5.2 4.5 4.1 5.1 4.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 GTP_EFTU PF00009.27 gi|289579888|ref|YP_003478354.1| - 3.1e-35 121.5 0.0 4.2e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|289579888|ref|YP_003478354.1| - 4.3e-12 46.2 2.2 1e-11 45.0 0.5 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|289579888|ref|YP_003478354.1| - 7.3e-07 29.5 0.0 4.6e-06 26.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|289579888|ref|YP_003478354.1| - 0.0034 17.3 0.1 0.86 9.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Polysacc_deac_1 PF01522.21 gi|289579888|ref|YP_003478354.1| - 0.038 13.9 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide deacetylase MMR_HSR1 PF01926.23 gi|289579888|ref|YP_003478354.1| - 0.041 14.0 0.0 0.18 11.9 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|289579888|ref|YP_003478354.1| - 0.045 13.5 0.4 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Phage_TTP_13 PF16463.5 gi|289579890|ref|YP_003478356.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 Phage tail tube protein family HAD_2 PF13419.6 gi|289579891|ref|YP_003478357.1| - 1.6e-25 90.2 0.0 2.5e-25 89.6 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289579891|ref|YP_003478357.1| - 8.9e-16 58.8 0.0 1.7e-15 57.9 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289579891|ref|YP_003478357.1| - 9e-10 38.5 0.0 1.7e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289579891|ref|YP_003478357.1| - 2.4e-08 34.6 0.6 3.1e-08 34.3 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|289579891|ref|YP_003478357.1| - 0.065 13.1 0.1 2.7 7.8 0.0 2.2 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Dimerisation2 PF16864.5 gi|289579892|ref|YP_003478358.1| - 0.019 14.9 0.1 0.055 13.4 0.0 1.8 1 1 0 1 1 1 0 Dimerisation domain MCH PF02289.16 gi|289579893|ref|YP_003478359.1| - 2.3e-112 375.3 0.0 2.6e-112 375.2 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HMA PF00403.26 gi|289579894|ref|YP_003478360.1| - 4.7e-15 55.8 0.7 5.2e-15 55.6 0.7 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thiamine_BP PF01910.17 gi|289579895|ref|YP_003478361.1| - 4e-23 81.1 0.8 4.6e-23 80.9 0.8 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HalOD1 PF18545.1 gi|289579895|ref|YP_003478361.1| - 0.0017 18.6 2.4 0.0029 17.8 0.6 2.0 1 1 2 3 3 3 1 Halobacterial output domain 1 gpW PF02831.15 gi|289579895|ref|YP_003478361.1| - 0.084 12.8 0.7 0.084 12.8 0.7 1.6 2 0 0 2 2 2 0 gpW HalOD1 PF18545.1 gi|289579896|ref|YP_003478362.1| - 7.5e-22 77.4 0.1 9.8e-22 77.0 0.1 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Methyltrn_RNA_3 PF02598.17 gi|289579897|ref|YP_003478363.1| - 4.4e-69 233.2 0.0 5e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|289579897|ref|YP_003478363.1| - 0.12 12.2 0.3 0.25 11.2 0.3 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.22 gi|289579898|ref|YP_003478364.1| - 1.3e-109 366.6 0.1 4e-109 365.0 0.1 1.7 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|289579899|ref|YP_003478365.1| - 6.9e-46 156.4 0.3 7.9e-46 156.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|289579900|ref|YP_003478366.1| - 3.5e-16 59.3 3.1 4.6e-15 55.8 3.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 SSrecog PF03531.14 gi|289579900|ref|YP_003478366.1| - 0.1 12.5 1.1 0.18 11.8 1.1 1.5 1 1 0 1 1 1 0 Structure-specific recognition protein (SSRP1) PB1 PF00564.24 gi|289579900|ref|YP_003478366.1| - 0.11 12.5 0.2 0.13 12.2 0.2 1.1 1 0 0 1 1 1 0 PB1 domain Ribosomal_L2_C PF03947.18 gi|289579901|ref|YP_003478367.1| - 1.9e-46 157.3 2.5 2.9e-46 156.8 2.5 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|289579901|ref|YP_003478367.1| - 1.1e-18 67.0 0.0 5.4e-18 64.7 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Hist_rich_Ca-bd PF10529.9 gi|289579901|ref|YP_003478367.1| - 0.16 12.2 1.3 0.33 11.2 1.3 1.6 1 0 0 1 1 1 0 Histidine-rich Calcium-binding repeat region Ribosomal_S19 PF00203.21 gi|289579902|ref|YP_003478368.1| - 7.8e-31 105.8 0.0 1.1e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|289579903|ref|YP_003478369.1| - 1.5e-20 73.4 0.0 1.8e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|289579904|ref|YP_003478370.1| - 3.2e-21 75.6 0.6 7.7e-21 74.4 0.6 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|289579904|ref|YP_003478370.1| - 2.1e-16 59.5 0.0 4.8e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|289579904|ref|YP_003478370.1| - 0.042 13.7 1.4 0.098 12.5 0.2 2.3 3 0 0 3 3 3 0 KH domain KH_5 PF13184.6 gi|289579904|ref|YP_003478370.1| - 0.088 12.9 0.0 0.65 10.1 0.1 2.4 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L29 PF00831.23 gi|289579905|ref|YP_003478371.1| - 3.9e-17 61.9 0.2 4.9e-17 61.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.13 gi|289579905|ref|YP_003478371.1| - 0.041 14.0 0.8 0.056 13.5 0.4 1.4 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 UPF0086 PF01868.16 gi|289579906|ref|YP_003478372.1| - 1.2e-27 95.6 0.0 1.4e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Anti-TRAP PF15777.5 gi|289579906|ref|YP_003478372.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Cul7 PF11515.8 gi|289579906|ref|YP_003478372.1| - 0.15 12.3 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 Mouse development and cellular proliferation protein Cullin-7 Ribosomal_S17 PF00366.20 gi|289579907|ref|YP_003478373.1| - 3.5e-25 87.9 1.6 4.5e-25 87.5 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|289579907|ref|YP_003478373.1| - 8.5e-06 26.1 0.0 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|289579908|ref|YP_003478374.1| - 6.7e-37 126.3 0.3 8.2e-37 126.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|289579909|ref|YP_003478375.1| - 7.6e-24 84.0 0.0 9.9e-24 83.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|289579909|ref|YP_003478375.1| - 2.3e-06 27.4 0.6 4.6e-06 26.4 0.6 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_S4e PF00900.20 gi|289579910|ref|YP_003478376.1| - 3.9e-22 77.9 0.0 9.1e-22 76.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|289579910|ref|YP_003478376.1| - 2.5e-11 43.5 0.1 4.1e-11 42.8 0.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|289579910|ref|YP_003478376.1| - 2.1e-05 24.1 0.0 3.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|289579910|ref|YP_003478376.1| - 0.021 14.8 0.5 0.064 13.2 0.5 1.9 1 0 0 1 1 1 0 KOW motif S4_2 PF13275.6 gi|289579910|ref|YP_003478376.1| - 0.077 12.8 0.0 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.21 gi|289579911|ref|YP_003478377.1| - 5.2e-21 74.6 0.0 1.1e-20 73.6 0.0 1.6 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|289579911|ref|YP_003478377.1| - 2.8e-16 59.6 0.1 4.8e-16 58.8 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|289579912|ref|YP_003478378.1| - 6.6e-11 41.8 3.2 8e-11 41.5 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|289579912|ref|YP_003478378.1| - 0.0075 16.2 0.4 0.0092 15.9 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.19 gi|289579913|ref|YP_003478379.1| - 3.7e-23 81.9 0.0 4.6e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|289579914|ref|YP_003478380.1| - 1.9e-27 95.8 1.7 4.9e-14 52.8 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|289579914|ref|YP_003478380.1| - 0.16 12.2 3.0 1.4 9.1 0.2 3.0 2 1 1 3 3 3 0 Hsp20/alpha crystallin family HMA PF00403.26 gi|289579914|ref|YP_003478380.1| - 0.5 10.8 3.3 0.98 9.9 0.4 2.5 3 0 0 3 3 3 0 Heavy-metal-associated domain Ribosomal_L32e PF01655.18 gi|289579915|ref|YP_003478381.1| - 1.4e-32 112.3 0.3 3.3e-32 111.1 0.2 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|289579915|ref|YP_003478381.1| - 9.7e-13 48.5 0.6 9.7e-13 48.5 0.6 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|289579915|ref|YP_003478381.1| - 7.4e-08 31.9 2.1 0.0028 17.4 0.1 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|289579915|ref|YP_003478381.1| - 2.2e-06 27.4 0.0 1.1e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|289579915|ref|YP_003478381.1| - 7.1e-06 26.0 0.7 1.6e-05 24.9 0.7 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|289579915|ref|YP_003478381.1| - 0.00029 21.0 0.0 0.0013 19.0 0.0 2.1 2 1 1 3 3 3 1 Pathogenicity locus HHH_8 PF14716.6 gi|289579915|ref|YP_003478381.1| - 0.025 14.9 1.1 1.3 9.4 0.1 2.8 2 1 1 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|289579915|ref|YP_003478381.1| - 0.053 13.8 0.1 12 6.3 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif LytR_C PF13399.6 gi|289579915|ref|YP_003478381.1| - 0.21 12.6 2.9 0.73 10.9 0.4 2.7 2 1 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator Ribosomal_L19e PF01280.20 gi|289579916|ref|YP_003478382.1| - 5e-58 195.2 7.7 5.6e-58 195.1 7.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|289579916|ref|YP_003478382.1| - 0.0013 18.4 1.1 0.0013 18.4 1.1 2.0 2 0 0 2 2 2 1 Short C-terminal domain Lant_dehydr_C PF14028.6 gi|289579916|ref|YP_003478382.1| - 0.031 13.8 0.4 0.036 13.6 0.4 1.0 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term SAND PF01342.21 gi|289579916|ref|YP_003478382.1| - 0.044 13.5 0.6 0.077 12.7 0.6 1.4 1 0 0 1 1 1 0 SAND domain DUF3253 PF11625.8 gi|289579916|ref|YP_003478382.1| - 0.073 13.3 1.4 0.34 11.2 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) AbiEi_4 PF13338.6 gi|289579916|ref|YP_003478382.1| - 0.081 13.1 0.7 2.9 8.1 0.4 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Ribosomal_L5e PF17144.4 gi|289579917|ref|YP_003478383.1| - 8.9e-31 107.1 0.0 2.6e-19 69.8 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|289579917|ref|YP_003478383.1| - 1.5e-08 35.0 0.0 2.3e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|289579918|ref|YP_003478384.1| - 2.8e-23 81.7 0.9 7.1e-23 80.4 0.2 2.0 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|289579918|ref|YP_003478384.1| - 3e-22 77.9 0.2 5.4e-22 77.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|289579919|ref|YP_003478385.1| - 5.9e-09 35.7 0.0 1e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|289579920|ref|YP_003478386.1| - 4.3e-19 69.4 0.3 4.3e-19 69.4 0.3 1.5 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|289579920|ref|YP_003478386.1| - 0.078 12.4 0.1 0.078 12.4 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|289579921|ref|YP_003478387.1| - 3.7e-70 236.6 19.4 4.4e-70 236.3 19.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|289579921|ref|YP_003478387.1| - 1.2e-09 37.8 0.0 3.6e-09 36.3 0.0 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Phage_integrase PF00589.22 gi|289579923|ref|YP_003478389.1| - 1.9e-18 66.8 0.0 3.5e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|289579923|ref|YP_003478389.1| - 2.5e-06 27.7 0.1 1.6e-05 25.1 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|289579923|ref|YP_003478389.1| - 0.0027 18.1 0.0 0.0071 16.8 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF1338 PF07063.13 gi|289579924|ref|YP_003478390.1| - 0.0095 15.2 0.7 0.013 14.7 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1338) Alanine_zipper PF11839.8 gi|289579924|ref|YP_003478390.1| - 0.046 14.1 3.5 0.11 12.9 3.5 1.6 1 0 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein ZapB PF06005.12 gi|289579924|ref|YP_003478390.1| - 0.18 12.2 10.6 0.75 10.3 10.7 2.2 1 1 0 1 1 1 0 Cell division protein ZapB DivIC PF04977.15 gi|289579924|ref|YP_003478390.1| - 2.2 8.1 8.2 3.1 7.7 0.1 2.8 3 0 0 3 3 3 0 Septum formation initiator MCM PF00493.23 gi|289579925|ref|YP_003478391.1| - 1.3e-53 181.4 0.0 3.4e-53 180.0 0.0 1.6 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|289579925|ref|YP_003478391.1| - 1e-18 67.4 0.7 1.7e-18 66.6 0.7 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|289579925|ref|YP_003478391.1| - 1.6e-17 63.7 0.0 4.2e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain AAA_5 PF07728.14 gi|289579925|ref|YP_003478391.1| - 5.3e-07 29.7 0.1 2.4e-06 27.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|289579925|ref|YP_003478391.1| - 2.5e-06 27.0 0.3 0.0093 15.4 0.0 2.6 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|289579925|ref|YP_003478391.1| - 0.0034 17.8 0.2 0.018 15.4 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain CtsR_C PF17727.1 gi|289579925|ref|YP_003478391.1| - 0.1 12.7 0.0 0.36 11.0 0.0 1.9 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain AAA PF00004.29 gi|289579925|ref|YP_003478391.1| - 0.12 12.8 0.6 1.1 9.7 0.6 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|289579925|ref|YP_003478391.1| - 0.12 12.0 0.2 0.4 10.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain MCM_bind PF09739.9 gi|289579925|ref|YP_003478391.1| - 0.13 10.6 0.0 0.97 7.8 0.0 2.0 2 0 0 2 2 2 0 Mini-chromosome maintenance replisome factor HTH_36 PF13730.6 gi|289579925|ref|YP_003478391.1| - 0.16 12.0 0.1 0.42 10.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_22 PF13401.6 gi|289579925|ref|YP_003478391.1| - 0.18 12.1 0.2 3.3 8.0 0.0 2.6 1 1 0 2 2 2 0 AAA domain SMC_Nse1 PF07574.13 gi|289579925|ref|YP_003478391.1| - 0.19 11.6 0.1 0.38 10.6 0.1 1.4 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex HTH_20 PF12840.7 gi|289579926|ref|YP_003478392.1| - 3.4e-06 27.0 0.7 0.00018 21.5 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_39 PF14090.6 gi|289579926|ref|YP_003478392.1| - 0.094 12.5 0.3 3.3 7.5 0.2 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain HNH PF01844.23 gi|289579927|ref|YP_003478393.1| - 4.8e-13 49.1 4.5 7.3e-13 48.5 4.5 1.2 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|289579927|ref|YP_003478393.1| - 3.4e-08 33.2 0.4 5.3e-08 32.6 0.4 1.3 1 0 0 1 1 1 1 HNH endonuclease RecA_dep_nuc PF16786.5 gi|289579927|ref|YP_003478393.1| - 0.012 15.7 0.6 0.018 15.2 0.6 1.3 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease HNH_2 PF13391.6 gi|289579927|ref|YP_003478393.1| - 0.023 14.8 3.3 0.26 11.5 3.0 2.4 2 1 0 2 2 2 0 HNH endonuclease HNH_4 PF13395.6 gi|289579927|ref|YP_003478393.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease HTH_23 PF13384.6 gi|289579929|ref|YP_003478395.1| - 3.5e-05 23.5 0.1 0.00017 21.2 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain LacI PF00356.21 gi|289579929|ref|YP_003478395.1| - 0.00063 19.5 0.1 0.0018 18.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.12 gi|289579929|ref|YP_003478395.1| - 0.0017 18.0 0.5 0.0026 17.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|289579929|ref|YP_003478395.1| - 0.0035 17.2 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|289579929|ref|YP_003478395.1| - 0.0044 16.8 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Terminase_5 PF06056.12 gi|289579929|ref|YP_003478395.1| - 0.0076 16.1 0.1 0.019 14.8 0.0 1.7 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|289579929|ref|YP_003478395.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix GerE PF00196.19 gi|289579929|ref|YP_003478395.1| - 0.027 14.0 0.0 0.055 13.0 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|289579929|ref|YP_003478395.1| - 0.028 14.5 1.1 0.032 14.3 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|289579929|ref|YP_003478395.1| - 0.048 13.2 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|289579929|ref|YP_003478395.1| - 0.05 13.6 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|289579929|ref|YP_003478395.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|289579929|ref|YP_003478395.1| - 0.082 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_29 PF13551.6 gi|289579929|ref|YP_003478395.1| - 0.095 12.7 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|289579929|ref|YP_003478395.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|289579933|ref|YP_003478399.1| - 0.0001 22.1 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|289579933|ref|YP_003478399.1| - 0.0031 17.2 0.2 0.041 13.6 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|289579933|ref|YP_003478399.1| - 0.0064 16.8 0.2 0.0076 16.6 0.2 1.2 1 0 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|289579933|ref|YP_003478399.1| - 0.0093 15.6 1.1 0.019 14.6 0.7 1.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|289579933|ref|YP_003478399.1| - 0.013 15.6 0.1 0.038 14.1 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|289579933|ref|YP_003478399.1| - 0.016 15.1 0.1 0.029 14.2 0.1 1.5 1 1 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|289579933|ref|YP_003478399.1| - 0.018 14.9 0.3 0.34 10.9 0.1 2.3 2 1 0 2 2 2 0 HTH domain LTXXQ PF07813.12 gi|289579933|ref|YP_003478399.1| - 0.036 14.8 0.1 0.051 14.3 0.1 1.3 1 0 0 1 1 1 0 LTXXQ motif family protein HTH_12 PF08461.10 gi|289579933|ref|YP_003478399.1| - 0.04 13.9 0.1 0.056 13.4 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain OrfB_Zn_ribbon PF07282.11 gi|289579934|ref|YP_003478400.1| - 0.003 17.4 0.6 0.0036 17.2 0.6 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1206 PF06724.11 gi|289579936|ref|YP_003478402.1| - 2.2 8.4 7.7 5.4 7.2 1.5 2.1 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) zf-RRN7 PF11781.8 gi|289579938|ref|YP_003478404.1| - 0.39 10.4 3.1 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Phage_integrase PF00589.22 gi|289579939|ref|YP_003478405.1| - 5.6e-11 42.5 0.0 7.1e-11 42.2 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|289579939|ref|YP_003478405.1| - 0.0038 17.3 0.0 0.0054 16.8 0.0 1.2 1 0 0 1 1 1 1 Integrase S1_2 PF13509.6 gi|289579943|ref|YP_003478409.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 S1 domain SLD5_C PF16922.5 gi|289579945|ref|YP_003478411.1| - 0.09 13.0 0.0 0.2 11.9 0.0 1.5 1 1 1 2 2 2 0 DNA replication complex GINS protein SLD5 C-terminus DUF433 PF04255.14 gi|289579947|ref|YP_003478413.1| - 2e-13 50.0 0.1 2.6e-13 49.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DivIC PF04977.15 gi|289579948|ref|YP_003478414.1| - 0.067 13.0 3.8 0.13 12.1 3.3 1.7 1 1 0 1 1 1 0 Septum formation initiator DUF1230 PF06799.11 gi|289579948|ref|YP_003478414.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved in the green lineage and diatoms 27 COX4_pro PF03626.14 gi|289579950|ref|YP_003478416.1| - 1.5e-10 41.4 10.9 1.8e-10 41.1 10.9 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF1516 PF07457.11 gi|289579950|ref|YP_003478416.1| - 0.21 11.8 6.4 0.25 11.6 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) DUF2070 PF09843.9 gi|289579950|ref|YP_003478416.1| - 0.89 7.8 7.8 0.94 7.7 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Insulin_TMD PF17870.1 gi|289579950|ref|YP_003478416.1| - 4.6 7.4 7.1 6.4 6.9 1.2 2.4 2 1 0 2 2 2 0 Insulin receptor trans-membrane segment COX1 PF00115.20 gi|289579951|ref|YP_003478417.1| - 3.8e-123 411.5 77.5 3.8e-123 411.5 77.5 3.0 2 1 1 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|289579951|ref|YP_003478417.1| - 1.3e-18 67.8 18.6 1.3e-18 67.8 18.6 3.3 3 1 1 4 4 4 1 Cytochrome c oxidase subunit III COX2 PF00116.20 gi|289579952|ref|YP_003478418.1| - 1.3e-15 57.3 0.0 3.6e-15 55.9 0.0 1.7 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|289579952|ref|YP_003478418.1| - 0.0074 16.4 0.0 0.1 12.7 0.0 2.3 2 0 0 2 2 2 1 Cupredoxin-like domain COX14 PF14880.6 gi|289579952|ref|YP_003478418.1| - 0.069 13.0 0.2 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Cytochrome oxidase c assembly ADK PF00406.22 gi|289579955|ref|YP_003478421.1| - 1.7e-44 151.6 0.0 2.1e-44 151.3 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|289579955|ref|YP_003478421.1| - 9.1e-22 77.9 2.4 9.3e-22 77.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289579955|ref|YP_003478421.1| - 6.8e-09 36.4 0.1 1.8e-08 35.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|289579955|ref|YP_003478421.1| - 2.1e-06 27.9 0.2 0.00013 22.1 0.2 2.4 1 1 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|289579955|ref|YP_003478421.1| - 0.0032 17.4 0.1 0.013 15.5 0.1 2.0 2 1 0 2 2 2 1 Adenylate kinase, active site lid dNK PF01712.19 gi|289579955|ref|YP_003478421.1| - 0.0061 16.4 1.3 0.56 10.0 1.1 2.9 2 1 0 2 2 2 1 Deoxynucleoside kinase PduV-EutP PF10662.9 gi|289579955|ref|YP_003478421.1| - 0.01 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Thymidylate_kin PF02223.17 gi|289579955|ref|YP_003478421.1| - 0.026 14.2 1.2 3.7 7.2 0.0 3.0 3 0 0 3 3 3 0 Thymidylate kinase Ploopntkinase3 PF18751.1 gi|289579955|ref|YP_003478421.1| - 0.027 14.4 0.0 0.048 13.6 0.0 1.6 1 1 0 1 1 1 0 P-loop Nucleotide Kinase3 SKI PF01202.22 gi|289579955|ref|YP_003478421.1| - 0.037 14.2 1.1 0.2 11.8 1.1 2.1 1 1 0 1 1 1 0 Shikimate kinase RuvB_N PF05496.12 gi|289579955|ref|YP_003478421.1| - 0.047 13.4 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Guanylate_kin PF00625.21 gi|289579955|ref|YP_003478421.1| - 0.085 12.5 0.1 0.25 11.0 0.1 1.8 2 0 0 2 2 2 0 Guanylate kinase EMC3_TMCO1 PF01956.16 gi|289579957|ref|YP_003478423.1| - 2.2e-39 134.9 0.5 3.6e-39 134.2 0.5 1.3 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|289579957|ref|YP_003478423.1| - 0.01 15.7 4.6 0.27 11.1 4.6 2.2 1 1 0 1 1 1 0 60Kd inner membrane protein HemX PF04375.14 gi|289579957|ref|YP_003478423.1| - 0.018 14.4 0.4 0.027 13.8 0.4 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4746 PF15928.5 gi|289579957|ref|YP_003478423.1| - 0.044 13.2 2.2 0.079 12.4 2.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) PocR PF10114.9 gi|289579957|ref|YP_003478423.1| - 0.5 10.1 1.3 0.86 9.4 1.3 1.3 1 0 0 1 1 1 0 Sensory domain found in PocR Golgin_A5 PF09787.9 gi|289579957|ref|YP_003478423.1| - 0.61 9.5 7.7 0.96 8.9 7.7 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 MIF4G_like_2 PF09090.11 gi|289579957|ref|YP_003478423.1| - 2.1 7.8 6.1 0.64 9.4 3.3 1.5 2 0 0 2 2 2 0 MIF4G like OmpH PF03938.14 gi|289579957|ref|YP_003478423.1| - 2.6 8.4 9.2 5.5 7.3 9.2 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Adaptin_binding PF10199.9 gi|289579957|ref|YP_003478423.1| - 4.9 7.8 11.3 7.8 7.1 11.3 1.6 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 Cytidylate_kin2 PF13189.6 gi|289579958|ref|YP_003478424.1| - 2e-18 67.1 0.0 2.8e-16 60.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|289579958|ref|YP_003478424.1| - 1.7e-15 57.7 0.0 2.2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|289579958|ref|YP_003478424.1| - 5.2e-12 46.3 0.0 1.7e-11 44.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|289579958|ref|YP_003478424.1| - 2.6e-07 30.6 0.1 0.0006 19.6 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|289579958|ref|YP_003478424.1| - 4.6e-07 30.0 0.0 9.4e-07 29.0 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|289579958|ref|YP_003478424.1| - 3.3e-05 24.1 0.2 0.0019 18.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289579958|ref|YP_003478424.1| - 0.0045 17.2 0.2 0.031 14.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|289579958|ref|YP_003478424.1| - 0.011 15.8 0.3 0.048 13.8 0.3 1.9 1 1 0 1 1 1 0 Shikimate kinase AAA_16 PF13191.6 gi|289579958|ref|YP_003478424.1| - 0.014 15.8 0.2 0.02 15.3 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|289579958|ref|YP_003478424.1| - 0.015 15.0 0.1 1.1 9.0 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase AAA PF00004.29 gi|289579958|ref|YP_003478424.1| - 0.03 14.7 0.0 0.046 14.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289579958|ref|YP_003478424.1| - 0.033 14.5 0.0 0.047 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|289579958|ref|YP_003478424.1| - 0.097 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 T2SSE PF00437.20 gi|289579958|ref|YP_003478424.1| - 0.099 11.7 0.0 1.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|289579958|ref|YP_003478424.1| - 0.11 11.8 0.0 0.28 10.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 gi|289579958|ref|YP_003478424.1| - 0.16 12.4 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|289579958|ref|YP_003478424.1| - 0.17 11.6 0.1 0.83 9.3 0.2 1.9 1 1 1 2 2 2 0 AAA domain TruB_N PF01509.18 gi|289579959|ref|YP_003478425.1| - 9.1e-21 74.8 0.5 9.7e-12 45.5 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|289579959|ref|YP_003478425.1| - 5.7e-19 68.0 0.0 1.2e-18 67.0 0.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|289579959|ref|YP_003478425.1| - 2.7e-08 33.8 0.0 5.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|289579959|ref|YP_003478425.1| - 9.1e-07 28.8 0.7 1.5e-06 28.0 0.7 1.4 1 0 0 1 1 1 1 PUA domain DUF3701 PF12482.8 gi|289579959|ref|YP_003478425.1| - 0.1 12.7 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 Phage integrase protein N6-adenineMlase PF10237.9 gi|289579961|ref|YP_003478427.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase DUF4191 PF13829.6 gi|289579963|ref|YP_003478429.1| - 0.025 13.9 0.0 0.037 13.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) DUF5335 PF17269.2 gi|289579963|ref|YP_003478429.1| - 0.13 12.1 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Pox_RNA_Pol_22 PF05273.13 gi|289579963|ref|YP_003478429.1| - 0.3 10.8 0.0 0.37 10.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus RNA polymerase 22 kDa subunit HTH_38 PF13936.6 gi|289579964|ref|YP_003478430.1| - 0.0027 17.4 0.0 0.0085 15.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|289579964|ref|YP_003478430.1| - 0.0052 16.8 0.0 0.026 14.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.12 gi|289579964|ref|YP_003478430.1| - 0.0091 15.9 0.1 0.034 14.1 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|289579964|ref|YP_003478430.1| - 0.024 14.4 0.0 0.1 12.5 0.0 2.1 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|289579964|ref|YP_003478430.1| - 0.026 14.3 0.0 0.065 13.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_17 PF12728.7 gi|289579964|ref|YP_003478430.1| - 0.032 14.4 0.0 0.15 12.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|289579964|ref|YP_003478430.1| - 0.048 13.2 0.0 0.44 10.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|289579964|ref|YP_003478430.1| - 0.05 13.7 0.0 1.3 9.2 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|289579964|ref|YP_003478430.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4231 PF14015.6 gi|289579965|ref|YP_003478431.1| - 0.0071 16.8 2.3 3.2 8.3 0.2 4.5 2 1 1 3 3 3 1 Protein of unknown function (DUF4231) Hpt PF01627.23 gi|289579965|ref|YP_003478431.1| - 0.11 12.8 21.1 8.9 6.7 1.2 5.6 2 1 5 7 7 7 0 Hpt domain AbiEi_1 PF09407.10 gi|289579965|ref|YP_003478431.1| - 0.26 11.6 7.9 1.1e+02 3.1 0.0 5.1 1 1 5 6 6 6 0 AbiEi antitoxin C-terminal domain FYDLN_acid PF09538.10 gi|289579966|ref|YP_003478432.1| - 0.011 16.4 0.2 0.014 16.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF1854 PF08909.11 gi|289579966|ref|YP_003478432.1| - 0.075 12.9 0.2 9.3 6.1 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1854) DUF1610 PF07754.11 gi|289579968|ref|YP_003478434.1| - 0.0047 16.9 1.0 0.14 12.2 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-Mss51 PF13824.6 gi|289579968|ref|YP_003478434.1| - 0.026 14.6 3.8 0.026 14.6 3.8 1.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.6 gi|289579968|ref|YP_003478434.1| - 0.032 14.7 1.7 3.5 8.2 0.0 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain PriA_CRR PF18319.1 gi|289579968|ref|YP_003478434.1| - 0.051 13.6 2.4 0.78 9.8 0.0 2.3 2 1 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain Sgf11 PF08209.11 gi|289579968|ref|YP_003478434.1| - 0.49 10.0 3.5 6.7 6.4 0.1 2.1 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) Mu-like_Com PF10122.9 gi|289579968|ref|YP_003478434.1| - 1.3 8.5 4.8 9.3 5.8 1.0 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DZR PF12773.7 gi|289579969|ref|YP_003478435.1| - 0.0073 16.3 1.1 0.009 16.0 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289579969|ref|YP_003478435.1| - 0.015 15.0 4.8 0.047 13.4 4.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain ESAG1 PF03238.13 gi|289579969|ref|YP_003478435.1| - 0.076 12.4 0.0 0.077 12.4 0.0 1.0 1 0 0 1 1 1 0 ESAG protein HypA PF01155.19 gi|289579969|ref|YP_003478435.1| - 0.11 12.5 0.5 0.12 12.4 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|289579969|ref|YP_003478435.1| - 0.2 11.6 3.5 5.3 7.1 0.8 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf_UBZ PF18439.1 gi|289579969|ref|YP_003478435.1| - 0.32 10.6 3.8 0.32 10.6 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-dskA_traR PF01258.17 gi|289579969|ref|YP_003478435.1| - 0.84 9.6 11.3 0.17 11.8 2.8 2.2 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|289579969|ref|YP_003478435.1| - 1.1 8.8 8.3 2.4 7.7 0.3 2.1 1 1 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|289579969|ref|YP_003478435.1| - 1.9 8.3 6.7 12 5.7 0.3 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-Mss51 PF13824.6 gi|289579969|ref|YP_003478435.1| - 2.9 8.0 7.0 7.5 6.7 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|289579969|ref|YP_003478435.1| - 3.5 7.8 8.2 1 9.5 0.5 2.3 1 1 2 3 3 3 0 Zinc ribbon domain zf-HYPF PF07503.12 gi|289579969|ref|YP_003478435.1| - 5.9 6.8 8.4 26 4.7 0.8 2.2 1 1 1 2 2 2 0 HypF finger NACHT PF05729.12 gi|289579971|ref|YP_003478437.1| - 0.014 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|289579971|ref|YP_003478437.1| - 0.076 13.6 0.0 0.21 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|289579971|ref|YP_003478437.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Arc_PepC_II PF06847.11 gi|289579974|ref|YP_003478440.1| - 0.22 12.0 1.0 2 9.0 0.1 2.3 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II PQQ_2 PF13360.6 gi|289579976|ref|YP_003478442.1| - 7.2e-15 55.2 0.2 1.9e-07 30.9 0.0 2.7 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|289579976|ref|YP_003478442.1| - 1.2e-10 40.8 3.0 0.045 13.7 0.3 6.2 6 0 0 6 6 6 3 PQQ enzyme repeat MHC_II_alpha PF00993.20 gi|289579976|ref|YP_003478442.1| - 4.1 7.1 9.0 0.27 10.9 0.3 3.4 3 1 1 4 4 4 0 Class II histocompatibility antigen, alpha domain DUF4231 PF14015.6 gi|289579977|ref|YP_003478443.1| - 1.8 9.1 4.8 0.49 10.9 1.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) LPD16 PF18830.1 gi|289579978|ref|YP_003478444.1| - 0.014 15.4 0.1 0.025 14.5 0.0 1.4 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 16 Pilin_N PF07790.11 gi|289579979|ref|YP_003478445.1| - 1.6e-16 61.0 4.9 3.9e-16 59.7 4.9 1.8 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|289579980|ref|YP_003478446.1| - 7.1e-17 62.1 2.3 7.1e-17 62.1 2.3 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Mrr_N PF14338.6 gi|289579982|ref|YP_003478448.1| - 0.00015 21.8 0.0 0.00018 21.6 0.0 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_45 PF14947.6 gi|289579982|ref|YP_003478448.1| - 0.0002 21.3 0.0 0.00024 21.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.14 gi|289579982|ref|YP_003478448.1| - 0.0028 17.6 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|289579982|ref|YP_003478448.1| - 0.0044 16.9 0.1 0.0054 16.6 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|289579982|ref|YP_003478448.1| - 0.0084 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289579982|ref|YP_003478448.1| - 0.0093 15.8 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|289579982|ref|YP_003478448.1| - 0.034 14.7 0.0 0.042 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain PaaX PF07848.12 gi|289579982|ref|YP_003478448.1| - 0.039 14.2 0.0 0.046 13.9 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein DUF2250 PF10007.9 gi|289579982|ref|YP_003478448.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1495 PF07381.11 gi|289579982|ref|YP_003478448.1| - 0.077 12.8 0.1 0.46 10.3 0.1 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Fe_dep_repress PF01325.19 gi|289579982|ref|YP_003478448.1| - 0.083 13.1 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sec61_beta PF03911.16 gi|289579982|ref|YP_003478448.1| - 0.1 12.7 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 Sec61beta family Replic_Relax PF13814.6 gi|289579982|ref|YP_003478448.1| - 0.11 12.6 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF505 PF04458.12 gi|289579982|ref|YP_003478448.1| - 0.11 10.8 0.0 0.12 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Rio2_N PF09202.11 gi|289579982|ref|YP_003478448.1| - 0.13 12.5 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Rio2, N-terminal RQC PF09382.10 gi|289579982|ref|YP_003478448.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 RQC domain DUF4364 PF14277.6 gi|289579982|ref|YP_003478448.1| - 0.17 11.6 0.0 0.2 11.4 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Phage_int_SAM_1 PF02899.17 gi|289579983|ref|YP_003478449.1| - 9.6e-12 45.1 0.3 3.2e-11 43.4 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|289579983|ref|YP_003478449.1| - 6.1e-10 39.1 0.2 1.5e-09 37.8 0.2 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|289579983|ref|YP_003478449.1| - 1.4e-09 38.3 0.0 2e-07 31.4 0.0 2.2 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain HalOD1 PF18545.1 gi|289579984|ref|YP_003478450.1| - 1.6e-22 79.6 0.3 1.7e-22 79.4 0.3 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 zf-Di19 PF05605.12 gi|289579985|ref|YP_003478451.1| - 0.007 16.6 0.1 0.0082 16.4 0.1 1.1 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Nmad3 PF18754.1 gi|289579986|ref|YP_003478452.1| - 2.6e-40 138.6 0.0 3.2e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 TraW_N PF12477.8 gi|289579986|ref|YP_003478452.1| - 0.0088 16.0 0.4 0.021 14.8 0.4 1.6 1 0 0 1 1 1 1 Sex factor F TraW protein N terminal Hexapep PF00132.24 gi|289579987|ref|YP_003478453.1| - 2.7e-08 33.2 3.5 7e-08 31.9 0.3 2.8 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289579987|ref|YP_003478453.1| - 6.1e-07 29.1 5.1 6.4e-07 29.0 0.6 2.7 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.14 gi|289579988|ref|YP_003478454.1| - 1.7e-41 142.4 0.3 2e-41 142.1 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289579988|ref|YP_003478454.1| - 3e-10 40.5 0.6 1.2e-08 35.4 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|289579988|ref|YP_003478454.1| - 0.00022 21.2 1.8 0.54 10.2 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|289579988|ref|YP_003478454.1| - 0.1 11.9 2.7 4.3 6.6 0.3 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Fe_dep_repr_C PF02742.15 gi|289579989|ref|YP_003478455.1| - 3.1e-28 97.7 1.4 4.6e-28 97.1 0.6 1.7 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|289579989|ref|YP_003478455.1| - 2.7e-20 72.3 1.3 3.6e-20 71.9 0.3 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|289579989|ref|YP_003478455.1| - 4.8e-11 42.7 0.7 1.5e-10 41.1 0.1 2.1 2 0 0 2 2 2 1 FeoA domain MarR PF01047.22 gi|289579989|ref|YP_003478455.1| - 9.8e-07 28.6 0.0 1.9e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|289579989|ref|YP_003478455.1| - 1.5e-06 28.0 0.0 4.4e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289579989|ref|YP_003478455.1| - 7e-06 25.8 0.1 1.4e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|289579989|ref|YP_003478455.1| - 2.6e-05 24.1 0.1 5.7e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|289579989|ref|YP_003478455.1| - 3.7e-05 24.0 0.0 8.2e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|289579989|ref|YP_003478455.1| - 9.1e-05 22.9 0.2 0.00025 21.5 0.2 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.15 gi|289579989|ref|YP_003478455.1| - 0.00011 21.8 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.6 gi|289579989|ref|YP_003478455.1| - 0.00015 21.3 0.0 0.00029 20.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|289579989|ref|YP_003478455.1| - 0.00026 21.0 0.0 0.0011 19.0 0.0 2.1 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_IclR PF09339.10 gi|289579989|ref|YP_003478455.1| - 0.00036 20.3 0.0 0.0013 18.4 0.0 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289579989|ref|YP_003478455.1| - 0.00084 19.1 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289579989|ref|YP_003478455.1| - 0.0015 18.6 0.1 0.0085 16.1 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain GntR PF00392.21 gi|289579989|ref|YP_003478455.1| - 0.0026 17.4 0.0 0.0077 15.9 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Put_DNA-bind_N PF06971.13 gi|289579989|ref|YP_003478455.1| - 0.0042 17.1 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus DUF2250 PF10007.9 gi|289579989|ref|YP_003478455.1| - 0.0048 17.0 0.2 0.0085 16.2 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|289579989|ref|YP_003478455.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_13 PF11972.8 gi|289579989|ref|YP_003478455.1| - 0.012 15.7 0.2 0.037 14.1 0.1 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Rio2_N PF09202.11 gi|289579989|ref|YP_003478455.1| - 0.014 15.6 0.2 0.032 14.4 0.1 1.7 2 0 0 2 2 1 0 Rio2, N-terminal FaeA PF04703.12 gi|289579989|ref|YP_003478455.1| - 0.016 15.6 0.0 0.032 14.6 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Topoisom_bac PF01131.20 gi|289579989|ref|YP_003478455.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase FeoC PF09012.10 gi|289579989|ref|YP_003478455.1| - 0.023 14.8 0.0 0.051 13.7 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_12 PF08461.10 gi|289579989|ref|YP_003478455.1| - 0.027 14.4 0.3 0.079 12.9 0.3 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|289579989|ref|YP_003478455.1| - 0.029 14.3 0.0 0.095 12.7 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Penicillinase_R PF03965.16 gi|289579989|ref|YP_003478455.1| - 0.031 14.6 0.0 0.074 13.4 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor HTH_23 PF13384.6 gi|289579989|ref|YP_003478455.1| - 0.034 13.9 0.0 0.14 12.0 0.0 2.1 1 1 1 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|289579989|ref|YP_003478455.1| - 0.042 13.7 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HxlR PF01638.17 gi|289579989|ref|YP_003478455.1| - 0.043 13.7 0.1 0.082 12.8 0.1 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_10 PF04967.12 gi|289579989|ref|YP_003478455.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|289579989|ref|YP_003478455.1| - 0.13 12.1 0.0 0.42 10.4 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain CtsR PF05848.11 gi|289579989|ref|YP_003478455.1| - 0.16 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 CtsR N-terminal HTH domain HTH_45 PF14947.6 gi|289579989|ref|YP_003478455.1| - 0.21 11.6 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Zip PF02535.22 gi|289579990|ref|YP_003478456.1| - 2.5e-06 27.0 14.0 2.5e-06 27.0 14.0 2.4 2 1 1 3 3 3 2 ZIP Zinc transporter AWPM-19 PF05512.11 gi|289579990|ref|YP_003478456.1| - 0.36 11.0 7.9 0.14 12.3 3.5 2.3 2 0 0 2 2 2 0 AWPM-19-like family DUF2723 PF11028.8 gi|289579990|ref|YP_003478456.1| - 1.5 8.7 8.3 0.21 11.5 0.5 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF2723) HrcA_DNA-bdg PF03444.15 gi|289579991|ref|YP_003478457.1| - 5.7e-36 122.0 0.0 8.2e-36 121.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|289579991|ref|YP_003478457.1| - 1.1e-08 35.2 0.0 2e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|289579991|ref|YP_003478457.1| - 1.4e-06 28.2 0.0 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|289579991|ref|YP_003478457.1| - 0.029 14.4 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|289579991|ref|YP_003478457.1| - 0.034 14.0 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.13 gi|289579991|ref|YP_003478457.1| - 0.065 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_24 PF13412.6 gi|289579991|ref|YP_003478457.1| - 0.074 12.6 0.3 0.16 11.5 0.3 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DNA_topoisoIV PF00521.20 gi|289579992|ref|YP_003478458.1| - 5.8e-156 519.7 0.0 7.3e-156 519.3 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|289579992|ref|YP_003478458.1| - 2.4e-79 260.6 11.8 2.1e-13 49.5 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF465 PF04325.13 gi|289579992|ref|YP_003478458.1| - 0.11 12.5 3.9 0.35 10.9 3.9 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF465) THOC7 PF05615.13 gi|289579992|ref|YP_003478458.1| - 2 8.7 9.1 0.54 10.5 3.6 2.3 1 1 0 2 2 2 0 Tho complex subunit 7 DNA_gyraseB PF00204.25 gi|289579993|ref|YP_003478459.1| - 1.2e-60 204.0 1.0 2.6e-60 202.9 1.0 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|289579993|ref|YP_003478459.1| - 2.8e-30 104.3 0.0 6e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|289579993|ref|YP_003478459.1| - 7.7e-23 81.1 0.2 2.5e-22 79.5 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|289579993|ref|YP_003478459.1| - 1.2e-17 64.0 0.0 3.3e-17 62.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|289579993|ref|YP_003478459.1| - 9.5e-05 22.2 0.1 0.0002 21.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPW PF03779.14 gi|289579994|ref|YP_003478460.1| - 0.0013 18.3 27.9 0.0046 16.5 8.7 3.8 2 2 1 3 3 3 2 SPW repeat Cyt_bd_oxida_II PF02322.15 gi|289579994|ref|YP_003478460.1| - 0.0079 15.6 6.9 0.01 15.3 6.9 1.1 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF2892 PF11127.8 gi|289579994|ref|YP_003478460.1| - 0.023 14.7 2.0 0.023 14.7 2.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) DUF3188 PF11384.8 gi|289579994|ref|YP_003478460.1| - 0.05 13.3 1.5 2.1 8.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) DUF202 PF02656.15 gi|289579994|ref|YP_003478460.1| - 0.68 10.4 14.3 2.7 8.5 2.2 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF202) DUF4536 PF15055.6 gi|289579994|ref|YP_003478460.1| - 3.4 8.0 10.4 2.7 8.3 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) TraQ PF09679.10 gi|289579994|ref|YP_003478460.1| - 3.7 7.5 5.8 1.1 9.3 0.3 2.3 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF2182 PF09948.9 gi|289579994|ref|YP_003478460.1| - 6.3 6.6 10.8 1.5 8.7 3.5 2.0 1 1 1 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) TFIIB PF00382.19 gi|289579995|ref|YP_003478461.1| - 9.6e-47 156.9 2.9 8.4e-26 89.8 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289579995|ref|YP_003478461.1| - 4.4e-19 67.7 3.4 8.6e-19 66.8 3.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|289579995|ref|YP_003478461.1| - 0.0036 17.0 0.5 0.0082 15.8 0.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain HARE-HTH PF05066.13 gi|289579995|ref|YP_003478461.1| - 0.011 16.1 0.1 0.52 10.7 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain PhnA_Zn_Ribbon PF08274.12 gi|289579995|ref|YP_003478461.1| - 0.04 13.9 2.1 0.084 12.8 2.1 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|289579995|ref|YP_003478461.1| - 0.058 13.5 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain RB_B PF01857.20 gi|289579995|ref|YP_003478461.1| - 0.076 13.1 0.0 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain Sigma70_r4 PF04545.16 gi|289579995|ref|YP_003478461.1| - 0.076 12.6 2.9 0.37 10.3 0.1 3.4 3 1 1 4 4 4 0 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.7 gi|289579995|ref|YP_003478461.1| - 0.077 13.0 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|289579995|ref|YP_003478461.1| - 0.094 13.1 1.3 0.17 12.3 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|289579995|ref|YP_003478461.1| - 0.096 12.5 0.8 0.7 9.8 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain DUF2318 PF10080.9 gi|289579995|ref|YP_003478461.1| - 0.11 12.6 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|289579995|ref|YP_003478461.1| - 0.12 12.9 0.0 0.29 11.7 0.0 1.8 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn-ribbon_8 PF09723.10 gi|289579995|ref|YP_003478461.1| - 0.94 9.7 3.5 6.9 6.9 0.4 2.5 1 1 0 2 2 2 0 Zinc ribbon domain RVT_3 PF13456.6 gi|289579996|ref|YP_003478462.1| - 2.1e-27 95.4 0.0 2.7e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|289579996|ref|YP_003478462.1| - 7.5e-12 45.6 0.0 2.2e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 RNase H DUF2205 PF10224.9 gi|289579997|ref|YP_003478463.1| - 0.055 13.5 0.0 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 Short coiled-coil protein PadR PF03551.14 gi|289579998|ref|YP_003478464.1| - 3.5e-17 62.1 0.4 5.4e-17 61.5 0.4 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|289579998|ref|YP_003478464.1| - 7.7e-05 23.1 0.0 0.00066 20.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 gi|289579998|ref|YP_003478464.1| - 0.00049 20.7 0.0 0.00062 20.4 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF1495 PF07381.11 gi|289579998|ref|YP_003478464.1| - 0.0059 16.4 0.0 0.0081 16.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|289579998|ref|YP_003478464.1| - 0.043 13.8 0.1 0.074 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Pyrophosphatase PF00719.19 gi|289579999|ref|YP_003478465.1| - 9.5e-51 171.8 1.4 1.1e-50 171.6 1.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.22 gi|289580001|ref|YP_003478467.1| - 1.2e-62 212.6 0.2 1.4e-62 212.3 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|289580001|ref|YP_003478467.1| - 0.003 17.0 2.1 0.024 14.0 0.3 2.6 2 1 0 2 2 2 1 Sulfatase DUF2990 PF11693.8 gi|289580001|ref|YP_003478467.1| - 0.048 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) TDH PF03347.13 gi|289580001|ref|YP_003478467.1| - 0.12 12.0 0.0 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Vibrio thermostable direct hemolysin DUF2063 PF09836.9 gi|289580001|ref|YP_003478467.1| - 0.13 12.5 0.1 0.28 11.4 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain DUF885 PF05960.11 gi|289580001|ref|YP_003478467.1| - 0.18 11.4 0.0 0.51 9.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF885) DUF371 PF04027.13 gi|289580002|ref|YP_003478468.1| - 2.5e-53 179.6 0.3 2.7e-53 179.5 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CpXC PF14353.6 gi|289580003|ref|YP_003478469.1| - 0.00014 21.8 1.3 0.00017 21.6 1.3 1.1 1 0 0 1 1 1 1 CpXC protein zinc_ribbon_4 PF13717.6 gi|289580003|ref|YP_003478469.1| - 0.0014 18.5 0.3 0.44 10.5 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Elf1 PF05129.13 gi|289580003|ref|YP_003478469.1| - 0.016 15.2 3.0 0.032 14.3 3.0 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 gi|289580003|ref|YP_003478469.1| - 0.023 15.5 2.2 3.5 8.7 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.7 gi|289580003|ref|YP_003478469.1| - 0.12 12.4 6.4 0.48 10.4 6.6 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HhH-GPD PF00730.25 gi|289580004|ref|YP_003478470.1| - 1e-15 58.1 0.0 2.1e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|289580004|ref|YP_003478470.1| - 1.6e-07 31.5 7.9 3.4e-07 30.4 7.9 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|289580004|ref|YP_003478470.1| - 4.3e-05 23.2 0.0 0.00013 21.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF732 PF05305.14 gi|289580004|ref|YP_003478470.1| - 0.042 14.2 1.2 0.097 13.1 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF732) HHH_5 PF14520.6 gi|289580004|ref|YP_003478470.1| - 0.11 13.1 0.0 0.68 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain PEMT PF04191.13 gi|289580005|ref|YP_003478471.1| - 4.7e-13 49.4 0.0 7.6e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 gi|289580005|ref|YP_003478471.1| - 0.0025 18.2 0.0 0.0043 17.4 0.0 1.5 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SBP_bac_8 PF13416.6 gi|289580006|ref|YP_003478472.1| - 8.4e-18 65.2 2.4 1.1e-17 64.8 2.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289580006|ref|YP_003478472.1| - 1.2e-16 60.9 0.7 1.5e-16 60.6 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289580006|ref|YP_003478472.1| - 1e-08 35.5 2.8 1.4e-08 35.1 2.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289580006|ref|YP_003478472.1| - 0.001 18.9 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|289580007|ref|YP_003478473.1| - 2.3e-37 128.6 0.0 1.1e-36 126.4 0.0 2.0 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|289580007|ref|YP_003478473.1| - 3.5e-13 49.5 1.5 1.1e-11 44.7 0.3 3.1 1 1 1 2 2 2 2 TOBE domain AAA_21 PF13304.6 gi|289580007|ref|YP_003478473.1| - 2.1e-06 27.8 0.4 0.023 14.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|289580007|ref|YP_003478473.1| - 0.0024 17.6 0.1 0.006 16.3 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|289580007|ref|YP_003478473.1| - 0.0025 17.3 0.0 0.18 11.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|289580007|ref|YP_003478473.1| - 0.0029 17.5 0.1 0.0054 16.7 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|289580007|ref|YP_003478473.1| - 0.004 17.5 0.0 0.0067 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289580007|ref|YP_003478473.1| - 0.0078 16.5 0.2 0.02 15.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|289580007|ref|YP_003478473.1| - 0.027 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain G-alpha PF00503.20 gi|289580007|ref|YP_003478473.1| - 0.029 13.5 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.29 gi|289580007|ref|YP_003478473.1| - 0.04 14.4 0.1 0.25 11.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|289580007|ref|YP_003478473.1| - 0.09 13.3 0.0 0.14 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|289580007|ref|YP_003478473.1| - 0.1 13.2 0.1 0.79 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289580007|ref|YP_003478473.1| - 0.11 12.7 0.1 0.28 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain Maff2 PF12750.7 gi|289580007|ref|YP_003478473.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Maff2 family Mg_chelatase PF01078.21 gi|289580007|ref|YP_003478473.1| - 0.12 11.7 0.0 0.32 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|289580007|ref|YP_003478473.1| - 0.14 12.4 4.4 5.2 7.4 0.4 3.7 3 1 0 3 3 2 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|289580007|ref|YP_003478473.1| - 0.2 11.3 0.0 0.33 10.6 0.0 1.3 2 0 0 2 2 2 0 AAA ATPase domain Myosin_N PF02736.19 gi|289580007|ref|YP_003478473.1| - 1.9 8.4 4.9 1.2 9.0 0.1 3.1 4 0 0 4 4 4 0 Myosin N-terminal SH3-like domain TOBE PF03459.17 gi|289580007|ref|YP_003478473.1| - 2.2 8.6 3.9 2.4 8.5 0.1 2.9 4 0 0 4 4 4 0 TOBE domain BPD_transp_1 PF00528.22 gi|289580008|ref|YP_003478474.1| - 2.7e-12 46.8 19.0 2.7e-12 46.8 19.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3566 PF12089.8 gi|289580008|ref|YP_003478474.1| - 0.93 9.9 19.7 5.1 7.5 0.9 3.6 3 0 0 3 3 3 0 Transmembrane domain of unknown function (DUF3566) BPD_transp_1 PF00528.22 gi|289580009|ref|YP_003478475.1| - 9.8e-14 51.5 15.6 9.8e-14 51.5 15.6 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PAS_3 PF08447.12 gi|289580010|ref|YP_003478476.1| - 7.5e-34 115.9 0.8 1.9e-13 50.5 0.1 5.2 5 0 0 5 5 5 3 PAS fold PAS_4 PF08448.10 gi|289580010|ref|YP_003478476.1| - 9.4e-34 116.0 7.2 7.4e-10 39.1 0.2 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|289580010|ref|YP_003478476.1| - 5.9e-31 106.8 0.9 1.5e-08 34.9 0.0 5.0 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.26 gi|289580010|ref|YP_003478476.1| - 3.2e-29 101.7 0.0 2e-27 95.9 0.0 3.1 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|289580010|ref|YP_003478476.1| - 6.1e-23 81.0 1.0 1.2e-07 31.7 0.1 4.7 4 0 0 4 4 4 4 PAS fold HisKA PF00512.25 gi|289580010|ref|YP_003478476.1| - 2.8e-10 40.1 0.1 2.8e-10 40.1 0.1 3.8 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|289580010|ref|YP_003478476.1| - 3.8e-08 33.2 0.4 0.00018 21.5 0.0 3.4 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.6 gi|289580010|ref|YP_003478476.1| - 0.00012 21.9 0.0 0.00028 20.7 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|289580010|ref|YP_003478476.1| - 0.01 15.8 0.0 0.052 13.5 0.0 2.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|289580010|ref|YP_003478476.1| - 0.035 14.3 2.4 1.1 9.4 0.0 3.8 4 1 0 4 4 4 0 PAS fold HATPase_c_3 PF13589.6 gi|289580010|ref|YP_003478476.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAA_11 PF13086.6 gi|289580010|ref|YP_003478476.1| - 0.13 12.1 0.1 0.35 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DMPK_coil PF08826.10 gi|289580010|ref|YP_003478476.1| - 1.5 9.0 6.3 20 5.4 0.1 3.5 3 0 0 3 3 3 0 DMPK coiled coil domain like OrfB_IS605 PF01385.19 gi|289580011|ref|YP_003478477.1| - 2.6e-25 89.0 0.0 7.8e-25 87.4 0.0 1.8 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289580011|ref|YP_003478477.1| - 2.1e-20 72.4 0.7 5.4e-20 71.1 0.7 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|289580011|ref|YP_003478477.1| - 0.001 19.3 0.7 0.0025 18.1 0.7 1.6 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|289580011|ref|YP_003478477.1| - 0.18 11.9 1.6 0.45 10.6 0.6 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family KH_7 PF17214.3 gi|289580012|ref|YP_003478478.1| - 8.1e-33 112.2 0.2 3.1e-29 100.7 0.1 2.8 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|289580012|ref|YP_003478478.1| - 1.4e-20 73.6 0.0 4e-20 72.2 0.0 1.8 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|289580012|ref|YP_003478478.1| - 8.2e-16 57.7 0.0 2.2e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|289580012|ref|YP_003478478.1| - 2.1e-14 54.0 2.7 9.5e-14 51.9 2.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|289580012|ref|YP_003478478.1| - 3.4e-12 46.2 0.0 5.6e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|289580012|ref|YP_003478478.1| - 5.5e-10 39.1 0.1 1e-09 38.2 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|289580012|ref|YP_003478478.1| - 3.4e-07 30.0 0.0 7.1e-06 25.8 0.0 2.4 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|289580012|ref|YP_003478478.1| - 6.7e-05 22.8 0.1 0.00024 21.0 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|289580012|ref|YP_003478478.1| - 0.023 14.6 0.1 0.053 13.4 0.1 1.6 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|289580012|ref|YP_003478478.1| - 0.14 12.0 0.0 0.41 10.5 0.0 1.8 1 0 0 1 1 1 0 KH domain LPD29 PF18847.1 gi|289580013|ref|YP_003478479.1| - 0.17 12.8 0.0 0.3 12.0 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 29 SPESP1 PF15754.5 gi|289580014|ref|YP_003478480.1| - 1.4 8.0 3.5 2.2 7.4 0.6 2.0 2 0 0 2 2 2 0 Sperm equatorial segment protein 1 NucS PF01939.16 gi|289580015|ref|YP_003478481.1| - 3e-62 209.9 0.0 3.1e-41 141.2 0.0 2.0 2 0 0 2 2 2 2 Endonuclease NucS YhcG_C PF06250.11 gi|289580015|ref|YP_003478481.1| - 0.042 13.7 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain MutS_V PF00488.21 gi|289580016|ref|YP_003478482.1| - 7.3e-78 260.9 0.1 1.2e-77 260.2 0.1 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|289580016|ref|YP_003478482.1| - 5.2e-39 134.4 1.1 9.6e-39 133.6 1.1 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|289580016|ref|YP_003478482.1| - 1.9e-36 124.7 0.0 4.1e-36 123.7 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|289580016|ref|YP_003478482.1| - 3.9e-32 110.5 0.0 8e-32 109.4 0.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|289580016|ref|YP_003478482.1| - 7.7e-10 39.2 0.0 6.3e-09 36.2 0.0 2.3 2 0 0 2 2 2 1 MutS domain II AAA_14 PF13173.6 gi|289580016|ref|YP_003478482.1| - 0.016 15.2 0.0 0.055 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|289580016|ref|YP_003478482.1| - 0.018 14.6 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289580016|ref|YP_003478482.1| - 0.024 14.4 0.3 0.075 12.7 0.3 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|289580016|ref|YP_003478482.1| - 0.048 14.2 0.0 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|289580016|ref|YP_003478482.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain zf-CHY PF05495.12 gi|289580017|ref|YP_003478483.1| - 1.3e-12 48.1 9.8 1.8e-12 47.6 9.8 1.2 1 0 0 1 1 1 1 CHY zinc finger zf-HC5HC2H_2 PF13832.6 gi|289580017|ref|YP_003478483.1| - 0.012 15.8 2.8 0.015 15.4 2.8 1.2 1 0 0 1 1 1 0 PHD-zinc-finger like domain Mu-like_Com PF10122.9 gi|289580017|ref|YP_003478483.1| - 0.035 13.5 0.4 0.091 12.2 0.4 1.6 1 0 0 1 1 1 0 Mu-like prophage protein Com zf-C2H2 PF00096.26 gi|289580017|ref|YP_003478483.1| - 1.2 9.7 6.7 8.4 7.1 0.2 3.3 3 0 0 3 3 3 0 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.12 gi|289580017|ref|YP_003478483.1| - 4 7.5 11.6 16 5.6 2.3 2.2 1 1 1 2 2 2 0 zinc-ribbons HypA PF01155.19 gi|289580017|ref|YP_003478483.1| - 4.5 7.3 8.6 0.2 11.7 1.8 1.9 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GvpO PF05800.11 gi|289580018|ref|YP_003478484.1| - 4.4e-29 100.3 0.4 4.4e-29 100.3 0.4 2.0 2 0 0 2 2 2 1 Gas vesicle synthesis protein GvpO Presenilin PF01080.17 gi|289580018|ref|YP_003478484.1| - 0.33 9.7 9.1 0.35 9.6 9.1 1.1 1 0 0 1 1 1 0 Presenilin Apt1 PF10351.9 gi|289580018|ref|YP_003478484.1| - 2.5 6.8 8.1 2.8 6.7 8.1 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain eIF-3_zeta PF05091.12 gi|289580018|ref|YP_003478484.1| - 3.3 6.6 10.9 4.2 6.3 10.9 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Zip PF02535.22 gi|289580018|ref|YP_003478484.1| - 4.5 6.4 6.5 5.4 6.1 6.5 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Raftlin PF15250.6 gi|289580018|ref|YP_003478484.1| - 6.5 5.4 13.7 8 5.1 13.7 1.1 1 0 0 1 1 1 0 Raftlin RR_TM4-6 PF06459.12 gi|289580018|ref|YP_003478484.1| - 8.7 6.1 13.9 11 5.7 13.9 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 AAA_5 PF07728.14 gi|289580019|ref|YP_003478485.1| - 4.4e-16 59.1 0.0 6.8e-15 55.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|289580019|ref|YP_003478485.1| - 9e-05 22.1 0.4 0.0002 21.0 0.1 1.7 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|289580019|ref|YP_003478485.1| - 0.0003 20.5 0.0 0.65 9.7 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|289580019|ref|YP_003478485.1| - 0.0013 19.2 0.0 0.0034 17.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|289580019|ref|YP_003478485.1| - 0.0014 18.4 0.0 0.0039 16.9 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|289580019|ref|YP_003478485.1| - 0.0029 17.5 0.0 0.0069 16.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|289580019|ref|YP_003478485.1| - 0.012 15.0 0.1 0.024 14.1 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|289580019|ref|YP_003478485.1| - 0.03 14.4 0.0 0.08 13.1 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain SRA1 PF07304.11 gi|289580019|ref|YP_003478485.1| - 0.045 13.6 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 Steroid receptor RNA activator (SRA1) IPT PF01745.16 gi|289580019|ref|YP_003478485.1| - 0.062 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_7 PF12775.7 gi|289580019|ref|YP_003478485.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_9 PF12781.7 gi|289580019|ref|YP_003478485.1| - 0.22 10.6 0.0 0.42 9.7 0.0 1.4 1 0 0 1 1 1 0 ATP-binding dynein motor region Gas_vesicle PF00741.18 gi|289580020|ref|YP_003478486.1| - 1.1e-15 57.5 6.8 1.5e-15 57.1 6.8 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.11 gi|289580021|ref|YP_003478487.1| - 3.3e-42 145.1 0.3 5.2e-25 88.8 0.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF PaRep2b PF07775.11 gi|289580021|ref|YP_003478487.1| - 0.035 12.6 0.0 0.042 12.3 0.0 1.0 1 0 0 1 1 1 0 PaRep2b protein GvpG PF05120.12 gi|289580022|ref|YP_003478488.1| - 0.074 13.1 4.3 0.089 12.8 4.3 1.1 1 0 0 1 1 1 0 Gas vesicle protein G HSP20 PF00011.21 gi|289580023|ref|YP_003478489.1| - 0.0044 17.1 0.2 0.3 11.3 0.1 2.4 1 1 1 2 2 2 2 Hsp20/alpha crystallin family DisA-linker PF10635.9 gi|289580024|ref|YP_003478490.1| - 0.025 14.3 0.1 0.067 13.0 0.1 1.7 1 1 1 2 2 2 0 DisA bacterial checkpoint controller linker region AHD PF17793.1 gi|289580024|ref|YP_003478490.1| - 0.042 13.6 2.4 0.088 12.6 2.4 1.5 1 0 0 1 1 1 0 ANC1 homology domain (AHD) KaiB PF07689.12 gi|289580024|ref|YP_003478490.1| - 0.14 11.9 0.2 0.79 9.5 0.0 2.1 2 0 0 2 2 2 0 KaiB domain NAM-associated PF14303.6 gi|289580024|ref|YP_003478490.1| - 0.7 10.6 5.7 1.3 9.7 5.7 1.4 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain Gas_vesicle PF00741.18 gi|289580025|ref|YP_003478491.1| - 4.5e-14 52.3 5.4 5.9e-14 51.9 5.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein Sigma70_ner PF04546.13 gi|289580025|ref|YP_003478491.1| - 0.093 12.6 5.4 0.12 12.3 5.4 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region RRN3 PF05327.11 gi|289580025|ref|YP_003478491.1| - 0.43 9.1 3.7 0.4 9.2 3.7 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|289580025|ref|YP_003478491.1| - 0.71 9.1 12.2 0.79 9.0 12.2 1.1 1 0 0 1 1 1 0 NOA36 protein Nop14 PF04147.12 gi|289580025|ref|YP_003478491.1| - 3.2 5.8 10.8 3.2 5.8 10.8 1.0 1 0 0 1 1 1 0 Nop14-like family GvpK PF05121.12 gi|289580026|ref|YP_003478492.1| - 7.7e-25 86.8 5.1 1e-24 86.4 5.1 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Glu-tRNAGln PF02686.15 gi|289580026|ref|YP_003478492.1| - 0.02 15.2 0.1 0.027 14.8 0.1 1.3 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Jnk-SapK_ap_N PF09744.9 gi|289580026|ref|YP_003478492.1| - 0.066 13.4 0.1 0.087 13.1 0.1 1.2 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Csm1_N PF18504.1 gi|289580026|ref|YP_003478492.1| - 0.073 13.4 0.5 0.11 12.9 0.5 1.2 1 0 0 1 1 1 0 Csm1 N-terminal domain Val_tRNA-synt_C PF10458.9 gi|289580026|ref|YP_003478492.1| - 0.077 13.3 0.3 0.14 12.4 0.3 1.4 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm FlxA PF14282.6 gi|289580026|ref|YP_003478492.1| - 0.079 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein Rx_N PF18052.1 gi|289580026|ref|YP_003478492.1| - 0.1 12.9 0.3 0.13 12.6 0.3 1.2 1 0 0 1 1 1 0 Rx N-terminal domain cwf21 PF08312.12 gi|289580026|ref|YP_003478492.1| - 0.29 11.3 3.0 5 7.4 0.4 2.4 1 1 1 2 2 2 0 cwf21 domain GvpL_GvpF PF06386.11 gi|289580027|ref|YP_003478493.1| - 3.3e-79 266.3 0.9 4.2e-79 265.9 0.9 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF DUF3915 PF13054.6 gi|289580027|ref|YP_003478493.1| - 4.3 7.3 6.8 8.6 6.4 6.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) Gas_vesicle PF00741.18 gi|289580028|ref|YP_003478494.1| - 3.7e-12 46.2 9.8 4.7e-12 45.8 9.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein zf-CCHC_2 PF13696.6 gi|289580029|ref|YP_003478495.1| - 0.094 12.6 0.9 0.21 11.4 0.1 1.8 2 0 0 2 2 2 0 Zinc knuckle GFO_IDH_MocA PF01408.22 gi|289580030|ref|YP_003478496.1| - 1.9e-25 90.0 0.0 4.2e-15 56.6 0.0 2.6 3 0 0 3 3 2 2 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|289580030|ref|YP_003478496.1| - 1.1e-05 25.4 0.1 2.6e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|289580030|ref|YP_003478496.1| - 0.00025 21.7 0.0 1.2 9.8 0.0 2.3 2 0 0 2 2 2 2 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|289580030|ref|YP_003478496.1| - 0.01 16.4 0.0 0.52 10.9 0.0 2.9 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|289580030|ref|YP_003478496.1| - 0.022 15.2 0.0 3.5 8.1 0.0 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain CDK2AP PF09806.9 gi|289580030|ref|YP_003478496.1| - 0.094 12.8 0.9 0.14 12.2 0.9 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein SSP160 PF06933.11 gi|289580030|ref|YP_003478496.1| - 0.11 10.7 3.4 0.14 10.3 3.4 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 ApbA PF02558.16 gi|289580030|ref|YP_003478496.1| - 0.11 12.1 0.0 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AF-4 PF05110.13 gi|289580030|ref|YP_003478496.1| - 0.3 9.1 19.6 0.43 8.6 19.6 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein SEEEED PF14797.6 gi|289580030|ref|YP_003478496.1| - 0.49 10.5 20.8 0.92 9.7 20.8 1.4 1 0 0 1 1 1 0 Serine-rich region of AP3B1, clathrin-adaptor complex BUD22 PF09073.10 gi|289580030|ref|YP_003478496.1| - 8.4 5.6 11.0 12 5.1 11.0 1.1 1 0 0 1 1 1 0 BUD22 Secretin_N_2 PF07655.13 gi|289580030|ref|YP_003478496.1| - 9.3 6.9 17.3 18 6.0 17.3 1.4 1 0 0 1 1 1 0 Secretin N-terminal domain ADH_N PF08240.12 gi|289580031|ref|YP_003478497.1| - 3.2e-27 94.6 0.3 6.2e-27 93.6 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|289580031|ref|YP_003478497.1| - 7.1e-25 87.5 0.3 1.1e-24 86.9 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|289580031|ref|YP_003478497.1| - 7.2e-07 28.7 0.5 1.1e-06 28.2 0.5 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|289580031|ref|YP_003478497.1| - 6e-06 27.3 0.0 9.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|289580031|ref|YP_003478497.1| - 0.058 14.1 0.3 0.13 13.0 0.3 1.6 1 0 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|289580031|ref|YP_003478497.1| - 0.076 12.4 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Flu_M1_C PF08289.11 gi|289580031|ref|YP_003478497.1| - 0.11 12.7 0.3 0.22 11.7 0.3 1.5 1 0 0 1 1 1 0 Influenza Matrix protein (M1) C-terminal domain PMSR PF01625.21 gi|289580032|ref|YP_003478498.1| - 4e-34 118.0 0.0 6e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF2039 PF10217.9 gi|289580033|ref|YP_003478499.1| - 0.017 15.4 0.1 0.018 15.3 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) GATA PF00320.27 gi|289580033|ref|YP_003478499.1| - 0.069 12.8 2.2 0.15 11.7 1.5 1.9 1 1 0 1 1 1 0 GATA zinc finger NinF PF05810.12 gi|289580033|ref|YP_003478499.1| - 0.68 9.9 4.3 27 4.7 4.3 2.1 1 1 0 1 1 1 0 NinF protein MaoC_dehydratas PF01575.19 gi|289580035|ref|YP_003478501.1| - 4.6e-20 71.4 0.0 6.2e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|289580035|ref|YP_003478501.1| - 1.1e-09 38.6 0.0 1.8e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase SnoaL PF07366.12 gi|289580037|ref|YP_003478503.1| - 2.7e-30 104.7 0.1 3.1e-30 104.6 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|289580037|ref|YP_003478503.1| - 1.2e-22 80.4 0.2 1.5e-22 80.2 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain LEH PF07858.12 gi|289580037|ref|YP_003478503.1| - 0.0079 16.3 0.1 0.011 15.8 0.1 1.3 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain DUF4440 PF14534.6 gi|289580037|ref|YP_003478503.1| - 0.11 12.9 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) GYD PF08734.11 gi|289580038|ref|YP_003478504.1| - 1.6e-24 85.7 0.0 1.7e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 GYD domain Phage_integrase PF00589.22 gi|289580039|ref|YP_003478505.1| - 2.1e-09 37.4 0.0 4e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|289580039|ref|YP_003478505.1| - 7.5e-06 26.2 0.2 4.9e-05 23.6 0.1 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|289580039|ref|YP_003478505.1| - 2.9e-05 24.3 0.0 4.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Phage integrase SAM-like domain DUF658 PF04936.12 gi|289580039|ref|YP_003478505.1| - 0.058 13.1 0.0 0.097 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF658) DUF424 PF04242.13 gi|289580040|ref|YP_003478506.1| - 0.034 14.4 0.9 0.07 13.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF424) SMODS PF18144.1 gi|289580041|ref|YP_003478507.1| - 9.7e-24 84.4 0.3 1.1e-19 71.2 0.0 2.2 2 0 0 2 2 2 2 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain ThiF PF00899.21 gi|289580042|ref|YP_003478508.1| - 1.9e-24 86.3 0.0 3.1e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ThiF family Prok-JAB PF14464.6 gi|289580042|ref|YP_003478508.1| - 5.3e-08 32.7 0.0 2.2e-07 30.7 0.0 2.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Shikimate_DH PF01488.20 gi|289580042|ref|YP_003478508.1| - 0.0042 17.2 0.2 0.041 13.9 0.0 2.3 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Prok-E2_A PF14457.6 gi|289580042|ref|YP_003478508.1| - 0.01 15.5 0.3 0.037 13.6 0.3 1.9 1 1 0 1 1 1 0 Prokaryotic E2 family A ApbA PF02558.16 gi|289580042|ref|YP_003478508.1| - 0.044 13.4 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|289580042|ref|YP_003478508.1| - 0.071 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SAVED PF18145.1 gi|289580043|ref|YP_003478509.1| - 3.4e-33 115.1 0.0 6.6e-33 114.1 0.0 1.5 1 0 0 1 1 1 1 SMODS-associated and fused to various effectors sensor domain TIR_2 PF13676.6 gi|289580043|ref|YP_003478509.1| - 2.9e-05 24.7 0.0 7.5e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 TIR domain aGPT-Pplase1 PF18723.1 gi|289580044|ref|YP_003478510.1| - 3.3e-72 243.3 0.0 3.9e-72 243.1 0.0 1.0 1 0 0 1 1 1 1 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 zinc_ribbon_11 PF11682.8 gi|289580045|ref|YP_003478511.1| - 0.0005 20.1 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Probable zinc-ribbon HypA PF01155.19 gi|289580045|ref|YP_003478511.1| - 0.1 12.6 0.3 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4231 PF14015.6 gi|289580047|ref|YP_003478513.1| - 2e-25 89.3 0.4 2.6e-25 88.9 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4231) SLATT_3 PF18184.1 gi|289580047|ref|YP_003478513.1| - 7.6e-05 22.9 0.8 0.0001 22.4 0.8 1.3 1 1 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 3 SLATT_1 PF18181.1 gi|289580047|ref|YP_003478513.1| - 0.00065 19.6 0.4 0.00085 19.2 0.4 1.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 1 SLATT_4 PF18186.1 gi|289580047|ref|YP_003478513.1| - 0.002 17.8 0.1 0.0025 17.5 0.1 1.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain family 4 SLATT_5 PF18160.1 gi|289580047|ref|YP_003478513.1| - 0.0059 15.9 0.1 0.007 15.7 0.1 1.3 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain family 5 Halogen_Hydrol PF10112.9 gi|289580047|ref|YP_003478513.1| - 0.016 15.2 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF1863 PF08937.11 gi|289580048|ref|YP_003478514.1| - 1.1e-23 83.9 0.1 1.5e-23 83.5 0.1 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.6 gi|289580048|ref|YP_003478514.1| - 3.1e-08 34.2 0.1 4.9e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 TIR domain Thr_dehydrat_C PF00585.18 gi|289580048|ref|YP_003478514.1| - 0.042 13.6 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 C-terminal regulatory domain of Threonine dehydratase TusA PF01206.17 gi|289580048|ref|YP_003478514.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Sulfurtransferase TusA MazE_antitoxin PF04014.18 gi|289580049|ref|YP_003478515.1| - 0.0016 18.3 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Resolvase PF00239.21 gi|289580050|ref|YP_003478516.1| - 5.7e-14 52.4 0.9 6.8e-14 52.2 0.3 1.5 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_38 PF13936.6 gi|289580050|ref|YP_003478516.1| - 0.019 14.7 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2285 PF10074.9 gi|289580050|ref|YP_003478516.1| - 0.1 13.2 0.0 0.29 11.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) HTH_23 PF13384.6 gi|289580050|ref|YP_003478516.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Resolvase PF00239.21 gi|289580051|ref|YP_003478517.1| - 5e-06 26.7 0.8 3.5e-05 23.9 0.2 2.6 1 1 2 3 3 3 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|289580051|ref|YP_003478517.1| - 0.0026 17.5 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_8 PF02954.19 gi|289580051|ref|YP_003478517.1| - 0.0028 17.4 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family DUF134 PF02001.16 gi|289580051|ref|YP_003478517.1| - 0.054 14.1 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|289580051|ref|YP_003478517.1| - 0.068 12.7 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 NUMOD1 PF07453.13 gi|289580051|ref|YP_003478517.1| - 0.11 12.8 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_1 PF00126.27 gi|289580051|ref|YP_003478517.1| - 0.19 11.7 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Cdc6_C PF09079.11 gi|289580054|ref|YP_003478520.1| - 2.3e-07 30.7 0.0 7.4e-07 29.1 0.0 1.9 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|289580054|ref|YP_003478520.1| - 7.1e-07 29.8 0.0 2.3e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289580054|ref|YP_003478520.1| - 3.3e-05 24.2 0.0 0.0001 22.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|289580054|ref|YP_003478520.1| - 0.028 14.7 0.1 0.059 13.7 0.1 1.5 1 0 0 1 1 1 0 AAA C-terminal domain DUF815 PF05673.13 gi|289580054|ref|YP_003478520.1| - 0.06 12.5 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Resolvase PF00239.21 gi|289580058|ref|YP_003478524.1| - 0.0012 19.0 0.2 0.0022 18.1 0.2 1.5 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|289580058|ref|YP_003478524.1| - 0.0037 17.0 0.0 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain VbhA PF18495.1 gi|289580060|ref|YP_003478526.1| - 0.023 14.5 1.6 0.023 14.5 1.6 1.9 2 0 0 2 2 2 0 Antitoxin VbhA AAA_5 PF07728.14 gi|289580065|ref|YP_003478531.1| - 6.5e-17 61.8 0.0 2e-16 60.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|289580065|ref|YP_003478531.1| - 3.3e-06 27.5 0.0 1.1e-05 25.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|289580065|ref|YP_003478531.1| - 3.8e-06 26.5 0.1 0.00075 19.1 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|289580065|ref|YP_003478531.1| - 4.3e-06 26.6 0.0 2.6e-05 24.1 0.0 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|289580065|ref|YP_003478531.1| - 0.00018 21.5 1.2 0.0003 20.8 0.0 1.9 2 0 0 2 2 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|289580065|ref|YP_003478531.1| - 0.0005 20.4 0.1 0.0024 18.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|289580065|ref|YP_003478531.1| - 0.00058 19.5 0.0 0.0014 18.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|289580065|ref|YP_003478531.1| - 0.00092 19.7 0.0 0.0029 18.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter NACHT PF05729.12 gi|289580065|ref|YP_003478531.1| - 0.00092 19.2 0.2 0.033 14.1 0.1 2.3 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|289580065|ref|YP_003478531.1| - 0.0011 19.6 0.3 0.0032 18.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|289580065|ref|YP_003478531.1| - 0.0013 18.9 0.0 0.0029 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|289580065|ref|YP_003478531.1| - 0.0017 18.7 0.0 0.0038 17.6 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_6 PF12774.7 gi|289580065|ref|YP_003478531.1| - 0.0018 17.3 1.2 0.89 8.5 0.3 2.3 2 0 0 2 2 2 2 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 gi|289580065|ref|YP_003478531.1| - 0.0019 18.6 0.1 0.0078 16.6 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|289580065|ref|YP_003478531.1| - 0.0022 17.7 3.3 0.0025 17.6 0.3 2.3 3 0 0 3 3 2 1 AAA domain RuvB_N PF05496.12 gi|289580065|ref|YP_003478531.1| - 0.005 16.6 0.1 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|289580065|ref|YP_003478531.1| - 0.0063 16.2 0.0 0.025 14.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.6 gi|289580065|ref|YP_003478531.1| - 0.0067 16.5 0.2 0.044 13.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289580065|ref|YP_003478531.1| - 0.0088 16.3 0.2 0.0088 16.3 0.2 2.1 3 0 0 3 3 1 1 AAA domain AAA_30 PF13604.6 gi|289580065|ref|YP_003478531.1| - 0.0089 15.8 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|289580065|ref|YP_003478531.1| - 0.0099 15.3 0.0 0.029 13.7 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IPT PF01745.16 gi|289580065|ref|YP_003478531.1| - 0.01 15.2 0.1 0.021 14.2 0.1 1.4 1 0 0 1 1 1 0 Isopentenyl transferase ATPase_2 PF01637.18 gi|289580065|ref|YP_003478531.1| - 0.017 15.1 0.2 0.044 13.7 0.0 1.7 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|289580065|ref|YP_003478531.1| - 0.069 12.9 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|289580065|ref|YP_003478531.1| - 0.097 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_21 PF13304.6 gi|289580065|ref|YP_003478531.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Cytidylate_kin PF02224.18 gi|289580065|ref|YP_003478531.1| - 0.13 12.0 1.1 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase Sigma54_activ_2 PF14532.6 gi|289580065|ref|YP_003478531.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.16 gi|289580065|ref|YP_003478531.1| - 0.19 11.1 0.6 0.44 10.0 0.2 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_23 PF13476.6 gi|289580065|ref|YP_003478531.1| - 0.85 10.1 0.0 0.85 10.1 0.0 2.4 3 1 0 3 3 2 0 AAA domain McrBC PF10117.9 gi|289580066|ref|YP_003478532.1| - 1.2e-11 44.4 0.0 1.9e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component L51_S25_CI-B8 PF05047.16 gi|289580067|ref|YP_003478533.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain HycI PF01750.18 gi|289580067|ref|YP_003478533.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase maturation protease DUF1156 PF06634.12 gi|289580068|ref|YP_003478534.1| - 2.3e-08 34.0 0.0 6.1e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) N6_N4_Mtase PF01555.18 gi|289580068|ref|YP_003478534.1| - 2.8e-07 30.5 0.0 0.014 15.1 0.0 2.5 2 1 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|289580068|ref|YP_003478534.1| - 8e-06 25.7 0.0 0.15 11.7 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|289580068|ref|YP_003478534.1| - 0.0025 17.5 0.4 0.0086 15.8 0.0 2.0 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase HypA PF01155.19 gi|289580068|ref|YP_003478534.1| - 0.0045 17.0 10.4 1.6 8.8 0.1 3.5 2 1 1 3 3 3 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Methyltransf_25 PF13649.6 gi|289580068|ref|YP_003478534.1| - 0.0064 17.2 0.0 11 6.8 0.0 3.1 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|289580068|ref|YP_003478534.1| - 0.039 13.6 0.0 6.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein 95 zinc-ribbons_6 PF07191.12 gi|289580068|ref|YP_003478534.1| - 0.15 12.0 14.7 0.89 9.6 5.4 3.2 1 1 1 2 2 2 0 zinc-ribbons Methyltransf_11 PF08241.12 gi|289580068|ref|YP_003478534.1| - 0.17 12.5 0.0 6 7.6 0.0 2.9 3 0 0 3 3 3 0 Methyltransferase domain DZR PF12773.7 gi|289580068|ref|YP_003478534.1| - 0.26 11.4 13.9 0.42 10.7 3.5 3.2 1 1 1 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289580068|ref|YP_003478534.1| - 0.3 11.3 21.0 0.13 12.4 3.6 4.6 2 1 1 4 4 4 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|289580068|ref|YP_003478534.1| - 5.8 7.0 16.4 6.2 6.9 5.2 4.0 3 1 1 4 4 4 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|289580069|ref|YP_003478535.1| - 0.00021 21.1 11.1 0.0028 17.5 0.3 2.7 3 0 0 3 3 3 2 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|289580069|ref|YP_003478535.1| - 0.002 18.5 2.1 0.54 10.7 0.1 2.3 2 0 0 2 2 2 2 DnaJ central domain zf-CSL PF05207.13 gi|289580069|ref|YP_003478535.1| - 0.022 14.5 3.1 2.5 7.9 1.4 2.7 2 1 0 2 2 2 0 CSL zinc finger zf-C3HC4_3 PF13920.6 gi|289580069|ref|YP_003478535.1| - 0.028 14.3 7.2 0.055 13.3 0.8 3.0 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) IcmF-related PF06761.12 gi|289580069|ref|YP_003478535.1| - 0.03 13.8 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing MSC PF09402.10 gi|289580069|ref|YP_003478535.1| - 0.036 13.5 0.3 0.049 13.1 0.3 1.3 1 1 0 1 1 1 0 Man1-Src1p-C-terminal domain TF_Zn_Ribbon PF08271.12 gi|289580069|ref|YP_003478535.1| - 0.036 13.6 1.0 0.036 13.6 1.0 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|289580069|ref|YP_003478535.1| - 0.038 14.0 8.8 0.15 12.1 1.1 2.5 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|289580069|ref|YP_003478535.1| - 0.077 13.1 5.3 0.1 12.6 0.1 2.5 3 0 0 3 3 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|289580069|ref|YP_003478535.1| - 0.099 12.4 0.8 0.099 12.4 0.8 3.0 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|289580069|ref|YP_003478535.1| - 0.12 12.6 0.2 0.12 12.6 0.2 4.0 3 2 2 5 5 4 0 zinc-ribbon Stc1 PF12898.7 gi|289580069|ref|YP_003478535.1| - 0.2 12.2 5.3 0.71 10.5 0.2 2.5 2 1 0 2 2 2 0 Stc1 domain zf-C2H2_3 PF13878.6 gi|289580069|ref|YP_003478535.1| - 0.21 11.4 0.1 0.21 11.4 0.1 3.3 2 2 2 4 4 4 0 zinc-finger of acetyl-transferase ESCO FlhC PF05280.11 gi|289580069|ref|YP_003478535.1| - 0.4 10.4 2.2 1.7 8.4 0.1 2.1 2 0 0 2 2 2 0 Flagellar transcriptional activator (FlhC) zf-RING_2 PF13639.6 gi|289580069|ref|YP_003478535.1| - 0.98 9.8 11.4 0.57 10.6 0.7 2.6 2 1 0 2 2 2 0 Ring finger domain Zn-ribbon_8 PF09723.10 gi|289580069|ref|YP_003478535.1| - 1.2 9.3 12.8 2.4 8.3 2.3 2.9 2 1 1 3 3 3 0 Zinc ribbon domain PriA_CRR PF18319.1 gi|289580069|ref|YP_003478535.1| - 1.9 8.6 7.2 2.1 8.4 0.3 2.7 3 0 0 3 3 3 0 PriA DNA helicase Cys-rich region (CRR) domain zf-H2C2_2 PF13465.6 gi|289580069|ref|YP_003478535.1| - 2.6 8.6 11.7 7.5 7.2 0.1 4.0 4 0 0 4 4 4 0 Zinc-finger double domain Thioredoxin_3 PF13192.6 gi|289580069|ref|YP_003478535.1| - 2.7 8.1 4.7 3.1 7.9 0.2 2.9 2 1 1 3 3 3 0 Thioredoxin domain Lar_restr_allev PF14354.6 gi|289580069|ref|YP_003478535.1| - 2.8 8.4 13.4 0.24 11.8 3.5 3.1 2 2 1 3 3 3 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|289580069|ref|YP_003478535.1| - 5.7 6.8 6.5 1.6 8.5 0.3 2.6 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein FYDLN_acid PF09538.10 gi|289580069|ref|YP_003478535.1| - 8.2 7.2 7.0 1.9e+02 2.8 6.7 2.5 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF499 PF04465.12 gi|289580071|ref|YP_003478537.1| - 2.3e-10 38.9 1.1 0.00013 19.9 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF499) SNF2_N PF00176.23 gi|289580072|ref|YP_003478538.1| - 3.8e-35 121.2 0.1 8.4e-35 120.1 0.1 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|289580072|ref|YP_003478538.1| - 7.9e-21 74.5 0.0 2.8e-20 72.7 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|289580072|ref|YP_003478538.1| - 3.1e-10 40.3 0.1 1.8e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.6 gi|289580072|ref|YP_003478538.1| - 0.0037 17.4 0.3 0.015 15.5 0.2 2.1 1 1 0 1 1 1 1 Helicase C-terminal domain DSS1_SEM1 PF05160.13 gi|289580072|ref|YP_003478538.1| - 0.0065 16.5 0.3 0.022 14.8 0.3 1.9 1 0 0 1 1 1 1 DSS1/SEM1 family AF0941-like PF14591.6 gi|289580072|ref|YP_003478538.1| - 0.019 15.6 1.5 0.085 13.4 1.5 2.1 1 0 0 1 1 1 0 AF0941-like H-kinase_dim PF02895.14 gi|289580072|ref|YP_003478538.1| - 0.31 11.5 3.9 4.9 7.6 0.2 3.5 3 0 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain FapA PF03961.13 gi|289580073|ref|YP_003478539.1| - 0.039 12.6 6.1 0.056 12.0 6.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A LPP PF04728.13 gi|289580073|ref|YP_003478539.1| - 0.062 13.7 4.9 0.28 11.6 0.2 2.8 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DUF3584 PF12128.8 gi|289580073|ref|YP_003478539.1| - 0.12 9.8 15.3 0.16 9.4 15.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Cnn_1N PF07989.11 gi|289580073|ref|YP_003478539.1| - 0.12 12.5 9.1 0.047 13.9 5.6 2.2 2 0 0 2 2 1 0 Centrosomin N-terminal motif 1 Cytochrom_B562 PF07361.11 gi|289580073|ref|YP_003478539.1| - 0.14 12.9 5.1 0.43 11.3 5.1 1.9 1 0 0 1 1 1 0 Cytochrome b562 Prominin PF05478.11 gi|289580073|ref|YP_003478539.1| - 0.19 9.7 3.6 0.23 9.4 3.6 1.1 1 0 0 1 1 1 0 Prominin HAUS6_N PF14661.6 gi|289580073|ref|YP_003478539.1| - 0.21 11.2 11.7 0.47 10.0 11.7 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus YceI PF04264.13 gi|289580073|ref|YP_003478539.1| - 0.21 12.2 0.9 8.7 6.9 0.1 2.8 1 1 2 3 3 3 0 YceI-like domain LIM PF00412.22 gi|289580073|ref|YP_003478539.1| - 0.21 11.8 0.7 0.4 10.9 0.7 1.4 1 0 0 1 1 1 0 LIM domain APG6_N PF17675.1 gi|289580073|ref|YP_003478539.1| - 0.23 12.0 20.6 7.9 7.0 19.7 2.7 1 1 0 1 1 1 0 Apg6 coiled-coil region Atg14 PF10186.9 gi|289580073|ref|YP_003478539.1| - 0.26 10.3 7.0 0.4 9.7 7.0 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|289580073|ref|YP_003478539.1| - 0.42 10.7 8.6 0.63 10.2 4.9 2.5 1 1 1 2 2 2 0 bZIP transcription factor Fmp27_WPPW PF10359.9 gi|289580073|ref|YP_003478539.1| - 0.48 9.2 9.6 0.52 9.1 8.8 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TPR_MLP1_2 PF07926.12 gi|289580073|ref|YP_003478539.1| - 0.61 10.2 19.9 1.2 9.2 12.7 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Shugoshin_N PF07558.11 gi|289580073|ref|YP_003478539.1| - 0.75 9.7 3.5 1 9.3 1.3 2.3 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region DUF16 PF01519.16 gi|289580073|ref|YP_003478539.1| - 0.78 10.3 9.9 2 8.9 8.9 2.4 2 1 0 2 2 1 0 Protein of unknown function DUF16 V_ATPase_I PF01496.19 gi|289580073|ref|YP_003478539.1| - 1.1 7.0 5.7 1.4 6.7 5.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.8 gi|289580073|ref|YP_003478539.1| - 1.2 9.2 11.0 1.3 9.1 9.2 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Cob_adeno_trans PF01923.18 gi|289580073|ref|YP_003478539.1| - 1.3 9.1 6.0 0.6 10.2 2.5 2.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase CCDC-167 PF15188.6 gi|289580073|ref|YP_003478539.1| - 1.6 9.1 9.7 6.5 7.2 9.6 2.1 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 Muted PF14942.6 gi|289580073|ref|YP_003478539.1| - 1.6 9.0 15.7 2.2 8.6 13.6 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein FlaC_arch PF05377.11 gi|289580073|ref|YP_003478539.1| - 2 8.9 6.4 3 8.3 2.0 3.3 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|289580073|ref|YP_003478539.1| - 2.2 9.0 12.5 0.19 12.3 1.4 3.3 2 1 1 3 3 2 0 SlyX DUF4407 PF14362.6 gi|289580073|ref|YP_003478539.1| - 2.9 7.1 13.8 6.1 6.1 13.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF5446 PF17522.2 gi|289580073|ref|YP_003478539.1| - 4 7.7 11.6 4.9 7.4 6.0 2.8 1 1 1 2 2 2 0 Family of unknown function (DUF5446) bZIP_2 PF07716.15 gi|289580073|ref|YP_003478539.1| - 4.3 7.5 10.2 3 8.0 3.5 2.8 1 1 1 2 2 2 0 Basic region leucine zipper V-ATPase_G PF03179.15 gi|289580073|ref|YP_003478539.1| - 5.1 7.7 14.0 3.7 8.1 9.4 2.5 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit ZapB PF06005.12 gi|289580073|ref|YP_003478539.1| - 6 7.4 12.7 12 6.4 10.4 2.6 1 1 1 2 2 2 0 Cell division protein ZapB DUF2408 PF10303.9 gi|289580073|ref|YP_003478539.1| - 6.5 7.3 12.8 27 5.3 12.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Swi5 PF07061.11 gi|289580073|ref|YP_003478539.1| - 7.5 6.7 12.1 0.96 9.6 0.9 3.2 2 1 1 3 3 3 0 Swi5 Cob_adeno_trans PF01923.18 gi|289580076|ref|YP_003478542.1| - 1.4e-55 187.9 0.0 1.6e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase zf-C2H2 PF00096.26 gi|289580077|ref|YP_003478543.1| - 5e-05 23.5 1.4 0.085 13.3 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|289580077|ref|YP_003478543.1| - 0.00029 21.1 2.3 0.0022 18.3 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zinc_ribbon_9 PF14369.6 gi|289580077|ref|YP_003478543.1| - 0.0023 18.2 0.6 0.12 12.7 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon DUF1610 PF07754.11 gi|289580077|ref|YP_003478543.1| - 0.003 17.5 2.1 0.21 11.6 0.4 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Rubredoxin PF00301.20 gi|289580077|ref|YP_003478543.1| - 0.0033 17.4 2.1 0.68 10.0 0.4 2.2 2 0 0 2 2 2 2 Rubredoxin Ribosomal_S27e PF01667.17 gi|289580077|ref|YP_003478543.1| - 0.0037 17.0 0.7 0.071 12.8 0.0 2.1 1 1 1 2 2 2 1 Ribosomal protein S27 Zn_ribbon_SprT PF17283.2 gi|289580077|ref|YP_003478543.1| - 0.0051 16.7 1.5 0.91 9.5 0.1 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain DUF3797 PF12677.7 gi|289580077|ref|YP_003478543.1| - 0.0062 16.4 1.7 0.51 10.3 0.0 2.5 1 1 2 3 3 3 1 Domain of unknown function (DUF3797) Lar_restr_allev PF14354.6 gi|289580077|ref|YP_003478543.1| - 0.0089 16.4 0.4 0.01 16.2 0.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF983 PF06170.12 gi|289580077|ref|YP_003478543.1| - 0.025 15.0 0.6 0.73 10.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Zn_Tnp_IS1595 PF12760.7 gi|289580077|ref|YP_003478543.1| - 0.026 14.5 2.4 0.041 13.8 2.4 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF3268 PF11672.8 gi|289580077|ref|YP_003478543.1| - 0.05 13.9 0.2 0.054 13.8 0.2 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain zinc_ribbon_5 PF13719.6 gi|289580077|ref|YP_003478543.1| - 0.057 13.2 2.6 2.7 7.8 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|289580077|ref|YP_003478543.1| - 0.1 12.6 1.5 8.3 6.5 1.4 2.1 1 1 0 1 1 1 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|289580077|ref|YP_003478543.1| - 0.11 12.5 2.8 5.6 7.1 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|289580077|ref|YP_003478543.1| - 0.12 12.4 0.8 4.4 7.4 0.1 2.0 1 1 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|289580077|ref|YP_003478543.1| - 0.13 12.0 3.9 0.95 9.2 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|289580077|ref|YP_003478543.1| - 0.14 12.1 2.8 0.66 9.9 0.1 2.5 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.6 gi|289580077|ref|YP_003478543.1| - 0.3 11.2 4.7 8.8 6.5 0.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|289580077|ref|YP_003478543.1| - 0.32 11.1 4.2 2.7 8.2 0.6 2.2 1 1 2 3 3 3 0 Zinc ribbon domain DUF4379 PF14311.6 gi|289580077|ref|YP_003478543.1| - 0.63 10.5 4.1 0.34 11.3 0.3 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-IS66 PF13005.7 gi|289580077|ref|YP_003478543.1| - 1.5 9.3 5.5 7.3 7.1 0.5 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Inositol_P PF00459.25 gi|289580078|ref|YP_003478544.1| - 1.9e-59 201.4 0.0 4.2e-59 200.3 0.0 1.5 2 0 0 2 2 2 1 Inositol monophosphatase family NAD_kinase PF01513.21 gi|289580078|ref|YP_003478544.1| - 2e-31 109.3 1.0 3e-31 108.7 1.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase FBPase PF00316.20 gi|289580078|ref|YP_003478544.1| - 0.031 13.8 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain DAGK_cat PF00781.24 gi|289580078|ref|YP_003478544.1| - 0.031 13.9 0.0 0.09 12.4 0.0 1.7 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF3944 PF13099.6 gi|289580078|ref|YP_003478544.1| - 0.06 13.2 0.0 0.53 10.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) Acetyltransf_3 PF13302.7 gi|289580079|ref|YP_003478545.1| - 6.6e-14 52.8 0.2 1.1e-13 52.0 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Aminotran_5 PF00266.19 gi|289580080|ref|YP_003478546.1| - 5.5e-11 42.0 0.0 7.8e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|289580080|ref|YP_003478546.1| - 7.8e-06 25.0 0.0 4.4e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|289580080|ref|YP_003478546.1| - 5.8e-05 22.5 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|289580080|ref|YP_003478546.1| - 0.0032 16.8 0.0 0.006 15.9 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|289580080|ref|YP_003478546.1| - 0.037 13.2 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|289580080|ref|YP_003478546.1| - 0.2 10.1 0.0 0.29 9.6 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|289580081|ref|YP_003478547.1| - 3.2e-102 342.6 0.0 3.6e-102 342.4 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|289580081|ref|YP_003478547.1| - 0.005 15.4 0.0 0.0071 14.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AI-2E_transport PF01594.16 gi|289580082|ref|YP_003478548.1| - 2.5e-41 141.9 37.3 2.8e-41 141.7 37.3 1.0 1 0 0 1 1 1 1 AI-2E family transporter E1-E2_ATPase PF00122.20 gi|289580083|ref|YP_003478549.1| - 7.6e-44 149.4 4.5 7.6e-44 149.4 4.5 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|289580083|ref|YP_003478549.1| - 6.6e-31 108.2 5.6 1.3e-30 107.2 5.6 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|289580083|ref|YP_003478549.1| - 1.1e-12 48.1 0.1 3.7e-12 46.5 0.1 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|289580083|ref|YP_003478549.1| - 0.0011 18.8 0.5 0.0037 17.1 0.6 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|289580083|ref|YP_003478549.1| - 0.038 14.7 0.4 0.14 13.0 0.1 2.0 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase DUF963 PF06131.11 gi|289580083|ref|YP_003478549.1| - 0.094 12.1 0.6 0.28 10.6 0.6 1.8 1 0 0 1 1 1 0 Schizosaccharomyces pombe repeat of unknown function (DUF963) DsbD_2 PF13386.6 gi|289580084|ref|YP_003478550.1| - 2e-47 161.7 14.4 7.2e-47 159.9 14.4 1.7 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region PIRT PF15099.6 gi|289580084|ref|YP_003478550.1| - 0.15 11.7 0.9 0.57 9.8 0.4 2.0 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family HMG_CoA_synt_N PF01154.17 gi|289580085|ref|YP_003478551.1| - 4.3e-26 91.8 0.0 6.1e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|289580085|ref|YP_003478551.1| - 4.7e-21 75.6 0.0 7.9e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal DUF2150 PF09920.9 gi|289580086|ref|YP_003478552.1| - 2.9e-69 232.8 9.1 3.3e-69 232.7 9.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Chorion_3 PF05387.11 gi|289580086|ref|YP_003478552.1| - 0.12 12.0 0.1 0.15 11.6 0.1 1.1 1 0 0 1 1 1 0 Chorion family 3 TatD_DNase PF01026.21 gi|289580087|ref|YP_003478553.1| - 8.1e-16 58.2 0.0 1e-14 54.5 0.0 1.9 1 1 0 1 1 1 1 TatD related DNase AAA PF00004.29 gi|289580089|ref|YP_003478555.1| - 6.4e-100 330.8 0.0 4.8e-49 166.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289580089|ref|YP_003478555.1| - 6e-28 96.4 2.1 9.2e-15 54.2 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|289580089|ref|YP_003478555.1| - 1.4e-25 89.3 0.1 1.8e-24 85.7 0.1 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|289580089|ref|YP_003478555.1| - 5.3e-17 62.5 0.2 2.5e-08 34.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|289580089|ref|YP_003478555.1| - 9.6e-17 61.2 0.0 2.6e-08 33.8 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|289580089|ref|YP_003478555.1| - 9.8e-15 54.1 0.1 2.8e-14 52.6 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|289580089|ref|YP_003478555.1| - 2.6e-14 54.0 0.0 1.7e-06 28.5 0.0 3.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|289580089|ref|YP_003478555.1| - 5.2e-11 42.9 0.0 0.0002 21.5 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|289580089|ref|YP_003478555.1| - 1.7e-10 41.0 1.3 0.00096 19.2 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|289580089|ref|YP_003478555.1| - 1.8e-10 41.3 0.6 0.0033 17.7 0.0 3.8 3 2 2 5 5 4 2 AAA domain TIP49 PF06068.13 gi|289580089|ref|YP_003478555.1| - 2.9e-10 39.9 0.0 0.00031 20.1 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|289580089|ref|YP_003478555.1| - 4.9e-09 36.3 0.0 0.00071 19.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|289580089|ref|YP_003478555.1| - 5.5e-09 36.0 0.0 0.0046 16.7 0.0 3.2 3 0 0 3 3 3 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|289580089|ref|YP_003478555.1| - 8e-08 32.6 0.0 0.016 15.6 0.0 2.6 2 1 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|289580089|ref|YP_003478555.1| - 1.1e-07 31.6 0.0 0.019 14.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|289580089|ref|YP_003478555.1| - 1.4e-07 31.3 0.6 0.12 11.9 0.1 4.2 4 0 0 4 4 4 1 AAA domain Mg_chelatase PF01078.21 gi|289580089|ref|YP_003478555.1| - 4.4e-07 29.5 0.4 0.013 14.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|289580089|ref|YP_003478555.1| - 5.9e-07 29.4 0.0 0.0073 16.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|289580089|ref|YP_003478555.1| - 7.7e-07 28.5 0.0 0.0039 16.4 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|289580089|ref|YP_003478555.1| - 8.8e-07 29.3 0.2 0.024 14.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|289580089|ref|YP_003478555.1| - 1.2e-06 29.1 0.0 0.081 13.5 0.0 3.3 3 1 0 3 3 2 2 AAA domain Sigma54_activat PF00158.26 gi|289580089|ref|YP_003478555.1| - 2.4e-06 27.4 0.0 0.12 12.1 0.0 3.6 2 1 0 3 3 3 2 Sigma-54 interaction domain TsaE PF02367.17 gi|289580089|ref|YP_003478555.1| - 2.5e-06 27.5 0.0 0.097 12.7 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|289580089|ref|YP_003478555.1| - 5.2e-06 26.5 0.2 0.89 9.5 0.0 4.2 3 1 1 4 4 4 2 NACHT domain ABC_tran PF00005.27 gi|289580089|ref|YP_003478555.1| - 6.2e-06 26.8 0.0 0.12 12.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|289580089|ref|YP_003478555.1| - 7.1e-06 26.0 0.1 0.15 11.8 0.0 2.7 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|289580089|ref|YP_003478555.1| - 1.7e-05 24.3 0.3 0.27 10.6 0.0 3.3 2 1 0 3 3 3 2 KaiC PhoH PF02562.16 gi|289580089|ref|YP_003478555.1| - 1.7e-05 24.4 0.1 0.065 12.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.6 gi|289580089|ref|YP_003478555.1| - 1.8e-05 24.6 0.1 0.18 11.5 0.1 2.6 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|289580089|ref|YP_003478555.1| - 2.8e-05 24.0 0.0 0.14 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|289580089|ref|YP_003478555.1| - 5.3e-05 22.6 0.1 0.18 11.1 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|289580089|ref|YP_003478555.1| - 6.7e-05 22.3 0.0 0.23 10.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|289580089|ref|YP_003478555.1| - 0.00014 21.1 0.0 0.56 9.3 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.18 gi|289580089|ref|YP_003478555.1| - 0.00022 21.1 0.0 0.24 11.2 0.0 2.9 3 0 0 3 3 2 1 Bacterial dnaA protein Vps4_C PF09336.10 gi|289580089|ref|YP_003478555.1| - 0.00024 21.0 0.1 0.26 11.3 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|289580089|ref|YP_003478555.1| - 0.00039 20.9 0.0 1.6 9.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|289580089|ref|YP_003478555.1| - 0.00042 20.3 0.0 1.1 9.2 0.0 3.4 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|289580089|ref|YP_003478555.1| - 0.00047 19.3 0.1 0.55 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|289580089|ref|YP_003478555.1| - 0.00075 19.6 0.0 2.3 8.3 0.0 3.0 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|289580089|ref|YP_003478555.1| - 0.0013 19.1 0.5 2.8 8.3 0.2 2.6 2 1 1 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|289580089|ref|YP_003478555.1| - 0.0014 18.6 0.2 1.9 8.4 0.0 3.0 2 2 0 2 2 2 1 NTPase Rad17 PF03215.15 gi|289580089|ref|YP_003478555.1| - 0.0066 16.4 0.0 4.9 7.0 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain ResIII PF04851.15 gi|289580089|ref|YP_003478555.1| - 0.01 15.8 0.0 3.6 7.6 0.0 2.8 2 2 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|289580089|ref|YP_003478555.1| - 0.01 14.7 0.0 4.1 6.2 0.0 2.6 2 0 0 2 2 2 0 AFG1-like ATPase T2SSE PF00437.20 gi|289580089|ref|YP_003478555.1| - 0.012 14.7 0.0 2.6 7.0 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Zot PF05707.12 gi|289580089|ref|YP_003478555.1| - 0.017 14.8 0.0 0.75 9.4 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) COOH-NH2_lig PF14395.6 gi|289580089|ref|YP_003478555.1| - 0.043 13.0 0.6 7 5.8 0.0 2.8 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 Cytidylate_kin PF02224.18 gi|289580089|ref|YP_003478555.1| - 0.054 13.2 0.1 12 5.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase HJURP_C PF12347.8 gi|289580089|ref|YP_003478555.1| - 0.07 13.2 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat TniB PF05621.11 gi|289580089|ref|YP_003478555.1| - 0.078 12.4 0.0 19 4.6 0.0 3.2 3 1 1 4 4 3 0 Bacterial TniB protein Torsin PF06309.11 gi|289580089|ref|YP_003478555.1| - 0.087 12.9 0.0 5.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.6 gi|289580089|ref|YP_003478555.1| - 0.12 12.1 0.0 22 4.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain DnaG_DnaB_bind PF08278.11 gi|289580089|ref|YP_003478555.1| - 0.16 12.6 1.2 18 5.9 0.0 3.1 3 1 0 3 3 2 0 DNA primase DnaG DnaB-binding Viral_helicase1 PF01443.18 gi|289580089|ref|YP_003478555.1| - 0.18 11.5 0.0 17 5.1 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PIF1 PF05970.14 gi|289580089|ref|YP_003478555.1| - 0.2 10.8 0.0 8 5.5 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase HTH_20 PF12840.7 gi|289580090|ref|YP_003478556.1| - 0.03 14.4 1.1 0.039 14.0 0.4 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Macscav_rec PF03523.13 gi|289580090|ref|YP_003478556.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 Macrophage scavenger receptor BAT PF15915.5 gi|289580091|ref|YP_003478557.1| - 7.6e-21 74.6 0.5 1.1e-20 74.1 0.5 1.1 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|289580091|ref|YP_003478557.1| - 8.2e-16 57.6 0.0 1.4e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|289580091|ref|YP_003478557.1| - 0.00045 20.1 0.0 0.00093 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|289580091|ref|YP_003478557.1| - 0.0033 16.9 0.0 0.019 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|289580091|ref|YP_003478557.1| - 0.013 15.5 0.2 0.096 12.8 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_24 PF13412.6 gi|289580091|ref|YP_003478557.1| - 0.015 14.8 0.1 0.074 12.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Lig_C PF18330.1 gi|289580091|ref|YP_003478557.1| - 0.074 13.1 0.0 0.67 10.0 0.1 2.4 2 1 0 2 2 2 0 Ligase Pab1020 C-terminal region HTH_Crp_2 PF13545.6 gi|289580091|ref|YP_003478557.1| - 0.085 12.9 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289580091|ref|YP_003478557.1| - 0.11 12.3 0.0 0.37 10.6 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|289580091|ref|YP_003478557.1| - 0.16 11.8 0.2 0.98 9.3 0.0 2.3 3 0 0 3 3 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR PF01047.22 gi|289580091|ref|YP_003478557.1| - 0.18 11.7 0.2 0.48 10.4 0.2 1.7 1 1 0 1 1 1 0 MarR family TusA PF01206.17 gi|289580091|ref|YP_003478557.1| - 0.19 11.6 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA AhpC-TSA PF00578.21 gi|289580092|ref|YP_003478558.1| - 8.7e-35 119.3 0.0 1e-34 119.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289580092|ref|YP_003478558.1| - 2.9e-17 62.7 0.0 3.2e-17 62.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|289580092|ref|YP_003478558.1| - 2.7e-06 27.4 0.2 3.8e-06 26.9 0.2 1.4 1 1 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|289580092|ref|YP_003478558.1| - 0.00013 21.6 0.0 0.00014 21.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|289580092|ref|YP_003478558.1| - 0.059 13.5 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Sld5 PF05916.11 gi|289580093|ref|YP_003478559.1| - 0.00032 21.1 0.1 0.00054 20.4 0.1 1.4 1 0 0 1 1 1 1 GINS complex protein CorA PF01544.18 gi|289580093|ref|YP_003478559.1| - 0.25 10.6 0.6 0.39 10.0 0.6 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SPESP1 PF15754.5 gi|289580093|ref|YP_003478559.1| - 1.6 7.9 6.4 1.2 8.3 3.4 2.1 2 0 0 2 2 2 0 Sperm equatorial segment protein 1 DNA_primase_S PF01896.19 gi|289580094|ref|YP_003478560.1| - 3.4e-23 82.6 0.2 3.2e-22 79.4 0.2 2.1 1 1 0 1 1 1 1 DNA primase small subunit Acetyltransf_7 PF13508.7 gi|289580095|ref|YP_003478561.1| - 5.7e-15 55.5 0.1 9.8e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|289580095|ref|YP_003478561.1| - 1.9e-14 53.7 0.0 2.4e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289580095|ref|YP_003478561.1| - 5.6e-14 52.4 0.1 7.5e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|289580095|ref|YP_003478561.1| - 1.4e-10 41.0 0.0 2.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|289580095|ref|YP_003478561.1| - 0.00061 20.0 0.1 0.0013 18.9 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289580095|ref|YP_003478561.1| - 0.003 17.6 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|289580095|ref|YP_003478561.1| - 0.0033 17.6 0.1 0.0056 16.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289580095|ref|YP_003478561.1| - 0.01 15.9 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|289580095|ref|YP_003478561.1| - 0.04 13.6 0.2 0.12 12.1 0.2 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Archease PF01951.16 gi|289580096|ref|YP_003478562.1| - 2.2e-36 125.2 0.9 2.5e-36 125.0 0.9 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF4382 PF14321.6 gi|289580096|ref|YP_003478562.1| - 0.019 15.2 0.3 0.033 14.4 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4382) AGOG PF09171.10 gi|289580096|ref|YP_003478562.1| - 0.098 12.0 0.1 0.12 11.6 0.1 1.1 1 0 0 1 1 1 0 N-glycosylase/DNA lyase DoxX PF07681.12 gi|289580097|ref|YP_003478563.1| - 1.3e-09 38.5 8.5 1.3e-09 38.5 8.5 4.6 3 2 0 3 3 3 2 DoxX DoxD PF04173.13 gi|289580097|ref|YP_003478563.1| - 0.00054 19.9 9.5 0.3 11.0 0.8 3.7 3 1 0 3 3 3 3 TQO small subunit DoxD Wzy_C PF04932.15 gi|289580097|ref|YP_003478563.1| - 0.47 10.1 10.3 1.7 8.3 0.0 3.4 3 1 0 3 3 3 0 O-Antigen ligase RtcB PF01139.17 gi|289580098|ref|YP_003478564.1| - 3.3e-155 517.3 0.0 3.8e-155 517.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Arg_repressor PF01316.21 gi|289580099|ref|YP_003478565.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Radical_SAM PF04055.21 gi|289580100|ref|YP_003478566.1| - 9.9e-25 87.8 0.0 1.8e-24 87.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|289580100|ref|YP_003478566.1| - 1e-15 57.8 0.0 2.7e-15 56.4 0.0 1.7 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|289580100|ref|YP_003478566.1| - 7.8e-08 32.7 0.0 1.5e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|289580100|ref|YP_003478566.1| - 4.4e-07 30.0 0.0 9.9e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain PAS_3 PF08447.12 gi|289580100|ref|YP_003478566.1| - 0.016 15.5 0.0 0.048 14.0 0.0 1.8 1 0 0 1 1 1 0 PAS fold Cytochrom_C PF00034.21 gi|289580100|ref|YP_003478566.1| - 0.08 14.1 0.0 12 7.1 0.0 2.8 3 1 0 3 3 3 0 Cytochrome c DUF4131 PF13567.6 gi|289580101|ref|YP_003478567.1| - 1.8 8.2 8.9 1.1 8.9 0.6 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) DUF58 PF01882.18 gi|289580102|ref|YP_003478568.1| - 5.7e-19 68.2 1.0 1.2e-18 67.1 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|289580102|ref|YP_003478568.1| - 1.1e-10 41.7 0.3 3.9e-10 39.9 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|289580102|ref|YP_003478568.1| - 0.00015 21.9 0.1 0.00041 20.5 0.1 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Glyco_transf_4 PF13439.6 gi|289580102|ref|YP_003478568.1| - 0.029 14.4 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 Glycosyltransferase Family 4 SARAF PF06682.12 gi|289580102|ref|YP_003478568.1| - 0.061 13.0 0.5 0.098 12.3 0.5 1.2 1 0 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis DUF4335 PF14233.6 gi|289580102|ref|YP_003478568.1| - 0.075 12.9 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4335) CARDB PF07705.11 gi|289580102|ref|YP_003478568.1| - 0.095 13.0 0.0 0.3 11.4 0.0 1.9 1 0 0 1 1 1 0 CARDB DUF4129 PF13559.6 gi|289580103|ref|YP_003478569.1| - 2.3e-10 40.6 0.6 6.9e-10 39.1 0.6 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Virul_fac_BrkB PF03631.15 gi|289580103|ref|YP_003478569.1| - 0.0044 16.7 0.9 0.0093 15.6 0.3 1.8 2 0 0 2 2 2 1 Virulence factor BrkB Cyt_c_ox_IV PF12270.8 gi|289580103|ref|YP_003478569.1| - 0.037 14.2 0.6 0.075 13.2 0.6 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV Glucos_trans_II PF14264.6 gi|289580103|ref|YP_003478569.1| - 0.12 11.7 4.4 0.05 13.0 1.6 1.6 2 0 0 2 2 2 0 Glucosyl transferase GtrII DUF2207 PF09972.9 gi|289580103|ref|YP_003478569.1| - 0.17 10.6 0.0 0.55 8.9 0.1 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribosomal_S13 PF00416.22 gi|289580104|ref|YP_003478570.1| - 1.2e-45 155.0 3.9 1.4e-45 154.8 3.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|289580104|ref|YP_003478570.1| - 0.044 12.5 0.0 0.052 12.3 0.0 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) IMS_HHH PF11798.8 gi|289580104|ref|YP_003478570.1| - 0.099 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif HHH_5 PF14520.6 gi|289580104|ref|YP_003478570.1| - 0.11 13.1 0.0 0.24 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.25 gi|289580105|ref|YP_003478571.1| - 1.2e-10 41.0 1.9 1.5e-10 40.6 0.3 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S11 PF00411.19 gi|289580106|ref|YP_003478572.1| - 2e-47 160.1 2.2 2.6e-47 159.8 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|289580106|ref|YP_003478572.1| - 0.02 15.3 0.1 0.028 14.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|289580107|ref|YP_003478573.1| - 1.2e-20 74.0 0.0 4e-20 72.3 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|289580107|ref|YP_003478573.1| - 3.2e-16 58.5 0.0 4.4e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|289580108|ref|YP_003478574.1| - 1.5e-07 31.0 0.0 1.6e-07 30.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|289580108|ref|YP_003478574.1| - 2.4e-06 28.2 0.2 5.7e-06 27.0 0.2 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|289580109|ref|YP_003478575.1| - 2e-09 37.7 0.2 6.2e-07 29.7 0.2 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|289580110|ref|YP_003478576.1| - 1e-32 113.2 0.1 1.1e-32 113.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|289580111|ref|YP_003478577.1| - 9.8e-29 99.4 0.2 1.1e-28 99.3 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|289580112|ref|YP_003478578.1| - 1.8e-11 43.8 0.0 2e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|289580113|ref|YP_003478579.1| - 5.5e-77 258.9 1.2 7.6e-77 258.5 1.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|289580113|ref|YP_003478579.1| - 5.5e-35 120.4 0.9 2.8e-34 118.1 0.2 2.5 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|289580113|ref|YP_003478579.1| - 8.7e-11 41.8 0.1 2e-10 40.6 0.1 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|289580113|ref|YP_003478579.1| - 0.00034 19.9 0.2 0.0006 19.0 0.2 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Ribosomal_S2 PF00318.20 gi|289580114|ref|YP_003478580.1| - 4.4e-24 84.9 0.5 5.6e-14 51.9 1.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Glycos_transf_1 PF00534.20 gi|289580116|ref|YP_003478582.1| - 5.8e-12 45.5 0.0 9.7e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289580116|ref|YP_003478582.1| - 9.3e-12 45.7 1.6 2.4e-11 44.3 0.9 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|289580116|ref|YP_003478582.1| - 1.7e-10 41.2 0.0 5.9e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|289580116|ref|YP_003478582.1| - 1.6e-08 35.1 0.1 3.9e-08 33.8 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF354 PF04007.12 gi|289580117|ref|YP_003478583.1| - 2.3e-10 40.1 0.0 2.7e-06 26.7 0.0 2.4 2 1 1 3 3 3 2 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|289580117|ref|YP_003478583.1| - 0.013 15.6 0.3 0.13 12.3 0.1 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 ThiP_synth PF10120.9 gi|289580118|ref|YP_003478584.1| - 6.4e-52 175.5 0.1 9.1e-52 175.0 0.1 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|289580118|ref|YP_003478584.1| - 1.4e-06 28.2 0.4 7.2e-06 26.0 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 gi|289580118|ref|YP_003478584.1| - 8.1e-05 22.3 0.1 0.0004 20.1 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|289580118|ref|YP_003478584.1| - 9.8e-05 22.6 1.7 0.00061 20.1 0.1 3.0 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|289580118|ref|YP_003478584.1| - 0.00079 18.9 0.1 0.0023 17.4 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|289580118|ref|YP_003478584.1| - 0.00098 19.0 0.2 0.011 15.6 0.1 2.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|289580118|ref|YP_003478584.1| - 0.0047 16.5 0.0 0.0099 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|289580118|ref|YP_003478584.1| - 0.0054 16.7 0.2 0.012 15.5 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|289580118|ref|YP_003478584.1| - 0.0071 16.3 0.0 0.02 14.9 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289580118|ref|YP_003478584.1| - 0.013 15.1 0.1 0.027 14.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|289580118|ref|YP_003478584.1| - 0.027 14.4 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|289580118|ref|YP_003478584.1| - 0.027 14.6 0.0 0.077 13.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|289580118|ref|YP_003478584.1| - 0.028 14.3 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT RepB PF07506.11 gi|289580118|ref|YP_003478584.1| - 0.033 14.3 0.0 0.059 13.5 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_11 PF08279.12 gi|289580118|ref|YP_003478584.1| - 0.034 14.1 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_26 PF13443.6 gi|289580118|ref|YP_003478584.1| - 0.045 14.2 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.6 gi|289580118|ref|YP_003478584.1| - 0.056 13.2 0.1 0.22 11.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289580118|ref|YP_003478584.1| - 0.069 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cro PF09048.10 gi|289580118|ref|YP_003478584.1| - 0.11 12.6 0.2 0.2 11.7 0.2 1.4 1 0 0 1 1 1 0 Cro GerE PF00196.19 gi|289580118|ref|YP_003478584.1| - 0.22 11.1 0.1 0.42 10.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR PF01047.22 gi|289580118|ref|YP_003478584.1| - 0.24 11.4 0.2 0.94 9.5 0.1 2.0 2 0 0 2 2 2 0 MarR family HATPase_c PF02518.26 gi|289580119|ref|YP_003478585.1| - 8.5e-27 93.9 0.0 5e-26 91.4 0.0 2.0 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289580119|ref|YP_003478585.1| - 1e-11 44.7 0.1 1e-11 44.7 0.1 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|289580119|ref|YP_003478585.1| - 0.0015 18.5 0.0 0.0032 17.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|289580119|ref|YP_003478585.1| - 0.0017 18.2 0.0 0.006 16.5 0.0 1.9 1 1 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|289580119|ref|YP_003478585.1| - 0.0048 16.5 1.6 0.013 15.1 1.2 2.0 1 1 1 2 2 2 1 Archaeal 4TM region of histidine kinase ZapB PF06005.12 gi|289580119|ref|YP_003478585.1| - 0.0087 16.5 2.9 0.0087 16.5 2.9 2.2 2 0 0 2 2 2 1 Cell division protein ZapB MctB PF11382.8 gi|289580119|ref|YP_003478585.1| - 0.0098 15.6 0.7 0.0098 15.6 0.7 1.8 2 0 0 2 2 2 1 Copper transport outer membrane protein, MctB CPSF73-100_C PF11718.8 gi|289580119|ref|YP_003478585.1| - 0.029 13.9 0.1 0.045 13.3 0.1 1.2 1 0 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term PilJ PF13675.6 gi|289580119|ref|YP_003478585.1| - 0.051 13.6 4.6 0.53 10.3 1.2 2.3 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Nup54 PF13874.6 gi|289580119|ref|YP_003478585.1| - 0.069 13.3 2.7 0.16 12.1 2.7 1.7 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Syntaxin-6_N PF09177.11 gi|289580119|ref|YP_003478585.1| - 0.085 13.4 2.6 0.098 13.2 0.9 2.0 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF4381 PF14316.6 gi|289580119|ref|YP_003478585.1| - 0.13 12.5 1.0 2.2 8.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF4200 PF13863.6 gi|289580119|ref|YP_003478585.1| - 0.16 12.4 4.5 0.31 11.4 4.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) TMF_TATA_bd PF12325.8 gi|289580119|ref|YP_003478585.1| - 0.16 12.2 5.1 0.35 11.1 5.1 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HMMR_N PF15905.5 gi|289580119|ref|YP_003478585.1| - 0.21 11.0 3.0 0.37 10.2 3.0 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal His_kinase PF06580.13 gi|289580119|ref|YP_003478585.1| - 0.21 11.9 0.8 0.47 10.8 0.8 1.6 1 0 0 1 1 1 0 Histidine kinase TctB PF07331.11 gi|289580119|ref|YP_003478585.1| - 0.22 11.8 6.0 0.45 10.8 6.0 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3552 PF12072.8 gi|289580119|ref|YP_003478585.1| - 0.23 10.9 7.9 0.38 10.1 7.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) KxDL PF10241.9 gi|289580119|ref|YP_003478585.1| - 0.45 10.8 2.3 0.63 10.4 0.6 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein DUF202 PF02656.15 gi|289580119|ref|YP_003478585.1| - 1.7 9.1 4.3 2 8.9 1.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF202) BPD_transp_1 PF00528.22 gi|289580120|ref|YP_003478586.1| - 1.1e-09 38.2 9.6 1.1e-09 38.2 9.6 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3754 PF12576.8 gi|289580120|ref|YP_003478586.1| - 6.3 6.7 5.9 8.8 6.3 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) ABC_tran PF00005.27 gi|289580121|ref|YP_003478587.1| - 1.1e-28 100.4 0.0 1.5e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289580121|ref|YP_003478587.1| - 1.8e-07 31.3 0.0 0.00021 21.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|289580121|ref|YP_003478587.1| - 2.4e-06 27.6 0.0 7.8e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|289580121|ref|YP_003478587.1| - 5.2e-05 23.7 0.1 9.7e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|289580121|ref|YP_003478587.1| - 0.00012 22.7 0.0 0.00016 22.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289580121|ref|YP_003478587.1| - 0.0035 17.6 0.1 0.011 16.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|289580121|ref|YP_003478587.1| - 0.0048 16.5 0.2 0.039 13.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|289580121|ref|YP_003478587.1| - 0.0059 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|289580121|ref|YP_003478587.1| - 0.011 15.5 0.1 0.028 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|289580121|ref|YP_003478587.1| - 0.018 14.8 0.0 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|289580121|ref|YP_003478587.1| - 0.022 14.9 0.1 0.063 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|289580121|ref|YP_003478587.1| - 0.052 13.3 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.6 gi|289580121|ref|YP_003478587.1| - 0.075 13.3 0.2 1 9.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|289580121|ref|YP_003478587.1| - 0.11 12.4 0.3 0.39 10.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|289580121|ref|YP_003478587.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|289580121|ref|YP_003478587.1| - 0.2 11.2 0.1 0.38 10.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Phosphonate-bd PF12974.7 gi|289580122|ref|YP_003478588.1| - 1.2e-51 175.7 0.1 1.4e-51 175.4 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|289580122|ref|YP_003478588.1| - 0.00031 20.8 0.0 0.00054 20.0 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|289580122|ref|YP_003478588.1| - 0.0018 17.7 0.0 0.0076 15.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 GHMP_kinases_C PF08544.13 gi|289580123|ref|YP_003478589.1| - 1.3e-16 60.8 1.5 1.8e-15 57.1 0.3 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|289580123|ref|YP_003478589.1| - 1.2e-13 51.1 0.4 3e-13 49.8 0.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|289580123|ref|YP_003478589.1| - 0.00079 18.9 0.8 0.0016 18.0 0.1 1.9 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|289580124|ref|YP_003478590.1| - 5.9e-36 124.3 2.8 7.1e-36 124.0 2.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family AA_permease_2 PF13520.6 gi|289580125|ref|YP_003478591.1| - 9.5e-45 153.2 43.6 1.2e-44 152.8 43.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|289580125|ref|YP_003478591.1| - 6.5e-42 143.7 43.1 8.3e-42 143.4 43.1 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|289580125|ref|YP_003478591.1| - 6.4e-11 42.9 3.4 3.3e-08 34.1 0.1 2.7 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|289580125|ref|YP_003478591.1| - 0.0028 16.6 20.4 0.0028 16.6 20.4 2.0 2 0 0 2 2 2 1 Spore germination protein Cloacin PF03515.14 gi|289580125|ref|YP_003478591.1| - 0.038 13.7 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain Lactamase_B_2 PF12706.7 gi|289580126|ref|YP_003478592.1| - 1.3e-09 37.8 0.9 6.2e-07 29.1 0.1 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289580126|ref|YP_003478592.1| - 7.1e-07 29.4 3.4 1e-06 28.9 2.3 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|289580126|ref|YP_003478592.1| - 4.3e-06 26.6 0.2 0.00015 21.7 0.0 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|289580127|ref|YP_003478593.1| - 4.4e-66 222.6 0.5 5.2e-66 222.3 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase MS_channel PF00924.18 gi|289580128|ref|YP_003478594.1| - 1.3e-47 162.0 1.5 2.3e-47 161.2 1.5 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel Abhydrolase_9_N PF15420.6 gi|289580128|ref|YP_003478594.1| - 1.4 8.9 15.9 0.78 9.7 5.6 2.4 1 1 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus tRNA-synt_1c PF00749.21 gi|289580129|ref|YP_003478595.1| - 5.6e-58 196.3 0.0 6.9e-58 196.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|289580129|ref|YP_003478595.1| - 6e-19 68.6 0.0 2.5e-18 66.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain TAT_signal PF10518.9 gi|289580130|ref|YP_003478596.1| - 2.7e-07 30.2 0.9 3.4e-07 29.8 0.9 1.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|289580130|ref|YP_003478596.1| - 1.7e-05 25.2 0.0 3.1e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF456 PF04306.13 gi|289580132|ref|YP_003478598.1| - 2.9e-27 95.6 24.2 2.9e-27 95.6 24.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Claudin_2 PF13903.6 gi|289580132|ref|YP_003478598.1| - 5.4 6.7 15.9 0.19 11.5 7.9 2.4 1 1 2 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction adh_short PF00106.25 gi|289580133|ref|YP_003478599.1| - 1.1e-31 109.9 0.2 1.4e-31 109.5 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289580133|ref|YP_003478599.1| - 1.2e-24 87.2 0.6 1.5e-24 86.9 0.6 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|289580133|ref|YP_003478599.1| - 1.1e-08 35.2 0.6 2.2e-08 34.3 0.6 1.5 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|289580133|ref|YP_003478599.1| - 4.1e-07 30.1 0.7 8.2e-07 29.1 0.7 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289580133|ref|YP_003478599.1| - 1.1e-05 25.0 1.4 3.3e-05 23.5 1.4 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DFP PF04127.15 gi|289580133|ref|YP_003478599.1| - 0.00086 19.2 0.5 0.0014 18.5 0.5 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein RmlD_sub_bind PF04321.17 gi|289580133|ref|YP_003478599.1| - 0.0018 17.5 0.5 0.003 16.7 0.5 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain ApbA PF02558.16 gi|289580133|ref|YP_003478599.1| - 0.029 14.0 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|289580133|ref|YP_003478599.1| - 0.044 13.1 0.0 0.09 12.1 0.0 1.6 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ldh_1_N PF00056.23 gi|289580133|ref|YP_003478599.1| - 0.072 13.2 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Helicase_RecD PF05127.14 gi|289580134|ref|YP_003478600.1| - 3e-47 160.7 0.0 5e-47 160.0 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|289580134|ref|YP_003478600.1| - 6.1e-45 153.4 0.0 1.7e-28 99.6 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|289580134|ref|YP_003478600.1| - 3.3e-26 91.0 0.0 8.2e-25 86.6 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|289580134|ref|YP_003478600.1| - 4.1e-06 26.7 0.2 1.1e-05 25.2 0.2 1.8 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.7 gi|289580134|ref|YP_003478600.1| - 0.00049 20.5 0.0 0.0019 18.6 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|289580134|ref|YP_003478600.1| - 0.0082 16.1 0.0 0.024 14.6 0.0 1.8 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_10 PF13673.7 gi|289580134|ref|YP_003478600.1| - 0.013 15.5 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Ribosomal_L7Ae PF01248.26 gi|289580135|ref|YP_003478601.1| - 2.2e-24 85.0 0.0 2.8e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|289580135|ref|YP_003478601.1| - 8.8e-06 25.5 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|289580135|ref|YP_003478601.1| - 0.023 15.2 0.0 0.04 14.4 0.0 1.6 1 1 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|289580135|ref|YP_003478601.1| - 0.37 11.1 2.4 6.8 7.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.18 gi|289580136|ref|YP_003478602.1| - 1.4e-28 98.7 0.8 1.5e-28 98.5 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|289580137|ref|YP_003478603.1| - 6e-22 77.7 0.0 7.4e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e TFIIA PF03153.13 gi|289580137|ref|YP_003478603.1| - 2.2 8.2 13.1 2.4 8.1 13.1 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit NDK PF00334.19 gi|289580138|ref|YP_003478604.1| - 5.9e-53 178.5 0.0 6.9e-53 178.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase HTH_20 PF12840.7 gi|289580139|ref|YP_003478605.1| - 0.068 13.2 1.1 0.95 9.6 1.1 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain Sod_Fe_N PF00081.22 gi|289580140|ref|YP_003478606.1| - 7e-30 103.3 0.5 1.3e-29 102.5 0.5 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|289580140|ref|YP_003478606.1| - 1.7e-27 95.6 0.0 2.5e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain FAD-oxidase_C PF02913.19 gi|289580141|ref|YP_003478607.1| - 3.4e-63 213.6 0.0 5.9e-63 212.8 0.0 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|289580141|ref|YP_003478607.1| - 1.5e-41 141.4 0.1 3.3e-41 140.3 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|289580141|ref|YP_003478607.1| - 8e-11 42.2 3.6 1.8e-10 41.1 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289580141|ref|YP_003478607.1| - 2.5e-10 40.8 3.3 4.6e-10 39.9 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289580141|ref|YP_003478607.1| - 8.9e-06 25.7 2.5 0.011 15.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289580141|ref|YP_003478607.1| - 0.00028 21.4 4.2 0.00071 20.1 4.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289580141|ref|YP_003478607.1| - 0.0015 18.6 1.7 0.15 12.3 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|289580141|ref|YP_003478607.1| - 0.0025 18.0 0.1 0.13 12.5 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|289580141|ref|YP_003478607.1| - 0.0056 16.8 5.7 0.054 13.7 6.8 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289580141|ref|YP_003478607.1| - 0.014 15.5 13.7 0.36 11.0 2.2 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|289580141|ref|YP_003478607.1| - 0.032 14.1 14.8 0.054 13.3 3.2 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|289580141|ref|YP_003478607.1| - 0.12 13.0 12.3 0.25 11.9 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|289580141|ref|YP_003478607.1| - 0.19 12.7 3.4 0.52 11.3 3.4 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|289580141|ref|YP_003478607.1| - 0.31 11.2 12.1 0.45 10.7 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain SBP_bac_6 PF13343.6 gi|289580144|ref|YP_003478610.1| - 5.5e-25 88.2 0.0 8e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|289580144|ref|YP_003478610.1| - 1.1e-15 58.2 0.1 1.5e-15 57.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289580144|ref|YP_003478610.1| - 0.00012 22.2 0.9 0.00022 21.3 0.9 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289580144|ref|YP_003478610.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|289580145|ref|YP_003478611.1| - 6e-30 104.4 45.6 7.1e-18 65.0 12.3 3.5 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3464 PF11947.8 gi|289580145|ref|YP_003478611.1| - 2.3 8.0 4.5 7.3 6.3 4.5 1.9 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 ABC_tran PF00005.27 gi|289580146|ref|YP_003478612.1| - 1.9e-34 119.1 0.0 3.2e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289580146|ref|YP_003478612.1| - 7.2e-10 39.2 0.1 1.9e-05 24.6 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|289580146|ref|YP_003478612.1| - 6.8e-06 26.2 1.7 4e-05 23.7 0.1 2.9 3 0 0 3 3 3 1 TOBE domain AAA_22 PF13401.6 gi|289580146|ref|YP_003478612.1| - 1.4e-05 25.4 0.0 5.4e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain TOBE PF03459.17 gi|289580146|ref|YP_003478612.1| - 0.00028 21.1 0.4 0.06 13.6 0.0 2.7 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|289580146|ref|YP_003478612.1| - 0.00032 20.2 0.0 0.027 13.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|289580146|ref|YP_003478612.1| - 0.0012 19.3 0.7 0.018 15.5 0.7 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289580146|ref|YP_003478612.1| - 0.0021 18.5 1.1 0.01 16.2 1.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|289580146|ref|YP_003478612.1| - 0.0022 17.9 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|289580146|ref|YP_003478612.1| - 0.015 15.3 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|289580146|ref|YP_003478612.1| - 0.039 13.7 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|289580146|ref|YP_003478612.1| - 0.055 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289580146|ref|YP_003478612.1| - 0.11 13.0 0.1 0.24 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|289580146|ref|YP_003478612.1| - 0.11 12.7 0.3 0.44 10.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|289580146|ref|YP_003478612.1| - 0.13 12.5 0.3 1.2 9.4 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Lactamase_B PF00753.27 gi|289580147|ref|YP_003478613.1| - 7.3e-20 71.8 12.3 5.9e-18 65.6 12.2 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289580147|ref|YP_003478613.1| - 2.7e-05 23.8 3.0 4.1e-05 23.2 3.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|289580147|ref|YP_003478613.1| - 0.019 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|289580147|ref|YP_003478613.1| - 0.021 14.7 0.3 0.033 14.1 0.3 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PMC2NT PF08066.12 gi|289580147|ref|YP_003478613.1| - 0.11 13.2 1.0 0.82 10.4 0.0 2.3 2 1 0 2 2 2 0 PMC2NT (NUC016) domain DUF4897 PF16238.5 gi|289580148|ref|YP_003478614.1| - 7.8e-05 22.6 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_IclR PF09339.10 gi|289580148|ref|YP_003478614.1| - 0.00023 20.9 0.0 0.00044 20.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289580148|ref|YP_003478614.1| - 0.00085 18.8 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289580148|ref|YP_003478614.1| - 0.0034 17.2 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289580148|ref|YP_003478614.1| - 0.15 12.1 0.1 0.35 10.9 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|289580148|ref|YP_003478614.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_integrase PF00589.22 gi|289580149|ref|YP_003478615.1| - 1.4e-15 57.5 0.2 3.2e-15 56.3 0.2 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|289580149|ref|YP_003478615.1| - 3.5e-05 24.2 1.8 6.6e-05 23.3 0.1 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|289580149|ref|YP_003478615.1| - 0.15 12.4 1.2 1.4 9.2 0.1 2.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain MgtE PF01769.16 gi|289580152|ref|YP_003478618.1| - 1.7e-29 102.7 7.0 3e-29 101.9 7.0 1.4 1 0 0 1 1 1 1 Divalent cation transporter DUF962 PF06127.11 gi|289580152|ref|YP_003478618.1| - 0.016 15.3 0.7 0.027 14.6 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF962) DUF3021 PF11457.8 gi|289580152|ref|YP_003478618.1| - 0.12 12.7 8.5 0.18 12.2 8.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) Phage_holin_3_7 PF05449.11 gi|289580152|ref|YP_003478618.1| - 0.35 10.9 7.1 0.91 9.6 0.5 2.3 2 0 0 2 2 2 0 Putative 3TM holin, Phage_holin_3 DUF5518 PF17647.1 gi|289580152|ref|YP_003478618.1| - 1.2 9.4 19.0 0.093 12.9 10.7 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5518) CBS PF00571.28 gi|289580153|ref|YP_003478619.1| - 5.2e-22 78.1 2.0 1.4e-11 44.7 0.4 2.1 2 0 0 2 2 2 2 CBS domain PhoU PF01895.19 gi|289580154|ref|YP_003478620.1| - 6.3e-42 142.0 7.3 5.8e-25 87.6 0.8 2.1 2 0 0 2 2 2 2 PhoU domain CBS PF00571.28 gi|289580155|ref|YP_003478621.1| - 7e-17 61.6 1.7 7.3e-10 39.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain PB1 PF00564.24 gi|289580155|ref|YP_003478621.1| - 0.0046 16.8 0.0 1.5 8.8 0.0 2.1 2 0 0 2 2 2 2 PB1 domain PEPcase PF00311.17 gi|289580156|ref|YP_003478622.1| - 3.3e-237 789.5 0.1 9e-237 788.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|289580156|ref|YP_003478622.1| - 0.0007 18.2 0.0 0.0012 17.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M16 PF00675.20 gi|289580156|ref|YP_003478622.1| - 0.13 12.2 0.1 0.13 12.2 0.1 2.3 3 0 0 3 3 3 0 Insulinase (Peptidase family M16) GvpL_GvpF PF06386.11 gi|289580156|ref|YP_003478622.1| - 1.4 8.8 8.3 0.21 11.5 2.5 2.5 2 1 0 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF AAA_3 PF07726.11 gi|289580157|ref|YP_003478623.1| - 2.7e-66 221.4 0.4 7.9e-66 219.9 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|289580157|ref|YP_003478623.1| - 8.3e-20 70.4 2.0 8.6e-20 70.4 0.6 1.8 2 0 0 2 2 1 1 AAA lid domain AAA_5 PF07728.14 gi|289580157|ref|YP_003478623.1| - 6.8e-14 52.0 0.0 3.7e-13 49.7 0.0 2.3 3 1 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|289580157|ref|YP_003478623.1| - 5.5e-07 30.1 0.0 2e-06 28.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|289580157|ref|YP_003478623.1| - 1.7e-05 24.6 0.0 0.00013 21.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|289580157|ref|YP_003478623.1| - 0.00092 18.6 0.1 0.42 10.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|289580157|ref|YP_003478623.1| - 0.0014 17.8 0.0 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|289580157|ref|YP_003478623.1| - 0.017 14.8 0.0 0.25 11.1 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|289580157|ref|YP_003478623.1| - 0.056 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF3071 PF11268.8 gi|289580157|ref|YP_003478623.1| - 0.1 12.7 0.2 0.26 11.3 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) RHH_1 PF01402.21 gi|289580157|ref|YP_003478623.1| - 0.11 12.4 0.7 0.48 10.4 0.2 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family AAA_19 PF13245.6 gi|289580157|ref|YP_003478623.1| - 0.14 12.5 0.0 15 5.9 0.1 2.6 2 0 0 2 2 2 0 AAA domain Ferredoxin_N PF16947.5 gi|289580158|ref|YP_003478624.1| - 2.2e-33 114.2 7.7 2.2e-33 114.2 7.7 3.3 2 0 0 2 2 2 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|289580158|ref|YP_003478624.1| - 9.1e-16 58.2 18.1 6.5e-08 33.0 4.2 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|289580158|ref|YP_003478624.1| - 1.4e-11 44.4 3.1 1.4e-11 44.4 3.1 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289580158|ref|YP_003478624.1| - 2.2e-09 37.3 21.1 4.6e-07 29.8 1.1 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|289580158|ref|YP_003478624.1| - 9.9e-08 31.5 32.9 0.00011 21.9 3.5 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|289580158|ref|YP_003478624.1| - 2.6e-07 30.4 31.1 0.0013 18.7 2.9 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|289580158|ref|YP_003478624.1| - 8.6e-07 29.0 24.0 0.0054 16.9 5.7 3.9 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289580158|ref|YP_003478624.1| - 4.4e-06 26.5 31.0 0.0003 20.7 1.9 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|289580158|ref|YP_003478624.1| - 0.00072 20.0 17.2 0.077 13.6 1.8 3.9 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|289580158|ref|YP_003478624.1| - 0.0032 18.3 39.7 0.65 11.1 5.1 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|289580158|ref|YP_003478624.1| - 0.0035 17.8 21.6 0.09 13.2 5.5 3.5 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|289580158|ref|YP_003478624.1| - 0.0043 18.0 22.9 0.35 11.9 0.1 4.6 3 1 1 4 4 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|289580158|ref|YP_003478624.1| - 0.013 15.9 27.1 0.14 12.7 3.3 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|289580158|ref|YP_003478624.1| - 0.15 12.2 25.5 2.9 8.1 1.6 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|289580158|ref|YP_003478624.1| - 0.23 11.2 5.7 1.9 8.3 1.7 2.7 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DIMCO_N PF16844.5 gi|289580158|ref|YP_003478624.1| - 0.36 11.2 1.6 22 5.5 0.3 2.9 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor, N-terminal DUF1656 PF07869.12 gi|289580159|ref|YP_003478625.1| - 0.028 14.4 2.5 0.028 14.4 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) HMGL-like PF00682.19 gi|289580160|ref|YP_003478626.1| - 5e-65 219.7 1.5 9.8e-65 218.7 1.5 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|289580160|ref|YP_003478626.1| - 6.7e-30 103.7 3.0 1.3e-29 102.7 3.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF192 PF02643.15 gi|289580161|ref|YP_003478627.1| - 5.8e-22 77.7 0.0 6.7e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Reovirus_L2 PF06016.11 gi|289580161|ref|YP_003478627.1| - 0.039 11.2 0.0 0.046 10.9 0.0 1.0 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) MCPsignal PF00015.21 gi|289580162|ref|YP_003478628.1| - 1.9e-30 105.9 26.0 1.9e-30 105.9 26.0 4.9 2 2 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289580162|ref|YP_003478628.1| - 1.6e-08 34.7 3.1 9.4e-07 29.1 0.1 4.7 6 0 0 6 6 5 2 HAMP domain Laminin_II PF06009.12 gi|289580162|ref|YP_003478628.1| - 0.0037 17.3 44.8 0.0065 16.5 5.2 5.6 3 2 2 5 5 5 3 Laminin Domain II DUF1664 PF07889.12 gi|289580162|ref|YP_003478628.1| - 0.0072 16.4 38.0 0.045 13.8 3.9 5.6 3 2 2 6 6 6 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|289580162|ref|YP_003478628.1| - 0.019 15.1 30.1 0.021 15.0 2.9 4.8 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family DUF948 PF06103.11 gi|289580162|ref|YP_003478628.1| - 0.039 14.2 51.7 0.16 12.3 2.1 7.7 3 1 5 8 8 8 0 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.6 gi|289580162|ref|YP_003478628.1| - 0.067 13.6 17.9 0.99 9.8 0.8 5.6 1 1 3 4 4 4 0 Syntaxin-like protein Serine_rich PF08824.10 gi|289580162|ref|YP_003478628.1| - 0.36 10.8 25.6 0.014 15.4 5.3 4.5 1 1 3 4 4 4 0 Serine rich protein interaction domain HMMR_N PF15905.5 gi|289580162|ref|YP_003478628.1| - 0.49 9.8 41.8 0.6 9.5 2.7 4.3 1 1 3 4 4 4 0 Hyaluronan mediated motility receptor N-terminal NPV_P10 PF05531.12 gi|289580162|ref|YP_003478628.1| - 1.1 9.8 37.7 0.14 12.6 2.7 6.4 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein Serum_albumin PF00273.20 gi|289580162|ref|YP_003478628.1| - 4.4 7.0 6.7 1.8 8.3 0.9 2.8 2 1 0 2 2 2 0 Serum albumin family COG2 PF06148.11 gi|289580162|ref|YP_003478628.1| - 4.5 7.4 32.7 0.28 11.2 2.1 5.6 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Occludin_ELL PF07303.13 gi|289580162|ref|YP_003478628.1| - 4.8 8.0 14.7 27 5.6 0.1 5.5 3 2 3 6 6 6 0 Occludin homology domain DUF3584 PF12128.8 gi|289580162|ref|YP_003478628.1| - 7.9 3.8 50.3 1.3 6.5 40.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Exonuc_VII_S PF02609.16 gi|289580162|ref|YP_003478628.1| - 8.4 6.5 14.3 4 7.6 0.2 4.5 5 0 0 5 5 4 0 Exonuclease VII small subunit Lebercilin PF15619.6 gi|289580162|ref|YP_003478628.1| - 9.2 5.9 27.6 0.35 10.5 4.0 4.2 2 2 1 4 4 4 0 Ciliary protein causing Leber congenital amaurosis disease C1_1 PF00130.22 gi|289580163|ref|YP_003478629.1| - 0.016 15.0 1.9 0.053 13.4 1.9 1.9 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RecA_dep_nuc PF16786.5 gi|289580163|ref|YP_003478629.1| - 0.06 13.5 0.3 0.094 12.9 0.3 1.3 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease Bactofilin PF04519.13 gi|289580165|ref|YP_003478631.1| - 2.1e-12 47.2 6.8 3.6e-08 33.6 0.2 3.5 2 2 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|289580165|ref|YP_003478631.1| - 1.4e-08 34.2 7.7 0.01 15.5 0.0 7.2 8 0 0 8 8 8 1 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|289580165|ref|YP_003478631.1| - 0.00015 21.5 0.0 1 8.9 0.0 3.1 2 1 1 3 3 3 2 Protein of unknown function (DUF3494) Hexapep_2 PF14602.6 gi|289580165|ref|YP_003478631.1| - 0.045 13.5 13.7 3.1 7.6 0.1 5.5 5 3 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF3672 PF12421.8 gi|289580165|ref|YP_003478631.1| - 0.063 13.2 1.3 14 5.6 0.0 3.4 2 1 1 3 3 3 0 Fibronectin type III protein ETF PF01012.21 gi|289580166|ref|YP_003478632.1| - 1.8e-37 129.0 0.0 2.3e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|289580167|ref|YP_003478633.1| - 5.2e-26 90.5 0.2 1.5e-25 89.0 0.2 1.8 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|289580167|ref|YP_003478633.1| - 1.7e-20 73.7 0.0 4.6e-20 72.3 0.0 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain FAD_binding_3 PF01494.19 gi|289580168|ref|YP_003478634.1| - 5.4e-09 35.8 5.3 6.6e-08 32.2 5.3 2.4 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|289580168|ref|YP_003478634.1| - 5.7e-07 29.2 0.0 8.8e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289580168|ref|YP_003478634.1| - 6.6e-07 28.8 1.4 4.5e-05 22.7 1.4 2.2 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|289580168|ref|YP_003478634.1| - 1.9e-06 27.7 4.8 0.00035 20.3 1.3 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289580168|ref|YP_003478634.1| - 3.8e-06 26.4 2.6 0.0018 17.6 1.0 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289580168|ref|YP_003478634.1| - 3e-05 24.2 0.4 3e-05 24.2 0.4 2.1 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|289580168|ref|YP_003478634.1| - 0.0024 16.6 2.0 0.0039 16.0 0.8 1.8 2 0 0 2 2 2 1 HI0933-like protein ETF_QO PF05187.13 gi|289580168|ref|YP_003478634.1| - 0.0062 16.7 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Thi4 PF01946.17 gi|289580168|ref|YP_003478634.1| - 0.0069 15.7 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|289580168|ref|YP_003478634.1| - 0.012 14.9 0.5 0.019 14.2 0.5 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|289580168|ref|YP_003478634.1| - 0.017 14.2 0.8 0.71 8.9 0.6 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|289580168|ref|YP_003478634.1| - 0.15 11.4 0.0 2.2 7.5 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase Trp_halogenase PF04820.14 gi|289580168|ref|YP_003478634.1| - 0.18 10.6 1.3 0.61 8.9 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 gi|289580168|ref|YP_003478634.1| - 0.42 9.6 3.6 0.41 9.7 1.9 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4_2 PF12797.7 gi|289580168|ref|YP_003478634.1| - 3.1 8.1 5.5 0.4 10.9 0.9 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_10 PF04967.12 gi|289580170|ref|YP_003478636.1| - 1.4e-19 69.6 0.1 2.6e-19 68.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580170|ref|YP_003478636.1| - 1.7e-06 28.0 2.9 1.7e-06 28.0 2.9 1.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|289580170|ref|YP_003478636.1| - 0.00058 19.7 0.3 0.0014 18.4 0.0 1.8 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|289580170|ref|YP_003478636.1| - 0.0015 18.0 0.0 0.0015 18.0 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|289580170|ref|YP_003478636.1| - 0.0021 17.6 0.7 0.0044 16.5 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|289580170|ref|YP_003478636.1| - 0.0055 16.5 0.0 0.015 15.1 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|289580170|ref|YP_003478636.1| - 0.011 15.8 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289580170|ref|YP_003478636.1| - 0.013 15.2 0.1 0.13 12.0 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 YflT PF11181.8 gi|289580170|ref|YP_003478636.1| - 0.017 15.6 0.0 0.038 14.5 0.0 1.6 1 0 0 1 1 1 0 Heat induced stress protein YflT HTH_23 PF13384.6 gi|289580170|ref|YP_003478636.1| - 0.072 12.9 0.1 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HalOD1 PF18545.1 gi|289580171|ref|YP_003478637.1| - 1.5e-20 73.3 1.7 2.6e-20 72.5 1.7 1.4 1 0 0 1 1 1 1 Halobacterial output domain 1 PhoU PF01895.19 gi|289580172|ref|YP_003478638.1| - 2.8e-39 133.4 12.9 4.6e-21 75.1 1.2 2.2 2 0 0 2 2 2 2 PhoU domain HNH PF01844.23 gi|289580173|ref|YP_003478639.1| - 2.8e-10 40.2 2.4 2.8e-10 40.2 2.4 3.1 4 0 0 4 4 4 1 HNH endonuclease HNH_5 PF14279.6 gi|289580173|ref|YP_003478639.1| - 2.1e-07 30.7 0.4 2.1e-07 30.7 0.4 2.6 3 0 0 3 3 3 1 HNH endonuclease HNH_2 PF13391.6 gi|289580173|ref|YP_003478639.1| - 5.9e-05 23.1 0.7 0.00044 20.3 0.7 2.3 1 1 0 1 1 1 1 HNH endonuclease zinc_ribbon_2 PF13240.6 gi|289580173|ref|YP_003478639.1| - 0.79 9.5 5.0 6.5 6.6 1.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain ABC_tran PF00005.27 gi|289580174|ref|YP_003478640.1| - 3.1e-30 105.5 0.0 2e-29 102.8 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289580174|ref|YP_003478640.1| - 6.8e-10 39.2 0.0 0.0009 19.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289580174|ref|YP_003478640.1| - 2.2e-08 33.8 0.6 2.8e-07 30.2 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289580174|ref|YP_003478640.1| - 8.5e-05 22.2 0.2 0.00082 19.1 0.0 2.6 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|289580174|ref|YP_003478640.1| - 0.00016 21.5 0.1 0.0028 17.4 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289580174|ref|YP_003478640.1| - 0.00016 21.9 0.0 0.00088 19.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|289580174|ref|YP_003478640.1| - 0.00037 20.4 0.0 0.0019 18.1 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|289580174|ref|YP_003478640.1| - 0.003 18.0 0.4 0.017 15.5 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|289580174|ref|YP_003478640.1| - 0.0032 17.1 0.1 0.014 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289580174|ref|YP_003478640.1| - 0.0096 16.5 0.0 0.031 14.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|289580174|ref|YP_003478640.1| - 0.011 16.3 0.3 0.022 15.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|289580174|ref|YP_003478640.1| - 0.021 15.0 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|289580174|ref|YP_003478640.1| - 0.032 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain DeoRC PF00455.22 gi|289580174|ref|YP_003478640.1| - 0.033 14.1 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain PRK PF00485.18 gi|289580174|ref|YP_003478640.1| - 0.058 13.1 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|289580174|ref|YP_003478640.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|289580174|ref|YP_003478640.1| - 0.075 12.8 1.8 0.64 9.7 0.0 2.4 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|289580174|ref|YP_003478640.1| - 0.09 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Shigella_OspC PF06128.11 gi|289580174|ref|YP_003478640.1| - 0.093 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein AAA PF00004.29 gi|289580174|ref|YP_003478640.1| - 0.095 13.1 0.1 0.74 10.2 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|289580174|ref|YP_003478640.1| - 0.1 12.6 0.1 0.73 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|289580174|ref|YP_003478640.1| - 0.17 12.3 0.0 0.46 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|289580175|ref|YP_003478641.1| - 2.2e-22 79.7 12.5 2.2e-22 79.7 12.5 2.6 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3333 PF11812.8 gi|289580175|ref|YP_003478641.1| - 0.27 11.4 1.5 1 9.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) BPD_transp_1 PF00528.22 gi|289580176|ref|YP_003478642.1| - 9.2e-19 67.9 19.2 9.2e-19 67.9 19.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|289580176|ref|YP_003478642.1| - 0.83 10.0 0.1 0.83 10.0 0.1 3.0 3 0 0 3 3 3 0 Sigma factor regulator N-terminal PBP_like PF12727.7 gi|289580177|ref|YP_003478643.1| - 4.2e-23 81.5 0.0 7.6e-23 80.6 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|289580177|ref|YP_003478643.1| - 3.3e-19 69.7 0.0 4.8e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain PhoU PF01895.19 gi|289580178|ref|YP_003478644.1| - 2.3e-19 69.6 8.6 5.1e-17 62.1 1.2 2.6 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|289580178|ref|YP_003478644.1| - 2.3e-10 40.1 0.0 6.3e-10 38.8 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Lactonase PF10282.9 gi|289580179|ref|YP_003478645.1| - 2.8e-12 46.6 0.2 5.4e-05 22.6 0.0 4.0 1 1 0 2 2 2 2 Lactonase, 7-bladed beta-propeller NHL PF01436.21 gi|289580179|ref|YP_003478645.1| - 2.6e-07 30.3 7.2 0.1 12.7 0.0 6.3 8 0 0 8 8 8 2 NHL repeat SGL PF08450.12 gi|289580179|ref|YP_003478645.1| - 2.2e-06 27.4 0.1 0.057 13.0 0.0 3.1 2 1 1 3 3 3 2 SMP-30/Gluconolactonase/LRE-like region Cytochrom_D1 PF02239.16 gi|289580179|ref|YP_003478645.1| - 6.4e-06 24.9 0.1 0.13 10.8 0.0 3.0 1 1 0 2 2 2 2 Cytochrome D1 heme domain SUKH-4 PF14435.6 gi|289580179|ref|YP_003478645.1| - 0.019 15.0 0.9 1.3 9.1 0.1 3.2 2 2 1 3 3 3 0 SUKH-4 immunity protein POLO_box PF00659.18 gi|289580179|ref|YP_003478645.1| - 0.042 14.0 0.0 3.3 8.0 0.0 3.0 3 0 0 3 3 3 0 POLO box duplicated region PQQ_2 PF13360.6 gi|289580179|ref|YP_003478645.1| - 0.12 11.9 0.1 0.45 10.1 0.1 2.1 1 1 0 1 1 1 0 PQQ-like domain NDUF_B12 PF08122.12 gi|289580180|ref|YP_003478646.1| - 0.081 13.0 0.1 0.081 13.0 0.1 2.3 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF3040 PF11239.8 gi|289580180|ref|YP_003478646.1| - 2.1 8.7 6.1 0.43 10.9 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Ribosomal_S8e PF01201.22 gi|289580181|ref|YP_003478647.1| - 1.1e-31 109.9 1.8 1.2e-31 109.7 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PQQ_3 PF13570.6 gi|289580182|ref|YP_003478648.1| - 1.9e-47 158.6 33.4 8.1e-09 35.7 0.1 8.4 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|289580182|ref|YP_003478648.1| - 1e-36 123.1 23.2 8.3e-10 38.1 0.2 7.3 7 1 1 8 8 8 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|289580182|ref|YP_003478648.1| - 5.9e-36 124.2 9.6 1.2e-19 70.9 0.3 3.2 1 1 2 3 3 3 3 PQQ-like domain SUKH-4 PF14435.6 gi|289580182|ref|YP_003478648.1| - 0.019 15.0 3.0 4.1 7.4 0.0 4.3 2 2 1 4 4 4 0 SUKH-4 immunity protein UCR_Fe-S_N PF10399.9 gi|289580182|ref|YP_003478648.1| - 0.89 9.0 3.5 1.8 8.0 3.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|289580182|ref|YP_003478648.1| - 2.5 8.1 8.8 6.8 6.7 8.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PTA_PTB PF01515.19 gi|289580183|ref|YP_003478649.1| - 4.4e-91 305.5 0.0 6.1e-91 305.0 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|289580183|ref|YP_003478649.1| - 3.5e-30 105.1 0.1 7.2e-28 97.6 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|289580183|ref|YP_003478649.1| - 1.3e-20 73.8 0.3 3.5e-20 72.3 0.3 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_31 PF13560.6 gi|289580183|ref|YP_003478649.1| - 0.083 13.3 0.0 0.25 11.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain CTP_transf_like PF01467.26 gi|289580184|ref|YP_003478650.1| - 6.2e-11 42.7 0.0 9.4e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|289580184|ref|YP_003478650.1| - 0.0049 16.8 0.1 0.015 15.2 0.1 2.0 1 1 0 1 1 1 1 FAD synthetase DUF1918 PF08940.11 gi|289580184|ref|YP_003478650.1| - 0.04 13.5 1.1 0.15 11.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) TFIIB PF00382.19 gi|289580185|ref|YP_003478651.1| - 2.7e-05 24.1 0.5 7e-05 22.8 0.5 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|289580185|ref|YP_003478651.1| - 0.02 14.4 0.0 2.4 7.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|289580185|ref|YP_003478651.1| - 0.051 13.4 0.1 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain DisA_N PF02457.16 gi|289580187|ref|YP_003478653.1| - 7.3e-21 73.9 0.0 1.2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.18 gi|289580188|ref|YP_003478654.1| - 1.4e-18 67.2 1.7 1.4e-18 67.2 1.7 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|289580188|ref|YP_003478654.1| - 1e-05 25.4 0.3 1e-05 25.4 0.3 3.4 3 0 0 3 3 3 2 Conserved TM helix AA_permease_2 PF13520.6 gi|289580189|ref|YP_003478655.1| - 7.2e-33 114.0 39.2 1.1e-32 113.4 39.2 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|289580189|ref|YP_003478655.1| - 4.7e-26 91.4 38.4 6e-26 91.1 38.4 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|289580189|ref|YP_003478655.1| - 3.3e-07 29.5 16.7 5.8e-07 28.6 16.7 1.4 1 0 0 1 1 1 1 Spore germination protein DUF373 PF04123.13 gi|289580189|ref|YP_003478655.1| - 0.0023 17.4 5.6 0.0023 17.4 5.6 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF373) PNP_UDP_1 PF01048.20 gi|289580190|ref|YP_003478656.1| - 6.4e-48 163.0 1.6 7.6e-48 162.8 1.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|289580190|ref|YP_003478656.1| - 0.0072 16.2 0.1 0.012 15.4 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase DUF488 PF04343.13 gi|289580191|ref|YP_003478657.1| - 8.3e-08 32.9 0.5 1.8e-07 31.8 0.5 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF488 adh_short_C2 PF13561.6 gi|289580192|ref|YP_003478658.1| - 2.5e-70 236.7 6.6 4.5e-70 235.8 6.6 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580192|ref|YP_003478658.1| - 1.6e-55 187.6 4.6 2.2e-55 187.1 4.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580192|ref|YP_003478658.1| - 7.2e-11 42.3 5.8 3.2e-10 40.2 5.8 1.9 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289580192|ref|YP_003478658.1| - 1.1e-05 25.0 0.4 3.4e-05 23.4 0.2 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|289580192|ref|YP_003478658.1| - 0.0074 15.7 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 2-Hacid_dh_C PF02826.19 gi|289580192|ref|YP_003478658.1| - 0.052 12.9 0.3 0.093 12.1 0.2 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|289580192|ref|YP_003478658.1| - 0.075 12.4 1.7 0.095 12.0 0.3 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.18 gi|289580192|ref|YP_003478658.1| - 0.082 12.8 0.7 0.16 11.8 0.7 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Herpes_capsid PF06112.11 gi|289580192|ref|YP_003478658.1| - 1.5 8.9 5.6 0.63 10.1 2.7 1.8 2 0 0 2 2 2 0 Gammaherpesvirus capsid protein APH PF01636.23 gi|289580193|ref|YP_003478659.1| - 1.3e-19 71.1 2.0 1.9e-19 70.5 2.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family dCMP_cyt_deam_1 PF00383.23 gi|289580194|ref|YP_003478660.1| - 5.6e-16 58.3 0.1 7.5e-16 57.9 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|289580194|ref|YP_003478660.1| - 5.8e-11 42.7 0.2 7.9e-11 42.3 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Pentapeptide PF00805.22 gi|289580194|ref|YP_003478660.1| - 0.051 13.2 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) Fer2_4 PF13510.6 gi|289580194|ref|YP_003478660.1| - 0.055 13.5 0.2 0.11 12.5 0.2 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PGM_PMM_I PF02878.16 gi|289580195|ref|YP_003478661.1| - 6.6e-31 106.9 0.2 1.5e-30 105.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|289580195|ref|YP_003478661.1| - 1.7e-20 73.6 0.2 3.9e-20 72.4 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|289580195|ref|YP_003478661.1| - 1.2e-10 41.4 0.3 5.3e-10 39.3 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|289580195|ref|YP_003478661.1| - 0.0023 18.1 0.1 0.0048 17.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PLDc_N PF13396.6 gi|289580196|ref|YP_003478662.1| - 0.0094 15.9 1.3 0.031 14.2 1.3 2.0 1 1 0 1 1 1 1 Phospholipase_D-nuclease N-terminal SCAMP PF04144.13 gi|289580196|ref|YP_003478662.1| - 0.18 12.1 0.9 3.8 7.8 0.0 2.0 1 1 1 2 2 2 0 SCAMP family DUF4175 PF13779.6 gi|289580196|ref|YP_003478662.1| - 0.33 8.8 0.2 0.38 8.6 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Proteasome PF00227.26 gi|289580197|ref|YP_003478663.1| - 4e-40 137.3 0.0 5.1e-40 137.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|289580198|ref|YP_003478664.1| - 4e-46 156.9 0.1 1.9e-37 128.6 0.0 2.1 2 0 0 2 2 2 2 Proteasome subunit Proteasome_A_N PF10584.9 gi|289580198|ref|YP_003478664.1| - 3.7e-12 45.7 0.1 6.3e-12 44.9 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Serglycin PF04360.12 gi|289580198|ref|YP_003478664.1| - 0.18 11.8 0.2 0.28 11.1 0.2 1.2 1 0 0 1 1 1 0 Serglycin Fungus-induced PF10917.8 gi|289580198|ref|YP_003478664.1| - 0.93 9.9 3.0 2.7 8.4 3.0 1.8 1 0 0 1 1 1 0 Fungus-induced protein Elf1 PF05129.13 gi|289580199|ref|YP_003478665.1| - 0.0019 18.2 2.3 0.041 13.9 0.0 2.5 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|289580199|ref|YP_003478665.1| - 0.005 17.2 4.4 0.019 15.3 0.1 2.6 2 1 0 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.7 gi|289580199|ref|YP_003478665.1| - 0.02 14.9 2.3 2.2 8.4 0.4 2.7 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289580199|ref|YP_003478665.1| - 4.4 7.5 8.1 36 4.6 1.7 3.5 3 1 1 4 4 4 0 Zinc ribbon domain DUF1272 PF06906.11 gi|289580199|ref|YP_003478665.1| - 9 6.5 9.2 3.7 7.7 0.8 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) MoaC PF01967.21 gi|289580200|ref|YP_003478666.1| - 2e-48 163.9 1.0 2.4e-48 163.7 1.0 1.1 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|289580201|ref|YP_003478667.1| - 5.3e-42 144.0 0.7 7.4e-42 143.5 0.7 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|289580201|ref|YP_003478667.1| - 1.3e-39 135.9 0.7 2.9e-39 134.7 0.5 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|289580201|ref|YP_003478667.1| - 1.2e-06 28.1 0.1 2.5e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|289580201|ref|YP_003478667.1| - 2.7e-05 23.7 0.0 5.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family LPD39 PF18858.1 gi|289580202|ref|YP_003478668.1| - 0.038 14.1 0.1 0.056 13.5 0.1 1.2 1 0 0 1 1 1 0 Large polyvalent protein associated domain 39 Acylphosphatase PF00708.18 gi|289580203|ref|YP_003478669.1| - 2.3e-25 88.8 0.1 2.6e-25 88.6 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF3784 PF12650.7 gi|289580204|ref|YP_003478670.1| - 3.2e-11 43.3 0.9 3.9e-11 43.0 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF898 PF05987.13 gi|289580204|ref|YP_003478670.1| - 0.0018 17.4 0.3 0.0023 17.1 0.3 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF898) DUF5336 PF17270.2 gi|289580204|ref|YP_003478670.1| - 0.025 14.2 5.0 0.03 14.0 5.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5336) DUF4131 PF13567.6 gi|289580204|ref|YP_003478670.1| - 0.58 9.8 3.7 1.7 8.3 3.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HhH-GPD PF00730.25 gi|289580206|ref|YP_003478672.1| - 2e-15 57.2 0.0 6.2e-15 55.6 0.0 1.7 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|289580206|ref|YP_003478672.1| - 2.5e-07 30.8 0.0 4.3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain AlkA_N PF06029.11 gi|289580206|ref|YP_003478672.1| - 0.032 14.5 0.2 0.1 12.9 0.1 1.9 2 0 0 2 2 2 0 AlkA N-terminal domain DUF4817 PF16087.5 gi|289580206|ref|YP_003478672.1| - 0.13 12.0 0.1 0.46 10.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) DUF555 PF04475.12 gi|289580207|ref|YP_003478673.1| - 1.9e-37 127.7 0.2 2.6e-37 127.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CNDH2_C PF16858.5 gi|289580207|ref|YP_003478673.1| - 0.036 14.0 6.5 0.041 13.8 6.5 1.1 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term AF-4 PF05110.13 gi|289580207|ref|YP_003478673.1| - 5.3 5.0 7.6 5.8 4.9 7.6 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein SAPS PF04499.15 gi|289580207|ref|YP_003478673.1| - 7.6 5.2 8.5 7.2 5.3 8.5 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein UPF0058 PF01893.16 gi|289580208|ref|YP_003478674.1| - 5.6e-20 71.4 0.0 5.9e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 NinB PF05772.12 gi|289580208|ref|YP_003478674.1| - 0.07 13.0 0.0 0.076 12.8 0.0 1.1 1 0 0 1 1 1 0 NinB protein PhnA_Zn_Ribbon PF08274.12 gi|289580209|ref|YP_003478675.1| - 0.00042 20.2 3.2 0.044 13.7 0.3 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|289580209|ref|YP_003478675.1| - 0.003 17.0 0.7 0.27 10.8 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding Zn_Tnp_IS1 PF03811.13 gi|289580209|ref|YP_003478675.1| - 0.0035 17.1 0.6 0.54 10.0 0.2 2.2 2 0 0 2 2 2 1 InsA N-terminal domain HypA PF01155.19 gi|289580209|ref|YP_003478675.1| - 0.0064 16.5 0.3 0.0067 16.4 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|289580209|ref|YP_003478675.1| - 0.0067 16.3 1.2 0.017 15.1 1.2 1.6 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|289580209|ref|YP_003478675.1| - 0.0091 15.7 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein HalOD2 PF18547.1 gi|289580209|ref|YP_003478675.1| - 0.014 15.3 0.6 0.44 10.5 0.1 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 TFIIS_C PF01096.18 gi|289580209|ref|YP_003478675.1| - 0.021 14.6 1.0 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NMD3 PF04981.13 gi|289580209|ref|YP_003478675.1| - 0.026 14.0 0.2 0.027 14.0 0.2 1.0 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.6 gi|289580209|ref|YP_003478675.1| - 0.03 13.7 1.5 0.61 9.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHY PF05495.12 gi|289580209|ref|YP_003478675.1| - 0.032 14.7 2.6 0.091 13.3 0.4 1.9 1 1 1 2 2 2 0 CHY zinc finger RNHCP PF12647.7 gi|289580209|ref|YP_003478675.1| - 0.032 14.2 0.5 0.039 13.9 0.5 1.2 1 0 0 1 1 1 0 RNHCP domain zinc-ribbons_6 PF07191.12 gi|289580209|ref|YP_003478675.1| - 0.035 14.1 2.1 0.087 12.8 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbons Sgf11 PF08209.11 gi|289580209|ref|YP_003478675.1| - 0.039 13.5 0.9 0.49 10.0 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF4379 PF14311.6 gi|289580209|ref|YP_003478675.1| - 0.042 14.2 0.6 0.06 13.7 0.6 1.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-LITAF-like PF10601.9 gi|289580209|ref|YP_003478675.1| - 0.082 13.2 3.8 3.6 7.9 0.5 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_7 PF02591.15 gi|289580209|ref|YP_003478675.1| - 0.09 13.0 1.1 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF1610 PF07754.11 gi|289580209|ref|YP_003478675.1| - 0.096 12.7 4.7 4.9 7.2 2.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|289580209|ref|YP_003478675.1| - 0.15 12.0 1.1 0.19 11.6 1.1 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|289580209|ref|YP_003478675.1| - 0.16 12.0 4.4 0.35 10.9 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|289580209|ref|YP_003478675.1| - 0.24 10.8 3.6 0.68 9.3 3.5 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.20 gi|289580209|ref|YP_003478675.1| - 0.64 10.1 5.3 0.7 10.0 0.3 2.2 1 1 1 2 2 2 0 Rubredoxin TFIIB PF00382.19 gi|289580210|ref|YP_003478676.1| - 4.6e-38 129.1 0.1 3.9e-19 68.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289580210|ref|YP_003478676.1| - 4e-16 58.3 3.0 8.3e-16 57.2 3.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|289580210|ref|YP_003478676.1| - 0.0003 20.8 0.0 0.0031 17.6 0.0 2.1 2 0 0 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|289580210|ref|YP_003478676.1| - 0.016 15.1 1.4 0.034 14.1 1.1 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|289580210|ref|YP_003478676.1| - 0.022 14.8 0.8 0.036 14.1 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4 PF04545.16 gi|289580210|ref|YP_003478676.1| - 0.035 13.6 4.1 0.1 12.1 0.1 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 YopD PF05844.12 gi|289580210|ref|YP_003478676.1| - 0.083 11.9 0.2 0.15 11.0 0.2 1.3 1 0 0 1 1 1 0 YopD protein RNA_POL_M_15KD PF02150.16 gi|289580210|ref|YP_003478676.1| - 0.15 11.9 0.5 0.29 11.0 0.5 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|289580210|ref|YP_003478676.1| - 0.27 10.7 2.6 0.83 9.2 2.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|289580210|ref|YP_003478676.1| - 0.42 10.6 3.6 1.3 9.0 3.3 2.0 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|289580210|ref|YP_003478676.1| - 0.42 10.8 6.3 2 8.6 1.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|289580210|ref|YP_003478676.1| - 0.49 10.2 3.7 3.1 7.6 3.7 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|289580210|ref|YP_003478676.1| - 0.81 9.3 2.9 12 5.6 0.2 2.5 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger ABC_tran_Xtn PF12848.7 gi|289580210|ref|YP_003478676.1| - 1.1 9.3 6.4 1.1 9.4 0.4 2.9 3 0 0 3 3 3 0 ABC transporter Lactamase_B_3 PF13483.6 gi|289580212|ref|YP_003478678.1| - 3.9e-32 111.4 0.1 6.7e-32 110.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|289580212|ref|YP_003478678.1| - 3.9e-09 36.3 0.5 5.3e-09 35.9 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Nramp PF01566.18 gi|289580213|ref|YP_003478679.1| - 8.1e-12 44.8 16.6 4.3e-11 42.4 16.2 2.2 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein Peptidase_M48 PF01435.18 gi|289580214|ref|YP_003478680.1| - 5.9e-05 22.9 0.0 0.00016 21.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M48 PhoU PF01895.19 gi|289580214|ref|YP_003478680.1| - 0.058 13.9 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 PhoU domain ALC PF17527.2 gi|289580214|ref|YP_003478680.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 Phage ALC protein TMEM40 PF15817.5 gi|289580214|ref|YP_003478680.1| - 3.9 7.2 4.9 23 4.8 0.4 3.1 2 1 1 3 3 3 0 Transmembrane protein 40 family TetR_C_20 PF17925.1 gi|289580215|ref|YP_003478681.1| - 0.064 13.6 0.0 0.077 13.3 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain UbiA PF01040.18 gi|289580216|ref|YP_003478682.1| - 1.6e-10 40.8 30.8 1.6e-10 40.8 30.8 2.1 1 1 1 2 2 2 1 UbiA prenyltransferase family PapJ PF14855.6 gi|289580216|ref|YP_003478682.1| - 0.035 13.8 0.1 0.056 13.1 0.1 1.2 1 0 0 1 1 1 0 Pilus-assembly fibrillin subunit, chaperone TPP_enzyme_N PF02776.18 gi|289580217|ref|YP_003478683.1| - 2.5e-49 167.2 0.0 1e-47 161.9 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289580217|ref|YP_003478683.1| - 4.5e-24 85.0 0.0 1.1e-23 83.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|289580217|ref|YP_003478683.1| - 3.6e-20 72.1 0.1 7e-20 71.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rv2175c_C PF18367.1 gi|289580219|ref|YP_003478685.1| - 0.15 12.1 0.1 0.29 11.3 0.1 1.4 1 0 0 1 1 1 0 Rv2175c C-terminal domain of unknown function Fe-ADH PF00465.19 gi|289580220|ref|YP_003478686.1| - 8.4e-116 386.7 4.4 9.6e-116 386.5 4.4 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|289580220|ref|YP_003478686.1| - 4.1e-17 62.7 2.3 7.5e-09 35.7 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase HD PF01966.22 gi|289580221|ref|YP_003478687.1| - 1.5e-09 38.1 0.6 5.3e-09 36.3 0.2 2.3 2 1 0 2 2 2 1 HD domain UPF0126 PF03458.13 gi|289580222|ref|YP_003478688.1| - 2.3e-31 107.5 32.2 6.6e-18 64.4 10.4 2.8 2 1 1 3 3 3 2 UPF0126 domain FAD-oxidase_C PF02913.19 gi|289580223|ref|YP_003478689.1| - 2.4e-55 187.9 0.0 3.5e-55 187.4 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|289580223|ref|YP_003478689.1| - 1.1e-38 132.1 0.3 1.9e-38 131.4 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Bac_luciferase PF00296.20 gi|289580224|ref|YP_003478690.1| - 1.5e-59 202.0 5.9 1.9e-59 201.6 5.9 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase SnoaL_2 PF12680.7 gi|289580224|ref|YP_003478690.1| - 0.04 14.5 2.0 0.098 13.3 2.0 1.7 1 0 0 1 1 1 0 SnoaL-like domain Nuc_deoxyrib_tr PF05014.15 gi|289580225|ref|YP_003478691.1| - 1.1e-19 70.7 0.0 1.3e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase HTH_10 PF04967.12 gi|289580226|ref|YP_003478692.1| - 5.4e-15 54.9 0.1 8.3e-15 54.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|289580226|ref|YP_003478692.1| - 0.048 13.2 0.1 0.12 11.9 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 CPBP PF02517.16 gi|289580227|ref|YP_003478693.1| - 8.1e-11 42.2 7.7 8.1e-11 42.2 7.7 2.0 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease Aminotran_1_2 PF00155.21 gi|289580228|ref|YP_003478694.1| - 4.8e-63 213.5 0.0 5.4e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|289580228|ref|YP_003478694.1| - 9.2e-14 51.5 0.0 1.4e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|289580228|ref|YP_003478694.1| - 1.1e-09 38.0 0.0 1.8e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|289580228|ref|YP_003478694.1| - 1.1e-06 27.5 0.0 1.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|289580228|ref|YP_003478694.1| - 1.2e-06 27.7 0.0 1.8e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|289580228|ref|YP_003478694.1| - 0.0068 15.1 0.0 0.0095 14.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III TAT_signal PF10518.9 gi|289580229|ref|YP_003478695.1| - 0.055 13.3 3.2 0.11 12.4 3.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2892 PF11127.8 gi|289580230|ref|YP_003478696.1| - 4.2e-16 58.7 4.1 5e-16 58.5 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3185 PF11381.8 gi|289580230|ref|YP_003478696.1| - 0.043 13.8 7.5 0.14 12.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF2244 PF10003.9 gi|289580230|ref|YP_003478696.1| - 0.27 10.9 4.4 0.33 10.6 4.4 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF4730 PF15873.5 gi|289580230|ref|YP_003478696.1| - 0.42 10.9 9.4 0.85 9.9 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4730) ATP1G1_PLM_MAT8 PF02038.16 gi|289580230|ref|YP_003478696.1| - 1.8 8.1 8.8 4.4 6.8 0.6 2.1 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF3040 PF11239.8 gi|289580230|ref|YP_003478696.1| - 2 8.7 11.5 0.38 11.1 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) ADH_zinc_N PF00107.26 gi|289580231|ref|YP_003478697.1| - 7.7e-24 84.1 1.1 1.2e-23 83.5 0.2 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|289580231|ref|YP_003478697.1| - 1.5e-16 60.2 0.1 2.9e-16 59.3 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|289580231|ref|YP_003478697.1| - 4.2e-11 44.0 0.2 1.5e-10 42.2 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase TPP_enzyme_C PF02775.21 gi|289580232|ref|YP_003478698.1| - 1.6e-32 112.4 0.4 2.6e-32 111.7 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|289580232|ref|YP_003478698.1| - 3.1e-18 65.7 0.8 5.9e-18 64.8 0.8 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|289580233|ref|YP_003478699.1| - 2.6e-57 194.2 0.3 3.9e-57 193.7 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|289580233|ref|YP_003478699.1| - 5.6e-41 140.5 0.1 1.5e-40 139.2 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|289580233|ref|YP_003478699.1| - 1.4e-06 28.1 0.1 2.8e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|289580233|ref|YP_003478699.1| - 0.0014 18.9 0.0 0.0031 17.8 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|289580233|ref|YP_003478699.1| - 0.0019 18.1 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain FAD_binding_6 PF00970.24 gi|289580234|ref|YP_003478700.1| - 2.7e-12 46.9 0.0 3.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.25 gi|289580234|ref|YP_003478700.1| - 0.00039 19.9 0.3 0.00055 19.4 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Flagellin_IN PF07196.13 gi|289580234|ref|YP_003478700.1| - 0.2 11.9 1.2 0.47 10.7 0.0 2.2 3 0 0 3 3 3 0 Flagellin hook IN motif HypA PF01155.19 gi|289580235|ref|YP_003478701.1| - 7.9e-05 22.7 0.4 0.00011 22.2 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|289580235|ref|YP_003478701.1| - 0.00023 21.2 2.6 0.00061 19.9 2.6 1.7 1 0 0 1 1 1 1 Zinc ribbon domain DUF35_N PF12172.8 gi|289580235|ref|YP_003478701.1| - 0.00039 20.2 1.9 0.0006 19.6 1.9 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|289580235|ref|YP_003478701.1| - 0.0008 19.4 0.6 0.0012 18.9 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|289580235|ref|YP_003478701.1| - 0.0021 17.9 1.5 0.0032 17.3 1.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) ADK_lid PF05191.14 gi|289580235|ref|YP_003478701.1| - 0.006 16.5 1.2 0.011 15.8 1.2 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid Ribosomal_L37e PF01907.19 gi|289580235|ref|YP_003478701.1| - 0.0084 16.3 0.9 0.012 15.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zinc_ribbon_15 PF17032.5 gi|289580235|ref|YP_003478701.1| - 0.01 16.6 0.8 0.015 16.0 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|289580235|ref|YP_003478701.1| - 0.013 14.9 0.9 0.36 10.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2072 PF09845.9 gi|289580235|ref|YP_003478701.1| - 0.014 15.7 0.9 0.02 15.2 0.9 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein Rubredoxin_2 PF18073.1 gi|289580235|ref|YP_003478701.1| - 0.021 14.5 4.1 0.031 14.0 4.1 1.2 1 0 0 1 1 1 0 Rubredoxin metal binding domain zinc-ribbons_6 PF07191.12 gi|289580235|ref|YP_003478701.1| - 0.03 14.3 1.3 0.042 13.8 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|289580235|ref|YP_003478701.1| - 0.035 13.6 0.3 3.1 7.4 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 gi|289580235|ref|YP_003478701.1| - 0.036 14.1 0.2 0.057 13.4 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon TackOD1 PF18551.1 gi|289580235|ref|YP_003478701.1| - 0.04 13.6 0.3 0.056 13.1 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF5318 PF17249.2 gi|289580235|ref|YP_003478701.1| - 0.098 12.4 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5318) zinc_ribbon_9 PF14369.6 gi|289580235|ref|YP_003478701.1| - 0.11 12.7 2.3 6.6 7.1 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon FYDLN_acid PF09538.10 gi|289580235|ref|YP_003478701.1| - 0.24 12.1 14.9 0.047 14.4 11.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-C3HC4_2 PF13923.6 gi|289580235|ref|YP_003478701.1| - 0.29 11.0 3.0 0.44 10.4 3.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.6 gi|289580235|ref|YP_003478701.1| - 0.33 11.0 5.0 4.1 7.5 0.8 2.8 2 1 1 3 3 3 0 YhfH-like protein NRDD PF13597.6 gi|289580235|ref|YP_003478701.1| - 0.35 9.6 0.9 0.46 9.2 0.9 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_2 PF13240.6 gi|289580235|ref|YP_003478701.1| - 0.6 9.9 4.6 4.5 7.1 4.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PGF-CTERM PF18204.1 gi|289580236|ref|YP_003478702.1| - 6.4e-06 26.0 1.5 1.6e-05 24.7 1.5 1.7 1 0 0 1 1 1 1 PGF-CTERM motif YceI PF04264.13 gi|289580236|ref|YP_003478702.1| - 0.037 14.6 3.0 0.081 13.5 0.5 2.7 2 2 0 2 2 2 0 YceI-like domain CSD PF00313.22 gi|289580237|ref|YP_003478703.1| - 4.6e-20 71.2 0.1 5.1e-20 71.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|289580237|ref|YP_003478703.1| - 0.046 13.4 2.5 0.06 13.0 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|289580237|ref|YP_003478703.1| - 0.13 12.2 0.7 0.17 11.9 0.7 1.4 1 1 0 1 1 1 0 S1-like Glyoxalase_4 PF13669.6 gi|289580238|ref|YP_003478704.1| - 2.8e-16 59.8 0.0 3.2e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|289580238|ref|YP_003478704.1| - 7.9e-13 48.7 0.1 9e-13 48.5 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|289580238|ref|YP_003478704.1| - 1.4e-05 25.3 0.3 1.5e-05 25.1 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|289580238|ref|YP_003478704.1| - 0.039 14.7 0.0 0.055 14.3 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain EDS1_EP PF18117.1 gi|289580238|ref|YP_003478704.1| - 0.055 13.9 0.0 0.07 13.6 0.0 1.2 1 0 0 1 1 1 0 Enhanced disease susceptibility 1 protein EP domain Aldo_ket_red PF00248.21 gi|289580239|ref|YP_003478705.1| - 5e-60 203.2 0.0 8.7e-58 195.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family TAT_signal PF10518.9 gi|289580240|ref|YP_003478706.1| - 0.002 17.9 2.2 0.003 17.3 2.2 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|289580240|ref|YP_003478706.1| - 0.0084 15.4 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MM_CoA_mutase PF01642.22 gi|289580241|ref|YP_003478707.1| - 3.5e-227 755.0 0.8 4.4e-227 754.7 0.8 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Acetyltransf_1 PF00583.25 gi|289580243|ref|YP_003478709.1| - 1.5e-07 31.6 0.0 2.5e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|289580243|ref|YP_003478709.1| - 0.00063 19.8 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.7 gi|289580243|ref|YP_003478709.1| - 0.0017 18.3 0.0 0.018 15.0 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289580243|ref|YP_003478709.1| - 0.0053 17.2 0.2 0.01 16.2 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289580243|ref|YP_003478709.1| - 0.072 13.2 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF4164 PF13747.6 gi|289580243|ref|YP_003478709.1| - 0.11 12.8 1.5 0.24 11.7 1.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) Peptidase_S9 PF00326.21 gi|289580244|ref|YP_003478710.1| - 9.9e-43 146.1 0.1 1.4e-42 145.6 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|289580244|ref|YP_003478710.1| - 2.9e-13 49.4 0.6 0.0083 16.0 0.0 4.9 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|289580244|ref|YP_003478710.1| - 2.6e-06 26.5 0.0 0.034 13.0 0.1 3.1 2 1 1 3 3 3 2 Prolyl oligopeptidase, N-terminal beta-propeller domain DPPIV_N PF00930.21 gi|289580244|ref|YP_003478710.1| - 3.4e-05 22.8 0.0 0.21 10.3 0.0 2.6 1 1 1 2 2 2 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S15 PF02129.18 gi|289580244|ref|YP_003478710.1| - 3.4e-05 23.6 0.3 0.17 11.5 0.0 2.5 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S28 PF05577.12 gi|289580244|ref|YP_003478710.1| - 0.00017 20.6 0.1 0.00025 19.9 0.1 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Hydrolase_4 PF12146.8 gi|289580244|ref|YP_003478710.1| - 0.00045 19.6 0.0 0.29 10.3 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Kelch_4 PF13418.6 gi|289580244|ref|YP_003478710.1| - 0.0036 17.3 0.0 7.7 6.6 0.0 3.5 4 0 0 4 4 3 1 Galactose oxidase, central domain Pectate_lyase22 PF14583.6 gi|289580244|ref|YP_003478710.1| - 0.0041 15.8 0.2 0.075 11.7 0.1 2.5 2 1 1 3 3 3 1 Oligogalacturonate lyase DLH PF01738.18 gi|289580244|ref|YP_003478710.1| - 0.0053 16.3 0.0 0.013 15.1 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|289580244|ref|YP_003478710.1| - 0.014 15.0 0.0 2.8 7.5 0.1 2.3 1 1 0 2 2 2 0 alpha/beta hydrolase fold Kelch_6 PF13964.6 gi|289580244|ref|YP_003478710.1| - 0.063 13.6 0.0 58 4.2 0.0 3.8 5 0 0 5 5 4 0 Kelch motif AXE1 PF05448.12 gi|289580244|ref|YP_003478710.1| - 0.11 11.1 0.0 1.2 7.8 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Tannase PF07519.11 gi|289580244|ref|YP_003478710.1| - 0.14 11.1 0.3 2.4 7.0 0.3 2.1 1 1 0 2 2 2 0 Tannase and feruloyl esterase Abhydrolase_4 PF08386.10 gi|289580244|ref|YP_003478710.1| - 0.18 11.9 0.0 0.67 10.1 0.0 1.9 2 0 0 2 2 1 0 TAP-like protein ASRT PF07100.11 gi|289580247|ref|YP_003478713.1| - 3e-56 188.6 0.0 3.3e-56 188.5 0.0 1.0 1 0 0 1 1 1 1 Anabaena sensory rhodopsin transducer AFOR_C PF01314.18 gi|289580248|ref|YP_003478714.1| - 6.7e-73 245.9 1.8 1.2e-72 245.0 1.8 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|289580248|ref|YP_003478714.1| - 9.4e-55 185.6 0.0 1.9e-54 184.5 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain MFS_1 PF07690.16 gi|289580249|ref|YP_003478715.1| - 3.1e-36 125.0 62.7 5e-34 117.8 28.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|289580249|ref|YP_003478715.1| - 0.00016 20.7 7.4 0.00016 20.7 7.4 2.7 2 2 1 4 4 4 1 MFS_1 like family ThiS PF02597.20 gi|289580250|ref|YP_003478716.1| - 3.4e-11 43.6 0.1 3.8e-11 43.5 0.1 1.0 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.14 gi|289580250|ref|YP_003478716.1| - 0.0051 16.5 0.1 0.01 15.6 0.1 1.6 1 0 0 1 1 1 1 G5-linked-Ubiquitin-like domain Lambda_tail_I PF06805.12 gi|289580250|ref|YP_003478716.1| - 0.067 13.5 0.0 0.089 13.1 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Pyr_redox_2 PF07992.14 gi|289580251|ref|YP_003478717.1| - 1.3e-20 73.8 2.2 4.1e-12 45.9 1.0 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289580251|ref|YP_003478717.1| - 5.6e-15 55.4 1.4 6e-09 35.6 0.0 3.1 1 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289580251|ref|YP_003478717.1| - 2.8e-11 42.8 0.0 2.6e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|289580251|ref|YP_003478717.1| - 1e-09 38.5 2.1 0.00016 21.4 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289580251|ref|YP_003478717.1| - 2.3e-07 30.3 0.5 7.4e-06 25.3 0.0 2.7 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|289580251|ref|YP_003478717.1| - 1.1e-06 28.2 0.9 1.9e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|289580251|ref|YP_003478717.1| - 1.6e-06 27.5 0.6 2.4e-05 23.6 0.0 2.6 2 1 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|289580251|ref|YP_003478717.1| - 8.4e-06 25.9 0.1 0.02 14.9 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|289580251|ref|YP_003478717.1| - 2.1e-05 24.7 0.0 7.6e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|289580251|ref|YP_003478717.1| - 5.6e-05 22.5 0.1 0.00014 21.2 0.0 1.7 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|289580251|ref|YP_003478717.1| - 5.6e-05 22.7 1.5 0.00018 21.0 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|289580251|ref|YP_003478717.1| - 0.00014 22.3 0.1 0.0087 16.6 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|289580251|ref|YP_003478717.1| - 0.00041 19.8 0.0 0.00057 19.3 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|289580251|ref|YP_003478717.1| - 0.0024 17.1 0.0 1.6 7.8 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|289580251|ref|YP_003478717.1| - 0.0078 15.3 0.1 0.016 14.3 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|289580251|ref|YP_003478717.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|289580251|ref|YP_003478717.1| - 0.031 13.2 0.6 0.87 8.4 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase AdoHcyase_NAD PF00670.21 gi|289580251|ref|YP_003478717.1| - 0.065 13.3 0.1 0.095 12.8 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMP-binding PF00501.28 gi|289580252|ref|YP_003478718.1| - 6e-06 25.1 0.0 0.0093 14.6 0.1 2.1 2 0 0 2 2 2 2 AMP-binding enzyme DnaJ_C PF01556.18 gi|289580253|ref|YP_003478719.1| - 8.2e-43 146.0 0.0 1.1e-42 145.6 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|289580253|ref|YP_003478719.1| - 9.1e-25 86.6 4.1 1.8e-24 85.6 4.1 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|289580253|ref|YP_003478719.1| - 1.1e-12 48.1 17.3 2.3e-12 47.1 17.3 1.6 1 0 0 1 1 1 1 DnaJ central domain DZR PF12773.7 gi|289580253|ref|YP_003478719.1| - 0.0084 16.1 11.8 0.026 14.5 11.9 1.7 1 1 0 1 1 1 1 Double zinc ribbon Anti-TRAP PF15777.5 gi|289580253|ref|YP_003478719.1| - 0.05 13.6 16.2 0.41 10.6 3.3 2.6 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5351 PF17302.2 gi|289580253|ref|YP_003478719.1| - 0.084 13.1 25.7 0.3 11.3 1.2 4.4 4 0 0 4 4 4 0 Family of unknown function (DUF5351) DUF2318 PF10080.9 gi|289580253|ref|YP_003478719.1| - 0.64 10.2 5.6 8.5 6.6 0.5 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) TackOD1 PF18551.1 gi|289580253|ref|YP_003478719.1| - 1.2 8.8 7.3 0.24 11.0 1.3 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 HypA PF01155.19 gi|289580253|ref|YP_003478719.1| - 6.2 6.9 12.2 9.6 6.3 2.5 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HSP70 PF00012.20 gi|289580254|ref|YP_003478720.1| - 7.4e-243 807.1 17.0 1.2e-240 799.9 17.0 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|289580254|ref|YP_003478720.1| - 3.5e-19 68.8 0.3 3.5e-19 68.8 0.3 2.2 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|289580254|ref|YP_003478720.1| - 0.0023 17.2 0.0 0.0055 16.0 0.0 1.6 1 0 0 1 1 1 1 StbA protein PapD_N PF00345.20 gi|289580254|ref|YP_003478720.1| - 0.1 12.5 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain IFT57 PF10498.9 gi|289580254|ref|YP_003478720.1| - 0.14 11.1 7.9 0.059 12.3 5.3 1.6 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 PhyH PF05721.13 gi|289580254|ref|YP_003478720.1| - 0.42 10.8 1.9 1.2 9.4 0.9 2.1 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) Pox_G7 PF05503.12 gi|289580254|ref|YP_003478720.1| - 0.73 8.7 3.2 1.3 7.9 3.2 1.3 1 0 0 1 1 1 0 Poxvirus G7-like DegS PF05384.11 gi|289580254|ref|YP_003478720.1| - 0.83 9.1 12.8 0.017 14.6 2.3 2.7 2 1 1 3 3 3 0 Sensor protein DegS DUF3829 PF12889.7 gi|289580254|ref|YP_003478720.1| - 1.9 7.9 9.2 3.8 6.9 9.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) PQQ_2 PF13360.6 gi|289580255|ref|YP_003478721.1| - 1.4e-25 90.3 11.1 1.2e-14 54.4 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289580255|ref|YP_003478721.1| - 1.9e-09 37.7 17.9 0.018 15.5 0.0 6.6 6 1 0 6 6 6 4 PQQ-like domain PQQ PF01011.21 gi|289580255|ref|YP_003478721.1| - 1.9e-08 33.8 2.9 0.36 10.8 0.0 5.5 5 0 0 5 5 5 3 PQQ enzyme repeat zf-FPG_IleRS PF06827.14 gi|289580256|ref|YP_003478722.1| - 0.02 14.7 1.5 0.039 13.8 1.5 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.6 gi|289580256|ref|YP_003478722.1| - 0.02 15.2 0.2 0.033 14.6 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar FAD_binding_7 PF03441.14 gi|289580258|ref|YP_003478724.1| - 4.6e-79 264.6 1.9 6.3e-79 264.1 1.9 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|289580258|ref|YP_003478724.1| - 1.1e-46 158.8 0.0 2.6e-46 157.6 0.0 1.6 1 0 0 1 1 1 1 DNA photolyase HAD PF12710.7 gi|289580258|ref|YP_003478724.1| - 0.0071 16.8 0.0 0.042 14.3 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Aldedh PF00171.22 gi|289580259|ref|YP_003478725.1| - 0.029 12.9 0.0 0.062 11.8 0.0 1.5 1 1 0 1 1 1 0 Aldehyde dehydrogenase family ABC_tran PF00005.27 gi|289580261|ref|YP_003478727.1| - 3.2e-29 102.2 0.0 7.3e-29 101.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|289580261|ref|YP_003478727.1| - 6.8e-17 61.7 0.1 1.4e-16 60.7 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|289580261|ref|YP_003478727.1| - 2.5e-06 27.8 0.0 1.8e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289580261|ref|YP_003478727.1| - 5.9e-06 26.8 0.5 1.4e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|289580261|ref|YP_003478727.1| - 1.4e-05 25.1 0.4 0.035 13.9 0.1 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289580261|ref|YP_003478727.1| - 0.0077 15.7 0.0 0.42 10.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|289580261|ref|YP_003478727.1| - 0.031 14.7 0.0 0.28 11.6 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|289580261|ref|YP_003478727.1| - 0.051 13.5 0.2 0.59 10.0 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_5 PF07728.14 gi|289580261|ref|YP_003478727.1| - 0.077 13.0 0.0 0.39 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|289580261|ref|YP_003478727.1| - 0.082 13.0 0.0 0.54 10.4 0.0 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|289580261|ref|YP_003478727.1| - 0.13 10.9 0.1 0.79 8.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|289580262|ref|YP_003478728.1| - 5.8e-29 101.3 0.0 8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289580262|ref|YP_003478728.1| - 2.7e-20 72.7 0.1 4.6e-20 71.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289580262|ref|YP_003478728.1| - 8.4e-05 22.5 0.5 0.00026 20.9 0.0 1.8 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2075 PF09848.9 gi|289580262|ref|YP_003478728.1| - 0.0037 16.6 0.0 0.0056 16.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|289580262|ref|YP_003478728.1| - 0.018 15.3 0.6 0.18 12.0 0.6 2.2 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|289580262|ref|YP_003478728.1| - 0.052 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 gi|289580263|ref|YP_003478729.1| - 8.9e-32 110.3 9.6 8.9e-32 110.3 9.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289580263|ref|YP_003478729.1| - 0.0061 16.5 0.0 0.0061 16.5 0.0 3.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|289580264|ref|YP_003478730.1| - 5.8e-41 140.3 10.3 1.1e-40 139.4 10.3 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|289580265|ref|YP_003478731.1| - 1.8e-45 155.5 0.3 2.6e-45 155.0 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SH3_1 PF00018.28 gi|289580265|ref|YP_003478731.1| - 0.15 11.7 1.1 0.68 9.6 0.0 2.6 2 0 0 2 2 2 0 SH3 domain PAS_3 PF08447.12 gi|289580268|ref|YP_003478734.1| - 2.8e-15 56.4 0.0 4.4e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 PAS fold HalOD1 PF18545.1 gi|289580268|ref|YP_003478734.1| - 4.8e-12 46.0 0.4 9.2e-12 45.1 0.4 1.5 1 0 0 1 1 1 1 Halobacterial output domain 1 PAS_9 PF13426.7 gi|289580268|ref|YP_003478734.1| - 0.00011 22.4 0.0 0.00017 21.8 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|289580268|ref|YP_003478734.1| - 0.0014 18.9 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_11 PF14598.6 gi|289580268|ref|YP_003478734.1| - 0.035 14.2 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 PAS domain Arrestin_C PF02752.22 gi|289580269|ref|YP_003478735.1| - 0.0053 17.2 0.0 0.24 11.8 0.0 2.2 2 0 0 2 2 2 2 Arrestin (or S-antigen), C-terminal domain RNA_binding PF01877.17 gi|289580270|ref|YP_003478736.1| - 9.7e-34 116.2 0.1 9.7e-34 116.2 0.1 1.4 2 0 0 2 2 2 1 RNA binding V_ATPase_I_N PF18670.1 gi|289580270|ref|YP_003478736.1| - 0.02 15.3 1.2 0.031 14.7 0.1 1.8 2 0 0 2 2 2 0 V-type ATPase subunit I, N-terminal domain TetR_C_6 PF13977.6 gi|289580270|ref|YP_003478736.1| - 0.068 13.4 2.6 0.099 12.9 2.6 1.3 1 1 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal LBR_tudor PF09465.10 gi|289580271|ref|YP_003478737.1| - 0.012 15.4 0.3 0.025 14.4 0.1 1.7 2 0 0 2 2 2 0 Lamin-B receptor of TUDOR domain SH3_13 PF18335.1 gi|289580271|ref|YP_003478737.1| - 0.017 14.9 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 ATP-dependent RecD-like DNA helicase SH3 domain LptF_LptG PF03739.14 gi|289580272|ref|YP_003478738.1| - 0.37 9.6 2.1 0.43 9.4 2.1 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG AstE_AspA PF04952.14 gi|289580273|ref|YP_003478739.1| - 2.2e-12 46.7 0.0 3.6e-12 46.0 0.0 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|289580273|ref|YP_003478739.1| - 0.00077 19.0 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DJ-1_PfpI PF01965.24 gi|289580275|ref|YP_003478741.1| - 1.4e-15 57.5 0.2 5.2e-14 52.4 0.2 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|289580275|ref|YP_003478741.1| - 6.1e-08 32.6 0.0 3.1e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 ThiJ/PfpI family-like ThuA PF06283.11 gi|289580275|ref|YP_003478741.1| - 0.013 15.7 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation GATase_3 PF07685.14 gi|289580275|ref|YP_003478741.1| - 0.049 13.2 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HSP20 PF00011.21 gi|289580276|ref|YP_003478742.1| - 1.6e-24 86.0 0.1 3e-24 85.1 0.1 1.5 2 0 0 2 2 2 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|289580276|ref|YP_003478742.1| - 7.4e-13 47.8 0.0 1.3e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DHHA1 PF02272.19 gi|289580277|ref|YP_003478743.1| - 2.1e-12 47.6 0.2 3.7e-12 46.8 0.2 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|289580277|ref|YP_003478743.1| - 8.8e-12 45.2 1.6 2.3e-11 43.8 0.2 2.0 2 0 0 2 2 2 1 DHH family Thiolase_N PF00108.23 gi|289580278|ref|YP_003478744.1| - 4.5e-22 78.7 0.3 1.4e-21 77.0 0.3 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289580278|ref|YP_003478744.1| - 2.7e-08 33.5 0.1 7.2e-08 32.1 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289580278|ref|YP_003478744.1| - 1.4e-06 28.0 0.8 3e-06 27.0 0.8 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|289580278|ref|YP_003478744.1| - 0.027 14.3 1.3 0.59 10.0 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.8 gi|289580279|ref|YP_003478745.1| - 2.5e-08 33.6 2.7 5.2e-08 32.6 2.7 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.10 gi|289580279|ref|YP_003478745.1| - 0.00022 21.3 0.6 0.00077 19.6 0.5 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OB_aCoA_assoc PF01796.17 gi|289580279|ref|YP_003478745.1| - 0.0077 16.2 0.2 0.024 14.6 0.2 2.0 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|289580279|ref|YP_003478745.1| - 0.048 13.7 0.2 0.086 12.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|289580279|ref|YP_003478745.1| - 1.2 8.7 4.3 2.9 7.4 4.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|289580279|ref|YP_003478745.1| - 2.6 7.8 4.9 4.6 7.1 0.6 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain DUF4397 PF14344.6 gi|289580280|ref|YP_003478746.1| - 9.6e-42 142.6 3.2 2.3e-20 73.6 0.3 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|289580280|ref|YP_003478746.1| - 6.5e-05 22.8 0.1 0.0027 17.5 0.1 2.2 1 1 0 2 2 2 1 Alginate O-acetyl transferase AlgF Y_Y_Y PF07495.13 gi|289580280|ref|YP_003478746.1| - 0.0063 16.5 0.0 2 8.4 0.0 2.3 2 0 0 2 2 2 2 Y_Y_Y domain CarboxypepD_reg PF13620.6 gi|289580280|ref|YP_003478746.1| - 0.036 14.3 0.2 3.2 8.1 0.1 2.6 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF4493 PF14900.6 gi|289580280|ref|YP_003478746.1| - 0.078 12.8 0.1 2.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4493) DUF4399 PF14347.6 gi|289580280|ref|YP_003478746.1| - 0.13 12.7 0.0 4 7.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4399) PetG PF02529.15 gi|289580281|ref|YP_003478747.1| - 0.028 14.3 2.7 0.047 13.5 2.5 1.5 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 DUF5392 PF17370.2 gi|289580281|ref|YP_003478747.1| - 0.067 13.3 0.4 0.068 13.2 0.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5392) DUF3054 PF11255.8 gi|289580282|ref|YP_003478748.1| - 2e-20 73.3 6.3 2.4e-20 73.1 6.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) TM_helix PF05552.12 gi|289580282|ref|YP_003478748.1| - 2.2 8.3 6.5 7.3 6.7 0.1 2.6 2 0 0 2 2 2 0 Conserved TM helix TIR_2 PF13676.6 gi|289580283|ref|YP_003478749.1| - 2.3e-10 41.1 0.0 3.2e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 TIR domain DUF1863 PF08937.11 gi|289580283|ref|YP_003478749.1| - 6e-05 23.4 0.0 0.0001 22.6 0.0 1.5 1 1 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) Nuc_deoxyrib_tr PF05014.15 gi|289580283|ref|YP_003478749.1| - 0.00038 20.5 0.0 0.00055 20.0 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Elf1 PF05129.13 gi|289580283|ref|YP_003478749.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TIR PF01582.20 gi|289580283|ref|YP_003478749.1| - 0.2 11.5 0.0 0.31 10.8 0.0 1.2 1 0 0 1 1 1 0 TIR domain TIM PF00121.18 gi|289580285|ref|YP_003478751.1| - 1.4e-07 31.1 0.1 4.7e-07 29.4 0.0 1.7 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|289580285|ref|YP_003478751.1| - 4.5e-05 22.9 2.2 4.5e-05 22.9 2.2 1.9 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|289580285|ref|YP_003478751.1| - 0.0059 15.8 0.1 0.023 13.8 0.1 1.8 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|289580285|ref|YP_003478751.1| - 0.0097 15.0 1.9 0.0097 15.0 1.9 2.0 1 1 1 2 2 2 1 FMN-dependent dehydrogenase Hydrolase_like PF13242.6 gi|289580285|ref|YP_003478751.1| - 0.041 14.0 2.5 0.29 11.2 0.2 2.6 2 0 0 2 2 2 0 HAD-hyrolase-like Glu_synthase PF01645.17 gi|289580285|ref|YP_003478751.1| - 0.37 9.9 5.0 0.72 8.9 0.4 2.0 1 1 1 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.15 gi|289580285|ref|YP_003478751.1| - 2.1 7.7 13.6 1.1 8.6 7.3 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase HTH_3 PF01381.22 gi|289580286|ref|YP_003478752.1| - 2.8e-09 36.9 0.3 3.8e-09 36.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|289580286|ref|YP_003478752.1| - 7.1e-08 32.4 0.3 1.1e-07 31.8 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|289580286|ref|YP_003478752.1| - 4.4e-07 30.2 0.0 7.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|289580286|ref|YP_003478752.1| - 0.00012 21.8 0.1 0.0002 21.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PI3K_1B_p101 PF10486.9 gi|289580286|ref|YP_003478752.1| - 0.028 12.2 10.1 1.6 6.4 0.0 2.0 2 0 0 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit NOA36 PF06524.12 gi|289580286|ref|YP_003478752.1| - 0.034 13.5 3.9 0.041 13.2 3.9 1.1 1 0 0 1 1 1 0 NOA36 protein HTH_37 PF13744.6 gi|289580286|ref|YP_003478752.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Macoilin PF09726.9 gi|289580286|ref|YP_003478752.1| - 0.52 8.8 8.7 0.55 8.7 8.7 1.1 1 0 0 1 1 1 0 Macoilin family MAP70 PF07058.11 gi|289580286|ref|YP_003478752.1| - 2.8 6.6 5.4 2.9 6.5 5.4 1.1 1 0 0 1 1 1 0 Microtubule-associated protein 70 Apt1 PF10351.9 gi|289580286|ref|YP_003478752.1| - 5 5.9 10.5 5.5 5.7 10.5 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain ICAP-1_inte_bdg PF10480.9 gi|289580286|ref|YP_003478752.1| - 7.7 6.4 13.8 13 5.7 13.8 1.4 1 0 0 1 1 1 0 Beta-1 integrin binding protein CDP-OH_P_transf PF01066.21 gi|289580287|ref|YP_003478753.1| - 9.4e-07 29.5 0.8 9.4e-07 29.5 0.8 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|289580288|ref|YP_003478754.1| - 8.2e-31 107.2 0.3 1.3e-30 106.6 0.1 1.4 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.6 gi|289580288|ref|YP_003478754.1| - 1.8e-05 25.1 2.2 3.9e-05 24.1 1.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|289580288|ref|YP_003478754.1| - 3.3e-05 24.1 0.1 0.22 11.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|289580288|ref|YP_003478754.1| - 0.00026 21.3 4.6 0.0012 19.1 4.6 2.1 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|289580288|ref|YP_003478754.1| - 0.00087 19.8 0.0 0.0021 18.6 0.0 1.7 1 1 0 2 2 2 1 ABC transporter dNK PF01712.19 gi|289580288|ref|YP_003478754.1| - 0.0012 18.7 0.0 0.58 10.0 0.0 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|289580288|ref|YP_003478754.1| - 0.0018 18.5 0.1 0.0032 17.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|289580288|ref|YP_003478754.1| - 0.005 16.5 0.2 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|289580288|ref|YP_003478754.1| - 0.0059 17.0 3.9 0.023 15.1 3.9 1.8 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|289580288|ref|YP_003478754.1| - 0.0078 16.1 0.1 0.019 14.9 0.1 1.7 1 0 0 1 1 1 1 NTPase PRK PF00485.18 gi|289580288|ref|YP_003478754.1| - 0.0089 15.8 0.4 0.49 10.1 0.0 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|289580288|ref|YP_003478754.1| - 0.012 16.0 0.0 0.044 14.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|289580288|ref|YP_003478754.1| - 0.016 14.2 0.1 0.034 13.1 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|289580288|ref|YP_003478754.1| - 0.019 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|289580288|ref|YP_003478754.1| - 0.022 15.1 0.2 0.063 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain GvpD PF07088.11 gi|289580288|ref|YP_003478754.1| - 0.035 12.7 0.1 0.042 12.5 0.1 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_24 PF13479.6 gi|289580288|ref|YP_003478754.1| - 0.051 13.3 0.0 0.093 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|289580288|ref|YP_003478754.1| - 0.058 13.5 0.1 9 6.4 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase DUF87 PF01935.17 gi|289580288|ref|YP_003478754.1| - 0.076 13.1 0.1 0.48 10.5 0.0 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|289580288|ref|YP_003478754.1| - 0.095 12.4 2.2 0.16 11.7 2.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|289580288|ref|YP_003478754.1| - 0.11 12.1 7.3 1.7 8.2 3.4 2.8 1 1 1 2 2 2 0 AAA domain KTI12 PF08433.10 gi|289580288|ref|YP_003478754.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|289580288|ref|YP_003478754.1| - 0.12 12.3 0.0 0.21 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|289580288|ref|YP_003478754.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Aminotran_1_2 PF00155.21 gi|289580289|ref|YP_003478755.1| - 1.1e-63 215.7 0.0 1.2e-63 215.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|289580289|ref|YP_003478755.1| - 2.7e-05 22.9 0.0 0.00012 20.8 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|289580289|ref|YP_003478755.1| - 0.011 14.6 0.0 0.026 13.4 0.0 1.6 1 1 0 1 1 1 0 Allinase HTH_38 PF13936.6 gi|289580289|ref|YP_003478755.1| - 0.032 14.0 0.0 0.08 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DNA_ligase_A_M PF01068.21 gi|289580290|ref|YP_003478756.1| - 1.1e-43 149.3 0.0 2.3e-43 148.2 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|289580290|ref|YP_003478756.1| - 1.1e-35 123.5 0.0 6.1e-34 117.8 0.0 2.9 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|289580290|ref|YP_003478756.1| - 8.4e-18 64.8 0.0 1.9e-17 63.7 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region PQQ_3 PF13570.6 gi|289580291|ref|YP_003478757.1| - 8.7e-74 242.4 29.1 1.6e-13 50.7 0.9 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|289580291|ref|YP_003478757.1| - 4.2e-59 193.8 18.4 1.3e-10 40.7 0.2 8.6 9 0 0 9 9 9 6 PQQ enzyme repeat PQQ_2 PF13360.6 gi|289580291|ref|YP_003478757.1| - 1.9e-51 175.0 11.7 4e-21 75.7 2.8 4.0 1 1 3 4 4 4 4 PQQ-like domain DUF5050 PF16472.5 gi|289580291|ref|YP_003478757.1| - 0.0012 18.2 0.0 0.01 15.1 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5050) WD40_like PF17005.5 gi|289580291|ref|YP_003478757.1| - 0.0091 15.3 0.6 2.9 7.1 0.0 3.2 2 1 0 3 3 3 1 WD40-like domain DUF1150 PF06620.11 gi|289580291|ref|YP_003478757.1| - 0.035 14.2 0.1 23 5.2 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1150) Tachylectin PF14517.6 gi|289580291|ref|YP_003478757.1| - 0.059 12.9 3.1 0.14 11.7 1.6 2.3 2 1 1 3 3 3 0 Tachylectin DUF1348 PF07080.11 gi|289580291|ref|YP_003478757.1| - 0.28 11.1 1.4 29 4.6 0.0 3.7 3 1 2 5 5 5 0 Protein of unknown function (DUF1348) GCS PF03074.16 gi|289580293|ref|YP_003478759.1| - 0.16 11.3 0.0 0.67 9.3 0.0 1.9 1 1 0 1 1 1 0 Glutamate-cysteine ligase Glyco_hydro_66 PF13199.6 gi|289580293|ref|YP_003478759.1| - 0.17 10.5 0.0 0.27 9.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 Aldo_ket_red PF00248.21 gi|289580294|ref|YP_003478760.1| - 5.7e-48 163.6 0.0 1.5e-45 155.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family UPF0052 PF01933.18 gi|289580295|ref|YP_003478761.1| - 3.8e-46 157.7 0.0 5.3e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|289580296|ref|YP_003478762.1| - 1e-05 24.8 0.5 5.9e-05 22.3 0.5 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|289580296|ref|YP_003478762.1| - 0.00034 20.1 0.1 0.00057 19.4 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DUF1633 PF07794.11 gi|289580296|ref|YP_003478762.1| - 0.0043 15.3 0.8 0.0048 15.2 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1633) NMO PF03060.15 gi|289580296|ref|YP_003478762.1| - 0.01 15.2 0.5 0.013 15.0 0.5 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase PcrB PF01884.17 gi|289580296|ref|YP_003478762.1| - 0.019 14.4 0.1 0.028 13.9 0.1 1.3 1 0 0 1 1 1 0 PcrB family G3P_antiterm PF04309.12 gi|289580296|ref|YP_003478762.1| - 0.027 13.9 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|289580296|ref|YP_003478762.1| - 0.034 13.3 0.0 0.064 12.4 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Radical_SAM PF04055.21 gi|289580296|ref|YP_003478762.1| - 0.078 13.3 0.1 0.51 10.7 0.1 2.3 1 1 0 2 2 2 0 Radical SAM superfamily QRPTase_C PF01729.19 gi|289580296|ref|YP_003478762.1| - 0.085 12.6 0.2 0.13 12.1 0.2 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Prok-RING_1 PF14446.6 gi|289580298|ref|YP_003478764.1| - 0.0044 16.9 0.8 0.0048 16.8 0.8 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|289580298|ref|YP_003478764.1| - 0.009 16.1 3.3 1.1 9.4 0.3 2.1 1 1 1 2 2 2 2 Zinc ribbon domain zf-UBR PF02207.20 gi|289580298|ref|YP_003478764.1| - 0.02 15.1 1.6 0.033 14.3 1.6 1.3 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) OrfB_Zn_ribbon PF07282.11 gi|289580298|ref|YP_003478764.1| - 0.024 14.6 1.1 0.029 14.3 1.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|289580298|ref|YP_003478764.1| - 0.029 14.3 0.9 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|289580298|ref|YP_003478764.1| - 0.032 14.3 3.1 0.084 13.0 3.1 1.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_10 PF10058.9 gi|289580298|ref|YP_003478764.1| - 0.051 13.3 2.6 0.39 10.5 0.2 2.0 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1272 PF06906.11 gi|289580298|ref|YP_003478764.1| - 0.052 13.7 4.5 0.15 12.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Rad50_zn_hook PF04423.14 gi|289580298|ref|YP_003478764.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Rad50 zinc hook motif HypA PF01155.19 gi|289580298|ref|YP_003478764.1| - 0.17 11.9 0.3 0.18 11.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|289580298|ref|YP_003478764.1| - 0.29 11.7 3.6 8.1 7.1 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_10 PF04967.12 gi|289580299|ref|YP_003478765.1| - 3.7e-16 58.7 0.1 5.8e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580299|ref|YP_003478765.1| - 0.0068 16.3 1.6 0.026 14.4 0.5 2.0 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_50 PF18024.1 gi|289580299|ref|YP_003478765.1| - 0.016 14.8 0.1 0.071 12.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289580299|ref|YP_003478765.1| - 0.12 12.2 0.5 0.26 11.1 0.5 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|289580299|ref|YP_003478765.1| - 0.14 11.7 0.0 0.32 10.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MatE PF01554.18 gi|289580300|ref|YP_003478766.1| - 3.7e-44 150.2 29.2 7.9e-27 93.9 8.6 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|289580300|ref|YP_003478766.1| - 6.9e-06 26.2 54.7 0.00061 19.9 10.1 5.3 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF1467 PF07330.12 gi|289580300|ref|YP_003478766.1| - 0.19 11.6 0.1 0.19 11.6 0.1 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1467) tRNA_anti-codon PF01336.25 gi|289580301|ref|YP_003478767.1| - 9.9e-10 38.3 0.1 2.7e-09 36.9 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|289580301|ref|YP_003478767.1| - 0.0023 18.1 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|289580301|ref|YP_003478767.1| - 0.0024 18.1 0.7 0.0051 17.0 0.7 1.6 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|289580301|ref|YP_003478767.1| - 0.017 15.5 2.1 0.024 14.9 0.3 2.3 2 0 0 2 2 2 0 S1 RNA binding domain Poly_export PF02563.16 gi|289580301|ref|YP_003478767.1| - 0.047 13.9 0.0 0.18 12.0 0.0 2.2 1 1 0 1 1 1 0 Polysaccharide biosynthesis/export protein Rib_5-P_isom_A PF06026.14 gi|289580301|ref|YP_003478767.1| - 0.076 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Prok-JAB PF14464.6 gi|289580302|ref|YP_003478768.1| - 3.1e-10 39.9 0.0 4.2e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|289580302|ref|YP_003478768.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain CTP_transf_like PF01467.26 gi|289580303|ref|YP_003478769.1| - 5.9e-18 65.4 0.1 6.6e-18 65.3 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|289580303|ref|YP_003478769.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase Peripla_BP_2 PF01497.18 gi|289580303|ref|YP_003478769.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein TAT_signal PF10518.9 gi|289580304|ref|YP_003478770.1| - 0.0014 18.4 1.0 0.0036 17.1 1.0 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF1513 PF07433.11 gi|289580304|ref|YP_003478770.1| - 0.0028 16.8 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1513) Cytochrom_D1 PF02239.16 gi|289580304|ref|YP_003478770.1| - 0.008 14.8 0.2 0.28 9.7 0.0 2.4 1 1 0 2 2 2 1 Cytochrome D1 heme domain Lactonase PF10282.9 gi|289580304|ref|YP_003478770.1| - 0.17 11.1 0.0 21 4.2 0.0 3.3 2 2 2 4 4 4 0 Lactonase, 7-bladed beta-propeller ILVD_EDD PF00920.21 gi|289580306|ref|YP_003478772.1| - 1.9e-200 666.9 0.0 2.2e-200 666.7 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family GHMP_kinases_N PF00288.26 gi|289580308|ref|YP_003478774.1| - 1.9e-07 31.2 0.1 6.7e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|289580308|ref|YP_003478774.1| - 2e-06 28.0 0.2 3.6e-06 27.3 0.2 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Big_6 PF17936.1 gi|289580309|ref|YP_003478775.1| - 0.00096 19.4 1.4 5.6 7.3 0.2 3.8 3 1 1 4 4 4 2 Bacterial Ig domain TFIIS_C PF01096.18 gi|289580310|ref|YP_003478776.1| - 9e-17 60.7 12.2 1e-16 60.5 4.0 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|289580310|ref|YP_003478776.1| - 3.4e-07 30.0 9.9 3.5e-07 30.0 2.4 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|289580310|ref|YP_003478776.1| - 3e-06 26.4 11.9 0.0007 18.9 0.6 3.4 3 0 0 3 3 3 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|289580310|ref|YP_003478776.1| - 1.1e-05 25.3 8.5 0.00064 19.6 0.9 3.0 3 0 0 3 3 3 2 Prokaryotic RING finger family 1 DZR PF12773.7 gi|289580310|ref|YP_003478776.1| - 0.00011 22.1 11.2 0.0026 17.8 1.1 2.7 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|289580310|ref|YP_003478776.1| - 0.00018 21.4 12.5 0.011 15.6 2.8 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain ADK_lid PF05191.14 gi|289580310|ref|YP_003478776.1| - 0.0012 18.8 11.3 2.2 8.3 0.2 4.1 4 0 0 4 4 4 1 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|289580310|ref|YP_003478776.1| - 0.0022 17.5 16.1 1.5 8.4 0.7 4.3 3 2 0 3 3 3 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|289580310|ref|YP_003478776.1| - 0.0039 17.1 0.5 0.0039 17.1 0.5 2.6 2 1 1 3 3 3 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|289580310|ref|YP_003478776.1| - 0.0052 16.5 12.8 1.9 8.3 0.0 4.5 5 0 0 5 5 5 1 zinc-ribbon domain HypA PF01155.19 gi|289580310|ref|YP_003478776.1| - 0.0077 16.2 9.0 0.46 10.5 1.7 2.4 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|289580310|ref|YP_003478776.1| - 0.0094 15.6 6.3 0.093 12.4 1.3 2.2 1 1 1 2 2 2 1 Thaumarchaeal output domain 1 zf-ACC PF17848.1 gi|289580310|ref|YP_003478776.1| - 0.011 15.8 12.8 0.32 11.1 1.8 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|289580310|ref|YP_003478776.1| - 0.018 14.9 8.6 0.39 10.7 0.3 3.6 4 0 0 4 4 4 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|289580310|ref|YP_003478776.1| - 0.023 14.4 10.7 0.39 10.4 0.2 3.6 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|289580310|ref|YP_003478776.1| - 0.031 14.4 15.8 0.71 10.0 2.4 3.6 2 2 0 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|289580310|ref|YP_003478776.1| - 0.038 13.7 13.8 0.19 11.5 3.1 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-piccolo PF05715.13 gi|289580310|ref|YP_003478776.1| - 0.041 14.0 9.2 3.2 8.0 0.2 3.7 1 1 2 3 3 3 0 Piccolo Zn-finger zf-RRN7 PF11781.8 gi|289580310|ref|YP_003478776.1| - 0.042 13.5 15.5 0.31 10.8 0.3 4.0 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|289580310|ref|YP_003478776.1| - 0.061 13.3 15.9 0.39 10.7 2.7 4.2 2 2 1 4 4 4 0 Nudix N-terminal Ribosomal_S17e PF00833.18 gi|289580310|ref|YP_003478776.1| - 0.063 13.2 0.3 0.082 12.8 0.3 1.2 1 0 0 1 1 1 0 Ribosomal S17 GFA PF04828.14 gi|289580310|ref|YP_003478776.1| - 0.064 13.6 10.8 6.1 7.3 0.1 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_7 PF02591.15 gi|289580310|ref|YP_003478776.1| - 0.13 12.5 5.7 38 4.6 0.1 4.1 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf_UBZ PF18439.1 gi|289580310|ref|YP_003478776.1| - 0.17 11.5 13.9 2.9 7.5 0.2 4.1 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|289580310|ref|YP_003478776.1| - 0.23 11.2 15.1 8.4 6.2 0.1 4.3 4 0 0 4 4 4 0 Rubredoxin metal binding domain PhnA_Zn_Ribbon PF08274.12 gi|289580310|ref|YP_003478776.1| - 0.32 11.0 11.6 15 5.7 0.3 4.1 4 0 0 4 4 4 0 PhnA Zinc-Ribbon DUF2318 PF10080.9 gi|289580310|ref|YP_003478776.1| - 0.37 10.9 10.3 0.9 9.7 2.7 2.9 1 1 1 3 3 3 0 Predicted membrane protein (DUF2318) YhfH PF14149.6 gi|289580310|ref|YP_003478776.1| - 0.42 10.6 12.7 15 5.7 0.3 4.2 4 0 0 4 4 4 0 YhfH-like protein Lar_restr_allev PF14354.6 gi|289580310|ref|YP_003478776.1| - 0.61 10.5 15.2 9.7 6.7 2.6 3.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|289580310|ref|YP_003478776.1| - 0.72 9.6 7.6 0.54 10.0 0.6 2.8 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD PF00628.29 gi|289580310|ref|YP_003478776.1| - 1.2 9.1 11.8 1.7 8.6 1.6 2.6 2 1 0 2 2 2 0 PHD-finger UPF0547 PF10571.9 gi|289580310|ref|YP_003478776.1| - 1.6 8.8 13.9 1.9 8.6 1.1 3.7 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-RING_5 PF14634.6 gi|289580310|ref|YP_003478776.1| - 2.3 8.3 11.4 5.1 7.1 1.3 3.1 2 1 0 2 2 2 0 zinc-RING finger domain zf-trcl PF13451.6 gi|289580310|ref|YP_003478776.1| - 3 7.8 16.6 15 5.5 0.2 4.1 3 1 1 4 4 4 0 Probable zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|289580310|ref|YP_003478776.1| - 3.1 8.2 9.3 4.5 7.7 4.6 2.4 1 1 1 2 2 2 0 DnaJ central domain zinc-ribbons_6 PF07191.12 gi|289580310|ref|YP_003478776.1| - 3.1 7.8 10.6 1.6 8.8 1.5 2.5 2 1 0 2 2 2 0 zinc-ribbons zf-NADH-PPase PF09297.11 gi|289580310|ref|YP_003478776.1| - 3.6 7.3 14.5 0.78 9.4 2.3 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|289580310|ref|YP_003478776.1| - 3.8 8.1 12.6 31 5.2 0.2 4.0 3 1 1 4 4 4 0 Recombinase zinc beta ribbon domain Fer4_2 PF12797.7 gi|289580310|ref|YP_003478776.1| - 3.8 7.8 10.7 19 5.6 0.2 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain HalOD2 PF18547.1 gi|289580310|ref|YP_003478776.1| - 4.2 7.3 12.4 2.1 8.3 0.4 3.7 3 1 1 4 4 4 0 Halobacterial output domain 2 XPA_N PF01286.18 gi|289580310|ref|YP_003478776.1| - 6.2 7.0 11.5 18 5.5 0.2 3.9 4 0 0 4 4 4 0 XPA protein N-terminal zinc_ribbon_15 PF17032.5 gi|289580310|ref|YP_003478776.1| - 8.6 7.2 13.6 17 6.2 7.9 2.9 1 1 0 2 2 2 0 zinc-ribbon family eIF-5_eIF-2B PF01873.17 gi|289580310|ref|YP_003478776.1| - 8.8 6.2 8.8 1.2 9.0 0.9 2.6 1 1 1 2 2 2 0 Domain found in IF2B/IF5 IMS PF00817.20 gi|289580311|ref|YP_003478777.1| - 5.5e-37 127.1 0.0 9.1e-37 126.4 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|289580311|ref|YP_003478777.1| - 2.6e-12 47.5 0.0 2.4e-11 44.4 0.0 2.2 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|289580311|ref|YP_003478777.1| - 1.5e-05 25.1 0.0 2.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|289580311|ref|YP_003478777.1| - 4.9e-05 23.8 0.0 0.0015 19.1 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|289580311|ref|YP_003478777.1| - 0.0022 17.8 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|289580311|ref|YP_003478777.1| - 0.0081 16.4 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus PET117 PF15786.5 gi|289580312|ref|YP_003478778.1| - 5.8 7.3 5.0 36 4.7 0.3 2.4 2 0 0 2 2 2 0 PET assembly of cytochrome c oxidase, mitochondrial Trypan_PARP PF05887.11 gi|289580312|ref|YP_003478778.1| - 6.3 6.8 21.2 3.2 7.7 14.0 2.5 2 1 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) DUF983 PF06170.12 gi|289580313|ref|YP_003478779.1| - 2.9 8.4 10.5 1.9 9.0 1.7 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF983) UDG PF03167.19 gi|289580314|ref|YP_003478780.1| - 8.3e-12 45.4 0.0 1e-11 45.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|289580314|ref|YP_003478780.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) HTH_10 PF04967.12 gi|289580315|ref|YP_003478781.1| - 6.8e-17 61.0 0.0 1.1e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580315|ref|YP_003478781.1| - 2.3e-12 47.1 0.1 5e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|289580315|ref|YP_003478781.1| - 1.5e-07 30.8 0.1 3.1e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|289580315|ref|YP_003478781.1| - 0.018 14.8 0.1 0.045 13.6 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|289580315|ref|YP_003478781.1| - 0.035 13.7 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289580315|ref|YP_003478781.1| - 0.043 13.7 0.3 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.12 gi|289580315|ref|YP_003478781.1| - 0.071 12.8 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 YdjM PF04307.14 gi|289580316|ref|YP_003478782.1| - 6.1e-15 55.0 13.8 1.5e-14 53.7 13.8 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PhaG_MnhG_YufB PF03334.14 gi|289580316|ref|YP_003478782.1| - 3.7 7.9 14.4 0.5 10.6 9.0 2.3 2 1 0 2 2 2 0 Na+/H+ antiporter subunit COX15-CtaA PF02628.15 gi|289580317|ref|YP_003478783.1| - 1.3e-09 37.6 25.5 3.5e-05 23.0 18.7 2.9 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein TMEM237 PF15383.6 gi|289580317|ref|YP_003478783.1| - 0.77 8.8 5.5 0.082 12.0 0.9 1.6 2 0 0 2 2 2 0 Transmembrane protein 237 Peptidase_M24 PF00557.24 gi|289580318|ref|YP_003478784.1| - 9.2e-13 48.4 0.9 1.5e-12 47.7 0.9 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|289580318|ref|YP_003478784.1| - 0.065 13.9 0.0 0.24 12.1 0.0 1.9 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain TrmB PF01978.19 gi|289580319|ref|YP_003478785.1| - 1.2e-07 31.5 0.1 2.1e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|289580319|ref|YP_003478785.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|289580319|ref|YP_003478785.1| - 0.013 15.1 0.1 0.029 14.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Glyco_hydro_36 PF17167.4 gi|289580319|ref|YP_003478785.1| - 0.014 14.1 0.1 0.024 13.3 0.1 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase 36 superfamily, catalytic domain TFIIE_alpha PF02002.17 gi|289580319|ref|YP_003478785.1| - 0.022 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_9 PF08221.11 gi|289580319|ref|YP_003478785.1| - 0.074 13.2 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|289580319|ref|YP_003478785.1| - 0.076 13.1 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289580319|ref|YP_003478785.1| - 0.079 12.8 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Topo-VIb_trans PF09239.11 gi|289580320|ref|YP_003478786.1| - 1.7e-62 210.0 0.0 3.2e-62 209.0 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|289580320|ref|YP_003478786.1| - 2.2e-40 137.4 3.8 5.4e-40 136.1 2.6 2.4 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|289580320|ref|YP_003478786.1| - 2.2e-13 50.7 0.0 6.8e-13 49.1 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|289580320|ref|YP_003478786.1| - 4.1e-12 46.1 0.0 1.1e-11 44.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|289580320|ref|YP_003478786.1| - 0.01 15.8 0.1 0.11 12.4 0.0 2.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF3140 PF11338.8 gi|289580320|ref|YP_003478786.1| - 0.055 13.9 0.2 0.21 12.1 0.2 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) TP6A_N PF04406.14 gi|289580321|ref|YP_003478787.1| - 4.4e-15 55.4 0.1 7.9e-15 54.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|289580321|ref|YP_003478787.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family CBS PF00571.28 gi|289580323|ref|YP_003478789.1| - 8.9e-27 93.3 3.3 4.1e-13 49.6 0.1 2.2 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|289580323|ref|YP_003478789.1| - 0.052 13.5 0.0 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Fic PF02661.18 gi|289580325|ref|YP_003478791.1| - 1.7e-07 32.0 0.2 1.2e-06 29.4 0.2 2.2 1 1 0 1 1 1 1 Fic/DOC family MCLC PF05934.11 gi|289580327|ref|YP_003478793.1| - 0.11 11.2 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 Mid-1-related chloride channel (MCLC) MMR_HSR1_C PF08438.10 gi|289580328|ref|YP_003478794.1| - 1.4e-26 93.3 0.0 2.2e-26 92.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|289580328|ref|YP_003478794.1| - 4e-20 72.0 0.0 1.9e-19 69.8 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|289580328|ref|YP_003478794.1| - 2.1e-11 43.7 0.0 5e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|289580328|ref|YP_003478794.1| - 5.1e-10 39.1 0.1 4.2e-07 29.6 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|289580328|ref|YP_003478794.1| - 0.066 12.7 0.0 1.9 8.0 0.0 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DUF2267 PF10025.9 gi|289580329|ref|YP_003478795.1| - 4.3e-32 111.0 0.8 4.9e-32 110.8 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_1 PF00583.25 gi|289580330|ref|YP_003478796.1| - 1e-14 54.8 0.7 2.6e-14 53.4 0.3 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|289580330|ref|YP_003478796.1| - 1.5e-10 41.5 0.0 2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289580330|ref|YP_003478796.1| - 2.1e-06 28.1 0.0 4.5e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289580330|ref|YP_003478796.1| - 1.1e-05 26.1 0.1 1.8e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|289580330|ref|YP_003478796.1| - 2.1e-05 24.4 0.0 4e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_24 PF13412.6 gi|289580330|ref|YP_003478796.1| - 3.8e-05 23.1 0.0 7.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Acetyltransf_9 PF13527.7 gi|289580330|ref|YP_003478796.1| - 0.0003 20.9 0.0 0.00054 20.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|289580330|ref|YP_003478796.1| - 0.00043 20.3 0.0 0.0012 18.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.12 gi|289580330|ref|YP_003478796.1| - 0.0082 15.7 0.4 0.014 14.9 0.4 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain UBA_4 PF14555.6 gi|289580330|ref|YP_003478796.1| - 0.029 14.2 0.1 0.057 13.3 0.1 1.5 1 0 0 1 1 1 0 UBA-like domain Acetyltransf_CG PF14542.6 gi|289580330|ref|YP_003478796.1| - 0.074 13.2 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HCV_NS4b PF01001.19 gi|289580331|ref|YP_003478797.1| - 0.2 11.2 6.2 0.072 12.7 0.5 2.1 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4b DUF3267 PF11667.8 gi|289580331|ref|YP_003478797.1| - 0.95 9.8 4.2 5.2 7.4 4.2 2.0 1 1 0 1 1 1 0 Putative zincin peptidase PhnA_Zn_Ribbon PF08274.12 gi|289580332|ref|YP_003478798.1| - 0.03 14.3 2.2 0.054 13.5 2.2 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|289580332|ref|YP_003478798.1| - 0.11 12.5 0.2 0.19 11.8 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF5423 PF17461.2 gi|289580332|ref|YP_003478798.1| - 0.18 10.6 5.9 0.22 10.3 5.9 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5423) Hamartin PF04388.12 gi|289580332|ref|YP_003478798.1| - 1.1 7.9 6.3 1.2 7.7 6.3 1.0 1 0 0 1 1 1 0 Hamartin protein Peptidase_S64 PF08192.11 gi|289580332|ref|YP_003478798.1| - 4.7 5.6 5.5 5.6 5.3 5.5 1.0 1 0 0 1 1 1 0 Peptidase family S64 DUF3915 PF13054.6 gi|289580333|ref|YP_003478799.1| - 0.16 12.0 2.1 0.27 11.2 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) Med3 PF11593.8 gi|289580333|ref|YP_003478799.1| - 0.53 9.4 13.7 0.8 8.8 13.7 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Roughex PF06020.11 gi|289580333|ref|YP_003478799.1| - 1.4 7.9 13.1 2.1 7.4 13.1 1.1 1 0 0 1 1 1 0 Drosophila roughex protein RR_TM4-6 PF06459.12 gi|289580333|ref|YP_003478799.1| - 3.8 7.3 6.8 5.4 6.8 6.8 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 SelP_N PF04592.14 gi|289580333|ref|YP_003478799.1| - 3.9 6.8 11.1 5.5 6.3 11.1 1.1 1 0 0 1 1 1 0 Selenoprotein P, N terminal region IMPDH PF00478.25 gi|289580334|ref|YP_003478800.1| - 4.5e-141 469.8 5.1 5.2e-141 469.6 5.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|289580334|ref|YP_003478800.1| - 7.9e-24 83.9 3.2 4.5e-11 43.0 0.2 3.0 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|289580334|ref|YP_003478800.1| - 4.4e-14 52.6 2.5 9.4e-08 31.8 0.4 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|289580334|ref|YP_003478800.1| - 1e-09 37.9 2.1 2e-09 37.0 2.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|289580334|ref|YP_003478800.1| - 1.4e-05 24.6 1.6 2.8e-05 23.7 1.6 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|289580334|ref|YP_003478800.1| - 3.8e-05 23.1 5.2 8.5e-05 22.0 1.4 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|289580334|ref|YP_003478800.1| - 4.8e-05 22.7 1.9 0.00011 21.4 1.9 1.6 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|289580334|ref|YP_003478800.1| - 0.00023 20.5 1.2 0.00046 19.5 1.2 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|289580334|ref|YP_003478800.1| - 0.0014 17.8 0.1 0.0023 17.1 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|289580334|ref|YP_003478800.1| - 0.053 12.9 0.3 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Cupin_2 PF07883.11 gi|289580335|ref|YP_003478801.1| - 1e-09 37.9 2.7 1.2e-09 37.8 1.7 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|289580335|ref|YP_003478801.1| - 0.0068 16.3 0.5 0.014 15.3 0.4 1.7 1 1 1 2 2 2 1 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.12 gi|289580335|ref|YP_003478801.1| - 0.18 11.4 2.0 0.42 10.2 2.0 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding AF-4 PF05110.13 gi|289580336|ref|YP_003478802.1| - 0.0054 14.9 20.3 0.0059 14.8 20.3 1.1 1 0 0 1 1 1 1 AF-4 proto-oncoprotein Drc1-Sld2 PF11719.8 gi|289580336|ref|YP_003478802.1| - 0.036 13.6 8.3 0.04 13.5 8.3 1.1 1 0 0 1 1 1 0 DNA replication and checkpoint protein TAT_signal PF10518.9 gi|289580336|ref|YP_003478802.1| - 0.42 10.6 2.3 0.6 10.0 2.3 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BUD22 PF09073.10 gi|289580336|ref|YP_003478802.1| - 0.94 8.8 17.9 0.99 8.7 17.9 1.1 1 0 0 1 1 1 0 BUD22 TFIIA PF03153.13 gi|289580336|ref|YP_003478802.1| - 2.2 8.2 15.6 2.6 7.9 15.6 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Nop14 PF04147.12 gi|289580336|ref|YP_003478802.1| - 3.5 5.7 15.5 3.5 5.7 15.5 1.1 1 0 0 1 1 1 0 Nop14-like family DUF515 PF04415.12 gi|289580336|ref|YP_003478802.1| - 9.5 4.5 11.2 14 3.9 11.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) YcaO PF02624.16 gi|289580337|ref|YP_003478803.1| - 6.2e-55 186.7 7.9 8.7e-55 186.2 7.9 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Band_7 PF01145.25 gi|289580338|ref|YP_003478804.1| - 9.3e-38 130.0 3.0 9.3e-38 130.0 3.0 1.8 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|289580338|ref|YP_003478804.1| - 0.00021 21.0 0.1 0.00044 20.0 0.1 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family GrpE PF01025.19 gi|289580339|ref|YP_003478805.1| - 7.7e-43 146.0 7.1 7.7e-43 146.0 7.1 2.6 2 1 1 3 3 2 1 GrpE Exonuc_VII_L PF02601.15 gi|289580339|ref|YP_003478805.1| - 4.7e-05 23.1 3.0 6.7e-05 22.6 3.0 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit Spc7 PF08317.11 gi|289580339|ref|YP_003478805.1| - 0.00019 20.4 14.0 0.00033 19.6 14.0 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein SOG2 PF10428.9 gi|289580339|ref|YP_003478805.1| - 0.00044 19.6 12.4 0.00074 18.8 12.4 1.4 1 0 0 1 1 1 1 RAM signalling pathway protein Med9 PF07544.13 gi|289580339|ref|YP_003478805.1| - 0.0014 18.7 8.6 0.014 15.5 0.6 2.7 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Filament PF00038.21 gi|289580339|ref|YP_003478805.1| - 0.0022 17.6 15.9 0.0051 16.4 15.9 1.6 1 0 0 1 1 1 1 Intermediate filament protein Atg14 PF10186.9 gi|289580339|ref|YP_003478805.1| - 0.0039 16.3 13.0 0.0057 15.8 13.0 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 MAD PF05557.13 gi|289580339|ref|YP_003478805.1| - 0.0077 14.7 17.5 0.011 14.1 17.5 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein Fib_alpha PF08702.10 gi|289580339|ref|YP_003478805.1| - 0.0079 16.4 9.4 0.035 14.3 0.4 2.3 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family HIP1_clath_bdg PF16515.5 gi|289580339|ref|YP_003478805.1| - 0.022 15.4 16.9 0.76 10.4 5.0 2.8 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF948 PF06103.11 gi|289580339|ref|YP_003478805.1| - 0.029 14.6 3.5 2.3 8.5 2.2 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|289580339|ref|YP_003478805.1| - 0.041 13.9 6.8 0.1 12.6 5.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Bap31_Bap29_C PF18035.1 gi|289580339|ref|YP_003478805.1| - 0.047 13.7 11.4 1.8 8.7 3.2 3.8 4 0 0 4 4 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain Bacillus_HBL PF05791.11 gi|289580339|ref|YP_003478805.1| - 0.055 13.3 7.4 0.85 9.4 2.4 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) ADIP PF11559.8 gi|289580339|ref|YP_003478805.1| - 0.061 13.4 16.2 0.15 12.2 16.2 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding GAS PF13851.6 gi|289580339|ref|YP_003478805.1| - 0.068 12.5 15.2 0.1 11.9 14.6 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding TMPIT PF07851.13 gi|289580339|ref|YP_003478805.1| - 0.081 12.2 4.8 0.12 11.5 4.8 1.3 1 0 0 1 1 1 0 TMPIT-like protein ZapB PF06005.12 gi|289580339|ref|YP_003478805.1| - 0.12 12.8 14.3 0.17 12.4 11.4 2.5 1 1 1 2 2 2 0 Cell division protein ZapB MPS2 PF17060.5 gi|289580339|ref|YP_003478805.1| - 0.13 11.5 8.1 0.23 10.7 8.1 1.4 1 0 0 1 1 1 0 Monopolar spindle protein 2 YabA PF06156.13 gi|289580339|ref|YP_003478805.1| - 0.16 12.7 9.3 4.6 7.9 8.0 3.2 1 1 2 3 3 3 0 Initiation control protein YabA FlaC_arch PF05377.11 gi|289580339|ref|YP_003478805.1| - 0.18 12.2 8.3 7.1 7.1 0.3 3.6 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|289580339|ref|YP_003478805.1| - 0.19 11.8 21.2 0.091 12.9 16.8 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Noelin-1 PF12308.8 gi|289580339|ref|YP_003478805.1| - 0.21 11.6 2.2 0.45 10.5 2.2 1.5 1 0 0 1 1 1 0 Neurogenesis glycoprotein FliJ PF02050.16 gi|289580339|ref|YP_003478805.1| - 0.22 11.8 15.9 0.49 10.6 15.9 1.6 1 0 0 1 1 1 0 Flagellar FliJ protein BST2 PF16716.5 gi|289580339|ref|YP_003478805.1| - 0.22 12.1 13.3 0.38 11.4 5.1 2.8 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Syntaxin-6_N PF09177.11 gi|289580339|ref|YP_003478805.1| - 0.24 12.0 10.6 2.3 8.8 6.5 2.7 1 1 1 2 2 2 0 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|289580339|ref|YP_003478805.1| - 0.24 11.9 5.7 0.44 11.0 3.0 2.7 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein RPW8 PF05659.11 gi|289580339|ref|YP_003478805.1| - 0.24 11.1 2.6 0.47 10.2 2.1 1.7 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 AAA_13 PF13166.6 gi|289580339|ref|YP_003478805.1| - 0.28 9.8 10.2 0.37 9.4 8.2 1.6 1 1 0 1 1 1 0 AAA domain Sipho_Gp157 PF05565.11 gi|289580339|ref|YP_003478805.1| - 0.29 11.1 12.4 0.78 9.7 12.1 1.9 1 1 0 1 1 1 0 Siphovirus Gp157 DUF16 PF01519.16 gi|289580339|ref|YP_003478805.1| - 0.53 10.8 12.4 0.13 12.8 5.1 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|289580339|ref|YP_003478805.1| - 0.59 10.2 4.1 1.5 8.8 2.2 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|289580339|ref|YP_003478805.1| - 0.77 7.6 2.4 1.2 7.0 2.4 1.3 1 0 0 1 1 1 0 Prominin Lebercilin PF15619.6 gi|289580339|ref|YP_003478805.1| - 0.83 9.3 18.3 4.2 7.0 18.3 2.1 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease HAUS6_N PF14661.6 gi|289580339|ref|YP_003478805.1| - 0.84 9.2 8.5 1.8 8.1 8.5 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF812 PF05667.11 gi|289580339|ref|YP_003478805.1| - 1.2 7.9 24.1 2 7.2 24.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) CHASE6_C PF17150.4 gi|289580339|ref|YP_003478805.1| - 1.2 9.8 4.1 78 4.0 4.1 2.7 1 1 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain Spectrin PF00435.21 gi|289580339|ref|YP_003478805.1| - 1.3 9.6 13.0 7.5 7.1 6.2 3.0 1 1 0 2 2 2 0 Spectrin repeat KxDL PF10241.9 gi|289580339|ref|YP_003478805.1| - 1.4 9.3 7.9 1.1 9.6 0.6 2.4 1 1 2 3 3 3 0 Uncharacterized conserved protein TMF_DNA_bd PF12329.8 gi|289580339|ref|YP_003478805.1| - 1.8 8.6 16.2 12 6.0 13.4 3.2 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.20 gi|289580339|ref|YP_003478805.1| - 1.9 8.5 15.4 6.8 6.7 8.1 2.9 1 1 1 2 2 2 0 Prefoldin subunit Tho2 PF11262.8 gi|289580339|ref|YP_003478805.1| - 1.9 7.6 6.2 3 7.0 6.2 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Fez1 PF06818.15 gi|289580339|ref|YP_003478805.1| - 2.1 8.8 23.0 0.2 12.1 17.6 2.1 1 1 1 2 2 2 0 Fez1 Troponin PF00992.20 gi|289580339|ref|YP_003478805.1| - 2.4 8.4 17.1 5.2 7.4 16.7 1.8 1 1 0 1 1 1 0 Troponin PKcGMP_CC PF16808.5 gi|289580339|ref|YP_003478805.1| - 2.8 7.9 10.2 5.3 7.0 6.3 3.0 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Csm1_N PF18504.1 gi|289580339|ref|YP_003478805.1| - 2.9 8.3 20.4 1.3 9.4 6.4 3.6 2 1 2 4 4 4 0 Csm1 N-terminal domain SlyX PF04102.12 gi|289580339|ref|YP_003478805.1| - 3.3 8.4 14.4 14 6.4 4.7 3.7 1 1 1 2 2 2 0 SlyX FAM76 PF16046.5 gi|289580339|ref|YP_003478805.1| - 3.3 7.0 15.8 1.8 7.8 13.6 1.6 1 1 0 1 1 1 0 FAM76 protein COG2 PF06148.11 gi|289580339|ref|YP_003478805.1| - 3.9 7.6 9.8 15 5.7 9.1 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 GAT PF03127.14 gi|289580339|ref|YP_003478805.1| - 4.8 7.6 8.4 1.2e+02 3.1 8.4 3.0 1 1 0 1 1 1 0 GAT domain Golgin_A5 PF09787.9 gi|289580339|ref|YP_003478805.1| - 5.3 6.4 20.8 15 5.0 20.6 1.9 1 1 0 1 1 1 0 Golgin subfamily A member 5 ING PF12998.7 gi|289580339|ref|YP_003478805.1| - 5.4 7.7 10.2 1.9 9.1 0.9 2.5 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding LMBR1 PF04791.16 gi|289580339|ref|YP_003478805.1| - 6.6 5.5 6.8 9 5.1 6.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein ResIII PF04851.15 gi|289580340|ref|YP_003478806.1| - 3.2e-26 92.4 0.0 1e-25 90.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|289580340|ref|YP_003478806.1| - 1.1e-18 67.4 0.0 1.8e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|289580340|ref|YP_003478806.1| - 1.6e-13 51.0 0.0 1.1e-12 48.2 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|289580340|ref|YP_003478806.1| - 1.9e-10 40.5 2.2 6.4e-10 38.8 2.2 2.0 1 1 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|289580340|ref|YP_003478806.1| - 4e-07 30.0 0.0 2.5e-06 27.4 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|289580340|ref|YP_003478806.1| - 0.035 14.4 0.0 0.46 10.7 0.0 2.8 3 1 0 3 3 3 0 AAA domain HrpJ PF07201.11 gi|289580340|ref|YP_003478806.1| - 0.071 13.4 1.4 0.16 12.3 1.4 1.5 1 0 0 1 1 1 0 HrpJ-like domain HalOD1 PF18545.1 gi|289580341|ref|YP_003478807.1| - 1.3e-17 63.8 0.0 1.6e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MS_channel PF00924.18 gi|289580342|ref|YP_003478808.1| - 2.5e-42 144.8 0.0 3.8e-42 144.2 0.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2190 PF09956.9 gi|289580342|ref|YP_003478808.1| - 0.72 10.4 6.9 0.79 10.2 5.0 2.2 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) DUF790 PF05626.11 gi|289580343|ref|YP_003478809.1| - 1.6e-144 481.4 0.0 2.1e-144 481.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Indigoidine_A PF04227.12 gi|289580343|ref|YP_003478809.1| - 0.053 12.9 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 Indigoidine synthase A like protein TctB PF07331.11 gi|289580345|ref|YP_003478811.1| - 0.099 12.9 4.1 0.12 12.6 4.1 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Methyltranf_PUA PF13636.6 gi|289580346|ref|YP_003478812.1| - 1.3e-11 44.3 0.0 2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|289580347|ref|YP_003478813.1| - 2.7e-53 180.6 0.0 3.5e-53 180.2 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|289580347|ref|YP_003478813.1| - 2e-06 28.2 0.0 9.2e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|289580347|ref|YP_003478813.1| - 0.0063 16.3 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|289580347|ref|YP_003478813.1| - 0.021 14.9 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Polyketide_cyc2 PF10604.9 gi|289580347|ref|YP_003478813.1| - 0.022 15.0 2.3 0.1 12.9 0.9 2.4 2 1 0 2 2 2 0 Polyketide cyclase / dehydrase and lipid transport POR PF01558.18 gi|289580347|ref|YP_003478813.1| - 0.062 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase PAC2 PF09754.9 gi|289580348|ref|YP_003478814.1| - 1.6e-40 139.4 0.0 1.9e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family FAD_oxidored PF12831.7 gi|289580349|ref|YP_003478815.1| - 1.2e-14 54.5 3.0 5.6e-14 52.3 0.5 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|289580349|ref|YP_003478815.1| - 1.7e-14 53.5 1.0 8.8e-10 38.0 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|289580349|ref|YP_003478815.1| - 3.1e-12 46.3 0.6 5.6e-08 32.3 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|289580349|ref|YP_003478815.1| - 1.1e-10 41.7 4.4 7.6e-05 22.4 1.6 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289580349|ref|YP_003478815.1| - 6.2e-09 35.5 0.2 1.2e-05 24.8 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289580349|ref|YP_003478815.1| - 7.6e-09 35.1 0.0 1e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|289580349|ref|YP_003478815.1| - 1.6e-08 34.2 0.0 3.1e-08 33.3 0.0 1.5 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|289580349|ref|YP_003478815.1| - 1.5e-07 30.5 0.9 8.4e-06 24.7 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|289580349|ref|YP_003478815.1| - 2.5e-06 28.0 1.2 0.0078 16.8 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|289580349|ref|YP_003478815.1| - 1.4e-05 24.5 1.9 0.00014 21.2 0.9 2.2 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|289580349|ref|YP_003478815.1| - 1.7e-05 24.1 1.3 0.0028 16.8 0.2 2.5 3 0 0 3 3 3 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|289580349|ref|YP_003478815.1| - 2.6e-05 24.3 0.3 8.1e-05 22.8 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|289580349|ref|YP_003478815.1| - 0.0041 16.4 0.6 0.0075 15.6 0.6 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|289580349|ref|YP_003478815.1| - 0.058 12.6 0.5 0.16 11.2 0.2 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|289580349|ref|YP_003478815.1| - 0.1 12.5 0.7 0.18 11.6 0.7 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amidase PF01425.21 gi|289580351|ref|YP_003478817.1| - 1.3e-92 311.1 0.0 1.7e-92 310.8 0.0 1.1 1 0 0 1 1 1 1 Amidase DUF1970 PF09301.10 gi|289580351|ref|YP_003478817.1| - 0.13 12.5 0.1 0.46 10.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1970) Amidase PF01425.21 gi|289580352|ref|YP_003478818.1| - 2e-95 320.4 6.9 9.1e-92 308.4 0.5 2.0 2 0 0 2 2 2 2 Amidase Glyoxalase_6 PF18029.1 gi|289580352|ref|YP_003478818.1| - 0.15 12.9 6.3 12 6.8 0.0 3.6 3 0 0 3 3 3 0 Glyoxalase-like domain Aldo_ket_red PF00248.21 gi|289580353|ref|YP_003478819.1| - 8e-58 196.0 0.0 2.3e-55 187.9 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.20 gi|289580353|ref|YP_003478819.1| - 0.08 13.3 0.2 35 4.8 0.0 3.1 3 0 0 3 3 3 0 Transposase GPR_Gpa2_C PF11970.8 gi|289580354|ref|YP_003478820.1| - 0.089 12.9 1.0 0.24 11.5 0.1 2.2 2 1 0 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 C-term SLATT_1 PF18181.1 gi|289580354|ref|YP_003478820.1| - 0.44 10.5 2.4 1.1 9.2 2.4 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 TrkH PF02386.16 gi|289580355|ref|YP_003478821.1| - 0.0055 15.2 2.1 0.0064 15.0 2.1 1.0 1 0 0 1 1 1 1 Cation transport protein DUF3180 PF11377.8 gi|289580355|ref|YP_003478821.1| - 0.037 14.2 1.9 0.039 14.1 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) TrbC PF04956.13 gi|289580355|ref|YP_003478821.1| - 0.18 12.0 6.9 0.21 11.8 6.9 1.0 1 0 0 1 1 1 0 TrbC/VIRB2 family PAPS_reduct PF01507.19 gi|289580356|ref|YP_003478822.1| - 2.7e-18 66.6 0.0 2.6e-14 53.6 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|289580356|ref|YP_003478822.1| - 0.013 15.0 0.0 0.059 12.9 0.0 1.9 2 0 0 2 2 2 0 Diphthamide synthase UPF0223 PF05256.12 gi|289580356|ref|YP_003478822.1| - 0.11 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0223) Epimerase_2 PF02350.19 gi|289580357|ref|YP_003478823.1| - 5.1e-106 354.4 0.0 6e-106 354.2 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase baeRF_family2 PF18844.1 gi|289580357|ref|YP_003478823.1| - 0.087 12.9 0.5 0.47 10.5 0.1 2.3 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 DUF354 PF04007.12 gi|289580358|ref|YP_003478824.1| - 1.9e-05 23.9 0.0 7.4e-05 22.0 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|289580358|ref|YP_003478824.1| - 7.1e-05 22.9 0.2 0.00014 21.9 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|289580358|ref|YP_003478824.1| - 0.00012 22.5 2.3 0.00017 22.1 1.1 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.20 gi|289580358|ref|YP_003478824.1| - 0.11 12.5 0.0 0.37 10.8 0.0 1.9 1 1 1 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Flagellin_N PF00669.20 gi|289580358|ref|YP_003478824.1| - 0.21 11.7 0.1 0.35 11.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial flagellin N-terminal helical region Membralin PF09746.9 gi|289580360|ref|YP_003478826.1| - 0.087 11.8 0.1 0.096 11.7 0.1 1.1 1 0 0 1 1 1 0 Tumour-associated protein CRT10 PF08728.10 gi|289580360|ref|YP_003478826.1| - 0.087 11.0 0.1 0.089 10.9 0.1 1.0 1 0 0 1 1 1 0 CRT10 Glutaredoxin PF00462.24 gi|289580361|ref|YP_003478827.1| - 2.1e-15 56.7 0.0 4e-15 55.8 0.0 1.5 2 0 0 2 2 2 1 Glutaredoxin Sulf_transp PF04143.14 gi|289580362|ref|YP_003478828.1| - 7.2e-07 29.1 12.8 7.2e-07 29.1 12.8 2.0 1 1 1 2 2 2 1 Sulphur transport DUF3087 PF11286.8 gi|289580362|ref|YP_003478828.1| - 0.12 11.9 0.1 0.17 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) Sulf_transp PF04143.14 gi|289580363|ref|YP_003478829.1| - 2.3e-10 40.6 17.4 5.6e-10 39.3 17.4 1.6 1 1 0 1 1 1 1 Sulphur transport AstE_AspA PF04952.14 gi|289580364|ref|YP_003478830.1| - 7.5e-16 58.1 0.2 1.3e-15 57.3 0.2 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|289580364|ref|YP_003478830.1| - 0.00097 18.6 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DUF309 PF03745.14 gi|289580365|ref|YP_003478831.1| - 1.2e-14 53.7 0.1 1.9e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) PSGP PF07276.11 gi|289580365|ref|YP_003478831.1| - 0.089 13.2 2.2 0.23 11.9 2.2 1.7 1 0 0 1 1 1 0 Apopolysialoglycoprotein (PSGP) OrfB_Zn_ribbon PF07282.11 gi|289580366|ref|YP_003478832.1| - 3.9e-05 23.5 2.9 4.3e-05 23.4 2.9 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_4 PF14570.6 gi|289580366|ref|YP_003478832.1| - 0.0042 16.8 5.2 0.0052 16.6 5.2 1.1 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain C1_2 PF03107.16 gi|289580366|ref|YP_003478832.1| - 0.0042 17.4 3.5 0.0048 17.2 3.5 1.1 1 0 0 1 1 1 1 C1 domain C1_1 PF00130.22 gi|289580366|ref|YP_003478832.1| - 0.007 16.2 1.9 0.008 16.0 1.9 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.6 gi|289580366|ref|YP_003478832.1| - 0.019 15.0 1.2 0.022 14.8 1.2 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|289580366|ref|YP_003478832.1| - 0.047 13.7 1.6 0.044 13.8 1.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2318 PF10080.9 gi|289580366|ref|YP_003478832.1| - 0.061 13.4 1.6 0.068 13.3 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Rep_fac-A_C PF08646.10 gi|289580366|ref|YP_003478832.1| - 0.16 11.7 1.5 0.17 11.6 1.5 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn_ribbon_SprT PF17283.2 gi|289580366|ref|YP_003478832.1| - 0.24 11.3 9.3 0.3 11.1 0.7 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|289580366|ref|YP_003478832.1| - 0.27 11.0 8.7 3.1 7.6 2.7 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-HIT PF04438.16 gi|289580366|ref|YP_003478832.1| - 0.39 10.6 10.5 1.3 9.0 10.5 1.7 1 1 0 1 1 1 0 HIT zinc finger CarboxypepD_reg PF13620.6 gi|289580367|ref|YP_003478833.1| - 1.7e-07 31.4 0.4 2.8e-07 30.7 0.4 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|289580367|ref|YP_003478833.1| - 0.00043 20.2 0.0 0.0016 18.4 0.0 1.9 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|289580367|ref|YP_003478833.1| - 0.019 15.0 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 CarboxypepD_reg-like domain DUF4198 PF10670.9 gi|289580367|ref|YP_003478833.1| - 0.027 14.8 0.0 0.034 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Inositol_P PF00459.25 gi|289580368|ref|YP_003478834.1| - 4.3e-49 167.5 0.9 5.4e-49 167.1 0.9 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF63 PF01889.17 gi|289580369|ref|YP_003478835.1| - 1.4e-32 113.9 13.7 2.1e-31 110.1 10.6 2.6 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 TrmB PF01978.19 gi|289580370|ref|YP_003478836.1| - 1.2e-21 76.4 0.1 2.4e-20 72.2 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|289580370|ref|YP_003478836.1| - 0.0046 16.8 6.7 0.0056 16.5 0.2 3.3 4 1 0 4 4 4 1 MarR family HTH_IclR PF09339.10 gi|289580370|ref|YP_003478836.1| - 0.0083 15.9 0.1 0.045 13.5 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|289580370|ref|YP_003478836.1| - 0.02 15.0 0.0 0.063 13.4 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|289580370|ref|YP_003478836.1| - 0.023 15.1 0.0 0.066 13.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_20 PF12840.7 gi|289580370|ref|YP_003478836.1| - 0.13 12.3 4.1 4.7 7.4 0.1 3.6 3 0 0 3 3 3 0 Helix-turn-helix domain PadR PF03551.14 gi|289580370|ref|YP_003478836.1| - 0.16 12.0 0.0 0.43 10.6 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family NPCBM_assoc PF10633.9 gi|289580371|ref|YP_003478837.1| - 9.7e-13 48.2 8.4 0.0094 16.2 0.0 7.4 6 1 2 8 8 8 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|289580371|ref|YP_003478837.1| - 7.4e-06 26.2 6.3 0.58 10.4 0.0 4.8 4 2 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|289580371|ref|YP_003478837.1| - 0.00022 21.5 11.9 1.4 9.2 0.8 5.4 4 2 0 4 4 4 3 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|289580371|ref|YP_003478837.1| - 0.0018 17.5 0.3 0.2 10.7 0.0 2.1 2 0 0 2 2 2 2 PTHB1 C-terminus DUF3426 PF11906.8 gi|289580371|ref|YP_003478837.1| - 0.021 15.0 0.1 0.41 10.8 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3426) Pilin PF00114.19 gi|289580371|ref|YP_003478837.1| - 9.8 7.1 9.5 2.3 9.2 0.0 3.6 2 1 0 3 3 3 0 Pilin (bacterial filament) MMPL PF03176.15 gi|289580372|ref|YP_003478838.1| - 3.1e-35 121.7 20.3 1e-22 80.6 1.5 2.2 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|289580372|ref|YP_003478838.1| - 2.1e-12 46.0 23.5 2.7e-10 39.0 6.7 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|289580372|ref|YP_003478838.1| - 1.4e-08 34.7 10.9 2.4e-08 34.0 1.8 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|289580372|ref|YP_003478838.1| - 0.0085 15.5 26.4 0.034 13.5 10.5 2.3 2 0 0 2 2 2 2 Protein export membrane protein KAR PF15222.6 gi|289580372|ref|YP_003478838.1| - 0.018 15.3 2.2 5.4 7.4 0.2 2.8 2 0 0 2 2 2 0 Kidney androgen-regulated RIFIN PF02009.16 gi|289580372|ref|YP_003478838.1| - 0.27 11.1 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Rifin AA_permease_2 PF13520.6 gi|289580373|ref|YP_003478839.1| - 8.4e-46 156.6 40.5 1e-45 156.4 40.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|289580373|ref|YP_003478839.1| - 5.4e-37 127.5 40.6 7.1e-37 127.1 40.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|289580373|ref|YP_003478839.1| - 2.4e-24 86.4 6.2 6e-12 46.3 1.2 3.3 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|289580373|ref|YP_003478839.1| - 0.0041 17.2 3.8 0.0041 17.2 3.8 2.7 2 0 0 2 2 2 1 C-terminus of AA_permease Nop PF01798.18 gi|289580374|ref|YP_003478840.1| - 6e-40 137.1 0.0 9.1e-40 136.5 0.0 1.4 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin VWA_3_C PF18571.1 gi|289580374|ref|YP_003478840.1| - 0.0017 18.1 0.1 0.0055 16.5 0.1 1.9 1 0 0 1 1 1 1 von Willebrand factor type A C-terminal domain HutP PF09021.11 gi|289580374|ref|YP_003478840.1| - 0.014 15.7 0.1 0.16 12.3 0.0 2.2 2 0 0 2 2 2 0 HutP Fibrillarin PF01269.17 gi|289580375|ref|YP_003478841.1| - 4.5e-54 183.0 0.0 5.6e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin OrfB_IS605 PF01385.19 gi|289580376|ref|YP_003478842.1| - 2.7e-31 108.3 0.1 6.6e-31 107.0 0.1 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289580376|ref|YP_003478842.1| - 1.7e-19 69.5 0.2 3.2e-19 68.6 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|289580376|ref|YP_003478842.1| - 0.69 9.5 3.1 1.6 8.3 3.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Mhr1 PF12829.7 gi|289580377|ref|YP_003478843.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulation of mitochondrial recombination PQQ_3 PF13570.6 gi|289580378|ref|YP_003478844.1| - 4.4e-84 275.1 44.1 1.5e-12 47.6 0.9 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|289580378|ref|YP_003478844.1| - 2.2e-48 160.0 29.8 6.7e-11 41.6 0.1 9.9 10 0 0 10 10 10 9 PQQ enzyme repeat PQQ_2 PF13360.6 gi|289580378|ref|YP_003478844.1| - 5.5e-45 153.8 18.8 2e-13 50.5 1.5 4.1 1 1 3 4 4 4 4 PQQ-like domain DUF5050 PF16472.5 gi|289580378|ref|YP_003478844.1| - 0.00041 19.7 0.0 0.0059 15.9 0.0 2.1 2 1 0 3 3 3 1 Domain of unknown function (DUF5050) Tube PF17212.3 gi|289580378|ref|YP_003478844.1| - 0.004 17.2 0.0 50 3.9 0.0 4.9 2 1 2 6 6 6 0 Tail tubular protein WD40_like PF17005.5 gi|289580378|ref|YP_003478844.1| - 0.011 15.0 0.0 0.51 9.6 0.0 3.2 2 2 0 2 2 2 0 WD40-like domain SUKH-4 PF14435.6 gi|289580378|ref|YP_003478844.1| - 0.061 13.4 10.9 1.2 9.2 0.7 4.3 2 2 2 4 4 4 0 SUKH-4 immunity protein ANAPC4_WD40 PF12894.7 gi|289580378|ref|YP_003478844.1| - 0.066 13.5 0.0 1.3 9.3 0.0 2.7 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Rod_cone_degen PF15201.6 gi|289580378|ref|YP_003478844.1| - 0.22 11.6 8.2 11 6.3 0.1 5.2 6 0 0 6 6 6 0 Progressive rod-cone degeneration TAT_signal PF10518.9 gi|289580378|ref|YP_003478844.1| - 1 9.3 4.9 2.9 7.9 4.9 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TrkH PF02386.16 gi|289580379|ref|YP_003478845.1| - 1.4e-66 225.0 10.2 1.9e-65 221.3 10.2 1.9 1 1 0 1 1 1 1 Cation transport protein Form-deh_trans PF09163.11 gi|289580379|ref|YP_003478845.1| - 0.063 13.1 0.2 0.063 13.1 0.2 3.4 4 0 0 4 4 4 0 Formate dehydrogenase N, transmembrane TrkA_N PF02254.18 gi|289580380|ref|YP_003478846.1| - 6.1e-51 171.6 10.4 1.1e-26 93.4 0.8 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|289580380|ref|YP_003478846.1| - 1.7e-27 95.0 10.2 3.5e-14 52.4 0.0 3.9 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|289580380|ref|YP_003478846.1| - 1e-14 54.8 3.7 2.2e-07 31.3 0.6 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|289580380|ref|YP_003478846.1| - 1.8e-08 34.5 0.4 0.00084 19.4 0.1 2.6 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|289580380|ref|YP_003478846.1| - 3.6e-08 33.7 2.8 0.00013 22.3 0.8 2.5 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|289580380|ref|YP_003478846.1| - 1.5e-07 31.0 0.2 0.011 15.0 0.3 2.7 3 0 0 3 3 3 2 FAD binding domain F420_oxidored PF03807.17 gi|289580380|ref|YP_003478846.1| - 1.7e-06 28.5 0.1 0.015 15.9 0.0 3.0 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|289580380|ref|YP_003478846.1| - 2.8e-05 24.1 0.5 0.032 14.1 0.2 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|289580380|ref|YP_003478846.1| - 0.00014 21.8 9.6 0.083 12.8 0.9 3.1 3 0 0 3 3 3 2 NAD(P)H-binding AlaDh_PNT_C PF01262.21 gi|289580380|ref|YP_003478846.1| - 0.00014 21.2 1.6 0.019 14.3 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|289580380|ref|YP_003478846.1| - 0.00015 21.1 1.7 0.0012 18.2 1.7 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|289580380|ref|YP_003478846.1| - 0.00053 19.6 0.9 0.0055 16.3 0.3 2.8 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.25 gi|289580380|ref|YP_003478846.1| - 0.0015 18.1 1.1 0.22 10.9 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase Pyr_redox_3 PF13738.6 gi|289580380|ref|YP_003478846.1| - 0.0015 17.9 0.4 0.11 11.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|289580380|ref|YP_003478846.1| - 0.0026 17.4 0.1 0.009 15.7 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|289580380|ref|YP_003478846.1| - 0.0031 17.2 1.7 0.083 12.5 0.5 3.0 3 1 0 3 3 3 1 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|289580380|ref|YP_003478846.1| - 0.0042 17.6 1.6 1.3 9.6 0.2 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain ADH_zinc_N PF00107.26 gi|289580380|ref|YP_003478846.1| - 0.0046 16.9 0.5 0.21 11.6 0.0 3.2 3 1 0 3 3 2 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.15 gi|289580380|ref|YP_003478846.1| - 0.0063 16.7 0.1 0.2 11.8 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|289580380|ref|YP_003478846.1| - 0.056 12.8 0.0 8.8 5.6 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|289580380|ref|YP_003478846.1| - 0.057 14.0 2.1 19 5.9 0.5 3.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|289580380|ref|YP_003478846.1| - 0.065 13.2 0.0 3.9 7.4 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PGM_PMM_II PF02879.16 gi|289580380|ref|YP_003478846.1| - 0.17 12.5 2.9 2.4 8.8 0.1 2.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ThiF PF00899.21 gi|289580380|ref|YP_003478846.1| - 2.1 7.6 3.9 10 5.4 0.3 3.1 2 2 2 4 4 4 0 ThiF family TrkA_C PF02080.21 gi|289580381|ref|YP_003478847.1| - 6.4e-11 41.9 0.5 1.3e-10 41.0 0.5 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.6 gi|289580381|ref|YP_003478847.1| - 1.9e-10 40.4 0.5 4.4e-10 39.2 0.5 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|289580381|ref|YP_003478847.1| - 1.1e-09 37.7 0.2 1.9e-09 37.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|289580381|ref|YP_003478847.1| - 7.7e-07 29.0 0.0 1.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|289580381|ref|YP_003478847.1| - 1.3e-05 25.1 0.0 2.6e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|289580381|ref|YP_003478847.1| - 0.0016 18.1 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|289580381|ref|YP_003478847.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|289580381|ref|YP_003478847.1| - 0.011 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|289580381|ref|YP_003478847.1| - 0.083 13.3 0.1 0.19 12.1 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.6 gi|289580381|ref|YP_003478847.1| - 0.092 12.9 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|289580381|ref|YP_003478847.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|289580381|ref|YP_003478847.1| - 3.3 7.6 4.8 1.4 8.7 0.5 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain TackOD1 PF18551.1 gi|289580382|ref|YP_003478848.1| - 0.00062 19.5 0.2 0.00092 18.9 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|289580382|ref|YP_003478848.1| - 0.0089 16.0 0.7 0.014 15.4 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|289580382|ref|YP_003478848.1| - 0.017 15.1 0.4 0.029 14.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|289580382|ref|YP_003478848.1| - 0.02 14.4 2.8 0.25 10.9 0.2 3.0 1 1 1 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|289580382|ref|YP_003478848.1| - 0.024 14.0 0.6 7.2 6.0 0.2 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-RRN7 PF11781.8 gi|289580382|ref|YP_003478848.1| - 0.035 13.8 3.6 0.23 11.2 0.2 2.3 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TFIIS_C PF01096.18 gi|289580382|ref|YP_003478848.1| - 0.078 12.8 0.5 7.7 6.5 0.1 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|289580382|ref|YP_003478848.1| - 0.13 12.2 2.9 0.31 11.0 0.1 2.7 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit SDA1 PF05285.12 gi|289580382|ref|YP_003478848.1| - 0.18 11.2 20.2 0.19 11.2 20.2 1.0 1 0 0 1 1 1 0 SDA1 Zn-ribbon_8 PF09723.10 gi|289580382|ref|YP_003478848.1| - 0.22 11.7 7.1 0.28 11.4 5.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF2072 PF09845.9 gi|289580382|ref|YP_003478848.1| - 0.25 11.6 10.0 0.57 10.5 10.0 1.7 1 1 0 1 1 1 0 Zn-ribbon containing protein zf-ribbon_3 PF13248.6 gi|289580382|ref|YP_003478848.1| - 0.3 10.6 2.6 13 5.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|289580382|ref|YP_003478848.1| - 0.53 10.3 4.3 5.9 7.0 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|289580382|ref|YP_003478848.1| - 1.1 10.0 5.7 9.7 7.0 0.4 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|289580382|ref|YP_003478848.1| - 1.3 8.9 4.3 2.2 8.1 4.3 1.4 1 1 0 1 1 1 0 Rubredoxin metal binding domain Apt1 PF10351.9 gi|289580382|ref|YP_003478848.1| - 5.4 5.7 11.3 5.9 5.6 11.3 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain SURF2 PF05477.11 gi|289580382|ref|YP_003478848.1| - 5.5 6.6 9.1 6.8 6.3 9.1 1.2 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) GCS2 PF04107.13 gi|289580384|ref|YP_003478850.1| - 3.1e-74 249.9 0.5 3.7e-74 249.7 0.5 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|289580384|ref|YP_003478850.1| - 0.051 13.2 0.1 7.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Putative amidoligase enzyme GCS PF03074.16 gi|289580384|ref|YP_003478850.1| - 0.13 11.7 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TAT_signal PF10518.9 gi|289580385|ref|YP_003478851.1| - 0.1 12.5 2.5 0.12 12.2 2.5 1.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LPAM_1 PF08139.12 gi|289580385|ref|YP_003478851.1| - 0.19 12.3 0.5 0.23 12.0 0.5 1.1 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Pribosyltran PF00156.27 gi|289580386|ref|YP_003478852.1| - 9.2e-16 57.8 0.1 2.4e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|289580386|ref|YP_003478852.1| - 0.00065 19.4 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|289580386|ref|YP_003478852.1| - 0.009 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|289580386|ref|YP_003478852.1| - 0.015 15.3 0.1 0.094 12.7 0.1 2.1 2 0 0 2 2 2 0 HTH domain GerE PF00196.19 gi|289580386|ref|YP_003478852.1| - 0.028 14.0 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|289580386|ref|YP_003478852.1| - 0.044 13.6 0.1 0.38 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PRTase_2 PF15609.6 gi|289580386|ref|YP_003478852.1| - 0.047 13.2 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Sigma70_r4 PF04545.16 gi|289580386|ref|YP_003478852.1| - 0.05 13.1 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|289580386|ref|YP_003478852.1| - 0.068 12.7 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289580386|ref|YP_003478852.1| - 0.1 12.5 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family UPRTase PF14681.6 gi|289580386|ref|YP_003478852.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Hydrolase_3 PF08282.12 gi|289580387|ref|YP_003478853.1| - 6.1e-10 39.3 0.0 6.6e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580387|ref|YP_003478853.1| - 0.0032 17.8 0.1 0.0097 16.2 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289580387|ref|YP_003478853.1| - 0.0079 16.6 0.8 1.5 9.2 0.1 3.0 2 2 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF1987 PF09345.10 gi|289580387|ref|YP_003478853.1| - 0.17 11.6 0.1 0.58 9.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1987) HAD_2 PF13419.6 gi|289580388|ref|YP_003478854.1| - 8.7e-20 71.5 0.0 2.8e-18 66.6 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580388|ref|YP_003478854.1| - 8.7e-10 39.2 4.1 2.6e-08 34.4 0.5 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289580388|ref|YP_003478854.1| - 7.1e-06 26.0 0.0 1.6e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289580388|ref|YP_003478854.1| - 0.00095 19.6 1.5 0.0024 18.3 1.5 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|289580388|ref|YP_003478854.1| - 0.012 15.5 0.2 0.18 11.6 0.2 2.1 1 1 0 1 1 1 0 Acid Phosphatase Pantoate_transf PF02548.15 gi|289580390|ref|YP_003478856.1| - 5.7e-103 343.8 0.6 6.9e-103 343.5 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|289580390|ref|YP_003478856.1| - 0.0001 21.9 1.6 0.0001 21.9 1.6 2.0 2 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.14 gi|289580390|ref|YP_003478856.1| - 0.098 12.4 0.2 0.18 11.5 0.2 1.5 1 1 0 1 1 1 0 Amidohydrolase DUF2929 PF11151.8 gi|289580391|ref|YP_003478857.1| - 1.4 9.3 10.1 7.2 7.0 0.3 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2929) Abhydrolase_6 PF12697.7 gi|289580393|ref|YP_003478859.1| - 3.2e-21 77.0 4.7 3.9e-21 76.7 4.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|289580393|ref|YP_003478859.1| - 8.3e-17 61.7 0.9 7.3e-15 55.3 0.9 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289580393|ref|YP_003478859.1| - 1.6e-14 53.7 0.1 2.5e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|289580393|ref|YP_003478859.1| - 7.1e-06 26.1 0.1 2.2e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 TAP-like protein FSH1 PF03959.13 gi|289580393|ref|YP_003478859.1| - 0.0033 17.1 0.1 0.0071 16.0 0.1 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|289580393|ref|YP_003478859.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|289580393|ref|YP_003478859.1| - 0.026 14.0 0.2 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family Esterase PF00756.20 gi|289580393|ref|YP_003478859.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.8 1 1 0 1 1 1 0 Putative esterase NYN PF01936.18 gi|289580394|ref|YP_003478860.1| - 4.8e-20 72.5 0.0 5.6e-20 72.3 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|289580394|ref|YP_003478860.1| - 0.0017 18.8 0.5 0.15 12.6 0.2 2.0 1 1 1 2 2 2 2 CoA binding domain PIN7 PF18475.1 gi|289580394|ref|YP_003478860.1| - 0.0093 16.6 0.0 0.014 16.0 0.0 1.3 1 0 0 1 1 1 1 PIN domain Peripla_BP_4 PF13407.6 gi|289580394|ref|YP_003478860.1| - 0.0098 15.5 1.0 0.013 15.1 1.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ADH_zinc_N PF00107.26 gi|289580394|ref|YP_003478860.1| - 0.1 12.5 1.0 11 6.0 0.1 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Peptidase_S8 PF00082.22 gi|289580395|ref|YP_003478861.1| - 4.6e-46 157.4 3.2 9e-46 156.5 3.2 1.4 1 0 0 1 1 1 1 Subtilase family Peptidase_S8 PF00082.22 gi|289580396|ref|YP_003478862.1| - 5.6e-50 170.3 8.7 8.9e-50 169.6 8.7 1.3 1 0 0 1 1 1 1 Subtilase family GCV_T PF01571.21 gi|289580397|ref|YP_003478863.1| - 1.2e-81 273.9 0.1 1.5e-81 273.6 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|289580397|ref|YP_003478863.1| - 4.9e-22 77.6 0.1 9.8e-22 76.7 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|289580397|ref|YP_003478863.1| - 0.0005 20.2 0.1 0.36 11.0 0.0 2.2 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family GCV_H PF01597.19 gi|289580398|ref|YP_003478864.1| - 1e-42 144.9 0.0 1.1e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein GIDE PF12483.8 gi|289580400|ref|YP_003478866.1| - 0.011 15.1 0.1 0.049 13.0 0.0 1.9 2 0 0 2 2 2 0 E3 Ubiquitin ligase Trp_oprn_chp PF09534.10 gi|289580401|ref|YP_003478867.1| - 0.0014 18.5 1.8 0.0017 18.2 1.8 1.1 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF2892 PF11127.8 gi|289580401|ref|YP_003478867.1| - 0.075 13.1 1.8 0.098 12.7 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) HTH_31 PF13560.6 gi|289580402|ref|YP_003478868.1| - 2.1e-08 34.4 0.2 7.9e-08 32.5 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|289580402|ref|YP_003478868.1| - 5.8e-07 29.5 0.0 1.7e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|289580402|ref|YP_003478868.1| - 0.00012 22.0 0.0 0.0003 20.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain NOB1_Zn_bind PF08772.11 gi|289580403|ref|YP_003478869.1| - 0.0043 17.2 0.8 0.15 12.2 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.15 gi|289580403|ref|YP_003478869.1| - 0.033 13.8 2.6 0.67 9.6 0.4 2.2 2 0 0 2 2 2 0 RecR protein zf-RRN7 PF11781.8 gi|289580403|ref|YP_003478869.1| - 0.37 10.5 5.2 6.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_20 PF12840.7 gi|289580404|ref|YP_003478870.1| - 1.2e-09 38.1 0.2 1.6e-09 37.7 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289580404|ref|YP_003478870.1| - 3.5e-07 30.0 0.1 5.2e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|289580404|ref|YP_003478870.1| - 5.9e-07 29.3 0.1 9.3e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289580404|ref|YP_003478870.1| - 8.3e-07 28.5 0.2 2.2e-06 27.1 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|289580404|ref|YP_003478870.1| - 3.4e-05 23.7 0.1 4.7e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|289580404|ref|YP_003478870.1| - 0.00012 21.9 0.1 0.0002 21.2 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|289580404|ref|YP_003478870.1| - 0.00012 21.7 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289580404|ref|YP_003478870.1| - 0.0013 18.5 0.2 0.0035 17.2 0.0 1.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|289580404|ref|YP_003478870.1| - 0.0037 17.2 0.1 0.0063 16.4 0.1 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|289580404|ref|YP_003478870.1| - 0.0057 16.6 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_50 PF18024.1 gi|289580404|ref|YP_003478870.1| - 0.006 16.2 0.0 0.014 15.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain ArsR PF09824.9 gi|289580404|ref|YP_003478870.1| - 0.0068 16.0 0.0 0.0078 15.8 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator FUR PF01475.19 gi|289580404|ref|YP_003478870.1| - 0.0094 16.1 0.1 0.014 15.6 0.0 1.4 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_22 PF13309.6 gi|289580404|ref|YP_003478870.1| - 0.012 15.6 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|289580404|ref|YP_003478870.1| - 0.034 14.0 0.0 0.042 13.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|289580404|ref|YP_003478870.1| - 0.04 14.4 0.1 0.064 13.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|289580404|ref|YP_003478870.1| - 0.043 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|289580404|ref|YP_003478870.1| - 0.058 13.6 0.0 0.13 12.5 0.0 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|289580404|ref|YP_003478870.1| - 0.062 13.7 0.0 0.095 13.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF2089 PF09862.9 gi|289580404|ref|YP_003478870.1| - 0.071 13.1 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_Crp_2 PF13545.6 gi|289580404|ref|YP_003478870.1| - 0.075 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|289580404|ref|YP_003478870.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PIRT PF15099.6 gi|289580405|ref|YP_003478871.1| - 0.092 12.3 0.8 0.098 12.2 0.8 1.2 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family CPP1-like PF11833.8 gi|289580405|ref|YP_003478871.1| - 0.27 10.9 3.4 0.29 10.8 3.4 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like MoCF_biosynth PF00994.24 gi|289580406|ref|YP_003478872.1| - 1.4e-31 109.1 0.1 2e-31 108.6 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MraZ PF02381.18 gi|289580408|ref|YP_003478874.1| - 0.014 15.4 0.4 0.041 13.9 0.0 1.8 2 1 0 2 2 2 0 MraZ protein, putative antitoxin-like DUF1474 PF07342.11 gi|289580408|ref|YP_003478874.1| - 0.033 14.7 0.0 0.035 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1474) PIN PF01850.21 gi|289580409|ref|YP_003478875.1| - 1.8e-07 31.7 1.1 2.1e-07 31.4 1.1 1.1 1 0 0 1 1 1 1 PIN domain AAA PF00004.29 gi|289580410|ref|YP_003478876.1| - 3.7e-11 43.6 0.1 2.1e-10 41.2 0.0 2.3 2 1 1 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|289580410|ref|YP_003478876.1| - 3.7e-06 26.8 0.0 7.7e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|289580410|ref|YP_003478876.1| - 5.4e-05 23.5 0.3 0.094 13.0 0.0 3.7 2 2 1 3 3 3 1 AAA domain AAA_assoc_2 PF16193.5 gi|289580410|ref|YP_003478876.1| - 0.00053 20.3 1.2 0.001 19.4 0.3 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA_33 PF13671.6 gi|289580410|ref|YP_003478876.1| - 0.0011 19.2 1.3 0.0054 16.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|289580410|ref|YP_003478876.1| - 0.0014 19.1 1.2 0.015 15.7 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|289580410|ref|YP_003478876.1| - 0.0073 16.3 0.2 0.063 13.3 0.0 2.6 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|289580410|ref|YP_003478876.1| - 0.0095 15.5 1.6 1.1 8.8 0.0 3.1 2 1 0 3 3 3 1 AAA domain DUF1314 PF07013.11 gi|289580410|ref|YP_003478876.1| - 0.011 15.7 0.1 0.024 14.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1314) DUF2075 PF09848.9 gi|289580410|ref|YP_003478876.1| - 0.011 15.0 1.6 2.7 7.2 0.0 3.1 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2075) Hydin_ADK PF17213.3 gi|289580410|ref|YP_003478876.1| - 0.013 15.8 0.4 0.013 15.8 0.4 2.6 2 1 0 2 2 2 0 Hydin Adenylate kinase-like domain RsgA_GTPase PF03193.16 gi|289580410|ref|YP_003478876.1| - 0.014 15.3 0.0 0.046 13.6 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|289580410|ref|YP_003478876.1| - 0.016 15.5 0.5 0.039 14.2 0.1 2.0 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.18 gi|289580410|ref|YP_003478876.1| - 0.019 14.7 0.0 0.41 10.3 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|289580410|ref|YP_003478876.1| - 0.023 15.1 0.0 0.077 13.4 0.0 2.0 2 0 0 2 2 1 0 RNA helicase IstB_IS21 PF01695.17 gi|289580410|ref|YP_003478876.1| - 0.028 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|289580410|ref|YP_003478876.1| - 0.038 13.9 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|289580410|ref|YP_003478876.1| - 0.047 13.0 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Bac_DnaA PF00308.18 gi|289580410|ref|YP_003478876.1| - 0.059 13.2 0.2 2.7 7.8 0.0 3.1 3 1 1 4 4 4 0 Bacterial dnaA protein NACHT PF05729.12 gi|289580410|ref|YP_003478876.1| - 0.065 13.1 0.0 0.28 11.1 0.0 2.1 3 0 0 3 3 2 0 NACHT domain IPT PF01745.16 gi|289580410|ref|YP_003478876.1| - 0.077 12.4 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase DUF815 PF05673.13 gi|289580410|ref|YP_003478876.1| - 0.082 12.1 0.0 0.64 9.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DEAD PF00270.29 gi|289580410|ref|YP_003478876.1| - 0.089 12.6 0.0 9.7 5.9 0.0 3.0 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|289580410|ref|YP_003478876.1| - 0.13 12.8 0.0 0.13 12.8 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_3 PF07726.11 gi|289580410|ref|YP_003478876.1| - 0.16 11.8 0.0 0.77 9.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 gi|289580410|ref|YP_003478876.1| - 0.23 10.4 0.0 0.52 9.2 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region DUF3592 PF12158.8 gi|289580411|ref|YP_003478877.1| - 4.4e-22 78.7 0.5 6.2e-22 78.3 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) Trp_oprn_chp PF09534.10 gi|289580411|ref|YP_003478877.1| - 0.1 12.4 0.2 1.5 8.6 0.2 2.1 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Aminotran_1_2 PF00155.21 gi|289580412|ref|YP_003478878.1| - 7.5e-55 186.6 0.0 8.6e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|289580412|ref|YP_003478878.1| - 0.0049 15.4 1.6 0.018 13.6 0.1 2.3 2 1 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|289580412|ref|YP_003478878.1| - 0.007 15.7 4.1 0.04 13.2 3.0 2.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.18 gi|289580412|ref|YP_003478878.1| - 0.091 12.3 0.0 0.29 10.6 0.0 1.8 2 1 0 2 2 2 0 Periplasmic binding protein Aminotran_5 PF00266.19 gi|289580412|ref|YP_003478878.1| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|289580412|ref|YP_003478878.1| - 0.14 10.8 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Flg_hook PF02120.16 gi|289580412|ref|YP_003478878.1| - 0.15 11.9 0.1 2 8.4 0.0 2.4 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK AZUL PF16558.5 gi|289580412|ref|YP_003478878.1| - 0.67 10.2 1.8 34 4.8 0.0 2.4 2 0 0 2 2 2 0 Amino-terminal Zinc-binding domain of ubiquitin ligase E3A RuBisCO_large PF00016.20 gi|289580413|ref|YP_003478879.1| - 2.2e-97 325.8 1.7 5e-97 324.7 1.7 1.5 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|289580413|ref|YP_003478879.1| - 1.5e-39 134.9 0.0 2.3e-39 134.3 0.0 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain RsdA_SigD_bd PF16751.5 gi|289580413|ref|YP_003478879.1| - 0.17 12.2 2.7 13 6.1 0.7 3.6 2 1 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region MYCBPAP PF14646.6 gi|289580414|ref|YP_003478880.1| - 2.4 7.0 4.8 3.1 6.6 4.8 1.2 1 0 0 1 1 1 0 MYCBP-associated protein family N6_N4_Mtase PF01555.18 gi|289580416|ref|YP_003478882.1| - 4.3e-34 118.2 0.0 5.4e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|289580416|ref|YP_003478882.1| - 2.3e-06 27.4 0.0 0.00058 19.6 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|289580416|ref|YP_003478882.1| - 0.019 15.6 0.0 6.4 7.5 0.0 3.0 3 0 0 3 3 3 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|289580416|ref|YP_003478882.1| - 0.02 14.5 0.0 0.17 11.5 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PCMT PF01135.19 gi|289580416|ref|YP_003478882.1| - 0.17 11.6 0.0 1 9.0 0.0 1.9 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CoA_binding PF02629.19 gi|289580417|ref|YP_003478883.1| - 6.5e-25 87.6 0.7 6.5e-25 87.6 0.7 2.2 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|289580417|ref|YP_003478883.1| - 1.5e-14 54.1 1.1 3.3e-14 53.0 1.1 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|289580417|ref|YP_003478883.1| - 8.4e-11 41.8 0.0 1.4e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|289580417|ref|YP_003478883.1| - 2.1e-05 25.0 0.0 0.00015 22.2 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|289580417|ref|YP_003478883.1| - 0.015 14.9 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF1611_N PF17396.2 gi|289580417|ref|YP_003478883.1| - 0.18 12.0 0.4 1.2 9.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain ATP-grasp_2 PF08442.10 gi|289580418|ref|YP_003478884.1| - 2.8e-61 206.6 0.3 5.2e-61 205.7 0.3 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|289580418|ref|YP_003478884.1| - 8.9e-19 67.8 3.7 1e-17 64.4 2.9 2.4 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|289580418|ref|YP_003478884.1| - 4.6e-13 49.2 0.3 1.1e-12 48.0 0.3 1.6 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|289580418|ref|YP_003478884.1| - 1.4e-12 47.6 0.7 9.6e-10 38.3 0.3 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|289580418|ref|YP_003478884.1| - 8.8e-08 31.9 0.1 1.8e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|289580418|ref|YP_003478884.1| - 0.00015 21.6 0.5 0.00027 20.7 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Hydrolase_6 PF13344.6 gi|289580418|ref|YP_003478884.1| - 0.15 12.2 1.4 11 6.2 0.0 3.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase UbiA PF01040.18 gi|289580419|ref|YP_003478885.1| - 1.7e-21 76.7 25.3 2.5e-21 76.1 25.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3784 PF12650.7 gi|289580419|ref|YP_003478885.1| - 0.38 11.0 0.0 0.38 11.0 0.0 3.8 2 1 2 4 4 4 0 Domain of unknown function (DUF3784) Zn-ribbon_8 PF09723.10 gi|289580420|ref|YP_003478886.1| - 0.021 14.9 0.9 0.15 12.2 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DiS_P_DiS PF06750.13 gi|289580420|ref|YP_003478886.1| - 0.029 14.5 0.0 0.031 14.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Fer2_BFD PF04324.15 gi|289580420|ref|YP_003478886.1| - 0.05 14.0 0.3 1.3 9.4 0.0 2.1 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain OrfB_Zn_ribbon PF07282.11 gi|289580420|ref|YP_003478886.1| - 0.056 13.4 0.1 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Anti-TRAP PF15777.5 gi|289580420|ref|YP_003478886.1| - 0.056 13.4 0.6 0.056 13.4 0.6 1.9 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein TF_Zn_Ribbon PF08271.12 gi|289580420|ref|YP_003478886.1| - 5.6 6.6 7.5 0.3 10.7 0.3 2.4 2 1 1 3 3 3 0 TFIIB zinc-binding GSDH PF07995.11 gi|289580422|ref|YP_003478888.1| - 6e-30 104.7 0.4 1.2e-29 103.7 0.1 1.6 2 0 0 2 2 2 1 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.20 gi|289580422|ref|YP_003478888.1| - 7.7e-11 42.3 0.0 3.1e-10 40.4 0.0 2.0 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|289580422|ref|YP_003478888.1| - 0.058 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain PQQ PF01011.21 gi|289580423|ref|YP_003478889.1| - 3.5e-14 51.9 10.4 0.0031 17.4 0.4 7.0 7 0 0 7 7 7 4 PQQ enzyme repeat PQQ_2 PF13360.6 gi|289580423|ref|YP_003478889.1| - 1.3e-12 47.8 4.9 6.5e-05 22.6 0.0 3.6 3 1 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289580423|ref|YP_003478889.1| - 1.3e-07 31.9 3.2 0.00058 20.3 1.1 4.5 4 0 0 4 4 4 2 PQQ-like domain TAT_signal PF10518.9 gi|289580424|ref|YP_003478890.1| - 0.13 12.1 0.1 0.35 10.8 0.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TraT PF05818.12 gi|289580425|ref|YP_003478891.1| - 1.2 8.7 5.9 1.3 8.6 5.6 1.3 1 1 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF4157 PF13699.6 gi|289580427|ref|YP_003478893.1| - 1.9e-26 92.1 0.4 1.9e-26 92.1 0.4 2.5 4 0 0 4 4 4 1 Domain of unknown function (DUF4157) Mit_ribos_Mrp51 PF11709.8 gi|289580427|ref|YP_003478893.1| - 0.026 14.1 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit DUF724 PF05266.14 gi|289580427|ref|YP_003478893.1| - 0.042 13.7 0.2 0.068 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) BLOC1_2 PF10046.9 gi|289580427|ref|YP_003478893.1| - 0.07 13.4 0.2 0.41 11.0 0.3 1.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF883 PF05957.13 gi|289580427|ref|YP_003478893.1| - 9.8 6.9 11.0 1.1 9.9 4.0 2.9 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF883) DUF4157 PF13699.6 gi|289580429|ref|YP_003478895.1| - 4.7e-32 110.0 0.2 4.7e-32 110.0 0.2 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4157) DUF4157 PF13699.6 gi|289580431|ref|YP_003478897.1| - 1.4e-08 34.9 0.1 1.4e-08 34.9 0.1 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4157) YqfQ PF14181.6 gi|289580431|ref|YP_003478897.1| - 9 6.4 9.2 2.5 8.3 5.5 1.8 1 1 1 2 2 2 0 YqfQ-like protein DUF4157 PF13699.6 gi|289580433|ref|YP_003478899.1| - 6.3e-32 109.7 2.8 1.2e-31 108.8 0.2 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) DUF4157 PF13699.6 gi|289580435|ref|YP_003478901.1| - 1.2e-26 92.7 0.3 1.2e-26 92.7 0.3 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) DUF1264 PF06884.11 gi|289580435|ref|YP_003478901.1| - 0.038 13.6 0.5 0.073 12.7 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1264) DUF724 PF05266.14 gi|289580435|ref|YP_003478901.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) AAA PF00004.29 gi|289580436|ref|YP_003478902.1| - 2.5e-28 99.1 0.0 1.9e-27 96.3 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|289580436|ref|YP_003478902.1| - 2.4e-05 24.1 0.3 0.0001 22.0 0.2 1.9 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) AAA_33 PF13671.6 gi|289580436|ref|YP_003478902.1| - 0.0022 18.2 0.4 0.018 15.2 0.0 2.9 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.6 gi|289580436|ref|YP_003478902.1| - 0.0085 16.6 0.0 0.035 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|289580436|ref|YP_003478902.1| - 0.014 15.5 0.2 0.047 13.8 0.2 1.9 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) CysG_dimeriser PF10414.9 gi|289580436|ref|YP_003478902.1| - 0.017 14.8 2.0 6.8 6.5 0.4 3.2 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region AAA_3 PF07726.11 gi|289580436|ref|YP_003478902.1| - 0.017 15.0 0.0 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|289580436|ref|YP_003478902.1| - 0.029 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|289580436|ref|YP_003478902.1| - 0.034 14.2 0.0 0.084 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEK_C PF08766.11 gi|289580436|ref|YP_003478902.1| - 0.042 13.8 1.3 0.23 11.4 0.1 2.5 2 0 0 2 2 2 0 DEK C terminal domain TIP49 PF06068.13 gi|289580436|ref|YP_003478902.1| - 0.066 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|289580436|ref|YP_003478902.1| - 0.086 13.3 0.5 0.69 10.3 0.1 2.6 2 1 1 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|289580436|ref|YP_003478902.1| - 0.79 10.0 4.4 3.2 8.0 0.5 3.5 3 1 0 3 3 3 0 AAA domain DUF4255 PF14065.6 gi|289580437|ref|YP_003478903.1| - 1.5e-31 109.4 0.4 1.8e-31 109.2 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) Phage_T4_gp19 PF06841.12 gi|289580438|ref|YP_003478904.1| - 1.2e-38 132.0 0.4 1.4e-38 131.8 0.4 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 FYDLN_acid PF09538.10 gi|289580440|ref|YP_003478906.1| - 0.012 16.3 0.6 0.021 15.5 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0547 PF10571.9 gi|289580440|ref|YP_003478906.1| - 0.024 14.7 0.9 0.043 13.9 0.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|289580440|ref|YP_003478906.1| - 0.12 12.3 0.3 0.25 11.3 0.3 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Phage_T4_gp19 PF06841.12 gi|289580442|ref|YP_003478908.1| - 9.5e-31 106.4 0.0 1.1e-30 106.3 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_sheath_1 PF04984.14 gi|289580443|ref|YP_003478909.1| - 6.3e-29 101.0 0.0 1e-28 100.3 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 gi|289580443|ref|YP_003478909.1| - 9.9e-20 70.5 0.0 1.9e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1N PF17481.2 gi|289580443|ref|YP_003478909.1| - 0.00068 20.1 0.0 0.0035 17.8 0.0 2.3 2 1 0 2 2 2 1 Phage tail sheath protein beta-sandwich domain Spot_14 PF07084.12 gi|289580444|ref|YP_003478910.1| - 0.021 15.0 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Thyroid hormone-inducible hepatic protein Spot 14 Tail_P2_I PF09684.10 gi|289580445|ref|YP_003478911.1| - 1.3e-09 38.1 0.1 3.7e-09 36.6 0.0 1.8 2 0 0 2 2 2 1 Phage tail protein (Tail_P2_I) Tachylectin PF14517.6 gi|289580445|ref|YP_003478911.1| - 0.00017 21.2 0.0 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 Tachylectin PQQ_3 PF13570.6 gi|289580445|ref|YP_003478911.1| - 0.0036 17.7 7.1 0.44 11.1 0.9 4.5 4 0 0 4 4 4 2 PQQ-like domain Nucleoporin_N PF08801.11 gi|289580445|ref|YP_003478911.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Nup133 N terminal like Baseplate_J PF04865.14 gi|289580446|ref|YP_003478912.1| - 8.2e-16 57.9 0.9 2.3e-13 49.9 0.4 2.3 2 0 0 2 2 2 2 Baseplate J-like protein Baseplate_J PF04865.14 gi|289580447|ref|YP_003478913.1| - 5.3e-15 55.3 1.6 5.8e-13 48.6 0.5 2.7 3 0 0 3 3 3 2 Baseplate J-like protein GPW_gp25 PF04965.14 gi|289580448|ref|YP_003478914.1| - 5.2e-25 87.0 0.1 6.1e-25 86.8 0.1 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.8 gi|289580448|ref|YP_003478914.1| - 0.00068 19.7 0.0 0.00086 19.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) PAAR_motif PF05488.13 gi|289580449|ref|YP_003478915.1| - 5.3e-21 74.6 5.6 2.7e-12 46.7 0.8 2.8 1 1 2 3 3 3 3 PAAR motif DUF4150 PF13665.6 gi|289580449|ref|YP_003478915.1| - 0.00015 21.8 0.0 0.031 14.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4150) Phage_base_V PF04717.12 gi|289580450|ref|YP_003478916.1| - 0.0053 16.7 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector DUF3540 PF12059.8 gi|289580450|ref|YP_003478916.1| - 0.0082 16.0 0.1 0.6 9.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3540) DUF2345 PF10106.9 gi|289580450|ref|YP_003478916.1| - 0.17 11.7 0.9 2.5 7.9 0.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2345) Phage_GPD PF05954.11 gi|289580451|ref|YP_003478917.1| - 1.6e-11 44.1 0.1 1.8e-11 43.9 0.1 1.1 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) LysM PF01476.20 gi|289580452|ref|YP_003478918.1| - 2.9e-08 33.6 0.0 6.6e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 LysM domain S_2TMBeta PF18153.1 gi|289580454|ref|YP_003478920.1| - 1.8 8.3 3.5 1.3 8.8 0.2 2.2 2 0 0 2 2 2 0 SMODS-associating 2TM, beta-strand rich effector domain AAA PF00004.29 gi|289580455|ref|YP_003478921.1| - 1.2e-97 323.4 0.0 1.5e-48 164.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289580455|ref|YP_003478921.1| - 4.5e-27 93.6 3.9 7.8e-14 51.2 0.1 3.0 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|289580455|ref|YP_003478921.1| - 2.2e-22 79.0 0.0 1.6e-21 76.3 0.0 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|289580455|ref|YP_003478921.1| - 1.1e-15 58.1 0.0 2.1e-06 27.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|289580455|ref|YP_003478921.1| - 1.2e-15 57.6 0.0 2.7e-07 30.5 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|289580455|ref|YP_003478921.1| - 9.2e-14 52.2 0.4 2.7e-05 24.6 0.0 3.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|289580455|ref|YP_003478921.1| - 2.8e-11 43.8 0.3 0.003 17.8 0.0 3.8 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|289580455|ref|YP_003478921.1| - 3.4e-11 43.5 0.0 0.00072 19.7 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|289580455|ref|YP_003478921.1| - 1e-09 38.5 1.0 0.0055 16.7 0.1 4.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|289580455|ref|YP_003478921.1| - 1.6e-09 37.5 0.0 0.00036 19.9 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|289580455|ref|YP_003478921.1| - 4.1e-09 36.6 0.0 0.0015 18.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|289580455|ref|YP_003478921.1| - 1.6e-08 34.2 0.1 1.1e-07 31.5 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.17 gi|289580455|ref|YP_003478921.1| - 2.8e-08 33.7 0.0 0.0015 18.3 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|289580455|ref|YP_003478921.1| - 1.6e-07 31.7 0.0 0.026 14.9 0.0 2.8 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|289580455|ref|YP_003478921.1| - 1.9e-07 31.7 0.0 0.041 14.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_7 PF12775.7 gi|289580455|ref|YP_003478921.1| - 3.5e-07 29.9 0.0 0.02 14.4 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|289580455|ref|YP_003478921.1| - 4.4e-07 29.3 0.0 0.00085 18.6 0.0 3.1 2 2 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|289580455|ref|YP_003478921.1| - 5.2e-07 29.3 0.1 0.02 14.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|289580455|ref|YP_003478921.1| - 4.9e-06 26.9 0.0 0.16 12.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|289580455|ref|YP_003478921.1| - 6.3e-06 26.2 0.0 0.065 13.2 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|289580455|ref|YP_003478921.1| - 6.7e-06 25.6 0.2 0.4 10.0 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.11 gi|289580455|ref|YP_003478921.1| - 1.1e-05 25.4 0.0 0.11 12.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|289580455|ref|YP_003478921.1| - 1.5e-05 25.5 0.0 0.069 13.7 0.0 2.8 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.26 gi|289580455|ref|YP_003478921.1| - 1.9e-05 24.4 0.0 0.28 10.9 0.0 2.9 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|289580455|ref|YP_003478921.1| - 1.9e-05 24.5 0.0 0.37 10.5 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|289580455|ref|YP_003478921.1| - 2.5e-05 24.1 0.0 0.098 12.4 0.0 2.6 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|289580455|ref|YP_003478921.1| - 3.1e-05 23.4 0.0 0.11 11.6 0.0 2.5 3 0 0 3 3 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|289580455|ref|YP_003478921.1| - 3.2e-05 23.5 0.0 0.11 11.9 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.6 gi|289580455|ref|YP_003478921.1| - 3.4e-05 23.8 0.6 0.25 11.1 0.1 2.6 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|289580455|ref|YP_003478921.1| - 4e-05 22.8 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|289580455|ref|YP_003478921.1| - 4e-05 23.6 0.2 0.3 11.0 0.0 3.6 4 0 0 4 4 4 1 NACHT domain NTPase_1 PF03266.15 gi|289580455|ref|YP_003478921.1| - 5.2e-05 23.2 0.2 1 9.2 0.0 4.4 3 1 1 4 4 4 1 NTPase AAA_25 PF13481.6 gi|289580455|ref|YP_003478921.1| - 6.3e-05 22.6 7.1 0.48 10.0 0.2 4.2 2 2 1 4 4 4 2 AAA domain NB-ARC PF00931.22 gi|289580455|ref|YP_003478921.1| - 0.00023 20.4 0.0 0.5 9.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|289580455|ref|YP_003478921.1| - 0.00029 21.2 0.9 1.8 8.9 0.0 3.5 4 0 0 4 4 3 2 AAA domain Zeta_toxin PF06414.12 gi|289580455|ref|YP_003478921.1| - 0.00049 19.4 0.1 1 8.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Bac_DnaA PF00308.18 gi|289580455|ref|YP_003478921.1| - 0.00078 19.3 0.0 0.14 12.0 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.6 gi|289580455|ref|YP_003478921.1| - 0.0025 17.9 0.0 3.7 7.7 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.6 gi|289580455|ref|YP_003478921.1| - 0.0033 17.9 0.2 2.5 8.5 0.0 3.3 3 0 0 3 3 2 1 AAA domain Cytidylate_kin PF02224.18 gi|289580455|ref|YP_003478921.1| - 0.011 15.5 1.0 5.3 6.7 0.0 3.2 3 0 0 3 3 3 0 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|289580455|ref|YP_003478921.1| - 0.014 15.5 0.0 2.4 8.3 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Vps4_C PF09336.10 gi|289580455|ref|YP_003478921.1| - 0.015 15.2 0.4 0.77 9.8 0.0 2.9 3 0 0 3 3 2 0 Vps4 C terminal oligomerisation domain ATPase_2 PF01637.18 gi|289580455|ref|YP_003478921.1| - 0.018 15.0 0.0 2.9 7.7 0.0 2.9 3 1 0 3 3 2 0 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|289580455|ref|YP_003478921.1| - 0.028 14.4 0.0 5.1 7.1 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|289580455|ref|YP_003478921.1| - 0.033 13.8 0.0 0.84 9.2 0.0 2.7 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Guanylate_kin PF00625.21 gi|289580455|ref|YP_003478921.1| - 0.039 13.6 2.8 33 4.1 0.0 4.7 3 2 2 5 5 5 0 Guanylate kinase AAA_29 PF13555.6 gi|289580455|ref|YP_003478921.1| - 0.041 13.6 0.0 12 5.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|289580455|ref|YP_003478921.1| - 0.051 12.6 0.0 8.2 5.4 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|289580455|ref|YP_003478921.1| - 0.062 13.2 0.0 8.5 6.3 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain Molydop_binding PF01568.21 gi|289580455|ref|YP_003478921.1| - 0.067 13.2 0.0 0.23 11.5 0.0 1.9 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain CPT PF07931.12 gi|289580455|ref|YP_003478921.1| - 0.067 13.0 0.0 7.7 6.3 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.16 gi|289580455|ref|YP_003478921.1| - 0.078 11.8 0.0 7.3 5.4 0.0 3.0 3 0 0 3 3 3 0 AFG1-like ATPase TniB PF05621.11 gi|289580455|ref|YP_003478921.1| - 0.099 12.0 0.0 12 5.3 0.0 2.9 3 0 0 3 3 3 0 Bacterial TniB protein KAP_NTPase PF07693.14 gi|289580455|ref|YP_003478921.1| - 0.11 11.7 0.0 7.4 5.7 0.0 2.8 3 0 0 3 3 3 0 KAP family P-loop domain Torsin PF06309.11 gi|289580455|ref|YP_003478921.1| - 0.13 12.3 0.0 3.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Torsin SKI PF01202.22 gi|289580455|ref|YP_003478921.1| - 0.13 12.3 0.3 12 6.0 0.0 2.7 3 0 0 3 3 2 0 Shikimate kinase Phosphodiest PF01663.22 gi|289580456|ref|YP_003478922.1| - 5.8e-45 154.4 2.1 7.2e-45 154.1 2.1 1.1 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|289580456|ref|YP_003478922.1| - 0.015 14.7 0.0 0.29 10.5 0.0 2.1 1 1 0 1 1 1 0 Sulfatase NAD_binding_5 PF07994.12 gi|289580457|ref|YP_003478923.1| - 7.3e-46 157.0 0.0 5.8e-44 150.8 0.0 2.1 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.17 gi|289580457|ref|YP_003478923.1| - 2.8e-27 95.1 0.0 4.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase TatD_DNase PF01026.21 gi|289580458|ref|YP_003478924.1| - 2e-18 66.7 0.0 2.9e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase Colicin_E5 PF12106.8 gi|289580458|ref|YP_003478924.1| - 0.011 16.1 0.1 0.14 12.4 0.0 2.2 2 0 0 2 2 2 0 Colicin E5 ribonuclease domain Amidohydro_2 PF04909.14 gi|289580458|ref|YP_003478924.1| - 0.098 12.4 6.0 0.97 9.2 6.0 2.4 1 1 0 1 1 1 0 Amidohydrolase AP_endonuc_2 PF01261.24 gi|289580459|ref|YP_003478925.1| - 1.9e-36 125.5 1.9 3.3e-36 124.7 0.7 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|289580459|ref|YP_003478925.1| - 0.021 15.2 0.4 3.9 7.8 0.0 3.1 1 1 1 2 2 2 0 Radical SAM superfamily Pro_dh PF01619.18 gi|289580459|ref|YP_003478925.1| - 0.049 13.2 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 Proline dehydrogenase UbiA PF01040.18 gi|289580460|ref|YP_003478926.1| - 1.1e-19 70.7 31.9 1.1e-19 70.7 31.9 2.1 1 1 1 2 2 2 1 UbiA prenyltransferase family DUF2070 PF09843.9 gi|289580460|ref|YP_003478926.1| - 4.5 5.4 5.9 6.1 5.0 5.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) AP_endonuc_2 PF01261.24 gi|289580461|ref|YP_003478927.1| - 1.5e-41 142.1 0.6 5.1e-41 140.4 0.1 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|289580461|ref|YP_003478927.1| - 0.0075 16.0 0.0 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus DUF5429 PF17494.2 gi|289580461|ref|YP_003478927.1| - 0.022 14.8 0.2 0.056 13.5 0.2 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5429) FAA_hydrolase PF01557.18 gi|289580462|ref|YP_003478928.1| - 4.4e-68 229.2 0.0 5.1e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|289580462|ref|YP_003478928.1| - 0.038 14.9 0.1 0.24 12.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2437) DUF357 PF04010.13 gi|289580463|ref|YP_003478929.1| - 3.5e-31 107.1 0.5 4.1e-31 106.9 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.14 gi|289580464|ref|YP_003478930.1| - 2e-41 142.2 1.9 2.5e-41 141.8 1.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|289580464|ref|YP_003478930.1| - 3.1e-19 68.9 0.0 8.8e-19 67.5 0.0 1.8 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox_3 PF13738.6 gi|289580464|ref|YP_003478930.1| - 4.8e-16 58.9 1.5 1e-13 51.3 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289580464|ref|YP_003478930.1| - 3.3e-14 53.2 2.2 8.5e-14 51.9 0.6 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289580464|ref|YP_003478930.1| - 0.00034 19.8 0.1 0.033 13.3 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 gi|289580464|ref|YP_003478930.1| - 0.00089 19.7 0.0 0.01 16.3 0.1 2.6 3 1 0 3 3 3 1 Putative NAD(P)-binding DUF836 PF05768.14 gi|289580464|ref|YP_003478930.1| - 0.0012 19.2 0.0 0.0031 17.9 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NAD_binding_8 PF13450.6 gi|289580464|ref|YP_003478930.1| - 0.0016 18.6 0.4 0.011 16.0 0.0 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|289580464|ref|YP_003478930.1| - 0.0016 17.2 0.3 1.7 7.2 0.0 2.8 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|289580464|ref|YP_003478930.1| - 0.0029 17.3 6.6 0.091 12.3 0.0 2.8 2 1 1 4 4 4 2 FAD dependent oxidoreductase Thioredoxin_3 PF13192.6 gi|289580464|ref|YP_003478930.1| - 0.0032 17.5 0.0 0.044 13.8 0.0 2.6 2 0 0 2 2 2 1 Thioredoxin domain GST_N_3 PF13417.6 gi|289580464|ref|YP_003478930.1| - 0.0047 17.3 0.0 0.0086 16.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.7 gi|289580464|ref|YP_003478930.1| - 0.0065 15.9 0.2 0.026 13.9 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase SH3BGR PF04908.15 gi|289580464|ref|YP_003478930.1| - 0.014 15.5 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein DUF393 PF04134.12 gi|289580465|ref|YP_003478931.1| - 2.3e-33 115.9 0.1 2.7e-33 115.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Ustilago_mating PF05722.12 gi|289580465|ref|YP_003478931.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Ustilago B locus mating-type protein TetR_C_6 PF13977.6 gi|289580466|ref|YP_003478932.1| - 9.8e-11 41.9 0.6 1.7e-10 41.1 0.6 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|289580466|ref|YP_003478932.1| - 1.4e-08 34.4 0.0 2.9e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 gi|289580466|ref|YP_003478932.1| - 4e-05 23.8 0.3 0.00016 21.8 0.3 2.0 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|289580466|ref|YP_003478932.1| - 0.0003 21.0 0.0 0.00053 20.2 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|289580466|ref|YP_003478932.1| - 0.002 18.4 0.9 0.0038 17.5 0.9 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain NPCBM_assoc PF10633.9 gi|289580467|ref|YP_003478933.1| - 7.2e-15 55.0 10.5 9.6e-05 22.6 0.1 5.2 4 2 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|289580467|ref|YP_003478933.1| - 2.4e-08 34.2 1.5 0.08 13.2 0.0 4.6 4 1 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|289580467|ref|YP_003478933.1| - 3.5e-05 24.0 9.3 0.084 13.2 3.0 4.4 3 2 1 4 4 4 2 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|289580467|ref|YP_003478933.1| - 8.9e-05 21.7 0.0 0.0019 17.3 0.0 2.1 2 0 0 2 2 2 1 PTHB1 C-terminus Fn3-like PF14310.6 gi|289580467|ref|YP_003478933.1| - 0.0028 17.7 1.5 12 6.1 0.0 5.1 6 0 0 6 6 6 1 Fibronectin type III-like domain Alpha_adaptinC2 PF02883.20 gi|289580467|ref|YP_003478933.1| - 0.03 14.6 0.0 0.83 10.0 0.0 3.1 4 0 0 4 4 4 0 Adaptin C-terminal domain Toluene_X PF03349.16 gi|289580467|ref|YP_003478933.1| - 0.033 12.8 0.1 0.066 11.8 0.1 1.4 1 0 0 1 1 1 0 Outer membrane protein transport protein (OMPP1/FadL/TodX) DUF4832 PF16116.5 gi|289580467|ref|YP_003478933.1| - 0.046 13.6 0.1 4.4 7.1 0.0 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4832) FAS_meander PF17951.1 gi|289580467|ref|YP_003478933.1| - 0.061 13.1 0.0 2.8 7.8 0.0 2.5 2 0 0 2 2 2 0 Fatty acid synthase meander beta sheet domain DUF4625 PF15418.6 gi|289580467|ref|YP_003478933.1| - 0.064 13.5 0.0 0.25 11.6 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4625) Ig_GlcNase PF18368.1 gi|289580467|ref|YP_003478933.1| - 0.16 12.2 0.1 14 5.9 0.0 3.4 3 1 0 3 3 3 0 Exo-beta-D-glucosaminidase Ig-fold domain ASH PF15780.5 gi|289580467|ref|YP_003478933.1| - 0.42 10.8 2.5 5.7 7.2 0.3 3.3 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Mucin PF01456.17 gi|289580467|ref|YP_003478933.1| - 8.8 6.3 11.7 0.79 9.7 6.3 2.1 2 0 0 2 2 2 0 Mucin-like glycoprotein MMPL PF03176.15 gi|289580468|ref|YP_003478934.1| - 7.4e-36 123.7 12.6 3.4e-19 69.0 3.8 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|289580468|ref|YP_003478934.1| - 6.6e-12 45.5 9.4 9.9e-06 25.5 0.1 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|289580468|ref|YP_003478934.1| - 5.4e-06 24.8 25.0 0.0024 16.1 7.0 3.0 3 0 0 3 3 3 2 Patched family YdjM PF04307.14 gi|289580469|ref|YP_003478935.1| - 1.1e-09 37.9 11.4 3.6e-09 36.2 11.4 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase BPD_transp_2 PF02653.16 gi|289580469|ref|YP_003478935.1| - 0.0052 16.0 5.6 0.0076 15.4 5.6 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2929 PF11151.8 gi|289580469|ref|YP_003478935.1| - 0.0069 16.7 0.8 0.16 12.3 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2929) DUF4229 PF14012.6 gi|289580469|ref|YP_003478935.1| - 9.2 6.4 12.9 0.46 10.6 2.8 3.3 3 2 0 3 3 3 0 Protein of unknown function (DUF4229) Beta_helix PF13229.6 gi|289580471|ref|YP_003478937.1| - 7.3e-34 116.9 13.9 4.5e-19 68.8 0.3 2.8 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|289580471|ref|YP_003478937.1| - 1.9e-26 92.8 8.6 1.2e-23 83.7 11.1 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) NosL PF05573.12 gi|289580471|ref|YP_003478937.1| - 9.2e-19 68.1 0.2 1.6e-18 67.3 0.2 1.3 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.7 gi|289580471|ref|YP_003478937.1| - 3.8e-07 30.2 4.8 5.6e-06 26.3 0.1 3.0 1 1 1 2 2 2 1 Pectate lyase superfamily protein DUF1565 PF07602.11 gi|289580471|ref|YP_003478937.1| - 0.0024 17.3 10.5 0.011 15.1 10.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) DUF2092 PF09865.9 gi|289580471|ref|YP_003478937.1| - 0.13 11.6 0.0 0.32 10.3 0.0 1.6 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2092) DsbD_2 PF13386.6 gi|289580472|ref|YP_003478938.1| - 2e-51 174.8 16.7 2.4e-51 174.5 16.7 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SCO1-SenC PF02630.14 gi|289580473|ref|YP_003478939.1| - 3.6e-15 56.1 0.0 4.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 gi|289580473|ref|YP_003478939.1| - 0.00031 20.6 0.0 0.00059 19.7 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|289580473|ref|YP_003478939.1| - 0.0065 16.8 0.0 0.064 13.6 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like NosL PF05573.12 gi|289580474|ref|YP_003478940.1| - 5.2e-45 153.0 0.9 6.4e-45 152.7 0.9 1.1 1 0 0 1 1 1 1 NosL NosL PF05573.12 gi|289580475|ref|YP_003478941.1| - 2.6e-17 63.4 1.3 3.8e-17 62.8 1.3 1.2 1 0 0 1 1 1 1 NosL YHS PF04945.13 gi|289580475|ref|YP_003478941.1| - 0.0042 17.2 0.2 0.0092 16.1 0.2 1.5 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|289580475|ref|YP_003478941.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Nop14 PF04147.12 gi|289580475|ref|YP_003478941.1| - 0.8 7.8 3.6 1 7.5 3.6 1.1 1 0 0 1 1 1 0 Nop14-like family DUF4870 PF09685.10 gi|289580476|ref|YP_003478942.1| - 8e-15 54.9 4.9 1.4e-14 54.1 4.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4870) TraG_N PF07916.11 gi|289580476|ref|YP_003478942.1| - 0.024 13.5 3.1 0.029 13.2 3.1 1.1 1 0 0 1 1 1 0 TraG-like protein, N-terminal region DUF2207 PF09972.9 gi|289580476|ref|YP_003478942.1| - 0.033 13.0 1.4 0.038 12.8 1.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_2 PF12679.7 gi|289580476|ref|YP_003478942.1| - 0.65 9.2 6.2 0.68 9.2 0.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF4064 PF13273.6 gi|289580476|ref|YP_003478942.1| - 0.67 10.3 5.9 3.5 7.9 5.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DIM PF08194.12 gi|289580476|ref|YP_003478942.1| - 0.77 10.0 2.9 1.5 9.1 0.1 2.5 2 0 0 2 2 2 0 DIM protein Tetraspanin PF00335.20 gi|289580476|ref|YP_003478942.1| - 1.3 8.7 6.7 4.4 6.9 6.7 1.7 1 1 0 1 1 1 0 Tetraspanin family DDE_Tnp_1 PF01609.21 gi|289580477|ref|YP_003478943.1| - 2.4e-15 56.8 5.5 3.1e-15 56.4 3.5 2.0 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|289580477|ref|YP_003478943.1| - 0.00019 21.5 0.0 0.00032 20.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|289580477|ref|YP_003478943.1| - 0.00048 20.5 1.1 0.0015 18.8 0.6 2.1 2 1 0 2 2 2 1 Transposase DDE domain RNA_pol_N PF01194.17 gi|289580480|ref|YP_003478946.1| - 0.13 12.6 0.1 3.9 7.8 0.0 2.6 2 1 0 2 2 2 0 RNA polymerases N / 8 kDa subunit eRF1_2 PF03464.15 gi|289580483|ref|YP_003478949.1| - 2.4e-25 89.4 0.0 3.7e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|289580483|ref|YP_003478949.1| - 1.9e-20 73.5 4.1 4.7e-20 72.2 4.1 1.8 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|289580483|ref|YP_003478949.1| - 7.8e-17 61.8 1.3 1.4e-16 61.0 1.3 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|289580483|ref|YP_003478949.1| - 2.5e-16 60.2 0.0 1.9e-15 57.3 0.0 2.3 1 1 0 1 1 1 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|289580483|ref|YP_003478949.1| - 0.016 15.3 4.6 0.039 14.0 4.6 1.7 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 CTK3_C PF12350.8 gi|289580483|ref|YP_003478949.1| - 5.4 7.2 6.6 3.7 7.8 3.0 2.2 2 0 0 2 2 2 0 CTD kinase subunit gamma CTK3 C-terminus zinc_ribbon_4 PF13717.6 gi|289580484|ref|YP_003478950.1| - 0.05 13.5 0.3 0.1 12.5 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain FYVE_2 PF02318.16 gi|289580484|ref|YP_003478950.1| - 0.06 13.6 0.2 0.1 12.8 0.2 1.4 1 0 0 1 1 1 0 FYVE-type zinc finger DUF2757 PF10955.8 gi|289580484|ref|YP_003478950.1| - 0.067 13.4 0.4 0.2 11.9 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) DUF530 PF04409.12 gi|289580484|ref|YP_003478950.1| - 0.62 8.4 2.0 1.8 6.8 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF530) DUF4147 PF13660.6 gi|289580486|ref|YP_003478952.1| - 3.8e-78 262.2 3.1 3.1e-77 259.2 3.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|289580486|ref|YP_003478952.1| - 1.3e-30 105.8 4.8 4.1e-30 104.2 4.8 2.0 1 0 0 1 1 1 1 MOFRL family CMD PF02627.20 gi|289580486|ref|YP_003478952.1| - 0.017 15.1 0.8 0.017 15.1 0.8 2.5 3 0 0 3 3 3 0 Carboxymuconolactone decarboxylase family K_oxygenase PF13434.6 gi|289580486|ref|YP_003478952.1| - 0.093 11.9 0.1 0.69 9.0 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Aldedh PF00171.22 gi|289580487|ref|YP_003478953.1| - 1.8e-143 478.4 0.0 2.1e-143 478.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SPOUT_MTase_2 PF14419.6 gi|289580487|ref|YP_003478953.1| - 0.043 13.2 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP IclR PF01614.18 gi|289580488|ref|YP_003478954.1| - 1.6e-35 121.7 0.2 2.8e-35 121.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289580488|ref|YP_003478954.1| - 9.2e-12 44.6 0.1 4.2e-11 42.5 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|289580488|ref|YP_003478954.1| - 5.8e-05 22.9 0.0 0.00018 21.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|289580488|ref|YP_003478954.1| - 7.1e-05 22.6 0.0 0.00017 21.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|289580488|ref|YP_003478954.1| - 0.0001 22.1 0.0 0.00067 19.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|289580488|ref|YP_003478954.1| - 0.00014 21.3 0.0 0.00056 19.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|289580488|ref|YP_003478954.1| - 0.0022 17.9 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_9 PF08221.11 gi|289580488|ref|YP_003478954.1| - 0.003 17.6 0.0 0.0075 16.3 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF4423 PF14394.6 gi|289580488|ref|YP_003478954.1| - 0.0036 17.0 0.0 0.0067 16.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_40 PF14493.6 gi|289580488|ref|YP_003478954.1| - 0.0043 17.5 0.3 0.024 15.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|289580488|ref|YP_003478954.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF1803 PF08820.10 gi|289580488|ref|YP_003478954.1| - 0.016 15.2 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) DUF742 PF05331.11 gi|289580488|ref|YP_003478954.1| - 0.022 14.5 0.0 0.06 13.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF742) HTH_11 PF08279.12 gi|289580488|ref|YP_003478954.1| - 0.035 14.1 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 HTH domain Penicillinase_R PF03965.16 gi|289580488|ref|YP_003478954.1| - 0.035 14.5 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor HTH_20 PF12840.7 gi|289580488|ref|YP_003478954.1| - 0.037 14.1 0.1 0.14 12.3 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289580488|ref|YP_003478954.1| - 0.06 13.0 0.0 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|289580488|ref|YP_003478954.1| - 0.13 12.2 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Arginase PF00491.21 gi|289580489|ref|YP_003478955.1| - 1.9e-72 244.1 2.5 2.6e-72 243.7 2.5 1.2 1 0 0 1 1 1 1 Arginase family BAF1_ABF1 PF04684.13 gi|289580489|ref|YP_003478955.1| - 0.003 16.7 1.5 0.0042 16.2 1.5 1.2 1 0 0 1 1 1 1 BAF1 / ABF1 chromatin reorganising factor DUF87 PF01935.17 gi|289580489|ref|YP_003478955.1| - 0.09 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain SSP160 PF06933.11 gi|289580489|ref|YP_003478955.1| - 0.48 8.6 9.2 0.65 8.1 9.2 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Aminotran_3 PF00202.21 gi|289580490|ref|YP_003478956.1| - 2.5e-80 270.1 0.0 1.2e-79 267.9 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|289580490|ref|YP_003478956.1| - 0.038 13.3 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase ECH_1 PF00378.20 gi|289580491|ref|YP_003478957.1| - 5.3e-53 179.9 0.0 6e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289580491|ref|YP_003478957.1| - 6.3e-32 111.4 0.0 2.2e-29 103.0 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase OrfB_IS605 PF01385.19 gi|289580492|ref|YP_003478958.1| - 8.3e-22 77.7 0.1 1.6e-21 76.8 0.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289580492|ref|YP_003478958.1| - 1.5e-19 69.7 1.0 3.6e-19 68.4 1.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|289580492|ref|YP_003478958.1| - 0.00093 18.6 0.2 0.002 17.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain IclR PF01614.18 gi|289580493|ref|YP_003478959.1| - 1.4e-31 109.0 0.0 2.5e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289580493|ref|YP_003478959.1| - 8.4e-13 47.9 0.1 3.2e-12 46.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|289580493|ref|YP_003478959.1| - 8.5e-07 28.8 0.0 2.2e-05 24.3 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|289580493|ref|YP_003478959.1| - 2.4e-06 27.0 0.0 5.5e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289580493|ref|YP_003478959.1| - 7e-06 25.8 0.0 2e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|289580493|ref|YP_003478959.1| - 3.5e-05 23.6 0.0 0.00024 20.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289580493|ref|YP_003478959.1| - 0.00012 22.1 0.0 0.00037 20.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF742 PF05331.11 gi|289580493|ref|YP_003478959.1| - 0.00012 21.8 0.1 0.0003 20.6 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF742) MarR PF01047.22 gi|289580493|ref|YP_003478959.1| - 0.006 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|289580493|ref|YP_003478959.1| - 0.01 15.8 0.0 0.025 14.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.9 gi|289580493|ref|YP_003478959.1| - 0.041 14.0 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.19 gi|289580493|ref|YP_003478959.1| - 0.047 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|289580493|ref|YP_003478959.1| - 0.07 13.0 0.0 0.27 11.1 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r3 PF04539.16 gi|289580493|ref|YP_003478959.1| - 0.085 13.0 1.1 0.47 10.6 0.0 2.5 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_45 PF14947.6 gi|289580493|ref|YP_003478959.1| - 0.09 12.8 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix ECH_1 PF00378.20 gi|289580494|ref|YP_003478960.1| - 1.9e-41 142.0 0.0 2.3e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289580494|ref|YP_003478960.1| - 3.9e-24 85.8 0.0 4.7e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Acyl-CoA_dh_1 PF00441.24 gi|289580495|ref|YP_003478961.1| - 1.8e-52 177.5 2.9 2.7e-52 177.0 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289580495|ref|YP_003478961.1| - 3.9e-31 108.0 0.1 8.9e-31 106.9 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289580495|ref|YP_003478961.1| - 1.3e-26 92.6 0.1 3.4e-26 91.3 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289580495|ref|YP_003478961.1| - 1.4e-24 86.9 7.1 2.3e-24 86.2 7.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain 3HCDH_N PF02737.18 gi|289580496|ref|YP_003478962.1| - 2.8e-58 196.8 0.2 3.8e-58 196.3 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|289580496|ref|YP_003478962.1| - 4.1e-34 117.1 0.1 2.3e-33 114.7 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|289580496|ref|YP_003478962.1| - 0.0011 19.1 0.4 0.002 18.3 0.2 1.7 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|289580496|ref|YP_003478962.1| - 0.014 15.9 0.0 0.092 13.3 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|289580496|ref|YP_003478962.1| - 0.029 13.7 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|289580496|ref|YP_003478962.1| - 0.072 12.7 0.6 0.16 11.6 0.6 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MM_CoA_mutase PF01642.22 gi|289580497|ref|YP_003478963.1| - 3.9e-214 712.0 0.1 4.4e-214 711.8 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|289580497|ref|YP_003478963.1| - 0.021 13.3 0.1 0.033 12.7 0.1 1.3 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) 2-Hacid_dh_C PF02826.19 gi|289580498|ref|YP_003478964.1| - 3.9e-53 179.5 0.0 4.5e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|289580498|ref|YP_003478964.1| - 0.0026 17.4 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|289580498|ref|YP_003478964.1| - 0.059 13.8 0.0 0.26 11.7 0.0 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XdhC_C PF13478.6 gi|289580498|ref|YP_003478964.1| - 0.11 13.0 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|289580498|ref|YP_003478964.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_transf_3 PF02515.17 gi|289580499|ref|YP_003478965.1| - 3.2e-122 408.2 0.0 3.7e-122 408.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III MR_MLE_C PF13378.6 gi|289580501|ref|YP_003478967.1| - 2.6e-59 200.4 0.2 3.8e-59 199.9 0.2 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|289580501|ref|YP_003478967.1| - 3.8e-14 52.9 0.0 8.3e-14 51.8 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE_C PF13378.6 gi|289580502|ref|YP_003478968.1| - 5.8e-59 199.3 0.2 7.3e-59 199.0 0.2 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|289580502|ref|YP_003478968.1| - 4.6e-19 68.7 0.0 7.8e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_N PF03952.16 gi|289580502|ref|YP_003478968.1| - 0.11 12.7 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Enolase, N-terminal domain DUF362 PF04015.12 gi|289580503|ref|YP_003478969.1| - 7e-06 26.4 0.0 1.2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|289580503|ref|YP_003478969.1| - 0.00048 19.4 0.1 0.00086 18.5 0.1 1.4 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF5035 PF16438.5 gi|289580503|ref|YP_003478969.1| - 0.17 11.7 0.0 0.65 9.9 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF5035) IclR PF01614.18 gi|289580504|ref|YP_003478970.1| - 7e-29 100.3 0.0 1.1e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289580504|ref|YP_003478970.1| - 5.8e-11 42.0 0.8 6.9e-10 38.6 0.2 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289580504|ref|YP_003478970.1| - 1.2e-08 34.7 0.1 2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|289580504|ref|YP_003478970.1| - 5.2e-05 23.1 0.1 0.0001 22.2 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|289580504|ref|YP_003478970.1| - 0.00013 21.7 0.1 0.018 15.0 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289580504|ref|YP_003478970.1| - 0.00069 19.6 1.0 0.0011 19.0 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289580504|ref|YP_003478970.1| - 0.00093 18.7 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|289580504|ref|YP_003478970.1| - 0.0015 18.3 0.1 0.0066 16.3 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|289580504|ref|YP_003478970.1| - 0.026 14.4 0.0 0.19 11.7 0.0 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|289580504|ref|YP_003478970.1| - 0.046 13.9 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|289580504|ref|YP_003478970.1| - 0.063 13.8 0.1 0.12 12.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GAF_2 PF13185.6 gi|289580504|ref|YP_003478970.1| - 0.073 13.4 2.6 0.17 12.1 0.6 2.2 1 1 1 2 2 2 0 GAF domain HTH_45 PF14947.6 gi|289580504|ref|YP_003478970.1| - 0.089 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.12 gi|289580504|ref|YP_003478970.1| - 0.16 11.8 0.3 0.4 10.5 0.1 1.8 2 0 0 2 2 2 0 HTH DNA binding domain adh_short_C2 PF13561.6 gi|289580505|ref|YP_003478971.1| - 4.4e-48 163.9 0.0 6.2e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580505|ref|YP_003478971.1| - 4e-39 134.1 0.0 5.1e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580505|ref|YP_003478971.1| - 4.3e-09 36.5 0.1 6.2e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|289580505|ref|YP_003478971.1| - 0.0055 16.6 0.7 0.0091 15.9 0.6 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|289580505|ref|YP_003478971.1| - 0.02 14.8 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|289580505|ref|YP_003478971.1| - 0.026 15.1 0.6 0.061 13.9 0.2 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Cupin_2 PF07883.11 gi|289580506|ref|YP_003478972.1| - 2.1e-15 56.2 0.1 3e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 Cupin domain CDO_I PF05995.12 gi|289580506|ref|YP_003478972.1| - 0.00012 21.5 0.0 0.0048 16.2 0.0 2.0 1 1 0 1 1 1 1 Cysteine dioxygenase type I AraC_binding PF02311.19 gi|289580506|ref|YP_003478972.1| - 0.00014 21.8 0.0 0.0002 21.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|289580506|ref|YP_003478972.1| - 0.00035 20.2 0.0 0.00055 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HutD PF05962.11 gi|289580506|ref|YP_003478972.1| - 0.0023 17.9 0.0 0.0027 17.7 0.0 1.2 1 0 0 1 1 1 1 HutD MannoseP_isomer PF01050.18 gi|289580506|ref|YP_003478972.1| - 0.0025 17.7 0.0 0.0029 17.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase PCO_ADO PF07847.12 gi|289580506|ref|YP_003478972.1| - 0.0077 15.7 0.0 0.011 15.2 0.0 1.4 1 1 0 1 1 1 1 PCO_ADO FAA_hydrolase PF01557.18 gi|289580507|ref|YP_003478973.1| - 4.2e-51 173.7 0.0 5e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HKR_ArcB_TM PF18415.1 gi|289580508|ref|YP_003478974.1| - 0.36 11.7 8.3 0.59 11.0 8.3 1.3 1 1 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain Usp PF00582.26 gi|289580509|ref|YP_003478975.1| - 9.9e-20 71.5 0.1 1.1e-19 71.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PALP PF00291.25 gi|289580510|ref|YP_003478976.1| - 6.1e-69 232.7 0.6 7.6e-69 232.3 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aminotran_3 PF00202.21 gi|289580511|ref|YP_003478977.1| - 9.6e-95 317.6 0.0 1.2e-94 317.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Metallophos PF00149.28 gi|289580512|ref|YP_003478978.1| - 8.7e-07 29.6 0.2 1.7e-06 28.7 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|289580512|ref|YP_003478978.1| - 2.2e-05 24.7 2.0 7.5e-05 23.0 2.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|289580512|ref|YP_003478978.1| - 0.00012 21.5 0.0 0.00016 21.1 0.0 1.1 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily adh_short_C2 PF13561.6 gi|289580513|ref|YP_003478979.1| - 1.4e-51 175.3 2.6 1.7e-51 175.1 2.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580513|ref|YP_003478979.1| - 8.4e-49 165.7 0.6 1.2e-48 165.2 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580513|ref|YP_003478979.1| - 1.1e-15 58.0 0.3 1.4e-15 57.7 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289580513|ref|YP_003478979.1| - 4.3e-10 39.5 0.0 9.2e-10 38.4 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289580513|ref|YP_003478979.1| - 2.7e-05 23.3 0.6 3.8e-05 22.9 0.6 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289580513|ref|YP_003478979.1| - 7.7e-05 22.2 0.1 0.0001 21.8 0.1 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|289580513|ref|YP_003478979.1| - 0.001 18.3 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|289580513|ref|YP_003478979.1| - 0.0014 18.6 0.5 0.002 18.0 0.5 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|289580513|ref|YP_003478979.1| - 0.0049 16.8 0.3 0.0089 15.9 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|289580513|ref|YP_003478979.1| - 0.0057 15.8 0.1 0.0084 15.2 0.1 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.14 gi|289580513|ref|YP_003478979.1| - 0.092 12.3 0.3 0.18 11.3 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|289580513|ref|YP_003478979.1| - 0.12 12.9 0.1 0.39 11.2 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding HTH_10 PF04967.12 gi|289580514|ref|YP_003478980.1| - 8.4e-17 60.7 0.5 1.2e-16 60.2 0.5 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580514|ref|YP_003478980.1| - 9.6e-10 38.5 0.2 1.5e-09 37.9 0.2 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|289580514|ref|YP_003478980.1| - 0.00052 19.5 0.1 0.0011 18.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|289580514|ref|YP_003478980.1| - 0.001 18.7 0.1 0.0089 15.7 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|289580514|ref|YP_003478980.1| - 0.034 14.0 0.7 0.074 13.0 0.7 1.7 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|289580514|ref|YP_003478980.1| - 0.056 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Exonuc_VII_L PF02601.15 gi|289580514|ref|YP_003478980.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Ribonuc_red_sm PF00268.21 gi|289580515|ref|YP_003478981.1| - 4.5e-07 29.6 0.0 7.2e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain ExoD PF06055.12 gi|289580516|ref|YP_003478982.1| - 0.014 14.8 0.4 0.022 14.1 0.4 1.3 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD AMP-binding PF00501.28 gi|289580517|ref|YP_003478983.1| - 1.7e-85 287.1 0.0 2.2e-85 286.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289580517|ref|YP_003478983.1| - 2.6e-22 79.6 5.6 1.6e-21 77.0 2.1 3.3 4 0 0 4 4 4 1 AMP-binding enzyme C-terminal domain DUF4350 PF14258.6 gi|289580517|ref|YP_003478983.1| - 0.043 14.3 0.0 28 5.2 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) Dpy-30 PF05186.13 gi|289580517|ref|YP_003478983.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Dpy-30 motif adh_short PF00106.25 gi|289580518|ref|YP_003478984.1| - 2.8e-29 102.0 0.0 8.8e-21 74.3 0.0 2.1 2 0 0 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289580518|ref|YP_003478984.1| - 2.9e-24 85.9 0.0 1e-22 80.8 0.0 2.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|289580518|ref|YP_003478984.1| - 6e-10 39.3 0.0 8.1e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 KR domain CoA_binding_3 PF13727.6 gi|289580518|ref|YP_003478984.1| - 0.055 13.5 0.0 0.094 12.7 0.0 1.3 1 0 0 1 1 1 0 CoA-binding domain CoA_binding_2 PF13380.6 gi|289580518|ref|YP_003478984.1| - 0.16 12.5 0.3 0.42 11.1 0.2 1.7 2 0 0 2 2 2 0 CoA binding domain CBAH PF02275.18 gi|289580519|ref|YP_003478985.1| - 2.3e-47 162.2 0.0 3.3e-46 158.4 0.0 1.9 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.16 gi|289580519|ref|YP_003478985.1| - 0.027 14.1 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase VirB3 PF05101.13 gi|289580520|ref|YP_003478986.1| - 0.03 14.5 1.2 0.03 14.5 1.2 2.0 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein MerC PF03203.14 gi|289580520|ref|YP_003478986.1| - 0.041 14.3 4.4 0.049 14.1 4.4 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein DPM3 PF08285.11 gi|289580520|ref|YP_003478986.1| - 0.41 10.9 4.9 0.17 12.1 1.3 1.9 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) RAMP4 PF06624.12 gi|289580520|ref|YP_003478986.1| - 0.45 10.6 2.4 0.45 10.6 1.1 1.7 2 0 0 2 2 2 0 Ribosome associated membrane protein RAMP4 DUF4131 PF13567.6 gi|289580520|ref|YP_003478986.1| - 8.7 6.0 9.2 66 3.1 9.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Spermine_synth PF01564.17 gi|289580522|ref|YP_003478988.1| - 2.7e-09 36.7 0.1 4.3e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|289580522|ref|YP_003478988.1| - 0.022 14.6 0.1 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PAGK PF15284.6 gi|289580522|ref|YP_003478988.1| - 0.26 11.2 0.4 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Phage-encoded virulence factor Polyketide_cyc2 PF10604.9 gi|289580524|ref|YP_003478990.1| - 0.09 13.0 2.3 0.2 11.9 2.3 1.7 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport cobW PF02492.19 gi|289580526|ref|YP_003478992.1| - 4.6e-47 159.9 0.2 6.7e-47 159.3 0.2 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|289580526|ref|YP_003478992.1| - 9.3e-21 73.6 0.0 2.6e-20 72.1 0.0 1.8 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|289580526|ref|YP_003478992.1| - 0.00033 20.3 0.1 0.41 10.1 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|289580526|ref|YP_003478992.1| - 0.0004 20.3 0.1 0.019 14.8 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase TsaE PF02367.17 gi|289580526|ref|YP_003478992.1| - 0.0038 17.2 0.1 0.014 15.4 0.1 1.9 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|289580526|ref|YP_003478992.1| - 0.0054 15.7 0.0 0.0084 15.1 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|289580526|ref|YP_003478992.1| - 0.0062 15.8 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|289580526|ref|YP_003478992.1| - 0.013 15.6 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|289580526|ref|YP_003478992.1| - 0.016 15.6 0.5 0.056 13.8 0.4 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|289580526|ref|YP_003478992.1| - 0.022 14.9 0.4 0.06 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|289580526|ref|YP_003478992.1| - 0.043 12.8 0.2 2.3 7.1 0.0 2.8 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|289580526|ref|YP_003478992.1| - 0.077 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|289580526|ref|YP_003478992.1| - 0.089 11.8 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|289580526|ref|YP_003478992.1| - 0.091 13.3 0.0 0.33 11.5 0.0 1.9 2 0 0 2 2 1 0 ABC transporter PIP5K PF01504.18 gi|289580526|ref|YP_003478992.1| - 0.099 11.8 0.4 0.15 11.3 0.4 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-4-phosphate 5-Kinase SRPRB PF09439.10 gi|289580526|ref|YP_003478992.1| - 0.21 11.0 0.0 0.82 9.1 0.0 2.0 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit SelP_N PF04592.14 gi|289580526|ref|YP_003478992.1| - 1.2 8.4 10.2 2 7.8 10.2 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region TAT_signal PF10518.9 gi|289580527|ref|YP_003478993.1| - 0.77 9.7 4.9 1.4 8.9 4.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TrkA_C PF02080.21 gi|289580527|ref|YP_003478993.1| - 5.3 7.0 5.4 17 5.4 0.1 3.5 4 1 0 4 4 4 0 TrkA-C domain Cytochrom_B559a PF00284.20 gi|289580528|ref|YP_003478994.1| - 0.043 13.6 0.1 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.15 gi|289580529|ref|YP_003478995.1| - 2.4e-69 233.8 0.0 2.9e-69 233.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|289580529|ref|YP_003478995.1| - 1.9e-11 44.2 0.0 3e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|289580529|ref|YP_003478995.1| - 1e-07 32.1 0.0 1.8e-07 31.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|289580529|ref|YP_003478995.1| - 2.7e-05 23.7 0.0 0.0072 15.8 0.0 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|289580529|ref|YP_003478995.1| - 0.0021 17.5 0.0 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|289580529|ref|YP_003478995.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.4 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|289580529|ref|YP_003478995.1| - 0.025 14.2 2.8 0.12 11.9 0.3 2.4 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289580529|ref|YP_003478995.1| - 0.031 14.4 0.9 0.067 13.4 0.0 2.2 3 1 0 3 3 3 0 AAA domain OB_RNB PF08206.11 gi|289580529|ref|YP_003478995.1| - 0.033 13.9 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease B OB domain PhoH PF02562.16 gi|289580529|ref|YP_003478995.1| - 0.038 13.4 0.0 0.072 12.5 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein ATPase PF06745.13 gi|289580529|ref|YP_003478995.1| - 0.051 12.9 0.3 0.095 12.0 0.2 1.5 1 1 0 1 1 1 0 KaiC AAA_26 PF13500.6 gi|289580529|ref|YP_003478995.1| - 0.078 12.8 0.3 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|289580529|ref|YP_003478995.1| - 0.21 11.3 0.1 0.82 9.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain CstA PF02554.14 gi|289580530|ref|YP_003478996.1| - 1e-102 343.9 26.6 1e-102 343.9 26.6 2.5 2 2 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|289580530|ref|YP_003478996.1| - 4.4e-31 107.7 3.8 4.4e-31 107.7 3.8 4.0 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA DUF716 PF04819.12 gi|289580530|ref|YP_003478996.1| - 0.29 10.8 4.8 1.1 8.9 3.1 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF716) MMR_HSR1_C PF08438.10 gi|289580533|ref|YP_003478999.1| - 5.7e-30 104.2 0.0 1.1e-29 103.3 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|289580533|ref|YP_003478999.1| - 4e-21 75.2 0.0 8.9e-19 67.7 0.0 3.2 2 2 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|289580533|ref|YP_003478999.1| - 1.8e-08 34.3 0.0 4.5e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|289580533|ref|YP_003478999.1| - 7.3e-07 28.8 0.0 0.00039 20.0 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B NOG1 PF06858.14 gi|289580533|ref|YP_003478999.1| - 0.0039 16.9 0.1 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) GTP_EFTU PF00009.27 gi|289580533|ref|YP_003478999.1| - 0.034 13.7 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|289580533|ref|YP_003478999.1| - 0.044 13.9 0.1 0.53 10.3 0.0 2.6 3 0 0 3 3 3 0 Dynamin family YchF-GTPase_C PF06071.13 gi|289580533|ref|YP_003478999.1| - 0.079 13.2 0.0 4 7.7 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) RsgA_GTPase PF03193.16 gi|289580533|ref|YP_003478999.1| - 0.21 11.5 0.2 11 5.9 0.1 2.4 2 0 0 2 2 2 0 RsgA GTPase Phage_holin_3_6 PF07332.11 gi|289580534|ref|YP_003479000.1| - 0.0058 16.7 6.9 0.0068 16.4 6.9 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Shisa PF13908.6 gi|289580534|ref|YP_003479000.1| - 0.061 13.6 0.0 0.069 13.4 0.0 1.0 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF3377 PF11857.8 gi|289580534|ref|YP_003479000.1| - 0.073 13.0 1.7 1.2 9.2 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3377) Orf78 PF06024.12 gi|289580534|ref|YP_003479000.1| - 0.14 12.4 0.0 0.28 11.5 0.0 1.5 2 0 0 2 2 2 0 Orf78 (ac78) Ferric_reduct PF01794.19 gi|289580534|ref|YP_003479000.1| - 0.21 11.7 3.8 0.49 10.5 3.8 1.6 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF2207 PF09972.9 gi|289580534|ref|YP_003479000.1| - 1.4 7.6 3.4 0.73 8.5 0.2 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Aminotran_5 PF00266.19 gi|289580535|ref|YP_003479001.1| - 3.7e-22 78.8 0.0 4.9e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|289580535|ref|YP_003479001.1| - 0.0013 18.0 0.0 0.014 14.6 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|289580535|ref|YP_003479001.1| - 0.0086 14.7 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Trypsin PF00089.26 gi|289580537|ref|YP_003479003.1| - 0.02 14.7 0.5 0.042 13.7 0.5 1.5 1 1 0 1 1 1 0 Trypsin DDE_Tnp_IS240 PF13610.6 gi|289580538|ref|YP_003479004.1| - 1.3e-20 74.0 0.1 1.9e-20 73.5 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|289580538|ref|YP_003479004.1| - 1.1e-06 28.3 3.0 2e-06 27.4 3.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|289580538|ref|YP_003479004.1| - 0.0017 18.5 0.0 0.0026 18.0 0.0 1.5 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|289580538|ref|YP_003479004.1| - 0.014 15.5 2.7 0.21 11.6 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) HTH_29 PF13551.6 gi|289580538|ref|YP_003479004.1| - 0.1 12.7 0.5 17 5.6 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Lactamase_B_2 PF12706.7 gi|289580539|ref|YP_003479005.1| - 1.4e-16 60.6 0.4 1.7e-16 60.4 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289580539|ref|YP_003479005.1| - 2.6e-13 50.4 3.2 4.5e-13 49.7 2.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|289580539|ref|YP_003479005.1| - 0.0016 18.0 0.0 0.022 14.4 0.0 2.3 2 0 0 2 2 2 1 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|289580539|ref|YP_003479005.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain MMPL PF03176.15 gi|289580540|ref|YP_003479006.1| - 4e-24 85.2 55.3 8.2e-15 54.6 1.0 5.7 3 1 1 4 4 4 3 MMPL family Patched PF02460.18 gi|289580540|ref|YP_003479006.1| - 5.7e-05 21.4 17.6 0.00023 19.4 6.6 3.1 2 1 1 3 3 3 3 Patched family Sterol-sensing PF12349.8 gi|289580540|ref|YP_003479006.1| - 0.0014 18.4 13.8 0.14 12.0 5.2 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation RseC_MucC PF04246.12 gi|289580540|ref|YP_003479006.1| - 1.4 8.9 10.1 2.4 8.1 0.4 3.2 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Spc7 PF08317.11 gi|289580540|ref|YP_003479006.1| - 3.4 6.4 20.3 0.048 12.5 3.8 2.7 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF3552 PF12072.8 gi|289580540|ref|YP_003479006.1| - 3.6 6.9 25.1 0.21 11.0 6.6 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3552) TrmB PF01978.19 gi|289580541|ref|YP_003479007.1| - 7e-19 67.5 0.0 1.2e-18 66.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|289580541|ref|YP_003479007.1| - 4.8e-05 23.1 0.1 0.0001 22.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|289580541|ref|YP_003479007.1| - 0.00069 19.7 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|289580541|ref|YP_003479007.1| - 0.0032 17.3 0.2 0.0068 16.3 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|289580541|ref|YP_003479007.1| - 0.0097 15.9 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Penicillinase_R PF03965.16 gi|289580541|ref|YP_003479007.1| - 0.025 14.9 0.6 0.38 11.1 0.0 2.5 2 1 1 3 3 3 0 Penicillinase repressor HTH_27 PF13463.6 gi|289580541|ref|YP_003479007.1| - 0.032 14.7 0.0 0.084 13.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain SbcCD_C PF13558.6 gi|289580541|ref|YP_003479007.1| - 0.06 13.6 0.0 14 6.0 0.0 2.5 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MASE1 PF05231.14 gi|289580542|ref|YP_003479008.1| - 0.036 13.2 3.3 0.046 12.9 3.3 1.3 1 0 0 1 1 1 0 MASE1 eRF1_1 PF03463.15 gi|289580543|ref|YP_003479009.1| - 1.1e-24 86.9 0.0 1.7e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|289580543|ref|YP_003479009.1| - 6.9e-24 84.5 0.1 2.1e-23 82.9 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|289580543|ref|YP_003479009.1| - 6.1e-08 33.1 0.1 2.5e-06 27.8 0.1 2.3 1 1 0 1 1 1 1 eRF1 domain 2 Phage_r1t_holin PF16945.5 gi|289580544|ref|YP_003479010.1| - 2.8 8.2 15.9 2.5 8.4 6.4 2.4 2 0 0 2 2 2 0 Putative lactococcus lactis phage r1t holin Amidase_2 PF01510.25 gi|289580545|ref|YP_003479011.1| - 1.5e-18 67.5 3.5 3.2e-18 66.4 3.5 1.5 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase TAT_signal PF10518.9 gi|289580545|ref|YP_003479011.1| - 0.012 15.4 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FbpA PF05833.11 gi|289580546|ref|YP_003479012.1| - 4.6e-75 253.1 0.0 1.8e-74 251.2 0.0 1.7 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|289580546|ref|YP_003479012.1| - 5.4e-24 84.9 0.0 1.2e-23 83.8 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|289580546|ref|YP_003479012.1| - 0.00038 20.6 0.0 0.0019 18.4 0.0 2.2 2 1 0 2 2 2 1 NFACT protein RNA binding domain Ribosomal_S13 PF00416.22 gi|289580546|ref|YP_003479012.1| - 0.067 13.6 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S13/S18 DUF4611 PF15387.6 gi|289580546|ref|YP_003479012.1| - 0.58 10.4 12.4 0.61 10.3 4.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) CPBP PF02517.16 gi|289580548|ref|YP_003479014.1| - 1.2e-12 48.0 8.2 1.2e-12 48.0 8.2 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease TENA_THI-4 PF03070.16 gi|289580549|ref|YP_003479015.1| - 3.9e-48 164.0 1.8 4.4e-48 163.9 1.8 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.6 gi|289580549|ref|YP_003479015.1| - 0.052 13.3 2.3 0.079 12.7 2.3 1.3 1 0 0 1 1 1 0 Iron-containing redox enzyme FancD2 PF14631.6 gi|289580549|ref|YP_003479015.1| - 0.21 9.0 0.0 0.25 8.7 0.0 1.0 1 0 0 1 1 1 0 Fanconi anaemia protein FancD2 nuclease Zip PF02535.22 gi|289580550|ref|YP_003479016.1| - 1e-14 54.5 1.6 1e-14 54.5 1.6 2.1 2 0 0 2 2 2 1 ZIP Zinc transporter HpcH_HpaI PF03328.14 gi|289580551|ref|YP_003479017.1| - 2.4e-41 141.3 0.6 2.9e-41 141.0 0.6 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PEP_mutase PF13714.6 gi|289580551|ref|YP_003479017.1| - 0.0021 17.5 1.7 0.58 9.6 0.0 3.7 3 1 1 4 4 4 1 Phosphoenolpyruvate phosphomutase Radical_SAM_C PF16199.5 gi|289580552|ref|YP_003479018.1| - 1.5e-26 92.2 0.0 2.6e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|289580552|ref|YP_003479018.1| - 5.5e-25 88.7 0.1 1.4e-24 87.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|289580552|ref|YP_003479018.1| - 4.6e-10 39.8 0.1 1.1e-09 38.5 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289580552|ref|YP_003479018.1| - 7.7e-06 25.9 0.3 1.7e-05 24.8 0.3 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289580552|ref|YP_003479018.1| - 0.067 13.6 0.6 0.14 12.6 0.6 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain eIF3m_C_helix PF18005.1 gi|289580552|ref|YP_003479018.1| - 2.5 7.9 3.7 14 5.5 0.5 2.3 2 0 0 2 2 2 0 eIF3 subunit M, C-terminal helix Radial_spoke_3 PF06098.11 gi|289580553|ref|YP_003479019.1| - 0.028 13.7 0.2 0.031 13.6 0.2 1.0 1 0 0 1 1 1 0 Radial spoke protein 3 STAC2_u1 PF16664.5 gi|289580553|ref|YP_003479019.1| - 0.11 12.9 3.8 0.13 12.7 3.8 1.2 1 0 0 1 1 1 0 Unstructured on SH3 and cysteine-rich domain-containing protein 2 Eapp_C PF10238.9 gi|289580553|ref|YP_003479019.1| - 0.12 12.4 2.6 0.16 12.0 2.6 1.1 1 0 0 1 1 1 0 E2F-associated phosphoprotein DUF1754 PF08555.10 gi|289580553|ref|YP_003479019.1| - 1.2 10.0 6.9 1.6 9.5 6.9 1.1 1 0 0 1 1 1 0 Eukaryotic family of unknown function (DUF1754) HTH_10 PF04967.12 gi|289580554|ref|YP_003479020.1| - 1.3e-16 60.1 0.1 2.3e-16 59.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580554|ref|YP_003479020.1| - 3.5e-13 49.7 0.1 5.9e-13 49.0 0.1 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|289580554|ref|YP_003479020.1| - 0.00074 19.0 0.1 0.0013 18.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|289580554|ref|YP_003479020.1| - 0.0008 18.9 0.1 0.0027 17.2 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|289580554|ref|YP_003479020.1| - 0.0013 18.5 0.2 0.0098 15.7 0.1 2.2 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|289580554|ref|YP_003479020.1| - 0.0023 17.8 0.2 0.0053 16.6 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|289580554|ref|YP_003479020.1| - 0.0034 17.2 0.1 0.0075 16.1 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289580554|ref|YP_003479020.1| - 0.019 14.6 0.2 0.084 12.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|289580554|ref|YP_003479020.1| - 0.041 14.0 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_1 PF00126.27 gi|289580554|ref|YP_003479020.1| - 0.082 12.9 0.3 0.15 12.0 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|289580554|ref|YP_003479020.1| - 0.095 12.7 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain SHOCT PF09851.9 gi|289580555|ref|YP_003479021.1| - 1.3e-07 31.1 3.1 2.2e-07 30.4 3.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain TrwC PF08751.11 gi|289580555|ref|YP_003479021.1| - 0.00022 20.9 3.6 0.00027 20.6 3.6 1.2 1 0 0 1 1 1 1 TrwC relaxase DUF1707 PF08044.11 gi|289580555|ref|YP_003479021.1| - 0.011 15.8 6.1 0.012 15.6 3.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) DUF2852 PF11014.8 gi|289580555|ref|YP_003479021.1| - 0.037 14.2 1.5 0.058 13.6 0.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2852) DUF737 PF05300.11 gi|289580555|ref|YP_003479021.1| - 0.15 12.4 8.3 0.2 12.0 8.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF737) MCM3AP_GANP PF16769.5 gi|289580555|ref|YP_003479021.1| - 0.19 9.9 3.9 0.25 9.5 3.9 1.0 1 0 0 1 1 1 0 MCM3AP domain of GANP DUF2502 PF10697.9 gi|289580555|ref|YP_003479021.1| - 0.5 10.7 0.1 0.5 10.7 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2502) DUF5423 PF17461.2 gi|289580555|ref|YP_003479021.1| - 1.4 7.7 12.2 1.9 7.3 12.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5423) DUF3099 PF11298.8 gi|289580555|ref|YP_003479021.1| - 1.6 9.0 3.5 0.51 10.5 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) tRNA_anti-codon PF01336.25 gi|289580556|ref|YP_003479022.1| - 2.4e-10 40.3 0.1 5.5e-10 39.1 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|289580556|ref|YP_003479022.1| - 1.5e-08 34.8 0.0 3.7e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|289580556|ref|YP_003479022.1| - 6.7e-05 23.0 0.0 0.00015 21.9 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain BOF PF04076.13 gi|289580556|ref|YP_003479022.1| - 0.0038 17.2 0.7 0.014 15.5 0.7 2.0 1 0 0 1 1 1 1 Bacterial OB fold (BOF) protein S1_2 PF13509.6 gi|289580556|ref|YP_003479022.1| - 0.054 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 S1 domain Macoilin PF09726.9 gi|289580556|ref|YP_003479022.1| - 0.27 9.7 0.9 0.54 8.8 0.9 1.4 1 0 0 1 1 1 0 Macoilin family DUF4972 PF16342.5 gi|289580557|ref|YP_003479023.1| - 0.068 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4972) Tcp10_C PF07202.13 gi|289580557|ref|YP_003479023.1| - 0.11 12.4 0.2 2.5 8.0 0.2 2.1 1 1 1 2 2 2 0 T-complex protein 10 C-terminus FAD_binding_9 PF08021.11 gi|289580557|ref|YP_003479023.1| - 0.18 12.1 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Siderophore-interacting FAD-binding domain Lactamase_B_3 PF13483.6 gi|289580558|ref|YP_003479024.1| - 5.6e-19 68.6 0.2 7.4e-19 68.2 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|289580558|ref|YP_003479024.1| - 1.2e-15 57.5 1.7 1.3e-15 57.5 1.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289580558|ref|YP_003479024.1| - 5.5e-09 36.3 5.4 3e-08 33.9 5.1 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Ribosomal_L12_N PF16320.5 gi|289580558|ref|YP_003479024.1| - 0.0031 17.2 0.1 0.0054 16.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L7/L12 dimerisation domain OsmC PF02566.19 gi|289580559|ref|YP_003479025.1| - 4.5e-11 43.1 0.0 6.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Hexapep PF00132.24 gi|289580560|ref|YP_003479026.1| - 2.4e-16 58.7 4.1 3.4e-07 29.7 1.8 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289580560|ref|YP_003479026.1| - 1.8e-05 24.4 2.1 1.8e-05 24.4 2.1 2.6 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|289580560|ref|YP_003479026.1| - 0.023 13.6 0.0 0.073 12.0 0.0 1.7 1 1 0 1 1 1 0 L-fucokinase NUP50 PF08911.11 gi|289580561|ref|YP_003479027.1| - 2.1 9.1 7.3 17 6.2 2.1 2.5 2 1 0 2 2 2 0 NUP50 (Nucleoporin 50 kDa) VAPB_antitox PF02697.14 gi|289580562|ref|YP_003479028.1| - 0.0009 20.0 0.6 0.001 19.8 0.6 1.0 1 0 0 1 1 1 1 Putative antitoxin HTH_39 PF14090.6 gi|289580563|ref|YP_003479029.1| - 0.04 13.7 0.0 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Apocytochr_F_C PF01333.19 gi|289580563|ref|YP_003479029.1| - 0.16 12.0 0.2 0.22 11.6 0.2 1.2 1 0 0 1 1 1 0 Apocytochrome F, C-terminal 4HBT PF03061.22 gi|289580564|ref|YP_003479030.1| - 0.026 14.9 0.0 5.3 7.5 0.0 2.9 2 0 0 2 2 2 0 Thioesterase superfamily PAS_7 PF12860.7 gi|289580564|ref|YP_003479030.1| - 0.05 13.8 7.6 0.059 13.5 0.0 3.9 3 0 0 3 3 3 0 PAS fold SAPS PF04499.15 gi|289580565|ref|YP_003479031.1| - 0.14 10.9 1.0 0.13 11.0 1.0 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Mucin PF01456.17 gi|289580565|ref|YP_003479031.1| - 3.3 7.7 30.2 5 7.1 30.2 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein BioY PF02632.14 gi|289580566|ref|YP_003479032.1| - 6e-35 120.2 17.9 6e-35 120.2 17.9 1.4 2 0 0 2 2 2 1 BioY family ECF_trnsprt PF12822.7 gi|289580566|ref|YP_003479032.1| - 0.00025 21.2 21.5 0.00035 20.7 21.5 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF2269 PF10027.9 gi|289580566|ref|YP_003479032.1| - 0.037 14.1 5.5 0.095 12.7 0.6 2.5 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) CybS PF05328.12 gi|289580566|ref|YP_003479032.1| - 0.042 13.5 0.3 0.08 12.6 0.3 1.4 1 0 0 1 1 1 0 CybS, succinate dehydrogenase cytochrome B small subunit ABC_tran PF00005.27 gi|289580567|ref|YP_003479033.1| - 4.5e-29 101.7 0.0 5.7e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289580567|ref|YP_003479033.1| - 2.6e-09 37.3 0.0 0.0018 18.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289580567|ref|YP_003479033.1| - 4.6e-05 23.0 0.0 0.00016 21.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|289580567|ref|YP_003479033.1| - 0.00016 21.8 0.1 0.0033 17.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|289580567|ref|YP_003479033.1| - 0.00028 21.3 0.3 0.00051 20.5 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|289580567|ref|YP_003479033.1| - 0.00066 19.4 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289580567|ref|YP_003479033.1| - 0.0054 17.3 0.0 0.0076 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|289580567|ref|YP_003479033.1| - 0.0067 15.7 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 gi|289580567|ref|YP_003479033.1| - 0.0085 15.7 0.3 0.039 13.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|289580567|ref|YP_003479033.1| - 0.021 15.0 0.1 0.048 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|289580567|ref|YP_003479033.1| - 0.024 14.6 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 gi|289580567|ref|YP_003479033.1| - 0.026 14.2 0.0 0.065 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 gi|289580567|ref|YP_003479033.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|289580567|ref|YP_003479033.1| - 0.04 13.0 0.0 0.065 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|289580567|ref|YP_003479033.1| - 0.044 13.5 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|289580567|ref|YP_003479033.1| - 0.055 13.8 0.1 0.1 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|289580567|ref|YP_003479033.1| - 0.074 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289580567|ref|YP_003479033.1| - 0.092 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|289580567|ref|YP_003479033.1| - 0.14 9.6 0.1 0.19 9.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.16 gi|289580568|ref|YP_003479034.1| - 6e-17 62.0 4.3 8.4e-17 61.5 4.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein RHH_1 PF01402.21 gi|289580569|ref|YP_003479035.1| - 1.7e-09 37.2 0.4 6.3e-09 35.5 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|289580569|ref|YP_003479035.1| - 0.0005 20.2 0.0 0.0007 19.7 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|289580569|ref|YP_003479035.1| - 0.11 12.4 0.8 0.19 11.6 0.2 1.7 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ParE_toxin PF05016.15 gi|289580570|ref|YP_003479036.1| - 0.004 17.7 0.1 0.0052 17.4 0.1 1.3 1 1 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PGF-CTERM PF18204.1 gi|289580571|ref|YP_003479037.1| - 1.4e-06 28.0 5.9 3.3e-06 26.9 5.9 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Lipoprotein_9 PF03180.14 gi|289580571|ref|YP_003479037.1| - 0.005 16.0 0.8 0.01 14.9 0.8 1.5 1 0 0 1 1 1 1 NLPA lipoprotein Invasin_D3 PF09134.10 gi|289580571|ref|YP_003479037.1| - 0.018 15.3 0.1 0.018 15.3 0.1 4.2 3 1 1 4 4 4 0 Invasin, domain 3 DUF1616 PF07760.11 gi|289580571|ref|YP_003479037.1| - 0.64 9.3 8.9 0.21 10.9 1.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1616) RHH_1 PF01402.21 gi|289580573|ref|YP_003479039.1| - 0.00055 19.8 3.1 0.0018 18.1 0.6 2.7 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family CcdA PF07362.12 gi|289580573|ref|YP_003479039.1| - 0.0045 17.4 0.3 0.0049 17.3 0.3 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|289580573|ref|YP_003479039.1| - 0.0059 17.3 3.0 0.009 16.8 3.1 1.5 1 1 0 1 1 1 1 Rv0623-like transcription factor DUF1870 PF08965.10 gi|289580573|ref|YP_003479039.1| - 0.018 15.1 0.2 0.021 14.9 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) Pup PF05639.11 gi|289580573|ref|YP_003479039.1| - 0.029 15.3 4.5 0.042 14.8 4.5 1.4 1 0 0 1 1 1 0 Pup-like protein Pox_VLTF3 PF04947.14 gi|289580573|ref|YP_003479039.1| - 0.029 14.1 0.3 0.032 14.0 0.3 1.1 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Flu_NP PF00506.18 gi|289580573|ref|YP_003479039.1| - 0.11 11.1 2.0 0.12 11.0 2.0 1.0 1 0 0 1 1 1 0 Influenza virus nucleoprotein G-gamma PF00631.22 gi|289580573|ref|YP_003479039.1| - 0.16 12.0 2.3 0.52 10.4 0.1 2.1 1 1 1 2 2 2 0 GGL domain IDEAL PF08858.10 gi|289580573|ref|YP_003479039.1| - 9.8 6.0 8.9 0.36 10.6 1.2 2.4 2 1 1 3 3 3 0 IDEAL domain PIN PF01850.21 gi|289580574|ref|YP_003479040.1| - 1.4e-07 32.0 1.5 1.7e-07 31.8 1.5 1.1 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|289580574|ref|YP_003479040.1| - 0.022 15.1 0.5 0.034 14.4 0.5 1.4 1 0 0 1 1 1 0 PIN like domain PIN_4 PF13638.6 gi|289580574|ref|YP_003479040.1| - 0.032 14.5 0.1 0.037 14.3 0.1 1.2 1 0 0 1 1 1 0 PIN domain Met_10 PF02475.16 gi|289580575|ref|YP_003479041.1| - 2.1e-56 190.8 0.0 2.7e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|289580575|ref|YP_003479041.1| - 3.1e-12 46.2 0.0 9.1e-12 44.7 0.0 1.8 2 0 0 2 2 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|289580575|ref|YP_003479041.1| - 1.3e-08 35.4 0.0 3.7e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|289580575|ref|YP_003479041.1| - 6.4e-07 29.1 0.0 9.5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|289580575|ref|YP_003479041.1| - 8.8e-06 25.6 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|289580575|ref|YP_003479041.1| - 9.1e-06 25.3 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|289580575|ref|YP_003479041.1| - 0.00024 20.6 0.1 0.00037 20.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|289580575|ref|YP_003479041.1| - 0.00028 20.6 0.0 0.00049 19.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|289580575|ref|YP_003479041.1| - 0.00029 20.6 0.0 0.00053 19.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|289580575|ref|YP_003479041.1| - 0.00032 21.3 0.0 0.00088 19.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|289580575|ref|YP_003479041.1| - 0.0047 17.9 0.0 0.013 16.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|289580575|ref|YP_003479041.1| - 0.0093 15.2 0.1 0.013 14.7 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_12 PF08242.12 gi|289580575|ref|YP_003479041.1| - 0.016 15.9 0.0 0.081 13.7 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580575|ref|YP_003479041.1| - 0.028 14.3 0.0 0.085 12.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|289580575|ref|YP_003479041.1| - 0.033 13.8 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|289580575|ref|YP_003479041.1| - 0.059 12.7 0.0 0.089 12.1 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase SRP54_N PF02881.19 gi|289580575|ref|YP_003479041.1| - 0.36 11.1 2.6 3.5 7.9 0.3 2.5 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain Rieske PF00355.26 gi|289580576|ref|YP_003479042.1| - 2e-08 34.0 0.1 2.7e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FTO_NTD PF12933.7 gi|289580576|ref|YP_003479042.1| - 0.02 14.1 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 FTO catalytic domain AroM PF07302.11 gi|289580576|ref|YP_003479042.1| - 0.088 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 AroM protein TP_methylase PF00590.20 gi|289580577|ref|YP_003479043.1| - 9.8e-21 74.7 2.1 1.3e-20 74.3 2.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Iso_dh PF00180.20 gi|289580578|ref|YP_003479044.1| - 7.5e-91 304.9 0.1 8.4e-91 304.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase VKG_Carbox PF05090.14 gi|289580579|ref|YP_003479045.1| - 2.9e-13 49.5 0.0 4.7e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase Aconitase_C PF00694.19 gi|289580580|ref|YP_003479046.1| - 8.9e-19 68.1 0.0 1.5e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|289580581|ref|YP_003479047.1| - 1.5e-145 485.8 0.0 1.6e-145 485.6 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|289580581|ref|YP_003479047.1| - 0.0016 17.3 0.0 0.0027 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) IlvN PF07991.12 gi|289580583|ref|YP_003479049.1| - 2.1e-70 235.6 0.2 2.8e-70 235.2 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|289580583|ref|YP_003479049.1| - 7.3e-63 211.2 0.2 9.9e-63 210.7 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|289580583|ref|YP_003479049.1| - 1.8e-06 28.2 0.0 3.4e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|289580583|ref|YP_003479049.1| - 3.2e-06 27.6 0.0 7.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|289580583|ref|YP_003479049.1| - 5.7e-06 25.8 0.0 1.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|289580583|ref|YP_003479049.1| - 0.0054 16.4 0.1 0.0097 15.6 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|289580583|ref|YP_003479049.1| - 0.014 15.7 0.1 0.037 14.3 0.1 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain AdoHcyase_NAD PF00670.21 gi|289580583|ref|YP_003479049.1| - 0.11 12.6 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|289580583|ref|YP_003479049.1| - 0.12 13.2 0.1 0.25 12.2 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ALS_ss_C PF10369.9 gi|289580584|ref|YP_003479050.1| - 3.6e-21 75.2 0.0 6.3e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|289580584|ref|YP_003479050.1| - 2.8e-15 55.9 0.0 5.3e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|289580584|ref|YP_003479050.1| - 6.1e-13 48.3 0.2 1.5e-12 47.1 0.1 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|289580584|ref|YP_003479050.1| - 0.0033 18.0 0.0 0.0061 17.1 0.0 1.5 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|289580585|ref|YP_003479051.1| - 4.9e-52 176.0 0.5 2.7e-51 173.6 0.3 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289580585|ref|YP_003479051.1| - 2.4e-51 173.5 0.0 7.4e-51 171.9 0.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|289580585|ref|YP_003479051.1| - 7.3e-46 155.3 0.3 1.9e-45 154.0 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|289580585|ref|YP_003479051.1| - 0.00082 19.2 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.19 gi|289580586|ref|YP_003479052.1| - 1.9e-80 270.2 5.7 2.9e-80 269.6 5.7 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|289580586|ref|YP_003479052.1| - 0.0054 16.2 1.3 0.016 14.6 0.1 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel HTH_24 PF13412.6 gi|289580587|ref|YP_003479053.1| - 6.9e-17 60.7 0.1 1.5e-16 59.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|289580587|ref|YP_003479053.1| - 7.7e-16 57.7 0.2 1.8e-15 56.4 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|289580587|ref|YP_003479053.1| - 1e-06 28.5 0.0 2.2e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289580587|ref|YP_003479053.1| - 1.4e-05 25.1 0.0 3.8e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289580587|ref|YP_003479053.1| - 2.1e-05 24.3 0.1 9.9e-05 22.2 0.0 2.1 1 1 1 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|289580587|ref|YP_003479053.1| - 5e-05 23.2 0.0 9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|289580587|ref|YP_003479053.1| - 0.00014 21.9 0.0 0.00044 20.3 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|289580587|ref|YP_003479053.1| - 0.00063 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|289580587|ref|YP_003479053.1| - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|289580587|ref|YP_003479053.1| - 0.00075 19.4 0.0 0.0044 16.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 gi|289580587|ref|YP_003479053.1| - 0.0053 16.4 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_23 PF13384.6 gi|289580587|ref|YP_003479053.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain ATPase-cat_bd PF12156.8 gi|289580587|ref|YP_003479053.1| - 0.011 16.4 2.6 0.021 15.5 2.6 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.10 gi|289580587|ref|YP_003479053.1| - 0.02 15.2 4.2 0.032 14.5 4.2 1.3 1 0 0 1 1 1 0 Archaeal TRASH domain Ta0938 PF11494.8 gi|289580587|ref|YP_003479053.1| - 0.021 15.1 0.9 0.034 14.4 0.9 1.3 1 0 0 1 1 1 0 Ta0938 LexA_DNA_bind PF01726.16 gi|289580587|ref|YP_003479053.1| - 0.022 14.5 0.0 0.044 13.6 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Mga PF08280.11 gi|289580587|ref|YP_003479053.1| - 0.026 14.5 0.0 0.084 12.9 0.0 1.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DprA_WH PF17782.1 gi|289580587|ref|YP_003479053.1| - 0.042 14.0 2.2 0.045 13.9 0.3 2.0 2 0 0 2 2 2 0 DprA winged helix domain zf-FCS PF06467.14 gi|289580587|ref|YP_003479053.1| - 0.043 13.8 3.6 0.078 12.9 3.6 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF501 PF04417.12 gi|289580587|ref|YP_003479053.1| - 0.05 13.4 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF501) HTH_11 PF08279.12 gi|289580587|ref|YP_003479053.1| - 0.056 13.4 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 gi|289580587|ref|YP_003479053.1| - 0.14 12.0 0.0 0.53 10.2 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Ferritin PF00210.24 gi|289580588|ref|YP_003479054.1| - 1.3e-24 86.7 1.0 1.5e-24 86.5 1.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|289580588|ref|YP_003479054.1| - 5.7e-10 39.7 1.3 6.7e-10 39.5 1.3 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|289580588|ref|YP_003479054.1| - 0.00022 21.4 0.5 0.00032 20.9 0.5 1.3 1 1 0 1 1 1 1 Ferritin-like domain Ferritin-like PF12902.7 gi|289580588|ref|YP_003479054.1| - 0.0032 17.4 0.2 0.0038 17.1 0.2 1.1 1 0 0 1 1 1 1 Ferritin-like DUF4439 PF14530.6 gi|289580588|ref|YP_003479054.1| - 0.016 15.9 0.2 0.021 15.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) DUF892 PF05974.12 gi|289580588|ref|YP_003479054.1| - 0.029 14.4 3.1 0.071 13.1 3.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF892) DUF2383 PF09537.10 gi|289580588|ref|YP_003479054.1| - 0.27 11.6 5.6 0.8 10.1 2.3 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF2383) Glyoxalase PF00903.25 gi|289580590|ref|YP_003479056.1| - 1.6e-11 44.5 0.0 5.9e-07 29.7 0.0 3.0 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289580590|ref|YP_003479056.1| - 4.6e-09 37.0 4.4 0.0014 19.4 1.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|289580590|ref|YP_003479056.1| - 1.3e-05 25.1 0.0 1.7 8.6 0.0 3.8 3 1 0 3 3 3 3 Glyoxalase-like domain RHH_1 PF01402.21 gi|289580594|ref|YP_003479060.1| - 0.00062 19.6 0.1 0.0011 18.8 0.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|289580594|ref|YP_003479060.1| - 0.093 13.1 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain SHOCT PF09851.9 gi|289580594|ref|YP_003479060.1| - 0.095 12.5 2.2 0.17 11.7 2.2 1.5 1 1 0 1 1 1 0 Short C-terminal domain Glycos_transf_2 PF00535.26 gi|289580596|ref|YP_003479062.1| - 1.1e-16 61.1 0.1 1.6e-16 60.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289580596|ref|YP_003479062.1| - 4.3e-08 33.3 0.0 7.3e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|289580596|ref|YP_003479062.1| - 0.0023 18.4 0.0 0.005 17.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0060 PF02694.15 gi|289580596|ref|YP_003479062.1| - 0.046 14.0 1.6 0.077 13.2 1.6 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family Abhydrolase_3 PF07859.13 gi|289580596|ref|YP_003479062.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold UDPG_MGDP_dh_N PF03721.14 gi|289580597|ref|YP_003479063.1| - 6.3e-47 159.6 0.0 2.9e-29 102.0 0.0 2.3 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|289580597|ref|YP_003479063.1| - 4.7e-34 116.5 0.0 8.9e-34 115.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|289580597|ref|YP_003479063.1| - 4e-26 91.5 0.1 1.2e-25 89.9 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.23 gi|289580597|ref|YP_003479063.1| - 2.8e-05 24.1 0.1 0.0006 19.8 0.0 2.6 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|289580597|ref|YP_003479063.1| - 0.00023 21.1 0.1 0.0006 19.7 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|289580597|ref|YP_003479063.1| - 0.00061 20.3 0.5 0.0062 17.1 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|289580597|ref|YP_003479063.1| - 0.00079 19.1 0.0 0.0044 16.7 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|289580597|ref|YP_003479063.1| - 0.0013 19.3 2.2 1.1 9.9 0.1 4.5 4 1 1 5 5 5 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|289580597|ref|YP_003479063.1| - 0.0019 17.5 0.4 0.0032 16.7 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF3320 PF11784.8 gi|289580597|ref|YP_003479063.1| - 0.0046 16.9 0.8 0.015 15.3 0.8 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) TrkA_N PF02254.18 gi|289580597|ref|YP_003479063.1| - 0.014 15.6 4.4 0.035 14.3 0.2 3.3 4 1 0 4 4 4 0 TrkA-N domain NAD_binding_8 PF13450.6 gi|289580597|ref|YP_003479063.1| - 0.033 14.4 0.1 0.14 12.5 0.1 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|289580597|ref|YP_003479063.1| - 0.089 12.1 0.3 1.2 8.5 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF43 PF01861.16 gi|289580597|ref|YP_003479063.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Rossmann-like PF10727.9 gi|289580597|ref|YP_003479063.1| - 0.16 11.9 0.2 0.16 11.9 0.2 2.3 3 0 0 3 3 3 0 Rossmann-like domain Cdc6_C PF09079.11 gi|289580598|ref|YP_003479064.1| - 7.7e-10 38.6 0.1 1.8e-09 37.4 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|289580598|ref|YP_003479064.1| - 2.7e-09 37.6 0.2 8.2e-09 36.1 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289580598|ref|YP_003479064.1| - 1.5e-07 31.8 0.1 6.4e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|289580598|ref|YP_003479064.1| - 1.7e-06 28.5 0.0 5.4e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|289580598|ref|YP_003479064.1| - 0.00064 19.4 0.0 0.0069 16.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|289580598|ref|YP_003479064.1| - 0.0055 16.7 0.1 1.2 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|289580598|ref|YP_003479064.1| - 0.0059 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|289580598|ref|YP_003479064.1| - 0.0065 16.4 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF2791 PF10923.8 gi|289580598|ref|YP_003479064.1| - 0.0088 14.9 0.1 0.017 14.0 0.1 1.4 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) ABC_tran PF00005.27 gi|289580598|ref|YP_003479064.1| - 0.043 14.3 0.1 0.14 12.7 0.1 1.8 1 1 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.26 gi|289580598|ref|YP_003479064.1| - 0.049 13.3 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|289580598|ref|YP_003479064.1| - 0.052 12.7 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NTP_transferase PF00483.23 gi|289580599|ref|YP_003479065.1| - 5.8e-42 144.0 0.0 6.8e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289580599|ref|YP_003479065.1| - 2.6e-13 50.7 0.0 3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|289580599|ref|YP_003479065.1| - 1.7e-06 28.0 0.0 6.4e-06 26.1 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|289580600|ref|YP_003479066.1| - 9.7e-45 153.1 0.0 1.4e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289580600|ref|YP_003479066.1| - 5.3e-17 62.6 0.4 7.6e-17 62.1 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|289580600|ref|YP_003479066.1| - 5.7e-14 51.2 19.1 2.6e-05 23.7 0.6 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289580600|ref|YP_003479066.1| - 1.6e-11 43.7 16.3 1.4e-05 24.8 2.1 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|289580600|ref|YP_003479066.1| - 0.051 11.7 1.8 0.077 11.1 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|289580600|ref|YP_003479066.1| - 0.25 10.2 0.1 0.48 9.3 0.1 1.4 1 0 0 1 1 1 0 L-fucokinase Bactofilin PF04519.13 gi|289580600|ref|YP_003479066.1| - 0.58 10.5 14.1 1.2 9.5 1.2 3.0 1 1 0 2 2 2 0 Polymer-forming cytoskeletal SIS PF01380.22 gi|289580601|ref|YP_003479067.1| - 1.5e-34 118.7 0.4 1.6e-16 60.4 0.2 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|289580601|ref|YP_003479067.1| - 1.8e-22 80.0 0.2 4.9e-22 78.6 0.2 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|289580601|ref|YP_003479067.1| - 6e-19 68.2 0.0 1.1e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain AsmA_2 PF13502.6 gi|289580601|ref|YP_003479067.1| - 0.024 14.2 0.0 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 AsmA-like C-terminal region GATase_4 PF13230.6 gi|289580601|ref|YP_003479067.1| - 0.027 13.4 0.0 0.16 10.8 0.0 2.0 2 0 0 2 2 2 0 Glutamine amidotransferases class-II UreE_N PF02814.15 gi|289580601|ref|YP_003479067.1| - 0.07 12.7 0.3 0.2 11.3 0.3 1.8 1 0 0 1 1 1 0 UreE urease accessory protein, N-terminal domain Polysacc_synt_C PF14667.6 gi|289580602|ref|YP_003479068.1| - 1.4e-20 73.8 14.4 1.4e-20 73.8 14.4 3.7 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|289580602|ref|YP_003479068.1| - 5.5e-17 61.9 11.1 5.5e-17 61.9 11.1 2.2 2 2 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|289580602|ref|YP_003479068.1| - 8.4e-15 54.9 21.0 8.4e-15 54.9 21.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|289580602|ref|YP_003479068.1| - 2e-08 33.3 24.2 4.3e-08 32.2 24.2 1.5 1 1 0 1 1 1 1 Lipid II flippase MurJ Methyltransf_11 PF08241.12 gi|289580604|ref|YP_003479070.1| - 7.3e-15 55.4 0.0 1.2e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289580604|ref|YP_003479070.1| - 2.1e-13 50.8 0.0 3.6e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580604|ref|YP_003479070.1| - 1.5e-11 44.4 0.0 2.1e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|289580604|ref|YP_003479070.1| - 1.1e-10 41.5 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|289580604|ref|YP_003479070.1| - 4.7e-10 39.5 0.0 6.6e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580604|ref|YP_003479070.1| - 1.8e-09 38.2 0.0 3.8e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|289580604|ref|YP_003479070.1| - 7.9e-06 24.7 0.0 9.9e-06 24.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase FtsJ PF01728.19 gi|289580604|ref|YP_003479070.1| - 2.3e-05 24.6 0.0 3.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|289580604|ref|YP_003479070.1| - 0.0075 16.1 0.0 0.015 15.1 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|289580604|ref|YP_003479070.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|289580604|ref|YP_003479070.1| - 0.052 12.9 0.1 0.08 12.3 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.20 gi|289580605|ref|YP_003479071.1| - 4.3e-27 94.7 0.0 7.8e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289580605|ref|YP_003479071.1| - 3.7e-25 88.9 0.0 8e-25 87.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|289580605|ref|YP_003479071.1| - 1.2e-07 32.0 0.0 2.7e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 AOC_like PF18678.1 gi|289580605|ref|YP_003479071.1| - 0.085 12.5 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Allene oxide cyclase barrel like domain Glycos_transf_2 PF00535.26 gi|289580606|ref|YP_003479072.1| - 5.4e-21 75.1 0.5 7.9e-21 74.6 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289580606|ref|YP_003479072.1| - 1.1e-15 58.1 1.2 2.1e-15 57.2 1.2 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|289580606|ref|YP_003479072.1| - 2.1e-07 30.7 1.5 3.9e-05 23.3 0.6 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|289580606|ref|YP_003479072.1| - 0.00015 21.7 0.2 0.00037 20.5 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|289580606|ref|YP_003479072.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 STT3 PF02516.14 gi|289580607|ref|YP_003479073.1| - 5.1e-20 71.9 17.6 4.4e-19 68.8 16.9 2.3 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|289580607|ref|YP_003479073.1| - 5.9e-20 71.4 3.7 5.9e-20 71.4 3.7 2.1 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain MHB PF16525.5 gi|289580608|ref|YP_003479074.1| - 0.2 11.9 0.0 0.26 11.6 0.0 1.4 1 1 0 1 1 1 0 Haemophore, haem-binding Serglycin PF04360.12 gi|289580609|ref|YP_003479075.1| - 0.056 13.4 0.2 0.13 12.2 0.2 1.5 1 0 0 1 1 1 0 Serglycin AAA_16 PF13191.6 gi|289580610|ref|YP_003479076.1| - 2.2e-08 34.7 3.1 1.4e-07 32.0 3.1 2.6 1 1 0 1 1 1 1 AAA ATPase domain Guanylate_kin PF00625.21 gi|289580610|ref|YP_003479076.1| - 0.0054 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Guanylate kinase PTPRCAP PF15713.5 gi|289580610|ref|YP_003479076.1| - 0.0075 16.6 2.0 0.013 15.8 2.0 1.3 1 0 0 1 1 1 1 Protein tyrosine phosphatase receptor type C-associated AAA_22 PF13401.6 gi|289580610|ref|YP_003479076.1| - 0.013 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MarR PF01047.22 gi|289580610|ref|YP_003479076.1| - 0.039 13.9 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 MarR family Pex14_N PF04695.13 gi|289580610|ref|YP_003479076.1| - 0.098 13.3 8.2 0.17 12.5 8.2 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region ATP11 PF06644.11 gi|289580610|ref|YP_003479076.1| - 0.1 12.4 0.6 0.15 11.8 0.6 1.3 1 0 0 1 1 1 0 ATP11 protein Suf PF05843.14 gi|289580610|ref|YP_003479076.1| - 2.2 8.2 4.6 3.4 7.6 4.6 1.2 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) CCDC53 PF10152.9 gi|289580610|ref|YP_003479076.1| - 2.2 8.7 5.7 3.9 7.9 5.7 1.4 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex CCG PF02754.16 gi|289580611|ref|YP_003479077.1| - 5.6e-22 77.7 1.7 1.4e-11 44.4 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|289580611|ref|YP_003479077.1| - 5e-09 36.5 7.9 5e-09 36.5 7.9 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289580611|ref|YP_003479077.1| - 4.3e-06 27.2 8.2 4.3e-06 27.2 8.2 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289580611|ref|YP_003479077.1| - 0.0038 17.8 13.6 0.0038 17.8 13.6 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289580611|ref|YP_003479077.1| - 0.0071 16.5 16.3 0.0088 16.2 12.4 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289580611|ref|YP_003479077.1| - 0.0082 16.2 18.1 0.016 15.3 13.0 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain DDE_Tnp_ISAZ013 PF07592.11 gi|289580611|ref|YP_003479077.1| - 0.052 12.5 0.0 0.09 11.7 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Fer4_21 PF14697.6 gi|289580611|ref|YP_003479077.1| - 0.071 13.2 10.6 1 9.5 1.4 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|289580611|ref|YP_003479077.1| - 0.11 12.8 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) zf-CSL PF05207.13 gi|289580611|ref|YP_003479077.1| - 0.11 12.2 0.0 0.11 12.2 0.0 4.4 6 0 0 6 6 6 0 CSL zinc finger Fer4_16 PF13484.6 gi|289580611|ref|YP_003479077.1| - 1.1 10.2 17.5 1.6 9.7 2.7 3.4 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|289580611|ref|YP_003479077.1| - 1.3 9.0 13.5 0.43 10.5 2.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|289580611|ref|YP_003479077.1| - 2.6 8.2 5.5 0.47 10.6 0.4 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S FAD_binding_2 PF00890.24 gi|289580612|ref|YP_003479078.1| - 4.5e-40 138.0 3.5 5.4e-40 137.8 3.5 1.0 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289580612|ref|YP_003479078.1| - 0.00026 20.3 0.3 0.0038 16.5 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289580612|ref|YP_003479078.1| - 0.001 18.2 0.5 0.001 18.2 0.5 1.7 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|289580612|ref|YP_003479078.1| - 0.0016 17.8 1.0 0.0028 17.1 1.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|289580612|ref|YP_003479078.1| - 0.0079 15.8 8.8 0.082 12.5 8.8 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|289580612|ref|YP_003479078.1| - 0.12 11.2 0.1 0.17 10.7 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.14 gi|289580612|ref|YP_003479078.1| - 0.15 10.8 0.1 0.44 9.2 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein DAO PF01266.24 gi|289580613|ref|YP_003479079.1| - 9.2e-51 173.5 1.7 1.3e-50 172.9 1.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|289580613|ref|YP_003479079.1| - 8e-11 42.1 3.4 3.1e-10 40.2 3.4 2.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|289580613|ref|YP_003479079.1| - 5e-07 29.2 0.2 2.2e-06 27.1 0.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|289580613|ref|YP_003479079.1| - 6.1e-07 29.0 5.6 1.2e-05 24.8 5.6 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|289580613|ref|YP_003479079.1| - 1.3e-05 24.5 2.7 3.8e-05 22.9 2.7 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|289580613|ref|YP_003479079.1| - 0.00083 19.5 0.6 0.019 15.2 0.4 2.8 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|289580613|ref|YP_003479079.1| - 0.0028 18.2 2.1 0.0051 17.3 0.4 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|289580613|ref|YP_003479079.1| - 0.022 14.4 0.2 0.048 13.3 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|289580613|ref|YP_003479079.1| - 0.045 13.0 0.6 0.16 11.2 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|289580613|ref|YP_003479079.1| - 0.054 13.4 0.2 0.097 12.5 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Antifungal_pept PF11410.8 gi|289580613|ref|YP_003479079.1| - 0.082 12.8 1.9 0.18 11.7 1.9 1.5 1 0 0 1 1 1 0 Antifungal peptide DUF3606 PF12244.8 gi|289580613|ref|YP_003479079.1| - 0.15 12.0 0.0 0.57 10.2 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) FAD_oxidored PF12831.7 gi|289580613|ref|YP_003479079.1| - 0.16 11.3 5.8 1.1 8.5 5.9 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|289580613|ref|YP_003479079.1| - 0.8 8.7 2.3 0.6 9.1 0.8 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A FGGY_N PF00370.21 gi|289580614|ref|YP_003479080.1| - 3.3e-77 259.4 0.0 4.5e-77 258.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|289580614|ref|YP_003479080.1| - 2.4e-59 200.4 0.7 4e-59 199.7 0.7 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|289580614|ref|YP_003479080.1| - 0.002 17.7 0.1 0.0057 16.2 0.0 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family adh_short_C2 PF13561.6 gi|289580616|ref|YP_003479082.1| - 6e-49 166.7 0.0 7.8e-49 166.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580616|ref|YP_003479082.1| - 3.6e-36 124.5 0.0 4.5e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580616|ref|YP_003479082.1| - 0.00035 20.5 0.0 0.0011 19.0 0.0 1.7 1 1 0 1 1 1 1 KR domain MCPsignal PF00015.21 gi|289580617|ref|YP_003479083.1| - 3.2e-36 124.7 27.0 3.2e-36 124.7 27.0 5.2 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289580617|ref|YP_003479083.1| - 2.3e-11 43.9 5.7 4.5e-06 26.9 0.1 4.3 4 1 0 4 4 3 2 HAMP domain Laminin_II PF06009.12 gi|289580617|ref|YP_003479083.1| - 0.00015 21.8 40.8 0.0015 18.6 0.5 5.6 3 2 1 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|289580617|ref|YP_003479083.1| - 0.00052 20.2 46.0 0.27 11.5 2.6 6.5 2 2 4 6 6 6 5 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|289580617|ref|YP_003479083.1| - 0.0022 17.0 38.7 0.01 14.7 5.6 3.3 3 0 0 3 3 3 3 Spc7 kinetochore protein Alanine_zipper PF11839.8 gi|289580617|ref|YP_003479083.1| - 0.0027 18.0 22.8 0.0027 18.0 22.8 6.8 5 3 1 6 6 3 2 Alanine-zipper, major outer membrane lipoprotein ATG16 PF08614.11 gi|289580617|ref|YP_003479083.1| - 0.0034 17.6 3.6 0.0034 17.6 3.6 4.5 1 1 1 3 3 2 1 Autophagy protein 16 (ATG16) Vip3A_N PF12495.8 gi|289580617|ref|YP_003479083.1| - 0.0038 17.1 1.4 2.2 8.1 0.1 3.3 2 2 1 3 3 3 1 Vegetative insecticide protein 3A N terminal Rootletin PF15035.6 gi|289580617|ref|YP_003479083.1| - 0.0052 16.8 22.0 0.014 15.4 0.1 3.8 2 1 2 4 4 4 2 Ciliary rootlet component, centrosome cohesion DUF3450 PF11932.8 gi|289580617|ref|YP_003479083.1| - 0.0085 15.4 2.2 0.0085 15.4 2.2 5.2 3 2 2 5 5 5 2 Protein of unknown function (DUF3450) GldM_N PF12081.8 gi|289580617|ref|YP_003479083.1| - 0.11 12.5 37.0 0.032 14.3 3.7 4.8 3 2 2 5 5 4 0 GldM N-terminal domain ERM PF00769.19 gi|289580617|ref|YP_003479083.1| - 0.14 12.0 50.8 0.3 10.9 4.9 3.6 2 1 0 3 3 3 0 Ezrin/radixin/moesin family DUF1664 PF07889.12 gi|289580617|ref|YP_003479083.1| - 0.31 11.1 39.4 0.096 12.7 1.6 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Mce4_CUP1 PF11887.8 gi|289580617|ref|YP_003479083.1| - 0.7 9.3 22.4 0.55 9.6 5.3 3.7 1 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Serine_rich PF08824.10 gi|289580617|ref|YP_003479083.1| - 0.93 9.5 16.1 0.055 13.5 0.6 3.9 2 2 1 3 3 3 0 Serine rich protein interaction domain RPW8 PF05659.11 gi|289580617|ref|YP_003479083.1| - 1.7 8.3 7.9 9.6 5.9 0.0 4.3 2 2 0 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 YscO PF07321.12 gi|289580617|ref|YP_003479083.1| - 1.8 8.5 39.0 2 8.4 14.2 4.2 3 2 1 4 4 4 0 Type III secretion protein YscO DUF812 PF05667.11 gi|289580617|ref|YP_003479083.1| - 2.5 6.9 44.1 2.6 6.8 14.4 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF812) MAJIN PF15077.6 gi|289580617|ref|YP_003479083.1| - 4.8 6.9 6.5 22 4.7 0.2 2.6 2 0 0 2 2 2 0 Membrane-anchored junction protein BLOC1_2 PF10046.9 gi|289580617|ref|YP_003479083.1| - 5.2 7.4 33.1 0.35 11.2 1.7 6.2 3 3 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SHE3 PF17078.5 gi|289580617|ref|YP_003479083.1| - 5.4 6.7 20.8 5.7 6.6 0.8 3.4 3 0 0 3 3 3 0 SWI5-dependent HO expression protein 3 Fez1 PF06818.15 gi|289580617|ref|YP_003479083.1| - 5.4 7.4 37.3 3.5 8.0 10.8 3.3 2 1 1 3 3 3 0 Fez1 YkyA PF10368.9 gi|289580617|ref|YP_003479083.1| - 5.6 6.6 43.4 3.3 7.3 6.8 4.8 3 2 1 4 4 4 0 Putative cell-wall binding lipoprotein CENP-F_leu_zip PF10473.9 gi|289580617|ref|YP_003479083.1| - 6.5 6.8 39.0 0.6 10.1 6.7 4.9 3 2 2 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|289580617|ref|YP_003479083.1| - 7.9 5.8 29.4 1.5 8.1 9.2 3.7 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|289580617|ref|YP_003479083.1| - 8.3 6.7 35.3 2.8 8.2 0.7 5.5 2 1 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.11 gi|289580617|ref|YP_003479083.1| - 9.4 6.3 30.7 5.4 7.1 0.4 5.5 3 2 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Hydrolase_3 PF08282.12 gi|289580618|ref|YP_003479084.1| - 1.5e-23 83.9 0.0 5.2e-16 59.2 0.1 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580618|ref|YP_003479084.1| - 5.5e-06 26.8 1.2 0.00028 21.2 1.2 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|289580618|ref|YP_003479084.1| - 0.0001 21.9 0.0 0.0029 17.2 0.1 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|289580618|ref|YP_003479084.1| - 0.015 15.7 8.1 0.058 13.8 0.1 3.3 3 1 1 4 4 4 0 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|289580618|ref|YP_003479084.1| - 0.062 12.4 0.3 0.2 10.7 0.1 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase Ad_Cy_reg PF16701.5 gi|289580618|ref|YP_003479084.1| - 3 7.5 6.2 1.4 8.6 1.2 2.2 1 1 1 2 2 2 0 Adenylate cyclase regulatory domain DUF1772 PF08592.11 gi|289580619|ref|YP_003479085.1| - 0.033 14.5 0.1 0.038 14.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) 7TM-7TMR_HD PF07698.11 gi|289580619|ref|YP_003479085.1| - 0.052 13.3 1.0 0.059 13.1 1.0 1.1 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF3681 PF12442.8 gi|289580619|ref|YP_003479085.1| - 0.081 13.4 1.4 0.11 13.0 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3681) Radical_SAM PF04055.21 gi|289580620|ref|YP_003479086.1| - 1.3e-20 74.4 0.7 5.4e-20 72.4 0.7 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|289580620|ref|YP_003479086.1| - 3e-19 69.1 0.2 8.8e-19 67.6 0.1 1.9 2 0 0 2 2 2 1 Wyosine base formation CTP-dep_RFKase PF01982.16 gi|289580621|ref|YP_003479087.1| - 2.8e-47 159.8 0.0 4.1e-47 159.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|289580621|ref|YP_003479087.1| - 4e-07 30.0 1.1 8e-07 29.0 1.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289580621|ref|YP_003479087.1| - 3.6e-05 23.6 0.4 7.3e-05 22.6 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289580621|ref|YP_003479087.1| - 0.00062 19.3 0.1 0.0012 18.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|289580621|ref|YP_003479087.1| - 0.00073 19.5 0.4 0.0016 18.4 0.1 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289580621|ref|YP_003479087.1| - 0.00073 19.3 0.2 0.00073 19.3 0.2 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|289580621|ref|YP_003479087.1| - 0.0085 16.0 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|289580621|ref|YP_003479087.1| - 0.015 15.2 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.27 gi|289580621|ref|YP_003479087.1| - 0.061 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|289580621|ref|YP_003479087.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Dimerisation PF08100.11 gi|289580621|ref|YP_003479087.1| - 0.089 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain Fe_dep_repress PF01325.19 gi|289580621|ref|YP_003479087.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|289580621|ref|YP_003479087.1| - 0.12 12.0 0.2 0.24 11.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DHBP_synthase PF00926.19 gi|289580622|ref|YP_003479088.1| - 7.8e-55 185.4 0.2 9e-55 185.2 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase TctB PF07331.11 gi|289580623|ref|YP_003479089.1| - 0.031 14.5 4.8 0.041 14.2 4.8 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3995 PF13160.6 gi|289580623|ref|YP_003479089.1| - 0.27 11.6 8.7 0.53 10.6 8.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) DUF2530 PF10745.9 gi|289580623|ref|YP_003479089.1| - 0.32 11.3 7.0 0.18 12.1 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) Gram_pos_anchor PF00746.21 gi|289580623|ref|YP_003479089.1| - 0.46 10.5 0.2 0.46 10.5 0.2 2.4 2 1 0 2 2 2 0 LPXTG cell wall anchor motif Chordopox_A13L PF05961.11 gi|289580623|ref|YP_003479089.1| - 0.9 9.8 4.7 11 6.4 0.7 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein HTH_24 PF13412.6 gi|289580624|ref|YP_003479090.1| - 4.4e-13 48.6 0.0 5.4e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|289580624|ref|YP_003479090.1| - 1.7e-11 44.0 1.2 1.7e-08 34.4 0.3 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|289580624|ref|YP_003479090.1| - 1.7e-10 40.6 0.5 1.2e-06 28.3 0.1 2.4 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|289580624|ref|YP_003479090.1| - 3.2e-08 33.3 0.0 4.8e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|289580624|ref|YP_003479090.1| - 6.3e-06 26.6 0.2 6.1e-05 23.4 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|289580624|ref|YP_003479090.1| - 4e-05 23.4 0.0 0.00011 22.1 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|289580624|ref|YP_003479090.1| - 7.5e-05 22.6 0.0 0.0006 19.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.12 gi|289580624|ref|YP_003479090.1| - 0.002 17.9 0.0 0.0092 15.8 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|289580624|ref|YP_003479090.1| - 0.0031 17.3 0.1 0.0031 17.3 0.1 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|289580624|ref|YP_003479090.1| - 0.0031 17.2 0.8 0.33 10.6 0.0 2.5 3 0 0 3 3 3 1 Replication protein C N-terminal domain Penicillinase_R PF03965.16 gi|289580624|ref|YP_003479090.1| - 0.0088 16.4 0.0 1.2 9.5 0.0 2.4 1 1 1 2 2 2 1 Penicillinase repressor AbiEi_4 PF13338.6 gi|289580624|ref|YP_003479090.1| - 0.012 15.8 0.0 0.18 12.0 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin RPA_C PF08784.11 gi|289580624|ref|YP_003479090.1| - 0.013 16.2 0.0 1.6 9.5 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_Crp_2 PF13545.6 gi|289580624|ref|YP_003479090.1| - 0.013 15.4 2.3 0.014 15.3 0.1 2.2 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|289580624|ref|YP_003479090.1| - 0.014 15.2 0.2 0.04 13.7 0.2 2.0 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FaeA PF04703.12 gi|289580624|ref|YP_003479090.1| - 0.017 15.5 0.1 0.052 13.9 0.0 1.7 2 0 0 2 2 2 0 FaeA-like protein HTH_28 PF13518.6 gi|289580624|ref|YP_003479090.1| - 0.054 13.6 0.5 0.67 10.1 0.0 2.7 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|289580624|ref|YP_003479090.1| - 0.13 12.1 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_40 PF14493.6 gi|289580624|ref|YP_003479090.1| - 0.15 12.6 0.0 0.82 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|289580624|ref|YP_003479090.1| - 0.17 12.0 0.0 0.66 10.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3015 PF11220.8 gi|289580624|ref|YP_003479090.1| - 0.18 11.7 0.0 10 6.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3015) ANAPC4_WD40 PF12894.7 gi|289580625|ref|YP_003479091.1| - 0.037 14.3 0.0 5.2 7.4 0.0 3.7 4 1 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain DUF1236 PF06823.12 gi|289580625|ref|YP_003479091.1| - 0.31 11.0 19.4 1.9 8.4 0.0 5.7 5 1 1 6 6 6 0 Protein of unknown function (DUF1236) CopC PF04234.12 gi|289580626|ref|YP_003479092.1| - 2.3e-20 73.4 1.9 4.6e-19 69.2 0.3 2.7 2 0 0 2 2 2 1 CopC domain CopD PF05425.13 gi|289580626|ref|YP_003479092.1| - 2.6e-18 66.3 7.1 2.6e-18 66.3 7.1 5.6 4 1 1 5 5 5 1 Copper resistance protein D DUF4131 PF13567.6 gi|289580626|ref|YP_003479092.1| - 0.0029 17.3 16.4 0.72 9.5 0.9 5.1 5 0 0 5 5 5 2 Domain of unknown function (DUF4131) YtkA PF13115.6 gi|289580626|ref|YP_003479092.1| - 0.0049 17.5 1.3 0.0096 16.5 0.0 2.2 2 1 1 3 3 3 1 YtkA-like DUF4149 PF13664.6 gi|289580626|ref|YP_003479092.1| - 0.0064 16.8 1.7 0.0064 16.8 1.7 4.2 4 1 0 4 4 4 1 Domain of unknown function (DUF4149) FixH PF05751.11 gi|289580626|ref|YP_003479092.1| - 0.011 15.8 0.1 0.043 13.8 0.1 2.1 1 1 0 1 1 1 0 FixH UPF0093 PF03653.13 gi|289580626|ref|YP_003479092.1| - 0.15 12.3 0.2 0.48 10.7 0.2 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0093) DUF2269 PF10027.9 gi|289580626|ref|YP_003479092.1| - 0.51 10.4 16.3 0.047 13.8 7.3 2.8 3 0 0 3 3 3 0 Predicted integral membrane protein (DUF2269) MARVEL PF01284.23 gi|289580626|ref|YP_003479092.1| - 6.3 6.8 10.1 56 3.7 7.5 3.6 4 1 1 5 5 5 0 Membrane-associating domain Aminotran_4 PF01063.19 gi|289580627|ref|YP_003479093.1| - 2.4e-48 164.9 0.0 2.9e-48 164.7 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Coiled-coil_56 PF09813.9 gi|289580627|ref|YP_003479093.1| - 0.12 12.4 0.0 0.82 9.8 0.0 2.1 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 56 DUF502 PF04367.13 gi|289580628|ref|YP_003479094.1| - 7.3e-19 67.6 0.2 1.6e-18 66.5 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Pro_dh PF01619.18 gi|289580629|ref|YP_003479095.1| - 2e-22 80.1 0.0 3.2e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 Proline dehydrogenase CarS-like PF01864.17 gi|289580630|ref|YP_003479096.1| - 9e-47 159.3 1.6 1e-46 159.1 1.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|289580630|ref|YP_003479096.1| - 5.7e-06 26.3 1.6 5.7e-06 26.3 1.6 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|289580630|ref|YP_003479096.1| - 0.64 9.8 7.6 1.4 8.7 0.3 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper Response_reg PF00072.24 gi|289580631|ref|YP_003479097.1| - 4.7e-17 62.2 0.0 2.3e-12 47.1 0.0 2.1 2 0 0 2 2 2 2 Response regulator receiver domain IMUP PF15761.5 gi|289580631|ref|YP_003479097.1| - 0.065 13.9 1.2 0.13 12.9 1.2 1.5 1 0 0 1 1 1 0 Immortalisation up-regulated protein AF-4 PF05110.13 gi|289580631|ref|YP_003479097.1| - 0.095 10.8 3.1 0.099 10.7 3.1 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Abhydrolase_3 PF07859.13 gi|289580632|ref|YP_003479098.1| - 1.4e-76 257.1 0.1 1.8e-76 256.7 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|289580632|ref|YP_003479098.1| - 1.5e-09 37.3 0.0 3.6e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|289580632|ref|YP_003479098.1| - 0.00092 18.7 0.1 0.0041 16.6 0.1 2.0 1 1 0 1 1 1 1 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 gi|289580632|ref|YP_003479098.1| - 0.0023 16.9 0.0 0.0033 16.4 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_6 PF12697.7 gi|289580632|ref|YP_003479098.1| - 0.011 16.3 5.3 0.02 15.5 5.3 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family Say1_Mug180 PF10340.9 gi|289580632|ref|YP_003479098.1| - 0.013 14.4 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 Steryl acetyl hydrolase AXE1 PF05448.12 gi|289580632|ref|YP_003479098.1| - 0.038 12.7 0.0 0.56 8.8 0.0 2.0 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Pribosyltran PF00156.27 gi|289580633|ref|YP_003479099.1| - 5.7e-15 55.2 1.9 8.1e-15 54.7 1.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|289580633|ref|YP_003479099.1| - 0.00091 18.7 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|289580633|ref|YP_003479099.1| - 0.038 13.5 0.4 0.061 12.8 0.4 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase CBS PF00571.28 gi|289580633|ref|YP_003479099.1| - 0.14 12.6 1.1 0.23 11.9 0.2 1.8 2 0 0 2 2 2 0 CBS domain Trp_oprn_chp PF09534.10 gi|289580634|ref|YP_003479100.1| - 0.035 13.9 1.7 0.039 13.7 1.7 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) tRNA-synt_2b PF00587.25 gi|289580635|ref|YP_003479101.1| - 1e-31 110.3 0.0 1.9e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|289580635|ref|YP_003479101.1| - 4.3e-16 58.8 0.4 4.3e-16 58.8 0.4 2.4 2 0 0 2 2 2 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|289580635|ref|YP_003479101.1| - 4.8e-14 52.2 0.0 8.8e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|289580635|ref|YP_003479101.1| - 1.3e-11 44.4 0.1 3.2e-11 43.1 0.1 1.7 1 0 0 1 1 1 1 TGS domain PEMT PF04191.13 gi|289580636|ref|YP_003479102.1| - 1.5e-18 67.1 0.4 1.5e-18 67.1 0.4 1.8 2 0 0 2 2 2 1 Phospholipid methyltransferase ERG4_ERG24 PF01222.17 gi|289580636|ref|YP_003479102.1| - 2.5e-05 23.3 0.1 4.3e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.16 gi|289580636|ref|YP_003479102.1| - 5.2e-05 23.3 0.1 7.8e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase ICMT PF04140.14 gi|289580636|ref|YP_003479102.1| - 5.6e-05 23.5 0.1 5.6e-05 23.5 0.1 2.3 3 0 0 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.12 gi|289580636|ref|YP_003479102.1| - 0.0019 17.7 2.4 0.0023 17.5 1.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) PRA1 PF03208.19 gi|289580636|ref|YP_003479102.1| - 0.39 10.3 0.0 0.39 10.3 0.0 2.3 2 1 0 2 2 2 0 PRA1 family protein HTH_10 PF04967.12 gi|289580637|ref|YP_003479103.1| - 3.9e-17 61.8 0.0 6.3e-17 61.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|289580637|ref|YP_003479103.1| - 0.0019 17.9 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|289580637|ref|YP_003479103.1| - 0.0022 17.9 0.1 0.0041 17.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 gi|289580637|ref|YP_003479103.1| - 0.013 15.7 0.1 0.025 14.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain VWA_3 PF13768.6 gi|289580637|ref|YP_003479103.1| - 0.025 14.5 0.0 0.043 13.8 0.0 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain HTH_23 PF13384.6 gi|289580637|ref|YP_003479103.1| - 0.044 13.6 0.0 0.13 12.1 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|289580637|ref|YP_003479103.1| - 0.091 12.7 0.5 0.19 11.6 0.5 1.7 1 1 0 1 1 1 0 MarR family Pribosyltran PF00156.27 gi|289580638|ref|YP_003479104.1| - 1.3e-10 41.1 0.1 2e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|289580638|ref|YP_003479104.1| - 0.028 14.5 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Trp_repressor PF01371.19 gi|289580638|ref|YP_003479104.1| - 0.041 14.0 0.0 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein HTH_IclR PF09339.10 gi|289580638|ref|YP_003479104.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Usp PF00582.26 gi|289580639|ref|YP_003479105.1| - 8.9e-33 113.8 0.4 1e-32 113.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF711 PF05167.12 gi|289580639|ref|YP_003479105.1| - 0.014 14.4 0.1 0.022 13.7 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised ACR (DUF711) Ribosomal_L15e PF00827.17 gi|289580640|ref|YP_003479106.1| - 7.7e-83 276.9 5.7 9.4e-83 276.6 5.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 Unstab_antitox PF09720.10 gi|289580641|ref|YP_003479107.1| - 0.23 11.5 3.7 4.3 7.5 0.3 2.2 1 1 1 2 2 2 0 Putative addiction module component Fe_dep_repr_C PF02742.15 gi|289580642|ref|YP_003479108.1| - 5.7e-17 61.6 0.1 1.4e-16 60.3 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|289580642|ref|YP_003479108.1| - 5.1e-15 55.4 1.2 7.5e-15 54.9 0.4 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|289580642|ref|YP_003479108.1| - 1.5e-05 24.8 0.0 3.7e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|289580642|ref|YP_003479108.1| - 1.9e-05 24.9 0.1 3.3e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|289580642|ref|YP_003479108.1| - 2.1e-05 24.4 0.0 4.7e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|289580642|ref|YP_003479108.1| - 7.5e-05 22.6 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289580642|ref|YP_003479108.1| - 0.0022 17.5 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|289580642|ref|YP_003479108.1| - 0.0039 16.9 0.1 0.0092 15.8 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|289580642|ref|YP_003479108.1| - 0.013 15.3 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|289580642|ref|YP_003479108.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Topoisom_bac PF01131.20 gi|289580642|ref|YP_003479108.1| - 0.031 13.3 0.0 0.043 12.8 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_27 PF13463.6 gi|289580642|ref|YP_003479108.1| - 0.039 14.4 0.0 0.1 13.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|289580642|ref|YP_003479108.1| - 0.056 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_37 PF13744.6 gi|289580642|ref|YP_003479108.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_micro PF17007.5 gi|289580642|ref|YP_003479108.1| - 0.14 10.9 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 HTH-like ZnuA PF01297.17 gi|289580643|ref|YP_003479109.1| - 9.9e-51 172.6 0.6 1.1e-50 172.4 0.6 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic DUF3416 PF11896.8 gi|289580643|ref|YP_003479109.1| - 0.016 15.5 0.2 0.029 14.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) Pox_Ag35 PF03286.14 gi|289580643|ref|YP_003479109.1| - 0.42 10.4 3.5 0.68 9.7 3.5 1.4 1 0 0 1 1 1 0 Pox virus Ag35 surface protein ABC_tran PF00005.27 gi|289580644|ref|YP_003479110.1| - 2.3e-30 105.9 0.0 3.1e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289580644|ref|YP_003479110.1| - 4.7e-13 49.6 0.7 1.2e-06 28.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289580644|ref|YP_003479110.1| - 0.00037 20.0 0.7 0.003 17.1 0.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289580644|ref|YP_003479110.1| - 0.0053 16.5 0.1 0.0097 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|289580644|ref|YP_003479110.1| - 0.0063 16.8 0.9 0.097 13.0 0.9 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|289580644|ref|YP_003479110.1| - 0.0073 16.5 0.5 0.15 12.3 0.4 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|289580644|ref|YP_003479110.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|289580644|ref|YP_003479110.1| - 0.015 15.2 0.0 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.6 gi|289580644|ref|YP_003479110.1| - 0.023 15.2 0.9 0.027 15.0 0.9 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|289580644|ref|YP_003479110.1| - 0.025 15.0 0.1 0.34 11.3 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289580644|ref|YP_003479110.1| - 0.031 14.7 0.3 0.067 13.6 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|289580644|ref|YP_003479110.1| - 0.057 13.3 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|289580644|ref|YP_003479110.1| - 0.059 12.9 0.5 0.14 11.7 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|289580644|ref|YP_003479110.1| - 0.08 12.6 0.3 0.28 10.9 0.3 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|289580644|ref|YP_003479110.1| - 0.12 11.5 0.2 0.76 8.8 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|289580644|ref|YP_003479110.1| - 0.18 12.0 0.2 0.3 11.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|289580644|ref|YP_003479110.1| - 0.18 11.5 0.3 0.62 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|289580645|ref|YP_003479111.1| - 2.1e-59 201.1 36.1 4e-59 200.2 36.1 1.4 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|289580645|ref|YP_003479111.1| - 3.9e-05 22.8 35.3 3.9e-05 22.8 35.3 2.9 1 1 1 3 3 3 1 FecCD transport family DUF677 PF05055.12 gi|289580645|ref|YP_003479111.1| - 0.81 8.5 2.4 1.9 7.3 2.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF677) RIO1 PF01163.22 gi|289580646|ref|YP_003479112.1| - 1.4e-47 161.8 0.3 1.9e-47 161.3 0.3 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|289580646|ref|YP_003479112.1| - 2.9e-27 94.7 0.1 5.4e-27 93.8 0.1 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|289580646|ref|YP_003479112.1| - 0.00011 22.3 1.4 0.06 13.3 0.0 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|289580646|ref|YP_003479112.1| - 0.0047 16.3 0.0 0.0082 15.5 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain BPL_LplA_LipB PF03099.19 gi|289580647|ref|YP_003479113.1| - 2.2e-07 30.8 0.0 3.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M48 PF01435.18 gi|289580648|ref|YP_003479114.1| - 8e-22 78.0 0.0 1.4e-21 77.2 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289580648|ref|YP_003479114.1| - 1.1e-05 24.8 0.0 2.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289580648|ref|YP_003479114.1| - 0.0014 18.5 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family AP_endonuc_2 PF01261.24 gi|289580649|ref|YP_003479115.1| - 5.5e-27 94.6 0.9 1.1e-26 93.6 0.3 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel MarB PF13999.6 gi|289580649|ref|YP_003479115.1| - 0.16 11.8 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 MarB protein BioY PF02632.14 gi|289580651|ref|YP_003479117.1| - 0.021 14.9 2.4 0.026 14.6 2.4 1.3 1 0 0 1 1 1 0 BioY family DUF202 PF02656.15 gi|289580651|ref|YP_003479117.1| - 0.11 13.0 2.5 0.12 12.8 2.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Methyltransf_25 PF13649.6 gi|289580652|ref|YP_003479118.1| - 2.1e-20 73.2 0.5 3e-19 69.5 0.0 2.7 1 1 2 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289580652|ref|YP_003479118.1| - 4.7e-19 68.8 0.1 2.3e-18 66.6 0.0 2.1 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289580652|ref|YP_003479118.1| - 3.5e-16 59.4 0.0 5.6e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580652|ref|YP_003479118.1| - 2.7e-13 50.1 0.0 3.6e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580652|ref|YP_003479118.1| - 4e-12 46.7 0.0 1.5e-11 44.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|289580652|ref|YP_003479118.1| - 9e-10 38.5 0.0 1.4e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|289580652|ref|YP_003479118.1| - 4.7e-09 35.9 0.0 7.2e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|289580652|ref|YP_003479118.1| - 6.5e-06 25.8 0.0 1.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|289580652|ref|YP_003479118.1| - 3.2e-05 23.9 0.0 6.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|289580652|ref|YP_003479118.1| - 0.0006 19.3 0.0 0.00089 18.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|289580652|ref|YP_003479118.1| - 0.0011 18.7 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|289580652|ref|YP_003479118.1| - 0.0017 17.0 0.0 0.0025 16.4 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|289580652|ref|YP_003479118.1| - 0.0042 16.4 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|289580652|ref|YP_003479118.1| - 0.0066 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|289580652|ref|YP_003479118.1| - 0.0076 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|289580652|ref|YP_003479118.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF4442 PF14539.6 gi|289580655|ref|YP_003479121.1| - 2.7e-17 63.1 0.0 3e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 gi|289580655|ref|YP_003479121.1| - 0.0013 18.6 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative thioesterase (yiiD_Cterm) Abhydrolase_6 PF12697.7 gi|289580656|ref|YP_003479122.1| - 0.00039 21.1 3.3 0.0012 19.5 3.3 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|289580656|ref|YP_003479122.1| - 0.0055 16.5 0.0 0.0082 15.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family ATP_bind_3 PF01171.20 gi|289580657|ref|YP_003479123.1| - 2.2e-12 47.1 0.0 3.4e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|289580657|ref|YP_003479123.1| - 4.6e-05 23.5 0.0 7.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|289580657|ref|YP_003479123.1| - 0.00053 19.2 0.0 0.0009 18.4 0.0 1.4 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|289580657|ref|YP_003479123.1| - 0.0011 18.5 1.8 0.0011 18.5 1.8 3.0 4 0 0 4 4 4 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|289580657|ref|YP_003479123.1| - 0.0021 16.9 0.0 0.0032 16.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|289580657|ref|YP_003479123.1| - 0.89 9.2 7.9 0.61 9.7 2.8 3.1 3 0 0 3 3 3 0 RecR protein zf-ribbon_3 PF13248.6 gi|289580658|ref|YP_003479124.1| - 1.8e-10 39.8 11.8 3.3e-07 29.5 3.5 3.4 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|289580658|ref|YP_003479124.1| - 1e-09 38.3 5.3 4e-07 29.9 2.1 2.4 2 0 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289580658|ref|YP_003479124.1| - 1.9e-06 27.4 20.6 0.0045 16.6 6.8 3.6 4 0 0 4 4 4 3 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|289580658|ref|YP_003479124.1| - 0.00013 21.5 5.1 2.8 7.7 0.0 3.7 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|289580658|ref|YP_003479124.1| - 0.0002 22.0 2.3 0.14 12.9 1.8 2.6 2 1 1 3 3 3 1 zinc-ribbon family TF_Zn_Ribbon PF08271.12 gi|289580658|ref|YP_003479124.1| - 0.00022 20.7 11.2 0.14 11.7 3.5 3.4 3 0 0 3 3 3 2 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|289580658|ref|YP_003479124.1| - 0.00054 19.8 9.3 0.18 11.8 0.0 4.1 3 1 0 3 3 3 1 Nudix N-terminal Lar_restr_allev PF14354.6 gi|289580658|ref|YP_003479124.1| - 0.013 15.9 8.3 1.2 9.6 0.1 3.2 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|289580658|ref|YP_003479124.1| - 0.02 15.0 11.0 0.54 10.4 0.1 3.5 2 1 1 3 3 3 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|289580658|ref|YP_003479124.1| - 0.027 13.9 1.1 7.9 6.0 0.2 2.7 2 0 0 2 2 2 0 Mu-like prophage protein Com RecR PF02132.15 gi|289580658|ref|YP_003479124.1| - 0.096 12.3 7.0 4.2 7.0 1.5 3.2 3 0 0 3 3 3 0 RecR protein zf-TFIIB PF13453.6 gi|289580658|ref|YP_003479124.1| - 0.11 11.9 6.0 1.3 8.4 0.1 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.16 gi|289580658|ref|YP_003479124.1| - 0.25 11.4 0.1 0.25 11.4 0.1 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain ATP-synt_A PF00119.20 gi|289580658|ref|YP_003479124.1| - 0.34 10.8 5.1 0.42 10.5 5.1 1.1 1 0 0 1 1 1 0 ATP synthase A chain OrfB_Zn_ribbon PF07282.11 gi|289580658|ref|YP_003479124.1| - 0.35 10.8 8.0 14 5.7 0.2 3.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|289580658|ref|YP_003479124.1| - 1 9.5 8.7 17 5.6 0.3 3.8 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zinc-ribbons_6 PF07191.12 gi|289580658|ref|YP_003479124.1| - 1.1 9.3 8.1 20 5.2 0.7 2.8 1 1 2 3 3 3 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|289580658|ref|YP_003479124.1| - 2 8.6 13.2 11 6.3 0.2 3.9 3 1 1 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_recom PF13408.6 gi|289580658|ref|YP_003479124.1| - 3 8.4 6.3 33 5.1 0.3 3.4 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain Cys_rich_CPXG PF14255.6 gi|289580658|ref|YP_003479124.1| - 3.7 7.5 13.1 1.9 8.5 0.3 3.8 4 0 0 4 4 4 0 Cysteine-rich CPXCG zf-ISL3 PF14690.6 gi|289580658|ref|YP_003479124.1| - 4.5 8.0 10.8 15 6.3 2.1 3.4 3 1 1 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|289580658|ref|YP_003479124.1| - 4.9 7.2 6.2 53 3.9 0.0 2.6 2 1 0 2 2 2 0 CpXC protein zf-IS66 PF13005.7 gi|289580658|ref|YP_003479124.1| - 5.2 7.5 12.3 9.4 6.7 0.1 3.8 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF2116 PF09889.9 gi|289580658|ref|YP_003479124.1| - 7 6.7 8.8 14 5.7 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTP_transferase PF00483.23 gi|289580659|ref|YP_003479125.1| - 6.3e-17 62.0 0.0 2e-11 43.9 0.0 2.0 1 1 1 2 2 2 2 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289580659|ref|YP_003479125.1| - 5.2e-10 39.9 0.0 7.4e-10 39.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|289580659|ref|YP_003479125.1| - 1.5e-05 24.9 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tubulin PF00091.25 gi|289580660|ref|YP_003479126.1| - 1.8e-37 129.5 3.2 5.3e-37 127.9 3.2 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|289580660|ref|YP_003479126.1| - 1.6e-35 121.2 5.1 2e-35 121.0 0.7 3.0 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ZT_dimer PF16916.5 gi|289580660|ref|YP_003479126.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ThiF PF00899.21 gi|289580660|ref|YP_003479126.1| - 0.081 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|289580660|ref|YP_003479126.1| - 0.12 12.2 0.0 0.47 10.3 0.0 2.0 1 0 0 1 1 1 0 Csm1 subunit domain B RHH_1 PF01402.21 gi|289580661|ref|YP_003479127.1| - 1.3e-07 31.3 0.1 1.7e-07 30.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|289580661|ref|YP_003479127.1| - 4e-05 23.8 0.0 4.3e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DZR PF12773.7 gi|289580662|ref|YP_003479128.1| - 6.4e-08 32.5 21.3 9.1e-06 25.6 10.5 2.0 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289580662|ref|YP_003479128.1| - 3.9e-06 26.4 15.8 0.00036 20.1 5.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|289580662|ref|YP_003479128.1| - 2e-05 25.3 9.9 0.0002 22.1 1.7 2.3 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|289580662|ref|YP_003479128.1| - 3e-05 23.3 10.8 0.0015 17.9 3.8 2.5 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.21 gi|289580662|ref|YP_003479128.1| - 0.0033 17.3 3.8 0.0084 16.0 1.7 2.6 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-NADH-PPase PF09297.11 gi|289580662|ref|YP_003479128.1| - 0.017 14.8 9.0 1.4 8.7 0.1 3.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|289580662|ref|YP_003479128.1| - 0.056 13.0 4.3 9.1 6.0 0.1 3.6 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|289580662|ref|YP_003479128.1| - 0.15 12.2 9.9 0.17 12.0 3.1 3.0 2 1 1 3 3 3 0 Zinc ribbon domain zf_C2H2_10 PF18414.1 gi|289580662|ref|YP_003479128.1| - 0.17 11.5 1.5 40 3.9 0.2 3.2 3 0 0 3 3 3 0 C2H2 type zinc-finger HypA PF01155.19 gi|289580662|ref|YP_003479128.1| - 0.33 11.0 11.0 0.18 11.9 2.7 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|289580662|ref|YP_003479128.1| - 0.36 10.9 9.3 1.3 9.1 6.5 2.2 1 1 1 2 2 2 0 zinc-ribbons Cys_rich_KTR PF14205.6 gi|289580662|ref|YP_003479128.1| - 0.62 9.9 2.9 19 5.2 0.3 2.4 2 0 0 2 2 2 0 Cysteine-rich KTR PCM1_C PF15717.5 gi|289580662|ref|YP_003479128.1| - 0.72 8.5 6.2 0.91 8.1 6.2 1.0 1 0 0 1 1 1 0 Pericentriolar material 1 C terminus NOB1_Zn_bind PF08772.11 gi|289580662|ref|YP_003479128.1| - 0.75 10.0 10.8 0.97 9.6 3.7 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.11 gi|289580662|ref|YP_003479128.1| - 1.5 8.8 13.1 26 4.8 13.1 2.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|289580662|ref|YP_003479128.1| - 2.5 8.1 13.0 3.7 7.6 2.0 3.6 3 0 0 3 3 3 0 Nudix N-terminal zf-C3HC4_3 PF13920.6 gi|289580662|ref|YP_003479128.1| - 2.6 8.0 7.4 0.66 9.9 1.3 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_SprT PF17283.2 gi|289580662|ref|YP_003479128.1| - 2.8 7.9 13.3 12 5.9 0.3 4.0 3 1 1 4 4 4 0 SprT-like zinc ribbon domain DUF1610 PF07754.11 gi|289580662|ref|YP_003479128.1| - 4.2 7.4 12.9 0.29 11.1 1.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) PolC_DP2 PF03833.13 gi|289580662|ref|YP_003479128.1| - 4.9 4.9 7.3 6.2 4.6 7.3 1.5 1 1 0 1 1 1 0 DNA polymerase II large subunit DP2 HalOD1 PF18545.1 gi|289580663|ref|YP_003479129.1| - 5.5e-20 71.4 0.3 6.9e-20 71.1 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF5631 PF18645.1 gi|289580663|ref|YP_003479129.1| - 0.068 13.6 0.2 0.085 13.2 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5631) eIF-5_eIF-2B PF01873.17 gi|289580665|ref|YP_003479131.1| - 8.4e-33 112.7 0.0 1.3e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|289580665|ref|YP_003479131.1| - 2.1e-08 34.1 0.7 4.4e-08 33.0 0.7 1.6 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.17 gi|289580665|ref|YP_003479131.1| - 0.024 14.9 0.1 0.05 13.9 0.1 1.6 1 0 0 1 1 1 0 Carbohydrate binding domain Lar_restr_allev PF14354.6 gi|289580665|ref|YP_003479131.1| - 0.036 14.4 0.5 0.82 10.1 0.4 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|289580665|ref|YP_003479131.1| - 0.073 13.2 0.3 0.15 12.2 0.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|289580665|ref|YP_003479131.1| - 0.085 12.8 1.8 0.23 11.4 1.8 1.7 1 0 0 1 1 1 0 Nudix N-terminal Hydrolase PF00702.26 gi|289580666|ref|YP_003479132.1| - 3e-09 37.5 0.1 4.9e-09 36.8 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|289580666|ref|YP_003479132.1| - 5.2e-06 26.7 0.0 7.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289580666|ref|YP_003479132.1| - 6e-06 26.2 0.1 1.4e-05 25.1 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289580666|ref|YP_003479132.1| - 0.014 15.8 0.1 0.028 14.8 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase CobD_Cbib PF03186.13 gi|289580667|ref|YP_003479133.1| - 9.4e-79 264.5 10.1 9.4e-79 264.5 10.1 1.4 1 1 1 2 2 2 1 CobD/Cbib protein Oleosin PF01277.17 gi|289580667|ref|YP_003479133.1| - 7.5 6.3 10.3 0.29 10.9 0.8 3.0 3 0 0 3 3 3 0 Oleosin CobS PF02654.15 gi|289580668|ref|YP_003479134.1| - 4.6e-40 138.0 16.6 5.3e-40 137.8 16.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|289580669|ref|YP_003479135.1| - 5.2e-18 65.9 0.4 7.7e-18 65.4 0.4 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|289580669|ref|YP_003479135.1| - 1.6e-06 28.0 0.1 3.2e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|289580669|ref|YP_003479135.1| - 0.0034 17.0 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|289580669|ref|YP_003479135.1| - 0.012 15.6 0.0 0.083 12.8 0.0 2.1 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.21 gi|289580671|ref|YP_003479137.1| - 4e-41 141.4 0.0 5e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|289580671|ref|YP_003479137.1| - 2.2e-05 24.0 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|289580671|ref|YP_003479137.1| - 0.00095 17.8 0.0 0.0013 17.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Trypan_PARP PF05887.11 gi|289580671|ref|YP_003479137.1| - 0.013 15.5 10.6 0.034 14.1 10.6 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Beta_elim_lyase PF01212.21 gi|289580671|ref|YP_003479137.1| - 0.18 11.1 0.0 0.4 9.9 0.0 1.6 1 0 0 1 1 1 0 Beta-eliminating lyase CbiZ PF01955.18 gi|289580672|ref|YP_003479138.1| - 2.3e-40 138.7 3.2 2.3e-40 138.7 3.2 1.4 2 0 0 2 2 2 1 Adenosylcobinamide amidohydrolase MamL-1 PF09596.10 gi|289580673|ref|YP_003479139.1| - 0.56 10.5 2.9 6 7.2 0.1 2.2 2 0 0 2 2 2 0 MamL-1 domain TRM13 PF05206.14 gi|289580674|ref|YP_003479140.1| - 0.06 12.9 0.2 0.063 12.8 0.2 1.1 1 0 0 1 1 1 0 Methyltransferase TRM13 Rhodanese PF00581.20 gi|289580675|ref|YP_003479141.1| - 4.5e-33 114.0 0.4 1e-16 61.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain FAA_hydrolase PF01557.18 gi|289580676|ref|YP_003479142.1| - 2.6e-47 161.3 0.0 3.1e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|289580676|ref|YP_003479142.1| - 0.0003 21.6 0.1 0.0013 19.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2437) DUF4405 PF14358.6 gi|289580677|ref|YP_003479143.1| - 0.68 10.5 5.3 2.7 8.6 5.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4405) CxxCxxCC PF03692.15 gi|289580679|ref|YP_003479145.1| - 3.4e-06 27.7 0.9 1.1e-05 26.1 1.0 1.8 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain eIF-1a PF01176.19 gi|289580680|ref|YP_003479146.1| - 3.2e-19 68.5 0.1 3.8e-19 68.3 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Amino_oxidase PF01593.24 gi|289580681|ref|YP_003479147.1| - 9.9e-34 117.4 0.2 3.5e-33 115.6 0.2 1.8 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|289580681|ref|YP_003479147.1| - 1.1e-16 60.8 0.1 3.8e-16 59.1 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|289580681|ref|YP_003479147.1| - 3.9e-10 39.8 5.0 8.8e-09 35.4 5.0 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|289580681|ref|YP_003479147.1| - 6e-07 29.9 1.6 1.3e-05 25.7 0.3 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|289580681|ref|YP_003479147.1| - 3.3e-06 26.6 2.5 1.6e-05 24.3 0.2 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|289580681|ref|YP_003479147.1| - 4.6e-06 26.3 0.0 7.1e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289580681|ref|YP_003479147.1| - 1.1e-05 24.8 1.9 1.8e-05 24.0 1.9 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|289580681|ref|YP_003479147.1| - 6.5e-05 22.3 0.3 0.0001 21.7 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|289580681|ref|YP_003479147.1| - 0.00032 19.5 0.0 0.0069 15.1 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|289580681|ref|YP_003479147.1| - 0.0024 17.2 0.1 0.021 14.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|289580681|ref|YP_003479147.1| - 0.003 16.8 0.4 0.0061 15.8 0.4 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|289580681|ref|YP_003479147.1| - 0.0086 16.5 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|289580681|ref|YP_003479147.1| - 0.02 14.2 0.2 0.032 13.5 0.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MCRA PF06100.11 gi|289580681|ref|YP_003479147.1| - 0.036 12.9 0.0 0.047 12.5 0.0 1.1 1 0 0 1 1 1 0 MCRA family GIDA PF01134.22 gi|289580681|ref|YP_003479147.1| - 0.046 12.8 1.1 0.071 12.2 1.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|289580681|ref|YP_003479147.1| - 0.12 11.2 0.4 0.17 10.7 0.4 1.1 1 0 0 1 1 1 0 Tryptophan halogenase UbiA PF01040.18 gi|289580682|ref|YP_003479148.1| - 2.5e-26 92.5 21.5 2.5e-26 92.5 20.9 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Caroten_synth PF04240.12 gi|289580683|ref|YP_003479149.1| - 5.9e-67 225.6 16.7 5.9e-67 225.6 16.7 1.8 2 0 0 2 2 2 1 Carotenoid biosynthesis protein SQS_PSY PF00494.19 gi|289580684|ref|YP_003479150.1| - 2.3e-64 217.4 5.3 2.9e-64 217.1 5.3 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase BrnT_toxin PF04365.13 gi|289580684|ref|YP_003479150.1| - 0.023 15.0 0.1 0.08 13.3 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Saccharop_dh_N PF04455.12 gi|289580685|ref|YP_003479151.1| - 9.2e-35 119.1 0.0 2e-34 118.0 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|289580685|ref|YP_003479151.1| - 0.0005 19.8 0.2 0.0025 17.5 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|289580685|ref|YP_003479151.1| - 0.0011 18.2 0.0 0.013 14.8 0.0 2.1 1 1 1 2 2 2 1 Deoxyhypusine synthase HypA PF01155.19 gi|289580686|ref|YP_003479152.1| - 0.011 15.8 0.3 0.011 15.7 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|289580686|ref|YP_003479152.1| - 0.011 15.9 2.3 0.018 15.1 2.3 1.4 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|289580686|ref|YP_003479152.1| - 0.017 14.6 2.2 0.61 9.7 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|289580686|ref|YP_003479152.1| - 0.019 14.7 2.8 0.69 9.7 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1 PF03811.13 gi|289580686|ref|YP_003479152.1| - 0.091 12.5 5.8 0.23 11.2 0.2 2.3 2 0 0 2 2 2 0 InsA N-terminal domain GTPase_binding PF09027.10 gi|289580686|ref|YP_003479152.1| - 0.11 12.4 0.8 0.21 11.6 0.8 1.4 1 1 0 1 1 1 0 GTPase binding zinc_ribbon_5 PF13719.6 gi|289580686|ref|YP_003479152.1| - 0.42 10.4 4.0 0.68 9.7 0.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|289580686|ref|YP_003479152.1| - 1.2 9.0 5.3 11 6.0 0.9 2.6 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO SelR PF01641.18 gi|289580687|ref|YP_003479153.1| - 1.6e-53 179.9 0.0 2e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 SelR domain HECT_2 PF09814.9 gi|289580687|ref|YP_003479153.1| - 0.014 14.3 0.0 1.8 7.4 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Yippee-Mis18 PF03226.14 gi|289580687|ref|YP_003479153.1| - 0.027 14.7 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_10 PF10058.9 gi|289580687|ref|YP_003479153.1| - 0.043 13.6 0.4 2.5 7.9 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|289580687|ref|YP_003479153.1| - 0.16 11.5 2.4 7.6 6.1 0.1 3.0 2 0 0 2 2 2 0 TFIIB zinc-binding Virul_fac_BrkB PF03631.15 gi|289580689|ref|YP_003479155.1| - 1.7e-32 113.0 30.8 2.2e-32 112.7 30.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Exo_endo_phos PF03372.23 gi|289580690|ref|YP_003479156.1| - 8e-10 38.6 0.9 1.1e-09 38.2 0.9 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|289580690|ref|YP_003479156.1| - 0.0018 18.1 0.0 0.027 14.3 0.0 2.3 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase AMPK1_CBM PF16561.5 gi|289580690|ref|YP_003479156.1| - 0.037 14.2 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Glycogen recognition site of AMP-activated protein kinase PLDc_2 PF13091.6 gi|289580691|ref|YP_003479157.1| - 2e-08 34.2 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|289580691|ref|YP_003479157.1| - 0.00064 19.1 0.0 0.00084 18.7 0.0 1.1 1 0 0 1 1 1 1 NgoFVII restriction endonuclease BAT PF15915.5 gi|289580692|ref|YP_003479158.1| - 4.5e-27 94.8 17.6 2.2e-18 66.6 4.4 6.2 5 1 0 5 5 5 2 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|289580692|ref|YP_003479158.1| - 6.7e-22 78.3 11.8 2.3e-12 47.4 1.4 3.8 3 1 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|289580692|ref|YP_003479158.1| - 3e-15 55.8 0.0 7.7e-15 54.4 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|289580692|ref|YP_003479158.1| - 9.8e-12 45.3 2.2 1.7e-05 25.2 0.1 3.3 3 1 0 3 3 3 2 GAF domain GAF PF01590.26 gi|289580692|ref|YP_003479158.1| - 1.6e-09 38.5 0.2 0.0017 19.0 0.1 3.0 3 0 0 3 3 2 2 GAF domain PAS_4 PF08448.10 gi|289580692|ref|YP_003479158.1| - 2.5e-09 37.3 5.9 2.7e-07 30.8 1.5 3.9 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|289580692|ref|YP_003479158.1| - 2.7e-05 24.3 0.1 0.00088 19.5 0.0 2.8 2 0 0 2 2 2 1 PAS domain Neisseria_TspB PF05616.13 gi|289580692|ref|YP_003479158.1| - 0.0018 16.9 11.8 0.0029 16.2 11.8 1.2 1 0 0 1 1 1 1 Neisseria meningitidis TspB protein Response_reg PF00072.24 gi|289580692|ref|YP_003479158.1| - 0.0043 17.2 0.0 0.013 15.7 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|289580692|ref|YP_003479158.1| - 0.16 12.0 1.7 6.2 6.9 0.1 3.2 3 1 0 3 3 3 0 PAS fold DUF484 PF04340.12 gi|289580692|ref|YP_003479158.1| - 0.18 11.5 3.7 0.2 11.3 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function, DUF484 IATP PF04568.12 gi|289580692|ref|YP_003479158.1| - 0.18 12.2 0.8 10 6.6 0.0 3.3 2 0 0 2 2 2 0 Mitochondrial ATPase inhibitor, IATP DUF722 PF05263.11 gi|289580692|ref|YP_003479158.1| - 0.25 11.6 1.5 0.69 10.1 1.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF722) SAPS PF04499.15 gi|289580692|ref|YP_003479158.1| - 2.9 6.5 6.6 3 6.5 0.5 2.2 2 0 0 2 2 2 0 SIT4 phosphatase-associated protein DZR PF12773.7 gi|289580693|ref|YP_003479159.1| - 0.002 18.1 0.6 0.0022 18.0 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|289580693|ref|YP_003479159.1| - 0.002 18.2 0.3 0.002 18.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Desulfoferrod_N PF06397.12 gi|289580693|ref|YP_003479159.1| - 0.0029 17.2 1.6 0.0055 16.3 1.6 1.6 1 1 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|289580693|ref|YP_003479159.1| - 0.0046 17.1 0.9 0.0065 16.6 0.9 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|289580693|ref|YP_003479159.1| - 0.034 14.1 0.2 0.04 13.9 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type NOB1_Zn_bind PF08772.11 gi|289580693|ref|YP_003479159.1| - 0.056 13.6 0.2 0.065 13.4 0.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TackOD1 PF18551.1 gi|289580693|ref|YP_003479159.1| - 0.062 13.0 0.3 0.093 12.4 0.3 1.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Rubredoxin_2 PF18073.1 gi|289580693|ref|YP_003479159.1| - 0.11 12.3 2.0 0.2 11.4 2.0 1.5 1 1 0 1 1 1 0 Rubredoxin metal binding domain Carb_kinase PF01256.17 gi|289580694|ref|YP_003479160.1| - 1.4e-35 122.9 0.4 1.9e-35 122.5 0.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|289580694|ref|YP_003479160.1| - 0.0024 17.3 3.5 0.0039 16.6 0.7 2.1 1 1 0 2 2 2 1 Hydroxyethylthiazole kinase family Methyltransf_11 PF08241.12 gi|289580695|ref|YP_003479161.1| - 4.2e-23 81.8 0.0 7.4e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289580695|ref|YP_003479161.1| - 1.3e-19 70.6 0.0 2.3e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580695|ref|YP_003479161.1| - 2.8e-16 59.8 0.0 3.6e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289580695|ref|YP_003479161.1| - 4.8e-16 58.9 0.0 6.4e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580695|ref|YP_003479161.1| - 5.4e-14 52.7 0.0 9e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289580695|ref|YP_003479161.1| - 2.9e-12 46.4 0.0 3.7e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|289580695|ref|YP_003479161.1| - 1.8e-06 27.7 0.0 2.6e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|289580695|ref|YP_003479161.1| - 0.00022 20.8 0.0 0.00048 19.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|289580695|ref|YP_003479161.1| - 0.0013 18.3 0.0 0.067 12.6 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_29 PF03141.16 gi|289580695|ref|YP_003479161.1| - 0.0077 14.8 0.0 0.0096 14.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|289580695|ref|YP_003479161.1| - 0.0087 15.0 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DUF938 PF06080.12 gi|289580695|ref|YP_003479161.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_17 PF12692.7 gi|289580695|ref|YP_003479161.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase Methyltransf_8 PF05148.15 gi|289580695|ref|YP_003479161.1| - 0.059 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase DEAD_assoc PF08494.11 gi|289580696|ref|YP_003479162.1| - 8e-50 169.3 2.1 1.5e-49 168.4 0.6 2.3 2 1 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|289580696|ref|YP_003479162.1| - 1.2e-22 80.5 0.0 9.9e-16 58.0 0.0 3.0 3 0 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|289580696|ref|YP_003479162.1| - 9.4e-19 67.8 0.1 2.6e-17 63.2 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Intein_splicing PF14890.6 gi|289580696|ref|YP_003479162.1| - 2.2e-16 60.0 0.0 4.4e-16 59.1 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|289580696|ref|YP_003479162.1| - 0.0003 21.1 1.7 0.016 15.5 0.2 2.7 2 0 0 2 2 2 1 LAGLIDADG-like domain HTH_31 PF13560.6 gi|289580696|ref|YP_003479162.1| - 0.011 16.1 0.5 0.39 11.1 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain ResIII PF04851.15 gi|289580696|ref|YP_003479162.1| - 0.035 14.1 0.5 1.1 9.2 0.0 3.2 4 0 0 4 4 4 0 Type III restriction enzyme, res subunit SHE3 PF17078.5 gi|289580696|ref|YP_003479162.1| - 0.073 12.8 0.2 0.5 10.0 0.1 2.2 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 HTH_26 PF13443.6 gi|289580696|ref|YP_003479162.1| - 0.17 12.4 0.0 0.54 10.7 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MelC1 PF06236.11 gi|289580696|ref|YP_003479162.1| - 8 6.6 6.9 18 5.4 6.9 1.5 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 Amidohydro_2 PF04909.14 gi|289580697|ref|YP_003479163.1| - 2.7e-50 171.8 0.8 3.4e-50 171.5 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|289580697|ref|YP_003479163.1| - 0.012 15.0 0.0 0.03 13.7 0.0 1.6 2 0 0 2 2 2 0 TatD related DNase IclR PF01614.18 gi|289580698|ref|YP_003479164.1| - 3e-34 117.6 0.0 7.3e-34 116.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289580698|ref|YP_003479164.1| - 1.9e-12 46.8 1.5 1.9e-12 46.8 1.5 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|289580698|ref|YP_003479164.1| - 1.3e-06 28.1 0.2 3.4e-06 26.9 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|289580698|ref|YP_003479164.1| - 9.3e-06 25.6 0.2 2e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289580698|ref|YP_003479164.1| - 7.6e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289580698|ref|YP_003479164.1| - 0.0016 18.4 0.0 0.0036 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289580698|ref|YP_003479164.1| - 0.0027 17.6 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289580698|ref|YP_003479164.1| - 0.0029 17.4 0.0 0.0067 16.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|289580698|ref|YP_003479164.1| - 0.01 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_1 PF00126.27 gi|289580698|ref|YP_003479164.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|289580698|ref|YP_003479164.1| - 0.015 15.1 0.1 0.032 14.0 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289580698|ref|YP_003479164.1| - 0.016 15.2 0.3 0.071 13.1 0.1 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|289580698|ref|YP_003479164.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain RP-C PF03428.13 gi|289580698|ref|YP_003479164.1| - 0.035 13.8 0.1 0.055 13.1 0.1 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|289580698|ref|YP_003479164.1| - 0.038 14.3 0.0 0.085 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|289580698|ref|YP_003479164.1| - 0.047 13.9 0.0 0.097 12.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|289580698|ref|YP_003479164.1| - 0.056 13.4 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_40 PF14493.6 gi|289580698|ref|YP_003479164.1| - 0.079 13.4 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|289580698|ref|YP_003479164.1| - 0.16 11.8 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HD PF01966.22 gi|289580699|ref|YP_003479165.1| - 9.5e-10 38.8 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 HD domain EthD PF07110.11 gi|289580700|ref|YP_003479166.1| - 1e-25 90.7 4.4 6.1e-12 46.5 0.2 3.2 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|289580700|ref|YP_003479166.1| - 2.3e-23 82.8 1.9 1.4e-10 41.6 0.1 3.9 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase ABM PF03992.16 gi|289580700|ref|YP_003479166.1| - 0.00012 22.1 0.1 0.75 10.0 0.0 2.8 2 2 0 2 2 2 2 Antibiotic biosynthesis monooxygenase DUF4543 PF15076.6 gi|289580700|ref|YP_003479166.1| - 0.09 12.9 0.2 3.3 7.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4543) Epimerase PF01370.21 gi|289580701|ref|YP_003479167.1| - 1.2e-43 149.3 0.4 1.6e-43 148.9 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|289580701|ref|YP_003479167.1| - 2.8e-41 142.0 0.1 9.1e-41 140.3 0.1 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|289580701|ref|YP_003479167.1| - 3.6e-20 72.1 0.0 4.8e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|289580701|ref|YP_003479167.1| - 5.2e-13 49.3 0.2 1e-12 48.3 0.2 1.5 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|289580701|ref|YP_003479167.1| - 6.3e-12 45.2 2.3 9.4e-12 44.6 2.3 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|289580701|ref|YP_003479167.1| - 1e-10 41.2 0.0 9.3e-10 38.1 0.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|289580701|ref|YP_003479167.1| - 4.2e-10 39.2 0.6 6.5e-08 32.1 0.6 2.3 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|289580701|ref|YP_003479167.1| - 7.2e-07 28.9 0.3 1.4e-06 27.9 0.3 1.6 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580701|ref|YP_003479167.1| - 4.4e-06 26.7 0.5 1.1e-05 25.4 0.5 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|289580701|ref|YP_003479167.1| - 0.0007 19.2 0.4 0.0015 18.1 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family adh_short_C2 PF13561.6 gi|289580701|ref|YP_003479167.1| - 0.0015 18.1 1.0 0.0035 16.9 0.3 1.9 2 1 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase 2-Hacid_dh_C PF02826.19 gi|289580701|ref|YP_003479167.1| - 0.02 14.3 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|289580701|ref|YP_003479167.1| - 0.13 12.4 0.2 0.57 10.3 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 4HBT PF03061.22 gi|289580702|ref|YP_003479168.1| - 1.5e-15 57.3 0.3 2e-15 56.9 0.3 1.1 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|289580702|ref|YP_003479168.1| - 0.00021 21.4 0.0 0.00028 21.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Lar_restr_allev PF14354.6 gi|289580703|ref|YP_003479169.1| - 0.017 15.4 3.7 0.021 15.2 3.7 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.10 gi|289580703|ref|YP_003479169.1| - 0.083 13.0 1.2 0.11 12.6 1.2 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|289580703|ref|YP_003479169.1| - 0.11 12.0 6.6 0.65 9.6 6.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2321 PF10083.9 gi|289580703|ref|YP_003479169.1| - 0.14 11.8 1.8 0.16 11.6 1.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-ISL3 PF14690.6 gi|289580703|ref|YP_003479169.1| - 0.19 12.4 3.5 0.31 11.8 3.5 1.4 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FeS_assembly_P PF01883.19 gi|289580704|ref|YP_003479170.1| - 1.1e-20 73.6 0.1 1.6e-20 73.0 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|289580705|ref|YP_003479171.1| - 4.2e-57 193.3 0.2 6.4e-57 192.7 0.2 1.3 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|289580705|ref|YP_003479171.1| - 0.0034 17.1 0.5 0.0068 16.1 0.5 1.6 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.17 gi|289580705|ref|YP_003479171.1| - 0.014 15.8 0.7 0.068 13.6 0.4 2.3 1 1 0 1 1 1 0 Rubrerythrin HTH_23 PF13384.6 gi|289580705|ref|YP_003479171.1| - 0.13 12.1 0.1 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain FliT PF05400.13 gi|289580705|ref|YP_003479171.1| - 0.3 11.9 5.4 3 8.7 0.7 2.6 2 0 0 2 2 2 0 Flagellar protein FliT PaaB PF06243.11 gi|289580706|ref|YP_003479172.1| - 7.8e-19 67.7 0.0 1e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|289580707|ref|YP_003479173.1| - 7.5e-67 225.2 0.1 8.9e-67 225.0 0.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.12 gi|289580708|ref|YP_003479174.1| - 1e-18 66.8 0.0 1.5e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289580708|ref|YP_003479174.1| - 2.7e-07 30.6 2.6 3.9e-07 30.1 2.6 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|289580708|ref|YP_003479174.1| - 0.009 15.6 0.1 0.041 13.4 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|289580708|ref|YP_003479174.1| - 0.028 14.0 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|289580708|ref|YP_003479174.1| - 0.028 14.6 0.4 6.3 7.0 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|289580708|ref|YP_003479174.1| - 0.036 14.0 1.2 3.6 7.5 0.1 2.8 3 0 0 3 3 3 0 MarR family HTH_30 PF13556.6 gi|289580708|ref|YP_003479174.1| - 0.045 13.6 0.0 0.18 11.6 0.0 2.0 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_1 PF00126.27 gi|289580708|ref|YP_003479174.1| - 0.05 13.5 0.2 0.12 12.3 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.6 gi|289580708|ref|YP_003479174.1| - 0.14 12.0 1.1 0.68 9.8 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain AMP-binding_C_2 PF14535.6 gi|289580709|ref|YP_003479175.1| - 5.2e-22 78.0 0.0 1.1e-21 76.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|289580709|ref|YP_003479175.1| - 4.6e-15 55.1 1.1 3.1e-14 52.4 1.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|289580709|ref|YP_003479175.1| - 0.00069 18.6 0.0 0.0011 17.9 0.0 1.5 2 0 0 2 2 2 1 GH3 auxin-responsive promoter LuxE PF04443.12 gi|289580709|ref|YP_003479175.1| - 0.0089 15.1 0.0 0.25 10.3 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE DDOST_48kD PF03345.14 gi|289580709|ref|YP_003479175.1| - 0.17 10.7 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 Oligosaccharyltransferase 48 kDa subunit beta MaoC_dehydratas PF01575.19 gi|289580710|ref|YP_003479176.1| - 1.1e-19 70.2 0.0 1.5e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|289580710|ref|YP_003479176.1| - 8.8e-06 25.9 0.3 3.2e-05 24.1 0.3 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase ECH_1 PF00378.20 gi|289580711|ref|YP_003479177.1| - 5.7e-54 183.1 0.0 6.9e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289580711|ref|YP_003479177.1| - 1.8e-28 100.1 0.0 2e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase HTH_24 PF13412.6 gi|289580713|ref|YP_003479179.1| - 0.00062 19.3 0.1 0.073 12.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|289580713|ref|YP_003479179.1| - 0.0052 17.0 0.1 0.01 16.1 0.1 1.4 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.6 gi|289580713|ref|YP_003479179.1| - 0.019 15.6 0.1 0.056 14.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain 3HCDH_N PF02737.18 gi|289580714|ref|YP_003479180.1| - 6.9e-56 189.0 0.0 9.8e-56 188.5 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|289580714|ref|YP_003479180.1| - 1.3e-55 188.5 0.0 1.7e-55 188.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|289580714|ref|YP_003479180.1| - 1e-44 151.0 0.2 1.2e-21 77.1 0.0 2.8 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|289580714|ref|YP_003479180.1| - 2.2e-30 106.3 0.0 2.2e-25 89.9 0.0 2.5 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase MORN PF02493.20 gi|289580714|ref|YP_003479180.1| - 0.066 13.1 0.2 0.79 9.7 0.6 2.5 2 0 0 2 2 2 0 MORN repeat APH PF01636.23 gi|289580715|ref|YP_003479181.1| - 4e-42 144.8 5.9 5.8e-42 144.3 5.9 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|289580715|ref|YP_003479181.1| - 0.002 17.5 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase Cyt_bd_oxida_II PF02322.15 gi|289580716|ref|YP_003479182.1| - 8.6e-68 228.9 34.2 9.8e-68 228.7 34.2 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II GDH_N PF12466.8 gi|289580716|ref|YP_003479182.1| - 0.046 13.9 1.4 0.12 12.6 0.5 1.9 1 1 1 2 2 2 0 Glutamate dehydrogenase N terminal DUF4239 PF14023.6 gi|289580716|ref|YP_003479182.1| - 1.4 8.6 7.4 0.71 9.6 4.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) Cyt_bd_oxida_I PF01654.17 gi|289580717|ref|YP_003479183.1| - 4.1e-146 486.9 24.8 4.8e-146 486.6 24.8 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Pox_A14 PF05767.12 gi|289580717|ref|YP_003479183.1| - 0.00064 19.8 0.8 0.79 9.9 0.0 3.3 3 0 0 3 3 3 2 Poxvirus virion envelope protein A14 JSRP PF15312.6 gi|289580717|ref|YP_003479183.1| - 0.0026 17.6 0.0 0.0066 16.3 0.0 1.6 1 0 0 1 1 1 1 Junctional sarcoplasmic reticulum protein DUF4134 PF13572.6 gi|289580717|ref|YP_003479183.1| - 0.03 14.6 0.1 0.03 14.6 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4134) Romo1 PF10247.9 gi|289580717|ref|YP_003479183.1| - 0.035 14.5 4.7 0.12 12.7 4.7 2.0 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 DUF1240 PF06836.12 gi|289580717|ref|YP_003479183.1| - 0.66 10.5 2.3 1.4 9.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1240) HILPDA PF15220.6 gi|289580718|ref|YP_003479184.1| - 0.15 12.2 0.0 6.6 6.9 0.0 2.1 1 1 1 2 2 2 0 Hypoxia-inducible lipid droplet-associated HTH_10 PF04967.12 gi|289580719|ref|YP_003479185.1| - 6e-17 61.2 0.1 1.1e-16 60.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|289580719|ref|YP_003479185.1| - 0.00016 21.4 0.4 0.00079 19.3 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289580719|ref|YP_003479185.1| - 0.00022 21.2 0.0 0.00061 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289580719|ref|YP_003479185.1| - 0.0003 20.6 0.0 0.0034 17.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|289580719|ref|YP_003479185.1| - 0.023 14.3 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|289580719|ref|YP_003479185.1| - 0.029 14.2 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_psq PF05225.16 gi|289580719|ref|YP_003479185.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Usp PF00582.26 gi|289580720|ref|YP_003479186.1| - 3.5e-39 134.5 0.7 1.9e-21 77.0 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family HalOD1 PF18545.1 gi|289580721|ref|YP_003479187.1| - 3.4e-13 49.7 0.2 4.6e-13 49.2 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2807 PF10988.8 gi|289580721|ref|YP_003479187.1| - 0.07 12.9 0.1 0.083 12.7 0.1 1.0 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain AA_permease_2 PF13520.6 gi|289580722|ref|YP_003479188.1| - 1.2e-43 149.6 35.4 1.5e-43 149.2 35.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|289580722|ref|YP_003479188.1| - 5.4e-42 144.0 36.6 7.8e-42 143.5 36.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|289580722|ref|YP_003479188.1| - 4.4e-10 40.2 0.1 6.4e-06 26.7 0.0 3.0 2 2 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|289580722|ref|YP_003479188.1| - 3.8 7.7 8.9 0.58 10.3 3.2 2.7 2 0 0 2 2 2 0 C-terminus of AA_permease Spore_permease PF03845.13 gi|289580722|ref|YP_003479188.1| - 8.4 5.1 17.5 9.9 4.9 11.3 3.4 2 1 0 2 2 2 0 Spore germination protein TauE PF01925.19 gi|289580724|ref|YP_003479190.1| - 5.1e-39 134.3 21.7 5.1e-39 134.3 21.7 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3007 PF11460.8 gi|289580724|ref|YP_003479190.1| - 1.1 9.5 4.1 1.1 9.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Rhodanese PF00581.20 gi|289580726|ref|YP_003479192.1| - 4.8e-15 56.0 0.0 1.2e-14 54.7 0.0 1.7 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|289580726|ref|YP_003479192.1| - 1.7e-13 51.0 3.2 3.7e-13 49.9 3.2 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289580726|ref|YP_003479192.1| - 0.0011 18.5 0.5 0.0029 17.2 0.5 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Pyr_redox_2 PF07992.14 gi|289580727|ref|YP_003479193.1| - 9.6e-31 107.1 0.1 1.2e-30 106.8 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289580727|ref|YP_003479193.1| - 7.7e-16 58.2 0.0 1.8e-10 40.6 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289580727|ref|YP_003479193.1| - 9.2e-07 29.3 0.0 0.064 13.8 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289580727|ref|YP_003479193.1| - 4e-05 22.5 1.1 0.017 13.8 0.4 3.0 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|289580727|ref|YP_003479193.1| - 8.3e-05 21.8 0.9 0.016 14.3 0.6 3.1 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|289580727|ref|YP_003479193.1| - 9.8e-05 21.7 0.2 0.0024 17.2 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|289580727|ref|YP_003479193.1| - 9.9e-05 21.6 5.0 0.0023 17.1 1.4 2.6 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|289580727|ref|YP_003479193.1| - 0.0001 22.0 5.2 0.0073 15.9 2.1 3.0 2 1 0 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|289580727|ref|YP_003479193.1| - 0.00024 20.3 0.0 0.003 16.8 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|289580727|ref|YP_003479193.1| - 0.00087 18.6 0.4 0.0061 15.8 0.1 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|289580727|ref|YP_003479193.1| - 0.0026 18.0 0.3 0.02 15.1 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|289580727|ref|YP_003479193.1| - 0.0064 15.9 1.2 0.01 15.3 1.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|289580727|ref|YP_003479193.1| - 0.013 15.5 3.5 0.5 10.3 0.1 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|289580727|ref|YP_003479193.1| - 0.015 14.4 0.2 0.12 11.4 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|289580727|ref|YP_003479193.1| - 0.052 12.8 0.4 0.78 9.0 0.5 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TAL_effector PF03377.13 gi|289580728|ref|YP_003479194.1| - 0.023 15.0 0.1 6.4 7.2 0.0 2.3 2 0 0 2 2 2 0 TAL effector repeat DUF5078 PF16877.5 gi|289580728|ref|YP_003479194.1| - 0.04 14.4 0.0 0.046 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5078) AhpC-TSA PF00578.21 gi|289580729|ref|YP_003479195.1| - 2.6e-30 104.9 0.0 3.6e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289580729|ref|YP_003479195.1| - 1.2e-13 51.0 0.0 1.6e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|289580729|ref|YP_003479195.1| - 4.4e-12 45.6 0.5 9e-12 44.6 0.2 1.7 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|289580729|ref|YP_003479195.1| - 0.065 13.4 0.0 0.086 13.0 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF1641 PF07849.11 gi|289580730|ref|YP_003479196.1| - 7.9e-15 54.5 1.3 2e-14 53.2 1.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) SKA2 PF16740.5 gi|289580730|ref|YP_003479196.1| - 0.0043 16.8 5.5 0.73 9.6 0.2 2.8 1 1 2 3 3 3 2 Spindle and kinetochore-associated protein 2 Tn7_Tnp_TnsA_C PF08721.11 gi|289580730|ref|YP_003479196.1| - 0.005 17.4 5.1 0.35 11.5 0.4 3.4 1 1 2 3 3 3 1 TnsA endonuclease C terminal Nckap1 PF09735.9 gi|289580730|ref|YP_003479196.1| - 0.036 12.0 0.1 0.046 11.7 0.1 1.3 1 0 0 1 1 1 0 Membrane-associated apoptosis protein Laminin_II PF06009.12 gi|289580730|ref|YP_003479196.1| - 0.4 10.7 2.6 1.2 9.2 2.6 1.8 1 1 0 1 1 1 0 Laminin Domain II GAT PF03127.14 gi|289580730|ref|YP_003479196.1| - 4.5 7.7 14.7 12 6.2 3.4 3.9 1 1 2 3 3 3 0 GAT domain Pyr_redox_2 PF07992.14 gi|289580731|ref|YP_003479197.1| - 2.6e-18 66.3 0.0 2.8e-11 43.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|289580731|ref|YP_003479197.1| - 9.8e-06 25.6 0.0 0.02 14.9 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|289580731|ref|YP_003479197.1| - 7.4e-05 21.8 0.1 0.0022 16.9 0.0 2.5 3 0 0 3 3 3 1 Tryptophan halogenase DAO PF01266.24 gi|289580731|ref|YP_003479197.1| - 0.00039 20.1 0.0 0.07 12.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|289580731|ref|YP_003479197.1| - 0.041 14.1 0.0 0.097 12.9 0.0 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Flavoprotein PF02441.19 gi|289580731|ref|YP_003479197.1| - 0.063 13.0 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 0 Flavoprotein NAD_binding_8 PF13450.6 gi|289580731|ref|YP_003479197.1| - 0.15 12.3 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Rhodanese PF00581.20 gi|289580732|ref|YP_003479198.1| - 6.7e-31 107.0 0.1 9.5e-16 58.3 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain HTH_27 PF13463.6 gi|289580732|ref|YP_003479198.1| - 0.00028 21.3 0.0 0.0007 20.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|289580732|ref|YP_003479198.1| - 0.00085 19.2 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|289580732|ref|YP_003479198.1| - 0.0014 18.5 0.0 0.0032 17.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|289580732|ref|YP_003479198.1| - 0.0017 18.4 0.0 0.0045 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HAD_2 PF13419.6 gi|289580733|ref|YP_003479199.1| - 2.1e-19 70.3 0.0 2.4e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580733|ref|YP_003479199.1| - 5e-12 46.6 0.2 4.3e-11 43.5 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289580733|ref|YP_003479199.1| - 1.9e-11 43.9 0.0 4e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like DUF3151 PF11349.8 gi|289580733|ref|YP_003479199.1| - 0.096 12.8 0.2 0.23 11.5 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3151) adh_short_C2 PF13561.6 gi|289580735|ref|YP_003479201.1| - 1.9e-61 207.6 1.3 2.4e-61 207.3 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580735|ref|YP_003479201.1| - 5.5e-58 195.6 0.2 7e-58 195.3 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580735|ref|YP_003479201.1| - 7.7e-13 48.7 0.1 1.1e-12 48.2 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289580735|ref|YP_003479201.1| - 1.7e-05 24.4 0.1 4.3e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|289580735|ref|YP_003479201.1| - 0.0059 17.2 0.1 0.012 16.2 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|289580735|ref|YP_003479201.1| - 0.011 15.6 0.2 0.025 14.5 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|289580735|ref|YP_003479201.1| - 0.013 14.6 0.1 0.038 13.1 0.2 1.7 1 1 1 2 2 2 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|289580735|ref|YP_003479201.1| - 0.016 14.6 0.0 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase Acetyltransf_14 PF03421.16 gi|289580735|ref|YP_003479201.1| - 0.022 14.8 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 YopJ Serine/Threonine acetyltransferase Bac_luciferase PF00296.20 gi|289580736|ref|YP_003479202.1| - 5e-84 282.4 1.2 6.8e-84 282.0 1.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase AIRS_C PF02769.22 gi|289580737|ref|YP_003479203.1| - 1.4e-23 83.7 2.5 2.3e-23 83.0 2.5 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|289580737|ref|YP_003479203.1| - 3.9e-16 59.5 0.9 8.1e-16 58.5 0.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TrkA_N PF02254.18 gi|289580738|ref|YP_003479204.1| - 9.9e-17 61.3 2.2 1.8e-16 60.4 2.2 1.5 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|289580738|ref|YP_003479204.1| - 2.5e-14 53.0 2.8 2.5e-14 53.0 2.8 2.6 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|289580738|ref|YP_003479204.1| - 0.013 14.8 0.0 0.023 13.9 0.0 1.3 1 1 0 1 1 1 0 Ion transport protein Glyco_tran_WecB PF03808.13 gi|289580738|ref|YP_003479204.1| - 0.018 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Epimerase PF01370.21 gi|289580738|ref|YP_003479204.1| - 0.085 12.3 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AAA_11 PF13086.6 gi|289580739|ref|YP_003479205.1| - 2.3e-39 135.8 1.8 8.6e-19 68.3 0.3 3.1 3 1 1 4 4 4 2 AAA domain AAA_12 PF13087.6 gi|289580739|ref|YP_003479205.1| - 2.3e-38 131.8 0.0 3.5e-38 131.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.11 gi|289580739|ref|YP_003479205.1| - 2.4e-20 73.2 0.0 4e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.6 gi|289580739|ref|YP_003479205.1| - 1.3e-18 67.4 1.3 4.2e-18 65.7 1.3 1.9 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|289580739|ref|YP_003479205.1| - 1.1e-13 51.7 0.6 3.6e-13 50.0 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|289580739|ref|YP_003479205.1| - 2.5e-13 50.6 0.1 1.7e-12 47.9 0.1 2.3 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|289580739|ref|YP_003479205.1| - 5.8e-06 26.2 0.0 0.026 14.3 0.0 3.1 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|289580739|ref|YP_003479205.1| - 5.5e-05 22.8 0.0 0.00012 21.7 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.14 gi|289580739|ref|YP_003479205.1| - 5.9e-05 23.0 0.0 0.00024 21.0 0.0 2.1 2 0 0 2 2 2 1 Helicase ResIII PF04851.15 gi|289580739|ref|YP_003479205.1| - 9.7e-05 22.4 0.0 0.00022 21.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|289580739|ref|YP_003479205.1| - 0.00032 21.0 0.2 0.0016 18.7 0.0 2.3 3 1 0 3 3 1 1 AAA domain AAA_16 PF13191.6 gi|289580739|ref|YP_003479205.1| - 0.00063 20.2 3.0 0.0013 19.2 0.4 3.0 2 1 0 2 2 2 1 AAA ATPase domain Cas_Cas4 PF01930.17 gi|289580739|ref|YP_003479205.1| - 0.0015 18.6 0.0 0.0054 16.9 0.0 1.9 2 1 0 2 2 2 1 Domain of unknown function DUF83 DUF4350 PF14258.6 gi|289580739|ref|YP_003479205.1| - 0.0027 18.1 1.1 54 4.3 0.0 5.1 5 0 0 5 5 4 0 Domain of unknown function (DUF4350) PhoH PF02562.16 gi|289580739|ref|YP_003479205.1| - 0.0087 15.5 0.0 0.059 12.8 0.0 2.2 1 1 0 1 1 1 1 PhoH-like protein DUF2075 PF09848.9 gi|289580739|ref|YP_003479205.1| - 0.012 14.8 0.1 0.065 12.5 0.1 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|289580739|ref|YP_003479205.1| - 0.014 15.9 0.2 0.043 14.2 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PDZ_6 PF17820.1 gi|289580739|ref|YP_003479205.1| - 0.021 14.7 0.0 0.068 13.0 0.0 1.8 1 0 0 1 1 1 0 PDZ domain IstB_IS21 PF01695.17 gi|289580739|ref|YP_003479205.1| - 0.027 14.2 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|289580739|ref|YP_003479205.1| - 0.03 13.4 0.0 0.058 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein UvrD_C_2 PF13538.6 gi|289580739|ref|YP_003479205.1| - 0.036 13.9 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain AAA_25 PF13481.6 gi|289580739|ref|YP_003479205.1| - 0.095 12.3 1.8 0.62 9.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|289580739|ref|YP_003479205.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|289580739|ref|YP_003479205.1| - 0.1 12.2 0.1 0.51 9.9 0.0 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|289580739|ref|YP_003479205.1| - 0.11 12.4 0.0 0.39 10.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|289580739|ref|YP_003479205.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|289580739|ref|YP_003479205.1| - 0.2 10.8 0.0 4.6 6.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SPW PF03779.14 gi|289580740|ref|YP_003479206.1| - 3.1e-06 26.7 21.5 6e-05 22.5 6.2 2.7 2 1 0 2 2 2 2 SPW repeat MHYT PF03707.16 gi|289580740|ref|YP_003479206.1| - 0.019 15.1 8.5 0.1 12.7 0.8 2.6 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat PhaG_MnhG_YufB PF03334.14 gi|289580740|ref|YP_003479206.1| - 1.8 8.9 11.0 0.54 10.5 7.3 1.8 2 0 0 2 2 2 0 Na+/H+ antiporter subunit DUF3040 PF11239.8 gi|289580740|ref|YP_003479206.1| - 3.6 7.9 5.4 3.4 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF202 PF02656.15 gi|289580741|ref|YP_003479207.1| - 0.13 12.7 0.6 0.19 12.2 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) HHH_2 PF12826.7 gi|289580742|ref|YP_003479208.1| - 0.00071 19.6 1.1 0.052 13.6 0.8 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF5595 PF18077.1 gi|289580742|ref|YP_003479208.1| - 2 8.5 7.3 0.11 12.6 1.4 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5595) SnoaL_3 PF13474.6 gi|289580743|ref|YP_003479209.1| - 1.2e-08 35.2 0.1 1.8e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.8 gi|289580743|ref|YP_003479209.1| - 1e-05 25.2 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) NTF2 PF02136.20 gi|289580743|ref|YP_003479209.1| - 0.11 13.1 0.0 0.16 12.6 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DUF3040 PF11239.8 gi|289580744|ref|YP_003479210.1| - 0.00037 20.7 1.5 0.00045 20.4 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) DUF417 PF04224.12 gi|289580744|ref|YP_003479210.1| - 0.13 11.8 1.5 0.16 11.5 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Zincin_2 PF10103.9 gi|289580745|ref|YP_003479211.1| - 8.8e-64 215.8 4.8 7.1e-34 117.6 1.0 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase HTH_29 PF13551.6 gi|289580745|ref|YP_003479211.1| - 0.089 12.8 0.2 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix LSM PF01423.22 gi|289580746|ref|YP_003479212.1| - 3.1e-14 52.4 0.0 1.2e-13 50.6 0.0 2.0 2 1 0 2 2 2 1 LSM domain SM-ATX PF14438.6 gi|289580746|ref|YP_003479212.1| - 7.4e-08 32.4 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|289580747|ref|YP_003479213.1| - 2e-22 79.1 13.9 2.2e-22 78.9 13.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-piccolo PF05715.13 gi|289580747|ref|YP_003479213.1| - 0.0035 17.4 4.2 0.012 15.7 4.2 1.8 1 1 0 1 1 1 1 Piccolo Zn-finger DZR PF12773.7 gi|289580747|ref|YP_003479213.1| - 0.0097 15.9 3.4 0.013 15.5 3.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|289580747|ref|YP_003479213.1| - 0.034 13.5 3.3 0.45 9.9 0.2 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.19 gi|289580747|ref|YP_003479213.1| - 0.13 12.3 2.6 0.14 12.2 2.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|289580747|ref|YP_003479213.1| - 0.14 11.9 7.1 0.52 10.1 0.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289580747|ref|YP_003479213.1| - 0.16 11.4 4.0 5.7 6.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|289580747|ref|YP_003479213.1| - 0.83 9.6 7.8 1.1 9.2 7.7 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|289580747|ref|YP_003479213.1| - 3 7.8 6.1 6.2 6.8 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2688 PF10892.8 gi|289580747|ref|YP_003479213.1| - 5.9 6.4 8.3 10 5.7 7.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) PALP PF00291.25 gi|289580748|ref|YP_003479214.1| - 2.3e-63 214.4 3.1 2.7e-63 214.1 3.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|289580748|ref|YP_003479214.1| - 0.038 14.0 0.3 0.078 13.0 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Trypan_PARP PF05887.11 gi|289580748|ref|YP_003479214.1| - 0.09 12.8 10.8 0.23 11.5 10.8 1.7 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NESP55 PF06390.12 gi|289580748|ref|YP_003479214.1| - 0.86 9.1 8.6 1.4 8.5 8.6 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Methyltransf_25 PF13649.6 gi|289580749|ref|YP_003479215.1| - 3.3e-17 63.0 0.1 1.1e-16 61.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289580749|ref|YP_003479215.1| - 3.4e-12 46.8 0.0 7.1e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580749|ref|YP_003479215.1| - 3.1e-11 43.9 0.0 6.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580749|ref|YP_003479215.1| - 7.2e-11 42.2 0.0 1e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289580749|ref|YP_003479215.1| - 1.7e-10 40.9 0.0 2.5e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|289580749|ref|YP_003479215.1| - 1.5e-05 24.5 0.0 2.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|289580749|ref|YP_003479215.1| - 3.5e-05 23.4 0.0 5.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|289580749|ref|YP_003479215.1| - 0.00024 20.5 0.0 0.00032 20.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|289580749|ref|YP_003479215.1| - 0.00066 19.3 0.0 0.0015 18.2 0.0 1.5 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_17 PF12692.7 gi|289580749|ref|YP_003479215.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase MetW PF07021.12 gi|289580749|ref|YP_003479215.1| - 0.013 15.2 0.2 0.06 12.9 0.0 1.9 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.17 gi|289580749|ref|YP_003479215.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase UPF0146 PF03686.13 gi|289580749|ref|YP_003479215.1| - 0.16 11.8 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) PcrB PF01884.17 gi|289580750|ref|YP_003479216.1| - 1.8e-51 174.8 0.7 2.1e-51 174.6 0.7 1.0 1 0 0 1 1 1 1 PcrB family SIR2 PF02146.17 gi|289580751|ref|YP_003479217.1| - 6.3e-38 130.5 0.0 1.7e-19 70.5 0.0 2.1 2 0 0 2 2 2 2 Sir2 family tRNA-synt_2 PF00152.20 gi|289580752|ref|YP_003479218.1| - 3.4e-85 285.9 0.0 4e-85 285.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|289580752|ref|YP_003479218.1| - 1.8e-14 53.5 0.2 3.8e-14 52.4 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|289580752|ref|YP_003479218.1| - 0.00075 19.0 0.1 0.19 11.2 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|289580752|ref|YP_003479218.1| - 0.076 13.2 0.0 0.44 10.7 0.0 1.9 2 0 0 2 2 2 0 Mediator complex subunit 30 GHMP_kinases_N PF00288.26 gi|289580753|ref|YP_003479219.1| - 6.7e-11 42.3 3.5 1.4e-10 41.2 3.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF1508 PF07411.12 gi|289580754|ref|YP_003479220.1| - 6.9e-72 237.1 6.2 7.5e-09 35.3 0.0 13.2 13 0 0 13 13 13 11 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.6 gi|289580754|ref|YP_003479220.1| - 1.1e-05 25.6 0.3 2.7 8.2 0.0 5.8 4 1 2 6 6 6 1 DDE domain FtsQ PF03799.15 gi|289580754|ref|YP_003479220.1| - 0.0011 19.8 1.9 4.6 8.1 0.1 5.1 4 1 1 6 6 6 1 Cell division protein FtsQ Nucleoporin2 PF04096.14 gi|289580754|ref|YP_003479220.1| - 0.0018 18.4 0.3 56 3.8 0.0 4.5 5 0 0 5 5 5 0 Nucleoporin autopeptidase DUF2914 PF11141.8 gi|289580754|ref|YP_003479220.1| - 0.02 14.6 7.5 0.35 10.7 0.0 5.2 5 0 0 5 5 5 0 Protein of unknown function (DUF2914) TolB_like PF15869.5 gi|289580754|ref|YP_003479220.1| - 0.22 10.7 0.0 0.86 8.8 0.0 1.9 2 0 0 2 2 2 0 TolB-like 6-blade propeller-like DUF2157 PF09925.9 gi|289580754|ref|YP_003479220.1| - 0.44 10.3 6.6 1.8 8.4 0.4 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) SPOR PF05036.13 gi|289580754|ref|YP_003479220.1| - 1.2 9.6 6.2 29 5.1 0.0 5.1 7 0 0 7 7 7 0 Sporulation related domain SpaA PF17802.1 gi|289580754|ref|YP_003479220.1| - 6.7 7.1 6.2 18 5.8 0.0 3.8 5 0 0 5 5 5 0 Prealbumin-like fold domain Imm72 PF15584.6 gi|289580754|ref|YP_003479220.1| - 7.1 6.8 7.0 15 5.8 0.2 4.2 4 0 0 4 4 4 0 Immunity protein 72 PPS_PS PF02006.16 gi|289580755|ref|YP_003479221.1| - 4.8e-75 251.0 2.3 6.1e-75 250.6 2.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase RTT107_BRCT_6 PF16771.5 gi|289580755|ref|YP_003479221.1| - 0.063 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain DUF202 PF02656.15 gi|289580756|ref|YP_003479222.1| - 0.13 12.7 0.4 0.15 12.5 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) YhfC PF10086.9 gi|289580757|ref|YP_003479223.1| - 0.037 13.4 0.4 0.039 13.3 0.4 1.2 1 0 0 1 1 1 0 YhfC intramembrane metalloprotease Regulator_TrmB PF11495.8 gi|289580759|ref|YP_003479225.1| - 0.0034 16.6 0.0 0.019 14.2 0.0 1.9 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB CSN8_PSD8_EIF3K PF10075.9 gi|289580759|ref|YP_003479225.1| - 0.0046 16.9 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 CSN8/PSMD8/EIF3K family HTH_20 PF12840.7 gi|289580759|ref|YP_003479225.1| - 0.0059 16.6 5.3 0.79 9.8 0.2 3.8 3 1 0 3 3 3 2 Helix-turn-helix domain tRNA-synt_1b PF00579.25 gi|289580760|ref|YP_003479226.1| - 8.4e-48 163.2 0.0 1e-47 162.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|289580760|ref|YP_003479226.1| - 0.013 14.5 0.0 4.2 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF2156 PF09924.9 gi|289580760|ref|YP_003479226.1| - 0.1 11.6 0.2 0.19 10.7 0.2 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) BPL_LplA_LipB PF03099.19 gi|289580761|ref|YP_003479227.1| - 1e-16 61.1 0.0 1.6e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|289580761|ref|YP_003479227.1| - 1.5e-12 47.2 0.0 2.7e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|289580761|ref|YP_003479227.1| - 2.6e-10 40.0 0.2 5.3e-10 39.0 0.2 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|289580761|ref|YP_003479227.1| - 2.9e-08 33.7 0.0 7.2e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289580761|ref|YP_003479227.1| - 4.7e-06 26.1 0.0 9.1e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289580761|ref|YP_003479227.1| - 4e-05 23.4 0.0 6.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|289580761|ref|YP_003479227.1| - 0.0072 16.2 0.0 0.02 14.8 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|289580761|ref|YP_003479227.1| - 0.025 14.4 2.0 0.05 13.4 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Usp PF00582.26 gi|289580762|ref|YP_003479228.1| - 2.3e-37 128.6 0.2 2.8e-37 128.4 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|289580763|ref|YP_003479229.1| - 1.5e-30 106.7 0.1 2.3e-21 76.5 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|289580763|ref|YP_003479229.1| - 8.2e-08 31.9 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|289580763|ref|YP_003479229.1| - 4.1e-05 23.3 5.0 0.00015 21.4 0.1 2.7 1 1 2 3 3 3 2 Amidohydrolase family HD PF01966.22 gi|289580764|ref|YP_003479230.1| - 2.3e-12 47.2 1.8 4.7e-12 46.2 1.8 1.5 1 0 0 1 1 1 1 HD domain DUF3388 PF11868.8 gi|289580764|ref|YP_003479230.1| - 0.1 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) SATase_N PF06426.14 gi|289580764|ref|YP_003479230.1| - 0.42 11.0 2.4 18 5.7 0.2 2.6 2 0 0 2 2 2 0 Serine acetyltransferase, N-terminal Rad50_zn_hook PF04423.14 gi|289580765|ref|YP_003479231.1| - 0.036 13.9 0.4 0.15 11.9 0.2 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif PhnA_Zn_Ribbon PF08274.12 gi|289580765|ref|YP_003479231.1| - 0.049 13.6 0.0 0.18 11.8 0.0 1.8 2 0 0 2 2 2 0 PhnA Zinc-Ribbon AsnC_trans_reg PF01037.21 gi|289580767|ref|YP_003479233.1| - 1.9e-13 50.1 0.6 2.2e-13 50.0 0.6 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HHH_2 PF12826.7 gi|289580767|ref|YP_003479233.1| - 0.048 13.8 0.8 1.1 9.5 0.3 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif GFO_IDH_MocA PF01408.22 gi|289580768|ref|YP_003479234.1| - 8.7e-16 58.8 0.0 1.5e-15 58.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|289580768|ref|YP_003479234.1| - 5.3e-12 45.8 0.3 2.9e-11 43.4 0.3 2.1 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Meth_synt_2 PF01717.18 gi|289580769|ref|YP_003479235.1| - 1e-56 192.6 0.0 1.4e-56 192.2 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|289580769|ref|YP_003479235.1| - 3e-14 53.3 0.0 4.6e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|289580769|ref|YP_003479235.1| - 1.4e-05 24.4 0.0 2.1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.12 gi|289580770|ref|YP_003479236.1| - 5.1e-12 45.9 0.0 4.4e-11 42.8 0.0 1.9 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|289580770|ref|YP_003479236.1| - 1.5e-11 44.2 0.1 2.2e-11 43.6 0.1 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PQQ_2 PF13360.6 gi|289580771|ref|YP_003479237.1| - 3.7e-32 111.8 13.4 2.6e-12 46.8 0.2 3.8 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.6 gi|289580771|ref|YP_003479237.1| - 1.2e-27 95.6 21.7 0.00066 20.1 0.1 8.5 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|289580771|ref|YP_003479237.1| - 7.7e-16 57.2 5.7 0.016 15.1 0.0 6.7 6 0 0 6 6 6 5 PQQ enzyme repeat Methyltransf_11 PF08241.12 gi|289580772|ref|YP_003479238.1| - 3.2e-11 43.7 0.1 3.6e-10 40.3 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289580772|ref|YP_003479238.1| - 3.8e-10 40.3 0.0 2.6e-09 37.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|289580772|ref|YP_003479238.1| - 5.6e-09 35.8 0.0 7.5e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|289580772|ref|YP_003479238.1| - 7.2e-07 29.1 0.0 1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580772|ref|YP_003479238.1| - 8.8e-06 25.6 0.0 0.00022 21.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580772|ref|YP_003479238.1| - 7.1e-05 23.5 0.0 0.0025 18.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|289580772|ref|YP_003479238.1| - 0.00062 19.8 0.0 0.00083 19.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|289580772|ref|YP_003479238.1| - 0.0048 16.3 0.1 0.0062 16.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|289580772|ref|YP_003479238.1| - 0.045 13.0 0.0 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|289580772|ref|YP_003479238.1| - 0.055 12.8 0.0 0.19 11.0 0.0 1.7 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|289580772|ref|YP_003479238.1| - 0.067 12.9 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|289580772|ref|YP_003479238.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 gi|289580772|ref|YP_003479238.1| - 0.22 11.0 0.0 0.43 10.0 0.0 1.5 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain MS_channel PF00924.18 gi|289580773|ref|YP_003479239.1| - 2e-49 167.9 0.5 4e-49 167.0 0.5 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel RrnaAD PF00398.20 gi|289580774|ref|YP_003479240.1| - 2.2e-51 174.4 0.0 2.8e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|289580774|ref|YP_003479240.1| - 0.00013 22.6 0.0 0.00024 21.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289580774|ref|YP_003479240.1| - 0.0032 18.2 0.0 0.006 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289580774|ref|YP_003479240.1| - 0.0055 16.5 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_28 PF02636.17 gi|289580774|ref|YP_003479240.1| - 0.094 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.6 gi|289580774|ref|YP_003479240.1| - 0.13 12.1 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Response_reg PF00072.24 gi|289580775|ref|YP_003479241.1| - 1.3e-14 54.3 0.0 1.7e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF655 PF04919.12 gi|289580776|ref|YP_003479242.1| - 5.6e-64 215.4 0.1 6.5e-64 215.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|289580776|ref|YP_003479242.1| - 0.0007 19.8 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|289580776|ref|YP_003479242.1| - 0.0046 17.2 0.0 0.0087 16.3 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|289580776|ref|YP_003479242.1| - 0.18 12.4 1.9 1.4 9.6 0.6 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|289580777|ref|YP_003479243.1| - 2.1e-09 37.7 0.2 2.8e-09 37.4 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 CRR7 PF12095.8 gi|289580777|ref|YP_003479243.1| - 0.077 13.5 1.7 1.8 9.1 0.2 2.2 1 1 1 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 Ribosomal_L21e PF01157.18 gi|289580778|ref|YP_003479244.1| - 1.3e-32 111.6 0.2 1.5e-32 111.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.19 gi|289580778|ref|YP_003479244.1| - 0.62 9.9 2.3 0.4 10.6 0.7 1.5 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Cys_Met_Meta_PP PF01053.20 gi|289580779|ref|YP_003479245.1| - 4.5e-153 509.3 0.0 5e-153 509.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 gi|289580779|ref|YP_003479245.1| - 6.4e-05 21.6 0.0 9.5e-05 21.1 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_5 PF00266.19 gi|289580779|ref|YP_003479245.1| - 0.0016 17.4 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|289580779|ref|YP_003479245.1| - 0.018 14.4 0.2 0.074 12.3 0.1 2.0 1 1 1 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family BRK PF07533.16 gi|289580779|ref|YP_003479245.1| - 0.097 12.3 0.0 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 BRK domain Lactamase_B PF00753.27 gi|289580781|ref|YP_003479247.1| - 2.1e-23 83.4 9.1 2.8e-23 83.0 9.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289580781|ref|YP_003479247.1| - 0.0025 17.3 0.3 0.0039 16.7 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|289580781|ref|YP_003479247.1| - 0.047 13.1 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lig_C PF18330.1 gi|289580782|ref|YP_003479248.1| - 7.3e-38 129.4 0.0 1.2e-37 128.7 0.0 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|289580782|ref|YP_003479248.1| - 2.7e-13 50.6 0.0 5.3e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 RNA ligase NESP55 PF06390.12 gi|289580782|ref|YP_003479248.1| - 0.37 10.4 14.4 0.59 9.7 14.4 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Trypan_PARP PF05887.11 gi|289580782|ref|YP_003479248.1| - 1.3 9.0 7.6 2.2 8.2 7.6 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PIN_5 PF08745.11 gi|289580784|ref|YP_003479250.1| - 1.2e-76 256.8 0.1 1.3e-76 256.6 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease DUF4175 PF13779.6 gi|289580784|ref|YP_003479250.1| - 0.089 10.7 0.0 0.12 10.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) AAA_21 PF13304.6 gi|289580784|ref|YP_003479250.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system EF1_GNE PF00736.19 gi|289580785|ref|YP_003479251.1| - 4e-18 65.4 0.0 4.4e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|289580786|ref|YP_003479252.1| - 2.4e-07 30.6 5.7 2.4e-07 30.6 5.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) C1_2 PF03107.16 gi|289580786|ref|YP_003479252.1| - 0.0013 19.1 12.7 0.085 13.2 0.9 2.2 1 1 1 2 2 2 2 C1 domain Rhodanese_C PF12368.8 gi|289580786|ref|YP_003479252.1| - 0.0085 16.4 10.7 0.0095 16.3 10.7 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal zf-ACC PF17848.1 gi|289580786|ref|YP_003479252.1| - 0.024 14.7 0.7 0.024 14.7 0.7 3.7 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DNA_RNApol_7kD PF03604.13 gi|289580786|ref|YP_003479252.1| - 0.027 14.1 14.1 0.25 11.0 1.8 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_6 PF13912.6 gi|289580786|ref|YP_003479252.1| - 0.032 14.3 9.5 0.62 10.1 0.1 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger HscB_4_cys PF18256.1 gi|289580786|ref|YP_003479252.1| - 0.038 13.8 1.1 0.038 13.8 1.1 2.8 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif C1_1 PF00130.22 gi|289580786|ref|YP_003479252.1| - 0.044 13.7 1.0 0.044 13.7 1.0 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rubredoxin_2 PF18073.1 gi|289580786|ref|YP_003479252.1| - 0.049 13.4 19.3 0.086 12.6 0.6 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-Mss51 PF13824.6 gi|289580786|ref|YP_003479252.1| - 0.051 13.7 11.3 5.2 7.2 6.0 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NMDAR2_C PF10565.9 gi|289580786|ref|YP_003479252.1| - 0.06 12.2 7.7 0.063 12.1 7.7 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-ribbon_3 PF13248.6 gi|289580786|ref|YP_003479252.1| - 0.073 12.5 15.9 2.7 7.5 0.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-CHY PF05495.12 gi|289580786|ref|YP_003479252.1| - 0.087 13.3 13.7 0.24 11.9 8.4 2.1 1 1 1 2 2 2 0 CHY zinc finger zf-MYND PF01753.18 gi|289580786|ref|YP_003479252.1| - 0.14 12.3 10.8 1.1 9.4 0.4 2.2 2 1 0 2 2 2 0 MYND finger ZZ PF00569.17 gi|289580786|ref|YP_003479252.1| - 0.15 11.9 11.4 1.1 9.2 0.2 2.9 3 0 0 3 3 3 0 Zinc finger, ZZ type zinc_ribbon_2 PF13240.6 gi|289580786|ref|YP_003479252.1| - 0.17 11.6 0.8 0.17 11.6 0.8 3.9 3 1 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|289580786|ref|YP_003479252.1| - 0.18 11.4 0.5 0.18 11.4 0.5 3.9 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|289580786|ref|YP_003479252.1| - 0.18 11.8 19.1 0.88 9.6 14.6 3.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|289580786|ref|YP_003479252.1| - 0.19 11.7 12.1 0.4 10.7 12.1 1.5 1 1 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|289580786|ref|YP_003479252.1| - 0.24 11.3 12.5 0.16 11.9 7.9 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2387 PF09526.10 gi|289580786|ref|YP_003479252.1| - 0.3 11.3 10.5 2 8.7 0.2 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) HypA PF01155.19 gi|289580786|ref|YP_003479252.1| - 0.35 10.9 13.1 0.08 13.0 1.3 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PolC_DP2 PF03833.13 gi|289580786|ref|YP_003479252.1| - 0.41 8.5 9.1 0.45 8.3 9.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NMD3 PF04981.13 gi|289580786|ref|YP_003479252.1| - 0.52 9.7 10.6 0.61 9.5 10.6 1.0 1 0 0 1 1 1 0 NMD3 family UPF0547 PF10571.9 gi|289580786|ref|YP_003479252.1| - 0.57 10.3 0.4 0.57 10.3 0.4 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-UBP PF02148.19 gi|289580786|ref|YP_003479252.1| - 0.59 10.5 9.4 0.21 11.9 2.6 2.5 2 1 1 3 3 3 0 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.10 gi|289580786|ref|YP_003479252.1| - 0.67 10.1 20.9 19 5.5 1.2 4.0 1 1 3 4 4 4 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|289580786|ref|YP_003479252.1| - 0.9 9.4 11.1 6.2 6.7 0.1 3.9 4 0 0 4 4 4 0 zinc-finger C2H2-type zf-UBR PF02207.20 gi|289580786|ref|YP_003479252.1| - 0.91 9.7 13.4 6.2 7.1 10.4 2.4 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Zn_Tnp_IS91 PF14319.6 gi|289580786|ref|YP_003479252.1| - 1.1 9.3 11.7 2.7 8.1 11.7 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-AN1 PF01428.16 gi|289580786|ref|YP_003479252.1| - 2 8.7 12.8 4.2 7.6 1.9 2.6 1 1 0 2 2 2 0 AN1-like Zinc finger Sgf11 PF08209.11 gi|289580786|ref|YP_003479252.1| - 2.8 7.6 18.6 0.21 11.2 1.2 3.9 1 1 3 4 4 4 0 Sgf11 (transcriptional regulation protein) Ribosomal_L37ae PF01780.19 gi|289580786|ref|YP_003479252.1| - 5.1 7.3 10.7 2.8 8.1 6.3 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-C2H2 PF00096.26 gi|289580786|ref|YP_003479252.1| - 6.3 7.5 16.6 3.2 8.4 0.4 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type YhfH PF14149.6 gi|289580786|ref|YP_003479252.1| - 6.9 6.7 18.7 32 4.6 0.1 3.3 1 1 2 3 3 3 0 YhfH-like protein A2L_zn_ribbon PF08792.10 gi|289580786|ref|YP_003479252.1| - 9.4 6.1 16.8 11 5.9 5.4 3.8 1 1 2 3 3 3 0 A2L zinc ribbon domain Metallophos_2 PF12850.7 gi|289580787|ref|YP_003479253.1| - 3.7e-11 43.5 0.0 4.2e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289580787|ref|YP_003479253.1| - 1.9e-10 41.6 0.0 2.2e-08 34.9 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Nre_N PF04894.12 gi|289580788|ref|YP_003479254.1| - 5.1e-94 315.1 0.0 6.2e-94 314.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|289580788|ref|YP_003479254.1| - 3.8e-40 136.2 0.1 7e-40 135.4 0.1 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF2273 PF10031.9 gi|289580790|ref|YP_003479256.1| - 1.3 9.1 10.3 1.9 8.5 10.3 1.1 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) AI-2E_transport PF01594.16 gi|289580791|ref|YP_003479257.1| - 9.7e-43 146.5 34.0 1.2e-42 146.3 34.0 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF302 PF03625.14 gi|289580792|ref|YP_003479258.1| - 2.9e-17 62.3 0.0 4.6e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 CPBP PF02517.16 gi|289580793|ref|YP_003479259.1| - 3.8e-06 27.2 1.9 1.5e-05 25.3 1.9 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease TPP_enzyme_N PF02776.18 gi|289580795|ref|YP_003479261.1| - 3.5e-49 166.7 1.6 2.7e-45 154.0 0.1 3.1 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289580795|ref|YP_003479261.1| - 3.6e-26 91.8 0.0 1.7e-25 89.6 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|289580795|ref|YP_003479261.1| - 5.4e-20 71.5 0.1 1e-19 70.6 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Isochorismatase PF00857.20 gi|289580795|ref|YP_003479261.1| - 0.027 14.6 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 Isochorismatase family Transket_pyr PF02779.24 gi|289580795|ref|YP_003479261.1| - 0.27 10.9 1.4 26 4.4 0.1 3.0 3 1 0 3 3 3 0 Transketolase, pyrimidine binding domain Sporozoite_P67 PF05642.11 gi|289580796|ref|YP_003479262.1| - 7.2e-07 27.7 5.1 9.3e-07 27.3 5.1 1.1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen Peptidase_S64 PF08192.11 gi|289580796|ref|YP_003479262.1| - 0.04 12.4 3.0 0.049 12.1 3.0 1.0 1 0 0 1 1 1 0 Peptidase family S64 Virul_fac_BrkB PF03631.15 gi|289580796|ref|YP_003479262.1| - 0.29 10.7 15.4 0.87 9.2 15.5 1.7 1 1 0 1 1 1 0 Virulence factor BrkB HRG PF16954.5 gi|289580796|ref|YP_003479262.1| - 0.64 10.5 0.1 0.64 10.5 0.1 2.7 3 1 1 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene YdjM PF04307.14 gi|289580797|ref|YP_003479263.1| - 4.9e-11 42.3 4.8 4.5e-10 39.1 4.8 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase CinA PF02464.17 gi|289580798|ref|YP_003479264.1| - 1.3e-56 190.5 0.1 1.5e-56 190.3 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.11 gi|289580798|ref|YP_003479264.1| - 0.072 12.9 0.2 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) Aminotran_1_2 PF00155.21 gi|289580799|ref|YP_003479265.1| - 4.2e-57 194.0 0.0 5e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|289580799|ref|YP_003479265.1| - 2.1e-07 30.2 0.0 3.4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.19 gi|289580799|ref|YP_003479265.1| - 4e-07 29.3 0.0 7.6e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|289580799|ref|YP_003479265.1| - 9.8e-07 28.3 0.0 1.7e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_MocR PF12897.7 gi|289580799|ref|YP_003479265.1| - 2.8e-05 23.1 0.2 0.018 13.8 0.1 2.4 2 1 0 2 2 2 2 Alanine-glyoxylate amino-transferase Cys_Met_Meta_PP PF01053.20 gi|289580799|ref|YP_003479265.1| - 3.6e-05 22.5 0.0 4.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|289580799|ref|YP_003479265.1| - 3.7e-05 22.6 0.0 8.1e-05 21.5 0.0 1.5 1 1 1 2 2 2 1 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.17 gi|289580799|ref|YP_003479265.1| - 0.0021 17.4 0.0 0.0036 16.7 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4127 PF13552.6 gi|289580799|ref|YP_003479265.1| - 0.091 11.4 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) HRDC PF00570.23 gi|289580799|ref|YP_003479265.1| - 0.15 12.0 0.1 37 4.4 0.0 3.2 3 0 0 3 3 3 0 HRDC domain Usp PF00582.26 gi|289580800|ref|YP_003479266.1| - 3.3e-29 102.2 0.5 3.9e-29 102.0 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family ArsA_ATPase PF02374.15 gi|289580801|ref|YP_003479267.1| - 6.1e-78 262.1 0.0 7.5e-52 176.4 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|289580801|ref|YP_003479267.1| - 1.5e-07 31.5 0.0 3.1e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|289580801|ref|YP_003479267.1| - 8.6e-05 22.5 0.0 0.00023 21.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|289580801|ref|YP_003479267.1| - 0.0072 15.8 1.6 0.032 13.7 0.4 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|289580801|ref|YP_003479267.1| - 0.015 14.8 0.7 0.12 12.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain CBP_BcsQ PF06564.12 gi|289580801|ref|YP_003479267.1| - 0.031 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|289580801|ref|YP_003479267.1| - 0.11 12.1 0.1 0.63 9.6 0.2 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|289580801|ref|YP_003479267.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.18 gi|289580801|ref|YP_003479267.1| - 0.18 11.2 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Usp PF00582.26 gi|289580802|ref|YP_003479268.1| - 9.1e-18 65.1 0.7 1.3e-17 64.7 0.7 1.2 1 0 0 1 1 1 1 Universal stress protein family Na_sulph_symp PF00939.19 gi|289580803|ref|YP_003479269.1| - 2.7e-86 290.5 28.6 4.6e-86 289.7 28.6 1.3 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|289580803|ref|YP_003479269.1| - 4.9e-40 137.6 44.2 4.9e-40 137.6 44.2 2.2 1 1 1 2 2 2 1 Citrate transporter MarR_2 PF12802.7 gi|289580804|ref|YP_003479270.1| - 5.6e-05 23.0 0.3 9.6e-05 22.2 0.2 1.4 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|289580804|ref|YP_003479270.1| - 0.0001 22.3 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|289580804|ref|YP_003479270.1| - 0.00035 20.9 0.0 0.00048 20.4 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|289580804|ref|YP_003479270.1| - 0.0005 19.6 0.1 0.28 10.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289580804|ref|YP_003479270.1| - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|289580804|ref|YP_003479270.1| - 0.0088 15.8 2.6 0.023 14.5 2.6 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|289580804|ref|YP_003479270.1| - 0.025 14.4 0.7 0.15 11.9 0.7 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|289580804|ref|YP_003479270.1| - 0.042 13.6 0.0 0.069 12.9 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain Penicillinase_R PF03965.16 gi|289580804|ref|YP_003479270.1| - 0.061 13.7 0.0 0.063 13.6 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor Mrr_N PF14338.6 gi|289580804|ref|YP_003479270.1| - 0.15 12.2 0.2 1.7 8.9 0.0 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain adh_short PF00106.25 gi|289580806|ref|YP_003479272.1| - 1e-51 175.2 0.0 1.3e-51 174.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289580806|ref|YP_003479272.1| - 8.2e-45 153.2 0.0 1.2e-44 152.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|289580806|ref|YP_003479272.1| - 1e-13 51.6 0.0 1.6e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|289580806|ref|YP_003479272.1| - 2.2e-10 40.7 0.5 5.4e-10 39.4 0.5 1.8 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289580806|ref|YP_003479272.1| - 5.6e-07 29.3 0.1 1.9e-06 27.6 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|289580806|ref|YP_003479272.1| - 1.8e-05 24.0 0.2 2.9e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.10 gi|289580806|ref|YP_003479272.1| - 5.6e-05 22.7 0.0 0.00017 21.1 0.0 1.8 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) NmrA PF05368.13 gi|289580806|ref|YP_003479272.1| - 0.00046 19.8 0.0 0.001 18.6 0.1 1.5 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|289580806|ref|YP_003479272.1| - 0.015 15.6 0.1 0.026 14.8 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF5114 PF17141.4 gi|289580806|ref|YP_003479272.1| - 0.069 13.7 1.2 0.36 11.4 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF5114) RelB_transactiv PF16181.5 gi|289580806|ref|YP_003479272.1| - 0.083 13.2 0.3 0.15 12.3 0.3 1.4 1 0 0 1 1 1 0 RelB transactivation domain Eno-Rase_NADH_b PF12242.8 gi|289580806|ref|YP_003479272.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NESP55 PF06390.12 gi|289580806|ref|YP_003479272.1| - 0.25 10.9 7.5 0.03 13.9 3.3 1.7 2 0 0 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) Endonuclease_5 PF04493.14 gi|289580807|ref|YP_003479273.1| - 2.1e-53 181.0 0.0 2.6e-53 180.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|289580807|ref|YP_003479273.1| - 0.00098 18.6 0.1 0.21 11.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF99 Rhomboid PF01694.22 gi|289580808|ref|YP_003479274.1| - 5e-29 101.2 16.9 5e-29 101.2 16.9 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|289580808|ref|YP_003479274.1| - 3.1e-12 46.4 8.9 4.5e-12 45.9 8.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|289580808|ref|YP_003479274.1| - 1.4e-05 25.6 1.6 1.4e-05 25.6 1.6 2.1 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|289580808|ref|YP_003479274.1| - 0.59 10.1 6.2 0.85 9.5 6.2 1.2 1 0 0 1 1 1 0 HIT zinc finger HisKA PF00512.25 gi|289580809|ref|YP_003479275.1| - 1.4e-05 25.1 0.1 3.5e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|289580810|ref|YP_003479276.1| - 5.6e-27 94.1 0.0 6.2e-27 94.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PepSY_2 PF13670.6 gi|289580810|ref|YP_003479276.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain HEAT_2 PF13646.6 gi|289580811|ref|YP_003479277.1| - 6.5e-15 55.3 5.6 3.3e-06 27.4 0.0 4.0 4 1 1 5 5 5 3 HEAT repeats HEAT PF02985.22 gi|289580811|ref|YP_003479277.1| - 5.3e-08 32.5 2.9 0.096 13.0 0.0 5.0 5 0 0 5 5 5 2 HEAT repeat HEAT_EZ PF13513.6 gi|289580811|ref|YP_003479277.1| - 4e-07 30.4 3.6 0.0033 17.9 0.0 4.2 5 0 0 5 5 5 3 HEAT-like repeat Cohesin_HEAT PF12765.7 gi|289580811|ref|YP_003479277.1| - 0.0003 21.0 0.4 0.0022 18.3 0.0 2.3 2 0 0 2 2 2 1 HEAT repeat associated with sister chromatid cohesion ALF PF03752.13 gi|289580811|ref|YP_003479277.1| - 0.68 9.9 5.4 10 6.2 0.8 3.8 4 0 0 4 4 4 0 Short repeats of unknown function Glyco_tranf_2_3 PF13641.6 gi|289580812|ref|YP_003479278.1| - 1.4e-23 84.0 0.1 1.3e-22 80.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|289580812|ref|YP_003479278.1| - 7.1e-21 74.8 0.6 4.3e-20 72.2 0.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|289580812|ref|YP_003479278.1| - 6.3e-18 65.4 0.2 6.3e-18 65.4 0.2 2.1 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|289580812|ref|YP_003479278.1| - 4.2e-07 29.6 0.0 2e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|289580812|ref|YP_003479278.1| - 2.1e-06 26.6 0.0 0.0034 16.1 0.1 3.1 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_2 PF10111.9 gi|289580812|ref|YP_003479278.1| - 0.0072 15.8 0.3 0.14 11.6 0.2 2.3 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|289580812|ref|YP_003479278.1| - 0.069 13.7 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 DNA_pol_B_thumb PF14791.6 gi|289580814|ref|YP_003479280.1| - 4.8e-23 81.1 0.0 2.1e-22 79.1 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|289580814|ref|YP_003479280.1| - 1.2e-19 70.4 5.5 1.3e-15 57.4 0.2 3.9 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|289580814|ref|YP_003479280.1| - 2.8e-19 69.5 4.2 2.3e-13 50.5 0.2 3.3 3 1 1 4 4 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|289580814|ref|YP_003479280.1| - 2.5e-08 34.4 0.0 4.1e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|289580814|ref|YP_003479280.1| - 9.1e-08 32.1 3.1 0.0037 17.3 0.0 3.6 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|289580814|ref|YP_003479280.1| - 7.8e-07 29.3 0.1 0.056 13.7 0.0 3.8 2 1 1 3 3 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|289580814|ref|YP_003479280.1| - 1.9e-06 27.6 0.0 1.2e-05 25.1 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|289580814|ref|YP_003479280.1| - 2e-05 24.2 1.0 0.0013 18.5 0.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|289580814|ref|YP_003479280.1| - 3.5e-05 24.0 0.0 0.0001 22.5 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm IMS_HHH PF11798.8 gi|289580814|ref|YP_003479280.1| - 0.0041 17.4 0.6 4.1 7.9 0.1 3.2 3 0 0 3 3 3 1 IMS family HHH motif Cdd1 PF11731.8 gi|289580814|ref|YP_003479280.1| - 0.012 15.9 0.0 0.099 12.9 0.0 2.3 1 1 1 2 2 2 0 Pathogenicity locus 5_3_exonuc PF01367.20 gi|289580814|ref|YP_003479280.1| - 0.054 14.1 0.2 0.26 11.9 0.1 2.2 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Ribosomal_S13 PF00416.22 gi|289580814|ref|YP_003479280.1| - 0.22 11.9 1.7 2.6 8.4 0.1 2.8 2 1 1 3 3 3 0 Ribosomal protein S13/S18 Mut7-C PF01927.16 gi|289580815|ref|YP_003479281.1| - 3e-36 124.7 0.5 6.8e-36 123.6 0.5 1.5 1 1 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|289580815|ref|YP_003479281.1| - 0.0001 22.0 0.1 0.00018 21.2 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) DUF4379 PF14311.6 gi|289580815|ref|YP_003479281.1| - 0.037 14.4 1.3 0.072 13.5 1.3 1.4 1 0 0 1 1 1 0 Probable Zinc-ribbon domain HalOD2 PF18547.1 gi|289580815|ref|YP_003479281.1| - 0.038 13.9 0.6 2.4 8.2 0.2 2.4 2 0 0 2 2 2 0 Halobacterial output domain 2 PIN_10 PF18478.1 gi|289580815|ref|YP_003479281.1| - 0.12 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 PIN like domain DUF4006 PF13179.6 gi|289580816|ref|YP_003479282.1| - 0.54 10.2 4.1 0.67 9.9 4.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) PHP_C PF13263.6 gi|289580817|ref|YP_003479283.1| - 5.6e-15 54.8 0.0 9.6e-15 54.1 0.0 1.4 1 0 0 1 1 1 1 PHP-associated VERL PF11386.8 gi|289580817|ref|YP_003479283.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Vitelline envelope receptor for lysin zf-C2H2 PF00096.26 gi|289580818|ref|YP_003479284.1| - 0.027 14.9 0.0 1.3 9.6 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Spt5-NGN PF03439.13 gi|289580819|ref|YP_003479285.1| - 1.6e-23 82.4 0.0 2.4e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|289580819|ref|YP_003479285.1| - 6.8e-08 32.2 0.8 1.3e-07 31.3 0.3 1.8 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|289580819|ref|YP_003479285.1| - 0.1 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|289580819|ref|YP_003479285.1| - 0.13 12.2 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 DbpA RNA binding domain SecE PF00584.20 gi|289580820|ref|YP_003479286.1| - 3.6e-05 23.6 0.3 4.1e-05 23.4 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Bac_luciferase PF00296.20 gi|289580822|ref|YP_003479288.1| - 1.4e-52 179.1 2.7 1.9e-52 178.7 2.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Trypsin_2 PF13365.6 gi|289580823|ref|YP_003479289.1| - 4.6e-26 92.5 4.1 7.6e-26 91.8 4.1 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|289580823|ref|YP_003479289.1| - 1.9e-11 44.1 0.6 5.2e-11 42.7 0.1 2.0 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.26 gi|289580823|ref|YP_003479289.1| - 8.9e-09 35.5 0.1 2.6e-08 34.0 0.1 1.7 1 1 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|289580823|ref|YP_003479289.1| - 1.2e-06 28.8 0.6 0.02 15.2 0.1 2.5 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|289580823|ref|YP_003479289.1| - 1.3 8.9 9.7 4.2 7.3 0.7 3.1 2 1 1 3 3 3 0 PDZ domain Glyco_hydro_15 PF00723.21 gi|289580824|ref|YP_003479290.1| - 2e-48 165.3 0.0 2.6e-42 145.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF4758 PF15950.5 gi|289580824|ref|YP_003479290.1| - 0.14 12.5 0.3 2.1 8.7 0.1 2.3 2 0 0 2 2 2 0 Putative sperm flagellar membrane protein Zip PF02535.22 gi|289580824|ref|YP_003479290.1| - 0.15 11.2 2.1 0.21 10.8 2.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SelP_N PF04592.14 gi|289580824|ref|YP_003479290.1| - 0.24 10.8 11.1 0.39 10.1 11.1 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region MSA_2 PF00985.17 gi|289580824|ref|YP_003479290.1| - 7.8 6.8 8.1 13 6.1 8.1 1.3 1 0 0 1 1 1 0 Merozoite Surface Antigen 2 (MSA-2) family MR_MLE_C PF13378.6 gi|289580825|ref|YP_003479291.1| - 2e-57 194.3 0.6 2.7e-57 193.9 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|289580825|ref|YP_003479291.1| - 6e-14 52.3 0.0 1.2e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glu_dehyd_C PF16912.5 gi|289580826|ref|YP_003479292.1| - 2.1e-96 321.5 0.0 2.6e-96 321.1 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|289580826|ref|YP_003479292.1| - 2.2e-11 43.6 0.0 4.3e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|289580826|ref|YP_003479292.1| - 3.1e-05 24.0 0.0 5.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|289580826|ref|YP_003479292.1| - 0.00066 19.5 0.0 0.0019 18.1 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase ADH_zinc_N_2 PF13602.6 gi|289580826|ref|YP_003479292.1| - 0.017 16.2 0.0 0.03 15.4 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Aldolase PF01081.19 gi|289580827|ref|YP_003479293.1| - 5.1e-43 146.8 1.9 5.8e-43 146.6 1.9 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase NanE PF04131.14 gi|289580827|ref|YP_003479293.1| - 0.012 14.8 0.3 1.6 7.9 0.1 2.4 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|289580827|ref|YP_003479293.1| - 0.089 12.0 7.1 5.2 6.2 0.4 3.0 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase PALB2_WD40 PF16756.5 gi|289580827|ref|YP_003479293.1| - 0.1 11.5 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Partner and localizer of BRCA2 WD40 domain Regulator_TrmB PF11495.8 gi|289580828|ref|YP_003479294.1| - 1.5e-52 178.1 0.1 2e-52 177.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|289580828|ref|YP_003479294.1| - 5.5e-16 58.2 0.0 1.2e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|289580828|ref|YP_003479294.1| - 0.022 15.1 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator MarR_2 PF12802.7 gi|289580828|ref|YP_003479294.1| - 0.026 14.4 0.2 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|289580828|ref|YP_003479294.1| - 0.031 14.2 0.0 0.084 12.8 0.0 1.8 1 0 0 1 1 1 0 MarR family Cadherin-like PF12733.7 gi|289580828|ref|YP_003479294.1| - 0.043 14.3 0.7 0.21 12.1 0.7 2.1 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain HTH_11 PF08279.12 gi|289580828|ref|YP_003479294.1| - 0.085 12.8 0.4 21 5.1 0.1 2.9 2 1 1 3 3 3 0 HTH domain DUF4230 PF14014.6 gi|289580829|ref|YP_003479295.1| - 0.011 16.0 0.6 0.13 12.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4230) ABC_tran PF00005.27 gi|289580830|ref|YP_003479296.1| - 2.5e-32 112.2 0.0 4.3e-32 111.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|289580830|ref|YP_003479296.1| - 3.2e-10 40.0 0.1 1.5e-09 37.9 0.0 2.2 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|289580830|ref|YP_003479296.1| - 1.4e-09 38.6 0.0 5.8e-09 36.7 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|289580830|ref|YP_003479296.1| - 1.9e-06 27.9 0.0 0.011 15.6 0.0 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289580830|ref|YP_003479296.1| - 3.3e-05 23.4 0.0 5.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|289580830|ref|YP_003479296.1| - 4.2e-05 23.8 0.4 0.00015 22.0 0.0 2.2 3 0 0 3 3 3 1 TOBE domain AAA_22 PF13401.6 gi|289580830|ref|YP_003479296.1| - 0.0011 19.2 0.2 0.0017 18.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|289580830|ref|YP_003479296.1| - 0.0018 18.2 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|289580830|ref|YP_003479296.1| - 0.0019 18.6 0.2 0.0036 17.7 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|289580830|ref|YP_003479296.1| - 0.0029 18.1 0.0 0.0069 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289580830|ref|YP_003479296.1| - 0.0035 17.6 0.0 0.0081 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|289580830|ref|YP_003479296.1| - 0.014 15.8 0.1 0.024 15.1 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|289580830|ref|YP_003479296.1| - 0.029 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|289580830|ref|YP_003479296.1| - 0.041 13.6 0.0 0.091 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|289580830|ref|YP_003479296.1| - 0.093 11.9 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_25 PF13481.6 gi|289580830|ref|YP_003479296.1| - 0.1 12.2 0.1 1.1 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289580830|ref|YP_003479296.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.6 gi|289580831|ref|YP_003479297.1| - 2.7e-36 125.8 0.5 3.6e-36 125.4 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289580831|ref|YP_003479297.1| - 3.7e-19 69.8 3.8 4.9e-19 69.4 3.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|289580832|ref|YP_003479298.1| - 1.5e-16 60.7 20.7 1.5e-16 60.7 20.7 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289580833|ref|YP_003479299.1| - 1.4e-16 60.7 27.3 1.8e-15 57.2 25.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component G2F PF07474.12 gi|289580833|ref|YP_003479299.1| - 0.099 12.4 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 G2F domain Alpha-amylase PF00128.24 gi|289580834|ref|YP_003479300.1| - 1.8e-47 162.6 0.2 7.3e-46 157.3 0.2 2.8 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|289580834|ref|YP_003479300.1| - 2.9e-05 24.3 0.2 0.00011 22.5 0.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|289580834|ref|YP_003479300.1| - 0.013 15.6 0.0 0.04 14.1 0.0 1.8 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain MR_MLE_C PF13378.6 gi|289580835|ref|YP_003479301.1| - 1.1e-55 188.6 1.4 1.5e-55 188.1 1.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|289580835|ref|YP_003479301.1| - 4.8e-14 52.6 0.1 8.7e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain tRNA_SAD PF07973.14 gi|289580836|ref|YP_003479302.1| - 1.5e-11 44.2 0.1 2.9e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|289580836|ref|YP_003479302.1| - 1.6e-09 36.8 0.0 2.3e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|289580836|ref|YP_003479302.1| - 1.4e-06 28.8 3.8 2.8e-06 27.8 3.8 1.5 1 1 0 1 1 1 1 DHHA1 domain HTH_31 PF13560.6 gi|289580837|ref|YP_003479303.1| - 0.00084 19.6 0.4 0.0017 18.7 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|289580837|ref|YP_003479303.1| - 0.0088 16.1 1.2 0.016 15.3 1.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HTH_25 PF13413.6 gi|289580837|ref|YP_003479303.1| - 0.012 15.4 1.6 0.018 14.9 1.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|289580837|ref|YP_003479303.1| - 0.016 15.2 0.3 0.028 14.5 0.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix PhnA_Zn_Ribbon PF08274.12 gi|289580837|ref|YP_003479303.1| - 0.032 14.2 1.6 0.083 12.9 1.6 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_19 PF12844.7 gi|289580837|ref|YP_003479303.1| - 0.071 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF420 PF04238.12 gi|289580838|ref|YP_003479304.1| - 4.7e-37 127.2 6.3 4.7e-37 127.2 6.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|289580838|ref|YP_003479304.1| - 5.3e-05 23.5 13.7 7.6e-05 23.0 2.3 2.4 2 1 0 2 2 2 2 Predicted membrane protein (DUF2306) DUF5389 PF17364.2 gi|289580838|ref|YP_003479304.1| - 0.0073 16.3 1.8 0.012 15.7 0.4 1.9 2 0 0 2 2 2 1 Family of unknown function (DUF5389) Cytochrom_B561 PF03188.16 gi|289580838|ref|YP_003479304.1| - 0.018 15.2 2.4 0.018 15.2 2.4 2.3 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 DUF1240 PF06836.12 gi|289580838|ref|YP_003479304.1| - 0.055 14.0 0.7 0.055 14.0 0.7 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) FixH PF05751.11 gi|289580839|ref|YP_003479305.1| - 0.15 12.1 0.6 0.17 11.9 0.6 1.0 1 0 0 1 1 1 0 FixH AsmA PF05170.14 gi|289580839|ref|YP_003479305.1| - 0.64 8.7 2.3 0.68 8.7 2.3 1.0 1 0 0 1 1 1 0 AsmA family GATase_6 PF13522.6 gi|289580840|ref|YP_003479306.1| - 2.2e-19 70.0 0.0 4.2e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|289580840|ref|YP_003479306.1| - 1.1e-18 67.3 0.0 2.3e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|289580840|ref|YP_003479306.1| - 5.4e-09 35.8 0.1 1.1e-08 34.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|289580840|ref|YP_003479306.1| - 0.00021 20.3 0.0 0.00042 19.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II CARDB PF07705.11 gi|289580841|ref|YP_003479307.1| - 0.00076 19.7 0.1 0.0014 18.9 0.1 1.5 1 0 0 1 1 1 1 CARDB DUF4232 PF14016.6 gi|289580841|ref|YP_003479307.1| - 0.0014 18.8 0.7 0.0045 17.1 0.7 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4232) MutS_V PF00488.21 gi|289580842|ref|YP_003479308.1| - 1.1e-07 32.1 0.0 2e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|289580842|ref|YP_003479308.1| - 0.00018 22.0 1.4 0.94 10.1 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain AAA_21 PF13304.6 gi|289580842|ref|YP_003479308.1| - 0.11 12.3 0.2 0.29 10.9 0.2 1.7 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system PolC_DP2 PF03833.13 gi|289580842|ref|YP_003479308.1| - 0.12 10.2 2.0 0.17 9.7 2.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 AAA_28 PF13521.6 gi|289580842|ref|YP_003479308.1| - 0.18 12.0 0.0 0.18 12.0 0.0 3.1 3 2 0 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|289580842|ref|YP_003479308.1| - 0.2 11.7 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289580842|ref|YP_003479308.1| - 0.23 11.9 0.0 0.7 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain MutS_III PF05192.18 gi|289580842|ref|YP_003479308.1| - 1.1 9.4 7.3 2.5 8.3 7.3 1.5 1 1 0 1 1 1 0 MutS domain III THDPS_N_2 PF14805.6 gi|289580842|ref|YP_003479308.1| - 6.6 7.0 7.6 2.2 8.6 0.2 3.5 3 0 0 3 3 3 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal HAD_2 PF13419.6 gi|289580845|ref|YP_003479311.1| - 4.5e-13 49.7 0.0 5.6e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580845|ref|YP_003479311.1| - 2.6e-11 44.2 0.3 5e-10 40.0 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289580845|ref|YP_003479311.1| - 3.6e-05 23.7 0.0 8.8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289580845|ref|YP_003479311.1| - 0.00078 19.9 0.0 0.0011 19.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Peptidase_M10 PF00413.24 gi|289580845|ref|YP_003479311.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Matrixin Polyketide_cyc2 PF10604.9 gi|289580846|ref|YP_003479312.1| - 3.7e-16 59.7 0.3 4.1e-16 59.5 0.3 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|289580846|ref|YP_003479312.1| - 2.7e-08 34.1 0.1 3.2e-08 33.8 0.1 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|289580846|ref|YP_003479312.1| - 6.5e-07 29.6 0.0 7.7e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Epimerase PF01370.21 gi|289580847|ref|YP_003479313.1| - 4.3e-18 65.7 0.0 6e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|289580847|ref|YP_003479313.1| - 2.8e-09 36.5 0.0 3.9e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|289580847|ref|YP_003479313.1| - 1.1e-08 35.2 0.0 3e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|289580847|ref|YP_003479313.1| - 1.9e-08 33.8 0.0 2.8e-07 30.0 0.0 2.0 1 1 1 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|289580847|ref|YP_003479313.1| - 3.3e-08 33.0 0.7 9.8e-06 24.9 0.8 2.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|289580847|ref|YP_003479313.1| - 1.3e-07 30.9 0.0 2.6e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289580847|ref|YP_003479313.1| - 0.00016 21.2 0.0 0.0061 16.0 0.1 3.0 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 gi|289580847|ref|YP_003479313.1| - 0.021 15.0 0.0 0.045 13.9 0.0 1.6 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|289580847|ref|YP_003479313.1| - 0.04 13.8 0.0 4.7 7.1 0.0 2.2 1 1 1 2 2 2 0 KR domain Semialdhyde_dh PF01118.24 gi|289580847|ref|YP_003479313.1| - 0.055 13.9 0.2 0.14 12.6 0.2 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.25 gi|289580847|ref|YP_003479313.1| - 0.065 12.7 0.0 8.9 5.7 0.0 2.2 1 1 1 2 2 2 0 short chain dehydrogenase NmrA PF05368.13 gi|289580847|ref|YP_003479313.1| - 0.14 11.7 0.4 0.4 10.2 0.4 1.7 1 1 0 1 1 1 0 NmrA-like family LIM_bind PF01803.16 gi|289580847|ref|YP_003479313.1| - 0.2 11.2 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 LIM-domain binding protein DUF4231 PF14015.6 gi|289580848|ref|YP_003479314.1| - 1.2 9.6 6.4 4.7 7.7 6.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF202 PF02656.15 gi|289580848|ref|YP_003479314.1| - 8.3 6.9 13.3 56 4.3 10.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Mit_KHE1 PF10173.9 gi|289580849|ref|YP_003479315.1| - 0.0091 16.1 0.3 0.012 15.7 0.3 1.2 1 0 0 1 1 1 1 Mitochondrial K+-H+ exchange-related DUF3262 PF11660.8 gi|289580849|ref|YP_003479315.1| - 0.01 16.2 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) DUF4349 PF14257.6 gi|289580849|ref|YP_003479315.1| - 0.31 10.4 1.1 0.38 10.2 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) GST_N_2 PF13409.6 gi|289580850|ref|YP_003479316.1| - 6.3e-22 77.7 0.1 1.3e-21 76.6 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|289580850|ref|YP_003479316.1| - 1.9e-11 43.8 0.6 4.7e-11 42.6 0.6 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|289580850|ref|YP_003479316.1| - 6.1e-07 29.6 0.0 1.2e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|289580850|ref|YP_003479316.1| - 5.3e-06 26.7 0.1 0.00013 22.3 0.1 2.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|289580850|ref|YP_003479316.1| - 0.00023 20.9 0.1 0.00043 20.0 0.1 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|289580850|ref|YP_003479316.1| - 0.00038 20.6 0.0 0.00069 19.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain N6_N4_Mtase PF01555.18 gi|289580852|ref|YP_003479318.1| - 6.5e-12 45.6 0.0 1.6e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 DNA methylase SAPS PF04499.15 gi|289580852|ref|YP_003479318.1| - 0.11 11.3 0.1 0.14 10.9 0.1 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein UPF0020 PF01170.18 gi|289580852|ref|YP_003479318.1| - 0.13 12.0 0.2 2 8.1 0.2 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 TrkA_N PF02254.18 gi|289580853|ref|YP_003479319.1| - 5.5e-25 87.9 0.1 8.6e-25 87.3 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|289580853|ref|YP_003479319.1| - 1.9e-13 50.0 0.7 4.7e-13 48.8 0.0 1.9 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|289580853|ref|YP_003479319.1| - 1.5e-06 27.9 0.1 2.3e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|289580853|ref|YP_003479319.1| - 6.1e-05 23.4 0.4 0.00015 22.1 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding ApbA PF02558.16 gi|289580853|ref|YP_003479319.1| - 0.00075 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|289580853|ref|YP_003479319.1| - 0.00084 18.9 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|289580853|ref|YP_003479319.1| - 0.001 19.2 0.1 0.0014 18.7 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|289580853|ref|YP_003479319.1| - 0.0012 19.1 0.1 0.0028 17.9 0.1 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|289580853|ref|YP_003479319.1| - 0.0023 18.1 0.1 0.026 14.7 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|289580853|ref|YP_003479319.1| - 0.0025 17.7 0.0 0.004 17.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289580853|ref|YP_003479319.1| - 0.0032 16.9 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|289580853|ref|YP_003479319.1| - 0.0059 16.1 0.1 0.008 15.7 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|289580853|ref|YP_003479319.1| - 0.0073 15.6 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 gi|289580853|ref|YP_003479319.1| - 0.013 16.0 0.0 0.027 15.1 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|289580853|ref|YP_003479319.1| - 0.025 14.1 0.1 0.038 13.5 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family XdhC_C PF13478.6 gi|289580853|ref|YP_003479319.1| - 0.045 14.3 0.0 0.11 13.0 0.0 1.7 2 0 0 2 2 2 0 XdhC Rossmann domain YliH PF10799.8 gi|289580853|ref|YP_003479319.1| - 0.16 11.9 0.1 0.33 10.9 0.0 1.5 2 0 0 2 2 2 0 Biofilm formation protein (YliH/bssR) Xan_ur_permease PF00860.20 gi|289580854|ref|YP_003479320.1| - 1.4e-37 129.3 40.6 3.7e-37 127.9 40.6 1.6 1 1 0 1 1 1 1 Permease family Glutaredoxin PF00462.24 gi|289580855|ref|YP_003479321.1| - 2.2e-14 53.4 0.1 3e-14 53.0 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|289580855|ref|YP_003479321.1| - 7.6e-14 51.9 0.0 8.4e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|289580855|ref|YP_003479321.1| - 1.8e-07 31.4 0.0 2e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|289580855|ref|YP_003479321.1| - 3.1e-05 24.3 0.1 3.4e-05 24.2 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|289580855|ref|YP_003479321.1| - 0.00097 19.4 0.0 0.0012 19.2 0.0 1.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Pentapeptide_3 PF13576.6 gi|289580856|ref|YP_003479322.1| - 4.1e-16 58.9 23.1 2.1e-06 27.8 7.5 6.5 4 1 2 6 6 6 5 Pentapeptide repeats (9 copies) Bactofilin PF04519.13 gi|289580856|ref|YP_003479322.1| - 0.1 12.9 0.0 2 8.8 0.0 2.6 2 0 0 2 2 2 0 Polymer-forming cytoskeletal Ion_trans_2 PF07885.16 gi|289580856|ref|YP_003479322.1| - 0.29 11.1 2.7 0.6 10.1 2.7 1.6 1 0 0 1 1 1 0 Ion channel HTH_3 PF01381.22 gi|289580857|ref|YP_003479323.1| - 3.7e-09 36.5 0.0 5.8e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|289580857|ref|YP_003479323.1| - 2.2e-06 27.9 0.1 5.9e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|289580857|ref|YP_003479323.1| - 0.00064 19.6 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|289580857|ref|YP_003479323.1| - 0.0017 18.1 0.0 0.0055 16.5 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.6 gi|289580857|ref|YP_003479323.1| - 0.0024 17.7 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|289580857|ref|YP_003479323.1| - 0.0033 17.4 0.0 0.0061 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|289580857|ref|YP_003479323.1| - 0.013 15.0 0.5 0.028 13.9 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|289580857|ref|YP_003479323.1| - 0.1 12.5 0.1 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_10 PF04967.12 gi|289580857|ref|YP_003479323.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AraC PF00165.23 gi|289580857|ref|YP_003479323.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF1743 PF08489.11 gi|289580858|ref|YP_003479324.1| - 2.2e-40 137.3 0.0 4.2e-40 136.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) RNA_POL_M_15KD PF02150.16 gi|289580858|ref|YP_003479324.1| - 0.27 11.1 1.7 0.55 10.2 1.7 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc-ribbons_6 PF07191.12 gi|289580858|ref|YP_003479324.1| - 0.3 11.1 0.8 0.51 10.4 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons MMR_HSR1_Xtn PF16897.5 gi|289580861|ref|YP_003479327.1| - 1.8e-29 101.9 1.0 1.8e-29 101.9 1.0 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|289580861|ref|YP_003479327.1| - 1e-22 80.4 0.0 2.1e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|289580861|ref|YP_003479327.1| - 9.6e-14 51.2 1.6 1.8e-11 43.8 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.21 gi|289580861|ref|YP_003479327.1| - 6e-13 48.6 0.0 1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|289580861|ref|YP_003479327.1| - 4.9e-06 26.6 1.0 0.12 12.3 0.1 2.9 3 0 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|289580861|ref|YP_003479327.1| - 0.0001 22.4 1.2 0.23 11.5 0.2 2.8 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|289580861|ref|YP_003479327.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Arf PF00025.21 gi|289580861|ref|YP_003479327.1| - 0.011 15.2 0.1 1.1 8.7 0.0 2.4 2 1 0 2 2 2 0 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|289580861|ref|YP_003479327.1| - 0.019 14.5 0.0 0.11 12.0 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|289580861|ref|YP_003479327.1| - 0.037 13.0 0.1 1.6 7.6 0.0 2.5 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|289580861|ref|YP_003479327.1| - 0.046 14.2 0.2 0.4 11.2 0.0 2.2 2 0 0 2 2 2 0 ABC transporter Roc PF08477.13 gi|289580861|ref|YP_003479327.1| - 0.14 12.4 0.0 0.46 10.7 0.0 1.9 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase POTRA PF07244.15 gi|289580861|ref|YP_003479327.1| - 0.74 10.4 3.6 4.4 8.0 0.0 3.5 4 0 0 4 4 4 0 Surface antigen variable number repeat Na_H_antiporter PF03553.14 gi|289580862|ref|YP_003479328.1| - 9.4e-62 209.0 18.6 9.4e-62 209.0 18.6 3.1 1 1 1 2 2 2 1 Na+/H+ antiporter family CitMHS PF03600.16 gi|289580862|ref|YP_003479328.1| - 0.0013 18.0 33.9 0.019 14.2 7.2 2.7 1 1 1 2 2 2 2 Citrate transporter ArAE_2_N PF10337.9 gi|289580862|ref|YP_003479328.1| - 0.54 9.2 6.2 0.97 8.4 6.2 1.3 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal PetG PF02529.15 gi|289580862|ref|YP_003479328.1| - 7.7 6.5 7.0 3.2 7.7 0.4 3.5 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 Glyoxalase PF00903.25 gi|289580863|ref|YP_003479329.1| - 1.6e-16 60.6 2.9 6.7e-11 42.5 0.2 2.5 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289580863|ref|YP_003479329.1| - 7.8e-09 35.8 0.6 0.00089 19.5 0.1 4.0 3 1 1 4 4 4 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289580863|ref|YP_003479329.1| - 6.3e-07 30.2 1.7 0.014 16.2 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|289580863|ref|YP_003479329.1| - 0.00049 20.3 2.0 4.8 7.3 0.4 4.1 2 2 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|289580863|ref|YP_003479329.1| - 0.045 13.7 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 Glyoxalase-like domain Bac_transf PF02397.16 gi|289580864|ref|YP_003479330.1| - 2.9e-57 193.3 0.0 7.1e-57 192.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|289580864|ref|YP_003479330.1| - 2.7e-06 27.6 0.0 2.4e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1970) PsbM PF05151.12 gi|289580864|ref|YP_003479330.1| - 0.63 9.9 6.5 1.7 8.5 6.5 1.7 1 0 0 1 1 1 0 Photosystem II reaction centre M protein (PsbM) DDE_Tnp_1 PF01609.21 gi|289580865|ref|YP_003479331.1| - 1.9e-15 57.1 5.5 2.3e-15 56.9 3.4 2.0 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|289580865|ref|YP_003479331.1| - 0.00014 21.9 0.0 0.00023 21.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|289580865|ref|YP_003479331.1| - 0.00048 20.4 0.9 0.0016 18.7 0.5 2.1 2 1 0 2 2 2 1 Transposase DDE domain DUF4870 PF09685.10 gi|289580866|ref|YP_003479332.1| - 8e-15 54.9 4.9 1.4e-14 54.1 4.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4870) TraG_N PF07916.11 gi|289580866|ref|YP_003479332.1| - 0.024 13.5 3.1 0.029 13.2 3.1 1.1 1 0 0 1 1 1 0 TraG-like protein, N-terminal region DUF2207 PF09972.9 gi|289580866|ref|YP_003479332.1| - 0.033 13.0 1.4 0.038 12.8 1.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_2 PF12679.7 gi|289580866|ref|YP_003479332.1| - 0.65 9.2 6.2 0.68 9.2 0.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF4064 PF13273.6 gi|289580866|ref|YP_003479332.1| - 0.67 10.3 5.9 3.5 7.9 5.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DIM PF08194.12 gi|289580866|ref|YP_003479332.1| - 0.77 10.0 2.9 1.5 9.1 0.1 2.5 2 0 0 2 2 2 0 DIM protein Tetraspanin PF00335.20 gi|289580866|ref|YP_003479332.1| - 1.3 8.7 6.7 4.4 6.9 6.7 1.7 1 1 0 1 1 1 0 Tetraspanin family DUF4157 PF13699.6 gi|289580869|ref|YP_003479335.1| - 3.5e-27 94.4 0.2 8.9e-27 93.1 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) HMG_box_2 PF09011.10 gi|289580869|ref|YP_003479335.1| - 0.088 13.4 0.2 0.61 10.7 0.2 2.4 2 0 0 2 2 2 0 HMG-box domain Med26_M PF15694.5 gi|289580869|ref|YP_003479335.1| - 0.088 12.8 0.3 0.21 11.6 0.3 1.6 1 0 0 1 1 1 0 Mediator complex subunit 26 middle domain YuzL PF14115.6 gi|289580869|ref|YP_003479335.1| - 1.3 9.6 4.0 4.6 7.8 4.0 1.9 1 0 0 1 1 1 0 YuzL-like protein DUF2270 PF10028.9 gi|289580871|ref|YP_003479337.1| - 1.4e-71 239.9 4.8 1.6e-71 239.7 4.8 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) SPC12 PF06645.13 gi|289580871|ref|YP_003479337.1| - 0.076 13.1 6.8 6.5 6.9 4.3 2.5 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2207 PF09972.9 gi|289580871|ref|YP_003479337.1| - 0.11 11.2 0.6 5.3 5.7 1.4 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) FixQ PF05545.11 gi|289580871|ref|YP_003479337.1| - 0.55 10.2 7.8 30 4.7 3.0 3.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF4282 PF14110.6 gi|289580871|ref|YP_003479337.1| - 6.6 7.5 10.7 3.1 8.6 5.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) MarR_2 PF12802.7 gi|289580872|ref|YP_003479338.1| - 0.00026 20.8 0.7 0.00086 19.1 0.4 1.9 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|289580872|ref|YP_003479338.1| - 0.0045 16.7 0.3 0.0096 15.7 0.3 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289580872|ref|YP_003479338.1| - 0.055 13.3 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|289580872|ref|YP_003479338.1| - 0.066 13.3 0.2 0.14 12.3 0.2 1.5 1 0 0 1 1 1 0 DprA winged helix domain Trp_repressor PF01371.19 gi|289580872|ref|YP_003479338.1| - 0.096 12.8 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Trp repressor protein MarR PF01047.22 gi|289580872|ref|YP_003479338.1| - 0.11 12.4 0.0 0.46 10.4 0.0 2.1 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 gi|289580872|ref|YP_003479338.1| - 0.14 12.2 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1059 PF06348.11 gi|289580873|ref|YP_003479339.1| - 0.00021 21.4 1.3 0.00021 21.4 1.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1059) MmoB_DmpM PF02406.17 gi|289580873|ref|YP_003479339.1| - 0.037 14.2 0.2 0.056 13.7 0.2 1.4 1 0 0 1 1 1 0 MmoB/DmpM family Methyltransf_31 PF13847.6 gi|289580874|ref|YP_003479340.1| - 4.7e-31 107.6 0.0 6.2e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289580874|ref|YP_003479340.1| - 3.2e-20 72.6 0.1 6.6e-20 71.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289580874|ref|YP_003479340.1| - 1.2e-19 70.8 0.1 2.1e-19 70.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289580874|ref|YP_003479340.1| - 6.2e-15 55.2 0.0 9e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|289580874|ref|YP_003479340.1| - 8.5e-11 42.5 0.0 1.4e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580874|ref|YP_003479340.1| - 2.8e-10 40.3 0.0 3.7e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289580874|ref|YP_003479340.1| - 4.4e-08 33.1 0.0 5.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|289580874|ref|YP_003479340.1| - 1.2e-06 28.0 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|289580874|ref|YP_003479340.1| - 4.9e-06 26.1 0.0 6.9e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|289580874|ref|YP_003479340.1| - 1.6e-05 24.5 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|289580874|ref|YP_003479340.1| - 0.00018 20.5 0.0 0.00025 20.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.6 gi|289580874|ref|YP_003479340.1| - 0.002 19.1 0.1 0.0047 17.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|289580874|ref|YP_003479340.1| - 0.0055 16.7 0.0 0.0082 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|289580874|ref|YP_003479340.1| - 0.042 13.5 0.1 0.32 10.7 0.1 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|289580874|ref|YP_003479340.1| - 0.074 12.6 0.2 0.16 11.5 0.2 1.5 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|289580874|ref|YP_003479340.1| - 0.1 11.1 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|289580874|ref|YP_003479340.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase FtsJ PF01728.19 gi|289580874|ref|YP_003479340.1| - 0.16 12.0 0.0 0.26 11.4 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase N6_N4_Mtase PF01555.18 gi|289580874|ref|YP_003479340.1| - 0.18 11.5 0.1 2.5 7.7 0.1 2.0 2 0 0 2 2 2 0 DNA methylase DOT1 PF08123.13 gi|289580874|ref|YP_003479340.1| - 0.23 11.0 0.1 0.39 10.2 0.1 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 VKG_Carbox PF05090.14 gi|289580875|ref|YP_003479341.1| - 2.5e-14 53.0 3.8 3.4e-14 52.5 3.8 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase FH2 PF02181.23 gi|289580876|ref|YP_003479342.1| - 0.032 13.3 0.1 0.044 12.9 0.1 1.3 1 1 0 1 1 1 0 Formin Homology 2 Domain SlyX PF04102.12 gi|289580876|ref|YP_003479342.1| - 0.079 13.6 2.1 0.13 12.9 0.1 2.1 2 1 0 2 2 2 0 SlyX DUF1192 PF06698.11 gi|289580876|ref|YP_003479342.1| - 0.37 10.9 3.7 5.2 7.2 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Neisseria_TspB PF05616.13 gi|289580877|ref|YP_003479343.1| - 0.23 9.9 9.7 0.23 9.9 9.7 1.0 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein FAM176 PF14851.6 gi|289580877|ref|YP_003479343.1| - 0.98 9.1 4.1 1.2 8.7 4.1 1.3 1 0 0 1 1 1 0 FAM176 family Astro_capsid_p PF12226.8 gi|289580877|ref|YP_003479343.1| - 3.1 6.9 15.2 3.6 6.6 15.2 1.1 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Glycos_transf_2 PF00535.26 gi|289580878|ref|YP_003479344.1| - 8e-27 94.1 0.1 1.3e-26 93.5 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289580878|ref|YP_003479344.1| - 7.3e-14 52.2 0.3 2.6e-13 50.4 0.3 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|289580878|ref|YP_003479344.1| - 2.2e-11 43.8 0.0 1.5e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|289580878|ref|YP_003479344.1| - 9.9e-07 28.4 0.0 1.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|289580878|ref|YP_003479344.1| - 4.1e-06 26.9 0.0 2.3e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|289580878|ref|YP_003479344.1| - 0.0006 20.3 0.1 0.0018 18.7 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|289580878|ref|YP_003479344.1| - 0.036 13.7 0.0 0.17 11.6 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase like family SgrT PF15894.5 gi|289580878|ref|YP_003479344.1| - 0.057 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Inhibitor of glucose uptake transporter SgrT Putative_PNPOx PF01243.20 gi|289580879|ref|YP_003479345.1| - 4.9e-14 52.3 0.0 6.7e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|289580879|ref|YP_003479345.1| - 2.6e-11 43.7 0.4 3.3e-11 43.3 0.4 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|289580879|ref|YP_003479345.1| - 0.0052 16.4 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like BPS PF08947.10 gi|289580879|ref|YP_003479345.1| - 0.094 12.5 0.1 0.37 10.6 0.1 1.9 2 0 0 2 2 2 0 BPS (Between PH and SH2) TspO_MBR PF03073.15 gi|289580880|ref|YP_003479346.1| - 9.5e-38 129.3 21.4 1.1e-37 129.1 21.4 1.0 1 0 0 1 1 1 1 TspO/MBR family MHYT PF03707.16 gi|289580880|ref|YP_003479346.1| - 0.045 13.9 10.0 0.88 9.8 2.7 3.2 3 1 0 3 3 3 0 Bacterial signalling protein N terminal repeat NIF3 PF01784.18 gi|289580881|ref|YP_003479347.1| - 8.4e-53 179.5 0.0 9.7e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Methyltransf_11 PF08241.12 gi|289580882|ref|YP_003479348.1| - 3.5e-12 46.8 0.0 6e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289580882|ref|YP_003479348.1| - 5.4e-12 46.3 0.0 9.1e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289580882|ref|YP_003479348.1| - 6.6e-10 39.1 0.0 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289580882|ref|YP_003479348.1| - 2.4e-08 33.9 0.0 3.1e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|289580882|ref|YP_003479348.1| - 2.1e-07 30.7 0.0 3.7e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|289580882|ref|YP_003479348.1| - 9.5e-06 26.3 0.0 1.7e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|289580882|ref|YP_003479348.1| - 0.0086 15.0 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|289580882|ref|YP_003479348.1| - 0.023 14.1 0.0 0.043 13.2 0.0 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB PrmA PF06325.13 gi|289580882|ref|YP_003479348.1| - 0.067 12.6 0.0 0.09 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmdA_AmdA PF03069.15 gi|289580883|ref|YP_003479349.1| - 1.3e-32 113.1 1.0 2.4e-16 59.6 0.1 2.4 1 1 1 2 2 2 2 Acetamidase/Formamidase family Neocarzinostat PF00960.18 gi|289580883|ref|YP_003479349.1| - 0.11 12.5 0.1 0.33 11.0 0.1 1.8 1 0 0 1 1 1 0 Neocarzinostatin family Arginase PF00491.21 gi|289580884|ref|YP_003479350.1| - 1.9e-57 194.9 0.2 2.3e-57 194.6 0.2 1.0 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|289580885|ref|YP_003479351.1| - 0.0032 17.5 0.1 0.81 9.8 0.0 2.2 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|289580885|ref|YP_003479351.1| - 0.0058 16.7 1.3 0.0092 16.1 1.3 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|289580885|ref|YP_003479351.1| - 0.0095 16.0 1.1 0.015 15.3 1.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PQQ_2 PF13360.6 gi|289580887|ref|YP_003479353.1| - 1.7e-26 93.3 15.9 1.5e-19 70.5 10.7 3.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|289580887|ref|YP_003479353.1| - 6.3e-15 55.1 30.6 0.016 15.7 0.0 8.2 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|289580887|ref|YP_003479353.1| - 1.4e-13 50.0 7.4 0.015 15.2 0.0 5.8 5 0 0 5 5 5 5 PQQ enzyme repeat MAAL_C PF07476.11 gi|289580888|ref|YP_003479354.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Ferrochelatase PF00762.19 gi|289580888|ref|YP_003479354.1| - 0.039 13.0 0.0 0.056 12.5 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase MR_MLE_C PF13378.6 gi|289580888|ref|YP_003479354.1| - 0.045 13.3 0.0 0.11 12.0 0.0 1.8 1 1 0 1 1 1 0 Enolase C-terminal domain-like ABC1 PF03109.16 gi|289580889|ref|YP_003479355.1| - 1.6e-27 96.0 0.0 3.6e-27 94.9 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|289580889|ref|YP_003479355.1| - 0.006 16.5 2.4 0.066 13.1 0.8 3.2 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|289580889|ref|YP_003479355.1| - 0.0078 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain EcsB PF05975.12 gi|289580889|ref|YP_003479355.1| - 0.15 10.8 1.1 0.25 10.1 1.1 1.2 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF1707 PF08044.11 gi|289580889|ref|YP_003479355.1| - 0.36 10.9 5.2 1.6 8.8 2.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) HSP20 PF00011.21 gi|289580890|ref|YP_003479356.1| - 5.6e-11 42.5 0.0 8.4e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|289580890|ref|YP_003479356.1| - 0.0016 17.9 0.1 0.0042 16.6 0.1 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA ATPgrasp_Ter PF15632.6 gi|289580890|ref|YP_003479356.1| - 0.078 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon RRN3 PF05327.11 gi|289580890|ref|YP_003479356.1| - 8.2 4.8 7.5 11 4.4 7.5 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 MoeA_N PF03453.17 gi|289580891|ref|YP_003479357.1| - 5.3e-41 140.0 5.8 8.2e-41 139.4 5.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|289580891|ref|YP_003479357.1| - 1.7e-23 82.9 0.1 3e-23 82.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|289580891|ref|YP_003479357.1| - 3.7e-17 62.3 0.0 3.7e-17 62.3 0.0 3.1 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|289580892|ref|YP_003479358.1| - 2.6e-37 128.0 3.7 4.8e-37 127.2 3.7 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|289580892|ref|YP_003479358.1| - 1.1e-23 83.5 0.0 2e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|289580892|ref|YP_003479358.1| - 9.4e-23 80.3 0.1 4.6e-22 78.1 0.0 2.2 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.15 gi|289580892|ref|YP_003479358.1| - 1.9e-10 40.7 0.3 2.8e-09 37.0 0.1 2.6 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|289580892|ref|YP_003479358.1| - 0.04 13.6 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein HTH_10 PF04967.12 gi|289580893|ref|YP_003479359.1| - 4.4e-17 61.6 0.1 1.3e-16 60.2 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|289580893|ref|YP_003479359.1| - 7.1e-05 22.7 4.2 0.00011 22.1 4.2 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AraC PF00165.23 gi|289580893|ref|YP_003479359.1| - 0.0019 18.2 0.0 0.0088 16.1 0.0 2.1 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.22 gi|289580893|ref|YP_003479359.1| - 0.0036 17.3 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.6 gi|289580893|ref|YP_003479359.1| - 0.0036 16.8 0.0 0.0089 15.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289580893|ref|YP_003479359.1| - 0.0045 16.8 0.0 0.018 14.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|289580893|ref|YP_003479359.1| - 0.0059 16.4 0.2 0.014 15.2 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_psq PF05225.16 gi|289580893|ref|YP_003479359.1| - 0.017 14.8 0.4 0.049 13.4 0.4 1.8 1 1 0 1 1 1 0 helix-turn-helix, Psq domain GntR PF00392.21 gi|289580893|ref|YP_003479359.1| - 0.018 14.7 0.7 0.29 10.8 0.3 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|289580893|ref|YP_003479359.1| - 0.032 13.8 0.7 0.089 12.3 0.7 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 NIR_SIR_ferr PF03460.17 gi|289580893|ref|YP_003479359.1| - 0.034 14.0 0.1 0.066 13.1 0.1 1.4 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain TetR_N PF00440.23 gi|289580893|ref|YP_003479359.1| - 0.058 13.2 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 gi|289580893|ref|YP_003479359.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_18 PF12833.7 gi|289580893|ref|YP_003479359.1| - 0.17 12.2 0.8 2.4 8.5 0.1 2.6 1 1 1 3 3 3 0 Helix-turn-helix domain HAD_2 PF13419.6 gi|289580894|ref|YP_003479360.1| - 3.9e-10 40.1 0.0 1.3e-09 38.4 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289580894|ref|YP_003479360.1| - 4.7e-08 33.6 0.1 2.8e-06 27.8 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289580894|ref|YP_003479360.1| - 6.9e-06 26.6 0.4 1.1e-05 25.9 0.4 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pterin_4a PF01329.19 gi|289580896|ref|YP_003479362.1| - 2.5e-23 82.0 0.0 3.1e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase GlutR_N PF05201.15 gi|289580897|ref|YP_003479363.1| - 5.7e-34 117.0 0.0 1.4e-33 115.7 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|289580897|ref|YP_003479363.1| - 7.2e-32 110.3 1.4 1.8e-31 109.0 0.7 2.1 2 1 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|289580897|ref|YP_003479363.1| - 7.8e-22 77.5 0.7 2.6e-21 75.9 0.4 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|289580897|ref|YP_003479363.1| - 1.8e-05 24.2 0.1 3.3e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|289580897|ref|YP_003479363.1| - 2.5e-05 24.5 0.1 8.1e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|289580897|ref|YP_003479363.1| - 5.5e-05 23.6 0.7 0.00017 22.0 0.2 2.1 2 0 0 2 2 1 1 Putative NAD(P)-binding OCD_Mu_crystall PF02423.15 gi|289580897|ref|YP_003479363.1| - 7e-05 21.9 0.3 7e-05 21.9 0.3 1.7 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family Glu_dehyd_C PF16912.5 gi|289580897|ref|YP_003479363.1| - 7e-05 22.4 2.5 0.00014 21.4 0.8 2.5 2 1 0 2 2 2 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|289580897|ref|YP_003479363.1| - 0.00017 22.1 0.7 0.00072 20.1 0.1 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|289580897|ref|YP_003479363.1| - 0.00078 19.7 1.8 0.062 13.6 0.1 3.4 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|289580897|ref|YP_003479363.1| - 0.0052 16.1 2.1 0.012 14.9 2.1 1.8 1 1 0 1 1 1 1 FAD binding domain ThiF PF00899.21 gi|289580897|ref|YP_003479363.1| - 0.0078 15.6 0.4 0.019 14.4 0.4 1.6 1 0 0 1 1 1 1 ThiF family TrkA_N PF02254.18 gi|289580897|ref|YP_003479363.1| - 0.038 14.2 0.4 0.15 12.3 0.4 2.1 1 0 0 1 1 1 0 TrkA-N domain AdoHcyase_NAD PF00670.21 gi|289580897|ref|YP_003479363.1| - 0.05 13.7 0.6 0.21 11.6 0.5 1.9 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Nitro_FeMo-Co PF02579.17 gi|289580897|ref|YP_003479363.1| - 0.1 13.0 0.8 0.37 11.1 0.3 2.2 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor NAD_binding_7 PF13241.6 gi|289580898|ref|YP_003479364.1| - 2.1e-24 86.0 0.1 4.4e-24 84.9 0.1 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|289580898|ref|YP_003479364.1| - 0.00012 21.4 0.0 0.00038 19.9 0.0 1.9 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|289580898|ref|YP_003479364.1| - 0.0019 17.9 0.1 0.005 16.5 0.1 1.8 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region TrkA_N PF02254.18 gi|289580898|ref|YP_003479364.1| - 0.017 15.4 0.1 4.6 7.5 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Thi4 PF01946.17 gi|289580898|ref|YP_003479364.1| - 0.07 12.4 0.0 5.5 6.2 0.0 2.1 2 0 0 2 2 2 0 Thi4 family PcrB PF01884.17 gi|289580898|ref|YP_003479364.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 PcrB family AsnC_trans_reg2 PF17805.1 gi|289580899|ref|YP_003479365.1| - 4.9e-50 167.6 0.3 5.6e-25 87.3 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain DUF3493 PF11998.8 gi|289580900|ref|YP_003479366.1| - 1.1 9.5 8.8 0.56 10.4 0.4 3.1 3 0 0 3 3 3 0 Low psii accumulation1 / Rep27 DUF4229 PF14012.6 gi|289580900|ref|YP_003479366.1| - 6.1 7.0 13.3 3.2 7.9 0.7 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF4229) Prenyltransf PF01255.19 gi|289580902|ref|YP_003479368.1| - 3.7e-64 216.3 0.0 4.6e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Cob_adeno_trans PF01923.18 gi|289580902|ref|YP_003479368.1| - 0.12 12.5 0.3 0.71 10.0 0.0 2.1 2 0 0 2 2 2 0 Cobalamin adenosyltransferase Prenyltransf PF01255.19 gi|289580904|ref|YP_003479370.1| - 1e-23 84.1 0.0 1.8e-23 83.3 0.0 1.4 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|289580905|ref|YP_003479371.1| - 1.7e-49 168.4 20.1 1.7e-49 168.4 20.1 3.6 2 2 0 2 2 2 1 Integral membrane protein DUF92 Toprim_4 PF13662.6 gi|289580907|ref|YP_003479373.1| - 1.1e-10 41.8 0.7 3.8e-10 40.1 0.2 2.2 2 1 1 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|289580907|ref|YP_003479373.1| - 6.6e-06 26.5 1.2 2.1e-05 24.8 0.0 2.4 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|289580907|ref|YP_003479373.1| - 0.02 15.1 0.2 0.1 12.9 0.2 2.2 1 1 0 1 1 1 0 Toprim domain Aminotran_4 PF01063.19 gi|289580907|ref|YP_003479373.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Amino-transferase class IV PRP38_assoc PF12871.7 gi|289580907|ref|YP_003479373.1| - 4.8 7.8 18.8 3.5 8.3 16.5 2.0 1 1 1 2 2 2 0 Pre-mRNA-splicing factor 38-associated hydrophilic C-term HTH_20 PF12840.7 gi|289580908|ref|YP_003479374.1| - 4.8e-15 55.4 0.0 9.5e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289580908|ref|YP_003479374.1| - 7.7e-07 28.6 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289580908|ref|YP_003479374.1| - 4.5e-05 23.2 0.0 6.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|289580908|ref|YP_003479374.1| - 7.4e-05 22.6 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family FaeA PF04703.12 gi|289580908|ref|YP_003479374.1| - 0.00077 19.8 0.1 0.0017 18.6 0.0 1.6 2 0 0 2 2 2 1 FaeA-like protein TrmB PF01978.19 gi|289580908|ref|YP_003479374.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|289580908|ref|YP_003479374.1| - 0.052 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.10 gi|289580908|ref|YP_003479374.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|289580908|ref|YP_003479374.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family ArsR PF09824.9 gi|289580908|ref|YP_003479374.1| - 0.25 10.9 0.0 0.39 10.3 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF3311 PF11755.8 gi|289580909|ref|YP_003479375.1| - 1.2e-16 60.3 15.6 1.5e-16 60.1 15.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.8 gi|289580909|ref|YP_003479375.1| - 0.07 13.0 0.3 0.068 13.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4079 PF13301.6 gi|289580909|ref|YP_003479375.1| - 0.082 13.1 6.2 0.1 12.8 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) TRAP-gamma PF07074.12 gi|289580909|ref|YP_003479375.1| - 0.11 12.0 0.4 0.14 11.7 0.4 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) SSF PF00474.17 gi|289580910|ref|YP_003479376.1| - 4e-39 134.6 27.3 6e-39 134.1 27.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Laminin_I PF06008.14 gi|289580912|ref|YP_003479378.1| - 0.055 13.2 1.2 0.1 12.3 1.2 1.4 1 0 0 1 1 1 0 Laminin Domain I CopD PF05425.13 gi|289580913|ref|YP_003479379.1| - 0.0048 17.3 9.7 0.0048 17.3 9.7 1.7 2 0 0 2 2 2 1 Copper resistance protein D DUF2269 PF10027.9 gi|289580913|ref|YP_003479379.1| - 0.088 12.9 12.5 0.14 12.2 12.5 1.4 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) HTH_20 PF12840.7 gi|289580914|ref|YP_003479380.1| - 1.8e-09 37.5 0.0 2.6e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|289580914|ref|YP_003479380.1| - 0.0021 17.9 0.0 0.013 15.4 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF1492 PF07374.11 gi|289580914|ref|YP_003479380.1| - 0.013 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) MarR_2 PF12802.7 gi|289580914|ref|YP_003479380.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|289580914|ref|YP_003479380.1| - 0.021 14.7 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|289580914|ref|YP_003479380.1| - 0.053 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Phage_CI_repr PF07022.13 gi|289580914|ref|YP_003479380.1| - 0.096 12.8 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain RP-C PF03428.13 gi|289580914|ref|YP_003479380.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF202 PF02656.15 gi|289580915|ref|YP_003479381.1| - 4 7.9 9.4 7.4 7.1 5.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF3007 PF11460.8 gi|289580915|ref|YP_003479381.1| - 4.5 7.6 5.7 3.3 8.0 2.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) DUF4199 PF13858.6 gi|289580915|ref|YP_003479381.1| - 5.7 7.3 12.0 0.13 12.6 3.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) MMPL PF03176.15 gi|289580916|ref|YP_003479382.1| - 2.2e-24 86.0 44.1 6.9e-19 68.0 20.1 3.5 3 2 1 4 4 4 2 MMPL family Sterol-sensing PF12349.8 gi|289580916|ref|YP_003479382.1| - 6.2e-13 48.8 5.4 1.2e-05 25.2 0.3 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|289580916|ref|YP_003479382.1| - 4.3e-10 38.4 21.0 8.7e-10 37.4 6.6 2.8 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.16 gi|289580916|ref|YP_003479382.1| - 5.5e-05 22.6 12.4 0.014 14.8 0.8 2.8 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 gi|289580916|ref|YP_003479382.1| - 0.0064 14.2 14.9 0.0048 14.6 6.0 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family MMPL PF03176.15 gi|289580917|ref|YP_003479383.1| - 1.8e-21 76.4 56.9 5.2e-18 65.1 24.3 4.2 3 2 1 4 4 4 2 MMPL family Sterol-sensing PF12349.8 gi|289580917|ref|YP_003479383.1| - 7e-10 39.0 16.9 3.1e-06 27.1 1.3 3.6 2 2 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|289580917|ref|YP_003479383.1| - 7.8e-09 34.2 18.0 7.4e-08 31.0 7.4 2.2 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|289580917|ref|YP_003479383.1| - 0.0015 17.9 11.6 0.18 11.2 5.2 2.7 2 0 0 2 2 2 2 Protein export membrane protein FliP PF00813.20 gi|289580917|ref|YP_003479383.1| - 0.0048 16.8 0.9 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 FliP family tRNA-synt_1 PF00133.22 gi|289580919|ref|YP_003479385.1| - 2.3e-125 419.2 0.2 4.4e-124 414.9 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|289580919|ref|YP_003479385.1| - 6.2e-35 120.4 0.0 1.5e-34 119.2 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|289580919|ref|YP_003479385.1| - 1.5e-20 73.4 0.3 1e-09 37.7 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|289580919|ref|YP_003479385.1| - 8.1e-07 28.7 0.0 2.1e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|289580919|ref|YP_003479385.1| - 7.2e-05 22.3 0.0 0.0025 17.2 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|289580919|ref|YP_003479385.1| - 0.00067 18.7 0.0 0.003 16.5 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|289580919|ref|YP_003479385.1| - 0.0059 16.7 4.0 0.087 13.0 1.3 2.7 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.7 gi|289580919|ref|YP_003479385.1| - 0.008 16.2 0.5 0.46 10.5 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon Lipoprotein_18 PF06804.11 gi|289580919|ref|YP_003479385.1| - 0.087 11.9 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 NlpB/DapX lipoprotein SpecificRecomb PF10136.9 gi|289580919|ref|YP_003479385.1| - 0.16 10.3 0.0 0.24 9.7 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase UPF0547 PF10571.9 gi|289580919|ref|YP_003479385.1| - 0.34 11.0 4.2 9.5 6.4 0.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3727 PF12527.8 gi|289580920|ref|YP_003479386.1| - 2.4 8.5 6.1 0.4 10.9 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3727) ABC2_membrane_2 PF12679.7 gi|289580921|ref|YP_003479387.1| - 3.5e-16 59.3 15.3 5.5e-16 58.7 15.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289580921|ref|YP_003479387.1| - 1.5e-05 24.3 9.2 1.5e-05 24.3 9.2 2.2 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289580921|ref|YP_003479387.1| - 0.34 10.4 13.1 0.04 13.5 7.7 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|289580922|ref|YP_003479388.1| - 1.1e-13 51.2 17.1 2.2e-13 50.1 17.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289580922|ref|YP_003479388.1| - 1.3e-06 27.7 12.3 1.3e-06 27.7 12.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|289580922|ref|YP_003479388.1| - 0.00032 20.2 11.5 0.00032 20.2 11.5 1.8 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|289580922|ref|YP_003479388.1| - 0.13 12.2 12.7 0.049 13.6 8.7 2.2 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289580922|ref|YP_003479388.1| - 1.5 8.3 12.9 0.013 15.0 4.1 2.0 3 0 0 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289580923|ref|YP_003479389.1| - 2.7e-24 86.2 0.0 4.4e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289580923|ref|YP_003479389.1| - 1.6e-09 38.0 1.4 1.6e-05 24.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|289580923|ref|YP_003479389.1| - 0.087 13.0 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289580923|ref|YP_003479389.1| - 0.099 12.3 0.0 0.29 10.8 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|289580923|ref|YP_003479389.1| - 0.11 12.1 0.0 0.61 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF1405 PF07187.11 gi|289580924|ref|YP_003479390.1| - 1e-48 165.3 17.4 1.2e-48 165.0 17.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) bPH_2 PF03703.14 gi|289580925|ref|YP_003479391.1| - 1.5e-09 37.9 0.0 1.7e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial PH domain SOR_SNZ PF01680.17 gi|289580926|ref|YP_003479392.1| - 1.7e-103 344.8 8.1 2.2e-103 344.4 8.1 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|289580926|ref|YP_003479392.1| - 1.6e-09 37.5 6.2 1.7e-05 24.2 0.6 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|289580926|ref|YP_003479392.1| - 0.0031 16.6 0.6 0.94 8.5 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|289580926|ref|YP_003479392.1| - 0.0064 16.1 0.2 0.57 9.7 0.1 2.4 1 1 1 2 2 2 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|289580926|ref|YP_003479392.1| - 0.033 13.3 0.0 0.78 8.8 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.16 gi|289580926|ref|YP_003479392.1| - 0.099 12.0 1.9 1.4 8.3 0.0 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family Peptidase_S8 PF00082.22 gi|289580927|ref|YP_003479393.1| - 1.4e-43 149.3 7.1 2.4e-43 148.5 7.1 1.3 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|289580927|ref|YP_003479393.1| - 0.091 12.6 0.5 0.091 12.6 0.5 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence SASP_gamma PF04259.14 gi|289580927|ref|YP_003479393.1| - 0.34 11.5 3.3 0.41 11.2 0.3 2.6 3 0 0 3 3 3 0 Small, acid-soluble spore protein, gamma-type GP40 PF11025.8 gi|289580927|ref|YP_003479393.1| - 0.45 10.3 4.9 0.19 11.5 1.5 2.0 2 0 0 2 2 2 0 Glycoprotein GP40 of Cryptosporidium VirB3 PF05101.13 gi|289580928|ref|YP_003479394.1| - 0.11 12.7 0.0 0.11 12.7 0.0 2.3 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein GHMP_kinases_N PF00288.26 gi|289580929|ref|YP_003479395.1| - 4.9e-14 52.3 5.2 5.3e-14 52.2 2.4 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|289580929|ref|YP_003479395.1| - 4.1e-09 36.7 0.1 9.2e-09 35.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal MCPsignal PF00015.21 gi|289580930|ref|YP_003479396.1| - 1.2e-29 103.3 73.2 5.1e-29 101.3 30.5 4.5 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289580930|ref|YP_003479396.1| - 2e-08 34.5 13.5 1.6e-06 28.4 0.4 4.4 4 1 0 4 4 4 2 HAMP domain DUF948 PF06103.11 gi|289580930|ref|YP_003479396.1| - 0.00019 21.6 48.0 0.039 14.2 3.8 6.6 2 2 4 6 6 6 5 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|289580930|ref|YP_003479396.1| - 0.0022 18.0 8.4 0.0022 18.0 8.4 5.4 3 2 2 5 5 5 3 Laminin Domain II Syntaxin_2 PF14523.6 gi|289580930|ref|YP_003479396.1| - 0.059 13.7 18.9 1.4 9.3 3.5 4.8 2 1 0 3 3 3 0 Syntaxin-like protein DUF1664 PF07889.12 gi|289580930|ref|YP_003479396.1| - 0.41 10.7 38.9 0.14 12.2 5.7 5.6 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|289580930|ref|YP_003479396.1| - 0.65 10.2 37.0 0.48 10.7 6.3 5.5 2 1 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Serum_albumin PF00273.20 gi|289580930|ref|YP_003479396.1| - 2.6 7.8 6.6 2.8 7.7 0.6 2.9 2 1 1 3 3 3 0 Serum albumin family DUF2203 PF09969.9 gi|289580930|ref|YP_003479396.1| - 3.2 8.5 42.2 0.032 15.0 4.8 5.5 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fib_alpha PF08702.10 gi|289580930|ref|YP_003479396.1| - 3.3 7.9 30.2 3 8.0 1.8 4.6 2 1 2 5 5 5 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|289580930|ref|YP_003479396.1| - 9.8 5.0 55.6 0.098 11.5 13.6 4.5 1 1 2 4 4 4 0 Spc7 kinetochore protein Peripla_BP_6 PF13458.6 gi|289580931|ref|YP_003479397.1| - 3.5e-46 158.5 9.3 6e-46 157.7 9.3 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|289580931|ref|YP_003479397.1| - 8.6e-17 61.3 0.1 1.3e-15 57.4 0.1 2.1 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|289580931|ref|YP_003479397.1| - 2.2e-13 50.0 0.0 2.5e-06 26.8 0.0 2.9 2 1 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|289580931|ref|YP_003479397.1| - 2.6e-05 23.9 0.7 2.6e-05 23.9 0.7 3.0 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence PA PF02225.22 gi|289580931|ref|YP_003479397.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 PA domain DUF3546 PF12066.8 gi|289580932|ref|YP_003479398.1| - 0.041 14.1 1.0 0.67 10.2 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3546) Pyr_redox_2 PF07992.14 gi|289580933|ref|YP_003479399.1| - 5.6e-47 160.4 0.1 7.4e-47 160.0 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289580933|ref|YP_003479399.1| - 1.1e-11 45.2 0.2 3.8e-06 27.4 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289580933|ref|YP_003479399.1| - 1.2e-11 44.5 0.0 8.1e-09 35.2 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|289580933|ref|YP_003479399.1| - 1.6e-08 34.3 0.1 4.2e-07 29.8 0.0 3.1 4 0 0 4 4 4 1 Rubredoxin NAD+ reductase C-terminal domain HI0933_like PF03486.14 gi|289580933|ref|YP_003479399.1| - 0.00049 18.9 0.0 0.046 12.4 0.0 2.9 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|289580933|ref|YP_003479399.1| - 0.0016 18.1 0.4 1.7 8.2 0.0 3.3 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|289580933|ref|YP_003479399.1| - 0.0017 18.5 0.5 0.8 10.0 0.0 3.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|289580933|ref|YP_003479399.1| - 0.17 11.9 3.2 3.8 7.5 0.0 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding Usp PF00582.26 gi|289580934|ref|YP_003479400.1| - 1.4e-31 109.9 0.3 1.6e-31 109.7 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family NrfD PF03916.14 gi|289580935|ref|YP_003479401.1| - 7.3e-22 78.4 24.8 7.3e-22 78.4 24.8 1.8 3 0 0 3 3 3 1 Polysulphide reductase, NrfD His_biosynth PF00977.21 gi|289580936|ref|YP_003479402.1| - 2.7e-05 23.8 0.0 6.7e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|289580936|ref|YP_003479402.1| - 0.00081 18.5 4.2 0.0028 16.7 1.1 2.3 2 1 1 3 3 3 1 FMN-dependent dehydrogenase TIM PF00121.18 gi|289580936|ref|YP_003479402.1| - 0.0018 17.7 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase PcrB PF01884.17 gi|289580936|ref|YP_003479402.1| - 0.0034 16.9 0.1 0.16 11.4 0.0 2.1 2 0 0 2 2 2 1 PcrB family PdxJ PF03740.13 gi|289580936|ref|YP_003479402.1| - 0.036 13.2 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ QRPTase_C PF01729.19 gi|289580936|ref|YP_003479402.1| - 0.093 12.5 0.0 0.27 11.0 0.0 1.8 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain G3P_antiterm PF04309.12 gi|289580936|ref|YP_003479402.1| - 0.12 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator DUF4407 PF14362.6 gi|289580938|ref|YP_003479404.1| - 0.00057 19.3 4.3 0.0007 19.0 4.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|289580938|ref|YP_003479404.1| - 0.036 14.4 1.3 8.5 6.7 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF5082) FTA4 PF13093.6 gi|289580938|ref|YP_003479404.1| - 0.046 13.6 0.2 0.058 13.3 0.2 1.2 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Spc7 PF08317.11 gi|289580938|ref|YP_003479404.1| - 0.057 12.3 4.6 0.14 11.1 4.5 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein FadA PF09403.10 gi|289580938|ref|YP_003479404.1| - 0.14 12.6 4.5 0.14 12.7 2.3 1.9 2 0 0 2 2 2 0 Adhesion protein FadA Spectrin PF00435.21 gi|289580938|ref|YP_003479404.1| - 0.17 12.4 3.9 2 8.9 1.2 2.3 2 0 0 2 2 2 0 Spectrin repeat Rx_N PF18052.1 gi|289580938|ref|YP_003479404.1| - 0.19 12.0 3.6 1.5 9.1 1.4 2.2 2 0 0 2 2 2 0 Rx N-terminal domain EF-hand_7 PF13499.6 gi|289580938|ref|YP_003479404.1| - 0.3 11.6 3.1 0.37 11.3 1.6 1.9 2 0 0 2 2 2 0 EF-hand domain pair UvrA_inter PF17760.1 gi|289580939|ref|YP_003479405.1| - 1.5e-32 111.9 1.8 1.3e-31 108.9 0.0 3.1 3 0 0 3 3 3 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|289580939|ref|YP_003479405.1| - 4.8e-29 100.9 0.3 2.8e-26 92.0 0.1 3.7 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|289580939|ref|YP_003479405.1| - 1.4e-21 77.5 0.0 2.7e-11 44.1 0.0 3.9 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|289580939|ref|YP_003479405.1| - 2.6e-12 46.6 0.0 0.035 13.5 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289580939|ref|YP_003479405.1| - 3.2e-08 33.2 0.0 0.0032 17.2 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289580939|ref|YP_003479405.1| - 5.4e-07 30.1 0.0 0.019 15.4 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|289580939|ref|YP_003479405.1| - 2.7e-05 24.4 0.1 0.4 10.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|289580939|ref|YP_003479405.1| - 4.7e-05 23.7 8.5 0.0072 16.7 0.6 3.8 4 0 0 4 4 3 1 DnaJ central domain AAA_23 PF13476.6 gi|289580939|ref|YP_003479405.1| - 6.3e-05 23.6 0.1 0.13 12.8 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|289580939|ref|YP_003479405.1| - 0.00014 21.5 0.0 0.51 9.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|289580939|ref|YP_003479405.1| - 0.00014 21.7 0.3 0.17 11.5 0.0 4.3 4 1 0 4 4 4 1 AAA ATPase domain ATPase PF06745.13 gi|289580939|ref|YP_003479405.1| - 0.00017 21.0 0.1 0.15 11.4 0.0 3.0 3 0 0 3 3 3 1 KaiC RsgA_GTPase PF03193.16 gi|289580939|ref|YP_003479405.1| - 0.00021 21.3 0.0 0.69 9.8 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|289580939|ref|YP_003479405.1| - 0.00071 19.5 10.5 0.61 9.8 0.0 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|289580939|ref|YP_003479405.1| - 0.001 19.1 0.0 0.43 10.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|289580939|ref|YP_003479405.1| - 0.0012 18.5 0.1 0.15 11.6 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|289580939|ref|YP_003479405.1| - 0.0013 18.9 0.1 3.5 7.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|289580939|ref|YP_003479405.1| - 0.0024 18.4 0.0 3.1 8.4 0.0 3.1 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|289580939|ref|YP_003479405.1| - 0.0032 17.4 0.1 3.1 7.7 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase DUF2075 PF09848.9 gi|289580939|ref|YP_003479405.1| - 0.0046 16.3 0.0 2.7 7.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|289580939|ref|YP_003479405.1| - 0.0093 15.7 0.0 0.57 9.9 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|289580939|ref|YP_003479405.1| - 0.013 15.4 0.0 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 NACHT domain NMDAR2_C PF10565.9 gi|289580939|ref|YP_003479405.1| - 0.029 13.3 0.0 0.047 12.6 0.0 1.2 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Zn_Tnp_IS91 PF14319.6 gi|289580939|ref|YP_003479405.1| - 0.044 13.8 2.7 1.9 8.6 0.0 3.3 3 0 0 3 3 3 0 Transposase zinc-binding domain AAA_30 PF13604.6 gi|289580939|ref|YP_003479405.1| - 0.058 13.1 0.1 5.2 6.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|289580939|ref|YP_003479405.1| - 0.094 12.4 0.8 6.8 6.4 0.0 3.3 4 0 0 4 4 3 0 AAA domain RNA_helicase PF00910.22 gi|289580939|ref|YP_003479405.1| - 0.098 13.1 0.0 3.4 8.1 0.0 2.4 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|289580939|ref|YP_003479405.1| - 0.11 11.7 0.1 1.7 7.8 0.0 2.7 3 0 0 3 3 2 0 NB-ARC domain Zn-ribbon_8 PF09723.10 gi|289580939|ref|YP_003479405.1| - 0.11 12.6 15.6 5.6 7.2 1.1 4.6 4 0 0 4 4 4 0 Zinc ribbon domain MMR_HSR1 PF01926.23 gi|289580939|ref|YP_003479405.1| - 0.15 12.2 0.5 17 5.5 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase Anti-TRAP PF15777.5 gi|289580939|ref|YP_003479405.1| - 0.15 12.0 8.7 10 6.2 0.0 4.1 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|289580939|ref|YP_003479405.1| - 0.33 11.0 8.7 4.8 7.3 0.4 3.9 4 0 0 4 4 4 0 Double zinc ribbon YhfH PF14149.6 gi|289580939|ref|YP_003479405.1| - 6.1 6.9 10.6 6.7 6.8 0.0 4.0 3 1 1 4 4 4 0 YhfH-like protein PALP PF00291.25 gi|289580941|ref|YP_003479407.1| - 1.9e-61 208.0 0.1 2.4e-61 207.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_binding_7 PF13241.6 gi|289580941|ref|YP_003479407.1| - 0.15 12.5 0.1 22 5.6 0.1 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding Sortilin-Vps10 PF15902.5 gi|289580944|ref|YP_003479410.1| - 1.7e-18 66.7 0.0 2.4e-08 33.2 0.0 4.1 1 1 3 4 4 4 4 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|289580944|ref|YP_003479410.1| - 1.6e-08 33.3 21.7 0.42 10.8 1.4 6.6 6 0 0 6 6 6 5 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|289580944|ref|YP_003479410.1| - 4.3e-08 32.8 1.3 0.014 14.7 0.0 4.1 2 1 1 4 4 4 3 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.6 gi|289580944|ref|YP_003479410.1| - 0.00011 21.6 2.8 1.6 7.9 0.0 4.4 2 2 0 2 2 2 2 BNR repeat-like domain DUF4185 PF13810.6 gi|289580944|ref|YP_003479410.1| - 0.012 14.9 4.0 10 5.2 0.0 4.1 2 2 2 4 4 4 0 Domain of unknown function (DUF4185) GPDPase_memb PF10110.9 gi|289580945|ref|YP_003479411.1| - 0.00023 20.1 0.8 0.00034 19.5 0.8 1.2 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase Serglycin PF04360.12 gi|289580945|ref|YP_003479411.1| - 0.7 9.8 8.8 1.2 9.1 8.8 1.3 1 0 0 1 1 1 0 Serglycin PQQ_2 PF13360.6 gi|289580946|ref|YP_003479412.1| - 8.9e-46 156.4 21.6 9.3e-30 104.0 7.8 2.8 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289580946|ref|YP_003479412.1| - 4.5e-26 90.6 27.3 6.1e-07 29.7 0.0 7.9 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|289580946|ref|YP_003479412.1| - 2e-18 65.3 10.5 0.00018 21.3 0.0 7.3 7 0 0 7 7 7 4 PQQ enzyme repeat DUF4905 PF16248.5 gi|289580946|ref|YP_003479412.1| - 0.086 12.8 0.2 23 5.0 0.0 4.2 4 1 1 5 5 5 0 Domain of unknown function (DUF4905) Big_3_5 PF16640.5 gi|289580946|ref|YP_003479412.1| - 7.3 6.9 8.7 0.4 10.9 0.3 3.1 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) Ribosomal_S24e PF01282.19 gi|289580947|ref|YP_003479413.1| - 4.3e-26 90.7 0.3 5.4e-26 90.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|289580948|ref|YP_003479414.1| - 1e-10 41.6 3.1 1.1e-10 41.5 3.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|289580948|ref|YP_003479414.1| - 0.0011 18.8 0.7 0.0016 18.3 0.7 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|289580948|ref|YP_003479414.1| - 0.0073 16.4 0.7 0.0094 16.1 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e FYVE PF01363.21 gi|289580948|ref|YP_003479414.1| - 0.0081 16.3 0.6 0.0092 16.1 0.6 1.1 1 0 0 1 1 1 1 FYVE zinc finger TF_Zn_Ribbon PF08271.12 gi|289580948|ref|YP_003479414.1| - 0.022 14.3 2.2 0.041 13.4 2.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|289580948|ref|YP_003479414.1| - 0.04 13.3 5.6 0.15 11.5 5.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|289580948|ref|YP_003479414.1| - 0.11 12.4 1.2 0.13 12.2 1.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|289580948|ref|YP_003479414.1| - 0.19 11.7 6.4 5.5 7.0 5.5 2.1 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|289580948|ref|YP_003479414.1| - 0.22 11.5 3.5 8.7 6.4 3.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|289580948|ref|YP_003479414.1| - 0.68 9.3 6.8 0.075 12.4 0.9 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.6 gi|289580948|ref|YP_003479414.1| - 2.2 8.1 6.5 35 4.3 6.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M22 PF00814.25 gi|289580949|ref|YP_003479415.1| - 2.4e-75 253.7 0.0 3.2e-75 253.3 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|289580949|ref|YP_003479415.1| - 8.4e-07 29.1 4.9 0.00026 21.0 1.4 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|289580949|ref|YP_003479415.1| - 5.5e-05 22.6 0.0 0.0001 21.7 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|289580949|ref|YP_003479415.1| - 0.0009 18.9 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|289580949|ref|YP_003479415.1| - 0.051 12.9 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Peptidase_C15 PF01470.17 gi|289580950|ref|YP_003479416.1| - 5.8e-62 209.5 0.0 6.6e-62 209.3 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Pheromone PF08015.11 gi|289580951|ref|YP_003479417.1| - 0.084 13.9 0.0 0.38 11.8 0.0 1.9 2 0 0 2 2 2 0 Fungal mating-type pheromone Ham1p_like PF01725.16 gi|289580953|ref|YP_003479419.1| - 1.5e-50 171.7 0.0 1.8e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family PIN_3 PF13470.6 gi|289580954|ref|YP_003479420.1| - 0.0042 17.8 3.9 0.056 14.2 3.9 2.1 1 1 0 1 1 1 1 PIN domain MFS_MOT1 PF16983.5 gi|289580956|ref|YP_003479422.1| - 3.4e-41 140.1 33.4 1.3e-23 83.5 13.0 3.6 3 1 1 4 4 4 2 Molybdate transporter of MFS superfamily AIRS_C PF02769.22 gi|289580957|ref|YP_003479423.1| - 2.5e-25 89.4 2.8 3.6e-25 88.9 2.8 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|289580957|ref|YP_003479423.1| - 2.4e-07 31.3 0.3 2.4e-07 31.3 0.3 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF4350 PF14258.6 gi|289580957|ref|YP_003479423.1| - 0.12 12.8 2.4 0.77 10.2 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) YL1_C PF08265.11 gi|289580957|ref|YP_003479423.1| - 0.17 11.7 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain Phos_pyr_kin PF08543.12 gi|289580958|ref|YP_003479424.1| - 4.8e-85 284.9 7.1 7e-85 284.3 7.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|289580958|ref|YP_003479424.1| - 2e-55 186.9 1.3 8.5e-55 184.9 0.2 2.1 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|289580958|ref|YP_003479424.1| - 4.8e-10 39.2 4.0 7.6e-10 38.6 4.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|289580958|ref|YP_003479424.1| - 0.0017 17.9 4.9 0.003 17.1 4.9 1.4 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|289580958|ref|YP_003479424.1| - 0.01 15.2 2.2 0.17 11.3 2.2 2.3 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family tRNA_bind PF01588.20 gi|289580959|ref|YP_003479425.1| - 7.9e-13 48.3 0.0 9.6e-13 48.1 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain MutS_V PF00488.21 gi|289580960|ref|YP_003479426.1| - 1e-86 289.8 0.0 3.5e-86 288.0 0.0 2.0 3 0 0 3 3 3 1 MutS domain V MutS_III PF05192.18 gi|289580960|ref|YP_003479426.1| - 1.2e-35 123.5 4.5 2e-35 122.8 4.5 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|289580960|ref|YP_003479426.1| - 6.7e-27 94.0 0.0 1.6e-26 92.8 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|289580960|ref|YP_003479426.1| - 6.2e-25 87.4 1.0 1.3e-24 86.3 1.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|289580960|ref|YP_003479426.1| - 5.8e-22 78.5 0.0 2.1e-21 76.7 0.0 2.0 2 0 0 2 2 2 1 MutS domain II AAA_27 PF13514.6 gi|289580960|ref|YP_003479426.1| - 0.021 14.4 0.0 0.066 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289580960|ref|YP_003479426.1| - 0.081 13.4 1.0 4 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|289580960|ref|YP_003479426.1| - 0.13 12.5 0.7 2.3 8.5 0.0 3.1 4 0 0 4 4 4 0 AAA domain AAA_14 PF13173.6 gi|289580960|ref|YP_003479426.1| - 0.15 12.1 0.0 0.51 10.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289580960|ref|YP_003479426.1| - 0.18 11.5 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain adh_short_C2 PF13561.6 gi|289580961|ref|YP_003479427.1| - 7.5e-62 208.9 0.6 9e-62 208.7 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580961|ref|YP_003479427.1| - 5.2e-58 195.7 0.6 6.7e-58 195.4 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580961|ref|YP_003479427.1| - 4.6e-12 46.2 0.2 6.1e-12 45.8 0.2 1.2 1 0 0 1 1 1 1 KR domain THF_DHG_CYH_C PF02882.19 gi|289580961|ref|YP_003479427.1| - 0.00064 19.1 0.3 0.0023 17.3 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|289580961|ref|YP_003479427.1| - 0.0058 16.0 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|289580961|ref|YP_003479427.1| - 0.0084 15.6 0.1 0.092 12.2 0.1 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 gi|289580961|ref|YP_003479427.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Peptidase_M48 PF01435.18 gi|289580962|ref|YP_003479428.1| - 1.3e-29 103.4 0.0 2.7e-29 102.4 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289580962|ref|YP_003479428.1| - 0.0069 15.6 0.0 0.013 14.7 0.0 1.5 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4191 PF13829.6 gi|289580962|ref|YP_003479428.1| - 0.064 12.6 8.1 0.033 13.5 4.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) EI24 PF07264.11 gi|289580962|ref|YP_003479428.1| - 2.3 8.5 12.3 4.9 7.3 12.2 1.5 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) FA_desaturase PF00487.24 gi|289580962|ref|YP_003479428.1| - 4.6 7.0 10.2 2.6 7.8 3.9 2.2 2 0 0 2 2 2 0 Fatty acid desaturase DHDPS PF00701.22 gi|289580963|ref|YP_003479429.1| - 3.7e-64 216.2 0.0 5.4e-64 215.7 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family MutL_C PF08676.11 gi|289580965|ref|YP_003479431.1| - 2.2e-35 121.6 0.0 3.4e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|289580965|ref|YP_003479431.1| - 2.1e-31 108.1 0.0 3.2e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|289580965|ref|YP_003479431.1| - 4.5e-12 46.0 0.1 8.8e-12 45.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|289580965|ref|YP_003479431.1| - 3.6e-05 24.2 0.0 7.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MFS_1 PF07690.16 gi|289580966|ref|YP_003479432.1| - 4.1e-42 144.4 50.8 8.2e-28 97.3 29.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily RTC PF01137.21 gi|289580967|ref|YP_003479433.1| - 5.2e-68 228.6 0.0 6e-68 228.3 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|289580967|ref|YP_003479433.1| - 3.9e-09 37.0 1.1 8.7e-09 35.8 1.1 1.6 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PfkB PF00294.24 gi|289580968|ref|YP_003479434.1| - 8.6e-50 169.7 0.1 1.1e-49 169.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|289580968|ref|YP_003479434.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Acetyltransf_1 PF00583.25 gi|289580969|ref|YP_003479435.1| - 1.3e-10 41.5 0.0 2e-10 40.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289580969|ref|YP_003479435.1| - 2e-09 37.4 0.0 2.7e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289580969|ref|YP_003479435.1| - 7.8e-07 29.4 0.0 1.1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289580969|ref|YP_003479435.1| - 0.00029 20.7 0.0 0.00055 19.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Lumazine_bd_2 PF12893.7 gi|289580970|ref|YP_003479436.1| - 0.0029 18.3 1.4 0.043 14.5 1.4 2.1 1 1 0 1 1 1 1 Putative lumazine-binding HicB_lk_antitox PF15919.5 gi|289580970|ref|YP_003479436.1| - 0.02 15.0 0.5 0.04 14.0 0.1 1.7 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Erythro-docking PF09277.11 gi|289580970|ref|YP_003479436.1| - 0.032 14.1 0.2 0.076 12.9 0.2 1.6 1 0 0 1 1 1 0 Erythronolide synthase, docking DUF4829 PF16111.5 gi|289580970|ref|YP_003479436.1| - 0.098 13.5 0.0 0.13 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) DUF4510 PF14971.6 gi|289580970|ref|YP_003479436.1| - 0.15 12.4 0.1 0.3 11.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4510) RNB PF00773.19 gi|289580971|ref|YP_003479437.1| - 1.6e-80 270.9 0.0 3.3e-79 266.6 0.0 2.2 1 1 0 1 1 1 1 RNB domain HATPase_c PF02518.26 gi|289580972|ref|YP_003479438.1| - 2e-27 95.9 0.0 4.1e-27 94.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289580972|ref|YP_003479438.1| - 4.6e-13 49.0 0.7 1.7e-11 44.0 0.0 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|289580972|ref|YP_003479438.1| - 2.3e-06 27.5 0.0 5.7e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|289580972|ref|YP_003479438.1| - 0.002 18.1 0.1 0.0049 16.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|289580972|ref|YP_003479438.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase His_kinase PF06580.13 gi|289580972|ref|YP_003479438.1| - 0.082 13.2 0.6 0.49 10.8 0.4 2.3 2 0 0 2 2 2 0 Histidine kinase AIG1 PF04548.16 gi|289580972|ref|YP_003479438.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 AIG1 family ATPase PF06745.13 gi|289580973|ref|YP_003479439.1| - 8.7e-71 237.9 2.6 1.6e-37 129.1 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|289580973|ref|YP_003479439.1| - 1.7e-14 53.9 0.0 4.5e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|289580973|ref|YP_003479439.1| - 7.8e-10 39.2 0.3 0.00021 21.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|289580973|ref|YP_003479439.1| - 1.7e-09 37.4 0.0 0.00057 19.3 0.0 2.6 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|289580973|ref|YP_003479439.1| - 1e-08 35.8 0.0 0.00085 19.7 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain DUF2075 PF09848.9 gi|289580973|ref|YP_003479439.1| - 1.6e-08 34.2 0.2 0.0003 20.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) RecA PF00154.21 gi|289580973|ref|YP_003479439.1| - 7.8e-08 32.1 2.5 0.0026 17.3 0.0 2.9 2 1 0 2 2 2 2 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|289580973|ref|YP_003479439.1| - 3.6e-07 29.7 3.5 0.0026 17.1 1.1 2.9 2 1 0 2 2 2 2 Rad51 AAA PF00004.29 gi|289580973|ref|YP_003479439.1| - 1.2e-05 25.8 5.1 0.039 14.4 0.7 3.0 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|289580973|ref|YP_003479439.1| - 5.9e-05 23.1 0.1 0.046 13.7 0.0 2.4 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit PAXNEB PF05625.11 gi|289580973|ref|YP_003479439.1| - 6.2e-05 22.3 0.5 0.041 13.0 0.1 3.4 4 0 0 4 4 4 1 PAXNEB protein GvpD PF07088.11 gi|289580973|ref|YP_003479439.1| - 6.5e-05 21.7 0.5 0.0002 20.1 0.1 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein ATPase_2 PF01637.18 gi|289580973|ref|YP_003479439.1| - 8.1e-05 22.6 0.0 0.44 10.4 0.0 2.5 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|289580973|ref|YP_003479439.1| - 8.2e-05 22.4 0.2 0.4 10.4 0.0 3.6 2 2 1 4 4 4 1 AAA domain IstB_IS21 PF01695.17 gi|289580973|ref|YP_003479439.1| - 0.00045 20.0 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein NACHT PF05729.12 gi|289580973|ref|YP_003479439.1| - 0.00047 20.1 0.0 0.45 10.4 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_11 PF13086.6 gi|289580973|ref|YP_003479439.1| - 0.00071 19.4 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|289580973|ref|YP_003479439.1| - 0.00086 18.9 0.1 0.6 9.6 0.1 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|289580973|ref|YP_003479439.1| - 0.0013 18.1 0.0 0.91 8.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|289580973|ref|YP_003479439.1| - 0.0013 19.3 0.0 2.6 8.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|289580973|ref|YP_003479439.1| - 0.0015 18.2 0.1 0.64 9.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|289580973|ref|YP_003479439.1| - 0.0018 17.4 0.4 0.081 12.0 0.0 2.6 2 1 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|289580973|ref|YP_003479439.1| - 0.002 18.2 0.0 2.9 8.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|289580973|ref|YP_003479439.1| - 0.0026 17.8 0.7 2.3 8.2 0.0 2.9 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|289580973|ref|YP_003479439.1| - 0.0027 17.2 0.1 0.53 9.7 0.1 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_18 PF13238.6 gi|289580973|ref|YP_003479439.1| - 0.0043 17.6 0.0 6.5 7.3 0.0 2.8 2 1 0 2 2 2 0 AAA domain MEDS PF14417.6 gi|289580973|ref|YP_003479439.1| - 0.0063 16.4 0.1 0.84 9.5 0.0 2.4 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|289580973|ref|YP_003479439.1| - 0.011 16.1 2.1 3.9 7.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|289580973|ref|YP_003479439.1| - 0.013 15.1 0.1 0.9 9.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|289580973|ref|YP_003479439.1| - 0.014 15.8 0.0 7.6 7.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|289580973|ref|YP_003479439.1| - 0.023 15.2 0.7 0.14 12.6 0.5 2.2 2 0 0 2 2 2 0 AAA domain HEM4 PF02602.15 gi|289580973|ref|YP_003479439.1| - 0.032 13.6 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Zot PF05707.12 gi|289580973|ref|YP_003479439.1| - 0.05 13.2 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF835 PF05763.12 gi|289580973|ref|YP_003479439.1| - 0.057 13.1 0.2 0.22 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF835) AAA_33 PF13671.6 gi|289580973|ref|YP_003479439.1| - 0.06 13.5 0.8 8.9 6.5 0.0 2.9 2 1 1 3 3 3 0 AAA domain DUF4350 PF14258.6 gi|289580973|ref|YP_003479439.1| - 0.062 13.7 0.1 19 5.8 0.0 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4350) TrwB_AAD_bind PF10412.9 gi|289580973|ref|YP_003479439.1| - 0.12 11.3 0.1 0.39 9.6 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DAP3 PF10236.9 gi|289580973|ref|YP_003479439.1| - 0.15 11.2 0.1 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.29 gi|289580973|ref|YP_003479439.1| - 0.51 10.1 2.2 39 4.0 0.6 3.0 3 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_29 PF13555.6 gi|289580973|ref|YP_003479439.1| - 0.75 9.6 3.5 4.4 7.1 0.8 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Lactamase_B_2 PF12706.7 gi|289580974|ref|YP_003479440.1| - 1.4e-20 73.6 1.4 1.9e-20 73.2 1.4 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289580974|ref|YP_003479440.1| - 0.00012 22.2 2.7 0.00027 21.0 2.7 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.12 gi|289580974|ref|YP_003479440.1| - 0.2 11.6 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Mur ligase middle domain DUF3040 PF11239.8 gi|289580976|ref|YP_003479442.1| - 0.16 12.3 2.6 0.18 12.1 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3927 PF13064.6 gi|289580976|ref|YP_003479442.1| - 3.3 7.7 9.3 1.3 9.1 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3927) AAA PF00004.29 gi|289580977|ref|YP_003479443.1| - 4.5e-38 130.7 0.0 1.1e-37 129.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289580977|ref|YP_003479443.1| - 2.8e-09 36.7 0.2 7e-09 35.3 0.2 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|289580977|ref|YP_003479443.1| - 2.7e-05 24.2 0.0 0.00011 22.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|289580977|ref|YP_003479443.1| - 0.00024 21.5 1.5 0.011 16.2 1.5 3.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 gi|289580977|ref|YP_003479443.1| - 0.00029 21.0 0.8 0.00071 19.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|289580977|ref|YP_003479443.1| - 0.00038 21.0 0.3 0.0079 16.7 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|289580977|ref|YP_003479443.1| - 0.0004 20.7 1.2 0.19 12.0 0.0 3.1 2 1 1 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|289580977|ref|YP_003479443.1| - 0.00046 19.7 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|289580977|ref|YP_003479443.1| - 0.00087 19.1 0.0 0.0019 18.0 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|289580977|ref|YP_003479443.1| - 0.0014 18.9 0.5 0.0082 16.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|289580977|ref|YP_003479443.1| - 0.0027 17.3 1.0 0.024 14.2 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|289580977|ref|YP_003479443.1| - 0.0052 17.0 0.1 0.028 14.6 0.0 2.4 3 0 0 3 3 2 1 AAA domain FeoA PF04023.14 gi|289580977|ref|YP_003479443.1| - 0.01 16.1 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 FeoA domain TIP49 PF06068.13 gi|289580977|ref|YP_003479443.1| - 0.013 14.7 0.0 0.027 13.7 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|289580977|ref|YP_003479443.1| - 0.018 15.5 0.1 0.058 13.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|289580977|ref|YP_003479443.1| - 0.021 14.0 0.1 0.045 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|289580977|ref|YP_003479443.1| - 0.028 14.2 0.1 0.12 12.0 0.0 2.1 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_11 PF13086.6 gi|289580977|ref|YP_003479443.1| - 0.032 14.0 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|289580977|ref|YP_003479443.1| - 0.036 13.4 0.0 0.079 12.3 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI UreE_C PF05194.12 gi|289580977|ref|YP_003479443.1| - 0.041 14.4 5.1 0.11 13.1 5.1 1.8 1 0 0 1 1 1 0 UreE urease accessory protein, C-terminal domain RNA_helicase PF00910.22 gi|289580977|ref|YP_003479443.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|289580977|ref|YP_003479443.1| - 0.079 13.0 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_3 PF07726.11 gi|289580977|ref|YP_003479443.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|289580977|ref|YP_003479443.1| - 0.085 13.4 0.0 0.33 11.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter TniB PF05621.11 gi|289580977|ref|YP_003479443.1| - 0.14 11.6 0.0 11 5.3 0.0 2.4 1 1 0 2 2 2 0 Bacterial TniB protein Usp PF00582.26 gi|289580978|ref|YP_003479444.1| - 5.7e-13 49.6 0.0 2.1e-11 44.5 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|289580978|ref|YP_003479444.1| - 0.016 14.9 0.0 0.029 14.0 0.0 1.4 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain Acetyltransf_1 PF00583.25 gi|289580979|ref|YP_003479445.1| - 7e-19 68.2 0.0 8.7e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289580979|ref|YP_003479445.1| - 5.5e-11 42.5 0.0 9.5e-11 41.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289580979|ref|YP_003479445.1| - 1.3e-10 41.6 0.0 1.9e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289580979|ref|YP_003479445.1| - 1.4e-07 32.3 0.0 1.8e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289580979|ref|YP_003479445.1| - 2.3e-06 27.5 0.0 7.5e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|289580979|ref|YP_003479445.1| - 5.7e-05 23.2 0.0 0.00026 21.1 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289580979|ref|YP_003479445.1| - 0.0011 19.1 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|289580979|ref|YP_003479445.1| - 0.079 12.9 0.1 0.81 9.7 0.0 2.2 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 gi|289580979|ref|YP_003479445.1| - 0.088 12.5 0.0 0.11 12.1 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.26 gi|289580980|ref|YP_003479446.1| - 3.6e-14 53.5 3.0 6.4e-14 52.7 3.0 1.4 1 1 0 1 1 1 1 Universal stress protein family HTH_24 PF13412.6 gi|289580981|ref|YP_003479447.1| - 6.6e-09 35.2 0.0 3.4e-08 32.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|289580981|ref|YP_003479447.1| - 6.3e-08 32.5 0.2 1.2e-07 31.6 0.2 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|289580981|ref|YP_003479447.1| - 3.6e-06 26.9 0.0 9.8e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289580981|ref|YP_003479447.1| - 4.9e-06 26.3 0.0 8.7e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|289580981|ref|YP_003479447.1| - 2e-05 24.4 0.0 4.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289580981|ref|YP_003479447.1| - 0.00034 20.4 0.0 0.00063 19.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|289580981|ref|YP_003479447.1| - 0.00061 19.6 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|289580981|ref|YP_003479447.1| - 0.002 17.9 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|289580981|ref|YP_003479447.1| - 0.0025 17.9 0.1 0.0045 17.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.12 gi|289580981|ref|YP_003479447.1| - 0.0028 17.8 0.0 0.0046 17.1 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC GYD PF08734.11 gi|289580981|ref|YP_003479447.1| - 0.0067 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 GYD domain HTH_27 PF13463.6 gi|289580981|ref|YP_003479447.1| - 0.0085 16.6 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|289580981|ref|YP_003479447.1| - 0.012 15.5 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit GH97_N PF14508.6 gi|289580981|ref|YP_003479447.1| - 0.013 15.0 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 N-terminal DUF4423 PF14394.6 gi|289580981|ref|YP_003479447.1| - 0.04 13.6 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DprA_WH PF17782.1 gi|289580981|ref|YP_003479447.1| - 0.064 13.4 0.1 0.23 11.6 0.0 1.9 3 0 0 3 3 3 0 DprA winged helix domain TetR PF13972.6 gi|289580981|ref|YP_003479447.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial transcriptional repressor Usp PF00582.26 gi|289580982|ref|YP_003479448.1| - 2.5e-33 115.6 4.6 2.8e-33 115.4 4.6 1.0 1 0 0 1 1 1 1 Universal stress protein family adh_short_C2 PF13561.6 gi|289580983|ref|YP_003479449.1| - 2e-64 217.4 1.1 2.4e-64 217.1 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289580983|ref|YP_003479449.1| - 2.9e-53 180.2 0.4 4e-53 179.8 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289580983|ref|YP_003479449.1| - 1.3e-12 48.0 0.1 2.8e-12 46.9 0.1 1.5 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|289580983|ref|YP_003479449.1| - 2.8e-05 23.7 0.1 4.8e-05 22.9 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289580983|ref|YP_003479449.1| - 8.7e-05 21.7 0.4 0.00012 21.2 0.4 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|289580983|ref|YP_003479449.1| - 0.014 15.3 1.8 0.025 14.5 1.6 1.6 1 1 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|289580983|ref|YP_003479449.1| - 0.094 12.6 0.2 0.16 11.9 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|289580983|ref|YP_003479449.1| - 0.12 12.2 2.2 0.28 11.0 1.0 2.1 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein DHH PF01368.20 gi|289580984|ref|YP_003479450.1| - 0.041 14.1 0.9 0.076 13.3 0.9 1.4 1 0 0 1 1 1 0 DHH family DHHA1 PF02272.19 gi|289580984|ref|YP_003479450.1| - 0.048 14.1 1.2 0.15 12.5 0.3 2.3 2 1 0 2 2 2 0 DHHA1 domain DrsE PF02635.15 gi|289580984|ref|YP_003479450.1| - 0.16 12.3 0.0 0.35 11.2 0.0 1.6 1 0 0 1 1 1 0 DsrE/DsrF-like family DUF4064 PF13273.6 gi|289580985|ref|YP_003479451.1| - 0.11 12.7 8.4 0.11 12.8 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Bax1-I PF01027.20 gi|289580986|ref|YP_003479452.1| - 0.0086 15.9 22.8 0.018 14.9 22.8 1.5 1 1 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 GtrA PF04138.14 gi|289580986|ref|YP_003479452.1| - 0.66 10.2 17.9 3.3 8.0 13.5 2.5 2 1 0 2 2 2 0 GtrA-like protein DPM3 PF08285.11 gi|289580986|ref|YP_003479452.1| - 0.75 10.0 7.2 3.1 8.1 2.8 2.8 2 1 1 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) ABC2_membrane_5 PF13346.6 gi|289580986|ref|YP_003479452.1| - 1.9 8.0 21.9 0.098 12.2 7.2 2.3 3 0 0 3 3 3 0 ABC-2 family transporter protein Mrr_cat PF04471.12 gi|289580987|ref|YP_003479453.1| - 3.4e-26 91.5 0.0 6.5e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Zn_Tnp_IS91 PF14319.6 gi|289580987|ref|YP_003479453.1| - 0.02 14.9 2.2 0.05 13.6 2.2 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain SH3_17 PF18350.1 gi|289580987|ref|YP_003479453.1| - 0.25 11.3 0.5 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Restriction endonuclease SH3 domain Beta-Casp PF10996.8 gi|289580988|ref|YP_003479454.1| - 4.9e-12 46.1 0.0 9e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|289580988|ref|YP_003479454.1| - 4.8e-11 42.4 0.0 3.2e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|289580988|ref|YP_003479454.1| - 4.5e-09 36.6 9.7 8.2e-09 35.8 8.2 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289580988|ref|YP_003479454.1| - 8.9e-06 25.3 0.9 2e-05 24.2 0.9 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|289580988|ref|YP_003479454.1| - 0.0001 21.8 0.0 0.00026 20.5 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Rhodanese PF00581.20 gi|289580988|ref|YP_003479454.1| - 0.095 13.2 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Rhodanese-like domain DUF3110 PF11360.8 gi|289580988|ref|YP_003479454.1| - 0.11 12.8 0.1 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3110) TM2 PF05154.16 gi|289580989|ref|YP_003479455.1| - 0.019 15.3 1.4 0.038 14.3 1.4 1.5 1 0 0 1 1 1 0 TM2 domain DUF3017 PF11222.8 gi|289580989|ref|YP_003479455.1| - 0.073 13.3 1.6 0.073 13.3 1.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) TetR_C_6 PF13977.6 gi|289580991|ref|YP_003479457.1| - 7.1e-13 48.8 0.8 1.3e-12 48.0 0.8 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|289580991|ref|YP_003479457.1| - 1.9e-08 33.9 0.1 3.3e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 gi|289580991|ref|YP_003479457.1| - 6.9e-06 26.2 0.8 1.5e-05 25.1 0.5 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|289580991|ref|YP_003479457.1| - 8.3e-06 26.1 0.4 3.1e-05 24.2 0.0 2.2 2 1 1 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|289580991|ref|YP_003479457.1| - 0.0066 16.5 0.0 0.025 14.7 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|289580991|ref|YP_003479457.1| - 0.013 15.5 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Baculo_E56 PF04639.12 gi|289580991|ref|YP_003479457.1| - 0.027 13.7 0.7 0.046 13.0 0.7 1.3 1 0 0 1 1 1 0 Baculoviral E56 protein, specific to ODV envelope TetR_C_5 PF08360.11 gi|289580991|ref|YP_003479457.1| - 0.037 14.2 0.0 0.083 13.1 0.0 1.5 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Ribosomal_S6e PF01092.19 gi|289580993|ref|YP_003479459.1| - 1.5e-40 138.1 0.1 1.6e-40 137.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e PadR PF03551.14 gi|289580995|ref|YP_003479461.1| - 2.8e-09 36.8 0.1 4.9e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|289580995|ref|YP_003479461.1| - 0.027 15.1 0.0 0.04 14.5 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_IclR PF09339.10 gi|289580995|ref|YP_003479461.1| - 0.11 12.3 1.4 0.16 11.8 0.2 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Serglycin PF04360.12 gi|289580996|ref|YP_003479462.1| - 0.034 14.1 8.4 0.05 13.5 8.4 1.3 1 0 0 1 1 1 0 Serglycin SEEEED PF14797.6 gi|289580996|ref|YP_003479462.1| - 0.26 11.5 7.3 0.39 10.9 7.3 1.3 1 0 0 1 1 1 0 Serine-rich region of AP3B1, clathrin-adaptor complex DAO PF01266.24 gi|289580998|ref|YP_003479464.1| - 1.1e-43 150.3 1.0 1.2e-43 150.1 1.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289580998|ref|YP_003479464.1| - 0.0031 16.3 0.4 0.011 14.5 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|289580998|ref|YP_003479464.1| - 0.028 13.7 0.4 0.058 12.6 0.4 1.5 1 0 0 1 1 1 0 FAD binding domain TOBE_3 PF12857.7 gi|289580998|ref|YP_003479464.1| - 0.092 12.7 0.4 0.57 10.1 0.2 2.3 2 0 0 2 2 2 0 TOBE-like domain Pyr_redox_2 PF07992.14 gi|289580998|ref|YP_003479464.1| - 0.14 11.3 0.0 2.8 7.1 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF5305 PF17231.2 gi|289580999|ref|YP_003479465.1| - 3.9e-36 124.5 0.0 1.5e-35 122.6 0.0 1.9 2 0 0 2 2 2 1 Family of unknown function (DUF5305) OrfB_IS605 PF01385.19 gi|289581000|ref|YP_003479466.1| - 4.6e-25 88.2 0.0 1.1e-24 86.9 0.0 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289581000|ref|YP_003479466.1| - 9.6e-20 70.3 1.2 2.2e-19 69.2 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|289581000|ref|YP_003479466.1| - 0.001 19.4 1.0 0.0026 18.0 1.0 1.7 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|289581000|ref|YP_003479466.1| - 0.16 12.1 1.7 0.37 10.9 0.6 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family A2L_zn_ribbon PF08792.10 gi|289581000|ref|YP_003479466.1| - 0.28 11.0 2.9 0.69 9.7 2.9 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain Peptidase_S24 PF00717.23 gi|289581001|ref|YP_003479467.1| - 1.2e-08 34.8 0.1 3.3e-08 33.4 0.0 1.8 1 1 1 2 2 2 1 Peptidase S24-like PIRT PF15099.6 gi|289581001|ref|YP_003479467.1| - 0.056 13.0 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family FtsX PF02687.21 gi|289581001|ref|YP_003479467.1| - 0.097 13.1 2.0 1.5 9.3 0.0 2.2 2 0 0 2 2 2 0 FtsX-like permease family fn3_5 PF06280.12 gi|289581002|ref|YP_003479468.1| - 0.36 11.5 2.7 15 6.3 0.0 3.1 2 1 1 3 3 3 0 Fn3-like domain DUF1102 PF06510.11 gi|289581004|ref|YP_003479470.1| - 1e-05 25.8 0.1 2.1e-05 24.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1102) CytB6-F_Fe-S PF08802.10 gi|289581004|ref|YP_003479470.1| - 0.06 13.4 0.2 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit DUF1102 PF06510.11 gi|289581005|ref|YP_003479471.1| - 1.4e-08 35.0 1.6 2.4e-08 34.3 1.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) DUF4232 PF14016.6 gi|289581005|ref|YP_003479471.1| - 0.16 12.1 0.6 0.66 10.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4232) Pertactin PF03212.14 gi|289581007|ref|YP_003479473.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Pertactin Bac_luciferase PF00296.20 gi|289581009|ref|YP_003479475.1| - 2.6e-48 165.0 4.2 3.3e-48 164.7 4.2 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.21 gi|289581009|ref|YP_003479475.1| - 0.06 13.7 0.0 9.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Radical SAM superfamily Peptidase_M42 PF05343.14 gi|289581010|ref|YP_003479476.1| - 7.6e-79 264.8 0.1 8.8e-79 264.5 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|289581010|ref|YP_003479476.1| - 7e-08 32.4 0.1 1.4e-07 31.4 0.1 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|289581010|ref|YP_003479476.1| - 0.014 14.2 0.0 0.63 8.8 0.0 2.1 1 1 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) Aconitase PF00330.20 gi|289581011|ref|YP_003479477.1| - 5e-108 362.0 1.8 3.1e-106 356.2 1.8 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|289581011|ref|YP_003479477.1| - 1e-20 74.4 0.0 2e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|289581011|ref|YP_003479477.1| - 0.011 14.5 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) GNAT_like PF18407.1 gi|289581011|ref|YP_003479477.1| - 0.052 13.9 1.8 0.35 11.2 1.3 2.7 2 0 0 2 2 2 0 GCN5-related N-acetyltransferase like domain Barwin PF00967.17 gi|289581011|ref|YP_003479477.1| - 0.19 11.6 0.1 0.62 9.9 0.0 1.8 1 1 0 1 1 1 0 Barwin family dUTPase PF00692.19 gi|289581012|ref|YP_003479478.1| - 8.9e-12 44.8 0.0 1.3e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|289581012|ref|YP_003479478.1| - 0.0041 16.0 0.0 0.0041 16.0 0.0 1.1 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HalOD1 PF18545.1 gi|289581013|ref|YP_003479479.1| - 1.6e-19 69.9 0.8 2.5e-19 69.3 0.8 1.4 1 0 0 1 1 1 1 Halobacterial output domain 1 Glyco_hydro_65C PF03633.15 gi|289581013|ref|YP_003479479.1| - 0.057 13.3 0.0 0.19 11.6 0.0 1.9 2 1 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain NAD_binding_2 PF03446.15 gi|289581014|ref|YP_003479480.1| - 1.3e-37 129.5 0.0 1.7e-37 129.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|289581014|ref|YP_003479480.1| - 4.6e-24 85.3 0.0 6.7e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|289581014|ref|YP_003479480.1| - 2.3e-06 28.1 0.0 3.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|289581014|ref|YP_003479480.1| - 3.1e-05 24.2 0.2 5.7e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.18 gi|289581014|ref|YP_003479480.1| - 0.00012 22.0 0.1 0.00017 21.5 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289581014|ref|YP_003479480.1| - 0.00044 19.7 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 gi|289581014|ref|YP_003479480.1| - 0.00077 19.7 0.0 0.013 15.7 0.0 2.6 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_10 PF13460.6 gi|289581014|ref|YP_003479480.1| - 0.025 14.5 0.5 0.15 11.9 0.2 2.2 2 1 0 2 2 2 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|289581014|ref|YP_003479480.1| - 0.034 13.7 0.1 0.075 12.6 0.1 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.20 gi|289581014|ref|YP_003479480.1| - 0.088 12.9 1.5 0.23 11.6 1.5 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|289581014|ref|YP_003479480.1| - 0.1 12.8 0.9 1.2 9.4 0.9 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CopD PF05425.13 gi|289581016|ref|YP_003479482.1| - 1.3e-05 25.5 7.9 1.3e-05 25.5 7.9 1.7 2 0 0 2 2 2 1 Copper resistance protein D UPF0093 PF03653.13 gi|289581016|ref|YP_003479482.1| - 0.01 16.1 1.0 0.016 15.5 1.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0093) DUF2269 PF10027.9 gi|289581016|ref|YP_003479482.1| - 0.049 13.7 9.9 0.14 12.2 9.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) YdjM PF04307.14 gi|289581017|ref|YP_003479483.1| - 0.00024 20.4 15.7 0.0033 16.7 14.0 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DnaT PF17948.1 gi|289581018|ref|YP_003479484.1| - 0.13 12.0 0.3 2.6 7.8 0.0 2.3 2 0 0 2 2 2 0 DnaT DNA-binding domain DUF393 PF04134.12 gi|289581019|ref|YP_003479485.1| - 4.6e-11 44.1 0.1 5.5e-11 43.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 tRNA-synt_2c PF01411.19 gi|289581020|ref|YP_003479486.1| - 7.7e-13 47.8 0.0 1e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|289581020|ref|YP_003479486.1| - 8.5e-10 38.6 0.2 1.3e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TPR_21 PF09976.9 gi|289581020|ref|YP_003479486.1| - 0.13 11.9 0.5 0.57 9.9 0.1 2.0 2 1 0 2 2 2 0 Tetratricopeptide repeat-like domain Cupin_2 PF07883.11 gi|289581021|ref|YP_003479487.1| - 9.8e-07 28.4 1.8 0.002 17.8 1.1 2.5 2 0 0 2 2 2 2 Cupin domain TF_Zn_Ribbon PF08271.12 gi|289581021|ref|YP_003479487.1| - 1.3e-06 27.9 1.3 2.7e-06 26.8 1.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|289581021|ref|YP_003479487.1| - 0.00015 21.1 2.1 0.096 12.1 0.4 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|289581021|ref|YP_003479487.1| - 0.0002 20.9 1.0 0.62 9.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581021|ref|YP_003479487.1| - 0.0011 19.1 2.8 0.0033 17.5 2.8 1.8 1 1 0 1 1 1 1 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|289581021|ref|YP_003479487.1| - 0.0035 17.0 1.5 1.4 8.6 0.2 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|289581021|ref|YP_003479487.1| - 0.0045 17.2 3.4 0.76 10.1 0.5 2.6 1 1 1 2 2 2 2 zinc-ribbon DZR PF12773.7 gi|289581021|ref|YP_003479487.1| - 0.017 15.2 0.2 0.028 14.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|289581021|ref|YP_003479487.1| - 0.022 14.7 0.7 0.038 13.9 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|289581021|ref|YP_003479487.1| - 0.036 13.8 2.6 0.65 9.8 2.6 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF3797 PF12677.7 gi|289581021|ref|YP_003479487.1| - 0.048 13.6 1.4 0.51 10.3 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf_UBZ PF18439.1 gi|289581021|ref|YP_003479487.1| - 0.055 13.1 1.1 1.8 8.3 0.1 2.6 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C4_Topoisom PF01396.19 gi|289581021|ref|YP_003479487.1| - 0.07 12.9 2.0 5 7.0 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Cupin_3 PF05899.12 gi|289581021|ref|YP_003479487.1| - 0.095 12.4 0.6 0.22 11.3 0.4 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF861) UPF0547 PF10571.9 gi|289581021|ref|YP_003479487.1| - 0.11 12.6 7.6 1.5 9.0 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Anti-TRAP PF15777.5 gi|289581021|ref|YP_003479487.1| - 0.14 12.1 1.3 0.33 11.0 1.3 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein FdtA PF05523.11 gi|289581021|ref|YP_003479487.1| - 0.14 11.9 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 WxcM-like, C-terminal DNA_ligase_ZBD PF03119.16 gi|289581021|ref|YP_003479487.1| - 0.14 12.2 4.7 1.6 8.8 1.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.19 gi|289581021|ref|YP_003479487.1| - 0.15 12.1 0.6 0.34 10.9 0.5 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|289581021|ref|YP_003479487.1| - 0.16 11.9 0.2 18 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|289581021|ref|YP_003479487.1| - 0.2 12.1 5.6 4.5 7.7 0.6 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.12 gi|289581021|ref|YP_003479487.1| - 0.55 10.2 5.9 9.2 6.3 5.9 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.13 gi|289581021|ref|YP_003479487.1| - 1.2 8.9 2.6 18 5.1 0.2 2.4 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|289581021|ref|YP_003479487.1| - 2.1 8.4 4.5 25 5.0 0.4 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.16 gi|289581022|ref|YP_003479488.1| - 1.1e-35 123.2 34.4 1.1e-35 123.2 34.4 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|289581022|ref|YP_003479488.1| - 0.00013 20.4 1.8 0.11 10.8 0.0 3.1 2 1 0 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|289581022|ref|YP_003479488.1| - 0.00061 19.2 29.0 0.014 14.7 29.0 2.4 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB ATG22 PF11700.8 gi|289581022|ref|YP_003479488.1| - 0.0094 14.6 5.6 0.32 9.6 0.2 3.0 3 1 0 3 3 3 2 Vacuole effluxer Atg22 like Hydrolase PF00702.26 gi|289581023|ref|YP_003479489.1| - 3.3e-37 128.8 8.1 3.4e-37 128.8 3.2 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|289581023|ref|YP_003479489.1| - 1.1e-33 116.3 1.5 1.1e-33 116.3 1.5 1.8 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.26 gi|289581023|ref|YP_003479489.1| - 5.5e-08 33.1 0.0 1.2e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|289581023|ref|YP_003479489.1| - 0.00054 19.8 0.4 0.0039 17.0 0.3 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289581023|ref|YP_003479489.1| - 0.022 15.1 0.3 0.14 12.6 0.1 2.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase zf-FLZ PF04570.14 gi|289581023|ref|YP_003479489.1| - 0.5 9.9 2.0 16 5.1 0.5 2.4 2 0 0 2 2 2 0 zinc-finger of the FCS-type, C2-C2 ATPgrasp_Ter PF15632.6 gi|289581024|ref|YP_003479490.1| - 3e-06 27.0 0.0 5.3e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|289581024|ref|YP_003479490.1| - 0.00016 21.8 0.0 0.042 13.9 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|289581024|ref|YP_003479490.1| - 0.0012 18.4 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|289581024|ref|YP_003479490.1| - 0.027 15.0 0.0 0.05 14.1 0.0 1.4 1 0 0 1 1 1 0 Biotin carboxylase, N-terminal domain Acetyltransf_9 PF13527.7 gi|289581025|ref|YP_003479491.1| - 4.8e-16 59.0 0.0 5.7e-15 55.5 0.0 2.3 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|289581025|ref|YP_003479491.1| - 0.045 13.9 3.1 0.43 10.7 0.7 2.8 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289581025|ref|YP_003479491.1| - 0.06 13.6 0.0 0.62 10.3 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family PhdYeFM_antitox PF02604.19 gi|289581025|ref|YP_003479491.1| - 0.16 11.8 0.4 12 5.8 0.0 2.7 3 0 0 3 3 3 0 Antitoxin Phd_YefM, type II toxin-antitoxin system PSII_BNR PF14870.6 gi|289581026|ref|YP_003479492.1| - 6.6e-06 25.6 1.1 0.034 13.4 0.0 3.1 2 1 1 3 3 3 3 Photosynthesis system II assembly factor YCF48 Sulfatase PF00884.23 gi|289581027|ref|YP_003479493.1| - 5.9e-44 150.7 0.1 7.8e-44 150.3 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|289581027|ref|YP_003479493.1| - 5.6e-11 42.6 2.5 9.1e-10 38.6 2.5 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4994 PF16385.5 gi|289581027|ref|YP_003479493.1| - 0.014 15.3 0.0 0.13 12.2 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function Metalloenzyme PF01676.18 gi|289581027|ref|YP_003479493.1| - 0.036 13.4 0.0 0.76 9.1 0.0 2.2 2 0 0 2 2 2 0 Metalloenzyme superfamily Phosphoesterase PF04185.14 gi|289581027|ref|YP_003479493.1| - 0.045 12.9 0.1 0.71 9.0 0.1 2.1 2 0 0 2 2 2 0 Phosphoesterase family DUF1501 PF07394.12 gi|289581027|ref|YP_003479493.1| - 0.066 12.3 0.2 0.85 8.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DDE_Tnp_1 PF01609.21 gi|289581028|ref|YP_003479494.1| - 4.4e-11 42.8 0.0 5.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Mrr_cat PF04471.12 gi|289581028|ref|YP_003479494.1| - 0.02 14.9 0.1 0.063 13.3 0.0 1.8 2 0 0 2 2 2 0 Restriction endonuclease DDE_Tnp_1_4 PF13701.6 gi|289581028|ref|YP_003479494.1| - 0.064 11.5 0.1 0.23 9.7 0.1 1.8 1 1 0 1 1 1 0 Transposase DDE domain group 1 Ndr PF03096.14 gi|289581028|ref|YP_003479494.1| - 0.22 10.2 0.0 0.37 9.4 0.0 1.2 1 0 0 1 1 1 0 Ndr family Sulfatase PF00884.23 gi|289581029|ref|YP_003479495.1| - 3.1e-44 151.6 0.0 4.5e-44 151.1 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|289581029|ref|YP_003479495.1| - 2.3e-08 34.0 0.0 0.0039 16.8 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Collagen PF01391.18 gi|289581029|ref|YP_003479495.1| - 1.3e-06 28.0 27.6 0.0001 22.0 17.5 2.4 1 1 1 2 2 2 2 Collagen triple helix repeat (20 copies) DUF1501 PF07394.12 gi|289581029|ref|YP_003479495.1| - 0.004 16.3 0.1 0.01 14.9 0.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1501) DUF4994 PF16385.5 gi|289581029|ref|YP_003479495.1| - 0.073 13.0 0.5 0.96 9.4 0.5 2.3 1 1 0 1 1 1 0 Domain of unknown function Sulfatase_C PF14707.6 gi|289581029|ref|YP_003479495.1| - 0.098 13.4 0.0 0.23 12.2 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF4976 PF16347.5 gi|289581029|ref|YP_003479495.1| - 0.17 12.2 1.9 1.7 8.9 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4976) HTH_20 PF12840.7 gi|289581030|ref|YP_003479496.1| - 0.071 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain IU_nuc_hydro PF01156.19 gi|289581031|ref|YP_003479497.1| - 2.5e-80 270.3 0.9 2.8e-80 270.1 0.9 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase DUF2075 PF09848.9 gi|289581032|ref|YP_003479498.1| - 0.0029 16.9 0.0 0.0045 16.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF1737 PF08410.10 gi|289581032|ref|YP_003479498.1| - 0.016 15.0 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1737) TAT_signal PF10518.9 gi|289581032|ref|YP_003479498.1| - 0.21 11.5 7.0 0.64 10.0 7.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MerR-DNA-bind PF09278.11 gi|289581032|ref|YP_003479498.1| - 0.63 10.6 3.5 0.31 11.6 0.3 2.2 2 0 0 2 2 2 0 MerR, DNA binding PseudoU_synth_1 PF01416.20 gi|289581033|ref|YP_003479499.1| - 3e-15 56.6 0.0 1.6e-11 44.6 0.0 2.5 2 0 0 2 2 2 2 tRNA pseudouridine synthase TMEM43 PF07787.12 gi|289581034|ref|YP_003479500.1| - 1.3 8.3 3.4 1.5 8.2 3.4 1.0 1 0 0 1 1 1 0 Transmembrane protein 43 Peptidase_M28 PF04389.17 gi|289581035|ref|YP_003479501.1| - 3.4e-33 115.0 0.0 5.5e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|289581035|ref|YP_003479501.1| - 3.9e-13 49.2 0.1 7.4e-13 48.3 0.1 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|289581035|ref|YP_003479501.1| - 0.00071 19.3 1.5 0.0018 18.0 1.4 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|289581035|ref|YP_003479501.1| - 0.0048 16.0 0.2 0.0073 15.4 0.2 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M3 PF01432.20 gi|289581036|ref|YP_003479502.1| - 1.8e-63 215.4 2.4 1.8e-63 215.4 2.4 2.1 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|289581036|ref|YP_003479502.1| - 3.3e-21 75.3 0.2 3.3e-21 75.3 0.2 3.3 3 0 0 3 3 3 1 Oligopeptidase F DASH_Dad2 PF08654.10 gi|289581036|ref|YP_003479502.1| - 0.12 12.8 1.0 0.43 11.0 0.5 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad2 Reprolysin_3 PF13582.6 gi|289581036|ref|YP_003479502.1| - 0.14 12.7 0.2 0.53 10.8 0.0 2.0 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like RmuC PF02646.16 gi|289581036|ref|YP_003479502.1| - 0.19 10.8 6.5 0.31 10.2 0.0 2.7 3 0 0 3 3 3 0 RmuC family Sipho_Gp157 PF05565.11 gi|289581036|ref|YP_003479502.1| - 0.25 11.3 4.4 0.27 11.2 1.6 2.5 3 0 0 3 3 3 0 Siphovirus Gp157 MbeD_MobD PF04899.12 gi|289581036|ref|YP_003479502.1| - 8.9 6.5 12.6 25 5.1 0.4 4.3 3 1 1 4 4 4 0 MbeD/MobD like AAA PF00004.29 gi|289581037|ref|YP_003479503.1| - 3.5e-44 150.4 0.1 8.8e-44 149.1 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289581037|ref|YP_003479503.1| - 2.2e-14 53.0 0.4 5.7e-14 51.7 0.4 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|289581037|ref|YP_003479503.1| - 5e-08 33.2 0.0 1.4e-07 31.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|289581037|ref|YP_003479503.1| - 2.4e-06 27.4 0.1 9.2e-06 25.5 0.0 2.0 3 0 0 3 3 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|289581037|ref|YP_003479503.1| - 2.8e-06 27.4 0.3 1.6e-05 24.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|289581037|ref|YP_003479503.1| - 5.9e-06 26.6 1.1 0.00051 20.3 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|289581037|ref|YP_003479503.1| - 9.9e-06 26.0 3.6 0.00035 21.0 0.0 3.1 2 1 2 4 4 3 1 AAA ATPase domain Prot_ATP_ID_OB PF16450.5 gi|289581037|ref|YP_003479503.1| - 0.00019 21.3 1.9 0.00027 20.8 0.6 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain AAA_33 PF13671.6 gi|289581037|ref|YP_003479503.1| - 0.00078 19.6 0.7 0.0016 18.6 0.1 2.0 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.13 gi|289581037|ref|YP_003479503.1| - 0.00086 18.5 0.0 0.0016 17.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|289581037|ref|YP_003479503.1| - 0.001 19.1 0.0 0.0022 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|289581037|ref|YP_003479503.1| - 0.0011 18.2 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain NACHT PF05729.12 gi|289581037|ref|YP_003479503.1| - 0.0023 17.9 0.3 0.054 13.4 0.0 3.0 3 0 0 3 3 3 1 NACHT domain AAA_18 PF13238.6 gi|289581037|ref|YP_003479503.1| - 0.0029 18.1 0.1 0.022 15.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|289581037|ref|YP_003479503.1| - 0.003 17.0 0.0 0.0064 15.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ZapB PF06005.12 gi|289581037|ref|YP_003479503.1| - 0.0031 17.9 0.8 0.0031 17.9 0.8 2.3 3 0 0 3 3 1 1 Cell division protein ZapB Sigma54_activat PF00158.26 gi|289581037|ref|YP_003479503.1| - 0.0034 17.1 0.1 0.053 13.2 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_28 PF13521.6 gi|289581037|ref|YP_003479503.1| - 0.0047 17.2 6.0 0.007 16.6 0.1 2.9 3 1 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|289581037|ref|YP_003479503.1| - 0.0072 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.6 gi|289581037|ref|YP_003479503.1| - 0.0098 15.7 0.6 0.051 13.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain CPT PF07931.12 gi|289581037|ref|YP_003479503.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.6 gi|289581037|ref|YP_003479503.1| - 0.015 14.9 7.6 0.66 9.5 0.1 3.3 2 1 0 3 3 3 0 AAA domain Rootletin PF15035.6 gi|289581037|ref|YP_003479503.1| - 0.016 15.2 0.8 0.03 14.3 0.8 1.4 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TsaE PF02367.17 gi|289581037|ref|YP_003479503.1| - 0.017 15.1 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|289581037|ref|YP_003479503.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Prot_ATP_OB_N PF17758.1 gi|289581037|ref|YP_003479503.1| - 0.019 14.6 0.4 0.055 13.1 0.4 1.8 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain AAA_13 PF13166.6 gi|289581037|ref|YP_003479503.1| - 0.02 13.6 0.3 0.15 10.7 0.4 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|289581037|ref|YP_003479503.1| - 0.027 14.0 0.0 0.075 12.5 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region Taxilin PF09728.9 gi|289581037|ref|YP_003479503.1| - 0.031 13.4 0.4 0.054 12.7 0.4 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein NB-ARC PF00931.22 gi|289581037|ref|YP_003479503.1| - 0.032 13.4 0.0 0.072 12.3 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|289581037|ref|YP_003479503.1| - 0.036 14.5 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|289581037|ref|YP_003479503.1| - 0.041 13.8 0.3 0.13 12.1 0.0 2.1 2 0 0 2 2 1 0 NTPase AAA_30 PF13604.6 gi|289581037|ref|YP_003479503.1| - 0.047 13.4 0.3 0.13 12.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|289581037|ref|YP_003479503.1| - 0.051 13.7 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_17 PF13207.6 gi|289581037|ref|YP_003479503.1| - 0.058 13.8 0.3 0.058 13.8 0.3 2.6 2 2 0 2 2 2 0 AAA domain bZIP_1 PF00170.21 gi|289581037|ref|YP_003479503.1| - 0.059 13.5 1.6 0.75 9.9 0.2 2.5 1 1 1 2 2 2 0 bZIP transcription factor AAA_24 PF13479.6 gi|289581037|ref|YP_003479503.1| - 0.076 12.7 0.1 0.23 11.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 gi|289581037|ref|YP_003479503.1| - 0.076 13.3 2.0 0.17 12.2 0.3 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-Q PF13094.6 gi|289581037|ref|YP_003479503.1| - 0.1 12.8 5.4 0.8 9.9 4.6 2.2 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit TniB PF05621.11 gi|289581037|ref|YP_003479503.1| - 0.11 11.9 0.0 2.3 7.6 0.0 2.2 1 1 0 2 2 2 0 Bacterial TniB protein Troponin PF00992.20 gi|289581037|ref|YP_003479503.1| - 0.13 12.5 2.3 0.29 11.4 2.3 1.5 1 0 0 1 1 1 0 Troponin TSC22 PF01166.18 gi|289581037|ref|YP_003479503.1| - 0.15 12.4 4.4 3.2 8.2 0.2 3.1 2 1 1 3 3 2 0 TSC-22/dip/bun family Parvo_NS1 PF01057.17 gi|289581037|ref|YP_003479503.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 HupF_HypC PF01455.18 gi|289581037|ref|YP_003479503.1| - 0.17 12.1 0.5 0.44 10.7 0.5 1.7 1 0 0 1 1 1 0 HupF/HypC family YabA PF06156.13 gi|289581037|ref|YP_003479503.1| - 0.24 12.1 1.5 0.72 10.5 1.1 2.0 1 1 0 1 1 1 0 Initiation control protein YabA ABC_tran PF00005.27 gi|289581037|ref|YP_003479503.1| - 0.24 11.9 1.0 0.7 10.4 0.0 2.1 2 2 0 2 2 1 0 ABC transporter ATPase PF06745.13 gi|289581037|ref|YP_003479503.1| - 0.35 10.2 6.6 0.65 9.3 0.0 3.0 2 1 0 3 3 3 0 KaiC DNA_ligase_A_N PF04675.14 gi|289581037|ref|YP_003479503.1| - 0.35 11.2 1.5 4.3 7.6 0.1 2.8 3 0 0 3 3 3 0 DNA ligase N terminus TolA_bind_tri PF16331.5 gi|289581037|ref|YP_003479503.1| - 1.4 9.0 7.0 1.7 8.8 4.2 2.4 2 0 0 2 2 2 0 TolA binding protein trimerisation PvlArgDC PF01862.16 gi|289581038|ref|YP_003479504.1| - 3.6e-36 124.4 0.2 4.4e-36 124.1 0.2 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Nudix_N_2 PF14803.6 gi|289581040|ref|YP_003479506.1| - 0.16 11.9 2.7 0.57 10.2 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal ATP-synt_D PF01813.17 gi|289581041|ref|YP_003479507.1| - 2.2e-53 181.0 8.4 2.7e-53 180.7 8.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit D zinc_ribbon_13 PF09855.9 gi|289581042|ref|YP_003479508.1| - 2e-24 85.5 1.2 2e-24 85.5 1.2 1.4 2 0 0 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF2387 PF09526.10 gi|289581042|ref|YP_003479508.1| - 0.015 15.4 1.2 3.3 7.9 0.1 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-HYPF PF07503.12 gi|289581042|ref|YP_003479508.1| - 0.053 13.3 1.4 0.053 13.3 1.4 1.9 2 1 0 2 2 2 0 HypF finger DUF2225 PF09986.9 gi|289581042|ref|YP_003479508.1| - 0.094 12.4 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DNA_RNApol_7kD PF03604.13 gi|289581042|ref|YP_003479508.1| - 0.2 11.3 0.1 0.2 11.3 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.18 gi|289581042|ref|YP_003479508.1| - 1.9 8.4 5.2 17 5.3 0.2 2.6 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Cyt_c_ox_IV PF12270.8 gi|289581043|ref|YP_003479509.1| - 0.079 13.1 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV DUF4834 PF16118.5 gi|289581043|ref|YP_003479509.1| - 0.085 13.8 0.0 0.11 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) AMP-binding PF00501.28 gi|289581044|ref|YP_003479510.1| - 3.3e-96 322.5 0.2 3.8e-96 322.3 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289581044|ref|YP_003479510.1| - 7.2e-18 65.3 0.0 1.5e-17 64.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ATP-synt_ab PF00006.25 gi|289581045|ref|YP_003479511.1| - 2.1e-64 217.1 0.0 3e-64 216.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|289581045|ref|YP_003479511.1| - 2.6e-14 53.5 0.9 6.2e-14 52.3 0.9 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|289581045|ref|YP_003479511.1| - 0.012 15.7 2.6 0.016 15.3 0.6 2.4 3 1 0 3 3 3 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|289581046|ref|YP_003479512.1| - 1.6e-94 315.6 0.0 2.1e-94 315.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|289581046|ref|YP_003479512.1| - 1.4e-39 134.7 0.0 2.4e-39 133.9 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|289581046|ref|YP_003479512.1| - 2e-11 44.3 3.7 2e-11 44.3 3.7 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|289581046|ref|YP_003479512.1| - 0.019 15.2 0.0 0.047 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|289581046|ref|YP_003479512.1| - 0.039 14.2 0.1 3.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Peptidase family M23 RnfC_N PF13375.6 gi|289581046|ref|YP_003479512.1| - 0.093 12.7 0.3 8.9 6.3 0.0 2.5 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain MerR-DNA-bind PF09278.11 gi|289581046|ref|YP_003479512.1| - 0.24 12.0 0.5 0.7 10.5 0.0 2.0 2 0 0 2 2 2 0 MerR, DNA binding ATP-synt_F PF01990.17 gi|289581047|ref|YP_003479513.1| - 4.2e-17 62.3 0.1 5.2e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|289581048|ref|YP_003479514.1| - 6.1e-76 256.1 4.9 7e-76 255.9 4.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|289581049|ref|YP_003479515.1| - 5.1e-42 143.5 9.3 6.1e-42 143.3 9.3 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Apolipoprotein PF01442.18 gi|289581049|ref|YP_003479515.1| - 0.014 15.3 9.0 0.014 15.3 9.0 2.2 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain Merozoite_SPAM PF07133.11 gi|289581049|ref|YP_003479515.1| - 0.82 9.6 20.5 0.026 14.5 13.7 1.8 1 1 1 2 2 2 0 Merozoite surface protein (SPAM) DUF883 PF05957.13 gi|289581049|ref|YP_003479515.1| - 1.8 9.2 14.7 7.2 7.3 1.0 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) ATP-synt_B PF00430.18 gi|289581049|ref|YP_003479515.1| - 2.2 8.4 22.3 2.9 8.0 18.4 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|289581049|ref|YP_003479515.1| - 2.2 8.8 13.7 2.4 8.7 11.9 1.9 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit V-ATPase_G_2 PF16999.5 gi|289581049|ref|YP_003479515.1| - 4.3 7.8 21.7 3.9 7.9 20.1 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit ATP-synt_C PF00137.21 gi|289581050|ref|YP_003479516.1| - 4e-13 49.5 9.8 5.2e-13 49.1 9.8 1.2 1 0 0 1 1 1 1 ATP synthase subunit C TraT PF05818.12 gi|289581050|ref|YP_003479516.1| - 0.049 13.3 0.9 0.054 13.2 0.9 1.0 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF2892 PF11127.8 gi|289581050|ref|YP_003479516.1| - 4.1 7.5 8.9 0.66 10.0 4.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) V_ATPase_I PF01496.19 gi|289581051|ref|YP_003479517.1| - 9.6e-24 83.4 7.5 9.4e-14 50.3 0.5 4.0 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|289581051|ref|YP_003479517.1| - 0.0028 18.0 2.1 0.046 14.1 0.1 2.5 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|289581051|ref|YP_003479517.1| - 0.0068 16.8 4.6 2.3 8.7 1.6 2.7 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) Snapin_Pallidin PF14712.6 gi|289581051|ref|YP_003479517.1| - 0.0073 16.7 3.5 0.12 12.9 0.2 2.3 2 0 0 2 2 2 1 Snapin/Pallidin Spc24 PF08286.11 gi|289581051|ref|YP_003479517.1| - 0.01 16.0 2.8 0.089 13.0 0.1 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF1664 PF07889.12 gi|289581051|ref|YP_003479517.1| - 0.013 15.6 0.5 6.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.20 gi|289581051|ref|YP_003479517.1| - 0.016 15.2 7.5 0.35 10.8 0.7 2.4 2 0 0 2 2 2 0 Prefoldin subunit DUF3450 PF11932.8 gi|289581051|ref|YP_003479517.1| - 0.025 13.9 2.8 0.063 12.6 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.9 gi|289581051|ref|YP_003479517.1| - 0.087 13.0 6.4 0.42 10.8 1.7 2.7 2 0 0 2 2 2 0 Haemolysin XhlA MscS_porin PF12795.7 gi|289581051|ref|YP_003479517.1| - 0.09 12.3 3.9 0.038 13.5 1.1 1.7 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain CENP-F_leu_zip PF10473.9 gi|289581051|ref|YP_003479517.1| - 0.1 12.6 8.4 1.6 8.8 2.3 2.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 E2F_CC-MB PF16421.5 gi|289581051|ref|YP_003479517.1| - 0.11 12.9 1.2 0.45 10.9 0.0 2.2 2 0 0 2 2 2 0 E2F transcription factor CC-MB domain Nsp1_C PF05064.13 gi|289581051|ref|YP_003479517.1| - 1.1 9.1 4.3 15 5.4 0.2 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region APG6_N PF17675.1 gi|289581051|ref|YP_003479517.1| - 1.7 9.2 11.8 0.6 10.6 1.5 2.5 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF2802 PF10975.8 gi|289581051|ref|YP_003479517.1| - 1.8 8.8 4.4 2.1 8.5 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) Troponin PF00992.20 gi|289581051|ref|YP_003479517.1| - 7.6 6.8 9.1 7.6 6.8 1.3 2.2 2 0 0 2 2 2 0 Troponin V-ATPase_G_2 PF16999.5 gi|289581052|ref|YP_003479518.1| - 3.4e-06 27.4 19.5 4.8e-06 26.9 19.5 1.2 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 gi|289581052|ref|YP_003479518.1| - 0.00047 20.6 19.3 0.12 12.9 7.1 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit HrpE PF06188.12 gi|289581052|ref|YP_003479518.1| - 0.00074 19.4 10.3 0.00097 19.1 10.3 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.18 gi|289581052|ref|YP_003479518.1| - 0.0022 18.1 24.4 0.0031 17.6 23.8 1.5 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) vATP-synt_E PF01991.18 gi|289581052|ref|YP_003479518.1| - 0.0026 17.2 13.1 0.0026 17.2 13.1 2.2 1 1 1 2 2 2 1 ATP synthase (E/31 kDa) subunit dCache_2 PF08269.11 gi|289581052|ref|YP_003479518.1| - 0.023 13.9 2.4 0.035 13.3 2.4 1.3 1 0 0 1 1 1 0 Cache domain DivIVA PF05103.13 gi|289581052|ref|YP_003479518.1| - 0.023 14.8 15.2 0.68 10.0 1.6 2.1 1 1 1 2 2 2 0 DivIVA protein DUF3552 PF12072.8 gi|289581052|ref|YP_003479518.1| - 0.044 13.2 24.9 0.037 13.5 10.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF883 PF05957.13 gi|289581052|ref|YP_003479518.1| - 0.048 14.3 16.6 0.2 12.3 9.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) 7TMR-HDED PF07697.11 gi|289581052|ref|YP_003479518.1| - 0.096 12.8 8.0 0.12 12.5 8.0 1.1 1 0 0 1 1 1 0 7TM-HD extracellular PIN_8 PF18476.1 gi|289581052|ref|YP_003479518.1| - 0.18 11.6 5.7 0.21 11.4 5.7 1.1 1 0 0 1 1 1 0 PIN like domain DUF4407 PF14362.6 gi|289581052|ref|YP_003479518.1| - 0.21 10.9 9.6 0.24 10.7 9.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) YtxH PF12732.7 gi|289581052|ref|YP_003479518.1| - 0.37 11.4 8.0 15 6.2 8.0 2.3 1 1 0 1 1 1 0 YtxH-like protein DUF885 PF05960.11 gi|289581052|ref|YP_003479518.1| - 0.39 10.3 8.7 0.41 10.2 8.7 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) GBP_C PF02841.14 gi|289581052|ref|YP_003479518.1| - 0.48 9.8 12.8 0.54 9.6 12.8 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain CdvA PF18822.1 gi|289581052|ref|YP_003479518.1| - 0.54 10.1 13.2 0.29 11.0 1.0 2.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain LUC7 PF03194.15 gi|289581052|ref|YP_003479518.1| - 0.78 9.4 11.5 0.92 9.1 11.5 1.0 1 0 0 1 1 1 0 LUC7 N_terminus CDC45 PF02724.14 gi|289581052|ref|YP_003479518.1| - 0.9 7.8 10.9 0.92 7.7 10.9 1.0 1 0 0 1 1 1 0 CDC45-like protein Peptidase_M41 PF01434.18 gi|289581052|ref|YP_003479518.1| - 3.9 7.3 8.7 2.2 8.0 1.2 2.0 1 1 1 2 2 2 0 Peptidase family M41 RRN3 PF05327.11 gi|289581052|ref|YP_003479518.1| - 4.5 5.7 7.4 5.3 5.5 7.4 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 HSP70 PF00012.20 gi|289581052|ref|YP_003479518.1| - 4.7 5.3 11.4 5.6 5.0 11.4 1.0 1 0 0 1 1 1 0 Hsp70 protein Merozoite_SPAM PF07133.11 gi|289581052|ref|YP_003479518.1| - 6.6 6.7 19.7 8.2 6.4 19.7 1.1 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Methyltransf_11 PF08241.12 gi|289581053|ref|YP_003479519.1| - 8.7e-25 87.2 0.0 1.3e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289581053|ref|YP_003479519.1| - 1.2e-24 86.8 0.0 1.8e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289581053|ref|YP_003479519.1| - 1.1e-19 70.8 0.0 1.3e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289581053|ref|YP_003479519.1| - 1e-18 67.6 0.0 9.3e-15 54.6 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|289581053|ref|YP_003479519.1| - 1.2e-15 57.7 0.0 2.3e-15 56.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289581053|ref|YP_003479519.1| - 3.1e-15 56.7 0.0 4.6e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289581053|ref|YP_003479519.1| - 1.4e-07 31.5 0.0 1.8e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|289581053|ref|YP_003479519.1| - 2.6e-07 30.0 0.0 3.2e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|289581053|ref|YP_003479519.1| - 1.2e-05 24.5 0.0 1.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|289581053|ref|YP_003479519.1| - 9.2e-05 22.0 0.0 0.00036 20.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|289581053|ref|YP_003479519.1| - 0.0001 21.1 0.0 0.00012 20.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|289581053|ref|YP_003479519.1| - 0.00025 20.7 0.0 0.00033 20.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.12 gi|289581053|ref|YP_003479519.1| - 0.00099 18.3 0.0 0.0015 17.7 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_2 PF00891.18 gi|289581053|ref|YP_003479519.1| - 0.0015 17.9 0.0 0.0027 17.0 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|289581053|ref|YP_003479519.1| - 0.0035 16.7 0.0 0.0047 16.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.12 gi|289581053|ref|YP_003479519.1| - 0.013 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_33 PF10017.9 gi|289581053|ref|YP_003479519.1| - 0.02 14.1 0.0 0.049 12.8 0.0 1.6 2 0 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_32 PF13679.6 gi|289581053|ref|YP_003479519.1| - 0.026 14.5 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|289581053|ref|YP_003479519.1| - 0.026 14.6 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|289581053|ref|YP_003479519.1| - 0.027 14.3 0.0 0.17 11.7 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase NodS PF05401.11 gi|289581053|ref|YP_003479519.1| - 0.056 13.1 0.0 0.07 12.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) PrmA PF06325.13 gi|289581053|ref|YP_003479519.1| - 0.2 11.0 0.0 0.47 9.8 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|289581053|ref|YP_003479519.1| - 0.22 11.5 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|289581053|ref|YP_003479519.1| - 0.23 10.8 0.0 7.2 5.9 0.0 2.2 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G Pilin_N PF07790.11 gi|289581054|ref|YP_003479520.1| - 2.3e-13 50.8 0.1 3.9e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4714 PF15833.5 gi|289581054|ref|YP_003479520.1| - 0.0053 16.7 0.5 0.009 16.0 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4714) Heme_oxygenase PF01126.20 gi|289581055|ref|YP_003479521.1| - 0.0044 16.8 0.8 0.007 16.2 0.8 1.3 1 0 0 1 1 1 1 Heme oxygenase RICTOR_phospho PF14665.6 gi|289581055|ref|YP_003479521.1| - 0.033 14.5 1.0 1 9.7 0.1 2.3 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, phosphorylation-site HTH_IclR PF09339.10 gi|289581056|ref|YP_003479522.1| - 0.011 15.5 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MCR_beta_N PF02783.15 gi|289581056|ref|YP_003479522.1| - 0.16 11.6 0.4 22 4.6 0.0 2.8 3 0 0 3 3 3 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain HTH_24 PF13412.6 gi|289581056|ref|YP_003479522.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.21 gi|289581058|ref|YP_003479524.1| - 3.7e-05 24.2 3.1 0.0022 18.4 0.2 2.8 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|289581058|ref|YP_003479524.1| - 0.0012 18.9 0.1 0.0022 18.1 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF373 PF04123.13 gi|289581059|ref|YP_003479525.1| - 2.7e-119 398.5 7.8 3.4e-119 398.2 7.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|289581059|ref|YP_003479525.1| - 0.24 11.6 8.8 4.4 7.5 8.8 2.2 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) polyprenyl_synt PF00348.17 gi|289581060|ref|YP_003479526.1| - 9.9e-53 178.8 0.0 1.2e-52 178.5 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DinB_2 PF12867.7 gi|289581060|ref|YP_003479526.1| - 0.21 12.1 0.9 2 9.0 0.6 2.2 2 0 0 2 2 2 0 DinB superfamily MCPsignal PF00015.21 gi|289581061|ref|YP_003479527.1| - 4.8e-33 114.4 25.6 4.8e-33 114.4 25.6 4.8 3 2 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289581061|ref|YP_003479527.1| - 3.1e-14 53.1 9.5 1.1e-10 41.7 0.3 4.4 4 0 0 4 4 2 2 HAMP domain dCache_1 PF02743.18 gi|289581061|ref|YP_003479527.1| - 5.3e-09 36.2 0.9 5.3e-09 36.2 0.9 4.6 2 1 1 4 4 3 1 Cache domain DUF948 PF06103.11 gi|289581061|ref|YP_003479527.1| - 0.0016 18.7 46.6 0.0021 18.3 4.2 6.8 4 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) CLZ PF16526.5 gi|289581061|ref|YP_003479527.1| - 0.018 15.4 1.2 0.018 15.4 1.2 4.6 5 1 1 6 6 6 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PET10 PF17316.2 gi|289581061|ref|YP_003479527.1| - 0.02 14.5 2.1 0.048 13.2 2.1 1.6 1 0 0 1 1 1 0 Petite colonies protein 10 AsmA PF05170.14 gi|289581061|ref|YP_003479527.1| - 0.055 12.3 0.1 0.055 12.3 0.1 2.3 2 0 0 2 2 2 0 AsmA family DUF2958 PF11171.8 gi|289581061|ref|YP_003479527.1| - 0.086 13.1 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2958) Laminin_II PF06009.12 gi|289581061|ref|YP_003479527.1| - 0.13 12.3 46.5 0.15 12.1 5.5 5.9 3 2 2 5 5 5 0 Laminin Domain II UDPG_MGDP_dh PF00984.19 gi|289581061|ref|YP_003479527.1| - 0.18 12.0 1.4 3.6 7.9 0.1 3.1 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DUF1664 PF07889.12 gi|289581061|ref|YP_003479527.1| - 0.28 11.2 35.6 0.031 14.3 2.4 6.1 5 2 2 7 7 7 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|289581061|ref|YP_003479527.1| - 1 8.4 20.7 0.53 9.3 6.5 3.1 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 GM_CSF PF01109.17 gi|289581061|ref|YP_003479527.1| - 2.3 8.4 8.3 0.1 12.8 0.6 2.8 3 2 0 3 3 2 0 Granulocyte-macrophage colony-stimulating factor Syntaxin_2 PF14523.6 gi|289581061|ref|YP_003479527.1| - 4.8 7.6 16.4 62 4.0 4.6 5.4 1 1 2 4 4 4 0 Syntaxin-like protein BLOC1_2 PF10046.9 gi|289581061|ref|YP_003479527.1| - 5.9 7.3 35.2 0.29 11.4 2.7 5.9 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|289581061|ref|YP_003479527.1| - 6 6.7 24.4 0.99 9.3 3.3 5.0 2 2 3 5 5 5 0 Sec34-like family IFT57 PF10498.9 gi|289581061|ref|YP_003479527.1| - 6.5 5.6 33.1 2.1 7.2 9.9 4.0 3 2 0 3 3 3 0 Intra-flagellar transport protein 57 Peripla_BP_6 PF13458.6 gi|289581062|ref|YP_003479528.1| - 8.2e-34 117.8 8.9 1e-33 117.4 8.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|289581062|ref|YP_003479528.1| - 3.6e-22 79.0 0.0 4.2e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|289581062|ref|YP_003479528.1| - 8.7e-07 28.1 0.1 1.2e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|289581062|ref|YP_003479528.1| - 0.0044 16.0 0.0 0.68 8.8 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ETF_alpha PF00766.19 gi|289581063|ref|YP_003479529.1| - 1.9e-36 123.9 0.1 3.8e-36 123.0 0.1 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|289581063|ref|YP_003479529.1| - 7.7e-30 104.1 0.5 1.3e-29 103.4 0.5 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|289581064|ref|YP_003479530.1| - 3.6e-37 128.0 2.2 4.6e-37 127.7 2.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TRAM PF01938.20 gi|289581065|ref|YP_003479531.1| - 2e-07 30.9 0.3 2.9e-07 30.4 0.3 1.3 1 0 0 1 1 1 1 TRAM domain XRN_N PF03159.18 gi|289581065|ref|YP_003479531.1| - 0.061 12.7 0.0 0.073 12.5 0.0 1.1 1 0 0 1 1 1 0 XRN 5'-3' exonuclease N-terminus LKAAEAR PF15478.6 gi|289581065|ref|YP_003479531.1| - 0.074 13.3 0.6 0.12 12.7 0.4 1.4 1 1 0 1 1 1 0 Family of unknown function with LKAAEAR motif FYDLN_acid PF09538.10 gi|289581065|ref|YP_003479531.1| - 0.22 12.2 12.9 4.7 7.9 13.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) TFB6 PF17110.5 gi|289581065|ref|YP_003479531.1| - 0.23 11.2 2.2 0.29 10.8 2.2 1.2 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH CDC45 PF02724.14 gi|289581065|ref|YP_003479531.1| - 0.37 9.0 4.9 0.39 9.0 4.9 1.0 1 0 0 1 1 1 0 CDC45-like protein Sigma70_ner PF04546.13 gi|289581065|ref|YP_003479531.1| - 0.59 10.0 6.7 0.79 9.6 6.7 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Nop14 PF04147.12 gi|289581065|ref|YP_003479531.1| - 1.6 6.8 8.3 1.8 6.7 8.3 1.0 1 0 0 1 1 1 0 Nop14-like family DNA_pol_phi PF04931.13 gi|289581065|ref|YP_003479531.1| - 4.5 5.3 13.7 5.5 5.0 13.7 1.0 1 0 0 1 1 1 0 DNA polymerase phi TFX_C PF14601.6 gi|289581066|ref|YP_003479532.1| - 1e-29 102.3 0.1 1.5e-29 101.8 0.1 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|289581066|ref|YP_003479532.1| - 1.6e-07 30.8 0.1 3.1e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|289581066|ref|YP_003479532.1| - 0.00015 21.2 0.1 0.00025 20.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|289581066|ref|YP_003479532.1| - 0.0012 18.5 0.1 0.0025 17.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|289581066|ref|YP_003479532.1| - 0.0013 19.0 3.3 0.0026 18.1 3.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|289581066|ref|YP_003479532.1| - 0.0016 18.5 0.1 0.0031 17.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|289581066|ref|YP_003479532.1| - 0.0025 17.7 0.3 0.0063 16.4 0.3 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289581066|ref|YP_003479532.1| - 0.008 16.1 0.6 0.014 15.3 0.1 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|289581066|ref|YP_003479532.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|289581066|ref|YP_003479532.1| - 0.027 14.7 0.1 0.05 13.9 0.1 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor UPF0122 PF04297.14 gi|289581066|ref|YP_003479532.1| - 0.032 14.5 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_37 PF13744.6 gi|289581066|ref|YP_003479532.1| - 0.059 13.3 0.1 0.091 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|289581066|ref|YP_003479532.1| - 0.079 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 gi|289581066|ref|YP_003479532.1| - 0.099 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Trp_repressor PF01371.19 gi|289581066|ref|YP_003479532.1| - 0.1 12.8 0.4 0.16 12.1 0.4 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_38 PF13936.6 gi|289581066|ref|YP_003479532.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.20 gi|289581066|ref|YP_003479532.1| - 0.65 9.7 0.1 0.65 9.7 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family adh_short_C2 PF13561.6 gi|289581067|ref|YP_003479533.1| - 9.4e-47 159.5 0.0 1.5e-46 158.9 0.0 1.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289581067|ref|YP_003479533.1| - 5e-38 130.5 0.0 6.3e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289581067|ref|YP_003479533.1| - 2.9e-09 37.1 0.0 5.2e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.8 gi|289581067|ref|YP_003479533.1| - 0.13 12.1 0.4 0.26 11.1 0.4 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ThiF PF00899.21 gi|289581069|ref|YP_003479535.1| - 2.2e-68 230.2 0.0 2.9e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|289581069|ref|YP_003479535.1| - 0.01 16.1 1.2 0.045 14.0 1.2 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|289581069|ref|YP_003479535.1| - 0.038 14.0 0.1 0.078 13.0 0.1 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|289581069|ref|YP_003479535.1| - 0.18 12.5 0.1 0.28 11.8 0.1 1.4 1 0 0 1 1 1 0 PglD N-terminal domain DZR PF12773.7 gi|289581070|ref|YP_003479536.1| - 0.0045 17.0 0.2 0.0045 17.0 0.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289581070|ref|YP_003479536.1| - 0.23 11.6 2.5 0.83 9.8 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|289581071|ref|YP_003479537.1| - 0.0042 17.1 0.3 0.0059 16.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289581071|ref|YP_003479537.1| - 0.011 15.9 1.8 0.019 15.1 1.8 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|289581071|ref|YP_003479537.1| - 0.014 14.8 0.9 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|289581071|ref|YP_003479537.1| - 0.084 12.6 4.3 1.9 8.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|289581071|ref|YP_003479537.1| - 0.34 11.0 1.1 0.34 11.0 1.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RecR PF02132.15 gi|289581071|ref|YP_003479537.1| - 0.44 10.1 7.4 1.4 8.6 7.4 1.7 1 1 0 1 1 1 0 RecR protein A2L_zn_ribbon PF08792.10 gi|289581071|ref|YP_003479537.1| - 0.48 10.2 4.0 4.9 7.0 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain UvrD-helicase PF00580.21 gi|289581072|ref|YP_003479538.1| - 1.2e-25 90.7 0.1 9.2e-12 45.1 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|289581072|ref|YP_003479538.1| - 1.6e-24 86.9 0.0 5e-24 85.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|289581072|ref|YP_003479538.1| - 3.7e-14 52.9 0.1 4.9e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|289581072|ref|YP_003479538.1| - 3.9e-09 36.2 0.4 0.0045 16.8 0.0 2.9 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|289581072|ref|YP_003479538.1| - 5.6e-09 36.0 0.2 5.6e-05 22.9 0.0 3.0 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|289581072|ref|YP_003479538.1| - 3.9e-05 23.5 0.0 2.6 7.7 0.0 4.1 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.15 gi|289581072|ref|YP_003479538.1| - 0.00017 19.8 0.0 0.00028 19.1 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_22 PF13401.6 gi|289581072|ref|YP_003479538.1| - 0.00052 20.3 0.0 0.18 12.1 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.6 gi|289581072|ref|YP_003479538.1| - 0.00094 19.0 0.0 0.0023 17.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|289581072|ref|YP_003479538.1| - 0.0022 17.8 0.0 1.1 9.0 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|289581072|ref|YP_003479538.1| - 0.04 13.2 0.0 0.71 9.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|289581072|ref|YP_003479538.1| - 0.072 12.7 0.5 0.32 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|289581072|ref|YP_003479538.1| - 0.17 12.3 1.1 1.4 9.3 0.0 2.9 4 0 0 4 4 4 0 AAA ATPase domain Lum_binding PF00677.17 gi|289581078|ref|YP_003479544.1| - 3.9e-45 151.7 2.2 1.2e-21 76.5 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain PgaD PF13994.6 gi|289581079|ref|YP_003479545.1| - 0.97 9.5 8.5 1.6 8.8 8.5 1.5 1 1 0 1 1 1 0 PgaD-like protein PrsW-protease PF13367.6 gi|289581080|ref|YP_003479546.1| - 4.5e-41 140.5 17.9 4.5e-41 140.5 17.9 1.8 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease DUF402 PF04167.13 gi|289581083|ref|YP_003479549.1| - 2.6e-17 62.8 0.8 7.2e-17 61.3 0.8 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF402) SBF PF01758.16 gi|289581084|ref|YP_003479550.1| - 1e-38 133.0 16.3 1.9e-38 132.1 16.3 1.4 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|289581084|ref|YP_003479550.1| - 1.2e-13 51.1 17.6 1.6e-13 50.7 17.6 1.3 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|289581084|ref|YP_003479550.1| - 0.0026 16.2 3.9 0.0026 16.2 3.9 2.1 1 1 1 2 2 2 1 Membrane transport protein Aldo_ket_red PF00248.21 gi|289581085|ref|YP_003479551.1| - 1.3e-53 182.1 0.0 1.5e-53 181.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AP_endonuc_2 PF01261.24 gi|289581085|ref|YP_003479551.1| - 0.041 13.3 0.1 0.073 12.5 0.1 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Hexapep PF00132.24 gi|289581087|ref|YP_003479553.1| - 1.4e-05 24.6 5.8 0.51 10.1 0.3 3.8 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289581087|ref|YP_003479553.1| - 0.0043 16.8 6.0 0.66 9.8 0.4 2.9 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Axin_b-cat_bind PF08833.10 gi|289581088|ref|YP_003479554.1| - 0.018 15.2 0.8 0.034 14.3 0.8 1.5 1 0 0 1 1 1 0 Axin beta-catenin binding domain DNA_RNApol_7kD PF03604.13 gi|289581088|ref|YP_003479554.1| - 0.022 14.4 0.3 0.022 14.4 0.3 1.6 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|289581088|ref|YP_003479554.1| - 0.029 14.4 0.8 0.042 13.9 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289581088|ref|YP_003479554.1| - 0.064 13.0 4.1 0.33 10.7 4.2 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Orf78 PF06024.12 gi|289581088|ref|YP_003479554.1| - 0.16 12.3 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) zf-ribbon_3 PF13248.6 gi|289581088|ref|YP_003479554.1| - 0.49 9.9 3.5 2.8 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TraB PF01963.17 gi|289581089|ref|YP_003479555.1| - 0.0095 15.9 0.0 3.5 7.4 0.0 2.1 2 0 0 2 2 2 2 TraB family DUF3439 PF11921.8 gi|289581089|ref|YP_003479555.1| - 3.2 7.7 6.7 0.3 11.0 1.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3439) DUF2171 PF09939.9 gi|289581090|ref|YP_003479556.1| - 0.089 13.1 0.4 0.34 11.2 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) MarR PF01047.22 gi|289581091|ref|YP_003479557.1| - 0.00029 20.7 0.1 0.00089 19.1 0.1 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|289581091|ref|YP_003479557.1| - 0.00093 19.0 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289581091|ref|YP_003479557.1| - 0.00097 19.0 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|289581091|ref|YP_003479557.1| - 0.00099 19.0 0.1 0.0027 17.6 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|289581091|ref|YP_003479557.1| - 0.001 18.8 0.7 0.0027 17.5 0.3 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|289581091|ref|YP_003479557.1| - 0.0021 17.9 0.1 0.0072 16.3 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|289581091|ref|YP_003479557.1| - 0.0026 17.4 0.1 0.011 15.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|289581091|ref|YP_003479557.1| - 0.0028 17.6 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|289581091|ref|YP_003479557.1| - 0.003 18.0 0.1 0.0063 17.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|289581091|ref|YP_003479557.1| - 0.0044 16.9 0.6 0.022 14.7 0.4 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289581091|ref|YP_003479557.1| - 0.0056 16.7 1.5 0.035 14.2 0.7 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|289581091|ref|YP_003479557.1| - 0.034 13.9 1.0 0.13 12.1 0.6 2.1 1 1 1 2 2 2 0 Homeodomain-like domain Ribosomal_S19e PF01090.19 gi|289581091|ref|YP_003479557.1| - 0.051 13.3 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HxlR PF01638.17 gi|289581091|ref|YP_003479557.1| - 0.055 13.3 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_29 PF13551.6 gi|289581091|ref|YP_003479557.1| - 0.068 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|289581091|ref|YP_003479557.1| - 0.091 12.9 0.3 0.34 11.1 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289581091|ref|YP_003479557.1| - 0.17 11.9 1.5 0.27 11.2 0.6 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain eRF1_2 PF03464.15 gi|289581092|ref|YP_003479558.1| - 1.8e-43 148.0 0.0 3.6e-43 147.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|289581092|ref|YP_003479558.1| - 1.4e-30 106.1 0.5 3.9e-30 104.6 0.1 2.0 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|289581092|ref|YP_003479558.1| - 3.4e-18 66.2 0.5 1.1e-17 64.5 0.1 2.1 3 0 0 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|289581092|ref|YP_003479558.1| - 5.5e-15 55.9 0.1 3.4e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|289581092|ref|YP_003479558.1| - 3.7e-10 39.9 0.0 5.8e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.12 gi|289581092|ref|YP_003479558.1| - 0.03 13.9 2.4 0.088 12.3 2.4 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|289581092|ref|YP_003479558.1| - 0.046 13.8 3.5 0.059 13.5 2.0 1.9 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|289581092|ref|YP_003479558.1| - 0.11 12.4 2.2 0.27 11.2 2.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|289581092|ref|YP_003479558.1| - 0.18 11.8 0.9 0.36 10.9 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|289581092|ref|YP_003479558.1| - 0.71 9.6 2.9 6.9 6.4 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|289581092|ref|YP_003479558.1| - 0.9 9.2 3.2 3.5 7.3 0.2 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger ParA PF10609.9 gi|289581093|ref|YP_003479559.1| - 1.2e-21 77.3 1.9 1.3e-11 44.4 0.8 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|289581093|ref|YP_003479559.1| - 5.1e-21 75.4 0.0 7.5e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|289581093|ref|YP_003479559.1| - 4.5e-20 72.0 0.1 6.8e-20 71.4 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|289581093|ref|YP_003479559.1| - 6.3e-14 52.0 0.0 1.6e-13 50.7 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|289581093|ref|YP_003479559.1| - 6.5e-13 48.7 0.0 2.6e-12 46.8 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|289581093|ref|YP_003479559.1| - 4e-09 36.2 0.2 1.3e-08 34.5 0.2 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|289581093|ref|YP_003479559.1| - 1.2e-06 28.0 0.5 3.5e-05 23.2 2.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|289581093|ref|YP_003479559.1| - 8.7e-05 21.6 2.3 0.00038 19.5 2.3 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|289581093|ref|YP_003479559.1| - 0.00026 20.3 0.4 0.00057 19.3 0.4 1.4 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|289581093|ref|YP_003479559.1| - 0.00031 20.6 0.1 0.00046 20.0 0.1 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 gi|289581093|ref|YP_003479559.1| - 0.00047 20.0 0.9 0.018 14.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|289581093|ref|YP_003479559.1| - 0.014 15.1 0.3 0.021 14.6 0.3 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|289581093|ref|YP_003479559.1| - 0.033 13.8 1.4 0.068 12.8 1.2 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|289581093|ref|YP_003479559.1| - 0.038 13.6 0.3 0.11 12.1 0.3 1.7 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|289581093|ref|YP_003479559.1| - 0.044 12.0 0.6 0.066 11.4 0.6 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_24 PF13479.6 gi|289581093|ref|YP_003479559.1| - 0.045 13.5 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|289581093|ref|YP_003479559.1| - 0.07 12.4 0.5 0.16 11.2 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain LpxK PF02606.14 gi|289581093|ref|YP_003479559.1| - 0.33 10.0 1.4 0.96 8.5 0.6 1.8 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase TAT_signal PF10518.9 gi|289581094|ref|YP_003479560.1| - 0.1 12.5 1.3 0.18 11.7 1.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RAP1 PF07218.11 gi|289581094|ref|YP_003479560.1| - 4.1 5.6 8.2 4.4 5.5 8.2 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) BUD22 PF09073.10 gi|289581094|ref|YP_003479560.1| - 8 5.7 10.2 11 5.2 10.2 1.2 1 0 0 1 1 1 0 BUD22 tRNA-synt_1d PF00750.19 gi|289581095|ref|YP_003479561.1| - 8.5e-40 136.8 0.3 1.1e-39 136.4 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|289581095|ref|YP_003479561.1| - 6.5e-28 97.3 0.0 2.9e-27 95.2 0.0 2.1 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|289581095|ref|YP_003479561.1| - 6.4e-09 36.3 0.0 2.1e-08 34.6 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|289581095|ref|YP_003479561.1| - 0.0042 16.1 0.0 0.093 11.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|289581095|ref|YP_003479561.1| - 0.075 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain CSD PF00313.22 gi|289581096|ref|YP_003479562.1| - 1.3e-19 69.8 0.2 1.4e-19 69.6 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|289581096|ref|YP_003479562.1| - 0.045 13.4 2.5 0.06 13.0 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Peptidase_M10_C PF08548.11 gi|289581096|ref|YP_003479562.1| - 0.071 13.0 0.6 0.073 12.9 0.6 1.1 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal PRK PF00485.18 gi|289581097|ref|YP_003479563.1| - 1.4e-48 165.3 0.0 1.7e-48 164.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|289581097|ref|YP_003479563.1| - 5.1e-06 26.5 0.1 4.7e-05 23.3 0.1 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|289581097|ref|YP_003479563.1| - 0.00033 21.2 0.3 0.00082 19.9 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289581097|ref|YP_003479563.1| - 0.00067 19.9 0.0 0.0013 19.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain CoaE PF01121.20 gi|289581097|ref|YP_003479563.1| - 0.00088 19.0 0.4 0.024 14.3 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase Zeta_toxin PF06414.12 gi|289581097|ref|YP_003479563.1| - 0.00092 18.5 0.0 0.0023 17.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CPT PF07931.12 gi|289581097|ref|YP_003479563.1| - 0.0017 18.3 0.1 0.0067 16.3 0.0 1.9 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein AAA_26 PF13500.6 gi|289581097|ref|YP_003479563.1| - 0.0026 17.6 0.1 0.13 12.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|289581097|ref|YP_003479563.1| - 0.0079 16.4 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|289581097|ref|YP_003479563.1| - 0.016 14.3 0.3 0.1 11.7 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|289581097|ref|YP_003479563.1| - 0.029 14.5 0.0 0.051 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|289581097|ref|YP_003479563.1| - 0.032 14.7 0.0 0.04 14.4 0.0 1.4 1 1 0 1 1 1 0 ABC transporter T3SS_needle_reg PF09025.10 gi|289581097|ref|YP_003479563.1| - 0.045 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator DUF348 PF03990.14 gi|289581097|ref|YP_003479563.1| - 0.079 12.7 0.7 0.079 12.7 0.7 1.8 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Cytidylate_kin PF02224.18 gi|289581097|ref|YP_003479563.1| - 0.11 12.2 4.3 0.91 9.2 0.2 2.1 2 0 0 2 2 2 0 Cytidylate kinase AAA_17 PF13207.6 gi|289581097|ref|YP_003479563.1| - 0.12 12.8 3.8 2.1 8.8 0.2 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|289581097|ref|YP_003479563.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NUDIX PF00293.28 gi|289581098|ref|YP_003479564.1| - 1.7e-17 63.7 0.1 2.3e-17 63.3 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.6 gi|289581098|ref|YP_003479564.1| - 5.8e-06 26.1 2.3 1.2e-05 25.1 2.3 1.6 1 0 0 1 1 1 1 Nudix N-terminal zf-TFIIB PF13453.6 gi|289581098|ref|YP_003479564.1| - 0.0045 16.3 3.6 0.0088 15.3 3.6 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.7 gi|289581098|ref|YP_003479564.1| - 0.0087 16.1 1.9 0.015 15.3 1.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|289581098|ref|YP_003479564.1| - 0.04 13.8 0.5 0.076 12.9 0.5 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|289581098|ref|YP_003479564.1| - 0.059 13.1 1.7 1.2 8.9 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|289581098|ref|YP_003479564.1| - 0.066 13.2 1.6 0.066 13.2 1.6 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581098|ref|YP_003479564.1| - 0.38 10.9 4.2 1.5 9.0 3.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|289581098|ref|YP_003479564.1| - 1.3 9.2 4.0 22 5.3 0.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like IBR PF01485.21 gi|289581098|ref|YP_003479564.1| - 1.7 8.9 4.2 0.81 10.0 0.4 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain UPF0547 PF10571.9 gi|289581098|ref|YP_003479564.1| - 2.6 8.2 6.6 6.2 7.0 1.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.12 gi|289581098|ref|YP_003479564.1| - 2.9 8.1 4.4 1.1 9.4 1.4 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PALP PF00291.25 gi|289581099|ref|YP_003479565.1| - 7.2e-58 196.3 0.7 8.2e-58 196.1 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Capsid_VP7 PF17071.5 gi|289581099|ref|YP_003479565.1| - 0.18 11.1 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Outer capsid protein VP7 AstE_AspA PF04952.14 gi|289581100|ref|YP_003479566.1| - 2e-57 194.5 0.0 2.3e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family VKOR PF07884.14 gi|289581101|ref|YP_003479567.1| - 0.11 12.7 5.2 0.12 12.5 5.2 1.1 1 0 0 1 1 1 0 Vitamin K epoxide reductase family ECSCR PF15820.5 gi|289581101|ref|YP_003479567.1| - 0.15 11.9 1.3 0.13 12.1 0.6 1.3 1 1 0 1 1 1 0 Endothelial cell-specific chemotaxis regulator Gram_pos_anchor PF00746.21 gi|289581101|ref|YP_003479567.1| - 0.72 9.8 2.5 0.85 9.6 0.4 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Herpes_LMP1 PF05297.11 gi|289581101|ref|YP_003479567.1| - 1.7 7.7 3.9 1.8 7.7 3.9 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) SpoIIM PF01944.17 gi|289581102|ref|YP_003479568.1| - 1.5e-28 99.8 15.0 1.5e-28 99.8 15.0 3.9 3 1 1 4 4 4 1 Stage II sporulation protein M Phage_holin_3_6 PF07332.11 gi|289581103|ref|YP_003479569.1| - 0.0021 18.1 3.5 0.0022 18.0 3.5 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Aph-1 PF06105.12 gi|289581103|ref|YP_003479569.1| - 0.02 14.3 5.0 0.024 14.0 5.0 1.0 1 0 0 1 1 1 0 Aph-1 protein DUF2207 PF09972.9 gi|289581103|ref|YP_003479569.1| - 0.12 11.1 2.5 0.13 11.0 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Rhodanese PF00581.20 gi|289581104|ref|YP_003479570.1| - 7.2e-14 52.2 0.0 1.4e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|289581104|ref|YP_003479570.1| - 6e-11 42.7 3.0 1.3e-10 41.6 3.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289581104|ref|YP_003479570.1| - 0.019 14.5 0.2 0.046 13.2 0.2 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Phage_holin_3_3 PF16083.5 gi|289581105|ref|YP_003479571.1| - 0.076 13.1 2.2 0.088 12.9 2.2 1.1 1 0 0 1 1 1 0 LydA holin phage, holin superfamily III SnoaL_2 PF12680.7 gi|289581107|ref|YP_003479573.1| - 5.7e-14 52.6 1.6 6.9e-14 52.3 1.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|289581107|ref|YP_003479573.1| - 3.3e-06 27.4 0.4 4.6e-06 27.0 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|289581107|ref|YP_003479573.1| - 0.00034 20.7 0.2 0.001 19.2 0.1 1.7 1 1 1 2 2 2 1 SnoaL-like domain NTF2 PF02136.20 gi|289581107|ref|YP_003479573.1| - 0.00038 21.0 0.0 0.00049 20.7 0.0 1.0 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL PF07366.12 gi|289581107|ref|YP_003479573.1| - 0.0019 18.0 0.2 0.0036 17.1 0.1 1.4 2 0 0 2 2 2 1 SnoaL-like polyketide cyclase SnoaL_3 PF13474.6 gi|289581107|ref|YP_003479573.1| - 0.0066 16.7 0.0 0.0093 16.2 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.7 gi|289581107|ref|YP_003479573.1| - 0.046 14.4 0.1 0.13 13.0 0.0 1.6 2 0 0 2 2 2 0 Putative lumazine-binding DUF4829 PF16111.5 gi|289581107|ref|YP_003479573.1| - 0.087 13.6 0.0 0.1 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) Rieske PF00355.26 gi|289581108|ref|YP_003479574.1| - 1.8e-12 47.0 0.0 3.3e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|289581108|ref|YP_003479574.1| - 5.4e-09 35.9 0.0 1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain B12-binding_2 PF02607.17 gi|289581108|ref|YP_003479574.1| - 0.26 11.8 1.5 26 5.4 0.1 2.9 2 0 0 2 2 2 0 B12 binding domain ABC_tran PF00005.27 gi|289581109|ref|YP_003479575.1| - 6.4e-31 107.7 0.0 1.6e-30 106.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|289581109|ref|YP_003479575.1| - 8e-18 64.7 0.0 1.6e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289581109|ref|YP_003479575.1| - 0.0017 18.3 1.3 0.011 15.6 0.3 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|289581109|ref|YP_003479575.1| - 0.0038 16.6 1.2 0.097 12.0 0.1 2.8 3 0 0 3 3 3 1 KaiC SMC_N PF02463.19 gi|289581109|ref|YP_003479575.1| - 0.048 13.1 0.0 0.14 11.6 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|289581109|ref|YP_003479575.1| - 0.27 11.6 2.4 0.81 10.0 0.4 2.4 2 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|289581110|ref|YP_003479576.1| - 5.8e-27 94.9 0.0 8.9e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289581110|ref|YP_003479576.1| - 1.4e-19 70.3 0.1 3.1e-19 69.3 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289581110|ref|YP_003479576.1| - 1.7e-08 34.6 1.1 1.3e-05 25.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289581110|ref|YP_003479576.1| - 1.5e-06 27.8 0.1 3.3e-06 26.7 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|289581110|ref|YP_003479576.1| - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|289581110|ref|YP_003479576.1| - 0.0014 18.9 0.4 0.0066 16.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|289581110|ref|YP_003479576.1| - 0.0019 18.2 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.6 gi|289581110|ref|YP_003479576.1| - 0.0025 17.5 0.1 0.0049 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|289581110|ref|YP_003479576.1| - 0.0026 17.9 0.0 0.0059 16.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|289581110|ref|YP_003479576.1| - 0.003 18.0 0.0 0.017 15.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|289581110|ref|YP_003479576.1| - 0.003 16.8 0.6 0.012 14.8 0.1 2.0 2 1 0 2 2 2 1 NB-ARC domain ATP-synt_ab PF00006.25 gi|289581110|ref|YP_003479576.1| - 0.0036 17.0 0.0 0.0047 16.6 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ABC_ATPase PF09818.9 gi|289581110|ref|YP_003479576.1| - 0.0038 16.1 1.4 0.011 14.5 0.2 1.9 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|289581110|ref|YP_003479576.1| - 0.0039 17.6 1.2 0.0056 17.1 0.2 2.0 2 1 0 2 2 1 1 AAA ATPase domain MobB PF03205.14 gi|289581110|ref|YP_003479576.1| - 0.0089 15.9 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.21 gi|289581110|ref|YP_003479576.1| - 0.0095 15.3 0.0 0.022 14.2 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|289581110|ref|YP_003479576.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|289581110|ref|YP_003479576.1| - 0.024 14.7 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|289581110|ref|YP_003479576.1| - 0.03 14.0 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|289581110|ref|YP_003479576.1| - 0.034 14.0 0.1 0.071 13.0 0.1 1.5 1 0 0 1 1 1 0 NTPase Roc PF08477.13 gi|289581110|ref|YP_003479576.1| - 0.044 14.0 0.0 0.077 13.2 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Thymidylate_kin PF02223.17 gi|289581110|ref|YP_003479576.1| - 0.058 13.1 0.0 0.46 10.1 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase DUF87 PF01935.17 gi|289581110|ref|YP_003479576.1| - 0.07 13.2 0.3 0.17 11.9 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain APS_kinase PF01583.20 gi|289581110|ref|YP_003479576.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PRK PF00485.18 gi|289581110|ref|YP_003479576.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KAP_NTPase PF07693.14 gi|289581110|ref|YP_003479576.1| - 0.13 11.4 0.0 0.21 10.8 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain Sigma54_activat PF00158.26 gi|289581110|ref|YP_003479576.1| - 0.14 11.9 0.1 0.33 10.6 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_15 PF13175.6 gi|289581110|ref|YP_003479576.1| - 0.17 11.6 0.1 0.31 10.7 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain G-alpha PF00503.20 gi|289581110|ref|YP_003479576.1| - 0.17 11.0 0.0 0.42 9.7 0.0 1.8 1 1 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|289581110|ref|YP_003479576.1| - 0.18 11.7 0.1 0.39 10.6 0.0 1.5 2 0 0 2 2 1 0 RsgA GTPase RNA_helicase PF00910.22 gi|289581110|ref|YP_003479576.1| - 0.21 12.0 0.0 0.42 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|289581111|ref|YP_003479577.1| - 5.1e-26 91.5 16.1 5.1e-26 91.5 16.1 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0126 PF03458.13 gi|289581111|ref|YP_003479577.1| - 4.4 7.3 15.4 2.3 8.1 9.5 2.6 2 0 0 2 2 2 0 UPF0126 domain BPD_transp_1 PF00528.22 gi|289581112|ref|YP_003479578.1| - 1.1e-37 129.6 8.8 1.1e-37 129.6 8.8 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|289581113|ref|YP_003479579.1| - 5.9e-61 206.5 0.3 4.2e-53 180.7 0.2 2.5 3 0 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|289581113|ref|YP_003479579.1| - 0.069 13.0 2.3 0.13 12.1 2.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Med5 PF08689.10 gi|289581113|ref|YP_003479579.1| - 0.14 10.0 0.0 0.19 9.5 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit Med5 Ribo_biogen_C PF04034.13 gi|289581114|ref|YP_003479580.1| - 5.2e-45 152.3 0.0 6.6e-45 151.9 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|289581114|ref|YP_003479580.1| - 4.3e-07 29.6 0.1 6.4e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ribosomal_L40e PF01020.17 gi|289581115|ref|YP_003479581.1| - 2.6e-07 30.4 5.0 2.8e-07 30.3 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|289581115|ref|YP_003479581.1| - 0.00011 21.8 1.7 0.00014 21.4 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|289581115|ref|YP_003479581.1| - 0.00032 20.3 4.8 0.00047 19.8 4.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|289581115|ref|YP_003479581.1| - 0.0009 19.2 1.0 0.00095 19.1 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|289581115|ref|YP_003479581.1| - 0.0029 17.7 2.0 0.0037 17.4 2.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zf-CHY PF05495.12 gi|289581115|ref|YP_003479581.1| - 0.0046 17.4 1.0 0.0047 17.4 1.0 1.1 1 0 0 1 1 1 1 CHY zinc finger zf-ribbon_3 PF13248.6 gi|289581115|ref|YP_003479581.1| - 0.0088 15.4 1.3 0.012 15.0 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|289581115|ref|YP_003479581.1| - 0.068 13.2 1.5 0.077 13.0 1.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|289581115|ref|YP_003479581.1| - 0.095 12.0 5.4 0.23 10.8 5.4 1.7 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others TM_helix PF05552.12 gi|289581116|ref|YP_003479582.1| - 5.9e-08 32.6 0.5 0.013 15.5 0.4 2.8 2 0 0 2 2 2 2 Conserved TM helix Saf_2TM PF18303.1 gi|289581116|ref|YP_003479582.1| - 0.19 11.3 1.2 0.93 9.1 0.5 2.2 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain FtsX PF02687.21 gi|289581116|ref|YP_003479582.1| - 0.65 10.5 19.0 5.2 7.6 14.5 3.3 2 1 1 3 3 3 0 FtsX-like permease family Lactamase_B PF00753.27 gi|289581117|ref|YP_003479583.1| - 1.3e-14 54.7 12.8 2.5e-11 43.9 3.9 2.2 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289581117|ref|YP_003479583.1| - 9.8e-06 25.2 6.3 8e-05 22.2 6.1 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Poly_export PF02563.16 gi|289581117|ref|YP_003479583.1| - 0.0023 18.1 0.0 0.0042 17.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis/export protein Lactamase_B_6 PF16661.5 gi|289581117|ref|YP_003479583.1| - 0.011 15.2 0.1 0.025 14.0 0.1 1.5 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|289581117|ref|YP_003479583.1| - 0.07 13.0 4.3 0.55 10.1 1.1 2.1 1 1 1 2 2 2 0 Beta-lactamase superfamily domain DUF99 PF01949.16 gi|289581119|ref|YP_003479585.1| - 5.1e-59 198.7 0.3 2.8e-57 193.1 0.1 2.0 2 0 0 2 2 2 2 Protein of unknown function DUF99 DUF192 PF02643.15 gi|289581120|ref|YP_003479586.1| - 4.2e-07 30.0 0.0 5.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HATPase_c_2 PF13581.6 gi|289581120|ref|YP_003479586.1| - 0.096 12.6 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Peptidase_M3 PF01432.20 gi|289581121|ref|YP_003479587.1| - 3.9e-22 79.1 0.0 9.6e-22 77.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|289581121|ref|YP_003479587.1| - 1.2e-06 28.7 0.1 4.3e-05 23.7 0.0 2.7 2 0 0 2 2 2 1 Oligopeptidase F T2SSM_b PF10741.9 gi|289581121|ref|YP_003479587.1| - 0.036 13.9 2.3 0.19 11.6 0.1 3.0 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein M subtype b Apolipoprotein PF01442.18 gi|289581121|ref|YP_003479587.1| - 0.15 11.9 9.0 0.54 10.1 4.3 3.1 1 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF1059 PF06348.11 gi|289581121|ref|YP_003479587.1| - 0.21 11.9 0.2 0.21 11.9 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1059) UDG PF03167.19 gi|289581122|ref|YP_003479588.1| - 3.1e-37 128.0 0.0 3.7e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Epimerase_2 PF02350.19 gi|289581122|ref|YP_003479588.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase SnoaL_2 PF12680.7 gi|289581123|ref|YP_003479589.1| - 1.5e-17 64.1 2.8 1.9e-17 63.8 2.8 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|289581123|ref|YP_003479589.1| - 3.8e-10 40.0 0.6 4.6e-10 39.7 0.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|289581123|ref|YP_003479589.1| - 2.1e-07 30.8 0.7 3.7e-07 30.0 0.7 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.20 gi|289581123|ref|YP_003479589.1| - 4.5e-07 30.5 0.0 5.3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.6 gi|289581123|ref|YP_003479589.1| - 0.00053 20.4 0.3 0.00071 19.9 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DDE_3 PF13358.6 gi|289581125|ref|YP_003479591.1| - 5.4e-35 120.3 0.0 1.6e-34 118.7 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|289581125|ref|YP_003479591.1| - 1.3e-17 63.1 0.4 2.5e-17 62.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.6 gi|289581125|ref|YP_003479591.1| - 1e-10 42.1 0.1 3.3e-10 40.4 0.1 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|289581125|ref|YP_003479591.1| - 1.9e-09 37.4 0.3 6.5e-09 35.7 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|289581125|ref|YP_003479591.1| - 2e-09 37.4 0.2 4.8e-09 36.2 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.11 gi|289581125|ref|YP_003479591.1| - 2.5e-06 26.7 0.0 0.00042 19.4 0.0 2.2 2 0 0 2 2 2 2 Rhodopirellula transposase DDE domain HTH_23 PF13384.6 gi|289581125|ref|YP_003479591.1| - 0.0012 18.5 0.0 0.0028 17.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.18 gi|289581125|ref|YP_003479591.1| - 0.025 14.8 0.0 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 Transposase HTH_Tnp_IS630 PF01710.16 gi|289581125|ref|YP_003479591.1| - 0.058 13.4 0.4 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 Transposase Mem_trans PF03547.18 gi|289581126|ref|YP_003479592.1| - 0.33 9.3 1.1 0.36 9.2 1.1 1.2 1 0 0 1 1 1 0 Membrane transport protein GATase PF00117.28 gi|289581127|ref|YP_003479593.1| - 5.2e-23 81.8 0.0 6.6e-23 81.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|289581127|ref|YP_003479593.1| - 1.1e-07 31.7 0.0 1.9e-07 30.9 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|289581127|ref|YP_003479593.1| - 7.2e-06 26.0 0.0 0.031 14.1 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|289581127|ref|YP_003479593.1| - 0.00016 21.5 0.0 0.0091 15.8 0.0 2.3 2 0 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|289581127|ref|YP_003479593.1| - 0.003 17.4 0.0 0.0044 16.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase1_like PF07090.11 gi|289581127|ref|YP_003479593.1| - 0.14 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative glutamine amidotransferase SWIM PF04434.17 gi|289581129|ref|YP_003479595.1| - 0.0014 18.3 3.3 0.007 16.0 3.3 1.9 1 1 0 1 1 1 1 SWIM zinc finger TRM PF02005.16 gi|289581130|ref|YP_003479596.1| - 8.4e-92 308.2 0.0 9.4e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|289581130|ref|YP_003479596.1| - 4.6e-05 23.0 0.0 7.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|289581130|ref|YP_003479596.1| - 0.00039 19.9 0.1 0.00063 19.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|289581130|ref|YP_003479596.1| - 0.0027 18.3 0.2 0.0085 16.8 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|289581130|ref|YP_003479596.1| - 0.039 13.6 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|289581130|ref|YP_003479596.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|289581130|ref|YP_003479596.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Virul_fac_BrkB PF03631.15 gi|289581131|ref|YP_003479597.1| - 8.4e-44 150.1 26.3 8.4e-44 150.1 26.3 2.0 2 0 0 2 2 2 1 Virulence factor BrkB MAD PF05557.13 gi|289581131|ref|YP_003479597.1| - 0.059 11.7 1.4 0.082 11.3 1.4 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein SPX PF03105.19 gi|289581131|ref|YP_003479597.1| - 0.065 13.1 8.4 0.091 12.7 8.4 1.1 1 0 0 1 1 1 0 SPX domain Vir_act_alpha_C PF10400.9 gi|289581131|ref|YP_003479597.1| - 0.12 13.0 0.4 0.3 11.8 0.4 1.6 1 0 0 1 1 1 0 Virulence activator alpha C-term Herpes_DNAp_acc PF04929.12 gi|289581131|ref|YP_003479597.1| - 0.43 9.5 2.4 0.54 9.2 2.4 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor Atg14 PF10186.9 gi|289581131|ref|YP_003479597.1| - 0.58 9.2 1.6 0.83 8.7 1.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2207 PF09972.9 gi|289581131|ref|YP_003479597.1| - 1.8 7.3 0.0 1.8 7.3 0.0 3.0 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) CDC45 PF02724.14 gi|289581131|ref|YP_003479597.1| - 4.8 5.4 8.1 7.1 4.8 8.1 1.2 1 0 0 1 1 1 0 CDC45-like protein PAP2 PF01569.21 gi|289581132|ref|YP_003479598.1| - 1.8e-18 66.6 3.1 1.8e-18 66.6 3.1 3.0 1 1 2 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|289581132|ref|YP_003479598.1| - 6.6e-09 35.7 11.5 6.6e-09 35.7 11.5 2.5 1 1 2 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|289581132|ref|YP_003479598.1| - 0.076 13.6 0.8 0.31 11.6 0.8 2.1 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Gln-synt_C PF00120.24 gi|289581133|ref|YP_003479599.1| - 7.5e-139 462.5 0.0 9.1e-139 462.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|289581133|ref|YP_003479599.1| - 9.8e-31 105.3 0.9 1.3e-30 104.9 0.0 1.7 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|289581133|ref|YP_003479599.1| - 0.039 13.8 0.0 0.28 11.0 0.0 2.2 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain AsnC_trans_reg PF01037.21 gi|289581134|ref|YP_003479600.1| - 3.9e-12 45.9 0.0 6.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|289581134|ref|YP_003479600.1| - 4.7e-11 42.1 0.0 9.6e-11 41.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289581134|ref|YP_003479600.1| - 4e-08 33.0 0.1 9.1e-08 31.8 0.1 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|289581134|ref|YP_003479600.1| - 1.9e-07 30.8 0.2 3.2e-07 30.1 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|289581134|ref|YP_003479600.1| - 1.5e-06 28.0 0.0 4e-06 26.7 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|289581134|ref|YP_003479600.1| - 9.7e-06 25.6 0.1 1.9e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|289581134|ref|YP_003479600.1| - 0.00015 21.4 0.0 0.00055 19.6 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289581134|ref|YP_003479600.1| - 0.0002 21.2 0.0 0.00035 20.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|289581134|ref|YP_003479600.1| - 0.00023 20.8 0.0 0.00044 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|289581134|ref|YP_003479600.1| - 0.00023 21.0 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|289581134|ref|YP_003479600.1| - 0.00065 19.8 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|289581134|ref|YP_003479600.1| - 0.001 18.8 0.1 0.0024 17.7 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.22 gi|289581134|ref|YP_003479600.1| - 0.0029 17.5 0.0 0.0055 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|289581134|ref|YP_003479600.1| - 0.0031 17.3 0.1 0.0062 16.3 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|289581134|ref|YP_003479600.1| - 0.004 17.0 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|289581134|ref|YP_003479600.1| - 0.0056 16.9 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 gi|289581134|ref|YP_003479600.1| - 0.025 15.2 0.0 0.06 13.9 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_40 PF14493.6 gi|289581134|ref|YP_003479600.1| - 0.039 14.4 0.0 0.059 13.8 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|289581134|ref|YP_003479600.1| - 0.042 13.7 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|289581134|ref|YP_003479600.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.15 gi|289581134|ref|YP_003479600.1| - 0.065 13.3 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_50 PF18024.1 gi|289581134|ref|YP_003479600.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|289581134|ref|YP_003479600.1| - 0.069 12.9 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|289581134|ref|YP_003479600.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|289581134|ref|YP_003479600.1| - 0.074 12.6 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Rrf2 PF02082.20 gi|289581134|ref|YP_003479600.1| - 0.077 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Cdc6_C PF09079.11 gi|289581134|ref|YP_003479600.1| - 0.092 12.7 0.0 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_27 PF13463.6 gi|289581134|ref|YP_003479600.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.19 gi|289581134|ref|YP_003479600.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_36 PF13730.6 gi|289581134|ref|YP_003479600.1| - 0.15 12.0 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289581134|ref|YP_003479600.1| - 0.19 11.4 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 ABC_membrane PF00664.23 gi|289581135|ref|YP_003479601.1| - 5.7e-31 108.2 6.3 7.5e-31 107.8 6.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region Wzy_C PF04932.15 gi|289581135|ref|YP_003479601.1| - 0.011 15.3 1.3 0.9 9.2 0.1 2.2 2 0 0 2 2 2 0 O-Antigen ligase EI24 PF07264.11 gi|289581135|ref|YP_003479601.1| - 0.27 11.5 8.9 0.41 10.9 8.9 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Tetraspanin PF00335.20 gi|289581135|ref|YP_003479601.1| - 0.99 9.1 5.5 1.5 8.4 5.5 1.3 1 0 0 1 1 1 0 Tetraspanin family SBP_bac_6 PF13343.6 gi|289581136|ref|YP_003479602.1| - 3.9e-17 62.5 0.0 5.2e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|289581136|ref|YP_003479602.1| - 3.3e-13 50.1 0.6 4.7e-13 49.6 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289581136|ref|YP_003479602.1| - 2.1e-10 40.8 0.1 3.6e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289581136|ref|YP_003479602.1| - 3.9e-09 36.9 1.9 1.9e-08 34.7 1.9 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|289581136|ref|YP_003479602.1| - 0.22 10.9 1.9 0.46 9.9 1.9 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|289581136|ref|YP_003479602.1| - 4.2 7.4 8.2 0.063 13.1 1.2 1.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|289581137|ref|YP_003479603.1| - 7.2e-34 117.2 0.0 2.2e-33 115.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter BPD_transp_1 PF00528.22 gi|289581137|ref|YP_003479603.1| - 1.6e-22 80.1 50.0 4.2e-15 55.9 14.6 3.3 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component TOBE_2 PF08402.10 gi|289581137|ref|YP_003479603.1| - 6.3e-08 32.7 1.3 2.2e-07 31.0 0.2 2.6 2 1 1 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|289581137|ref|YP_003479603.1| - 0.00013 21.9 0.5 0.49 10.2 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|289581137|ref|YP_003479603.1| - 0.0021 18.5 0.0 0.0044 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|289581137|ref|YP_003479603.1| - 0.003 18.0 0.0 0.022 15.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|289581137|ref|YP_003479603.1| - 0.0053 16.7 0.1 0.0095 15.9 0.1 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|289581137|ref|YP_003479603.1| - 0.043 14.1 0.0 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289581137|ref|YP_003479603.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase HTH_5 PF01022.20 gi|289581138|ref|YP_003479604.1| - 1.3e-13 50.6 0.0 2e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289581138|ref|YP_003479604.1| - 3.5e-12 46.2 0.0 5.4e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289581138|ref|YP_003479604.1| - 7.8e-05 22.5 0.0 0.00011 21.9 0.0 1.3 1 1 0 1 1 1 1 MarR family PadR PF03551.14 gi|289581138|ref|YP_003479604.1| - 0.00076 19.4 0.2 0.0035 17.3 0.2 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|289581138|ref|YP_003479604.1| - 0.0012 18.3 0.0 0.0082 15.7 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|289581138|ref|YP_003479604.1| - 0.0018 18.0 0.1 0.003 17.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|289581138|ref|YP_003479604.1| - 0.0037 17.2 0.0 0.0054 16.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|289581138|ref|YP_003479604.1| - 0.0038 17.7 0.1 0.0056 17.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|289581138|ref|YP_003479604.1| - 0.0041 17.2 0.0 0.008 16.3 0.0 1.5 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 gi|289581138|ref|YP_003479604.1| - 0.0063 16.4 0.0 0.0092 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 gi|289581138|ref|YP_003479604.1| - 0.014 15.6 0.1 0.02 15.1 0.1 1.2 1 0 0 1 1 1 0 PaaX-like protein LexA_DNA_bind PF01726.16 gi|289581138|ref|YP_003479604.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_45 PF14947.6 gi|289581138|ref|YP_003479604.1| - 0.023 14.7 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|289581138|ref|YP_003479604.1| - 0.037 14.1 0.4 0.57 10.3 0.5 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.17 gi|289581138|ref|YP_003479604.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|289581138|ref|YP_003479604.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PAS PF00989.25 gi|289581139|ref|YP_003479605.1| - 0.092 12.8 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 PAS fold NMT1 PF09084.11 gi|289581140|ref|YP_003479606.1| - 2.6e-16 60.2 0.0 4e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like MarR_2 PF12802.7 gi|289581140|ref|YP_003479606.1| - 0.00018 21.3 0.2 0.00068 19.5 0.2 2.0 1 0 0 1 1 1 1 MarR family Trypan_PARP PF05887.11 gi|289581140|ref|YP_003479606.1| - 0.00024 21.1 1.6 0.00024 21.1 1.6 1.9 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) HTH_IclR PF09339.10 gi|289581140|ref|YP_003479606.1| - 0.0042 16.9 2.0 0.019 14.8 0.1 2.8 2 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|289581140|ref|YP_003479606.1| - 0.014 15.4 1.6 0.047 13.8 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|289581140|ref|YP_003479606.1| - 0.019 14.8 0.0 0.043 13.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 gi|289581140|ref|YP_003479606.1| - 0.03 14.5 0.1 0.073 13.3 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.22 gi|289581140|ref|YP_003479606.1| - 0.054 13.4 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 MarR family Cpn60_TCP1 PF00118.24 gi|289581143|ref|YP_003479609.1| - 1.7e-166 554.7 14.0 2e-166 554.5 14.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Baculo_11_kDa PF06143.11 gi|289581143|ref|YP_003479609.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Baculovirus 11 kDa family HrpB7 PF09486.10 gi|289581143|ref|YP_003479609.1| - 1.3 9.4 6.2 0.64 10.4 0.1 3.0 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) DUF1962 PF09227.10 gi|289581144|ref|YP_003479610.1| - 0.066 13.6 0.1 0.074 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1962) Ribonuc_L-PSP PF01042.21 gi|289581146|ref|YP_003479612.1| - 3e-37 127.3 0.0 3.4e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DHquinase_I PF01487.15 gi|289581146|ref|YP_003479612.1| - 0.059 13.6 0.0 0.073 13.3 0.0 1.1 1 0 0 1 1 1 0 Type I 3-dehydroquinase PALP PF00291.25 gi|289581147|ref|YP_003479613.1| - 1.2e-86 290.7 5.5 1.6e-86 290.4 5.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|289581147|ref|YP_003479613.1| - 2.4e-05 24.0 0.0 9.2e-05 22.1 0.0 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|289581147|ref|YP_003479613.1| - 0.00034 21.1 0.0 0.0011 19.5 0.0 1.9 2 0 0 2 2 2 1 ACT domain CagE_TrbE_VirB PF03135.14 gi|289581147|ref|YP_003479613.1| - 0.062 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system DUF1338 PF07063.13 gi|289581147|ref|YP_003479613.1| - 0.067 12.4 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) GGACT PF06094.12 gi|289581148|ref|YP_003479614.1| - 9.2e-12 45.6 0.2 7.3e-11 42.7 0.2 2.3 1 1 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|289581148|ref|YP_003479614.1| - 0.012 16.0 0.0 0.025 15.0 0.0 1.6 1 0 0 1 1 1 0 AIG2-like family Citrate_synt PF00285.21 gi|289581149|ref|YP_003479615.1| - 3.6e-128 427.6 0.0 4.1e-128 427.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Glyoxalase PF00903.25 gi|289581150|ref|YP_003479616.1| - 7.1e-09 35.9 0.1 1.2e-08 35.2 0.1 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289581150|ref|YP_003479616.1| - 6.4e-05 23.2 0.2 0.0019 18.4 0.1 2.3 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|289581150|ref|YP_003479616.1| - 0.016 15.2 0.0 0.086 12.8 0.0 2.0 1 1 0 1 1 1 0 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|289581150|ref|YP_003479616.1| - 0.046 13.8 0.0 1.6 8.8 0.0 2.0 1 1 1 2 2 2 0 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|289581150|ref|YP_003479616.1| - 0.069 14.0 0.5 0.11 13.3 0.5 1.4 1 1 0 1 1 1 0 Glyoxalase-like domain SepF PF04472.12 gi|289581151|ref|YP_003479617.1| - 7.1e-17 61.5 1.5 7.1e-17 61.5 1.5 1.5 2 0 0 2 2 2 1 Cell division protein SepF Rx_N PF18052.1 gi|289581151|ref|YP_003479617.1| - 0.016 15.5 0.8 0.033 14.5 0.8 1.6 1 1 0 1 1 1 0 Rx N-terminal domain Lar_N PF09861.9 gi|289581151|ref|YP_003479617.1| - 0.019 14.1 0.2 0.023 13.9 0.2 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain DUF1028 PF06267.12 gi|289581152|ref|YP_003479618.1| - 3e-64 216.4 0.2 3.9e-64 216.0 0.2 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) GvpH PF05455.11 gi|289581153|ref|YP_003479619.1| - 7.3e-07 29.4 0.1 1.2e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 GvpH PUA PF01472.20 gi|289581154|ref|YP_003479620.1| - 1.1e-17 63.8 1.2 1.7e-17 63.1 1.2 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|289581154|ref|YP_003479620.1| - 0.0099 16.1 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1211 PF06736.11 gi|289581155|ref|YP_003479621.1| - 1.2e-25 89.7 0.6 1.2e-25 89.7 0.6 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1211) DUF1930 PF09122.10 gi|289581156|ref|YP_003479622.1| - 0.019 15.0 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) zf-C3HC PF07967.13 gi|289581156|ref|YP_003479622.1| - 0.021 14.8 0.3 0.023 14.7 0.3 1.0 1 0 0 1 1 1 0 C3HC zinc finger-like DZR PF12773.7 gi|289581156|ref|YP_003479622.1| - 0.021 14.8 1.2 0.034 14.2 1.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289581156|ref|YP_003479622.1| - 0.15 12.2 2.1 7.7 6.7 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain GTP_EFTU PF00009.27 gi|289581158|ref|YP_003479624.1| - 3.7e-30 104.9 1.0 1.3e-29 103.1 1.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|289581158|ref|YP_003479624.1| - 4.1e-28 97.4 0.0 9.4e-28 96.3 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|289581158|ref|YP_003479624.1| - 1.3e-07 31.9 1.2 4.5e-07 30.2 1.2 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|289581158|ref|YP_003479624.1| - 1.2e-05 25.2 0.5 0.00088 19.2 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|289581158|ref|YP_003479624.1| - 8.4e-05 22.6 0.0 0.00022 21.3 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|289581158|ref|YP_003479624.1| - 0.013 15.0 0.9 5.4 6.5 0.4 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|289581158|ref|YP_003479624.1| - 0.015 15.0 0.5 0.25 11.1 0.0 2.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|289581158|ref|YP_003479624.1| - 0.019 14.4 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|289581158|ref|YP_003479624.1| - 0.022 14.7 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PIN_9 PF18477.1 gi|289581159|ref|YP_003479625.1| - 3.3e-38 130.6 0.2 3.7e-38 130.4 0.2 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|289581159|ref|YP_003479625.1| - 9.2e-07 28.6 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.6 gi|289581159|ref|YP_003479625.1| - 0.018 15.8 0.8 0.042 14.6 0.8 1.7 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|289581160|ref|YP_003479626.1| - 7e-15 55.2 0.0 1.1e-14 54.6 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|289581160|ref|YP_003479626.1| - 3.6e-14 52.9 0.1 7.9e-14 51.8 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|289581160|ref|YP_003479626.1| - 0.023 14.9 0.0 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|289581161|ref|YP_003479627.1| - 2.1e-13 50.1 0.1 2.6e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|289581161|ref|YP_003479627.1| - 0.00056 19.9 0.4 0.00067 19.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RRN7 PF11781.8 gi|289581161|ref|YP_003479627.1| - 0.049 13.3 3.6 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|289581161|ref|YP_003479627.1| - 0.3 10.8 2.4 0.42 10.4 2.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF359 PF04019.12 gi|289581162|ref|YP_003479628.1| - 4.3e-39 133.0 0.1 6.5e-39 132.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|289581162|ref|YP_003479628.1| - 0.06 13.3 0.0 0.18 11.8 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4911) FAA_hydrolase PF01557.18 gi|289581164|ref|YP_003479630.1| - 2.1e-59 200.9 0.0 2.8e-59 200.4 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HU-HIG PF18291.1 gi|289581164|ref|YP_003479630.1| - 0.044 13.9 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif Cyclase PF04199.13 gi|289581165|ref|YP_003479631.1| - 3.5e-33 114.7 0.0 8.2e-33 113.5 0.0 1.6 1 1 1 2 2 2 1 Putative cyclase NTP_transf_2 PF01909.23 gi|289581167|ref|YP_003479633.1| - 6e-09 36.1 0.1 9.6e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|289581167|ref|YP_003479633.1| - 1e-06 28.7 0.0 1.6e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|289581167|ref|YP_003479633.1| - 1.8e-05 24.5 0.2 0.0007 19.4 0.1 2.3 2 0 0 2 2 2 1 MarR family RP-C PF03428.13 gi|289581167|ref|YP_003479633.1| - 0.0075 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_IclR PF09339.10 gi|289581167|ref|YP_003479633.1| - 0.016 15.0 0.1 0.031 14.1 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain FAD_binding_3 PF01494.19 gi|289581168|ref|YP_003479634.1| - 3.9e-13 49.4 0.7 6.3e-09 35.5 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|289581168|ref|YP_003479634.1| - 5.4e-06 25.7 0.0 0.009 15.1 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|289581168|ref|YP_003479634.1| - 4.9e-05 22.7 0.1 0.0022 17.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289581168|ref|YP_003479634.1| - 0.00024 20.8 0.6 0.11 12.0 0.1 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289581168|ref|YP_003479634.1| - 0.0029 16.8 0.4 0.012 14.7 0.2 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|289581168|ref|YP_003479634.1| - 0.006 15.9 0.1 0.093 12.0 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|289581168|ref|YP_003479634.1| - 0.0093 15.3 0.0 0.013 14.9 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289581168|ref|YP_003479634.1| - 0.014 14.2 0.1 0.065 11.9 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|289581168|ref|YP_003479634.1| - 0.039 14.2 0.2 0.22 11.8 0.1 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain MatE PF01554.18 gi|289581170|ref|YP_003479636.1| - 4.2e-43 146.8 36.9 7.5e-23 81.0 12.7 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|289581170|ref|YP_003479636.1| - 9.7e-07 28.9 5.0 9.7e-07 28.9 5.0 4.7 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain APH PF01636.23 gi|289581172|ref|YP_003479638.1| - 1.5e-15 57.8 5.1 2.5e-15 57.1 5.1 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|289581172|ref|YP_003479638.1| - 2.4e-08 33.6 0.0 4.6e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 Fructosamine kinase APH_6_hur PF04655.14 gi|289581172|ref|YP_003479638.1| - 0.031 13.6 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Choline_kinase PF01633.20 gi|289581172|ref|YP_003479638.1| - 0.036 13.7 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Choline/ethanolamine kinase GCV_T PF01571.21 gi|289581173|ref|YP_003479639.1| - 2.8e-39 135.0 0.0 3.8e-39 134.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|289581173|ref|YP_003479639.1| - 3.8e-12 46.0 0.0 3.2e-11 43.0 0.0 2.4 1 1 1 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain DUF848 PF05852.11 gi|289581174|ref|YP_003479640.1| - 0.061 13.4 0.7 0.075 13.1 0.7 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) HTH_20 PF12840.7 gi|289581174|ref|YP_003479640.1| - 0.072 13.2 0.5 0.099 12.7 0.5 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|289581174|ref|YP_003479640.1| - 0.15 11.7 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix FANCI_S1-cap PF14674.6 gi|289581174|ref|YP_003479640.1| - 0.18 11.9 0.1 0.28 11.3 0.1 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap Rubredoxin PF00301.20 gi|289581175|ref|YP_003479641.1| - 0.86 9.7 3.9 0.85 9.7 0.2 2.9 2 0 0 2 2 2 0 Rubredoxin Cas_CXXC_CXXC PF09706.10 gi|289581175|ref|YP_003479641.1| - 1 9.7 2.6 15 5.9 0.0 2.5 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_CXXC_CXXC) zinc_ribbon_9 PF14369.6 gi|289581175|ref|YP_003479641.1| - 7 7.0 7.6 3.6 7.9 2.3 2.9 2 1 1 3 3 3 0 zinc-ribbon DUF5611 PF18446.1 gi|289581176|ref|YP_003479642.1| - 3.9e-29 101.5 0.1 4.4e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF1206 PF06724.11 gi|289581177|ref|YP_003479643.1| - 0.00061 19.8 0.5 0.00061 19.8 0.5 2.0 1 1 1 2 2 2 2 Domain of Unknown Function (DUF1206) Chlor_dismutase PF06778.12 gi|289581178|ref|YP_003479644.1| - 8.8e-63 211.4 0.0 1.6e-62 210.5 0.0 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|289581178|ref|YP_003479644.1| - 3e-10 40.1 9.4 1e-09 38.3 0.1 3.9 4 0 0 4 4 4 2 Antibiotic biosynthesis monooxygenase PadR PF03551.14 gi|289581179|ref|YP_003479645.1| - 2.5e-23 81.8 0.3 3.8e-23 81.2 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|289581179|ref|YP_003479645.1| - 0.0011 19.6 0.1 0.0017 19.0 0.1 1.2 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.19 gi|289581179|ref|YP_003479645.1| - 0.062 13.2 0.1 0.2 11.6 0.1 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_M50 PF02163.22 gi|289581180|ref|YP_003479646.1| - 5.4e-23 81.6 0.0 1.7e-22 79.9 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|289581180|ref|YP_003479646.1| - 1.1e-19 70.5 11.1 5.6e-09 36.2 0.4 3.3 1 1 2 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|289581180|ref|YP_003479646.1| - 9.3e-13 47.8 7.1 1.1e-08 34.7 1.1 2.7 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|289581180|ref|YP_003479646.1| - 1.6e-08 34.8 4.2 4.2e-06 27.0 0.4 2.6 1 1 1 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 gi|289581180|ref|YP_003479646.1| - 1.1e-05 25.2 3.4 0.068 13.1 0.1 3.0 2 1 1 3 3 3 2 Tricorn protease PDZ domain Myosin_N PF02736.19 gi|289581180|ref|YP_003479646.1| - 0.11 12.3 1.0 0.53 10.2 1.0 2.2 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain DUF898 PF05987.13 gi|289581180|ref|YP_003479646.1| - 0.26 10.3 8.7 0.069 12.2 1.2 2.4 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF898) tRNA-synt_1f PF01921.18 gi|289581181|ref|YP_003479647.1| - 3.1e-101 338.9 0.0 4.9e-101 338.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|289581181|ref|YP_003479647.1| - 4.9e-09 35.4 0.0 1.1e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|289581181|ref|YP_003479647.1| - 0.00099 18.5 0.0 0.014 14.8 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|289581181|ref|YP_003479647.1| - 0.25 10.6 0.0 18 4.6 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.28 gi|289581182|ref|YP_003479648.1| - 4.1e-25 88.8 6.3 7.5e-25 87.9 6.3 1.4 1 1 0 1 1 1 1 Amino acid kinase family DUF2844 PF11005.8 gi|289581182|ref|YP_003479648.1| - 0.0081 16.2 0.1 0.052 13.6 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2844) PGA_cap PF09587.10 gi|289581183|ref|YP_003479649.1| - 3e-66 223.5 0.0 3.6e-66 223.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Glyco_transf_4 PF13439.6 gi|289581183|ref|YP_003479649.1| - 0.025 14.6 0.1 0.053 13.5 0.1 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 DUF5302 PF17227.2 gi|289581183|ref|YP_003479649.1| - 0.066 14.2 0.1 0.17 12.9 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5302) MoaE PF02391.17 gi|289581184|ref|YP_003479650.1| - 5.9e-25 87.7 0.1 1.3e-24 86.7 0.1 1.6 1 0 0 1 1 1 1 MoaE protein DUF3906 PF13046.6 gi|289581184|ref|YP_003479650.1| - 0.017 15.2 0.2 0.038 14.1 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3906) Peptidase_M50 PF02163.22 gi|289581186|ref|YP_003479652.1| - 2.2e-13 50.1 14.4 3.3e-07 29.8 3.3 2.6 2 1 0 3 3 3 2 Peptidase family M50 AIRS PF00586.24 gi|289581187|ref|YP_003479653.1| - 3.2e-18 66.2 4.0 6.4e-18 65.2 4.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|289581187|ref|YP_003479653.1| - 7.3e-10 39.2 0.2 1.1e-09 38.6 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.19 gi|289581188|ref|YP_003479654.1| - 5e-45 152.6 0.0 5.6e-45 152.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.20 gi|289581188|ref|YP_003479654.1| - 0.048 14.0 0.0 0.2 12.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Mrr_N PF14338.6 gi|289581188|ref|YP_003479654.1| - 0.054 13.6 0.0 2.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|289581188|ref|YP_003479654.1| - 0.076 13.0 1.0 0.16 11.9 0.3 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.20 gi|289581189|ref|YP_003479655.1| - 7.2e-27 93.9 14.8 8.3e-27 93.7 14.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|289581189|ref|YP_003479655.1| - 0.013 16.0 0.1 0.021 15.3 0.1 1.6 1 1 0 1 1 1 0 PCI domain Arg_decarbox_C PF17944.1 gi|289581189|ref|YP_003479655.1| - 2.1 8.9 0.0 2.1 8.9 0.0 2.6 2 1 1 3 3 3 0 Arginine decarboxylase C-terminal helical extension Asn_synthase PF00733.21 gi|289581190|ref|YP_003479656.1| - 0.00023 20.9 0.0 0.00033 20.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|289581190|ref|YP_003479656.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF1616 PF07760.11 gi|289581191|ref|YP_003479657.1| - 0.037 13.4 5.0 0.05 13.0 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF4968 PF16338.5 gi|289581191|ref|YP_003479657.1| - 0.48 10.8 5.3 1.8 8.9 0.9 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4968) MarR_2 PF12802.7 gi|289581192|ref|YP_003479658.1| - 3.7e-06 26.7 0.0 6.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|289581192|ref|YP_003479658.1| - 1.9e-05 24.5 0.1 3.1e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289581192|ref|YP_003479658.1| - 4.3e-05 23.0 0.1 6.4e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|289581192|ref|YP_003479658.1| - 0.00014 21.5 0.1 0.00021 20.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|289581192|ref|YP_003479658.1| - 0.00021 21.1 0.1 0.00034 20.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|289581192|ref|YP_003479658.1| - 0.00095 18.9 0.1 0.0017 18.1 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|289581192|ref|YP_003479658.1| - 0.0012 18.8 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|289581192|ref|YP_003479658.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain RepL PF05732.11 gi|289581192|ref|YP_003479658.1| - 0.0036 16.7 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) TBPIP PF07106.13 gi|289581192|ref|YP_003479658.1| - 0.0041 17.0 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain Penicillinase_R PF03965.16 gi|289581192|ref|YP_003479658.1| - 0.0043 17.4 0.0 0.0071 16.7 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|289581192|ref|YP_003479658.1| - 0.011 16.2 0.0 0.022 15.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|289581192|ref|YP_003479658.1| - 0.027 14.6 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|289581192|ref|YP_003479658.1| - 0.067 13.2 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|289581192|ref|YP_003479658.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|289581192|ref|YP_003479658.1| - 0.13 12.2 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 HTH domain DUF5134 PF17197.4 gi|289581192|ref|YP_003479658.1| - 0.67 9.9 3.2 2.6 7.9 3.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF5134) tRNA-synt_His PF13393.6 gi|289581194|ref|YP_003479660.1| - 4.1e-50 170.8 0.0 5.7e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|289581194|ref|YP_003479660.1| - 1.3e-11 44.5 0.4 3.8e-11 43.0 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|289581194|ref|YP_003479660.1| - 5e-08 33.1 0.0 6e-08 32.9 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|289581194|ref|YP_003479660.1| - 0.0032 17.0 0.0 0.0093 15.5 0.0 1.7 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) FAD_binding_2 PF00890.24 gi|289581195|ref|YP_003479661.1| - 6.1e-10 38.8 0.4 1e-06 28.1 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|289581195|ref|YP_003479661.1| - 7.9e-10 38.8 8.0 9.2e-05 22.2 0.0 2.5 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|289581195|ref|YP_003479661.1| - 3.9e-09 36.4 3.9 1.3e-08 34.6 3.9 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289581195|ref|YP_003479661.1| - 2e-08 33.8 1.3 0.00085 18.6 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289581195|ref|YP_003479661.1| - 1.9e-06 26.8 1.4 0.00092 18.0 0.8 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|289581195|ref|YP_003479661.1| - 2.8e-06 26.7 0.0 4.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|289581195|ref|YP_003479661.1| - 1.4e-05 24.6 1.5 0.012 14.9 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|289581195|ref|YP_003479661.1| - 1.6e-05 24.0 3.1 0.0068 15.3 0.1 2.4 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|289581195|ref|YP_003479661.1| - 6.3e-05 23.5 2.2 0.18 12.4 0.5 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289581195|ref|YP_003479661.1| - 7.1e-05 23.0 0.0 0.0002 21.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|289581195|ref|YP_003479661.1| - 0.00022 20.4 8.0 0.019 14.1 0.5 2.9 2 1 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|289581195|ref|YP_003479661.1| - 0.0008 18.8 0.1 0.0015 17.9 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|289581195|ref|YP_003479661.1| - 0.035 13.4 1.1 0.062 12.5 0.3 1.8 2 0 0 2 2 2 0 Thi4 family Glyco_hydro_38C PF07748.13 gi|289581195|ref|YP_003479661.1| - 0.18 11.9 0.5 0.78 9.8 0.0 2.1 3 0 0 3 3 3 0 Glycosyl hydrolases family 38 C-terminal domain ABC2_membrane_2 PF12679.7 gi|289581196|ref|YP_003479662.1| - 5.4e-52 176.9 24.6 3.8e-27 95.3 7.4 2.5 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289581196|ref|YP_003479662.1| - 2.7e-10 40.2 17.5 9.5e-06 25.3 6.4 2.4 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|289581196|ref|YP_003479662.1| - 2.6e-06 27.0 34.1 1.6e-05 24.4 10.7 2.6 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|289581196|ref|YP_003479662.1| - 0.0037 16.4 28.5 0.015 14.4 7.2 2.5 2 1 1 3 3 3 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289581198|ref|YP_003479664.1| - 7.4e-24 84.8 0.0 1.8e-23 83.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289581198|ref|YP_003479664.1| - 9.5e-11 42.0 0.2 7.5e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581198|ref|YP_003479664.1| - 7.8e-08 32.9 0.0 1.5e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|289581198|ref|YP_003479664.1| - 7.3e-05 22.3 0.1 0.19 11.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289581198|ref|YP_003479664.1| - 8.1e-05 22.3 0.1 0.00018 21.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289581198|ref|YP_003479664.1| - 0.0036 17.8 0.0 0.0052 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289581198|ref|YP_003479664.1| - 0.0042 16.9 0.0 2 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|289581198|ref|YP_003479664.1| - 0.0062 16.3 0.0 0.018 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|289581198|ref|YP_003479664.1| - 0.067 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|289581198|ref|YP_003479664.1| - 0.085 12.6 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sulfatase PF00884.23 gi|289581201|ref|YP_003479667.1| - 8.6e-50 169.9 0.6 1.2e-49 169.5 0.6 1.2 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|289581201|ref|YP_003479667.1| - 2.7e-12 46.9 0.0 4.5e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|289581201|ref|YP_003479667.1| - 6.4e-07 29.3 0.3 0.014 15.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|289581201|ref|YP_003479667.1| - 0.005 15.5 0.0 0.0076 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Prok-JAB PF14464.6 gi|289581204|ref|YP_003479670.1| - 1.2e-21 76.7 0.1 1.6e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|289581204|ref|YP_003479670.1| - 1.4e-12 47.6 0.0 1.9e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.15 gi|289581204|ref|YP_003479670.1| - 0.14 12.2 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain Peripla_BP_2 PF01497.18 gi|289581205|ref|YP_003479671.1| - 6.7e-21 74.9 0.2 1.6e-19 70.4 0.2 2.2 1 1 0 1 1 1 1 Periplasmic binding protein DUF883 PF05957.13 gi|289581205|ref|YP_003479671.1| - 0.052 14.2 0.3 0.12 13.0 0.3 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) PLDc_2 PF13091.6 gi|289581207|ref|YP_003479673.1| - 9.7e-10 38.4 0.0 1.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|289581207|ref|YP_003479673.1| - 0.00021 20.7 0.0 0.00026 20.4 0.0 1.1 1 0 0 1 1 1 1 NgoFVII restriction endonuclease YdjM PF04307.14 gi|289581208|ref|YP_003479674.1| - 0.0018 17.6 22.9 0.062 12.6 22.9 2.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1611_N PF17396.2 gi|289581208|ref|YP_003479674.1| - 0.044 14.0 0.2 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Peptidase_M32 PF02074.15 gi|289581209|ref|YP_003479675.1| - 2.6e-163 544.3 0.0 3e-163 544.1 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF3731 PF12531.8 gi|289581209|ref|YP_003479675.1| - 0.086 12.6 0.2 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 DNA-K related protein Peptidase_M32 PF02074.15 gi|289581210|ref|YP_003479676.1| - 1.6e-178 594.5 0.0 1.8e-178 594.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF2953 PF11167.8 gi|289581212|ref|YP_003479678.1| - 0.046 13.8 0.9 0.14 12.3 0.9 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Proton_antipo_N PF00662.20 gi|289581212|ref|YP_003479678.1| - 0.092 12.8 0.6 0.092 12.8 0.6 2.5 2 1 1 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Yip1 PF04893.17 gi|289581212|ref|YP_003479678.1| - 0.11 12.2 24.2 0.13 12.0 24.2 1.1 1 0 0 1 1 1 0 Yip1 domain Peptidase_M20 PF01546.28 gi|289581213|ref|YP_003479679.1| - 1.2e-22 80.6 9.0 4.2e-22 78.9 9.0 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289581213|ref|YP_003479679.1| - 3e-17 62.5 0.3 5.1e-17 61.8 0.3 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|289581213|ref|YP_003479679.1| - 0.11 11.6 1.4 4.1 6.4 0.1 2.8 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase Protoglobin PF11563.8 gi|289581214|ref|YP_003479680.1| - 7.4e-28 97.4 9.2 2e-25 89.6 0.2 3.8 3 1 0 3 3 3 2 Protoglobin MCPsignal PF00015.21 gi|289581214|ref|YP_003479680.1| - 1.6e-21 76.9 40.4 7e-20 71.5 20.3 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|289581214|ref|YP_003479680.1| - 0.0028 17.9 11.5 1.9 8.9 0.1 4.9 3 1 1 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|289581214|ref|YP_003479680.1| - 0.0077 15.2 4.9 0.071 12.1 2.8 2.3 2 0 0 2 2 2 1 Intra-flagellar transport protein 57 DUF948 PF06103.11 gi|289581214|ref|YP_003479680.1| - 0.018 15.3 25.5 0.16 12.2 2.6 5.5 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|289581214|ref|YP_003479680.1| - 0.022 14.9 5.2 1.2 9.2 0.0 3.2 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Sec34 PF04136.15 gi|289581214|ref|YP_003479680.1| - 0.039 13.8 8.4 3.5 7.5 0.6 4.3 2 2 2 4 4 4 0 Sec34-like family Atg14 PF10186.9 gi|289581214|ref|YP_003479680.1| - 0.12 11.5 10.1 0.033 13.3 1.8 2.6 2 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 RLL PF10036.9 gi|289581214|ref|YP_003479680.1| - 0.13 12.1 0.0 0.13 12.1 0.0 3.1 1 1 1 3 3 3 0 RNA transcription, translation and transport factor protein EzrA PF06160.12 gi|289581214|ref|YP_003479680.1| - 0.13 10.4 9.4 0.73 7.9 1.5 2.4 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA DASH_Dad2 PF08654.10 gi|289581214|ref|YP_003479680.1| - 0.25 11.8 10.2 4.5 7.8 0.0 4.1 2 2 1 3 3 3 0 DASH complex subunit Dad2 TMPIT PF07851.13 gi|289581214|ref|YP_003479680.1| - 0.25 10.5 1.6 1.6 7.9 0.4 2.2 2 0 0 2 2 2 0 TMPIT-like protein DUF1664 PF07889.12 gi|289581214|ref|YP_003479680.1| - 0.3 11.1 16.1 4.6 7.3 0.8 4.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) ING PF12998.7 gi|289581214|ref|YP_003479680.1| - 0.31 11.6 4.6 5.6 7.6 0.2 3.2 3 1 1 4 4 3 0 Inhibitor of growth proteins N-terminal histone-binding CCDC84 PF14968.6 gi|289581214|ref|YP_003479680.1| - 0.34 10.5 5.1 2.1 7.9 2.4 2.1 2 0 0 2 2 2 0 Coiled coil protein 84 FH2 PF02181.23 gi|289581214|ref|YP_003479680.1| - 0.37 9.9 3.6 0.21 10.7 0.9 1.9 2 1 0 2 2 2 0 Formin Homology 2 Domain Fib_alpha PF08702.10 gi|289581214|ref|YP_003479680.1| - 0.38 11.0 4.3 9.2 6.4 1.0 3.2 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family HeLo PF14479.6 gi|289581214|ref|YP_003479680.1| - 0.44 10.3 10.6 0.36 10.7 2.0 2.5 2 0 0 2 2 2 0 Prion-inhibition and propagation HisKA PF00512.25 gi|289581214|ref|YP_003479680.1| - 0.46 10.6 15.2 3.4 7.8 0.2 5.0 4 1 0 5 5 5 0 His Kinase A (phospho-acceptor) domain ATG16 PF08614.11 gi|289581214|ref|YP_003479680.1| - 0.72 10.0 27.8 10 6.3 13.1 3.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) CorA PF01544.18 gi|289581214|ref|YP_003479680.1| - 0.75 9.0 16.5 1 8.6 5.8 2.7 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Syntaxin-6_N PF09177.11 gi|289581214|ref|YP_003479680.1| - 1.1 9.8 17.9 6.2 7.4 1.2 4.9 2 1 2 5 5 4 0 Syntaxin 6, N-terminal Laminin_II PF06009.12 gi|289581214|ref|YP_003479680.1| - 1.4 8.9 27.6 6 6.9 5.2 4.4 2 2 2 4 4 4 0 Laminin Domain II DASH_Spc19 PF08287.11 gi|289581214|ref|YP_003479680.1| - 1.4 8.8 14.8 0.82 9.5 3.8 3.1 1 1 1 3 3 3 0 Spc19 Synaptobrevin PF00957.21 gi|289581214|ref|YP_003479680.1| - 1.7 8.5 7.7 2.5 8.0 0.1 3.3 3 0 0 3 3 3 0 Synaptobrevin COG2 PF06148.11 gi|289581214|ref|YP_003479680.1| - 1.9 8.6 11.3 4.4 7.4 0.6 4.3 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 gi|289581214|ref|YP_003479680.1| - 3.4 7.7 19.9 4.4 7.4 1.1 4.2 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus ISG65-75 PF11727.8 gi|289581214|ref|YP_003479680.1| - 6.7 5.8 29.5 1.2 8.3 11.3 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein NPV_P10 PF05531.12 gi|289581214|ref|YP_003479680.1| - 7.2 7.2 18.6 4 8.0 0.5 4.8 3 2 0 3 3 3 0 Nucleopolyhedrovirus P10 protein T2SSE PF00437.20 gi|289581215|ref|YP_003479681.1| - 2.2e-12 46.6 0.2 3.6e-12 45.9 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|289581215|ref|YP_003479681.1| - 0.00038 20.2 0.1 0.0012 18.7 0.1 1.9 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|289581215|ref|YP_003479681.1| - 0.00056 20.3 0.1 0.0015 18.9 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|289581215|ref|YP_003479681.1| - 0.0016 18.2 0.0 0.0043 16.7 0.0 1.8 1 1 0 1 1 1 1 Thymidylate kinase AAA_25 PF13481.6 gi|289581215|ref|YP_003479681.1| - 0.0049 16.5 0.2 0.015 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289581215|ref|YP_003479681.1| - 0.011 16.3 0.7 0.027 15.0 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.14 gi|289581215|ref|YP_003479681.1| - 0.013 15.5 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|289581215|ref|YP_003479681.1| - 0.013 15.2 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|289581215|ref|YP_003479681.1| - 0.014 15.3 0.0 0.041 13.8 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|289581215|ref|YP_003479681.1| - 0.015 15.0 0.0 0.049 13.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|289581215|ref|YP_003479681.1| - 0.023 14.9 0.0 0.093 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|289581215|ref|YP_003479681.1| - 0.023 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|289581215|ref|YP_003479681.1| - 0.025 13.9 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|289581215|ref|YP_003479681.1| - 0.025 14.1 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|289581215|ref|YP_003479681.1| - 0.03 14.6 0.0 0.22 11.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain KH_2 PF07650.17 gi|289581215|ref|YP_003479681.1| - 0.03 14.1 1.6 0.068 13.0 0.8 2.0 2 0 0 2 2 1 0 KH domain Viral_helicase1 PF01443.18 gi|289581215|ref|YP_003479681.1| - 0.044 13.5 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|289581215|ref|YP_003479681.1| - 0.048 14.1 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|289581215|ref|YP_003479681.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|289581215|ref|YP_003479681.1| - 0.057 12.8 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 gi|289581215|ref|YP_003479681.1| - 0.061 13.6 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.26 gi|289581215|ref|YP_003479681.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|289581215|ref|YP_003479681.1| - 0.077 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|289581215|ref|YP_003479681.1| - 0.085 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ZT_dimer PF16916.5 gi|289581215|ref|YP_003479681.1| - 0.09 12.9 0.0 0.42 10.8 0.0 2.2 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ABC_tran PF00005.27 gi|289581215|ref|YP_003479681.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.6 gi|289581215|ref|YP_003479681.1| - 0.12 12.7 0.6 2.2 8.7 0.0 3.2 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|289581215|ref|YP_003479681.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|289581215|ref|YP_003479681.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|289581215|ref|YP_003479681.1| - 0.17 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain NAD_synthase PF02540.17 gi|289581216|ref|YP_003479682.1| - 5.1e-73 245.1 0.0 4e-49 166.9 0.0 2.0 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|289581216|ref|YP_003479682.1| - 4.2e-07 29.1 0.0 0.00051 18.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|289581216|ref|YP_003479682.1| - 0.0005 19.6 0.0 0.0016 18.0 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|289581216|ref|YP_003479682.1| - 0.0011 18.8 0.2 0.0019 17.9 0.2 1.4 1 0 0 1 1 1 1 Asparagine synthase HTH_Tnp_ISL3 PF13542.6 gi|289581216|ref|YP_003479682.1| - 0.017 14.5 0.1 0.041 13.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PAPS_reduct PF01507.19 gi|289581216|ref|YP_003479682.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ABC2_membrane_3 PF12698.7 gi|289581217|ref|YP_003479683.1| - 0.46 9.5 6.1 0.56 9.3 6.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4131 PF13567.6 gi|289581217|ref|YP_003479683.1| - 0.9 9.2 10.9 2.7 7.6 4.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HTH_24 PF13412.6 gi|289581218|ref|YP_003479684.1| - 2.9e-06 26.7 0.0 4.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289581218|ref|YP_003479684.1| - 0.00075 19.3 0.0 0.00091 19.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|289581218|ref|YP_003479684.1| - 0.00088 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|289581218|ref|YP_003479684.1| - 0.001 18.6 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|289581218|ref|YP_003479684.1| - 0.0018 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289581218|ref|YP_003479684.1| - 0.0024 17.7 0.1 0.0033 17.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|289581218|ref|YP_003479684.1| - 0.0031 18.0 0.0 0.0045 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|289581218|ref|YP_003479684.1| - 0.016 15.0 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|289581218|ref|YP_003479684.1| - 0.02 15.0 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289581218|ref|YP_003479684.1| - 0.024 14.4 0.0 0.054 13.3 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|289581218|ref|YP_003479684.1| - 0.025 14.6 0.0 0.63 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|289581218|ref|YP_003479684.1| - 0.026 14.6 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|289581218|ref|YP_003479684.1| - 0.035 14.1 0.1 0.093 12.7 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|289581218|ref|YP_003479684.1| - 0.037 14.2 0.0 0.054 13.7 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 gi|289581218|ref|YP_003479684.1| - 0.048 13.5 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|289581218|ref|YP_003479684.1| - 0.18 11.9 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF2070 PF09843.9 gi|289581220|ref|YP_003479686.1| - 0.03 12.6 1.5 0.036 12.4 1.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|289581221|ref|YP_003479687.1| - 3.9e-41 140.8 0.0 9.1e-21 74.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|289581221|ref|YP_003479687.1| - 2.9e-13 49.8 7.5 8.9e-05 22.0 0.1 4.5 5 0 0 5 5 5 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|289581221|ref|YP_003479687.1| - 3.8e-12 45.8 1.4 7.6e-12 44.9 1.4 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|289581221|ref|YP_003479687.1| - 2.2e-10 40.9 3.1 0.1 12.4 0.0 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|289581221|ref|YP_003479687.1| - 1.9e-07 31.6 0.4 0.014 15.7 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_24 PF13479.6 gi|289581221|ref|YP_003479687.1| - 6e-07 29.4 0.0 0.00061 19.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|289581221|ref|YP_003479687.1| - 1.9e-06 28.2 0.0 0.0032 17.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|289581221|ref|YP_003479687.1| - 4.4e-06 27.3 0.8 0.11 13.0 0.0 2.6 3 0 0 3 3 2 2 AAA domain Rad17 PF03215.15 gi|289581221|ref|YP_003479687.1| - 3.1e-05 24.0 0.1 0.16 11.9 0.0 3.0 2 1 1 3 3 3 2 Rad17 P-loop domain AAA PF00004.29 gi|289581221|ref|YP_003479687.1| - 3.1e-05 24.4 0.0 0.087 13.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|289581221|ref|YP_003479687.1| - 0.00012 22.4 0.0 0.65 10.4 0.0 2.8 3 0 0 3 3 2 2 RNA helicase RsgA_GTPase PF03193.16 gi|289581221|ref|YP_003479687.1| - 0.00014 21.8 0.0 0.32 10.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_33 PF13671.6 gi|289581221|ref|YP_003479687.1| - 0.00037 20.7 0.0 0.3 11.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|289581221|ref|YP_003479687.1| - 0.00043 20.1 0.1 0.35 10.5 0.1 2.8 2 1 0 3 3 3 1 AAA ATPase domain Fer4 PF00037.27 gi|289581221|ref|YP_003479687.1| - 0.00057 19.6 1.6 0.00057 19.6 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|289581221|ref|YP_003479687.1| - 0.001 18.7 0.4 0.83 9.4 0.1 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|289581221|ref|YP_003479687.1| - 0.0014 18.5 0.1 1.9 8.4 0.0 2.8 3 0 0 3 3 3 1 NACHT domain Fer4_6 PF12837.7 gi|289581221|ref|YP_003479687.1| - 0.0017 18.3 12.2 0.0086 16.1 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_14 PF13173.6 gi|289581221|ref|YP_003479687.1| - 0.0019 18.2 0.1 3.1 7.8 0.0 3.7 3 1 0 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|289581221|ref|YP_003479687.1| - 0.0031 17.3 0.1 1.6 8.5 0.0 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain NB-ARC PF00931.22 gi|289581221|ref|YP_003479687.1| - 0.0036 16.5 0.0 0.4 9.8 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_18 PF13238.6 gi|289581221|ref|YP_003479687.1| - 0.0036 17.8 0.0 3.7 8.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|289581221|ref|YP_003479687.1| - 0.036 14.2 0.7 0.79 9.8 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|289581221|ref|YP_003479687.1| - 0.046 14.0 0.5 7.1 6.9 0.0 3.2 3 0 0 3 3 3 0 AAA domain Fer4_7 PF12838.7 gi|289581221|ref|YP_003479687.1| - 0.046 14.3 11.2 0.1 13.2 11.2 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|289581221|ref|YP_003479687.1| - 0.052 13.6 0.0 10 6.1 0.0 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) CLP1_P PF16575.5 gi|289581221|ref|YP_003479687.1| - 0.082 12.7 0.1 3.9 7.2 0.1 2.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 gi|289581221|ref|YP_003479687.1| - 0.091 12.8 0.2 17 5.4 0.0 2.9 3 0 0 3 3 2 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|289581221|ref|YP_003479687.1| - 0.091 12.5 0.2 8.8 6.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|289581221|ref|YP_003479687.1| - 0.098 12.2 2.4 27 4.3 0.0 3.6 4 0 0 4 4 4 0 AAA domain SRP54 PF00448.22 gi|289581221|ref|YP_003479687.1| - 0.11 12.1 0.6 6.2 6.4 0.1 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|289581221|ref|YP_003479687.1| - 0.22 11.4 3.9 12 5.8 0.1 3.3 4 0 0 4 4 4 0 NTPase IstB_IS21 PF01695.17 gi|289581221|ref|YP_003479687.1| - 0.26 11.0 0.6 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_10 PF13237.6 gi|289581221|ref|YP_003479687.1| - 0.42 10.8 12.8 0.59 10.3 1.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289581221|ref|YP_003479687.1| - 0.72 10.0 8.3 1.3 9.2 8.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289581221|ref|YP_003479687.1| - 1.4 9.1 11.0 0.13 12.4 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|289581221|ref|YP_003479687.1| - 1.4 9.1 11.0 3.2 8.0 11.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Methyltransf_11 PF08241.12 gi|289581223|ref|YP_003479689.1| - 2.4e-12 47.3 0.1 5e-12 46.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289581223|ref|YP_003479689.1| - 2.9e-08 33.7 0.0 4.5e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289581223|ref|YP_003479689.1| - 5.5e-08 33.4 0.1 3.1e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289581223|ref|YP_003479689.1| - 0.00022 21.9 0.0 0.00057 20.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289581223|ref|YP_003479689.1| - 0.00036 19.9 0.0 0.0011 18.3 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Peptidase_M54 PF07998.11 gi|289581224|ref|YP_003479690.1| - 5.9e-22 78.6 0.0 7.3e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|289581224|ref|YP_003479690.1| - 8.3e-07 28.9 0.0 1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|289581224|ref|YP_003479690.1| - 0.00037 20.4 0.0 0.0004 20.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.6 gi|289581224|ref|YP_003479690.1| - 0.00068 19.6 0.1 0.00086 19.3 0.1 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|289581224|ref|YP_003479690.1| - 0.0016 19.0 0.0 0.002 18.7 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|289581224|ref|YP_003479690.1| - 0.0019 17.2 0.0 0.0025 16.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_5 PF13688.6 gi|289581224|ref|YP_003479690.1| - 0.003 17.7 0.0 0.0032 17.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF4953 PF16313.5 gi|289581224|ref|YP_003479690.1| - 0.013 14.7 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Met-zincin UPF0146 PF03686.13 gi|289581225|ref|YP_003479691.1| - 1.6e-32 112.1 0.1 1.8e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) HEM4 PF02602.15 gi|289581225|ref|YP_003479691.1| - 0.027 13.8 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Methyltransf_23 PF13489.6 gi|289581225|ref|YP_003479691.1| - 0.086 12.7 0.0 0.089 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF3267 PF11667.8 gi|289581226|ref|YP_003479692.1| - 7.5e-11 42.3 0.1 7.5e-11 42.3 0.1 3.7 1 1 2 3 3 3 1 Putative zincin peptidase Peptidase_M50B PF13398.6 gi|289581226|ref|YP_003479692.1| - 0.00086 19.0 5.5 0.00086 19.0 5.5 2.4 1 1 1 2 2 2 1 Peptidase M50B-like Peptidase_M50 PF02163.22 gi|289581226|ref|YP_003479692.1| - 0.005 16.2 0.1 0.012 14.9 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M50 Peptidase_M36 PF02128.15 gi|289581226|ref|YP_003479692.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) DUF2749 PF10907.8 gi|289581226|ref|YP_003479692.1| - 0.73 10.1 2.6 2.1 8.6 2.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Hydrolase PF00702.26 gi|289581227|ref|YP_003479693.1| - 1.5e-12 48.3 1.2 2.5e-12 47.5 1.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|289581227|ref|YP_003479693.1| - 5.1e-09 36.5 0.0 2e-07 31.2 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289581227|ref|YP_003479693.1| - 1.4e-07 32.1 1.9 8.6e-06 26.3 0.1 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289581227|ref|YP_003479693.1| - 4.8e-05 23.3 1.1 0.00018 21.5 0.3 2.4 2 1 0 2 2 2 1 HAD-hyrolase-like DAO PF01266.24 gi|289581228|ref|YP_003479694.1| - 4.4e-51 174.5 5.0 6.7e-51 173.9 5.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|289581228|ref|YP_003479694.1| - 8.9e-14 51.2 0.0 1.7e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Pyr_redox_2 PF07992.14 gi|289581228|ref|YP_003479694.1| - 4.7e-08 32.6 0.8 8.1e-07 28.5 0.8 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289581228|ref|YP_003479694.1| - 1.2e-06 28.6 1.1 6.3e-06 26.3 1.1 2.2 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|289581228|ref|YP_003479694.1| - 2.1e-06 27.1 3.3 4.2e-06 26.1 3.3 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|289581228|ref|YP_003479694.1| - 2.6e-06 26.9 0.5 0.0094 15.2 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|289581228|ref|YP_003479694.1| - 4e-06 26.3 0.5 6.2e-06 25.7 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|289581228|ref|YP_003479694.1| - 7e-06 25.0 0.1 0.00091 18.0 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|289581228|ref|YP_003479694.1| - 0.0006 19.3 3.0 0.0066 15.8 3.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|289581228|ref|YP_003479694.1| - 0.0018 17.6 0.3 0.34 10.1 0.1 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|289581228|ref|YP_003479694.1| - 0.0024 17.1 0.1 0.0041 16.4 0.1 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|289581228|ref|YP_003479694.1| - 0.0055 17.2 0.1 0.029 14.9 0.2 2.2 3 0 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289581228|ref|YP_003479694.1| - 0.024 13.7 0.9 0.07 12.2 0.7 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|289581228|ref|YP_003479694.1| - 0.065 13.2 2.6 7.6 6.5 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|289581228|ref|YP_003479694.1| - 0.11 11.6 0.2 0.18 10.8 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein GDPD PF03009.17 gi|289581231|ref|YP_003479697.1| - 2.9e-21 76.4 0.0 6e-21 75.3 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Tn7_Tnp_TnsA_C PF08721.11 gi|289581232|ref|YP_003479698.1| - 0.091 13.4 0.2 0.79 10.4 0.0 2.0 2 0 0 2 2 2 0 TnsA endonuclease C terminal ZapA PF05164.13 gi|289581232|ref|YP_003479698.1| - 0.53 10.7 4.4 0.21 12.1 0.8 1.9 1 1 1 2 2 2 0 Cell division protein ZapA FUSC PF04632.12 gi|289581232|ref|YP_003479698.1| - 1.3 7.5 3.1 1.4 7.3 3.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family CARDB PF07705.11 gi|289581233|ref|YP_003479699.1| - 0.00013 22.2 2.6 0.015 15.5 0.5 2.8 2 0 0 2 2 2 2 CARDB DUF11 PF01345.18 gi|289581233|ref|YP_003479699.1| - 0.0062 16.8 1.2 0.0062 16.8 1.2 3.3 4 0 0 4 4 4 1 Domain of unknown function DUF11 ASH PF15780.5 gi|289581233|ref|YP_003479699.1| - 0.053 13.7 4.6 0.76 10.0 0.1 3.1 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin F420_oxidored PF03807.17 gi|289581234|ref|YP_003479700.1| - 5.8e-20 71.7 0.0 1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|289581234|ref|YP_003479700.1| - 1.8e-05 24.4 0.0 2.3e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|289581234|ref|YP_003479700.1| - 4.8e-05 23.6 0.0 0.00011 22.5 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|289581234|ref|YP_003479700.1| - 0.0052 16.8 0.0 0.0093 15.9 0.0 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|289581234|ref|YP_003479700.1| - 0.0071 15.4 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|289581234|ref|YP_003479700.1| - 0.013 15.9 0.0 0.026 15.0 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.10 gi|289581234|ref|YP_003479700.1| - 0.08 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 KR domain Shikimate_DH PF01488.20 gi|289581234|ref|YP_003479700.1| - 0.096 12.7 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Thioredoxin PF00085.20 gi|289581235|ref|YP_003479701.1| - 6.1e-22 77.6 0.0 7e-22 77.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|289581235|ref|YP_003479701.1| - 6.4e-08 33.0 0.3 4.8e-07 30.2 0.3 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|289581235|ref|YP_003479701.1| - 1.6e-05 25.2 0.0 0.0032 17.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|289581235|ref|YP_003479701.1| - 8.5e-05 22.5 0.0 9.1e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|289581235|ref|YP_003479701.1| - 0.00045 20.2 0.0 0.00052 20.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|289581235|ref|YP_003479701.1| - 0.00053 19.7 0.0 0.00061 19.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|289581235|ref|YP_003479701.1| - 0.0015 18.9 0.1 0.0019 18.5 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|289581235|ref|YP_003479701.1| - 0.0021 17.8 0.3 0.23 11.1 0.1 2.0 1 1 1 2 2 2 2 Redoxin DSBA PF01323.20 gi|289581235|ref|YP_003479701.1| - 0.0029 17.4 0.2 0.098 12.4 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain AhpC-TSA PF00578.21 gi|289581235|ref|YP_003479701.1| - 0.0041 17.0 0.2 0.013 15.4 0.2 1.6 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_5 PF13743.6 gi|289581235|ref|YP_003479701.1| - 0.0049 16.6 0.0 0.0053 16.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|289581235|ref|YP_003479701.1| - 0.015 15.5 0.1 0.029 14.6 0.0 1.6 1 1 1 2 2 2 0 Glutaredoxin KaiB PF07689.12 gi|289581235|ref|YP_003479701.1| - 0.024 14.4 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 KaiB domain Sec61_beta PF03911.16 gi|289581236|ref|YP_003479702.1| - 7e-15 54.8 0.2 8.1e-15 54.6 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family SNO PF01174.19 gi|289581237|ref|YP_003479703.1| - 1.2e-48 165.4 0.0 1.5e-48 165.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|289581237|ref|YP_003479703.1| - 2.1e-08 34.0 0.0 3.9e-08 33.1 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|289581237|ref|YP_003479703.1| - 0.00066 19.4 0.0 0.0009 18.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|289581237|ref|YP_003479703.1| - 0.0052 16.6 0.0 0.049 13.4 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|289581237|ref|YP_003479703.1| - 0.036 13.9 0.1 0.061 13.1 0.1 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family BPL_N PF09825.9 gi|289581237|ref|YP_003479703.1| - 0.2 10.7 0.0 0.76 8.8 0.0 1.8 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal DNase-RNase PF02577.14 gi|289581238|ref|YP_003479704.1| - 1.7e-36 124.7 0.0 1.9e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease PRA-PH PF01503.17 gi|289581239|ref|YP_003479705.1| - 1.7e-16 60.4 4.1 1.9e-16 60.3 4.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|289581239|ref|YP_003479705.1| - 0.0017 18.5 6.5 0.0027 17.8 6.5 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DUF326 PF03860.16 gi|289581240|ref|YP_003479706.1| - 5.4e-10 38.9 50.8 0.00052 19.9 7.7 4.6 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) YdjC PF04794.12 gi|289581240|ref|YP_003479706.1| - 0.038 14.0 0.1 0.042 13.8 0.1 1.2 1 0 0 1 1 1 0 YdjC-like protein EBP PF05241.12 gi|289581241|ref|YP_003479707.1| - 0.45 9.9 5.0 0.73 9.3 5.0 1.3 1 0 0 1 1 1 0 Emopamil binding protein DUF5518 PF17647.1 gi|289581242|ref|YP_003479708.1| - 2.3e-17 63.2 45.6 2.5e-17 63.1 45.6 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) NOG1_N PF17835.1 gi|289581243|ref|YP_003479709.1| - 1.3e-42 145.4 0.1 2.2e-42 144.8 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|289581243|ref|YP_003479709.1| - 7.7e-22 76.8 0.1 1.8e-21 75.6 0.1 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|289581243|ref|YP_003479709.1| - 2.4e-18 66.3 0.0 4.5e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|289581243|ref|YP_003479709.1| - 3e-10 39.8 0.0 5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|289581243|ref|YP_003479709.1| - 0.00031 20.7 0.0 0.0024 17.8 0.0 2.3 2 1 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|289581243|ref|YP_003479709.1| - 0.00079 19.5 1.0 2.1 8.4 0.0 3.2 2 1 1 3 3 3 2 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|289581243|ref|YP_003479709.1| - 0.0068 16.4 0.0 0.017 15.1 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|289581243|ref|YP_003479709.1| - 0.012 15.2 0.0 0.049 13.2 0.0 2.0 1 1 0 1 1 1 0 Ras family APP_E2 PF12925.7 gi|289581243|ref|YP_003479709.1| - 0.02 14.6 0.2 0.037 13.7 0.2 1.3 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein GTP_EFTU PF00009.27 gi|289581243|ref|YP_003479709.1| - 0.028 14.0 0.1 0.3 10.6 0.1 2.5 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|289581243|ref|YP_003479709.1| - 0.064 12.6 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 AIG1 family AAA_16 PF13191.6 gi|289581243|ref|YP_003479709.1| - 0.077 13.4 0.2 1.2 9.5 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain Arf PF00025.21 gi|289581243|ref|YP_003479709.1| - 0.14 11.6 0.0 0.58 9.6 0.0 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family Roc PF08477.13 gi|289581243|ref|YP_003479709.1| - 0.2 11.9 0.1 6.1 7.1 0.0 2.8 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase ABC2_membrane_3 PF12698.7 gi|289581244|ref|YP_003479710.1| - 0.023 13.8 1.2 0.028 13.5 1.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF389 PF04087.14 gi|289581245|ref|YP_003479711.1| - 3.7e-35 121.0 16.7 3.7e-35 121.0 16.7 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF2207 PF09972.9 gi|289581245|ref|YP_003479711.1| - 0.017 13.9 6.0 0.034 12.9 0.0 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) CPP1-like PF11833.8 gi|289581245|ref|YP_003479711.1| - 6.3 6.4 6.8 1.3 8.7 2.0 2.3 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like MMR_HSR1 PF01926.23 gi|289581246|ref|YP_003479712.1| - 2.8e-19 69.3 0.0 4.6e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|289581246|ref|YP_003479712.1| - 8.4e-14 51.4 0.1 1.7e-12 47.2 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|289581246|ref|YP_003479712.1| - 1.4e-06 28.0 0.2 4.2e-05 23.2 0.2 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|289581246|ref|YP_003479712.1| - 5.3e-05 23.2 0.4 0.031 14.2 0.2 2.6 2 1 0 2 2 2 2 RsgA GTPase ATP_bind_1 PF03029.17 gi|289581246|ref|YP_003479712.1| - 9.9e-05 22.2 0.8 0.0046 16.8 0.0 2.5 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|289581246|ref|YP_003479712.1| - 0.00024 21.2 0.1 0.051 13.6 0.2 2.3 1 1 1 2 2 2 1 Dynamin family AIG1 PF04548.16 gi|289581246|ref|YP_003479712.1| - 0.002 17.5 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Roc PF08477.13 gi|289581246|ref|YP_003479712.1| - 0.0023 18.2 0.1 0.011 16.0 0.0 2.1 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|289581246|ref|YP_003479712.1| - 0.0071 16.9 0.0 0.01 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRPRB PF09439.10 gi|289581246|ref|YP_003479712.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ABC_tran PF00005.27 gi|289581246|ref|YP_003479712.1| - 0.017 15.7 0.1 0.02 15.4 0.1 1.6 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|289581246|ref|YP_003479712.1| - 0.017 14.1 0.5 0.4 9.6 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|289581246|ref|YP_003479712.1| - 0.022 14.3 0.2 0.065 12.8 0.0 1.8 3 0 0 3 3 3 0 Ras family Arf PF00025.21 gi|289581246|ref|YP_003479712.1| - 0.022 14.2 0.0 0.58 9.6 0.0 2.3 2 1 0 2 2 2 0 ADP-ribosylation factor family AAA_22 PF13401.6 gi|289581246|ref|YP_003479712.1| - 0.027 14.8 0.5 0.58 10.4 0.1 2.9 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|289581246|ref|YP_003479712.1| - 0.081 13.3 0.2 0.43 11.0 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.9 gi|289581246|ref|YP_003479712.1| - 0.1 12.3 0.0 0.26 11.1 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|289581246|ref|YP_003479712.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|289581246|ref|YP_003479712.1| - 0.2 11.2 0.3 3.3 7.3 0.3 2.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|289581246|ref|YP_003479712.1| - 0.2 12.0 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase 2-Hacid_dh_C PF02826.19 gi|289581247|ref|YP_003479713.1| - 4.8e-51 172.6 0.0 6.3e-51 172.3 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|289581247|ref|YP_003479713.1| - 1.1e-05 25.1 0.0 1.3e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|289581247|ref|YP_003479713.1| - 0.00011 22.4 0.0 0.00019 21.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|289581247|ref|YP_003479713.1| - 0.00048 20.2 0.0 0.001 19.2 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|289581247|ref|YP_003479713.1| - 0.012 16.2 0.0 0.022 15.3 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|289581247|ref|YP_003479713.1| - 0.03 14.9 0.0 0.52 10.9 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.12 gi|289581247|ref|YP_003479713.1| - 0.18 11.3 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|289581247|ref|YP_003479713.1| - 0.4 10.5 1.3 0.89 9.4 0.8 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF-2B PF01008.17 gi|289581248|ref|YP_003479714.1| - 1.1e-46 159.3 2.6 1.5e-46 158.9 2.6 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|289581248|ref|YP_003479714.1| - 1.6e-07 31.4 0.1 3.8e-07 30.2 0.1 1.6 1 0 0 1 1 1 1 NUDIX domain Hydantoinase_A PF01968.18 gi|289581249|ref|YP_003479715.1| - 3.1e-93 312.2 13.7 2.2e-76 256.9 2.7 3.3 3 0 0 3 3 3 3 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|289581249|ref|YP_003479715.1| - 2.7e-51 173.8 3.2 3.5e-51 173.4 0.2 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region DUF294 PF03445.13 gi|289581249|ref|YP_003479715.1| - 0.089 12.6 0.4 0.26 11.1 0.1 2.0 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 Herpes_LMP1 PF05297.11 gi|289581249|ref|YP_003479715.1| - 8.4 5.5 8.1 12 4.9 8.1 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Hydantoinase_B PF02538.14 gi|289581250|ref|YP_003479716.1| - 8.7e-209 694.2 6.6 9.9e-209 694.0 6.6 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF5518 PF17647.1 gi|289581251|ref|YP_003479717.1| - 6.4e-12 45.7 19.5 7.7e-12 45.4 19.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) COPI_assoc PF08507.10 gi|289581252|ref|YP_003479718.1| - 0.016 15.3 0.7 0.019 15.0 0.7 1.2 1 0 0 1 1 1 0 COPI associated protein Virul_fac_BrkB PF03631.15 gi|289581252|ref|YP_003479718.1| - 0.027 14.1 4.5 0.032 13.8 4.5 1.1 1 0 0 1 1 1 0 Virulence factor BrkB MotA_ExbB PF01618.16 gi|289581252|ref|YP_003479718.1| - 0.18 11.5 2.4 7.4 6.3 0.1 2.1 1 1 1 2 2 2 0 MotA/TolQ/ExbB proton channel family F420_ligase PF01996.16 gi|289581253|ref|YP_003479719.1| - 4.8e-61 206.2 0.0 5.7e-61 206.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|289581254|ref|YP_003479720.1| - 7.7e-65 219.4 6.5 1e-64 218.9 6.5 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Gram_pos_anchor PF00746.21 gi|289581255|ref|YP_003479721.1| - 8.3 6.5 10.0 44 4.1 10.0 1.9 1 1 0 1 1 1 0 LPXTG cell wall anchor motif Trypan_PARP PF05887.11 gi|289581256|ref|YP_003479722.1| - 0.0031 17.5 6.6 0.0042 17.1 6.6 1.4 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Nudix_N_2 PF14803.6 gi|289581256|ref|YP_003479722.1| - 0.095 12.6 1.2 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|289581256|ref|YP_003479722.1| - 0.11 12.4 0.6 0.22 11.4 0.6 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|289581256|ref|YP_003479722.1| - 0.17 12.1 1.1 0.26 11.5 1.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RRN7 PF11781.8 gi|289581256|ref|YP_003479722.1| - 0.78 9.5 4.1 2.3 8.0 4.1 1.7 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|289581256|ref|YP_003479722.1| - 1.5 8.6 5.3 21 4.9 5.3 2.4 1 1 0 1 1 1 0 Rubredoxin metal binding domain AF-4 PF05110.13 gi|289581256|ref|YP_003479722.1| - 5.7 4.9 11.6 5.8 4.9 11.6 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein CSD PF00313.22 gi|289581257|ref|YP_003479723.1| - 5.6e-20 71.0 0.1 6.1e-20 70.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|289581257|ref|YP_003479723.1| - 0.024 14.3 1.5 0.031 13.9 1.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|289581257|ref|YP_003479723.1| - 0.092 12.7 0.9 0.12 12.3 0.9 1.4 1 1 0 1 1 1 0 S1-like AAA_3 PF07726.11 gi|289581258|ref|YP_003479724.1| - 9.4e-60 200.2 0.1 2.1e-59 199.0 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|289581258|ref|YP_003479724.1| - 5.1e-19 67.9 2.3 2.8e-18 65.5 1.7 2.3 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|289581258|ref|YP_003479724.1| - 1.2e-12 48.0 0.0 2.5e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|289581258|ref|YP_003479724.1| - 1.3e-06 28.2 0.0 0.00058 19.6 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|289581258|ref|YP_003479724.1| - 2.9e-06 27.8 0.0 1.8e-05 25.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|289581258|ref|YP_003479724.1| - 1.9e-05 23.9 0.0 3.9e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|289581258|ref|YP_003479724.1| - 4.9e-05 22.8 0.0 0.0064 15.9 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|289581258|ref|YP_003479724.1| - 0.00058 19.6 0.0 0.0044 16.8 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|289581258|ref|YP_003479724.1| - 0.035 14.2 0.0 0.14 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MCM_lid PF17855.1 gi|289581258|ref|YP_003479724.1| - 0.04 14.3 0.1 0.1 13.0 0.1 1.7 1 1 1 2 2 2 0 MCM AAA-lid domain DUF58 PF01882.18 gi|289581259|ref|YP_003479725.1| - 1.2e-13 51.1 0.7 3.4e-13 49.7 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 Transglut_core PF01841.19 gi|289581260|ref|YP_003479726.1| - 1.1e-28 99.9 0.1 2.8e-28 98.6 0.1 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|289581260|ref|YP_003479726.1| - 1.1e-08 35.2 5.1 1.1e-08 35.2 5.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|289581260|ref|YP_003479726.1| - 0.0005 19.1 0.1 0.0005 19.1 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.6 gi|289581260|ref|YP_003479726.1| - 0.0069 16.3 0.3 0.046 13.6 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF872 PF05915.12 gi|289581260|ref|YP_003479726.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) SPESP1 PF15754.5 gi|289581260|ref|YP_003479726.1| - 0.27 10.4 1.4 0.52 9.4 1.4 1.4 1 0 0 1 1 1 0 Sperm equatorial segment protein 1 SUI1 PF01253.22 gi|289581261|ref|YP_003479727.1| - 3.9e-22 78.6 0.0 4.7e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|289581261|ref|YP_003479727.1| - 0.0022 18.3 0.0 0.0028 17.9 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|289581261|ref|YP_003479727.1| - 0.0081 15.9 0.4 0.01 15.6 0.4 1.1 1 0 0 1 1 1 1 DTW domain Rhodanese PF00581.20 gi|289581262|ref|YP_003479728.1| - 5.3e-12 46.2 0.0 6.4e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|289581264|ref|YP_003479730.1| - 1.3e-14 54.4 1.0 2.5e-14 53.5 1.0 1.5 1 0 0 1 1 1 1 NUDIX domain NUDIX PF00293.28 gi|289581265|ref|YP_003479731.1| - 2.4e-14 53.5 0.2 3.3e-14 53.0 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain DUF659 PF04937.15 gi|289581266|ref|YP_003479732.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) DUF2267 PF10025.9 gi|289581266|ref|YP_003479732.1| - 0.3 11.3 5.3 1.9 8.8 5.3 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) zf-C2H2_9 PF16293.5 gi|289581267|ref|YP_003479733.1| - 0.0012 18.6 0.5 0.0026 17.6 0.1 1.7 2 0 0 2 2 2 1 C2H2 type zinc-finger (1 copy) zf-Di19 PF05605.12 gi|289581267|ref|YP_003479733.1| - 0.11 12.8 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding AF-4 PF05110.13 gi|289581267|ref|YP_003479733.1| - 0.17 9.9 12.2 0.2 9.7 12.2 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein SR-25 PF10500.9 gi|289581267|ref|YP_003479733.1| - 0.68 9.5 10.7 0.84 9.2 10.7 1.1 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein Acetyltransf_1 PF00583.25 gi|289581268|ref|YP_003479734.1| - 1.6e-16 60.6 0.0 2e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289581268|ref|YP_003479734.1| - 5.1e-12 45.8 0.0 5.7e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289581268|ref|YP_003479734.1| - 4.4e-10 39.9 0.0 6.5e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289581268|ref|YP_003479734.1| - 2.3e-06 27.5 0.0 6.5e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|289581268|ref|YP_003479734.1| - 7.6e-06 26.0 0.0 2.9e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|289581268|ref|YP_003479734.1| - 0.0048 16.6 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289581268|ref|YP_003479734.1| - 0.0078 16.4 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|289581268|ref|YP_003479734.1| - 0.018 15.2 0.1 0.024 14.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289581268|ref|YP_003479734.1| - 0.15 12.7 0.0 0.26 12.0 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF5069 PF16798.5 gi|289581269|ref|YP_003479735.1| - 0.01 16.1 0.2 0.012 15.8 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5069) TPR_9 PF13371.6 gi|289581269|ref|YP_003479735.1| - 0.023 14.8 0.1 0.04 14.1 0.1 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat LapA_dom PF06305.11 gi|289581269|ref|YP_003479735.1| - 0.042 13.7 0.3 0.061 13.1 0.3 1.3 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Tox-REase-3 PF15647.6 gi|289581269|ref|YP_003479735.1| - 0.065 13.5 0.0 0.082 13.2 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 3 SNF PF00209.18 gi|289581270|ref|YP_003479736.1| - 3.6e-57 194.2 31.0 4.4e-29 101.6 13.9 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family DUF892 PF05974.12 gi|289581271|ref|YP_003479737.1| - 1.6e-44 151.8 9.8 1.8e-44 151.6 9.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|289581271|ref|YP_003479737.1| - 0.0067 16.4 11.7 0.015 15.2 11.7 1.7 1 1 0 1 1 1 1 Ferritin-like domain Vir_act_alpha_C PF10400.9 gi|289581271|ref|YP_003479737.1| - 0.017 15.8 6.5 1.4 9.6 1.5 2.5 2 1 0 2 2 2 0 Virulence activator alpha C-term MerR-DNA-bind PF09278.11 gi|289581271|ref|YP_003479737.1| - 0.1 13.2 6.5 0.12 12.9 1.8 2.7 3 1 0 3 3 3 0 MerR, DNA binding DUF2383 PF09537.10 gi|289581271|ref|YP_003479737.1| - 0.18 12.2 5.1 0.78 10.1 0.4 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) Homeodomain PF00046.29 gi|289581271|ref|YP_003479737.1| - 0.23 11.4 1.1 1.3 8.9 0.1 2.7 3 1 1 4 4 4 0 Homeodomain EF-hand_like PF09279.11 gi|289581271|ref|YP_003479737.1| - 2.2 8.8 8.6 9.9 6.7 0.8 2.4 1 1 0 2 2 2 0 Phosphoinositide-specific phospholipase C, efhand-like BssS PF13991.6 gi|289581272|ref|YP_003479738.1| - 0.038 14.0 0.1 0.054 13.6 0.1 1.4 1 1 0 1 1 1 0 BssS protein family COMM_domain PF07258.14 gi|289581272|ref|YP_003479738.1| - 0.13 12.4 0.1 0.21 11.7 0.1 1.4 1 1 0 1 1 1 0 COMM domain NIR_SIR PF01077.22 gi|289581273|ref|YP_003479739.1| - 2.4e-43 147.4 0.0 1.8e-34 118.5 0.1 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|289581273|ref|YP_003479739.1| - 1.5e-32 111.3 0.3 1.1e-14 54.0 0.0 3.4 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF3915 PF13054.6 gi|289581276|ref|YP_003479742.1| - 0.0048 16.9 2.3 0.0096 15.9 2.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3915) RSB_motif PF16294.5 gi|289581276|ref|YP_003479742.1| - 1.7 9.0 10.9 3.1 8.1 10.9 1.3 1 0 0 1 1 1 0 RNSP1-SAP18 binding (RSB) motif Phage_integrase PF00589.22 gi|289581277|ref|YP_003479743.1| - 4.4e-11 42.9 0.0 1e-10 41.6 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family DZR PF12773.7 gi|289581277|ref|YP_003479743.1| - 0.00075 19.5 0.4 0.0014 18.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289581277|ref|YP_003479743.1| - 0.023 14.4 2.0 0.041 13.6 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|289581277|ref|YP_003479743.1| - 0.16 12.7 0.2 0.27 12.0 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon family DnaJ_CXXCXGXG PF00684.19 gi|289581280|ref|YP_003479746.1| - 0.0027 18.0 6.1 0.33 11.3 1.6 2.0 1 1 1 2 2 2 2 DnaJ central domain FYVE PF01363.21 gi|289581282|ref|YP_003479748.1| - 0.00054 20.1 1.7 0.00084 19.4 1.7 1.3 1 0 0 1 1 1 1 FYVE zinc finger zf-dskA_traR PF01258.17 gi|289581282|ref|YP_003479748.1| - 0.021 14.8 2.9 2.7 8.0 0.1 2.6 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2072 PF09845.9 gi|289581283|ref|YP_003479749.1| - 0.0006 20.1 0.0 0.0006 20.1 0.0 3.1 3 1 0 3 3 3 1 Zn-ribbon containing protein zinc_ribbon_2 PF13240.6 gi|289581283|ref|YP_003479749.1| - 0.004 16.8 5.0 0.004 16.8 5.0 3.4 3 0 0 3 3 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581283|ref|YP_003479749.1| - 0.01 16.0 1.9 0.01 16.0 1.9 5.4 5 2 1 6 6 6 0 Zinc ribbon domain HypA PF01155.19 gi|289581283|ref|YP_003479749.1| - 0.025 14.6 1.5 0.025 14.6 1.5 4.4 3 1 1 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE_2 PF02318.16 gi|289581283|ref|YP_003479749.1| - 0.073 13.3 5.9 3.3 8.0 0.0 3.6 3 0 0 3 3 3 0 FYVE-type zinc finger zf-C2H2 PF00096.26 gi|289581283|ref|YP_003479749.1| - 0.36 11.4 0.0 0.36 11.4 0.0 5.8 6 1 0 6 6 6 0 Zinc finger, C2H2 type RHH_1 PF01402.21 gi|289581286|ref|YP_003479752.1| - 5.5e-05 22.9 0.4 7.6e-05 22.5 0.4 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3491 PF11996.8 gi|289581286|ref|YP_003479752.1| - 0.022 12.6 0.0 0.025 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3491) RHH_3 PF12651.7 gi|289581286|ref|YP_003479752.1| - 0.088 12.8 0.2 0.42 10.6 0.2 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix domain PBECR2 PF18810.1 gi|289581286|ref|YP_003479752.1| - 0.089 13.1 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Thg1 PF04446.12 gi|289581288|ref|YP_003479754.1| - 0.0054 16.8 0.5 0.72 9.9 0.0 2.3 1 1 1 2 2 2 2 tRNAHis guanylyltransferase PIN PF01850.21 gi|289581288|ref|YP_003479754.1| - 0.02 15.4 0.6 0.053 14.0 0.2 2.2 2 1 0 2 2 2 0 PIN domain CemA PF03040.14 gi|289581288|ref|YP_003479754.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 CemA family DUF1217 PF06748.12 gi|289581289|ref|YP_003479755.1| - 0.0048 17.0 0.2 0.0086 16.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1217) HTH_25 PF13413.6 gi|289581289|ref|YP_003479755.1| - 0.017 15.0 2.2 0.62 10.0 0.1 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain IBR PF01485.21 gi|289581290|ref|YP_003479756.1| - 0.013 15.7 0.1 0.024 14.9 0.1 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain NurA PF09376.10 gi|289581290|ref|YP_003479756.1| - 0.016 14.9 0.0 0.63 9.7 0.0 3.0 2 2 0 2 2 2 0 NurA domain DUF87 PF01935.17 gi|289581291|ref|YP_003479757.1| - 4.6e-11 43.3 0.0 1.6e-09 38.2 0.0 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain LVIVD PF08309.11 gi|289581291|ref|YP_003479757.1| - 0.0016 17.7 1.1 0.59 9.5 0.2 2.4 2 0 0 2 2 2 2 LVIVD repeat N6_N4_Mtase PF01555.18 gi|289581292|ref|YP_003479758.1| - 5.1e-19 68.9 0.0 6.3e-09 35.9 0.0 2.3 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|289581292|ref|YP_003479758.1| - 6.2e-07 29.3 0.0 0.0011 18.7 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|289581292|ref|YP_003479758.1| - 0.00068 20.2 0.1 0.018 15.7 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain RNR_Alpha PF17975.1 gi|289581292|ref|YP_003479758.1| - 0.0035 17.8 0.0 0.014 15.9 0.0 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase alpha domain MethyltransfD12 PF02086.15 gi|289581292|ref|YP_003479758.1| - 0.0039 16.9 0.2 0.024 14.3 0.0 2.2 3 0 0 3 3 3 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.6 gi|289581292|ref|YP_003479758.1| - 0.011 16.4 0.0 0.083 13.6 0.0 2.4 3 0 0 3 3 3 0 Methyltransferase domain HTH_24 PF13412.6 gi|289581293|ref|YP_003479759.1| - 2.7e-07 30.0 0.0 4.5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289581293|ref|YP_003479759.1| - 0.0005 19.9 0.0 0.00069 19.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|289581293|ref|YP_003479759.1| - 0.0098 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|289581293|ref|YP_003479759.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RelB_N PF18506.1 gi|289581293|ref|YP_003479759.1| - 0.025 14.4 0.2 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 RelB Antitoxin alpha helical domain HTH_45 PF14947.6 gi|289581293|ref|YP_003479759.1| - 0.026 14.5 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|289581293|ref|YP_003479759.1| - 0.038 13.9 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|289581293|ref|YP_003479759.1| - 0.059 13.4 0.0 0.082 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF5606 PF18347.1 gi|289581293|ref|YP_003479759.1| - 0.1 12.8 0.0 5.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5606) HTH_AsnC-type PF13404.6 gi|289581293|ref|YP_003479759.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AAA_16 PF13191.6 gi|289581294|ref|YP_003479760.1| - 3.1e-08 34.2 5.1 2.9e-07 31.0 2.5 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581294|ref|YP_003479760.1| - 2.4e-07 31.1 0.0 6.8e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|289581294|ref|YP_003479760.1| - 1.1e-06 29.1 0.0 2.5e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|289581294|ref|YP_003479760.1| - 0.00078 19.2 0.0 0.011 15.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|289581294|ref|YP_003479760.1| - 0.0015 18.1 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|289581294|ref|YP_003479760.1| - 0.0016 18.5 0.0 0.0056 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|289581294|ref|YP_003479760.1| - 0.0021 17.3 0.0 0.0047 16.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|289581294|ref|YP_003479760.1| - 0.0027 17.4 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|289581294|ref|YP_003479760.1| - 0.0079 16.1 0.4 0.039 13.8 0.0 2.3 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|289581294|ref|YP_003479760.1| - 0.022 15.1 0.0 0.048 14.0 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|289581294|ref|YP_003479760.1| - 0.025 14.6 0.0 0.069 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Ald_deCOase PF11266.8 gi|289581294|ref|YP_003479760.1| - 0.035 13.8 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 Long-chain fatty aldehyde decarbonylase TsaE PF02367.17 gi|289581294|ref|YP_003479760.1| - 0.039 13.9 0.0 0.1 12.6 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cdc6_C PF09079.11 gi|289581294|ref|YP_003479760.1| - 0.064 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain AAA_18 PF13238.6 gi|289581294|ref|YP_003479760.1| - 0.079 13.5 0.1 1.1 9.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|289581294|ref|YP_003479760.1| - 0.083 13.2 0.0 0.17 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|289581294|ref|YP_003479760.1| - 0.11 13.1 0.0 0.56 10.7 0.0 2.1 1 1 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|289581294|ref|YP_003479760.1| - 0.11 12.1 0.0 0.33 10.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|289581294|ref|YP_003479760.1| - 0.12 12.1 0.0 0.36 10.6 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NitrOD1 PF18549.1 gi|289581294|ref|YP_003479760.1| - 0.15 12.1 0.0 0.48 10.4 0.0 1.8 2 0 0 2 2 2 0 Nitrosopumilus output domain 1 NACHT PF05729.12 gi|289581294|ref|YP_003479760.1| - 0.17 11.8 0.0 0.33 10.8 0.0 1.6 1 1 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|289581294|ref|YP_003479760.1| - 0.2 11.4 0.3 6.4 6.5 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase DUF3426 PF11906.8 gi|289581295|ref|YP_003479761.1| - 2.4e-06 27.8 0.0 0.00042 20.5 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3426) GbpC PF08363.10 gi|289581295|ref|YP_003479761.1| - 0.016 14.6 0.3 0.97 8.8 0.0 2.3 2 0 0 2 2 2 0 Glucan-binding protein C DUF3157 PF11355.8 gi|289581295|ref|YP_003479761.1| - 0.044 13.4 0.2 0.1 12.2 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3157) DUF5643 PF18705.1 gi|289581295|ref|YP_003479761.1| - 0.049 13.6 2.9 2.1 8.4 0.5 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5643) DUF4352 PF11611.8 gi|289581295|ref|YP_003479761.1| - 0.054 13.8 2.6 1.8 8.9 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4352) IncE PF17627.2 gi|289581296|ref|YP_003479762.1| - 0.014 15.4 1.1 0.014 15.4 1.1 1.7 1 1 1 2 2 2 0 Inclusion membrane protein E UPF0060 PF02694.15 gi|289581296|ref|YP_003479762.1| - 0.029 14.6 0.9 0.029 14.6 0.9 2.0 1 1 1 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family NADH5_C PF06455.11 gi|289581296|ref|YP_003479762.1| - 9 5.8 9.4 1.8 8.1 3.5 2.2 1 1 0 2 2 2 0 NADH dehydrogenase subunit 5 C-terminus Y_Y_Y PF07495.13 gi|289581297|ref|YP_003479763.1| - 0.0018 18.2 0.0 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 Y_Y_Y domain CarboxypepD_reg PF13620.6 gi|289581297|ref|YP_003479763.1| - 0.0028 17.9 1.3 0.0061 16.8 0.0 2.2 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|289581297|ref|YP_003479763.1| - 0.028 14.2 1.3 0.056 13.2 0.0 2.1 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II CARDB PF07705.11 gi|289581302|ref|YP_003479768.1| - 1.8e-08 34.5 3.0 1.8e-08 34.5 3.0 3.3 3 0 0 3 3 3 1 CARDB PGF-CTERM PF18204.1 gi|289581302|ref|YP_003479768.1| - 1.4e-06 28.0 5.9 3.5e-06 26.8 5.9 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF1616 PF07760.11 gi|289581302|ref|YP_003479768.1| - 0.58 9.5 4.1 0.43 9.9 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1616) Y_Y_Y PF07495.13 gi|289581303|ref|YP_003479769.1| - 0.0014 18.5 0.1 1.8 8.6 0.0 3.5 3 0 0 3 3 3 2 Y_Y_Y domain fn3 PF00041.21 gi|289581303|ref|YP_003479769.1| - 0.0026 18.0 7.2 0.085 13.2 0.0 4.2 4 0 0 4 4 4 2 Fibronectin type III domain fn3 PF00041.21 gi|289581304|ref|YP_003479770.1| - 3e-13 49.9 10.4 0.0039 17.5 1.4 4.5 4 1 0 4 4 4 4 Fibronectin type III domain RGI_lyase PF18370.1 gi|289581304|ref|YP_003479770.1| - 0.0017 18.6 4.6 0.019 15.2 0.9 2.8 2 0 0 2 2 2 1 Rhamnogalacturonan I lyases beta-sheet domain PilX PF13681.6 gi|289581304|ref|YP_003479770.1| - 0.8 10.1 4.6 3.4 8.1 1.3 2.8 2 1 0 2 2 2 0 Type IV pilus assembly protein PilX C-term DUF1093 PF06486.11 gi|289581304|ref|YP_003479770.1| - 0.82 10.4 5.8 22 5.8 0.9 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1093) Laminin_G_3 PF13385.6 gi|289581305|ref|YP_003479771.1| - 7.4e-26 91.1 0.8 1.7e-25 90.0 0.2 1.8 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily CarboxypepD_reg PF13620.6 gi|289581305|ref|YP_003479771.1| - 7e-05 23.0 0.4 0.00014 22.0 0.4 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|289581305|ref|YP_003479771.1| - 0.00013 22.2 0.1 0.00035 20.8 0.1 1.7 1 0 0 1 1 1 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|289581305|ref|YP_003479771.1| - 0.00085 19.3 0.1 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain Laminin_G_2 PF02210.24 gi|289581305|ref|YP_003479771.1| - 0.0057 17.2 0.0 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Laminin G domain Rhomboid PF01694.22 gi|289581308|ref|YP_003479774.1| - 7e-14 52.1 14.3 1.2e-13 51.4 14.3 1.3 1 0 0 1 1 1 1 Rhomboid family Hemagglutinin PF00509.18 gi|289581309|ref|YP_003479775.1| - 0.3 9.5 1.4 0.32 9.4 0.0 1.6 2 0 0 2 2 2 0 Haemagglutinin PEP-utilisers_N PF05524.13 gi|289581309|ref|YP_003479775.1| - 0.79 9.9 4.2 19 5.5 0.8 2.7 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal DivIC PF04977.15 gi|289581310|ref|YP_003479776.1| - 0.14 11.9 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Septum formation initiator Tcp10_C PF07202.13 gi|289581311|ref|YP_003479777.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 T-complex protein 10 C-terminus DUF2283 PF10049.9 gi|289581315|ref|YP_003479781.1| - 0.065 13.5 0.0 0.094 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Peptidase_S78 PF04586.17 gi|289581318|ref|YP_003479784.1| - 3e-06 27.5 0.0 5e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Caudovirus prohead serine protease AAA_13 PF13166.6 gi|289581318|ref|YP_003479784.1| - 0.016 13.9 0.1 0.024 13.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain Phage_portal PF04860.12 gi|289581319|ref|YP_003479785.1| - 8e-09 35.1 0.0 1.1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Phage portal protein KTSC PF13619.6 gi|289581320|ref|YP_003479786.1| - 1.2e-18 66.6 1.3 1.9e-18 66.0 1.3 1.3 1 0 0 1 1 1 1 KTSC domain OrfB_Zn_ribbon PF07282.11 gi|289581321|ref|YP_003479787.1| - 9.1e-05 22.3 1.4 0.00024 21.0 1.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Terminase_6 PF03237.15 gi|289581321|ref|YP_003479787.1| - 0.00081 19.1 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 Terminase-like family TF_Zn_Ribbon PF08271.12 gi|289581321|ref|YP_003479787.1| - 0.0018 17.8 2.2 0.0044 16.5 2.2 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding AAA_30 PF13604.6 gi|289581321|ref|YP_003479787.1| - 0.007 16.1 0.0 0.028 14.1 0.0 2.1 3 1 0 3 3 3 1 AAA domain Zn_Tnp_IS1595 PF12760.7 gi|289581321|ref|YP_003479787.1| - 0.063 13.3 0.9 0.15 12.0 0.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289581321|ref|YP_003479787.1| - 0.074 12.5 1.8 0.58 9.7 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|289581321|ref|YP_003479787.1| - 0.075 13.4 0.4 0.17 12.3 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|289581321|ref|YP_003479787.1| - 0.1 12.6 0.6 0.23 11.5 0.6 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|289581321|ref|YP_003479787.1| - 0.21 10.9 2.4 0.51 9.7 2.4 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|289581321|ref|YP_003479787.1| - 0.88 9.7 3.9 3.4 7.9 0.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|289581325|ref|YP_003479791.1| - 0.00049 19.6 1.1 0.00082 18.9 1.1 1.4 1 0 0 1 1 1 1 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|289581325|ref|YP_003479791.1| - 0.028 13.8 0.6 0.047 13.1 0.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|289581325|ref|YP_003479791.1| - 0.06 13.3 0.4 0.073 13.0 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|289581325|ref|YP_003479791.1| - 0.07 12.9 0.7 0.076 12.8 0.0 1.5 2 0 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.21 gi|289581328|ref|YP_003479794.1| - 0.031 14.4 0.1 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 FYVE zinc finger MarR PF01047.22 gi|289581329|ref|YP_003479795.1| - 8e-05 22.5 0.0 0.0001 22.1 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_43 PF09904.9 gi|289581329|ref|YP_003479795.1| - 0.00053 19.9 0.0 0.00069 19.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|289581329|ref|YP_003479795.1| - 0.0025 17.4 0.1 0.0033 17.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|289581329|ref|YP_003479795.1| - 0.0028 17.5 0.0 0.0032 17.3 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|289581329|ref|YP_003479795.1| - 0.003 17.6 0.2 0.0039 17.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289581329|ref|YP_003479795.1| - 0.0032 17.3 0.3 0.0039 17.0 0.3 1.1 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|289581329|ref|YP_003479795.1| - 0.0076 16.1 0.2 0.009 15.9 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|289581329|ref|YP_003479795.1| - 0.028 14.4 0.1 0.033 14.2 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|289581329|ref|YP_003479795.1| - 0.029 13.9 0.1 0.038 13.5 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|289581329|ref|YP_003479795.1| - 0.032 14.0 0.1 0.039 13.7 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain RP-C PF03428.13 gi|289581329|ref|YP_003479795.1| - 0.034 13.8 0.1 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|289581329|ref|YP_003479795.1| - 0.049 14.0 0.0 0.062 13.6 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HxlR PF01638.17 gi|289581329|ref|YP_003479795.1| - 0.087 12.7 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|289581329|ref|YP_003479795.1| - 0.097 12.6 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 HTH domain Sulfolobus_pRN PF05584.11 gi|289581329|ref|YP_003479795.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_20 PF12840.7 gi|289581330|ref|YP_003479796.1| - 0.0087 16.1 0.9 0.034 14.2 0.3 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain TrmB PF01978.19 gi|289581330|ref|YP_003479796.1| - 0.043 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|289581330|ref|YP_003479796.1| - 0.046 13.7 0.1 0.28 11.2 0.1 2.1 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.20 gi|289581330|ref|YP_003479796.1| - 0.07 13.5 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|289581330|ref|YP_003479796.1| - 0.094 12.4 0.1 0.29 10.8 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HNH_3 PF13392.6 gi|289581331|ref|YP_003479797.1| - 3.1e-13 49.2 0.3 5.5e-13 48.5 0.3 1.4 1 0 0 1 1 1 1 HNH endonuclease HTH_Tnp_Tc3_2 PF01498.18 gi|289581331|ref|YP_003479797.1| - 7.8e-07 29.3 0.0 0.059 13.6 0.0 2.3 2 0 0 2 2 2 2 Transposase HTH_23 PF13384.6 gi|289581331|ref|YP_003479797.1| - 1.2e-05 24.9 0.5 0.037 13.8 0.0 2.9 3 1 0 3 3 3 2 Homeodomain-like domain Slx4 PF09494.10 gi|289581331|ref|YP_003479797.1| - 0.0003 20.7 0.1 0.32 11.0 0.0 2.4 2 0 0 2 2 2 2 Slx4 endonuclease DUF1804 PF08822.11 gi|289581331|ref|YP_003479797.1| - 0.00037 20.5 0.0 0.7 9.9 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1804) Ish1 PF10281.9 gi|289581331|ref|YP_003479797.1| - 0.00051 20.3 0.1 1.5 9.2 0.0 2.8 2 0 0 2 2 2 2 Putative stress-responsive nuclear envelope protein HTH_Tnp_ISL3 PF13542.6 gi|289581331|ref|YP_003479797.1| - 0.00087 18.6 0.0 0.28 10.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 YdaS_antitoxin PF15943.5 gi|289581331|ref|YP_003479797.1| - 0.0023 17.7 0.0 0.03 14.2 0.0 2.4 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TnsD PF15978.5 gi|289581331|ref|YP_003479797.1| - 0.0067 15.5 0.0 0.0095 15.0 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_33 PF13592.6 gi|289581331|ref|YP_003479797.1| - 0.022 14.4 0.0 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Met_gamma_lyase PF06838.11 gi|289581331|ref|YP_003479797.1| - 0.029 12.9 0.0 0.15 10.5 0.1 1.8 2 0 0 2 2 2 0 Methionine gamma-lyase HTH_11 PF08279.12 gi|289581331|ref|YP_003479797.1| - 0.031 14.2 0.0 4.4 7.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain Pro-kuma_activ PF09286.11 gi|289581331|ref|YP_003479797.1| - 0.032 14.5 0.2 3.6 7.9 0.2 2.4 1 1 1 2 2 2 0 Pro-kumamolisin, activation domain Sigma70_r4 PF04545.16 gi|289581331|ref|YP_003479797.1| - 0.049 13.2 0.0 0.24 10.9 0.0 2.1 3 0 0 3 3 3 0 Sigma-70, region 4 GerE PF00196.19 gi|289581331|ref|YP_003479797.1| - 0.055 13.0 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family CENP-B_N PF04218.13 gi|289581331|ref|YP_003479797.1| - 0.063 12.9 0.0 0.18 11.4 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain MarR PF01047.22 gi|289581331|ref|YP_003479797.1| - 0.066 13.2 0.0 12 6.0 0.0 2.3 2 0 0 2 2 2 0 MarR family Crp PF00325.20 gi|289581331|ref|YP_003479797.1| - 0.073 12.7 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF4224 PF13986.6 gi|289581331|ref|YP_003479797.1| - 0.093 12.6 0.2 91 3.1 0.0 3.9 4 0 0 4 4 3 0 Domain of unknown function (DUF4224) AbiEi_3_N PF17194.4 gi|289581331|ref|YP_003479797.1| - 0.13 12.3 0.0 6.3 6.9 0.0 2.8 1 1 2 3 3 3 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain DUF746 PF05344.11 gi|289581331|ref|YP_003479797.1| - 0.13 12.1 0.0 0.81 9.6 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 gi|289581331|ref|YP_003479797.1| - 0.18 11.8 0.0 12 5.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|289581334|ref|YP_003479800.1| - 4.4e-13 49.1 0.1 8.1e-13 48.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289581334|ref|YP_003479800.1| - 0.00043 20.0 0.1 0.00078 19.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289581334|ref|YP_003479800.1| - 0.0013 18.6 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|289581334|ref|YP_003479800.1| - 0.0016 18.2 0.0 0.0028 17.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|289581334|ref|YP_003479800.1| - 0.03 14.4 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|289581334|ref|YP_003479800.1| - 0.047 13.6 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 MarR family pXO2-72 PF17443.2 gi|289581334|ref|YP_003479800.1| - 0.074 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 FUR PF01475.19 gi|289581334|ref|YP_003479800.1| - 0.098 12.8 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|289581334|ref|YP_003479800.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3021 PF11457.8 gi|289581335|ref|YP_003479801.1| - 0.034 14.5 5.2 0.048 14.0 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) MARVEL PF01284.23 gi|289581335|ref|YP_003479801.1| - 0.25 11.4 8.5 0.025 14.6 3.2 1.8 1 1 1 2 2 2 0 Membrane-associating domain Rax2 PF12768.7 gi|289581335|ref|YP_003479801.1| - 4 6.8 5.0 0.28 10.6 0.4 1.4 2 0 0 2 2 2 0 Cortical protein marker for cell polarity Phage-Gp8 PF09215.10 gi|289581336|ref|YP_003479802.1| - 0.095 11.7 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T4, Gp8 Pyr_redox_2 PF07992.14 gi|289581337|ref|YP_003479803.1| - 2.8e-65 220.4 3.5 2.8e-65 220.4 3.5 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|289581337|ref|YP_003479803.1| - 5.5e-38 129.6 1.4 8.5e-38 129.0 0.3 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|289581337|ref|YP_003479803.1| - 7.6e-24 84.1 1.7 2.5e-20 72.8 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289581337|ref|YP_003479803.1| - 2.5e-10 40.0 2.3 3e-07 29.9 1.5 2.4 2 1 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|289581337|ref|YP_003479803.1| - 5e-09 35.8 0.2 2.3e-07 30.4 0.2 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289581337|ref|YP_003479803.1| - 1.6e-08 34.0 7.5 3.9e-06 26.2 0.7 3.3 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|289581337|ref|YP_003479803.1| - 1e-07 32.1 1.6 0.0016 18.7 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|289581337|ref|YP_003479803.1| - 3e-07 29.5 2.6 2.2e-05 23.4 0.1 2.5 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|289581337|ref|YP_003479803.1| - 7.1e-06 25.6 0.7 7.1e-06 25.6 0.7 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|289581337|ref|YP_003479803.1| - 8.2e-06 25.3 2.7 0.017 14.4 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|289581337|ref|YP_003479803.1| - 1.5e-05 24.4 6.3 0.034 13.4 0.8 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|289581337|ref|YP_003479803.1| - 1.7e-05 24.5 1.2 0.0006 19.4 0.1 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|289581337|ref|YP_003479803.1| - 2.8e-05 24.1 0.3 0.00058 19.8 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|289581337|ref|YP_003479803.1| - 7.6e-05 22.1 2.7 0.0066 15.7 0.3 2.9 3 0 0 3 3 3 1 Thi4 family Lycopene_cycl PF05834.12 gi|289581337|ref|YP_003479803.1| - 0.00011 21.4 1.6 0.018 14.1 0.1 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein XdhC_C PF13478.6 gi|289581337|ref|YP_003479803.1| - 0.00074 20.0 1.0 0.095 13.2 0.0 2.7 3 0 0 3 3 2 1 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|289581337|ref|YP_003479803.1| - 0.00096 19.6 0.3 0.87 10.1 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|289581337|ref|YP_003479803.1| - 0.0018 18.0 13.4 0.038 13.6 1.1 3.5 3 1 0 4 4 4 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|289581337|ref|YP_003479803.1| - 0.0036 16.2 2.1 0.011 14.6 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase TrkA_N PF02254.18 gi|289581337|ref|YP_003479803.1| - 0.0096 16.2 0.3 0.46 10.8 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|289581337|ref|YP_003479803.1| - 0.027 13.8 0.4 0.79 9.1 0.0 2.5 3 0 0 3 3 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AIRS PF00586.24 gi|289581337|ref|YP_003479803.1| - 0.04 14.6 0.9 0.9 10.2 0.9 2.9 1 1 0 1 1 1 0 AIR synthase related protein, N-terminal domain NAD_binding_9 PF13454.6 gi|289581337|ref|YP_003479803.1| - 7.9 6.4 6.6 2.3 8.2 0.1 3.0 4 0 0 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.23 gi|289581338|ref|YP_003479804.1| - 9.6e-90 300.1 0.0 1.3e-89 299.7 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 gi|289581338|ref|YP_003479804.1| - 6.6e-25 87.2 0.6 7.1e-17 61.5 0.1 3.4 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl PF00364.22 gi|289581338|ref|YP_003479804.1| - 2.1e-22 78.7 0.2 4.2e-22 77.8 0.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme GCV_H PF01597.19 gi|289581338|ref|YP_003479804.1| - 0.00021 21.2 0.1 0.00071 19.5 0.1 1.9 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|289581338|ref|YP_003479804.1| - 0.004 16.9 9.0 0.026 14.3 0.0 3.7 3 1 1 4 4 4 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|289581338|ref|YP_003479804.1| - 0.024 15.4 0.8 1.2 9.9 0.1 2.7 1 1 1 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.6 gi|289581338|ref|YP_003479804.1| - 0.037 14.0 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Transket_pyr PF02779.24 gi|289581339|ref|YP_003479805.1| - 1.3e-50 171.5 0.0 1.9e-50 171.0 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|289581339|ref|YP_003479805.1| - 7.7e-37 125.9 0.0 1.4e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|289581340|ref|YP_003479806.1| - 1.1e-86 290.5 0.0 1.3e-86 290.2 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|289581340|ref|YP_003479806.1| - 2.1e-07 30.4 0.0 3.2e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|289581340|ref|YP_003479806.1| - 0.0005 19.9 0.1 0.002 17.9 0.0 2.0 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|289581340|ref|YP_003479806.1| - 0.0014 17.6 0.0 0.0023 16.9 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|289581340|ref|YP_003479806.1| - 0.013 15.2 0.4 0.037 13.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|289581341|ref|YP_003479807.1| - 1.8e-14 54.5 0.1 4.6e-14 53.2 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|289581341|ref|YP_003479807.1| - 2.3e-10 40.8 0.1 5.5e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|289581341|ref|YP_003479807.1| - 0.017 15.2 0.1 14 5.8 0.0 3.3 2 2 1 3 3 3 0 B12 binding domain MatE PF01554.18 gi|289581342|ref|YP_003479808.1| - 1.3e-52 177.7 25.9 1.3e-28 99.7 10.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|289581342|ref|YP_003479808.1| - 3e-08 33.8 7.9 3e-08 33.8 7.9 4.8 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF3169 PF11368.8 gi|289581342|ref|YP_003479808.1| - 1.6 8.2 5.5 5.4 6.5 2.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) bPH_2 PF03703.14 gi|289581343|ref|YP_003479809.1| - 4e-19 68.6 0.1 6.3e-19 68.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF347 PF03988.12 gi|289581343|ref|YP_003479809.1| - 3.1 8.0 10.0 52 4.1 6.0 2.5 2 1 0 2 2 2 0 Repeat of Unknown Function (DUF347) RseC_MucC PF04246.12 gi|289581344|ref|YP_003479810.1| - 0.025 14.5 0.5 0.025 14.5 0.5 2.6 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DEAD PF00270.29 gi|289581345|ref|YP_003479811.1| - 1.8e-24 86.5 0.0 5.8e-24 84.8 0.0 1.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|289581345|ref|YP_003479811.1| - 1.6e-13 50.4 0.0 2.1e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|289581345|ref|YP_003479811.1| - 3e-12 46.9 0.0 4.9e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|289581345|ref|YP_003479811.1| - 3.5e-08 33.8 0.0 3.1e-07 30.7 0.0 2.5 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|289581345|ref|YP_003479811.1| - 0.014 15.9 1.2 0.043 14.4 1.2 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain UTP25 PF06862.12 gi|289581345|ref|YP_003479811.1| - 0.04 12.7 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 IstB_IS21 PF01695.17 gi|289581345|ref|YP_003479811.1| - 0.13 12.0 0.0 6.5 6.4 0.0 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF5353 PF17304.2 gi|289581347|ref|YP_003479813.1| - 0.068 12.9 1.9 0.11 12.3 1.9 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5353) S1FA PF04689.13 gi|289581347|ref|YP_003479813.1| - 0.15 12.2 2.0 0.26 11.5 2.0 1.4 1 0 0 1 1 1 0 DNA binding protein S1FA HAD_2 PF13419.6 gi|289581348|ref|YP_003479814.1| - 9.3e-32 110.5 0.0 1.1e-31 110.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289581348|ref|YP_003479814.1| - 1.2e-19 71.4 0.1 1e-18 68.4 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289581348|ref|YP_003479814.1| - 1.6e-09 38.4 0.7 1.9e-09 38.2 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289581348|ref|YP_003479814.1| - 1.9e-07 31.1 0.3 5.9e-07 29.5 0.3 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like Ufm1 PF03671.14 gi|289581348|ref|YP_003479814.1| - 0.082 13.0 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Ubiquitin fold modifier 1 protein DJ-1_PfpI PF01965.24 gi|289581349|ref|YP_003479815.1| - 5.7e-30 104.3 0.1 7.4e-30 103.9 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|289581349|ref|YP_003479815.1| - 0.0016 18.1 0.0 0.027 14.1 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain MazG PF03819.17 gi|289581350|ref|YP_003479816.1| - 1.1e-07 31.9 0.1 1.9e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|289581350|ref|YP_003479816.1| - 0.0013 18.9 0.1 0.0023 18.1 0.0 1.5 2 0 0 2 2 2 1 MazG-like family HD PF01966.22 gi|289581352|ref|YP_003479818.1| - 9.4e-12 45.2 2.2 2.7e-11 43.8 2.2 1.9 1 1 0 1 1 1 1 HD domain DKCLD PF08068.12 gi|289581352|ref|YP_003479818.1| - 0.041 14.0 0.0 7.8 6.7 0.0 2.4 2 0 0 2 2 2 0 DKCLD (NUC011) domain AAA_33 PF13671.6 gi|289581353|ref|YP_003479819.1| - 1.5e-23 83.5 0.0 1.9e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|289581353|ref|YP_003479819.1| - 1.9e-06 27.3 0.3 4.6e-06 26.1 0.3 1.6 1 1 0 1 1 1 1 Zeta toxin CPT PF07931.12 gi|289581353|ref|YP_003479819.1| - 2.6e-06 27.4 0.1 2.9e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.10 gi|289581353|ref|YP_003479819.1| - 4.5e-06 26.3 0.0 5.4e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|289581353|ref|YP_003479819.1| - 8.1e-06 26.4 0.4 7.5e-05 23.3 0.1 2.4 1 1 1 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|289581353|ref|YP_003479819.1| - 1.5e-05 25.0 0.0 2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 gi|289581353|ref|YP_003479819.1| - 0.00059 20.3 0.5 0.0038 17.6 0.5 2.1 1 1 0 1 1 1 1 AAA domain Guanylate_kin PF00625.21 gi|289581353|ref|YP_003479819.1| - 0.00074 19.3 0.4 0.0012 18.5 0.4 1.4 1 0 0 1 1 1 1 Guanylate kinase AAA_22 PF13401.6 gi|289581353|ref|YP_003479819.1| - 0.0028 17.9 0.1 0.007 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|289581353|ref|YP_003479819.1| - 0.031 13.6 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 0 6-phosphofructo-2-kinase SKI PF01202.22 gi|289581353|ref|YP_003479819.1| - 0.075 13.2 0.4 0.27 11.3 0.4 1.9 1 1 0 1 1 1 0 Shikimate kinase BPD_transp_1 PF00528.22 gi|289581354|ref|YP_003479820.1| - 2.1e-11 43.9 17.4 2.1e-11 43.9 17.4 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3382 PF11862.8 gi|289581354|ref|YP_003479820.1| - 0.4 11.0 11.4 0.25 11.7 0.5 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF3382) Phage_holin_3_6 PF07332.11 gi|289581354|ref|YP_003479820.1| - 1.9 8.5 18.2 0.27 11.3 7.1 2.8 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF418 PF04235.12 gi|289581354|ref|YP_003479820.1| - 2.7 7.9 10.8 0.91 9.4 3.5 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF418) ABC_tran PF00005.27 gi|289581355|ref|YP_003479821.1| - 6.2e-33 114.2 0.1 8.5e-33 113.8 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|289581355|ref|YP_003479821.1| - 1.1e-05 25.9 0.0 2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|289581355|ref|YP_003479821.1| - 6.9e-05 22.8 0.0 0.024 14.4 0.0 2.5 1 1 2 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|289581355|ref|YP_003479821.1| - 0.00015 21.8 0.0 0.00035 20.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|289581355|ref|YP_003479821.1| - 0.0002 21.0 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|289581355|ref|YP_003479821.1| - 0.00042 19.8 0.1 0.00089 18.8 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289581355|ref|YP_003479821.1| - 0.0014 19.2 0.6 0.0062 17.1 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289581355|ref|YP_003479821.1| - 0.004 17.4 0.1 0.0089 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|289581355|ref|YP_003479821.1| - 0.0078 14.9 0.0 2.5 6.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain G-alpha PF00503.20 gi|289581355|ref|YP_003479821.1| - 0.0098 15.1 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit FtsK_SpoIIIE PF01580.18 gi|289581355|ref|YP_003479821.1| - 0.0099 15.3 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family RsgA_GTPase PF03193.16 gi|289581355|ref|YP_003479821.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|289581355|ref|YP_003479821.1| - 0.018 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|289581355|ref|YP_003479821.1| - 0.023 14.3 0.0 0.055 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|289581355|ref|YP_003479821.1| - 0.033 14.7 0.0 0.067 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289581355|ref|YP_003479821.1| - 0.058 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|289581355|ref|YP_003479821.1| - 0.067 13.2 0.1 0.17 11.9 0.1 1.8 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|289581355|ref|YP_003479821.1| - 0.069 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|289581355|ref|YP_003479821.1| - 0.1 12.8 0.2 0.14 12.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|289581355|ref|YP_003479821.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Phosphonate-bd PF12974.7 gi|289581356|ref|YP_003479822.1| - 3.4e-43 148.0 0.6 5.8e-43 147.2 0.6 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HD_2 PF12917.7 gi|289581357|ref|YP_003479823.1| - 0.0016 18.2 0.0 0.0032 17.3 0.0 1.5 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 gi|289581357|ref|YP_003479823.1| - 0.0098 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 HD domain NucS PF01939.16 gi|289581358|ref|YP_003479824.1| - 2.1e-05 24.0 0.0 2.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS zf-C4_Topoisom PF01396.19 gi|289581358|ref|YP_003479824.1| - 0.023 14.5 0.2 0.023 14.5 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|289581358|ref|YP_003479824.1| - 0.14 12.3 15.4 1.9 8.7 2.0 3.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) tRNA_int_endo PF01974.17 gi|289581359|ref|YP_003479825.1| - 4.1e-28 97.3 0.0 2.6e-23 81.9 0.0 3.7 3 1 0 3 3 3 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|289581359|ref|YP_003479825.1| - 3.8e-24 84.1 0.3 4.8e-11 42.2 0.0 2.6 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|289581359|ref|YP_003479825.1| - 0.0031 17.6 0.1 3.9 7.7 0.0 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term Tubulin PF00091.25 gi|289581360|ref|YP_003479826.1| - 5.7e-12 46.3 0.0 1e-10 42.1 0.0 2.2 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|289581360|ref|YP_003479826.1| - 0.33 10.1 1.0 11 5.1 0.0 2.2 1 1 1 2 2 2 0 Tubulin like DUF4129 PF13559.6 gi|289581361|ref|YP_003479827.1| - 9.3e-05 22.6 0.8 9.3e-05 22.6 0.8 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) LtrA PF06772.11 gi|289581362|ref|YP_003479828.1| - 0.081 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) SLATT_fungal PF18142.1 gi|289581362|ref|YP_003479828.1| - 0.17 11.8 0.4 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain DUF58 PF01882.18 gi|289581363|ref|YP_003479829.1| - 5.2e-17 61.9 0.1 1.1e-16 60.8 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|289581363|ref|YP_003479829.1| - 5.6e-13 49.0 2.9 1.3e-12 47.9 0.5 2.6 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|289581363|ref|YP_003479829.1| - 4.3e-06 26.9 0.3 1.1e-05 25.6 0.3 1.8 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|289581363|ref|YP_003479829.1| - 0.00028 21.1 0.0 0.00056 20.1 0.0 1.4 1 0 0 1 1 1 1 CARDB TRAP_beta PF05753.14 gi|289581363|ref|YP_003479829.1| - 0.00031 20.2 0.0 0.00055 19.4 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) bMG10 PF17973.1 gi|289581363|ref|YP_003479829.1| - 0.00096 19.4 0.2 0.72 10.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial Alpha-2-macroglobulin MG10 domain Glyco_transf_4 PF13439.6 gi|289581363|ref|YP_003479829.1| - 0.1 12.6 0.6 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 Glycosyltransferase Family 4 BsuPI PF12690.7 gi|289581363|ref|YP_003479829.1| - 0.13 12.4 0.0 3.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Intracellular proteinase inhibitor HHH_5 PF14520.6 gi|289581364|ref|YP_003479830.1| - 0.00016 22.2 0.0 0.00073 20.1 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4191 PF13829.6 gi|289581364|ref|YP_003479830.1| - 0.021 14.2 1.0 0.021 14.2 1.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4191) DUF716 PF04819.12 gi|289581364|ref|YP_003479830.1| - 0.034 13.8 1.7 2.9 7.5 0.1 3.0 3 0 0 3 3 3 0 Family of unknown function (DUF716) AAA_3 PF07726.11 gi|289581365|ref|YP_003479831.1| - 1.7e-64 215.6 0.1 2.8e-64 214.8 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|289581365|ref|YP_003479831.1| - 1.4e-18 66.5 1.2 3.2e-18 65.3 1.2 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|289581365|ref|YP_003479831.1| - 3.5e-16 59.4 0.0 7.4e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|289581365|ref|YP_003479831.1| - 3e-07 30.9 0.0 9.8e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|289581365|ref|YP_003479831.1| - 3.1e-07 30.3 0.0 1.2e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|289581365|ref|YP_003479831.1| - 0.0069 16.1 0.0 0.12 12.1 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|289581365|ref|YP_003479831.1| - 0.019 14.4 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|289581365|ref|YP_003479831.1| - 0.033 14.3 0.0 0.066 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MCM PF00493.23 gi|289581365|ref|YP_003479831.1| - 0.07 12.2 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain tRNA-synt_1b PF00579.25 gi|289581366|ref|YP_003479832.1| - 2.7e-41 141.8 0.0 5.4e-27 94.9 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|289581368|ref|YP_003479834.1| - 2e-80 269.8 0.0 2.4e-80 269.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DprA_WH PF17782.1 gi|289581368|ref|YP_003479834.1| - 7.2e-05 22.8 2.2 7.2e-05 22.8 2.2 3.0 3 0 0 3 3 3 1 DprA winged helix domain MarR PF01047.22 gi|289581368|ref|YP_003479834.1| - 0.00062 19.6 0.0 0.006 16.5 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|289581368|ref|YP_003479834.1| - 0.00062 19.6 0.6 0.0017 18.2 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|289581368|ref|YP_003479834.1| - 0.0012 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding tRNA_synthFbeta PF17759.1 gi|289581368|ref|YP_003479834.1| - 0.0036 16.8 0.1 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|289581368|ref|YP_003479834.1| - 0.0067 15.6 0.5 0.78 8.7 0.1 2.5 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) HTH_IclR PF09339.10 gi|289581368|ref|YP_003479834.1| - 0.037 13.8 0.0 0.11 12.3 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|289581368|ref|YP_003479834.1| - 0.06 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|289581368|ref|YP_003479834.1| - 0.069 13.1 0.1 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|289581368|ref|YP_003479834.1| - 0.13 12.0 0.2 3.8 7.2 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|289581368|ref|YP_003479834.1| - 0.14 12.0 0.1 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|289581369|ref|YP_003479835.1| - 4.5e-44 150.4 0.1 6.8e-44 149.9 0.1 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|289581369|ref|YP_003479835.1| - 4e-14 52.7 0.0 7e-13 48.7 0.1 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|289581369|ref|YP_003479835.1| - 3.1e-12 46.5 0.0 4.9e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|289581369|ref|YP_003479835.1| - 7.2e-07 29.3 0.2 0.00019 21.6 0.1 3.0 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|289581369|ref|YP_003479835.1| - 6.8e-06 25.7 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Erythro-docking PF09277.11 gi|289581369|ref|YP_003479835.1| - 0.079 12.9 0.5 8.6 6.4 0.0 2.8 2 0 0 2 2 2 0 Erythronolide synthase, docking Peptidase_M14 PF00246.24 gi|289581370|ref|YP_003479836.1| - 4.1e-16 59.6 0.0 8.2e-16 58.6 0.0 1.6 1 1 0 1 1 1 1 Zinc carboxypeptidase TAT_signal PF10518.9 gi|289581370|ref|YP_003479836.1| - 0.0022 17.8 3.5 0.0022 17.8 3.5 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence SymE_toxin PF08845.10 gi|289581371|ref|YP_003479837.1| - 0.0012 18.9 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|289581371|ref|YP_003479837.1| - 0.017 15.1 0.4 0.025 14.5 0.4 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MC1 PF05854.11 gi|289581372|ref|YP_003479838.1| - 7.1e-47 157.7 0.3 8.4e-47 157.4 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Bac_rhodopsin PF01036.18 gi|289581373|ref|YP_003479839.1| - 3.6e-45 154.3 25.2 4.2e-45 154.1 25.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein PDT PF00800.18 gi|289581374|ref|YP_003479840.1| - 9.6e-48 162.4 0.2 1.2e-47 162.1 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|289581374|ref|YP_003479840.1| - 4.1e-07 29.6 0.0 1.1e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 ACT domain AhpC-TSA PF00578.21 gi|289581375|ref|YP_003479841.1| - 3.6e-31 107.7 0.0 4.2e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289581375|ref|YP_003479841.1| - 8.2e-19 67.8 0.1 9.7e-19 67.5 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|289581375|ref|YP_003479841.1| - 2.6e-06 27.5 0.0 6.1e-06 26.3 0.0 1.5 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|289581375|ref|YP_003479841.1| - 0.00078 19.0 0.0 0.00098 18.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HSP20 PF00011.21 gi|289581376|ref|YP_003479842.1| - 1.4e-20 73.3 0.2 1.8e-20 73.0 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|289581376|ref|YP_003479842.1| - 1.7e-13 49.9 0.1 2.5e-13 49.4 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|289581376|ref|YP_003479842.1| - 0.035 14.5 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 PIH1 CS-like domain Frataxin_Cyay PF01491.16 gi|289581376|ref|YP_003479842.1| - 0.05 13.7 0.0 0.35 11.0 0.0 2.3 1 1 0 1 1 1 0 Frataxin-like domain GvpH PF05455.11 gi|289581376|ref|YP_003479842.1| - 0.087 12.9 5.5 0.26 11.3 2.8 2.2 1 1 1 2 2 2 0 GvpH Imm45 PF15572.6 gi|289581376|ref|YP_003479842.1| - 0.13 12.7 0.0 0.33 11.3 0.0 1.6 2 0 0 2 2 2 0 Immunity protein 45 tRNA-synt_1 PF00133.22 gi|289581377|ref|YP_003479843.1| - 8.4e-68 229.1 4.7 2.9e-25 88.6 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|289581377|ref|YP_003479843.1| - 6.1e-56 188.9 0.0 1.1e-55 188.0 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|289581377|ref|YP_003479843.1| - 1.4e-38 132.7 0.2 6.7e-22 77.8 0.0 4.4 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|289581377|ref|YP_003479843.1| - 9.7e-14 51.6 0.0 2.7e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|289581377|ref|YP_003479843.1| - 1.8e-09 37.4 0.1 4.6e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|289581377|ref|YP_003479843.1| - 3.4e-05 22.9 0.0 0.0038 16.2 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) DZR PF12773.7 gi|289581377|ref|YP_003479843.1| - 0.0077 16.2 3.8 0.25 11.4 0.4 2.5 2 0 0 2 2 2 1 Double zinc ribbon tRNA-synt_1b PF00579.25 gi|289581377|ref|YP_003479843.1| - 0.041 13.2 0.1 0.12 11.7 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Zn-ribbon_8 PF09723.10 gi|289581377|ref|YP_003479843.1| - 0.044 13.9 5.2 0.21 11.7 0.1 2.9 2 1 1 3 3 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|289581377|ref|YP_003479843.1| - 0.59 10.2 11.5 1.3 9.1 0.0 4.2 4 1 1 5 5 5 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|289581377|ref|YP_003479843.1| - 0.87 9.1 5.3 13 5.3 0.4 3.6 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|289581377|ref|YP_003479843.1| - 1.8 8.1 11.0 2.3 7.8 0.5 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding HTH_20 PF12840.7 gi|289581378|ref|YP_003479844.1| - 3.5e-14 52.6 0.3 7.9e-14 51.5 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289581378|ref|YP_003479844.1| - 5.6e-05 22.9 2.5 0.00012 21.9 0.1 2.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|289581378|ref|YP_003479844.1| - 0.0061 17.0 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|289581378|ref|YP_003479844.1| - 0.021 14.4 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|289581378|ref|YP_003479844.1| - 0.023 14.4 0.1 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|289581378|ref|YP_003479844.1| - 0.16 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.22 gi|289581378|ref|YP_003479844.1| - 0.33 10.9 0.0 0.33 10.9 0.0 2.2 2 0 0 2 2 2 0 MarR family SSP160 PF06933.11 gi|289581378|ref|YP_003479844.1| - 2.1 6.5 6.4 3 5.9 6.4 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 CCG PF02754.16 gi|289581379|ref|YP_003479845.1| - 4.6e-16 58.8 0.0 5.5e-11 42.5 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|289581379|ref|YP_003479845.1| - 4.8e-10 39.4 9.3 1.1e-08 35.0 9.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|289581379|ref|YP_003479845.1| - 9.6e-10 37.9 13.3 1.7e-05 24.4 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|289581379|ref|YP_003479845.1| - 2.9e-09 37.2 5.0 2.9e-09 37.2 5.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289581379|ref|YP_003479845.1| - 8.4e-09 35.5 7.6 1.2e-08 34.9 5.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289581379|ref|YP_003479845.1| - 1.4e-07 32.0 9.3 1.4e-07 32.0 9.3 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289581379|ref|YP_003479845.1| - 2e-07 30.7 12.1 0.00026 20.9 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|289581379|ref|YP_003479845.1| - 1.3e-05 26.0 9.1 0.00012 22.9 9.7 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|289581379|ref|YP_003479845.1| - 4.9e-05 23.4 11.4 0.0086 16.2 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|289581379|ref|YP_003479845.1| - 0.00022 21.4 0.9 0.48 10.6 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|289581379|ref|YP_003479845.1| - 0.00027 20.9 23.2 0.00039 20.4 4.3 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|289581379|ref|YP_003479845.1| - 0.00085 19.8 11.0 0.00085 19.8 11.0 2.7 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|289581379|ref|YP_003479845.1| - 0.0012 19.1 18.6 0.0051 17.2 1.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|289581379|ref|YP_003479845.1| - 0.058 14.2 0.3 0.058 14.2 0.3 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|289581379|ref|YP_003479845.1| - 0.48 11.2 11.0 0.39 11.5 0.4 3.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|289581379|ref|YP_003479845.1| - 2.2 8.9 18.4 0.62 10.7 1.9 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|289581379|ref|YP_003479845.1| - 2.9 9.0 25.5 0.7 11.0 5.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Amidohydro_2 PF04909.14 gi|289581380|ref|YP_003479846.1| - 0.034 13.9 2.9 0.042 13.6 2.9 1.1 1 0 0 1 1 1 0 Amidohydrolase zf-C4H2 PF10146.9 gi|289581380|ref|YP_003479846.1| - 0.12 12.6 3.6 0.14 12.5 3.6 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein Cas_Cas4 PF01930.17 gi|289581381|ref|YP_003479847.1| - 0.0001 22.5 0.6 0.00091 19.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|289581381|ref|YP_003479847.1| - 0.0085 16.0 2.0 0.32 10.9 0.1 2.2 2 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Exo5 PF09810.9 gi|289581381|ref|YP_003479847.1| - 0.48 9.9 1.4 0.45 10.0 0.2 1.5 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease Sua5_yciO_yrdC PF01300.18 gi|289581382|ref|YP_003479848.1| - 3.3e-48 163.6 0.0 3.7e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination AhpC-TSA PF00578.21 gi|289581383|ref|YP_003479849.1| - 7.4e-13 48.5 0.0 9e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289581383|ref|YP_003479849.1| - 3.4e-06 26.8 0.0 6.1e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|289581383|ref|YP_003479849.1| - 0.0011 19.0 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GST_N_3 PF13417.6 gi|289581384|ref|YP_003479850.1| - 5.4e-13 49.2 0.0 6.7e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|289581384|ref|YP_003479850.1| - 1e-11 44.9 0.0 1.4e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|289581384|ref|YP_003479850.1| - 2.7e-11 43.5 0.2 3.9e-11 43.0 0.2 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.20 gi|289581384|ref|YP_003479850.1| - 0.00085 19.6 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF21 PF01595.20 gi|289581385|ref|YP_003479851.1| - 3.8e-48 163.5 0.2 6e-48 162.9 0.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|289581385|ref|YP_003479851.1| - 3.4e-21 75.0 2.3 3.4e-21 75.0 2.3 2.4 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.28 gi|289581385|ref|YP_003479851.1| - 1.3e-13 51.2 2.6 1.7e-06 28.4 0.1 2.9 2 0 0 2 2 2 2 CBS domain LptF_LptG PF03739.14 gi|289581386|ref|YP_003479852.1| - 0.3 9.9 7.6 0.091 11.6 0.3 2.1 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Claudin_2 PF13903.6 gi|289581386|ref|YP_003479852.1| - 1.3 8.8 4.8 11 5.7 0.1 2.8 1 1 1 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction PHO4 PF01384.20 gi|289581387|ref|YP_003479853.1| - 2.6e-47 161.5 31.4 2.6e-47 161.5 31.4 1.6 1 1 1 2 2 2 1 Phosphate transporter family ABC2_membrane_2 PF12679.7 gi|289581388|ref|YP_003479854.1| - 1.2e-29 103.5 9.4 3.3e-27 95.5 9.4 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289581388|ref|YP_003479854.1| - 0.00028 20.5 0.9 0.00044 19.9 0.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289581388|ref|YP_003479854.1| - 0.00082 19.4 4.9 0.00082 19.4 4.9 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein Peptidase_U4 PF03419.13 gi|289581388|ref|YP_003479854.1| - 1.8 7.8 12.1 0.032 13.5 5.1 1.6 2 0 0 2 2 2 0 Sporulation factor SpoIIGA ABC_tran PF00005.27 gi|289581389|ref|YP_003479855.1| - 9.3e-29 100.7 0.0 1.4e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581389|ref|YP_003479855.1| - 1.8e-12 47.7 0.0 6e-07 29.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581389|ref|YP_003479855.1| - 1.3e-05 25.9 0.0 3.6e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|289581389|ref|YP_003479855.1| - 0.0018 18.7 0.3 0.0036 17.7 0.1 1.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|289581389|ref|YP_003479855.1| - 0.0021 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|289581389|ref|YP_003479855.1| - 0.019 14.6 0.0 0.36 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|289581389|ref|YP_003479855.1| - 0.021 15.1 0.1 3 8.1 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|289581389|ref|YP_003479855.1| - 0.025 15.1 0.0 0.044 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|289581389|ref|YP_003479855.1| - 0.043 12.8 0.0 0.086 11.8 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|289581389|ref|YP_003479855.1| - 0.11 12.3 0.0 0.51 10.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289581389|ref|YP_003479855.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase ABC2_membrane_2 PF12679.7 gi|289581390|ref|YP_003479856.1| - 1.4e-18 67.2 22.4 4.6e-16 58.9 22.4 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein SUR7 PF06687.12 gi|289581390|ref|YP_003479856.1| - 0.0039 16.8 3.4 0.0072 16.0 3.3 1.5 1 1 0 1 1 1 1 SUR7/PalI family Pro_dh PF01619.18 gi|289581391|ref|YP_003479857.1| - 0.0053 16.3 0.3 0.0071 15.9 0.3 1.2 1 0 0 1 1 1 1 Proline dehydrogenase Tape_meas_lam_C PF09718.10 gi|289581391|ref|YP_003479857.1| - 0.022 14.9 0.4 0.048 13.8 0.3 1.7 1 1 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) HetR_C PF18460.1 gi|289581391|ref|YP_003479857.1| - 0.34 10.8 6.4 1.5 8.8 0.4 3.0 2 1 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain DUF883 PF05957.13 gi|289581391|ref|YP_003479857.1| - 4.1 8.1 8.3 11 6.7 1.5 3.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) UPRTase PF14681.6 gi|289581392|ref|YP_003479858.1| - 1.2e-47 162.1 0.0 1.4e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|289581392|ref|YP_003479858.1| - 5.2e-10 39.1 0.2 7.4e-10 38.6 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF2892 PF11127.8 gi|289581393|ref|YP_003479859.1| - 2e-16 59.8 0.4 2.2e-16 59.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Peptidase_S9 PF00326.21 gi|289581394|ref|YP_003479860.1| - 1e-56 191.8 0.6 2.4e-56 190.6 0.1 1.8 2 0 0 2 2 2 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|289581394|ref|YP_003479860.1| - 2.6e-13 49.5 3.7 8.8e-08 31.9 0.1 4.5 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|289581394|ref|YP_003479860.1| - 3.6e-06 26.7 0.0 7.6e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|289581394|ref|YP_003479860.1| - 1.7e-05 24.2 0.5 0.044 13.0 0.2 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|289581394|ref|YP_003479860.1| - 6.6e-05 21.8 0.0 0.076 11.8 0.0 4.2 4 1 0 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.12 gi|289581394|ref|YP_003479860.1| - 0.00028 19.7 0.5 0.032 12.9 0.5 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 gi|289581394|ref|YP_003479860.1| - 0.096 12.8 0.0 0.57 10.3 0.0 2.2 2 0 0 2 2 2 0 TAP-like protein Zip PF02535.22 gi|289581395|ref|YP_003479861.1| - 0.044 13.0 2.7 0.066 12.4 2.7 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter DUF2530 PF10745.9 gi|289581395|ref|YP_003479861.1| - 2.4 8.4 10.4 0.36 11.1 1.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) Phage_holin_2_1 PF04971.12 gi|289581396|ref|YP_003479862.1| - 1.2 9.2 4.6 0.79 9.8 1.1 2.3 2 0 0 2 2 2 0 Bacteriophage P21 holin S UPF0029 PF01205.19 gi|289581397|ref|YP_003479863.1| - 7.3e-31 106.6 0.0 1e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|289581397|ref|YP_003479863.1| - 2.2e-12 46.6 0.8 2e-11 43.6 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|289581397|ref|YP_003479863.1| - 0.0041 17.1 0.0 0.0078 16.2 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus Nif11 PF07862.11 gi|289581397|ref|YP_003479863.1| - 0.15 12.4 0.5 67 3.9 0.0 3.4 3 0 0 3 3 3 0 Nif11 domain ACT PF01842.25 gi|289581398|ref|YP_003479864.1| - 5.8e-06 26.0 1.1 1.2e-05 24.9 0.2 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|289581398|ref|YP_003479864.1| - 0.00027 20.7 0.1 0.0008 19.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain STI1 PF17830.1 gi|289581398|ref|YP_003479864.1| - 0.057 13.4 0.2 0.33 10.9 0.1 2.2 3 0 0 3 3 3 0 STI1 domain THEG4 PF15834.5 gi|289581398|ref|YP_003479864.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Testis highly expressed protein 4 SARS_lipid_bind PF09399.10 gi|289581399|ref|YP_003479865.1| - 0.052 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 SARS lipid binding protein SOG2 PF10428.9 gi|289581399|ref|YP_003479865.1| - 1.2 8.2 9.0 1.4 8.1 9.0 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Pneumo_att_G PF05539.11 gi|289581399|ref|YP_003479865.1| - 1.2 8.6 19.2 1.5 8.3 19.2 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G IGPD PF00475.18 gi|289581400|ref|YP_003479866.1| - 1.1e-58 197.7 1.9 1.6e-58 197.1 1.9 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ClpS PF02617.17 gi|289581400|ref|YP_003479866.1| - 0.14 11.9 0.2 9.9 6.0 0.1 2.4 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS TrkH PF02386.16 gi|289581402|ref|YP_003479868.1| - 1.2e-59 202.2 14.1 6e-57 193.2 14.1 2.0 1 1 0 1 1 1 1 Cation transport protein Form-deh_trans PF09163.11 gi|289581402|ref|YP_003479868.1| - 0.00079 19.1 0.0 0.00079 19.1 0.0 3.6 3 0 0 3 3 3 1 Formate dehydrogenase N, transmembrane His_biosynth PF00977.21 gi|289581403|ref|YP_003479869.1| - 1.6e-76 256.8 3.8 1.9e-76 256.6 3.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|289581403|ref|YP_003479869.1| - 2.3e-10 40.1 0.0 3.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|289581403|ref|YP_003479869.1| - 3e-10 39.8 0.4 9.1e-07 28.4 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|289581403|ref|YP_003479869.1| - 1.6e-09 37.4 4.9 0.00014 21.3 0.3 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|289581403|ref|YP_003479869.1| - 4e-08 33.0 10.4 6.2e-06 25.8 4.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase Trp_syntA PF00290.20 gi|289581403|ref|YP_003479869.1| - 2.2e-07 30.0 1.4 0.0054 15.6 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.21 gi|289581403|ref|YP_003479869.1| - 1.5e-06 27.6 0.4 0.0019 17.4 0.0 3.2 2 2 2 4 4 4 2 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|289581403|ref|YP_003479869.1| - 4.8e-05 22.5 1.7 0.016 14.2 0.2 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|289581403|ref|YP_003479869.1| - 0.00011 21.6 1.6 0.027 13.8 0.5 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|289581403|ref|YP_003479869.1| - 0.00011 21.7 0.8 0.018 14.4 0.1 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|289581403|ref|YP_003479869.1| - 0.00026 20.3 2.7 0.098 11.8 0.5 2.6 1 1 2 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase TBP-binding PF09247.11 gi|289581403|ref|YP_003479869.1| - 0.037 14.3 0.0 0.078 13.2 0.0 1.5 1 0 0 1 1 1 0 TATA box-binding protein binding B12-binding PF02310.19 gi|289581403|ref|YP_003479869.1| - 0.046 13.8 6.0 3.6 7.7 0.9 2.8 1 1 2 3 3 3 0 B12 binding domain Ribul_P_3_epim PF00834.19 gi|289581403|ref|YP_003479869.1| - 0.058 12.8 1.8 0.26 10.6 0.1 2.5 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|289581403|ref|YP_003479869.1| - 0.15 11.0 6.8 0.38 9.7 0.9 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PHO4 PF01384.20 gi|289581405|ref|YP_003479871.1| - 1.5e-35 122.9 34.5 5.1e-35 121.1 33.6 2.1 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|289581406|ref|YP_003479872.1| - 5.5e-25 88.5 1.7 6.1e-25 88.4 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Flavi_NS4A PF01350.17 gi|289581406|ref|YP_003479872.1| - 0.13 12.2 0.0 1.4 8.8 0.0 2.0 2 0 0 2 2 2 0 Flavivirus non-structural protein NS4A DUF2884 PF11101.8 gi|289581407|ref|YP_003479873.1| - 0.00013 21.5 23.0 0.0036 16.8 4.1 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF2884) DUF445 PF04286.12 gi|289581407|ref|YP_003479873.1| - 0.00021 21.2 24.1 0.0033 17.3 8.7 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF445) RHD3 PF05879.12 gi|289581407|ref|YP_003479873.1| - 0.0061 14.8 14.1 0.0073 14.5 14.1 1.1 1 0 0 1 1 1 1 Root hair defective 3 GTP-binding protein (RHD3) PIN_8 PF18476.1 gi|289581407|ref|YP_003479873.1| - 0.026 14.4 13.8 0.42 10.4 5.4 2.2 1 1 1 2 2 2 0 PIN like domain DinB_2 PF12867.7 gi|289581407|ref|YP_003479873.1| - 0.066 13.7 0.7 8.7 6.9 0.1 2.8 1 1 2 3 3 2 0 DinB superfamily COMPASS-Shg1 PF05205.12 gi|289581407|ref|YP_003479873.1| - 0.073 13.8 19.9 8.5e+03 -2.5 19.9 3.2 1 1 0 1 1 0 0 COMPASS (Complex proteins associated with Set1p) component shg1 Phasin PF05597.11 gi|289581407|ref|YP_003479873.1| - 0.076 13.0 36.3 0.39 10.7 5.6 3.7 1 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CSN4_RPN5_eIF3a PF18420.1 gi|289581407|ref|YP_003479873.1| - 0.077 13.2 0.1 0.45 10.7 0.1 2.3 1 0 0 1 1 1 0 CSN4/RPN5/eIF3a helix turn helix domain BLM10_mid PF16507.5 gi|289581407|ref|YP_003479873.1| - 0.087 11.5 4.4 0.066 11.8 2.6 1.5 1 1 1 2 2 2 0 Proteasome-substrate-size regulator, mid region dCache_2 PF08269.11 gi|289581407|ref|YP_003479873.1| - 0.092 11.9 18.1 0.17 11.0 4.2 2.2 1 1 1 2 2 2 0 Cache domain SseC PF04888.12 gi|289581407|ref|YP_003479873.1| - 0.1 12.2 17.4 24 4.4 17.4 3.0 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family DUF3819 PF12842.7 gi|289581407|ref|YP_003479873.1| - 0.12 12.3 16.1 0.41 10.6 2.2 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3819) MT0933_antitox PF14013.6 gi|289581407|ref|YP_003479873.1| - 0.14 12.5 21.3 10 6.5 1.7 5.8 2 1 1 3 3 3 0 MT0933-like antitoxin protein Knl1_RWD_C PF18210.1 gi|289581407|ref|YP_003479873.1| - 0.15 12.6 9.6 1.2 9.7 0.1 4.0 1 1 2 4 4 4 0 Knl1 RWD C-terminal domain DUF5314 PF17241.2 gi|289581407|ref|YP_003479873.1| - 0.22 11.2 7.7 32 4.1 0.2 3.3 1 1 1 2 2 2 0 Family of unknown function (DUF5314) DUF1690 PF07956.11 gi|289581407|ref|YP_003479873.1| - 0.5 10.8 25.7 1.2 9.5 10.1 2.3 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) YpjP PF14005.6 gi|289581407|ref|YP_003479873.1| - 0.56 10.3 22.6 3 7.9 4.6 3.3 1 1 2 3 3 3 0 YpjP-like protein DUF4199 PF13858.6 gi|289581407|ref|YP_003479873.1| - 0.8 10.1 5.1 2.9 8.3 3.9 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) CelTOS PF18659.1 gi|289581407|ref|YP_003479873.1| - 1 9.8 11.7 13 6.2 5.0 3.1 1 1 1 2 2 2 0 Cell-traversal protein for ookinetes and sporozoites PGDH_C PF16896.5 gi|289581407|ref|YP_003479873.1| - 1.6 8.7 26.0 5.1 7.0 2.5 4.3 1 1 3 4 4 4 0 Phosphogluconate dehydrogenase (decarboxylating) C-term Spo0A_C PF08769.11 gi|289581407|ref|YP_003479873.1| - 1.9 8.6 8.4 5.7 7.1 0.8 3.0 1 1 3 4 4 4 0 Sporulation initiation factor Spo0A C terminal DUF842 PF05811.13 gi|289581407|ref|YP_003479873.1| - 2 8.1 9.0 1.5 8.5 2.2 2.5 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF842) CEL_III_C PF18054.1 gi|289581407|ref|YP_003479873.1| - 3.6 7.6 18.2 5.2 7.1 9.2 2.3 1 1 1 2 2 2 0 CEL-III C-terminal RNA_pol_Rpb1_4 PF05000.17 gi|289581407|ref|YP_003479873.1| - 3.7 7.5 8.4 1.5e+02 2.3 0.1 3.7 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 HEPN_Swt1 PF18731.1 gi|289581407|ref|YP_003479873.1| - 4.2 7.7 9.0 32 4.9 0.4 3.5 1 1 3 4 4 4 0 Swt1-like HEPN Pdase_M17_N2 PF18295.1 gi|289581407|ref|YP_003479873.1| - 5.7 7.2 14.4 2 8.7 1.4 3.3 1 1 2 3 3 3 0 M17 aminopeptidase N-terminal domain 2 DUF4400 PF14348.6 gi|289581407|ref|YP_003479873.1| - 7 6.1 11.0 4.5 6.7 3.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4400) hDGE_amylase PF14701.6 gi|289581407|ref|YP_003479873.1| - 7.5 5.5 11.8 14 4.7 11.4 1.6 1 1 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain TMEM65 PF10507.9 gi|289581407|ref|YP_003479873.1| - 7.7 6.5 9.1 4.7 7.2 0.7 3.4 1 1 2 3 3 3 0 Transmembrane protein 65 DUF4164 PF13747.6 gi|289581407|ref|YP_003479873.1| - 8.8 6.7 16.0 0.29 11.4 3.2 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Spore_III_AB PF09548.10 gi|289581407|ref|YP_003479873.1| - 9.1 6.4 9.6 26 4.9 1.1 2.9 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Fer2 PF00111.27 gi|289581408|ref|YP_003479874.1| - 2.9e-15 56.0 0.5 5.1e-15 55.2 0.5 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|289581408|ref|YP_003479874.1| - 0.024 14.7 0.3 0.051 13.6 0.3 1.7 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Cupin_2 PF07883.11 gi|289581409|ref|YP_003479875.1| - 6.4e-13 48.2 0.9 9.3e-13 47.7 0.9 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|289581409|ref|YP_003479875.1| - 2.4e-05 24.3 0.0 2.7e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|289581409|ref|YP_003479875.1| - 0.033 13.8 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Cupin Ectoine_synth PF06339.12 gi|289581409|ref|YP_003479875.1| - 0.036 14.3 0.0 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase AraC_binding PF02311.19 gi|289581409|ref|YP_003479875.1| - 0.043 13.7 0.1 0.057 13.3 0.1 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain PGM_PMM_I PF02878.16 gi|289581410|ref|YP_003479876.1| - 1.6e-33 115.3 0.0 3e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|289581410|ref|YP_003479876.1| - 1.7e-29 102.5 0.6 2.1e-28 99.0 0.1 2.5 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|289581410|ref|YP_003479876.1| - 8.2e-16 58.2 0.0 1.8e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|289581410|ref|YP_003479876.1| - 2.8e-15 56.2 0.2 8.5e-15 54.7 0.2 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF4440 PF14534.6 gi|289581410|ref|YP_003479876.1| - 0.86 10.0 4.2 5.2 7.5 0.1 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4440) PRCH PF03967.13 gi|289581411|ref|YP_003479877.1| - 0.19 12.0 0.5 0.55 10.5 0.1 1.9 2 1 1 3 3 3 0 Photosynthetic reaction centre, H-chain N-terminal region Pribosyltran_N PF13793.6 gi|289581413|ref|YP_003479879.1| - 1.7e-19 69.9 0.0 1.9e-18 66.5 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|289581413|ref|YP_003479879.1| - 6.2e-12 45.3 0.4 3.3e-11 42.9 0.2 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|289581413|ref|YP_003479879.1| - 9.8e-09 35.5 0.6 1.7e-08 34.7 0.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|289581413|ref|YP_003479879.1| - 3.6e-06 26.6 0.1 6.9e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase tRNA-synt_1 PF00133.22 gi|289581414|ref|YP_003479880.1| - 2.3e-176 587.6 2.3 2.9e-176 587.3 2.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|289581414|ref|YP_003479880.1| - 2.1e-28 99.2 0.1 4.8e-28 98.0 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|289581414|ref|YP_003479880.1| - 1.6e-26 93.0 1.2 3e-10 39.4 0.1 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|289581414|ref|YP_003479880.1| - 3.4e-05 23.4 0.0 7.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|289581414|ref|YP_003479880.1| - 0.088 12.1 0.0 1.4 8.2 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DraK_HK_N PF18092.1 gi|289581414|ref|YP_003479880.1| - 4.3 7.8 7.3 2.9 8.4 0.2 3.1 2 1 0 2 2 2 0 DraK Histidine Kinase N-terminal domain DUF2892 PF11127.8 gi|289581416|ref|YP_003479882.1| - 0.64 10.1 6.5 1.1 9.4 6.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) UDG PF03167.19 gi|289581417|ref|YP_003479883.1| - 1.6e-24 86.7 0.0 2e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PTP_N PF12453.8 gi|289581417|ref|YP_003479883.1| - 0.061 13.0 0.2 0.17 11.7 0.1 1.7 2 0 0 2 2 2 0 Protein tyrosine phosphatase N terminal UPF0253 PF06786.12 gi|289581417|ref|YP_003479883.1| - 0.089 13.1 0.0 0.26 11.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HIT PF01230.23 gi|289581419|ref|YP_003479885.1| - 1.3e-27 96.4 0.0 1.6e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|289581419|ref|YP_003479885.1| - 2e-16 60.4 0.0 2.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|289581419|ref|YP_003479885.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Pox_A_type_inc PF04508.12 gi|289581420|ref|YP_003479886.1| - 0.3 11.0 0.4 0.52 10.3 0.4 1.2 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat SirB PF04247.12 gi|289581421|ref|YP_003479887.1| - 0.34 11.0 0.0 0.34 11.0 0.0 2.8 2 1 0 3 3 3 0 Invasion gene expression up-regulator, SirB Arc_PepC_II PF06847.11 gi|289581422|ref|YP_003479888.1| - 6.5e-10 39.4 0.4 4.1e-09 36.8 0.1 2.5 4 0 0 4 4 4 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|289581422|ref|YP_003479888.1| - 7.6e-07 29.5 10.4 7.6e-07 29.5 10.4 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family GATase PF00117.28 gi|289581423|ref|YP_003479889.1| - 3.9e-21 75.7 0.0 5.4e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289581423|ref|YP_003479889.1| - 2e-07 31.0 0.0 4.8e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 Peptidase C26 HTS PF04204.16 gi|289581423|ref|YP_003479889.1| - 0.00057 18.9 0.4 0.0052 15.8 0.4 2.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.14 gi|289581423|ref|YP_003479889.1| - 0.0075 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|289581423|ref|YP_003479889.1| - 0.028 14.2 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family 3HCDH_N PF02737.18 gi|289581423|ref|YP_003479889.1| - 0.052 13.4 0.2 0.088 12.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YkyA PF10368.9 gi|289581424|ref|YP_003479890.1| - 0.011 15.4 0.4 0.017 14.8 0.4 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein APG6_N PF17675.1 gi|289581424|ref|YP_003479890.1| - 0.021 15.3 4.4 0.036 14.6 4.4 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Spc24 PF08286.11 gi|289581424|ref|YP_003479890.1| - 0.041 14.1 0.2 0.071 13.4 0.2 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Striatin PF08232.12 gi|289581424|ref|YP_003479890.1| - 0.096 13.3 0.6 0.096 13.3 0.6 2.0 2 0 0 2 2 2 0 Striatin family Macoilin PF09726.9 gi|289581424|ref|YP_003479890.1| - 0.12 11.0 2.0 0.14 10.7 2.0 1.0 1 0 0 1 1 1 0 Macoilin family DUF4407 PF14362.6 gi|289581424|ref|YP_003479890.1| - 0.24 10.7 6.5 0.16 11.3 4.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) PALP PF00291.25 gi|289581425|ref|YP_003479891.1| - 5.1e-70 236.2 4.6 6e-70 236.0 4.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|289581425|ref|YP_003479891.1| - 0.079 13.3 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 C1 domain OTCace_N PF02729.21 gi|289581426|ref|YP_003479892.1| - 2.9e-53 179.9 0.1 4.4e-53 179.3 0.1 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|289581426|ref|YP_003479892.1| - 1.4e-51 174.7 0.0 1.9e-51 174.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YjeF_N PF03853.15 gi|289581426|ref|YP_003479892.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.6 2 0 0 2 2 2 0 YjeF-related protein N-terminus Peptidase_M20 PF01546.28 gi|289581427|ref|YP_003479893.1| - 6.9e-24 84.7 0.7 9.3e-24 84.3 0.7 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289581427|ref|YP_003479893.1| - 0.00012 21.9 0.0 0.00026 20.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|289581427|ref|YP_003479893.1| - 0.014 15.1 0.4 0.13 11.9 0.2 2.4 1 1 1 2 2 2 0 Peptidase family M28 Aminotran_3 PF00202.21 gi|289581428|ref|YP_003479894.1| - 6.7e-103 344.5 0.0 9.4e-103 344.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III AA_kinase PF00696.28 gi|289581429|ref|YP_003479895.1| - 2.4e-32 112.5 4.0 4.6e-32 111.5 4.0 1.4 1 1 0 1 1 1 1 Amino acid kinase family GCV_H PF01597.19 gi|289581429|ref|YP_003479895.1| - 0.04 13.8 0.9 0.16 11.9 0.1 2.1 2 0 0 2 2 2 0 Glycine cleavage H-protein EccE PF11203.8 gi|289581429|ref|YP_003479895.1| - 4 7.8 5.7 7.2 7.0 0.5 2.9 3 0 0 3 3 3 0 Putative type VII ESX secretion system translocon, EccE Semialdhyde_dh PF01118.24 gi|289581430|ref|YP_003479896.1| - 4.9e-28 98.0 0.0 1.1e-27 96.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|289581430|ref|YP_003479896.1| - 2.4e-07 31.0 0.0 4.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RimK PF08443.11 gi|289581431|ref|YP_003479897.1| - 7.6e-29 100.6 0.0 1.4e-28 99.8 0.0 1.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|289581431|ref|YP_003479897.1| - 5.2e-12 46.1 0.0 7.4e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|289581431|ref|YP_003479897.1| - 4e-09 36.1 0.0 8.1e-09 35.1 0.0 1.4 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|289581431|ref|YP_003479897.1| - 9.2e-07 28.6 0.1 5.8e-06 26.0 0.0 2.3 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|289581431|ref|YP_003479897.1| - 3.8e-06 26.6 0.3 1.3e-05 24.8 0.1 2.0 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|289581431|ref|YP_003479897.1| - 7.6e-06 25.5 0.1 0.00016 21.2 0.1 2.5 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|289581431|ref|YP_003479897.1| - 2.4e-05 23.8 0.0 0.0048 16.2 0.0 2.4 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp B12-binding PF02310.19 gi|289581431|ref|YP_003479897.1| - 0.017 15.2 0.3 0.093 12.8 0.0 2.3 3 1 0 3 3 3 0 B12 binding domain ATP-grasp_2 PF08442.10 gi|289581431|ref|YP_003479897.1| - 0.047 13.3 0.0 0.14 11.7 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain DNA_RNApol_7kD PF03604.13 gi|289581432|ref|YP_003479898.1| - 0.00079 19.1 1.6 0.0023 17.6 1.6 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|289581432|ref|YP_003479898.1| - 0.0037 16.9 0.5 2.3 8.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|289581432|ref|YP_003479898.1| - 0.0045 16.5 2.9 0.0056 16.2 2.9 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding ADD_ATRX PF17981.1 gi|289581432|ref|YP_003479898.1| - 0.014 15.2 1.0 0.051 13.4 0.0 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain Lar_restr_allev PF14354.6 gi|289581432|ref|YP_003479898.1| - 0.015 15.7 0.4 0.025 14.9 0.4 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|289581432|ref|YP_003479898.1| - 0.016 15.2 1.3 0.07 13.1 1.4 1.9 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|289581432|ref|YP_003479898.1| - 0.018 14.4 0.1 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581432|ref|YP_003479898.1| - 0.024 14.8 2.0 0.047 13.8 1.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|289581432|ref|YP_003479898.1| - 0.025 14.6 0.9 0.88 9.7 1.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|289581432|ref|YP_003479898.1| - 0.034 14.2 0.4 0.035 14.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HYPF PF07503.12 gi|289581432|ref|YP_003479898.1| - 0.039 13.7 0.0 6.8 6.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger Desulfoferrod_N PF06397.12 gi|289581432|ref|YP_003479898.1| - 0.052 13.2 1.2 0.9 9.2 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf_UBZ PF18439.1 gi|289581432|ref|YP_003479898.1| - 0.069 12.8 0.9 4.6 6.9 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|289581432|ref|YP_003479898.1| - 0.077 13.0 2.1 6.9 6.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF1451 PF07295.11 gi|289581432|ref|YP_003479898.1| - 0.094 12.8 1.0 0.11 12.5 1.0 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain RNA_POL_M_15KD PF02150.16 gi|289581432|ref|YP_003479898.1| - 0.099 12.5 1.6 0.78 9.7 1.6 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-C3HC PF07967.13 gi|289581432|ref|YP_003479898.1| - 0.2 11.7 1.1 1.5 8.9 0.1 2.0 1 1 1 2 2 2 0 C3HC zinc finger-like Prok-RING_1 PF14446.6 gi|289581432|ref|YP_003479898.1| - 0.46 10.4 4.5 0.87 9.6 4.5 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Eapp_C PF10238.9 gi|289581432|ref|YP_003479898.1| - 1.8 8.6 4.1 6.8 6.8 0.4 2.0 1 1 1 2 2 2 0 E2F-associated phosphoprotein Lyase_1 PF00206.20 gi|289581433|ref|YP_003479899.1| - 2.8e-56 191.2 0.0 5.2e-56 190.3 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|289581433|ref|YP_003479899.1| - 5e-16 59.2 1.4 5e-16 59.2 1.4 2.7 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.19 gi|289581434|ref|YP_003479900.1| - 1.6e-139 465.5 0.0 1.9e-139 465.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|289581434|ref|YP_003479900.1| - 0.00012 21.6 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|289581434|ref|YP_003479900.1| - 0.00033 20.4 0.3 0.016 14.9 0.0 2.2 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|289581434|ref|YP_003479900.1| - 0.0023 16.8 0.0 0.004 16.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase DUF2613 PF11021.8 gi|289581435|ref|YP_003479901.1| - 0.56 10.4 6.1 3.8 7.7 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) TcpE PF12648.7 gi|289581436|ref|YP_003479902.1| - 1.4 9.5 4.5 1.5 9.4 4.5 1.0 1 0 0 1 1 1 0 TcpE family DUF2207 PF09972.9 gi|289581436|ref|YP_003479902.1| - 3.6 6.3 6.3 3.7 6.2 6.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) 2_5_RNA_ligase2 PF13563.6 gi|289581437|ref|YP_003479903.1| - 1.5e-15 57.4 0.0 2e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|289581437|ref|YP_003479903.1| - 3.5e-08 33.5 0.0 0.00051 20.2 0.0 2.4 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|289581437|ref|YP_003479903.1| - 0.00011 22.2 0.0 0.00012 22.1 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain LPAM_1 PF08139.12 gi|289581438|ref|YP_003479904.1| - 0.021 15.3 0.2 0.033 14.7 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Helicase_C_2 PF13307.6 gi|289581439|ref|YP_003479905.1| - 2.3e-30 106.0 0.0 5.2e-30 104.9 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|289581439|ref|YP_003479905.1| - 4.7e-20 71.9 0.1 8.4e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|289581439|ref|YP_003479905.1| - 6.3e-07 29.3 0.1 0.0014 18.4 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|289581439|ref|YP_003479905.1| - 7.2e-07 29.4 0.1 5.8e-05 23.2 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|289581439|ref|YP_003479905.1| - 0.0008 18.8 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|289581439|ref|YP_003479905.1| - 0.0017 18.0 2.0 0.62 9.6 0.0 4.1 4 0 0 4 4 4 1 AAA domain HBB PF06777.11 gi|289581439|ref|YP_003479905.1| - 0.0072 16.0 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 Helical and beta-bridge domain DUF815 PF05673.13 gi|289581439|ref|YP_003479905.1| - 0.016 14.3 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_34 PF13872.6 gi|289581439|ref|YP_003479905.1| - 0.017 14.0 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 PhoH PF02562.16 gi|289581439|ref|YP_003479905.1| - 0.026 14.0 0.0 0.092 12.2 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein CSS-motif PF12792.7 gi|289581439|ref|YP_003479905.1| - 0.13 11.7 0.2 1.4 8.4 0.0 2.6 3 0 0 3 3 3 0 CSS motif domain associated with EAL Asparaginase_C PF17763.1 gi|289581439|ref|YP_003479905.1| - 0.17 12.1 0.1 0.58 10.4 0.1 1.9 1 1 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain ArsA_ATPase PF02374.15 gi|289581439|ref|YP_003479905.1| - 0.21 10.7 0.5 0.51 9.5 0.1 1.8 2 1 0 2 2 2 0 Anion-transporting ATPase DUF883 PF05957.13 gi|289581439|ref|YP_003479905.1| - 2.4 8.8 9.4 2 9.1 1.7 3.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) AAA_16 PF13191.6 gi|289581439|ref|YP_003479905.1| - 3 8.2 7.0 35 4.7 7.0 2.7 1 1 0 1 1 1 0 AAA ATPase domain EMP24_GP25L PF01105.24 gi|289581441|ref|YP_003479907.1| - 0.0043 17.0 1.4 0.011 15.7 0.0 1.9 1 1 1 2 2 2 1 emp24/gp25L/p24 family/GOLD Secretin_N_2 PF07655.13 gi|289581441|ref|YP_003479907.1| - 0.17 12.5 4.9 0.31 11.6 3.8 2.0 2 0 0 2 2 2 0 Secretin N-terminal domain PPC PF04151.15 gi|289581441|ref|YP_003479907.1| - 0.21 12.7 3.5 0.21 12.7 0.1 2.3 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain DUF3558 PF12079.8 gi|289581441|ref|YP_003479907.1| - 1.2 9.1 7.7 1.6 8.7 7.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3558) Glyoxalase PF00903.25 gi|289581442|ref|YP_003479908.1| - 1.2e-12 48.2 0.1 1.7e-12 47.7 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289581442|ref|YP_003479908.1| - 1e-06 29.0 0.0 1.9e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289581442|ref|YP_003479908.1| - 0.025 15.4 0.0 0.046 14.5 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase-like domain DUF3880 PF12996.7 gi|289581442|ref|YP_003479908.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Abhydrolase_2 PF02230.16 gi|289581443|ref|YP_003479909.1| - 8.1e-19 68.3 0.0 4e-18 66.0 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|289581443|ref|YP_003479909.1| - 7.9e-08 32.1 0.0 1.1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|289581443|ref|YP_003479909.1| - 7.4e-06 25.4 0.3 0.048 12.9 0.0 3.0 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|289581443|ref|YP_003479909.1| - 8.9e-05 22.1 0.5 0.086 12.3 0.0 2.6 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|289581443|ref|YP_003479909.1| - 0.00046 19.9 0.0 0.00063 19.5 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|289581443|ref|YP_003479909.1| - 0.0017 18.3 0.2 0.31 10.9 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|289581443|ref|YP_003479909.1| - 0.0061 16.3 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.11 gi|289581443|ref|YP_003479909.1| - 0.0075 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 PE-PPE domain DUF3243 PF11588.8 gi|289581443|ref|YP_003479909.1| - 0.014 15.7 0.1 0.12 12.7 0.0 2.3 2 1 0 3 3 3 0 Protein of unknown function (DUF3243) DUF3530 PF12048.8 gi|289581443|ref|YP_003479909.1| - 0.02 14.3 0.3 0.033 13.6 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3530) AP_endonuc_2 PF01261.24 gi|289581443|ref|YP_003479909.1| - 0.03 13.8 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Cutinase PF01083.22 gi|289581443|ref|YP_003479909.1| - 0.03 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Cutinase Abhydrolase_6 PF12697.7 gi|289581443|ref|YP_003479909.1| - 0.12 12.9 1.1 7.2 7.1 0.2 2.2 1 1 1 2 2 2 0 Alpha/beta hydrolase family Copper-bind PF00127.20 gi|289581444|ref|YP_003479910.1| - 0.048 14.1 0.0 0.09 13.2 0.0 1.5 1 0 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family adh_short_C2 PF13561.6 gi|289581445|ref|YP_003479911.1| - 2.9e-65 220.1 1.7 3.4e-65 219.9 1.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289581445|ref|YP_003479911.1| - 7.1e-52 175.7 0.9 9.1e-52 175.4 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289581445|ref|YP_003479911.1| - 5.7e-13 49.2 0.1 8.6e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|289581445|ref|YP_003479911.1| - 0.00065 18.8 0.2 0.00093 18.3 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|289581445|ref|YP_003479911.1| - 0.017 14.6 0.1 0.024 14.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|289581445|ref|YP_003479911.1| - 0.043 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Usp PF00582.26 gi|289581446|ref|YP_003479912.1| - 1.1e-27 97.2 1.6 1.4e-27 97.0 1.6 1.1 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M29 PF02073.15 gi|289581447|ref|YP_003479913.1| - 2.7e-64 217.5 0.2 4.4e-64 216.7 0.2 1.3 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) BatA PF07584.11 gi|289581448|ref|YP_003479914.1| - 0.025 15.0 0.0 0.058 13.8 0.0 1.6 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal Beta_elim_lyase PF01212.21 gi|289581451|ref|YP_003479917.1| - 1.4e-86 290.4 0.2 1.7e-86 290.2 0.2 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|289581451|ref|YP_003479917.1| - 0.00013 21.1 0.0 0.0078 15.2 0.0 2.0 1 1 1 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|289581451|ref|YP_003479917.1| - 0.0011 18.4 0.1 0.0069 15.7 0.0 2.2 3 0 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|289581451|ref|YP_003479917.1| - 0.056 12.0 0.0 0.08 11.4 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF4083 PF13314.6 gi|289581452|ref|YP_003479918.1| - 0.23 11.5 4.4 0.26 11.2 4.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Aminotran_1_2 PF00155.21 gi|289581453|ref|YP_003479919.1| - 8.9e-70 235.7 0.0 1e-69 235.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|289581453|ref|YP_003479919.1| - 5.3e-06 25.6 0.0 7.6e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|289581453|ref|YP_003479919.1| - 3.5e-05 22.5 0.0 4.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|289581453|ref|YP_003479919.1| - 5.5e-05 22.6 0.1 7.7e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|289581453|ref|YP_003479919.1| - 0.034 13.4 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Arginase PF00491.21 gi|289581454|ref|YP_003479920.1| - 4e-74 249.6 0.5 4.8e-74 249.4 0.5 1.1 1 0 0 1 1 1 1 Arginase family NRD1_2 PF01995.16 gi|289581455|ref|YP_003479921.1| - 3.6e-20 72.3 0.0 1.9e-10 40.4 0.0 2.1 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|289581455|ref|YP_003479921.1| - 6.2e-11 42.1 0.3 1.4e-10 41.0 0.3 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|289581455|ref|YP_003479921.1| - 0.0072 16.0 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e LppA PF16708.5 gi|289581455|ref|YP_003479921.1| - 0.05 13.5 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 Lipoprotein confined to pathogenic Mycobacterium CN_hydrolase PF00795.22 gi|289581456|ref|YP_003479922.1| - 6.7e-40 137.1 0.0 8.7e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase YbjN PF10722.9 gi|289581456|ref|YP_003479922.1| - 0.039 14.0 0.0 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator BPD_transp_1 PF00528.22 gi|289581457|ref|YP_003479923.1| - 9.4e-28 97.2 39.6 1.7e-17 63.8 13.5 4.3 2 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|289581458|ref|YP_003479924.1| - 1.3e-35 122.9 0.0 3e-35 121.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|289581458|ref|YP_003479924.1| - 6.2e-12 45.5 1.0 1.8e-11 44.0 0.3 2.3 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 gi|289581458|ref|YP_003479924.1| - 5.3e-06 26.5 0.1 0.11 12.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289581458|ref|YP_003479924.1| - 0.00037 20.0 0.3 0.06 12.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289581458|ref|YP_003479924.1| - 0.00093 19.5 1.3 0.0043 17.3 1.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289581458|ref|YP_003479924.1| - 0.0014 19.1 0.6 0.0053 17.2 0.6 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|289581458|ref|YP_003479924.1| - 0.0052 17.2 0.3 0.019 15.4 0.3 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|289581458|ref|YP_003479924.1| - 0.0069 16.6 0.4 0.028 14.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|289581458|ref|YP_003479924.1| - 0.016 14.8 0.1 0.36 10.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|289581458|ref|YP_003479924.1| - 0.018 15.0 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|289581458|ref|YP_003479924.1| - 0.026 13.8 0.2 0.062 12.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_23 PF13476.6 gi|289581458|ref|YP_003479924.1| - 0.026 15.0 1.4 0.21 12.1 0.2 2.5 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|289581458|ref|YP_003479924.1| - 0.033 13.9 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289581458|ref|YP_003479924.1| - 0.072 12.8 0.1 0.2 11.4 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|289581458|ref|YP_003479924.1| - 0.073 13.5 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.6 gi|289581458|ref|YP_003479924.1| - 0.075 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain TOBE PF03459.17 gi|289581458|ref|YP_003479924.1| - 0.089 13.1 0.3 22 5.4 0.0 2.9 2 1 0 2 2 2 0 TOBE domain AAA_28 PF13521.6 gi|289581458|ref|YP_003479924.1| - 0.11 12.8 1.3 0.3 11.3 0.3 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|289581458|ref|YP_003479924.1| - 0.11 12.2 0.5 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289581458|ref|YP_003479924.1| - 0.15 12.0 0.2 0.47 10.4 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase SBP_bac_8 PF13416.6 gi|289581459|ref|YP_003479925.1| - 1.7e-23 83.9 0.9 2.1e-23 83.5 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289581459|ref|YP_003479925.1| - 5.7e-13 48.9 0.0 1.2e-12 47.7 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289581459|ref|YP_003479925.1| - 2.4e-05 24.5 1.6 0.00017 21.7 1.6 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289581459|ref|YP_003479925.1| - 0.00042 20.1 0.1 0.0084 15.9 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289581459|ref|YP_003479925.1| - 0.0021 17.8 9.2 0.0038 17.0 9.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Lactococcin PF04369.13 gi|289581459|ref|YP_003479925.1| - 0.014 15.5 0.1 0.044 13.9 0.0 1.8 2 0 0 2 2 2 0 Lactococcin-like family NRD1_2 PF01995.16 gi|289581460|ref|YP_003479926.1| - 6e-22 78.1 0.0 9e-12 44.8 0.0 2.1 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|289581460|ref|YP_003479926.1| - 5.8e-13 48.6 0.5 1.4e-12 47.3 0.5 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|289581460|ref|YP_003479926.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19e Aminotran_3 PF00202.21 gi|289581461|ref|YP_003479927.1| - 5.6e-57 193.2 0.0 7.3e-57 192.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Metallophos_2 PF12850.7 gi|289581463|ref|YP_003479929.1| - 1.9e-28 99.7 0.5 2.2e-28 99.5 0.5 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289581463|ref|YP_003479929.1| - 4.8e-06 27.2 0.1 0.0048 17.4 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Bactofilin PF04519.13 gi|289581464|ref|YP_003479930.1| - 6e-17 61.7 10.9 1.6e-11 44.4 3.3 2.0 1 1 1 2 2 2 2 Polymer-forming cytoskeletal DUF3494 PF11999.8 gi|289581464|ref|YP_003479930.1| - 4e-05 23.3 5.6 0.098 12.3 0.1 2.9 1 1 1 3 3 3 3 Protein of unknown function (DUF3494) 30K_MP_C_Ter PF11330.8 gi|289581464|ref|YP_003479930.1| - 0.13 11.5 3.5 3.3 7.0 0.4 2.4 1 1 1 2 2 2 0 C-Terminal of 30K viral movement proteins Gp5_C PF06715.12 gi|289581464|ref|YP_003479930.1| - 3.1 8.1 13.2 15 6.0 0.5 5.5 6 0 0 6 6 6 0 Gp5 C-terminal repeat (3 copies) HTH_24 PF13412.6 gi|289581465|ref|YP_003479931.1| - 2.1e-12 46.4 0.3 4.6e-12 45.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|289581465|ref|YP_003479931.1| - 9e-12 44.6 0.0 2e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|289581465|ref|YP_003479931.1| - 8.1e-06 25.7 0.1 0.00014 21.7 0.0 2.4 3 0 0 3 3 3 1 HTH domain HTH_5 PF01022.20 gi|289581465|ref|YP_003479931.1| - 3.3e-05 23.6 0.0 7.4e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289581465|ref|YP_003479931.1| - 0.00017 21.6 0.0 0.00041 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|289581465|ref|YP_003479931.1| - 0.0002 21.5 0.0 0.0016 18.6 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|289581465|ref|YP_003479931.1| - 0.00029 20.7 0.0 0.00075 19.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289581465|ref|YP_003479931.1| - 0.00072 19.5 0.0 0.017 15.1 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|289581465|ref|YP_003479931.1| - 0.0009 19.0 0.0 0.0022 17.7 0.0 1.6 2 0 0 2 2 1 1 Homeodomain-like domain MarR PF01047.22 gi|289581465|ref|YP_003479931.1| - 0.0011 18.8 0.0 0.0028 17.6 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_DeoR PF08220.12 gi|289581465|ref|YP_003479931.1| - 0.0017 18.1 0.2 0.0081 15.9 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain DUF2250 PF10007.9 gi|289581465|ref|YP_003479931.1| - 0.0054 16.8 0.1 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|289581465|ref|YP_003479931.1| - 0.0068 16.3 0.0 0.018 14.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|289581465|ref|YP_003479931.1| - 0.0074 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|289581465|ref|YP_003479931.1| - 0.0087 16.5 0.1 0.034 14.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|289581465|ref|YP_003479931.1| - 0.0097 16.0 0.0 0.027 14.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DDRGK PF09756.9 gi|289581465|ref|YP_003479931.1| - 0.014 15.0 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 DDRGK domain HTH_IclR PF09339.10 gi|289581465|ref|YP_003479931.1| - 0.019 14.7 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|289581465|ref|YP_003479931.1| - 0.041 14.2 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein GntR PF00392.21 gi|289581465|ref|YP_003479931.1| - 0.043 13.5 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|289581465|ref|YP_003479931.1| - 0.047 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r3 PF04539.16 gi|289581465|ref|YP_003479931.1| - 0.067 13.3 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_45 PF14947.6 gi|289581465|ref|YP_003479931.1| - 0.084 12.9 0.0 0.43 10.6 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix FUR PF01475.19 gi|289581465|ref|YP_003479931.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HrcA_DNA-bdg PF03444.15 gi|289581465|ref|YP_003479931.1| - 0.12 12.0 0.1 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_10 PF04967.12 gi|289581465|ref|YP_003479931.1| - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HalOD1 PF18545.1 gi|289581466|ref|YP_003479932.1| - 1.2e-26 92.7 0.1 1.4e-26 92.5 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Response_reg PF00072.24 gi|289581467|ref|YP_003479933.1| - 1.1e-13 51.3 0.0 1.3e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain AAA_17 PF13207.6 gi|289581469|ref|YP_003479935.1| - 6.1e-16 59.1 1.3 6.2e-16 59.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289581469|ref|YP_003479935.1| - 3.8e-10 40.4 0.1 7.4e-10 39.5 0.0 1.5 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|289581469|ref|YP_003479935.1| - 5.7e-05 23.3 0.0 8.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|289581469|ref|YP_003479935.1| - 0.00024 21.3 0.1 0.00057 20.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain DUF3071 PF11268.8 gi|289581469|ref|YP_003479935.1| - 0.0063 16.6 1.8 0.47 10.5 0.4 2.3 2 1 0 2 2 2 2 Protein of unknown function (DUF3071) AF-4 PF05110.13 gi|289581469|ref|YP_003479935.1| - 3.4 5.6 10.0 3.9 5.4 10.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein RNA_binding PF01877.17 gi|289581470|ref|YP_003479936.1| - 2.8e-10 40.5 0.3 2.3e-09 37.6 0.3 2.0 1 1 0 1 1 1 1 RNA binding SRP54 PF00448.22 gi|289581472|ref|YP_003479938.1| - 9.4e-64 214.7 0.1 1.7e-63 213.8 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|289581472|ref|YP_003479938.1| - 1e-28 99.9 5.0 1e-28 99.9 5.0 3.3 3 1 1 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|289581472|ref|YP_003479938.1| - 1.9e-18 66.5 1.0 6.4e-18 64.8 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|289581472|ref|YP_003479938.1| - 0.0027 17.7 0.0 0.008 16.2 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CARD PF00619.21 gi|289581472|ref|YP_003479938.1| - 0.0043 17.0 0.5 0.18 11.8 0.1 2.4 2 0 0 2 2 2 1 Caspase recruitment domain cobW PF02492.19 gi|289581472|ref|YP_003479938.1| - 0.0063 16.1 0.6 0.12 11.9 0.6 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 gi|289581472|ref|YP_003479938.1| - 0.023 13.9 0.0 0.023 13.9 0.0 3.0 2 1 0 3 3 3 0 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|289581472|ref|YP_003479938.1| - 0.028 13.7 0.0 0.14 11.4 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin DUF2202 PF09968.9 gi|289581472|ref|YP_003479938.1| - 0.049 13.5 0.2 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) KdpC PF02669.15 gi|289581472|ref|YP_003479938.1| - 0.073 12.9 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 K+-transporting ATPase, c chain AAA_24 PF13479.6 gi|289581472|ref|YP_003479938.1| - 0.079 12.7 0.0 0.28 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|289581472|ref|YP_003479938.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Tex_YqgF PF16921.5 gi|289581472|ref|YP_003479938.1| - 0.12 12.9 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 Tex protein YqgF-like domain AAA_22 PF13401.6 gi|289581472|ref|YP_003479938.1| - 0.12 12.7 0.1 2.1 8.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF4618 PF15397.6 gi|289581472|ref|YP_003479938.1| - 3.3 7.0 9.1 0.069 12.6 0.6 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) T3SS_basalb_I PF17001.5 gi|289581472|ref|YP_003479938.1| - 9.6 6.9 12.3 1 10.0 1.0 3.4 3 0 0 3 3 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI Pyr_redox_2 PF07992.14 gi|289581474|ref|YP_003479940.1| - 2.3e-45 155.1 1.1 3.6e-45 154.4 1.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|289581474|ref|YP_003479940.1| - 6.7e-23 81.1 0.2 1.4e-22 80.0 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|289581474|ref|YP_003479940.1| - 1.4e-16 60.8 1.4 8.6e-16 58.3 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289581474|ref|YP_003479940.1| - 1e-05 25.0 0.7 0.0047 16.2 0.0 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|289581474|ref|YP_003479940.1| - 9.3e-05 21.7 0.0 0.00037 19.8 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|289581474|ref|YP_003479940.1| - 0.021 13.9 0.4 0.21 10.6 0.1 2.3 2 0 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|289581474|ref|YP_003479940.1| - 0.067 12.8 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|289581474|ref|YP_003479940.1| - 0.22 11.4 3.3 0.32 10.9 0.0 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1917 PF08939.10 gi|289581476|ref|YP_003479942.1| - 8e-14 52.2 0.0 9.6e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) Rhodanese PF00581.20 gi|289581477|ref|YP_003479943.1| - 8.1e-39 132.4 0.0 3.3e-19 69.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Yop-YscD_ppl PF16693.5 gi|289581477|ref|YP_003479943.1| - 0.022 14.2 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Inner membrane component of T3SS, periplasmic domain Gcd10p PF04189.13 gi|289581477|ref|YP_003479943.1| - 0.11 11.6 0.0 1.7 7.7 0.0 2.0 2 0 0 2 2 2 0 Gcd10p family Rhodanese PF00581.20 gi|289581478|ref|YP_003479944.1| - 4e-35 120.6 0.1 1.4e-17 64.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rubrerythrin PF02915.17 gi|289581479|ref|YP_003479945.1| - 0.004 17.5 5.3 0.1 13.0 1.0 2.6 2 1 0 2 2 2 2 Rubrerythrin Haem_oxygenas_2 PF14518.6 gi|289581479|ref|YP_003479945.1| - 0.034 13.9 0.7 0.38 10.5 0.7 2.3 1 1 0 1 1 1 0 Iron-containing redox enzyme DUF3813 PF12758.7 gi|289581479|ref|YP_003479945.1| - 0.1 12.9 4.8 0.37 11.1 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3813) Ferritin PF00210.24 gi|289581479|ref|YP_003479945.1| - 0.13 12.2 1.1 0.55 10.2 0.1 2.4 2 1 1 3 3 3 0 Ferritin-like domain SIP PF04954.13 gi|289581479|ref|YP_003479945.1| - 0.2 12.2 5.6 12 6.4 1.9 2.8 3 1 0 3 3 3 0 Siderophore-interacting protein 4HB_MCP_1 PF12729.7 gi|289581479|ref|YP_003479945.1| - 4.1 6.9 5.2 16 5.0 0.3 2.6 2 2 0 2 2 2 0 Four helix bundle sensory module for signal transduction HK PF02110.15 gi|289581480|ref|YP_003479946.1| - 3.8e-65 219.7 1.1 4.6e-65 219.4 1.1 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|289581480|ref|YP_003479946.1| - 7.4e-06 25.5 0.2 1.1e-05 25.0 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|289581480|ref|YP_003479946.1| - 0.00036 20.1 0.4 0.00055 19.5 0.4 1.3 1 0 0 1 1 1 1 Carbohydrate kinase TMP-TENI PF02581.17 gi|289581481|ref|YP_003479947.1| - 1.6e-59 200.3 3.3 1.9e-59 200.0 3.3 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|289581481|ref|YP_003479947.1| - 0.00016 21.2 8.2 0.0002 20.9 8.2 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|289581481|ref|YP_003479947.1| - 0.021 14.1 4.0 0.037 13.3 4.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG CEND1 PF15677.5 gi|289581482|ref|YP_003479948.1| - 0.12 12.9 0.1 0.13 12.8 0.1 1.0 1 0 0 1 1 1 0 Cell cycle exit and neuronal differentiation protein 1 Acetyltransf_4 PF13420.7 gi|289581483|ref|YP_003479949.1| - 1.4e-31 109.7 0.0 1.7e-31 109.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289581483|ref|YP_003479949.1| - 4.8e-13 49.4 0.0 7.5e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|289581483|ref|YP_003479949.1| - 1.5e-07 31.7 0.1 2.1e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289581483|ref|YP_003479949.1| - 1.2e-06 29.3 0.0 1.6e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|289581483|ref|YP_003479949.1| - 5.5e-06 26.3 0.0 7.9e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289581483|ref|YP_003479949.1| - 0.0023 17.8 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein SRP54 PF00448.22 gi|289581485|ref|YP_003479951.1| - 1.9e-67 226.7 0.1 2.7e-67 226.2 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|289581485|ref|YP_003479951.1| - 6e-13 48.8 2.9 6.2e-13 48.8 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.20 gi|289581485|ref|YP_003479951.1| - 6.4e-05 22.9 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.23 gi|289581485|ref|YP_003479951.1| - 0.00024 21.2 0.1 0.0015 18.6 0.0 2.3 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|289581485|ref|YP_003479951.1| - 0.00026 20.7 0.0 0.0062 16.2 0.0 2.5 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|289581485|ref|YP_003479951.1| - 0.00058 20.3 0.0 0.0014 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|289581485|ref|YP_003479951.1| - 0.00079 19.2 0.4 0.0022 17.8 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289581485|ref|YP_003479951.1| - 0.00096 19.4 1.2 0.0045 17.2 0.3 2.7 3 1 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|289581485|ref|YP_003479951.1| - 0.0015 17.9 0.1 0.0027 17.0 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|289581485|ref|YP_003479951.1| - 0.0031 18.0 0.0 0.0031 18.0 0.0 2.7 4 0 0 4 4 4 1 AAA domain KTI12 PF08433.10 gi|289581485|ref|YP_003479951.1| - 0.009 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|289581485|ref|YP_003479951.1| - 0.016 15.1 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|289581485|ref|YP_003479951.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|289581485|ref|YP_003479951.1| - 0.036 14.4 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.18 gi|289581485|ref|YP_003479951.1| - 0.04 13.2 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase YscJ_FliF_C PF08345.11 gi|289581485|ref|YP_003479951.1| - 0.085 13.2 9.8 0.24 11.8 9.8 1.8 1 0 0 1 1 1 0 Flagellar M-ring protein C-terminal AAA_18 PF13238.6 gi|289581485|ref|YP_003479951.1| - 0.092 13.3 0.0 0.31 11.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289581485|ref|YP_003479951.1| - 0.11 12.2 0.3 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain LytR_C PF13399.6 gi|289581485|ref|YP_003479951.1| - 1.5 9.8 6.4 0.19 12.8 0.6 2.5 3 0 0 3 3 1 0 LytR cell envelope-related transcriptional attenuator Dicty_REP PF05086.12 gi|289581485|ref|YP_003479951.1| - 5.1 4.9 6.0 6.6 4.6 6.0 1.2 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Prefoldin PF02996.17 gi|289581486|ref|YP_003479952.1| - 1.2e-25 89.7 5.7 1.2e-25 89.7 5.7 2.1 1 1 1 2 2 2 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|289581486|ref|YP_003479952.1| - 7e-08 32.4 22.0 0.00021 21.2 9.2 2.9 1 1 1 2 2 2 2 Prefoldin subunit ZapB PF06005.12 gi|289581486|ref|YP_003479952.1| - 2.3e-06 27.9 23.0 0.005 17.3 9.5 2.2 2 0 0 2 2 2 2 Cell division protein ZapB Fib_alpha PF08702.10 gi|289581486|ref|YP_003479952.1| - 1.8e-05 25.0 6.2 0.011 15.9 0.9 2.3 2 1 0 2 2 2 2 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|289581486|ref|YP_003479952.1| - 2.1e-05 24.9 15.7 0.0019 18.6 4.9 2.5 2 1 0 2 2 2 2 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|289581486|ref|YP_003479952.1| - 2.8e-05 24.7 8.8 0.041 14.5 0.4 2.2 2 0 0 2 2 2 2 Initiation control protein YabA MscS_porin PF12795.7 gi|289581486|ref|YP_003479952.1| - 3.9e-05 23.3 19.8 0.0051 16.4 7.5 2.1 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain Spc24 PF08286.11 gi|289581486|ref|YP_003479952.1| - 7.4e-05 22.9 13.1 0.032 14.5 0.6 2.3 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.9 gi|289581486|ref|YP_003479952.1| - 0.00021 21.3 18.9 0.011 15.8 6.5 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6_N PF17675.1 gi|289581486|ref|YP_003479952.1| - 0.00041 20.9 26.6 0.026 15.0 10.5 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region Ax_dynein_light PF10211.9 gi|289581486|ref|YP_003479952.1| - 0.00054 20.0 11.8 0.0051 16.8 2.9 2.1 2 0 0 2 2 2 1 Axonemal dynein light chain Cob_adeno_trans PF01923.18 gi|289581486|ref|YP_003479952.1| - 0.00058 20.0 8.4 0.0025 18.0 1.5 2.1 1 1 1 2 2 2 1 Cobalamin adenosyltransferase SKA2 PF16740.5 gi|289581486|ref|YP_003479952.1| - 0.00095 18.9 10.1 0.028 14.2 2.1 2.2 2 0 0 2 2 2 2 Spindle and kinetochore-associated protein 2 FlaC_arch PF05377.11 gi|289581486|ref|YP_003479952.1| - 0.00099 19.5 16.3 0.25 11.8 2.8 3.9 3 1 1 4 4 3 2 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|289581486|ref|YP_003479952.1| - 0.0013 18.8 20.0 0.025 14.6 6.3 2.4 2 0 0 2 2 2 2 TPR/MLP1/MLP2-like protein Tropomyosin_1 PF12718.7 gi|289581486|ref|YP_003479952.1| - 0.0013 18.9 18.2 0.0094 16.1 5.4 2.1 2 0 0 2 2 2 1 Tropomyosin like DUF4988 PF16378.5 gi|289581486|ref|YP_003479952.1| - 0.0015 18.2 3.3 0.69 9.5 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function GAS PF13851.6 gi|289581486|ref|YP_003479952.1| - 0.0017 17.7 14.6 0.05 13.0 2.4 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DivIC PF04977.15 gi|289581486|ref|YP_003479952.1| - 0.0018 18.0 23.9 0.044 13.6 6.6 3.0 2 1 1 3 3 3 2 Septum formation initiator DUF4407 PF14362.6 gi|289581486|ref|YP_003479952.1| - 0.0024 17.3 14.0 0.052 12.9 3.1 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|289581486|ref|YP_003479952.1| - 0.0027 16.7 18.2 0.1 11.4 5.0 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein TSC22 PF01166.18 gi|289581486|ref|YP_003479952.1| - 0.0029 17.9 1.7 0.0029 17.9 1.7 3.5 3 1 0 3 3 2 1 TSC-22/dip/bun family DHR10 PF18595.1 gi|289581486|ref|YP_003479952.1| - 0.003 17.6 20.3 0.043 13.9 6.8 2.2 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain Cep57_MT_bd PF06657.13 gi|289581486|ref|YP_003479952.1| - 0.003 18.0 15.8 0.0077 16.7 4.8 3.1 2 1 1 3 3 3 1 Centrosome microtubule-binding domain of Cep57 DUF4618 PF15397.6 gi|289581486|ref|YP_003479952.1| - 0.0037 16.7 14.2 0.025 14.0 2.7 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4618) DUF4337 PF14235.6 gi|289581486|ref|YP_003479952.1| - 0.0042 17.2 4.1 0.0042 17.2 4.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) DUF4201 PF13870.6 gi|289581486|ref|YP_003479952.1| - 0.0043 16.8 11.1 0.13 12.0 1.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4201) DUF1664 PF07889.12 gi|289581486|ref|YP_003479952.1| - 0.0045 17.0 14.3 0.075 13.1 2.3 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) Mod_r PF07200.13 gi|289581486|ref|YP_003479952.1| - 0.0067 16.5 13.7 0.13 12.4 3.0 2.1 2 0 0 2 2 2 2 Modifier of rudimentary (Mod(r)) protein Nmad5 PF18757.1 gi|289581486|ref|YP_003479952.1| - 0.0073 16.5 1.8 0.0098 16.1 1.8 1.2 1 0 0 1 1 1 1 Nucleotide modification associated domain 5 SlyX PF04102.12 gi|289581486|ref|YP_003479952.1| - 0.0084 16.7 26.4 0.57 10.8 10.8 3.2 3 0 0 3 3 3 1 SlyX Baculo_PEP_C PF04513.12 gi|289581486|ref|YP_003479952.1| - 0.0091 16.0 11.9 0.15 12.1 3.1 2.3 1 1 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.8 gi|289581486|ref|YP_003479952.1| - 0.01 15.2 21.1 0.091 12.1 6.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) RPW8 PF05659.11 gi|289581486|ref|YP_003479952.1| - 0.01 15.5 4.8 0.098 12.3 0.3 2.3 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Not3 PF04065.15 gi|289581486|ref|YP_003479952.1| - 0.011 15.2 11.3 0.019 14.4 2.1 2.2 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Synaptobrevin PF00957.21 gi|289581486|ref|YP_003479952.1| - 0.011 15.6 1.6 0.011 15.6 1.6 2.4 2 1 0 2 2 2 0 Synaptobrevin LRRFIP PF09738.9 gi|289581486|ref|YP_003479952.1| - 0.012 15.1 12.0 0.079 12.4 2.8 2.1 2 0 0 2 2 2 0 LRRFIP family Laminin_II PF06009.12 gi|289581486|ref|YP_003479952.1| - 0.013 15.5 9.0 0.21 11.6 1.9 2.2 2 0 0 2 2 2 0 Laminin Domain II Occludin_ELL PF07303.13 gi|289581486|ref|YP_003479952.1| - 0.014 16.1 7.7 0.54 11.0 1.2 2.3 2 0 0 2 2 2 0 Occludin homology domain Paralemmin PF03285.15 gi|289581486|ref|YP_003479952.1| - 0.014 15.0 10.8 0.14 11.7 2.8 2.1 2 0 0 2 2 2 0 Paralemmin TMF_TATA_bd PF12325.8 gi|289581486|ref|YP_003479952.1| - 0.014 15.6 16.0 0.44 10.8 4.8 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ORF6C PF10552.9 gi|289581486|ref|YP_003479952.1| - 0.015 15.4 9.6 0.095 12.8 1.1 2.4 2 0 0 2 2 2 0 ORF6C domain GrpE PF01025.19 gi|289581486|ref|YP_003479952.1| - 0.015 15.0 15.7 0.17 11.6 6.1 2.2 2 0 0 2 2 2 0 GrpE GARP PF16731.5 gi|289581486|ref|YP_003479952.1| - 0.016 14.9 8.8 0.23 11.1 0.8 2.2 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma SHE3 PF17078.5 gi|289581486|ref|YP_003479952.1| - 0.016 15.0 11.2 0.018 14.7 1.6 2.1 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 HOOK PF05622.12 gi|289581486|ref|YP_003479952.1| - 0.018 13.2 20.7 1 7.4 20.7 2.0 1 1 0 1 1 1 0 HOOK protein Uds1 PF15456.6 gi|289581486|ref|YP_003479952.1| - 0.02 15.1 8.4 0.06 13.5 8.4 1.9 1 1 0 1 1 1 0 Up-regulated During Septation bZIP_1 PF00170.21 gi|289581486|ref|YP_003479952.1| - 0.025 14.7 12.4 0.065 13.3 3.0 2.8 2 1 0 2 2 2 0 bZIP transcription factor XhlA PF10779.9 gi|289581486|ref|YP_003479952.1| - 0.025 14.8 12.6 0.088 13.0 3.2 2.5 2 0 0 2 2 2 0 Haemolysin XhlA DUF1192 PF06698.11 gi|289581486|ref|YP_003479952.1| - 0.025 14.6 13.8 0.083 13.0 2.1 2.9 3 1 0 3 3 2 0 Protein of unknown function (DUF1192) DUF2730 PF10805.8 gi|289581486|ref|YP_003479952.1| - 0.026 14.6 7.5 0.78 9.9 1.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF3287 PF11690.8 gi|289581486|ref|YP_003479952.1| - 0.027 14.2 0.6 5.5 6.7 0.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3287) FapA PF03961.13 gi|289581486|ref|YP_003479952.1| - 0.029 13.0 11.5 0.29 9.7 1.0 2.0 1 1 0 2 2 2 0 Flagellar Assembly Protein A DUF2205 PF10224.9 gi|289581486|ref|YP_003479952.1| - 0.03 14.3 17.4 0.065 13.2 5.0 2.4 2 0 0 2 2 2 0 Short coiled-coil protein CASP_C PF08172.12 gi|289581486|ref|YP_003479952.1| - 0.031 13.6 11.7 0.086 12.2 11.7 1.6 1 1 0 1 1 1 0 CASP C terminal BicD PF09730.9 gi|289581486|ref|YP_003479952.1| - 0.032 12.7 10.9 0.04 12.3 10.9 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D AAA_13 PF13166.6 gi|289581486|ref|YP_003479952.1| - 0.034 12.8 15.7 0.073 11.7 4.8 2.0 2 0 0 2 2 2 0 AAA domain Cytochrom_C_2 PF01322.20 gi|289581486|ref|YP_003479952.1| - 0.036 15.0 1.8 0.036 15.0 1.8 2.0 1 1 1 2 2 2 0 Cytochrome C' Sec34 PF04136.15 gi|289581486|ref|YP_003479952.1| - 0.037 13.9 14.3 0.12 12.2 3.9 2.2 2 0 0 2 2 2 0 Sec34-like family STAT_alpha PF01017.20 gi|289581486|ref|YP_003479952.1| - 0.042 13.7 14.7 0.053 13.4 4.9 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain FliD_C PF07195.12 gi|289581486|ref|YP_003479952.1| - 0.053 12.9 13.2 0.018 14.4 5.4 2.5 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Jnk-SapK_ap_N PF09744.9 gi|289581486|ref|YP_003479952.1| - 0.053 13.7 17.3 0.066 13.4 5.4 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 KASH_CCD PF14662.6 gi|289581486|ref|YP_003479952.1| - 0.057 13.2 22.1 0.43 10.4 3.6 2.3 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Lebercilin PF15619.6 gi|289581486|ref|YP_003479952.1| - 0.062 13.0 15.3 0.76 9.4 2.7 2.2 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease SKA1 PF07160.12 gi|289581486|ref|YP_003479952.1| - 0.064 13.1 11.6 0.65 9.8 3.3 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 FUSC PF04632.12 gi|289581486|ref|YP_003479952.1| - 0.069 11.7 7.2 0.088 11.3 7.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Tektin PF03148.14 gi|289581486|ref|YP_003479952.1| - 0.071 11.9 15.0 0.076 11.8 3.4 2.2 2 0 0 2 2 2 0 Tektin family ApoLp-III PF07464.11 gi|289581486|ref|YP_003479952.1| - 0.083 13.0 12.8 0.14 12.2 1.6 2.5 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) MAD PF05557.13 gi|289581486|ref|YP_003479952.1| - 0.088 11.2 15.7 0.094 11.1 3.9 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein HAUS-augmin3 PF14932.6 gi|289581486|ref|YP_003479952.1| - 0.09 12.3 17.0 0.043 13.4 4.5 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Swi5 PF07061.11 gi|289581486|ref|YP_003479952.1| - 0.092 12.8 18.6 0.13 12.4 4.7 2.8 2 1 1 3 3 3 0 Swi5 Dor1 PF04124.12 gi|289581486|ref|YP_003479952.1| - 0.13 10.9 7.3 0.56 8.8 0.8 2.1 2 0 0 2 2 2 0 Dor1-like family Seryl_tRNA_N PF02403.22 gi|289581486|ref|YP_003479952.1| - 0.13 12.5 13.9 1.3 9.3 2.0 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4515 PF14988.6 gi|289581486|ref|YP_003479952.1| - 0.13 12.1 19.0 1.4 8.7 19.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) ATG16 PF08614.11 gi|289581486|ref|YP_003479952.1| - 0.14 12.4 17.6 0.59 10.3 4.3 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) CdvA PF18822.1 gi|289581486|ref|YP_003479952.1| - 0.15 11.9 16.4 0.91 9.4 1.6 3.6 2 2 1 3 3 3 0 CdvA-like coiled-coil domain DUF4164 PF13747.6 gi|289581486|ref|YP_003479952.1| - 0.15 12.4 16.1 1.4 9.3 6.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Tmemb_cc2 PF10267.9 gi|289581486|ref|YP_003479952.1| - 0.15 11.1 12.5 0.08 12.1 3.2 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DASH_Dam1 PF08653.10 gi|289581486|ref|YP_003479952.1| - 0.16 11.8 8.4 1 9.2 1.7 3.1 3 2 0 3 3 2 0 DASH complex subunit Dam1 FliJ PF02050.16 gi|289581486|ref|YP_003479952.1| - 0.17 12.1 21.6 0.2 11.9 4.5 2.4 2 1 0 2 2 2 0 Flagellar FliJ protein DUF4140 PF13600.6 gi|289581486|ref|YP_003479952.1| - 0.18 12.3 18.9 2 8.9 6.9 3.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF5082 PF16888.5 gi|289581486|ref|YP_003479952.1| - 0.18 12.1 20.3 0.17 12.2 4.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|289581486|ref|YP_003479952.1| - 0.19 12.1 21.8 0.9 9.9 5.5 2.9 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|289581486|ref|YP_003479952.1| - 0.19 12.0 8.6 3.3 8.0 2.2 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF2353 PF09789.9 gi|289581486|ref|YP_003479952.1| - 0.19 11.1 12.3 0.62 9.4 10.6 2.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) TBK1_CCD1 PF18394.1 gi|289581486|ref|YP_003479952.1| - 0.2 11.2 6.4 1.2 8.7 1.1 2.2 2 0 0 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 EzrA PF06160.12 gi|289581486|ref|YP_003479952.1| - 0.2 9.8 16.2 0.22 9.7 4.3 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF724 PF05266.14 gi|289581486|ref|YP_003479952.1| - 0.21 11.4 16.6 0.91 9.3 1.9 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF724) Muted PF14942.6 gi|289581486|ref|YP_003479952.1| - 0.21 11.9 12.8 1.4 9.2 2.2 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF812 PF05667.11 gi|289581486|ref|YP_003479952.1| - 0.22 10.4 25.1 0.65 8.8 6.5 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF812) V_ATPase_I PF01496.19 gi|289581486|ref|YP_003479952.1| - 0.24 9.3 9.3 0.16 9.9 1.0 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family ERM PF00769.19 gi|289581486|ref|YP_003479952.1| - 0.25 11.1 21.3 0.21 11.4 8.8 2.2 2 0 0 2 2 2 0 Ezrin/radixin/moesin family ADIP PF11559.8 gi|289581486|ref|YP_003479952.1| - 0.25 11.4 14.1 0.075 13.1 2.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Csm1_N PF18504.1 gi|289581486|ref|YP_003479952.1| - 0.26 11.7 20.4 3 8.2 6.3 3.1 3 1 0 3 3 2 0 Csm1 N-terminal domain HlyD_2 PF12700.7 gi|289581486|ref|YP_003479952.1| - 0.26 10.0 12.6 0.94 8.1 2.3 2.1 2 0 0 2 2 2 0 HlyD family secretion protein CLZ PF16526.5 gi|289581486|ref|YP_003479952.1| - 0.27 11.6 14.3 0.28 11.6 3.6 3.1 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Cluap1 PF10234.9 gi|289581486|ref|YP_003479952.1| - 0.28 10.6 12.4 0.61 9.4 2.5 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 PI3K_P85_iSH2 PF16454.5 gi|289581486|ref|YP_003479952.1| - 0.28 10.8 17.0 2.5 7.7 17.0 2.0 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HemX PF04375.14 gi|289581486|ref|YP_003479952.1| - 0.29 10.4 22.6 2.6e+02 0.7 22.6 2.0 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Syntaxin-6_N PF09177.11 gi|289581486|ref|YP_003479952.1| - 0.29 11.7 14.4 1.7 9.2 1.0 2.6 2 1 0 2 2 2 0 Syntaxin 6, N-terminal FH2 PF02181.23 gi|289581486|ref|YP_003479952.1| - 0.29 10.2 8.0 0.56 9.3 1.4 2.2 2 0 0 2 2 2 0 Formin Homology 2 Domain MIP-T3_C PF17749.1 gi|289581486|ref|YP_003479952.1| - 0.3 11.0 17.1 2.9 7.8 7.3 2.2 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region DUF4200 PF13863.6 gi|289581486|ref|YP_003479952.1| - 0.33 11.4 17.2 1.1 9.7 5.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Sec8_exocyst PF04048.14 gi|289581486|ref|YP_003479952.1| - 0.34 10.8 8.7 0.095 12.6 2.2 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain CENP-Q PF13094.6 gi|289581486|ref|YP_003479952.1| - 0.35 11.1 16.1 0.17 12.0 4.3 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit TFR_dimer PF04253.15 gi|289581486|ref|YP_003479952.1| - 0.35 11.0 5.1 1.3 9.1 1.2 2.4 1 1 0 2 2 2 0 Transferrin receptor-like dimerisation domain Vps51 PF08700.11 gi|289581486|ref|YP_003479952.1| - 0.38 10.9 8.5 6.5 6.9 1.2 3.3 2 2 1 3 3 3 0 Vps51/Vps67 YlqD PF11068.8 gi|289581486|ref|YP_003479952.1| - 0.38 11.1 21.3 1.1 9.6 7.4 2.4 2 0 0 2 2 2 0 YlqD protein YkyA PF10368.9 gi|289581486|ref|YP_003479952.1| - 0.39 10.4 21.4 1.4 8.6 5.5 2.1 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein TraF_2 PF13729.6 gi|289581486|ref|YP_003479952.1| - 0.42 9.9 10.1 0.35 10.2 3.3 2.3 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Nup54 PF13874.6 gi|289581486|ref|YP_003479952.1| - 0.44 10.7 9.5 2.3 8.3 1.0 2.3 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF1465 PF07323.12 gi|289581486|ref|YP_003479952.1| - 0.44 10.4 8.4 1 9.2 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) LPP PF04728.13 gi|289581486|ref|YP_003479952.1| - 0.47 10.9 18.9 0.33 11.4 2.8 2.9 3 0 0 3 3 2 0 Lipoprotein leucine-zipper DUF4763 PF15960.5 gi|289581486|ref|YP_003479952.1| - 0.48 9.7 14.7 0.27 10.5 3.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) HalX PF08663.10 gi|289581486|ref|YP_003479952.1| - 0.49 10.7 25.7 0.16 12.3 3.6 3.7 2 1 1 3 3 3 0 HalX domain TMF_DNA_bd PF12329.8 gi|289581486|ref|YP_003479952.1| - 0.49 10.4 18.8 2.7 8.0 5.6 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding FmiP_Thoc5 PF09766.9 gi|289581486|ref|YP_003479952.1| - 0.51 9.6 10.6 0.74 9.0 1.5 2.0 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 DUF1877 PF08974.10 gi|289581486|ref|YP_003479952.1| - 0.51 10.4 9.7 0.07 13.2 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1877) BLI1 PF17324.2 gi|289581486|ref|YP_003479952.1| - 0.51 11.0 11.1 0.37 11.5 6.7 2.2 1 1 1 2 2 2 0 BLOC-1 interactor 1 Alanine_zipper PF11839.8 gi|289581486|ref|YP_003479952.1| - 0.53 10.7 10.3 0.69 10.3 2.2 2.7 2 0 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein Nsp1_C PF05064.13 gi|289581486|ref|YP_003479952.1| - 0.53 10.1 17.9 1.9 8.3 5.2 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Med4 PF10018.9 gi|289581486|ref|YP_003479952.1| - 0.54 9.9 10.5 0.59 9.8 1.7 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Vps52 PF04129.12 gi|289581486|ref|YP_003479952.1| - 0.58 8.8 9.8 0.65 8.7 1.3 2.0 2 0 0 2 2 2 0 Vps52 / Sac2 family T2SSM PF04612.12 gi|289581486|ref|YP_003479952.1| - 0.58 10.2 10.5 4.3 7.4 0.8 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M COG2 PF06148.11 gi|289581486|ref|YP_003479952.1| - 0.63 10.1 12.6 0.21 11.7 1.3 2.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Uso1_p115_C PF04871.13 gi|289581486|ref|YP_003479952.1| - 0.63 10.4 19.5 2.8 8.3 8.3 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4446 PF14584.6 gi|289581486|ref|YP_003479952.1| - 0.65 10.0 11.2 0.7 9.9 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) FbpA PF05833.11 gi|289581486|ref|YP_003479952.1| - 0.66 8.7 8.9 0.76 8.5 3.1 2.1 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) RmuC PF02646.16 gi|289581486|ref|YP_003479952.1| - 0.66 9.1 12.8 2.1 7.4 2.4 2.1 2 0 0 2 2 2 0 RmuC family DUF3552 PF12072.8 gi|289581486|ref|YP_003479952.1| - 0.67 9.3 20.8 0.19 11.1 8.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Spectrin PF00435.21 gi|289581486|ref|YP_003479952.1| - 0.67 10.5 21.0 1.7 9.2 4.0 2.3 2 1 0 2 2 2 0 Spectrin repeat PspA_IM30 PF04012.12 gi|289581486|ref|YP_003479952.1| - 0.71 9.4 20.5 0.5 9.9 7.1 2.3 2 1 0 2 2 2 0 PspA/IM30 family T3SSipB PF16535.5 gi|289581486|ref|YP_003479952.1| - 0.71 10.3 11.3 1.3 9.5 0.9 2.1 2 0 0 2 2 2 0 Type III cell invasion protein SipB Dynamitin PF04912.14 gi|289581486|ref|YP_003479952.1| - 0.8 9.0 20.4 0.29 10.4 7.3 2.0 1 1 1 2 2 2 0 Dynamitin Phage_GP20 PF06810.11 gi|289581486|ref|YP_003479952.1| - 0.83 9.5 20.1 1.5 8.6 9.4 2.7 2 1 0 2 2 2 0 Phage minor structural protein GP20 DUF4795 PF16043.5 gi|289581486|ref|YP_003479952.1| - 0.83 9.2 18.2 1.5 8.4 3.9 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) KfrA_N PF11740.8 gi|289581486|ref|YP_003479952.1| - 0.87 10.3 25.2 0.8 10.4 7.8 3.1 1 1 3 4 4 3 0 Plasmid replication region DNA-binding N-term DivIVA PF05103.13 gi|289581486|ref|YP_003479952.1| - 0.89 9.6 15.6 1.9 8.6 4.6 2.3 2 0 0 2 2 2 0 DivIVA protein NBD94 PF16830.5 gi|289581486|ref|YP_003479952.1| - 0.99 9.8 7.2 8.7 6.8 0.5 2.6 3 0 0 3 3 2 0 Nucleotide-Binding Domain 94 of RH IFT57 PF10498.9 gi|289581486|ref|YP_003479952.1| - 1 8.3 15.6 0.24 10.3 3.7 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 WXG100 PF06013.12 gi|289581486|ref|YP_003479952.1| - 1 9.6 17.6 4.6 7.5 1.4 3.3 2 2 1 3 3 3 0 Proteins of 100 residues with WXG TEX13 PF15186.6 gi|289581486|ref|YP_003479952.1| - 1 9.0 13.5 0.38 10.4 3.0 2.1 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family DUF1515 PF07439.11 gi|289581486|ref|YP_003479952.1| - 1.1 9.4 8.9 0.21 11.6 1.6 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) ATP-synt_D PF01813.17 gi|289581486|ref|YP_003479952.1| - 1.1 9.1 8.1 1.2 8.9 1.6 2.3 2 1 0 2 2 2 0 ATP synthase subunit D Fzo_mitofusin PF04799.13 gi|289581486|ref|YP_003479952.1| - 1.1 8.8 11.7 0.79 9.3 0.9 2.2 2 0 0 2 2 2 0 fzo-like conserved region MCU PF04678.13 gi|289581486|ref|YP_003479952.1| - 1.1 9.3 9.7 0.25 11.4 1.7 2.1 1 1 1 2 2 2 0 Mitochondrial calcium uniporter PEARLI-4 PF05278.12 gi|289581486|ref|YP_003479952.1| - 1.1 8.7 8.6 6.4 6.3 2.8 2.0 1 1 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF1978 PF09321.10 gi|289581486|ref|YP_003479952.1| - 1.2 8.4 11.9 1.1 8.5 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1978) Fez1 PF06818.15 gi|289581486|ref|YP_003479952.1| - 1.2 9.5 16.2 5.9 7.3 16.2 1.8 1 1 0 1 1 1 0 Fez1 GCN5L1 PF06320.13 gi|289581486|ref|YP_003479952.1| - 1.3 9.2 11.9 3.8 7.7 3.8 2.3 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Fmp27_WPPW PF10359.9 gi|289581486|ref|YP_003479952.1| - 1.3 7.8 14.9 1.2 7.9 6.2 2.0 1 1 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DASH_Spc19 PF08287.11 gi|289581486|ref|YP_003479952.1| - 1.3 8.9 15.8 1.2 9.0 6.0 2.3 1 1 1 2 2 2 0 Spc19 SAS4 PF15460.6 gi|289581486|ref|YP_003479952.1| - 1.4 9.1 13.2 0.24 11.5 4.1 2.7 2 2 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 COG6 PF06419.11 gi|289581486|ref|YP_003479952.1| - 1.4 7.0 13.2 1.4 7.0 3.4 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Fungal_trans_2 PF11951.8 gi|289581486|ref|YP_003479952.1| - 1.4 7.6 4.6 3.2 6.5 0.3 2.0 2 0 0 2 2 2 0 Fungal specific transcription factor domain Allexi_40kDa PF05549.11 gi|289581486|ref|YP_003479952.1| - 1.5 8.3 7.0 23 4.4 0.8 2.0 1 1 0 1 1 1 0 Allexivirus 40kDa protein ISG65-75 PF11727.8 gi|289581486|ref|YP_003479952.1| - 1.5 8.0 6.2 2.1 7.5 1.2 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein BRE1 PF08647.11 gi|289581486|ref|YP_003479952.1| - 1.5 8.9 19.2 0.44 10.6 3.0 2.8 2 1 1 3 3 3 0 BRE1 E3 ubiquitin ligase USP8_interact PF08941.10 gi|289581486|ref|YP_003479952.1| - 1.6 8.5 7.5 1 9.1 0.2 2.2 2 0 0 2 2 2 0 USP8 interacting DUF16 PF01519.16 gi|289581486|ref|YP_003479952.1| - 1.6 9.2 17.1 1.6 9.3 3.3 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 GPS2_interact PF15784.5 gi|289581486|ref|YP_003479952.1| - 1.7 9.2 11.4 0.4 11.2 2.9 2.2 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain Prominin PF05478.11 gi|289581486|ref|YP_003479952.1| - 1.7 6.5 6.8 3.2 5.6 0.5 2.0 2 0 0 2 2 2 0 Prominin FlxA PF14282.6 gi|289581486|ref|YP_003479952.1| - 1.7 8.7 34.0 3.9 7.5 9.9 2.7 2 1 0 2 2 2 0 FlxA-like protein HMMR_N PF15905.5 gi|289581486|ref|YP_003479952.1| - 2 7.8 19.7 4.2 6.8 19.7 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal KLRAQ PF10205.9 gi|289581486|ref|YP_003479952.1| - 2.1 8.6 14.1 0.56 10.5 3.8 2.1 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein MctB PF11382.8 gi|289581486|ref|YP_003479952.1| - 2.2 7.9 13.9 2 8.0 3.5 2.2 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB Golgin_A5 PF09787.9 gi|289581486|ref|YP_003479952.1| - 2.2 7.7 20.0 1.1 8.6 6.9 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 PhoU PF01895.19 gi|289581486|ref|YP_003479952.1| - 2.3 8.7 10.2 0.51 10.8 3.5 2.5 2 2 0 2 2 2 0 PhoU domain kleA_kleC PF17383.2 gi|289581486|ref|YP_003479952.1| - 2.5 8.5 6.6 2.5 8.5 1.5 2.7 2 2 0 2 2 2 0 Uncharacterized KorC regulated protein A Med10 PF09748.9 gi|289581486|ref|YP_003479952.1| - 2.7 8.0 8.4 3 7.8 2.2 2.4 2 1 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Leu_zip PF15294.6 gi|289581486|ref|YP_003479952.1| - 2.7 7.4 13.9 5.4 6.5 1.2 2.0 1 1 1 2 2 2 0 Leucine zipper CENP-H PF05837.12 gi|289581486|ref|YP_003479952.1| - 2.8 8.4 17.8 1.3 9.4 3.5 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) CorA PF01544.18 gi|289581486|ref|YP_003479952.1| - 3.2 7.0 14.4 28 3.9 14.4 2.1 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein PRKG1_interact PF15898.5 gi|289581486|ref|YP_003479952.1| - 3.2 8.7 16.3 3.7 8.5 2.3 2.4 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain GTP-bdg_M PF16360.5 gi|289581486|ref|YP_003479952.1| - 3.4 8.3 12.1 1.8 9.2 0.8 3.0 2 1 1 3 3 2 0 GTP-binding GTPase Middle Region ABC_tran_CTD PF16326.5 gi|289581486|ref|YP_003479952.1| - 3.9 7.8 31.1 4.2 7.7 7.1 3.4 2 2 1 3 3 3 0 ABC transporter C-terminal domain Troponin PF00992.20 gi|289581486|ref|YP_003479952.1| - 4.3 7.6 14.3 7.5 6.9 3.0 2.2 2 0 0 2 2 2 0 Troponin DUF4349 PF14257.6 gi|289581486|ref|YP_003479952.1| - 4.4 6.7 21.2 1.7 8.0 10.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Cep57_CLD_2 PF14197.6 gi|289581486|ref|YP_003479952.1| - 4.5 7.4 14.7 1.8 8.7 2.3 2.7 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 V-SNARE PF05008.15 gi|289581486|ref|YP_003479952.1| - 4.5 7.7 20.9 6.9 7.1 5.0 2.5 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Filament PF00038.21 gi|289581486|ref|YP_003479952.1| - 4.5 6.7 21.0 1.7 8.2 5.9 2.1 1 1 1 2 2 2 0 Intermediate filament protein Rho_Binding PF08912.11 gi|289581486|ref|YP_003479952.1| - 4.6 8.1 21.8 4.4 8.2 4.8 2.7 2 1 0 2 2 2 0 Rho Binding TolA_bind_tri PF16331.5 gi|289581486|ref|YP_003479952.1| - 5 7.3 31.8 0.11 12.5 7.9 3.0 2 1 0 2 2 1 0 TolA binding protein trimerisation Atg14 PF10186.9 gi|289581486|ref|YP_003479952.1| - 6.8 5.7 15.6 4.8 6.2 5.6 2.0 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_lid_9 PF17871.1 gi|289581486|ref|YP_003479952.1| - 6.9 6.6 14.5 6.3 6.8 5.2 2.4 2 1 0 2 2 2 0 AAA lid domain End3 PF12761.7 gi|289581486|ref|YP_003479952.1| - 7.1 6.7 17.2 9.7 6.3 3.2 2.2 1 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 TMCO5 PF14992.6 gi|289581486|ref|YP_003479952.1| - 7.1 6.1 19.1 12 5.4 19.1 1.3 1 1 0 1 1 1 0 TMCO5 family TMPIT PF07851.13 gi|289581486|ref|YP_003479952.1| - 7.5 5.7 12.5 3 7.0 1.1 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF2408 PF10303.9 gi|289581486|ref|YP_003479952.1| - 7.9 7.0 12.3 46 4.6 12.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) COMM_domain PF07258.14 gi|289581486|ref|YP_003479952.1| - 8.3 6.6 9.2 0.29 11.3 1.7 2.4 2 1 0 2 2 1 0 COMM domain adh_short PF00106.25 gi|289581486|ref|YP_003479952.1| - 8.5 5.8 6.8 9.2 5.7 0.7 2.1 2 0 0 2 2 2 0 short chain dehydrogenase DLP_helical PF18709.1 gi|289581486|ref|YP_003479952.1| - 9 5.4 11.9 4.3 6.4 2.7 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain DUF2203 PF09969.9 gi|289581486|ref|YP_003479952.1| - 9.1 7.0 12.8 7.4 7.3 1.4 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Exonuc_VII_L PF02601.15 gi|289581486|ref|YP_003479952.1| - 9.1 5.7 12.1 75 2.7 12.1 1.9 1 1 0 1 1 1 0 Exonuclease VII, large subunit GPDPase_memb PF10110.9 gi|289581487|ref|YP_003479953.1| - 0.0077 15.0 4.5 0.087 11.6 0.2 2.2 2 0 0 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase TetR_C_16 PF17920.1 gi|289581487|ref|YP_003479953.1| - 0.025 14.8 0.2 0.068 13.4 0.2 1.8 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain eIF-6 PF01912.18 gi|289581488|ref|YP_003479954.1| - 3.2e-73 245.3 0.0 3.8e-73 245.1 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|289581489|ref|YP_003479955.1| - 8.7e-09 35.5 0.1 1.1e-08 35.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e PsaF PF17550.2 gi|289581489|ref|YP_003479955.1| - 0.19 11.2 0.0 0.23 11.0 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function Ribosomal_L39 PF00832.20 gi|289581490|ref|YP_003479956.1| - 2.1e-20 72.0 8.3 2.5e-20 71.8 8.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DrsE PF02635.15 gi|289581492|ref|YP_003479958.1| - 1.8e-08 34.7 0.0 2.3e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|289581492|ref|YP_003479958.1| - 0.029 14.3 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family LigT_PEase PF02834.16 gi|289581495|ref|YP_003479961.1| - 2.5e-23 82.1 0.0 1.2e-12 47.9 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|289581495|ref|YP_003479961.1| - 1.4e-17 64.0 0.1 1.7e-17 63.7 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|289581495|ref|YP_003479961.1| - 2.9e-08 33.9 0.0 3.6e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|289581495|ref|YP_003479961.1| - 0.0046 16.5 0.0 0.0056 16.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein TPR_1 PF00515.28 gi|289581496|ref|YP_003479962.1| - 8.7e-21 72.8 8.7 7.9e-05 22.3 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|289581496|ref|YP_003479962.1| - 2.2e-16 58.5 19.2 0.01 15.9 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|289581496|ref|YP_003479962.1| - 1.4e-14 54.1 21.2 8.8e-10 38.7 5.5 4.0 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|289581496|ref|YP_003479962.1| - 1.6e-14 54.3 15.4 2.8e-07 31.1 2.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|289581496|ref|YP_003479962.1| - 7.2e-14 50.8 8.2 0.007 16.5 0.9 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|289581496|ref|YP_003479962.1| - 7.6e-09 35.4 0.2 0.0034 17.6 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|289581496|ref|YP_003479962.1| - 7e-08 32.0 16.6 0.0026 17.7 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|289581496|ref|YP_003479962.1| - 8.6e-08 32.4 21.5 0.0023 18.6 1.3 5.2 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|289581496|ref|YP_003479962.1| - 3.1e-07 30.4 12.7 0.018 15.2 0.3 4.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|289581496|ref|YP_003479962.1| - 8.2e-07 28.7 23.9 0.0039 17.0 0.7 5.3 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|289581496|ref|YP_003479962.1| - 2.9e-06 27.4 12.4 0.013 16.1 1.8 4.7 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|289581496|ref|YP_003479962.1| - 1.1e-05 25.0 7.3 0.18 11.5 0.0 4.9 2 1 3 5 5 5 2 TPR repeat ANAPC3 PF12895.7 gi|289581496|ref|YP_003479962.1| - 0.0001 22.4 2.6 0.055 13.7 0.2 2.7 1 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|289581496|ref|YP_003479962.1| - 0.0002 21.8 13.5 0.11 13.0 0.0 3.6 1 1 1 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|289581496|ref|YP_003479962.1| - 0.00084 18.4 0.2 0.0019 17.2 0.1 1.6 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|289581496|ref|YP_003479962.1| - 0.0089 16.6 7.0 16 6.4 0.3 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat Mad3_BUB1_I PF08311.12 gi|289581496|ref|YP_003479962.1| - 0.021 14.8 1.7 0.72 9.8 0.2 2.4 1 1 1 2 2 2 0 Mad3/BUB1 homology region 1 TPR_5 PF12688.7 gi|289581496|ref|YP_003479962.1| - 0.039 14.2 1.0 0.74 10.1 0.1 2.3 1 1 1 2 2 2 0 Tetratrico peptide repeat ANAPC5 PF12862.7 gi|289581496|ref|YP_003479962.1| - 0.041 14.0 8.4 0.24 11.5 0.9 3.6 1 1 2 3 3 3 0 Anaphase-promoting complex subunit 5 YfiO PF13525.6 gi|289581496|ref|YP_003479962.1| - 0.075 12.8 2.1 0.3 10.8 0.3 2.1 1 1 1 2 2 2 0 Outer membrane lipoprotein SPOB_a PF14689.6 gi|289581496|ref|YP_003479962.1| - 0.11 12.3 2.4 2.6 7.8 0.1 2.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_20 PF14561.6 gi|289581496|ref|YP_003479962.1| - 0.24 11.8 5.0 1.7 9.1 0.6 2.6 1 1 1 2 2 2 0 Tetratricopeptide repeat DUF424 PF04242.13 gi|289581497|ref|YP_003479963.1| - 1.6e-29 102.0 0.1 1.8e-29 101.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) PQQ_3 PF13570.6 gi|289581499|ref|YP_003479965.1| - 3.8e-37 125.8 44.3 1.9e-05 25.0 2.9 9.2 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|289581499|ref|YP_003479965.1| - 2.8e-30 105.7 15.2 2.1e-15 57.0 0.6 4.3 1 1 2 3 3 3 2 PQQ-like domain PQQ PF01011.21 gi|289581499|ref|YP_003479965.1| - 3.5e-15 55.1 14.4 3.7e-05 23.4 0.1 6.9 7 0 0 7 7 7 4 PQQ enzyme repeat DUF4934 PF16288.5 gi|289581499|ref|YP_003479965.1| - 0.2 11.6 0.0 0.44 10.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) Rad51 PF08423.11 gi|289581501|ref|YP_003479967.1| - 2.1e-75 253.3 0.1 1.5e-74 250.5 0.1 1.9 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|289581501|ref|YP_003479967.1| - 6.3e-12 45.9 0.0 1.7e-11 44.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|289581501|ref|YP_003479967.1| - 3.4e-08 33.0 0.0 0.00055 19.7 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|289581501|ref|YP_003479967.1| - 6e-08 32.5 0.0 9.7e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|289581501|ref|YP_003479967.1| - 1e-07 31.7 0.0 0.0037 16.8 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.7 gi|289581501|ref|YP_003479967.1| - 1.1e-06 28.6 0.0 4.7e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|289581501|ref|YP_003479967.1| - 3.7e-05 23.9 0.0 0.00014 22.1 0.0 2.0 2 0 0 2 2 1 1 Pathogenicity locus ATPase PF06745.13 gi|289581501|ref|YP_003479967.1| - 0.00019 20.9 0.1 0.00085 18.7 0.1 1.9 2 0 0 2 2 2 1 KaiC DNA_pol_lambd_f PF10391.9 gi|289581501|ref|YP_003479967.1| - 0.00025 20.8 0.0 0.0014 18.4 0.0 2.3 2 1 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|289581501|ref|YP_003479967.1| - 0.0078 16.5 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) IMS_HHH PF11798.8 gi|289581501|ref|YP_003479967.1| - 0.029 14.7 0.0 0.12 12.7 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif HHH_3 PF12836.7 gi|289581501|ref|YP_003479967.1| - 0.036 14.3 0.0 14 6.0 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif BAF PF02961.14 gi|289581501|ref|YP_003479967.1| - 0.073 13.5 0.0 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 Barrier to autointegration factor ATPase_2 PF01637.18 gi|289581501|ref|YP_003479967.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TadE PF07811.12 gi|289581502|ref|YP_003479968.1| - 1.7 9.0 6.0 2.5 8.4 2.6 2.4 1 1 1 2 2 2 0 TadE-like protein NifU_N PF01592.16 gi|289581503|ref|YP_003479969.1| - 9.4e-28 96.9 0.1 1.2e-27 96.6 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|289581503|ref|YP_003479969.1| - 0.04 13.8 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain DUF3169 PF11368.8 gi|289581504|ref|YP_003479970.1| - 0.22 11.0 0.2 0.24 10.9 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF4342 PF14242.6 gi|289581504|ref|YP_003479970.1| - 0.45 10.5 3.6 0.61 10.1 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) HD PF01966.22 gi|289581505|ref|YP_003479971.1| - 1.1e-09 38.6 3.2 2.1e-09 37.6 3.2 1.4 1 0 0 1 1 1 1 HD domain Peripla_BP_2 PF01497.18 gi|289581506|ref|YP_003479972.1| - 1.8e-28 99.7 0.0 2.5e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|289581507|ref|YP_003479973.1| - 1.1e-22 80.8 4.0 1.6e-22 80.2 4.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Trypsin PF00089.26 gi|289581508|ref|YP_003479974.1| - 0.0049 16.7 0.7 0.12 12.2 0.7 2.5 1 1 0 1 1 1 1 Trypsin DUF1296 PF06972.11 gi|289581508|ref|YP_003479974.1| - 0.029 14.5 0.4 0.9 9.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1296) 5HT_transport_N PF03491.13 gi|289581508|ref|YP_003479974.1| - 0.16 12.2 0.6 0.49 10.6 0.6 1.8 1 0 0 1 1 1 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus Aminotran_5 PF00266.19 gi|289581509|ref|YP_003479975.1| - 7e-148 492.5 0.0 8e-148 492.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|289581509|ref|YP_003479975.1| - 6.6e-08 32.2 0.0 8.5e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|289581509|ref|YP_003479975.1| - 3.8e-07 29.7 0.3 6.2e-07 29.0 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|289581509|ref|YP_003479975.1| - 0.0028 16.7 0.1 0.007 15.4 0.1 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase TMEM40 PF15817.5 gi|289581510|ref|YP_003479976.1| - 0.035 13.9 0.0 0.075 12.8 0.0 1.6 1 1 1 2 2 2 0 Transmembrane protein 40 family SWIM PF04434.17 gi|289581511|ref|YP_003479977.1| - 0.0001 21.9 0.4 0.00039 20.0 0.1 2.0 2 0 0 2 2 2 1 SWIM zinc finger Acyl-CoA_dh_1 PF00441.24 gi|289581512|ref|YP_003479978.1| - 1.3e-30 106.5 3.4 1.3e-30 106.5 3.4 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|289581512|ref|YP_003479978.1| - 2.9e-20 72.8 0.0 8.8e-20 71.2 0.0 1.8 1 0 0 1 1 1 1 Adaptive response protein AidB N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289581512|ref|YP_003479978.1| - 3.6e-16 59.1 0.0 4.5e-15 55.6 0.0 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289581512|ref|YP_003479978.1| - 6.6e-08 32.9 1.6 6.6e-08 32.9 1.6 2.4 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Mpt_N PF09176.11 gi|289581512|ref|YP_003479978.1| - 0.086 13.0 0.0 1.8 8.7 0.0 2.5 2 0 0 2 2 2 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal Hjc PF01870.18 gi|289581514|ref|YP_003479980.1| - 2.2e-30 104.5 0.0 2.9e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) CPBP PF02517.16 gi|289581515|ref|YP_003479981.1| - 2.4e-17 63.0 5.6 2.4e-17 63.0 5.6 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF3309 PF11752.8 gi|289581515|ref|YP_003479981.1| - 0.99 9.5 13.6 0.16 12.0 0.8 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3309) DUF2619 PF10942.8 gi|289581516|ref|YP_003479982.1| - 0.094 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2619) PqiA PF04403.13 gi|289581516|ref|YP_003479982.1| - 0.16 11.8 0.5 0.22 11.4 0.5 1.1 1 0 0 1 1 1 0 Paraquat-inducible protein A KCNQC3-Ank-G_bd PF11956.8 gi|289581517|ref|YP_003479983.1| - 0.0032 17.7 0.6 0.0056 16.9 0.6 1.5 1 0 0 1 1 1 1 Ankyrin-G binding motif of KCNQ2-3 Cadherin-like PF12733.7 gi|289581517|ref|YP_003479983.1| - 0.61 10.7 7.3 2.9 8.5 0.3 2.3 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain PEX-1N PF09262.11 gi|289581517|ref|YP_003479983.1| - 5.3 7.5 7.3 15 6.1 0.2 2.6 2 1 1 3 3 3 0 Peroxisome biogenesis factor 1, N-terminal AdoHcyase PF05221.17 gi|289581518|ref|YP_003479984.1| - 1.7e-51 175.2 0.0 9.9e-27 93.8 0.2 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|289581518|ref|YP_003479984.1| - 4e-47 160.3 1.3 7.4e-47 159.4 0.4 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289581518|ref|YP_003479984.1| - 4.5e-10 39.2 0.1 8e-10 38.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|289581518|ref|YP_003479984.1| - 1.8e-06 27.6 1.0 3.7e-06 26.6 0.2 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|289581518|ref|YP_003479984.1| - 0.011 15.9 0.1 0.027 14.7 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|289581518|ref|YP_003479984.1| - 0.019 15.0 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|289581518|ref|YP_003479984.1| - 0.096 12.6 1.2 0.16 11.8 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Urocanase PF01175.18 gi|289581518|ref|YP_003479984.1| - 0.19 11.4 1.6 0.28 10.8 0.6 1.8 2 0 0 2 2 2 0 Urocanase Rossmann-like domain Amidohydro_1 PF01979.20 gi|289581520|ref|YP_003479986.1| - 8.5e-64 216.0 5.3 1e-63 215.8 5.3 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|289581520|ref|YP_003479986.1| - 3.6e-20 72.9 12.7 3.2e-16 59.9 8.2 2.3 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|289581520|ref|YP_003479986.1| - 2.5e-05 23.8 0.1 6.1e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Adenosine/AMP deaminase Replic_Relax PF13814.6 gi|289581520|ref|YP_003479986.1| - 0.024 14.7 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 Replication-relaxation Methyltransf_21 PF05050.12 gi|289581521|ref|YP_003479987.1| - 6e-17 62.2 0.0 7.7e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|289581521|ref|YP_003479987.1| - 4.4e-05 23.3 0.0 6.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|289581521|ref|YP_003479987.1| - 0.0023 17.3 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein MTS PF05175.14 gi|289581521|ref|YP_003479987.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|289581521|ref|YP_003479987.1| - 0.07 13.8 0.0 0.17 12.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Acetyltransf_8 PF13523.6 gi|289581521|ref|YP_003479987.1| - 0.094 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain APH PF01636.23 gi|289581522|ref|YP_003479988.1| - 1.9e-16 60.7 7.0 1.9e-16 60.7 7.0 1.5 1 1 1 2 2 2 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|289581522|ref|YP_003479988.1| - 0.015 14.5 0.4 0.41 9.8 0.2 2.7 2 2 0 2 2 2 0 Fructosamine kinase DUF1679 PF07914.11 gi|289581522|ref|YP_003479988.1| - 0.048 12.5 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) SpoIIM PF01944.17 gi|289581523|ref|YP_003479989.1| - 8.5e-26 90.8 20.1 8.5e-26 90.8 20.1 2.2 1 1 0 2 2 2 1 Stage II sporulation protein M Pex14_N PF04695.13 gi|289581523|ref|YP_003479989.1| - 0.073 13.7 0.0 0.18 12.5 0.0 1.7 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region CSD PF00313.22 gi|289581524|ref|YP_003479990.1| - 7e-19 67.4 0.1 7.7e-19 67.3 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|289581524|ref|YP_003479990.1| - 0.041 13.6 2.7 0.059 13.1 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|289581524|ref|YP_003479990.1| - 0.084 12.8 0.3 0.11 12.4 0.3 1.4 1 1 0 1 1 1 0 S1-like E1-E2_ATPase PF00122.20 gi|289581525|ref|YP_003479991.1| - 8.1e-47 159.1 7.0 1.1e-46 158.7 4.3 2.6 3 1 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|289581525|ref|YP_003479991.1| - 1.5e-46 159.4 7.6 3.7e-46 158.1 7.6 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|289581525|ref|YP_003479991.1| - 8.4e-29 99.8 0.1 3.9e-13 49.6 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|289581525|ref|YP_003479991.1| - 1.1e-06 28.6 1.1 0.00017 21.4 0.5 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289581525|ref|YP_003479991.1| - 1e-05 26.0 0.2 4.1e-05 24.1 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|289581525|ref|YP_003479991.1| - 0.0018 18.4 0.4 0.011 15.9 0.0 2.5 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Fer2_BFD PF04324.15 gi|289581525|ref|YP_003479991.1| - 0.27 11.6 2.7 6.6 7.2 0.1 3.1 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain HisG PF01634.18 gi|289581526|ref|YP_003479992.1| - 4.4e-50 169.8 0.7 6.4e-50 169.2 0.7 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|289581526|ref|YP_003479992.1| - 1.5e-25 89.1 0.3 5.9e-25 87.2 0.1 2.2 2 0 0 2 2 2 1 HisG, C-terminal domain NMT1 PF09084.11 gi|289581526|ref|YP_003479992.1| - 7.3e-06 26.1 0.1 4e-05 23.7 0.0 2.0 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|289581526|ref|YP_003479992.1| - 0.00044 19.9 0.2 0.0027 17.3 0.0 2.2 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|289581526|ref|YP_003479992.1| - 0.0058 16.0 0.3 0.0087 15.4 0.3 1.4 1 0 0 1 1 1 1 LysR substrate binding domain PRC PF05239.16 gi|289581527|ref|YP_003479993.1| - 1.9e-06 27.9 0.0 1.9e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain Peptidase_M48 PF01435.18 gi|289581528|ref|YP_003479994.1| - 8.3e-23 81.2 0.0 1.6e-22 80.3 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289581528|ref|YP_003479994.1| - 0.0077 15.5 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|289581528|ref|YP_003479994.1| - 0.14 12.4 0.1 0.14 12.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) BSP PF04450.12 gi|289581528|ref|YP_003479994.1| - 0.19 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF202 PF02656.15 gi|289581529|ref|YP_003479995.1| - 0.11 13.0 0.8 0.12 12.9 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) TatC PF00902.18 gi|289581529|ref|YP_003479995.1| - 0.15 11.8 0.3 0.15 11.8 0.3 1.8 1 1 1 2 2 2 0 Sec-independent protein translocase protein (TatC) Usp PF00582.26 gi|289581530|ref|YP_003479996.1| - 3.3e-31 108.7 0.1 3.8e-31 108.5 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Ion_trans_2 PF07885.16 gi|289581531|ref|YP_003479997.1| - 2.2e-05 24.3 7.8 2.2e-05 24.3 7.8 1.9 2 0 0 2 2 2 1 Ion channel Cation_ATPase_C PF00689.21 gi|289581531|ref|YP_003479997.1| - 0.12 12.1 0.1 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus TBP PF00352.21 gi|289581532|ref|YP_003479998.1| - 4.8e-58 193.1 0.0 5.1e-28 96.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|289581532|ref|YP_003479998.1| - 1.2e-05 25.5 0.0 0.01 16.1 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|289581532|ref|YP_003479998.1| - 0.00025 21.1 0.0 0.69 10.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|289581532|ref|YP_003479998.1| - 0.11 13.2 0.0 12 6.8 0.0 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein UPF0020 PF01170.18 gi|289581533|ref|YP_003479999.1| - 5.9e-22 78.3 0.1 6.8e-21 74.9 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|289581533|ref|YP_003479999.1| - 5.5e-05 23.8 0.1 0.00017 22.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain AviRa PF11599.8 gi|289581533|ref|YP_003479999.1| - 0.00017 21.1 0.0 0.065 12.7 0.0 2.2 2 0 0 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_11 PF08241.12 gi|289581533|ref|YP_003479999.1| - 0.00025 21.6 0.0 0.0007 20.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|289581533|ref|YP_003479999.1| - 0.0043 17.2 0.0 0.008 16.3 0.0 1.3 1 0 0 1 1 1 1 THUMP domain N6_Mtase PF02384.16 gi|289581533|ref|YP_003479999.1| - 0.042 13.1 0.0 0.055 12.7 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_23 PF13489.6 gi|289581533|ref|YP_003479999.1| - 0.054 13.3 0.0 0.19 11.6 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|289581533|ref|YP_003479999.1| - 0.21 11.2 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF3938 PF13074.6 gi|289581534|ref|YP_003480000.1| - 0.12 12.6 0.7 0.19 12.0 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) 4HBT PF03061.22 gi|289581535|ref|YP_003480001.1| - 6.8e-19 68.0 0.1 1e-18 67.4 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 7TMR-DISM_7TM PF07695.11 gi|289581536|ref|YP_003480002.1| - 0.075 12.9 8.1 0.098 12.5 8.1 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF998 PF06197.13 gi|289581536|ref|YP_003480002.1| - 0.11 12.1 20.4 0.19 11.3 6.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF2207 PF09972.9 gi|289581536|ref|YP_003480002.1| - 0.55 8.9 1.8 0.52 9.0 1.2 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Cyt_c_ox_IV PF12270.8 gi|289581536|ref|YP_003480002.1| - 0.59 10.3 3.4 5 7.3 0.1 2.8 1 1 2 3 3 3 0 Cytochrome c oxidase subunit IV Herpes_LMP2 PF07415.11 gi|289581536|ref|YP_003480002.1| - 0.63 8.8 11.1 0.77 8.5 11.1 1.2 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein Yip1 PF04893.17 gi|289581536|ref|YP_003480002.1| - 1.1 8.9 17.8 0.14 11.8 1.2 2.5 1 1 1 2 2 2 0 Yip1 domain DUF1772 PF08592.11 gi|289581536|ref|YP_003480002.1| - 4.8 7.5 11.4 7.9 6.8 7.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) AAA PF00004.29 gi|289581537|ref|YP_003480003.1| - 1.1e-13 51.8 0.0 4.8e-13 49.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|289581537|ref|YP_003480003.1| - 7.2e-13 48.6 0.0 1.4e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|289581537|ref|YP_003480003.1| - 3.1e-11 43.5 0.6 7.8e-11 42.2 0.2 1.8 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA_22 PF13401.6 gi|289581537|ref|YP_003480003.1| - 2.2e-08 34.4 0.0 5.4e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289581537|ref|YP_003480003.1| - 1e-06 29.2 0.3 2.9e-05 24.5 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|289581537|ref|YP_003480003.1| - 4.8e-06 26.4 0.0 0.00047 19.9 0.0 2.9 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|289581537|ref|YP_003480003.1| - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|289581537|ref|YP_003480003.1| - 1.7e-05 25.3 0.0 6.7e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|289581537|ref|YP_003480003.1| - 9.8e-05 22.7 0.1 0.002 18.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|289581537|ref|YP_003480003.1| - 0.0001 22.3 1.0 0.0018 18.3 0.3 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|289581537|ref|YP_003480003.1| - 0.00011 22.2 0.0 0.0003 20.7 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|289581537|ref|YP_003480003.1| - 0.00048 20.0 0.0 0.0015 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|289581537|ref|YP_003480003.1| - 0.00088 18.6 0.0 0.0029 16.9 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.6 gi|289581537|ref|YP_003480003.1| - 0.001 19.1 0.0 0.0029 17.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|289581537|ref|YP_003480003.1| - 0.0017 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|289581537|ref|YP_003480003.1| - 0.0018 17.4 0.0 0.0057 15.8 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|289581537|ref|YP_003480003.1| - 0.0025 17.9 0.0 0.015 15.4 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|289581537|ref|YP_003480003.1| - 0.0045 16.8 0.0 0.022 14.5 0.0 2.2 3 0 0 3 3 3 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|289581537|ref|YP_003480003.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|289581537|ref|YP_003480003.1| - 0.018 14.8 0.0 0.037 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|289581537|ref|YP_003480003.1| - 0.023 14.9 0.0 0.048 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|289581537|ref|YP_003480003.1| - 0.025 14.7 0.0 0.062 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|289581537|ref|YP_003480003.1| - 0.04 13.7 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|289581537|ref|YP_003480003.1| - 0.048 12.9 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain DEAD PF00270.29 gi|289581537|ref|YP_003480003.1| - 0.089 12.6 0.1 5.1 6.8 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase Terminase_6 PF03237.15 gi|289581537|ref|YP_003480003.1| - 0.12 12.0 0.1 0.42 10.2 0.1 1.8 1 1 0 1 1 1 0 Terminase-like family DNA_pol3_delta PF06144.13 gi|289581537|ref|YP_003480003.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Lipoprotein_16 PF03923.13 gi|289581537|ref|YP_003480003.1| - 0.13 11.9 0.0 8.1 6.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized lipoprotein DUF2075 PF09848.9 gi|289581537|ref|YP_003480003.1| - 0.13 11.4 0.0 0.96 8.6 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|289581537|ref|YP_003480003.1| - 0.14 11.6 0.0 0.48 9.9 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|289581537|ref|YP_003480003.1| - 0.17 12.3 0.0 0.48 10.8 0.0 1.8 2 0 0 2 2 1 0 RNA helicase TPR_19 PF14559.6 gi|289581537|ref|YP_003480003.1| - 0.6 10.7 6.0 9 6.9 0.0 4.1 5 1 1 6 6 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|289581537|ref|YP_003480003.1| - 0.69 10.9 8.2 54 5.0 0.1 4.5 5 0 0 5 5 3 0 Tetratricopeptide repeat CARDB PF07705.11 gi|289581538|ref|YP_003480004.1| - 6.8e-06 26.3 0.3 0.00011 22.4 0.0 2.6 2 1 0 2 2 2 1 CARDB Fn3-like PF14310.6 gi|289581538|ref|YP_003480004.1| - 0.00063 19.8 0.6 0.16 12.1 0.0 3.1 3 0 0 3 3 3 2 Fibronectin type III-like domain EutN_CcmL PF03319.13 gi|289581538|ref|YP_003480004.1| - 0.036 14.6 0.2 0.68 10.5 0.1 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutN/carboxysome Lactamase_B_2 PF12706.7 gi|289581539|ref|YP_003480005.1| - 1.6e-20 73.5 2.0 6.7e-18 64.9 2.0 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289581539|ref|YP_003480005.1| - 3.9e-11 43.3 7.1 1.1e-09 38.6 3.3 2.2 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|289581539|ref|YP_003480005.1| - 0.025 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease DUF460 PF04312.13 gi|289581540|ref|YP_003480006.1| - 3e-50 169.6 0.9 1.6e-49 167.2 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|289581540|ref|YP_003480006.1| - 0.00014 22.1 3.2 0.00014 22.1 3.2 4.3 3 1 1 4 4 2 1 Actinobacteria/chloroflexi VLRF1 release factor PspA_IM30 PF04012.12 gi|289581540|ref|YP_003480006.1| - 0.00077 19.1 8.3 0.0018 17.9 8.3 1.7 1 0 0 1 1 1 1 PspA/IM30 family FlaC_arch PF05377.11 gi|289581540|ref|YP_003480006.1| - 0.0016 18.8 4.4 0.1 13.0 1.0 2.8 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF2968 PF11180.8 gi|289581540|ref|YP_003480006.1| - 0.0016 18.1 11.9 0.0047 16.6 11.9 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) Exonuc_VII_L PF02601.15 gi|289581540|ref|YP_003480006.1| - 0.0057 16.3 2.5 0.01 15.4 2.5 1.4 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF4094 PF13334.6 gi|289581540|ref|YP_003480006.1| - 0.03 14.7 0.8 0.03 14.7 0.8 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4094) DUF812 PF05667.11 gi|289581540|ref|YP_003480006.1| - 0.035 13.0 8.0 0.068 12.1 8.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF812) YPEB PF14620.6 gi|289581540|ref|YP_003480006.1| - 0.088 12.1 3.6 0.16 11.3 3.6 1.3 1 0 0 1 1 1 0 YpeB sporulation DUF724 PF05266.14 gi|289581540|ref|YP_003480006.1| - 0.091 12.6 7.8 0.23 11.3 7.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF724) MAD PF05557.13 gi|289581540|ref|YP_003480006.1| - 0.091 11.1 21.3 0.0051 15.2 16.0 1.5 2 0 0 2 2 2 0 Mitotic checkpoint protein HOOK PF05622.12 gi|289581540|ref|YP_003480006.1| - 0.094 10.8 17.4 0.39 8.8 17.1 1.8 1 1 1 2 2 2 0 HOOK protein BLOC1_2 PF10046.9 gi|289581540|ref|YP_003480006.1| - 0.1 12.9 4.0 0.24 11.7 1.0 2.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BtrH_N PF14399.6 gi|289581540|ref|YP_003480006.1| - 0.11 12.8 0.0 12 6.2 0.0 3.2 3 0 0 3 3 3 0 Butirosin biosynthesis protein H, N-terminal Herpes_UL6 PF01763.16 gi|289581540|ref|YP_003480006.1| - 0.17 10.4 2.2 0.24 9.8 2.2 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF1664 PF07889.12 gi|289581540|ref|YP_003480006.1| - 0.22 11.5 7.3 2.1 8.4 2.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Vac_Fusion PF02346.16 gi|289581540|ref|YP_003480006.1| - 0.37 10.4 4.5 0.58 9.8 3.1 2.0 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 Atg14 PF10186.9 gi|289581540|ref|YP_003480006.1| - 0.37 9.8 12.6 0.62 9.1 12.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FAM76 PF16046.5 gi|289581540|ref|YP_003480006.1| - 0.38 10.1 3.7 0.61 9.4 3.7 1.3 1 0 0 1 1 1 0 FAM76 protein SlyX PF04102.12 gi|289581540|ref|YP_003480006.1| - 0.4 11.3 13.8 3.1 8.5 7.3 2.9 1 1 1 2 2 2 0 SlyX HMMR_N PF15905.5 gi|289581540|ref|YP_003480006.1| - 0.47 9.9 13.1 0.86 9.0 13.1 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal V_ATPase_I PF01496.19 gi|289581540|ref|YP_003480006.1| - 0.7 7.7 5.6 1.2 7.0 5.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF5082 PF16888.5 gi|289581540|ref|YP_003480006.1| - 0.92 9.8 11.2 0.8 10.0 2.1 2.8 2 1 1 3 3 2 0 Domain of unknown function (DUF5082) XhlA PF10779.9 gi|289581540|ref|YP_003480006.1| - 1 9.6 12.4 5.9 7.2 3.7 3.2 1 1 1 2 2 2 0 Haemolysin XhlA FlxA PF14282.6 gi|289581540|ref|YP_003480006.1| - 1 9.4 4.0 6 6.9 0.4 2.3 1 1 1 2 2 2 0 FlxA-like protein DUF16 PF01519.16 gi|289581540|ref|YP_003480006.1| - 1.2 9.7 6.7 4.5 7.8 6.1 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|289581540|ref|YP_003480006.1| - 1.2 8.3 2.9 2.4 7.3 2.9 1.5 1 0 0 1 1 1 0 TMPIT-like protein Occludin_ELL PF07303.13 gi|289581540|ref|YP_003480006.1| - 1.5 9.6 7.8 11 6.9 7.8 2.4 1 1 0 1 1 1 0 Occludin homology domain Spc7 PF08317.11 gi|289581540|ref|YP_003480006.1| - 1.9 7.3 14.9 0.77 8.6 10.9 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein Spc29 PF17082.5 gi|289581540|ref|YP_003480006.1| - 2 8.2 11.6 8.6 6.1 5.7 2.4 1 1 1 2 2 2 0 Spindle Pole Component 29 FlaG PF03646.15 gi|289581540|ref|YP_003480006.1| - 2.1 8.6 5.9 3.7 7.8 1.2 2.7 2 0 0 2 2 2 0 FlaG protein TMCO5 PF14992.6 gi|289581540|ref|YP_003480006.1| - 2.5 7.6 12.3 5.2 6.6 12.3 1.5 1 0 0 1 1 1 0 TMCO5 family Ax_dynein_light PF10211.9 gi|289581540|ref|YP_003480006.1| - 2.6 8.0 14.4 1.4 8.8 10.6 2.3 1 1 1 2 2 2 0 Axonemal dynein light chain DUF2730 PF10805.8 gi|289581540|ref|YP_003480006.1| - 4.6 7.4 5.5 3 8.0 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF641 PF04859.12 gi|289581540|ref|YP_003480006.1| - 5.9 7.2 12.9 1.1 9.6 5.1 3.1 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) TRAF_BIRC3_bd PF16673.5 gi|289581540|ref|YP_003480006.1| - 6 6.7 16.9 0.95 9.3 4.1 3.3 1 1 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain HSBP1 PF06825.12 gi|289581540|ref|YP_003480006.1| - 7.6 6.5 9.6 4.7 7.2 2.1 3.3 2 1 1 3 3 3 0 Heat shock factor binding protein 1 DUF1700 PF08006.11 gi|289581541|ref|YP_003480007.1| - 1 8.8 5.7 1 8.8 5.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF4225 PF13988.6 gi|289581541|ref|YP_003480007.1| - 3.8 7.1 7.2 4.7 6.7 6.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4225) eIF-1a PF01176.19 gi|289581542|ref|YP_003480008.1| - 5.3e-25 87.0 0.3 6.6e-25 86.7 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Myosin_N PF02736.19 gi|289581542|ref|YP_003480008.1| - 0.016 15.0 1.0 0.043 13.6 0.1 2.1 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain ChapFlgA_N PF17656.1 gi|289581542|ref|YP_003480008.1| - 0.086 13.0 0.0 0.15 12.2 0.0 1.4 2 0 0 2 2 2 0 FlgA N-terminal domain Peptidase_S8 PF00082.22 gi|289581543|ref|YP_003480009.1| - 7.2e-44 150.2 10.3 1e-43 149.7 10.3 1.3 1 0 0 1 1 1 1 Subtilase family TrbI PF03743.14 gi|289581543|ref|YP_003480009.1| - 0.0038 17.1 1.8 2.5 7.9 0.0 2.7 2 1 0 2 2 2 2 Bacterial conjugation TrbI-like protein Serglycin PF04360.12 gi|289581543|ref|YP_003480009.1| - 0.11 12.4 0.7 0.27 11.2 0.7 1.6 1 0 0 1 1 1 0 Serglycin FAD-SLDH PF12318.8 gi|289581543|ref|YP_003480009.1| - 0.29 11.2 0.5 0.81 9.7 0.3 1.8 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Wzz PF02706.15 gi|289581544|ref|YP_003480010.1| - 0.11 12.8 0.5 0.14 12.4 0.5 1.2 1 0 0 1 1 1 0 Chain length determinant protein Phage_holin_3_6 PF07332.11 gi|289581544|ref|YP_003480010.1| - 0.22 11.6 5.7 0.26 11.3 5.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Aminotran_5 PF00266.19 gi|289581545|ref|YP_003480011.1| - 1.6e-30 106.3 0.0 2.1e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V TipAS PF07739.13 gi|289581545|ref|YP_003480011.1| - 0.12 12.9 1.1 2.5 8.7 0.6 2.9 2 1 1 3 3 3 0 TipAS antibiotic-recognition domain EamA PF00892.20 gi|289581546|ref|YP_003480012.1| - 1.5e-36 125.6 41.8 2.3e-19 69.9 20.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|289581546|ref|YP_003480012.1| - 0.15 12.1 8.3 0.074 13.1 1.0 2.6 3 0 0 3 3 3 0 Putative transmembrane family 234 TAT_signal PF10518.9 gi|289581547|ref|YP_003480013.1| - 1.4e-05 24.7 3.9 2.5e-05 23.9 3.9 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|289581547|ref|YP_003480013.1| - 0.00013 22.4 0.4 0.00025 21.4 0.3 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Imm5 PF14423.6 gi|289581547|ref|YP_003480013.1| - 0.11 12.7 3.0 0.27 11.4 0.5 2.0 2 0 0 2 2 2 0 Immunity protein Imm5 MFS_1 PF07690.16 gi|289581548|ref|YP_003480014.1| - 2.7e-35 122.0 51.9 1.3e-23 83.5 24.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|289581548|ref|YP_003480014.1| - 0.81 8.5 14.7 6.4 5.5 14.7 2.5 1 1 0 1 1 1 0 MFS_1 like family EpsG PF14897.6 gi|289581550|ref|YP_003480016.1| - 0.012 14.9 4.1 0.014 14.7 4.1 1.1 1 0 0 1 1 1 0 EpsG family Cys_Met_Meta_PP PF01053.20 gi|289581551|ref|YP_003480017.1| - 3.8e-131 437.1 0.0 4.3e-131 437.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|289581551|ref|YP_003480017.1| - 3.9e-09 36.1 0.0 7e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|289581551|ref|YP_003480017.1| - 6.8e-07 28.9 0.2 1.2e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|289581551|ref|YP_003480017.1| - 0.0002 20.5 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|289581551|ref|YP_003480017.1| - 0.0082 15.5 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Abhydrolase_1 PF00561.20 gi|289581552|ref|YP_003480018.1| - 3.5e-31 108.8 0.1 4.2e-31 108.5 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289581552|ref|YP_003480018.1| - 0.0042 16.4 0.0 0.0066 15.7 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|289581552|ref|YP_003480018.1| - 0.15 11.5 0.7 4.7 6.6 0.0 2.6 2 1 0 2 2 2 0 Prolyl oligopeptidase family OrfB_Zn_ribbon PF07282.11 gi|289581554|ref|YP_003480020.1| - 1.4e-23 82.6 0.5 3.4e-23 81.3 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289581554|ref|YP_003480020.1| - 0.025 14.8 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 Probable transposase RuvC_1 PF18516.1 gi|289581554|ref|YP_003480020.1| - 0.11 11.6 0.0 0.83 8.8 0.0 2.1 1 1 0 1 1 1 0 RuvC nuclease domain C1_2 PF03107.16 gi|289581554|ref|YP_003480020.1| - 0.16 12.3 3.3 0.29 11.5 0.2 2.5 3 0 0 3 3 3 0 C1 domain HAD PF12710.7 gi|289581555|ref|YP_003480021.1| - 1.2e-23 84.5 0.3 1.4e-23 84.2 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289581555|ref|YP_003480021.1| - 3.5e-17 63.4 8.6 5e-15 56.4 3.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|289581555|ref|YP_003480021.1| - 1.2e-12 48.1 0.5 1.5e-09 37.9 0.0 3.0 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|289581555|ref|YP_003480021.1| - 6.4e-07 29.6 0.3 0.00014 22.0 0.0 2.9 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|289581555|ref|YP_003480021.1| - 0.013 15.0 0.0 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase UMPH-1 PF05822.12 gi|289581555|ref|YP_003480021.1| - 0.026 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Hydrolase_6 PF13344.6 gi|289581555|ref|YP_003480021.1| - 0.029 14.5 0.0 0.16 12.1 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 gi|289581555|ref|YP_003480021.1| - 0.058 12.8 0.4 1.9 7.9 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) S6PP PF05116.13 gi|289581555|ref|YP_003480021.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase 2-Hacid_dh_C PF02826.19 gi|289581556|ref|YP_003480022.1| - 4.5e-56 189.0 0.0 1.2e-55 187.6 0.0 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|289581556|ref|YP_003480022.1| - 1.1e-35 122.2 0.6 1.8e-35 121.5 0.6 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|289581556|ref|YP_003480022.1| - 2.5e-05 24.0 0.3 0.00013 21.6 0.0 2.5 2 0 0 2 2 2 1 ACT domain IlvN PF07991.12 gi|289581556|ref|YP_003480022.1| - 0.0015 18.2 0.0 0.01 15.4 0.0 2.3 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|289581556|ref|YP_003480022.1| - 0.0038 17.6 0.0 0.016 15.6 0.0 2.0 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.18 gi|289581556|ref|YP_003480022.1| - 0.0041 17.4 0.3 0.02 15.2 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|289581556|ref|YP_003480022.1| - 0.0049 17.1 0.1 0.057 13.6 0.0 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|289581556|ref|YP_003480022.1| - 0.016 15.7 0.0 0.061 13.8 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding PDZ PF00595.24 gi|289581556|ref|YP_003480022.1| - 0.12 12.8 0.2 0.12 12.8 0.2 3.0 3 0 0 3 3 3 0 PDZ domain TAT_signal PF10518.9 gi|289581559|ref|YP_003480025.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Reprolysin_3 PF13582.6 gi|289581561|ref|YP_003480027.1| - 0.069 13.7 1.7 0.19 12.2 1.7 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like PRA-CH PF01502.18 gi|289581562|ref|YP_003480028.1| - 7.4e-35 118.6 0.1 1.2e-34 118.0 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase AAA_13 PF13166.6 gi|289581563|ref|YP_003480029.1| - 0.0038 16.0 4.2 0.44 9.1 0.0 2.5 3 0 0 3 3 3 2 AAA domain Spc7 PF08317.11 gi|289581563|ref|YP_003480029.1| - 0.87 8.4 13.6 0.034 13.0 0.5 3.2 2 2 0 3 3 3 0 Spc7 kinetochore protein Sipho_Gp157 PF05565.11 gi|289581563|ref|YP_003480029.1| - 0.93 9.5 7.5 1.2 9.1 1.7 2.7 2 0 0 2 2 2 0 Siphovirus Gp157 TPR_MLP1_2 PF07926.12 gi|289581563|ref|YP_003480029.1| - 3.1 7.9 13.7 0.21 11.7 1.2 3.6 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein Polysacc_deac_1 PF01522.21 gi|289581566|ref|YP_003480032.1| - 1.4e-11 44.3 0.0 2.6e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase TAT_signal PF10518.9 gi|289581566|ref|YP_003480032.1| - 0.028 14.3 2.1 0.046 13.6 2.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Hexapep PF00132.24 gi|289581567|ref|YP_003480033.1| - 7e-16 57.3 7.8 5.3e-10 38.6 3.2 3.6 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289581567|ref|YP_003480033.1| - 1.3e-07 31.2 3.6 1.3e-07 31.2 3.6 2.2 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase AMP-binding PF00501.28 gi|289581571|ref|YP_003480037.1| - 1.2e-29 103.2 0.0 5.4e-14 51.6 0.0 2.3 2 0 0 2 2 2 2 AMP-binding enzyme Abhydrolase_1 PF00561.20 gi|289581572|ref|YP_003480038.1| - 9.5e-15 54.9 0.1 9.6e-13 48.4 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289581572|ref|YP_003480038.1| - 4e-14 53.8 11.9 4.8e-14 53.5 11.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|289581572|ref|YP_003480038.1| - 6e-10 38.8 0.0 2e-09 37.1 0.0 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF3368 PF11848.8 gi|289581573|ref|YP_003480039.1| - 1.4e-13 50.4 0.0 9.9e-13 47.7 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) DAPDH_C PF16654.5 gi|289581573|ref|YP_003480039.1| - 0.078 12.8 0.0 0.099 12.5 0.0 1.2 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain UPF0175 PF03683.13 gi|289581574|ref|YP_003480040.1| - 9.8e-11 41.2 1.5 1.7e-10 40.4 1.5 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) T3SS_ExsE PF18286.1 gi|289581574|ref|YP_003480040.1| - 0.017 15.0 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 Type III secretion system ExsE GYF_2 PF14237.6 gi|289581574|ref|YP_003480040.1| - 0.023 14.5 0.8 1.9 8.4 0.1 2.4 1 1 1 2 2 2 0 GYF domain 2 FoP_duplication PF13865.6 gi|289581574|ref|YP_003480040.1| - 0.21 12.2 1.9 7.1 7.3 0.1 2.2 2 0 0 2 2 2 0 C-terminal duplication domain of Friend of PRMT1 tRNA-synt_2c PF01411.19 gi|289581575|ref|YP_003480041.1| - 2.3e-120 402.7 0.1 2.8e-120 402.4 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|289581575|ref|YP_003480041.1| - 4e-18 66.1 0.6 7.8e-18 65.2 0.6 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|289581575|ref|YP_003480041.1| - 1.8e-12 47.1 1.1 3.7e-12 46.1 1.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Reductase_C PF14759.6 gi|289581575|ref|YP_003480041.1| - 0.29 11.7 4.0 36 5.0 0.2 4.0 4 0 0 4 4 4 0 Reductase C-terminal PAS PF00989.25 gi|289581576|ref|YP_003480042.1| - 6.5e-06 26.1 0.0 1.9e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|289581576|ref|YP_003480042.1| - 5.2e-05 23.6 0.1 5.2e-05 23.6 0.1 3.6 4 0 0 4 4 4 1 GAF domain HisKA PF00512.25 gi|289581576|ref|YP_003480042.1| - 0.00074 19.5 1.1 0.0028 17.6 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|289581576|ref|YP_003480042.1| - 0.00078 19.7 3.5 0.0008 19.6 0.2 2.8 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|289581576|ref|YP_003480042.1| - 0.0033 18.1 0.1 0.018 15.7 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|289581576|ref|YP_003480042.1| - 0.0062 16.5 0.0 0.018 15.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|289581576|ref|YP_003480042.1| - 0.022 15.0 0.0 0.052 13.8 0.0 1.7 1 0 0 1 1 1 0 PAS domain Rep_fac_C PF08542.11 gi|289581577|ref|YP_003480043.1| - 7.5e-24 84.0 0.0 2e-23 82.6 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|289581577|ref|YP_003480043.1| - 6.3e-20 71.9 0.1 1.2e-17 64.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|289581577|ref|YP_003480043.1| - 4.5e-15 55.8 0.0 6.9e-11 42.2 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|289581577|ref|YP_003480043.1| - 8.6e-07 29.2 1.0 2.6e-06 27.7 0.6 2.1 2 0 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|289581577|ref|YP_003480043.1| - 1.3e-06 28.5 0.1 1.5e-05 25.1 0.0 2.2 1 1 1 2 2 2 1 AAA domain Rad17 PF03215.15 gi|289581577|ref|YP_003480043.1| - 1.3e-06 28.4 0.0 2.8e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|289581577|ref|YP_003480043.1| - 2.9e-06 27.8 1.1 0.0061 17.0 0.0 2.9 2 2 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|289581577|ref|YP_003480043.1| - 2.9e-06 27.1 0.1 3.9e-05 23.4 0.0 2.5 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|289581577|ref|YP_003480043.1| - 3e-05 24.3 0.1 0.38 11.0 0.0 2.6 1 1 1 2 2 2 2 AAA domain DNA_pol3_delta PF06144.13 gi|289581577|ref|YP_003480043.1| - 3.1e-05 23.8 0.0 5.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activat PF00158.26 gi|289581577|ref|YP_003480043.1| - 0.00032 20.4 0.0 0.018 14.8 0.0 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|289581577|ref|YP_003480043.1| - 0.00057 19.8 0.0 0.0038 17.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|289581577|ref|YP_003480043.1| - 0.00076 20.0 0.0 0.0025 18.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|289581577|ref|YP_003480043.1| - 0.00099 18.7 0.0 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|289581577|ref|YP_003480043.1| - 0.0012 18.3 0.0 0.22 10.9 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|289581577|ref|YP_003480043.1| - 0.002 18.1 0.0 0.038 14.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|289581577|ref|YP_003480043.1| - 0.0034 17.4 0.0 0.021 14.9 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 gi|289581577|ref|YP_003480043.1| - 0.0048 16.7 0.0 0.0099 15.6 0.0 1.5 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|289581577|ref|YP_003480043.1| - 0.0062 16.0 0.0 0.18 11.2 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.17 gi|289581577|ref|YP_003480043.1| - 0.0068 16.2 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|289581577|ref|YP_003480043.1| - 0.0068 16.1 1.0 0.017 14.9 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|289581577|ref|YP_003480043.1| - 0.016 15.4 0.0 0.054 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.22 gi|289581577|ref|YP_003480043.1| - 0.019 15.4 0.0 0.056 13.8 0.0 2.0 1 1 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|289581577|ref|YP_003480043.1| - 0.019 14.9 0.0 0.21 11.5 0.0 2.4 2 1 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|289581577|ref|YP_003480043.1| - 0.023 14.3 0.4 0.069 12.7 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289581577|ref|YP_003480043.1| - 0.026 14.7 0.3 0.085 13.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|289581577|ref|YP_003480043.1| - 0.026 13.7 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain CinA_KH PF18146.1 gi|289581577|ref|YP_003480043.1| - 0.046 13.9 1.0 3.2 8.0 0.0 3.3 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain T2SSE PF00437.20 gi|289581577|ref|YP_003480043.1| - 0.048 12.7 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.29 gi|289581577|ref|YP_003480043.1| - 0.049 13.4 1.4 9 6.0 0.0 3.0 2 1 1 3 3 3 0 DEAD/DEAH box helicase Sigma54_activ_2 PF14532.6 gi|289581577|ref|YP_003480043.1| - 0.056 13.6 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain TetR_C_12 PF16914.5 gi|289581577|ref|YP_003480043.1| - 0.057 13.5 0.6 0.14 12.3 0.1 1.9 2 0 0 2 2 1 0 Bacterial transcriptional repressor C-terminal AAA_24 PF13479.6 gi|289581577|ref|YP_003480043.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sun2_CC2 PF18580.1 gi|289581577|ref|YP_003480043.1| - 0.13 12.5 1.0 0.48 10.7 1.0 2.0 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 NB-ARC PF00931.22 gi|289581577|ref|YP_003480043.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 gi|289581577|ref|YP_003480043.1| - 1.1 9.5 5.3 0.67 10.2 0.2 2.9 2 2 1 3 3 3 0 AAA domain TPR_14 PF13428.6 gi|289581577|ref|YP_003480043.1| - 1.8 9.6 5.3 28 5.9 0.1 3.7 4 1 0 4 4 2 0 Tetratricopeptide repeat Bactofilin PF04519.13 gi|289581578|ref|YP_003480044.1| - 3.4e-10 40.1 28.0 1e-06 28.9 8.5 2.4 1 1 1 2 2 2 2 Polymer-forming cytoskeletal DUF4131 PF13567.6 gi|289581578|ref|YP_003480044.1| - 0.6 9.7 0.0 0.6 9.7 0.0 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) FapA PF03961.13 gi|289581578|ref|YP_003480044.1| - 6.3 5.3 17.7 4.1 5.9 6.2 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A OrfB_Zn_ribbon PF07282.11 gi|289581579|ref|YP_003480045.1| - 7.4e-13 48.2 0.5 1.7e-12 47.0 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289581579|ref|YP_003480045.1| - 0.00023 21.4 0.7 0.00023 21.4 0.7 2.1 2 0 0 2 2 2 1 Probable transposase Ogr_Delta PF04606.12 gi|289581579|ref|YP_003480045.1| - 0.071 13.1 3.1 0.2 11.7 3.1 1.8 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Resolvase PF00239.21 gi|289581580|ref|YP_003480046.1| - 7.1e-22 78.1 0.1 1e-21 77.6 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|289581580|ref|YP_003480046.1| - 5.3e-08 32.9 0.0 1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|289581580|ref|YP_003480046.1| - 0.00058 19.6 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|289581580|ref|YP_003480046.1| - 0.0019 18.3 0.0 0.0033 17.5 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|289581580|ref|YP_003480046.1| - 0.0036 17.1 0.0 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|289581580|ref|YP_003480046.1| - 0.0099 16.0 0.0 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|289581580|ref|YP_003480046.1| - 0.017 15.2 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix YdaS_antitoxin PF15943.5 gi|289581580|ref|YP_003480046.1| - 0.018 14.9 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF1323 PF07037.11 gi|289581580|ref|YP_003480046.1| - 0.068 13.6 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) Terminase_5 PF06056.12 gi|289581580|ref|YP_003480046.1| - 0.16 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) PALP PF00291.25 gi|289581582|ref|YP_003480048.1| - 7.4e-87 291.5 6.4 9.8e-87 291.1 6.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|289581582|ref|YP_003480048.1| - 7.6e-05 23.2 0.3 0.00073 20.1 0.1 2.7 3 0 0 3 3 3 1 ACT domain ACT PF01842.25 gi|289581582|ref|YP_003480048.1| - 0.002 17.9 2.3 0.016 15.0 0.2 3.1 2 1 0 2 2 2 1 ACT domain Acetyltransf_7 PF13508.7 gi|289581583|ref|YP_003480049.1| - 4.8e-09 36.5 0.0 8.5e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289581583|ref|YP_003480049.1| - 1.1e-07 32.0 0.0 1.3e-06 28.7 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289581583|ref|YP_003480049.1| - 1.5e-07 31.4 0.3 0.0002 21.3 0.1 2.4 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289581583|ref|YP_003480049.1| - 0.013 15.4 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|289581583|ref|YP_003480049.1| - 0.035 14.2 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|289581583|ref|YP_003480049.1| - 0.16 12.0 0.2 1.3 9.2 0.0 2.4 4 0 0 4 4 4 0 Acetyltransferase (GNAT) domain SHOCT PF09851.9 gi|289581584|ref|YP_003480050.1| - 2.7e-06 26.9 1.1 3.8e-06 26.5 1.1 1.2 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|289581584|ref|YP_003480050.1| - 0.0015 18.5 0.4 0.0022 18.0 0.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.11 gi|289581584|ref|YP_003480050.1| - 0.011 15.8 0.2 0.024 14.7 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) VbhA PF18495.1 gi|289581584|ref|YP_003480050.1| - 0.037 13.9 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Antitoxin VbhA Helicase_C_2 PF13307.6 gi|289581585|ref|YP_003480051.1| - 4.4e-33 114.9 0.0 7.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|289581585|ref|YP_003480051.1| - 9.2e-07 28.6 0.0 5.9e-06 26.0 0.0 2.1 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|289581585|ref|YP_003480051.1| - 0.0014 18.6 0.0 0.042 13.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|289581585|ref|YP_003480051.1| - 0.002 17.6 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DEAD PF00270.29 gi|289581585|ref|YP_003480051.1| - 0.0046 16.8 0.0 2 8.1 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|289581585|ref|YP_003480051.1| - 0.0073 15.6 0.0 0.065 12.5 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) HBB PF06777.11 gi|289581585|ref|YP_003480051.1| - 0.045 13.4 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 Helical and beta-bridge domain AAA_30 PF13604.6 gi|289581585|ref|YP_003480051.1| - 0.068 12.9 0.1 1.3 8.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain Uds1 PF15456.6 gi|289581585|ref|YP_003480051.1| - 0.095 12.9 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 Up-regulated During Septation HEPN_AbiU2 PF18734.1 gi|289581585|ref|YP_003480051.1| - 0.22 11.0 0.1 0.39 10.2 0.1 1.3 1 0 0 1 1 1 0 AbiU2 CPBP PF02517.16 gi|289581587|ref|YP_003480053.1| - 1.3e-10 41.5 10.7 1.3e-10 41.5 10.7 2.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease TRAP-gamma PF07074.12 gi|289581587|ref|YP_003480053.1| - 0.13 11.8 0.2 0.31 10.6 0.2 1.5 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) DUF1684 PF07920.11 gi|289581588|ref|YP_003480054.1| - 1.8e-48 164.4 0.3 1.8e-48 164.4 0.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1684) SecA_PP_bind PF01043.20 gi|289581588|ref|YP_003480054.1| - 0.019 15.6 0.0 0.04 14.6 0.0 1.6 1 1 0 1 1 1 0 SecA preprotein cross-linking domain Methyltransf_11 PF08241.12 gi|289581589|ref|YP_003480055.1| - 1.6e-23 83.2 0.0 2.7e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289581589|ref|YP_003480055.1| - 3.3e-19 69.4 0.0 6.6e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289581589|ref|YP_003480055.1| - 7e-16 58.4 0.0 9.5e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289581589|ref|YP_003480055.1| - 4.1e-13 49.5 0.0 5.8e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289581589|ref|YP_003480055.1| - 7.6e-11 42.6 0.0 1.2e-10 42.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289581589|ref|YP_003480055.1| - 7.1e-10 38.6 0.0 2.3e-09 36.9 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|289581589|ref|YP_003480055.1| - 0.00012 22.1 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289581589|ref|YP_003480055.1| - 0.00018 21.3 0.0 0.00036 20.4 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|289581589|ref|YP_003480055.1| - 0.0002 20.4 0.0 0.00039 19.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|289581589|ref|YP_003480055.1| - 0.00071 19.2 0.0 0.0026 17.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|289581589|ref|YP_003480055.1| - 0.0026 17.1 0.0 0.0042 16.4 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|289581589|ref|YP_003480055.1| - 0.0036 16.9 0.0 0.0057 16.3 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|289581589|ref|YP_003480055.1| - 0.013 14.8 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain N6_N4_Mtase PF01555.18 gi|289581589|ref|YP_003480055.1| - 0.02 14.6 0.0 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_8 PF05148.15 gi|289581589|ref|YP_003480055.1| - 0.072 12.9 0.0 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Fibrillarin PF01269.17 gi|289581589|ref|YP_003480055.1| - 0.082 12.0 0.0 0.16 11.0 0.0 1.4 2 0 0 2 2 2 0 Fibrillarin PrmA PF06325.13 gi|289581589|ref|YP_003480055.1| - 0.17 11.3 0.2 0.33 10.3 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) SBP_bac_6 PF13343.6 gi|289581590|ref|YP_003480056.1| - 1.6e-19 70.3 0.0 2.4e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|289581590|ref|YP_003480056.1| - 7.7e-12 45.6 0.0 1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289581590|ref|YP_003480056.1| - 8.4e-07 29.0 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289581590|ref|YP_003480056.1| - 2.4e-05 24.5 0.1 0.00017 21.7 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289581590|ref|YP_003480056.1| - 2.6 8.0 8.4 5.2 7.1 8.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|289581591|ref|YP_003480057.1| - 4.7e-31 108.0 51.7 1.5e-18 67.2 11.8 4.0 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF4044 PF13253.6 gi|289581591|ref|YP_003480057.1| - 0.5 9.9 4.4 2 8.0 4.4 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) ATPase PF06745.13 gi|289581592|ref|YP_003480058.1| - 0.00011 21.6 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF1727 PF08353.10 gi|289581592|ref|YP_003480058.1| - 0.18 11.7 0.5 0.5 10.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1727) Pup PF05639.11 gi|289581592|ref|YP_003480058.1| - 3.8 8.5 5.6 2.9 8.9 1.5 2.8 2 1 0 2 2 2 0 Pup-like protein DUF2072 PF09845.9 gi|289581594|ref|YP_003480060.1| - 3.9e-30 104.8 9.4 9.1e-16 58.3 1.4 2.9 2 2 0 2 2 2 2 Zn-ribbon containing protein DUF1451 PF07295.11 gi|289581594|ref|YP_003480060.1| - 0.1 12.6 2.0 0.91 9.6 1.6 2.3 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|289581594|ref|YP_003480060.1| - 0.76 9.9 3.1 1.7 8.8 3.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF2073 PF09846.9 gi|289581595|ref|YP_003480061.1| - 5.5e-46 154.8 1.0 6.5e-46 154.5 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|289581596|ref|YP_003480062.1| - 3.7e-15 56.0 0.0 5.2e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|289581596|ref|YP_003480062.1| - 1.6e-11 44.1 0.5 8.8e-05 22.1 0.0 3.3 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|289581596|ref|YP_003480062.1| - 5.4e-08 32.5 0.1 0.00014 21.4 0.1 2.6 2 1 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|289581596|ref|YP_003480062.1| - 8.7e-06 25.3 0.3 6.8e-05 22.4 0.3 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|289581596|ref|YP_003480062.1| - 1.1e-05 25.4 0.1 0.16 11.8 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|289581596|ref|YP_003480062.1| - 5.1e-05 23.2 0.1 0.00013 22.0 0.0 1.6 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain NB-ARC PF00931.22 gi|289581596|ref|YP_003480062.1| - 0.00022 20.5 0.0 0.00038 19.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Septin PF00735.18 gi|289581596|ref|YP_003480062.1| - 0.00051 19.4 0.1 0.00099 18.5 0.0 1.3 1 1 0 1 1 1 1 Septin SRPRB PF09439.10 gi|289581596|ref|YP_003480062.1| - 0.00052 19.5 0.0 0.11 12.0 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|289581596|ref|YP_003480062.1| - 0.00056 19.5 0.1 0.16 11.5 0.0 2.4 2 1 0 2 2 2 1 Ras family AAA_18 PF13238.6 gi|289581596|ref|YP_003480062.1| - 0.0013 19.3 0.0 0.0043 17.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|289581596|ref|YP_003480062.1| - 0.0015 18.3 0.1 0.0031 17.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain Roc PF08477.13 gi|289581596|ref|YP_003480062.1| - 0.0018 18.5 0.0 0.016 15.4 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA PF00004.29 gi|289581596|ref|YP_003480062.1| - 0.0024 18.3 0.2 0.019 15.4 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|289581596|ref|YP_003480062.1| - 0.0043 17.0 0.1 0.019 14.9 0.0 2.0 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|289581596|ref|YP_003480062.1| - 0.005 17.1 0.4 0.014 15.6 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289581596|ref|YP_003480062.1| - 0.0056 17.1 0.0 0.011 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|289581596|ref|YP_003480062.1| - 0.0062 17.1 0.0 0.0094 16.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter RNA_helicase PF00910.22 gi|289581596|ref|YP_003480062.1| - 0.007 16.8 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Dynamin_N PF00350.23 gi|289581596|ref|YP_003480062.1| - 0.012 15.7 0.0 1.2 9.2 0.0 2.4 1 1 1 2 2 2 0 Dynamin family cobW PF02492.19 gi|289581596|ref|YP_003480062.1| - 0.017 14.7 0.2 0.93 9.1 0.2 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.12 gi|289581596|ref|YP_003480062.1| - 0.038 13.7 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|289581596|ref|YP_003480062.1| - 0.046 14.0 0.0 0.093 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|289581596|ref|YP_003480062.1| - 0.052 13.3 0.0 5 6.8 0.0 3.0 2 1 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|289581596|ref|YP_003480062.1| - 0.057 13.0 0.1 0.15 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|289581596|ref|YP_003480062.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|289581596|ref|YP_003480062.1| - 0.071 12.1 0.0 2.6 7.0 0.0 2.7 2 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Gtr1_RagA PF04670.12 gi|289581596|ref|YP_003480062.1| - 0.098 12.0 0.0 0.98 8.7 0.0 2.2 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Parvo_NS1 PF01057.17 gi|289581596|ref|YP_003480062.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TniB PF05621.11 gi|289581596|ref|YP_003480062.1| - 0.14 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein Cdc6_C PF09079.11 gi|289581597|ref|YP_003480063.1| - 3.8e-24 84.5 0.0 9e-24 83.3 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|289581597|ref|YP_003480063.1| - 2.6e-09 37.6 0.1 0.0016 18.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289581597|ref|YP_003480063.1| - 1.7e-08 34.8 0.4 4.7e-06 26.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289581597|ref|YP_003480063.1| - 1.8e-08 35.0 3.1 5.5e-08 33.4 0.6 2.6 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|289581597|ref|YP_003480063.1| - 0.0006 19.3 0.3 0.0039 16.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein RuvB_N PF05496.12 gi|289581597|ref|YP_003480063.1| - 0.0007 19.4 0.1 0.0019 18.0 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|289581597|ref|YP_003480063.1| - 0.001 19.6 0.0 0.0026 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|289581597|ref|YP_003480063.1| - 0.0031 17.3 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|289581597|ref|YP_003480063.1| - 0.0033 16.6 0.0 0.0081 15.4 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|289581597|ref|YP_003480063.1| - 0.0069 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|289581597|ref|YP_003480063.1| - 0.0078 16.1 0.2 0.14 12.0 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_2 PF07724.14 gi|289581597|ref|YP_003480063.1| - 0.01 15.9 0.2 6.6 6.8 0.1 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Rad17 PF03215.15 gi|289581597|ref|YP_003480063.1| - 0.015 15.2 0.0 0.089 12.7 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|289581597|ref|YP_003480063.1| - 0.017 15.6 0.5 0.059 13.9 0.3 2.0 1 1 0 1 1 1 0 ABC transporter AAA_32 PF13654.6 gi|289581597|ref|YP_003480063.1| - 0.021 13.6 0.8 1.1 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|289581597|ref|YP_003480063.1| - 0.047 12.9 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|289581597|ref|YP_003480063.1| - 0.049 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|289581597|ref|YP_003480063.1| - 0.059 13.7 1.6 0.14 12.6 0.2 2.3 2 0 0 2 2 2 0 AAA C-terminal domain KAP_NTPase PF07693.14 gi|289581597|ref|YP_003480063.1| - 0.069 12.4 0.1 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 KAP family P-loop domain DEAD PF00270.29 gi|289581597|ref|YP_003480063.1| - 0.1 12.4 0.5 8.6 6.1 0.0 2.7 3 0 0 3 3 3 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|289581597|ref|YP_003480063.1| - 0.1 13.0 0.1 0.24 11.8 0.1 1.8 1 1 0 1 1 1 0 RNA helicase DNA_pol3_delta2 PF13177.6 gi|289581597|ref|YP_003480063.1| - 0.11 12.3 1.2 0.29 10.9 0.9 2.0 2 1 0 2 2 2 0 DNA polymerase III, delta subunit Osmo_CC PF08946.10 gi|289581597|ref|YP_003480063.1| - 0.23 11.7 2.5 16 5.9 0.2 2.8 2 0 0 2 2 2 0 Osmosensory transporter coiled coil AAA_24 PF13479.6 gi|289581597|ref|YP_003480063.1| - 0.65 9.7 3.0 0.55 9.9 0.6 2.1 2 1 0 2 2 2 0 AAA domain MerR-DNA-bind PF09278.11 gi|289581597|ref|YP_003480063.1| - 4.6 7.8 7.5 1.5 9.4 0.6 3.0 3 0 0 3 3 2 0 MerR, DNA binding SPX PF03105.19 gi|289581597|ref|YP_003480063.1| - 7 6.5 31.5 0.3 11.0 6.0 2.2 2 0 0 2 2 2 0 SPX domain BOFC_N PF08977.10 gi|289581598|ref|YP_003480064.1| - 0.022 14.7 2.7 0.047 13.7 0.1 2.3 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal TAT_signal PF10518.9 gi|289581598|ref|YP_003480064.1| - 0.077 12.9 0.5 0.1 12.5 0.5 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S24 PF00717.23 gi|289581599|ref|YP_003480065.1| - 8.1e-07 28.9 0.2 2.1e-06 27.6 0.2 1.7 1 0 0 1 1 1 1 Peptidase S24-like Zip PF02535.22 gi|289581599|ref|YP_003480065.1| - 0.13 11.5 0.3 0.18 11.0 0.3 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter NPR3 PF03666.13 gi|289581599|ref|YP_003480065.1| - 0.15 10.8 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Trypan_PARP PF05887.11 gi|289581599|ref|YP_003480065.1| - 0.89 9.5 11.3 2.4 8.2 11.3 1.7 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DNA_pol_E_B PF04042.16 gi|289581600|ref|YP_003480066.1| - 1.4e-13 50.7 0.0 2.1e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|289581600|ref|YP_003480066.1| - 3.1e-11 43.8 2.7 8.8e-11 42.3 2.7 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289581600|ref|YP_003480066.1| - 2.1e-09 38.2 0.5 3.7e-09 37.4 0.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AA_kinase PF00696.28 gi|289581602|ref|YP_003480068.1| - 2.5e-47 161.5 1.6 3.9e-47 160.9 1.6 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|289581602|ref|YP_003480068.1| - 5e-13 48.6 0.0 7.3e-06 25.7 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|289581602|ref|YP_003480068.1| - 7.7e-08 32.0 1.2 0.019 14.7 0.1 3.2 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|289581602|ref|YP_003480068.1| - 0.007 16.9 0.0 3.8 8.2 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|289581602|ref|YP_003480068.1| - 0.12 12.4 0.1 19 5.4 0.0 2.7 2 0 0 2 2 2 0 ACT domain Beta_elim_lyase PF01212.21 gi|289581604|ref|YP_003480070.1| - 3.8e-72 243.0 0.2 5.3e-72 242.6 0.2 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|289581604|ref|YP_003480070.1| - 0.024 13.9 0.9 0.11 11.8 0.8 1.8 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peptidase_S15 PF02129.18 gi|289581605|ref|YP_003480071.1| - 7.5e-62 209.3 3.0 1.1e-61 208.8 3.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 gi|289581605|ref|YP_003480071.1| - 1.8e-43 149.1 1.2 3.6e-43 148.1 1.2 1.4 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S9 PF00326.21 gi|289581605|ref|YP_003480071.1| - 4.7e-08 32.8 5.6 6.9e-07 29.0 0.5 2.8 1 1 1 2 2 2 2 Prolyl oligopeptidase family FSH1 PF03959.13 gi|289581605|ref|YP_003480071.1| - 0.0094 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase (FSH1) ATP-synt_Eps PF04627.13 gi|289581606|ref|YP_003480072.1| - 0.09 12.8 1.4 6.3 6.9 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ATP synthase epsilon chain SBP_bac_6 PF13343.6 gi|289581607|ref|YP_003480073.1| - 8e-22 77.8 0.0 1.2e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289581607|ref|YP_003480073.1| - 1.9e-07 31.3 0.0 3.8e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289581607|ref|YP_003480073.1| - 2.5e-05 24.1 0.2 3.7e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Trypan_PARP PF05887.11 gi|289581607|ref|YP_003480073.1| - 0.67 9.9 4.1 1.1 9.2 4.1 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF5518 PF17647.1 gi|289581608|ref|YP_003480074.1| - 5.1e-18 65.3 33.4 6.1e-18 65.1 33.4 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Tetraspanin PF00335.20 gi|289581608|ref|YP_003480074.1| - 0.023 14.4 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family Promethin PF16015.5 gi|289581608|ref|YP_003480074.1| - 6.3 6.8 26.2 0.28 11.1 18.7 2.0 2 0 0 2 2 2 0 Promethin Phage_holin_8 PF16931.5 gi|289581608|ref|YP_003480074.1| - 7.3 6.6 12.0 0.1 12.6 3.5 2.1 2 1 0 2 2 2 0 Putative phage holin Rick_17kDa_Anti PF05433.15 gi|289581608|ref|YP_003480074.1| - 7.6 6.5 15.8 11 5.9 0.0 3.9 3 1 0 3 3 3 0 Glycine zipper 2TM domain MacB_PCD PF12704.7 gi|289581609|ref|YP_003480075.1| - 1.9e-20 74.1 0.7 1.9e-20 74.1 0.7 2.2 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|289581609|ref|YP_003480075.1| - 3.6e-15 56.2 1.1 3.6e-15 56.2 1.1 3.1 3 0 0 3 3 3 1 FtsX-like permease family HRG PF16954.5 gi|289581609|ref|YP_003480075.1| - 0.082 13.3 0.1 0.082 13.3 0.1 2.8 4 0 0 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene DUF4064 PF13273.6 gi|289581609|ref|YP_003480075.1| - 1.2 9.4 14.0 1.9 8.8 2.5 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 gi|289581610|ref|YP_003480076.1| - 4.4e-32 111.5 0.0 6.2e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|289581610|ref|YP_003480076.1| - 6.8e-07 28.9 0.0 0.007 15.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289581610|ref|YP_003480076.1| - 9.3e-06 25.3 0.1 2.6e-05 23.9 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|289581610|ref|YP_003480076.1| - 0.00011 22.2 0.4 0.32 10.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|289581610|ref|YP_003480076.1| - 0.0011 18.8 0.1 0.0032 17.4 0.1 1.9 2 1 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|289581610|ref|YP_003480076.1| - 0.0013 19.2 0.1 0.003 18.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|289581610|ref|YP_003480076.1| - 0.011 15.3 0.2 0.092 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|289581610|ref|YP_003480076.1| - 0.02 15.2 0.4 0.11 12.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|289581610|ref|YP_003480076.1| - 0.02 15.4 0.0 0.033 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289581610|ref|YP_003480076.1| - 0.046 13.5 0.7 0.17 11.6 0.7 1.9 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|289581610|ref|YP_003480076.1| - 0.074 12.1 0.0 0.25 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MMR_HSR1 PF01926.23 gi|289581610|ref|YP_003480076.1| - 0.09 12.9 0.1 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|289581610|ref|YP_003480076.1| - 0.19 11.0 0.1 0.9 8.8 0.0 1.8 2 0 0 2 2 2 0 KaiC Peptidase_S24 PF00717.23 gi|289581611|ref|YP_003480077.1| - 3.5e-06 26.9 0.0 6.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Rib_5-P_isom_A PF06026.14 gi|289581612|ref|YP_003480078.1| - 2.9e-61 206.0 0.0 3.6e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|289581612|ref|YP_003480078.1| - 4.3e-05 23.5 0.1 0.0013 18.7 0.1 2.2 2 0 0 2 2 2 1 DeoR C terminal sensor domain FMN_dh PF01070.18 gi|289581614|ref|YP_003480080.1| - 1.1e-29 103.5 11.5 9.5e-27 93.9 11.5 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|289581614|ref|YP_003480080.1| - 3e-05 23.4 3.3 9.6e-05 21.7 2.5 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|289581614|ref|YP_003480080.1| - 0.0003 19.9 11.8 0.024 13.6 7.2 3.3 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain DUF1931 PF09123.11 gi|289581615|ref|YP_003480081.1| - 2.3e-05 24.5 1.5 2.6e-05 24.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|289581615|ref|YP_003480081.1| - 0.0012 19.1 0.1 0.0018 18.5 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|289581615|ref|YP_003480081.1| - 0.064 13.6 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Glutaredoxin PF00462.24 gi|289581615|ref|YP_003480081.1| - 0.19 12.0 0.4 0.23 11.7 0.4 1.1 1 0 0 1 1 1 0 Glutaredoxin AIRC PF00731.20 gi|289581616|ref|YP_003480082.1| - 6.1e-13 48.6 4.8 1.1e-12 47.7 3.9 1.8 2 0 0 2 2 2 1 AIR carboxylase zf-HC2 PF13490.6 gi|289581616|ref|YP_003480082.1| - 0.12 12.6 0.2 0.4 11.0 0.2 1.9 1 0 0 1 1 1 0 Putative zinc-finger DUF5518 PF17647.1 gi|289581618|ref|YP_003480084.1| - 1.5e-06 28.4 22.5 1.7e-06 28.2 22.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF4051 PF13260.6 gi|289581618|ref|YP_003480084.1| - 6 6.7 9.7 0.83 9.4 0.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4051) GIY-YIG PF01541.24 gi|289581619|ref|YP_003480085.1| - 3.9e-18 65.5 0.3 5.2e-18 65.1 0.3 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|289581619|ref|YP_003480085.1| - 0.04 14.4 0.2 0.055 14.0 0.2 1.2 1 0 0 1 1 1 0 T5orf172 domain SAP25 PF15476.6 gi|289581619|ref|YP_003480085.1| - 1.6 8.3 5.1 2.3 7.9 0.0 2.5 1 1 2 3 3 3 0 Histone deacetylase complex subunit SAP25 Bd3614-deam PF14439.6 gi|289581620|ref|YP_003480086.1| - 0.015 15.3 0.2 0.031 14.3 0.2 1.4 1 0 0 1 1 1 0 Bd3614-like deaminase FMN_red PF03358.15 gi|289581621|ref|YP_003480087.1| - 5.3e-32 110.7 0.0 6.3e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|289581621|ref|YP_003480087.1| - 1.1e-09 38.3 0.0 1.6e-09 37.8 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Usp PF00582.26 gi|289581621|ref|YP_003480087.1| - 0.047 14.2 0.1 0.073 13.6 0.1 1.3 1 0 0 1 1 1 0 Universal stress protein family Flavodoxin_5 PF12724.7 gi|289581621|ref|YP_003480087.1| - 0.061 13.6 0.0 0.14 12.4 0.0 1.6 2 0 0 2 2 2 0 Flavodoxin domain PGM_PMM_I PF02878.16 gi|289581622|ref|YP_003480088.1| - 2.9e-38 130.7 0.0 5.8e-38 129.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|289581622|ref|YP_003480088.1| - 2e-22 79.8 0.2 5.1e-22 78.4 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|289581622|ref|YP_003480088.1| - 2.1e-22 79.5 0.1 3.9e-22 78.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|289581622|ref|YP_003480088.1| - 6.1e-16 58.4 0.1 1.9e-15 56.7 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Hexapep PF00132.24 gi|289581624|ref|YP_003480090.1| - 9.8e-15 53.6 7.4 1.1e-08 34.4 0.4 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289581624|ref|YP_003480090.1| - 2.1e-06 27.4 8.9 3.8e-06 26.5 1.9 3.1 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|289581624|ref|YP_003480090.1| - 0.0005 20.4 0.0 0.00087 19.6 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Whib PF02467.16 gi|289581624|ref|YP_003480090.1| - 0.059 14.0 0.1 0.1 13.2 0.1 1.3 1 0 0 1 1 1 0 Transcription factor WhiB Bactofilin PF04519.13 gi|289581624|ref|YP_003480090.1| - 0.08 13.2 3.7 0.12 12.7 2.8 1.7 1 1 0 1 1 1 0 Polymer-forming cytoskeletal Metallophos_2 PF12850.7 gi|289581625|ref|YP_003480091.1| - 1.2e-30 106.9 0.0 1.5e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289581625|ref|YP_003480091.1| - 4.8e-11 43.5 0.5 4.4e-10 40.4 0.5 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|289581625|ref|YP_003480091.1| - 0.027 13.8 0.1 0.055 12.8 0.1 1.5 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily IMP_cyclohyd PF07826.11 gi|289581626|ref|YP_003480092.1| - 1.1e-60 204.6 0.0 1.2e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HNH PF01844.23 gi|289581627|ref|YP_003480093.1| - 0.15 12.3 22.2 0.49 10.6 0.7 3.7 3 1 0 3 3 3 0 HNH endonuclease Apocytochr_F_N PF16639.5 gi|289581627|ref|YP_003480093.1| - 0.56 10.5 3.0 4.6 7.5 0.2 2.4 2 0 0 2 2 2 0 Apocytochrome F, N-terminal Cytochrom_C_2 PF01322.20 gi|289581627|ref|YP_003480093.1| - 7.8 7.4 7.9 13 6.7 1.2 2.7 3 0 0 3 3 3 0 Cytochrome C' Rhodanese PF00581.20 gi|289581628|ref|YP_003480094.1| - 3.5e-08 33.9 0.0 7.5e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Oxidored_FMN PF00724.20 gi|289581629|ref|YP_003480095.1| - 1.7e-35 122.9 0.0 6.8e-34 117.6 0.0 2.3 2 1 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family NMO PF03060.15 gi|289581629|ref|YP_003480095.1| - 0.0025 17.3 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|289581629|ref|YP_003480095.1| - 0.053 13.0 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein CGI-121 PF08617.10 gi|289581630|ref|YP_003480096.1| - 2.6e-11 43.9 0.0 3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Cas9_b_hairpin PF17893.1 gi|289581630|ref|YP_003480096.1| - 0.026 14.3 0.2 7.5 6.4 0.0 2.4 2 0 0 2 2 2 0 CRISPR-associated endonuclease Cas9 beta-hairpin domain PGDYG PF14083.6 gi|289581630|ref|YP_003480096.1| - 0.076 13.3 0.1 0.13 12.5 0.1 1.4 1 1 0 1 1 1 0 PGDYG protein Cytochrom_B562 PF07361.11 gi|289581630|ref|YP_003480096.1| - 0.11 13.2 0.0 2.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Cytochrome b562 DEAD PF00270.29 gi|289581631|ref|YP_003480097.1| - 5.6e-23 81.6 0.0 9.4e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|289581631|ref|YP_003480097.1| - 9.3e-09 35.8 2.5 9.5e-09 35.7 0.3 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|289581631|ref|YP_003480097.1| - 3.9e-08 33.5 0.0 7.4e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|289581631|ref|YP_003480097.1| - 1.9e-07 31.4 0.0 1.7e-06 28.3 0.0 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH PF00633.23 gi|289581631|ref|YP_003480097.1| - 0.0014 18.4 0.0 0.087 12.7 0.0 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|289581631|ref|YP_003480097.1| - 0.0047 16.7 0.0 0.015 15.1 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Usp PF00582.26 gi|289581632|ref|YP_003480098.1| - 2.5e-10 41.0 0.0 3.1e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family UIM PF02809.20 gi|289581632|ref|YP_003480098.1| - 0.78 9.8 2.3 1.4 9.0 2.3 1.4 1 0 0 1 1 1 0 Ubiquitin interaction motif zinc_ribbon_2 PF13240.6 gi|289581633|ref|YP_003480099.1| - 2.4e-05 23.9 1.8 3.3e-05 23.4 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289581633|ref|YP_003480099.1| - 0.00023 20.4 1.9 0.00033 19.9 1.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|289581633|ref|YP_003480099.1| - 0.0017 18.4 4.2 0.0027 17.8 4.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|289581633|ref|YP_003480099.1| - 0.0033 17.4 0.5 0.0046 17.0 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|289581633|ref|YP_003480099.1| - 0.0065 16.5 0.4 0.0078 16.2 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|289581633|ref|YP_003480099.1| - 0.0096 15.8 3.0 1.5 8.8 0.1 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|289581633|ref|YP_003480099.1| - 0.01 15.6 1.0 0.013 15.3 1.0 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin_2 PF18073.1 gi|289581633|ref|YP_003480099.1| - 0.017 14.9 3.7 0.037 13.8 2.8 1.8 1 1 1 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_15 PF17032.5 gi|289581633|ref|YP_003480099.1| - 0.019 15.7 1.6 0.023 15.4 1.6 1.1 1 0 0 1 1 1 0 zinc-ribbon family PhnA_Zn_Ribbon PF08274.12 gi|289581633|ref|YP_003480099.1| - 0.022 14.7 4.8 0.063 13.2 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|289581633|ref|YP_003480099.1| - 0.062 12.9 0.3 0.062 12.9 0.3 2.0 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger NRDD PF13597.6 gi|289581633|ref|YP_003480099.1| - 0.068 12.0 0.9 0.077 11.8 0.9 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF4776 PF16003.5 gi|289581633|ref|YP_003480099.1| - 0.1 11.6 1.2 0.11 11.4 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) Ribosomal_L37e PF01907.19 gi|289581633|ref|YP_003480099.1| - 0.12 12.6 0.6 0.19 11.9 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.10 gi|289581633|ref|YP_003480099.1| - 0.26 11.5 4.6 0.54 10.4 4.6 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|289581633|ref|YP_003480099.1| - 0.28 10.9 4.4 0.69 9.6 4.4 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|289581633|ref|YP_003480099.1| - 0.63 9.7 4.6 5.5 6.8 4.6 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|289581633|ref|YP_003480099.1| - 0.78 9.7 6.1 4.7 7.2 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG YhfH PF14149.6 gi|289581633|ref|YP_003480099.1| - 0.81 9.7 4.3 38 4.4 0.6 2.1 1 1 1 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.11 gi|289581633|ref|YP_003480099.1| - 0.94 9.5 3.2 2 8.4 3.3 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|289581633|ref|YP_003480099.1| - 6.7 6.8 7.7 6.4 6.8 2.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PHO4 PF01384.20 gi|289581634|ref|YP_003480100.1| - 2.7e-39 135.2 25.9 4.7e-39 134.4 25.9 1.3 1 0 0 1 1 1 1 Phosphate transporter family DICT PF10069.9 gi|289581635|ref|YP_003480101.1| - 3.7e-05 23.5 0.0 0.00018 21.3 0.0 2.0 1 1 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system CHASE6_C PF17150.4 gi|289581635|ref|YP_003480101.1| - 0.093 13.4 0.0 0.42 11.3 0.0 1.9 2 0 0 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain DUF507 PF04368.13 gi|289581636|ref|YP_003480102.1| - 0.086 12.8 0.0 0.096 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF507) IstB_IS21_ATP PF08483.11 gi|289581636|ref|YP_003480102.1| - 0.098 12.6 2.1 0.1 12.5 0.2 2.0 2 0 0 2 2 2 0 IstB-like ATP binding N-terminal Fer4_15 PF13459.6 gi|289581637|ref|YP_003480103.1| - 1.8e-20 73.4 2.4 2.1e-20 73.2 2.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|289581637|ref|YP_003480103.1| - 3.5e-06 27.5 0.8 7.1e-06 26.5 0.8 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|289581637|ref|YP_003480103.1| - 0.017 15.2 1.3 0.23 11.6 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|289581637|ref|YP_003480103.1| - 0.025 14.4 2.0 3.2 7.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|289581637|ref|YP_003480103.1| - 0.075 13.6 0.3 3.6 8.3 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|289581637|ref|YP_003480103.1| - 0.14 12.3 0.1 0.73 10.0 0.1 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster HTH_10 PF04967.12 gi|289581638|ref|YP_003480104.1| - 4.1e-15 55.3 0.1 1e-14 54.0 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain p450 PF00067.22 gi|289581639|ref|YP_003480105.1| - 1.5e-71 241.6 0.0 7.5e-44 150.2 0.0 2.0 2 0 0 2 2 2 2 Cytochrome P450 HAD_2 PF13419.6 gi|289581640|ref|YP_003480106.1| - 1.3e-19 71.0 0.0 1.6e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289581640|ref|YP_003480106.1| - 1e-12 47.9 0.0 2.5e-12 46.7 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|289581640|ref|YP_003480106.1| - 1.2e-06 28.9 0.0 3.4e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289581640|ref|YP_003480106.1| - 0.0058 17.0 0.1 0.0095 16.4 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Ldh_1_N PF00056.23 gi|289581641|ref|YP_003480107.1| - 4.7e-39 133.7 0.3 7.1e-39 133.1 0.3 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|289581641|ref|YP_003480107.1| - 1.5e-29 103.0 0.0 2.5e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF5053 PF16476.5 gi|289581641|ref|YP_003480107.1| - 0.2 11.4 0.6 2 8.2 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF5053) LDcluster4 PF18306.1 gi|289581642|ref|YP_003480108.1| - 2.4e-36 124.7 6.7 2.6e-36 124.6 6.7 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|289581642|ref|YP_003480108.1| - 5e-09 36.4 0.2 9.2e-09 35.5 0.2 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|289581642|ref|YP_003480108.1| - 0.00014 21.2 2.9 0.00018 20.8 2.8 1.3 1 1 0 1 1 1 1 DNA recombination-mediator protein A Acetyltransf_10 PF13673.7 gi|289581643|ref|YP_003480109.1| - 3.4e-13 49.6 0.0 4.4e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289581643|ref|YP_003480109.1| - 2.1e-11 44.0 0.0 3e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289581643|ref|YP_003480109.1| - 2e-10 40.9 0.0 2.4e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|289581643|ref|YP_003480109.1| - 1.2e-05 25.4 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289581643|ref|YP_003480109.1| - 0.00059 19.8 0.0 0.0012 18.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.6 gi|289581643|ref|YP_003480109.1| - 0.033 13.6 0.0 0.047 13.1 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Auto_anti-p27 PF06677.12 gi|289581644|ref|YP_003480110.1| - 2.7e-13 49.8 0.9 3.9e-13 49.3 0.9 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|289581644|ref|YP_003480110.1| - 0.005 16.8 1.1 0.014 15.4 1.1 1.7 1 0 0 1 1 1 1 Double zinc ribbon Lin-8 PF03353.15 gi|289581644|ref|YP_003480110.1| - 0.057 13.0 12.7 0.094 12.3 12.7 1.3 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist FAM75 PF14650.6 gi|289581644|ref|YP_003480110.1| - 0.094 12.2 10.4 0.16 11.5 10.4 1.4 1 0 0 1 1 1 0 FAM75 family Mad3_BUB1_I PF08311.12 gi|289581644|ref|YP_003480110.1| - 0.094 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 SOG2 PF10428.9 gi|289581644|ref|YP_003480110.1| - 0.22 10.7 14.2 0.26 10.5 14.2 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein zinc_ribbon_2 PF13240.6 gi|289581644|ref|YP_003480110.1| - 0.87 9.4 4.0 2 8.2 4.0 1.7 1 0 0 1 1 1 0 zinc-ribbon domain GREB1 PF15782.5 gi|289581644|ref|YP_003480110.1| - 9.2 3.2 11.5 11 3.0 11.5 1.1 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer zf-NADH-PPase PF09297.11 gi|289581644|ref|YP_003480110.1| - 9.2 6.0 7.6 85 2.9 7.5 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Na_H_Exchanger PF00999.21 gi|289581645|ref|YP_003480111.1| - 2.2e-50 171.6 45.1 3e-50 171.1 45.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|289581645|ref|YP_003480111.1| - 1.1e-07 32.4 2.2 1.1e-07 32.4 2.2 1.8 2 0 0 2 2 2 1 Universal stress protein family VKG_Carbox PF05090.14 gi|289581646|ref|YP_003480112.1| - 1.9e-12 46.7 11.6 2.5e-12 46.4 11.6 1.2 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase DUF4175 PF13779.6 gi|289581646|ref|YP_003480112.1| - 0.0007 17.7 0.3 0.0011 17.0 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4175) Flavi_NS4A PF01350.17 gi|289581646|ref|YP_003480112.1| - 0.039 13.9 0.2 0.11 12.4 0.2 1.7 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A ERCC4 PF02732.15 gi|289581647|ref|YP_003480113.1| - 1.1e-21 77.6 0.1 3.1e-21 76.2 0.0 1.8 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|289581647|ref|YP_003480113.1| - 1.3e-21 77.0 0.0 6.8e-21 74.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|289581647|ref|YP_003480113.1| - 4.8e-15 55.8 0.0 1.5e-14 54.2 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|289581647|ref|YP_003480113.1| - 1.3e-10 41.6 0.0 3.8e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|289581647|ref|YP_003480113.1| - 9.5e-10 38.9 0.3 6e-09 36.4 0.1 2.4 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|289581647|ref|YP_003480113.1| - 8.2e-09 35.4 0.5 3.4e-08 33.5 0.2 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|289581647|ref|YP_003480113.1| - 0.00015 21.4 0.1 0.026 14.4 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif MEDS PF14417.6 gi|289581647|ref|YP_003480113.1| - 0.0019 18.1 0.9 1.2 9.0 0.2 2.8 2 0 0 2 2 2 2 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 5_3_exonuc PF01367.20 gi|289581647|ref|YP_003480113.1| - 0.014 15.9 0.0 0.061 13.9 0.0 2.2 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.6 gi|289581647|ref|YP_003480113.1| - 0.019 15.1 0.4 0.14 12.3 0.1 2.4 1 1 1 2 2 2 0 Helicase C-terminal domain DUF4407 PF14362.6 gi|289581647|ref|YP_003480113.1| - 0.074 12.4 9.3 0.17 11.2 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) OAM_dimer PF16554.5 gi|289581647|ref|YP_003480113.1| - 0.12 12.8 0.0 0.36 11.3 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain of d-ornithine 4,5-aminomutase DUF4618 PF15397.6 gi|289581647|ref|YP_003480113.1| - 0.23 10.9 6.3 0.1 12.0 2.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Flavin_Reduct PF01613.18 gi|289581648|ref|YP_003480114.1| - 1.1e-16 61.3 0.0 1.5e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain CSTF_C PF14304.6 gi|289581648|ref|YP_003480114.1| - 0.27 10.8 0.5 0.45 10.1 0.2 1.5 2 0 0 2 2 2 0 Transcription termination and cleavage factor C-terminal MFS_1 PF07690.16 gi|289581649|ref|YP_003480115.1| - 2.9e-43 148.1 79.6 3.5e-35 121.6 46.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|289581649|ref|YP_003480115.1| - 7.3e-08 31.7 23.6 2.2e-05 23.5 22.2 2.2 1 1 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.19 gi|289581649|ref|YP_003480115.1| - 1.8e-05 23.7 5.3 1.8e-05 23.7 5.3 2.8 1 1 1 2 2 2 1 LacY proton/sugar symporter DUF4781 PF16013.5 gi|289581649|ref|YP_003480115.1| - 0.44 9.3 4.8 1 8.1 4.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF3464 PF11947.8 gi|289581649|ref|YP_003480115.1| - 1.5 8.6 9.3 0.47 10.2 1.3 2.5 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Peptidase_S13 PF02113.15 gi|289581651|ref|YP_003480117.1| - 1.3e-78 264.7 0.2 1.8e-78 264.2 0.2 1.1 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.20 gi|289581651|ref|YP_003480117.1| - 0.0052 16.2 0.0 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 gi|289581651|ref|YP_003480117.1| - 0.0062 16.2 0.1 0.89 9.1 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase enzyme family DUF5518 PF17647.1 gi|289581654|ref|YP_003480120.1| - 1.9e-10 40.9 19.0 2.3e-10 40.6 19.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Phage_holin_4_2 PF04020.13 gi|289581654|ref|YP_003480120.1| - 0.04 14.6 4.6 0.31 11.7 1.4 2.1 2 0 0 2 2 2 0 Mycobacterial 4 TMS phage holin, superfamily IV LapA_dom PF06305.11 gi|289581654|ref|YP_003480120.1| - 9.8 6.1 6.3 2.8 7.8 0.4 2.8 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain HGTP_anticodon PF03129.20 gi|289581656|ref|YP_003480122.1| - 2.4e-22 78.9 0.1 5.5e-22 77.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|289581656|ref|YP_003480122.1| - 1.5e-08 34.8 0.0 8.5e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|289581656|ref|YP_003480122.1| - 0.0013 18.0 0.5 1.6 8.3 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|289581656|ref|YP_003480122.1| - 0.0056 16.9 0.1 0.52 10.6 0.0 2.9 3 0 0 3 3 3 1 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|289581656|ref|YP_003480122.1| - 0.033 13.9 1.3 3.9 7.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581656|ref|YP_003480122.1| - 0.049 13.8 0.4 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|289581656|ref|YP_003480122.1| - 0.16 11.5 5.1 0.29 10.7 1.8 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|289581656|ref|YP_003480122.1| - 0.2 11.4 1.7 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|289581656|ref|YP_003480122.1| - 0.4 10.7 1.2 7.3 6.6 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 CBS PF00571.28 gi|289581657|ref|YP_003480123.1| - 2.6e-31 107.8 9.0 1e-10 41.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain BsuPI PF12690.7 gi|289581659|ref|YP_003480125.1| - 0.0027 17.7 0.1 0.0048 16.9 0.1 1.4 1 1 0 1 1 1 1 Intracellular proteinase inhibitor DUF296 PF03479.15 gi|289581661|ref|YP_003480127.1| - 6.1e-19 68.4 0.0 7e-19 68.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PolC_DP2 PF03833.13 gi|289581662|ref|YP_003480128.1| - 0 1305.8 0.0 0 1303.6 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|289581662|ref|YP_003480128.1| - 2.9e-09 37.0 0.0 7.9e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|289581662|ref|YP_003480128.1| - 0.061 13.3 14.7 2.1 8.4 10.6 2.5 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.7 gi|289581662|ref|YP_003480128.1| - 0.09 12.8 18.1 2.2 8.4 11.8 3.0 2 1 0 2 2 2 0 Double zinc ribbon Hint PF01079.20 gi|289581662|ref|YP_003480128.1| - 0.099 12.1 0.0 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 Hint module HypA PF01155.19 gi|289581662|ref|YP_003480128.1| - 0.24 11.5 17.8 2.5 8.1 0.3 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SBF PF01758.16 gi|289581663|ref|YP_003480129.1| - 7.5e-43 146.5 14.2 7.5e-43 146.5 14.2 1.8 2 0 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|289581663|ref|YP_003480129.1| - 1.5e-18 67.2 21.7 1.9e-18 66.8 21.7 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Bac_export_2 PF01312.19 gi|289581663|ref|YP_003480129.1| - 9.8 5.3 15.1 0.093 11.9 1.4 2.8 2 1 1 3 3 3 0 FlhB HrpN YscU SpaS Family FAD-oxidase_C PF02913.19 gi|289581664|ref|YP_003480130.1| - 7.7e-56 189.5 0.0 1e-55 189.1 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|289581664|ref|YP_003480130.1| - 3.3e-38 130.5 0.1 5.6e-38 129.8 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain ApbA_C PF08546.11 gi|289581665|ref|YP_003480131.1| - 1.3e-35 122.3 0.5 2e-35 121.7 0.5 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|289581665|ref|YP_003480131.1| - 1.7e-30 105.7 0.1 2.8e-30 105.0 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|289581665|ref|YP_003480131.1| - 0.029 14.6 0.4 0.13 12.5 0.1 2.2 2 2 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|289581665|ref|YP_003480131.1| - 0.095 13.3 0.5 2.6 8.7 0.1 2.9 2 1 2 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase NifU PF01106.17 gi|289581666|ref|YP_003480132.1| - 1.5e-13 50.7 0.0 2.2e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain Prok_Ub PF14454.6 gi|289581667|ref|YP_003480133.1| - 0.048 13.3 0.2 0.19 11.4 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic Ubiquitin DUF5605 PF18310.1 gi|289581667|ref|YP_003480133.1| - 0.078 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5605) PI31_Prot_N PF11566.8 gi|289581668|ref|YP_003480134.1| - 0.19 11.5 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 PI31 proteasome regulator N-terminal Sigma70_ner PF04546.13 gi|289581669|ref|YP_003480135.1| - 3.5 7.4 9.9 5.4 6.8 9.9 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region Nop14 PF04147.12 gi|289581669|ref|YP_003480135.1| - 6.3 4.9 12.4 6.9 4.7 12.4 1.1 1 0 0 1 1 1 0 Nop14-like family HET-s_218-289 PF11558.8 gi|289581670|ref|YP_003480136.1| - 0.039 14.0 0.0 0.23 11.5 0.0 2.3 2 0 0 2 2 2 0 Het-s 218-289 PKD PF00801.20 gi|289581671|ref|YP_003480137.1| - 2.6e-06 27.2 0.6 2.6e-06 27.2 0.6 2.5 3 0 0 3 3 3 1 PKD domain CARDB PF07705.11 gi|289581671|ref|YP_003480137.1| - 0.00026 21.2 0.7 0.00026 21.2 0.7 2.9 3 1 0 3 3 3 1 CARDB N_BRCA1_IG PF16158.5 gi|289581671|ref|YP_003480137.1| - 0.0025 18.5 0.1 0.0069 17.1 0.1 1.7 1 0 0 1 1 1 1 Ig-like domain from next to BRCA1 gene DUF4469 PF14734.6 gi|289581671|ref|YP_003480137.1| - 0.11 12.7 0.5 0.3 11.3 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4469) with IG-like fold DUF4307 PF14155.6 gi|289581671|ref|YP_003480137.1| - 2.8 7.8 6.0 12 5.8 0.4 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4307) ZnuA PF01297.17 gi|289581672|ref|YP_003480138.1| - 2.7e-42 144.9 0.0 3.2e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic TAT_signal PF10518.9 gi|289581672|ref|YP_003480138.1| - 0.008 16.0 2.1 0.014 15.2 2.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC-3 PF00950.17 gi|289581673|ref|YP_003480139.1| - 5.1e-53 180.2 35.2 8.4e-53 179.5 35.2 1.3 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|289581673|ref|YP_003480139.1| - 1.2e-05 24.5 32.4 1.2e-05 24.5 32.4 2.2 1 1 0 2 2 2 1 FecCD transport family PHP_C PF13263.6 gi|289581674|ref|YP_003480140.1| - 9.8e-23 79.7 0.1 5e-22 77.4 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|289581674|ref|YP_003480140.1| - 5.7e-05 23.5 0.0 8.7e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 PHP domain DHHA1 PF02272.19 gi|289581675|ref|YP_003480141.1| - 9.2e-15 55.3 1.1 8.4e-13 48.9 0.9 2.5 2 0 0 2 2 2 1 DHHA1 domain Arm-DNA-bind_3 PF13356.6 gi|289581675|ref|YP_003480141.1| - 0.059 13.8 0.0 0.2 12.1 0.0 1.9 1 0 0 1 1 1 0 Arm DNA-binding domain DHH PF01368.20 gi|289581675|ref|YP_003480141.1| - 0.063 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 DHH family FliG_C PF01706.16 gi|289581676|ref|YP_003480142.1| - 0.018 15.2 0.1 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 FliG C-terminal domain TAT_signal PF10518.9 gi|289581676|ref|YP_003480142.1| - 0.072 13.0 2.3 0.14 12.0 2.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HEM4 PF02602.15 gi|289581678|ref|YP_003480144.1| - 7.7e-41 139.9 3.3 9.3e-41 139.7 3.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.20 gi|289581679|ref|YP_003480145.1| - 7.3e-57 192.7 1.0 8.9e-57 192.4 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RFamide_26RFa PF11109.8 gi|289581679|ref|YP_003480145.1| - 0.086 13.4 0.8 0.13 12.7 0.2 1.6 2 0 0 2 2 2 0 Orexigenic neuropeptide Qrfp/P518 Porphobil_deam PF01379.20 gi|289581680|ref|YP_003480146.1| - 2.9e-65 219.6 0.3 3.2e-52 177.0 0.1 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|289581680|ref|YP_003480146.1| - 1.2e-08 35.2 0.1 3e-08 33.9 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF917 PF06032.12 gi|289581680|ref|YP_003480146.1| - 0.032 13.1 0.1 1 8.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF917) Bac_globin PF01152.21 gi|289581681|ref|YP_003480147.1| - 2.1e-24 86.0 0.1 2.5e-24 85.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|289581681|ref|YP_003480147.1| - 0.0025 17.8 0.1 0.0055 16.6 0.1 1.7 1 1 0 1 1 1 1 Protoglobin Aminotran_3 PF00202.21 gi|289581683|ref|YP_003480149.1| - 2.5e-65 220.7 0.0 3.1e-65 220.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|289581683|ref|YP_003480149.1| - 0.12 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II bPH_2 PF03703.14 gi|289581684|ref|YP_003480150.1| - 1.8e-05 24.9 0.4 3e-05 24.1 0.4 1.4 1 0 0 1 1 1 1 Bacterial PH domain ALAD PF00490.21 gi|289581685|ref|YP_003480151.1| - 1.2e-140 468.2 0.0 1.4e-140 468.0 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Asparaginase PF00710.20 gi|289581687|ref|YP_003480153.1| - 1.3e-52 178.2 0.3 1.1e-51 175.1 0.2 2.0 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|289581687|ref|YP_003480153.1| - 9.4e-20 70.9 0.8 6.3e-19 68.3 0.1 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain MFS_1 PF07690.16 gi|289581688|ref|YP_003480154.1| - 1.7e-52 178.5 68.9 3.3e-42 144.7 36.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|289581688|ref|YP_003480154.1| - 1.8e-09 37.0 23.1 3.8e-05 22.7 9.8 3.1 2 2 1 3 3 3 3 Sugar (and other) transporter MFS_4 PF06779.14 gi|289581688|ref|YP_003480154.1| - 8.7e-06 25.3 29.6 1.1e-05 24.9 29.6 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|289581688|ref|YP_003480154.1| - 0.015 13.6 0.2 0.015 13.6 0.2 2.5 1 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Fer4 PF00037.27 gi|289581689|ref|YP_003480155.1| - 3e-12 45.8 12.6 6.5e-07 28.9 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|289581689|ref|YP_003480155.1| - 1.2e-11 45.0 20.8 8.3e-07 29.5 7.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289581689|ref|YP_003480155.1| - 3.3e-08 33.6 4.0 5.9e-08 32.8 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289581689|ref|YP_003480155.1| - 1e-06 28.8 9.3 4.5e-06 26.7 9.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|289581689|ref|YP_003480155.1| - 1.4e-06 28.1 13.4 0.00011 22.1 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|289581689|ref|YP_003480155.1| - 3.9e-06 26.9 17.8 5.6e-05 23.2 7.6 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289581689|ref|YP_003480155.1| - 7e-06 26.5 1.3 0.074 13.6 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|289581689|ref|YP_003480155.1| - 1e-05 26.4 5.0 0.0006 20.7 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|289581689|ref|YP_003480155.1| - 0.00011 22.6 6.4 0.0024 18.3 6.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|289581689|ref|YP_003480155.1| - 0.00058 20.0 2.9 0.00058 20.0 2.9 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289581689|ref|YP_003480155.1| - 0.00071 19.5 10.2 0.017 15.2 3.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|289581689|ref|YP_003480155.1| - 0.0017 18.7 1.8 0.0017 18.7 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|289581689|ref|YP_003480155.1| - 0.002 18.7 13.7 0.039 14.5 13.7 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|289581689|ref|YP_003480155.1| - 0.0025 18.6 10.2 0.0041 18.0 4.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain ETF_QO PF05187.13 gi|289581689|ref|YP_003480155.1| - 0.012 15.7 0.2 0.019 15.1 0.2 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|289581689|ref|YP_003480155.1| - 3.5 8.4 15.4 37 5.2 15.4 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain E3_UbLigase_RBR PF18091.1 gi|289581690|ref|YP_003480156.1| - 0.042 14.0 0.1 0.045 13.9 0.1 1.2 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain PHP PF02811.19 gi|289581691|ref|YP_003480157.1| - 4.9e-06 26.9 0.0 5.2e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|289581691|ref|YP_003480157.1| - 0.048 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 PHP-associated DUF2795 PF11387.8 gi|289581692|ref|YP_003480158.1| - 0.0027 17.9 0.0 0.0089 16.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2795) CxxCxxCC PF03692.15 gi|289581695|ref|YP_003480161.1| - 4.8e-06 27.2 1.3 0.042 14.5 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Helicase_C_2 PF13307.6 gi|289581697|ref|YP_003480163.1| - 3e-19 69.8 0.0 4.4e-19 69.3 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|289581697|ref|YP_003480163.1| - 9.1e-06 25.4 0.0 1.6e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|289581697|ref|YP_003480163.1| - 8.9e-05 22.6 0.0 0.044 13.8 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|289581697|ref|YP_003480163.1| - 0.00027 20.8 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|289581697|ref|YP_003480163.1| - 0.00067 19.9 0.0 0.0029 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|289581697|ref|YP_003480163.1| - 0.001 18.9 0.1 1.2 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|289581697|ref|YP_003480163.1| - 0.0061 17.0 0.5 0.029 14.8 0.1 2.4 1 1 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|289581697|ref|YP_003480163.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI OrsD PF12013.8 gi|289581697|ref|YP_003480163.1| - 0.021 15.3 0.2 0.051 14.0 0.2 1.6 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D DXP_redisom_C PF08436.12 gi|289581697|ref|YP_003480163.1| - 0.039 14.1 0.0 0.092 12.9 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PhoH PF02562.16 gi|289581697|ref|YP_003480163.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|289581697|ref|YP_003480163.1| - 0.1 12.2 0.3 2.2 7.8 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|289581697|ref|YP_003480163.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|289581697|ref|YP_003480163.1| - 0.13 11.5 0.0 4.1 6.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|289581697|ref|YP_003480163.1| - 0.19 12.2 0.0 6.3 7.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.16 gi|289581698|ref|YP_003480164.1| - 3.5e-49 167.3 0.0 3.1e-48 164.2 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein MTS PF05175.14 gi|289581698|ref|YP_003480164.1| - 8.6e-06 25.4 0.0 0.0019 17.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|289581698|ref|YP_003480164.1| - 5.3e-05 22.8 0.0 8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|289581698|ref|YP_003480164.1| - 0.0009 19.9 0.0 0.0038 17.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|289581698|ref|YP_003480164.1| - 0.0077 15.7 0.0 0.033 13.6 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Serglycin PF04360.12 gi|289581698|ref|YP_003480164.1| - 0.015 15.3 0.2 0.025 14.5 0.2 1.3 1 0 0 1 1 1 0 Serglycin tRNA_U5-meth_tr PF05958.11 gi|289581698|ref|YP_003480164.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|289581698|ref|YP_003480164.1| - 0.02 14.3 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Trm5_N PF18093.1 gi|289581698|ref|YP_003480164.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain Cons_hypoth95 PF03602.15 gi|289581698|ref|YP_003480164.1| - 0.13 11.9 0.0 0.36 10.4 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|289581698|ref|YP_003480164.1| - 0.13 12.9 0.0 0.61 10.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain IMUP PF15761.5 gi|289581698|ref|YP_003480164.1| - 0.25 12.0 2.1 0.54 11.0 2.1 1.5 1 0 0 1 1 1 0 Immortalisation up-regulated protein NMD3 PF04981.13 gi|289581699|ref|YP_003480165.1| - 4.1e-65 219.6 0.1 6e-65 219.1 0.1 1.2 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|289581699|ref|YP_003480165.1| - 0.0014 18.9 0.1 0.13 12.6 0.0 3.0 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|289581699|ref|YP_003480165.1| - 0.002 18.1 4.9 0.065 13.3 1.6 3.1 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289581699|ref|YP_003480165.1| - 0.0051 16.5 3.0 0.62 9.9 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain GFA PF04828.14 gi|289581699|ref|YP_003480165.1| - 0.052 13.9 1.0 9.9 6.6 0.0 3.4 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF2703 PF10865.8 gi|289581699|ref|YP_003480165.1| - 0.088 13.0 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) FYVE PF01363.21 gi|289581699|ref|YP_003480165.1| - 0.1 12.7 1.1 7.9 6.7 0.7 2.9 2 1 0 2 2 2 0 FYVE zinc finger zf_UBZ PF18439.1 gi|289581699|ref|YP_003480165.1| - 0.23 11.1 9.4 2.1 8.0 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger PknG_rubred PF16919.5 gi|289581699|ref|YP_003480165.1| - 0.27 11.4 7.8 0.29 11.3 0.2 3.3 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain TF_Zn_Ribbon PF08271.12 gi|289581699|ref|YP_003480165.1| - 0.41 10.2 6.2 19 4.9 1.3 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|289581699|ref|YP_003480165.1| - 1.2 9.1 16.0 0.88 9.5 0.2 3.8 4 0 0 4 4 3 0 Nudix N-terminal DUF211 PF02680.14 gi|289581699|ref|YP_003480165.1| - 1.7 8.8 5.1 2.2 8.5 1.1 2.3 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 zf-ribbon_3 PF13248.6 gi|289581699|ref|YP_003480165.1| - 2.1 7.9 8.8 4.3 6.9 0.2 3.3 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.9 gi|289581699|ref|YP_003480165.1| - 6.4 6.9 8.9 34 4.6 0.9 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|289581699|ref|YP_003480165.1| - 6.6 6.5 12.4 0.77 9.5 0.5 2.9 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain PQQ_2 PF13360.6 gi|289581700|ref|YP_003480166.1| - 5.4e-22 78.5 5.8 1.4e-18 67.3 1.6 3.3 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|289581700|ref|YP_003480166.1| - 4.7e-16 58.7 35.2 0.0008 19.8 1.0 8.9 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|289581700|ref|YP_003480166.1| - 1.5e-13 49.9 13.9 0.00085 19.1 0.0 8.5 8 1 0 8 8 8 3 PQQ enzyme repeat DUF5319 PF17252.2 gi|289581700|ref|YP_003480166.1| - 0.062 13.5 0.6 0.15 12.3 0.6 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5319) Macoilin PF09726.9 gi|289581700|ref|YP_003480166.1| - 1.7 7.1 4.0 2.3 6.7 4.0 1.1 1 0 0 1 1 1 0 Macoilin family Peptidase_M48 PF01435.18 gi|289581701|ref|YP_003480167.1| - 3.6e-42 144.3 0.0 6.6e-42 143.5 0.0 1.4 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289581701|ref|YP_003480167.1| - 2.5e-07 30.2 0.2 2.2e-06 27.1 0.0 2.1 2 1 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289581701|ref|YP_003480167.1| - 0.057 13.3 0.0 0.085 12.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.6 gi|289581701|ref|YP_003480167.1| - 0.12 12.7 0.1 0.31 11.3 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) DUF3357 PF11837.8 gi|289581702|ref|YP_003480168.1| - 0.067 13.7 0.1 0.26 11.8 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3357) OppC_N PF12911.7 gi|289581702|ref|YP_003480168.1| - 0.22 11.5 0.8 0.26 11.3 0.0 1.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Prominin PF05478.11 gi|289581702|ref|YP_003480168.1| - 0.68 7.8 5.2 0.84 7.5 5.2 1.0 1 0 0 1 1 1 0 Prominin DUF3995 PF13160.6 gi|289581703|ref|YP_003480169.1| - 0.00033 21.0 0.6 0.0004 20.7 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3995) FxsA PF04186.13 gi|289581703|ref|YP_003480169.1| - 0.013 15.6 0.3 0.061 13.5 0.0 1.9 2 0 0 2 2 2 0 FxsA cytoplasmic membrane protein Shadoo PF14999.6 gi|289581703|ref|YP_003480169.1| - 0.044 13.9 0.3 0.062 13.4 0.3 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective SKG6 PF08693.10 gi|289581703|ref|YP_003480169.1| - 5 6.6 8.5 0.73 9.3 4.3 1.8 1 1 1 2 2 2 0 Transmembrane alpha-helix domain DNA_primase_lrg PF04104.14 gi|289581704|ref|YP_003480170.1| - 1.3e-34 119.9 0.0 2.5e-34 118.9 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2967 PF11179.8 gi|289581704|ref|YP_003480170.1| - 0.16 10.0 3.5 0.22 9.6 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2967) PRR18 PF15671.5 gi|289581704|ref|YP_003480170.1| - 0.72 9.7 5.8 1.7 8.4 5.8 1.6 1 0 0 1 1 1 0 Proline-rich protein family 18 Abhydrolase_1 PF00561.20 gi|289581705|ref|YP_003480171.1| - 1.1e-19 71.1 0.0 6.3e-18 65.3 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289581705|ref|YP_003480171.1| - 2.1e-18 67.8 10.7 2.5e-18 67.5 10.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|289581705|ref|YP_003480171.1| - 1.1e-11 44.5 0.0 1.6e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|289581705|ref|YP_003480171.1| - 0.0016 18.2 0.0 0.26 11.0 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family UPF0227 PF05728.12 gi|289581705|ref|YP_003480171.1| - 0.0039 17.1 0.1 0.32 10.9 0.1 2.4 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|289581705|ref|YP_003480171.1| - 0.0046 15.7 0.0 0.0081 14.9 0.0 1.3 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.21 gi|289581705|ref|YP_003480171.1| - 0.041 13.4 0.0 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|289581705|ref|YP_003480171.1| - 0.094 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 gi|289581705|ref|YP_003480171.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein HalOD1 PF18545.1 gi|289581706|ref|YP_003480172.1| - 8.8e-22 77.2 0.2 1.3e-21 76.6 0.2 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Roughex PF06020.11 gi|289581706|ref|YP_003480172.1| - 0.83 8.7 4.7 1 8.4 4.7 1.1 1 0 0 1 1 1 0 Drosophila roughex protein PCNA_N PF00705.18 gi|289581707|ref|YP_003480173.1| - 1.1e-08 34.8 0.8 1.6e-08 34.3 0.1 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|289581707|ref|YP_003480173.1| - 3.9e-06 27.1 0.0 9.3e-06 25.8 0.0 1.8 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|289581707|ref|YP_003480173.1| - 0.069 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad9 Rad1 PF02144.16 gi|289581707|ref|YP_003480173.1| - 0.13 11.3 0.0 0.38 9.8 0.0 1.8 1 1 1 2 2 2 0 Repair protein Rad1/Rec1/Rad17 Response_reg PF00072.24 gi|289581708|ref|YP_003480174.1| - 1.1e-24 86.8 0.0 2.3e-23 82.5 0.0 2.5 1 1 1 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|289581708|ref|YP_003480174.1| - 4.2e-20 72.0 0.0 1.4e-19 70.3 0.0 2.0 2 0 0 2 2 1 1 PAS domain HATPase_c PF02518.26 gi|289581708|ref|YP_003480174.1| - 1.8e-17 63.9 0.1 3.8e-17 62.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289581708|ref|YP_003480174.1| - 8.5e-11 41.7 0.6 2.6e-10 40.2 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|289581708|ref|YP_003480174.1| - 1.3e-10 41.3 0.0 3.8e-10 39.8 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|289581708|ref|YP_003480174.1| - 6.9e-09 35.9 0.0 2.4e-08 34.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|289581708|ref|YP_003480174.1| - 1.6e-07 31.2 0.0 7.1e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|289581708|ref|YP_003480174.1| - 2.6e-06 27.7 0.0 7.4e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|289581708|ref|YP_003480174.1| - 0.00084 19.3 0.1 0.0028 17.6 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|289581708|ref|YP_003480174.1| - 0.024 14.5 0.0 0.14 12.1 0.0 2.2 2 1 0 2 2 2 0 GHKL domain OKR_DC_1_N PF03709.15 gi|289581708|ref|YP_003480174.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain BRCT_3 PF18428.1 gi|289581708|ref|YP_003480174.1| - 0.2 11.7 0.0 13 6.0 0.0 2.4 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain Response_reg PF00072.24 gi|289581709|ref|YP_003480175.1| - 3e-14 53.2 1.0 7.9e-12 45.3 1.0 2.6 1 1 0 1 1 1 1 Response regulator receiver domain Serglycin PF04360.12 gi|289581709|ref|YP_003480175.1| - 2 8.3 5.0 3.5 7.6 5.0 1.3 1 0 0 1 1 1 0 Serglycin HxlR PF01638.17 gi|289581710|ref|YP_003480176.1| - 6.6e-22 77.2 0.0 1.5e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Response_reg PF00072.24 gi|289581710|ref|YP_003480176.1| - 3.3e-10 40.1 0.1 5.7e-10 39.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_34 PF13601.6 gi|289581710|ref|YP_003480176.1| - 0.0002 21.5 0.0 0.00041 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|289581710|ref|YP_003480176.1| - 0.0013 18.7 2.8 0.0024 17.8 0.1 2.4 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|289581710|ref|YP_003480176.1| - 0.006 16.6 0.1 0.03 14.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|289581710|ref|YP_003480176.1| - 0.19 11.7 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2334 PF10096.9 gi|289581711|ref|YP_003480177.1| - 1.9e-21 76.7 0.1 2.5e-21 76.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) TackOD1 PF18551.1 gi|289581711|ref|YP_003480177.1| - 7.2e-05 22.5 3.0 0.00013 21.7 3.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Polysacc_deac_1 PF01522.21 gi|289581711|ref|YP_003480177.1| - 0.00015 21.6 0.0 0.00028 20.8 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Cyt_bd_oxida_I PF01654.17 gi|289581711|ref|YP_003480177.1| - 0.12 11.0 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit I DZR PF12773.7 gi|289581711|ref|YP_003480177.1| - 1.4 9.0 5.1 21 5.2 5.1 2.3 1 1 0 1 1 1 0 Double zinc ribbon Glyco_tranf_2_3 PF13641.6 gi|289581712|ref|YP_003480178.1| - 2.1e-36 125.9 0.2 3.1e-36 125.4 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|289581712|ref|YP_003480178.1| - 1.5e-33 116.0 0.1 2.1e-33 115.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|289581712|ref|YP_003480178.1| - 2.5e-27 96.1 6.2 2.5e-27 96.1 6.2 2.8 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|289581712|ref|YP_003480178.1| - 8.8e-16 57.9 0.1 1.4e-15 57.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|289581712|ref|YP_003480178.1| - 6.8e-13 48.1 5.6 3.7e-10 39.0 0.0 3.0 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_2 PF10111.9 gi|289581712|ref|YP_003480178.1| - 5e-09 36.0 0.1 7.3e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|289581712|ref|YP_003480178.1| - 0.027 15.0 0.1 0.2 12.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family 2 Cellulose_synt PF03552.14 gi|289581712|ref|YP_003480178.1| - 0.29 9.6 3.1 5.8 5.3 0.4 2.2 2 0 0 2 2 2 0 Cellulose synthase FtsJ PF01728.19 gi|289581714|ref|YP_003480180.1| - 2.2e-50 171.2 0.0 2.7e-50 170.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|289581714|ref|YP_003480180.1| - 5.9e-10 39.0 1.2 5.9e-10 39.0 1.2 1.8 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.6 gi|289581714|ref|YP_003480180.1| - 1.5e-05 24.8 0.0 0.00013 21.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289581714|ref|YP_003480180.1| - 0.0035 17.2 0.1 0.1 12.4 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289581714|ref|YP_003480180.1| - 0.0036 18.0 0.1 0.014 16.1 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain DUF3741 PF12552.8 gi|289581714|ref|YP_003480180.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3741) Methyltr_RsmB-F PF01189.17 gi|289581714|ref|YP_003480180.1| - 0.085 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F RHH_1 PF01402.21 gi|289581715|ref|YP_003480181.1| - 0.00052 19.8 0.6 0.0015 18.4 0.1 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|289581715|ref|YP_003480181.1| - 0.01 16.0 0.1 0.01 16.0 0.1 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|289581716|ref|YP_003480182.1| - 1.1e-77 260.5 44.3 9.1e-41 140.0 14.6 3.0 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) CcmH PF03918.14 gi|289581716|ref|YP_003480182.1| - 0.22 10.8 1.1 0.85 8.9 0.0 2.4 2 0 0 2 2 2 0 Cytochrome C biogenesis protein TatC PF00902.18 gi|289581717|ref|YP_003480183.1| - 3.9e-36 124.8 17.3 4.9e-36 124.5 17.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DHHC PF01529.20 gi|289581717|ref|YP_003480183.1| - 3.4 7.8 4.6 2.7 8.1 1.4 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase Apt1 PF10351.9 gi|289581717|ref|YP_003480183.1| - 5.3 5.8 5.2 6.8 5.4 5.2 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain tRNA_Me_trans PF03054.16 gi|289581720|ref|YP_003480186.1| - 5.7e-10 38.5 0.1 5.2e-07 28.8 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|289581720|ref|YP_003480186.1| - 1.6e-09 37.2 0.0 2.8e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|289581720|ref|YP_003480186.1| - 5.7e-09 36.1 0.6 9.5e-09 35.4 0.6 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|289581720|ref|YP_003480186.1| - 1.2e-06 28.2 0.0 5.4e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|289581720|ref|YP_003480186.1| - 0.0012 18.6 0.0 0.005 16.6 0.0 1.9 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.19 gi|289581720|ref|YP_003480186.1| - 0.0072 15.7 0.1 0.012 14.9 0.1 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|289581720|ref|YP_003480186.1| - 0.016 15.2 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueH PF02677.14 gi|289581720|ref|YP_003480186.1| - 0.023 14.8 0.1 0.043 13.9 0.1 1.4 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH MFS_1 PF07690.16 gi|289581721|ref|YP_003480187.1| - 1.5e-46 159.0 47.3 1.5e-46 159.0 47.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|289581721|ref|YP_003480187.1| - 0.01 14.5 30.1 0.043 12.4 30.0 2.0 1 1 0 1 1 1 0 MFS/sugar transport protein MtrB PF05440.12 gi|289581722|ref|YP_003480188.1| - 0.044 14.2 0.6 0.86 10.1 0.0 2.9 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF4079 PF13301.6 gi|289581722|ref|YP_003480188.1| - 0.065 13.4 0.0 2.1 8.5 0.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Metallophos PF00149.28 gi|289581723|ref|YP_003480189.1| - 6e-17 62.8 1.1 7.8e-17 62.4 1.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|289581723|ref|YP_003480189.1| - 3.3e-10 40.4 5.1 1e-09 38.8 5.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|289581723|ref|YP_003480189.1| - 0.056 12.8 0.5 3.9 6.7 0.2 2.3 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DICT PF10069.9 gi|289581724|ref|YP_003480190.1| - 0.015 15.0 0.1 0.015 15.0 0.1 1.0 1 0 0 1 1 1 0 Sensory domain in DIguanylate Cyclases and Two-component system Na_H_antiporter PF03553.14 gi|289581724|ref|YP_003480190.1| - 0.023 13.9 0.2 0.023 13.9 0.2 1.0 1 0 0 1 1 1 0 Na+/H+ antiporter family Vpu PF00558.19 gi|289581724|ref|YP_003480190.1| - 0.16 11.7 1.4 0.16 11.7 1.4 1.1 1 0 0 1 1 1 0 Vpu protein DUF3483 PF11982.8 gi|289581725|ref|YP_003480191.1| - 0.0084 15.8 1.5 0.0095 15.6 1.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3483) DUF2244 PF10003.9 gi|289581725|ref|YP_003480191.1| - 0.17 11.5 2.3 0.2 11.3 2.3 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Trp_oprn_chp PF09534.10 gi|289581725|ref|YP_003480191.1| - 0.36 10.6 6.2 0.44 10.3 6.2 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3040 PF11239.8 gi|289581725|ref|YP_003480191.1| - 0.45 10.8 4.4 0.57 10.5 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Yip1 PF04893.17 gi|289581726|ref|YP_003480192.1| - 6.6e-18 65.0 7.5 9.1e-18 64.6 7.5 1.2 1 0 0 1 1 1 1 Yip1 domain DUF4064 PF13273.6 gi|289581726|ref|YP_003480192.1| - 0.95 9.8 6.6 0.22 11.8 0.7 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF4064) SKG6 PF08693.10 gi|289581726|ref|YP_003480192.1| - 5.7 6.4 11.3 0.059 12.8 1.9 2.5 2 1 0 2 2 2 0 Transmembrane alpha-helix domain Pox_A3L PF05288.11 gi|289581727|ref|YP_003480193.1| - 0.18 11.8 0.1 0.24 11.4 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A3L Protein PAS_4 PF08448.10 gi|289581728|ref|YP_003480194.1| - 4.2e-43 146.1 12.3 9e-14 51.7 0.2 6.5 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.7 gi|289581728|ref|YP_003480194.1| - 7.1e-38 129.0 0.0 6.6e-15 55.3 0.0 5.7 5 0 0 5 5 5 4 PAS domain PAS PF00989.25 gi|289581728|ref|YP_003480194.1| - 1.5e-32 112.0 0.6 4.6e-13 49.2 0.1 5.1 5 0 0 5 5 5 4 PAS fold HATPase_c PF02518.26 gi|289581728|ref|YP_003480194.1| - 2.8e-24 85.8 0.0 8.9e-24 84.2 0.0 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|289581728|ref|YP_003480194.1| - 3.1e-18 65.4 4.2 2.1e-08 34.0 0.2 5.4 5 0 0 5 5 5 3 PAS domain PAS_3 PF08447.12 gi|289581728|ref|YP_003480194.1| - 1.6e-13 50.8 6.3 2.4e-06 27.7 0.1 6.6 6 1 1 7 7 7 2 PAS fold HisKA PF00512.25 gi|289581728|ref|YP_003480194.1| - 6e-11 42.2 0.5 2.4e-10 40.3 0.1 2.3 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|289581728|ref|YP_003480194.1| - 7.1e-11 42.3 2.9 0.28 11.3 0.0 6.0 5 1 0 5 5 5 3 PAS fold PAS_10 PF13596.6 gi|289581728|ref|YP_003480194.1| - 1.6e-07 31.9 0.0 0.43 11.2 0.0 4.8 4 1 0 4 4 4 2 PAS domain HATPase_c_5 PF14501.6 gi|289581728|ref|YP_003480194.1| - 0.00025 20.9 0.0 0.00061 19.7 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.6 gi|289581728|ref|YP_003480194.1| - 0.0086 16.2 0.0 0.14 12.3 0.0 2.7 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|289581728|ref|YP_003480194.1| - 0.0099 15.8 0.3 0.34 10.9 0.3 2.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain Trypan_PARP PF05887.11 gi|289581728|ref|YP_003480194.1| - 0.024 14.6 8.3 0.03 14.3 6.3 2.1 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) ApoLp-III PF07464.11 gi|289581728|ref|YP_003480194.1| - 0.038 14.1 0.4 9.1 6.4 0.1 2.8 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) ZapA PF05164.13 gi|289581728|ref|YP_003480194.1| - 0.11 13.0 0.9 0.97 9.9 0.1 3.1 3 0 0 3 3 3 0 Cell division protein ZapA VPS11_C PF12451.8 gi|289581728|ref|YP_003480194.1| - 0.13 12.5 3.5 1.1 9.6 0.0 3.7 4 0 0 4 4 4 0 Vacuolar protein sorting protein 11 C terminal MutS_V PF00488.21 gi|289581729|ref|YP_003480195.1| - 5.1e-10 39.7 0.1 8.9e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|289581729|ref|YP_003480195.1| - 2.7e-08 34.3 2.4 2.5e-07 31.2 0.3 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|289581729|ref|YP_003480195.1| - 5.2e-05 22.9 1.8 0.0028 17.4 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif AAA_21 PF13304.6 gi|289581729|ref|YP_003480195.1| - 0.0012 18.7 0.0 0.33 10.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IMS_HHH PF11798.8 gi|289581729|ref|YP_003480195.1| - 0.016 15.5 0.0 0.04 14.3 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif AAA_29 PF13555.6 gi|289581729|ref|YP_003480195.1| - 0.059 13.1 0.1 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|289581729|ref|YP_003480195.1| - 0.17 12.3 0.2 0.54 10.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|289581729|ref|YP_003480195.1| - 0.2 11.0 0.0 0.84 8.9 0.0 1.9 2 0 0 2 2 2 0 KaiC Amidohydro_1 PF01979.20 gi|289581730|ref|YP_003480196.1| - 7.8e-43 147.1 0.1 9.9e-43 146.8 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|289581730|ref|YP_003480196.1| - 1.4e-17 64.3 14.7 2.4e-13 50.4 8.4 2.2 1 1 1 2 2 2 2 Amidohydrolase family AAA_16 PF13191.6 gi|289581731|ref|YP_003480197.1| - 3.1e-14 53.7 0.6 1.2e-11 45.3 0.2 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581731|ref|YP_003480197.1| - 7.3e-11 42.5 0.0 1.5e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|289581731|ref|YP_003480197.1| - 7.5e-06 26.4 0.0 2e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|289581731|ref|YP_003480197.1| - 0.00014 21.5 0.0 0.0027 17.3 0.0 2.4 3 0 0 3 3 3 1 P-loop containing dynein motor region Cdc6_C PF09079.11 gi|289581731|ref|YP_003480197.1| - 0.00039 20.4 0.6 0.001 19.0 0.1 2.1 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_35 PF14516.6 gi|289581731|ref|YP_003480197.1| - 0.0013 17.6 0.0 0.024 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.17 gi|289581731|ref|YP_003480197.1| - 0.0014 18.4 0.0 1.8 8.3 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|289581731|ref|YP_003480197.1| - 0.0022 17.9 0.1 0.012 15.6 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|289581731|ref|YP_003480197.1| - 0.0023 17.8 0.0 0.0047 16.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|289581731|ref|YP_003480197.1| - 0.0023 17.7 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|289581731|ref|YP_003480197.1| - 0.0032 17.5 0.1 0.037 14.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|289581731|ref|YP_003480197.1| - 0.0044 16.8 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|289581731|ref|YP_003480197.1| - 0.0044 16.1 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|289581731|ref|YP_003480197.1| - 0.0069 16.6 0.0 0.014 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|289581731|ref|YP_003480197.1| - 0.0082 16.1 0.0 0.027 14.4 0.0 1.9 1 1 0 1 1 1 1 NACHT domain NTPase_1 PF03266.15 gi|289581731|ref|YP_003480197.1| - 0.012 15.5 0.1 0.03 14.2 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|289581731|ref|YP_003480197.1| - 0.016 15.6 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|289581731|ref|YP_003480197.1| - 0.017 15.4 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|289581731|ref|YP_003480197.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|289581731|ref|YP_003480197.1| - 0.026 13.7 0.0 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TIP49_C PF17856.1 gi|289581731|ref|YP_003480197.1| - 0.027 14.6 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_18 PF13238.6 gi|289581731|ref|YP_003480197.1| - 0.032 14.8 0.0 0.093 13.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|289581731|ref|YP_003480197.1| - 0.037 13.9 0.0 0.1 12.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein DUF2075 PF09848.9 gi|289581731|ref|YP_003480197.1| - 0.037 13.3 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|289581731|ref|YP_003480197.1| - 0.044 13.1 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|289581731|ref|YP_003480197.1| - 0.046 13.5 0.0 0.097 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|289581731|ref|YP_003480197.1| - 0.05 12.6 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region RNA_helicase PF00910.22 gi|289581731|ref|YP_003480197.1| - 0.054 13.9 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase MarR_2 PF12802.7 gi|289581731|ref|YP_003480197.1| - 0.1 12.5 0.0 0.55 10.1 0.0 2.3 1 1 0 1 1 1 0 MarR family Rad17 PF03215.15 gi|289581731|ref|YP_003480197.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_32 PF13654.6 gi|289581731|ref|YP_003480197.1| - 0.11 11.2 0.1 2.4 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|289581731|ref|YP_003480197.1| - 0.21 10.8 0.0 0.84 8.8 0.0 2.0 1 1 0 1 1 1 0 KAP family P-loop domain Ribonuc_L-PSP PF01042.21 gi|289581732|ref|YP_003480198.1| - 1.4e-27 96.1 0.1 1.5e-27 96.0 0.1 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP PP2C_2 PF13672.6 gi|289581732|ref|YP_003480198.1| - 0.023 14.3 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C Halo_GVPC PF05465.13 gi|289581733|ref|YP_003480199.1| - 0.018 15.3 2.3 0.018 15.3 2.3 2.2 2 1 1 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF4363 PF14276.6 gi|289581733|ref|YP_003480199.1| - 0.047 13.8 2.4 0.13 12.3 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) Spore_YpjB PF09577.10 gi|289581733|ref|YP_003480199.1| - 0.049 13.4 1.2 0.065 13.0 1.2 1.3 1 1 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) Prominin PF05478.11 gi|289581733|ref|YP_003480199.1| - 0.13 10.2 0.9 0.13 10.2 0.9 1.0 1 0 0 1 1 1 0 Prominin ApoO PF09769.9 gi|289581733|ref|YP_003480199.1| - 0.14 12.1 0.1 0.35 10.8 0.1 1.6 1 1 1 2 2 2 0 Apolipoprotein O acVLRF1 PF18859.1 gi|289581733|ref|YP_003480199.1| - 0.14 12.4 3.1 0.19 12.0 3.1 1.2 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor DUF885 PF05960.11 gi|289581733|ref|YP_003480199.1| - 0.17 11.5 4.6 0.18 11.4 4.6 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) HBM PF16591.5 gi|289581733|ref|YP_003480199.1| - 0.19 11.1 6.7 0.17 11.3 1.2 2.0 1 1 1 2 2 2 0 Helical bimodular sensor domain Arg_decarbox_C PF17944.1 gi|289581733|ref|YP_003480199.1| - 0.24 12.0 2.5 13 6.5 0.2 2.5 2 1 1 3 3 3 0 Arginine decarboxylase C-terminal helical extension DUF883 PF05957.13 gi|289581733|ref|YP_003480199.1| - 0.27 11.9 6.8 5.2 7.7 0.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FUSC PF04632.12 gi|289581733|ref|YP_003480199.1| - 0.62 8.5 2.2 0.6 8.6 2.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family HXXSHH PF07586.11 gi|289581733|ref|YP_003480199.1| - 0.83 9.2 5.7 0.93 9.0 5.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) DUF4397 PF14344.6 gi|289581734|ref|YP_003480200.1| - 2.9e-45 153.9 2.0 2.1e-27 96.3 0.2 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|289581734|ref|YP_003480200.1| - 6.8e-05 22.7 0.0 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 Alginate O-acetyl transferase AlgF DUF4493 PF14900.6 gi|289581734|ref|YP_003480200.1| - 0.024 14.5 0.0 2.8 7.8 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4493) CarboxypepD_reg PF13620.6 gi|289581734|ref|YP_003480200.1| - 0.099 12.9 0.3 11 6.3 0.0 2.6 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF3324 PF11797.8 gi|289581734|ref|YP_003480200.1| - 0.19 11.7 0.0 0.54 10.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function C-terminal (DUF3324) PQQ_2 PF13360.6 gi|289581735|ref|YP_003480201.1| - 6.1e-29 101.3 15.8 1.4e-15 57.5 4.8 3.2 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289581735|ref|YP_003480201.1| - 5.2e-23 80.9 28.1 2.3e-05 24.7 0.5 7.9 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|289581735|ref|YP_003480201.1| - 7.4e-16 57.2 9.1 0.012 15.5 0.1 7.6 7 0 0 7 7 7 4 PQQ enzyme repeat WW PF00397.26 gi|289581735|ref|YP_003480201.1| - 0.12 12.5 2.8 3.9 7.6 0.1 3.1 3 0 0 3 3 3 0 WW domain UvrB_inter PF17757.1 gi|289581736|ref|YP_003480202.1| - 3.3e-31 107.3 0.1 1.5e-30 105.2 0.0 2.2 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|289581736|ref|YP_003480202.1| - 6.7e-19 67.5 0.3 1.3e-18 66.5 0.3 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|289581736|ref|YP_003480202.1| - 8e-17 61.6 0.1 2.1e-16 60.2 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|289581736|ref|YP_003480202.1| - 3.4e-10 39.3 5.6 2.5e-09 36.6 5.6 2.6 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|289581736|ref|YP_003480202.1| - 5.9e-09 36.2 0.0 1.1e-07 32.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|289581736|ref|YP_003480202.1| - 0.001 18.9 0.0 0.015 15.0 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|289581736|ref|YP_003480202.1| - 0.024 15.0 0.1 8.6 6.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|289581736|ref|YP_003480202.1| - 0.025 14.3 0.0 0.42 10.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain UB2H PF14814.6 gi|289581736|ref|YP_003480202.1| - 0.05 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|289581736|ref|YP_003480202.1| - 0.27 11.3 0.1 0.27 11.3 0.1 2.6 4 0 0 4 4 4 0 Helicase HerA, central domain Spore_III_AF PF09581.10 gi|289581736|ref|YP_003480202.1| - 0.37 10.8 1.5 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) Acetyltransf_10 PF13673.7 gi|289581739|ref|YP_003480205.1| - 5.4e-14 52.2 0.0 6.6e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289581739|ref|YP_003480205.1| - 5.2e-12 46.0 0.0 7.7e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289581739|ref|YP_003480205.1| - 1.5e-11 44.6 0.0 1.9e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|289581739|ref|YP_003480205.1| - 1.1e-07 31.7 0.0 1.6e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|289581739|ref|YP_003480205.1| - 2.6e-06 28.2 0.1 3.2e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289581739|ref|YP_003480205.1| - 1.8e-05 25.0 0.0 2.3e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|289581739|ref|YP_003480205.1| - 0.00072 19.7 2.1 0.0011 19.1 2.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289581739|ref|YP_003480205.1| - 0.00092 19.3 0.5 0.03 14.4 0.5 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_16 PF05301.11 gi|289581739|ref|YP_003480205.1| - 0.036 13.8 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Acetyltransf_13 PF13880.6 gi|289581739|ref|YP_003480205.1| - 0.081 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|289581739|ref|YP_003480205.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ SUI1 PF01253.22 gi|289581740|ref|YP_003480206.1| - 1.5e-16 60.7 0.0 1.8e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|289581740|ref|YP_003480206.1| - 0.11 12.8 0.0 0.13 12.6 0.0 1.3 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) EptA_B_N PF08019.12 gi|289581742|ref|YP_003480208.1| - 0.077 12.9 0.2 0.077 12.9 0.2 2.5 1 1 0 2 2 2 0 Phosphoethanolamine transferase EptA/EptB UvrC_HhH_N PF08459.11 gi|289581743|ref|YP_003480209.1| - 3.1e-41 140.8 0.0 5.4e-41 140.1 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|289581743|ref|YP_003480209.1| - 3.3e-12 46.8 0.0 1.3e-11 44.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|289581743|ref|YP_003480209.1| - 8.2e-12 44.4 0.3 4.5e-08 32.6 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|289581743|ref|YP_003480209.1| - 1.2e-09 38.1 0.0 3.8e-09 36.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|289581743|ref|YP_003480209.1| - 4.8e-09 35.7 0.5 1.2e-08 34.5 0.5 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|289581743|ref|YP_003480209.1| - 3e-08 33.8 0.0 5.5e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|289581743|ref|YP_003480209.1| - 0.0008 20.0 0.0 0.14 12.8 0.0 2.9 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|289581743|ref|YP_003480209.1| - 0.0037 17.5 0.0 0.17 12.2 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif CsgA PF17334.2 gi|289581743|ref|YP_003480209.1| - 0.03 15.1 0.0 0.068 13.9 0.0 1.6 1 0 0 1 1 1 0 Minor curli fiber component A HHH_8 PF14716.6 gi|289581743|ref|YP_003480209.1| - 0.044 14.1 0.0 4.7 7.6 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain ABC_tran PF00005.27 gi|289581746|ref|YP_003480212.1| - 9.8e-29 100.6 0.0 7.9e-28 97.7 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289581746|ref|YP_003480212.1| - 2.9e-11 43.8 0.0 3.1e-07 30.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581746|ref|YP_003480212.1| - 7.9e-08 32.9 0.1 2.3e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|289581746|ref|YP_003480212.1| - 7.1e-06 25.9 0.1 1.7e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|289581746|ref|YP_003480212.1| - 0.00096 18.6 0.0 0.22 10.9 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289581746|ref|YP_003480212.1| - 0.0072 16.8 0.1 0.022 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|289581746|ref|YP_003480212.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|289581746|ref|YP_003480212.1| - 0.026 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|289581746|ref|YP_003480212.1| - 0.039 13.6 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|289581746|ref|YP_003480212.1| - 0.057 13.8 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane_2 PF12679.7 gi|289581747|ref|YP_003480213.1| - 7.4e-62 209.2 20.3 8.7e-62 209.0 20.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289581747|ref|YP_003480213.1| - 2.8e-09 36.6 21.6 2.8e-09 36.6 21.6 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289581747|ref|YP_003480213.1| - 2.3e-07 31.0 12.1 2.3e-07 31.0 12.1 2.8 1 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|289581747|ref|YP_003480213.1| - 1.9e-06 27.4 12.0 1.9e-06 27.4 12.0 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|289581747|ref|YP_003480213.1| - 3.9e-06 26.6 15.9 3.9e-06 26.6 15.9 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein Ndc1_Nup PF09531.10 gi|289581747|ref|YP_003480213.1| - 4 6.0 5.4 7.1 5.2 5.4 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Putative_PNPOx PF01243.20 gi|289581748|ref|YP_003480214.1| - 8.4e-14 51.5 0.1 1e-13 51.2 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Autoind_bind PF03472.15 gi|289581748|ref|YP_003480214.1| - 0.014 14.9 0.2 0.018 14.5 0.2 1.1 1 0 0 1 1 1 0 Autoinducer binding domain Pyrid_ox_like PF16242.5 gi|289581748|ref|YP_003480214.1| - 0.035 13.7 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like Usp PF00582.26 gi|289581749|ref|YP_003480215.1| - 8.4e-29 100.9 0.4 9.5e-29 100.7 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|289581749|ref|YP_003480215.1| - 0.024 14.7 0.1 0.029 14.4 0.1 1.2 1 0 0 1 1 1 0 DNA photolyase ETF PF01012.21 gi|289581749|ref|YP_003480215.1| - 0.025 14.5 4.6 0.082 12.8 4.6 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DNA_ligase_aden PF01653.18 gi|289581750|ref|YP_003480216.1| - 9.5e-107 356.8 0.1 1.3e-106 356.3 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|289581750|ref|YP_003480216.1| - 7.9e-29 99.4 3.0 1.7e-28 98.3 3.0 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|289581750|ref|YP_003480216.1| - 2.8e-21 75.4 1.1 1.7e-18 66.4 0.1 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|289581750|ref|YP_003480216.1| - 1.3e-15 57.7 0.1 1.9e-06 28.4 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|289581750|ref|YP_003480216.1| - 4e-13 49.6 0.0 8.4e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|289581750|ref|YP_003480216.1| - 1.7e-05 24.4 0.5 1.3 9.0 0.0 4.3 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 gi|289581750|ref|YP_003480216.1| - 0.00011 22.1 1.3 0.00011 22.1 1.3 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.20 gi|289581750|ref|YP_003480216.1| - 0.0018 18.8 0.0 0.026 15.1 0.0 2.8 2 2 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold PTCB-BRCT PF12738.7 gi|289581750|ref|YP_003480216.1| - 0.098 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 twin BRCT domain Fer2 PF00111.27 gi|289581751|ref|YP_003480217.1| - 1.5e-10 40.9 1.1 6.3e-10 38.9 1.1 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain RIO1 PF01163.22 gi|289581752|ref|YP_003480218.1| - 1e-60 204.6 0.2 5.7e-60 202.1 0.0 1.9 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|289581752|ref|YP_003480218.1| - 4.8e-10 39.8 2.3 6.3e-05 23.0 0.0 2.8 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|289581752|ref|YP_003480218.1| - 2.8e-05 23.6 0.7 0.00029 20.2 0.1 2.4 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|289581752|ref|YP_003480218.1| - 0.00021 20.8 0.0 0.0014 18.0 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|289581752|ref|YP_003480218.1| - 0.0013 17.6 0.0 0.002 17.0 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Kinase-PolyVal PF18762.1 gi|289581752|ref|YP_003480218.1| - 0.1 12.5 0.1 3.9 7.4 0.0 2.5 2 0 0 2 2 2 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins CENP-C_mid PF15620.6 gi|289581752|ref|YP_003480218.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.1 1 0 0 1 1 1 0 Centromere assembly component CENP-C middle DNMT3B-binding region tRNA-synt_1b PF00579.25 gi|289581754|ref|YP_003480220.1| - 1.3e-18 67.4 0.0 4e-18 65.8 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF772 PF05598.11 gi|289581755|ref|YP_003480221.1| - 2.7e-05 24.1 0.1 4.5e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_IS1595 PF12762.7 gi|289581757|ref|YP_003480223.1| - 6.2e-22 78.3 0.0 9.4e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|289581757|ref|YP_003480223.1| - 1.3e-10 41.0 0.5 2.4e-10 40.2 0.5 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|289581757|ref|YP_003480223.1| - 4.8e-05 23.0 2.6 0.00011 21.9 2.6 1.6 1 0 0 1 1 1 1 InsA N-terminal domain zf-C4_Topoisom PF01396.19 gi|289581757|ref|YP_003480223.1| - 0.0012 18.6 1.9 0.0024 17.6 1.9 1.5 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger DUF2089 PF09862.9 gi|289581757|ref|YP_003480223.1| - 0.019 15.0 0.2 0.048 13.7 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) TackOD1 PF18551.1 gi|289581757|ref|YP_003480223.1| - 0.02 14.6 0.3 0.033 13.9 0.3 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|289581757|ref|YP_003480223.1| - 0.052 13.5 0.5 0.098 12.7 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|289581757|ref|YP_003480223.1| - 0.1 12.7 0.5 17 5.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|289581757|ref|YP_003480223.1| - 0.13 12.8 2.1 0.36 11.4 2.1 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-Dof PF02701.15 gi|289581757|ref|YP_003480223.1| - 0.21 11.8 4.2 0.48 10.6 4.2 1.6 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|289581757|ref|YP_003480223.1| - 0.67 10.7 6.9 2.3 9.0 0.4 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Metallophos_2 PF12850.7 gi|289581758|ref|YP_003480224.1| - 7.3e-33 114.1 0.4 8.2e-33 113.9 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289581758|ref|YP_003480224.1| - 6.9e-06 26.7 3.9 3.1e-05 24.6 3.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase KH_1 PF00013.29 gi|289581759|ref|YP_003480225.1| - 2.1e-13 49.9 0.8 2.4e-07 30.5 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|289581759|ref|YP_003480225.1| - 1.8e-05 24.5 1.9 0.0044 16.8 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|289581759|ref|YP_003480225.1| - 7.9e-05 22.7 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|289581759|ref|YP_003480225.1| - 0.053 13.4 4.7 1.9 8.4 0.4 3.0 2 1 1 3 3 3 0 KH domain Cpn60_TCP1 PF00118.24 gi|289581760|ref|YP_003480226.1| - 5.7e-176 585.9 15.3 6.5e-176 585.7 15.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.16 gi|289581760|ref|YP_003480226.1| - 0.077 13.6 1.0 7.9 7.2 0.3 2.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II P-II PF00543.22 gi|289581760|ref|YP_003480226.1| - 0.13 12.9 3.6 6.4 7.5 0.1 3.7 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II DDE_Tnp_1 PF01609.21 gi|289581761|ref|YP_003480227.1| - 0.032 13.9 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain Abhydrolase_6 PF12697.7 gi|289581762|ref|YP_003480228.1| - 5e-20 73.0 2.8 6.2e-20 72.7 2.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|289581762|ref|YP_003480228.1| - 2.5e-07 30.6 0.0 0.0012 18.5 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289581762|ref|YP_003480228.1| - 0.0025 17.1 0.0 0.012 14.8 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|289581762|ref|YP_003480228.1| - 0.0041 17.3 0.0 0.017 15.3 0.0 1.9 1 1 1 2 2 2 1 Thioesterase domain DLH PF01738.18 gi|289581762|ref|YP_003480228.1| - 0.083 12.4 0.0 7 6.1 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_8 PF06259.12 gi|289581762|ref|YP_003480228.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase HTH_10 PF04967.12 gi|289581763|ref|YP_003480229.1| - 4.8e-19 67.9 0.1 1e-18 66.9 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|289581763|ref|YP_003480229.1| - 5.8e-05 22.5 0.1 0.00016 21.1 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 BAT PF15915.5 gi|289581763|ref|YP_003480229.1| - 0.0041 17.0 0.1 0.0073 16.2 0.1 1.4 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|289581763|ref|YP_003480229.1| - 0.043 13.7 0.4 0.11 12.4 0.4 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|289581763|ref|YP_003480229.1| - 0.061 13.5 0.1 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Tho2 PF11262.8 gi|289581764|ref|YP_003480230.1| - 0.014 14.6 0.1 0.015 14.5 0.1 1.0 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Rota_NSP3 PF01665.16 gi|289581764|ref|YP_003480230.1| - 0.075 12.2 0.1 0.075 12.2 0.1 1.0 1 0 0 1 1 1 0 Rotavirus non-structural protein NSP3 OCD_Mu_crystall PF02423.15 gi|289581769|ref|YP_003480235.1| - 3.4e-83 279.2 2.4 1.6e-74 250.7 1.8 2.0 1 1 1 2 2 2 2 Ornithine cyclodeaminase/mu-crystallin family DUF2071 PF09844.9 gi|289581770|ref|YP_003480236.1| - 1.5e-69 233.9 0.0 1.7e-69 233.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|289581770|ref|YP_003480236.1| - 3.8e-06 26.7 0.0 5.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) FGFR3_TM PF18123.1 gi|289581772|ref|YP_003480238.1| - 0.82 9.2 5.2 1.5 8.4 5.2 1.5 1 1 0 1 1 1 0 Fibroblast growth factor receptor 3 transmembrane domain 4HBT PF03061.22 gi|289581773|ref|YP_003480239.1| - 1.9e-14 53.8 0.0 3.3e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|289581773|ref|YP_003480239.1| - 6.3e-06 26.3 0.0 1.5e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) DUF4385 PF14328.6 gi|289581774|ref|YP_003480240.1| - 4e-61 205.4 5.3 4.7e-61 205.1 5.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) Serpin PF00079.20 gi|289581775|ref|YP_003480241.1| - 2.4e-112 376.0 0.0 2.8e-112 375.7 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) B_solenoid_ydck PF18836.1 gi|289581775|ref|YP_003480241.1| - 7.7 6.6 5.3 43 4.2 0.0 3.1 3 0 0 3 3 3 0 Beta solenoid repeat from YDCK Peptidase_M23 PF01551.22 gi|289581776|ref|YP_003480242.1| - 0.005 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 OB_aCoA_assoc PF01796.17 gi|289581776|ref|YP_003480242.1| - 0.032 14.2 1.7 0.057 13.4 0.3 2.2 2 0 0 2 2 2 0 DUF35 OB-fold domain, acyl-CoA-associated TAT_signal PF10518.9 gi|289581779|ref|YP_003480245.1| - 0.057 13.3 0.5 0.12 12.3 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5423 PF17461.2 gi|289581779|ref|YP_003480245.1| - 7.7 5.3 7.1 11 4.8 7.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5423) Thiolase_N PF00108.23 gi|289581781|ref|YP_003480247.1| - 1.4e-76 257.3 1.4 2e-76 256.8 1.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289581781|ref|YP_003480247.1| - 3e-42 143.1 0.1 1.5e-41 140.9 0.1 2.1 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289581781|ref|YP_003480247.1| - 3.8e-06 26.7 0.6 8.5e-06 25.5 0.6 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|289581781|ref|YP_003480247.1| - 0.58 10.0 6.3 0.84 9.5 0.3 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PLDc_N PF13396.6 gi|289581782|ref|YP_003480248.1| - 0.0023 17.8 2.6 0.0058 16.5 2.6 1.6 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal AFOR_C PF01314.18 gi|289581783|ref|YP_003480249.1| - 3e-75 253.6 0.0 5.3e-75 252.8 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|289581783|ref|YP_003480249.1| - 1.3e-62 211.2 0.0 2.6e-62 210.2 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HHH_2 PF12826.7 gi|289581783|ref|YP_003480249.1| - 0.043 13.9 1.2 1.2 9.3 0.1 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif AMP-binding PF00501.28 gi|289581785|ref|YP_003480251.1| - 2.6e-97 326.1 0.0 3.1e-97 325.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Cupin_2 PF07883.11 gi|289581786|ref|YP_003480252.1| - 4.4e-18 64.7 0.5 5.8e-18 64.4 0.5 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|289581786|ref|YP_003480252.1| - 6e-07 29.2 0.0 9e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|289581786|ref|YP_003480252.1| - 1.4e-06 28.3 0.1 1.7e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|289581786|ref|YP_003480252.1| - 0.00017 21.5 0.0 0.00021 21.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase ARD PF03079.14 gi|289581786|ref|YP_003480252.1| - 0.00096 19.4 0.1 0.0014 18.8 0.1 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_3 PF05899.12 gi|289581786|ref|YP_003480252.1| - 0.0011 18.6 0.1 0.0016 18.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|289581786|ref|YP_003480252.1| - 0.0073 16.5 0.0 0.0092 16.2 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like EutQ PF06249.12 gi|289581786|ref|YP_003480252.1| - 0.099 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF4437 PF14499.6 gi|289581786|ref|YP_003480252.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) Cupin_7 PF12973.7 gi|289581786|ref|YP_003480252.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Carboxyl_trans PF01039.22 gi|289581787|ref|YP_003480253.1| - 5.7e-128 427.6 0.0 8.1e-128 427.1 0.0 1.2 1 0 0 1 1 1 1 Carboxyl transferase domain CPSase_L_D2 PF02786.17 gi|289581788|ref|YP_003480254.1| - 4.1e-78 261.7 0.1 6.6e-78 261.0 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|289581788|ref|YP_003480254.1| - 2e-44 150.6 0.1 7.6e-44 148.8 0.0 2.1 2 0 0 2 2 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|289581788|ref|YP_003480254.1| - 7.2e-36 122.6 0.0 1.9e-35 121.2 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|289581788|ref|YP_003480254.1| - 2.3e-18 65.8 4.5 8.4e-18 64.0 3.8 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 gi|289581788|ref|YP_003480254.1| - 4.1e-11 42.8 0.0 8.1e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|289581788|ref|YP_003480254.1| - 2.1e-08 33.9 0.1 5e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 gi|289581788|ref|YP_003480254.1| - 9.3e-06 25.4 2.8 0.047 13.5 0.0 3.2 3 1 1 4 4 4 2 Biotin-lipoyl like ATP-grasp_3 PF02655.14 gi|289581788|ref|YP_003480254.1| - 1.3e-05 25.3 0.0 2.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|289581788|ref|YP_003480254.1| - 4.1e-05 23.4 0.0 7.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.6 gi|289581788|ref|YP_003480254.1| - 0.00026 21.6 0.6 1.4 9.6 0.2 3.1 3 0 0 3 3 2 2 HlyD family secretion protein PASTA PF03793.19 gi|289581788|ref|YP_003480254.1| - 0.013 15.3 2.1 3.9 7.4 0.1 2.9 1 1 1 2 2 2 0 PASTA domain ATPgrasp_ST PF14397.6 gi|289581788|ref|YP_003480254.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp HlyD_D23 PF16576.5 gi|289581788|ref|YP_003480254.1| - 0.015 14.5 0.4 4.5 6.4 0.1 2.4 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|289581788|ref|YP_003480254.1| - 0.026 14.4 0.8 0.066 13.1 0.8 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein ATP-grasp_5 PF13549.6 gi|289581788|ref|YP_003480254.1| - 0.055 12.9 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|289581788|ref|YP_003480254.1| - 0.074 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon RnfC_N PF13375.6 gi|289581788|ref|YP_003480254.1| - 0.082 12.9 0.3 1.3 9.0 0.4 2.7 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain CoA_binding_2 PF13380.6 gi|289581788|ref|YP_003480254.1| - 0.32 11.5 1.4 24 5.5 0.1 2.4 1 1 1 2 2 2 0 CoA binding domain Acyl-CoA_dh_1 PF00441.24 gi|289581789|ref|YP_003480255.1| - 1.3e-29 103.3 0.3 2.2e-29 102.6 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289581789|ref|YP_003480255.1| - 2.6e-23 82.8 2.7 5.4e-23 81.8 2.7 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289581789|ref|YP_003480255.1| - 1.4e-21 76.5 0.0 2.9e-21 75.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289581789|ref|YP_003480255.1| - 4.5e-15 56.1 0.2 7.8e-15 55.3 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RseC_MucC PF04246.12 gi|289581790|ref|YP_003480256.1| - 0.27 11.2 3.8 0.34 10.9 3.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Tail_VII PF17091.5 gi|289581790|ref|YP_003480256.1| - 0.79 9.7 0.1 0.79 9.7 0.1 2.3 2 0 0 2 2 2 0 Inovirus G7P protein UbiD PF01977.16 gi|289581791|ref|YP_003480257.1| - 3.4e-19 69.0 0.0 4.5e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|289581792|ref|YP_003480258.1| - 2.3e-98 329.8 0.0 3e-98 329.4 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TetR_C_11 PF16859.5 gi|289581793|ref|YP_003480259.1| - 0.052 13.9 1.0 0.052 13.9 1.0 2.5 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Phage_TAC_7 PF10109.9 gi|289581793|ref|YP_003480259.1| - 0.076 13.1 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 CSD PF00313.22 gi|289581794|ref|YP_003480260.1| - 5.3e-20 71.1 0.0 5.7e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|289581794|ref|YP_003480260.1| - 0.05 13.3 2.5 0.063 13.0 2.5 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|289581794|ref|YP_003480260.1| - 0.17 11.9 0.4 0.21 11.5 0.4 1.4 1 1 0 1 1 1 0 S1-like Pro_CA PF00484.19 gi|289581796|ref|YP_003480262.1| - 6.8e-26 91.4 0.0 9.2e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase ADH_N_2 PF16884.5 gi|289581797|ref|YP_003480263.1| - 6.7e-41 138.6 0.1 1.2e-40 137.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|289581797|ref|YP_003480263.1| - 2.1e-21 76.2 0.0 3.2e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|289581797|ref|YP_003480263.1| - 2.5e-11 44.8 0.0 1e-10 42.8 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase SpoVAD PF07451.11 gi|289581797|ref|YP_003480263.1| - 0.18 10.5 0.1 0.36 9.5 0.1 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) DUF4870 PF09685.10 gi|289581798|ref|YP_003480264.1| - 9.8e-23 80.4 5.3 1.2e-22 80.1 5.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) zinc_ribbon_2 PF13240.6 gi|289581798|ref|YP_003480264.1| - 2e-07 30.5 0.9 3.3e-07 29.8 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289581798|ref|YP_003480264.1| - 6.3e-07 28.6 1.5 1.1e-06 27.9 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|289581798|ref|YP_003480264.1| - 0.00013 22.0 0.5 0.00021 21.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|289581798|ref|YP_003480264.1| - 0.0083 16.8 1.5 0.013 16.2 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon family Nudix_N_2 PF14803.6 gi|289581798|ref|YP_003480264.1| - 0.018 15.0 1.8 0.36 10.8 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal HscB_4_cys PF18256.1 gi|289581798|ref|YP_003480264.1| - 0.27 11.1 5.3 0.98 9.3 5.3 2.0 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif TF_Zn_Ribbon PF08271.12 gi|289581798|ref|YP_003480264.1| - 0.5 9.9 4.3 4 7.0 0.3 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DHHC PF01529.20 gi|289581798|ref|YP_003480264.1| - 0.79 9.8 5.8 3.2 7.9 0.1 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase PknG_rubred PF16919.5 gi|289581798|ref|YP_003480264.1| - 0.83 9.8 9.0 0.18 11.9 1.5 2.1 1 1 1 2 2 2 0 Protein kinase G rubredoxin domain SdpI PF13630.6 gi|289581798|ref|YP_003480264.1| - 2.3 8.4 6.7 6.6 6.9 6.7 1.8 1 1 0 1 1 1 0 SdpI/YhfL protein family ABC2_membrane PF01061.24 gi|289581799|ref|YP_003480265.1| - 3e-31 108.5 14.4 3e-31 108.5 14.4 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|289581799|ref|YP_003480265.1| - 0.075 12.1 20.9 0.099 11.7 20.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289581800|ref|YP_003480266.1| - 3.7e-31 108.5 0.0 9.4e-31 107.1 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289581800|ref|YP_003480266.1| - 2.7e-14 53.7 2.5 2.8e-09 37.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581800|ref|YP_003480266.1| - 9.1e-09 35.9 0.0 3.1e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|289581800|ref|YP_003480266.1| - 0.00063 19.5 0.0 0.0017 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289581800|ref|YP_003480266.1| - 0.013 15.0 0.1 0.23 10.9 0.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289581800|ref|YP_003480266.1| - 0.015 15.9 1.6 0.023 15.2 0.3 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|289581800|ref|YP_003480266.1| - 0.053 13.2 0.0 3.7 7.2 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|289581800|ref|YP_003480266.1| - 0.057 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 gi|289581800|ref|YP_003480266.1| - 0.059 12.3 0.0 0.13 11.2 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|289581800|ref|YP_003480266.1| - 0.076 13.1 0.4 0.23 11.5 0.1 2.0 2 1 1 3 3 3 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|289581800|ref|YP_003480266.1| - 0.088 12.6 0.1 0.3 10.8 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|289581800|ref|YP_003480266.1| - 0.092 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|289581800|ref|YP_003480266.1| - 0.1 11.5 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF4746 PF15928.5 gi|289581800|ref|YP_003480266.1| - 0.11 11.9 0.2 0.16 11.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) AAA_24 PF13479.6 gi|289581800|ref|YP_003480266.1| - 0.11 12.2 0.1 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|289581800|ref|YP_003480266.1| - 0.11 13.0 0.1 0.63 10.6 0.1 2.2 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|289581800|ref|YP_003480266.1| - 0.13 12.1 0.1 0.93 9.4 0.0 2.2 2 1 0 2 2 2 0 NTPase SRP54 PF00448.22 gi|289581800|ref|YP_003480266.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 gi|289581800|ref|YP_003480266.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|289581800|ref|YP_003480266.1| - 0.22 11.8 2.0 8.2 6.7 0.0 3.5 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit FlbD PF06289.11 gi|289581800|ref|YP_003480266.1| - 0.3 10.7 1.0 0.73 9.5 0.3 1.9 2 0 0 2 2 2 0 Flagellar and Swarming motility proteins CBS PF00571.28 gi|289581801|ref|YP_003480267.1| - 1.4e-21 76.6 0.8 4.1e-10 39.9 0.0 3.3 2 1 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|289581801|ref|YP_003480267.1| - 1.4e-15 57.3 9.3 9.1e-10 38.2 0.2 3.2 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|289581801|ref|YP_003480267.1| - 9.1e-06 25.4 2.5 9.1e-06 25.4 2.5 2.0 1 1 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|289581801|ref|YP_003480267.1| - 0.00013 22.2 2.2 0.00013 22.2 2.2 2.2 3 0 0 3 3 3 1 Putative zincin peptidase Ribosomal_L16 PF00252.18 gi|289581802|ref|YP_003480268.1| - 3.3e-31 108.0 0.0 3.8e-31 107.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Serglycin PF04360.12 gi|289581803|ref|YP_003480269.1| - 0.024 14.6 0.1 0.035 14.0 0.1 1.2 1 0 0 1 1 1 0 Serglycin AF-4 PF05110.13 gi|289581803|ref|YP_003480269.1| - 0.32 9.0 7.4 0.39 8.7 7.4 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein RimK PF08443.11 gi|289581804|ref|YP_003480270.1| - 2.2e-20 73.0 0.0 3.1e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|289581804|ref|YP_003480270.1| - 5.4e-11 42.2 0.0 7.7e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|289581804|ref|YP_003480270.1| - 4.5e-09 36.6 0.0 7.2e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|289581804|ref|YP_003480270.1| - 8e-09 35.2 0.0 9.6e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|289581804|ref|YP_003480270.1| - 0.0001 21.9 0.0 0.00026 20.6 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|289581804|ref|YP_003480270.1| - 0.00066 18.9 0.0 0.068 12.3 0.0 2.1 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family ATP-grasp PF02222.22 gi|289581804|ref|YP_003480270.1| - 0.00079 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_TupA PF14305.6 gi|289581804|ref|YP_003480270.1| - 0.005 16.6 0.0 0.013 15.3 0.0 1.6 2 0 0 2 2 2 1 TupA-like ATPgrasp CPSase_L_D2 PF02786.17 gi|289581804|ref|YP_003480270.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.4 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ArsA_HSP20 PF17886.1 gi|289581805|ref|YP_003480271.1| - 6.2e-21 73.7 0.0 8.8e-21 73.2 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|289581805|ref|YP_003480271.1| - 2.2e-10 40.6 0.1 4.5e-09 36.4 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|289581805|ref|YP_003480271.1| - 1.1e-08 35.3 0.7 1.4e-08 35.0 0.7 1.1 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|289581805|ref|YP_003480271.1| - 0.007 16.8 0.0 0.0088 16.4 0.0 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain Gp_dh_C PF02800.20 gi|289581806|ref|YP_003480272.1| - 1.1e-17 64.1 0.0 1.7e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|289581806|ref|YP_003480272.1| - 9.3e-09 35.5 0.1 3e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|289581806|ref|YP_003480272.1| - 1.2e-05 25.5 0.1 5.8e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|289581806|ref|YP_003480272.1| - 0.00018 22.1 0.1 0.00038 21.1 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289581806|ref|YP_003480272.1| - 0.0005 19.5 0.1 0.018 14.4 0.1 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289581806|ref|YP_003480272.1| - 0.0089 16.3 0.2 0.021 15.1 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dhC PF02774.18 gi|289581806|ref|YP_003480272.1| - 0.013 15.5 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|289581806|ref|YP_003480272.1| - 0.063 14.1 0.2 0.16 12.8 0.2 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Peptidase_M29 PF02073.15 gi|289581807|ref|YP_003480273.1| - 3.8e-14 52.3 0.0 1.5e-12 47.0 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) DraK_HK_N PF18092.1 gi|289581809|ref|YP_003480275.1| - 0.0018 18.7 4.5 0.17 12.3 0.4 3.2 2 2 2 4 4 4 2 DraK Histidine Kinase N-terminal domain HalOD2 PF18547.1 gi|289581809|ref|YP_003480275.1| - 0.057 13.3 1.3 0.15 12.0 1.3 1.6 1 1 0 1 1 1 0 Halobacterial output domain 2 zinc_ribbon_4 PF13717.6 gi|289581809|ref|YP_003480275.1| - 0.12 12.3 2.8 0.48 10.4 2.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289581809|ref|YP_003480275.1| - 0.14 11.6 0.1 0.14 11.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|289581809|ref|YP_003480275.1| - 0.14 11.9 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289581809|ref|YP_003480275.1| - 0.21 11.7 2.1 10 6.3 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain PCMT PF01135.19 gi|289581810|ref|YP_003480276.1| - 1.7e-60 204.4 0.0 1.9e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|289581810|ref|YP_003480276.1| - 1.3e-07 32.2 0.0 2.6e-07 31.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289581810|ref|YP_003480276.1| - 2.6e-06 27.3 0.0 3.3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|289581810|ref|YP_003480276.1| - 9.7e-05 21.8 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|289581810|ref|YP_003480276.1| - 0.00016 21.5 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.14 gi|289581810|ref|YP_003480276.1| - 0.00081 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|289581810|ref|YP_003480276.1| - 0.0013 17.9 0.0 0.0018 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|289581810|ref|YP_003480276.1| - 0.0017 18.2 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289581810|ref|YP_003480276.1| - 0.01 16.5 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|289581810|ref|YP_003480276.1| - 0.012 14.8 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin DOT1 PF08123.13 gi|289581810|ref|YP_003480276.1| - 0.044 13.3 0.0 0.064 12.8 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|289581810|ref|YP_003480276.1| - 0.054 14.2 0.0 0.1 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|289581810|ref|YP_003480276.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.19 gi|289581811|ref|YP_003480277.1| - 2.5e-33 115.6 0.0 3.3e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|289581811|ref|YP_003480277.1| - 3.5e-07 30.2 0.0 4.3e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289581811|ref|YP_003480277.1| - 8.1e-06 26.5 0.0 1.4e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|289581811|ref|YP_003480277.1| - 0.00041 19.9 0.0 0.00066 19.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FAD_binding_2 PF00890.24 gi|289581811|ref|YP_003480277.1| - 0.0056 15.8 0.2 0.0092 15.1 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Methyltransf_12 PF08242.12 gi|289581811|ref|YP_003480277.1| - 0.019 15.7 0.0 0.034 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain BAT PF15915.5 gi|289581812|ref|YP_003480278.1| - 8.4e-37 126.5 13.8 8.4e-37 126.5 13.8 3.4 2 1 1 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|289581812|ref|YP_003480278.1| - 1.5e-21 77.2 6.5 6.8e-15 55.6 0.5 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|289581812|ref|YP_003480278.1| - 3.2e-20 71.7 0.1 1.3e-19 69.7 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain Response_reg PF00072.24 gi|289581812|ref|YP_003480278.1| - 3.5e-19 69.0 0.0 1.1e-18 67.4 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|289581812|ref|YP_003480278.1| - 1.4e-10 41.6 0.8 9.9e-06 25.9 0.0 2.8 2 1 0 2 2 2 2 GAF domain GAF PF01590.26 gi|289581812|ref|YP_003480278.1| - 6e-06 26.9 0.4 8.9e-05 23.1 0.0 2.5 2 1 0 2 2 2 1 GAF domain FTA4 PF13093.6 gi|289581812|ref|YP_003480278.1| - 0.12 12.3 2.8 0.33 10.8 0.1 2.4 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 RasGAP_C PF03836.15 gi|289581812|ref|YP_003480278.1| - 0.8 9.9 5.0 0.62 10.2 0.7 2.4 2 0 0 2 2 2 0 RasGAP C-terminus PDDEXK_5 PF11645.8 gi|289581813|ref|YP_003480279.1| - 1.4e-41 141.7 0.0 1.6e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease TAXi_N PF14543.6 gi|289581813|ref|YP_003480279.1| - 0.044 14.0 0.1 0.053 13.7 0.1 1.3 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal RNA_pol_Rpb5_C PF01191.19 gi|289581814|ref|YP_003480280.1| - 1.9e-24 85.3 0.3 2.2e-24 85.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|289581814|ref|YP_003480280.1| - 0.021 15.1 1.1 5.2 7.4 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3006) RNA_pol_Rpb2_1 PF04563.15 gi|289581815|ref|YP_003480281.1| - 1.8e-50 171.3 0.1 2.2e-50 171.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|289581815|ref|YP_003480281.1| - 6.8e-26 91.1 0.1 1e-25 90.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|289581815|ref|YP_003480281.1| - 9.6e-24 83.4 0.0 1.8e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|289581816|ref|YP_003480282.1| - 8.4e-127 423.4 0.0 1.1e-126 423.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|289581816|ref|YP_003480282.1| - 2.2e-29 101.7 0.3 4.4e-29 100.7 0.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|289581816|ref|YP_003480282.1| - 9.7e-21 73.8 0.3 1.8e-20 72.9 0.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|289581816|ref|YP_003480282.1| - 3.9e-08 33.7 7.0 1.4e-07 32.0 7.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|289581816|ref|YP_003480282.1| - 0.046 13.7 1.7 0.089 12.7 1.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|289581816|ref|YP_003480282.1| - 0.21 11.6 0.7 0.37 10.8 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb1_1 PF04997.12 gi|289581817|ref|YP_003480283.1| - 3.7e-112 374.7 0.0 5.6e-112 374.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|289581817|ref|YP_003480283.1| - 2.8e-68 229.3 0.4 4.7e-68 228.6 0.4 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|289581817|ref|YP_003480283.1| - 3e-32 110.8 0.0 7.4e-32 109.5 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|289581817|ref|YP_003480283.1| - 1.2e-28 100.0 0.0 2.1e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|289581817|ref|YP_003480283.1| - 1.3e-26 93.7 0.0 2.6e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|289581817|ref|YP_003480283.1| - 0.046 13.8 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix RNA_pol_Rpb1_5 PF04998.17 gi|289581818|ref|YP_003480284.1| - 1.7e-54 185.1 0.1 2e-54 184.8 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|289581818|ref|YP_003480284.1| - 0.014 15.4 0.1 1.3 9.1 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain KH_2 PF07650.17 gi|289581819|ref|YP_003480285.1| - 2e-13 49.9 0.1 3e-05 23.7 0.0 2.6 3 0 0 3 3 3 2 KH domain KH_5 PF13184.6 gi|289581819|ref|YP_003480285.1| - 4e-09 36.4 0.1 2.1e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|289581819|ref|YP_003480285.1| - 5.2e-09 35.9 1.2 6.4e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|289581819|ref|YP_003480285.1| - 0.012 15.4 0.0 0.24 11.2 0.0 2.2 2 0 0 2 2 2 0 KH domain Aldedh PF00171.22 gi|289581820|ref|YP_003480286.1| - 2e-155 517.8 0.0 2.3e-155 517.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family V4R PF02830.18 gi|289581821|ref|YP_003480287.1| - 0.00019 21.4 0.2 0.00035 20.5 0.2 1.4 1 0 0 1 1 1 1 V4R domain Ribosom_S12_S23 PF00164.25 gi|289581822|ref|YP_003480288.1| - 3.1e-50 168.5 0.5 3.9e-50 168.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|289581823|ref|YP_003480289.1| - 1.5e-35 122.0 2.1 1.9e-35 121.7 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.9 gi|289581823|ref|YP_003480289.1| - 0.031 14.3 0.1 0.054 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) DUF1727 PF08353.10 gi|289581823|ref|YP_003480289.1| - 0.082 12.8 0.1 8.2 6.4 0.0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF1727) HTH_20 PF12840.7 gi|289581824|ref|YP_003480290.1| - 8.9e-06 25.7 0.1 1.1e-05 25.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289581824|ref|YP_003480290.1| - 0.0014 18.5 0.1 0.0018 18.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LcrV PF04792.12 gi|289581824|ref|YP_003480290.1| - 0.038 13.3 0.0 0.038 13.3 0.0 1.0 1 0 0 1 1 1 0 V antigen (LcrV) protein HTH_7 PF02796.15 gi|289581824|ref|YP_003480290.1| - 0.041 14.0 0.1 0.052 13.6 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF919 PF06034.11 gi|289581824|ref|YP_003480290.1| - 0.041 13.7 0.2 0.053 13.4 0.2 1.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HTH_11 PF08279.12 gi|289581824|ref|YP_003480290.1| - 0.049 13.6 0.2 0.07 13.1 0.2 1.2 1 0 0 1 1 1 0 HTH domain ArsR PF09824.9 gi|289581824|ref|YP_003480290.1| - 0.11 12.0 0.1 0.14 11.8 0.1 1.0 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF1724 PF08350.10 gi|289581825|ref|YP_003480291.1| - 1.4e-05 25.1 0.1 2.5e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) GIT_SHD PF08518.11 gi|289581825|ref|YP_003480291.1| - 0.037 13.6 0.1 0.18 11.4 0.1 2.2 1 1 0 1 1 1 0 Spa2 homology domain (SHD) of GIT ABC2_membrane_2 PF12679.7 gi|289581826|ref|YP_003480292.1| - 2.3e-16 59.9 22.2 2e-15 56.8 22.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289581826|ref|YP_003480292.1| - 6.2e-08 32.8 4.2 6.2e-08 32.8 4.2 1.9 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289581826|ref|YP_003480292.1| - 0.00048 19.8 6.9 0.00048 19.8 6.9 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|289581827|ref|YP_003480293.1| - 2.2e-17 63.3 9.1 2.9e-17 62.9 9.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289581827|ref|YP_003480293.1| - 0.0024 17.0 13.2 0.0041 16.3 13.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3767 PF12597.8 gi|289581827|ref|YP_003480293.1| - 0.23 11.3 0.7 1 9.3 0.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3767) ABC_tran PF00005.27 gi|289581828|ref|YP_003480294.1| - 2.3e-25 89.7 0.0 4.6e-25 88.7 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289581828|ref|YP_003480294.1| - 1.2e-12 48.3 0.0 1.7e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581828|ref|YP_003480294.1| - 2.1e-06 28.4 0.0 5.2e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|289581828|ref|YP_003480294.1| - 0.0015 18.0 0.0 0.046 13.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|289581828|ref|YP_003480294.1| - 0.039 13.7 0.2 0.2 11.4 0.2 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|289581828|ref|YP_003480294.1| - 0.057 13.1 0.0 0.91 9.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|289581828|ref|YP_003480294.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|289581828|ref|YP_003480294.1| - 0.24 11.9 0.0 0.37 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain TAT_signal PF10518.9 gi|289581829|ref|YP_003480295.1| - 0.26 11.2 2.6 0.43 10.5 2.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M78 PF06114.13 gi|289581830|ref|YP_003480296.1| - 0.038 13.9 0.1 0.062 13.2 0.1 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain GTP_EFTU PF00009.27 gi|289581831|ref|YP_003480297.1| - 2.5e-64 216.4 0.4 4.1e-64 215.7 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|289581831|ref|YP_003480297.1| - 2.6e-24 85.3 0.0 7.2e-24 83.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|289581831|ref|YP_003480297.1| - 1.1e-23 83.0 0.0 9.2e-23 80.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|289581831|ref|YP_003480297.1| - 1.6e-21 76.1 0.5 4.5e-21 74.7 0.5 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|289581831|ref|YP_003480297.1| - 1e-15 57.8 1.3 6.9e-15 55.2 0.9 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|289581831|ref|YP_003480297.1| - 5.7e-05 23.2 0.1 0.0002 21.4 0.1 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|289581831|ref|YP_003480297.1| - 0.036 13.9 0.1 0.086 12.7 0.1 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|289581831|ref|YP_003480297.1| - 0.13 11.7 0.1 0.45 9.9 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|289581831|ref|YP_003480297.1| - 0.15 11.6 0.0 0.35 10.5 0.0 1.5 1 0 0 1 1 1 0 Ras family HalOD1 PF18545.1 gi|289581832|ref|YP_003480298.1| - 6.3e-19 68.0 1.0 8.8e-19 67.6 1.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_20 PF12840.7 gi|289581833|ref|YP_003480299.1| - 0.054 13.6 3.4 0.18 11.9 3.4 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Amido_AtzD_TrzD PF09663.10 gi|289581833|ref|YP_003480299.1| - 0.15 11.1 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) DUF2273 PF10031.9 gi|289581834|ref|YP_003480300.1| - 0.012 15.6 2.5 0.014 15.4 2.5 1.1 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) Abhydrolase_1 PF00561.20 gi|289581835|ref|YP_003480301.1| - 1.8e-12 47.4 0.0 2e-10 40.7 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289581835|ref|YP_003480301.1| - 3.2e-11 44.2 2.6 4.2e-11 43.9 2.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|289581835|ref|YP_003480301.1| - 3.5e-11 42.8 0.0 1.5e-07 30.9 0.0 2.3 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|289581835|ref|YP_003480301.1| - 0.0052 16.4 0.0 0.008 15.8 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.13 gi|289581835|ref|YP_003480301.1| - 0.021 14.5 0.0 0.053 13.2 0.0 1.8 2 1 0 2 2 2 0 Serine hydrolase (FSH1) Peripla_BP_6 PF13458.6 gi|289581836|ref|YP_003480302.1| - 1.2e-66 225.7 4.8 1.6e-66 225.3 4.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|289581836|ref|YP_003480302.1| - 1.2e-11 44.3 0.1 6.6e-11 41.8 0.1 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|289581836|ref|YP_003480302.1| - 0.00017 21.3 1.4 0.00034 20.3 1.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ANF_receptor PF01094.28 gi|289581836|ref|YP_003480302.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.4 1 1 0 1 1 1 0 Receptor family ligand binding region ABC_tran PF00005.27 gi|289581837|ref|YP_003480303.1| - 1.3e-26 93.8 0.0 2e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581837|ref|YP_003480303.1| - 7.5e-07 29.2 2.6 0.016 15.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|289581837|ref|YP_003480303.1| - 9.4e-07 28.6 0.1 2.2e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|289581837|ref|YP_003480303.1| - 0.00019 22.0 0.1 0.00028 21.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289581837|ref|YP_003480303.1| - 0.0029 17.1 0.2 0.018 14.5 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289581837|ref|YP_003480303.1| - 0.0045 17.3 0.2 0.083 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|289581837|ref|YP_003480303.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|289581837|ref|YP_003480303.1| - 0.028 14.0 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|289581837|ref|YP_003480303.1| - 0.042 13.9 0.2 0.061 13.4 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|289581837|ref|YP_003480303.1| - 0.043 13.6 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|289581837|ref|YP_003480303.1| - 0.09 12.5 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|289581837|ref|YP_003480303.1| - 0.097 13.1 0.2 0.45 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|289581838|ref|YP_003480304.1| - 3.7e-30 105.2 0.0 4.9e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581838|ref|YP_003480304.1| - 7.2e-08 32.6 0.0 0.0009 19.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289581838|ref|YP_003480304.1| - 0.00042 19.8 0.2 0.04 13.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289581838|ref|YP_003480304.1| - 0.00047 20.4 0.1 0.0011 19.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289581838|ref|YP_003480304.1| - 0.0033 17.2 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|289581838|ref|YP_003480304.1| - 0.0035 17.1 0.0 0.0068 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289581838|ref|YP_003480304.1| - 0.007 16.8 0.1 0.011 16.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|289581838|ref|YP_003480304.1| - 0.014 15.9 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|289581838|ref|YP_003480304.1| - 0.029 13.6 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|289581838|ref|YP_003480304.1| - 0.034 13.9 0.1 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|289581838|ref|YP_003480304.1| - 0.044 13.7 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain DUF3584 PF12128.8 gi|289581838|ref|YP_003480304.1| - 0.062 10.8 0.1 0.084 10.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.29 gi|289581838|ref|YP_003480304.1| - 0.066 13.6 0.0 0.12 12.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|289581838|ref|YP_003480304.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase YonK PF09642.10 gi|289581838|ref|YP_003480304.1| - 0.1 12.8 0.1 0.7 10.1 0.1 2.2 2 0 0 2 2 2 0 YonK protein AAA_19 PF13245.6 gi|289581838|ref|YP_003480304.1| - 0.1 12.9 0.2 0.52 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|289581838|ref|YP_003480304.1| - 0.11 12.5 0.1 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|289581838|ref|YP_003480304.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 gi|289581838|ref|YP_003480304.1| - 0.13 12.4 0.1 0.44 10.6 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.9 gi|289581838|ref|YP_003480304.1| - 0.13 11.1 0.1 0.18 10.6 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain BPD_transp_2 PF02653.16 gi|289581839|ref|YP_003480305.1| - 2e-37 128.8 41.8 2.5e-37 128.5 41.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|289581840|ref|YP_003480306.1| - 5e-37 127.5 31.1 8.1e-37 126.8 31.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2434 PF10361.9 gi|289581840|ref|YP_003480306.1| - 0.054 12.5 0.1 0.12 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2434) Seryl_tRNA_N PF02403.22 gi|289581841|ref|YP_003480307.1| - 1.3e-26 92.9 7.1 2.1e-26 92.3 7.1 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|289581841|ref|YP_003480307.1| - 5.6e-26 91.6 0.0 9.6e-26 90.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) THOC7 PF05615.13 gi|289581841|ref|YP_003480307.1| - 0.095 13.0 3.3 0.22 11.8 3.3 1.6 1 0 0 1 1 1 0 Tho complex subunit 7 Nop14 PF04147.12 gi|289581841|ref|YP_003480307.1| - 0.11 10.7 6.9 0.15 10.2 6.9 1.1 1 0 0 1 1 1 0 Nop14-like family FapA PF03961.13 gi|289581841|ref|YP_003480307.1| - 0.28 9.7 2.1 0.41 9.2 2.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Glutaredoxin PF00462.24 gi|289581841|ref|YP_003480307.1| - 0.37 11.0 0.9 18 5.7 0.2 3.1 3 0 0 3 3 3 0 Glutaredoxin Cnn_1N PF07989.11 gi|289581841|ref|YP_003480307.1| - 0.58 10.3 6.1 1 9.6 5.0 2.0 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 LidA_Long_CC PF18641.1 gi|289581841|ref|YP_003480307.1| - 0.78 9.8 5.4 18 5.3 5.4 2.2 1 1 1 2 2 2 0 LidA long coiled-coil domain TMF_DNA_bd PF12329.8 gi|289581841|ref|YP_003480307.1| - 1.9 8.5 9.4 4.1 7.5 9.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0242 PF06785.11 gi|289581841|ref|YP_003480307.1| - 2.8 8.0 6.4 4.4 7.4 6.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus PhoU PF01895.19 gi|289581842|ref|YP_003480308.1| - 3.2e-11 43.5 3.6 7.4e-11 42.4 3.6 1.6 1 0 0 1 1 1 1 PhoU domain TrkA_C PF02080.21 gi|289581842|ref|YP_003480308.1| - 3.8e-11 42.7 0.2 8.8e-11 41.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain SEN1_N PF12726.7 gi|289581842|ref|YP_003480308.1| - 0.27 9.4 0.0 4.6 5.3 0.0 2.0 2 0 0 2 2 2 0 SEN1 N terminal MgtE PF01769.16 gi|289581843|ref|YP_003480309.1| - 9.6e-28 97.0 4.0 1.6e-27 96.3 4.0 1.4 1 0 0 1 1 1 1 Divalent cation transporter CBS PF00571.28 gi|289581843|ref|YP_003480309.1| - 2.8e-12 46.9 4.8 1.6e-06 28.4 2.1 2.6 2 0 0 2 2 2 2 CBS domain DUF3021 PF11457.8 gi|289581843|ref|YP_003480309.1| - 0.21 11.9 2.2 0.34 11.3 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) Usp PF00582.26 gi|289581844|ref|YP_003480310.1| - 2.3e-32 112.4 0.7 2.7e-32 112.2 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family KH_4 PF13083.6 gi|289581844|ref|YP_003480310.1| - 0.016 15.0 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 KH domain Autoind_bind PF03472.15 gi|289581844|ref|YP_003480310.1| - 0.094 12.2 0.1 3.1 7.3 0.1 2.1 1 1 0 1 1 1 0 Autoinducer binding domain CRCB PF02537.15 gi|289581845|ref|YP_003480311.1| - 1.6e-22 79.6 6.3 2.3e-22 79.1 6.3 1.2 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|289581846|ref|YP_003480312.1| - 1.5e-14 54.0 8.3 1.9e-14 53.7 8.3 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) TrbE PF11100.8 gi|289581846|ref|YP_003480312.1| - 0.047 13.9 1.1 0.064 13.5 0.0 1.7 2 0 0 2 2 2 0 Conjugal transfer protein TrbE Cation_efflux PF01545.21 gi|289581847|ref|YP_003480313.1| - 2.5e-41 141.6 8.2 2.9e-41 141.4 8.2 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|289581847|ref|YP_003480313.1| - 4.5e-15 55.5 1.1 8.8e-15 54.6 1.1 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter EI24 PF07264.11 gi|289581847|ref|YP_003480313.1| - 0.0035 17.6 4.4 0.043 14.1 1.3 2.1 2 0 0 2 2 2 2 Etoposide-induced protein 2.4 (EI24) Na_H_antiport_2 PF13726.6 gi|289581847|ref|YP_003480313.1| - 0.01 16.0 0.4 0.028 14.5 0.4 1.8 1 0 0 1 1 1 1 Na+-H+ antiporter family Lactamase_B PF00753.27 gi|289581848|ref|YP_003480314.1| - 1.5e-25 90.4 7.1 2.8e-25 89.5 7.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289581848|ref|YP_003480314.1| - 2.5e-07 30.4 0.2 5.7e-07 29.3 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|289581849|ref|YP_003480315.1| - 2.4e-93 313.0 0.0 2.9e-93 312.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289581849|ref|YP_003480315.1| - 0.09 13.8 0.1 0.19 12.7 0.1 1.6 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain ABC_tran PF00005.27 gi|289581850|ref|YP_003480316.1| - 1.7e-31 109.6 0.0 2.4e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581850|ref|YP_003480316.1| - 1.8e-12 47.7 0.0 1.1e-06 28.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289581850|ref|YP_003480316.1| - 1.9e-10 40.6 0.1 0.00037 20.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|289581850|ref|YP_003480316.1| - 6e-07 29.5 0.0 5.3e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|289581850|ref|YP_003480316.1| - 1.1e-05 25.1 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|289581850|ref|YP_003480316.1| - 3.2e-05 22.9 0.0 0.005 15.7 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|289581850|ref|YP_003480316.1| - 4.8e-05 23.9 0.0 7.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|289581850|ref|YP_003480316.1| - 5.2e-05 23.4 0.0 8.1e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289581850|ref|YP_003480316.1| - 5.9e-05 23.5 0.0 8.6e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581850|ref|YP_003480316.1| - 0.00013 22.3 0.3 0.00058 20.1 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|289581850|ref|YP_003480316.1| - 0.00019 21.5 0.0 0.00089 19.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|289581850|ref|YP_003480316.1| - 0.00023 20.8 0.0 0.0005 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|289581850|ref|YP_003480316.1| - 0.0006 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|289581850|ref|YP_003480316.1| - 0.0012 18.7 0.2 0.0021 17.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|289581850|ref|YP_003480316.1| - 0.0035 17.3 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|289581850|ref|YP_003480316.1| - 0.0062 16.8 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|289581850|ref|YP_003480316.1| - 0.0076 16.2 0.1 0.024 14.6 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|289581850|ref|YP_003480316.1| - 0.0093 16.5 0.0 0.021 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|289581850|ref|YP_003480316.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|289581850|ref|YP_003480316.1| - 0.019 15.0 0.1 0.073 13.1 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|289581850|ref|YP_003480316.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|289581850|ref|YP_003480316.1| - 0.03 14.7 0.0 0.099 13.1 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|289581850|ref|YP_003480316.1| - 0.033 13.6 0.0 3.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|289581850|ref|YP_003480316.1| - 0.057 13.3 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|289581850|ref|YP_003480316.1| - 0.073 13.1 0.1 0.56 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|289581850|ref|YP_003480316.1| - 0.093 13.1 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.20 gi|289581850|ref|YP_003480316.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|289581850|ref|YP_003480316.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|289581850|ref|YP_003480316.1| - 0.11 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|289581850|ref|YP_003480316.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase IstB_IS21 PF01695.17 gi|289581850|ref|YP_003480316.1| - 0.12 12.1 0.4 0.53 10.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|289581850|ref|YP_003480316.1| - 0.14 12.4 0.0 1.6 9.0 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit VirE PF05272.11 gi|289581850|ref|YP_003480316.1| - 0.2 11.4 0.0 0.57 9.9 0.0 1.7 2 0 0 2 2 2 0 Virulence-associated protein E G-alpha PF00503.20 gi|289581850|ref|YP_003480316.1| - 0.27 10.3 0.0 0.42 9.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit EMP24_GP25L PF01105.24 gi|289581851|ref|YP_003480317.1| - 0.016 15.2 0.7 0.038 13.9 0.0 1.9 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Filamin PF00630.19 gi|289581851|ref|YP_003480317.1| - 0.022 15.5 0.0 0.066 14.0 0.0 1.8 1 1 0 1 1 1 0 Filamin/ABP280 repeat MarR_2 PF12802.7 gi|289581852|ref|YP_003480318.1| - 7.2e-06 25.8 0.2 1.4e-05 24.9 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289581852|ref|YP_003480318.1| - 2.5e-05 24.1 0.2 4.1e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|289581852|ref|YP_003480318.1| - 6e-05 22.9 0.1 0.00012 22.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289581852|ref|YP_003480318.1| - 9e-05 22.0 0.2 0.00013 21.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|289581852|ref|YP_003480318.1| - 0.0001 21.9 0.7 0.00021 20.9 0.3 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|289581852|ref|YP_003480318.1| - 0.0087 16.4 0.1 0.014 15.8 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|289581852|ref|YP_003480318.1| - 0.032 14.0 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain RepL PF05732.11 gi|289581852|ref|YP_003480318.1| - 0.033 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|289581852|ref|YP_003480318.1| - 0.055 13.7 0.1 0.084 13.1 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|289581852|ref|YP_003480318.1| - 0.055 13.2 0.3 0.087 12.6 0.3 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|289581852|ref|YP_003480318.1| - 0.071 13.1 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 HTH domain VirB8 PF04335.13 gi|289581852|ref|YP_003480318.1| - 0.083 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 VirB8 protein HTH_5 PF01022.20 gi|289581852|ref|YP_003480318.1| - 0.083 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2382 PF09557.10 gi|289581853|ref|YP_003480319.1| - 1.2 9.4 8.5 0.18 12.1 2.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF2382) DEAD PF00270.29 gi|289581854|ref|YP_003480320.1| - 7.2e-21 74.7 0.0 1.4e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|289581854|ref|YP_003480320.1| - 8.9e-15 55.0 0.0 2.1e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|289581854|ref|YP_003480320.1| - 1.7e-10 41.2 0.0 2.9e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit BofA PF07441.11 gi|289581855|ref|YP_003480321.1| - 1.4e-08 34.8 19.2 1.8e-08 34.5 19.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA GTA_holin_3TM PF11351.8 gi|289581855|ref|YP_003480321.1| - 1.5 9.4 3.7 1.8 9.1 3.7 1.3 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release DUF502 PF04367.13 gi|289581856|ref|YP_003480322.1| - 4.9e-24 84.3 0.0 1.1e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) FtsX PF02687.21 gi|289581856|ref|YP_003480322.1| - 0.23 12.0 4.7 0.4 11.2 4.7 1.4 1 0 0 1 1 1 0 FtsX-like permease family Virul_fac_BrkB PF03631.15 gi|289581856|ref|YP_003480322.1| - 0.49 10.0 5.9 0.66 9.5 5.9 1.2 1 0 0 1 1 1 0 Virulence factor BrkB Resolvase PF00239.21 gi|289581857|ref|YP_003480323.1| - 1.1e-21 77.5 0.1 1.5e-21 77.0 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|289581857|ref|YP_003480323.1| - 8.9e-09 35.4 0.0 1.8e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|289581857|ref|YP_003480323.1| - 0.00022 21.3 0.0 0.00036 20.6 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 gi|289581857|ref|YP_003480323.1| - 0.00057 19.6 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.6 gi|289581857|ref|YP_003480323.1| - 0.0024 17.6 0.0 0.0075 16.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.22 gi|289581857|ref|YP_003480323.1| - 0.0045 17.0 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|289581857|ref|YP_003480323.1| - 0.011 15.9 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|289581857|ref|YP_003480323.1| - 0.015 15.2 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) YdaS_antitoxin PF15943.5 gi|289581857|ref|YP_003480323.1| - 0.02 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF1323 PF07037.11 gi|289581857|ref|YP_003480323.1| - 0.063 13.7 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) OrfB_Zn_ribbon PF07282.11 gi|289581858|ref|YP_003480324.1| - 1.1e-12 47.7 0.5 2.5e-12 46.5 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289581858|ref|YP_003480324.1| - 0.00023 21.4 0.7 0.00023 21.4 0.7 1.9 2 0 0 2 2 2 1 Probable transposase Lar_restr_allev PF14354.6 gi|289581858|ref|YP_003480324.1| - 0.096 13.1 1.1 0.23 11.9 1.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.12 gi|289581858|ref|YP_003480324.1| - 0.25 11.4 2.3 0.69 9.9 2.3 1.8 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger MCM PF00493.23 gi|289581859|ref|YP_003480325.1| - 2.2e-86 288.6 0.1 3.3e-48 163.7 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|289581859|ref|YP_003480325.1| - 2.2e-36 124.5 0.2 4.7e-36 123.4 0.2 1.6 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|289581859|ref|YP_003480325.1| - 4.1e-28 97.6 0.5 1.1e-27 96.2 0.5 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain Intein_splicing PF14890.6 gi|289581859|ref|YP_003480325.1| - 5.4e-25 87.9 0.0 1.5e-13 50.8 0.0 2.8 2 0 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|289581859|ref|YP_003480325.1| - 1e-21 77.0 0.4 1.4e-16 60.6 0.2 3.2 3 0 0 3 3 2 2 LAGLIDADG-like domain MCM_N PF14551.6 gi|289581859|ref|YP_003480325.1| - 5.5e-09 36.6 0.9 5.5e-09 36.6 0.9 2.7 3 0 0 3 3 2 1 MCM N-terminal domain HTH_3 PF01381.22 gi|289581859|ref|YP_003480325.1| - 2.5e-08 33.8 1.7 0.00088 19.3 0.9 3.7 4 0 0 4 4 3 2 Helix-turn-helix Mg_chelatase PF01078.21 gi|289581859|ref|YP_003480325.1| - 7.4e-05 22.2 0.2 0.26 10.6 0.0 3.2 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI HTH_19 PF12844.7 gi|289581859|ref|YP_003480325.1| - 0.00018 21.5 0.9 0.0046 17.0 0.2 3.8 5 0 0 5 5 3 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|289581859|ref|YP_003480325.1| - 0.00073 19.9 0.0 1.4 9.4 0.1 2.8 2 0 0 2 2 2 2 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|289581859|ref|YP_003480325.1| - 0.0011 19.3 11.0 0.016 15.5 0.0 4.4 3 1 1 4 4 3 2 Helix-turn-helix domain HTH_7 PF02796.15 gi|289581859|ref|YP_003480325.1| - 0.0086 16.1 0.1 3.5 7.8 0.0 3.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|289581859|ref|YP_003480325.1| - 0.0086 15.8 0.2 0.19 11.5 0.0 2.9 2 1 0 2 2 2 1 Homeodomain-like domain AAA_5 PF07728.14 gi|289581859|ref|YP_003480325.1| - 0.018 15.1 0.1 0.11 12.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HTH_37 PF13744.6 gi|289581859|ref|YP_003480325.1| - 0.023 14.6 1.2 0.39 10.7 0.2 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|289581859|ref|YP_003480325.1| - 0.032 14.1 0.5 3.6 7.5 0.1 3.3 3 0 0 3 3 2 0 Helix-turn-helix domain Hint PF01079.20 gi|289581859|ref|YP_003480325.1| - 0.042 13.3 0.0 0.15 11.6 0.0 1.9 1 1 0 1 1 1 0 Hint module HTH_Tnp_1_2 PF13022.6 gi|289581859|ref|YP_003480325.1| - 0.048 13.8 0.2 1.3 9.2 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Phage_CI_repr PF07022.13 gi|289581859|ref|YP_003480325.1| - 0.067 13.3 0.0 18 5.5 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain AAA_16 PF13191.6 gi|289581859|ref|YP_003480325.1| - 0.094 13.1 0.0 0.094 13.1 0.0 3.0 5 1 0 5 5 3 0 AAA ATPase domain HTH_24 PF13412.6 gi|289581859|ref|YP_003480325.1| - 0.13 11.9 3.5 0.46 10.1 0.2 3.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding AAA_7 PF12775.7 gi|289581859|ref|YP_003480325.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2316 PF10078.9 gi|289581859|ref|YP_003480325.1| - 0.41 10.9 2.1 2.2 8.6 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2316) SurA_N_2 PF13623.6 gi|289581859|ref|YP_003480325.1| - 1.2 9.0 10.9 5.2 6.9 0.4 3.8 4 0 0 4 4 3 0 SurA N-terminal domain TFIIB PF00382.19 gi|289581860|ref|YP_003480326.1| - 3.8e-21 74.9 1.3 4.4e-13 49.1 0.5 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289581860|ref|YP_003480326.1| - 3.4e-12 45.7 4.4 6.9e-12 44.7 4.4 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|289581860|ref|YP_003480326.1| - 0.0018 18.3 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain DnaG_DnaB_bind PF08278.11 gi|289581860|ref|YP_003480326.1| - 0.039 14.5 0.4 0.11 13.1 0.4 1.7 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding OrfB_Zn_ribbon PF07282.11 gi|289581860|ref|YP_003480326.1| - 0.059 13.3 0.5 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|289581860|ref|YP_003480326.1| - 0.12 12.4 0.2 0.26 11.3 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbons Isochorismatase PF00857.20 gi|289581861|ref|YP_003480327.1| - 4.5e-51 173.5 0.0 5.1e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M13 PF01431.21 gi|289581862|ref|YP_003480328.1| - 0.11 12.0 1.1 6.9 6.2 0.2 2.3 2 0 0 2 2 2 0 Peptidase family M13 Peptidase_M78 PF06114.13 gi|289581862|ref|YP_003480328.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 IrrE N-terminal-like domain Glyco_hydro_20b PF02838.15 gi|289581863|ref|YP_003480329.1| - 0.016 15.9 1.1 0.034 14.9 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 20, domain 2 Nop14 PF04147.12 gi|289581863|ref|YP_003480329.1| - 1.8 6.7 15.0 3.1 5.9 15.0 1.3 1 0 0 1 1 1 0 Nop14-like family QRPTase_C PF01729.19 gi|289581864|ref|YP_003480330.1| - 3.5e-16 59.4 0.0 4.9e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|289581864|ref|YP_003480330.1| - 0.037 14.1 0.0 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain AMMECR1 PF01871.17 gi|289581865|ref|YP_003480331.1| - 4.8e-40 136.9 0.0 5.5e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 HalOD1 PF18545.1 gi|289581866|ref|YP_003480332.1| - 1.8e-22 79.4 2.6 2e-22 79.2 2.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 tRNA_anti-codon PF01336.25 gi|289581867|ref|YP_003480333.1| - 2.3e-30 104.4 7.1 2.8e-12 46.4 0.4 3.4 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|289581867|ref|YP_003480333.1| - 4.2e-14 52.2 3.0 1.2e-05 25.1 0.1 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|289581867|ref|YP_003480333.1| - 1.4e-09 38.0 0.0 0.063 13.0 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 Rep_fac-A_C PF08646.10 gi|289581867|ref|YP_003480333.1| - 0.0031 17.3 0.0 2.2 8.0 0.0 3.1 3 0 0 3 3 3 1 Replication factor-A C terminal domain DUF4131 PF13567.6 gi|289581867|ref|YP_003480333.1| - 0.0071 16.0 0.1 4.5 6.9 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4131) POT1PC PF16686.5 gi|289581867|ref|YP_003480333.1| - 0.0072 16.2 0.0 2.7 7.9 0.0 2.7 2 0 0 2 2 2 2 ssDNA-binding domain of telomere protection protein DUF4539 PF15072.6 gi|289581867|ref|YP_003480333.1| - 0.028 14.4 0.7 0.39 10.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4539) SSB PF00436.25 gi|289581867|ref|YP_003480333.1| - 0.039 14.0 0.2 9.1 6.4 0.0 3.1 3 0 0 3 3 3 0 Single-strand binding protein family tRNA_anti_2 PF13742.6 gi|289581867|ref|YP_003480333.1| - 0.054 13.7 0.0 20 5.5 0.0 2.9 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain CBFD_NFYB_HMF PF00808.23 gi|289581868|ref|YP_003480334.1| - 2.4e-24 85.4 0.1 1.3e-12 47.8 0.0 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|289581868|ref|YP_003480334.1| - 3.5e-16 59.8 0.2 4.6e-10 40.0 0.0 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|289581868|ref|YP_003480334.1| - 9.5e-06 25.7 0.1 0.0018 18.3 0.1 2.0 2 0 0 2 2 2 2 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|289581868|ref|YP_003480334.1| - 0.011 16.2 0.4 0.022 15.2 0.1 1.6 2 0 0 2 2 2 0 CENP-S protein Hist_deacetyl PF00850.19 gi|289581869|ref|YP_003480335.1| - 1.7e-82 277.4 0.0 2.5e-82 276.8 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.11 gi|289581871|ref|YP_003480337.1| - 3.7e-43 146.4 0.0 6.8e-43 145.5 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|289581871|ref|YP_003480337.1| - 3.9e-13 49.5 0.0 8.7e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|289581871|ref|YP_003480337.1| - 0.00068 19.8 0.0 0.0077 16.4 0.0 2.1 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain PDDEXK_5 PF11645.8 gi|289581872|ref|YP_003480338.1| - 2.5e-23 82.6 0.0 2.8e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease Gamma_PGA_hydro PF05908.11 gi|289581873|ref|YP_003480339.1| - 1e-14 54.4 0.0 1.9e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase Gamma_PGA_hydro PF05908.11 gi|289581874|ref|YP_003480340.1| - 1.7e-07 30.8 0.0 3.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase Asp_decarbox PF02261.16 gi|289581874|ref|YP_003480340.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Aspartate decarboxylase Mur_ligase_M PF08245.12 gi|289581875|ref|YP_003480341.1| - 3.1e-08 33.8 0.0 4.8e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain ST7 PF04184.12 gi|289581875|ref|YP_003480341.1| - 0.087 11.3 0.1 0.14 10.6 0.1 1.3 1 0 0 1 1 1 0 ST7 protein Caps_synth_CapC PF14102.6 gi|289581876|ref|YP_003480342.1| - 1.8e-28 99.3 34.3 8.2e-21 74.6 11.0 2.9 3 0 0 3 3 3 2 Capsule biosynthesis CapC DUF5353 PF17304.2 gi|289581876|ref|YP_003480342.1| - 4.3 7.2 10.1 0.27 11.0 0.2 3.9 3 2 1 4 4 4 0 Family of unknown function (DUF5353) NikR_C PF08753.11 gi|289581877|ref|YP_003480343.1| - 1.7e-16 60.2 0.2 2.3e-16 59.7 0.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|289581877|ref|YP_003480343.1| - 5.3e-05 23.0 0.1 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|289581877|ref|YP_003480343.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Arc PF03869.14 gi|289581877|ref|YP_003480343.1| - 0.14 12.1 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 Arc-like DNA binding domain cobW PF02492.19 gi|289581878|ref|YP_003480344.1| - 3.2e-51 173.4 0.1 4.2e-51 173.0 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|289581878|ref|YP_003480344.1| - 3.6e-25 87.7 0.0 7.4e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|289581878|ref|YP_003480344.1| - 0.0032 17.4 0.1 0.28 11.1 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase T2SSE PF00437.20 gi|289581878|ref|YP_003480344.1| - 0.028 13.5 0.2 0.043 12.9 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|289581878|ref|YP_003480344.1| - 0.054 12.8 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin TsaE PF02367.17 gi|289581878|ref|YP_003480344.1| - 0.071 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|289581879|ref|YP_003480345.1| - 5.8e-44 149.8 0.0 8.1e-44 149.3 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|289581879|ref|YP_003480345.1| - 6.7e-23 80.4 0.1 1.9e-22 79.0 0.1 1.8 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain MeaB PF03308.16 gi|289581879|ref|YP_003480345.1| - 0.002 17.2 2.0 0.39 9.6 0.1 3.0 2 1 1 3 3 3 2 Methylmalonyl Co-A mutase-associated GTPase MeaB TsaE PF02367.17 gi|289581879|ref|YP_003480345.1| - 0.0027 17.7 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|289581879|ref|YP_003480345.1| - 0.0041 17.0 0.2 0.66 9.9 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|289581879|ref|YP_003480345.1| - 0.0093 16.4 0.2 0.025 15.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|289581879|ref|YP_003480345.1| - 0.096 12.0 0.1 0.18 11.0 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|289581879|ref|YP_003480345.1| - 0.13 12.6 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|289581879|ref|YP_003480345.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 gi|289581879|ref|YP_003480345.1| - 0.3 11.6 0.3 0.6 10.6 0.3 1.5 1 0 0 1 1 1 0 AAA domain PhoR PF11808.8 gi|289581880|ref|YP_003480346.1| - 4.2 7.9 15.3 14 6.2 2.9 4.1 4 0 0 4 4 4 0 Phosphate regulon sensor protein PhoR MoCF_biosynth PF00994.24 gi|289581881|ref|YP_003480347.1| - 2.4e-29 101.8 0.1 3e-29 101.5 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain zf-C2H2_jaz PF12171.8 gi|289581882|ref|YP_003480348.1| - 0.014 15.7 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2H2 PF00096.26 gi|289581882|ref|YP_003480348.1| - 0.031 14.8 0.1 0.054 14.0 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|289581882|ref|YP_003480348.1| - 0.041 14.7 0.1 0.075 13.9 0.1 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger RMI1_C PF16099.5 gi|289581883|ref|YP_003480349.1| - 0.068 13.0 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Notch PF00066.17 gi|289581883|ref|YP_003480349.1| - 0.15 12.5 0.6 0.24 11.9 0.6 1.3 1 0 0 1 1 1 0 LNR domain TMEM171 PF15471.6 gi|289581884|ref|YP_003480350.1| - 0.05 12.6 0.1 0.068 12.1 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 HTH_20 PF12840.7 gi|289581885|ref|YP_003480351.1| - 1.2e-05 25.3 0.4 5.6e-05 23.1 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|289581885|ref|YP_003480351.1| - 7.9e-05 22.5 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|289581885|ref|YP_003480351.1| - 0.00024 20.7 0.4 0.0037 16.9 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|289581885|ref|YP_003480351.1| - 0.00032 20.5 0.0 0.00073 19.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|289581885|ref|YP_003480351.1| - 0.00057 19.7 0.1 0.002 17.9 0.0 1.9 1 1 1 2 2 2 1 MarR family HTH_5 PF01022.20 gi|289581885|ref|YP_003480351.1| - 0.0039 17.0 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|289581885|ref|YP_003480351.1| - 0.0058 16.6 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|289581885|ref|YP_003480351.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family ORC4_C PF14629.6 gi|289581885|ref|YP_003480351.1| - 0.097 12.0 0.1 0.27 10.6 0.0 1.6 1 1 0 2 2 2 0 Origin recognition complex (ORC) subunit 4 C-terminus HTH_29 PF13551.6 gi|289581885|ref|YP_003480351.1| - 0.16 12.0 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix ABC2_membrane_2 PF12679.7 gi|289581887|ref|YP_003480353.1| - 1.3e-18 67.3 14.1 2.4e-18 66.4 14.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289581887|ref|YP_003480353.1| - 1.2e-09 37.7 8.4 1.2e-09 37.7 8.4 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289581887|ref|YP_003480353.1| - 2.6e-06 27.5 5.6 5.5e-06 26.5 5.6 1.6 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|289581887|ref|YP_003480353.1| - 0.00068 19.1 12.7 0.0022 17.4 12.7 1.9 1 1 0 1 1 1 1 ABC-2 type transporter SCAMP PF04144.13 gi|289581887|ref|YP_003480353.1| - 0.77 10.0 8.5 4.5 7.5 8.5 2.4 1 1 0 1 1 1 0 SCAMP family ABC2_membrane_2 PF12679.7 gi|289581888|ref|YP_003480354.1| - 3.6e-23 82.3 20.9 4.5e-23 82.0 20.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289581888|ref|YP_003480354.1| - 8.2e-08 32.0 6.7 8.2e-08 32.0 6.7 2.4 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289581888|ref|YP_003480354.1| - 2.3e-07 30.3 9.9 2.3e-07 30.3 9.9 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289581888|ref|YP_003480354.1| - 8.3e-07 29.1 10.6 8.3e-07 29.1 10.6 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289581889|ref|YP_003480355.1| - 1.3e-27 96.9 0.0 2.8e-27 95.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581889|ref|YP_003480355.1| - 1.3e-13 51.4 0.0 1.1e-07 32.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289581889|ref|YP_003480355.1| - 5e-12 46.4 0.1 1.2e-11 45.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|289581889|ref|YP_003480355.1| - 0.0012 18.5 0.2 0.0025 17.5 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|289581889|ref|YP_003480355.1| - 0.0029 17.1 0.0 0.63 9.4 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|289581889|ref|YP_003480355.1| - 0.0074 16.7 0.4 0.024 15.0 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581889|ref|YP_003480355.1| - 0.022 15.0 0.0 0.068 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289581889|ref|YP_003480355.1| - 0.031 14.0 0.1 0.16 11.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|289581889|ref|YP_003480355.1| - 0.043 14.3 0.8 0.07 13.6 0.8 1.2 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|289581889|ref|YP_003480355.1| - 0.17 11.1 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Glyoxalase PF00903.25 gi|289581890|ref|YP_003480356.1| - 3.6e-09 36.9 0.2 8.3e-09 35.7 0.2 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289581890|ref|YP_003480356.1| - 1.5e-06 28.4 0.7 2.1e-05 24.8 0.2 2.4 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289581890|ref|YP_003480356.1| - 0.0001 23.0 0.9 0.00016 22.4 0.9 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|289581890|ref|YP_003480356.1| - 0.027 14.6 1.0 0.28 11.3 1.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain RHH_1 PF01402.21 gi|289581891|ref|YP_003480357.1| - 0.00057 19.7 0.1 0.00057 19.7 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|289581891|ref|YP_003480357.1| - 0.013 15.1 0.1 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) RasGAP_C PF03836.15 gi|289581891|ref|YP_003480357.1| - 0.03 14.5 0.1 0.044 13.9 0.1 1.4 1 0 0 1 1 1 0 RasGAP C-terminus CopG_antitoxin PF12441.8 gi|289581891|ref|YP_003480357.1| - 0.051 14.1 2.5 0.099 13.2 0.0 2.2 2 1 1 3 3 3 0 CopG antitoxin of type II toxin-antitoxin system RHH_4 PF13467.6 gi|289581891|ref|YP_003480357.1| - 0.096 12.6 0.0 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 Ribbon-helix-helix domain Bac_luciferase PF00296.20 gi|289581892|ref|YP_003480358.1| - 3.3e-43 148.3 10.3 4e-43 148.0 10.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase ABM PF03992.16 gi|289581892|ref|YP_003480358.1| - 0.064 13.4 1.2 0.064 13.4 1.2 2.8 4 0 0 4 4 4 0 Antibiotic biosynthesis monooxygenase CMD PF02627.20 gi|289581894|ref|YP_003480360.1| - 2.4e-12 46.8 0.1 5.1e-12 45.7 0.1 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family SinI PF08671.10 gi|289581894|ref|YP_003480360.1| - 0.095 12.5 0.1 5 7.0 0.0 2.7 3 0 0 3 3 3 0 Anti-repressor SinI SBP_bac_8 PF13416.6 gi|289581895|ref|YP_003480361.1| - 6.6e-21 75.4 0.2 8.6e-21 75.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289581895|ref|YP_003480361.1| - 2e-20 74.0 2.0 2.7e-20 73.5 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|289581897|ref|YP_003480363.1| - 2.7e-17 63.1 18.8 2.7e-17 63.1 18.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4448 PF14610.6 gi|289581897|ref|YP_003480363.1| - 0.38 10.5 3.3 0.56 9.9 0.0 2.6 3 1 0 4 4 4 0 Protein of unknown function (DUF4448) BPD_transp_1 PF00528.22 gi|289581898|ref|YP_003480364.1| - 2e-18 66.8 14.5 2e-18 66.8 14.5 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|289581899|ref|YP_003480365.1| - 1.4e-31 109.8 0.0 2.6e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289581899|ref|YP_003480365.1| - 5.7e-09 36.2 0.0 0.0003 20.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|289581899|ref|YP_003480365.1| - 1.3e-08 34.9 0.1 6.8e-08 32.6 0.1 2.2 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|289581899|ref|YP_003480365.1| - 7.1e-07 30.0 0.6 3.7e-05 24.5 0.5 3.4 2 1 0 2 2 2 1 MalK OB fold domain TOBE PF03459.17 gi|289581899|ref|YP_003480365.1| - 0.00012 22.2 2.1 0.00018 21.7 0.1 2.3 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.19 gi|289581899|ref|YP_003480365.1| - 0.00022 20.7 0.0 0.0033 16.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|289581899|ref|YP_003480365.1| - 0.00045 20.7 1.9 0.2 12.3 1.9 3.4 1 1 0 1 1 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|289581899|ref|YP_003480365.1| - 0.0029 18.0 0.1 0.017 15.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289581899|ref|YP_003480365.1| - 0.0058 17.0 0.6 0.018 15.4 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|289581899|ref|YP_003480365.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|289581899|ref|YP_003480365.1| - 0.0093 16.3 0.0 0.022 15.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.6 gi|289581899|ref|YP_003480365.1| - 0.017 15.4 0.4 0.078 13.2 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289581899|ref|YP_003480365.1| - 0.018 14.7 0.0 0.064 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289581899|ref|YP_003480365.1| - 0.029 14.3 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|289581899|ref|YP_003480365.1| - 0.086 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|289581899|ref|YP_003480365.1| - 0.12 11.8 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 gi|289581899|ref|YP_003480365.1| - 0.13 11.1 1.2 0.43 9.3 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|289581899|ref|YP_003480365.1| - 0.14 11.8 0.0 0.58 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|289581899|ref|YP_003480365.1| - 0.17 12.4 0.3 0.54 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain VKG_Carbox PF05090.14 gi|289581900|ref|YP_003480366.1| - 2.2e-14 53.1 9.6 3e-14 52.7 9.6 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase PIG-L PF02585.17 gi|289581901|ref|YP_003480367.1| - 0.077 13.6 0.1 0.1 13.2 0.1 1.1 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase DUF192 PF02643.15 gi|289581902|ref|YP_003480368.1| - 9.4e-29 99.4 0.0 1.2e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 ABC_membrane PF00664.23 gi|289581903|ref|YP_003480369.1| - 3.9e-46 157.9 4.1 4.9e-46 157.6 4.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|289581903|ref|YP_003480369.1| - 1.2e-37 129.5 0.0 2.7e-37 128.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|289581903|ref|YP_003480369.1| - 8.2e-05 22.9 0.1 0.0004 20.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289581903|ref|YP_003480369.1| - 0.00015 21.3 0.1 0.008 15.6 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|289581903|ref|YP_003480369.1| - 0.0012 19.3 0.2 0.0027 18.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|289581903|ref|YP_003480369.1| - 0.0013 18.6 0.2 0.0053 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|289581903|ref|YP_003480369.1| - 0.0014 17.9 0.1 0.0036 16.6 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 gi|289581903|ref|YP_003480369.1| - 0.0026 17.7 0.0 0.0067 16.4 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|289581903|ref|YP_003480369.1| - 0.0044 17.5 0.0 0.12 12.8 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|289581903|ref|YP_003480369.1| - 0.0049 16.6 0.1 0.015 15.1 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|289581903|ref|YP_003480369.1| - 0.017 14.9 0.5 0.056 13.2 0.5 1.8 1 1 0 1 1 1 0 AAA domain YuiB PF14068.6 gi|289581903|ref|YP_003480369.1| - 0.018 15.6 2.6 38 4.9 0.3 3.5 3 0 0 3 3 3 0 Putative membrane protein AAA_33 PF13671.6 gi|289581903|ref|YP_003480369.1| - 0.024 14.8 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|289581903|ref|YP_003480369.1| - 0.033 14.7 0.0 0.11 13.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|289581903|ref|YP_003480369.1| - 0.05 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289581903|ref|YP_003480369.1| - 0.051 14.1 0.0 0.16 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|289581903|ref|YP_003480369.1| - 0.064 13.3 0.4 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|289581903|ref|YP_003480369.1| - 0.1 12.7 0.0 0.31 11.1 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|289581903|ref|YP_003480369.1| - 0.12 12.1 0.5 3.8 7.2 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein ABC_ATPase PF09818.9 gi|289581903|ref|YP_003480369.1| - 0.13 11.1 0.1 0.24 10.2 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|289581903|ref|YP_003480369.1| - 0.14 12.3 0.0 0.38 10.8 0.0 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain APS_kinase PF01583.20 gi|289581903|ref|YP_003480369.1| - 0.16 11.8 0.1 0.33 10.8 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Creatininase PF02633.14 gi|289581905|ref|YP_003480371.1| - 2.5e-69 233.4 2.0 2.9e-69 233.2 2.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran_CTD PF16326.5 gi|289581906|ref|YP_003480372.1| - 0.0081 16.4 2.2 0.0083 16.4 0.3 2.0 2 0 0 2 2 2 1 ABC transporter C-terminal domain DUF5446 PF17522.2 gi|289581906|ref|YP_003480372.1| - 0.028 14.6 0.1 0.092 12.9 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5446) SlyX PF04102.12 gi|289581906|ref|YP_003480372.1| - 0.097 13.3 0.5 0.35 11.5 0.5 2.0 1 1 0 1 1 1 0 SlyX DHNA PF04038.12 gi|289581907|ref|YP_003480373.1| - 1.6e-38 131.5 0.1 2e-38 131.2 0.1 1.1 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|289581908|ref|YP_003480374.1| - 2.4e-26 92.7 0.0 3e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289581908|ref|YP_003480374.1| - 7.5e-16 57.9 0.0 1e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|289581908|ref|YP_003480374.1| - 8.4e-15 54.6 0.0 6.4e-13 48.5 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|289581908|ref|YP_003480374.1| - 1.3e-13 51.2 0.0 2e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|289581908|ref|YP_003480374.1| - 1.7e-13 50.4 0.2 1.1e-09 37.9 0.3 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|289581908|ref|YP_003480374.1| - 1.6e-10 41.0 0.0 8.2e-10 38.6 0.0 2.2 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|289581908|ref|YP_003480374.1| - 1.1e-06 28.0 0.1 2e-06 27.1 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|289581908|ref|YP_003480374.1| - 1.1e-05 25.1 0.0 1.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|289581908|ref|YP_003480374.1| - 0.0019 18.5 0.0 0.0042 17.3 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|289581908|ref|YP_003480374.1| - 0.051 13.8 0.1 0.079 13.2 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|289581908|ref|YP_003480374.1| - 0.082 12.8 0.9 11 5.9 0.1 2.6 1 1 0 2 2 2 0 KR domain adh_short_C2 PF13561.6 gi|289581908|ref|YP_003480374.1| - 0.16 11.5 0.1 6 6.4 0.1 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Rieske PF00355.26 gi|289581910|ref|YP_003480376.1| - 2.3e-14 53.1 0.0 4e-14 52.3 0.0 1.4 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|289581910|ref|YP_003480376.1| - 9.5e-14 51.2 0.0 7.3e-13 48.4 0.0 1.9 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Amidohydro_2 PF04909.14 gi|289581911|ref|YP_003480377.1| - 1.9e-36 126.4 0.4 2.8e-36 125.8 0.4 1.4 1 1 0 1 1 1 1 Amidohydrolase IclR PF01614.18 gi|289581913|ref|YP_003480379.1| - 7.5e-30 103.4 0.0 1.2e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289581913|ref|YP_003480379.1| - 8.2e-13 48.0 1.5 6.3e-11 41.9 0.0 3.4 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289581913|ref|YP_003480379.1| - 6.8e-07 29.0 0.0 2.7e-06 27.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289581913|ref|YP_003480379.1| - 1.9e-06 27.8 0.1 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289581913|ref|YP_003480379.1| - 5.7e-06 25.8 0.0 1.6e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289581913|ref|YP_003480379.1| - 1.6e-05 24.7 0.0 3.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|289581913|ref|YP_003480379.1| - 0.0001 22.1 0.0 0.00032 20.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.11 gi|289581913|ref|YP_003480379.1| - 0.00011 22.2 0.0 0.00031 20.8 0.0 1.7 2 0 0 2 2 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289581913|ref|YP_003480379.1| - 0.00024 20.9 0.2 0.0058 16.4 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|289581913|ref|YP_003480379.1| - 0.00053 19.8 0.0 0.0015 18.4 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|289581913|ref|YP_003480379.1| - 0.00078 19.2 0.3 0.0045 16.8 0.1 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_27 PF13463.6 gi|289581913|ref|YP_003480379.1| - 0.0044 17.5 0.0 0.01 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|289581913|ref|YP_003480379.1| - 0.0091 16.2 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GXGXG PF01493.19 gi|289581913|ref|YP_003480379.1| - 0.012 15.2 0.3 0.95 9.0 0.0 2.2 2 0 0 2 2 2 0 GXGXG motif HTH_34 PF13601.6 gi|289581913|ref|YP_003480379.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|289581913|ref|YP_003480379.1| - 0.02 15.1 0.0 0.044 14.0 0.0 1.6 1 1 0 1 1 1 0 Rio2, N-terminal DUF4423 PF14394.6 gi|289581913|ref|YP_003480379.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|289581913|ref|YP_003480379.1| - 0.04 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|289581913|ref|YP_003480379.1| - 0.061 13.7 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|289581913|ref|YP_003480379.1| - 0.088 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix PSK_trans_fac PF07704.11 gi|289581913|ref|YP_003480379.1| - 0.093 13.5 2.8 10 6.9 0.1 3.6 3 1 1 4 4 4 0 Rv0623-like transcription factor DUF309 PF03745.14 gi|289581914|ref|YP_003480380.1| - 5.5e-18 64.4 2.5 8.9e-18 63.7 2.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Peptidase_M29 PF02073.15 gi|289581916|ref|YP_003480382.1| - 4.3e-63 213.5 0.0 5.1e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|289581916|ref|YP_003480382.1| - 0.24 11.9 1.9 0.79 10.2 0.1 2.8 4 0 0 4 4 4 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Vut_1 PF02592.15 gi|289581917|ref|YP_003480383.1| - 3.6e-52 176.7 6.3 3.6e-52 176.7 6.3 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter PadR PF03551.14 gi|289581918|ref|YP_003480384.1| - 4.4e-13 49.0 0.2 5.2e-13 48.8 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|289581918|ref|YP_003480384.1| - 0.0048 16.8 0.1 0.0061 16.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|289581918|ref|YP_003480384.1| - 0.061 13.6 0.0 0.096 13.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_27 PF13463.6 gi|289581918|ref|YP_003480384.1| - 0.1 13.1 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrkA_N PF02254.18 gi|289581919|ref|YP_003480385.1| - 4.2e-25 88.3 0.9 4.2e-25 88.3 0.9 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|289581919|ref|YP_003480385.1| - 2.2e-11 43.4 1.3 2.6e-11 43.2 0.2 1.7 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|289581919|ref|YP_003480385.1| - 9.6e-06 25.6 0.7 1.9e-05 24.6 0.7 1.5 1 0 0 1 1 1 1 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|289581919|ref|YP_003480385.1| - 5.6e-05 22.8 0.0 9.8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|289581919|ref|YP_003480385.1| - 9.2e-05 22.8 0.3 0.00019 21.8 0.3 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|289581919|ref|YP_003480385.1| - 9.4e-05 21.8 0.1 0.00012 21.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|289581919|ref|YP_003480385.1| - 0.0057 16.6 0.1 0.0087 16.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|289581919|ref|YP_003480385.1| - 0.013 15.0 0.2 0.029 14.0 0.1 1.7 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|289581919|ref|YP_003480385.1| - 0.014 14.6 0.1 0.044 13.0 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|289581919|ref|YP_003480385.1| - 0.017 14.6 0.1 0.033 13.7 0.1 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.27 gi|289581919|ref|YP_003480385.1| - 0.02 15.5 0.0 0.042 14.4 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|289581919|ref|YP_003480385.1| - 0.029 14.9 0.1 0.12 12.9 0.1 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain ApbA PF02558.16 gi|289581919|ref|YP_003480385.1| - 0.033 13.9 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|289581919|ref|YP_003480385.1| - 0.055 13.7 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NmrA PF05368.13 gi|289581919|ref|YP_003480385.1| - 0.065 12.8 0.4 0.097 12.2 0.4 1.3 1 0 0 1 1 1 0 NmrA-like family DFP PF04127.15 gi|289581919|ref|YP_003480385.1| - 0.1 12.4 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Shikimate_DH PF01488.20 gi|289581919|ref|YP_003480385.1| - 0.11 12.6 0.1 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|289581919|ref|YP_003480385.1| - 0.11 11.9 0.1 0.85 9.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AsnC_trans_reg PF01037.21 gi|289581920|ref|YP_003480386.1| - 6.7e-13 48.4 0.1 7.4e-13 48.3 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Fam20C PF06702.12 gi|289581921|ref|YP_003480387.1| - 0.057 13.2 0.0 0.081 12.7 0.0 1.1 1 0 0 1 1 1 0 Golgi casein kinase, C-terminal, Fam20 HRXXH PF13933.6 gi|289581921|ref|YP_003480387.1| - 0.2 11.2 0.2 0.28 10.7 0.2 1.2 1 0 0 1 1 1 0 Putative peptidase family POB3_N PF17292.2 gi|289581923|ref|YP_003480389.1| - 0.038 14.4 0.0 0.09 13.2 0.0 1.5 1 1 1 2 2 2 0 POB3-like N-terminal PH domain Cys_Met_Meta_PP PF01053.20 gi|289581925|ref|YP_003480391.1| - 1.1e-139 465.2 0.0 1.3e-139 465.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|289581925|ref|YP_003480391.1| - 2.4e-08 33.6 0.0 3.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|289581925|ref|YP_003480391.1| - 1.3e-05 24.7 0.3 7.6e-05 22.2 0.2 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|289581925|ref|YP_003480391.1| - 0.007 15.7 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|289581925|ref|YP_003480391.1| - 0.014 14.1 0.0 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|289581925|ref|YP_003480391.1| - 0.014 14.3 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V iPGM_N PF06415.13 gi|289581927|ref|YP_003480393.1| - 1.3e-79 266.6 0.7 1.8e-79 266.2 0.7 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|289581927|ref|YP_003480393.1| - 3.6e-73 246.0 0.1 4.2e-73 245.8 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|289581927|ref|YP_003480393.1| - 3.7e-08 33.3 1.3 1.3e-07 31.5 0.2 2.3 2 1 0 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|289581927|ref|YP_003480393.1| - 1.3e-05 24.7 0.1 3.4e-05 23.4 0.0 1.8 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|289581927|ref|YP_003480393.1| - 0.015 15.4 0.1 0.035 14.2 0.1 1.5 1 0 0 1 1 1 0 PglZ domain A2L_zn_ribbon PF08792.10 gi|289581928|ref|YP_003480394.1| - 0.0012 18.5 0.5 0.23 11.2 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain ADK_lid PF05191.14 gi|289581928|ref|YP_003480394.1| - 0.0091 16.0 3.1 0.51 10.4 0.3 2.1 1 1 0 2 2 2 2 Adenylate kinase, active site lid Lar_restr_allev PF14354.6 gi|289581928|ref|YP_003480394.1| - 0.029 14.7 2.3 2.3 8.7 2.2 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|289581928|ref|YP_003480394.1| - 0.042 13.4 4.5 0.78 9.3 0.2 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|289581928|ref|YP_003480394.1| - 0.11 12.6 3.9 0.2 11.8 3.9 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|289581928|ref|YP_003480394.1| - 0.13 12.7 3.3 10 6.8 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.6 gi|289581928|ref|YP_003480394.1| - 0.37 11.3 4.2 5.7 7.5 0.5 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2H2_4 PF13894.6 gi|289581928|ref|YP_003480394.1| - 0.62 11.0 2.5 33 5.7 0.5 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|289581928|ref|YP_003480394.1| - 3 7.5 7.9 12 5.6 0.5 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-LYAR PF08790.11 gi|289581928|ref|YP_003480394.1| - 8.6 6.4 7.9 3.9 7.5 0.7 2.3 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger NurA PF09376.10 gi|289581929|ref|YP_003480395.1| - 8.2e-17 61.7 0.0 1.1e-16 61.3 0.0 1.1 1 0 0 1 1 1 1 NurA domain DPM2 PF07297.12 gi|289581930|ref|YP_003480396.1| - 0.064 13.6 1.8 0.065 13.5 1.8 1.1 1 0 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) Membrane_bind PF14564.6 gi|289581931|ref|YP_003480397.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.5 1 1 0 1 1 1 0 Membrane binding MLTR_LBD PF17765.1 gi|289581932|ref|YP_003480398.1| - 0.091 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain 5_nucleotid_C PF02872.18 gi|289581933|ref|YP_003480399.1| - 7.4e-25 88.0 0.0 1.9e-24 86.7 0.0 1.7 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain YmdB PF13277.6 gi|289581933|ref|YP_003480399.1| - 0.049 13.0 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 YmdB-like protein Cohesin PF00963.18 gi|289581934|ref|YP_003480400.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 Cohesin domain HTH_20 PF12840.7 gi|289581936|ref|YP_003480402.1| - 0.0015 18.5 11.2 0.002 18.1 0.4 3.4 2 2 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289581936|ref|YP_003480402.1| - 0.0037 17.0 0.6 0.81 9.5 0.1 3.4 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289581936|ref|YP_003480402.1| - 0.031 14.1 5.1 3.2 7.7 0.0 3.5 4 0 0 4 4 4 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|289581936|ref|YP_003480402.1| - 0.049 13.4 0.0 2 8.2 0.0 2.5 2 0 0 2 2 2 0 LexA DNA binding domain Dimerisation PF08100.11 gi|289581936|ref|YP_003480402.1| - 0.062 13.3 1.3 1.1 9.3 0.0 2.8 3 0 0 3 3 3 0 Dimerisation domain Cohesin PF00963.18 gi|289581937|ref|YP_003480403.1| - 0.0061 16.8 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Cohesin domain FAM176 PF14851.6 gi|289581937|ref|YP_003480403.1| - 1.1 8.9 0.0 1.1 8.9 0.0 3.3 2 1 1 3 3 3 0 FAM176 family DUF87 PF01935.17 gi|289581938|ref|YP_003480404.1| - 1.7e-08 34.8 0.0 3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|289581938|ref|YP_003480404.1| - 1.2e-06 27.4 0.2 0.0016 17.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|289581938|ref|YP_003480404.1| - 0.0017 17.3 0.0 0.15 11.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|289581938|ref|YP_003480404.1| - 0.0086 15.0 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|289581938|ref|YP_003480404.1| - 0.011 16.0 0.0 0.1 12.9 0.0 2.4 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|289581938|ref|YP_003480404.1| - 0.013 14.6 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.15 gi|289581938|ref|YP_003480404.1| - 0.067 13.2 0.0 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|289581938|ref|YP_003480404.1| - 0.079 12.3 0.0 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|289581938|ref|YP_003480404.1| - 0.13 12.7 0.1 0.55 10.6 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain Alpha_GJ PF03229.13 gi|289581938|ref|YP_003480404.1| - 0.27 11.8 6.4 0.64 10.6 6.4 1.5 1 0 0 1 1 1 0 Alphavirus glycoprotein J VirJ PF06057.11 gi|289581939|ref|YP_003480405.1| - 0.0013 18.7 0.1 0.013 15.4 0.1 2.0 1 1 0 1 1 1 1 Bacterial virulence protein (VirJ) Peptidase_S15 PF02129.18 gi|289581939|ref|YP_003480405.1| - 0.0017 18.0 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.13 gi|289581939|ref|YP_003480405.1| - 0.023 14.4 0.0 0.03 14.0 0.0 1.1 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|289581939|ref|YP_003480405.1| - 0.041 13.7 0.1 0.098 12.5 0.1 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289581939|ref|YP_003480405.1| - 0.054 14.1 6.2 0.092 13.3 5.7 1.7 1 1 1 2 2 2 0 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|289581939|ref|YP_003480405.1| - 0.067 12.4 0.2 2.6 7.2 0.1 2.6 1 1 1 2 2 2 0 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|289581939|ref|YP_003480405.1| - 0.067 13.1 0.1 11 5.9 0.0 2.1 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|289581939|ref|YP_003480405.1| - 0.082 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family PspA_IM30 PF04012.12 gi|289581940|ref|YP_003480406.1| - 1.2e-32 113.3 29.9 1.2e-32 113.3 29.9 2.0 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.21 gi|289581940|ref|YP_003480406.1| - 0.0066 16.1 19.0 0.0066 16.1 19.0 4.0 2 1 1 4 4 3 1 Snf7 DUF1664 PF07889.12 gi|289581940|ref|YP_003480406.1| - 0.0082 16.2 4.2 0.0082 16.2 4.2 2.9 2 2 2 4 4 3 1 Protein of unknown function (DUF1664) DUF3535 PF12054.8 gi|289581940|ref|YP_003480406.1| - 0.0095 15.2 8.6 0.014 14.7 8.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3535) YabA PF06156.13 gi|289581940|ref|YP_003480406.1| - 0.011 16.3 23.4 0.11 13.2 5.7 3.3 1 1 2 3 3 3 0 Initiation control protein YabA BLOC1_2 PF10046.9 gi|289581940|ref|YP_003480406.1| - 0.028 14.7 21.2 0.23 11.8 0.4 3.7 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TA_inhibitor PF17574.2 gi|289581940|ref|YP_003480406.1| - 0.073 13.1 0.6 0.73 9.9 0.6 2.3 1 1 0 1 1 1 0 Inhibitor of toxin/antitoxin system (Gp4.5) Spc7 PF08317.11 gi|289581940|ref|YP_003480406.1| - 0.23 10.3 36.2 0.016 14.1 26.3 2.4 1 1 2 3 3 3 0 Spc7 kinetochore protein Prominin PF05478.11 gi|289581940|ref|YP_003480406.1| - 0.35 8.8 12.1 0.48 8.3 12.1 1.2 1 0 0 1 1 1 0 Prominin FOXP-CC PF16159.5 gi|289581940|ref|YP_003480406.1| - 0.4 11.3 9.9 0.64 10.7 0.2 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain DUF3450 PF11932.8 gi|289581940|ref|YP_003480406.1| - 0.78 9.0 31.1 5.9 6.1 13.2 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) FAM184 PF15665.5 gi|289581940|ref|YP_003480406.1| - 0.93 9.2 35.3 4.1 7.1 24.5 2.5 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B COG6 PF06419.11 gi|289581940|ref|YP_003480406.1| - 1.9 6.6 20.0 0.059 11.6 1.9 2.6 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 MerR-DNA-bind PF09278.11 gi|289581940|ref|YP_003480406.1| - 2 9.0 21.7 0.61 10.7 0.3 4.5 3 1 1 4 4 4 0 MerR, DNA binding DHR10 PF18595.1 gi|289581940|ref|YP_003480406.1| - 2.2 8.4 45.4 0.065 13.3 17.7 3.1 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain SHE3 PF17078.5 gi|289581940|ref|YP_003480406.1| - 2.3 7.9 27.9 17 5.0 26.9 2.7 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 KASH_CCD PF14662.6 gi|289581940|ref|YP_003480406.1| - 2.7 7.8 34.9 69 3.2 1.1 3.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF948 PF06103.11 gi|289581940|ref|YP_003480406.1| - 2.9 8.2 12.5 9.7 6.5 2.7 3.6 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF5082 PF16888.5 gi|289581940|ref|YP_003480406.1| - 2.9 8.2 25.4 0.34 11.2 9.9 3.4 2 2 0 3 3 2 0 Domain of unknown function (DUF5082) Exonuc_VII_L PF02601.15 gi|289581940|ref|YP_003480406.1| - 3.2 7.2 23.0 11 5.5 22.9 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit WDCP PF15390.6 gi|289581940|ref|YP_003480406.1| - 3.4 5.9 9.2 4.3 5.6 9.2 1.3 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family DUF4200 PF13863.6 gi|289581940|ref|YP_003480406.1| - 3.6 8.0 37.6 1.9 8.9 5.0 3.8 2 1 2 4 4 3 0 Domain of unknown function (DUF4200) DUF3584 PF12128.8 gi|289581940|ref|YP_003480406.1| - 4.2 4.7 40.9 0.32 8.5 32.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) RmuC PF02646.16 gi|289581940|ref|YP_003480406.1| - 4.2 6.4 23.3 3.8 6.6 0.4 3.2 1 1 2 3 3 3 0 RmuC family Baculo_PEP_C PF04513.12 gi|289581940|ref|YP_003480406.1| - 4.7 7.3 11.4 15 5.6 0.9 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2786 PF10979.8 gi|289581940|ref|YP_003480406.1| - 5.7 6.9 0.0 5.7 6.9 0.0 4.1 4 0 0 4 4 3 0 Protein of unknown function (DUF2786) ALMT PF11744.8 gi|289581940|ref|YP_003480406.1| - 5.8 5.6 13.1 8 5.2 13.1 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter GAS PF13851.6 gi|289581940|ref|YP_003480406.1| - 5.9 6.2 31.7 63 2.8 31.6 2.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding FapA PF03961.13 gi|289581940|ref|YP_003480406.1| - 6.3 5.3 24.4 1.7 7.1 13.2 2.5 1 1 1 2 2 2 0 Flagellar Assembly Protein A ERM PF00769.19 gi|289581940|ref|YP_003480406.1| - 6.3 6.5 45.5 16 5.2 45.5 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family AAA_13 PF13166.6 gi|289581940|ref|YP_003480406.1| - 7.8 5.0 27.4 6.1 5.4 25.6 1.7 1 1 0 1 1 1 0 AAA domain YlqD PF11068.8 gi|289581940|ref|YP_003480406.1| - 8.8 6.7 31.3 0.24 11.8 13.1 3.2 1 1 1 3 3 3 0 YlqD protein CENP-F_leu_zip PF10473.9 gi|289581940|ref|YP_003480406.1| - 9.6 6.2 41.1 3.3 7.7 17.9 3.5 2 1 3 5 5 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|289581940|ref|YP_003480406.1| - 9.9 4.9 34.9 15 4.4 31.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF3810 PF12725.7 gi|289581942|ref|YP_003480408.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) PrmC_N PF17827.1 gi|289581942|ref|YP_003480408.1| - 2 9.1 6.2 20 5.9 4.4 2.5 1 1 1 2 2 2 0 PrmC N-terminal domain E1-E2_ATPase PF00122.20 gi|289581942|ref|YP_003480408.1| - 3.9 7.0 5.8 0.57 9.7 1.5 1.7 2 0 0 2 2 2 0 E1-E2 ATPase YtxH PF12732.7 gi|289581943|ref|YP_003480409.1| - 0.072 13.6 0.0 0.31 11.6 0.0 2.1 1 1 1 2 2 2 0 YtxH-like protein Trypsin PF00089.26 gi|289581943|ref|YP_003480409.1| - 0.14 11.9 0.0 0.37 10.5 0.0 1.6 2 0 0 2 2 2 0 Trypsin adh_short_C2 PF13561.6 gi|289581944|ref|YP_003480410.1| - 2.4e-62 210.5 0.5 4.3e-62 209.7 0.5 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289581944|ref|YP_003480410.1| - 9.1e-58 194.9 0.0 1.2e-57 194.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289581944|ref|YP_003480410.1| - 1.6e-11 44.5 0.0 2.4e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289581944|ref|YP_003480410.1| - 5.2e-08 32.7 0.0 1.4e-07 31.2 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|289581944|ref|YP_003480410.1| - 7.5e-06 26.0 0.7 6.5e-05 22.9 0.7 2.0 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|289581944|ref|YP_003480410.1| - 0.0085 16.4 1.0 0.44 10.8 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|289581944|ref|YP_003480410.1| - 0.02 14.8 0.1 0.04 13.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1776 PF08643.10 gi|289581944|ref|YP_003480410.1| - 0.056 12.8 0.0 0.11 11.8 0.0 1.6 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) Cupin_2 PF07883.11 gi|289581946|ref|YP_003480412.1| - 3.1e-12 46.0 0.4 3.7e-12 45.8 0.4 1.1 1 0 0 1 1 1 1 Cupin domain CENP-C_C PF11699.8 gi|289581946|ref|YP_003480412.1| - 0.006 16.8 0.0 0.0081 16.4 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Pirin_C PF05726.13 gi|289581946|ref|YP_003480412.1| - 0.034 14.5 0.0 0.04 14.3 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Ppnp PF06865.11 gi|289581946|ref|YP_003480412.1| - 0.036 14.5 0.0 0.048 14.1 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Cupin_3 PF05899.12 gi|289581946|ref|YP_003480412.1| - 0.038 13.7 0.1 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AftA_C PF12249.8 gi|289581946|ref|YP_003480412.1| - 0.046 13.4 0.1 0.062 13.0 0.1 1.1 1 0 0 1 1 1 0 Arabinofuranosyltransferase A C terminal HutD PF05962.11 gi|289581946|ref|YP_003480412.1| - 0.096 12.6 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 HutD AAA_33 PF13671.6 gi|289581947|ref|YP_003480413.1| - 4.2e-12 46.4 1.4 4.2e-12 46.4 1.4 2.7 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|289581947|ref|YP_003480413.1| - 4.6e-07 29.6 0.1 4.6e-07 29.6 0.1 2.2 2 1 0 2 2 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|289581947|ref|YP_003480413.1| - 1e-06 29.3 0.4 7.4e-05 23.3 0.4 2.2 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|289581947|ref|YP_003480413.1| - 8.7e-06 25.7 3.6 0.0014 18.5 2.5 2.2 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein AAA_14 PF13173.6 gi|289581947|ref|YP_003480413.1| - 1.2e-05 25.4 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|289581947|ref|YP_003480413.1| - 9.9e-05 21.7 0.7 0.0013 18.1 0.1 2.0 1 1 1 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|289581947|ref|YP_003480413.1| - 0.00012 22.5 0.0 0.00018 21.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581947|ref|YP_003480413.1| - 0.00019 21.7 0.0 0.00042 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|289581947|ref|YP_003480413.1| - 0.0025 17.8 0.1 0.2 11.5 0.1 2.2 1 1 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 gi|289581947|ref|YP_003480413.1| - 0.0028 18.1 0.2 1.8 9.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|289581947|ref|YP_003480413.1| - 0.003 17.6 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Glyco_tran_WecB PF03808.13 gi|289581947|ref|YP_003480413.1| - 0.0037 17.2 0.0 0.0052 16.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family AAA_23 PF13476.6 gi|289581947|ref|YP_003480413.1| - 0.0042 17.6 0.3 0.016 15.7 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|289581947|ref|YP_003480413.1| - 0.0047 16.7 1.0 0.0084 15.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain dNK PF01712.19 gi|289581947|ref|YP_003480413.1| - 0.0065 16.3 0.0 3.5 7.4 0.0 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|289581947|ref|YP_003480413.1| - 0.0075 16.5 1.8 0.022 15.0 0.2 2.3 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|289581947|ref|YP_003480413.1| - 0.02 15.3 0.0 0.034 14.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|289581947|ref|YP_003480413.1| - 0.023 14.1 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|289581947|ref|YP_003480413.1| - 0.024 14.4 0.0 0.06 13.1 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|289581947|ref|YP_003480413.1| - 0.028 14.8 0.0 0.061 13.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|289581947|ref|YP_003480413.1| - 0.031 14.0 1.2 0.14 11.9 0.0 2.3 2 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family DnaB_C PF03796.15 gi|289581947|ref|YP_003480413.1| - 0.04 13.3 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Roc PF08477.13 gi|289581947|ref|YP_003480413.1| - 0.065 13.5 0.7 0.2 11.9 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase 6PF2K PF01591.18 gi|289581947|ref|YP_003480413.1| - 0.066 12.5 0.0 0.17 11.2 0.0 1.6 1 1 1 2 2 2 0 6-phosphofructo-2-kinase Cytidylate_kin PF02224.18 gi|289581947|ref|YP_003480413.1| - 0.076 12.7 2.8 1.7 8.3 0.0 2.5 1 1 1 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|289581947|ref|YP_003480413.1| - 0.14 12.1 0.0 0.27 11.1 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain MID_MedPIWI PF18296.1 gi|289581947|ref|YP_003480413.1| - 0.43 10.3 2.6 0.59 9.9 2.6 1.1 1 0 0 1 1 1 0 MID domain of medPIWI TAT_signal PF10518.9 gi|289581948|ref|YP_003480414.1| - 0.00012 21.7 1.3 0.00023 20.9 1.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.6 gi|289581949|ref|YP_003480415.1| - 3e-41 141.4 0.3 4.5e-41 140.8 0.3 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|289581949|ref|YP_003480415.1| - 8.5e-13 48.5 0.0 2.8e-12 46.9 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|289581949|ref|YP_003480415.1| - 0.0014 17.8 0.1 0.0026 17.0 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus ThiP_synth PF10120.9 gi|289581949|ref|YP_003480415.1| - 0.028 14.1 0.3 0.089 12.4 0.1 1.9 2 0 0 2 2 2 0 Thiamine-phosphate synthase DUF1611 PF07755.11 gi|289581950|ref|YP_003480416.1| - 5.5e-69 231.5 0.7 7.5e-69 231.0 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|289581950|ref|YP_003480416.1| - 6.8e-32 109.6 0.1 1.2e-30 105.6 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain acVLRF1 PF18859.1 gi|289581951|ref|YP_003480417.1| - 2e-37 128.4 0.6 2e-37 128.4 0.6 3.3 2 1 0 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|289581951|ref|YP_003480417.1| - 1.6e-08 34.9 0.1 1.6e-08 34.9 0.1 2.4 3 0 0 3 3 1 1 Bacterial archaeo-eukaryotic release factor family 10 DUF3450 PF11932.8 gi|289581951|ref|YP_003480417.1| - 0.0049 16.2 4.6 0.011 15.0 4.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) eRF1_2 PF03464.15 gi|289581951|ref|YP_003480417.1| - 0.005 17.1 0.0 0.0085 16.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 Tropomyosin_1 PF12718.7 gi|289581951|ref|YP_003480417.1| - 0.021 15.0 9.9 0.04 14.1 9.9 1.4 1 0 0 1 1 1 0 Tropomyosin like GAS PF13851.6 gi|289581951|ref|YP_003480417.1| - 0.026 13.9 1.0 0.047 13.0 1.0 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Transposase_24 PF03004.14 gi|289581951|ref|YP_003480417.1| - 0.03 14.4 1.0 0.13 12.4 0.7 2.1 1 1 1 2 2 2 0 Plant transposase (Ptta/En/Spm family) Paralemmin PF03285.15 gi|289581951|ref|YP_003480417.1| - 0.031 13.9 1.3 0.031 13.9 1.3 2.0 1 1 1 2 2 2 0 Paralemmin Jnk-SapK_ap_N PF09744.9 gi|289581951|ref|YP_003480417.1| - 0.033 14.4 6.4 0.062 13.5 6.4 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|289581951|ref|YP_003480417.1| - 0.036 14.2 5.7 0.069 13.2 5.7 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Tropomyosin PF00261.20 gi|289581951|ref|YP_003480417.1| - 0.045 13.1 10.8 0.073 12.4 10.8 1.3 1 0 0 1 1 1 0 Tropomyosin bZIP_2 PF07716.15 gi|289581951|ref|YP_003480417.1| - 0.046 13.8 6.9 1.4 9.1 1.4 2.5 2 0 0 2 2 2 0 Basic region leucine zipper Fmp27_WPPW PF10359.9 gi|289581951|ref|YP_003480417.1| - 0.07 12.0 2.7 0.14 10.9 2.7 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Atg14 PF10186.9 gi|289581951|ref|YP_003480417.1| - 0.071 12.2 0.3 0.095 11.8 0.3 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Not3 PF04065.15 gi|289581951|ref|YP_003480417.1| - 0.072 12.5 0.7 0.11 11.9 0.7 1.3 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Nup188_C PF18378.1 gi|289581951|ref|YP_003480417.1| - 0.095 11.5 2.5 0.14 11.0 2.5 1.1 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain DivIC PF04977.15 gi|289581951|ref|YP_003480417.1| - 0.15 11.8 9.3 0.85 9.4 2.1 2.5 1 1 1 2 2 2 0 Septum formation initiator DUF1664 PF07889.12 gi|289581951|ref|YP_003480417.1| - 0.17 11.9 0.5 0.35 10.9 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.8 gi|289581951|ref|YP_003480417.1| - 0.21 11.6 7.4 2.7 8.0 7.2 2.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DinB_2 PF12867.7 gi|289581951|ref|YP_003480417.1| - 0.35 11.4 9.4 2.7 8.5 5.0 2.8 2 1 0 2 2 2 0 DinB superfamily AAA_13 PF13166.6 gi|289581951|ref|YP_003480417.1| - 0.36 9.4 1.6 0.53 8.9 1.6 1.1 1 0 0 1 1 1 0 AAA domain Troponin PF00992.20 gi|289581951|ref|YP_003480417.1| - 0.39 11.0 6.7 0.8 10.0 6.7 1.5 1 0 0 1 1 1 0 Troponin CLZ PF16526.5 gi|289581951|ref|YP_003480417.1| - 0.57 10.6 7.6 0.86 10.0 1.8 2.8 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CENP-F_leu_zip PF10473.9 gi|289581951|ref|YP_003480417.1| - 0.57 10.2 9.7 0.22 11.6 1.8 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cep57_MT_bd PF06657.13 gi|289581951|ref|YP_003480417.1| - 0.69 10.4 7.2 3.7 8.1 4.7 3.1 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF1192 PF06698.11 gi|289581951|ref|YP_003480417.1| - 0.78 9.8 16.5 0.1 12.7 1.5 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) ABC_tran_CTD PF16326.5 gi|289581951|ref|YP_003480417.1| - 0.88 9.9 14.4 2.1 8.7 5.1 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain Prefoldin_2 PF01920.20 gi|289581951|ref|YP_003480417.1| - 1.2 9.1 5.4 2 8.4 0.4 2.4 1 1 1 2 2 2 0 Prefoldin subunit APG6_N PF17675.1 gi|289581951|ref|YP_003480417.1| - 1.4 9.5 12.7 5.8 7.5 12.4 2.1 2 1 0 2 2 2 0 Apg6 coiled-coil region Spc7 PF08317.11 gi|289581951|ref|YP_003480417.1| - 2 7.2 6.0 2.9 6.7 6.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Prefoldin PF02996.17 gi|289581951|ref|YP_003480417.1| - 3.7 7.5 5.9 16 5.5 0.4 3.1 2 1 1 3 3 3 0 Prefoldin subunit CCDC106 PF15794.5 gi|289581951|ref|YP_003480417.1| - 5.1 6.7 9.5 0.14 11.8 1.6 2.0 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 106 Spc24 PF08286.11 gi|289581951|ref|YP_003480417.1| - 6.8 7.0 6.7 4.8 7.5 1.8 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Spc7 PF08317.11 gi|289581953|ref|YP_003480419.1| - 0.12 11.3 0.4 0.17 10.8 0.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 gi|289581953|ref|YP_003480419.1| - 1.4 9.2 4.7 0.64 10.3 2.0 1.9 2 0 0 2 2 2 0 ABC transporter C-terminal domain S_4TM PF18159.1 gi|289581954|ref|YP_003480420.1| - 6.9 5.9 6.4 0.44 9.8 1.2 1.5 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain PadR PF03551.14 gi|289581955|ref|YP_003480421.1| - 3e-18 65.5 1.6 3.7e-18 65.3 1.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|289581955|ref|YP_003480421.1| - 0.0038 17.0 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|289581955|ref|YP_003480421.1| - 0.0053 16.7 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|289581955|ref|YP_003480421.1| - 0.023 15.2 0.2 0.028 14.9 0.2 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|289581955|ref|YP_003480421.1| - 0.056 13.6 0.0 0.061 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|289581955|ref|YP_003480421.1| - 0.082 12.8 0.3 6.5 6.7 0.0 2.4 3 0 0 3 3 3 0 MarR family DUF4364 PF14277.6 gi|289581955|ref|YP_003480421.1| - 0.086 12.6 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2172 PF09940.9 gi|289581956|ref|YP_003480422.1| - 0.011 16.1 0.1 0.012 16.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) NMT PF01233.19 gi|289581956|ref|YP_003480422.1| - 0.078 12.8 0.4 0.081 12.8 0.4 1.0 1 0 0 1 1 1 0 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain LPG_synthase_TM PF03706.13 gi|289581957|ref|YP_003480423.1| - 6.6e-28 98.1 44.2 7.7e-28 97.9 44.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region HypA PF01155.19 gi|289581958|ref|YP_003480424.1| - 0.0062 16.5 0.9 0.01 15.8 0.4 1.6 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2752 PF10825.8 gi|289581958|ref|YP_003480424.1| - 0.008 16.2 0.2 0.016 15.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2752) zf-IS66 PF13005.7 gi|289581958|ref|YP_003480424.1| - 0.02 15.3 4.4 0.17 12.3 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|289581958|ref|YP_003480424.1| - 0.033 14.2 0.2 0.061 13.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289581958|ref|YP_003480424.1| - 0.078 13.1 0.5 0.18 12.0 0.5 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|289581958|ref|YP_003480424.1| - 0.48 10.0 3.0 1.1 8.8 1.9 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|289581958|ref|YP_003480424.1| - 1.2 9.3 5.1 0.89 9.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1451 PF07295.11 gi|289581958|ref|YP_003480424.1| - 1.4 8.9 5.0 0.38 10.8 0.3 2.4 3 0 0 3 3 3 0 Zinc-ribbon containing domain THF_DHG_CYH_C PF02882.19 gi|289581959|ref|YP_003480425.1| - 5.9e-68 227.2 0.8 8.1e-68 226.8 0.8 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|289581959|ref|YP_003480425.1| - 1.9e-37 128.1 0.1 3.1e-37 127.4 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Aldo_ket_red PF00248.21 gi|289581960|ref|YP_003480426.1| - 2.3e-75 253.5 0.0 2.8e-75 253.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family UbiA PF01040.18 gi|289581961|ref|YP_003480427.1| - 2.1e-55 187.8 26.9 2.1e-55 187.8 26.9 2.6 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|289581961|ref|YP_003480427.1| - 3.3e-06 26.4 17.2 0.00024 20.3 0.7 3.7 3 2 1 4 4 4 2 Cytochrome oxidase assembly protein DUF485 PF04341.12 gi|289581961|ref|YP_003480427.1| - 0.33 10.9 0.0 0.33 10.9 0.0 4.2 3 2 1 4 4 4 0 Protein of unknown function, DUF485 DUF3267 PF11667.8 gi|289581963|ref|YP_003480429.1| - 1.9e-26 92.4 1.2 1.9e-26 92.4 1.2 2.3 2 1 1 3 3 3 1 Putative zincin peptidase Peptidase_M50 PF02163.22 gi|289581963|ref|YP_003480429.1| - 0.021 14.1 0.2 0.044 13.1 0.2 1.5 1 0 0 1 1 1 0 Peptidase family M50 PadR PF03551.14 gi|289581964|ref|YP_003480430.1| - 1.2e-06 28.4 0.2 1.8e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|289581964|ref|YP_003480430.1| - 0.024 14.7 0.1 0.19 11.8 0.1 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DUF1495 PF07381.11 gi|289581964|ref|YP_003480430.1| - 0.03 14.1 0.0 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|289581964|ref|YP_003480430.1| - 0.032 14.0 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|289581964|ref|YP_003480430.1| - 0.06 13.3 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Acyl-CoA_dh_1 PF00441.24 gi|289581966|ref|YP_003480432.1| - 2.2e-49 167.5 0.4 3.2e-49 167.0 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289581966|ref|YP_003480432.1| - 1.9e-35 122.0 0.5 4e-35 120.9 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289581966|ref|YP_003480432.1| - 1.1e-26 93.6 0.2 1.7e-26 93.1 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289581966|ref|YP_003480432.1| - 5e-25 87.5 0.0 9.1e-25 86.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain NAD_binding_10 PF13460.6 gi|289581967|ref|YP_003480433.1| - 2.3e-47 161.3 0.6 2.7e-47 161.1 0.6 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|289581967|ref|YP_003480433.1| - 1.2e-16 61.0 0.0 1.5e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|289581967|ref|YP_003480433.1| - 3.3e-11 43.1 0.0 7.7e-11 41.9 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289581967|ref|YP_003480433.1| - 2.3e-07 30.1 0.0 2.9e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 gi|289581967|ref|YP_003480433.1| - 1.5e-05 25.0 0.1 0.00041 20.3 0.3 2.1 2 0 0 2 2 2 1 KR domain RmlD_sub_bind PF04321.17 gi|289581967|ref|YP_003480433.1| - 0.00014 21.1 0.9 0.00033 19.8 0.9 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|289581967|ref|YP_003480433.1| - 0.00096 18.4 0.0 0.23 10.6 0.0 2.1 1 1 0 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|289581967|ref|YP_003480433.1| - 0.0047 16.4 0.1 0.0069 15.8 0.1 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_3 PF03447.16 gi|289581967|ref|YP_003480433.1| - 0.0072 17.0 0.1 0.013 16.1 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289581967|ref|YP_003480433.1| - 0.023 15.0 0.6 0.055 13.7 0.4 1.8 1 1 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|289581967|ref|YP_003480433.1| - 0.024 14.8 0.7 0.042 14.0 0.7 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus SQS_PSY PF00494.19 gi|289581968|ref|YP_003480434.1| - 4e-53 180.6 1.2 4.6e-53 180.4 0.8 1.3 1 1 0 1 1 1 1 Squalene/phytoene synthase HetR_C PF18460.1 gi|289581968|ref|YP_003480434.1| - 0.0076 16.2 0.1 0.039 13.9 0.1 2.2 1 0 0 1 1 1 1 Heterocyst differentiation regulator C-terminal Hood domain Arg_decarbox_C PF17944.1 gi|289581968|ref|YP_003480434.1| - 0.017 15.6 0.0 0.13 12.8 0.0 2.4 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension MucBP PF06458.12 gi|289581969|ref|YP_003480435.1| - 1.3 10.1 4.9 2.4 9.2 3.1 2.1 2 0 0 2 2 2 0 MucBP domain DUF4332 PF14229.6 gi|289581970|ref|YP_003480436.1| - 0.0089 16.3 0.1 0.021 15.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH_5 PF14520.6 gi|289581970|ref|YP_003480436.1| - 0.011 16.4 0.2 0.026 15.1 0.2 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|289581970|ref|YP_003480436.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DeoC PF01791.9 gi|289581971|ref|YP_003480437.1| - 4.3e-42 144.3 0.0 5e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase FBPase PF00316.20 gi|289581972|ref|YP_003480438.1| - 2.8e-26 92.2 0.0 4.6e-26 91.5 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|289581972|ref|YP_003480438.1| - 8.3e-07 28.8 0.2 1.5e-06 27.9 0.1 1.5 2 0 0 2 2 2 1 Inositol monophosphatase family OrfB_Zn_ribbon PF07282.11 gi|289581973|ref|YP_003480439.1| - 4.7e-20 71.3 0.2 4.7e-20 71.3 0.2 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289581973|ref|YP_003480439.1| - 2.4e-19 69.7 0.1 5.4e-19 68.6 0.1 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|289581973|ref|YP_003480439.1| - 4.9e-10 38.7 0.2 1e-09 37.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|289581973|ref|YP_003480439.1| - 0.1 12.7 3.1 0.075 13.1 1.2 1.9 2 0 0 2 2 2 0 Double zinc ribbon DUF4618 PF15397.6 gi|289581973|ref|YP_003480439.1| - 0.14 11.6 0.7 0.93 8.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Clr5 PF14420.6 gi|289581973|ref|YP_003480439.1| - 0.14 12.4 0.1 0.86 9.9 0.0 2.2 2 0 0 2 2 2 0 Clr5 domain EzrA PF06160.12 gi|289581973|ref|YP_003480439.1| - 0.17 10.0 0.0 0.25 9.5 0.0 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Zn-ribbon_8 PF09723.10 gi|289581973|ref|YP_003480439.1| - 0.36 11.0 6.4 37 4.5 6.4 2.5 1 1 0 1 1 1 0 Zinc ribbon domain Med9 PF07544.13 gi|289581973|ref|YP_003480439.1| - 0.39 10.8 3.6 0.97 9.6 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Rubredoxin_2 PF18073.1 gi|289581973|ref|YP_003480439.1| - 0.45 10.3 2.1 1.6 8.5 2.2 2.0 1 1 0 1 1 1 0 Rubredoxin metal binding domain Ribosomal_L37e PF01907.19 gi|289581973|ref|YP_003480439.1| - 1.6 9.0 5.4 11 6.2 1.9 3.1 2 1 1 3 3 3 0 Ribosomal protein L37e CcdA PF07362.12 gi|289581974|ref|YP_003480440.1| - 0.043 14.2 0.1 0.05 14.0 0.1 1.1 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA DUF2892 PF11127.8 gi|289581975|ref|YP_003480441.1| - 0.41 10.7 4.6 0.54 10.3 4.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Phage_holin_Dp1 PF16938.5 gi|289581977|ref|YP_003480443.1| - 0.062 13.5 1.1 6.2 7.1 0.1 2.5 1 1 1 2 2 2 0 Putative phage holin Dp-1 MaoC_dehydratas PF01575.19 gi|289581978|ref|YP_003480444.1| - 1.3e-24 86.1 0.2 1.7e-24 85.8 0.2 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|289581978|ref|YP_003480444.1| - 2.4e-06 27.7 0.3 6.6e-06 26.3 0.3 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|289581978|ref|YP_003480444.1| - 0.017 15.5 0.6 0.1 13.0 0.3 2.3 2 1 0 2 2 2 0 Thioesterase superfamily Aldedh PF00171.22 gi|289581979|ref|YP_003480445.1| - 1.1e-143 479.1 0.0 1.3e-143 478.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2336 PF10098.9 gi|289581979|ref|YP_003480445.1| - 0.069 12.6 0.4 0.19 11.2 0.4 1.7 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) baeRF_family2 PF18844.1 gi|289581979|ref|YP_003480445.1| - 0.15 12.1 4.6 0.98 9.5 0.3 3.0 3 0 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 2 ELFV_dehydrog PF00208.21 gi|289581980|ref|YP_003480446.1| - 3.8e-70 236.4 0.0 5.4e-70 235.9 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|289581980|ref|YP_003480446.1| - 1.2e-54 183.7 0.0 2e-54 183.0 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|289581980|ref|YP_003480446.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Cdc6_C PF09079.11 gi|289581981|ref|YP_003480447.1| - 2.6e-15 56.1 0.3 8.5e-15 54.5 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|289581981|ref|YP_003480447.1| - 7.9e-12 45.9 0.1 2.1e-11 44.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289581981|ref|YP_003480447.1| - 2.7e-11 43.9 0.0 7.3e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|289581981|ref|YP_003480447.1| - 4.9e-07 30.2 0.1 1.7e-06 28.5 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|289581981|ref|YP_003480447.1| - 1.6e-06 27.7 0.0 2.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|289581981|ref|YP_003480447.1| - 2e-06 27.8 0.0 3.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|289581981|ref|YP_003480447.1| - 2.6e-06 27.5 0.1 7.5e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|289581981|ref|YP_003480447.1| - 3.4e-05 23.1 0.0 8.4e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|289581981|ref|YP_003480447.1| - 0.00013 21.7 0.2 0.00028 20.6 0.0 1.6 2 0 0 2 2 1 1 Sigma-54 interaction domain DUF2791 PF10923.8 gi|289581981|ref|YP_003480447.1| - 0.0051 15.7 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_32 PF13654.6 gi|289581981|ref|YP_003480447.1| - 0.0054 15.6 0.9 0.2 10.4 0.6 2.1 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|289581981|ref|YP_003480447.1| - 0.0055 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|289581981|ref|YP_003480447.1| - 0.0083 16.1 0.0 0.019 14.9 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|289581981|ref|YP_003480447.1| - 0.02 14.1 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|289581981|ref|YP_003480447.1| - 0.021 14.3 0.3 0.9 9.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein CBFD_NFYB_HMF PF00808.23 gi|289581981|ref|YP_003480447.1| - 0.026 14.8 0.1 0.099 12.9 0.1 2.0 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone AAA_7 PF12775.7 gi|289581981|ref|YP_003480447.1| - 0.046 13.2 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|289581981|ref|YP_003480447.1| - 0.064 13.6 0.4 0.14 12.5 0.4 1.6 1 0 0 1 1 1 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|289581981|ref|YP_003480447.1| - 0.068 13.6 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.9 gi|289581981|ref|YP_003480447.1| - 0.078 12.2 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|289581981|ref|YP_003480447.1| - 0.083 13.4 0.2 0.41 11.2 0.2 2.2 1 1 0 1 1 1 0 ABC transporter Bac_DnaA PF00308.18 gi|289581981|ref|YP_003480447.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein HpcH_HpaI PF03328.14 gi|289581982|ref|YP_003480448.1| - 5e-49 166.4 6.4 3.6e-34 117.8 0.1 2.2 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|289581982|ref|YP_003480448.1| - 7.1e-12 45.1 0.2 3.8e-08 32.9 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ELFV_dehydrog PF00208.21 gi|289581983|ref|YP_003480449.1| - 7e-73 245.3 1.2 9.3e-73 244.9 1.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|289581983|ref|YP_003480449.1| - 7.8e-53 177.8 0.0 1.7e-52 176.7 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.19 gi|289581983|ref|YP_003480449.1| - 0.002 16.9 0.0 0.003 16.4 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.19 gi|289581983|ref|YP_003480449.1| - 0.0058 16.0 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCV_NS5a_C PF12941.7 gi|289581983|ref|YP_003480449.1| - 0.033 14.1 0.0 6 6.6 0.0 2.2 2 0 0 2 2 2 0 HCV NS5a protein C-terminal region DUF2062 PF09835.9 gi|289581984|ref|YP_003480450.1| - 5.9e-15 55.4 4.3 7.4e-15 55.1 4.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) P2X_receptor PF00864.19 gi|289581984|ref|YP_003480450.1| - 0.23 10.5 0.2 0.28 10.2 0.2 1.1 1 0 0 1 1 1 0 ATP P2X receptor DUF3082 PF11282.8 gi|289581984|ref|YP_003480450.1| - 2.5 8.4 8.7 1.2 9.5 0.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3082) HupF_HypC PF01455.18 gi|289581985|ref|YP_003480451.1| - 0.019 15.1 0.1 0.045 13.9 0.1 1.7 1 0 0 1 1 1 0 HupF/HypC family RIO1 PF01163.22 gi|289581987|ref|YP_003480453.1| - 6e-11 42.3 0.0 1.1e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|289581987|ref|YP_003480453.1| - 1.7e-06 28.1 2.8 0.0094 15.9 0.2 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|289581987|ref|YP_003480453.1| - 1.8e-05 24.2 0.1 4e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|289581987|ref|YP_003480453.1| - 6.7e-05 22.4 0.0 9.2e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.14 gi|289581987|ref|YP_003480453.1| - 0.00074 19.0 0.0 0.0016 17.8 0.0 1.7 2 0 0 2 2 2 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase Fructosamin_kin PF03881.14 gi|289581987|ref|YP_003480453.1| - 0.0038 16.5 0.4 0.73 9.0 0.0 2.4 2 1 1 3 3 3 2 Fructosamine kinase Kinase-PolyVal PF18762.1 gi|289581987|ref|YP_003480453.1| - 0.011 15.7 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins SHOCT PF09851.9 gi|289581988|ref|YP_003480454.1| - 0.0048 16.6 2.6 0.0069 16.1 2.6 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|289581988|ref|YP_003480454.1| - 0.05 13.7 2.1 0.05 13.7 2.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1707) Aldedh PF00171.22 gi|289581989|ref|YP_003480455.1| - 1e-143 479.2 0.0 1.3e-143 478.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|289581989|ref|YP_003480455.1| - 0.05 13.6 0.7 0.098 12.7 0.7 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Polyketide_cyc2 PF10604.9 gi|289581990|ref|YP_003480456.1| - 1.1e-17 64.6 1.8 1.3e-17 64.4 1.8 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|289581990|ref|YP_003480456.1| - 2.6e-06 27.3 0.0 3.2e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|289581990|ref|YP_003480456.1| - 1.2e-05 25.5 0.2 1.4e-05 25.3 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.12 gi|289581991|ref|YP_003480457.1| - 0.0052 17.1 0.0 0.0068 16.8 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|289581991|ref|YP_003480457.1| - 0.017 15.1 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus DUF4131 PF13567.6 gi|289581992|ref|YP_003480458.1| - 0.21 11.2 2.6 0.22 11.2 2.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Rax2 PF12768.7 gi|289581992|ref|YP_003480458.1| - 0.81 9.1 2.4 1.1 8.7 2.4 1.2 1 0 0 1 1 1 0 Cortical protein marker for cell polarity PhoU PF01895.19 gi|289581993|ref|YP_003480459.1| - 1.1e-14 54.7 6.6 2.1e-11 44.1 0.0 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|289581993|ref|YP_003480459.1| - 5.3e-08 32.6 0.0 1.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|289581994|ref|YP_003480460.1| - 6.7e-38 130.5 0.1 4.3e-23 81.9 0.0 2.1 2 0 0 2 2 2 2 ATP-NAD kinase DAGK_cat PF00781.24 gi|289581994|ref|YP_003480460.1| - 1.8e-05 24.3 0.1 7.9e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Med3 PF11593.8 gi|289581994|ref|YP_003480460.1| - 0.095 11.9 6.0 0.15 11.3 6.0 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal ARHGEF5_35 PF15441.6 gi|289581994|ref|YP_003480460.1| - 0.3 10.0 8.8 0.61 9.0 8.8 1.4 1 0 0 1 1 1 0 Rho guanine nucleotide exchange factor 5/35 TPX2 PF06886.11 gi|289581994|ref|YP_003480460.1| - 0.43 10.8 8.7 0.13 12.5 5.4 1.8 2 0 0 2 2 2 0 Targeting protein for Xklp2 (TPX2) MoCF_biosynth PF00994.24 gi|289581996|ref|YP_003480462.1| - 8.9e-34 116.2 1.2 9.2e-34 116.2 0.2 1.6 2 0 0 2 2 2 1 Probable molybdopterin binding domain HTH_20 PF12840.7 gi|289581997|ref|YP_003480463.1| - 1.5e-06 28.1 0.0 2.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 gi|289581997|ref|YP_003480463.1| - 0.00018 21.2 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain TrmB PF01978.19 gi|289581997|ref|YP_003480463.1| - 0.00029 20.7 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|289581997|ref|YP_003480463.1| - 0.00043 19.8 0.0 0.00097 18.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|289581997|ref|YP_003480463.1| - 0.047 13.7 0.0 0.08 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PTPS PF01242.19 gi|289581998|ref|YP_003480464.1| - 1.1e-22 80.2 0.1 1.6e-22 79.8 0.1 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GYD PF08734.11 gi|289581998|ref|YP_003480464.1| - 0.055 13.4 0.1 0.088 12.8 0.1 1.4 1 0 0 1 1 1 0 GYD domain Radical_SAM PF04055.21 gi|289581999|ref|YP_003480465.1| - 5.2e-21 75.7 0.1 4.2e-20 72.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|289581999|ref|YP_003480465.1| - 2e-13 50.5 0.0 3.2e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|289581999|ref|YP_003480465.1| - 5.7e-11 42.8 0.0 9.1e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DJ-1_PfpI PF01965.24 gi|289581999|ref|YP_003480465.1| - 0.011 15.5 0.0 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 DJ-1/PfpI family TP_methylase PF00590.20 gi|289581999|ref|YP_003480465.1| - 0.021 14.8 0.2 0.089 12.7 0.0 1.9 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.13 gi|289582000|ref|YP_003480466.1| - 6.1e-74 248.0 0.0 7e-74 247.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|289582000|ref|YP_003480466.1| - 8.8e-05 22.2 0.0 0.00031 20.4 0.0 1.9 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|289582000|ref|YP_003480466.1| - 0.0001 21.2 0.0 0.00014 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|289582000|ref|YP_003480466.1| - 0.001 18.8 0.3 0.0014 18.4 0.3 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|289582000|ref|YP_003480466.1| - 0.02 14.0 0.0 0.035 13.2 0.0 1.4 1 1 0 1 1 1 0 NAD synthase LAB_N PF07578.11 gi|289582001|ref|YP_003480467.1| - 0.022 14.9 0.6 0.065 13.3 0.0 1.9 2 0 0 2 2 2 0 Lipid A Biosynthesis N-terminal domain Fe-ADH PF00465.19 gi|289582002|ref|YP_003480468.1| - 3.9e-65 220.0 0.4 5.1e-65 219.7 0.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|289582002|ref|YP_003480468.1| - 5.2e-08 32.9 0.0 0.00027 20.8 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase BKACE PF05853.12 gi|289582004|ref|YP_003480470.1| - 3.7e-88 295.4 0.0 4.1e-88 295.2 0.0 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme DNA_binding_1 PF01035.20 gi|289582005|ref|YP_003480471.1| - 1e-25 89.6 0.0 1.4e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain IceA2 PF05862.11 gi|289582005|ref|YP_003480471.1| - 0.21 11.5 0.0 2.2 8.3 0.0 2.2 1 1 1 2 2 2 0 Helicobacter pylori IceA2 protein Glyoxalase PF00903.25 gi|289582006|ref|YP_003480472.1| - 2.2e-09 37.6 0.1 3.4e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289582006|ref|YP_003480472.1| - 8e-06 26.6 0.0 1e-05 26.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|289582006|ref|YP_003480472.1| - 0.075 13.0 0.0 8.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase-like domain NMT1 PF09084.11 gi|289582007|ref|YP_003480473.1| - 1.5e-32 113.3 0.0 2.2e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|289582007|ref|YP_003480473.1| - 2.4e-07 30.6 0.2 3.5e-07 30.1 0.2 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|289582007|ref|YP_003480473.1| - 1.7e-05 24.6 0.0 5.2e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|289582008|ref|YP_003480474.1| - 6.4e-12 45.9 0.0 9.3e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|289582008|ref|YP_003480474.1| - 2e-05 24.3 0.0 3.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|289582008|ref|YP_003480474.1| - 0.00024 20.6 0.0 0.00038 20.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 gi|289582008|ref|YP_003480474.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 NMT1-like family NMT1 PF09084.11 gi|289582009|ref|YP_003480475.1| - 5.4e-10 39.6 0.0 9.3e-06 25.7 0.0 2.8 2 1 0 2 2 2 2 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|289582009|ref|YP_003480475.1| - 0.00027 20.4 0.0 0.00095 18.7 0.0 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 gi|289582009|ref|YP_003480475.1| - 0.049 13.3 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 NMT1-like family DUF3834 PF12916.7 gi|289582009|ref|YP_003480475.1| - 0.24 10.6 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Cupin_2 PF07883.11 gi|289582010|ref|YP_003480476.1| - 4.1e-19 68.1 0.3 5.3e-19 67.7 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|289582010|ref|YP_003480476.1| - 4.2e-06 26.7 0.1 5.2e-06 26.4 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|289582010|ref|YP_003480476.1| - 0.00032 20.3 0.0 0.00041 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|289582010|ref|YP_003480476.1| - 0.00032 20.6 0.0 0.00038 20.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|289582010|ref|YP_003480476.1| - 0.004 17.0 0.1 0.0051 16.7 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|289582010|ref|YP_003480476.1| - 0.0088 15.7 0.0 0.015 14.9 0.0 1.3 1 1 0 1 1 1 1 Cupin CDO_I PF05995.12 gi|289582010|ref|YP_003480476.1| - 0.018 14.3 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Cysteine dioxygenase type I CENP-C_C PF11699.8 gi|289582010|ref|YP_003480476.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like PCO_ADO PF07847.12 gi|289582010|ref|YP_003480476.1| - 0.12 11.8 0.0 7.1 6.0 0.0 2.0 1 1 1 2 2 2 0 PCO_ADO EamA PF00892.20 gi|289582011|ref|YP_003480477.1| - 2e-30 105.7 31.1 8.8e-16 58.3 12.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|289582011|ref|YP_003480477.1| - 0.0026 17.0 3.5 0.003 16.8 2.7 1.5 1 1 0 1 1 1 1 Purine nucleobase transmembrane transport Na_Ca_ex PF01699.24 gi|289582011|ref|YP_003480477.1| - 0.049 13.6 0.9 0.049 13.6 0.9 3.6 1 1 2 3 3 3 0 Sodium/calcium exchanger protein LHC PF00556.20 gi|289582011|ref|YP_003480477.1| - 0.053 13.7 1.8 0.053 13.7 1.8 3.3 3 0 0 3 3 3 0 Antenna complex alpha/beta subunit TPT PF03151.16 gi|289582011|ref|YP_003480477.1| - 0.1 11.9 7.5 0.081 12.3 5.3 2.1 1 1 1 2 2 2 0 Triose-phosphate Transporter family 7TMR-DISM_7TM PF07695.11 gi|289582011|ref|YP_003480477.1| - 3.2 7.6 18.9 0.13 12.1 8.1 2.2 1 1 1 2 2 2 0 7TM diverse intracellular signalling NosL PF05573.12 gi|289582012|ref|YP_003480478.1| - 6.7e-18 65.3 0.0 9.9e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 NosL Polyketide_cyc PF03364.20 gi|289582013|ref|YP_003480479.1| - 6.4e-10 39.3 0.0 9e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|289582013|ref|YP_003480479.1| - 2.3e-05 24.7 1.1 3.2e-05 24.2 1.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport PhoU PF01895.19 gi|289582014|ref|YP_003480480.1| - 1e-20 74.0 6.7 7.4e-17 61.6 1.1 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|289582014|ref|YP_003480480.1| - 2.9e-09 36.6 0.0 1e-08 34.9 0.0 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PBP_like_2 PF12849.7 gi|289582016|ref|YP_003480482.1| - 2.4e-26 93.1 0.1 3.5e-26 92.5 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|289582016|ref|YP_003480482.1| - 4.1e-15 55.4 0.0 1.6e-14 53.5 0.0 1.9 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|289582016|ref|YP_003480482.1| - 0.02 14.9 1.7 0.42 10.5 0.1 2.1 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|289582017|ref|YP_003480483.1| - 2.2e-18 66.7 14.0 2.2e-18 66.7 14.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289582018|ref|YP_003480484.1| - 2.8e-24 85.9 16.5 2.8e-24 85.9 16.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3333 PF11812.8 gi|289582018|ref|YP_003480484.1| - 0.058 13.6 0.3 0.058 13.6 0.3 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF3333) Mito_morph_reg PF14972.6 gi|289582018|ref|YP_003480484.1| - 0.097 12.3 0.3 6.8 6.3 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial morphogenesis regulator Saf_2TM PF18303.1 gi|289582018|ref|YP_003480484.1| - 0.61 9.7 4.8 15 5.2 0.0 3.7 4 0 0 4 4 4 0 SAVED-fused 2TM effector domain ABC_tran PF00005.27 gi|289582019|ref|YP_003480485.1| - 2.4e-27 96.1 0.0 3.7e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582019|ref|YP_003480485.1| - 4.6e-10 39.8 0.0 0.0002 21.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289582019|ref|YP_003480485.1| - 7.1e-09 35.4 0.0 0.00017 21.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|289582019|ref|YP_003480485.1| - 2.4e-06 27.5 0.0 0.0023 17.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|289582019|ref|YP_003480485.1| - 0.0002 21.6 0.0 0.00043 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|289582019|ref|YP_003480485.1| - 0.00046 19.9 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|289582019|ref|YP_003480485.1| - 0.00061 20.0 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|289582019|ref|YP_003480485.1| - 0.00082 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|289582019|ref|YP_003480485.1| - 0.002 18.7 0.0 0.004 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|289582019|ref|YP_003480485.1| - 0.0026 17.7 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|289582019|ref|YP_003480485.1| - 0.0054 17.1 0.1 0.016 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|289582019|ref|YP_003480485.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|289582019|ref|YP_003480485.1| - 0.019 15.3 0.0 0.15 12.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase DeoRC PF00455.22 gi|289582019|ref|YP_003480485.1| - 0.026 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|289582019|ref|YP_003480485.1| - 0.026 14.2 0.1 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|289582019|ref|YP_003480485.1| - 0.047 13.2 0.0 0.18 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|289582019|ref|YP_003480485.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|289582019|ref|YP_003480485.1| - 0.14 10.9 0.1 10 4.8 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|289582019|ref|YP_003480485.1| - 0.15 11.8 0.0 0.73 9.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain YbjN PF10722.9 gi|289582019|ref|YP_003480485.1| - 0.19 11.7 1.0 2.8 8.0 0.0 2.9 3 1 1 4 4 4 0 Putative bacterial sensory transduction regulator PhoU PF01895.19 gi|289582020|ref|YP_003480486.1| - 8.8e-41 138.3 7.2 3.2e-22 78.8 0.2 2.1 2 0 0 2 2 2 2 PhoU domain PhoU PF01895.19 gi|289582021|ref|YP_003480487.1| - 1.3e-13 51.2 0.8 1.3e-13 51.2 0.8 2.6 3 0 0 3 3 3 1 PhoU domain UPF0149 PF03695.13 gi|289582021|ref|YP_003480487.1| - 0.014 15.7 1.3 0.021 15.1 1.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0149) PrpR_N PF06506.11 gi|289582021|ref|YP_003480487.1| - 0.035 13.7 0.3 3.1 7.3 0.1 2.3 2 0 0 2 2 2 0 Propionate catabolism activator LMWPc PF01451.21 gi|289582022|ref|YP_003480488.1| - 8e-26 91.1 0.0 1.2e-25 90.5 0.0 1.3 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Phosphonate-bd PF12974.7 gi|289582024|ref|YP_003480490.1| - 1.3e-41 142.8 0.0 1.8e-41 142.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HGD-D PF06050.13 gi|289582024|ref|YP_003480490.1| - 0.0053 16.6 0.0 0.0079 16.0 0.0 1.2 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component ABC_tran PF00005.27 gi|289582025|ref|YP_003480491.1| - 3e-37 128.2 0.0 4.3e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582025|ref|YP_003480491.1| - 1e-07 32.1 0.0 0.0099 15.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|289582025|ref|YP_003480491.1| - 0.00046 20.1 0.2 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|289582025|ref|YP_003480491.1| - 0.0011 18.7 0.0 0.0028 17.4 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|289582025|ref|YP_003480491.1| - 0.0012 18.2 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|289582025|ref|YP_003480491.1| - 0.003 17.9 0.2 0.012 16.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|289582025|ref|YP_003480491.1| - 0.0042 16.8 0.1 0.0059 16.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289582025|ref|YP_003480491.1| - 0.0047 17.2 0.1 0.24 11.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|289582025|ref|YP_003480491.1| - 0.0056 16.8 0.0 0.018 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|289582025|ref|YP_003480491.1| - 0.0058 16.1 0.2 0.15 11.5 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289582025|ref|YP_003480491.1| - 0.014 15.9 0.1 0.021 15.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|289582025|ref|YP_003480491.1| - 0.021 14.6 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|289582025|ref|YP_003480491.1| - 0.049 13.7 0.1 0.19 11.8 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|289582025|ref|YP_003480491.1| - 0.096 13.0 0.1 0.17 12.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|289582025|ref|YP_003480491.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.6 gi|289582025|ref|YP_003480491.1| - 0.14 12.4 0.1 2.4 8.5 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|289582026|ref|YP_003480492.1| - 3.1e-14 53.2 11.1 3.1e-14 53.2 11.1 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|289582026|ref|YP_003480492.1| - 0.044 13.5 0.3 0.14 11.9 0.3 1.8 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family BPD_transp_1 PF00528.22 gi|289582027|ref|YP_003480493.1| - 2.8e-13 50.0 12.7 2.8e-13 50.0 12.7 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NADH-u_ox-rdase PF10785.9 gi|289582027|ref|YP_003480493.1| - 0.46 11.2 3.9 2.6 8.8 0.4 3.0 3 1 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit HAD_2 PF13419.6 gi|289582029|ref|YP_003480495.1| - 4.7e-14 52.9 0.0 6.4e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289582029|ref|YP_003480495.1| - 4e-08 33.8 0.0 0.0021 18.4 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289582029|ref|YP_003480495.1| - 5e-08 32.9 0.0 9.4e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289582029|ref|YP_003480495.1| - 2.1e-05 25.0 0.6 2.8e-05 24.6 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SBP_bac_8 PF13416.6 gi|289582030|ref|YP_003480496.1| - 4.4e-13 49.7 0.1 6.2e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|289582030|ref|YP_003480496.1| - 6.4e-13 48.7 0.0 1.1e-12 47.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|289582030|ref|YP_003480496.1| - 6.9e-12 45.9 0.3 1.3e-05 25.3 0.0 2.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|289582030|ref|YP_003480496.1| - 1.6e-10 41.2 0.0 2.9e-10 40.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|289582030|ref|YP_003480496.1| - 0.092 12.6 0.9 0.19 11.6 0.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|289582031|ref|YP_003480497.1| - 2.4e-12 47.0 21.7 2.4e-12 47.0 21.7 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289582032|ref|YP_003480498.1| - 3.1e-09 36.8 8.6 3.1e-09 36.8 8.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|289582033|ref|YP_003480499.1| - 8.4e-35 120.3 0.0 1.3e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|289582033|ref|YP_003480499.1| - 6.3e-10 39.1 0.2 1.5e-09 37.8 0.2 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|289582033|ref|YP_003480499.1| - 1.3e-05 25.1 0.2 0.13 12.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|289582033|ref|YP_003480499.1| - 0.0021 18.0 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|289582033|ref|YP_003480499.1| - 0.0082 16.5 0.6 0.018 15.4 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|289582033|ref|YP_003480499.1| - 0.018 15.6 0.1 0.63 10.7 0.0 2.9 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|289582033|ref|YP_003480499.1| - 0.021 15.3 0.2 0.16 12.4 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289582033|ref|YP_003480499.1| - 0.021 15.1 0.6 0.045 14.0 0.6 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289582033|ref|YP_003480499.1| - 0.038 14.5 0.0 0.053 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|289582033|ref|YP_003480499.1| - 0.042 13.3 0.3 3.5 7.0 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|289582033|ref|YP_003480499.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|289582033|ref|YP_003480499.1| - 0.2 10.8 0.0 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|289582033|ref|YP_003480499.1| - 0.27 10.3 0.0 0.34 10.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NESP55 PF06390.12 gi|289582035|ref|YP_003480501.1| - 1.3 8.6 14.9 1.5 8.3 15.0 1.3 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Trypan_PARP PF05887.11 gi|289582035|ref|YP_003480501.1| - 7 6.6 9.1 9.9 6.2 9.0 1.4 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) HTH_24 PF13412.6 gi|289582036|ref|YP_003480502.1| - 2e-12 46.5 0.0 3.9e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|289582036|ref|YP_003480502.1| - 6.4e-12 45.3 0.0 1.1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|289582036|ref|YP_003480502.1| - 3.6e-08 33.1 0.0 7.1e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|289582036|ref|YP_003480502.1| - 7.2e-07 29.1 0.1 2.3e-06 27.4 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_DeoR PF08220.12 gi|289582036|ref|YP_003480502.1| - 1.3e-06 28.1 0.0 2.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|289582036|ref|YP_003480502.1| - 1.1e-05 25.2 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|289582036|ref|YP_003480502.1| - 6e-05 23.0 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|289582036|ref|YP_003480502.1| - 8.2e-05 22.5 0.0 0.00019 21.3 0.0 1.6 2 0 0 2 2 1 1 MarR family Fe_dep_repress PF01325.19 gi|289582036|ref|YP_003480502.1| - 8.8e-05 22.6 0.1 0.00031 20.9 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|289582036|ref|YP_003480502.1| - 9.2e-05 22.3 0.0 0.00022 21.1 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289582036|ref|YP_003480502.1| - 0.00017 21.4 0.0 0.00033 20.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|289582036|ref|YP_003480502.1| - 0.0006 20.1 0.1 0.0023 18.2 0.0 1.9 1 1 1 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|289582036|ref|YP_003480502.1| - 0.001 18.9 0.0 0.0035 17.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|289582036|ref|YP_003480502.1| - 0.0011 18.9 0.0 0.0024 17.8 0.0 1.6 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|289582036|ref|YP_003480502.1| - 0.0016 18.3 0.2 0.0029 17.4 0.0 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|289582036|ref|YP_003480502.1| - 0.0029 18.0 0.0 0.0045 17.3 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein DUF4110 PF13422.6 gi|289582036|ref|YP_003480502.1| - 0.003 17.6 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4110) GntR PF00392.21 gi|289582036|ref|YP_003480502.1| - 0.0041 16.7 0.1 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|289582036|ref|YP_003480502.1| - 0.005 16.8 0.0 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|289582036|ref|YP_003480502.1| - 0.0055 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|289582036|ref|YP_003480502.1| - 0.0076 16.2 0.0 0.017 15.1 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|289582036|ref|YP_003480502.1| - 0.0097 15.7 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit LacI PF00356.21 gi|289582036|ref|YP_003480502.1| - 0.013 15.3 0.0 0.12 12.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_28 PF13518.6 gi|289582036|ref|YP_003480502.1| - 0.02 15.0 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|289582036|ref|YP_003480502.1| - 0.029 13.9 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 winged helix-turn-helix RPA_C PF08784.11 gi|289582036|ref|YP_003480502.1| - 0.033 14.9 0.1 0.074 13.7 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal HTH_10 PF04967.12 gi|289582036|ref|YP_003480502.1| - 0.035 13.9 0.0 0.088 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|289582036|ref|YP_003480502.1| - 0.04 13.6 0.2 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_6 PF01418.17 gi|289582036|ref|YP_003480502.1| - 0.043 13.8 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Mga PF08280.11 gi|289582036|ref|YP_003480502.1| - 0.055 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|289582036|ref|YP_003480502.1| - 0.095 12.2 0.1 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_32 PF13565.6 gi|289582036|ref|YP_003480502.1| - 0.13 12.9 0.1 0.3 11.7 0.1 1.6 1 1 0 1 1 1 0 Homeodomain-like domain DUF3784 PF12650.7 gi|289582037|ref|YP_003480503.1| - 0.005 17.0 0.4 0.0062 16.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) LtrA PF06772.11 gi|289582037|ref|YP_003480503.1| - 0.0095 15.2 2.6 0.011 15.0 2.6 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) SfLAP PF11139.8 gi|289582037|ref|YP_003480503.1| - 0.02 14.4 0.3 0.02 14.4 0.3 1.8 1 1 1 2 2 2 0 Sap, sulfolipid-1-addressing protein Bax1-I PF01027.20 gi|289582037|ref|YP_003480503.1| - 0.02 14.7 4.0 0.042 13.7 4.0 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF3180 PF11377.8 gi|289582037|ref|YP_003480503.1| - 0.09 12.9 4.9 5.6 7.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) SdpI PF13630.6 gi|289582037|ref|YP_003480503.1| - 0.59 10.3 4.3 16 5.7 2.1 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family YccF PF03733.13 gi|289582037|ref|YP_003480503.1| - 8 7.3 10.8 0.47 11.2 2.0 2.5 2 1 0 2 2 2 0 Inner membrane component domain LolA_like PF17131.4 gi|289582038|ref|YP_003480504.1| - 0.011 15.4 0.2 5.7 6.6 0.0 2.5 1 1 1 2 2 2 0 Outer membrane lipoprotein-sorting protein TPP_enzyme_C PF02775.21 gi|289582039|ref|YP_003480505.1| - 4.4e-33 114.2 0.1 6.8e-33 113.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|289582039|ref|YP_003480505.1| - 0.14 12.3 1.7 0.4 10.9 1.7 1.9 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|289582040|ref|YP_003480506.1| - 2.4e-49 168.2 0.0 4.7e-49 167.2 0.0 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|289582040|ref|YP_003480506.1| - 1.7e-46 158.5 0.0 3.9e-46 157.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|289582040|ref|YP_003480506.1| - 3e-12 46.7 0.0 5.8e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|289582040|ref|YP_003480506.1| - 0.0036 16.9 0.0 0.0077 15.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|289582040|ref|YP_003480506.1| - 0.016 15.1 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain RPAP3_C PF13877.6 gi|289582040|ref|YP_003480506.1| - 0.2 12.2 0.0 0.6 10.7 0.0 1.8 1 1 0 1 1 1 0 Potential Monad-binding region of RPAP3 DUF2530 PF10745.9 gi|289582041|ref|YP_003480507.1| - 0.0058 16.8 2.5 0.0067 16.6 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2530) Glyoxalase PF00903.25 gi|289582042|ref|YP_003480508.1| - 1.3e-06 28.7 1.4 4e-06 27.0 0.0 2.2 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|289582042|ref|YP_003480508.1| - 2e-05 24.8 0.0 3.2e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PHP_C PF13263.6 gi|289582043|ref|YP_003480509.1| - 8.1e-07 28.7 0.0 3.3e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|289582043|ref|YP_003480509.1| - 0.00016 22.0 0.0 0.00029 21.2 0.0 1.5 1 1 0 1 1 1 1 PHP domain Chorismate_synt PF01264.21 gi|289582044|ref|YP_003480510.1| - 1.6e-122 408.3 0.0 1.9e-122 408.1 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Phosphodiest PF01663.22 gi|289582045|ref|YP_003480511.1| - 1.2e-22 81.1 0.1 2.8e-22 79.8 0.0 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|289582045|ref|YP_003480511.1| - 0.0033 17.5 0.0 0.21 11.7 0.0 2.2 2 0 0 2 2 2 2 PglZ domain EPSP_synthase PF00275.20 gi|289582046|ref|YP_003480512.1| - 5.8e-111 371.1 0.1 7.2e-111 370.8 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF2092 PF09865.9 gi|289582047|ref|YP_003480513.1| - 0.0044 16.4 0.0 0.013 14.9 0.0 1.7 2 0 0 2 2 2 1 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.14 gi|289582047|ref|YP_003480513.1| - 0.0063 16.1 0.1 0.063 12.8 0.0 2.1 2 0 0 2 2 2 1 MucB/RseB N-terminal domain Peptidase_M24 PF00557.24 gi|289582048|ref|YP_003480514.1| - 1.9e-48 164.9 0.7 2.7e-48 164.4 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|289582048|ref|YP_003480514.1| - 6.4e-07 30.1 0.1 1.7e-06 28.7 0.0 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain PDH PF02153.17 gi|289582049|ref|YP_003480515.1| - 1e-11 44.3 1.0 3.3e-10 39.4 1.0 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.16 gi|289582049|ref|YP_003480515.1| - 0.00016 21.3 0.5 0.00045 19.9 0.2 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|289582049|ref|YP_003480515.1| - 0.033 14.8 4.5 0.086 13.4 2.0 2.7 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|289582049|ref|YP_003480515.1| - 0.086 13.3 0.3 0.27 11.7 0.1 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|289582049|ref|YP_003480515.1| - 0.81 9.6 4.1 0.78 9.6 0.8 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_23 PF13489.6 gi|289582050|ref|YP_003480516.1| - 1.6e-10 41.1 0.0 2.9e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582050|ref|YP_003480516.1| - 7.5e-10 39.4 0.0 1.6e-09 38.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|289582050|ref|YP_003480516.1| - 2.5e-07 30.3 0.0 4.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|289582050|ref|YP_003480516.1| - 7.6e-07 29.0 0.0 6e-06 26.1 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582050|ref|YP_003480516.1| - 0.0003 21.4 0.0 0.00073 20.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289582050|ref|YP_003480516.1| - 0.0032 18.1 0.0 0.0082 16.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|289582050|ref|YP_003480516.1| - 0.033 15.2 0.3 0.22 12.6 0.1 2.3 2 0 0 2 2 2 0 Methyltransferase domain SurE PF01975.17 gi|289582051|ref|YP_003480517.1| - 1.9e-46 158.3 0.1 2.3e-46 158.1 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE EAP30 PF04157.16 gi|289582052|ref|YP_003480518.1| - 0.012 14.9 0.1 0.014 14.7 0.1 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1328 PF07043.13 gi|289582053|ref|YP_003480519.1| - 3.6e-14 52.7 17.1 4.2e-14 52.5 17.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Sterol-sensing PF12349.8 gi|289582053|ref|YP_003480519.1| - 0.36 10.7 5.6 0.39 10.6 5.6 1.0 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation PBC PF03792.13 gi|289582055|ref|YP_003480521.1| - 0.25 11.1 0.8 0.8 9.4 0.8 1.7 1 1 0 1 1 1 0 PBC domain Herpes_capsid PF06112.11 gi|289582055|ref|YP_003480521.1| - 3.5 7.7 9.9 12 6.0 9.9 1.9 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein PDDEXK_1 PF12705.7 gi|289582056|ref|YP_003480522.1| - 0.00011 22.3 7.9 0.0023 17.9 0.2 2.4 2 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.21 gi|289582057|ref|YP_003480523.1| - 9.7e-49 166.6 0.2 6.9e-48 163.8 0.0 2.3 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|289582057|ref|YP_003480523.1| - 2e-29 103.1 0.0 2.9e-16 59.8 0.0 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|289582057|ref|YP_003480523.1| - 3.8e-24 85.7 0.0 4.3e-23 82.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|289582057|ref|YP_003480523.1| - 1e-18 68.2 1.5 3.7e-18 66.4 0.0 2.7 5 0 0 5 5 5 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|289582057|ref|YP_003480523.1| - 1.1e-08 34.7 0.1 0.0065 16.3 0.0 3.7 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|289582057|ref|YP_003480523.1| - 6.7e-06 26.0 0.0 0.21 11.3 0.0 3.6 2 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 gi|289582057|ref|YP_003480523.1| - 9.8e-06 25.3 0.0 0.00016 21.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|289582057|ref|YP_003480523.1| - 1.2e-05 25.2 0.2 0.0035 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Ribosomal_S13_N PF08069.12 gi|289582059|ref|YP_003480525.1| - 9.6e-24 83.2 0.1 1.5e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|289582059|ref|YP_003480525.1| - 3.1e-14 52.9 0.2 5.2e-14 52.2 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 PDE8 PF08629.10 gi|289582060|ref|YP_003480526.1| - 0.21 11.6 0.9 0.61 10.1 0.9 1.7 1 0 0 1 1 1 0 PDE8 phosphodiesterase Ribosomal_S3Ae PF01015.18 gi|289582062|ref|YP_003480528.1| - 1.3e-60 204.5 0.4 1.5e-60 204.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family TruD PF01142.18 gi|289582063|ref|YP_003480529.1| - 1.3e-164 548.0 0.0 1.4e-164 547.8 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) ChiC PF06483.11 gi|289582064|ref|YP_003480530.1| - 0.094 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Chitinase C DUF2677 PF10838.8 gi|289582065|ref|YP_003480531.1| - 0.057 13.4 0.1 0.075 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2677) PTH2 PF01981.16 gi|289582067|ref|YP_003480533.1| - 3.8e-40 136.8 0.1 4.2e-40 136.7 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 SBD_N PF07005.11 gi|289582067|ref|YP_003480533.1| - 0.035 13.8 0.2 0.044 13.5 0.2 1.1 1 0 0 1 1 1 0 Sugar-binding N-terminal domain Thioredoxin_4 PF13462.6 gi|289582068|ref|YP_003480534.1| - 9.2e-28 97.5 0.0 1.1e-27 97.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|289582068|ref|YP_003480534.1| - 1.4e-09 38.0 0.8 2.6e-05 24.1 0.1 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|289582068|ref|YP_003480534.1| - 0.0017 18.8 0.1 0.016 15.6 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DCD PF06559.11 gi|289582069|ref|YP_003480535.1| - 8.2e-16 57.7 0.0 1.1e-13 50.8 0.0 2.0 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|289582069|ref|YP_003480535.1| - 1.9e-13 50.2 0.0 2.6e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|289582070|ref|YP_003480536.1| - 3.4e-51 173.1 0.2 5.2e-51 172.5 0.2 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|289582070|ref|YP_003480536.1| - 3.6e-07 30.1 0.0 1e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|289582070|ref|YP_003480536.1| - 9.8e-05 22.6 0.5 0.00039 20.7 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289582070|ref|YP_003480536.1| - 0.00037 20.3 0.3 0.0033 17.3 0.0 2.6 2 1 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|289582070|ref|YP_003480536.1| - 0.00082 18.8 0.0 0.0032 16.9 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|289582070|ref|YP_003480536.1| - 0.0012 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|289582070|ref|YP_003480536.1| - 0.0012 18.6 0.0 0.0064 16.3 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|289582070|ref|YP_003480536.1| - 0.0026 17.3 0.0 0.0067 16.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|289582070|ref|YP_003480536.1| - 0.02 14.7 0.0 0.055 13.3 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|289582070|ref|YP_003480536.1| - 0.022 14.8 0.0 0.061 13.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|289582070|ref|YP_003480536.1| - 0.029 14.8 0.0 0.061 13.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain P22_Cro PF14549.6 gi|289582070|ref|YP_003480536.1| - 0.035 13.9 0.1 0.11 12.4 0.1 1.8 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_5 PF01022.20 gi|289582070|ref|YP_003480536.1| - 0.047 13.6 0.1 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family KorB PF08535.10 gi|289582070|ref|YP_003480536.1| - 0.062 13.4 0.4 0.54 10.3 0.1 2.7 2 1 0 2 2 2 0 KorB domain Sigma70_r4_2 PF08281.12 gi|289582070|ref|YP_003480536.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 LacI PF00356.21 gi|289582070|ref|YP_003480536.1| - 0.12 12.2 1.0 0.32 10.8 1.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_17 PF12728.7 gi|289582070|ref|YP_003480536.1| - 0.12 12.6 0.0 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|289582070|ref|YP_003480536.1| - 0.16 11.7 0.0 1.9 8.3 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Crp_2 PF13545.6 gi|289582070|ref|YP_003480536.1| - 0.19 11.7 1.3 1.7 8.7 0.0 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HNF-1_N PF04814.13 gi|289582070|ref|YP_003480536.1| - 0.19 12.3 0.0 0.33 11.5 0.0 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Methyltransf_31 PF13847.6 gi|289582071|ref|YP_003480537.1| - 2.4e-13 50.1 0.0 3.4e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582071|ref|YP_003480537.1| - 8.1e-12 45.3 0.0 1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289582071|ref|YP_003480537.1| - 1.1e-10 42.1 0.0 3.2e-10 40.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582071|ref|YP_003480537.1| - 2.4e-10 40.9 0.1 6.2e-07 30.0 0.0 2.4 1 1 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582071|ref|YP_003480537.1| - 1.3e-09 38.7 0.0 3.2e-09 37.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289582071|ref|YP_003480537.1| - 3.4e-09 36.8 0.0 5.2e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|289582071|ref|YP_003480537.1| - 2.4e-07 30.3 0.0 3.7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|289582071|ref|YP_003480537.1| - 1.8e-06 27.5 0.0 2.6e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.19 gi|289582071|ref|YP_003480537.1| - 1.1e-05 25.6 0.0 9.1e-05 22.6 0.0 2.0 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_19 PF04672.12 gi|289582071|ref|YP_003480537.1| - 0.012 15.2 0.1 0.023 14.2 0.1 1.4 1 1 0 1 1 1 0 S-adenosyl methyltransferase Fibrillarin PF01269.17 gi|289582071|ref|YP_003480537.1| - 0.016 14.3 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin GCD14 PF08704.10 gi|289582071|ref|YP_003480537.1| - 0.018 14.7 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|289582071|ref|YP_003480537.1| - 0.043 13.1 0.0 0.064 12.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|289582071|ref|YP_003480537.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F 4HBT PF03061.22 gi|289582072|ref|YP_003480538.1| - 4.9e-15 55.6 0.0 6.8e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|289582072|ref|YP_003480538.1| - 1.1e-14 55.0 0.0 1.2e-14 54.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|289582072|ref|YP_003480538.1| - 2e-11 43.7 0.0 2.4e-05 23.8 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_3 PF13622.6 gi|289582072|ref|YP_003480538.1| - 0.093 13.0 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF1285 PF06938.11 gi|289582072|ref|YP_003480538.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1285) Epimerase PF01370.21 gi|289582075|ref|YP_003480541.1| - 1e-30 107.0 0.0 6.6e-30 104.3 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|289582075|ref|YP_003480541.1| - 2.4e-23 83.1 0.2 1.9e-21 76.9 0.2 2.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|289582075|ref|YP_003480541.1| - 2.2e-15 56.5 0.0 3.3e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|289582075|ref|YP_003480541.1| - 1.5e-09 37.4 0.1 6.8e-08 32.0 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|289582075|ref|YP_003480541.1| - 4.7e-08 33.1 0.0 8e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|289582075|ref|YP_003480541.1| - 7.8e-08 31.7 0.0 1.1e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|289582075|ref|YP_003480541.1| - 1.4e-05 24.4 0.2 0.00068 18.9 0.2 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|289582075|ref|YP_003480541.1| - 0.0011 18.4 0.0 0.0095 15.4 0.0 2.3 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|289582075|ref|YP_003480541.1| - 0.0026 17.4 0.8 0.06 12.9 0.0 2.8 3 0 0 3 3 3 1 NmrA-like family Thi4 PF01946.17 gi|289582076|ref|YP_003480542.1| - 2.3e-61 207.0 0.5 1.9e-49 168.1 0.2 2.2 1 1 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|289582076|ref|YP_003480542.1| - 2.4e-11 43.7 0.2 3.8e-11 43.0 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289582076|ref|YP_003480542.1| - 7.8e-11 41.7 0.3 6e-08 32.2 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|289582076|ref|YP_003480542.1| - 2.9e-10 40.3 1.2 1.3e-05 25.0 0.2 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|289582076|ref|YP_003480542.1| - 1.6e-09 37.5 0.0 3.1e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289582076|ref|YP_003480542.1| - 1.5e-08 34.2 0.2 3.5e-08 33.0 0.1 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289582076|ref|YP_003480542.1| - 2.4e-08 34.1 0.1 5.5e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|289582076|ref|YP_003480542.1| - 6.4e-07 28.4 0.0 8.8e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|289582076|ref|YP_003480542.1| - 4.5e-05 22.9 0.0 8.8e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289582076|ref|YP_003480542.1| - 0.00016 22.2 0.2 0.00054 20.5 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|289582076|ref|YP_003480542.1| - 0.00018 20.5 0.1 0.075 11.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|289582076|ref|YP_003480542.1| - 0.00023 20.3 0.2 0.0095 15.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|289582076|ref|YP_003480542.1| - 0.00046 20.3 0.0 0.06 13.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|289582076|ref|YP_003480542.1| - 0.00083 18.8 0.0 0.0028 17.0 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|289582076|ref|YP_003480542.1| - 0.001 18.2 0.1 0.0013 17.9 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|289582076|ref|YP_003480542.1| - 0.0019 18.6 0.1 0.0041 17.5 0.1 1.8 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|289582076|ref|YP_003480542.1| - 0.0021 18.0 0.2 0.0067 16.4 0.1 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|289582076|ref|YP_003480542.1| - 0.0034 16.9 0.5 1.2 8.6 0.1 2.8 2 1 0 3 3 3 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|289582076|ref|YP_003480542.1| - 0.032 14.5 0.8 0.056 13.7 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain Citrate_synt PF00285.21 gi|289582077|ref|YP_003480543.1| - 8.1e-99 331.1 0.0 9.6e-99 330.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain HTH_20 PF12840.7 gi|289582077|ref|YP_003480543.1| - 0.0016 18.4 0.1 0.0064 16.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Citrate_synt PF00285.21 gi|289582080|ref|YP_003480546.1| - 2e-103 346.2 0.0 2.3e-103 346.0 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Copper-bind PF00127.20 gi|289582081|ref|YP_003480547.1| - 6.2e-11 42.6 0.1 1.1e-10 41.9 0.1 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|289582081|ref|YP_003480547.1| - 0.056 13.6 0.0 2.8 8.1 0.1 2.1 2 0 0 2 2 2 0 Cupredoxin-like domain 17kDa_Anti_2 PF16998.5 gi|289582081|ref|YP_003480547.1| - 0.073 13.0 0.1 0.095 12.6 0.1 1.2 1 0 0 1 1 1 0 17 kDa outer membrane surface antigen XOO_2897-deam PF14440.6 gi|289582081|ref|YP_003480547.1| - 0.14 12.3 0.1 0.71 10.0 0.0 1.9 1 1 1 2 2 2 0 Xanthomonas XOO_2897-like deaminase CDP-OH_P_transf PF01066.21 gi|289582082|ref|YP_003480548.1| - 5.3e-10 39.9 4.9 5.3e-10 39.9 4.9 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase EcsB PF05975.12 gi|289582082|ref|YP_003480548.1| - 2.1 7.1 5.4 0.35 9.7 1.3 1.8 2 0 0 2 2 2 0 Bacterial ABC transporter protein EcsB HEAT_2 PF13646.6 gi|289582083|ref|YP_003480549.1| - 1.2e-20 73.6 15.5 9.4e-14 51.6 7.5 3.8 2 1 2 4 4 4 2 HEAT repeats HEAT_PBS PF03130.16 gi|289582083|ref|YP_003480549.1| - 1.2e-14 53.4 11.5 1.8e-05 25.0 0.1 6.0 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|289582083|ref|YP_003480549.1| - 5.4e-07 29.3 1.3 0.033 14.4 0.1 3.1 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|289582083|ref|YP_003480549.1| - 7.6e-06 26.3 3.5 0.057 13.9 0.1 3.1 2 1 0 2 2 2 2 HEAT-like repeat Arm PF00514.23 gi|289582083|ref|YP_003480549.1| - 0.001 19.0 0.8 4 7.6 0.0 3.4 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat AATF-Che1 PF13339.6 gi|289582083|ref|YP_003480549.1| - 0.031 15.0 0.5 0.28 11.8 0.3 2.4 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor Cnd1 PF12717.7 gi|289582083|ref|YP_003480549.1| - 0.035 14.1 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 FlaC_arch PF05377.11 gi|289582083|ref|YP_003480549.1| - 0.057 13.8 1.1 3.6 8.0 0.8 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Vitellogenin_N PF01347.22 gi|289582083|ref|YP_003480549.1| - 0.084 11.3 0.0 0.12 10.7 0.0 1.2 1 0 0 1 1 1 0 Lipoprotein amino terminal region DHOR PF06537.11 gi|289582083|ref|YP_003480549.1| - 0.093 11.3 0.1 0.14 10.7 0.1 1.2 1 0 0 1 1 1 0 Di-haem oxidoreductase, putative peroxidase FTA4 PF13093.6 gi|289582083|ref|YP_003480549.1| - 0.77 9.6 8.8 12 5.7 5.4 2.5 2 1 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Prefoldin_2 PF01920.20 gi|289582083|ref|YP_003480549.1| - 2.9 7.9 5.0 61 3.6 5.0 2.7 1 1 0 1 1 1 0 Prefoldin subunit PLDc_2 PF13091.6 gi|289582084|ref|YP_003480550.1| - 3.2e-43 146.8 0.0 8.3e-25 87.2 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|289582084|ref|YP_003480550.1| - 6e-08 32.6 0.0 4.6e-06 26.6 0.0 2.6 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|289582084|ref|YP_003480550.1| - 4e-06 26.2 0.9 0.017 14.3 0.1 2.5 2 1 0 2 2 2 2 Archaeal transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|289582085|ref|YP_003480551.1| - 4.7e-19 68.3 0.1 7.8e-19 67.6 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|289582085|ref|YP_003480551.1| - 4.9e-12 45.8 0.1 1.4e-11 44.3 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|289582085|ref|YP_003480551.1| - 9.5e-06 25.5 0.0 1.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|289582085|ref|YP_003480551.1| - 1.1e-05 25.2 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|289582085|ref|YP_003480551.1| - 1.3e-05 25.0 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289582085|ref|YP_003480551.1| - 7.1e-05 22.6 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|289582085|ref|YP_003480551.1| - 0.00016 21.7 0.0 0.00036 20.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289582085|ref|YP_003480551.1| - 0.00016 21.1 0.0 0.0003 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|289582085|ref|YP_003480551.1| - 0.00071 19.9 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|289582085|ref|YP_003480551.1| - 0.0018 18.1 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|289582085|ref|YP_003480551.1| - 0.003 17.2 0.0 0.007 16.0 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family FeoC PF09012.10 gi|289582085|ref|YP_003480551.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.12 gi|289582085|ref|YP_003480551.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|289582085|ref|YP_003480551.1| - 0.016 15.7 0.0 0.025 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|289582085|ref|YP_003480551.1| - 0.026 14.5 0.1 0.045 13.7 0.1 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|289582085|ref|YP_003480551.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|289582085|ref|YP_003480551.1| - 0.085 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|289582085|ref|YP_003480551.1| - 0.11 12.1 0.0 0.17 11.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Mnd1 PF03962.15 gi|289582085|ref|YP_003480551.1| - 0.21 11.9 0.1 1 9.7 0.0 1.9 2 0 0 2 2 2 0 Mnd1 HTH domain DUF892 PF05974.12 gi|289582086|ref|YP_003480552.1| - 0.0045 17.0 5.6 0.08 13.0 4.8 2.8 1 1 0 1 1 1 1 Domain of unknown function (DUF892) YkyA PF10368.9 gi|289582086|ref|YP_003480552.1| - 0.012 15.3 3.0 0.021 14.5 2.3 1.8 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Rubrerythrin PF02915.17 gi|289582086|ref|YP_003480552.1| - 0.12 12.8 6.6 0.46 10.9 3.9 2.6 1 1 1 2 2 2 0 Rubrerythrin hnRNP_Q_AcD PF18360.1 gi|289582086|ref|YP_003480552.1| - 0.13 12.3 0.8 1.8 8.6 0.0 2.8 3 1 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain LcrV PF04792.12 gi|289582086|ref|YP_003480552.1| - 0.21 10.8 3.3 0.26 10.5 0.6 1.9 1 1 0 2 2 2 0 V antigen (LcrV) protein UPF0051 PF01458.17 gi|289582087|ref|YP_003480553.1| - 4.5e-62 209.6 1.1 5.7e-62 209.2 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|289582088|ref|YP_003480554.1| - 1.2e-70 237.6 0.6 1.6e-70 237.2 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.14 gi|289582088|ref|YP_003480554.1| - 0.18 12.5 0.0 0.37 11.5 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase ABC_tran PF00005.27 gi|289582089|ref|YP_003480555.1| - 3.1e-16 60.1 0.0 9.7e-16 58.5 0.0 1.7 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|289582089|ref|YP_003480555.1| - 6.9e-06 25.6 0.9 0.031 13.7 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|289582089|ref|YP_003480555.1| - 0.00042 20.2 0.7 0.039 13.8 0.7 2.3 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 gi|289582089|ref|YP_003480555.1| - 0.00052 20.0 0.1 1.2 9.1 0.0 2.4 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|289582089|ref|YP_003480555.1| - 0.0039 16.9 0.1 0.0074 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|289582089|ref|YP_003480555.1| - 0.019 15.4 7.1 0.16 12.4 0.0 2.5 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|289582089|ref|YP_003480555.1| - 0.032 14.5 0.0 0.81 9.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|289582089|ref|YP_003480555.1| - 0.032 14.1 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Sortase PF04203.13 gi|289582089|ref|YP_003480555.1| - 0.043 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Sortase domain AAA_22 PF13401.6 gi|289582089|ref|YP_003480555.1| - 0.053 13.8 0.6 0.99 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289582089|ref|YP_003480555.1| - 0.091 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|289582089|ref|YP_003480555.1| - 0.12 12.0 0.1 0.19 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|289582089|ref|YP_003480555.1| - 0.16 12.1 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|289582089|ref|YP_003480555.1| - 0.2 12.2 1.1 0.64 10.6 0.1 2.3 1 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|289582089|ref|YP_003480555.1| - 0.36 11.3 0.1 0.36 11.3 0.1 2.2 1 1 0 2 2 2 0 AAA domain DNA_pol_B PF00136.21 gi|289582090|ref|YP_003480556.1| - 4.5e-39 134.4 0.0 1.2e-21 77.0 0.0 2.4 2 0 0 2 2 2 2 DNA polymerase family B Intein_splicing PF14890.6 gi|289582090|ref|YP_003480556.1| - 1.8e-23 82.9 0.2 1.4e-13 50.9 0.0 3.6 3 0 0 3 3 3 2 Intein splicing domain DNA_pol_B_exo1 PF03104.19 gi|289582090|ref|YP_003480556.1| - 2.7e-23 82.7 0.0 1.5e-16 60.5 0.0 2.6 2 0 0 2 2 2 2 DNA polymerase family B, exonuclease domain Hint PF01079.20 gi|289582090|ref|YP_003480556.1| - 5.6e-15 55.4 0.0 2.9e-07 30.2 0.0 2.3 2 0 0 2 2 2 2 Hint module LAGLIDADG_3 PF14528.6 gi|289582090|ref|YP_003480556.1| - 4.1e-13 49.4 0.4 0.00043 20.6 0.0 4.0 4 0 0 4 4 4 3 LAGLIDADG-like domain Hom_end_hint PF05203.16 gi|289582090|ref|YP_003480556.1| - 5.6e-12 46.1 0.0 8.2e-08 32.5 0.0 2.5 2 0 0 2 2 2 2 Hom_end-associated Hint Hint_2 PF13403.6 gi|289582090|ref|YP_003480556.1| - 7.5e-09 36.0 0.0 1.1e-06 29.1 0.0 2.9 2 1 0 2 2 2 1 Hint domain Hom_end PF05204.14 gi|289582090|ref|YP_003480556.1| - 4.5e-06 26.8 0.0 0.023 14.9 0.0 3.2 3 0 0 3 3 3 2 Homing endonuclease PT-HINT PF07591.11 gi|289582090|ref|YP_003480556.1| - 0.0021 18.3 1.4 0.43 10.8 0.0 3.5 4 0 0 4 4 4 1 Pretoxin HINT domain Vint PF14623.6 gi|289582090|ref|YP_003480556.1| - 0.06 13.2 0.0 3.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Hint-domain DNA_pol_B_2 PF03175.13 gi|289582090|ref|YP_003480556.1| - 0.11 11.3 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral DUF3995 PF13160.6 gi|289582092|ref|YP_003480558.1| - 0.036 14.4 0.1 0.053 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) DUF4131 PF13567.6 gi|289582092|ref|YP_003480558.1| - 0.057 13.1 0.8 0.088 12.5 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SpoIIIAH PF12685.7 gi|289582092|ref|YP_003480558.1| - 0.21 11.4 22.4 0.11 12.3 1.8 2.2 2 0 0 2 2 2 0 SpoIIIAH-like protein DUF202 PF02656.15 gi|289582092|ref|YP_003480558.1| - 0.52 10.8 4.9 0.97 9.9 4.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) AAA_23 PF13476.6 gi|289582094|ref|YP_003480560.1| - 6.8e-23 82.2 8.2 6.8e-23 82.2 8.2 7.1 1 1 4 5 5 1 1 AAA domain AAA_15 PF13175.6 gi|289582094|ref|YP_003480560.1| - 6.9e-16 58.9 0.0 7.3e-11 42.4 0.0 3.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|289582094|ref|YP_003480560.1| - 7.6e-08 32.5 13.3 0.00064 19.6 0.7 3.8 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|289582094|ref|YP_003480560.1| - 3.9e-07 29.2 71.0 4.9e-05 22.2 0.8 5.9 1 1 4 6 6 6 4 AAA domain AAA_29 PF13555.6 gi|289582094|ref|YP_003480560.1| - 3.9e-07 29.7 0.0 7.5e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|289582094|ref|YP_003480560.1| - 2.7e-05 23.2 109.6 0.034 13.1 21.6 6.1 2 1 4 6 6 6 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|289582094|ref|YP_003480560.1| - 3.9e-05 23.7 52.6 0.081 13.0 3.6 6.3 6 1 1 7 7 6 5 Protein of unknown function (DUF1664) AAA_27 PF13514.6 gi|289582094|ref|YP_003480560.1| - 7e-05 22.5 0.0 7e-05 22.5 0.0 5.6 3 2 1 5 5 5 2 AAA domain SMC_N PF02463.19 gi|289582094|ref|YP_003480560.1| - 7.1e-05 22.3 68.3 0.00064 19.2 68.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|289582094|ref|YP_003480560.1| - 0.0011 17.8 4.9 0.019 13.8 0.1 2.7 3 0 0 3 3 3 2 Predicted ATPase of the ABC class Baculo_PEP_C PF04513.12 gi|289582094|ref|YP_003480560.1| - 0.0013 18.7 25.7 0.0072 16.4 1.0 5.4 5 1 0 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0242 PF06785.11 gi|289582094|ref|YP_003480560.1| - 0.0075 16.4 20.4 0.0075 16.4 20.4 5.7 2 2 3 5 5 5 3 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|289582094|ref|YP_003480560.1| - 0.02 14.0 69.0 0.42 9.6 14.7 5.0 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_16 PF13191.6 gi|289582094|ref|YP_003480560.1| - 0.022 15.2 0.0 0.022 15.2 0.0 5.6 3 2 1 4 4 1 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|289582094|ref|YP_003480560.1| - 0.024 14.4 0.0 0.079 12.7 0.0 1.9 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MukB PF04310.12 gi|289582094|ref|YP_003480560.1| - 0.049 13.4 0.0 0.049 13.4 0.0 3.4 4 0 0 4 4 4 0 MukB N-terminal TPR_MLP1_2 PF07926.12 gi|289582094|ref|YP_003480560.1| - 0.064 13.3 115.4 0.05 13.7 10.1 7.8 3 3 3 7 7 7 0 TPR/MLP1/MLP2-like protein DUF3584 PF12128.8 gi|289582094|ref|YP_003480560.1| - 0.066 10.7 114.1 0.086 10.3 22.6 5.0 2 1 3 5 5 5 0 Protein of unknown function (DUF3584) NACHT PF05729.12 gi|289582094|ref|YP_003480560.1| - 0.068 13.1 0.7 0.19 11.6 0.0 2.2 2 0 0 2 2 1 0 NACHT domain Mod_r PF07200.13 gi|289582094|ref|YP_003480560.1| - 0.11 12.6 80.4 0.21 11.7 11.6 7.5 3 3 4 7 7 7 0 Modifier of rudimentary (Mod(r)) protein AAA_33 PF13671.6 gi|289582094|ref|YP_003480560.1| - 0.13 12.4 0.0 0.13 12.4 0.0 4.1 3 2 0 3 3 1 0 AAA domain Laminin_II PF06009.12 gi|289582094|ref|YP_003480560.1| - 0.3 11.1 54.3 0.087 12.8 5.0 6.6 2 2 2 6 6 6 0 Laminin Domain II NPV_P10 PF05531.12 gi|289582094|ref|YP_003480560.1| - 0.56 10.7 41.0 0.11 12.9 0.6 8.5 5 3 3 8 8 8 0 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.9 gi|289582094|ref|YP_003480560.1| - 0.68 10.0 125.9 0.26 11.3 6.0 7.3 3 3 4 7 7 7 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|289582094|ref|YP_003480560.1| - 2 7.7 93.5 0.1 12.0 20.1 5.9 2 2 4 7 7 7 0 Growth-arrest specific micro-tubule binding Metallophos_2 PF12850.7 gi|289582095|ref|YP_003480561.1| - 3e-12 47.0 0.5 6.7e-12 45.9 0.1 1.8 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289582095|ref|YP_003480561.1| - 7.8e-12 46.1 0.2 1.3e-11 45.4 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Response_reg PF00072.24 gi|289582095|ref|YP_003480561.1| - 0.12 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain HTH_24 PF13412.6 gi|289582096|ref|YP_003480562.1| - 3.6e-06 26.4 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|289582096|ref|YP_003480562.1| - 0.00019 21.0 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|289582096|ref|YP_003480562.1| - 0.00067 19.5 0.0 0.00091 19.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|289582096|ref|YP_003480562.1| - 0.0053 16.6 0.0 0.0064 16.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|289582096|ref|YP_003480562.1| - 0.0072 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|289582096|ref|YP_003480562.1| - 0.026 14.5 0.0 0.031 14.2 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|289582096|ref|YP_003480562.1| - 0.073 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.10 gi|289582096|ref|YP_003480562.1| - 0.081 12.9 0.1 0.24 11.3 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|289582096|ref|YP_003480562.1| - 0.083 12.4 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|289582096|ref|YP_003480562.1| - 0.1 13.0 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|289582096|ref|YP_003480562.1| - 0.12 12.2 0.1 0.15 12.0 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.29 gi|289582097|ref|YP_003480563.1| - 3.9e-45 153.5 0.1 3.9e-45 153.5 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289582097|ref|YP_003480563.1| - 2.8e-12 46.2 1.5 9.6e-12 44.5 1.5 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|289582097|ref|YP_003480563.1| - 3.9e-09 36.9 0.0 1.5e-08 35.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|289582097|ref|YP_003480563.1| - 5e-07 29.8 0.4 4.5e-06 26.7 0.4 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|289582097|ref|YP_003480563.1| - 5.7e-07 29.4 0.0 1.7e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|289582097|ref|YP_003480563.1| - 6.8e-06 26.4 0.4 0.00089 19.5 0.0 2.8 1 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|289582097|ref|YP_003480563.1| - 1.3e-05 25.6 4.6 0.012 16.0 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|289582097|ref|YP_003480563.1| - 2.2e-05 24.9 5.2 0.00039 20.8 0.0 3.2 3 2 0 4 4 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|289582097|ref|YP_003480563.1| - 9.2e-05 23.0 0.4 0.0039 17.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|289582097|ref|YP_003480563.1| - 0.00021 20.5 0.0 0.00045 19.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|289582097|ref|YP_003480563.1| - 0.00023 20.5 1.1 0.0026 17.0 0.0 2.5 2 0 0 2 2 2 1 TIP49 P-loop domain GrpE PF01025.19 gi|289582097|ref|YP_003480563.1| - 0.00088 19.0 8.0 0.00088 19.0 8.0 2.1 2 0 0 2 2 1 1 GrpE AAA_14 PF13173.6 gi|289582097|ref|YP_003480563.1| - 0.001 19.1 0.7 0.0065 16.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|289582097|ref|YP_003480563.1| - 0.0011 18.8 0.6 0.0027 17.6 0.1 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain Mg_chelatase PF01078.21 gi|289582097|ref|YP_003480563.1| - 0.0014 18.1 0.2 0.0043 16.5 0.1 1.8 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|289582097|ref|YP_003480563.1| - 0.0026 18.1 0.0 0.0079 16.6 0.0 1.9 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|289582097|ref|YP_003480563.1| - 0.0029 17.4 0.0 0.0077 16.0 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|289582097|ref|YP_003480563.1| - 0.003 17.3 0.2 0.043 13.5 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_24 PF13479.6 gi|289582097|ref|YP_003480563.1| - 0.005 16.6 0.1 0.005 16.6 0.1 2.7 3 1 0 3 3 2 1 AAA domain Atg14 PF10186.9 gi|289582097|ref|YP_003480563.1| - 0.0055 15.8 1.5 0.0079 15.3 1.5 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2334 PF10096.9 gi|289582097|ref|YP_003480563.1| - 0.0057 16.3 0.1 0.0099 15.5 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) NACHT PF05729.12 gi|289582097|ref|YP_003480563.1| - 0.0067 16.4 0.2 0.1 12.5 0.0 2.7 2 1 1 3 3 2 1 NACHT domain AAA_33 PF13671.6 gi|289582097|ref|YP_003480563.1| - 0.0073 16.5 1.2 0.026 14.7 0.0 2.3 2 2 0 3 3 2 1 AAA domain TsaE PF02367.17 gi|289582097|ref|YP_003480563.1| - 0.0086 16.1 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|289582097|ref|YP_003480563.1| - 0.01 16.1 0.1 0.01 16.1 0.1 2.7 3 1 0 3 3 3 0 AAA domain TniB PF05621.11 gi|289582097|ref|YP_003480563.1| - 0.018 14.5 0.0 1.1 8.7 0.0 2.6 1 1 1 2 2 2 0 Bacterial TniB protein AAA_25 PF13481.6 gi|289582097|ref|YP_003480563.1| - 0.018 14.6 10.9 0.21 11.2 0.1 3.9 2 1 2 4 4 4 0 AAA domain ADIP PF11559.8 gi|289582097|ref|YP_003480563.1| - 0.025 14.7 7.2 0.061 13.4 7.2 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AAA_3 PF07726.11 gi|289582097|ref|YP_003480563.1| - 0.027 14.3 1.1 0.084 12.7 0.0 2.3 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|289582097|ref|YP_003480563.1| - 0.027 14.0 1.3 0.039 13.5 0.1 2.0 2 1 0 2 2 1 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|289582097|ref|YP_003480563.1| - 0.034 13.2 0.0 0.073 12.2 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|289582097|ref|YP_003480563.1| - 0.046 13.1 11.1 0.35 10.2 0.0 3.9 2 1 1 4 4 4 0 KaiC Creatininase PF02633.14 gi|289582097|ref|YP_003480563.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase bZIP_1 PF00170.21 gi|289582097|ref|YP_003480563.1| - 0.082 13.0 12.9 0.25 11.5 2.2 3.0 1 1 1 2 2 2 0 bZIP transcription factor Fungal_TACC PF12709.7 gi|289582097|ref|YP_003480563.1| - 0.19 12.2 6.8 0.12 12.9 4.3 2.0 2 0 0 2 2 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins ATPase_2 PF01637.18 gi|289582097|ref|YP_003480563.1| - 0.21 11.5 4.3 0.94 9.3 0.0 3.1 2 1 2 4 4 4 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|289582097|ref|YP_003480563.1| - 0.22 11.3 0.1 0.22 11.3 0.1 2.5 1 1 2 3 3 3 0 AAA domain Cep57_CLD_2 PF14197.6 gi|289582097|ref|YP_003480563.1| - 0.34 11.0 11.1 1 9.5 11.1 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 ABC_tran PF00005.27 gi|289582097|ref|YP_003480563.1| - 0.44 11.1 0.0 0.44 11.1 0.0 2.7 2 1 0 2 2 1 0 ABC transporter Mgr1 PF08602.10 gi|289582097|ref|YP_003480563.1| - 0.46 9.3 4.2 0.85 8.4 4.2 1.5 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit FapA PF03961.13 gi|289582097|ref|YP_003480563.1| - 1.1 7.8 9.3 1.8 7.1 9.3 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A NTPase_1 PF03266.15 gi|289582097|ref|YP_003480563.1| - 1.1 9.1 7.0 1.5 8.7 0.2 3.5 2 2 0 3 3 3 0 NTPase FlaC_arch PF05377.11 gi|289582097|ref|YP_003480563.1| - 2.8 8.4 8.4 39 4.7 0.2 3.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GAS PF13851.6 gi|289582097|ref|YP_003480563.1| - 3.6 6.9 16.8 3.8 6.8 15.5 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4407 PF14362.6 gi|289582097|ref|YP_003480563.1| - 3.9 6.8 8.9 0.94 8.8 5.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|289582097|ref|YP_003480563.1| - 6.3 7.3 16.4 0.83 10.2 11.1 2.2 2 0 0 2 2 1 0 Apg6 coiled-coil region CLZ PF16526.5 gi|289582097|ref|YP_003480563.1| - 6.3 7.2 10.9 1.4 9.4 6.3 2.4 2 0 0 2 2 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3987 PF13148.6 gi|289582097|ref|YP_003480563.1| - 6.6 5.6 7.8 12 4.7 6.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) GATase PF00117.28 gi|289582100|ref|YP_003480566.1| - 8.2e-35 120.3 0.0 9.6e-35 120.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289582100|ref|YP_003480566.1| - 3.1e-14 53.3 1.2 1.8e-12 47.5 0.1 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|289582100|ref|YP_003480566.1| - 0.08 12.5 0.2 0.19 11.3 0.2 1.8 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain LUD_dom PF02589.15 gi|289582101|ref|YP_003480567.1| - 7.3e-16 58.4 0.1 2e-15 57.0 0.0 1.6 1 1 1 2 2 2 1 LUD domain LUD_dom PF02589.15 gi|289582102|ref|YP_003480568.1| - 4.9e-45 153.6 0.3 7.5e-45 153.0 0.3 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|289582102|ref|YP_003480568.1| - 1.7e-08 34.8 3.8 4.2e-08 33.5 3.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289582102|ref|YP_003480568.1| - 3.3e-08 33.6 0.8 8.5e-08 32.2 0.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289582102|ref|YP_003480568.1| - 4e-08 33.3 3.5 0.00031 20.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289582102|ref|YP_003480568.1| - 5.8e-08 33.2 2.3 1.1e-07 32.3 2.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289582102|ref|YP_003480568.1| - 3.7e-07 30.2 2.7 1.4e-06 28.3 2.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289582102|ref|YP_003480568.1| - 8.5e-07 29.5 6.1 2.1e-06 28.2 6.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|289582102|ref|YP_003480568.1| - 6.9e-06 25.7 13.1 0.00037 20.2 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|289582102|ref|YP_003480568.1| - 0.00011 23.0 3.0 0.02 15.8 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|289582102|ref|YP_003480568.1| - 0.00016 21.6 12.7 0.001 19.0 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|289582102|ref|YP_003480568.1| - 0.00019 21.7 11.2 0.019 15.4 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain CCG PF02754.16 gi|289582102|ref|YP_003480568.1| - 0.00054 20.1 0.1 0.0016 18.6 0.1 1.9 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_18 PF13746.6 gi|289582102|ref|YP_003480568.1| - 0.00088 19.4 2.1 0.04 14.1 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289582102|ref|YP_003480568.1| - 0.00096 19.1 14.8 0.023 14.7 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|289582102|ref|YP_003480568.1| - 0.015 16.2 15.6 0.043 14.8 4.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|289582102|ref|YP_003480568.1| - 0.02 15.7 7.6 0.09 13.6 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|289582102|ref|YP_003480568.1| - 0.028 14.2 3.4 0.029 14.1 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UPF0180 PF03698.13 gi|289582102|ref|YP_003480568.1| - 0.14 12.4 0.6 0.52 10.5 0.5 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0180) GTP-bdg_N PF13167.6 gi|289582103|ref|YP_003480569.1| - 9.9e-22 77.4 0.0 2.4e-21 76.2 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|289582103|ref|YP_003480569.1| - 2.6e-14 53.3 0.4 7.2e-14 51.8 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|289582103|ref|YP_003480569.1| - 1.4e-07 31.2 0.0 3.9e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_M PF16360.5 gi|289582103|ref|YP_003480569.1| - 1.9e-07 31.6 4.7 2e-06 28.3 4.7 2.4 1 1 0 1 1 1 1 GTP-binding GTPase Middle Region AAA_33 PF13671.6 gi|289582103|ref|YP_003480569.1| - 3.1e-05 24.2 0.7 0.00027 21.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|289582103|ref|YP_003480569.1| - 0.00025 20.7 0.6 0.011 15.3 0.2 2.8 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|289582103|ref|YP_003480569.1| - 0.00039 20.4 0.2 0.095 12.6 0.0 2.7 3 0 0 3 3 3 1 RsgA GTPase Arf PF00025.21 gi|289582103|ref|YP_003480569.1| - 0.0036 16.8 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|289582103|ref|YP_003480569.1| - 0.0085 15.6 0.0 4 7.0 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B AAA_16 PF13191.6 gi|289582103|ref|YP_003480569.1| - 0.0091 16.4 1.6 0.0091 16.4 1.6 2.6 1 1 0 2 2 2 1 AAA ATPase domain DUF1949 PF09186.11 gi|289582103|ref|YP_003480569.1| - 0.032 14.1 0.1 3.7 7.5 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) AAA_22 PF13401.6 gi|289582103|ref|YP_003480569.1| - 0.04 14.2 0.0 1.9 8.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF4702 PF15774.5 gi|289582103|ref|YP_003480569.1| - 0.047 12.6 0.0 0.095 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4702) AAA_18 PF13238.6 gi|289582103|ref|YP_003480569.1| - 0.53 10.8 0.0 0.53 10.8 0.0 2.2 2 1 0 2 2 1 0 AAA domain DUF3194 PF11419.8 gi|289582104|ref|YP_003480570.1| - 4.1e-06 27.1 0.9 5.7e-06 26.6 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|289582105|ref|YP_003480571.1| - 7.8e-24 83.7 21.0 8.7e-24 83.5 21.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF5082 PF16888.5 gi|289582105|ref|YP_003480571.1| - 0.0021 18.3 11.2 0.0028 17.9 11.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|289582105|ref|YP_003480571.1| - 0.0056 17.0 2.8 0.0056 17.0 2.8 2.7 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF3584 PF12128.8 gi|289582105|ref|YP_003480571.1| - 0.019 12.6 9.7 0.023 12.3 9.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2379 PF09543.10 gi|289582105|ref|YP_003480571.1| - 0.032 14.4 2.5 0.032 14.4 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Prefoldin PF02996.17 gi|289582105|ref|YP_003480571.1| - 0.039 13.9 16.7 1.8 8.5 16.7 2.4 1 1 0 1 1 1 0 Prefoldin subunit FapA PF03961.13 gi|289582105|ref|YP_003480571.1| - 0.04 12.5 2.1 0.052 12.1 2.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Sec8_exocyst PF04048.14 gi|289582105|ref|YP_003480571.1| - 0.064 13.1 5.7 0.04 13.8 3.5 1.7 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain ERM PF00769.19 gi|289582105|ref|YP_003480571.1| - 0.082 12.7 17.8 0.11 12.3 17.8 1.0 1 0 0 1 1 1 0 Ezrin/radixin/moesin family XhlA PF10779.9 gi|289582105|ref|YP_003480571.1| - 0.085 13.1 0.8 0.085 13.1 0.8 2.4 2 0 0 2 2 2 0 Haemolysin XhlA DUF948 PF06103.11 gi|289582105|ref|YP_003480571.1| - 0.11 12.7 4.6 4.6 7.6 2.4 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|289582105|ref|YP_003480571.1| - 0.12 12.4 8.9 0.19 11.8 8.9 1.3 1 1 0 1 1 1 0 Laminin Domain II Leu_zip PF15294.6 gi|289582105|ref|YP_003480571.1| - 0.14 11.7 11.7 0.17 11.4 11.7 1.0 1 0 0 1 1 1 0 Leucine zipper DUF4831 PF16115.5 gi|289582105|ref|YP_003480571.1| - 0.34 9.9 6.5 0.41 9.7 6.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4831) DUF1826 PF08856.11 gi|289582105|ref|YP_003480571.1| - 0.42 10.5 3.9 0.66 9.8 3.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1826) DUF1216 PF06746.11 gi|289582105|ref|YP_003480571.1| - 0.46 10.5 7.1 0.31 11.0 5.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1216) Sec34 PF04136.15 gi|289582105|ref|YP_003480571.1| - 0.56 10.1 13.6 0.2 11.5 1.0 2.1 1 1 1 2 2 2 0 Sec34-like family CorA PF01544.18 gi|289582105|ref|YP_003480571.1| - 0.61 9.4 9.4 0.78 9.0 9.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Prominin PF05478.11 gi|289582105|ref|YP_003480571.1| - 1.4 6.8 4.8 1.7 6.5 4.8 1.0 1 0 0 1 1 1 0 Prominin DHR10 PF18595.1 gi|289582105|ref|YP_003480571.1| - 1.5 8.9 23.8 0.12 12.5 5.6 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain DUF724 PF05266.14 gi|289582105|ref|YP_003480571.1| - 1.9 8.3 11.1 2.4 7.9 11.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) NPV_P10 PF05531.12 gi|289582105|ref|YP_003480571.1| - 1.9 9.0 8.9 0.9 10.0 0.6 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FUSC PF04632.12 gi|289582105|ref|YP_003480571.1| - 2.1 6.8 3.7 2.6 6.5 3.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Flagellin_N PF00669.20 gi|289582105|ref|YP_003480571.1| - 3.1 7.9 11.5 2.5 8.2 7.4 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region CLZ PF16526.5 gi|289582105|ref|YP_003480571.1| - 3.7 8.0 14.9 0.061 13.7 4.1 2.5 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spc24 PF08286.11 gi|289582105|ref|YP_003480571.1| - 4 7.7 17.7 2.1 8.6 3.4 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF572 PF04502.13 gi|289582105|ref|YP_003480571.1| - 4.2 6.9 10.2 5.9 6.4 10.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) DUF4140 PF13600.6 gi|289582105|ref|YP_003480571.1| - 4.4 7.8 17.5 5.1e+02 1.2 17.5 2.3 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HemX PF04375.14 gi|289582105|ref|YP_003480571.1| - 5.7 6.1 19.0 0.81 8.9 1.4 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase PRP9_N PF16958.5 gi|289582105|ref|YP_003480571.1| - 8.6 6.4 11.9 14 5.6 11.9 1.4 1 1 0 1 1 1 0 Pre-mRNA-splicing factor PRP9 N-terminus Seryl_tRNA_N PF02403.22 gi|289582105|ref|YP_003480571.1| - 9.3 6.5 13.4 7.6 6.8 4.0 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Pcc1 PF09341.10 gi|289582107|ref|YP_003480573.1| - 2e-11 43.9 0.5 2.2e-11 43.7 0.5 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|289582108|ref|YP_003480574.1| - 1.9e-10 40.2 6.8 2.3e-10 39.9 6.8 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|289582108|ref|YP_003480574.1| - 5.8e-05 22.3 0.2 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|289582108|ref|YP_003480574.1| - 0.00071 19.6 0.5 0.00076 19.5 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|289582108|ref|YP_003480574.1| - 0.00095 18.7 1.7 0.21 11.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|289582108|ref|YP_003480574.1| - 0.0036 17.2 4.6 0.077 13.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|289582108|ref|YP_003480574.1| - 0.0037 17.3 0.5 0.0065 16.5 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.6 gi|289582108|ref|YP_003480574.1| - 0.0057 16.3 2.2 0.17 11.6 0.3 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|289582108|ref|YP_003480574.1| - 0.0067 16.4 1.1 0.014 15.4 1.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|289582108|ref|YP_003480574.1| - 0.0077 15.9 1.0 0.7 9.7 2.3 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain YacG PF03884.14 gi|289582108|ref|YP_003480574.1| - 0.012 15.3 0.2 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RNHCP PF12647.7 gi|289582108|ref|YP_003480574.1| - 0.014 15.4 0.3 0.015 15.3 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|289582108|ref|YP_003480574.1| - 0.017 14.7 2.2 0.84 9.2 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|289582108|ref|YP_003480574.1| - 0.023 14.6 0.2 0.092 12.7 0.0 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|289582108|ref|YP_003480574.1| - 0.031 14.7 0.7 0.081 13.3 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|289582108|ref|YP_003480574.1| - 0.036 14.0 0.8 0.056 13.4 0.8 1.3 1 1 0 1 1 1 0 zinc-ribbons Anti-TRAP PF15777.5 gi|289582108|ref|YP_003480574.1| - 0.044 13.8 0.1 0.049 13.6 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF951 PF06107.11 gi|289582108|ref|YP_003480574.1| - 0.051 13.5 0.5 3 7.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|289582108|ref|YP_003480574.1| - 0.059 13.7 0.1 0.48 10.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_13 PF09855.9 gi|289582108|ref|YP_003480574.1| - 0.061 13.5 0.7 0.15 12.2 0.1 1.7 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF3268 PF11672.8 gi|289582108|ref|YP_003480574.1| - 0.1 13.0 1.2 0.37 11.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain OrfB_Zn_ribbon PF07282.11 gi|289582108|ref|YP_003480574.1| - 0.11 12.4 3.2 0.2 11.6 3.1 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|289582108|ref|YP_003480574.1| - 0.12 11.9 3.4 0.81 9.3 3.9 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|289582108|ref|YP_003480574.1| - 0.17 12.0 1.2 0.43 10.6 0.2 1.8 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|289582108|ref|YP_003480574.1| - 0.22 11.7 4.2 0.52 10.5 4.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|289582108|ref|YP_003480574.1| - 0.41 10.6 5.7 17 5.4 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|289582108|ref|YP_003480574.1| - 0.59 10.3 1.8 0.79 9.9 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin Ribosomal_L37ae PF01780.19 gi|289582109|ref|YP_003480575.1| - 8.2e-23 80.3 0.1 9.5e-23 80.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF2103 PF09876.9 gi|289582111|ref|YP_003480577.1| - 5.1e-40 135.4 0.2 8.3e-40 134.7 0.2 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF3426 PF11906.8 gi|289582112|ref|YP_003480578.1| - 0.0027 17.9 0.0 0.0082 16.3 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) DUF2393 PF09624.10 gi|289582112|ref|YP_003480578.1| - 0.034 14.1 0.0 0.062 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) Polysacc_synt_3 PF13440.6 gi|289582113|ref|YP_003480579.1| - 2.8e-27 95.7 16.6 2.8e-27 95.7 16.6 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|289582113|ref|YP_003480579.1| - 1.1e-26 93.9 25.8 1.1e-26 93.9 25.8 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|289582113|ref|YP_003480579.1| - 2.4e-11 43.9 17.6 2.4e-11 43.9 17.6 4.7 2 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|289582114|ref|YP_003480580.1| - 3.1e-58 196.0 33.3 1.2e-34 119.3 12.1 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|289582114|ref|YP_003480580.1| - 1.3e-06 28.6 15.0 1.3e-06 28.6 15.0 5.3 2 2 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Beta-lactamase PF00144.24 gi|289582115|ref|YP_003480581.1| - 1.7e-62 211.6 0.8 2.2e-62 211.2 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|289582115|ref|YP_003480581.1| - 5.4e-35 119.4 0.0 1.1e-34 118.3 0.0 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain Topoisom_bac PF01131.20 gi|289582117|ref|YP_003480583.1| - 2e-121 405.9 0.0 2.5e-121 405.5 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|289582117|ref|YP_003480583.1| - 1.1e-20 73.1 14.7 1e-13 50.8 0.9 3.7 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|289582117|ref|YP_003480583.1| - 1.5e-16 60.5 0.1 3e-16 59.5 0.1 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|289582117|ref|YP_003480583.1| - 1.7e-09 38.2 0.2 7.1e-09 36.1 0.2 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|289582117|ref|YP_003480583.1| - 0.0045 16.8 0.0 0.018 14.8 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|289582117|ref|YP_003480583.1| - 0.009 16.2 0.0 0.024 14.9 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|289582117|ref|YP_003480583.1| - 0.067 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH PF00633.23 gi|289582117|ref|YP_003480583.1| - 0.092 12.7 0.1 0.48 10.4 0.1 2.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif HEXIM PF15313.6 gi|289582117|ref|YP_003480583.1| - 1.3 9.2 4.7 0.46 10.7 0.5 2.2 1 1 1 2 2 2 0 Hexamethylene bis-acetamide-inducible protein Thioredoxin_8 PF13905.6 gi|289582118|ref|YP_003480584.1| - 1.5e-11 44.5 0.0 2.2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|289582118|ref|YP_003480584.1| - 2.1e-08 34.2 0.0 3.2e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289582118|ref|YP_003480584.1| - 7e-08 32.3 0.0 1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|289582118|ref|YP_003480584.1| - 9.7e-08 31.9 0.0 2.3e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|289582118|ref|YP_003480584.1| - 9.2e-07 29.3 0.0 1.5e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|289582118|ref|YP_003480584.1| - 0.048 13.5 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein SCO1-SenC PF02630.14 gi|289582118|ref|YP_003480584.1| - 0.07 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC NPR3 PF03666.13 gi|289582118|ref|YP_003480584.1| - 0.15 10.8 3.0 0.2 10.4 3.0 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 AhpC-TSA PF00578.21 gi|289582119|ref|YP_003480585.1| - 0.0026 17.7 0.0 0.006 16.5 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|289582119|ref|YP_003480585.1| - 0.017 14.8 0.0 0.035 13.8 0.0 1.5 2 0 0 2 2 2 0 Redoxin DUF4598 PF15370.6 gi|289582119|ref|YP_003480585.1| - 0.12 12.9 1.9 0.44 11.0 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4598) CENP-B_dimeris PF09026.10 gi|289582119|ref|YP_003480585.1| - 0.5 10.8 10.4 3.8 8.0 2.0 2.2 2 0 0 2 2 2 0 Centromere protein B dimerisation domain Methyltransf_11 PF08241.12 gi|289582120|ref|YP_003480586.1| - 1e-17 64.6 0.0 1.6e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289582120|ref|YP_003480586.1| - 3.1e-14 53.4 0.0 5.1e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289582120|ref|YP_003480586.1| - 1.7e-06 27.6 0.0 2.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|289582120|ref|YP_003480586.1| - 2.2e-06 27.5 0.0 2.7e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582120|ref|YP_003480586.1| - 7.4e-05 23.4 0.0 0.00012 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582120|ref|YP_003480586.1| - 0.00011 22.1 0.0 0.00019 21.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|289582120|ref|YP_003480586.1| - 0.013 15.5 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_9 PF08003.11 gi|289582120|ref|YP_003480586.1| - 0.017 14.0 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DREV PF05219.12 gi|289582120|ref|YP_003480586.1| - 0.047 12.8 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase MTS PF05175.14 gi|289582120|ref|YP_003480586.1| - 0.058 13.0 0.0 0.51 9.9 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase small domain Aldedh PF00171.22 gi|289582121|ref|YP_003480587.1| - 1.9e-177 590.4 0.0 2.2e-177 590.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Eapp_C PF10238.9 gi|289582123|ref|YP_003480589.1| - 6 6.9 9.3 7 6.7 2.0 2.1 2 0 0 2 2 2 0 E2F-associated phosphoprotein LysE PF01810.18 gi|289582124|ref|YP_003480590.1| - 1.6e-22 79.9 3.8 1.6e-22 79.9 3.8 2.1 1 1 1 2 2 2 1 LysE type translocator DUF1134 PF06577.12 gi|289582124|ref|YP_003480590.1| - 0.012 15.3 0.1 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1134) CAAD PF14159.6 gi|289582124|ref|YP_003480590.1| - 9.3 6.2 9.9 0.11 12.4 1.4 2.2 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase HD PF01966.22 gi|289582126|ref|YP_003480592.1| - 1.6e-15 57.4 0.9 3e-15 56.5 0.9 1.4 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|289582126|ref|YP_003480592.1| - 0.0058 15.6 0.1 0.0095 14.9 0.1 1.4 1 0 0 1 1 1 1 Putative helicase HD_4 PF13328.6 gi|289582126|ref|YP_003480592.1| - 0.032 14.0 0.3 0.064 13.0 0.3 1.4 1 0 0 1 1 1 0 HD domain CarboxypepD_reg PF13620.6 gi|289582127|ref|YP_003480593.1| - 3.1e-45 152.3 29.3 6.5e-18 64.8 1.1 7.0 6 1 0 6 6 5 3 Carboxypeptidase regulatory-like domain Peptidase_S8 PF00082.22 gi|289582127|ref|YP_003480593.1| - 2e-42 145.5 0.4 6.6e-42 143.8 0.4 2.0 1 0 0 1 1 1 1 Subtilase family CarbopepD_reg_2 PF13715.6 gi|289582127|ref|YP_003480593.1| - 6.4e-29 99.8 5.9 3.1e-13 49.5 0.1 4.7 4 0 0 4 4 4 3 CarboxypepD_reg-like domain CARDB PF07705.11 gi|289582127|ref|YP_003480593.1| - 1.2e-17 64.0 26.3 4.4e-05 23.7 0.5 7.1 7 1 0 7 7 6 5 CARDB SdrD_B PF17210.3 gi|289582127|ref|YP_003480593.1| - 2.8e-09 37.2 13.7 4.4e-05 23.7 0.7 4.8 1 1 2 3 3 3 2 SdrD B-like domain DUF2012 PF09430.10 gi|289582127|ref|YP_003480593.1| - 5.2e-09 36.3 0.4 0.00085 19.4 0.0 3.7 2 1 1 3 3 3 2 Protein of unknown function (DUF2012) PEGA PF08308.11 gi|289582127|ref|YP_003480593.1| - 6.6e-09 35.5 0.2 0.00048 20.0 0.0 4.7 4 0 0 4 4 4 2 PEGA domain fn3_3 PF14686.6 gi|289582127|ref|YP_003480593.1| - 3.3e-08 33.2 9.8 0.0086 15.8 0.1 4.8 5 0 0 5 5 5 3 Polysaccharide lyase family 4, domain II Dockerin_1 PF00404.18 gi|289582127|ref|YP_003480593.1| - 3e-07 30.5 2.1 3e-07 30.5 2.1 2.4 2 0 0 2 2 1 1 Dockerin type I domain DUF11 PF01345.18 gi|289582127|ref|YP_003480593.1| - 6.8e-07 29.5 17.1 0.018 15.3 0.6 7.1 5 2 0 6 6 6 1 Domain of unknown function DUF11 SpaA PF17802.1 gi|289582127|ref|YP_003480593.1| - 0.00021 21.6 1.9 0.00021 21.6 1.9 6.7 5 2 0 6 6 5 1 Prealbumin-like fold domain DUF916 PF06030.12 gi|289582127|ref|YP_003480593.1| - 0.00049 20.1 1.2 14 5.8 0.1 5.3 5 1 1 6 6 6 0 Bacterial protein of unknown function (DUF916) A2M PF00207.22 gi|289582127|ref|YP_003480593.1| - 0.00051 19.8 0.0 4 7.4 0.0 4.0 4 0 0 4 4 4 1 Alpha-2-macroglobulin family SoxY PF13501.6 gi|289582127|ref|YP_003480593.1| - 0.00088 19.5 0.1 1.2 9.3 0.0 3.9 3 0 0 3 3 3 1 Sulfur oxidation protein SoxY Big_7 PF17957.1 gi|289582127|ref|YP_003480593.1| - 0.0046 17.7 3.6 0.0074 17.0 2.1 9.0 8 1 1 9 9 9 3 Bacterial Ig domain DUF4832 PF16116.5 gi|289582127|ref|YP_003480593.1| - 0.0053 16.6 0.0 8.8 6.1 0.0 4.7 5 1 0 5 5 5 0 Domain of unknown function (DUF4832) TTR-52 PF01060.23 gi|289582127|ref|YP_003480593.1| - 0.0066 17.1 1.1 25 5.6 0.1 3.9 3 0 0 3 3 3 0 Transthyretin-like family BsuPI PF12690.7 gi|289582127|ref|YP_003480593.1| - 0.014 15.4 3.9 13 5.9 0.0 4.8 5 0 0 5 5 4 0 Intracellular proteinase inhibitor MetallophosN PF16371.5 gi|289582127|ref|YP_003480593.1| - 0.019 15.2 3.4 0.83 10.0 0.0 3.4 3 0 0 3 3 3 0 N terminal of Calcineurin-like phosphoesterase NPCBM_assoc PF10633.9 gi|289582127|ref|YP_003480593.1| - 0.024 14.9 0.5 0.024 14.9 0.5 8.5 9 1 0 9 9 9 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Fn3-like PF14310.6 gi|289582127|ref|YP_003480593.1| - 0.03 14.4 7.7 27 5.0 0.0 6.4 6 0 0 6 6 5 0 Fibronectin type III-like domain CBM_4_9 PF02018.17 gi|289582127|ref|YP_003480593.1| - 0.12 12.6 2.4 1.4 9.1 0.2 3.4 3 0 0 3 3 2 0 Carbohydrate binding domain DUF824 PF05688.11 gi|289582127|ref|YP_003480593.1| - 2.4 8.1 6.8 72 3.3 0.2 4.8 5 0 0 5 5 4 0 Salmonella repeat of unknown function (DUF824) B12-binding PF02310.19 gi|289582128|ref|YP_003480594.1| - 2.2e-23 82.6 0.5 2.5e-23 82.4 0.5 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.11 gi|289582128|ref|YP_003480594.1| - 0.039 13.7 0.1 0.09 12.6 0.1 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein BcrAD_BadFG PF01869.20 gi|289582128|ref|YP_003480594.1| - 0.076 12.5 0.0 0.13 11.7 0.0 1.3 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family MeaB PF03308.16 gi|289582129|ref|YP_003480595.1| - 7.5e-91 303.8 4.5 9.6e-91 303.5 4.5 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|289582129|ref|YP_003480595.1| - 7.1e-07 29.0 1.4 7.5e-06 25.6 1.4 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|289582129|ref|YP_003480595.1| - 5.2e-06 26.2 0.4 1.9e-05 24.4 0.3 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|289582129|ref|YP_003480595.1| - 4.7e-05 23.3 0.0 0.00012 22.0 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|289582129|ref|YP_003480595.1| - 8e-05 22.4 0.0 0.00021 21.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|289582129|ref|YP_003480595.1| - 9.8e-05 22.3 0.1 0.00027 20.9 0.1 1.7 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.27 gi|289582129|ref|YP_003480595.1| - 0.00019 21.0 0.0 0.51 9.8 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|289582129|ref|YP_003480595.1| - 0.00057 20.4 0.1 0.0011 19.5 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|289582129|ref|YP_003480595.1| - 0.0008 19.8 0.4 0.005 17.2 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|289582129|ref|YP_003480595.1| - 0.00095 19.5 0.1 0.0031 17.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|289582129|ref|YP_003480595.1| - 0.001 19.6 0.3 0.01 16.3 0.1 2.5 3 0 0 3 3 2 1 AAA domain AAA_29 PF13555.6 gi|289582129|ref|YP_003480595.1| - 0.0029 17.3 0.1 0.0084 15.8 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|289582129|ref|YP_003480595.1| - 0.0039 16.5 0.0 0.0096 15.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|289582129|ref|YP_003480595.1| - 0.0052 17.0 1.0 0.016 15.5 0.2 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|289582129|ref|YP_003480595.1| - 0.0054 16.6 0.2 0.035 14.0 0.0 2.3 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.14 gi|289582129|ref|YP_003480595.1| - 0.009 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 KAP family P-loop domain TrwB_AAD_bind PF10412.9 gi|289582129|ref|YP_003480595.1| - 0.0099 14.8 0.1 0.024 13.5 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Ploopntkinase3 PF18751.1 gi|289582129|ref|YP_003480595.1| - 0.015 15.2 0.4 0.076 12.9 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 Polysacc_deac_2 PF04748.13 gi|289582129|ref|YP_003480595.1| - 0.016 14.4 0.0 0.07 12.3 0.0 1.9 2 0 0 2 2 2 0 Divergent polysaccharide deacetylase Imm5 PF14423.6 gi|289582129|ref|YP_003480595.1| - 0.017 15.4 0.3 0.033 14.4 0.3 1.5 1 0 0 1 1 1 0 Immunity protein Imm5 AAA_17 PF13207.6 gi|289582129|ref|YP_003480595.1| - 0.017 15.5 0.2 0.084 13.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|289582129|ref|YP_003480595.1| - 0.018 15.1 0.1 0.044 13.9 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|289582129|ref|YP_003480595.1| - 0.02 14.8 0.0 0.093 12.6 0.0 2.2 3 0 0 3 3 2 0 RsgA GTPase KTI12 PF08433.10 gi|289582129|ref|YP_003480595.1| - 0.021 14.3 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.18 gi|289582129|ref|YP_003480595.1| - 0.022 14.5 0.1 0.052 13.3 0.1 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|289582129|ref|YP_003480595.1| - 0.027 14.6 0.2 0.19 11.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain ParA PF10609.9 gi|289582129|ref|YP_003480595.1| - 0.034 13.6 0.7 0.47 9.9 0.1 2.1 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase NACHT PF05729.12 gi|289582129|ref|YP_003480595.1| - 0.041 13.8 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|289582129|ref|YP_003480595.1| - 0.041 14.2 0.4 0.14 12.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|289582129|ref|YP_003480595.1| - 0.052 13.6 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.22 gi|289582129|ref|YP_003480595.1| - 0.072 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase PF06745.13 gi|289582129|ref|YP_003480595.1| - 0.094 12.1 0.1 0.19 11.0 0.1 1.6 1 0 0 1 1 1 0 KaiC DUF815 PF05673.13 gi|289582129|ref|YP_003480595.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|289582129|ref|YP_003480595.1| - 0.16 11.6 2.1 0.78 9.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|289582129|ref|YP_003480595.1| - 0.17 11.6 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Abhydrolase_6 PF12697.7 gi|289582130|ref|YP_003480596.1| - 4.3e-26 92.9 10.1 4.3e-26 92.9 10.1 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|289582130|ref|YP_003480596.1| - 4.6e-09 36.3 0.0 2.5e-07 30.6 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289582130|ref|YP_003480596.1| - 3.2e-06 26.6 0.0 0.00025 20.4 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 NAD_synthase PF02540.17 gi|289582131|ref|YP_003480597.1| - 4.1e-69 232.4 0.1 4.8e-69 232.1 0.1 1.0 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|289582131|ref|YP_003480597.1| - 1.3e-06 28.0 0.0 4.9e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|289582131|ref|YP_003480597.1| - 7.1e-06 25.0 0.0 0.0012 17.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|289582131|ref|YP_003480597.1| - 0.00014 21.7 0.0 0.00028 20.7 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|289582131|ref|YP_003480597.1| - 0.058 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 PP-loop family OB_aCoA_assoc PF01796.17 gi|289582132|ref|YP_003480598.1| - 5.9e-16 58.2 1.1 8.6e-16 57.7 1.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|289582132|ref|YP_003480598.1| - 1e-05 25.3 0.5 1.8e-05 24.5 0.5 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|289582132|ref|YP_003480598.1| - 0.064 12.8 0.2 0.18 11.3 0.1 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding TackOD1 PF18551.1 gi|289582132|ref|YP_003480598.1| - 0.087 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Thiolase_N PF00108.23 gi|289582133|ref|YP_003480599.1| - 5e-27 94.9 1.6 5.8e-27 94.7 0.5 1.7 2 1 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|289582133|ref|YP_003480599.1| - 4.7e-10 39.5 6.9 2.9e-09 36.9 1.9 3.2 3 1 1 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|289582133|ref|YP_003480599.1| - 2.3e-09 36.9 0.4 6.2e-09 35.6 0.4 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|289582133|ref|YP_003480599.1| - 0.0082 16.0 0.8 3.3 7.6 0.2 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|289582133|ref|YP_003480599.1| - 0.05 13.6 3.8 0.32 11.0 2.2 3.0 2 2 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain Peptidase_M42 PF05343.14 gi|289582134|ref|YP_003480600.1| - 3.6e-91 305.2 0.5 4.2e-91 305.0 0.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|289582134|ref|YP_003480600.1| - 2.9e-09 36.9 0.1 3.1e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|289582134|ref|YP_003480600.1| - 1.5e-08 34.6 0.3 2.4e-08 33.9 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|289582134|ref|YP_003480600.1| - 6.4e-05 21.9 0.0 0.073 11.9 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) TrkA_N PF02254.18 gi|289582135|ref|YP_003480601.1| - 1.9e-47 160.3 7.8 2.1e-25 89.2 3.0 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|289582135|ref|YP_003480601.1| - 1.1e-28 98.9 4.7 2.7e-14 52.7 0.2 2.7 2 0 0 2 2 2 2 TrkA-C domain Shikimate_DH PF01488.20 gi|289582135|ref|YP_003480601.1| - 2.1e-10 40.8 0.2 7.7e-05 22.8 0.0 2.7 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|289582135|ref|YP_003480601.1| - 6e-10 39.5 3.2 8.2e-05 23.0 0.8 2.7 3 0 0 3 3 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|289582135|ref|YP_003480601.1| - 5.6e-08 32.3 1.6 3.6e-06 26.4 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|289582135|ref|YP_003480601.1| - 4.2e-07 30.0 7.6 2.5e-05 24.3 0.0 3.1 3 0 0 3 3 3 2 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|289582135|ref|YP_003480601.1| - 2.2e-06 27.9 3.1 0.0088 16.3 0.4 2.8 3 1 0 3 3 2 2 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|289582135|ref|YP_003480601.1| - 1.1e-05 24.9 2.8 0.00013 21.3 2.8 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|289582135|ref|YP_003480601.1| - 3.1e-05 24.5 1.5 0.2 12.3 0.0 3.2 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent Castor_Poll_mid PF06241.12 gi|289582135|ref|YP_003480601.1| - 3.5e-05 23.7 0.6 0.054 13.5 0.0 2.8 3 0 0 3 3 2 2 Castor and Pollux, part of voltage-gated ion channel Pyr_redox PF00070.27 gi|289582135|ref|YP_003480601.1| - 0.00014 22.3 0.4 0.28 11.7 0.0 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|289582135|ref|YP_003480601.1| - 0.00035 20.5 0.2 0.11 12.4 0.2 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|289582135|ref|YP_003480601.1| - 0.0004 20.6 0.0 0.11 12.6 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|289582135|ref|YP_003480601.1| - 0.0012 18.5 0.1 0.0066 16.0 0.8 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|289582135|ref|YP_003480601.1| - 0.0012 18.2 0.1 0.042 13.1 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain ApbA PF02558.16 gi|289582135|ref|YP_003480601.1| - 0.0013 18.4 0.1 0.033 13.8 0.0 2.6 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 gi|289582135|ref|YP_003480601.1| - 0.0026 17.2 0.4 0.03 13.8 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase XdhC_C PF13478.6 gi|289582135|ref|YP_003480601.1| - 0.0034 17.9 0.4 0.6 10.6 0.0 2.8 2 1 0 2 2 2 1 XdhC Rossmann domain GCV_T PF01571.21 gi|289582135|ref|YP_003480601.1| - 0.0086 15.5 0.2 0.015 14.7 0.2 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GFO_IDH_MocA PF01408.22 gi|289582135|ref|YP_003480601.1| - 0.012 16.4 0.1 7.2 7.5 0.0 2.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold HEM4 PF02602.15 gi|289582135|ref|YP_003480601.1| - 0.016 14.5 0.1 0.032 13.6 0.1 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD 2-Hacid_dh_C PF02826.19 gi|289582135|ref|YP_003480601.1| - 0.019 14.3 0.0 1.2 8.5 0.0 2.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|289582135|ref|YP_003480601.1| - 0.057 13.0 0.2 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DAO PF01266.24 gi|289582135|ref|YP_003480601.1| - 0.38 10.3 2.1 5.5 6.5 0.4 2.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase Se-cys_synth_N PF12390.8 gi|289582135|ref|YP_003480601.1| - 5.3 7.4 7.4 12 6.2 0.1 3.6 3 0 0 3 3 3 0 Selenocysteine synthase N terminal Polyketide_cyc2 PF10604.9 gi|289582136|ref|YP_003480602.1| - 8.8e-09 35.8 0.3 1.1e-08 35.5 0.3 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|289582136|ref|YP_003480602.1| - 3.8e-05 23.9 0.3 6.3e-05 23.2 0.3 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Pyr_redox_2 PF07992.14 gi|289582137|ref|YP_003480603.1| - 1.6e-11 44.0 3.6 2.3e-05 23.8 0.6 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289582137|ref|YP_003480603.1| - 2.3e-07 30.2 4.8 1.6e-05 24.2 2.2 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|289582137|ref|YP_003480603.1| - 2.1e-05 24.3 8.9 0.0065 16.1 3.2 2.6 1 1 2 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289582137|ref|YP_003480603.1| - 0.00013 20.8 0.2 0.0013 17.6 0.7 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|289582137|ref|YP_003480603.1| - 0.00017 21.7 0.2 0.00045 20.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|289582137|ref|YP_003480603.1| - 0.00026 20.4 2.7 0.00041 19.8 2.7 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|289582137|ref|YP_003480603.1| - 0.0003 20.0 0.5 0.0003 20.0 0.5 1.4 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|289582137|ref|YP_003480603.1| - 0.00034 20.0 0.7 0.00064 19.1 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|289582137|ref|YP_003480603.1| - 0.00038 19.8 0.2 0.0089 15.3 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|289582137|ref|YP_003480603.1| - 0.002 17.2 0.5 0.014 14.4 0.3 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|289582137|ref|YP_003480603.1| - 0.0058 15.9 0.1 0.011 15.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|289582137|ref|YP_003480603.1| - 0.22 10.7 0.5 0.39 9.9 0.5 1.4 1 0 0 1 1 1 0 Thi4 family DFP PF04127.15 gi|289582138|ref|YP_003480604.1| - 6.3e-51 172.9 3.0 5.6e-50 169.8 1.3 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|289582138|ref|YP_003480604.1| - 1.1e-34 119.5 0.2 1.7e-34 118.8 0.2 1.4 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 gi|289582138|ref|YP_003480604.1| - 0.0058 16.1 4.6 0.065 12.6 0.9 2.6 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme Reticulon PF02453.17 gi|289582139|ref|YP_003480605.1| - 0.033 14.2 0.3 0.047 13.7 0.3 1.2 1 0 0 1 1 1 0 Reticulon PhyH PF05721.13 gi|289582139|ref|YP_003480605.1| - 0.1 12.9 0.5 0.17 12.2 0.5 1.3 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) Menin PF05053.13 gi|289582139|ref|YP_003480605.1| - 0.17 10.2 2.8 0.2 10.0 2.8 1.1 1 0 0 1 1 1 0 Menin RPN2_C PF18004.1 gi|289582139|ref|YP_003480605.1| - 2.1 8.2 7.1 3.5 7.5 7.1 1.3 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN2 C-terminal domain DUF4632 PF15451.6 gi|289582139|ref|YP_003480605.1| - 5.2 7.2 6.0 0.29 11.2 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4632) SURF2 PF05477.11 gi|289582139|ref|YP_003480605.1| - 7 6.3 8.2 9 5.9 8.2 1.1 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) Pribosyltran PF00156.27 gi|289582140|ref|YP_003480606.1| - 1.1e-16 60.8 3.4 1.5e-16 60.3 3.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|289582140|ref|YP_003480606.1| - 0.00076 19.0 0.2 0.00096 18.7 0.2 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4131 PF13567.6 gi|289582142|ref|YP_003480608.1| - 0.0031 17.2 0.1 0.0044 16.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF2721 PF11026.8 gi|289582142|ref|YP_003480608.1| - 0.54 10.2 6.1 0.067 13.1 1.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) ABC_tran PF00005.27 gi|289582143|ref|YP_003480609.1| - 1.4e-33 116.3 0.0 2.1e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289582143|ref|YP_003480609.1| - 4.2e-15 56.0 0.4 9.3e-15 54.9 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289582143|ref|YP_003480609.1| - 0.00026 20.9 1.3 0.12 12.1 0.2 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289582143|ref|YP_003480609.1| - 0.00086 19.6 0.2 0.0036 17.6 0.2 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289582143|ref|YP_003480609.1| - 0.0029 17.1 0.0 0.0052 16.3 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|289582143|ref|YP_003480609.1| - 0.02 14.8 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|289582143|ref|YP_003480609.1| - 0.023 14.5 0.2 0.054 13.2 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|289582143|ref|YP_003480609.1| - 0.028 14.5 0.0 0.07 13.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|289582143|ref|YP_003480609.1| - 0.028 14.8 0.1 0.08 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|289582143|ref|YP_003480609.1| - 0.087 12.4 0.2 7.2 6.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|289582143|ref|YP_003480609.1| - 0.089 12.8 0.3 2.9 7.9 0.3 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|289582143|ref|YP_003480609.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 gi|289582143|ref|YP_003480609.1| - 0.38 9.4 0.2 2.4 6.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|289582144|ref|YP_003480610.1| - 1e-26 94.0 0.0 4.7e-15 56.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|289582144|ref|YP_003480610.1| - 8.2e-18 64.7 0.2 1.6e-17 63.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289582144|ref|YP_003480610.1| - 1.2e-07 31.9 0.0 1.1e-06 28.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289582144|ref|YP_003480610.1| - 0.00017 21.1 0.2 0.02 14.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289582144|ref|YP_003480610.1| - 0.003 17.8 0.1 0.34 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289582144|ref|YP_003480610.1| - 0.033 14.6 0.0 0.07 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|289582144|ref|YP_003480610.1| - 0.053 13.3 0.1 0.098 12.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|289582144|ref|YP_003480610.1| - 0.11 12.6 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 gi|289582145|ref|YP_003480611.1| - 3.6e-17 62.7 6.4 3.6e-17 62.7 6.4 3.4 3 2 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289582145|ref|YP_003480611.1| - 9.2e-06 25.5 0.0 9.2e-06 25.5 0.0 4.5 4 0 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|289582146|ref|YP_003480612.1| - 6.4e-33 114.0 17.7 6.4e-33 114.0 17.7 2.4 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF3593 PF12159.8 gi|289582146|ref|YP_003480612.1| - 0.82 9.7 0.0 0.82 9.7 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3593) SBP_bac_5 PF00496.22 gi|289582147|ref|YP_003480613.1| - 1.1e-63 215.5 0.4 1.4e-63 215.2 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|289582147|ref|YP_003480613.1| - 8.3e-08 31.8 1.1 1.3e-07 31.1 1.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TRM PF02005.16 gi|289582147|ref|YP_003480613.1| - 0.14 11.3 0.1 0.22 10.6 0.1 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase SBP_bac_5 PF00496.22 gi|289582148|ref|YP_003480614.1| - 7.5e-48 163.4 7.0 1.1e-47 162.9 7.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|289582149|ref|YP_003480615.1| - 5.5e-32 111.0 12.9 5.5e-32 111.0 12.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|289582150|ref|YP_003480616.1| - 4.4e-27 95.0 13.8 4.4e-27 95.0 13.8 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289582150|ref|YP_003480616.1| - 4.6e-09 36.1 0.1 4.6e-09 36.1 0.1 3.8 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ThrE PF06738.12 gi|289582150|ref|YP_003480616.1| - 0.0042 16.5 1.1 0.0042 16.5 1.1 2.2 1 1 1 2 2 2 1 Putative threonine/serine exporter ABC_tran PF00005.27 gi|289582151|ref|YP_003480617.1| - 8.4e-26 91.1 0.0 1.7e-25 90.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter oligo_HPY PF08352.12 gi|289582151|ref|YP_003480617.1| - 5.6e-17 62.0 0.2 1.4e-16 60.7 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|289582151|ref|YP_003480617.1| - 2.7e-07 30.3 0.0 6.8e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|289582151|ref|YP_003480617.1| - 9.6e-07 28.9 0.3 0.00025 20.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289582151|ref|YP_003480617.1| - 0.0012 19.1 1.2 0.032 14.5 1.2 2.3 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 gi|289582151|ref|YP_003480617.1| - 0.0014 18.4 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|289582151|ref|YP_003480617.1| - 0.0047 16.4 0.1 0.37 10.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein IstB_IS21 PF01695.17 gi|289582151|ref|YP_003480617.1| - 0.017 14.8 0.1 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ResIII PF04851.15 gi|289582151|ref|YP_003480617.1| - 0.034 14.1 0.0 0.082 12.9 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|289582151|ref|YP_003480617.1| - 0.052 13.3 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289582151|ref|YP_003480617.1| - 0.059 13.8 0.2 0.13 12.7 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|289582151|ref|YP_003480617.1| - 0.093 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|289582151|ref|YP_003480617.1| - 0.12 12.1 0.2 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.12 gi|289582151|ref|YP_003480617.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|289582152|ref|YP_003480618.1| - 5.9e-34 117.5 0.0 1e-33 116.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289582152|ref|YP_003480618.1| - 1.2e-18 67.4 0.0 2.4e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|289582152|ref|YP_003480618.1| - 0.00027 20.4 0.0 0.00059 19.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|289582152|ref|YP_003480618.1| - 0.00036 20.4 0.6 0.0033 17.3 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289582152|ref|YP_003480618.1| - 0.00072 19.9 0.1 0.017 15.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289582152|ref|YP_003480618.1| - 0.0064 16.9 0.5 0.025 14.9 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain DUF87 PF01935.17 gi|289582152|ref|YP_003480618.1| - 0.021 14.9 0.0 0.071 13.2 0.0 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|289582152|ref|YP_003480618.1| - 0.078 12.6 0.0 0.2 11.3 0.0 1.4 1 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|289582152|ref|YP_003480618.1| - 0.086 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.6 gi|289582152|ref|YP_003480618.1| - 0.13 10.9 0.0 0.21 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|289582152|ref|YP_003480618.1| - 0.2 12.1 0.0 0.41 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2721 PF11026.8 gi|289582153|ref|YP_003480619.1| - 0.00061 19.7 0.2 0.00061 19.7 0.2 1.6 2 1 0 2 2 2 1 Protein of unknown function (DUF2721) DUF3382 PF11862.8 gi|289582153|ref|YP_003480619.1| - 0.0013 18.9 2.7 0.0024 18.1 2.7 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3382) Phage_holin_3_6 PF07332.11 gi|289582153|ref|YP_003480619.1| - 0.0018 18.3 2.6 0.0087 16.1 0.4 2.2 2 0 0 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III OSTbeta PF15048.6 gi|289582153|ref|YP_003480619.1| - 0.051 13.7 0.2 0.093 12.9 0.0 1.5 2 0 0 2 2 2 0 Organic solute transporter subunit beta protein DUF2157 PF09925.9 gi|289582153|ref|YP_003480619.1| - 2.6 7.8 7.0 7.3 6.4 3.0 2.2 1 1 0 2 2 2 0 Predicted membrane protein (DUF2157) GtrA PF04138.14 gi|289582154|ref|YP_003480620.1| - 2.1e-25 89.3 8.5 2.4e-25 89.0 8.5 1.0 1 0 0 1 1 1 1 GtrA-like protein Ribosomal_L44 PF00935.19 gi|289582156|ref|YP_003480622.1| - 1.3e-26 92.8 2.3 1.6e-26 92.6 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|289582156|ref|YP_003480622.1| - 1.5e-05 24.2 0.6 0.019 14.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289582156|ref|YP_003480622.1| - 0.01 15.9 1.9 2.5 8.3 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|289582156|ref|YP_003480622.1| - 0.017 15.1 2.3 3.3 7.8 0.3 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|289582156|ref|YP_003480622.1| - 0.019 14.7 1.5 0.71 9.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|289582156|ref|YP_003480622.1| - 0.034 14.1 6.1 0.64 10.0 0.6 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-LITAF-like PF10601.9 gi|289582156|ref|YP_003480622.1| - 0.062 13.6 2.2 0.81 10.0 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|289582156|ref|YP_003480622.1| - 0.067 12.9 4.1 2.3 8.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|289582156|ref|YP_003480622.1| - 0.076 11.6 2.8 0.12 10.9 2.8 1.4 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) DZR PF12773.7 gi|289582156|ref|YP_003480622.1| - 0.33 11.0 4.1 1 9.4 4.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|289582156|ref|YP_003480622.1| - 0.39 10.7 2.7 15 5.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|289582156|ref|YP_003480622.1| - 0.46 10.6 7.5 0.77 9.9 7.5 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|289582156|ref|YP_003480622.1| - 0.86 9.4 7.0 0.68 9.7 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L33 PF00471.20 gi|289582156|ref|YP_003480622.1| - 4.6 7.8 7.7 2.2 8.8 2.6 2.5 3 0 0 3 3 3 0 Ribosomal protein L33 Ribosomal_S27e PF01667.17 gi|289582157|ref|YP_003480623.1| - 8.3e-22 76.7 0.6 8.8e-22 76.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|289582157|ref|YP_003480623.1| - 0.00015 21.8 1.0 0.00022 21.3 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|289582157|ref|YP_003480623.1| - 0.022 14.2 1.6 0.041 13.4 1.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|289582157|ref|YP_003480623.1| - 0.027 14.5 0.9 0.033 14.2 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|289582157|ref|YP_003480623.1| - 0.042 13.8 0.6 0.05 13.5 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|289582157|ref|YP_003480623.1| - 0.053 13.4 0.8 3.3 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO C1_1 PF00130.22 gi|289582157|ref|YP_003480623.1| - 0.063 13.2 0.5 0.095 12.6 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-5_eIF-2B PF01873.17 gi|289582157|ref|YP_003480623.1| - 0.094 12.6 1.7 0.11 12.3 1.7 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zinc_ribbon_4 PF13717.6 gi|289582157|ref|YP_003480623.1| - 0.11 12.5 3.0 6.4 6.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-LSD1 PF06943.12 gi|289582157|ref|YP_003480623.1| - 0.11 12.4 2.9 3.7 7.5 0.2 2.3 2 0 0 2 2 2 0 LSD1 zinc finger EIF_2_alpha PF07541.12 gi|289582158|ref|YP_003480624.1| - 2.5e-24 85.6 0.0 5.1e-24 84.6 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|289582158|ref|YP_003480624.1| - 3.7e-11 43.2 0.8 7.3e-11 42.3 0.8 1.5 1 0 0 1 1 1 1 S1 RNA binding domain cwf21 PF08312.12 gi|289582158|ref|YP_003480624.1| - 0.063 13.4 2.0 0.1 12.7 0.3 2.2 2 0 0 2 2 2 0 cwf21 domain Nop10p PF04135.12 gi|289582159|ref|YP_003480625.1| - 3.2e-24 84.7 2.2 3.6e-24 84.6 2.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PAC2 PF09754.9 gi|289582160|ref|YP_003480626.1| - 2.6e-51 174.7 0.1 3.1e-51 174.4 0.1 1.1 1 0 0 1 1 1 1 PAC2 family Peptidase_M48 PF01435.18 gi|289582161|ref|YP_003480627.1| - 4.6e-18 65.7 0.7 5.7e-17 62.1 0.7 2.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289582161|ref|YP_003480627.1| - 0.0012 18.1 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289582161|ref|YP_003480627.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Wzy_C PF04932.15 gi|289582161|ref|YP_003480627.1| - 0.1 12.3 0.3 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 O-Antigen ligase DUF4191 PF13829.6 gi|289582161|ref|YP_003480627.1| - 0.18 11.1 4.1 0.082 12.2 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) HTH_24 PF13412.6 gi|289582162|ref|YP_003480628.1| - 1.1e-09 37.7 0.0 1.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289582162|ref|YP_003480628.1| - 5.8e-09 35.7 0.1 1.8e-08 34.1 0.1 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|289582162|ref|YP_003480628.1| - 4.4e-07 29.7 0.0 1e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289582162|ref|YP_003480628.1| - 9.7e-06 25.5 0.0 2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|289582162|ref|YP_003480628.1| - 1.1e-05 25.8 0.0 2.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|289582162|ref|YP_003480628.1| - 0.00015 21.6 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|289582162|ref|YP_003480628.1| - 0.00023 21.1 0.0 0.00037 20.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|289582162|ref|YP_003480628.1| - 0.00028 20.6 0.0 0.00063 19.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|289582162|ref|YP_003480628.1| - 0.00044 20.1 0.0 0.0007 19.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain Mnd1 PF03962.15 gi|289582162|ref|YP_003480628.1| - 0.00047 20.4 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 Mnd1 HTH domain TrmB PF01978.19 gi|289582162|ref|YP_003480628.1| - 0.0025 17.7 0.1 0.005 16.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|289582162|ref|YP_003480628.1| - 0.0028 17.7 0.6 0.0064 16.5 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_20 PF12840.7 gi|289582162|ref|YP_003480628.1| - 0.0063 16.6 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|289582162|ref|YP_003480628.1| - 0.012 16.0 0.0 0.03 14.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HemN_C PF06969.16 gi|289582162|ref|YP_003480628.1| - 0.017 15.2 0.0 0.054 13.6 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain GntR PF00392.21 gi|289582162|ref|YP_003480628.1| - 0.02 14.6 0.1 0.053 13.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|289582162|ref|YP_003480628.1| - 0.024 14.8 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.10 gi|289582162|ref|YP_003480628.1| - 0.039 13.9 0.1 0.09 12.7 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain SMC_ScpB PF04079.16 gi|289582162|ref|YP_003480628.1| - 0.047 13.3 0.1 0.089 12.4 0.1 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_23 PF13384.6 gi|289582162|ref|YP_003480628.1| - 0.048 13.5 0.2 0.14 12.0 0.0 1.9 2 0 0 2 2 1 0 Homeodomain-like domain DUF4364 PF14277.6 gi|289582162|ref|YP_003480628.1| - 0.066 12.9 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TetR_C_7 PF14246.6 gi|289582162|ref|YP_003480628.1| - 0.072 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain DUF4423 PF14394.6 gi|289582162|ref|YP_003480628.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Adeno_E4 PF05385.11 gi|289582162|ref|YP_003480628.1| - 0.11 12.5 1.4 0.14 12.3 0.1 1.9 2 0 0 2 2 2 0 Mastadenovirus early E4 13 kDa protein Mrr_N PF14338.6 gi|289582162|ref|YP_003480628.1| - 0.18 11.9 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain FAD_binding_3 PF01494.19 gi|289582163|ref|YP_003480629.1| - 1e-09 38.1 0.2 6.6e-09 35.5 0.2 2.1 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|289582163|ref|YP_003480629.1| - 2.7e-08 33.8 0.0 0.0001 22.0 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|289582163|ref|YP_003480629.1| - 4.5e-08 32.4 0.0 0.0068 15.3 0.0 2.9 3 0 0 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|289582163|ref|YP_003480629.1| - 8.6e-08 31.6 0.0 2e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|289582163|ref|YP_003480629.1| - 2.4e-06 27.2 1.7 1.9e-05 24.2 1.7 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289582163|ref|YP_003480629.1| - 3.8e-06 26.4 0.0 6.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289582163|ref|YP_003480629.1| - 1.7e-05 24.1 0.0 3.7e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|289582163|ref|YP_003480629.1| - 0.00033 20.0 0.1 0.00078 18.7 0.0 1.6 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|289582163|ref|YP_003480629.1| - 0.00045 19.0 0.0 0.00078 18.3 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|289582163|ref|YP_003480629.1| - 0.00051 20.2 0.5 0.0015 18.7 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|289582163|ref|YP_003480629.1| - 0.0023 17.1 0.0 0.023 13.8 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|289582163|ref|YP_003480629.1| - 0.0064 15.8 0.0 0.009 15.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|289582163|ref|YP_003480629.1| - 0.09 12.7 0.0 0.19 11.6 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289582163|ref|YP_003480629.1| - 0.14 12.4 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain XdhC_C PF13478.6 gi|289582163|ref|YP_003480629.1| - 0.14 12.6 0.0 0.42 11.1 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain Pyr_redox PF00070.27 gi|289582163|ref|YP_003480629.1| - 0.16 12.6 0.0 0.3 11.7 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|289582164|ref|YP_003480630.1| - 1.2e-42 146.1 0.0 3e-42 144.8 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289582164|ref|YP_003480630.1| - 6e-39 133.5 0.0 7.4e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289582164|ref|YP_003480630.1| - 3.2e-08 33.7 0.0 4.3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289582164|ref|YP_003480630.1| - 0.0028 17.2 0.1 0.0081 15.6 0.1 1.8 2 1 1 3 3 3 1 NAD dependent epimerase/dehydratase family E1-N PF14463.6 gi|289582164|ref|YP_003480630.1| - 0.14 12.0 2.1 0.24 11.2 2.0 1.5 1 1 0 1 1 1 0 E1 N-terminal domain OrfB_IS605 PF01385.19 gi|289582165|ref|YP_003480631.1| - 1.4e-21 76.9 2.3 2.1e-21 76.4 0.2 2.0 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289582165|ref|YP_003480631.1| - 2.4e-18 65.8 0.0 5.6e-18 64.6 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF3445 PF11927.8 gi|289582165|ref|YP_003480631.1| - 0.042 13.5 0.1 0.074 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) HTH_OrfB_IS605 PF12323.8 gi|289582165|ref|YP_003480631.1| - 0.063 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rubredoxin_2 PF18073.1 gi|289582165|ref|YP_003480631.1| - 0.26 11.1 1.4 0.8 9.5 1.4 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF3958 PF13125.6 gi|289582165|ref|YP_003480631.1| - 2.6 8.3 9.4 1.5 9.1 5.9 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3958) Usp PF00582.26 gi|289582166|ref|YP_003480632.1| - 3.4e-18 66.5 0.6 5.3e-18 65.9 0.6 1.3 1 1 0 1 1 1 1 Universal stress protein family ROK PF00480.20 gi|289582167|ref|YP_003480633.1| - 3.9e-43 148.0 0.1 4.6e-43 147.8 0.1 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|289582167|ref|YP_003480633.1| - 0.0059 16.1 0.5 0.022 14.2 0.2 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Glucokinase PF02685.16 gi|289582167|ref|YP_003480633.1| - 0.029 13.4 0.0 0.43 9.5 0.0 2.3 1 1 0 1 1 1 0 Glucokinase FGGY_N PF00370.21 gi|289582167|ref|YP_003480633.1| - 0.23 11.0 0.1 0.5 9.9 0.1 1.6 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain LVIVD PF08309.11 gi|289582168|ref|YP_003480634.1| - 7.5e-13 47.6 2.6 0.0027 17.0 0.1 6.4 7 0 0 7 7 7 4 LVIVD repeat Beta_propel PF09826.9 gi|289582168|ref|YP_003480634.1| - 1.4e-06 27.5 0.0 0.027 13.3 0.0 3.6 4 1 0 4 4 4 2 Beta propeller domain SBP56 PF05694.11 gi|289582168|ref|YP_003480634.1| - 0.17 10.6 0.7 17 4.1 0.0 3.4 2 2 1 4 4 4 0 56kDa selenium binding protein (SBP56) NifU PF01106.17 gi|289582169|ref|YP_003480635.1| - 1.3e-08 34.9 0.4 2.4e-08 34.0 0.3 1.5 1 1 1 2 2 2 1 NifU-like domain ACT PF01842.25 gi|289582170|ref|YP_003480636.1| - 2.1e-05 24.2 0.4 0.0016 18.1 0.0 2.9 2 1 1 3 3 3 2 ACT domain Homoserine_dh PF00742.19 gi|289582171|ref|YP_003480637.1| - 1.4e-48 165.1 0.1 2.2e-48 164.4 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|289582171|ref|YP_003480637.1| - 1e-07 31.9 0.1 1.9e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|289582171|ref|YP_003480637.1| - 2.5e-05 24.9 0.0 7.9e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289582171|ref|YP_003480637.1| - 0.002 17.5 0.0 0.0032 16.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|289582171|ref|YP_003480637.1| - 0.0032 18.0 0.0 0.038 14.6 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent PglD_N PF17836.1 gi|289582171|ref|YP_003480637.1| - 0.0033 18.0 0.1 0.007 17.0 0.1 1.5 1 0 0 1 1 1 1 PglD N-terminal domain XdhC_C PF13478.6 gi|289582171|ref|YP_003480637.1| - 0.022 15.3 0.2 0.05 14.1 0.2 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|289582171|ref|YP_003480637.1| - 0.031 14.5 0.1 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|289582171|ref|YP_003480637.1| - 0.043 13.7 0.1 0.065 13.1 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GTP_EFTU PF00009.27 gi|289582172|ref|YP_003480638.1| - 3.2e-56 190.0 0.2 4.5e-56 189.5 0.2 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|289582172|ref|YP_003480638.1| - 1.2e-36 125.4 0.0 3e-36 124.1 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|289582172|ref|YP_003480638.1| - 2.2e-14 53.6 4.1 4.1e-14 52.7 1.2 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|289582172|ref|YP_003480638.1| - 6.3e-07 29.5 0.1 4.1e-06 26.8 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|289582172|ref|YP_003480638.1| - 0.0039 16.6 0.1 0.065 12.6 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|289582172|ref|YP_003480638.1| - 0.0045 17.1 0.1 3 7.9 0.0 2.4 1 1 1 2 2 2 2 Dynamin family FeoB_N PF02421.18 gi|289582172|ref|YP_003480638.1| - 0.0095 15.5 0.1 0.23 11.0 0.2 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|289582172|ref|YP_003480638.1| - 0.012 15.5 1.0 0.71 9.7 0.1 2.4 1 1 1 2 2 2 0 RsgA GTPase SRPRB PF09439.10 gi|289582172|ref|YP_003480638.1| - 0.04 13.4 0.0 0.85 9.0 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.6 gi|289582172|ref|YP_003480638.1| - 0.042 13.8 0.7 0.13 12.1 0.7 1.9 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Septin PF00735.18 gi|289582172|ref|YP_003480638.1| - 0.082 12.2 0.0 0.18 11.0 0.0 1.5 1 1 0 1 1 1 0 Septin Ribosomal_S10 PF00338.22 gi|289582173|ref|YP_003480639.1| - 1.3e-25 89.4 0.0 1.5e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Rhomboid PF01694.22 gi|289582174|ref|YP_003480640.1| - 1.2e-23 83.8 15.9 1.2e-23 83.8 15.9 2.0 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|289582174|ref|YP_003480640.1| - 6.6e-05 23.4 0.6 6.6e-05 23.4 0.6 2.6 1 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DUF997 PF06196.12 gi|289582174|ref|YP_003480640.1| - 0.9 9.6 5.6 0.11 12.5 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF997) CBS PF00571.28 gi|289582176|ref|YP_003480642.1| - 6.1e-29 100.2 3.4 2.5e-16 59.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain TPP_enzyme_N PF02776.18 gi|289582177|ref|YP_003480643.1| - 3.1e-38 131.1 0.3 3.1e-36 124.6 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289582177|ref|YP_003480643.1| - 3e-37 127.7 0.0 7.5e-37 126.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|289582177|ref|YP_003480643.1| - 4.3e-32 110.7 0.3 8.5e-32 109.8 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain MFS_1 PF07690.16 gi|289582178|ref|YP_003480644.1| - 1.4e-30 106.4 46.5 4.4e-21 75.2 18.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Aminotran_3 PF00202.21 gi|289582179|ref|YP_003480645.1| - 1.8e-84 283.8 0.0 2.2e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|289582179|ref|YP_003480645.1| - 2.2e-06 27.2 0.0 3.5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase NUDIX PF00293.28 gi|289582180|ref|YP_003480646.1| - 8.5e-17 61.4 1.5 8.5e-17 61.4 1.5 1.4 2 0 0 2 2 2 1 NUDIX domain DUF4129 PF13559.6 gi|289582180|ref|YP_003480646.1| - 0.079 13.2 0.4 0.19 12.0 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) Patatin PF01734.22 gi|289582181|ref|YP_003480647.1| - 0.045 13.9 0.0 0.055 13.6 0.0 1.2 1 0 0 1 1 1 0 Patatin-like phospholipase ADH_zinc_N PF00107.26 gi|289582183|ref|YP_003480649.1| - 5.5e-32 110.5 0.0 9.2e-32 109.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|289582183|ref|YP_003480649.1| - 2.7e-23 83.5 0.1 6.2e-23 82.3 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|289582183|ref|YP_003480649.1| - 2.6e-09 36.9 0.1 4.2e-08 33.1 0.1 2.3 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|289582183|ref|YP_003480649.1| - 0.016 14.7 0.1 0.024 14.1 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase tRNA-synt_2b PF00587.25 gi|289582184|ref|YP_003480650.1| - 5.8e-23 81.8 0.0 8.9e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|289582184|ref|YP_003480650.1| - 7.8e-19 67.7 0.2 2e-18 66.4 0.2 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 gi|289582184|ref|YP_003480650.1| - 1.8e-17 63.3 0.1 3.5e-17 62.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain GATase_2 PF00310.21 gi|289582185|ref|YP_003480651.1| - 1.9e-160 534.2 0.0 2.6e-160 533.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|289582185|ref|YP_003480651.1| - 2.9e-151 503.8 0.4 6.2e-149 496.1 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|289582185|ref|YP_003480651.1| - 1.7e-112 375.5 0.0 6.6e-112 373.5 0.0 1.9 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|289582185|ref|YP_003480651.1| - 3.1e-78 261.7 6.2 5.1e-78 261.0 6.2 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|289582185|ref|YP_003480651.1| - 0.00068 19.1 1.1 0.0012 18.3 1.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|289582185|ref|YP_003480651.1| - 0.15 11.0 12.3 0.0091 15.1 3.0 3.1 3 1 0 3 3 3 0 FMN-dependent dehydrogenase HTH_AsnC-type PF13404.6 gi|289582186|ref|YP_003480652.1| - 1.9e-14 53.2 0.7 4.8e-14 51.9 0.7 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|289582186|ref|YP_003480652.1| - 5.4e-13 48.3 0.1 1.1e-12 47.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|289582186|ref|YP_003480652.1| - 3e-07 30.3 0.1 9.8e-07 28.6 0.0 1.9 3 0 0 3 3 2 1 HTH domain HTH_23 PF13384.6 gi|289582186|ref|YP_003480652.1| - 8.8e-07 28.6 0.0 2.3e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|289582186|ref|YP_003480652.1| - 2.3e-06 27.6 0.0 6.4e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|289582186|ref|YP_003480652.1| - 2.5e-06 27.5 0.5 4.6e-06 26.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289582186|ref|YP_003480652.1| - 7.3e-05 22.5 0.1 0.001 18.8 0.0 2.3 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289582186|ref|YP_003480652.1| - 0.00025 21.0 0.0 0.00065 19.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|289582186|ref|YP_003480652.1| - 0.00057 19.4 0.2 0.0013 18.2 0.1 1.6 2 0 0 2 2 1 1 CodY helix-turn-helix domain HTH_DeoR PF08220.12 gi|289582186|ref|YP_003480652.1| - 0.0006 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|289582186|ref|YP_003480652.1| - 0.00083 19.2 0.1 0.0028 17.5 0.0 1.8 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|289582186|ref|YP_003480652.1| - 0.0013 18.4 0.1 0.003 17.2 0.0 1.6 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|289582186|ref|YP_003480652.1| - 0.0016 18.2 0.2 0.0038 17.0 0.2 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|289582186|ref|YP_003480652.1| - 0.0016 17.8 1.6 0.0045 16.4 0.2 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 gi|289582186|ref|YP_003480652.1| - 0.0026 17.7 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289582186|ref|YP_003480652.1| - 0.0045 16.8 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|289582186|ref|YP_003480652.1| - 0.0072 16.7 0.2 0.038 14.3 0.0 2.2 2 2 0 2 2 2 1 Transcriptional regulator HTH_38 PF13936.6 gi|289582186|ref|YP_003480652.1| - 0.014 15.2 0.2 0.045 13.5 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain FaeA PF04703.12 gi|289582186|ref|YP_003480652.1| - 0.017 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HrcA_DNA-bdg PF03444.15 gi|289582186|ref|YP_003480652.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4 PF04545.16 gi|289582186|ref|YP_003480652.1| - 0.027 14.0 0.0 0.066 12.7 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|289582186|ref|YP_003480652.1| - 0.028 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.12 gi|289582186|ref|YP_003480652.1| - 0.029 14.2 0.1 0.097 12.5 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_27 PF13463.6 gi|289582186|ref|YP_003480652.1| - 0.061 13.8 0.3 0.2 12.2 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.22 gi|289582186|ref|YP_003480652.1| - 0.067 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 MarR family Put_DNA-bind_N PF06971.13 gi|289582186|ref|YP_003480652.1| - 0.068 13.2 0.0 0.67 10.0 0.0 2.3 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus GntR PF00392.21 gi|289582186|ref|YP_003480652.1| - 0.073 12.7 0.1 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.9 gi|289582186|ref|YP_003480652.1| - 0.13 12.3 0.0 0.85 9.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.19 gi|289582186|ref|YP_003480652.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HalOD1 PF18545.1 gi|289582187|ref|YP_003480653.1| - 2.4e-23 82.2 2.3 3e-23 81.9 2.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 CMD PF02627.20 gi|289582188|ref|YP_003480654.1| - 9.4e-11 41.6 0.4 1.7e-08 34.4 0.1 2.9 2 1 1 3 3 3 2 Carboxymuconolactone decarboxylase family Epimerase PF01370.21 gi|289582190|ref|YP_003480656.1| - 2.3e-32 112.4 0.1 1.6e-30 106.4 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|289582190|ref|YP_003480656.1| - 3.2e-09 36.9 0.0 5.8e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|289582190|ref|YP_003480656.1| - 9.5e-08 31.4 0.0 1.2e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289582190|ref|YP_003480656.1| - 9.9e-08 31.7 0.2 0.004 16.6 0.0 2.4 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|289582190|ref|YP_003480656.1| - 9.9e-07 28.2 0.0 0.0091 15.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|289582190|ref|YP_003480656.1| - 8.7e-06 25.0 0.0 6.5e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|289582190|ref|YP_003480656.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family TrkA_N PF02254.18 gi|289582190|ref|YP_003480656.1| - 0.022 15.0 0.0 0.046 14.0 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain adh_short PF00106.25 gi|289582190|ref|YP_003480656.1| - 0.059 12.8 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Fe-ADH_2 PF13685.6 gi|289582191|ref|YP_003480657.1| - 1.4e-60 205.1 3.5 1.7e-60 204.8 3.5 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|289582191|ref|YP_003480657.1| - 9.2e-19 67.5 7.7 3e-18 65.8 7.7 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|289582191|ref|YP_003480657.1| - 5.9e-09 35.5 0.2 1.5e-08 34.2 0.2 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase LPG_synthase_TM PF03706.13 gi|289582193|ref|YP_003480659.1| - 3.8e-37 128.4 39.6 4.7e-37 128.1 39.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Orthoreo_P10 PF07204.11 gi|289582193|ref|YP_003480659.1| - 0.66 10.0 4.0 0.83 9.7 0.2 2.7 3 0 0 3 3 3 0 Orthoreovirus membrane fusion protein p10 Peptidase_S9 PF00326.21 gi|289582194|ref|YP_003480660.1| - 4.9e-44 150.3 0.0 7.8e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|289582194|ref|YP_003480660.1| - 5.4e-12 45.7 0.0 1.8e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|289582194|ref|YP_003480660.1| - 2.3e-09 37.2 0.0 5.2e-06 26.3 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|289582194|ref|YP_003480660.1| - 3.7e-09 36.6 0.0 0.0013 18.5 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289582194|ref|YP_003480660.1| - 6.5e-08 32.1 0.1 0.0038 16.5 0.0 2.4 2 1 0 2 2 2 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|289582194|ref|YP_003480660.1| - 1.8e-06 27.7 5.2 0.00047 20.0 0.1 5.0 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|289582194|ref|YP_003480660.1| - 2.1e-06 26.8 0.0 3.9e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.12 gi|289582194|ref|YP_003480660.1| - 0.00013 20.8 0.0 0.0028 16.4 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|289582194|ref|YP_003480660.1| - 0.0016 18.4 0.0 0.061 13.2 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|289582194|ref|YP_003480660.1| - 0.0056 16.6 0.0 0.33 10.8 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.21 gi|289582194|ref|YP_003480660.1| - 0.0057 15.4 0.0 0.64 8.7 0.0 3.1 1 1 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_2 PF02230.16 gi|289582194|ref|YP_003480660.1| - 0.0099 15.7 0.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|289582194|ref|YP_003480660.1| - 0.039 14.1 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein PQQ PF01011.21 gi|289582194|ref|YP_003480660.1| - 0.13 12.2 0.7 9.9 6.3 0.0 3.8 3 1 1 4 4 4 0 PQQ enzyme repeat DUF829 PF05705.14 gi|289582194|ref|YP_003480660.1| - 0.17 11.7 0.0 0.45 10.4 0.0 1.5 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) Shisa PF13908.6 gi|289582195|ref|YP_003480661.1| - 0.098 12.9 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Trypan_PARP PF05887.11 gi|289582195|ref|YP_003480661.1| - 6.6 6.7 22.9 2.1 8.3 18.9 2.1 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) Glyco_transf_4 PF13439.6 gi|289582197|ref|YP_003480663.1| - 1.1e-14 54.8 3.2 1.3e-14 54.6 0.8 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|289582197|ref|YP_003480663.1| - 3e-12 47.3 6.4 3e-12 47.3 6.4 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|289582197|ref|YP_003480663.1| - 4.5e-12 45.8 0.0 6.1e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289582197|ref|YP_003480663.1| - 5.2e-10 39.9 0.0 8.2e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|289582197|ref|YP_003480663.1| - 2e-05 24.6 0.0 3.4e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like HIT PF01230.23 gi|289582198|ref|YP_003480664.1| - 5.7e-16 59.1 0.0 7.5e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|289582198|ref|YP_003480664.1| - 2.4e-08 34.5 0.0 3.1e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Methyltransf_25 PF13649.6 gi|289582199|ref|YP_003480665.1| - 2.3e-20 73.1 0.0 5e-20 72.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582199|ref|YP_003480665.1| - 5.5e-20 71.8 0.0 8.7e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582199|ref|YP_003480665.1| - 2e-14 53.8 0.0 2.4e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582199|ref|YP_003480665.1| - 2.3e-13 50.2 0.0 2.8e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582199|ref|YP_003480665.1| - 1.6e-09 38.4 0.0 2.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|289582199|ref|YP_003480665.1| - 1.2e-07 31.8 0.0 2e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|289582199|ref|YP_003480665.1| - 5.7e-06 25.8 0.0 8.4e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|289582199|ref|YP_003480665.1| - 2.6e-05 24.0 0.0 0.00035 20.3 0.0 2.0 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 gi|289582199|ref|YP_003480665.1| - 0.00038 19.9 0.0 0.00078 18.8 0.0 1.5 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|289582199|ref|YP_003480665.1| - 0.00045 19.8 0.0 0.00078 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|289582199|ref|YP_003480665.1| - 0.00082 19.0 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|289582199|ref|YP_003480665.1| - 0.0077 16.0 0.0 0.015 15.0 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|289582199|ref|YP_003480665.1| - 0.0091 15.0 0.0 0.015 14.2 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.18 gi|289582199|ref|YP_003480665.1| - 0.012 15.2 0.0 0.33 10.4 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_18 PF12847.7 gi|289582199|ref|YP_003480665.1| - 0.047 13.6 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain DUF3261 PF11659.8 gi|289582199|ref|YP_003480665.1| - 0.1 12.5 0.1 0.18 11.6 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3261) PALP PF00291.25 gi|289582200|ref|YP_003480666.1| - 1e-44 153.1 1.3 1.2e-44 152.9 1.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.27 gi|289582202|ref|YP_003480668.1| - 4.1e-29 101.8 0.0 7.8e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582202|ref|YP_003480668.1| - 9e-09 35.6 0.0 0.00015 21.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289582202|ref|YP_003480668.1| - 5.1e-07 29.4 0.8 0.02 14.4 0.1 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289582202|ref|YP_003480668.1| - 5.3e-07 30.0 0.0 1.1e-05 25.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|289582202|ref|YP_003480668.1| - 1.2e-06 28.6 0.0 5.2e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|289582202|ref|YP_003480668.1| - 7.5e-05 23.3 0.1 0.00019 22.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain Rad17 PF03215.15 gi|289582202|ref|YP_003480668.1| - 0.00011 22.1 0.0 0.00018 21.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|289582202|ref|YP_003480668.1| - 0.00012 21.8 0.0 0.00024 20.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|289582202|ref|YP_003480668.1| - 0.00015 22.3 0.0 0.0004 20.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|289582202|ref|YP_003480668.1| - 0.00038 20.3 0.0 0.00062 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|289582202|ref|YP_003480668.1| - 0.00043 19.8 0.0 0.54 9.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial TniB protein AAA_28 PF13521.6 gi|289582202|ref|YP_003480668.1| - 0.0015 18.8 0.1 0.0073 16.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|289582202|ref|YP_003480668.1| - 0.0019 18.0 0.0 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289582202|ref|YP_003480668.1| - 0.0021 18.5 0.1 0.0039 17.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|289582202|ref|YP_003480668.1| - 0.014 15.8 0.0 0.88 10.0 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|289582202|ref|YP_003480668.1| - 0.018 14.3 0.0 0.048 12.8 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|289582202|ref|YP_003480668.1| - 0.026 14.6 0.0 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|289582202|ref|YP_003480668.1| - 0.037 14.0 0.1 0.34 10.9 0.0 2.3 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|289582202|ref|YP_003480668.1| - 0.039 13.7 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|289582202|ref|YP_003480668.1| - 0.04 12.7 0.0 0.089 11.6 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|289582202|ref|YP_003480668.1| - 0.043 13.7 0.1 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|289582202|ref|YP_003480668.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|289582202|ref|YP_003480668.1| - 0.075 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|289582202|ref|YP_003480668.1| - 0.076 13.4 0.1 0.18 12.2 0.1 1.8 1 1 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|289582202|ref|YP_003480668.1| - 0.078 12.9 0.0 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|289582202|ref|YP_003480668.1| - 0.085 12.9 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase G-alpha PF00503.20 gi|289582202|ref|YP_003480668.1| - 0.13 11.4 0.0 0.26 10.4 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.9 gi|289582202|ref|YP_003480668.1| - 0.19 10.5 1.1 1.4 7.7 0.0 2.5 2 1 1 3 3 3 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|289582203|ref|YP_003480669.1| - 4.3e-16 59.2 15.6 4.3e-16 59.2 15.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component RNase_II_C_S1 PF18614.1 gi|289582203|ref|YP_003480669.1| - 0.017 15.1 0.2 0.055 13.4 0.2 1.9 1 0 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain FtsX PF02687.21 gi|289582203|ref|YP_003480669.1| - 6.9 7.2 20.0 6.6 7.3 1.2 3.3 3 1 0 3 3 3 0 FtsX-like permease family UPF0259 PF06790.11 gi|289582203|ref|YP_003480669.1| - 7.8 6.2 11.4 4.6e+02 0.4 11.6 2.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0259) BPD_transp_1 PF00528.22 gi|289582204|ref|YP_003480670.1| - 3.5e-20 72.5 16.2 3.5e-20 72.5 16.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4112 PF13430.6 gi|289582204|ref|YP_003480670.1| - 3.1 8.1 7.3 1.3 9.3 2.1 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4112) PBP_like_2 PF12849.7 gi|289582205|ref|YP_003480671.1| - 4.1e-25 89.0 0.1 6.1e-25 88.4 0.1 1.3 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|289582205|ref|YP_003480671.1| - 7.2e-06 25.9 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|289582205|ref|YP_003480671.1| - 8.1e-06 25.1 0.1 1.3e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain EF-hand_5 PF13202.6 gi|289582205|ref|YP_003480671.1| - 0.34 10.5 0.0 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 EF hand Cons_hypoth698 PF03601.14 gi|289582206|ref|YP_003480672.1| - 1.7e-58 197.9 19.2 2.3e-58 197.5 19.2 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 DUF5441 PF17513.2 gi|289582206|ref|YP_003480672.1| - 0.029 14.1 1.9 0.16 11.7 1.3 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5441) Abhydrolase_1 PF00561.20 gi|289582206|ref|YP_003480672.1| - 0.043 13.5 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF1146 PF06612.11 gi|289582206|ref|YP_003480672.1| - 3.3 7.8 8.8 8.4 6.5 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1146) TAT_ubiq PF07706.12 gi|289582207|ref|YP_003480673.1| - 0.037 14.2 0.1 3.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Aminotransferase ubiquitination site Gemini_mov PF01708.16 gi|289582207|ref|YP_003480673.1| - 0.059 13.1 0.9 0.059 13.1 0.9 1.1 1 0 0 1 1 1 0 Geminivirus putative movement protein Pterin_bind PF00809.22 gi|289582210|ref|YP_003480676.1| - 3.8e-78 262.5 2.7 5.6e-78 262.0 2.7 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|289582210|ref|YP_003480676.1| - 8.7e-11 42.2 0.0 1.7e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|289582210|ref|YP_003480676.1| - 3.5e-09 36.8 0.0 1.4e-08 34.9 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain CAT_RBD PF03123.15 gi|289582210|ref|YP_003480676.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 CAT RNA binding domain ABC_tran PF00005.27 gi|289582212|ref|YP_003480678.1| - 1.5e-29 103.2 0.0 2.3e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582212|ref|YP_003480678.1| - 5.5e-13 49.4 0.2 6.8e-09 35.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|289582212|ref|YP_003480678.1| - 0.0008 19.2 0.0 1.2 8.8 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|289582212|ref|YP_003480678.1| - 0.0029 18.1 0.4 0.0055 17.2 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289582212|ref|YP_003480678.1| - 0.037 14.4 0.1 0.071 13.5 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|289582212|ref|YP_003480678.1| - 0.064 13.5 0.6 0.21 11.8 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|289582212|ref|YP_003480678.1| - 0.069 12.9 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289582212|ref|YP_003480678.1| - 0.071 12.9 0.3 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|289582212|ref|YP_003480678.1| - 0.18 10.4 0.1 0.83 8.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain DUF2938 PF11158.8 gi|289582214|ref|YP_003480680.1| - 0.0011 18.5 0.9 0.0012 18.3 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2938) DUF3483 PF11982.8 gi|289582214|ref|YP_003480680.1| - 0.035 13.8 0.1 0.037 13.7 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) DUF4129 PF13559.6 gi|289582215|ref|YP_003480681.1| - 0.00024 21.3 1.1 0.00024 21.3 1.1 1.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) CPSase_L_D2 PF02786.17 gi|289582218|ref|YP_003480684.1| - 1.2e-97 325.5 0.1 1.5e-57 194.5 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|289582218|ref|YP_003480684.1| - 6.4e-24 84.6 0.0 2.2e-23 82.9 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|289582218|ref|YP_003480684.1| - 3.7e-15 55.8 0.0 6e-08 32.5 0.1 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|289582218|ref|YP_003480684.1| - 1.4e-12 47.5 0.1 6e-08 32.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|289582218|ref|YP_003480684.1| - 3.1e-12 46.5 0.1 1.2e-08 34.7 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|289582218|ref|YP_003480684.1| - 5.1e-11 42.9 0.1 1.7e-05 25.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain DoxX PF07681.12 gi|289582219|ref|YP_003480685.1| - 1.9e-10 41.1 10.5 3e-10 40.6 10.5 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.11 gi|289582219|ref|YP_003480685.1| - 0.0047 17.1 3.1 0.0053 17.0 1.0 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing Rab5ip PF07019.12 gi|289582219|ref|YP_003480685.1| - 0.11 13.1 3.1 0.093 13.3 0.9 2.0 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) ABC2_membrane_2 PF12679.7 gi|289582221|ref|YP_003480687.1| - 3.1e-36 125.1 19.0 1.3e-35 123.1 19.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289582221|ref|YP_003480687.1| - 6.5e-07 28.8 15.5 9e-07 28.3 15.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289582221|ref|YP_003480687.1| - 5.9e-05 23.1 9.8 0.00011 22.2 9.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289582221|ref|YP_003480687.1| - 0.0026 17.3 8.2 0.0026 17.3 8.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein OST3_OST6 PF04756.13 gi|289582221|ref|YP_003480687.1| - 0.068 12.5 0.0 0.068 12.5 0.0 1.9 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family DUF2208 PF09973.9 gi|289582221|ref|YP_003480687.1| - 0.81 9.3 2.7 1.9 8.1 2.7 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) ABC_tran PF00005.27 gi|289582222|ref|YP_003480688.1| - 9.1e-27 94.2 0.0 1.4e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582222|ref|YP_003480688.1| - 1.4e-12 48.1 0.0 6e-07 29.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289582222|ref|YP_003480688.1| - 4.8e-06 27.2 0.0 1.5e-05 25.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|289582222|ref|YP_003480688.1| - 0.0031 17.2 0.1 0.0062 16.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|289582222|ref|YP_003480688.1| - 0.0033 17.2 0.0 0.0066 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289582222|ref|YP_003480688.1| - 0.0056 16.1 0.0 2.3 7.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289582222|ref|YP_003480688.1| - 0.0085 16.6 0.1 0.015 15.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain PQQ_2 PF13360.6 gi|289582222|ref|YP_003480688.1| - 0.05 13.2 0.8 2.3 7.7 0.1 2.7 1 1 1 2 2 2 0 PQQ-like domain AAA_27 PF13514.6 gi|289582222|ref|YP_003480688.1| - 0.084 12.5 0.0 0.82 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|289582222|ref|YP_003480688.1| - 0.22 11.2 0.0 1.6 8.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain HTH_20 PF12840.7 gi|289582223|ref|YP_003480689.1| - 0.0016 18.5 0.0 0.0049 16.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Exosortase_EpsH PF09721.10 gi|289582225|ref|YP_003480691.1| - 6.3e-12 45.6 21.7 1.8e-11 44.1 21.7 1.8 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Metallophos PF00149.28 gi|289582226|ref|YP_003480692.1| - 1.1e-07 32.5 0.2 3.4e-06 27.7 0.0 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|289582226|ref|YP_003480692.1| - 2.9e-06 27.6 0.1 4.5e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CPBP PF02517.16 gi|289582227|ref|YP_003480693.1| - 5.1e-17 62.0 9.8 5.1e-17 62.0 9.8 2.2 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease TMEM43 PF07787.12 gi|289582227|ref|YP_003480693.1| - 0.33 10.3 3.5 0.26 10.7 0.3 2.1 2 0 0 2 2 2 0 Transmembrane protein 43 HTH_20 PF12840.7 gi|289582228|ref|YP_003480694.1| - 4.1e-06 26.8 0.7 1.3e-05 25.1 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain DUF35_N PF12172.8 gi|289582228|ref|YP_003480694.1| - 0.67 9.9 7.5 5.6 6.9 0.3 3.6 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Di19 PF05605.12 gi|289582228|ref|YP_003480694.1| - 1.1 9.6 6.6 4.8 7.6 0.2 2.6 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Amino_oxidase PF01593.24 gi|289582229|ref|YP_003480695.1| - 2.2e-48 165.7 2.2 4.8e-48 164.6 2.2 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|289582229|ref|YP_003480695.1| - 1.5e-15 57.2 0.7 3.8e-15 55.9 0.7 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|289582229|ref|YP_003480695.1| - 8.8e-09 35.4 15.2 1.3e-07 31.5 15.2 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|289582229|ref|YP_003480695.1| - 2.6e-07 30.2 3.1 6.7e-05 22.3 2.8 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|289582229|ref|YP_003480695.1| - 1.7e-05 25.3 1.0 0.0026 18.3 1.4 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|289582229|ref|YP_003480695.1| - 0.0002 20.7 4.4 0.00037 19.8 1.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289582229|ref|YP_003480695.1| - 0.00028 19.7 0.4 0.0011 17.7 0.4 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|289582229|ref|YP_003480695.1| - 0.00039 19.6 3.9 0.00078 18.6 3.9 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|289582229|ref|YP_003480695.1| - 0.0015 18.0 6.2 0.0015 18.0 6.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|289582229|ref|YP_003480695.1| - 0.0036 16.4 1.8 0.0051 15.9 1.8 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|289582229|ref|YP_003480695.1| - 0.0072 15.6 0.6 0.012 14.8 0.6 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|289582229|ref|YP_003480695.1| - 0.0083 15.4 1.4 0.0083 15.4 0.2 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|289582229|ref|YP_003480695.1| - 0.16 11.0 0.8 0.27 10.2 0.8 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|289582229|ref|YP_003480695.1| - 0.49 9.2 1.3 0.85 8.4 1.3 1.4 1 0 0 1 1 1 0 Tryptophan halogenase DUF3119 PF11317.8 gi|289582230|ref|YP_003480696.1| - 0.39 11.0 1.5 0.42 10.9 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3119) DUF1382 PF07131.11 gi|289582230|ref|YP_003480696.1| - 0.39 10.7 1.1 0.46 10.5 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) DUF202 PF02656.15 gi|289582230|ref|YP_003480696.1| - 2 8.9 5.2 2.4 8.6 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Copper-bind PF00127.20 gi|289582231|ref|YP_003480697.1| - 1.5e-13 51.1 0.0 3.2e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|289582231|ref|YP_003480697.1| - 3.4e-05 23.9 0.2 0.0054 16.8 0.2 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain 4HBT PF03061.22 gi|289582232|ref|YP_003480698.1| - 5e-14 52.4 0.8 3.3e-13 49.8 0.1 2.1 2 0 0 2 2 2 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|289582232|ref|YP_003480698.1| - 1.7e-07 31.8 0.0 2.3e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Lactamase_B PF00753.27 gi|289582233|ref|YP_003480699.1| - 1.9e-25 90.1 8.0 1.9e-25 90.1 8.0 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289582233|ref|YP_003480699.1| - 0.00059 19.4 1.1 0.00059 19.4 1.1 2.8 2 1 1 3 3 3 1 Beta-lactamase superfamily domain RbsD_FucU PF05025.13 gi|289582233|ref|YP_003480699.1| - 0.049 14.1 0.1 0.14 12.5 0.1 1.8 2 0 0 2 2 2 0 RbsD / FucU transport protein family GatB_N PF02934.15 gi|289582234|ref|YP_003480700.1| - 1.5e-97 326.2 0.0 2.2e-97 325.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|289582234|ref|YP_003480700.1| - 1.4e-39 135.3 0.1 4.1e-39 133.8 0.0 1.7 2 0 0 2 2 2 1 GatB domain SHOCT PF09851.9 gi|289582235|ref|YP_003480701.1| - 2.4e-05 23.9 0.1 4.9e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|289582235|ref|YP_003480701.1| - 0.001 19.1 1.4 0.0033 17.4 0.6 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) OAD_gamma PF04277.13 gi|289582235|ref|YP_003480701.1| - 1.6 9.4 6.4 57 4.4 5.6 2.4 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Bac_rhodopsin PF01036.18 gi|289582237|ref|YP_003480703.1| - 1.2e-48 165.7 27.4 1.4e-48 165.4 27.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein AMP-binding PF00501.28 gi|289582238|ref|YP_003480704.1| - 1.3e-72 244.7 0.0 1.8e-72 244.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289582238|ref|YP_003480704.1| - 4.6e-21 75.6 0.0 9.1e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|289582238|ref|YP_003480704.1| - 1.2e-09 37.9 0.1 1.2e-09 37.9 0.1 3.5 3 1 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus adh_short PF00106.25 gi|289582239|ref|YP_003480705.1| - 5.2e-32 110.9 0.2 6.5e-32 110.6 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289582239|ref|YP_003480705.1| - 3.9e-31 108.4 0.4 6.1e-31 107.8 0.4 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.18 gi|289582239|ref|YP_003480705.1| - 0.011 15.7 0.8 0.018 14.9 0.8 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|289582239|ref|YP_003480705.1| - 0.015 14.4 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein OCC1 PF15506.6 gi|289582239|ref|YP_003480705.1| - 0.023 14.8 0.1 0.061 13.4 0.1 1.7 1 0 0 1 1 1 0 OCC1 family Methyltransf_25 PF13649.6 gi|289582239|ref|YP_003480705.1| - 0.034 14.8 0.1 0.083 13.6 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.21 gi|289582239|ref|YP_003480705.1| - 0.043 13.3 0.1 0.055 12.9 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family HTH_10 PF04967.12 gi|289582240|ref|YP_003480706.1| - 1e-17 63.6 0.1 1.7e-17 63.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|289582240|ref|YP_003480706.1| - 0.0024 17.7 0.0 0.014 15.3 0.0 2.2 2 1 0 2 2 2 1 MarR family BAT PF15915.5 gi|289582240|ref|YP_003480706.1| - 0.0067 16.3 0.1 0.012 15.5 0.1 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_5 PF01022.20 gi|289582240|ref|YP_003480706.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|289582240|ref|YP_003480706.1| - 0.014 14.9 0.4 0.044 13.3 0.1 2.0 2 1 0 2 2 2 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|289582240|ref|YP_003480706.1| - 0.022 15.0 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.6 gi|289582240|ref|YP_003480706.1| - 0.03 13.9 0.0 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|289582240|ref|YP_003480706.1| - 0.035 13.9 0.2 0.16 11.8 0.0 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain Phage_CI_repr PF07022.13 gi|289582240|ref|YP_003480706.1| - 0.082 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Tropomyosin PF00261.20 gi|289582241|ref|YP_003480707.1| - 0.00016 21.2 1.0 0.00016 21.2 1.0 1.9 2 0 0 2 2 2 1 Tropomyosin SlyX PF04102.12 gi|289582241|ref|YP_003480707.1| - 0.0006 20.4 6.0 0.001 19.6 6.0 1.7 1 1 0 1 1 1 1 SlyX IFT57 PF10498.9 gi|289582241|ref|YP_003480707.1| - 0.018 14.0 0.5 0.02 13.9 0.5 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4407 PF14362.6 gi|289582241|ref|YP_003480707.1| - 0.02 14.3 4.9 0.022 14.2 4.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Herpes_UL6 PF01763.16 gi|289582241|ref|YP_003480707.1| - 0.029 12.9 0.3 0.029 12.9 0.3 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Striatin PF08232.12 gi|289582241|ref|YP_003480707.1| - 0.041 14.5 1.9 0.05 14.2 1.9 1.1 1 0 0 1 1 1 0 Striatin family Lebercilin PF15619.6 gi|289582241|ref|YP_003480707.1| - 0.045 13.4 1.0 0.055 13.1 1.0 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease SKA1 PF07160.12 gi|289582241|ref|YP_003480707.1| - 0.1 12.5 1.0 0.14 12.0 1.0 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 bZIP_1 PF00170.21 gi|289582241|ref|YP_003480707.1| - 0.11 12.6 0.8 0.18 11.9 0.8 1.3 1 0 0 1 1 1 0 bZIP transcription factor FlaC_arch PF05377.11 gi|289582241|ref|YP_003480707.1| - 0.15 12.5 1.2 0.35 11.3 1.2 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) IFP_35_N PF07334.13 gi|289582241|ref|YP_003480707.1| - 0.16 12.1 0.8 0.26 11.4 0.8 1.5 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus CENP-Q PF13094.6 gi|289582241|ref|YP_003480707.1| - 0.76 10.0 6.5 0.95 9.6 6.5 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit V_ATPase_I PF01496.19 gi|289582241|ref|YP_003480707.1| - 0.84 7.5 1.6 0.87 7.4 1.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.8 gi|289582241|ref|YP_003480707.1| - 0.98 9.5 5.3 0.17 11.9 1.3 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CCDC53 PF10152.9 gi|289582241|ref|YP_003480707.1| - 2 8.8 5.7 2.4 8.6 5.7 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex SMC_N PF02463.19 gi|289582242|ref|YP_003480708.1| - 2.7e-46 157.8 63.1 1.3e-45 155.5 63.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|289582242|ref|YP_003480708.1| - 1.4e-29 102.8 0.0 5.4e-29 100.9 0.0 2.1 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 gi|289582242|ref|YP_003480708.1| - 1.4e-12 48.1 3.2 1.3e-06 28.4 2.8 4.9 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Spc7 PF08317.11 gi|289582242|ref|YP_003480708.1| - 3.1e-08 32.9 147.0 0.0069 15.3 21.1 8.0 2 2 6 8 8 8 6 Spc7 kinetochore protein DUF3584 PF12128.8 gi|289582242|ref|YP_003480708.1| - 5.7e-08 30.8 61.7 4.2e-06 24.6 50.5 4.0 2 2 2 4 4 4 2 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|289582242|ref|YP_003480708.1| - 4.1e-07 29.1 110.5 4.1e-05 22.5 17.2 5.9 3 2 3 6 6 6 3 AAA domain AAA_29 PF13555.6 gi|289582242|ref|YP_003480708.1| - 2.6e-06 27.1 0.1 9e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain Atg14 PF10186.9 gi|289582242|ref|YP_003480708.1| - 3.3e-06 26.4 100.4 0.0087 15.2 23.1 7.2 2 2 4 6 6 6 4 Vacuolar sorting 38 and autophagy-related subunit 14 ATG16 PF08614.11 gi|289582242|ref|YP_003480708.1| - 4.6e-06 27.0 153.2 4.8e-05 23.7 20.0 8.6 2 2 6 8 8 8 5 Autophagy protein 16 (ATG16) AAA_15 PF13175.6 gi|289582242|ref|YP_003480708.1| - 5.1e-05 23.2 9.9 5.1e-05 23.2 9.9 5.2 2 2 2 4 4 3 1 AAA ATPase domain GAS PF13851.6 gi|289582242|ref|YP_003480708.1| - 6.4e-05 22.4 132.6 0.00012 21.5 10.5 7.8 3 2 3 7 7 7 4 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|289582242|ref|YP_003480708.1| - 0.00018 21.5 157.9 0.0012 18.9 23.5 8.9 3 2 6 9 9 9 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rab5-bind PF09311.11 gi|289582242|ref|YP_003480708.1| - 0.00028 20.4 18.4 0.00028 20.4 18.4 6.4 2 2 4 6 6 5 1 Rabaptin-like protein UPF0242 PF06785.11 gi|289582242|ref|YP_003480708.1| - 0.00049 20.3 26.8 0.00049 20.3 26.8 7.7 2 2 5 7 7 7 3 Uncharacterised protein family (UPF0242) N-terminus DUF4201 PF13870.6 gi|289582242|ref|YP_003480708.1| - 0.0008 19.2 7.7 0.0008 19.2 7.7 8.4 4 2 4 8 8 8 2 Domain of unknown function (DUF4201) ZapB PF06005.12 gi|289582242|ref|YP_003480708.1| - 0.00097 19.5 8.1 0.00097 19.5 8.1 13.3 4 2 6 12 12 8 2 Cell division protein ZapB DUF724 PF05266.14 gi|289582242|ref|YP_003480708.1| - 0.0022 17.9 15.5 0.0022 17.9 15.5 7.9 2 2 6 8 8 8 3 Protein of unknown function (DUF724) DUF1664 PF07889.12 gi|289582242|ref|YP_003480708.1| - 0.0026 17.8 5.3 0.0026 17.8 5.3 9.6 3 2 5 10 10 10 4 Protein of unknown function (DUF1664) TMPIT PF07851.13 gi|289582242|ref|YP_003480708.1| - 0.0044 16.3 4.9 0.0044 16.3 4.9 7.6 2 2 7 9 9 9 3 TMPIT-like protein EzrA PF06160.12 gi|289582242|ref|YP_003480708.1| - 0.011 14.0 123.0 0.02 13.1 22.7 5.0 2 2 3 5 5 5 0 Septation ring formation regulator, EzrA TolA_bind_tri PF16331.5 gi|289582242|ref|YP_003480708.1| - 0.011 15.8 2.8 0.011 15.8 2.8 10.2 6 2 4 11 11 10 0 TolA binding protein trimerisation Fez1 PF06818.15 gi|289582242|ref|YP_003480708.1| - 0.021 15.3 131.8 0.016 15.7 17.6 7.3 2 2 4 6 6 6 0 Fez1 DUF4407 PF14362.6 gi|289582242|ref|YP_003480708.1| - 0.028 13.8 107.2 0.028 13.8 17.9 6.5 2 2 2 5 5 5 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|289582242|ref|YP_003480708.1| - 0.034 14.7 185.0 0.24 11.9 27.0 9.4 3 2 6 9 9 9 0 Apg6 coiled-coil region TPR_MLP1_2 PF07926.12 gi|289582242|ref|YP_003480708.1| - 0.097 12.7 144.2 0.18 11.9 18.9 8.4 4 3 2 7 7 7 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 gi|289582242|ref|YP_003480708.1| - 0.19 11.8 34.2 0.91 9.6 5.1 7.0 2 2 5 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|289582242|ref|YP_003480708.1| - 0.23 12.0 56.2 0.29 11.6 3.5 10.6 5 3 5 10 10 9 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 gi|289582242|ref|YP_003480708.1| - 0.33 11.0 83.1 0.014 15.4 3.2 8.3 4 2 5 9 9 9 0 Laminin Domain II Fib_alpha PF08702.10 gi|289582242|ref|YP_003480708.1| - 3.8 7.7 81.5 0.046 13.9 5.6 7.3 2 2 7 9 9 9 0 Fibrinogen alpha/beta chain family Img2 PF05046.14 gi|289582242|ref|YP_003480708.1| - 6.5 7.1 8.7 15 5.9 0.7 4.6 4 1 1 5 5 4 0 Mitochondrial large subunit ribosomal protein (Img2) MscS_porin PF12795.7 gi|289582242|ref|YP_003480708.1| - 9.2 5.7 115.6 0.024 14.2 16.6 6.1 3 2 1 5 5 5 0 Mechanosensitive ion channel porin domain SMC_ScpA PF02616.14 gi|289582243|ref|YP_003480709.1| - 1.8e-14 54.3 0.0 1.4e-09 38.2 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA TAT_signal PF10518.9 gi|289582244|ref|YP_003480710.1| - 0.11 12.4 1.4 0.17 11.8 1.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PNP_UDP_1 PF01048.20 gi|289582245|ref|YP_003480711.1| - 1.8e-46 158.3 0.2 2e-46 158.1 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MatE PF01554.18 gi|289582246|ref|YP_003480712.1| - 4e-54 182.6 37.8 4e-29 101.3 12.8 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|289582246|ref|YP_003480712.1| - 2.1e-11 44.0 19.0 4.7e-10 39.7 6.6 4.7 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|289582246|ref|YP_003480712.1| - 1.2e-06 27.4 3.8 1.2e-06 27.4 3.8 2.7 1 1 1 2 2 2 1 Lipid II flippase MurJ DUF4191 PF13829.6 gi|289582246|ref|YP_003480712.1| - 0.08 12.3 0.2 0.31 10.4 0.2 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Pribosyltran PF00156.27 gi|289582247|ref|YP_003480713.1| - 3.7e-18 65.5 0.0 5.5e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|289582247|ref|YP_003480713.1| - 0.018 14.5 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase ThiC_Rad_SAM PF01964.18 gi|289582248|ref|YP_003480714.1| - 2.8e-192 639.1 0.1 3.3e-192 638.9 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PhzC-PhzF PF02567.16 gi|289582249|ref|YP_003480715.1| - 5.2e-68 229.6 0.0 5.9e-68 229.4 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|289582249|ref|YP_003480715.1| - 0.0073 15.4 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Proline racemase DDE_3 PF13358.6 gi|289582250|ref|YP_003480716.1| - 4e-36 124.0 0.0 7.9e-36 123.0 0.0 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|289582250|ref|YP_003480716.1| - 1.8e-19 69.1 0.0 1.8e-19 69.1 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn helix HTH_32 PF13565.6 gi|289582250|ref|YP_003480716.1| - 2.4e-10 40.9 0.1 1e-09 38.9 0.1 2.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|289582250|ref|YP_003480716.1| - 1.4e-09 37.8 0.2 4.8e-09 36.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|289582250|ref|YP_003480716.1| - 2.9e-09 36.9 0.1 6.3e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|289582250|ref|YP_003480716.1| - 0.00075 19.2 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|289582250|ref|YP_003480716.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor DUF2605 PF10792.9 gi|289582250|ref|YP_003480716.1| - 0.019 14.9 0.7 8.2 6.4 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2605) HTH_Tnp_IS630 PF01710.16 gi|289582250|ref|YP_003480716.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Transposase DUF1778 PF08681.11 gi|289582250|ref|YP_003480716.1| - 0.21 11.5 1.4 8.4 6.4 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1778) PPDK_N PF01326.19 gi|289582253|ref|YP_003480719.1| - 2e-108 362.6 0.1 3e-108 362.0 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|289582253|ref|YP_003480719.1| - 3e-82 276.1 0.1 4.3e-82 275.5 0.1 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|289582253|ref|YP_003480719.1| - 1.5e-27 95.1 3.3 3.8e-27 93.8 3.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|289582253|ref|YP_003480719.1| - 0.001 18.2 0.0 0.0026 16.9 0.0 1.6 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family RdRP PF05183.12 gi|289582253|ref|YP_003480719.1| - 0.016 13.8 0.0 0.09 11.4 0.0 1.9 2 0 0 2 2 2 0 RNA dependent RNA polymerase Epimerase_2 PF02350.19 gi|289582253|ref|YP_003480719.1| - 0.038 12.9 0.0 0.098 11.5 0.0 1.6 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Pyridoxal_deC PF00282.19 gi|289582254|ref|YP_003480720.1| - 5.4e-28 97.8 0.0 7.2e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|289582254|ref|YP_003480720.1| - 8.3e-12 44.7 0.0 9.7e-12 44.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|289582254|ref|YP_003480720.1| - 4.8e-06 26.0 0.0 1.9e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|289582254|ref|YP_003480720.1| - 4.8e-05 22.8 0.2 6.8e-05 22.3 0.2 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.19 gi|289582254|ref|YP_003480720.1| - 5e-05 22.1 0.0 8.4e-05 21.3 0.0 1.3 1 0 0 1 1 1 1 Serine hydroxymethyltransferase DegT_DnrJ_EryC1 PF01041.17 gi|289582254|ref|YP_003480720.1| - 0.0081 15.5 0.5 0.012 15.0 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|289582254|ref|YP_003480720.1| - 0.029 13.1 0.0 0.044 12.5 0.0 1.1 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DUF4401 PF14351.6 gi|289582255|ref|YP_003480721.1| - 0.00046 19.6 10.2 0.00057 19.3 10.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) bcl-2I13 PF12201.8 gi|289582255|ref|YP_003480721.1| - 0.031 14.2 1.5 0.038 13.9 1.5 1.1 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing Hol_Tox PF16935.5 gi|289582255|ref|YP_003480721.1| - 4.5 7.4 5.8 5.5 7.1 0.2 2.3 2 0 0 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) tRNA-synt_1g PF09334.11 gi|289582256|ref|YP_003480722.1| - 6.2e-145 482.8 0.0 7.6e-145 482.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|289582256|ref|YP_003480722.1| - 1.1e-20 73.5 0.0 1.8e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|289582256|ref|YP_003480722.1| - 2.2e-14 52.7 2.9 1.1e-09 37.1 0.3 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|289582256|ref|YP_003480722.1| - 3e-10 39.9 0.0 3.8e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|289582256|ref|YP_003480722.1| - 8.9e-08 32.2 0.0 1.9e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|289582256|ref|YP_003480722.1| - 0.0013 17.8 0.4 1.9 7.3 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|289582256|ref|YP_003480722.1| - 0.042 12.8 0.0 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (R) Miga PF10265.9 gi|289582256|ref|YP_003480722.1| - 0.71 8.8 1.5 1.1 8.1 1.5 1.2 1 0 0 1 1 1 0 Mitoguardin Beta-lactamase PF00144.24 gi|289582257|ref|YP_003480723.1| - 6.8e-62 209.6 2.9 1.2e-61 208.8 2.9 1.3 1 0 0 1 1 1 1 Beta-lactamase Pex14_N PF04695.13 gi|289582257|ref|YP_003480723.1| - 0.053 14.2 2.0 0.13 12.9 2.0 1.6 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TAT_signal PF10518.9 gi|289582257|ref|YP_003480723.1| - 0.068 13.0 0.1 0.068 13.0 0.1 3.3 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.7 gi|289582258|ref|YP_003480724.1| - 1.1e-05 25.3 0.0 2.7e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain SSP160 PF06933.11 gi|289582258|ref|YP_003480724.1| - 2.5 6.2 6.0 3.5 5.7 6.0 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Cadherin_4 PF17803.1 gi|289582258|ref|YP_003480724.1| - 4.1 8.1 11.2 8.4 7.1 1.9 3.2 3 0 0 3 3 3 0 Bacterial cadherin-like domain GYD PF08734.11 gi|289582259|ref|YP_003480725.1| - 3.9e-18 65.2 0.1 4.2e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 GYD domain PK PF00224.21 gi|289582260|ref|YP_003480726.1| - 1.2e-117 392.8 6.2 1.7e-117 392.3 6.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|289582260|ref|YP_003480726.1| - 2.9e-31 108.1 2.0 4.2e-31 107.6 0.8 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|289582260|ref|YP_003480726.1| - 5.7e-10 38.8 4.3 6.1e-10 38.7 0.4 3.1 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|289582260|ref|YP_003480726.1| - 0.00052 19.2 1.6 0.0011 18.1 0.4 2.0 1 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Isochorismatase PF00857.20 gi|289582260|ref|YP_003480726.1| - 0.066 13.4 0.2 3.3 7.8 0.1 2.6 1 1 0 2 2 2 0 Isochorismatase family Presenilin PF01080.17 gi|289582261|ref|YP_003480727.1| - 0.17 10.6 0.5 0.22 10.3 0.5 1.2 1 0 0 1 1 1 0 Presenilin SOG2 PF10428.9 gi|289582261|ref|YP_003480727.1| - 1 8.5 9.3 1 8.5 9.3 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein DUF892 PF05974.12 gi|289582262|ref|YP_003480728.1| - 4.4e-13 49.6 0.2 5.2e-13 49.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Cyclase PF04199.13 gi|289582264|ref|YP_003480730.1| - 4.6e-24 85.2 0.4 5.8e-24 84.9 0.4 1.1 1 0 0 1 1 1 1 Putative cyclase Diphthami_syn_2 PF01902.17 gi|289582265|ref|YP_003480731.1| - 4.4e-56 189.8 0.0 6.7e-56 189.2 0.0 1.2 1 0 0 1 1 1 1 Diphthamide synthase DUF373 PF04123.13 gi|289582266|ref|YP_003480732.1| - 5.6e-115 384.4 5.8 6.8e-115 384.1 5.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) CbiG_N PF11760.8 gi|289582266|ref|YP_003480732.1| - 0.025 14.6 1.4 0.32 11.0 0.3 2.9 2 1 1 3 3 3 0 Cobalamin synthesis G N-terminal PRA1 PF03208.19 gi|289582266|ref|YP_003480732.1| - 1 9.0 8.3 0.075 12.7 2.1 2.0 2 0 0 2 2 2 0 PRA1 family protein EI24 PF07264.11 gi|289582266|ref|YP_003480732.1| - 2.8 8.1 6.9 14 5.9 6.9 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) SelP_N PF04592.14 gi|289582266|ref|YP_003480732.1| - 4 6.8 8.3 7.2 5.9 8.3 1.5 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Peptidase_S49 PF01343.18 gi|289582267|ref|YP_003480733.1| - 7.3e-39 133.2 0.0 1.2e-38 132.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|289582267|ref|YP_003480733.1| - 0.064 13.1 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 Clp protease SDH_sah PF01972.16 gi|289582267|ref|YP_003480733.1| - 0.11 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DUF1771 PF08590.10 gi|289582268|ref|YP_003480734.1| - 0.11 12.9 33.8 0.36 11.2 3.0 5.2 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) YtxH PF12732.7 gi|289582268|ref|YP_003480734.1| - 0.66 10.5 35.0 1.8e+04 -18.6 35.0 5.2 1 1 0 1 1 1 0 YtxH-like protein Tubulin PF00091.25 gi|289582269|ref|YP_003480735.1| - 9.2e-26 91.3 0.1 2.2e-25 90.0 0.1 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|289582269|ref|YP_003480735.1| - 4.3e-07 29.5 2.5 4.4e-07 29.4 0.2 2.0 2 1 0 2 2 2 1 Tubulin like NAD_binding_10 PF13460.6 gi|289582271|ref|YP_003480737.1| - 8.3e-14 51.9 0.0 1.2e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289582271|ref|YP_003480737.1| - 2.3e-13 50.2 0.0 6.1e-13 48.8 0.0 1.5 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|289582271|ref|YP_003480737.1| - 3.1e-06 27.4 0.1 4.9e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.19 gi|289582271|ref|YP_003480737.1| - 9.2e-06 24.9 0.0 2.7e-05 23.3 0.0 1.7 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1731 PF08338.11 gi|289582271|ref|YP_003480737.1| - 0.00035 20.3 0.0 0.00079 19.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) GDP_Man_Dehyd PF16363.5 gi|289582271|ref|YP_003480737.1| - 0.0012 18.3 0.0 0.0036 16.7 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 gi|289582271|ref|YP_003480737.1| - 0.0014 19.1 0.1 0.0027 18.3 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|289582271|ref|YP_003480737.1| - 0.0022 17.6 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|289582271|ref|YP_003480737.1| - 0.0081 15.8 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.19 gi|289582273|ref|YP_003480739.1| - 1.7e-11 44.7 0.1 3.1e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|289582273|ref|YP_003480739.1| - 3.5e-11 43.2 0.0 8.4e-11 42.0 0.0 1.7 1 1 0 1 1 1 1 DHH family PhnA_Zn_Ribbon PF08274.12 gi|289582274|ref|YP_003480740.1| - 0.00028 20.8 0.9 0.013 15.4 0.1 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon FYVE PF01363.21 gi|289582274|ref|YP_003480740.1| - 0.008 16.3 0.5 0.01 16.0 0.5 1.2 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.7 gi|289582274|ref|YP_003480740.1| - 0.0098 15.9 0.5 0.014 15.4 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|289582274|ref|YP_003480740.1| - 0.021 14.8 2.0 0.069 13.1 2.0 1.7 1 1 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|289582274|ref|YP_003480740.1| - 0.025 14.5 1.3 0.32 10.9 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf_C2H2_13 PF18508.1 gi|289582274|ref|YP_003480740.1| - 0.031 13.8 2.6 0.063 12.9 0.2 2.0 1 1 1 2 2 2 0 Zinc finger domain A2L_zn_ribbon PF08792.10 gi|289582274|ref|YP_003480740.1| - 0.071 12.8 0.8 2.3 8.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.19 gi|289582274|ref|YP_003480740.1| - 0.088 12.8 0.4 0.088 12.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Gin PF10764.9 gi|289582274|ref|YP_003480740.1| - 0.13 12.2 3.1 1.1 9.2 0.4 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin Prok-RING_1 PF14446.6 gi|289582274|ref|YP_003480740.1| - 0.34 10.9 4.2 0.63 10.0 4.1 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_9 PF14369.6 gi|289582274|ref|YP_003480740.1| - 0.85 9.9 4.4 3.2 8.1 4.4 1.8 1 1 1 2 2 2 0 zinc-ribbon Glyco_transf_21 PF13506.6 gi|289582275|ref|YP_003480741.1| - 0.003 17.0 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 NUDIX PF00293.28 gi|289582277|ref|YP_003480743.1| - 2.9e-13 50.0 0.1 4e-13 49.5 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain Bac_luciferase PF00296.20 gi|289582278|ref|YP_003480744.1| - 0.00034 20.1 2.7 0.00044 19.8 2.7 1.3 1 0 0 1 1 1 1 Luciferase-like monooxygenase Creatininase PF02633.14 gi|289582279|ref|YP_003480745.1| - 5.8e-67 225.7 4.6 6.6e-67 225.5 4.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DAO PF01266.24 gi|289582280|ref|YP_003480746.1| - 1.4e-57 195.9 10.0 1.6e-57 195.7 10.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289582280|ref|YP_003480746.1| - 1.1e-07 31.4 2.0 9e-05 21.8 0.7 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289582280|ref|YP_003480746.1| - 4.3e-07 30.1 1.3 1.2e-06 28.6 1.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|289582280|ref|YP_003480746.1| - 2.7e-06 27.1 0.6 6.1e-06 25.9 0.6 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|289582280|ref|YP_003480746.1| - 3.6e-05 23.0 1.4 5.8e-05 22.3 1.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|289582280|ref|YP_003480746.1| - 0.00013 21.5 0.9 0.0056 16.1 0.9 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|289582280|ref|YP_003480746.1| - 0.00039 20.3 0.3 0.00077 19.4 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|289582280|ref|YP_003480746.1| - 0.0009 18.4 2.9 0.0009 18.4 2.9 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|289582280|ref|YP_003480746.1| - 0.0024 18.4 0.3 0.0063 17.1 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289582280|ref|YP_003480746.1| - 0.0028 16.9 0.8 0.0047 16.2 0.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|289582280|ref|YP_003480746.1| - 0.0038 17.6 0.0 0.0068 16.8 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|289582280|ref|YP_003480746.1| - 0.0056 16.0 0.4 0.0097 15.2 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|289582280|ref|YP_003480746.1| - 0.0062 15.3 0.7 0.0094 14.7 0.7 1.2 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|289582280|ref|YP_003480746.1| - 0.01 15.1 0.4 0.019 14.2 0.4 1.4 1 0 0 1 1 1 1 Thi4 family ThiF PF00899.21 gi|289582280|ref|YP_003480746.1| - 0.036 13.4 0.2 0.061 12.7 0.2 1.3 1 0 0 1 1 1 0 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|289582280|ref|YP_003480746.1| - 0.13 11.8 0.1 0.2 11.2 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|289582280|ref|YP_003480746.1| - 0.16 10.8 1.7 0.33 9.8 1.4 1.6 2 0 0 2 2 2 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 gi|289582280|ref|YP_003480746.1| - 0.16 11.3 0.3 0.31 10.4 0.3 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AsnC_trans_reg PF01037.21 gi|289582281|ref|YP_003480747.1| - 2.4e-09 37.0 0.1 2.7e-09 36.9 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Thymidylate_kin PF02223.17 gi|289582282|ref|YP_003480748.1| - 7.3e-37 126.8 0.0 9.2e-37 126.5 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|289582282|ref|YP_003480748.1| - 4.3e-06 26.7 0.0 1.6e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|289582282|ref|YP_003480748.1| - 2.3e-05 24.6 0.0 9.6e-05 22.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289582282|ref|YP_003480748.1| - 4.5e-05 24.0 0.0 0.00014 22.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|289582282|ref|YP_003480748.1| - 0.0091 16.4 0.0 0.066 13.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289582282|ref|YP_003480748.1| - 0.062 13.5 0.2 0.097 12.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|289582282|ref|YP_003480748.1| - 0.065 13.5 0.0 0.26 11.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain CPT PF07931.12 gi|289582282|ref|YP_003480748.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.7 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DUF1772 PF08592.11 gi|289582283|ref|YP_003480749.1| - 0.00065 20.0 1.8 0.0072 16.6 1.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1772) SKG6 PF08693.10 gi|289582283|ref|YP_003480749.1| - 0.1 12.0 0.3 0.1 12.0 0.3 2.7 2 0 0 2 2 2 0 Transmembrane alpha-helix domain FA_desaturase PF00487.24 gi|289582283|ref|YP_003480749.1| - 1.1 9.0 6.1 0.15 11.9 2.3 1.5 2 0 0 2 2 2 0 Fatty acid desaturase NAD_binding_10 PF13460.6 gi|289582284|ref|YP_003480750.1| - 1.9e-28 99.6 0.0 2.6e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289582284|ref|YP_003480750.1| - 1.9e-19 70.1 0.0 7.4e-19 68.2 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|289582284|ref|YP_003480750.1| - 3.9e-13 49.5 0.0 5.2e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|289582284|ref|YP_003480750.1| - 6e-13 48.4 0.0 4.5e-11 42.3 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289582284|ref|YP_003480750.1| - 1.3e-10 41.2 0.0 2e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|289582284|ref|YP_003480750.1| - 6.3e-09 35.3 0.0 0.00048 19.3 0.0 2.3 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|289582284|ref|YP_003480750.1| - 6e-08 32.2 0.0 0.0074 15.5 0.0 2.5 1 1 2 3 3 3 2 Male sterility protein KR PF08659.10 gi|289582284|ref|YP_003480750.1| - 0.00037 20.4 0.0 0.0012 18.8 0.0 1.7 2 0 0 2 2 2 1 KR domain adh_short PF00106.25 gi|289582284|ref|YP_003480750.1| - 0.0005 19.6 0.0 0.00072 19.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.15 gi|289582284|ref|YP_003480750.1| - 0.0015 17.7 0.7 0.017 14.3 0.0 2.6 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein DapB_N PF01113.20 gi|289582284|ref|YP_003480750.1| - 0.028 14.5 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.15 gi|289582284|ref|YP_003480750.1| - 0.066 13.4 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.6 gi|289582284|ref|YP_003480750.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 F420_oxidored PF03807.17 gi|289582284|ref|YP_003480750.1| - 0.14 12.7 0.0 0.31 11.6 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Tubulin PF00091.25 gi|289582285|ref|YP_003480751.1| - 1.9e-27 96.8 0.0 3.2e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|289582285|ref|YP_003480751.1| - 0.034 13.3 0.1 0.055 12.6 0.1 1.5 1 0 0 1 1 1 0 Tubulin like Endotoxin_C2 PF18449.1 gi|289582285|ref|YP_003480751.1| - 0.16 12.3 1.2 0.3 11.4 0.1 2.0 2 0 0 2 2 2 0 Delta endotoxin CofC PF01983.16 gi|289582286|ref|YP_003480752.1| - 2.3e-38 131.6 0.0 3.8e-27 94.9 0.0 2.0 2 0 0 2 2 2 2 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|289582286|ref|YP_003480752.1| - 0.0002 21.8 0.8 0.00031 21.2 0.8 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain DAO PF01266.24 gi|289582287|ref|YP_003480753.1| - 6.5e-45 154.2 0.8 7.3e-45 154.1 0.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289582287|ref|YP_003480753.1| - 0.00024 20.0 0.2 0.004 15.9 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|289582287|ref|YP_003480753.1| - 0.00028 20.3 0.0 0.00039 19.8 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|289582287|ref|YP_003480753.1| - 0.002 17.4 0.1 0.013 14.7 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Prenyltrans PF00432.21 gi|289582287|ref|YP_003480753.1| - 0.0058 16.3 0.2 0.18 11.6 0.2 2.7 2 1 0 2 2 2 1 Prenyltransferase and squalene oxidase repeat Pyr_redox_2 PF07992.14 gi|289582287|ref|YP_003480753.1| - 0.016 14.4 0.6 0.12 11.6 0.6 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|289582287|ref|YP_003480753.1| - 0.019 14.6 0.2 0.62 9.7 0.2 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|289582287|ref|YP_003480753.1| - 0.048 13.7 1.2 0.13 12.3 0.3 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|289582287|ref|YP_003480753.1| - 0.1 11.7 0.2 2.3 7.2 0.2 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Radical_SAM PF04055.21 gi|289582288|ref|YP_003480754.1| - 9.8e-11 42.3 0.0 1.9e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF4350 PF14258.6 gi|289582289|ref|YP_003480755.1| - 0.00013 22.3 0.4 0.0006 20.2 0.2 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|289582289|ref|YP_003480755.1| - 0.00018 21.1 0.0 0.00074 19.1 0.0 2.0 2 0 0 2 2 2 1 ABC-type uncharacterized transport system Rep_1B PF17873.1 gi|289582289|ref|YP_003480755.1| - 0.0068 16.2 0.1 0.026 14.4 0.0 2.0 1 1 0 1 1 1 1 Replicase polyprotein 1ab Peptidase_S49 PF01343.18 gi|289582290|ref|YP_003480756.1| - 4.1e-17 62.5 2.4 2.8e-10 40.3 0.3 2.2 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|289582290|ref|YP_003480756.1| - 1.4e-07 31.6 1.3 0.00011 22.2 0.2 2.2 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.16 gi|289582290|ref|YP_003480756.1| - 0.13 11.2 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Peptidase_S49_N PF08496.10 gi|289582290|ref|YP_003480756.1| - 0.82 9.7 2.7 0.95 9.5 0.3 2.2 2 1 1 3 3 3 0 Peptidase family S49 N-terminal Radical_SAM PF04055.21 gi|289582292|ref|YP_003480758.1| - 6.4e-13 49.4 0.0 1.3e-12 48.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily MycE_N PF17843.1 gi|289582292|ref|YP_003480758.1| - 0.46 11.0 3.2 4.8 7.7 0.6 2.6 2 0 0 2 2 2 0 MycE methyltransferase N-terminal PQQ_2 PF13360.6 gi|289582293|ref|YP_003480759.1| - 9.4e-28 97.4 12.9 3.1e-14 53.1 2.0 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289582293|ref|YP_003480759.1| - 8e-20 70.7 25.8 2.6e-05 24.5 0.2 7.8 9 0 0 9 9 9 6 PQQ-like domain PQQ PF01011.21 gi|289582293|ref|YP_003480759.1| - 6.3e-15 54.3 8.0 0.00023 20.9 0.0 6.8 7 1 1 8 8 8 4 PQQ enzyme repeat MCPsignal PF00015.21 gi|289582294|ref|YP_003480760.1| - 6.5e-40 136.7 26.9 6.5e-40 136.7 26.9 5.7 3 1 4 7 7 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289582294|ref|YP_003480760.1| - 4.5e-08 33.3 24.6 0.00039 20.7 0.3 7.5 8 0 0 8 8 7 2 HAMP domain Laminin_II PF06009.12 gi|289582294|ref|YP_003480760.1| - 1.3e-05 25.2 38.5 0.0017 18.4 4.9 5.3 3 2 2 5 5 5 2 Laminin Domain II DUF948 PF06103.11 gi|289582294|ref|YP_003480760.1| - 3.4e-05 24.0 48.3 0.0003 21.0 4.2 7.4 5 2 1 6 6 5 1 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|289582294|ref|YP_003480760.1| - 4.1e-05 22.0 29.0 0.041 12.1 8.1 3.9 2 1 1 3 3 3 3 Septation ring formation regulator, EzrA RPW8 PF05659.11 gi|289582294|ref|YP_003480760.1| - 0.0052 16.5 10.7 2.7 7.7 0.1 4.7 3 1 2 5 5 5 2 Arabidopsis broad-spectrum mildew resistance protein RPW8 Spc7 PF08317.11 gi|289582294|ref|YP_003480760.1| - 0.0052 15.7 41.3 0.051 12.5 8.8 3.6 2 2 1 3 3 3 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|289582294|ref|YP_003480760.1| - 0.0054 16.8 35.9 0.12 12.4 5.0 5.5 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|289582294|ref|YP_003480760.1| - 0.0074 16.7 30.1 0.084 13.3 0.8 6.2 3 3 1 5 5 5 1 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|289582294|ref|YP_003480760.1| - 0.0083 14.8 36.5 0.18 10.4 17.2 2.3 1 1 1 2 2 2 2 AAA domain Syntaxin_2 PF14523.6 gi|289582294|ref|YP_003480760.1| - 0.017 15.5 11.9 1.4 9.4 0.3 4.9 3 1 2 5 5 5 0 Syntaxin-like protein Fib_alpha PF08702.10 gi|289582294|ref|YP_003480760.1| - 0.024 14.8 24.4 3.1 8.0 1.9 5.5 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Med30 PF11315.8 gi|289582294|ref|YP_003480760.1| - 0.025 14.8 14.5 0.87 9.8 1.4 3.8 3 2 0 3 3 3 0 Mediator complex subunit 30 Occludin_ELL PF07303.13 gi|289582294|ref|YP_003480760.1| - 0.097 13.4 0.1 0.097 13.4 0.1 4.8 3 2 2 5 5 5 0 Occludin homology domain DUF2203 PF09969.9 gi|289582294|ref|YP_003480760.1| - 0.11 13.3 35.3 0.059 14.1 1.5 5.5 3 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) COG2 PF06148.11 gi|289582294|ref|YP_003480760.1| - 0.11 12.5 33.4 0.78 9.8 2.6 5.8 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 TSNAXIP1_N PF15739.5 gi|289582294|ref|YP_003480760.1| - 0.12 12.8 0.2 0.12 12.8 0.2 5.1 5 0 0 5 5 5 0 Translin-associated factor X-interacting N-terminus sCache_2 PF17200.4 gi|289582294|ref|YP_003480760.1| - 0.26 11.1 11.1 11 5.9 0.1 4.2 3 2 0 3 3 3 0 Single Cache domain 2 DASH_Dad3 PF08656.10 gi|289582294|ref|YP_003480760.1| - 0.29 11.2 1.6 1.9 8.6 0.1 3.1 3 0 0 3 3 2 0 DASH complex subunit Dad3 Sec34 PF04136.15 gi|289582294|ref|YP_003480760.1| - 0.36 10.7 22.2 2 8.3 0.1 6.1 4 2 3 7 7 7 0 Sec34-like family TPR_MLP1_2 PF07926.12 gi|289582294|ref|YP_003480760.1| - 0.59 10.2 50.9 0.21 11.7 3.3 4.9 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein AKNA PF12443.8 gi|289582294|ref|YP_003480760.1| - 0.7 10.6 4.3 0.8 10.4 0.2 3.2 3 0 0 3 3 2 0 AT-hook-containing transcription factor KxDL PF10241.9 gi|289582294|ref|YP_003480760.1| - 0.73 10.2 11.7 19 5.6 0.0 5.5 3 3 4 7 7 6 0 Uncharacterized conserved protein Med28 PF11594.8 gi|289582294|ref|YP_003480760.1| - 1.1 9.4 5.8 0.5 10.4 0.9 2.9 2 1 0 2 2 2 0 Mediator complex subunit 28 Fez1 PF06818.15 gi|289582294|ref|YP_003480760.1| - 1.1 9.6 34.5 0.88 10.0 8.8 3.6 2 1 1 3 3 3 0 Fez1 Snapin_Pallidin PF14712.6 gi|289582294|ref|YP_003480760.1| - 1.4 9.4 18.2 9.6 6.7 0.6 5.5 3 2 2 6 6 5 0 Snapin/Pallidin BLOC1_2 PF10046.9 gi|289582294|ref|YP_003480760.1| - 1.9 8.8 34.6 0.086 13.2 0.6 6.8 4 2 3 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|289582294|ref|YP_003480760.1| - 2.1 8.4 23.5 1.6 8.8 1.2 5.1 1 1 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus MAD PF05557.13 gi|289582294|ref|YP_003480760.1| - 4.6 5.5 34.5 0.093 11.1 16.4 2.6 1 1 2 3 3 3 0 Mitotic checkpoint protein Atg14 PF10186.9 gi|289582294|ref|YP_003480760.1| - 5.4 6.0 20.1 1.6 7.7 1.7 4.0 2 2 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMPIT PF07851.13 gi|289582294|ref|YP_003480760.1| - 6.4 5.9 23.2 0.43 9.8 1.3 4.3 2 2 3 5 5 5 0 TMPIT-like protein Mce4_CUP1 PF11887.8 gi|289582294|ref|YP_003480760.1| - 6.4 6.1 20.0 3 7.2 3.3 3.7 2 2 2 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative ZapB PF06005.12 gi|289582294|ref|YP_003480760.1| - 7 7.2 25.8 15 6.1 0.2 5.5 4 1 0 4 4 4 0 Cell division protein ZapB SAICAR_synt PF01259.18 gi|289582295|ref|YP_003480761.1| - 3e-24 86.0 0.0 6.4e-24 84.9 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase DUF3673 PF12425.8 gi|289582295|ref|YP_003480761.1| - 0.092 12.7 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3673) SH3_6 PF12913.7 gi|289582295|ref|YP_003480761.1| - 0.13 11.8 0.3 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 SH3 domain (SH3b1 type) ABC_trans_CmpB PF06541.11 gi|289582296|ref|YP_003480762.1| - 0.012 15.9 0.4 0.013 15.8 0.4 1.1 1 0 0 1 1 1 0 Putative ABC-transporter type IV RRM PF10378.9 gi|289582296|ref|YP_003480762.1| - 0.096 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative RRM domain Plant_vir_prot PF01307.17 gi|289582296|ref|YP_003480762.1| - 0.13 12.5 0.1 0.17 12.1 0.1 1.2 1 0 0 1 1 1 0 Plant viral movement protein FmdA_AmdA PF03069.15 gi|289582297|ref|YP_003480763.1| - 2.1e-58 198.0 0.0 1.9e-56 191.6 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family DZR PF12773.7 gi|289582297|ref|YP_003480763.1| - 0.047 13.7 0.4 0.089 12.8 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|289582297|ref|YP_003480763.1| - 0.074 13.2 6.3 0.3 11.2 0.9 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|289582297|ref|YP_003480763.1| - 0.082 12.6 3.1 0.49 10.1 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|289582297|ref|YP_003480763.1| - 0.19 11.8 0.1 0.41 10.7 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|289582297|ref|YP_003480763.1| - 0.19 11.5 1.2 4.4 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|289582297|ref|YP_003480763.1| - 0.2 11.4 0.2 0.45 10.3 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein S27 DUF4379 PF14311.6 gi|289582297|ref|YP_003480763.1| - 0.22 11.9 1.2 0.58 10.6 1.2 1.7 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|289582297|ref|YP_003480763.1| - 0.46 10.7 2.4 1.2 9.3 2.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|289582297|ref|YP_003480763.1| - 0.61 9.6 2.6 16 5.1 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|289582297|ref|YP_003480763.1| - 0.81 9.3 2.1 7.5 6.3 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Formyl_trans_N PF00551.19 gi|289582299|ref|YP_003480765.1| - 7e-42 143.2 0.0 9.5e-42 142.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|289582299|ref|YP_003480765.1| - 9.1e-11 41.6 0.4 5e-10 39.2 0.2 2.1 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|289582299|ref|YP_003480765.1| - 2.7e-06 27.0 0.8 7.9e-06 25.5 0.1 2.2 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|289582299|ref|YP_003480765.1| - 0.00038 21.0 0.2 0.00091 19.8 0.2 1.6 1 0 0 1 1 1 1 ACT domain ACT_5 PF13710.6 gi|289582299|ref|YP_003480765.1| - 0.027 14.3 0.1 0.067 13.0 0.1 1.7 1 0 0 1 1 1 0 ACT domain Lge1 PF11488.8 gi|289582299|ref|YP_003480765.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 Polysacc_deac_1 PF01522.21 gi|289582301|ref|YP_003480767.1| - 3e-07 30.4 0.0 7.3e-07 29.1 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase SHOCT PF09851.9 gi|289582302|ref|YP_003480768.1| - 1.9e-08 33.7 2.9 3.3e-08 33.0 2.9 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|289582302|ref|YP_003480768.1| - 0.00012 22.0 4.7 0.00014 21.9 3.2 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1707) Cation_efflux PF01545.21 gi|289582302|ref|YP_003480768.1| - 5.9 6.6 8.5 6.9 6.3 8.5 1.1 1 0 0 1 1 1 0 Cation efflux family NAD_binding_9 PF13454.6 gi|289582303|ref|YP_003480769.1| - 9.2e-17 61.5 0.1 1.4e-09 38.1 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|289582303|ref|YP_003480769.1| - 4e-10 39.4 0.0 3.7e-07 29.7 0.0 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|289582303|ref|YP_003480769.1| - 4.8e-10 39.1 0.0 1.1e-09 38.0 0.0 1.5 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 gi|289582303|ref|YP_003480769.1| - 2e-05 24.0 0.0 0.099 11.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289582303|ref|YP_003480769.1| - 2.5e-05 24.0 4.4 0.48 10.0 0.0 4.1 2 2 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|289582303|ref|YP_003480769.1| - 0.024 14.9 0.2 3.4 8.0 0.0 2.7 2 1 0 2 2 2 0 NAD(P)-binding Rossmann-like domain PS_pyruv_trans PF04230.13 gi|289582303|ref|YP_003480769.1| - 0.031 14.2 0.0 0.39 10.6 0.0 2.3 3 0 0 3 3 3 0 Polysaccharide pyruvyl transferase TrkA_N PF02254.18 gi|289582303|ref|YP_003480769.1| - 0.033 14.5 0.0 0.64 10.3 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain Rhodanese PF00581.20 gi|289582304|ref|YP_003480770.1| - 7.3e-14 52.2 0.0 8.3e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain PurS PF02700.14 gi|289582305|ref|YP_003480771.1| - 4.3e-26 90.9 0.0 4.8e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.24 gi|289582305|ref|YP_003480771.1| - 0.0098 15.3 0.1 0.012 15.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SIMPL PF04402.14 gi|289582305|ref|YP_003480771.1| - 0.09 13.2 0.2 0.1 13.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) GATase_5 PF13507.6 gi|289582306|ref|YP_003480772.1| - 1.4e-41 142.3 0.0 1.8e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|289582306|ref|YP_003480772.1| - 9.7e-07 28.7 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|289582306|ref|YP_003480772.1| - 6.4e-05 22.6 0.0 9.2e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|289582306|ref|YP_003480772.1| - 0.00017 21.4 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family IL33 PF15095.6 gi|289582306|ref|YP_003480772.1| - 0.17 11.3 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 Interleukin 33 Glyoxalase PF00903.25 gi|289582307|ref|YP_003480773.1| - 3.9e-14 52.9 0.0 5.6e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|289582307|ref|YP_003480773.1| - 1.6e-06 28.8 0.2 2.5e-06 28.2 0.2 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|289582307|ref|YP_003480773.1| - 0.00048 20.1 0.0 0.0041 17.1 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Ribosomal_L32e PF01655.18 gi|289582307|ref|YP_003480773.1| - 0.23 11.9 0.0 0.3 11.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L32 Zn-ribbon_8 PF09723.10 gi|289582309|ref|YP_003480775.1| - 0.0019 18.3 2.1 0.48 10.6 0.2 2.2 2 0 0 2 2 2 2 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|289582309|ref|YP_003480775.1| - 0.0021 17.9 1.5 0.2 11.6 0.1 2.2 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|289582309|ref|YP_003480775.1| - 0.016 15.1 0.9 0.21 11.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.19 gi|289582309|ref|YP_003480775.1| - 0.026 14.5 0.1 0.032 14.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|289582309|ref|YP_003480775.1| - 0.035 14.1 1.0 5.5 7.1 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like UPF0547 PF10571.9 gi|289582309|ref|YP_003480775.1| - 0.041 14.0 2.6 2.9 8.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|289582309|ref|YP_003480775.1| - 0.045 13.7 2.3 0.35 10.8 2.2 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_10 PF10058.9 gi|289582309|ref|YP_003480775.1| - 0.092 12.5 1.3 0.22 11.3 1.2 1.6 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin PF00301.20 gi|289582309|ref|YP_003480775.1| - 0.12 12.5 3.2 1.1 9.3 3.2 2.0 1 1 0 1 1 1 0 Rubredoxin Ribonuc_red_sm PF00268.21 gi|289582310|ref|YP_003480776.1| - 1.6e-79 267.3 0.0 2.4e-79 266.7 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain HD_4 PF13328.6 gi|289582310|ref|YP_003480776.1| - 0.099 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 HD domain Ribonuc_red_lgC PF02867.15 gi|289582311|ref|YP_003480777.1| - 1.4e-176 588.1 0.0 1.7e-176 587.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|289582311|ref|YP_003480777.1| - 1.2e-20 73.2 0.8 2.8e-20 72.1 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain FYRC PF05965.14 gi|289582311|ref|YP_003480777.1| - 0.18 12.0 0.0 8.5 6.6 0.0 2.7 3 0 0 3 3 3 0 F/Y rich C-terminus ATP-cone PF03477.16 gi|289582312|ref|YP_003480778.1| - 6.8e-16 58.6 0.2 8.9e-16 58.2 0.2 1.2 1 0 0 1 1 1 1 ATP cone domain 4HBT PF03061.22 gi|289582313|ref|YP_003480779.1| - 1.7e-13 50.7 0.7 2.5e-13 50.2 0.7 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF1328 PF07043.13 gi|289582314|ref|YP_003480780.1| - 6.4e-11 42.3 19.2 8.6e-11 41.9 19.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF3094 PF11293.8 gi|289582314|ref|YP_003480780.1| - 2.4 7.9 4.4 6.2 6.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) DUF2973 PF11189.8 gi|289582314|ref|YP_003480780.1| - 6.5 6.9 9.9 1.1 9.4 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2973) SecG PF03840.14 gi|289582314|ref|YP_003480780.1| - 9.9 6.3 12.8 4.1 7.5 3.1 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit AFOR_C PF01314.18 gi|289582315|ref|YP_003480781.1| - 9e-118 393.6 5.4 1.1e-117 393.3 5.4 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|289582315|ref|YP_003480781.1| - 5.1e-74 248.4 0.0 7.5e-74 247.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain YdjM PF04307.14 gi|289582316|ref|YP_003480782.1| - 1.7e-05 24.2 21.5 0.00023 20.5 21.5 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PRA1 PF03208.19 gi|289582316|ref|YP_003480782.1| - 0.79 9.3 8.0 0.37 10.4 4.9 1.8 1 1 1 2 2 2 0 PRA1 family protein CMD PF02627.20 gi|289582317|ref|YP_003480783.1| - 6.3e-12 45.4 0.1 1.5e-11 44.2 0.0 1.7 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family PSK_trans_fac PF07704.11 gi|289582318|ref|YP_003480784.1| - 1.1 10.0 7.1 0.63 10.8 2.6 2.0 2 0 0 2 2 2 0 Rv0623-like transcription factor AzlD PF05437.12 gi|289582320|ref|YP_003480786.1| - 5.1e-16 58.7 7.6 5.8e-16 58.5 7.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|289582321|ref|YP_003480787.1| - 5.5e-37 127.2 16.9 5.5e-37 127.2 16.9 1.8 2 0 0 2 2 2 1 AzlC protein ThiS PF02597.20 gi|289582322|ref|YP_003480788.1| - 4.2e-19 69.0 0.1 4.9e-19 68.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|289582322|ref|YP_003480788.1| - 0.026 14.9 0.0 0.03 14.7 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Ub-Mut7C PF14451.6 gi|289582322|ref|YP_003480788.1| - 0.081 12.8 0.1 8.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin TGS PF02824.21 gi|289582322|ref|YP_003480788.1| - 0.16 12.0 0.6 0.35 11.0 0.0 1.8 2 1 0 2 2 2 0 TGS domain TAT_signal PF10518.9 gi|289582323|ref|YP_003480789.1| - 0.058 13.3 0.1 0.088 12.7 0.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4131 PF13567.6 gi|289582324|ref|YP_003480790.1| - 1.9 8.1 5.3 0.58 9.8 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) PadR PF03551.14 gi|289582325|ref|YP_003480791.1| - 8.1e-13 48.1 0.2 9.7e-13 47.9 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|289582325|ref|YP_003480791.1| - 0.00037 20.4 0.0 0.003 17.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|289582325|ref|YP_003480791.1| - 0.00038 20.9 0.0 0.00048 20.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|289582325|ref|YP_003480791.1| - 0.0052 16.6 0.0 0.0075 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|289582325|ref|YP_003480791.1| - 0.0091 15.8 0.0 0.0096 15.7 0.0 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|289582325|ref|YP_003480791.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|289582325|ref|YP_003480791.1| - 0.027 14.3 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|289582325|ref|YP_003480791.1| - 0.033 14.3 0.1 0.038 14.1 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF505 PF04458.12 gi|289582325|ref|YP_003480791.1| - 0.056 11.8 0.0 0.06 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) NUDIX PF00293.28 gi|289582326|ref|YP_003480792.1| - 1.3e-11 44.6 0.3 1.9e-11 44.1 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain TGT PF01702.18 gi|289582330|ref|YP_003480796.1| - 8.7e-77 258.6 0.0 1.1e-76 258.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|289582330|ref|YP_003480796.1| - 0.13 12.6 0.0 13 6.1 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation NosD PF05048.13 gi|289582331|ref|YP_003480797.1| - 1.1e-26 93.6 3.1 2.2e-21 76.2 3.1 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|289582331|ref|YP_003480797.1| - 8.8e-18 64.6 1.8 8.8e-18 64.6 1.8 2.5 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|289582331|ref|YP_003480797.1| - 2.2e-17 63.6 0.5 3.8e-17 62.8 0.5 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.11 gi|289582331|ref|YP_003480797.1| - 0.00038 19.9 5.2 0.01 15.2 0.2 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) Pertactin PF03212.14 gi|289582331|ref|YP_003480797.1| - 0.036 14.0 0.4 0.11 12.5 0.4 1.8 1 0 0 1 1 1 0 Pertactin Pectinesterase PF01095.19 gi|289582331|ref|YP_003480797.1| - 0.13 10.9 0.3 0.22 10.2 0.3 1.3 1 0 0 1 1 1 0 Pectinesterase ABC_tran PF00005.27 gi|289582332|ref|YP_003480798.1| - 9.1e-28 97.5 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582332|ref|YP_003480798.1| - 1.8e-18 67.4 0.0 1.5e-08 34.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|289582332|ref|YP_003480798.1| - 4.9e-06 26.5 0.0 0.00029 20.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|289582332|ref|YP_003480798.1| - 9.3e-06 26.1 0.1 2.1e-05 25.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|289582332|ref|YP_003480798.1| - 3.2e-05 23.6 0.1 6.6e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289582332|ref|YP_003480798.1| - 4.5e-05 24.1 0.0 7.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289582332|ref|YP_003480798.1| - 8.8e-05 22.8 0.0 0.00042 20.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|289582332|ref|YP_003480798.1| - 0.00025 19.9 0.0 0.27 9.8 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|289582332|ref|YP_003480798.1| - 0.00027 20.7 0.7 0.00076 19.2 0.7 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289582332|ref|YP_003480798.1| - 0.00032 20.2 0.0 0.005 16.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|289582332|ref|YP_003480798.1| - 0.00084 19.6 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|289582332|ref|YP_003480798.1| - 0.005 17.0 0.0 0.0061 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain Trypan_PARP PF05887.11 gi|289582332|ref|YP_003480798.1| - 0.0057 16.6 4.7 0.01 15.8 4.7 1.4 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) RsgA_GTPase PF03193.16 gi|289582332|ref|YP_003480798.1| - 0.0059 16.5 0.0 0.0093 15.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|289582332|ref|YP_003480798.1| - 0.012 16.1 0.0 0.03 14.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|289582332|ref|YP_003480798.1| - 0.013 15.6 0.0 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|289582332|ref|YP_003480798.1| - 0.014 15.0 0.1 0.022 14.4 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|289582332|ref|YP_003480798.1| - 0.032 14.8 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|289582332|ref|YP_003480798.1| - 0.041 13.5 0.2 0.11 12.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|289582332|ref|YP_003480798.1| - 0.044 13.4 0.7 0.091 12.3 0.3 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|289582332|ref|YP_003480798.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|289582332|ref|YP_003480798.1| - 0.095 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|289582332|ref|YP_003480798.1| - 0.095 12.7 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|289582332|ref|YP_003480798.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 gi|289582332|ref|YP_003480798.1| - 0.15 10.8 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein PduV-EutP PF10662.9 gi|289582332|ref|YP_003480798.1| - 0.21 11.4 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Serglycin PF04360.12 gi|289582332|ref|YP_003480798.1| - 0.48 10.4 2.9 0.67 9.9 2.9 1.3 1 0 0 1 1 1 0 Serglycin ABC2_membrane_2 PF12679.7 gi|289582333|ref|YP_003480799.1| - 3.7e-08 33.0 32.1 1.6e-07 30.9 26.2 2.1 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289582333|ref|YP_003480799.1| - 0.00016 21.3 5.3 0.00029 20.5 5.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289582333|ref|YP_003480799.1| - 0.084 12.0 16.3 0.15 11.1 16.3 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein NosL PF05573.12 gi|289582334|ref|YP_003480800.1| - 2.3e-43 147.7 0.4 2.9e-43 147.4 0.4 1.1 1 0 0 1 1 1 1 NosL NfeD PF01957.18 gi|289582335|ref|YP_003480801.1| - 0.16 12.3 0.7 0.37 11.2 0.7 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding EamA PF00892.20 gi|289582336|ref|YP_003480802.1| - 1.7e-25 89.8 36.3 3.7e-15 56.3 12.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|289582336|ref|YP_003480802.1| - 2.1e-06 27.1 20.3 0.00073 18.7 4.1 2.7 3 1 0 3 3 3 2 Magnesium transporter NIPA PUNUT PF16913.5 gi|289582336|ref|YP_003480802.1| - 3.5e-06 26.5 2.4 3.5e-06 26.5 2.4 2.3 2 0 0 2 2 2 1 Purine nucleobase transmembrane transport Nuc_sug_transp PF04142.15 gi|289582336|ref|YP_003480802.1| - 0.0073 15.5 0.2 0.0073 15.5 0.2 1.9 2 0 0 2 2 2 1 Nucleotide-sugar transporter DUF5337 PF17272.2 gi|289582336|ref|YP_003480802.1| - 0.049 13.5 0.2 0.049 13.5 0.2 3.4 4 1 0 4 4 4 0 Family of unknown function (DUF5337) TPT PF03151.16 gi|289582336|ref|YP_003480802.1| - 0.22 10.8 17.6 0.63 9.3 5.0 2.3 2 0 0 2 2 2 0 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|289582336|ref|YP_003480802.1| - 0.59 10.2 9.2 0.2 11.7 1.3 2.5 2 0 0 2 2 2 0 Putative transmembrane family 234 DUF5591 PF17884.1 gi|289582337|ref|YP_003480803.1| - 1.3e-60 203.7 0.6 1.9e-60 203.2 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|289582337|ref|YP_003480803.1| - 4.9e-23 81.1 0.0 1.6e-22 79.4 0.0 1.9 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|289582337|ref|YP_003480803.1| - 1.5e-12 47.3 1.4 7.6e-12 45.0 0.8 2.2 2 0 0 2 2 2 1 PUA domain TGT PF01702.18 gi|289582337|ref|YP_003480803.1| - 1.9e-11 43.7 0.0 4.2e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase TAT_signal PF10518.9 gi|289582338|ref|YP_003480804.1| - 0.088 12.7 0.6 0.15 11.9 0.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NTP_transf_2 PF01909.23 gi|289582340|ref|YP_003480806.1| - 1.1e-11 44.9 0.2 1.7e-11 44.3 0.2 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|289582340|ref|YP_003480806.1| - 8e-08 32.3 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|289582340|ref|YP_003480806.1| - 0.011 15.9 0.1 0.02 15.1 0.1 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm MarR_2 PF12802.7 gi|289582340|ref|YP_003480806.1| - 0.02 14.8 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|289582340|ref|YP_003480806.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PQQ_2 PF13360.6 gi|289582341|ref|YP_003480807.1| - 3.8e-20 72.5 11.9 2.1e-06 27.5 3.3 3.4 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289582341|ref|YP_003480807.1| - 1.2e-15 57.5 28.1 8.2e-06 26.1 0.2 7.9 6 2 1 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|289582341|ref|YP_003480807.1| - 2.5e-06 27.1 10.2 0.1 12.6 0.1 5.9 6 1 1 7 7 7 3 PQQ enzyme repeat DUF308 PF03729.13 gi|289582342|ref|YP_003480808.1| - 1.8e-17 63.4 37.4 1.6e-11 44.3 17.8 3.2 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) GTA_holin_3TM PF11351.8 gi|289582342|ref|YP_003480808.1| - 0.0019 18.7 3.1 1.3 9.6 0.1 2.4 1 1 1 2 2 2 2 Holin of 3TMs, for gene-transfer release DUF4538 PF15061.6 gi|289582342|ref|YP_003480808.1| - 0.018 14.8 0.5 0.018 14.8 0.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) DUF883 PF05957.13 gi|289582342|ref|YP_003480808.1| - 0.96 10.1 0.1 0.96 10.1 0.1 2.8 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Bac_luciferase PF00296.20 gi|289582343|ref|YP_003480809.1| - 1.3e-39 136.5 2.4 1.5e-39 136.3 2.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase BAT PF15915.5 gi|289582344|ref|YP_003480810.1| - 2.9e-35 121.4 6.1 2.9e-35 121.4 6.1 2.7 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|289582344|ref|YP_003480810.1| - 3.1e-20 71.7 0.0 6.6e-20 70.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|289582344|ref|YP_003480810.1| - 5.2e-20 72.2 0.2 1.5e-19 70.6 0.2 1.9 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|289582344|ref|YP_003480810.1| - 1.8e-17 63.5 0.1 2.5e-16 59.8 0.1 2.6 2 1 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|289582344|ref|YP_003480810.1| - 4.3e-09 37.1 0.0 1.4e-08 35.5 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|289582344|ref|YP_003480810.1| - 1.8e-05 25.1 0.0 5.2e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.12 gi|289582344|ref|YP_003480810.1| - 0.0018 17.9 0.1 0.036 13.7 0.0 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|289582344|ref|YP_003480810.1| - 0.01 15.4 0.0 0.029 13.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Serglycin PF04360.12 gi|289582344|ref|YP_003480810.1| - 0.2 11.6 1.1 2.1 8.3 0.9 2.2 2 0 0 2 2 2 0 Serglycin Response_reg PF00072.24 gi|289582345|ref|YP_003480811.1| - 2.8e-22 79.0 0.0 3.4e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Bac_DnaA PF00308.18 gi|289582346|ref|YP_003480812.1| - 2.5e-11 43.8 0.0 4.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_22 PF13401.6 gi|289582346|ref|YP_003480812.1| - 2.5e-10 40.8 0.1 3.1e-09 37.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|289582346|ref|YP_003480812.1| - 6e-06 26.3 0.1 4.5e-05 23.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|289582346|ref|YP_003480812.1| - 7.2e-06 26.5 6.7 2.5e-05 24.7 0.7 3.1 2 2 0 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|289582346|ref|YP_003480812.1| - 2.2e-05 24.7 1.5 5.5e-05 23.4 0.5 2.2 3 1 0 3 3 2 1 AAA C-terminal domain AAA PF00004.29 gi|289582346|ref|YP_003480812.1| - 6.2e-05 23.4 0.0 0.00051 20.5 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|289582346|ref|YP_003480812.1| - 6.4e-05 23.0 0.0 0.00013 22.0 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|289582346|ref|YP_003480812.1| - 0.001 18.5 0.0 0.0023 17.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|289582346|ref|YP_003480812.1| - 0.0079 16.1 0.0 0.022 14.7 0.0 1.7 2 0 0 2 2 2 1 NACHT domain DUF4194 PF13835.6 gi|289582346|ref|YP_003480812.1| - 0.03 14.1 0.7 0.093 12.5 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4194) AAA_7 PF12775.7 gi|289582346|ref|YP_003480812.1| - 0.032 13.8 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|289582346|ref|YP_003480812.1| - 0.032 14.2 0.0 0.19 11.7 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|289582346|ref|YP_003480812.1| - 0.048 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.6 gi|289582346|ref|YP_003480812.1| - 0.087 12.9 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|289582346|ref|YP_003480812.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Cdc6_C PF09079.11 gi|289582346|ref|YP_003480812.1| - 0.14 12.1 2.8 0.16 12.0 0.2 2.4 3 0 0 3 3 3 0 CDC6, C terminal winged helix domain YkyA PF10368.9 gi|289582347|ref|YP_003480813.1| - 0.034 13.8 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF3837 PF12939.7 gi|289582347|ref|YP_003480813.1| - 0.057 13.8 0.0 0.083 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) DUF2072 PF09845.9 gi|289582348|ref|YP_003480814.1| - 0.027 14.7 0.1 0.033 14.4 0.1 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-CSL PF05207.13 gi|289582348|ref|YP_003480814.1| - 0.053 13.3 0.4 0.74 9.6 0.0 2.1 2 0 0 2 2 2 0 CSL zinc finger Methyltrn_RNA_2 PF04013.12 gi|289582349|ref|YP_003480815.1| - 5.5e-50 169.8 0.0 6.1e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase YdjM PF04307.14 gi|289582350|ref|YP_003480816.1| - 1.9e-12 46.8 5.2 2.4e-12 46.5 5.2 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|289582350|ref|YP_003480816.1| - 0.056 13.4 0.0 0.093 12.7 0.0 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C DZR PF12773.7 gi|289582351|ref|YP_003480817.1| - 0.0031 17.5 2.1 0.034 14.2 0.5 2.1 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|289582351|ref|YP_003480817.1| - 0.41 10.1 7.6 58 3.3 7.6 2.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|289582351|ref|YP_003480817.1| - 0.78 9.5 5.9 1.9 8.2 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|289582351|ref|YP_003480817.1| - 0.87 9.6 6.2 3.2 7.8 6.2 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF3188 PF11384.8 gi|289582352|ref|YP_003480818.1| - 0.018 14.8 0.8 4.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DER1 PF04511.15 gi|289582352|ref|YP_003480818.1| - 0.034 14.1 0.8 0.038 13.9 0.8 1.0 1 0 0 1 1 1 0 Der1-like family Trypsin_2 PF13365.6 gi|289582354|ref|YP_003480820.1| - 1.5e-30 107.1 4.4 2.6e-30 106.3 4.4 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|289582354|ref|YP_003480820.1| - 1.8e-12 47.5 0.9 5.7e-12 45.9 0.9 1.7 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|289582354|ref|YP_003480820.1| - 4.9e-10 39.6 0.1 1.2e-09 38.4 0.0 1.7 2 0 0 2 2 2 1 PDZ domain TAT_signal PF10518.9 gi|289582354|ref|YP_003480820.1| - 0.0017 18.1 1.1 0.0036 17.1 1.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|289582354|ref|YP_003480820.1| - 0.012 14.9 0.8 0.035 13.5 0.8 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PDZ PF00595.24 gi|289582354|ref|YP_003480820.1| - 0.021 15.2 0.0 5.4 7.4 0.0 2.5 2 0 0 2 2 2 0 PDZ domain PDZ_6 PF17820.1 gi|289582354|ref|YP_003480820.1| - 0.029 14.2 0.0 0.091 12.6 0.0 1.9 1 0 0 1 1 1 0 PDZ domain Tricorn_PDZ PF14685.6 gi|289582354|ref|YP_003480820.1| - 0.056 13.4 0.0 0.46 10.5 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain Peptidase_S32 PF05579.13 gi|289582354|ref|YP_003480820.1| - 0.1 11.8 1.3 1.7 7.7 0.4 2.1 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Pico_P2A PF00947.19 gi|289582354|ref|YP_003480820.1| - 0.15 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Picornavirus core protein 2A THUMP PF02926.17 gi|289582355|ref|YP_003480821.1| - 7.9e-08 32.5 0.0 5.6e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|289582355|ref|YP_003480821.1| - 0.0003 21.1 4.4 0.0015 18.9 1.3 2.8 3 0 0 3 3 3 1 DnaJ central domain Anti-TRAP PF15777.5 gi|289582355|ref|YP_003480821.1| - 3.3 7.8 11.2 2 8.5 4.7 3.0 2 1 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein RNase_HII PF01351.18 gi|289582357|ref|YP_003480823.1| - 5.9e-41 140.5 0.0 6.7e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Na_Ca_ex PF01699.24 gi|289582358|ref|YP_003480824.1| - 7.7e-37 126.6 38.2 9e-19 67.9 11.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SafA PF17073.5 gi|289582358|ref|YP_003480824.1| - 0.32 11.0 1.6 1 9.4 0.0 2.6 3 0 0 3 3 3 0 Two-component-system connector protein SecD_SecF PF02355.16 gi|289582359|ref|YP_003480825.1| - 1.2e-14 54.1 3.8 1.2e-14 54.1 3.8 1.5 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|289582359|ref|YP_003480825.1| - 0.0024 16.9 12.6 0.006 15.6 12.6 1.6 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.16 gi|289582360|ref|YP_003480826.1| - 1.2e-28 99.7 8.3 1.2e-28 99.7 8.3 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|289582360|ref|YP_003480826.1| - 6.8e-05 22.2 0.2 0.00018 20.9 0.2 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|289582360|ref|YP_003480826.1| - 0.016 13.4 9.2 0.02 13.0 9.2 1.1 1 0 0 1 1 1 0 Patched family PGI PF00342.19 gi|289582363|ref|YP_003480829.1| - 4.1e-31 108.1 0.0 1.2e-26 93.4 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase CPBP PF02517.16 gi|289582364|ref|YP_003480830.1| - 2.9e-13 50.0 1.6 2.9e-13 50.0 1.6 3.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease MRVI1 PF05781.12 gi|289582364|ref|YP_003480830.1| - 0.34 9.6 0.0 0.47 9.1 0.0 1.1 1 0 0 1 1 1 0 MRVI1 protein PIN_6 PF17146.4 gi|289582365|ref|YP_003480831.1| - 2.9e-13 50.1 0.1 8.2e-13 48.7 0.0 1.7 2 0 0 2 2 2 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|289582365|ref|YP_003480831.1| - 0.00018 21.5 2.7 0.00044 20.3 2.7 1.6 1 0 0 1 1 1 1 Zinc ribbon domain PIN_5 PF08745.11 gi|289582365|ref|YP_003480831.1| - 0.00026 20.5 1.0 0.00033 20.2 0.4 1.5 1 1 1 2 2 2 1 PINc domain ribonuclease zinc-ribbons_6 PF07191.12 gi|289582365|ref|YP_003480831.1| - 0.0043 17.0 0.7 0.0067 16.4 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|289582365|ref|YP_003480831.1| - 0.0043 17.0 0.2 0.0065 16.5 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|289582365|ref|YP_003480831.1| - 0.0043 17.1 1.6 0.0064 16.5 1.6 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|289582365|ref|YP_003480831.1| - 0.0073 17.0 0.2 0.01 16.5 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon family zf-C3HC4_2 PF13923.6 gi|289582365|ref|YP_003480831.1| - 0.009 15.8 2.1 0.016 15.1 2.1 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 gi|289582365|ref|YP_003480831.1| - 0.015 15.1 1.3 0.023 14.5 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.16 gi|289582365|ref|YP_003480831.1| - 0.016 15.2 1.3 0.24 11.5 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_5 PF14634.6 gi|289582365|ref|YP_003480831.1| - 0.026 14.5 1.2 0.04 13.9 1.2 1.3 1 0 0 1 1 1 0 zinc-RING finger domain NOB1_Zn_bind PF08772.11 gi|289582365|ref|YP_003480831.1| - 0.042 14.0 0.6 0.078 13.1 0.6 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_4 PF14447.6 gi|289582365|ref|YP_003480831.1| - 0.043 13.7 0.3 0.13 12.2 0.7 1.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF4411 PF14367.6 gi|289582365|ref|YP_003480831.1| - 0.047 13.6 0.2 0.63 9.9 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4411) zf-P11 PF03854.14 gi|289582365|ref|YP_003480831.1| - 0.068 12.8 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF2710 PF10921.8 gi|289582365|ref|YP_003480831.1| - 0.073 13.5 0.5 0.22 11.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) Rad50_zn_hook PF04423.14 gi|289582365|ref|YP_003480831.1| - 0.085 12.7 2.6 0.85 9.5 1.4 2.5 1 1 1 2 2 2 0 Rad50 zinc hook motif Ribosomal_L37e PF01907.19 gi|289582365|ref|YP_003480831.1| - 0.13 12.5 1.9 0.22 11.7 1.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-C2H2 PF00096.26 gi|289582365|ref|YP_003480831.1| - 0.32 11.5 1.9 3.3 8.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|289582365|ref|YP_003480831.1| - 0.48 10.4 8.4 0.35 10.8 0.9 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type Zn_ribbon_SprT PF17283.2 gi|289582365|ref|YP_003480831.1| - 1.4 8.9 5.6 15 5.6 5.6 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain PRC PF05239.16 gi|289582366|ref|YP_003480832.1| - 6e-10 39.1 0.1 8.8e-10 38.5 0.1 1.3 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.27 gi|289582367|ref|YP_003480833.1| - 3.4e-31 108.3 0.1 6.5e-30 104.1 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|289582367|ref|YP_003480833.1| - 2.1e-24 85.2 1.2 3.5e-24 84.5 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|289582367|ref|YP_003480833.1| - 2.4e-23 82.3 1.0 9.1e-23 80.4 0.5 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|289582367|ref|YP_003480833.1| - 2.4e-11 43.8 11.3 4.2e-08 33.4 2.5 3.4 2 1 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|289582367|ref|YP_003480833.1| - 1.9e-08 34.3 0.0 6.8e-08 32.6 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|289582367|ref|YP_003480833.1| - 0.0016 18.5 0.2 0.22 11.6 0.0 2.7 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|289582367|ref|YP_003480833.1| - 0.028 14.2 0.0 0.075 12.8 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|289582367|ref|YP_003480833.1| - 0.094 12.9 0.0 0.43 10.8 0.0 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SpoVAC_SpoVAEB PF03862.13 gi|289582368|ref|YP_003480834.1| - 0.13 12.5 0.2 0.13 12.5 0.2 2.2 2 0 0 2 2 2 0 SpoVAC/SpoVAEB sporulation membrane protein Trypan_PARP PF05887.11 gi|289582368|ref|YP_003480834.1| - 0.44 10.5 7.0 0.8 9.7 7.0 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) CTP_synth_N PF06418.14 gi|289582369|ref|YP_003480835.1| - 1.8e-125 417.6 0.2 2.3e-125 417.3 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|289582369|ref|YP_003480835.1| - 2.9e-53 180.5 0.0 5e-53 179.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289582369|ref|YP_003480835.1| - 6.9e-07 29.2 0.0 1.3e-05 25.1 0.0 2.2 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|289582369|ref|YP_003480835.1| - 0.0013 18.8 0.0 0.0028 17.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|289582369|ref|YP_003480835.1| - 0.028 14.0 0.1 0.22 11.1 0.1 2.0 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|289582369|ref|YP_003480835.1| - 0.093 12.5 0.1 0.72 9.6 0.0 2.3 2 1 1 3 3 3 0 DJ-1/PfpI family GMP_synt_C PF00958.22 gi|289582370|ref|YP_003480836.1| - 1.6e-28 98.6 0.1 3.3e-28 97.6 0.1 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|289582370|ref|YP_003480836.1| - 6.5e-08 32.0 0.0 0.00015 20.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|289582370|ref|YP_003480836.1| - 4.1e-05 22.5 0.0 0.001 17.9 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.19 gi|289582370|ref|YP_003480836.1| - 0.016 14.5 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|289582370|ref|YP_003480836.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|289582370|ref|YP_003480836.1| - 0.019 14.5 0.0 0.045 13.3 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|289582370|ref|YP_003480836.1| - 0.042 13.9 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|289582370|ref|YP_003480836.1| - 0.16 11.6 0.0 0.35 10.4 0.0 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) 5-FTHF_cyc-lig PF01812.20 gi|289582372|ref|YP_003480838.1| - 6.8e-24 84.7 0.0 8.7e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.24 gi|289582373|ref|YP_003480839.1| - 5.6e-23 81.2 0.7 9.1e-23 80.5 0.7 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.26 gi|289582374|ref|YP_003480840.1| - 8.7e-34 116.3 0.3 1.9e-33 115.2 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|289582374|ref|YP_003480840.1| - 2.8e-26 91.5 0.2 9.3e-26 89.9 0.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|289582374|ref|YP_003480840.1| - 5.6e-21 76.0 0.0 9.6e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|289582374|ref|YP_003480840.1| - 0.004 16.5 1.0 0.006 15.9 0.4 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|289582374|ref|YP_003480840.1| - 0.0085 16.5 0.1 0.019 15.4 0.1 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.25 gi|289582374|ref|YP_003480840.1| - 0.026 14.0 0.2 0.047 13.1 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|289582374|ref|YP_003480840.1| - 0.042 14.0 0.1 0.12 12.5 0.1 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.8 gi|289582374|ref|YP_003480840.1| - 0.13 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.17 gi|289582374|ref|YP_003480840.1| - 0.17 11.0 0.1 0.52 9.4 0.1 1.7 1 1 1 2 2 2 0 RmlD substrate binding domain DUF2207 PF09972.9 gi|289582375|ref|YP_003480841.1| - 0.06 12.1 0.0 0.061 12.1 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tropomyosin PF00261.20 gi|289582376|ref|YP_003480842.1| - 0.077 12.4 0.2 0.097 12.0 0.2 1.1 1 0 0 1 1 1 0 Tropomyosin DUF4598 PF15370.6 gi|289582377|ref|YP_003480843.1| - 0.12 12.9 0.0 0.13 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4598) NUDIX PF00293.28 gi|289582378|ref|YP_003480844.1| - 2.3e-14 53.6 1.3 2.3e-14 53.6 1.3 1.4 2 0 0 2 2 2 1 NUDIX domain NUDIX_4 PF14815.6 gi|289582378|ref|YP_003480844.1| - 0.0055 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain PHP_C PF13263.6 gi|289582379|ref|YP_003480845.1| - 7.2e-18 64.1 0.1 2.7e-17 62.3 0.0 2.0 2 0 0 2 2 2 1 PHP-associated DUF2749 PF10907.8 gi|289582379|ref|YP_003480845.1| - 2.2 8.5 6.5 5.8 7.2 6.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Acetyltransf_6 PF13480.7 gi|289582380|ref|YP_003480846.1| - 4.7e-15 56.0 5.5 8.6e-15 55.1 5.5 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|289582380|ref|YP_003480846.1| - 3.7e-11 42.8 0.0 5.5e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition FemAB PF02388.16 gi|289582380|ref|YP_003480846.1| - 6.5e-11 41.7 2.5 1e-08 34.5 1.5 2.1 2 0 0 2 2 2 2 FemAB family HTH_AsnC-type PF13404.6 gi|289582381|ref|YP_003480847.1| - 1.6e-18 66.3 0.4 1e-17 63.7 0.2 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|289582381|ref|YP_003480847.1| - 2.2e-15 55.9 0.1 7.5e-15 54.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|289582381|ref|YP_003480847.1| - 4.1e-09 36.3 0.6 8.6e-09 35.2 0.6 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sigma70_r4_2 PF08281.12 gi|289582381|ref|YP_003480847.1| - 9.6e-05 22.0 0.0 0.00021 20.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|289582381|ref|YP_003480847.1| - 0.00075 19.0 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|289582381|ref|YP_003480847.1| - 0.0015 18.0 0.1 0.028 13.9 0.0 2.4 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|289582381|ref|YP_003480847.1| - 0.0031 17.5 0.0 0.0084 16.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|289582381|ref|YP_003480847.1| - 0.01 15.2 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 gi|289582381|ref|YP_003480847.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|289582381|ref|YP_003480847.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|289582381|ref|YP_003480847.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF746 PF05344.11 gi|289582381|ref|YP_003480847.1| - 0.018 14.8 0.1 0.23 11.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HrcA_DNA-bdg PF03444.15 gi|289582381|ref|YP_003480847.1| - 0.024 14.3 0.1 0.054 13.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.22 gi|289582381|ref|YP_003480847.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family GYD PF08734.11 gi|289582381|ref|YP_003480847.1| - 0.042 13.8 1.3 0.15 12.1 0.3 2.1 2 1 0 2 2 2 0 GYD domain HTH_Mga PF08280.11 gi|289582381|ref|YP_003480847.1| - 0.044 13.8 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|289582381|ref|YP_003480847.1| - 0.05 13.4 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain NapD PF03927.13 gi|289582381|ref|YP_003480847.1| - 0.054 13.6 0.8 0.099 12.7 0.8 1.4 1 0 0 1 1 1 0 NapD protein HTH_28 PF13518.6 gi|289582381|ref|YP_003480847.1| - 0.11 12.7 0.0 0.45 10.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|289582381|ref|YP_003480847.1| - 0.11 12.4 0.1 0.38 10.7 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289582381|ref|YP_003480847.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family CPSase_sm_chain PF00988.22 gi|289582382|ref|YP_003480848.1| - 2.6e-36 124.3 0.1 2.7e-35 121.0 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|289582382|ref|YP_003480848.1| - 8.9e-35 120.2 0.0 1.3e-34 119.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289582382|ref|YP_003480848.1| - 2.4e-06 27.4 0.1 0.0011 18.8 0.1 2.2 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|289582382|ref|YP_003480848.1| - 0.00015 21.6 0.1 0.00027 20.8 0.1 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family PQQ_3 PF13570.6 gi|289582382|ref|YP_003480848.1| - 6.3 7.4 6.0 2.3 8.8 0.1 3.1 3 0 0 3 3 3 0 PQQ-like domain DUF3244 PF11589.8 gi|289582383|ref|YP_003480849.1| - 0.028 14.5 0.3 0.053 13.6 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3244) FixG_C PF11614.8 gi|289582383|ref|YP_003480849.1| - 0.049 13.9 0.1 0.13 12.5 0.1 1.7 1 1 1 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase FlaG PF03646.15 gi|289582384|ref|YP_003480850.1| - 0.45 10.7 2.9 40 4.5 0.5 3.5 4 0 0 4 4 4 0 FlaG protein CK1gamma_C PF12605.8 gi|289582384|ref|YP_003480850.1| - 0.5 11.6 2.5 6.5 8.0 0.3 3.2 4 0 0 4 4 4 0 Casein kinase 1 gamma C terminal DUF357 PF04010.13 gi|289582384|ref|YP_003480850.1| - 4.6 7.4 10.2 0.6 10.2 1.4 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF357) SIMPL PF04402.14 gi|289582385|ref|YP_003480851.1| - 3.8e-32 112.4 10.8 4.7e-32 112.1 10.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TAT_signal PF10518.9 gi|289582385|ref|YP_003480851.1| - 0.0021 17.8 1.9 0.0048 16.7 1.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|289582385|ref|YP_003480851.1| - 0.012 14.9 1.1 0.027 13.8 1.1 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CytB6-F_Fe-S PF08802.10 gi|289582385|ref|YP_003480851.1| - 0.014 15.4 0.2 0.014 15.4 0.2 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Usp PF00582.26 gi|289582386|ref|YP_003480852.1| - 1.1e-36 126.4 16.0 5.7e-23 82.0 2.8 2.9 2 1 0 2 2 2 2 Universal stress protein family AICARFT_IMPCHas PF01808.18 gi|289582387|ref|YP_003480853.1| - 3.3e-85 286.1 0.0 4.4e-85 285.7 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|289582387|ref|YP_003480853.1| - 1e-35 123.1 0.0 2e-34 118.9 0.0 2.3 1 1 0 1 1 1 1 Formyl transferase Rpp20 PF12328.8 gi|289582387|ref|YP_003480853.1| - 0.13 12.3 0.1 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 Rpp20 subunit of nuclear RNase MRP and P Lyase_1 PF00206.20 gi|289582388|ref|YP_003480854.1| - 5.4e-49 167.3 0.0 8.1e-49 166.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|289582388|ref|YP_003480854.1| - 9.7e-42 141.7 0.0 1.9e-41 140.8 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ScsC_N PF18312.1 gi|289582388|ref|YP_003480854.1| - 0.13 12.1 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain Peptidase_M20 PF01546.28 gi|289582390|ref|YP_003480856.1| - 1.9e-22 80.0 0.5 2.9e-22 79.4 0.5 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289582390|ref|YP_003480856.1| - 1.9e-17 63.2 0.0 3.8e-17 62.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain ORF_12_N PF18042.1 gi|289582390|ref|YP_003480856.1| - 0.12 12.8 0.1 0.47 10.9 0.0 2.1 2 0 0 2 2 2 0 ORF 12 gene product N-terminal P53_TAD PF08563.11 gi|289582391|ref|YP_003480857.1| - 8.9 5.9 7.2 0.49 9.9 1.0 2.2 2 0 0 2 2 2 0 P53 transactivation motif Orn_Arg_deC_N PF02784.16 gi|289582392|ref|YP_003480858.1| - 7.3e-41 140.2 0.0 9e-41 139.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|289582392|ref|YP_003480858.1| - 1.3e-20 73.5 0.0 1.4e-20 73.4 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Aldo_ket_red PF00248.21 gi|289582393|ref|YP_003480859.1| - 3.4e-54 184.0 0.0 2.9e-52 177.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF3105 PF11303.8 gi|289582393|ref|YP_003480859.1| - 0.071 13.3 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3105) THDPS_N_2 PF14805.6 gi|289582394|ref|YP_003480860.1| - 2.8e-24 85.1 1.8 4.4e-24 84.5 1.8 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|289582394|ref|YP_003480860.1| - 2.2e-12 46.2 6.8 9.8e-05 21.9 1.4 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289582394|ref|YP_003480860.1| - 1.5e-06 27.8 12.6 1.9e-05 24.3 0.9 3.6 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|289582395|ref|YP_003480861.1| - 2.7e-36 124.2 0.1 3.9e-36 123.7 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|289582395|ref|YP_003480861.1| - 1.5e-23 83.3 0.1 7.1e-23 81.1 0.1 2.0 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 gi|289582395|ref|YP_003480861.1| - 0.00065 20.3 0.2 0.0048 17.5 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain Epimerase PF01370.21 gi|289582395|ref|YP_003480861.1| - 0.0058 16.1 0.1 0.022 14.2 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|289582395|ref|YP_003480861.1| - 0.009 16.8 0.0 0.017 15.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NmrA PF05368.13 gi|289582395|ref|YP_003480861.1| - 0.0096 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|289582395|ref|YP_003480861.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Semialdhyde_dh PF01118.24 gi|289582395|ref|YP_003480861.1| - 0.022 15.2 0.0 0.04 14.4 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|289582395|ref|YP_003480861.1| - 0.043 14.1 0.5 0.16 12.3 0.4 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FleQ PF06490.11 gi|289582395|ref|YP_003480861.1| - 0.19 12.1 0.0 0.28 11.6 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ DHDPS PF00701.22 gi|289582396|ref|YP_003480862.1| - 3e-92 308.4 0.0 3.4e-92 308.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NMO PF03060.15 gi|289582396|ref|YP_003480862.1| - 0.016 14.6 3.0 0.047 13.1 0.2 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase ThiG PF05690.14 gi|289582396|ref|YP_003480862.1| - 0.035 13.4 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Peptidase_M48 PF01435.18 gi|289582397|ref|YP_003480863.1| - 1.1e-35 123.2 1.6 1.3e-35 123.0 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289582397|ref|YP_003480863.1| - 7.8e-06 25.3 0.0 2e-05 23.9 0.0 1.6 1 1 1 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289582397|ref|YP_003480863.1| - 0.018 14.9 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 SprT-like family FUSC_2 PF13515.6 gi|289582397|ref|YP_003480863.1| - 0.023 14.8 0.3 0.023 14.8 0.3 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein-like DUF2207 PF09972.9 gi|289582397|ref|YP_003480863.1| - 0.068 11.9 1.2 0.74 8.5 0.9 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF3169 PF11368.8 gi|289582397|ref|YP_003480863.1| - 7.1 6.1 8.7 5.3 6.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) NYN PF01936.18 gi|289582398|ref|YP_003480864.1| - 2.3e-38 132.0 0.6 2.7e-38 131.8 0.6 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.19 gi|289582398|ref|YP_003480864.1| - 0.0058 15.1 0.0 0.008 14.7 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like DUF2529 PF10740.9 gi|289582398|ref|YP_003480864.1| - 0.073 12.7 0.1 1.8 8.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) CD20 PF04103.15 gi|289582399|ref|YP_003480865.1| - 0.03 14.4 2.2 0.034 14.2 2.2 1.1 1 0 0 1 1 1 0 CD20-like family DUF4781 PF16013.5 gi|289582399|ref|YP_003480865.1| - 1.9 7.2 4.2 2 7.2 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) TGT_C2 PF14810.6 gi|289582400|ref|YP_003480866.1| - 4.5e-23 81.2 2.0 1.2e-22 79.8 2.0 1.8 1 1 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|289582400|ref|YP_003480866.1| - 1.1e-17 63.8 0.3 1.7e-17 63.1 0.3 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|289582400|ref|YP_003480866.1| - 0.021 15.0 0.0 0.038 14.3 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain Band_7 PF01145.25 gi|289582401|ref|YP_003480867.1| - 0.00011 22.2 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family NAC PF01849.18 gi|289582402|ref|YP_003480868.1| - 2e-15 56.5 0.3 2.8e-15 56.0 0.3 1.2 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|289582402|ref|YP_003480868.1| - 0.00018 21.2 0.8 0.00037 20.2 0.8 1.5 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.16 gi|289582402|ref|YP_003480868.1| - 0.06 13.1 0.9 0.26 11.0 0.2 2.3 2 0 0 2 2 2 0 CUE domain LptC PF06835.13 gi|289582402|ref|YP_003480868.1| - 0.094 12.3 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related GCD14 PF08704.10 gi|289582403|ref|YP_003480869.1| - 2.5e-15 56.8 0.0 5.9e-13 49.1 0.0 2.3 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 gi|289582403|ref|YP_003480869.1| - 2.3e-08 33.8 0.1 3.8e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|289582403|ref|YP_003480869.1| - 3.7e-08 33.3 0.0 5.5e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|289582403|ref|YP_003480869.1| - 2.1e-07 30.9 0.1 2.9e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|289582403|ref|YP_003480869.1| - 6.6e-07 29.9 0.1 1.5e-06 28.8 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|289582403|ref|YP_003480869.1| - 1.1e-06 28.3 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|289582403|ref|YP_003480869.1| - 3.7e-05 24.3 0.1 7.2e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|289582403|ref|YP_003480869.1| - 4.6e-05 24.4 0.1 0.00011 23.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|289582403|ref|YP_003480869.1| - 0.00018 20.7 0.0 0.00026 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|289582403|ref|YP_003480869.1| - 0.00051 19.9 0.0 0.0015 18.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|289582403|ref|YP_003480869.1| - 0.0012 18.5 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|289582403|ref|YP_003480869.1| - 0.002 17.7 0.0 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.17 gi|289582403|ref|YP_003480869.1| - 0.0057 15.8 0.0 0.0076 15.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|289582403|ref|YP_003480869.1| - 0.016 14.5 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|289582403|ref|YP_003480869.1| - 0.03 14.3 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|289582403|ref|YP_003480869.1| - 0.035 13.9 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|289582403|ref|YP_003480869.1| - 0.067 13.9 0.0 0.16 12.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Mur_ligase PF01225.25 gi|289582403|ref|YP_003480869.1| - 0.13 12.6 0.1 0.64 10.4 0.0 2.0 2 0 0 2 2 2 0 Mur ligase family, catalytic domain Methyltransf_16 PF10294.9 gi|289582403|ref|YP_003480869.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase NESP55 PF06390.12 gi|289582403|ref|YP_003480869.1| - 0.16 11.5 11.6 0.3 10.7 11.6 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) DUF726 PF05277.12 gi|289582403|ref|YP_003480869.1| - 0.26 10.2 0.0 0.39 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Trypan_PARP PF05887.11 gi|289582403|ref|YP_003480869.1| - 3.7 7.5 13.4 7 6.6 12.7 1.7 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) TFIIS_C PF01096.18 gi|289582404|ref|YP_003480870.1| - 4.2e-19 68.1 4.5 4.2e-19 68.1 4.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|289582404|ref|YP_003480870.1| - 7.2e-08 32.2 1.3 7.2e-08 32.2 1.3 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|289582404|ref|YP_003480870.1| - 6e-06 26.1 6.1 0.0017 18.3 1.0 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|289582404|ref|YP_003480870.1| - 1.7e-05 24.3 5.6 0.0012 18.3 0.1 3.5 3 1 0 3 3 3 1 TFIIB zinc-binding DZR PF12773.7 gi|289582404|ref|YP_003480870.1| - 0.00011 22.2 8.8 0.013 15.5 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|289582404|ref|YP_003480870.1| - 0.00029 20.7 1.7 0.00029 20.7 1.7 3.2 3 0 0 3 3 3 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|289582404|ref|YP_003480870.1| - 0.00037 20.4 10.5 0.059 13.3 0.9 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|289582404|ref|YP_003480870.1| - 0.00046 19.5 11.2 0.12 11.8 0.1 3.9 3 1 0 3 3 3 1 zinc-ribbon domain FdhE PF04216.12 gi|289582404|ref|YP_003480870.1| - 0.0018 18.2 0.3 0.0018 18.2 0.3 1.8 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation Ribosomal_L37ae PF01780.19 gi|289582404|ref|YP_003480870.1| - 0.028 14.5 5.4 0.046 13.8 0.2 2.6 1 1 0 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_2 PF13240.6 gi|289582404|ref|YP_003480870.1| - 0.04 13.6 12.9 0.21 11.4 0.2 3.9 3 1 0 4 4 4 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|289582404|ref|YP_003480870.1| - 0.048 13.4 14.3 2.4 8.0 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Lar_restr_allev PF14354.6 gi|289582404|ref|YP_003480870.1| - 0.1 13.0 9.3 0.99 9.8 0.8 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF3268 PF11672.8 gi|289582404|ref|YP_003480870.1| - 0.14 12.5 0.6 0.14 12.5 0.6 2.1 2 1 0 2 2 2 0 zinc-finger-containing domain Nudix_N_2 PF14803.6 gi|289582404|ref|YP_003480870.1| - 0.14 12.1 12.8 2.8 8.0 3.3 3.8 3 1 0 3 3 3 0 Nudix N-terminal HalOD2 PF18547.1 gi|289582404|ref|YP_003480870.1| - 0.14 12.1 11.6 0.51 10.3 0.1 3.9 3 1 1 4 4 4 0 Halobacterial output domain 2 TackOD1 PF18551.1 gi|289582404|ref|YP_003480870.1| - 0.17 11.5 6.8 2.6 7.7 6.8 2.5 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|289582404|ref|YP_003480870.1| - 0.2 11.7 8.8 1.5e+02 2.5 8.8 2.6 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|289582404|ref|YP_003480870.1| - 0.27 11.4 11.5 0.37 10.9 0.1 3.8 3 1 0 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|289582404|ref|YP_003480870.1| - 0.31 10.8 8.8 10 5.9 0.1 4.0 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|289582404|ref|YP_003480870.1| - 0.37 10.4 11.5 1.2 8.8 0.2 3.9 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-RRPl_C4 PF17026.5 gi|289582404|ref|YP_003480870.1| - 0.53 10.4 4.6 2.8 8.1 4.6 1.9 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type HypA PF01155.19 gi|289582404|ref|YP_003480870.1| - 0.56 10.2 10.3 3.2 7.8 0.9 3.0 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2387 PF09526.10 gi|289582404|ref|YP_003480870.1| - 1.9 8.7 10.1 2.1 8.6 0.5 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Ribosomal_S27 PF01599.19 gi|289582404|ref|YP_003480870.1| - 1.9 8.7 6.6 4.3 7.6 2.5 2.5 2 0 0 2 2 2 0 Ribosomal protein S27a zf-IS66 PF13005.7 gi|289582404|ref|YP_003480870.1| - 2.1 8.8 10.8 3.8 8.0 0.0 4.0 4 1 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DiS_P_DiS PF06750.13 gi|289582404|ref|YP_003480870.1| - 3.2 7.9 4.3 3.3 7.9 0.3 2.7 2 1 1 3 3 3 0 Bacterial Peptidase A24 N-terminal domain UPF0547 PF10571.9 gi|289582404|ref|YP_003480870.1| - 3.2 7.9 18.6 0.96 9.6 0.2 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|289582404|ref|YP_003480870.1| - 4.4 7.3 9.5 13 5.8 0.6 3.6 3 1 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|289582404|ref|YP_003480870.1| - 8.1 6.3 12.8 30 4.5 0.7 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|289582404|ref|YP_003480870.1| - 9.8 6.0 12.8 75 3.1 0.1 4.1 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MFS_1 PF07690.16 gi|289582406|ref|YP_003480872.1| - 1.3e-53 182.2 47.5 3.9e-27 95.1 18.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|289582406|ref|YP_003480872.1| - 7.3e-09 35.0 28.8 3.8e-05 22.7 8.8 3.8 2 2 1 4 4 4 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|289582406|ref|YP_003480872.1| - 2.1e-08 33.4 12.2 9.4e-08 31.3 12.2 1.9 1 1 0 1 1 1 1 MFS_1 like family PqqD PF05402.12 gi|289582407|ref|YP_003480873.1| - 0.0066 16.7 0.0 0.015 15.6 0.0 1.7 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) NUDIX PF00293.28 gi|289582410|ref|YP_003480876.1| - 1e-18 67.7 0.5 1.2e-18 67.4 0.5 1.0 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|289582410|ref|YP_003480876.1| - 0.01 16.2 0.0 0.014 15.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain Ribosomal_S10 PF00338.22 gi|289582411|ref|YP_003480877.1| - 8.6e-14 51.6 0.0 1e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.28 gi|289582416|ref|YP_003480882.1| - 1.4e-25 90.2 6.9 2e-25 89.7 6.9 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289582416|ref|YP_003480882.1| - 3.8e-13 49.3 0.7 7.9e-13 48.3 0.7 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF5560 PF17715.1 gi|289582416|ref|YP_003480882.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5560) Peptidase_M48 PF01435.18 gi|289582417|ref|YP_003480883.1| - 2.4e-26 92.7 0.1 4e-26 92.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289582417|ref|YP_003480883.1| - 0.00061 19.1 0.2 0.02 14.1 0.0 2.4 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289582417|ref|YP_003480883.1| - 0.0089 15.9 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|289582417|ref|YP_003480883.1| - 0.082 13.1 0.7 0.43 10.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) HSP20 PF00011.21 gi|289582418|ref|YP_003480884.1| - 1.8e-06 28.0 0.0 3.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family FKBP26_C PF18046.1 gi|289582418|ref|YP_003480884.1| - 0.0061 16.6 0.0 0.022 14.8 0.0 1.8 2 0 0 2 2 2 1 FKBP26_C-terminal ArsA_HSP20 PF17886.1 gi|289582418|ref|YP_003480884.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 HSP20-like domain found in ArsA Dicty_REP PF05086.12 gi|289582418|ref|YP_003480884.1| - 5.7 4.8 5.0 7 4.5 5.0 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Radical_SAM PF04055.21 gi|289582420|ref|YP_003480886.1| - 4e-12 46.8 0.0 4.2e-11 43.5 0.0 2.7 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.23 gi|289582420|ref|YP_003480886.1| - 1.6e-05 24.5 0.1 6.7e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|289582420|ref|YP_003480886.1| - 0.00017 21.8 0.0 0.00034 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|289582420|ref|YP_003480886.1| - 0.0045 17.6 0.0 0.011 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|289582420|ref|YP_003480886.1| - 0.0084 16.1 0.0 0.022 14.7 0.0 1.7 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|289582420|ref|YP_003480886.1| - 0.021 14.9 0.0 0.064 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif TRAM PF01938.20 gi|289582421|ref|YP_003480887.1| - 6.1e-15 55.0 3.4 9.9e-15 54.3 3.4 1.4 1 0 0 1 1 1 1 TRAM domain PcrB PF01884.17 gi|289582422|ref|YP_003480888.1| - 4.1e-35 121.3 2.3 8.3e-35 120.3 2.3 1.4 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|289582422|ref|YP_003480888.1| - 0.00017 21.1 0.0 0.00035 20.1 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein OKR_DC_1_N PF03709.15 gi|289582422|ref|YP_003480888.1| - 0.005 17.1 0.0 0.13 12.5 0.0 2.3 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Dus PF01207.17 gi|289582422|ref|YP_003480888.1| - 0.028 13.5 0.0 0.045 12.8 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Kelch_1 PF01344.25 gi|289582422|ref|YP_003480888.1| - 0.043 13.4 0.0 0.24 11.0 0.0 2.2 2 0 0 2 2 2 0 Kelch motif DHO_dh PF01180.21 gi|289582422|ref|YP_003480888.1| - 0.074 12.2 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NAD_binding_7 PF13241.6 gi|289582422|ref|YP_003480888.1| - 0.13 12.8 0.0 0.4 11.1 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding CxxCxxCC PF03692.15 gi|289582423|ref|YP_003480889.1| - 3.2e-12 47.0 0.7 5.5e-12 46.2 0.7 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|289582423|ref|YP_003480889.1| - 0.1 13.0 2.5 0.14 12.5 0.1 2.1 2 0 0 2 2 2 0 High potential iron-sulfur protein DUF3109 PF11307.8 gi|289582423|ref|YP_003480889.1| - 0.22 11.3 1.7 0.59 9.9 1.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) DUF2892 PF11127.8 gi|289582425|ref|YP_003480891.1| - 7.8e-13 48.3 1.4 1.8e-12 47.1 1.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) Abhydrolase_1 PF00561.20 gi|289582426|ref|YP_003480892.1| - 3.4e-19 69.5 0.1 3.6e-16 59.6 0.1 2.7 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289582426|ref|YP_003480892.1| - 4.9e-17 63.3 0.2 1.3e-16 61.9 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family ApbA PF02558.16 gi|289582426|ref|YP_003480892.1| - 4.5e-16 58.9 0.0 8.5e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Hydrolase_4 PF12146.8 gi|289582426|ref|YP_003480892.1| - 1.9e-07 30.6 0.0 3.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|289582426|ref|YP_003480892.1| - 5.8e-05 21.9 0.0 8.5e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Ndr family NAD_binding_7 PF13241.6 gi|289582426|ref|YP_003480892.1| - 0.002 18.5 0.0 0.004 17.6 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|289582426|ref|YP_003480892.1| - 0.0064 15.8 0.1 0.013 14.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|289582426|ref|YP_003480892.1| - 0.0069 16.6 0.2 0.019 15.2 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|289582426|ref|YP_003480892.1| - 0.028 14.0 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|289582426|ref|YP_003480892.1| - 0.15 12.7 0.1 0.48 11.0 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TAT_signal PF10518.9 gi|289582427|ref|YP_003480893.1| - 5.4 7.0 11.8 0.096 12.6 4.6 2.0 2 1 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence fn3 PF00041.21 gi|289582428|ref|YP_003480894.1| - 7.3e-08 32.7 0.3 1.1 9.7 0.0 5.0 5 0 0 5 5 5 3 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 gi|289582428|ref|YP_003480894.1| - 1.1e-07 32.3 0.1 0.21 12.2 0.0 5.0 5 0 0 5 5 5 3 Purple acid Phosphatase, N-terminal domain Trp_halogenase PF04820.14 gi|289582429|ref|YP_003480895.1| - 2e-12 46.7 2.0 1.7e-08 33.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|289582429|ref|YP_003480895.1| - 5.5e-11 42.7 6.9 6.8e-06 25.9 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|289582429|ref|YP_003480895.1| - 1.5e-10 40.9 2.8 9.3e-10 38.3 2.8 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|289582429|ref|YP_003480895.1| - 2.2e-10 40.2 10.5 5.1e-06 25.8 3.3 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|289582429|ref|YP_003480895.1| - 1.5e-07 31.1 10.8 0.00037 20.0 2.1 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|289582429|ref|YP_003480895.1| - 1.6e-06 27.5 3.9 2.8e-06 26.7 3.9 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|289582429|ref|YP_003480895.1| - 4.8e-06 26.7 0.7 4.8e-06 26.7 0.7 3.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|289582429|ref|YP_003480895.1| - 5.8e-06 26.8 1.6 0.0014 19.1 0.7 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|289582429|ref|YP_003480895.1| - 1.8e-05 24.1 0.4 6.4e-05 22.3 0.1 1.9 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|289582429|ref|YP_003480895.1| - 2.2e-05 23.4 1.1 3.3e-05 22.8 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|289582429|ref|YP_003480895.1| - 7.2e-05 22.2 1.0 7.2e-05 22.2 1.0 2.5 2 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|289582429|ref|YP_003480895.1| - 0.00017 20.8 3.7 0.079 12.0 0.5 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|289582429|ref|YP_003480895.1| - 0.0005 19.4 0.6 0.0042 16.4 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|289582429|ref|YP_003480895.1| - 0.0014 18.5 0.1 0.0033 17.3 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|289582429|ref|YP_003480895.1| - 0.0037 16.6 0.3 0.0037 16.6 0.3 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|289582429|ref|YP_003480895.1| - 0.0037 16.9 0.3 0.0065 16.1 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GMC_oxred_N PF00732.19 gi|289582429|ref|YP_003480895.1| - 0.012 15.0 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase Shikimate_DH PF01488.20 gi|289582429|ref|YP_003480895.1| - 0.063 13.3 0.0 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|289582429|ref|YP_003480895.1| - 0.074 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 ThiF family Ferredoxin_N PF16947.5 gi|289582429|ref|YP_003480895.1| - 0.091 12.9 1.1 3.6 7.8 0.2 3.0 2 1 1 3 3 3 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Amino_oxidase PF01593.24 gi|289582429|ref|YP_003480895.1| - 0.51 9.6 5.2 0.81 8.9 0.0 2.8 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Fer2 PF00111.27 gi|289582430|ref|YP_003480896.1| - 1.9e-10 40.6 3.9 2.7e-10 40.0 3.9 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|289582430|ref|YP_003480896.1| - 0.045 13.8 0.3 0.049 13.6 0.3 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Tubulin PF00091.25 gi|289582431|ref|YP_003480897.1| - 1.6e-41 142.7 0.5 2.3e-41 142.1 0.5 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|289582431|ref|YP_003480897.1| - 6.4e-36 122.6 1.7 6.4e-36 122.6 1.7 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|289582431|ref|YP_003480897.1| - 0.0089 15.9 2.2 0.02 14.8 0.1 2.3 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|289582431|ref|YP_003480897.1| - 0.15 11.2 9.3 0.13 11.4 2.4 2.7 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|289582432|ref|YP_003480898.1| - 1.6e-60 204.2 0.0 2.2e-60 203.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF2201 PF09967.9 gi|289582432|ref|YP_003480898.1| - 0.09 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 VWA-like domain (DUF2201) YhzD PF14120.6 gi|289582432|ref|YP_003480898.1| - 0.1 12.7 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 YhzD-like protein Na_Ca_ex PF01699.24 gi|289582433|ref|YP_003480899.1| - 7.2e-46 155.9 36.3 4.8e-25 88.3 10.5 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein CrgA PF06781.12 gi|289582433|ref|YP_003480899.1| - 4.9 7.3 4.8 14 5.8 0.0 3.4 3 0 0 3 3 3 0 Cell division protein CrgA FRQ PF09421.10 gi|289582438|ref|YP_003480904.1| - 0.026 12.6 0.1 0.031 12.3 0.1 1.0 1 0 0 1 1 1 0 Frequency clock protein PRD PF00874.20 gi|289582439|ref|YP_003480905.1| - 0.081 13.2 0.1 0.097 13.0 0.1 1.1 1 0 0 1 1 1 0 PRD domain Shikimate_dh_N PF08501.11 gi|289582440|ref|YP_003480906.1| - 6.3e-24 84.0 0.0 1.5e-23 82.8 0.0 1.7 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|289582440|ref|YP_003480906.1| - 1.8e-12 46.8 1.7 3.9e-12 45.7 1.7 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|289582440|ref|YP_003480906.1| - 2e-09 37.6 0.1 3.5e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|289582440|ref|YP_003480906.1| - 7.2e-06 25.4 0.1 0.00013 21.3 0.1 2.1 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AdoHcyase_NAD PF00670.21 gi|289582440|ref|YP_003480906.1| - 0.0003 20.9 0.5 0.00048 20.2 0.5 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289582440|ref|YP_003480906.1| - 0.001 18.4 0.1 0.002 17.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|289582440|ref|YP_003480906.1| - 0.002 17.6 1.1 0.0038 16.7 1.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.12 gi|289582440|ref|YP_003480906.1| - 0.003 17.1 0.4 0.0049 16.5 0.4 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_3 PF01494.19 gi|289582440|ref|YP_003480906.1| - 0.0069 15.7 0.4 0.0096 15.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|289582440|ref|YP_003480906.1| - 0.0077 15.4 4.7 0.016 14.3 4.7 1.5 1 0 0 1 1 1 1 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|289582440|ref|YP_003480906.1| - 0.0098 16.2 1.1 0.033 14.4 1.1 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|289582440|ref|YP_003480906.1| - 0.013 16.0 0.4 0.028 15.0 0.4 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|289582440|ref|YP_003480906.1| - 0.025 14.2 0.2 0.04 13.6 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|289582440|ref|YP_003480906.1| - 0.033 14.1 0.3 0.047 13.6 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|289582440|ref|YP_003480906.1| - 0.11 12.5 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 gi|289582440|ref|YP_003480906.1| - 0.35 9.9 2.5 0.47 9.5 2.5 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A HHH_5 PF14520.6 gi|289582441|ref|YP_003480907.1| - 3.3e-10 40.4 0.3 5.8e-10 39.6 0.3 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|289582441|ref|YP_003480907.1| - 6.9e-05 23.1 0.0 0.00036 20.8 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|289582441|ref|YP_003480907.1| - 0.0041 17.3 0.0 0.0065 16.7 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|289582441|ref|YP_003480907.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda FAM196 PF15265.6 gi|289582441|ref|YP_003480907.1| - 4.4 6.7 13.8 6.4 6.2 13.8 1.2 1 0 0 1 1 1 0 FAM196 family Chorismate_bind PF00425.18 gi|289582442|ref|YP_003480908.1| - 8.4e-101 336.9 0.0 1.2e-100 336.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|289582442|ref|YP_003480908.1| - 1.8e-08 34.7 0.0 1.9e-07 31.4 0.0 2.5 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|289582443|ref|YP_003480909.1| - 1.9e-42 145.2 0.0 2.8e-42 144.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|289582443|ref|YP_003480909.1| - 1.2e-08 35.0 0.6 3.2e-08 33.6 0.6 1.7 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.19 gi|289582444|ref|YP_003480910.1| - 5.2e-49 167.1 0.0 6.2e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Relaxase PF03432.14 gi|289582444|ref|YP_003480910.1| - 0.29 10.7 0.0 0.44 10.1 0.0 1.2 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain Rieske PF00355.26 gi|289582445|ref|YP_003480911.1| - 0.00055 19.8 0.1 0.00074 19.4 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_20 PF12840.7 gi|289582446|ref|YP_003480912.1| - 0.00024 21.1 1.3 0.0066 16.5 1.3 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|289582447|ref|YP_003480913.1| - 6.9e-05 22.8 0.3 0.00011 22.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289582447|ref|YP_003480913.1| - 0.00011 22.0 0.3 0.00016 21.5 0.3 1.3 1 0 0 1 1 1 1 MarR family Zn-ribbon_8 PF09723.10 gi|289582447|ref|YP_003480913.1| - 0.0092 16.1 3.6 0.017 15.2 3.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Sigma70_r3 PF04539.16 gi|289582447|ref|YP_003480913.1| - 0.02 15.0 0.4 0.029 14.5 0.4 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 DprA_WH PF17782.1 gi|289582447|ref|YP_003480913.1| - 0.036 14.2 1.7 0.078 13.1 1.7 1.6 1 0 0 1 1 1 0 DprA winged helix domain HypA PF01155.19 gi|289582447|ref|YP_003480913.1| - 0.045 13.8 1.3 0.07 13.2 1.0 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_11 PF08279.12 gi|289582447|ref|YP_003480913.1| - 0.078 12.9 0.0 0.17 11.9 0.0 1.6 1 1 1 2 2 2 0 HTH domain HTH_5 PF01022.20 gi|289582447|ref|YP_003480913.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-trcl PF13451.6 gi|289582447|ref|YP_003480913.1| - 0.16 11.9 1.0 0.16 11.9 1.0 2.2 1 1 1 2 2 2 0 Probable zinc-ribbon domain FYDLN_acid PF09538.10 gi|289582447|ref|YP_003480913.1| - 0.17 12.6 1.1 0.17 12.6 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Rubredoxin_2 PF18073.1 gi|289582447|ref|YP_003480913.1| - 0.19 11.5 4.0 4.9 7.0 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain NTP_transferase PF00483.23 gi|289582448|ref|YP_003480914.1| - 1.8e-39 135.8 0.0 2.3e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289582448|ref|YP_003480914.1| - 1.1e-11 45.3 0.0 1.2e-11 45.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|289582448|ref|YP_003480914.1| - 0.0019 17.9 0.5 0.14 11.9 0.0 3.0 3 1 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|289582448|ref|YP_003480914.1| - 0.02 14.6 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NfeD PF01957.18 gi|289582449|ref|YP_003480915.1| - 0.00024 21.4 0.0 0.00056 20.2 0.0 1.7 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Cytadhesin_P30 PF07271.11 gi|289582449|ref|YP_003480915.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 Pex14_N PF04695.13 gi|289582449|ref|YP_003480915.1| - 0.95 10.1 4.7 2 9.0 4.7 1.6 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Band_7 PF01145.25 gi|289582450|ref|YP_003480916.1| - 2.6e-37 128.5 3.7 2.6e-37 128.5 3.7 2.0 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|289582450|ref|YP_003480916.1| - 0.0014 18.4 0.1 0.0027 17.5 0.1 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family MarR_2 PF12802.7 gi|289582451|ref|YP_003480917.1| - 1.7e-10 40.6 0.7 1.4e-07 31.3 0.3 2.7 2 1 0 2 2 2 2 MarR family MarR PF01047.22 gi|289582451|ref|YP_003480917.1| - 3.4e-09 36.5 0.0 8.4e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|289582451|ref|YP_003480917.1| - 7.1e-09 35.6 0.4 0.00037 20.5 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|289582451|ref|YP_003480917.1| - 1.5e-08 34.4 0.0 0.0002 21.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|289582451|ref|YP_003480917.1| - 6.4e-08 32.0 0.0 3.5e-06 26.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|289582451|ref|YP_003480917.1| - 8.7e-08 32.2 0.0 0.0015 18.7 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain TrmB PF01978.19 gi|289582451|ref|YP_003480917.1| - 7e-06 25.8 0.0 0.0008 19.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|289582451|ref|YP_003480917.1| - 3.9e-05 23.6 0.0 0.00016 21.6 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|289582451|ref|YP_003480917.1| - 8.3e-05 22.7 0.0 0.00018 21.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|289582451|ref|YP_003480917.1| - 0.00032 20.6 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain DUF4423 PF14394.6 gi|289582451|ref|YP_003480917.1| - 0.00091 19.0 0.0 1 9.1 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4423) DprA_WH PF17782.1 gi|289582451|ref|YP_003480917.1| - 0.0011 19.0 0.8 0.4 10.8 0.0 2.4 2 0 0 2 2 2 2 DprA winged helix domain HTH_IclR PF09339.10 gi|289582451|ref|YP_003480917.1| - 0.0029 17.4 3.0 0.0038 17.0 0.4 2.6 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|289582451|ref|YP_003480917.1| - 0.012 15.5 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.13 gi|289582451|ref|YP_003480917.1| - 0.021 14.5 0.0 1.7 8.3 0.0 2.3 2 0 0 2 2 2 0 Replication protein C N-terminal domain GntR PF00392.21 gi|289582451|ref|YP_003480917.1| - 0.03 14.0 0.0 0.089 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|289582451|ref|YP_003480917.1| - 0.041 14.2 0.0 0.084 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|289582451|ref|YP_003480917.1| - 0.078 13.1 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.6 gi|289582451|ref|YP_003480917.1| - 0.16 11.9 0.6 0.39 10.6 0.1 2.1 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HAD_2 PF13419.6 gi|289582452|ref|YP_003480918.1| - 1e-11 45.2 0.0 1.5e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289582452|ref|YP_003480918.1| - 7.3e-07 29.2 0.0 1.7e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|289582452|ref|YP_003480918.1| - 3.2e-05 24.3 0.0 0.0065 16.8 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase LexA_DNA_bind PF01726.16 gi|289582453|ref|YP_003480919.1| - 0.0019 17.9 0.0 0.0024 17.6 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain NTPase_I-T PF01931.18 gi|289582454|ref|YP_003480920.1| - 3.9e-48 163.3 0.0 5.5e-48 162.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF84 TFIIB PF00382.19 gi|289582455|ref|YP_003480921.1| - 4.7e-39 132.3 0.5 1.1e-19 70.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289582455|ref|YP_003480921.1| - 1.9e-16 59.3 3.3 3.9e-16 58.3 3.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|289582455|ref|YP_003480921.1| - 0.0078 15.7 0.0 0.56 9.8 0.0 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|289582455|ref|YP_003480921.1| - 0.015 15.0 1.7 0.045 13.5 1.6 1.8 1 1 1 2 2 2 0 A2L zinc ribbon domain Anti-TRAP PF15777.5 gi|289582455|ref|YP_003480921.1| - 0.018 15.0 0.5 0.035 14.1 0.5 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5419 PF17441.2 gi|289582455|ref|YP_003480921.1| - 0.11 12.6 0.0 5 7.3 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5419) HTH_Tnp_ISL3 PF13542.6 gi|289582455|ref|YP_003480921.1| - 0.26 10.8 1.4 0.64 9.5 0.3 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Zn-ribbon_8 PF09723.10 gi|289582455|ref|YP_003480921.1| - 3.5 7.8 4.5 16 5.7 0.5 2.4 1 1 2 3 3 3 0 Zinc ribbon domain DHquinase_I PF01487.15 gi|289582456|ref|YP_003480922.1| - 1.1e-41 143.6 0.4 1.5e-41 143.2 0.4 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase DZR PF12773.7 gi|289582457|ref|YP_003480923.1| - 2.5e-05 24.2 0.7 3.4e-05 23.8 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289582457|ref|YP_003480923.1| - 0.00012 21.7 0.6 0.00018 21.1 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289582457|ref|YP_003480923.1| - 0.00029 20.1 0.9 0.00049 19.4 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|289582457|ref|YP_003480923.1| - 0.0088 16.1 0.2 0.019 15.1 0.2 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|289582457|ref|YP_003480923.1| - 0.064 14.0 0.7 0.091 13.5 0.7 1.4 1 1 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|289582457|ref|YP_003480923.1| - 0.095 12.6 0.5 8.1 6.5 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal DHQS PF01959.16 gi|289582458|ref|YP_003480924.1| - 7.5e-141 469.1 9.2 2.5e-140 467.4 9.2 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|289582458|ref|YP_003480924.1| - 0.0033 17.0 0.0 0.0076 15.8 0.0 1.6 1 0 0 1 1 1 1 Hint module QRPTase_C PF01729.19 gi|289582458|ref|YP_003480924.1| - 0.013 15.3 1.2 0.89 9.3 0.2 2.4 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.6 gi|289582458|ref|YP_003480924.1| - 0.021 15.1 0.3 14 6.0 0.0 3.0 3 0 0 3 3 3 0 Hint domain TNT PF14021.6 gi|289582458|ref|YP_003480924.1| - 0.047 14.3 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin DUF1416 PF07210.12 gi|289582458|ref|YP_003480924.1| - 0.054 13.4 0.1 0.42 10.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1416) DUF1887 PF09002.11 gi|289582460|ref|YP_003480926.1| - 0.051 12.3 0.0 0.078 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) DUF4364 PF14277.6 gi|289582460|ref|YP_003480926.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HAD_2 PF13419.6 gi|289582461|ref|YP_003480927.1| - 1.5e-19 70.8 0.0 2e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289582461|ref|YP_003480927.1| - 4.5e-12 46.7 0.2 4.5e-11 43.4 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289582461|ref|YP_003480927.1| - 6e-08 32.6 0.0 1.2e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|289582461|ref|YP_003480927.1| - 9.7e-05 22.8 0.3 0.00016 22.1 0.3 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|289582461|ref|YP_003480927.1| - 0.17 12.0 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase SprT-like PF10263.9 gi|289582463|ref|YP_003480929.1| - 6.8e-13 48.5 0.0 9.7e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 SprT-like family BSP PF04450.12 gi|289582463|ref|YP_003480929.1| - 0.021 14.6 0.1 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF4157 PF13699.6 gi|289582463|ref|YP_003480929.1| - 0.052 13.8 0.1 0.096 12.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) NUP PF06516.11 gi|289582464|ref|YP_003480930.1| - 7.9e-50 169.8 0.0 1e-49 169.4 0.0 1.0 1 0 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.20 gi|289582464|ref|YP_003480930.1| - 2.8e-17 62.8 0.9 4.3e-17 62.2 0.9 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily DeoC PF01791.9 gi|289582465|ref|YP_003480931.1| - 1.9e-44 152.0 0.1 2.3e-44 151.8 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|289582465|ref|YP_003480931.1| - 0.0031 17.0 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|289582465|ref|YP_003480931.1| - 0.049 13.2 0.3 0.093 12.3 0.3 1.5 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Trp_syntA PF00290.20 gi|289582466|ref|YP_003480932.1| - 1.2e-88 296.4 0.0 1.3e-88 296.2 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|289582466|ref|YP_003480932.1| - 0.00057 19.4 0.0 0.0013 18.2 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|289582466|ref|YP_003480932.1| - 0.0023 17.4 0.6 0.083 12.3 0.2 2.1 2 0 0 2 2 2 1 PcrB family ThiG PF05690.14 gi|289582466|ref|YP_003480932.1| - 0.016 14.5 0.2 0.025 13.9 0.2 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PucR PF07905.11 gi|289582466|ref|YP_003480932.1| - 0.017 15.4 0.0 0.11 12.8 0.0 2.1 1 1 0 2 2 2 0 Purine catabolism regulatory protein-like family ALF PF03752.13 gi|289582466|ref|YP_003480932.1| - 0.043 13.8 0.4 0.19 11.7 0.4 2.2 1 0 0 1 1 1 0 Short repeats of unknown function PALP PF00291.25 gi|289582467|ref|YP_003480933.1| - 2.2e-39 135.7 0.4 3.7e-39 134.9 0.4 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|289582468|ref|YP_003480934.1| - 4.7e-65 219.3 0.0 5.6e-64 215.8 0.0 1.9 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|289582468|ref|YP_003480934.1| - 0.00077 18.7 0.3 0.011 14.9 0.0 2.5 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|289582468|ref|YP_003480934.1| - 0.0028 17.2 0.0 0.024 14.1 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|289582468|ref|YP_003480934.1| - 0.0041 16.2 1.2 0.014 14.4 1.3 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase AP_endonuc_2 PF01261.24 gi|289582468|ref|YP_003480934.1| - 0.016 14.6 0.8 0.18 11.2 0.1 2.6 3 0 0 3 3 3 0 Xylose isomerase-like TIM barrel Trp_syntA PF00290.20 gi|289582468|ref|YP_003480934.1| - 0.024 13.5 0.0 0.05 12.4 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ThiG PF05690.14 gi|289582468|ref|YP_003480934.1| - 0.15 11.4 2.2 0.16 11.3 0.2 2.0 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG DNA_binding_1 PF01035.20 gi|289582469|ref|YP_003480935.1| - 1.9e-05 24.7 0.0 3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain CPBP PF02517.16 gi|289582471|ref|YP_003480937.1| - 1.6e-12 47.7 12.8 1.6e-12 47.7 12.8 2.5 2 1 0 2 2 2 2 CPBP intramembrane metalloprotease Mucin PF01456.17 gi|289582471|ref|YP_003480937.1| - 0.49 10.4 13.7 0.018 15.0 7.8 1.7 2 0 0 2 2 2 0 Mucin-like glycoprotein Lon_C PF05362.13 gi|289582472|ref|YP_003480938.1| - 5.5e-35 120.8 3.3 8.2e-35 120.2 3.3 1.2 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|289582472|ref|YP_003480938.1| - 5.2e-30 104.7 0.0 4.5e-23 81.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|289582472|ref|YP_003480938.1| - 8.9e-17 61.2 0.1 5.2e-10 39.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|289582472|ref|YP_003480938.1| - 2.8e-14 53.2 0.0 3.9e-08 33.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|289582472|ref|YP_003480938.1| - 3.6e-10 40.0 0.0 0.0013 18.7 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|289582472|ref|YP_003480938.1| - 5.1e-10 39.3 0.8 1.1e-09 38.2 0.8 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase RuvB_N PF05496.12 gi|289582472|ref|YP_003480938.1| - 1.6e-06 27.9 0.0 0.002 17.9 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|289582472|ref|YP_003480938.1| - 1.7e-06 28.5 0.0 0.039 14.4 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|289582472|ref|YP_003480938.1| - 5e-06 25.8 0.1 0.097 11.7 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain AAA_3 PF07726.11 gi|289582472|ref|YP_003480938.1| - 5.7e-05 23.0 0.1 0.1 12.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|289582472|ref|YP_003480938.1| - 0.00019 20.8 0.1 0.019 14.2 0.1 2.4 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_19 PF13245.6 gi|289582472|ref|YP_003480938.1| - 0.00021 21.7 0.0 0.46 10.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 gi|289582472|ref|YP_003480938.1| - 0.00033 20.8 0.0 0.43 10.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|289582472|ref|YP_003480938.1| - 0.00035 20.1 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|289582472|ref|YP_003480938.1| - 0.00061 20.1 0.0 0.006 16.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|289582472|ref|YP_003480938.1| - 0.0024 17.6 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|289582472|ref|YP_003480938.1| - 0.012 15.1 0.0 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|289582472|ref|YP_003480938.1| - 0.013 15.6 0.1 0.053 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|289582472|ref|YP_003480938.1| - 0.015 14.5 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|289582472|ref|YP_003480938.1| - 0.032 14.3 0.0 5.1 7.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 gi|289582472|ref|YP_003480938.1| - 0.032 14.7 0.0 0.12 12.9 0.0 1.9 2 0 0 2 2 1 0 ABC transporter IstB_IS21 PF01695.17 gi|289582472|ref|YP_003480938.1| - 0.033 13.9 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_PrkA PF08298.11 gi|289582472|ref|YP_003480938.1| - 0.038 12.9 0.0 0.94 8.3 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain NACHT PF05729.12 gi|289582472|ref|YP_003480938.1| - 0.042 13.8 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|289582472|ref|YP_003480938.1| - 0.068 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|289582472|ref|YP_003480938.1| - 0.081 11.8 0.1 0.18 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain MCM_lid PF17855.1 gi|289582472|ref|YP_003480938.1| - 0.089 13.2 0.2 0.37 11.3 0.0 2.1 1 1 1 2 2 2 0 MCM AAA-lid domain DUF1189 PF06691.11 gi|289582472|ref|YP_003480938.1| - 0.15 11.6 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) CTP_transf_like PF01467.26 gi|289582473|ref|YP_003480939.1| - 1.6e-14 54.3 0.1 5.4e-14 52.6 0.1 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|289582473|ref|YP_003480939.1| - 0.0023 17.6 0.0 0.0095 15.6 0.0 1.9 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain SAM_adeno_trans PF01887.16 gi|289582475|ref|YP_003480941.1| - 2.4e-66 223.6 0.2 6.1e-61 205.9 0.1 2.0 2 0 0 2 2 2 2 S-adenosyl-l-methionine hydroxide adenosyltransferase Mucin PF01456.17 gi|289582475|ref|YP_003480941.1| - 7.1 6.6 21.1 12 5.9 21.1 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein HalOD1 PF18545.1 gi|289582476|ref|YP_003480942.1| - 1.7e-20 73.1 0.3 2.3e-20 72.6 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 RD3 PF14473.6 gi|289582476|ref|YP_003480942.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 RD3 protein Cpn60_TCP1 PF00118.24 gi|289582477|ref|YP_003480943.1| - 1.4e-146 489.0 16.3 1.6e-146 488.8 16.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family FumaraseC_C PF10415.9 gi|289582477|ref|YP_003480943.1| - 0.061 13.7 0.1 0.2 12.1 0.1 1.9 1 0 0 1 1 1 0 Fumarase C C-terminus Amidohydro_2 PF04909.14 gi|289582478|ref|YP_003480944.1| - 1.5e-08 34.8 0.8 2e-08 34.4 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase DUF368 PF04018.13 gi|289582479|ref|YP_003480945.1| - 1.3e-57 195.2 17.8 1.7e-57 194.9 17.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) Glycos_transf_2 PF00535.26 gi|289582480|ref|YP_003480946.1| - 3e-13 49.9 0.1 4.3e-13 49.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289582480|ref|YP_003480946.1| - 8.8e-09 35.6 3.1 1.8e-07 31.3 2.5 2.6 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|289582480|ref|YP_003480946.1| - 4.8e-05 23.0 0.0 0.0059 16.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Methyltransf_25 PF13649.6 gi|289582481|ref|YP_003480947.1| - 7.1e-24 84.3 0.1 1.4e-23 83.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582481|ref|YP_003480947.1| - 1.3e-23 83.4 0.0 2.2e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582481|ref|YP_003480947.1| - 2.9e-18 66.1 0.0 3.6e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582481|ref|YP_003480947.1| - 1.1e-14 54.9 0.0 3e-14 53.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582481|ref|YP_003480947.1| - 1.4e-14 54.3 0.0 1.9e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289582481|ref|YP_003480947.1| - 2e-14 53.5 0.0 2.8e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|289582481|ref|YP_003480947.1| - 2.6e-06 27.1 0.0 4.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|289582481|ref|YP_003480947.1| - 5e-05 23.1 0.0 0.00014 21.6 0.0 1.7 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|289582481|ref|YP_003480947.1| - 0.00018 20.5 0.0 0.00026 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|289582481|ref|YP_003480947.1| - 0.00022 20.8 0.0 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|289582481|ref|YP_003480947.1| - 0.001 18.2 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|289582481|ref|YP_003480947.1| - 0.0019 17.5 0.0 0.003 16.9 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|289582481|ref|YP_003480947.1| - 0.002 17.6 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TPMT PF05724.11 gi|289582481|ref|YP_003480947.1| - 0.0036 17.0 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|289582481|ref|YP_003480947.1| - 0.0055 16.7 0.0 0.0079 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_20 PF12147.8 gi|289582481|ref|YP_003480947.1| - 0.0064 15.7 0.0 0.0094 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TehB PF03848.14 gi|289582481|ref|YP_003480947.1| - 0.0073 15.7 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|289582481|ref|YP_003480947.1| - 0.017 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.11 gi|289582481|ref|YP_003480947.1| - 0.026 13.5 0.1 0.06 12.3 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.12 gi|289582481|ref|YP_003480947.1| - 0.031 14.1 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_15 PF09445.10 gi|289582481|ref|YP_003480947.1| - 0.076 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|289582481|ref|YP_003480947.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_24 PF13412.6 gi|289582482|ref|YP_003480948.1| - 3.1e-05 23.5 0.0 5.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289582482|ref|YP_003480948.1| - 8.6e-05 22.4 0.1 0.00012 21.9 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|289582482|ref|YP_003480948.1| - 0.0003 20.4 0.0 0.00052 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|289582482|ref|YP_003480948.1| - 0.0009 19.3 0.2 0.0017 18.4 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|289582482|ref|YP_003480948.1| - 0.0075 16.1 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|289582482|ref|YP_003480948.1| - 0.0076 16.1 0.0 0.0097 15.8 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_12 PF08461.10 gi|289582482|ref|YP_003480948.1| - 0.015 15.2 0.2 0.084 12.8 0.1 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|289582482|ref|YP_003480948.1| - 0.02 14.8 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family Peptidase_M28 PF04389.17 gi|289582482|ref|YP_003480948.1| - 0.031 14.0 0.0 0.038 13.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 HTH_36 PF13730.6 gi|289582482|ref|YP_003480948.1| - 0.062 13.3 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|289582482|ref|YP_003480948.1| - 0.066 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|289582482|ref|YP_003480948.1| - 0.078 13.0 0.0 0.1 12.6 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|289582482|ref|YP_003480948.1| - 0.091 12.6 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289582482|ref|YP_003480948.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|289582482|ref|YP_003480948.1| - 0.17 12.2 0.0 0.25 11.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B PF00753.27 gi|289582483|ref|YP_003480949.1| - 5.5e-17 62.4 5.2 8.6e-17 61.8 5.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289582483|ref|YP_003480949.1| - 0.00015 21.3 1.4 0.0003 20.4 1.4 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|289582483|ref|YP_003480949.1| - 0.0049 16.8 0.1 0.011 15.7 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Acetyltransf_6 PF13480.7 gi|289582483|ref|YP_003480949.1| - 0.047 13.8 1.1 0.39 10.9 0.1 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Lactamase_B_3 PF13483.6 gi|289582483|ref|YP_003480949.1| - 0.087 12.7 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF4148 PF13663.6 gi|289582483|ref|YP_003480949.1| - 0.11 12.8 0.6 0.24 11.6 0.6 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) SnAC PF14619.6 gi|289582485|ref|YP_003480951.1| - 0.052 14.2 0.6 0.093 13.3 0.6 1.6 1 0 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex Peptidase_C37 PF05416.12 gi|289582486|ref|YP_003480952.1| - 0.099 11.1 0.0 0.19 10.2 0.0 1.4 1 0 0 1 1 1 0 Southampton virus-type processing peptidase PhoR PF11808.8 gi|289582488|ref|YP_003480954.1| - 0.43 11.0 4.6 0.51 10.8 4.6 1.1 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR Halogen_Hydrol PF10112.9 gi|289582488|ref|YP_003480954.1| - 0.72 9.8 3.0 0.83 9.6 3.0 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Syndecan PF01034.20 gi|289582488|ref|YP_003480954.1| - 9.3 6.3 8.3 15 5.6 8.0 1.5 1 1 0 1 1 1 0 Syndecan domain DUF883 PF05957.13 gi|289582490|ref|YP_003480956.1| - 0.0034 17.9 1.5 0.0053 17.3 1.5 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) GCS2 PF04107.13 gi|289582491|ref|YP_003480957.1| - 6.2e-13 48.7 0.1 9.3e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidase PF01425.21 gi|289582492|ref|YP_003480958.1| - 2.1e-102 343.4 0.1 2.7e-102 343.1 0.1 1.0 1 0 0 1 1 1 1 Amidase Menin PF05053.13 gi|289582493|ref|YP_003480959.1| - 0.11 10.8 5.0 0.14 10.5 5.0 1.2 1 0 0 1 1 1 0 Menin ECH_1 PF00378.20 gi|289582494|ref|YP_003480960.1| - 1.1e-38 132.9 0.0 1.4e-38 132.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289582494|ref|YP_003480960.1| - 1.9e-28 100.0 0.0 2.1e-28 99.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase NAD_synthase PF02540.17 gi|289582495|ref|YP_003480961.1| - 4.3e-80 268.3 0.0 5e-80 268.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|289582495|ref|YP_003480961.1| - 6.7e-05 21.8 0.0 0.022 13.5 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|289582495|ref|YP_003480961.1| - 0.00075 19.3 0.0 0.001 18.8 0.0 1.3 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|289582495|ref|YP_003480961.1| - 0.046 13.2 0.0 0.21 11.1 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_Tnp_ISL3 PF13542.6 gi|289582495|ref|YP_003480961.1| - 0.052 13.0 0.0 1.1 8.7 0.0 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|289582495|ref|YP_003480961.1| - 0.055 13.3 0.0 0.71 9.8 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain HTH_Tnp_1 PF01527.20 gi|289582495|ref|YP_003480961.1| - 0.15 12.3 0.0 0.85 10.0 0.0 2.1 2 0 0 2 2 2 0 Transposase Macoilin PF09726.9 gi|289582496|ref|YP_003480962.1| - 5 5.5 14.6 6.6 5.2 14.6 1.1 1 0 0 1 1 1 0 Macoilin family NAD_kinase PF01513.21 gi|289582498|ref|YP_003480964.1| - 1.1e-35 123.3 1.8 1.8e-35 122.6 1.8 1.4 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|289582498|ref|YP_003480964.1| - 0.026 14.2 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain MDMPI_C PF07398.11 gi|289582498|ref|YP_003480964.1| - 1.8 9.5 11.1 0.47 11.3 1.0 3.4 2 2 0 3 3 3 0 MDMPI C-terminal domain RlaP PF10127.9 gi|289582500|ref|YP_003480966.1| - 2.1e-21 76.7 2.1 7e-12 45.5 0.1 3.2 3 1 0 3 3 3 2 RNA repair pathway DNA polymerase beta family Polbeta PF18765.1 gi|289582500|ref|YP_003480966.1| - 0.022 14.8 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|289582500|ref|YP_003480966.1| - 0.037 14.3 0.0 0.092 13.0 0.0 1.9 1 1 0 1 1 1 0 Nucleotidyltransferase domain adh_short PF00106.25 gi|289582501|ref|YP_003480967.1| - 1.8e-50 171.1 0.2 2.2e-50 170.8 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289582501|ref|YP_003480967.1| - 1.2e-41 142.8 0.3 1.4e-41 142.6 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|289582501|ref|YP_003480967.1| - 1.3e-12 48.0 0.1 1.8e-12 47.5 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|289582501|ref|YP_003480967.1| - 2.7e-05 24.2 6.7 4.5e-05 23.4 6.7 1.6 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289582501|ref|YP_003480967.1| - 0.00095 18.7 0.7 0.0016 18.0 0.3 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|289582501|ref|YP_003480967.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase GCHY-1 PF02649.14 gi|289582502|ref|YP_003480968.1| - 8.7e-76 254.8 1.2 9.9e-76 254.7 1.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 RecX PF02631.16 gi|289582502|ref|YP_003480968.1| - 0.023 15.2 1.0 0.37 11.2 0.0 2.5 3 0 0 3 3 3 0 RecX family PDCD9 PF07147.12 gi|289582502|ref|YP_003480968.1| - 0.11 11.7 0.1 0.23 10.7 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) TrmB PF01978.19 gi|289582503|ref|YP_003480969.1| - 2.9e-21 75.1 0.1 5.7e-21 74.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|289582503|ref|YP_003480969.1| - 0.046 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.11 gi|289582503|ref|YP_003480969.1| - 0.084 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Regulator_TrmB PF11495.8 gi|289582503|ref|YP_003480969.1| - 0.085 12.0 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB DALR_1 PF05746.15 gi|289582503|ref|YP_003480969.1| - 0.13 12.5 0.2 0.22 11.7 0.2 1.3 1 0 0 1 1 1 0 DALR anticodon binding domain acVLRF1 PF18859.1 gi|289582503|ref|YP_003480969.1| - 0.14 12.4 1.9 0.26 11.6 1.9 1.6 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor PhoU PF01895.19 gi|289582503|ref|YP_003480969.1| - 0.53 10.8 2.6 2.6 8.6 0.4 2.5 2 0 0 2 2 2 0 PhoU domain Thioredox_DsbH PF03190.15 gi|289582504|ref|YP_003480970.1| - 4.8e-25 88.4 0.0 9.4e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|289582504|ref|YP_003480970.1| - 7.9e-14 51.6 0.0 1.6e-13 50.6 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|289582504|ref|YP_003480970.1| - 5e-07 29.7 0.0 8.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|289582504|ref|YP_003480970.1| - 0.00012 22.5 0.0 0.0002 21.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.11 gi|289582504|ref|YP_003480970.1| - 0.0011 18.2 0.6 1.5 8.0 0.1 2.6 1 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|289582504|ref|YP_003480970.1| - 0.0069 15.5 0.8 6.8 5.7 0.0 3.3 2 1 1 4 4 4 2 Glycosyl Hydrolase Family 88 RTP1_C1 PF10363.9 gi|289582504|ref|YP_003480970.1| - 0.049 13.8 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 C5-epim_C PF06662.13 gi|289582504|ref|YP_003480970.1| - 0.19 11.2 0.3 4.9 6.6 0.0 2.7 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus FxsA PF04186.13 gi|289582505|ref|YP_003480971.1| - 4.3e-30 104.1 9.7 6.1e-30 103.6 9.7 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Phage_holin_3_6 PF07332.11 gi|289582505|ref|YP_003480971.1| - 1.7 8.7 10.3 15 5.6 6.3 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III CARDB PF07705.11 gi|289582506|ref|YP_003480972.1| - 4.7e-11 42.9 15.9 0.0048 17.1 0.7 5.6 5 0 0 5 5 5 3 CARDB DUF756 PF05506.12 gi|289582506|ref|YP_003480972.1| - 0.028 15.3 1.0 0.86 10.6 0.1 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF756) Hva1_TUDOR PF11160.8 gi|289582506|ref|YP_003480972.1| - 0.075 13.2 1.7 2.1 8.6 0.2 3.5 2 0 0 2 2 2 0 Hypervirulence associated proteins TUDOR domain HEAT_2 PF13646.6 gi|289582508|ref|YP_003480974.1| - 7e-49 164.2 25.2 5e-13 49.2 1.0 5.5 2 1 4 6 6 6 6 HEAT repeats HEAT PF02985.22 gi|289582508|ref|YP_003480974.1| - 2.1e-25 86.6 7.8 0.0061 16.7 0.1 9.7 10 0 0 10 10 10 6 HEAT repeat HEAT_PBS PF03130.16 gi|289582508|ref|YP_003480974.1| - 2.3e-22 77.4 28.3 0.00017 21.9 0.3 10.2 9 1 0 9 9 9 6 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|289582508|ref|YP_003480974.1| - 8.1e-21 74.1 17.8 0.00057 20.3 0.0 7.8 7 1 0 7 7 7 4 HEAT-like repeat Arm PF00514.23 gi|289582508|ref|YP_003480974.1| - 7.2e-13 48.1 0.7 0.018 15.0 0.0 7.1 7 2 1 8 8 8 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|289582508|ref|YP_003480974.1| - 2.1e-07 29.9 0.1 0.033 12.8 0.1 4.8 2 2 3 5 5 5 2 Adaptin N terminal region Cnd1 PF12717.7 gi|289582508|ref|YP_003480974.1| - 2.3e-07 31.0 2.4 0.013 15.6 0.1 4.4 2 2 2 5 5 5 2 non-SMC mitotic condensation complex subunit 1 RasGEF_N_2 PF14663.6 gi|289582508|ref|YP_003480974.1| - 0.0021 18.4 0.4 6.1 7.3 0.0 4.3 3 1 2 5 5 5 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain Cnd3 PF12719.7 gi|289582508|ref|YP_003480974.1| - 0.0028 16.9 0.0 0.051 12.8 0.0 2.3 1 1 1 2 2 2 1 Nuclear condensing complex subunits, C-term domain Proteasom_PSMB PF10508.9 gi|289582508|ref|YP_003480974.1| - 0.0076 14.8 0.2 2.5 6.5 0.0 3.2 2 2 1 3 3 3 1 Proteasome non-ATPase 26S subunit RICTOR_N PF14664.6 gi|289582508|ref|YP_003480974.1| - 0.019 14.0 1.4 1 8.3 0.1 2.8 2 1 1 3 3 3 0 Rapamycin-insensitive companion of mTOR, N-term ALF PF03752.13 gi|289582508|ref|YP_003480974.1| - 0.066 13.2 7.6 0.34 10.9 0.4 4.2 4 0 0 4 4 3 0 Short repeats of unknown function CLASP_N PF12348.8 gi|289582508|ref|YP_003480974.1| - 0.072 12.7 0.3 2.5 7.6 0.0 2.9 4 0 0 4 4 4 0 CLASP N terminal Catalase-rel PF06628.12 gi|289582508|ref|YP_003480974.1| - 0.073 13.3 0.1 57 4.0 0.0 4.1 4 0 0 4 4 4 0 Catalase-related immune-responsive Vac14_Fab1_bd PF12755.7 gi|289582508|ref|YP_003480974.1| - 0.12 13.0 0.0 69 4.1 0.0 3.7 3 0 0 3 3 3 0 Vacuolar 14 Fab1-binding region Dopey_N PF04118.14 gi|289582508|ref|YP_003480974.1| - 0.22 10.6 0.0 0.48 9.5 0.0 1.5 1 0 0 1 1 1 0 Dopey, N-terminal UPF0147 PF03685.13 gi|289582508|ref|YP_003480974.1| - 5.6 7.1 8.8 2.1 8.5 0.6 4.0 4 1 1 5 5 5 0 Uncharacterised protein family (UPF0147) CheF-arch PF04283.12 gi|289582509|ref|YP_003480975.1| - 3.5e-72 242.7 2.8 4.7e-72 242.3 2.8 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Vps36_ESCRT-II PF11605.8 gi|289582509|ref|YP_003480975.1| - 0.013 15.7 0.1 0.036 14.2 0.1 1.8 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 bPH_3 PF14470.6 gi|289582509|ref|YP_003480975.1| - 0.11 12.9 0.1 0.25 11.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial PH domain DUF2197 PF09963.9 gi|289582510|ref|YP_003480976.1| - 0.02 15.1 0.8 0.026 14.8 0.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_12 PF11331.8 gi|289582510|ref|YP_003480976.1| - 0.12 12.2 0.1 13 5.7 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain Arch_flagellin PF01917.16 gi|289582511|ref|YP_003480977.1| - 1.6e-42 145.5 6.3 1.9e-42 145.3 6.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Pilin_N PF07790.11 gi|289582511|ref|YP_003480977.1| - 0.23 12.4 3.7 0.76 10.7 3.7 2.2 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|289582512|ref|YP_003480978.1| - 2.3e-51 174.2 9.1 3.2e-51 173.8 9.1 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|289582513|ref|YP_003480979.1| - 2.2e-31 109.3 32.3 9.8e-23 81.1 19.1 2.8 2 1 0 2 2 2 2 Archaebacterial flagellin PTS-HPr PF00381.19 gi|289582513|ref|YP_003480979.1| - 0.13 12.5 0.4 0.33 11.2 0.4 1.7 1 0 0 1 1 1 0 PTS HPr component phosphorylation site Pilin_N PF07790.11 gi|289582513|ref|YP_003480979.1| - 0.31 12.0 9.4 0.15 13.0 1.9 3.7 3 2 1 4 4 4 0 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|289582514|ref|YP_003480980.1| - 2e-44 151.7 7.0 2.9e-44 151.2 7.0 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|289582515|ref|YP_003480981.1| - 2.5e-08 34.3 7.4 3e-08 34.0 7.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF948 PF06103.11 gi|289582515|ref|YP_003480981.1| - 0.11 12.8 0.6 0.17 12.2 0.6 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Neurensin PF14927.6 gi|289582515|ref|YP_003480981.1| - 0.2 11.3 0.2 0.34 10.6 0.2 1.3 1 0 0 1 1 1 0 Neurensin Arch_flagellin PF01917.16 gi|289582516|ref|YP_003480982.1| - 6e-15 55.8 12.8 6.9e-15 55.6 12.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin GP63 PF17471.2 gi|289582516|ref|YP_003480982.1| - 0.04 14.1 0.0 0.092 12.9 0.0 1.6 1 1 1 2 2 2 0 Gene product 63 Invasin_D3 PF09134.10 gi|289582516|ref|YP_003480982.1| - 0.16 12.3 4.6 1.5 9.2 0.1 2.4 1 1 0 2 2 2 0 Invasin, domain 3 DUF4969 PF16339.5 gi|289582516|ref|YP_003480982.1| - 0.8 10.1 3.2 5.8 7.3 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4969) Arch_fla_DE PF04659.13 gi|289582517|ref|YP_003480983.1| - 3.5e-25 87.7 0.0 6.5e-25 86.8 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|289582517|ref|YP_003480983.1| - 2.1e-19 69.6 3.6 4.4e-19 68.6 3.6 1.6 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|289582517|ref|YP_003480983.1| - 0.0082 16.0 0.7 0.019 14.8 0.3 1.8 1 1 0 1 1 1 1 Heat shock factor binding protein 1 Tektin PF03148.14 gi|289582517|ref|YP_003480983.1| - 0.044 12.5 0.3 0.064 12.0 0.3 1.1 1 0 0 1 1 1 0 Tektin family bZIP_1 PF00170.21 gi|289582517|ref|YP_003480983.1| - 0.046 13.8 0.1 0.082 13.0 0.1 1.3 1 0 0 1 1 1 0 bZIP transcription factor DUF1664 PF07889.12 gi|289582517|ref|YP_003480983.1| - 0.23 11.5 0.7 0.41 10.7 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) CENP-Q PF13094.6 gi|289582517|ref|YP_003480983.1| - 0.27 11.4 0.1 0.27 11.4 0.1 1.8 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit T2SSF PF00482.23 gi|289582518|ref|YP_003480984.1| - 5.1e-18 65.2 6.8 1.2e-11 44.6 0.3 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F PAT1 PF09770.9 gi|289582520|ref|YP_003480986.1| - 0.12 10.6 10.2 0.12 10.6 10.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 RRN3 PF05327.11 gi|289582520|ref|YP_003480986.1| - 0.15 10.6 1.1 0.19 10.3 1.1 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 SRP-alpha_N PF04086.13 gi|289582520|ref|YP_003480986.1| - 1.6 8.6 11.0 2.3 8.1 11.0 1.3 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal Endostatin PF06482.11 gi|289582520|ref|YP_003480986.1| - 1.6 8.1 7.8 2.4 7.6 7.8 1.3 1 0 0 1 1 1 0 Collagenase NC10 and Endostatin eIF-3_zeta PF05091.12 gi|289582520|ref|YP_003480986.1| - 2.4 7.0 6.9 3.1 6.7 6.9 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Neur_chan_memb PF02932.16 gi|289582520|ref|YP_003480986.1| - 2.8 7.9 3.6 3.9 7.5 3.6 1.3 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region SPX PF03105.19 gi|289582520|ref|YP_003480986.1| - 3 7.7 14.3 3.6 7.4 14.3 1.2 1 0 0 1 1 1 0 SPX domain Zip PF02535.22 gi|289582520|ref|YP_003480986.1| - 4.5 6.4 4.8 5.5 6.1 4.8 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Raftlin PF15250.6 gi|289582520|ref|YP_003480986.1| - 7.6 5.2 9.4 9.7 4.8 9.4 1.1 1 0 0 1 1 1 0 Raftlin Arch_fla_DE PF04659.13 gi|289582521|ref|YP_003480987.1| - 3.7e-26 90.8 0.0 9.6e-26 89.5 0.0 1.8 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|289582521|ref|YP_003480987.1| - 1.2e-20 73.6 3.2 2.4e-20 72.7 3.2 1.6 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) UreE_C PF05194.12 gi|289582521|ref|YP_003480987.1| - 0.01 16.3 7.2 0.031 14.7 5.2 2.6 2 0 0 2 2 2 0 UreE urease accessory protein, C-terminal domain BLOC1_2 PF10046.9 gi|289582521|ref|YP_003480987.1| - 0.042 14.2 1.0 0.082 13.2 1.0 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|289582521|ref|YP_003480987.1| - 0.18 11.6 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Sec34-like family XhlA PF10779.9 gi|289582521|ref|YP_003480987.1| - 0.24 11.6 1.0 0.53 10.5 1.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA CENP-F_leu_zip PF10473.9 gi|289582521|ref|YP_003480987.1| - 1.9 8.5 4.1 0.33 11.0 0.2 1.6 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Dicty_REP PF05086.12 gi|289582521|ref|YP_003480987.1| - 7.2 4.4 6.1 15 3.4 6.1 1.4 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein ATPase PF06745.13 gi|289582522|ref|YP_003480988.1| - 1.3e-14 54.1 0.2 2e-14 53.5 0.2 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|289582522|ref|YP_003480988.1| - 3.1e-05 23.6 0.0 5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|289582522|ref|YP_003480988.1| - 0.0004 20.4 0.2 0.0023 17.9 0.2 2.2 1 1 0 1 1 1 1 NACHT domain TsaE PF02367.17 gi|289582522|ref|YP_003480988.1| - 0.00098 19.1 0.0 0.01 15.8 0.0 2.1 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad51 PF08423.11 gi|289582522|ref|YP_003480988.1| - 0.00099 18.4 0.9 0.0054 16.0 0.9 1.9 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.6 gi|289582522|ref|YP_003480988.1| - 0.0027 18.0 0.1 0.0052 17.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|289582522|ref|YP_003480988.1| - 0.0088 15.2 0.0 2.6 7.1 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein TIP49 PF06068.13 gi|289582522|ref|YP_003480988.1| - 0.014 14.6 0.1 3.9 6.6 0.0 2.4 2 1 1 3 3 3 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|289582522|ref|YP_003480988.1| - 0.092 12.5 0.1 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|289582522|ref|YP_003480988.1| - 0.12 12.7 0.2 0.26 11.7 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain FF PF01846.19 gi|289582522|ref|YP_003480988.1| - 0.13 12.4 0.1 0.29 11.4 0.1 1.7 1 1 0 1 1 1 0 FF domain T2SSE PF00437.20 gi|289582523|ref|YP_003480989.1| - 5.5e-43 147.0 0.0 1.9e-42 145.3 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|289582523|ref|YP_003480989.1| - 6.7e-06 26.6 0.0 0.00011 22.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 gi|289582523|ref|YP_003480989.1| - 0.0055 16.5 0.0 0.77 9.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_7 PF12775.7 gi|289582523|ref|YP_003480989.1| - 0.0087 15.6 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|289582523|ref|YP_003480989.1| - 0.015 15.6 0.0 0.074 13.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|289582523|ref|YP_003480989.1| - 0.018 14.8 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|289582523|ref|YP_003480989.1| - 0.024 15.2 0.0 0.1 13.1 0.0 2.0 2 0 0 2 2 2 0 ABC transporter Dynamin_N PF00350.23 gi|289582523|ref|YP_003480989.1| - 0.03 14.4 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 Dynamin family AIG1 PF04548.16 gi|289582523|ref|YP_003480989.1| - 0.092 12.1 0.0 0.22 10.9 0.0 1.6 1 0 0 1 1 1 0 AIG1 family CheF-arch PF04283.12 gi|289582524|ref|YP_003480990.1| - 1.9e-65 220.6 0.7 3.2e-65 219.9 0.7 1.4 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea CheC PF04509.12 gi|289582525|ref|YP_003480991.1| - 1.3e-20 73.0 0.5 3.8e-10 39.5 0.0 3.2 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|289582525|ref|YP_003480991.1| - 7.1e-15 55.0 0.1 4.9e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.24 gi|289582526|ref|YP_003480992.1| - 2.3e-29 101.8 1.2 2.5e-29 101.7 1.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheR PF01739.18 gi|289582527|ref|YP_003480993.1| - 3.6e-44 150.6 0.0 4.4e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|289582527|ref|YP_003480993.1| - 5.8e-14 51.5 1.3 5.8e-14 51.5 1.3 2.9 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|289582527|ref|YP_003480993.1| - 0.00017 22.2 0.1 0.0057 17.4 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289582527|ref|YP_003480993.1| - 0.0031 18.2 0.0 0.56 10.9 0.0 2.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582527|ref|YP_003480993.1| - 0.015 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NT5C PF06941.12 gi|289582527|ref|YP_003480993.1| - 0.024 14.5 0.0 0.061 13.2 0.0 1.6 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Acetyltransf_6 PF13480.7 gi|289582527|ref|YP_003480993.1| - 0.033 14.4 0.2 0.083 13.0 0.2 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Methyltransf_11 PF08241.12 gi|289582527|ref|YP_003480993.1| - 0.13 12.9 0.0 1.1 10.0 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain Bac_rhodopsin PF01036.18 gi|289582528|ref|YP_003480994.1| - 3.9e-25 88.7 20.6 4.7e-25 88.5 20.6 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Claudin_3 PF06653.11 gi|289582528|ref|YP_003480994.1| - 0.14 12.1 2.3 1.4 8.8 0.3 2.3 2 0 0 2 2 2 0 Tight junction protein, Claudin-like DUF4044 PF13253.6 gi|289582528|ref|YP_003480994.1| - 9.7 5.8 7.4 1.3 8.6 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) MCPsignal PF00015.21 gi|289582529|ref|YP_003480995.1| - 1.1e-38 132.8 25.2 1.1e-38 132.8 25.2 5.3 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|289582529|ref|YP_003480995.1| - 8.1e-16 58.1 12.7 2.3e-10 40.7 0.2 5.8 4 1 0 4 4 4 2 HAMP domain DUF1664 PF07889.12 gi|289582529|ref|YP_003480995.1| - 0.00018 21.6 42.9 0.18 11.8 3.9 5.5 1 1 4 6 6 6 4 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|289582529|ref|YP_003480995.1| - 0.00058 20.1 58.7 0.099 12.9 0.9 7.6 2 1 7 9 9 8 5 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|289582529|ref|YP_003480995.1| - 0.0014 18.6 47.9 0.01 15.9 4.0 5.6 1 1 4 6 6 6 4 Laminin Domain II DUF4201 PF13870.6 gi|289582529|ref|YP_003480995.1| - 0.0026 17.5 12.4 0.49 10.1 4.8 3.6 3 1 0 3 3 3 2 Domain of unknown function (DUF4201) BLOC1_2 PF10046.9 gi|289582529|ref|YP_003480995.1| - 0.0086 16.4 38.9 0.098 13.0 2.1 6.1 3 2 2 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Htr2 PF17909.1 gi|289582529|ref|YP_003480995.1| - 0.012 15.8 8.5 0.012 15.8 8.5 3.5 4 0 0 4 4 1 0 Htr2 transmembrane domain DUF2779 PF11074.8 gi|289582529|ref|YP_003480995.1| - 0.043 14.3 3.8 0.42 11.1 0.0 3.1 4 0 0 4 4 2 0 Domain of unknown function(DUF2779) ATG16 PF08614.11 gi|289582529|ref|YP_003480995.1| - 0.045 14.0 52.1 0.14 12.4 4.8 4.4 2 1 2 4 4 4 0 Autophagy protein 16 (ATG16) DUF2203 PF09969.9 gi|289582529|ref|YP_003480995.1| - 0.055 14.2 35.0 1.8 9.3 0.3 5.7 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fib_alpha PF08702.10 gi|289582529|ref|YP_003480995.1| - 0.058 13.6 31.2 0.058 13.6 4.8 4.9 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|289582529|ref|YP_003480995.1| - 0.082 11.8 51.0 0.65 8.8 12.9 3.9 1 1 4 5 5 5 0 Spc7 kinetochore protein HOOK PF05622.12 gi|289582529|ref|YP_003480995.1| - 0.11 10.6 45.1 0.055 11.6 15.3 2.8 1 1 2 3 3 3 0 HOOK protein RPW8 PF05659.11 gi|289582529|ref|YP_003480995.1| - 0.16 11.7 14.6 24 4.6 0.0 5.4 3 1 2 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 NPV_P10 PF05531.12 gi|289582529|ref|YP_003480995.1| - 0.29 11.6 45.7 0.081 13.4 7.5 6.7 3 2 4 7 7 7 0 Nucleopolyhedrovirus P10 protein Halogen_Hydrol PF10112.9 gi|289582529|ref|YP_003480995.1| - 0.38 10.7 10.3 0.68 9.9 1.4 3.3 3 1 0 3 3 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein MAD PF05557.13 gi|289582529|ref|YP_003480995.1| - 0.51 8.6 43.3 0.047 12.0 8.3 2.8 1 1 1 2 2 2 0 Mitotic checkpoint protein Atg14 PF10186.9 gi|289582529|ref|YP_003480995.1| - 0.54 9.3 27.8 4.4 6.3 6.1 3.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Mce4_CUP1 PF11887.8 gi|289582529|ref|YP_003480995.1| - 0.65 9.4 37.6 0.22 11.0 7.8 4.4 2 1 3 5 5 5 0 Cholesterol uptake porter CUP1 of Mce4, putative Prominin PF05478.11 gi|289582529|ref|YP_003480995.1| - 0.66 7.9 25.7 2 6.3 0.8 3.4 1 1 2 3 3 3 0 Prominin TACC_C PF05010.14 gi|289582529|ref|YP_003480995.1| - 0.68 9.7 29.4 0.28 11.0 5.0 3.5 3 0 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Sec34 PF04136.15 gi|289582529|ref|YP_003480995.1| - 1.4 8.7 35.8 1.5 8.7 1.6 6.4 3 3 3 6 6 6 0 Sec34-like family AAA_13 PF13166.6 gi|289582529|ref|YP_003480995.1| - 2.1 6.9 42.0 6.8 5.2 8.7 3.2 1 1 1 2 2 2 0 AAA domain Fez1 PF06818.15 gi|289582529|ref|YP_003480995.1| - 2.2 8.7 43.0 0.068 13.6 8.0 3.2 1 1 1 3 3 3 0 Fez1 Mod_r PF07200.13 gi|289582529|ref|YP_003480995.1| - 3.4 7.8 43.6 2.8 8.0 7.1 4.6 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein DUF724 PF05266.14 gi|289582529|ref|YP_003480995.1| - 4.3 7.1 29.1 0.58 10.0 4.8 3.9 2 1 3 5 5 5 0 Protein of unknown function (DUF724) PhageMin_Tail PF10145.9 gi|289582529|ref|YP_003480995.1| - 4.7 7.0 50.3 0.031 14.1 26.5 3.5 1 1 2 3 3 3 0 Phage-related minor tail protein LMBR1 PF04791.16 gi|289582529|ref|YP_003480995.1| - 4.9 5.9 20.9 3.4e+03 -3.4 20.9 2.5 1 1 0 1 1 1 0 LMBR1-like membrane protein IFT57 PF10498.9 gi|289582529|ref|YP_003480995.1| - 5.9 5.7 42.2 0.21 10.5 0.5 4.7 2 2 3 5 5 5 0 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.22 gi|289582529|ref|YP_003480995.1| - 7.3 6.9 38.6 3.9 7.7 6.4 5.3 2 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|289582529|ref|YP_003480995.1| - 7.5 5.8 34.6 4 6.7 3.3 4.4 1 1 2 4 4 4 0 Growth-arrest specific micro-tubule binding FlaC_arch PF05377.11 gi|289582529|ref|YP_003480995.1| - 7.9 7.0 34.7 0.54 10.7 0.3 7.4 6 2 1 7 7 7 0 Flagella accessory protein C (FlaC) HMMR_N PF15905.5 gi|289582529|ref|YP_003480995.1| - 8.1 5.8 40.2 0.49 9.8 6.2 3.2 2 1 1 3 3 3 0 Hyaluronan mediated motility receptor N-terminal ADIP PF11559.8 gi|289582529|ref|YP_003480995.1| - 8.9 6.4 35.5 0.97 9.5 3.4 4.4 3 2 2 5 5 5 0 Afadin- and alpha -actinin-Binding Bac_rhodopsin PF01036.18 gi|289582530|ref|YP_003480996.1| - 1.5e-26 93.4 20.0 1.7e-26 93.2 20.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein EI24 PF07264.11 gi|289582530|ref|YP_003480996.1| - 4.4 7.5 14.6 55 3.9 14.6 2.1 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) MCPsignal PF00015.21 gi|289582531|ref|YP_003480997.1| - 1.8e-47 161.3 49.6 4.6e-46 156.8 26.5 4.1 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|289582531|ref|YP_003480997.1| - 1.4e-27 96.6 3.0 2.5e-27 95.7 0.6 2.6 2 1 0 2 2 1 1 Protoglobin DUF948 PF06103.11 gi|289582531|ref|YP_003480997.1| - 0.0025 18.0 35.0 0.022 15.0 3.9 5.1 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|289582531|ref|YP_003480997.1| - 0.0068 16.4 32.3 1.1 9.3 3.9 4.5 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|289582531|ref|YP_003480997.1| - 0.0077 15.1 31.4 0.043 12.7 10.4 2.7 3 0 0 3 3 3 2 Spc7 kinetochore protein ING PF12998.7 gi|289582531|ref|YP_003480997.1| - 0.011 16.4 10.1 0.012 16.2 0.2 3.8 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Laminin_II PF06009.12 gi|289582531|ref|YP_003480997.1| - 0.031 14.3 36.5 0.43 10.6 2.2 5.0 3 2 2 5 5 5 0 Laminin Domain II DHR10 PF18595.1 gi|289582531|ref|YP_003480997.1| - 0.037 14.1 0.9 0.037 14.1 0.9 5.9 3 1 1 6 6 5 0 Designed helical repeat protein 10 domain DASH_Duo1 PF08651.10 gi|289582531|ref|YP_003480997.1| - 0.11 12.3 8.3 3 7.7 0.3 4.7 3 2 1 4 4 4 0 DASH complex subunit Duo1 BLOC1_2 PF10046.9 gi|289582531|ref|YP_003480997.1| - 0.12 12.7 33.9 0.15 12.4 0.9 5.7 3 2 1 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.11 gi|289582531|ref|YP_003480997.1| - 0.21 12.2 30.9 0.45 11.1 3.4 5.2 4 2 2 6 6 5 0 Syntaxin 6, N-terminal KxDL PF10241.9 gi|289582531|ref|YP_003480997.1| - 0.22 11.8 4.6 24 5.3 0.1 4.5 3 1 2 5 5 5 0 Uncharacterized conserved protein Fib_alpha PF08702.10 gi|289582531|ref|YP_003480997.1| - 0.51 10.5 24.9 0.35 11.0 3.0 4.2 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family FlgN PF05130.12 gi|289582531|ref|YP_003480997.1| - 0.66 10.5 22.9 0.063 13.8 3.5 3.4 2 1 2 4 4 4 0 FlgN protein Syntaxin_2 PF14523.6 gi|289582531|ref|YP_003480997.1| - 1.1 9.6 14.7 5.6 7.4 1.8 4.5 1 1 1 3 3 3 0 Syntaxin-like protein DASH_Dad2 PF08654.10 gi|289582531|ref|YP_003480997.1| - 1.3 9.5 21.7 0.43 11.0 5.7 4.5 1 1 3 4 4 4 0 DASH complex subunit Dad2 Mce4_CUP1 PF11887.8 gi|289582531|ref|YP_003480997.1| - 1.4 8.3 14.0 2.2 7.7 4.1 3.1 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Mod_r PF07200.13 gi|289582531|ref|YP_003480997.1| - 1.4 9.0 24.5 0.14 12.3 1.3 3.5 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein FUSC PF04632.12 gi|289582531|ref|YP_003480997.1| - 1.6 7.1 8.4 13 4.2 8.4 2.2 1 1 0 1 1 1 0 Fusaric acid resistance protein family ApoO PF09769.9 gi|289582531|ref|YP_003480997.1| - 1.7 8.6 3.4 13 5.8 0.1 3.2 2 2 1 4 4 4 0 Apolipoprotein O NPV_P10 PF05531.12 gi|289582531|ref|YP_003480997.1| - 2.4 8.7 32.7 3.7 8.1 5.7 6.4 3 2 4 7 7 7 0 Nucleopolyhedrovirus P10 protein DUF812 PF05667.11 gi|289582531|ref|YP_003480997.1| - 4.7 6.0 34.4 0.2 10.5 11.5 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF812) DASH_Dam1 PF08653.10 gi|289582531|ref|YP_003480997.1| - 5 7.0 5.1 21 5.0 0.1 4.2 4 1 1 5 5 5 0 DASH complex subunit Dam1 TBCC_N PF16752.5 gi|289582531|ref|YP_003480997.1| - 5 7.6 24.0 2.2 8.8 0.5 4.7 3 1 1 4 4 4 0 Tubulin-specific chaperone C N-terminal domain UPF0242 PF06785.11 gi|289582531|ref|YP_003480997.1| - 7.3 6.7 26.4 0.18 11.9 1.9 3.6 1 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|289582531|ref|YP_003480997.1| - 7.7 6.9 24.3 22 5.4 10.4 2.8 1 1 1 2 2 2 0 Fez1 BORCS7 PF16088.5 gi|289582531|ref|YP_003480997.1| - 8 6.8 18.0 0.47 10.7 0.5 4.2 3 1 0 4 4 4 0 BLOC-1-related complex sub-unit 7 DUF3450 PF11932.8 gi|289582531|ref|YP_003480997.1| - 9.5 5.4 35.8 1.2 8.4 9.6 4.9 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) CheW PF01584.19 gi|289582532|ref|YP_003480998.1| - 6.7e-25 87.3 0.1 8.3e-25 87.0 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain MGC-24 PF05283.11 gi|289582532|ref|YP_003480998.1| - 7.5 7.0 8.5 11 6.4 8.5 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin MCPsignal PF00015.21 gi|289582533|ref|YP_003480999.1| - 2.6e-46 157.6 59.7 5.5e-46 156.5 27.1 4.2 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|289582533|ref|YP_003480999.1| - 1.2e-05 25.5 38.6 0.017 15.3 2.2 4.6 2 2 1 4 4 4 3 Bacterial protein of unknown function (DUF948) Protoglobin PF11563.8 gi|289582533|ref|YP_003480999.1| - 0.0014 18.5 0.0 0.015 15.2 0.0 2.8 2 1 0 2 2 1 1 Protoglobin DUF812 PF05667.11 gi|289582533|ref|YP_003480999.1| - 0.0041 16.1 34.1 0.058 12.3 17.0 2.5 3 0 0 3 3 3 2 Protein of unknown function (DUF812) Syntaxin_2 PF14523.6 gi|289582533|ref|YP_003480999.1| - 0.0047 17.3 18.2 0.66 10.4 1.2 5.0 1 1 2 3 3 3 1 Syntaxin-like protein DUF1664 PF07889.12 gi|289582533|ref|YP_003480999.1| - 0.022 14.8 34.5 0.29 11.2 2.5 5.0 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|289582533|ref|YP_003480999.1| - 0.037 14.0 40.5 0.046 13.7 9.3 5.1 3 2 3 6 6 6 0 Laminin Domain II LPP PF04728.13 gi|289582533|ref|YP_003480999.1| - 0.048 14.1 0.7 0.048 14.1 0.7 7.4 8 1 1 9 9 8 0 Lipoprotein leucine-zipper BLOC1_2 PF10046.9 gi|289582533|ref|YP_003480999.1| - 0.1 12.9 28.5 0.79 10.1 1.1 4.8 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vac_Fusion PF02346.16 gi|289582533|ref|YP_003480999.1| - 0.49 10.0 3.1 2 8.1 0.1 3.3 3 1 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 DASH_Duo1 PF08651.10 gi|289582533|ref|YP_003480999.1| - 1 9.2 14.4 2.7 7.8 0.1 4.9 2 2 2 5 5 5 0 DASH complex subunit Duo1 RecG_N PF17190.4 gi|289582533|ref|YP_003480999.1| - 1.5 9.6 14.3 24 5.7 0.2 5.1 2 2 1 5 5 5 0 RecG N-terminal helical domain DASH_Dad4 PF08650.10 gi|289582533|ref|YP_003480999.1| - 1.7 8.7 8.6 29 4.7 0.1 4.1 3 1 1 4 4 4 0 DASH complex subunit Dad4 EzrA PF06160.12 gi|289582533|ref|YP_003480999.1| - 1.8 6.7 31.3 1.1 7.4 9.3 2.6 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA Prominin PF05478.11 gi|289582533|ref|YP_003480999.1| - 1.8 6.4 21.6 1.9 6.4 12.0 2.3 1 1 2 3 3 3 0 Prominin DASH_Dam1 PF08653.10 gi|289582533|ref|YP_003480999.1| - 3 7.7 8.7 17 5.3 0.1 4.6 4 2 2 6 6 6 0 DASH complex subunit Dam1 Fib_alpha PF08702.10 gi|289582533|ref|YP_003480999.1| - 3.5 7.8 30.1 0.37 11.0 3.0 4.8 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Atg14 PF10186.9 gi|289582533|ref|YP_003480999.1| - 3.6 6.6 22.1 2.4 7.1 2.7 3.5 2 1 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|289582533|ref|YP_003480999.1| - 4.1 6.2 40.6 0.52 9.1 9.0 3.6 3 1 0 3 3 3 0 Spc7 kinetochore protein Sec34 PF04136.15 gi|289582533|ref|YP_003480999.1| - 4.2 7.2 18.8 7.9 6.3 1.9 4.3 2 2 2 4 4 4 0 Sec34-like family CheW PF01584.19 gi|289582534|ref|YP_003481000.1| - 2.4e-23 82.3 0.1 3.3e-23 81.8 0.1 1.2 1 0 0 1 1 1 1 CheW-like domain AAA_31 PF13614.6 gi|289582535|ref|YP_003481001.1| - 6.5e-38 130.4 0.0 9.4e-38 129.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|289582535|ref|YP_003481001.1| - 1.2e-20 73.8 0.0 2.4e-20 72.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|289582535|ref|YP_003481001.1| - 1.3e-08 34.6 0.2 7.6e-08 32.1 0.1 2.0 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|289582535|ref|YP_003481001.1| - 1.3e-07 31.4 0.0 0.00013 21.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|289582535|ref|YP_003481001.1| - 2.1e-07 30.5 0.7 2.1e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|289582535|ref|YP_003481001.1| - 2.5e-06 26.9 0.1 1.4e-05 24.5 0.1 2.0 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|289582535|ref|YP_003481001.1| - 5e-06 26.2 0.1 1.4e-05 24.7 0.1 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|289582535|ref|YP_003481001.1| - 0.0013 18.6 0.1 0.0033 17.2 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|289582535|ref|YP_003481001.1| - 0.016 15.0 0.4 0.12 12.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein VirC1 PF07015.11 gi|289582535|ref|YP_003481001.1| - 0.083 12.2 0.5 0.76 9.0 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 gi|289582535|ref|YP_003481001.1| - 0.095 12.3 0.6 0.62 9.6 0.6 2.3 1 1 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|289582535|ref|YP_003481001.1| - 0.11 10.7 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Thymidylate_kin PF02223.17 gi|289582535|ref|YP_003481001.1| - 0.13 11.9 0.2 2.7 7.6 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase CheB_methylest PF01339.17 gi|289582536|ref|YP_003481002.1| - 3.4e-53 179.9 0.2 6.9e-53 178.9 0.2 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|289582536|ref|YP_003481002.1| - 2.1e-23 82.6 0.2 4.7e-23 81.5 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain DUF2023 PF09633.10 gi|289582536|ref|YP_003481002.1| - 0.016 15.4 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2023) CheW PF01584.19 gi|289582537|ref|YP_003481003.1| - 6.4e-22 77.7 0.4 1.5e-21 76.5 0.4 1.7 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|289582537|ref|YP_003481003.1| - 2.6e-18 66.1 0.1 7.3e-18 64.6 0.1 1.8 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|289582537|ref|YP_003481003.1| - 7e-18 65.2 0.2 7e-18 65.2 0.2 2.9 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|289582537|ref|YP_003481003.1| - 4.3e-07 30.2 2.5 1.7e-06 28.3 2.5 2.1 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.11 gi|289582537|ref|YP_003481003.1| - 3.1e-05 23.9 1.2 0.00014 21.8 0.0 2.9 3 0 0 3 3 3 1 P2 response regulator binding domain HATPase_c_3 PF13589.6 gi|289582537|ref|YP_003481003.1| - 0.021 14.6 1.6 0.063 13.1 0.0 2.5 3 0 0 3 3 3 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|289582537|ref|YP_003481003.1| - 0.064 13.2 0.8 0.8 9.7 0.1 2.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain CheD PF03975.13 gi|289582538|ref|YP_003481004.1| - 3.1e-26 91.6 0.0 4.3e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Pro_Al_protease PF02983.14 gi|289582538|ref|YP_003481004.1| - 0.053 13.6 0.5 0.27 11.3 0.0 2.3 2 0 0 2 2 2 0 Alpha-lytic protease prodomain ATPase PF06745.13 gi|289582539|ref|YP_003481005.1| - 1.1e-39 136.2 0.0 1.2e-39 136.0 0.0 1.0 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|289582539|ref|YP_003481005.1| - 3.7e-07 29.7 0.0 4.8e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|289582539|ref|YP_003481005.1| - 4.4e-07 28.9 0.1 1.2e-06 27.4 0.1 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|289582539|ref|YP_003481005.1| - 1.9e-05 24.3 0.0 5.8e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|289582539|ref|YP_003481005.1| - 9.7e-05 22.8 0.1 0.00081 19.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|289582539|ref|YP_003481005.1| - 0.00011 22.1 0.1 0.00094 19.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|289582539|ref|YP_003481005.1| - 0.00045 20.5 0.2 0.0012 19.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|289582539|ref|YP_003481005.1| - 0.00049 20.1 0.0 0.00077 19.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|289582539|ref|YP_003481005.1| - 0.00061 20.1 0.0 0.025 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|289582539|ref|YP_003481005.1| - 0.001 19.6 0.1 0.0017 18.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289582539|ref|YP_003481005.1| - 0.002 18.6 0.1 0.0038 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|289582539|ref|YP_003481005.1| - 0.0037 17.4 0.0 0.0063 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|289582539|ref|YP_003481005.1| - 0.0037 17.0 0.0 0.0084 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|289582539|ref|YP_003481005.1| - 0.0045 16.7 0.0 0.0072 16.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|289582539|ref|YP_003481005.1| - 0.0069 16.2 0.9 0.018 14.9 0.1 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|289582539|ref|YP_003481005.1| - 0.01 15.4 0.0 0.23 11.0 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|289582539|ref|YP_003481005.1| - 0.018 14.9 0.0 0.026 14.4 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|289582539|ref|YP_003481005.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|289582539|ref|YP_003481005.1| - 0.023 13.9 0.1 0.055 12.7 0.1 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|289582539|ref|YP_003481005.1| - 0.032 13.5 0.0 0.069 12.4 0.0 1.5 1 0 0 1 1 1 0 Rad51 DEAD PF00270.29 gi|289582539|ref|YP_003481005.1| - 0.041 13.7 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase T2SSE PF00437.20 gi|289582539|ref|YP_003481005.1| - 0.049 12.7 0.0 0.078 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|289582539|ref|YP_003481005.1| - 0.052 13.9 0.0 0.093 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|289582539|ref|YP_003481005.1| - 0.052 13.5 0.2 0.13 12.2 0.2 2.0 1 1 0 1 1 1 0 NTPase AAA_17 PF13207.6 gi|289582539|ref|YP_003481005.1| - 0.061 13.8 0.3 0.12 12.8 0.3 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|289582539|ref|YP_003481005.1| - 0.066 12.9 0.1 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RecA PF00154.21 gi|289582539|ref|YP_003481005.1| - 0.13 11.7 0.8 0.62 9.5 0.0 2.4 3 1 0 3 3 3 0 recA bacterial DNA recombination protein AAA_19 PF13245.6 gi|289582539|ref|YP_003481005.1| - 0.16 12.3 0.1 0.26 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain CDC45 PF02724.14 gi|289582540|ref|YP_003481006.1| - 2.7 6.2 12.3 2.7 6.2 12.3 1.2 1 0 0 1 1 1 0 CDC45-like protein FAM176 PF14851.6 gi|289582540|ref|YP_003481006.1| - 6.8 6.3 7.3 18 4.9 7.3 1.8 1 0 0 1 1 1 0 FAM176 family Glycos_transf_3 PF00591.21 gi|289582541|ref|YP_003481007.1| - 2.1e-35 122.5 0.0 2.9e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|289582541|ref|YP_003481007.1| - 1.8e-09 37.3 0.5 3.4e-08 33.2 0.0 2.8 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain Amino_oxidase PF01593.24 gi|289582542|ref|YP_003481008.1| - 3.1e-68 231.1 1.8 3.7e-68 230.9 1.8 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|289582542|ref|YP_003481008.1| - 5.9e-16 58.4 0.8 1.4e-15 57.2 0.8 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|289582542|ref|YP_003481008.1| - 1.4e-09 38.0 10.0 2.6e-08 33.9 10.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|289582542|ref|YP_003481008.1| - 1.2e-06 28.0 0.1 1.9e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|289582542|ref|YP_003481008.1| - 5.4e-06 26.0 0.4 6.9e-06 25.7 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289582542|ref|YP_003481008.1| - 6.2e-06 25.6 5.8 1.4e-05 24.4 6.0 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289582542|ref|YP_003481008.1| - 1.7e-05 24.2 0.0 2.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|289582542|ref|YP_003481008.1| - 3.2e-05 23.4 2.5 0.0001 21.7 1.5 2.0 1 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|289582542|ref|YP_003481008.1| - 4.3e-05 22.4 0.9 0.00019 20.3 0.7 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|289582542|ref|YP_003481008.1| - 5.3e-05 23.7 0.1 0.00042 20.8 0.3 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289582542|ref|YP_003481008.1| - 0.0037 16.6 0.2 0.094 12.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|289582542|ref|YP_003481008.1| - 0.0054 15.8 2.1 0.081 12.0 0.6 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|289582542|ref|YP_003481008.1| - 0.014 14.7 0.2 0.025 13.9 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Rossmann-like PF10727.9 gi|289582542|ref|YP_003481008.1| - 0.024 14.5 1.7 0.029 14.2 0.2 1.9 2 0 0 2 2 2 0 Rossmann-like domain NAD_binding_9 PF13454.6 gi|289582542|ref|YP_003481008.1| - 0.051 13.6 0.1 0.051 13.6 0.1 2.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|289582542|ref|YP_003481008.1| - 0.07 12.2 0.8 0.11 11.5 0.8 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|289582542|ref|YP_003481008.1| - 0.095 13.0 2.1 0.27 11.5 0.1 2.5 3 1 1 4 4 4 0 TrkA-N domain AsnC_trans_reg2 PF17805.1 gi|289582543|ref|YP_003481009.1| - 1.9e-44 149.7 0.0 9.1e-23 80.2 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|289582543|ref|YP_003481009.1| - 0.0012 18.6 1.0 2 8.3 0.0 2.9 2 1 0 2 2 2 2 AsnC-type helix-turn-helix domain DUF2244 PF10003.9 gi|289582544|ref|YP_003481010.1| - 0.053 13.2 2.4 0.077 12.7 2.4 1.3 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) FAD-oxidase_C PF02913.19 gi|289582545|ref|YP_003481011.1| - 6.2e-64 216.0 0.2 8.5e-63 212.3 0.0 2.2 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|289582545|ref|YP_003481011.1| - 1.3e-39 135.1 0.1 3.2e-39 133.9 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|289582545|ref|YP_003481011.1| - 4.7e-09 36.7 4.7 9.9e-09 35.6 4.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|289582545|ref|YP_003481011.1| - 6e-09 36.2 5.5 1.4e-08 35.0 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|289582545|ref|YP_003481011.1| - 1e-08 35.2 0.0 1.7e-05 24.9 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Cytokin-bind PF09265.10 gi|289582545|ref|YP_003481011.1| - 3.4e-05 23.4 0.2 5.3e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_9 PF13187.6 gi|289582545|ref|YP_003481011.1| - 0.0023 18.0 2.6 0.1 12.8 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289582545|ref|YP_003481011.1| - 0.003 17.7 6.4 0.028 14.5 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289582545|ref|YP_003481011.1| - 0.074 13.2 4.7 0.059 13.5 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289582545|ref|YP_003481011.1| - 0.25 12.0 8.1 1.4 9.6 8.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|289582545|ref|YP_003481011.1| - 1.5 8.8 15.6 0.26 11.2 4.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|289582545|ref|YP_003481011.1| - 3.2 8.0 11.3 0.31 11.2 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|289582545|ref|YP_003481011.1| - 5 7.9 11.0 0.37 11.4 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain ECH_1 PF00378.20 gi|289582546|ref|YP_003481012.1| - 5.8e-67 225.6 0.2 6.5e-67 225.5 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289582546|ref|YP_003481012.1| - 6.5e-38 131.1 0.1 1.1e-30 107.3 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|289582547|ref|YP_003481013.1| - 2.2e-63 213.4 0.8 2.9e-63 213.0 0.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|289582547|ref|YP_003481013.1| - 4.2e-32 110.6 0.1 1.8e-31 108.6 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|289582547|ref|YP_003481013.1| - 8.6e-06 25.8 0.0 2.2e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|289582547|ref|YP_003481013.1| - 0.00026 21.2 2.6 0.00026 21.2 2.6 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|289582547|ref|YP_003481013.1| - 0.0003 20.4 2.3 0.00085 19.0 2.3 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|289582547|ref|YP_003481013.1| - 0.011 16.4 5.9 0.069 13.7 2.3 3.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 gi|289582547|ref|YP_003481013.1| - 0.013 15.1 0.3 0.025 14.1 0.3 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|289582547|ref|YP_003481013.1| - 0.067 13.5 1.0 0.25 11.6 0.2 2.1 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|289582547|ref|YP_003481013.1| - 0.13 11.5 0.7 0.27 10.5 0.7 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thiolase_N PF00108.23 gi|289582549|ref|YP_003481015.1| - 5.4e-69 232.4 4.8 2.7e-68 230.2 4.8 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289582549|ref|YP_003481015.1| - 4.6e-43 145.8 0.1 3.9e-42 142.8 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289582549|ref|YP_003481015.1| - 7.4e-07 29.0 1.7 1.2e-06 28.3 0.4 2.0 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|289582549|ref|YP_003481015.1| - 0.02 14.7 1.2 5.8 6.8 0.0 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TCP PF03634.13 gi|289582549|ref|YP_003481015.1| - 0.055 14.0 0.0 0.34 11.5 0.0 2.0 2 0 0 2 2 2 0 TCP family transcription factor Acyl-CoA_dh_1 PF00441.24 gi|289582550|ref|YP_003481016.1| - 1.9e-51 174.2 2.5 2.6e-51 173.8 2.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289582550|ref|YP_003481016.1| - 1e-30 106.7 0.1 1e-30 106.7 0.1 2.0 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289582550|ref|YP_003481016.1| - 7.1e-29 100.8 5.2 1.1e-28 100.2 5.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289582550|ref|YP_003481016.1| - 4.6e-26 90.9 0.1 8.8e-26 90.0 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 gi|289582550|ref|YP_003481016.1| - 0.00021 21.0 2.8 0.00021 21.0 2.8 2.7 2 2 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|289582550|ref|YP_003481016.1| - 0.0011 18.1 0.4 0.0021 17.2 0.4 1.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal AMP-binding PF00501.28 gi|289582551|ref|YP_003481017.1| - 3.4e-109 365.2 0.0 4.1e-109 365.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289582551|ref|YP_003481017.1| - 1.1e-23 83.9 1.1 2.5e-23 82.9 1.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DctM PF06808.12 gi|289582552|ref|YP_003481018.1| - 8.7e-60 202.7 45.2 8.7e-60 202.7 45.2 1.9 2 0 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component SpoIIIAH PF12685.7 gi|289582552|ref|YP_003481018.1| - 0.018 14.8 3.2 0.032 14.1 3.2 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein Ntox15 PF15604.6 gi|289582552|ref|YP_003481018.1| - 0.25 11.4 2.8 0.43 10.7 2.8 1.3 1 0 0 1 1 1 0 Novel toxin 15 CC190 PF15768.5 gi|289582552|ref|YP_003481018.1| - 7 6.6 5.6 10 6.1 5.6 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 190 NMT1_3 PF16868.5 gi|289582553|ref|YP_003481019.1| - 2.8e-24 86.0 0.0 3.9e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family Acyl-CoA_dh_1 PF00441.24 gi|289582554|ref|YP_003481020.1| - 4.2e-33 114.7 1.9 6.6e-33 114.0 1.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289582554|ref|YP_003481020.1| - 5.7e-28 97.8 0.4 5.3e-27 94.7 0.2 2.4 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289582554|ref|YP_003481020.1| - 1.6e-23 82.7 0.0 3e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289582554|ref|YP_003481020.1| - 2.4e-10 40.8 1.3 3.9e-10 40.1 1.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|289582554|ref|YP_003481020.1| - 0.018 14.7 0.0 0.076 12.7 0.0 2.0 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal IclR PF01614.18 gi|289582555|ref|YP_003481021.1| - 8.3e-34 116.2 0.0 1.5e-32 112.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289582555|ref|YP_003481021.1| - 5.5e-13 48.5 0.1 1.2e-12 47.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|289582555|ref|YP_003481021.1| - 8.9e-09 35.1 0.1 3.1e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|289582555|ref|YP_003481021.1| - 3e-08 33.1 0.0 5.8e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289582555|ref|YP_003481021.1| - 7.9e-07 28.8 0.0 1.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289582555|ref|YP_003481021.1| - 1.9e-06 27.9 0.0 3.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|289582555|ref|YP_003481021.1| - 1.8e-05 24.6 0.0 5.3e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|289582555|ref|YP_003481021.1| - 4.8e-05 23.2 0.1 9.7e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289582555|ref|YP_003481021.1| - 0.00021 21.1 0.0 0.00039 20.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|289582555|ref|YP_003481021.1| - 0.00023 21.3 0.0 0.00056 20.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|289582555|ref|YP_003481021.1| - 0.00047 20.6 0.0 0.0013 19.1 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain RP-C PF03428.13 gi|289582555|ref|YP_003481021.1| - 0.0018 18.0 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|289582555|ref|YP_003481021.1| - 0.012 16.0 0.0 0.045 14.1 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.6 gi|289582555|ref|YP_003481021.1| - 0.015 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|289582555|ref|YP_003481021.1| - 0.018 15.6 0.0 0.031 14.9 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_40 PF14493.6 gi|289582555|ref|YP_003481021.1| - 0.019 15.4 0.0 0.037 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1803 PF08820.10 gi|289582555|ref|YP_003481021.1| - 0.024 14.7 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HTH_7 PF02796.15 gi|289582555|ref|YP_003481021.1| - 0.037 14.1 0.0 0.1 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|289582555|ref|YP_003481021.1| - 0.047 13.5 0.1 0.095 12.5 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PadR PF03551.14 gi|289582555|ref|YP_003481021.1| - 0.066 13.2 0.4 1 9.4 0.0 3.0 4 1 0 4 4 3 0 Transcriptional regulator PadR-like family HTH_26 PF13443.6 gi|289582555|ref|YP_003481021.1| - 0.095 13.2 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain zinc_ribbon_4 PF13717.6 gi|289582556|ref|YP_003481022.1| - 0.17 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA_23 PF13476.6 gi|289582557|ref|YP_003481023.1| - 6.2e-11 43.2 18.2 6.2e-11 43.2 18.2 4.9 1 1 1 2 2 1 1 AAA domain DHR10 PF18595.1 gi|289582557|ref|YP_003481023.1| - 0.00016 21.7 78.0 0.0012 18.8 12.2 5.8 1 1 2 4 4 4 2 Designed helical repeat protein 10 domain Spc7 PF08317.11 gi|289582557|ref|YP_003481023.1| - 0.00042 19.3 63.9 0.042 12.7 15.9 4.3 1 1 3 4 4 4 3 Spc7 kinetochore protein MscS_porin PF12795.7 gi|289582557|ref|YP_003481023.1| - 0.0023 17.5 56.1 0.037 13.6 21.2 3.7 2 1 1 3 3 3 3 Mechanosensitive ion channel porin domain APG6_N PF17675.1 gi|289582557|ref|YP_003481023.1| - 0.0055 17.2 26.3 0.0055 17.2 26.3 6.0 2 2 3 5 5 4 1 Apg6 coiled-coil region DUF4407 PF14362.6 gi|289582557|ref|YP_003481023.1| - 0.0073 15.7 51.2 0.022 14.1 13.3 4.0 1 1 2 4 4 4 3 Domain of unknown function (DUF4407) Tropomyosin_1 PF12718.7 gi|289582557|ref|YP_003481023.1| - 0.0099 16.0 33.3 0.0099 16.0 33.3 5.4 1 1 3 4 4 3 1 Tropomyosin like Baculo_PEP_C PF04513.12 gi|289582557|ref|YP_003481023.1| - 0.031 14.3 18.7 3.1 7.9 1.1 4.9 1 1 4 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.9 gi|289582557|ref|YP_003481023.1| - 0.054 12.6 42.0 0.15 11.1 0.2 3.9 1 1 3 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-F_leu_zip PF10473.9 gi|289582557|ref|YP_003481023.1| - 0.054 13.5 77.4 0.76 9.8 17.1 5.3 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.12 gi|289582557|ref|YP_003481023.1| - 0.1 13.1 23.4 6 7.4 0.5 6.3 3 3 2 5 5 5 0 Nucleopolyhedrovirus P10 protein zf-ribbon_3 PF13248.6 gi|289582557|ref|YP_003481023.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain GAS PF13851.6 gi|289582557|ref|YP_003481023.1| - 0.18 11.1 54.4 0.099 12.0 9.0 5.3 2 2 3 5 5 5 0 Growth-arrest specific micro-tubule binding DivIC PF04977.15 gi|289582557|ref|YP_003481023.1| - 0.18 11.6 62.4 0.038 13.8 3.8 8.6 3 2 5 8 8 8 0 Septum formation initiator DUF5082 PF16888.5 gi|289582557|ref|YP_003481023.1| - 0.23 11.7 48.7 0.66 10.3 0.4 6.8 3 2 2 5 5 5 0 Domain of unknown function (DUF5082) DUF3584 PF12128.8 gi|289582557|ref|YP_003481023.1| - 0.26 8.7 58.9 0.099 10.1 29.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|289582557|ref|YP_003481023.1| - 0.43 10.1 35.6 0.9 9.1 9.7 3.3 1 1 1 2 2 2 0 Exonuclease VII, large subunit DUF1664 PF07889.12 gi|289582557|ref|YP_003481023.1| - 0.61 10.1 33.9 0.37 10.8 0.7 5.7 4 1 0 5 5 5 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|289582557|ref|YP_003481023.1| - 0.89 9.7 30.5 0.92 9.7 4.7 4.6 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family MitMem_reg PF13012.6 gi|289582557|ref|YP_003481023.1| - 1.1 9.8 7.9 0.64 10.5 0.1 3.8 3 1 0 3 3 3 0 Maintenance of mitochondrial structure and function WXG100 PF06013.12 gi|289582557|ref|YP_003481023.1| - 1.1 9.5 22.3 3.5 7.9 0.0 6.9 4 2 2 7 7 7 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.22 gi|289582557|ref|YP_003481023.1| - 1.4 9.2 51.4 0.23 11.7 7.1 5.3 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 gi|289582557|ref|YP_003481023.1| - 1.4 7.4 42.1 1.9 7.0 20.5 3.0 1 1 0 2 2 2 0 AAA domain Borrelia_REV PF03978.13 gi|289582557|ref|YP_003481023.1| - 2.2 8.2 11.6 0.11 12.5 4.0 2.6 2 1 1 3 3 3 0 Borrelia burgdorferi REV protein Laminin_II PF06009.12 gi|289582557|ref|YP_003481023.1| - 2.5 8.1 29.6 0.79 9.7 6.6 5.0 2 2 2 5 5 5 0 Laminin Domain II COG2 PF06148.11 gi|289582557|ref|YP_003481023.1| - 2.9 8.0 36.5 9.1 6.4 2.1 6.4 2 1 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 FliD_N PF02465.18 gi|289582557|ref|YP_003481023.1| - 3.4 8.4 12.4 11 6.7 0.2 5.0 3 2 3 6 6 4 0 Flagellar hook-associated protein 2 N-terminus Prefoldin PF02996.17 gi|289582557|ref|YP_003481023.1| - 4.2 7.3 44.4 1.3 9.0 0.8 8.4 3 3 4 8 8 8 0 Prefoldin subunit FlxA PF14282.6 gi|289582557|ref|YP_003481023.1| - 4.7 7.3 35.8 2.5 8.1 0.5 5.1 3 2 1 5 5 5 0 FlxA-like protein DUF3450 PF11932.8 gi|289582557|ref|YP_003481023.1| - 5 6.4 58.9 0.75 9.0 6.7 6.0 2 1 4 6 6 6 0 Protein of unknown function (DUF3450) DUF4201 PF13870.6 gi|289582557|ref|YP_003481023.1| - 6.8 6.4 45.5 2.2 8.0 11.2 4.6 2 2 3 5 5 5 0 Domain of unknown function (DUF4201) DUF948 PF06103.11 gi|289582557|ref|YP_003481023.1| - 7.4 6.9 16.8 10 6.5 0.5 5.5 5 1 0 5 5 4 0 Bacterial protein of unknown function (DUF948) DASH_Dam1 PF08653.10 gi|289582557|ref|YP_003481023.1| - 7.9 6.4 23.1 5.1 7.0 0.2 7.0 7 1 2 9 9 7 0 DASH complex subunit Dam1 DUF4795 PF16043.5 gi|289582557|ref|YP_003481023.1| - 8.6 5.9 49.9 2.6 7.6 19.7 3.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) HemX PF04375.14 gi|289582557|ref|YP_003481023.1| - 9.1 5.5 33.2 0.18 11.1 4.5 4.0 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF3006 PF11213.8 gi|289582558|ref|YP_003481024.1| - 9.5e-06 25.8 3.9 1.4e-05 25.2 3.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) adh_short_C2 PF13561.6 gi|289582559|ref|YP_003481025.1| - 2.6e-71 239.9 1.1 2.9e-71 239.7 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289582559|ref|YP_003481025.1| - 5.4e-54 182.6 0.5 6.4e-54 182.4 0.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289582559|ref|YP_003481025.1| - 1.1e-11 45.0 0.9 1.5e-11 44.5 0.9 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289582559|ref|YP_003481025.1| - 3.7e-08 33.1 2.5 2.5e-07 30.4 2.5 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|289582559|ref|YP_003481025.1| - 0.0057 16.9 1.6 0.012 15.9 1.5 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ADH_zinc_N PF00107.26 gi|289582559|ref|YP_003481025.1| - 0.011 15.7 0.7 0.023 14.7 0.7 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|289582559|ref|YP_003481025.1| - 0.014 14.7 0.4 0.03 13.7 0.3 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|289582559|ref|YP_003481025.1| - 0.025 14.0 0.2 0.032 13.6 0.2 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 3HCDH_N PF02737.18 gi|289582559|ref|YP_003481025.1| - 0.043 13.7 0.3 0.076 12.9 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CheB_methylest PF01339.17 gi|289582559|ref|YP_003481025.1| - 0.067 12.9 0.2 0.69 9.6 0.1 2.1 2 0 0 2 2 2 0 CheB methylesterase RmlD_sub_bind PF04321.17 gi|289582559|ref|YP_003481025.1| - 0.074 12.1 0.2 0.11 11.5 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain AstE_AspA PF04952.14 gi|289582560|ref|YP_003481026.1| - 3.1e-34 118.4 0.1 3.6e-34 118.2 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|289582560|ref|YP_003481026.1| - 0.023 14.5 0.1 0.13 12.1 0.0 1.9 1 1 1 2 2 2 0 Zinc carboxypeptidase Pro_isomerase PF00160.21 gi|289582561|ref|YP_003481027.1| - 1.8e-50 171.3 0.0 2.1e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HTH_3 PF01381.22 gi|289582562|ref|YP_003481028.1| - 5.8e-17 61.5 0.0 7.6e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|289582562|ref|YP_003481028.1| - 3.5e-10 40.1 0.0 4.3e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|289582562|ref|YP_003481028.1| - 4.6e-10 39.4 0.0 6.5e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|289582562|ref|YP_003481028.1| - 1.6e-05 24.7 0.4 2.2e-05 24.2 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|289582562|ref|YP_003481028.1| - 3.3e-05 24.2 0.0 4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|289582562|ref|YP_003481028.1| - 0.00094 18.7 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|289582562|ref|YP_003481028.1| - 0.019 14.5 0.2 0.031 13.8 0.2 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|289582562|ref|YP_003481028.1| - 0.027 14.5 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|289582562|ref|YP_003481028.1| - 0.043 13.7 0.1 0.067 13.1 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|289582562|ref|YP_003481028.1| - 0.05 13.6 0.1 0.079 12.9 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.15 gi|289582562|ref|YP_003481028.1| - 0.053 13.6 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|289582562|ref|YP_003481028.1| - 0.062 13.1 0.0 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain HTH_37 PF13744.6 gi|289582562|ref|YP_003481028.1| - 0.064 13.2 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|289582562|ref|YP_003481028.1| - 0.092 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF2178 PF09946.9 gi|289582563|ref|YP_003481029.1| - 0.00027 21.1 0.5 0.00037 20.6 0.5 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) AgrB PF04647.15 gi|289582563|ref|YP_003481029.1| - 0.016 14.5 0.2 0.02 14.2 0.2 1.2 1 0 0 1 1 1 0 Accessory gene regulator B DUF4191 PF13829.6 gi|289582563|ref|YP_003481029.1| - 0.51 9.6 5.0 0.15 11.4 1.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) Phage_holin_3_6 PF07332.11 gi|289582563|ref|YP_003481029.1| - 0.57 10.2 7.4 7.7 6.6 3.6 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1427 PF07235.11 gi|289582563|ref|YP_003481029.1| - 1.5 8.8 7.9 1 9.3 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1427) adh_short PF00106.25 gi|289582564|ref|YP_003481030.1| - 3.8e-22 78.7 0.1 2.5e-21 76.0 0.1 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|289582564|ref|YP_003481030.1| - 5.6e-12 45.7 0.1 9e-12 45.0 0.1 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|289582564|ref|YP_003481030.1| - 6.6e-07 29.4 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289582564|ref|YP_003481030.1| - 1.3e-05 24.8 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|289582564|ref|YP_003481030.1| - 0.003 17.5 0.1 0.0045 16.9 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|289582564|ref|YP_003481030.1| - 0.032 13.3 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Fer4_15 PF13459.6 gi|289582565|ref|YP_003481031.1| - 0.0061 17.3 0.8 0.0061 17.3 0.8 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain RNA_pol_Rpb6 PF01192.22 gi|289582566|ref|YP_003481032.1| - 0.003 17.4 1.4 0.99 9.4 0.1 2.5 2 0 0 2 2 2 2 RNA polymerase Rpb6 DUF2267 PF10025.9 gi|289582566|ref|YP_003481032.1| - 0.074 13.3 2.6 0.16 12.2 2.6 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DUF2280 PF10045.9 gi|289582566|ref|YP_003481032.1| - 0.19 12.0 0.5 0.43 10.9 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2280) Aldedh PF00171.22 gi|289582567|ref|YP_003481033.1| - 8.6e-156 519.0 0.7 9.7e-156 518.9 0.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Polysacc_synt_C PF14667.6 gi|289582568|ref|YP_003481034.1| - 2.5 8.2 7.3 2.2 8.3 0.5 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain QRPTase_C PF01729.19 gi|289582569|ref|YP_003481035.1| - 5.9e-54 182.4 2.3 1.1e-53 181.5 0.1 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|289582569|ref|YP_003481035.1| - 7.1e-21 74.1 0.6 1.8e-20 72.8 0.4 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_2 PF00890.24 gi|289582570|ref|YP_003481036.1| - 5e-73 246.6 6.4 6.4e-73 246.2 6.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289582570|ref|YP_003481036.1| - 1.4e-11 44.2 0.7 1.8e-05 24.2 0.6 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289582570|ref|YP_003481036.1| - 2.3e-10 40.1 1.1 1.7e-06 27.4 0.9 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|289582570|ref|YP_003481036.1| - 5.7e-07 29.4 4.9 1.1e-06 28.5 0.8 2.6 2 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|289582570|ref|YP_003481036.1| - 7.1e-06 25.6 4.5 7.1e-06 25.6 4.5 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|289582570|ref|YP_003481036.1| - 0.00012 22.3 0.3 0.00032 20.9 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|289582570|ref|YP_003481036.1| - 0.00022 20.6 0.7 0.0004 19.8 0.7 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|289582570|ref|YP_003481036.1| - 0.00026 19.8 0.6 0.023 13.4 0.8 2.1 2 0 0 2 2 2 1 HI0933-like protein Succ_DH_flav_C PF02910.20 gi|289582570|ref|YP_003481036.1| - 0.00034 20.6 0.3 0.00083 19.3 0.3 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term FAD_binding_3 PF01494.19 gi|289582570|ref|YP_003481036.1| - 0.0045 16.3 0.1 0.011 15.1 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|289582570|ref|YP_003481036.1| - 0.035 14.6 0.2 0.13 12.8 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289582570|ref|YP_003481036.1| - 0.091 12.0 0.1 0.23 10.7 0.1 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NadA PF02445.16 gi|289582571|ref|YP_003481037.1| - 1.7e-103 345.9 0.0 2e-103 345.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Arteri_nsp7a PF16749.5 gi|289582571|ref|YP_003481037.1| - 0.19 11.9 0.5 35 4.6 0.1 3.4 3 1 1 4 4 4 0 Arterivirus nonstructural protein 7 alpha Bac_luciferase PF00296.20 gi|289582572|ref|YP_003481038.1| - 2.2e-64 217.9 6.4 3e-64 217.4 6.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase PIN PF01850.21 gi|289582573|ref|YP_003481039.1| - 3.3e-07 30.8 1.7 3.1e-06 27.7 1.7 2.0 1 1 0 1 1 1 1 PIN domain DZR PF12773.7 gi|289582573|ref|YP_003481039.1| - 0.0081 16.2 1.3 0.012 15.6 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.6 gi|289582573|ref|YP_003481039.1| - 0.045 13.4 0.6 0.067 12.8 0.6 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding tRNA-synt_1g PF09334.11 gi|289582573|ref|YP_003481039.1| - 0.076 11.8 0.0 0.076 11.8 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) Zn-ribbon_8 PF09723.10 gi|289582573|ref|YP_003481039.1| - 0.43 10.7 3.1 4.3 7.5 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain MazE_antitoxin PF04014.18 gi|289582574|ref|YP_003481040.1| - 4.5e-11 42.4 0.1 6.3e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|289582574|ref|YP_003481040.1| - 2.7e-06 27.7 0.0 5.9e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 gi|289582574|ref|YP_003481040.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) GIDE PF12483.8 gi|289582575|ref|YP_003481041.1| - 1.3e-05 24.6 0.0 6.7e-05 22.3 0.0 2.1 1 1 0 1 1 1 1 E3 Ubiquitin ligase MacB_PCD PF12704.7 gi|289582576|ref|YP_003481042.1| - 2.1e-22 80.4 6.6 2.1e-22 80.4 6.6 2.3 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|289582576|ref|YP_003481042.1| - 4.4e-14 52.7 3.5 4.4e-14 52.7 3.5 3.3 3 0 0 3 3 3 1 FtsX-like permease family YppG PF14179.6 gi|289582576|ref|YP_003481042.1| - 0.083 13.6 0.1 0.32 11.7 0.0 1.9 2 0 0 2 2 2 0 YppG-like protein DUF4064 PF13273.6 gi|289582576|ref|YP_003481042.1| - 2.2 8.6 16.8 12 6.3 0.1 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF4064) Amidohydro_3 PF07969.11 gi|289582577|ref|YP_003481043.1| - 1.8e-87 294.8 16.0 2.2e-87 294.5 16.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|289582577|ref|YP_003481043.1| - 1.1e-18 67.7 1.7 2.2e-13 50.3 0.0 3.1 3 0 0 3 3 3 2 Amidohydrolase family HMG-CoA_red PF00368.18 gi|289582578|ref|YP_003481044.1| - 2e-126 421.9 9.7 2.3e-126 421.7 9.7 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase FUSC-like PF12805.7 gi|289582579|ref|YP_003481045.1| - 0.61 9.1 6.4 0.73 8.9 6.4 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS HTH_41 PF14502.6 gi|289582580|ref|YP_003481046.1| - 0.00062 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289582580|ref|YP_003481046.1| - 0.025 14.5 0.1 0.082 12.8 0.1 1.8 1 0 0 1 1 1 0 MarR family RNA_POL_M_15KD PF02150.16 gi|289582580|ref|YP_003481046.1| - 0.031 14.1 0.9 0.059 13.3 0.9 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Rrf2 PF02082.20 gi|289582580|ref|YP_003481046.1| - 0.04 14.3 0.1 0.087 13.2 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF5610 PF18433.1 gi|289582580|ref|YP_003481046.1| - 0.048 14.2 0.4 0.16 12.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5610) TrmB PF01978.19 gi|289582580|ref|YP_003481046.1| - 0.081 12.8 0.1 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CpXC PF14353.6 gi|289582580|ref|YP_003481046.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 CpXC protein TBPIP PF07106.13 gi|289582580|ref|YP_003481046.1| - 0.16 11.9 0.0 0.36 10.8 0.0 1.6 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain Zn_Tnp_IS91 PF14319.6 gi|289582580|ref|YP_003481046.1| - 0.17 11.9 0.4 0.28 11.2 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-CSL PF05207.13 gi|289582580|ref|YP_003481046.1| - 0.2 11.4 2.3 4 7.2 0.4 2.6 2 0 0 2 2 2 0 CSL zinc finger zinc_ribbon_4 PF13717.6 gi|289582580|ref|YP_003481046.1| - 0.24 11.3 1.8 18 5.3 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain GntR PF00392.21 gi|289582580|ref|YP_003481046.1| - 0.27 10.9 1.9 0.53 10.0 0.2 2.3 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family HypA PF01155.19 gi|289582580|ref|YP_003481046.1| - 0.28 11.2 1.4 0.43 10.6 0.7 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|289582580|ref|YP_003481046.1| - 0.6 10.3 2.8 1.7 8.8 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Cupin_2 PF07883.11 gi|289582581|ref|YP_003481047.1| - 1e-19 70.0 1.2 1.3e-19 69.7 1.2 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|289582581|ref|YP_003481047.1| - 3e-06 27.2 0.6 4.1e-06 26.7 0.6 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|289582581|ref|YP_003481047.1| - 0.00096 18.8 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.12 gi|289582581|ref|YP_003481047.1| - 0.0052 17.0 0.0 0.006 16.8 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase MannoseP_isomer PF01050.18 gi|289582581|ref|YP_003481047.1| - 0.017 15.0 0.0 0.022 14.7 0.0 1.0 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|289582581|ref|YP_003481047.1| - 0.037 13.7 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) EutQ PF06249.12 gi|289582581|ref|YP_003481047.1| - 0.21 11.3 0.0 0.25 11.1 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Nramp PF01566.18 gi|289582582|ref|YP_003481048.1| - 1e-59 202.4 32.7 1.5e-59 201.8 32.7 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Sensor PF13796.6 gi|289582583|ref|YP_003481049.1| - 5.9e-32 110.9 20.1 9.8e-32 110.2 19.4 1.6 1 1 1 2 2 2 2 Putative sensor Dehyd-heme_bind PF09098.10 gi|289582584|ref|YP_003481050.1| - 0.079 12.6 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding OxoDH_E1alpha_N PF12573.8 gi|289582585|ref|YP_003481051.1| - 0.034 13.9 0.4 2 8.2 0.1 2.3 2 0 0 2 2 2 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Acetyltransf_10 PF13673.7 gi|289582586|ref|YP_003481052.1| - 1.7e-21 76.5 0.2 2.8e-21 75.8 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289582586|ref|YP_003481052.1| - 4.5e-12 46.2 0.0 5.7e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|289582586|ref|YP_003481052.1| - 2.7e-10 40.5 0.0 3.6e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289582586|ref|YP_003481052.1| - 1.5e-05 25.1 1.5 7.4e-05 22.8 1.5 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289582586|ref|YP_003481052.1| - 3.7e-05 23.6 0.1 6e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|289582586|ref|YP_003481052.1| - 3.9e-05 23.8 0.0 7.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289582586|ref|YP_003481052.1| - 0.026 14.7 0.5 0.053 13.7 0.5 1.8 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_5 PF13444.6 gi|289582586|ref|YP_003481052.1| - 0.088 13.5 1.5 0.19 12.5 1.4 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Iso_dh PF00180.20 gi|289582587|ref|YP_003481053.1| - 4.5e-112 374.6 0.0 5.6e-112 374.3 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF998 PF06197.13 gi|289582588|ref|YP_003481054.1| - 0.65 9.6 11.1 0.3 10.7 7.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF4131 PF13567.6 gi|289582588|ref|YP_003481054.1| - 7.1 6.2 6.2 27 4.3 6.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Asparaginase_2 PF01112.18 gi|289582589|ref|YP_003481055.1| - 3.7e-63 213.4 11.0 4.2e-63 213.2 11.0 1.0 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.24 gi|289582590|ref|YP_003481056.1| - 2.5e-40 138.4 1.1 3.5e-40 138.0 1.1 1.2 1 1 0 1 1 1 1 Metallopeptidase family M24 CBS PF00571.28 gi|289582590|ref|YP_003481056.1| - 0.07 13.6 0.0 0.26 11.8 0.0 2.0 1 0 0 1 1 1 0 CBS domain NOB1_Zn_bind PF08772.11 gi|289582591|ref|YP_003481057.1| - 0.00045 20.3 1.6 0.055 13.6 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like Rpr2 PF04032.16 gi|289582591|ref|YP_003481057.1| - 0.0032 17.7 0.5 0.0038 17.5 0.5 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2321 PF10083.9 gi|289582591|ref|YP_003481057.1| - 0.033 13.8 0.4 0.035 13.7 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_15 PF17032.5 gi|289582591|ref|YP_003481057.1| - 0.4 11.5 4.3 0.84 10.4 4.3 1.5 1 1 0 1 1 1 0 zinc-ribbon family HIT PF01230.23 gi|289582592|ref|YP_003481058.1| - 2.1e-14 54.0 0.0 3.6e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|289582592|ref|YP_003481058.1| - 3e-06 27.7 0.0 6.2e-06 26.7 0.0 1.5 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|289582592|ref|YP_003481058.1| - 0.00016 21.6 0.1 0.00037 20.4 0.0 1.6 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 Cupin_2 PF07883.11 gi|289582593|ref|YP_003481059.1| - 7e-15 54.5 1.5 9.4e-15 54.1 1.5 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|289582593|ref|YP_003481059.1| - 8.4e-05 22.4 0.4 0.00013 21.8 0.2 1.4 1 1 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|289582593|ref|YP_003481059.1| - 0.0017 18.0 0.2 0.0025 17.5 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) cNMP_binding PF00027.29 gi|289582593|ref|YP_003481059.1| - 0.003 17.6 0.0 0.0037 17.3 0.0 1.2 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain 3-HAO PF06052.12 gi|289582593|ref|YP_003481059.1| - 0.0095 15.6 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Pirin PF02678.16 gi|289582593|ref|YP_003481059.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Pirin Cupin_1 PF00190.22 gi|289582593|ref|YP_003481059.1| - 0.022 14.4 0.0 0.028 14.0 0.0 1.1 1 0 0 1 1 1 0 Cupin DMSP_lyase PF16867.5 gi|289582593|ref|YP_003481059.1| - 0.074 12.7 0.3 0.089 12.4 0.3 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase GST_N_3 PF13417.6 gi|289582594|ref|YP_003481060.1| - 1.2e-12 48.1 0.0 1.3e-12 47.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|289582594|ref|YP_003481060.1| - 3.7e-12 46.3 0.1 5.4e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|289582594|ref|YP_003481060.1| - 4.1e-08 33.4 0.0 4.7e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|289582594|ref|YP_003481060.1| - 3.3e-05 24.1 0.0 3.7e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|289582594|ref|YP_003481060.1| - 0.0099 16.3 0.2 0.014 15.8 0.2 1.5 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) SapB_1 PF05184.15 gi|289582594|ref|YP_003481060.1| - 0.085 12.9 0.6 0.34 11.0 0.2 2.0 2 0 0 2 2 2 0 Saposin-like type B, region 1 NTP_transf_3 PF12804.7 gi|289582594|ref|YP_003481060.1| - 0.18 12.2 0.0 0.2 12.0 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain AhpC-TSA PF00578.21 gi|289582595|ref|YP_003481061.1| - 1.1e-10 41.5 0.0 1.3e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Scs3p PF10261.9 gi|289582596|ref|YP_003481062.1| - 4.6 6.7 4.5 5.4 6.4 4.5 1.1 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM zf-AN1 PF01428.16 gi|289582597|ref|YP_003481063.1| - 4.5e-10 39.5 12.3 5.8e-10 39.2 12.3 1.1 1 0 0 1 1 1 1 AN1-like Zinc finger zf-C3HC4_2 PF13923.6 gi|289582597|ref|YP_003481063.1| - 4.2 7.3 9.8 6.8 6.6 9.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Radical_SAM PF04055.21 gi|289582599|ref|YP_003481065.1| - 6.9e-22 78.6 0.0 1.3e-21 77.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|289582599|ref|YP_003481065.1| - 1.3e-19 70.1 0.1 2.8e-19 69.0 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|289582599|ref|YP_003481065.1| - 0.047 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 TRAM domain Peptidase_M48 PF01435.18 gi|289582600|ref|YP_003481066.1| - 1.5e-27 96.6 0.0 2.4e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289582600|ref|YP_003481066.1| - 0.0012 18.1 3.8 0.0036 16.6 0.0 2.8 3 0 0 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|289582600|ref|YP_003481066.1| - 0.011 15.6 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 SprT-like family DUF4129 PF13559.6 gi|289582601|ref|YP_003481067.1| - 1e-09 38.5 6.0 1e-09 38.5 6.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF2721 PF11026.8 gi|289582602|ref|YP_003481068.1| - 0.092 12.6 0.2 0.092 12.6 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF58 PF01882.18 gi|289582603|ref|YP_003481069.1| - 8.1e-19 67.7 1.5 2.6e-18 66.1 1.5 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|289582603|ref|YP_003481069.1| - 6.2e-07 29.6 6.4 6.2e-07 29.6 6.4 3.0 2 1 1 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|289582603|ref|YP_003481069.1| - 8.1e-05 22.8 1.0 8.1e-05 22.8 1.0 2.9 1 1 1 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Sporozoite_P67 PF05642.11 gi|289582603|ref|YP_003481069.1| - 0.19 9.8 9.4 0.31 9.1 9.4 1.3 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF2270 PF10028.9 gi|289582604|ref|YP_003481070.1| - 0.0058 16.2 0.7 0.0058 16.2 0.7 2.7 3 1 0 3 3 3 1 Predicted integral membrane protein (DUF2270) YlaC PF10777.9 gi|289582604|ref|YP_003481070.1| - 8.8 6.2 6.8 3.9 7.3 0.1 3.3 3 0 0 3 3 3 0 Inner membrane protein YlaC AAA_3 PF07726.11 gi|289582605|ref|YP_003481071.1| - 1.7e-65 218.8 0.1 2.6e-65 218.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|289582605|ref|YP_003481071.1| - 1.7e-17 63.0 2.0 3.5e-17 62.0 2.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|289582605|ref|YP_003481071.1| - 3.4e-16 59.5 0.0 6.3e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|289582605|ref|YP_003481071.1| - 1.5e-06 28.7 0.0 4.2e-06 27.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|289582605|ref|YP_003481071.1| - 2.4e-05 24.1 0.0 0.002 17.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|289582605|ref|YP_003481071.1| - 0.00043 19.5 0.0 0.00056 19.1 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|289582605|ref|YP_003481071.1| - 0.0038 16.6 0.1 2.4 7.5 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|289582605|ref|YP_003481071.1| - 0.008 15.9 0.0 0.15 11.8 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|289582605|ref|YP_003481071.1| - 0.11 12.6 0.0 0.35 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AI-2E_transport PF01594.16 gi|289582606|ref|YP_003481072.1| - 5.8e-47 160.4 32.7 6.9e-47 160.2 32.7 1.0 1 0 0 1 1 1 1 AI-2E family transporter DDDD PF10161.9 gi|289582606|ref|YP_003481072.1| - 0.018 14.8 0.3 0.018 14.8 0.3 2.6 3 0 0 3 3 3 0 Putative mitochondrial precursor protein CrgA PF06781.12 gi|289582606|ref|YP_003481072.1| - 1.9 8.6 0.0 1.9 8.6 0.0 3.3 3 1 0 3 3 3 0 Cell division protein CrgA DUF5518 PF17647.1 gi|289582607|ref|YP_003481073.1| - 2.9e-05 24.2 16.5 2.9e-05 24.2 16.5 3.1 3 0 0 3 3 3 1 Family of unknown function (DUF5518) CoA_transf_3 PF02515.17 gi|289582607|ref|YP_003481073.1| - 0.1 11.7 3.3 0.17 11.0 3.3 1.3 1 0 0 1 1 1 0 CoA-transferase family III DUF1508 PF07411.12 gi|289582608|ref|YP_003481074.1| - 2.1e-18 65.9 0.1 4.3e-18 64.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Zn-ribbon_8 PF09723.10 gi|289582609|ref|YP_003481075.1| - 0.56 10.4 7.4 22 5.3 1.2 3.5 3 0 0 3 3 3 0 Zinc ribbon domain BAF1_ABF1 PF04684.13 gi|289582609|ref|YP_003481075.1| - 0.83 8.6 13.7 1.1 8.3 13.7 1.2 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor NESP55 PF06390.12 gi|289582609|ref|YP_003481075.1| - 1.4 8.4 27.0 5.7 6.5 26.9 2.2 1 1 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) BUD22 PF09073.10 gi|289582609|ref|YP_003481075.1| - 2.5 7.3 11.8 3.4 6.9 11.8 1.1 1 0 0 1 1 1 0 BUD22 NOB1_Zn_bind PF08772.11 gi|289582609|ref|YP_003481075.1| - 3.1 8.0 4.3 4.4 7.5 0.3 2.7 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like PNP_UDP_1 PF01048.20 gi|289582610|ref|YP_003481076.1| - 1.7e-44 151.8 3.0 2e-44 151.6 3.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HalOD1 PF18545.1 gi|289582611|ref|YP_003481077.1| - 3.8e-19 68.7 2.6 4.4e-19 68.5 2.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 SipA PF09052.10 gi|289582611|ref|YP_003481077.1| - 0.15 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 SipA N-terminal domain PfkB PF00294.24 gi|289582612|ref|YP_003481078.1| - 1.4e-45 155.9 8.7 7.8e-45 153.5 8.7 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Arg_repressor_C PF02863.18 gi|289582612|ref|YP_003481078.1| - 0.0083 16.0 0.4 0.032 14.1 0.4 2.0 2 0 0 2 2 2 1 Arginine repressor, C-terminal domain DUF2007 PF09413.10 gi|289582612|ref|YP_003481078.1| - 0.072 13.3 0.0 1.5 9.0 0.0 2.8 3 0 0 3 3 3 0 Putative prokaryotic signal transducing protein DUF63 PF01889.17 gi|289582613|ref|YP_003481079.1| - 9.6e-20 71.9 7.3 1.4e-19 71.3 7.3 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 IF-2B PF01008.17 gi|289582614|ref|YP_003481080.1| - 6.3e-76 255.3 0.1 7.3e-76 255.1 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.23 gi|289582614|ref|YP_003481080.1| - 0.0035 17.0 1.8 0.18 11.6 0.4 3.2 2 1 1 3 3 3 1 PEP-utilising enzyme, mobile domain DUF1256 PF06866.11 gi|289582614|ref|YP_003481080.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1256) PRP4 PF08799.11 gi|289582614|ref|YP_003481080.1| - 0.32 10.6 3.6 0.83 9.3 0.1 3.0 3 0 0 3 3 3 0 pre-mRNA processing factor 4 (PRP4) like DeoC PF01791.9 gi|289582615|ref|YP_003481081.1| - 5.6e-10 39.2 3.1 7.3e-10 38.9 3.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|289582615|ref|YP_003481081.1| - 0.15 11.3 1.4 0.31 10.2 1.4 1.6 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase ABC2_membrane_2 PF12679.7 gi|289582616|ref|YP_003481082.1| - 2.5e-33 115.6 20.3 6.8e-33 114.2 20.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289582616|ref|YP_003481082.1| - 1.5e-09 38.0 9.3 2.4e-09 37.4 9.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289582616|ref|YP_003481082.1| - 3.2e-05 23.6 16.2 0.00017 21.2 16.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289582616|ref|YP_003481082.1| - 0.0036 16.4 14.1 0.0036 16.4 14.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF805 PF05656.14 gi|289582616|ref|YP_003481082.1| - 0.081 13.4 17.8 0.42 11.0 2.2 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF805) NADH-u_ox-rdase PF10785.9 gi|289582616|ref|YP_003481082.1| - 0.13 12.9 0.0 0.13 12.9 0.0 3.0 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit ABC_tran PF00005.27 gi|289582617|ref|YP_003481083.1| - 3.4e-28 98.9 0.0 5.8e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582617|ref|YP_003481083.1| - 3.1e-10 40.4 0.3 5.1e-06 26.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289582617|ref|YP_003481083.1| - 0.0027 18.4 0.1 0.0065 17.2 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|289582617|ref|YP_003481083.1| - 0.017 15.6 0.3 0.03 14.8 0.3 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289582617|ref|YP_003481083.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|289582617|ref|YP_003481083.1| - 0.021 14.6 0.0 0.078 12.7 0.0 2.0 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrkA_N PF02254.18 gi|289582618|ref|YP_003481084.1| - 4.3e-28 97.9 0.6 7.9e-28 97.0 0.6 1.5 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|289582618|ref|YP_003481084.1| - 1.5e-12 47.3 3.8 1.5e-12 47.3 3.8 2.4 3 0 0 3 3 3 1 Ion channel NAD_binding_7 PF13241.6 gi|289582618|ref|YP_003481084.1| - 0.0035 17.7 0.1 0.0072 16.7 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding IRK PF01007.20 gi|289582618|ref|YP_003481084.1| - 0.013 15.3 0.2 0.038 13.8 0.1 1.8 2 0 0 2 2 2 0 Inward rectifier potassium channel transmembrane domain Sacchrp_dh_NADP PF03435.18 gi|289582618|ref|YP_003481084.1| - 0.022 15.0 0.3 1.7 8.9 0.0 2.3 1 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Ion_trans PF00520.31 gi|289582618|ref|YP_003481084.1| - 0.06 12.6 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 Ion transport protein XdhC_C PF13478.6 gi|289582618|ref|YP_003481084.1| - 0.069 13.7 0.1 0.32 11.5 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain ThiS PF02597.20 gi|289582619|ref|YP_003481085.1| - 1.6e-15 57.5 0.1 1.8e-15 57.3 0.1 1.0 1 0 0 1 1 1 1 ThiS family Flagellin_IN PF07196.13 gi|289582619|ref|YP_003481085.1| - 0.032 14.4 2.2 1.9 8.7 0.3 2.2 2 0 0 2 2 2 0 Flagellin hook IN motif Acetyltransf_1 PF00583.25 gi|289582620|ref|YP_003481086.1| - 1.8e-07 31.4 0.0 7e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289582620|ref|YP_003481086.1| - 0.00077 19.4 0.0 0.0029 17.6 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289582620|ref|YP_003481086.1| - 0.0011 19.3 0.0 0.0057 17.1 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289582620|ref|YP_003481086.1| - 0.0017 18.5 0.0 0.0042 17.2 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|289582620|ref|YP_003481086.1| - 0.0024 18.5 1.3 0.023 15.4 0.1 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289582620|ref|YP_003481086.1| - 0.024 14.7 0.0 0.7 10.0 0.0 2.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|289582620|ref|YP_003481086.1| - 0.063 13.4 1.8 9.4 6.4 0.3 2.8 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.20 gi|289582621|ref|YP_003481087.1| - 3.5e-60 202.8 0.4 8e-60 201.7 0.3 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|289582621|ref|YP_003481087.1| - 7.4e-28 97.1 0.1 4.7e-27 94.5 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|289582621|ref|YP_003481087.1| - 4.4e-15 54.7 0.0 7.6e-15 54.0 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain Gly_reductase PF09338.11 gi|289582621|ref|YP_003481087.1| - 0.1 10.9 0.1 0.17 10.2 0.1 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits DUF5336 PF17270.2 gi|289582623|ref|YP_003481089.1| - 0.046 13.4 4.6 0.053 13.2 3.7 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5336) PP2C_C PF07830.13 gi|289582624|ref|YP_003481090.1| - 0.032 14.7 0.7 0.078 13.4 0.3 1.9 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Rop PF01815.16 gi|289582624|ref|YP_003481090.1| - 0.21 11.5 2.2 5.4 7.0 0.2 2.3 1 1 1 2 2 2 0 Rop protein HTH_5 PF01022.20 gi|289582625|ref|YP_003481091.1| - 1.1e-18 66.9 0.1 1.7e-16 59.8 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289582625|ref|YP_003481091.1| - 5.4e-15 55.2 1.8 5e-12 45.7 0.2 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|289582625|ref|YP_003481091.1| - 9.7e-14 51.0 1.9 1.1e-07 31.7 0.2 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|289582625|ref|YP_003481091.1| - 8.1e-13 48.1 0.5 3.5e-05 23.6 0.0 2.5 3 0 0 3 3 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|289582625|ref|YP_003481091.1| - 5.4e-09 35.8 0.3 1.6e-06 28.0 0.1 2.5 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|289582625|ref|YP_003481091.1| - 5.2e-08 32.8 0.5 0.00014 21.7 0.1 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|289582625|ref|YP_003481091.1| - 6.4e-08 32.0 1.6 7.1e-07 28.7 0.6 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|289582625|ref|YP_003481091.1| - 2.3e-06 27.9 0.0 0.0028 18.0 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|289582625|ref|YP_003481091.1| - 2.8e-06 27.0 0.6 0.011 15.5 0.1 3.2 2 2 0 2 2 2 2 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|289582625|ref|YP_003481091.1| - 5.6e-06 26.8 0.4 0.00073 20.0 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.14 gi|289582625|ref|YP_003481091.1| - 2.9e-05 23.9 0.7 0.0037 17.2 0.0 3.5 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|289582625|ref|YP_003481091.1| - 4.6e-05 22.9 0.0 0.00011 21.7 0.0 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_11 PF08279.12 gi|289582625|ref|YP_003481091.1| - 4.8e-05 23.2 0.2 0.00012 21.9 0.1 1.8 2 0 0 2 2 1 1 HTH domain Fe_dep_repress PF01325.19 gi|289582625|ref|YP_003481091.1| - 0.00013 22.1 0.0 0.00033 20.8 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|289582625|ref|YP_003481091.1| - 0.00017 21.1 0.3 0.25 11.0 0.0 2.8 2 1 0 2 2 2 2 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|289582625|ref|YP_003481091.1| - 0.00038 20.5 5.6 0.0014 18.7 0.0 3.0 3 2 0 3 3 2 1 DprA winged helix domain HxlR PF01638.17 gi|289582625|ref|YP_003481091.1| - 0.00042 20.1 0.1 0.034 14.0 0.0 2.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix DUF742 PF05331.11 gi|289582625|ref|YP_003481091.1| - 0.00044 20.0 0.0 0.2 11.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF742) DUF2250 PF10007.9 gi|289582625|ref|YP_003481091.1| - 0.00054 20.0 0.0 0.21 11.8 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|289582625|ref|YP_003481091.1| - 0.0014 18.4 0.2 0.017 14.9 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain HTH_10 PF04967.12 gi|289582625|ref|YP_003481091.1| - 0.0023 17.7 0.0 0.0072 16.1 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain DDRGK PF09756.9 gi|289582625|ref|YP_003481091.1| - 0.0043 16.7 0.0 0.0094 15.6 0.0 1.5 1 0 0 1 1 1 1 DDRGK domain BLACT_WH PF17778.1 gi|289582625|ref|YP_003481091.1| - 0.0076 16.2 0.7 0.43 10.6 0.2 2.6 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain IF2_N PF04760.15 gi|289582625|ref|YP_003481091.1| - 0.0084 15.9 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region RP-C PF03428.13 gi|289582625|ref|YP_003481091.1| - 0.015 15.0 0.1 0.061 13.0 0.0 2.0 3 0 0 3 3 3 0 Replication protein C N-terminal domain HTH_1 PF00126.27 gi|289582625|ref|YP_003481091.1| - 0.017 15.1 0.9 8.5 6.4 0.0 2.8 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|289582625|ref|YP_003481091.1| - 0.02 14.9 0.0 0.048 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.16 gi|289582625|ref|YP_003481091.1| - 0.021 14.9 0.0 9.5 6.4 0.0 2.6 2 0 0 2 2 2 0 HemN C-terminal domain FeoC PF09012.10 gi|289582625|ref|YP_003481091.1| - 0.025 14.6 0.0 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator ArsR PF09824.9 gi|289582625|ref|YP_003481091.1| - 0.027 14.1 0.0 0.1 12.2 0.0 1.9 2 1 0 2 2 2 0 ArsR transcriptional regulator DUF2513 PF10711.9 gi|289582625|ref|YP_003481091.1| - 0.032 14.5 0.0 0.09 13.1 0.0 1.8 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) Cdc6_C PF09079.11 gi|289582625|ref|YP_003481091.1| - 0.043 13.8 0.0 0.67 10.0 0.0 2.6 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_38 PF13936.6 gi|289582625|ref|YP_003481091.1| - 0.05 13.4 0.3 0.43 10.4 0.1 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|289582625|ref|YP_003481091.1| - 0.053 13.5 0.0 4.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_AsnC-type PF13404.6 gi|289582625|ref|YP_003481091.1| - 0.057 13.3 0.1 0.057 13.3 0.1 2.9 4 1 0 4 4 1 0 AsnC-type helix-turn-helix domain SMC_ScpB PF04079.16 gi|289582625|ref|YP_003481091.1| - 0.066 12.8 0.3 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB FaeA PF04703.12 gi|289582625|ref|YP_003481091.1| - 0.13 12.6 0.1 0.35 11.3 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_40 PF14493.6 gi|289582625|ref|YP_003481091.1| - 0.15 12.5 0.1 0.71 10.4 0.0 2.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|289582625|ref|YP_003481091.1| - 0.17 12.1 0.0 0.41 10.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF4010 PF13194.6 gi|289582626|ref|YP_003481092.1| - 2.4e-51 174.4 30.9 2.4e-51 174.4 30.9 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|289582626|ref|YP_003481092.1| - 2.7e-23 82.6 12.4 2.7e-23 82.6 12.4 3.9 2 1 1 3 3 3 1 MgtC family GARS_A PF01071.19 gi|289582628|ref|YP_003481094.1| - 2e-53 181.1 0.1 4.4e-53 180.0 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|289582628|ref|YP_003481094.1| - 3e-23 82.4 0.2 5.8e-23 81.5 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|289582628|ref|YP_003481094.1| - 2.3e-14 53.4 0.1 5.8e-14 52.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|289582628|ref|YP_003481094.1| - 0.00014 21.9 0.0 0.0003 20.9 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|289582628|ref|YP_003481094.1| - 0.0041 16.7 0.0 0.01 15.3 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|289582628|ref|YP_003481094.1| - 0.0058 15.9 0.0 0.028 13.7 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp DpaA_N PF16924.5 gi|289582628|ref|YP_003481094.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Peptidase_S9 PF00326.21 gi|289582630|ref|YP_003481096.1| - 2.3e-62 210.2 0.1 3.4e-62 209.7 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|289582630|ref|YP_003481096.1| - 9.2e-57 192.7 0.0 1.3e-56 192.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Esterase PF00756.20 gi|289582630|ref|YP_003481096.1| - 0.0021 17.7 0.1 0.0035 17.0 0.1 1.3 1 0 0 1 1 1 1 Putative esterase PD40 PF07676.12 gi|289582630|ref|YP_003481096.1| - 0.0045 16.9 0.3 0.2 11.7 0.1 2.8 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat Esterase_phd PF10503.9 gi|289582630|ref|YP_003481096.1| - 0.041 13.4 0.2 0.43 10.0 0.1 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase Hydrolase_4 PF12146.8 gi|289582630|ref|YP_003481096.1| - 0.042 13.1 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Serine aminopeptidase, S33 DEAD PF00270.29 gi|289582631|ref|YP_003481097.1| - 3.5e-19 69.3 0.0 2.7e-18 66.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|289582631|ref|YP_003481097.1| - 4.8e-15 56.1 0.1 3.8e-14 53.2 0.1 2.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|289582631|ref|YP_003481097.1| - 2e-10 41.0 0.0 6e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|289582631|ref|YP_003481097.1| - 3.6e-05 23.8 0.0 5.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_24 PF13578.6 gi|289582631|ref|YP_003481097.1| - 0.13 13.3 1.4 0.79 10.8 0.1 3.0 3 1 0 3 3 3 0 Methyltransferase domain RNase_H_2 PF13482.6 gi|289582632|ref|YP_003481098.1| - 4.9e-36 124.2 0.0 7.6e-36 123.6 0.0 1.3 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|289582632|ref|YP_003481098.1| - 7e-11 42.6 0.5 1.6e-10 41.4 0.1 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|289582632|ref|YP_003481098.1| - 8.3e-05 22.3 0.6 0.77 9.7 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|289582632|ref|YP_003481098.1| - 0.002 17.9 0.1 0.029 14.2 0.1 2.5 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda RNA_pol_A_CTD PF03118.15 gi|289582632|ref|YP_003481098.1| - 0.027 14.2 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain DNA_pol_B_exo2 PF10108.9 gi|289582632|ref|YP_003481098.1| - 0.033 13.9 0.0 0.073 12.7 0.0 1.5 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_2 PF12826.7 gi|289582632|ref|YP_003481098.1| - 0.11 12.6 0.2 0.25 11.5 0.2 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif VAPB_antitox PF02697.14 gi|289582633|ref|YP_003481099.1| - 6e-14 52.6 0.0 7e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Putative antitoxin DUF2201 PF09967.9 gi|289582633|ref|YP_003481099.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 VWA-like domain (DUF2201) Thymidylat_synt PF00303.19 gi|289582635|ref|YP_003481101.1| - 2.3e-94 315.5 0.0 2.8e-94 315.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.19 gi|289582636|ref|YP_003481102.1| - 1.2e-50 171.3 0.0 1.4e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase NBD_C PF17042.5 gi|289582636|ref|YP_003481102.1| - 0.039 14.5 0.1 0.052 14.0 0.1 1.2 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain Aconitase PF00330.20 gi|289582637|ref|YP_003481103.1| - 5.4e-168 559.8 0.0 7e-168 559.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|289582637|ref|YP_003481103.1| - 1.5e-39 135.3 0.0 2.8e-39 134.4 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Sm_multidrug_ex PF06695.11 gi|289582638|ref|YP_003481104.1| - 1.4e-15 58.0 0.4 1.4e-15 58.0 0.4 1.8 2 0 0 2 2 2 1 Putative small multi-drug export protein Thioredox_DsbH PF03190.15 gi|289582639|ref|YP_003481105.1| - 7.4e-76 253.6 0.1 1.3e-75 252.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|289582639|ref|YP_003481105.1| - 2.5e-09 37.2 0.0 5.2e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|289582639|ref|YP_003481105.1| - 3.7e-05 23.1 0.2 0.022 14.0 0.0 2.5 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) SHOCT PF09851.9 gi|289582640|ref|YP_003481106.1| - 2.3e-08 33.5 0.4 4.1e-08 32.7 0.4 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|289582640|ref|YP_003481106.1| - 6.6e-05 22.9 0.8 6.6e-05 22.9 0.8 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|289582640|ref|YP_003481106.1| - 0.0086 16.1 0.5 0.014 15.4 0.5 1.3 1 0 0 1 1 1 1 Gas vesicle protein G CdvA PF18822.1 gi|289582640|ref|YP_003481106.1| - 0.0099 15.7 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Thioredoxin PF00085.20 gi|289582641|ref|YP_003481107.1| - 5.1e-08 32.8 0.0 6.5e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|289582641|ref|YP_003481107.1| - 0.0099 15.7 0.0 0.015 15.1 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|289582641|ref|YP_003481107.1| - 0.039 14.4 0.1 0.11 12.9 0.1 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|289582641|ref|YP_003481107.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|289582641|ref|YP_003481107.1| - 0.065 13.6 0.0 4.5 7.7 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|289582641|ref|YP_003481107.1| - 0.095 12.8 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain ELFV_dehydrog_N PF02812.18 gi|289582642|ref|YP_003481108.1| - 4.2e-23 81.7 0.1 1.5e-22 79.8 0.0 2.0 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ELFV_dehydrog PF00208.21 gi|289582642|ref|YP_003481108.1| - 9.1e-18 64.9 1.2 2.7e-11 43.7 0.1 2.1 1 1 1 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|289582642|ref|YP_003481108.1| - 1.9e-05 24.9 0.8 4.2e-05 23.8 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|289582642|ref|YP_003481108.1| - 0.00021 21.5 0.0 0.0005 20.3 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|289582642|ref|YP_003481108.1| - 0.00067 20.2 0.0 0.012 16.2 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|289582642|ref|YP_003481108.1| - 0.013 14.8 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|289582642|ref|YP_003481108.1| - 0.017 15.0 0.3 0.037 13.9 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|289582642|ref|YP_003481108.1| - 0.021 15.2 0.0 0.098 13.0 0.0 2.1 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|289582642|ref|YP_003481108.1| - 0.024 14.2 0.6 0.056 13.0 0.3 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Shikimate_DH PF01488.20 gi|289582642|ref|YP_003481108.1| - 0.034 14.2 0.0 0.1 12.7 0.0 1.8 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|289582642|ref|YP_003481108.1| - 0.04 13.5 0.0 0.095 12.3 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|289582642|ref|YP_003481108.1| - 0.043 13.7 0.0 0.093 12.6 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding AdoHcyase_NAD PF00670.21 gi|289582642|ref|YP_003481108.1| - 0.066 13.3 1.4 0.18 11.9 0.2 2.1 2 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|289582642|ref|YP_003481108.1| - 0.085 12.2 0.4 0.52 9.6 0.2 2.1 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UPF0146 PF03686.13 gi|289582642|ref|YP_003481108.1| - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) NAD_binding_7 PF13241.6 gi|289582642|ref|YP_003481108.1| - 0.16 12.4 2.6 0.5 10.8 2.6 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.25 gi|289582643|ref|YP_003481109.1| - 6.3e-62 209.6 0.3 8.2e-62 209.3 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|289582643|ref|YP_003481109.1| - 0.00045 20.2 0.1 0.00099 19.1 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DFP PF04127.15 gi|289582643|ref|YP_003481109.1| - 0.19 11.5 0.1 0.48 10.2 0.1 1.7 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DotU PF09850.9 gi|289582645|ref|YP_003481111.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Type VI secretion system protein DotU Amidohydro_1 PF01979.20 gi|289582647|ref|YP_003481113.1| - 2.5e-22 79.7 0.1 4.1e-22 79.0 0.1 1.4 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|289582647|ref|YP_003481113.1| - 7.2e-16 58.7 0.8 5.7e-08 32.7 0.1 2.9 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|289582647|ref|YP_003481113.1| - 7.9e-05 23.0 0.0 0.00073 19.9 0.0 2.3 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain AF-4 PF05110.13 gi|289582647|ref|YP_003481113.1| - 1.1 7.2 11.0 1.4 6.9 11.0 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein GDP_Man_Dehyd PF16363.5 gi|289582648|ref|YP_003481114.1| - 3.9e-53 181.0 0.0 1.9e-46 159.0 0.0 2.7 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|289582648|ref|YP_003481114.1| - 4.4e-53 180.2 0.0 6e-53 179.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289582648|ref|YP_003481114.1| - 5.6e-17 61.6 0.0 1.9e-10 40.2 0.0 2.4 2 1 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|289582648|ref|YP_003481114.1| - 3.8e-14 52.5 0.0 4e-10 39.3 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|289582648|ref|YP_003481114.1| - 3.2e-11 42.9 0.2 1.7e-10 40.5 0.2 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|289582648|ref|YP_003481114.1| - 1.2e-07 31.1 0.0 0.00034 19.9 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|289582648|ref|YP_003481114.1| - 3.7e-05 23.7 1.7 0.00033 20.6 0.0 2.7 3 0 0 3 3 3 1 NAD(P)H-binding NmrA PF05368.13 gi|289582648|ref|YP_003481114.1| - 0.056 13.0 0.3 11 5.5 0.0 2.7 3 0 0 3 3 3 0 NmrA-like family PGK PF00162.19 gi|289582648|ref|YP_003481114.1| - 0.14 11.0 0.0 2.6 6.9 0.0 2.1 2 0 0 2 2 2 0 Phosphoglycerate kinase Yip1 PF04893.17 gi|289582649|ref|YP_003481115.1| - 1.4 8.6 22.3 1.8 8.3 22.3 1.1 1 0 0 1 1 1 0 Yip1 domain HTH_IclR PF09339.10 gi|289582650|ref|YP_003481116.1| - 2.7e-05 23.9 0.0 0.00011 22.0 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289582650|ref|YP_003481116.1| - 0.00027 20.5 0.1 0.00048 19.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289582650|ref|YP_003481116.1| - 0.0055 16.6 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|289582650|ref|YP_003481116.1| - 0.01 15.7 0.1 0.024 14.5 0.1 1.5 1 0 0 1 1 1 0 MarR family PAS_7 PF12860.7 gi|289582651|ref|YP_003481117.1| - 0.24 11.5 2.6 0.28 11.4 0.0 2.4 3 0 0 3 3 3 0 PAS fold Popeye PF04831.13 gi|289582652|ref|YP_003481118.1| - 0.1 12.8 0.4 0.17 12.0 0.2 1.5 2 0 0 2 2 2 0 Popeye protein conserved region zf-DNL PF05180.12 gi|289582653|ref|YP_003481119.1| - 0.014 15.3 0.8 0.018 15.0 0.8 1.1 1 0 0 1 1 1 0 DNL zinc finger HypA PF01155.19 gi|289582653|ref|YP_003481119.1| - 0.021 14.9 0.4 0.022 14.8 0.4 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|289582653|ref|YP_003481119.1| - 0.053 13.7 1.0 0.077 13.1 1.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|289582653|ref|YP_003481119.1| - 0.49 10.3 5.7 0.95 9.4 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HTH_20 PF12840.7 gi|289582655|ref|YP_003481121.1| - 1.6e-05 24.8 0.1 2.2e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|289582655|ref|YP_003481121.1| - 0.0028 17.5 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|289582655|ref|YP_003481121.1| - 0.0044 16.6 0.1 0.0074 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289582655|ref|YP_003481121.1| - 0.0055 16.6 0.0 0.008 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289582655|ref|YP_003481121.1| - 0.0063 16.4 0.0 0.01 15.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|289582655|ref|YP_003481121.1| - 0.033 14.0 0.1 0.048 13.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain FUR PF01475.19 gi|289582655|ref|YP_003481121.1| - 0.066 13.4 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.20 gi|289582655|ref|YP_003481121.1| - 0.081 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|289582656|ref|YP_003481122.1| - 7.5e-14 51.5 0.3 8.7e-14 51.3 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|289582656|ref|YP_003481122.1| - 0.003 17.5 0.1 0.004 17.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|289582656|ref|YP_003481122.1| - 0.019 15.2 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) DUF4364 PF14277.6 gi|289582656|ref|YP_003481122.1| - 0.054 13.2 0.1 0.06 13.1 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|289582656|ref|YP_003481122.1| - 0.07 13.6 0.0 0.075 13.5 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|289582656|ref|YP_003481122.1| - 0.097 12.5 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|289582656|ref|YP_003481122.1| - 0.15 12.2 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1616 PF07760.11 gi|289582657|ref|YP_003481123.1| - 1.3e-79 267.6 8.5 1.6e-79 267.4 8.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4981 PF16353.5 gi|289582657|ref|YP_003481123.1| - 0.042 14.3 2.2 1.5 9.4 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function(DUF4981) Phage_CII PF05269.11 gi|289582657|ref|YP_003481123.1| - 0.14 12.4 0.1 0.32 11.2 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein Chloroplast_duf PF14476.6 gi|289582658|ref|YP_003481124.1| - 0.22 10.5 0.8 0.31 10.0 0.8 1.1 1 0 0 1 1 1 0 Petal formation-expressed Hexapep PF00132.24 gi|289582659|ref|YP_003481125.1| - 2.1e-26 90.6 12.3 1.8e-09 36.9 0.2 5.2 4 1 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|289582659|ref|YP_003481125.1| - 2.8e-21 75.0 6.3 1.3e-07 31.3 0.5 4.7 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|289582660|ref|YP_003481126.1| - 3.2e-121 405.1 0.0 3.7e-121 404.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|289582660|ref|YP_003481126.1| - 2.8e-07 30.0 0.0 4.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|289582660|ref|YP_003481126.1| - 5.2e-06 25.9 0.1 4.9e-05 22.8 0.0 2.3 1 1 1 2 2 2 1 Beta-eliminating lyase GPP34 PF05719.11 gi|289582660|ref|YP_003481126.1| - 0.04 14.0 0.7 0.43 10.6 0.0 2.4 2 1 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) Zip PF02535.22 gi|289582660|ref|YP_003481126.1| - 1.7 7.8 5.3 2.8 7.1 5.3 1.3 1 0 0 1 1 1 0 ZIP Zinc transporter Trypan_PARP PF05887.11 gi|289582660|ref|YP_003481126.1| - 6.3 6.8 9.3 13 5.8 9.3 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) GFO_IDH_MocA PF01408.22 gi|289582661|ref|YP_003481127.1| - 4.2e-27 95.3 0.7 8.1e-27 94.4 0.7 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|289582661|ref|YP_003481127.1| - 6.1e-07 29.0 0.2 1.5e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|289582661|ref|YP_003481127.1| - 4.7e-05 23.6 2.5 6.7e-05 23.1 0.1 2.3 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|289582661|ref|YP_003481127.1| - 0.00016 21.3 0.2 0.00054 19.6 0.1 1.9 1 1 1 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|289582661|ref|YP_003481127.1| - 0.00023 21.7 0.0 0.00069 20.1 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|289582661|ref|YP_003481127.1| - 0.00049 20.5 0.2 0.0011 19.4 0.2 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|289582661|ref|YP_003481127.1| - 0.013 15.7 1.7 0.015 15.4 0.4 1.9 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|289582661|ref|YP_003481127.1| - 0.015 15.4 0.1 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|289582661|ref|YP_003481127.1| - 0.02 15.2 1.3 0.17 12.1 1.3 2.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_binding PF02629.19 gi|289582661|ref|YP_003481127.1| - 0.06 14.0 0.3 0.17 12.6 0.3 1.7 1 0 0 1 1 1 0 CoA binding domain UDPG_MGDP_dh_N PF03721.14 gi|289582662|ref|YP_003481128.1| - 1.2e-40 139.1 0.0 2e-40 138.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|289582662|ref|YP_003481128.1| - 1.1e-18 67.6 0.0 2.6e-18 66.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|289582662|ref|YP_003481128.1| - 1.3e-18 67.0 0.0 2.3e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|289582662|ref|YP_003481128.1| - 9.1e-06 25.9 0.1 2.6e-05 24.5 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|289582662|ref|YP_003481128.1| - 0.013 15.4 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|289582662|ref|YP_003481128.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|289582662|ref|YP_003481128.1| - 0.027 14.7 2.2 0.15 12.3 0.1 3.1 3 1 0 3 3 3 0 TrkA-N domain CoA_binding_2 PF13380.6 gi|289582662|ref|YP_003481128.1| - 0.084 13.4 0.3 0.51 10.8 0.1 2.3 2 0 0 2 2 2 0 CoA binding domain DUF3349 PF11829.8 gi|289582662|ref|YP_003481128.1| - 0.15 12.9 0.1 2.6 8.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) Glycos_transf_2 PF00535.26 gi|289582663|ref|YP_003481129.1| - 3.3e-21 75.8 0.4 1.2e-11 44.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289582663|ref|YP_003481129.1| - 0.00087 19.2 0.0 0.44 10.4 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Trypan_PARP PF05887.11 gi|289582663|ref|YP_003481129.1| - 0.026 14.5 21.2 0.18 11.8 2.5 2.6 2 1 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) ACT_6 PF13740.6 gi|289582663|ref|YP_003481129.1| - 0.2 11.6 0.3 0.69 9.9 0.0 2.0 2 0 0 2 2 2 0 ACT domain DUF354 PF04007.12 gi|289582664|ref|YP_003481130.1| - 4.9e-10 39.0 0.0 1.2e-09 37.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|289582664|ref|YP_003481130.1| - 4.9e-05 23.4 0.4 0.00014 21.9 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|289582664|ref|YP_003481130.1| - 5e-05 23.8 1.9 5e-05 23.8 1.9 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain SpaA PF17802.1 gi|289582664|ref|YP_003481130.1| - 0.021 15.1 0.0 11 6.4 0.0 2.4 2 0 0 2 2 2 0 Prealbumin-like fold domain Glyco_transf_28 PF03033.20 gi|289582664|ref|YP_003481130.1| - 0.2 11.7 0.0 0.41 10.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Glycos_transf_1 PF00534.20 gi|289582665|ref|YP_003481131.1| - 8.3e-11 41.7 0.0 1.3e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289582665|ref|YP_003481131.1| - 1.2e-10 42.0 0.0 2.6e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289582665|ref|YP_003481131.1| - 2.5e-07 31.3 1.6 8.8e-07 29.5 0.0 2.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|289582665|ref|YP_003481131.1| - 3.1e-07 30.6 0.0 9.1e-07 29.0 0.0 1.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|289582665|ref|YP_003481131.1| - 3.8e-05 23.7 0.0 8.9e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|289582665|ref|YP_003481131.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 MARVEL PF01284.23 gi|289582666|ref|YP_003481132.1| - 0.031 14.3 3.4 0.039 14.0 3.4 1.1 1 0 0 1 1 1 0 Membrane-associating domain DUF2207 PF09972.9 gi|289582666|ref|YP_003481132.1| - 0.65 8.7 3.2 0.68 8.6 3.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Trypan_PARP PF05887.11 gi|289582668|ref|YP_003481134.1| - 0.22 11.5 10.0 0.27 11.2 10.0 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Epimerase PF01370.21 gi|289582669|ref|YP_003481135.1| - 3e-29 102.2 0.0 8e-29 100.8 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289582669|ref|YP_003481135.1| - 3.8e-21 75.3 0.0 5.4e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|289582669|ref|YP_003481135.1| - 9.4e-18 64.8 0.1 1.4e-17 64.2 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|289582669|ref|YP_003481135.1| - 1.5e-14 53.8 0.0 8.5e-09 34.9 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|289582669|ref|YP_003481135.1| - 1.9e-14 53.8 0.0 2.4e-13 50.2 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|289582669|ref|YP_003481135.1| - 6.4e-10 38.6 0.0 9.8e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|289582669|ref|YP_003481135.1| - 1.9e-05 24.4 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|289582669|ref|YP_003481135.1| - 0.00044 19.5 0.0 0.026 13.7 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|289582669|ref|YP_003481135.1| - 0.028 13.9 0.0 0.063 12.7 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase DUF362 PF04015.12 gi|289582670|ref|YP_003481136.1| - 2.4e-07 31.2 0.0 4e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) GFO_IDH_MocA PF01408.22 gi|289582671|ref|YP_003481137.1| - 1.4e-23 84.0 0.1 2.6e-23 83.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|289582671|ref|YP_003481137.1| - 2.3e-06 27.6 0.0 5.4e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|289582671|ref|YP_003481137.1| - 0.0033 18.1 0.0 0.0071 17.0 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|289582671|ref|YP_003481137.1| - 0.0095 15.3 0.1 0.16 11.3 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|289582671|ref|YP_003481137.1| - 0.03 14.8 0.2 0.066 13.7 0.2 1.6 1 0 0 1 1 1 0 CoA binding domain Polysacc_deac_1 PF01522.21 gi|289582672|ref|YP_003481138.1| - 9e-06 25.6 0.0 2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Phosphodiest PF01663.22 gi|289582673|ref|YP_003481139.1| - 3.9e-45 155.0 0.2 4.9e-44 151.4 0.2 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase G_glu_transpept PF01019.21 gi|289582674|ref|YP_003481140.1| - 3.8e-158 527.4 0.0 4.4e-158 527.2 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase UBA PF00627.31 gi|289582674|ref|YP_003481140.1| - 0.066 13.1 0.1 0.26 11.2 0.1 2.0 2 0 0 2 2 2 0 UBA/TS-N domain Lactate_perm PF02652.14 gi|289582675|ref|YP_003481141.1| - 8.4e-69 232.7 24.7 2.2e-68 231.3 24.7 1.6 1 1 0 1 1 1 1 L-lactate permease Na_H_antiporter PF03553.14 gi|289582675|ref|YP_003481141.1| - 0.00016 21.0 8.8 0.00016 21.0 8.8 2.8 2 1 0 2 2 2 2 Na+/H+ antiporter family MtrF PF09472.10 gi|289582676|ref|YP_003481142.1| - 7.2 6.1 6.9 18 4.8 0.3 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) HCO3_cotransp PF00955.21 gi|289582678|ref|YP_003481144.1| - 0.0071 15.2 1.1 0.0087 14.9 1.1 1.0 1 0 0 1 1 1 1 HCO3- transporter family DUF5381 PF17353.2 gi|289582678|ref|YP_003481144.1| - 0.47 10.2 3.7 0.59 9.9 3.7 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5381) MtrB PF05440.12 gi|289582680|ref|YP_003481146.1| - 1.1 9.8 4.0 0.38 11.2 0.4 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B OrfB_Zn_ribbon PF07282.11 gi|289582682|ref|YP_003481148.1| - 1.9e-17 63.0 2.9 4.3e-17 61.8 2.9 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TAT_signal PF10518.9 gi|289582683|ref|YP_003481149.1| - 0.0061 16.4 5.7 0.012 15.4 5.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4957 PF16318.5 gi|289582683|ref|YP_003481149.1| - 0.014 15.3 0.3 0.046 13.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4957) HTH_20 PF12840.7 gi|289582684|ref|YP_003481150.1| - 0.00081 19.4 0.0 0.0056 16.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Thymopoietin PF08198.11 gi|289582684|ref|YP_003481150.1| - 0.009 15.6 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 Thymopoietin protein Acyl-CoA_dh_C PF12806.7 gi|289582684|ref|YP_003481150.1| - 0.012 15.7 0.1 0.025 14.7 0.1 1.5 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like HTH_11 PF08279.12 gi|289582684|ref|YP_003481150.1| - 0.033 14.2 0.1 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF1480 PF07351.13 gi|289582684|ref|YP_003481150.1| - 0.06 13.6 0.1 0.16 12.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1480) TFIIB PF00382.19 gi|289582685|ref|YP_003481151.1| - 3.7e-37 126.2 0.1 4.3e-18 65.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289582685|ref|YP_003481151.1| - 8.2e-17 60.5 2.8 1.7e-16 59.4 2.8 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|289582685|ref|YP_003481151.1| - 0.0071 16.1 0.0 0.027 14.2 0.0 1.9 2 0 0 2 2 2 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.17 gi|289582685|ref|YP_003481151.1| - 0.021 14.5 0.2 0.051 13.3 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|289582685|ref|YP_003481151.1| - 0.17 11.7 0.1 0.43 10.4 0.1 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain ERCC3_RAD25_C PF16203.5 gi|289582687|ref|YP_003481153.1| - 6.3e-24 84.5 0.0 9.7e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|289582687|ref|YP_003481153.1| - 2.3e-13 50.4 0.0 1.1e-12 48.3 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|289582687|ref|YP_003481153.1| - 2.9e-13 50.2 0.0 4.6e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|289582687|ref|YP_003481153.1| - 6.1e-11 41.6 0.0 7.2e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|289582687|ref|YP_003481153.1| - 2.7e-06 27.3 0.0 1.2e-05 25.2 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|289582687|ref|YP_003481153.1| - 0.0061 15.8 0.0 2.7 7.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|289582687|ref|YP_003481153.1| - 0.0065 16.6 0.3 0.056 13.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|289582687|ref|YP_003481153.1| - 0.0065 16.2 0.1 0.029 14.1 0.0 2.2 3 0 0 3 3 3 1 AAA domain HTH_20 PF12840.7 gi|289582687|ref|YP_003481153.1| - 0.044 13.8 0.4 0.24 11.5 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_25 PF13481.6 gi|289582687|ref|YP_003481153.1| - 0.077 12.6 4.3 0.13 11.8 0.1 3.1 3 1 0 3 3 3 0 AAA domain AAA PF00004.29 gi|289582687|ref|YP_003481153.1| - 0.12 12.8 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrmB PF01978.19 gi|289582687|ref|YP_003481153.1| - 0.19 11.6 0.0 0.78 9.7 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF87 PF01935.17 gi|289582689|ref|YP_003481155.1| - 1.9e-11 44.5 0.1 1.9e-11 44.5 0.1 2.8 2 2 0 2 2 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|289582689|ref|YP_003481155.1| - 7e-06 24.9 0.0 0.00043 19.0 0.0 2.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) CENP-F_leu_zip PF10473.9 gi|289582689|ref|YP_003481155.1| - 2.3e-05 24.4 26.4 0.022 14.8 4.9 3.5 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FPP PF05911.11 gi|289582689|ref|YP_003481155.1| - 0.00011 20.6 10.3 0.00015 20.1 10.3 1.2 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil CASP_C PF08172.12 gi|289582689|ref|YP_003481155.1| - 0.00043 19.7 18.7 0.00083 18.8 18.5 1.6 1 1 0 1 1 1 1 CASP C terminal CbiA PF01656.23 gi|289582689|ref|YP_003481155.1| - 0.00098 19.2 0.0 0.0026 17.8 0.0 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FliJ PF02050.16 gi|289582689|ref|YP_003481155.1| - 0.0016 18.7 10.1 0.13 12.5 4.1 2.5 2 0 0 2 2 2 2 Flagellar FliJ protein AAA_16 PF13191.6 gi|289582689|ref|YP_003481155.1| - 0.0016 18.8 0.0 0.0016 18.8 0.0 2.8 2 1 0 2 2 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|289582689|ref|YP_003481155.1| - 0.003 16.3 9.1 0.0048 15.6 9.1 1.2 1 0 0 1 1 1 1 AAA domain EzrA PF06160.12 gi|289582689|ref|YP_003481155.1| - 0.0052 15.0 16.0 0.051 11.8 6.7 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Phage_GP20 PF06810.11 gi|289582689|ref|YP_003481155.1| - 0.0052 16.6 8.9 0.014 15.2 0.4 2.9 3 0 0 3 3 2 1 Phage minor structural protein GP20 Taxilin PF09728.9 gi|289582689|ref|YP_003481155.1| - 0.0064 15.7 10.9 0.013 14.7 10.9 1.4 1 0 0 1 1 1 1 Myosin-like coiled-coil protein HOOK PF05622.12 gi|289582689|ref|YP_003481155.1| - 0.0079 14.4 19.0 0.012 13.8 19.0 1.2 1 0 0 1 1 1 1 HOOK protein Herpes_UL6 PF01763.16 gi|289582689|ref|YP_003481155.1| - 0.0084 14.7 8.9 0.17 10.4 0.8 2.2 1 1 1 2 2 2 2 Herpesvirus UL6 like APS_kinase PF01583.20 gi|289582689|ref|YP_003481155.1| - 0.011 15.6 0.0 0.035 14.0 0.0 1.8 1 0 0 1 1 1 0 Adenylylsulphate kinase FlaC_arch PF05377.11 gi|289582689|ref|YP_003481155.1| - 0.011 16.1 14.3 0.053 13.9 2.0 3.6 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Fez1 PF06818.15 gi|289582689|ref|YP_003481155.1| - 0.013 15.9 10.8 0.013 15.9 10.8 2.6 2 1 1 3 3 2 0 Fez1 DUF3138 PF11336.8 gi|289582689|ref|YP_003481155.1| - 0.016 13.8 1.7 0.095 11.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) AAA_10 PF12846.7 gi|289582689|ref|YP_003481155.1| - 0.017 14.1 1.7 0.42 9.5 0.0 2.8 2 1 1 3 3 3 0 AAA-like domain AAA PF00004.29 gi|289582689|ref|YP_003481155.1| - 0.02 15.3 0.4 0.34 11.3 0.0 3.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) HAP1_N PF04849.13 gi|289582689|ref|YP_003481155.1| - 0.025 13.8 19.4 0.043 13.0 19.4 1.3 1 0 0 1 1 1 0 HAP1 N-terminal conserved region COG5 PF10392.9 gi|289582689|ref|YP_003481155.1| - 0.05 13.8 2.1 6.3 7.0 0.0 2.8 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Prefoldin_2 PF01920.20 gi|289582689|ref|YP_003481155.1| - 0.052 13.5 19.2 0.15 12.0 4.2 3.7 3 1 1 4 4 3 0 Prefoldin subunit MAD PF05557.13 gi|289582689|ref|YP_003481155.1| - 0.055 11.8 17.6 0.084 11.2 17.6 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein KxDL PF10241.9 gi|289582689|ref|YP_003481155.1| - 0.055 13.7 6.9 2.8 8.3 0.9 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein DUF1664 PF07889.12 gi|289582689|ref|YP_003481155.1| - 0.061 13.4 9.2 1.6 8.7 1.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|289582689|ref|YP_003481155.1| - 0.062 12.2 24.0 0.03 13.2 9.9 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein Rrf2 PF02082.20 gi|289582689|ref|YP_003481155.1| - 0.073 13.4 0.1 0.29 11.5 0.1 2.0 1 0 0 1 1 1 0 Transcriptional regulator GAS PF13851.6 gi|289582689|ref|YP_003481155.1| - 0.091 12.1 15.6 0.073 12.4 5.2 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Med9 PF07544.13 gi|289582689|ref|YP_003481155.1| - 0.094 12.8 13.4 0.12 12.5 2.1 2.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 ERM PF00769.19 gi|289582689|ref|YP_003481155.1| - 0.11 12.3 29.4 0.044 13.6 14.0 2.4 1 1 1 2 2 2 0 Ezrin/radixin/moesin family MscS_porin PF12795.7 gi|289582689|ref|YP_003481155.1| - 0.12 11.9 18.0 0.28 10.7 18.0 1.6 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain TrmB PF01978.19 gi|289582689|ref|YP_003481155.1| - 0.13 12.1 1.7 0.57 10.1 0.3 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB SKA1 PF07160.12 gi|289582689|ref|YP_003481155.1| - 0.17 11.7 7.5 0.7 9.7 0.4 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 AAA_31 PF13614.6 gi|289582689|ref|YP_003481155.1| - 0.19 11.7 0.0 0.45 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain PspA_IM30 PF04012.12 gi|289582689|ref|YP_003481155.1| - 0.2 11.2 23.8 0.056 13.0 0.5 3.3 2 1 1 3 3 3 0 PspA/IM30 family TPR_MLP1_2 PF07926.12 gi|289582689|ref|YP_003481155.1| - 0.2 11.7 23.6 0.13 12.3 17.3 2.8 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DivIC PF04977.15 gi|289582689|ref|YP_003481155.1| - 0.21 11.4 21.5 0.71 9.7 4.3 3.7 2 1 1 3 3 3 0 Septum formation initiator RasGAP_C PF03836.15 gi|289582689|ref|YP_003481155.1| - 0.21 11.7 9.8 3.3 7.9 1.2 2.6 2 0 0 2 2 2 0 RasGAP C-terminus AAA_22 PF13401.6 gi|289582689|ref|YP_003481155.1| - 0.21 11.8 1.4 0.55 10.5 0.0 2.4 2 1 0 2 2 1 0 AAA domain DUF2353 PF09789.9 gi|289582689|ref|YP_003481155.1| - 0.23 10.8 16.3 0.53 9.6 16.3 1.6 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF3450 PF11932.8 gi|289582689|ref|YP_003481155.1| - 0.27 10.5 17.8 0.12 11.7 7.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|289582689|ref|YP_003481155.1| - 0.36 11.3 32.4 11 6.6 32.0 3.1 1 1 1 2 2 2 0 Apg6 coiled-coil region AAA_18 PF13238.6 gi|289582689|ref|YP_003481155.1| - 0.39 11.3 0.0 0.39 11.3 0.0 2.9 3 1 1 4 4 1 0 AAA domain KASH_CCD PF14662.6 gi|289582689|ref|YP_003481155.1| - 0.49 10.2 19.3 0.3 10.9 7.7 2.3 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Suppressor_APC PF11414.8 gi|289582689|ref|YP_003481155.1| - 0.5 10.5 12.3 0.08 13.0 7.2 2.3 2 0 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein DUF4201 PF13870.6 gi|289582689|ref|YP_003481155.1| - 0.52 10.0 19.7 3 7.6 3.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) DUF16 PF01519.16 gi|289582689|ref|YP_003481155.1| - 0.61 10.6 13.1 1.7 9.2 3.4 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 FlxA PF14282.6 gi|289582689|ref|YP_003481155.1| - 0.62 10.1 6.8 0.66 10.0 0.1 3.2 1 1 2 3 3 3 0 FlxA-like protein JIP_LZII PF16471.5 gi|289582689|ref|YP_003481155.1| - 0.62 10.3 24.7 6.9 6.9 0.7 4.4 2 2 1 3 3 3 0 JNK-interacting protein leucine zipper II DUF4795 PF16043.5 gi|289582689|ref|YP_003481155.1| - 0.81 9.3 13.7 3.3 7.3 13.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) YabA PF06156.13 gi|289582689|ref|YP_003481155.1| - 1 10.1 14.3 0.14 12.8 4.0 3.0 1 1 2 3 3 3 0 Initiation control protein YabA Cep57_CLD PF14073.6 gi|289582689|ref|YP_003481155.1| - 1.1 9.3 20.3 0.77 9.8 15.6 2.2 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Fib_alpha PF08702.10 gi|289582689|ref|YP_003481155.1| - 1.1 9.5 7.9 8.5 6.6 5.1 2.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family ADIP PF11559.8 gi|289582689|ref|YP_003481155.1| - 1.1 9.4 21.8 1.6 8.8 6.8 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding TMPIT PF07851.13 gi|289582689|ref|YP_003481155.1| - 1.1 8.4 9.3 0.79 8.9 1.7 2.2 2 0 0 2 2 2 0 TMPIT-like protein Nsp1_C PF05064.13 gi|289582689|ref|YP_003481155.1| - 1.3 8.9 15.4 0.075 12.8 3.9 3.5 3 1 1 4 4 3 0 Nsp1-like C-terminal region FH2 PF02181.23 gi|289582689|ref|YP_003481155.1| - 1.6 7.8 7.9 4.7 6.2 0.3 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain TMF_DNA_bd PF12329.8 gi|289582689|ref|YP_003481155.1| - 1.6 8.8 21.6 1.2 9.2 3.7 3.1 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Seryl_tRNA_N PF02403.22 gi|289582689|ref|YP_003481155.1| - 1.6 9.0 14.1 1.9 8.7 4.1 2.6 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HemX PF04375.14 gi|289582689|ref|YP_003481155.1| - 2 7.6 13.8 4.3 6.5 3.1 2.2 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Laminin_II PF06009.12 gi|289582689|ref|YP_003481155.1| - 2.2 8.3 12.4 7.7 6.5 0.9 2.9 2 1 1 3 3 2 0 Laminin Domain II SlyX PF04102.12 gi|289582689|ref|YP_003481155.1| - 2.2 8.9 19.7 1.6 9.4 1.7 3.7 1 1 2 3 3 3 0 SlyX RPW8 PF05659.11 gi|289582689|ref|YP_003481155.1| - 2.4 7.8 7.4 4.7 6.9 0.7 3.0 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CtIP_N PF10482.9 gi|289582689|ref|YP_003481155.1| - 2.5 8.1 20.3 2.9 8.0 3.3 3.8 3 1 1 4 4 3 0 Tumour-suppressor protein CtIP N-terminal domain DUF4763 PF15960.5 gi|289582689|ref|YP_003481155.1| - 2.7 7.3 16.1 2.2 7.5 1.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) DUF745 PF05335.13 gi|289582689|ref|YP_003481155.1| - 3 7.5 9.2 11 5.7 2.7 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF745) ZapB PF06005.12 gi|289582689|ref|YP_003481155.1| - 3.8 8.0 25.4 1.1 9.8 8.7 3.8 3 1 1 4 4 3 0 Cell division protein ZapB DUF641 PF04859.12 gi|289582689|ref|YP_003481155.1| - 3.8 7.9 18.8 7.8 6.8 7.3 2.8 2 1 0 2 2 2 0 Plant protein of unknown function (DUF641) OmpH PF03938.14 gi|289582689|ref|YP_003481155.1| - 3.8 7.8 16.2 7.7 6.9 3.9 2.7 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Spc24 PF08286.11 gi|289582689|ref|YP_003481155.1| - 4.4 7.6 21.3 16 5.8 2.6 3.6 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 GrpE PF01025.19 gi|289582689|ref|YP_003481155.1| - 5.1 6.7 15.4 5 6.8 3.2 2.6 2 0 0 2 2 2 0 GrpE DUF724 PF05266.14 gi|289582689|ref|YP_003481155.1| - 5.6 6.8 19.7 5.4 6.8 5.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF4515 PF14988.6 gi|289582689|ref|YP_003481155.1| - 6 6.7 19.7 1.6 8.5 4.1 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4515) DHR10 PF18595.1 gi|289582689|ref|YP_003481155.1| - 6.5 6.8 29.0 0.72 9.9 4.3 3.2 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain Swi5 PF07061.11 gi|289582689|ref|YP_003481155.1| - 7.1 6.8 12.0 12 6.0 1.6 4.2 3 1 0 3 3 3 0 Swi5 DUF4446 PF14584.6 gi|289582689|ref|YP_003481155.1| - 7.5 6.5 8.5 9.5 6.2 0.4 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4446) PHM7_cyt PF14703.6 gi|289582689|ref|YP_003481155.1| - 8.9 6.5 7.1 5.9 7.1 0.9 2.3 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter DUF4407 PF14362.6 gi|289582689|ref|YP_003481155.1| - 9 5.6 26.2 0.58 9.4 19.6 2.3 2 1 0 2 2 1 0 Domain of unknown function (DUF4407) HALZ PF02183.18 gi|289582689|ref|YP_003481155.1| - 9 6.6 13.8 44 4.4 5.4 4.0 3 1 0 3 3 3 0 Homeobox associated leucine zipper Fmp27_WPPW PF10359.9 gi|289582689|ref|YP_003481155.1| - 9.2 5.0 14.4 4.7 6.0 3.2 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain FapA PF03961.13 gi|289582689|ref|YP_003481155.1| - 9.6 4.7 12.5 4.6 5.7 2.1 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A DegT_DnrJ_EryC1 PF01041.17 gi|289582690|ref|YP_003481156.1| - 2e-11 43.8 0.0 1.9e-08 34.0 0.0 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Phosphodiest PF01663.22 gi|289582691|ref|YP_003481157.1| - 1.6e-39 136.5 0.0 3e-38 132.3 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Acetyltransf_6 PF13480.7 gi|289582692|ref|YP_003481158.1| - 5.6e-21 75.2 0.2 1e-20 74.3 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|289582692|ref|YP_003481158.1| - 7.1e-06 25.1 0.0 0.00019 20.4 0.0 2.1 2 0 0 2 2 2 1 FemAB family Phage_connect_1 PF05135.13 gi|289582692|ref|YP_003481158.1| - 0.1 13.1 0.1 0.3 11.6 0.1 1.7 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein YebG PF07130.12 gi|289582692|ref|YP_003481158.1| - 0.17 11.7 0.0 0.56 10.1 0.0 1.8 2 0 0 2 2 2 0 YebG protein MarR_2 PF12802.7 gi|289582693|ref|YP_003481159.1| - 0.00093 19.0 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289582693|ref|YP_003481159.1| - 0.002 17.6 0.0 0.0039 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289582693|ref|YP_003481159.1| - 0.0035 17.2 0.0 0.005 16.7 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|289582693|ref|YP_003481159.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Trypan_PARP PF05887.11 gi|289582693|ref|YP_003481159.1| - 0.02 14.8 7.1 0.026 14.5 7.1 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) GntR PF00392.21 gi|289582693|ref|YP_003481159.1| - 0.063 12.9 0.1 0.084 12.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2540 PF10802.8 gi|289582693|ref|YP_003481159.1| - 0.071 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) TrmB PF01978.19 gi|289582693|ref|YP_003481159.1| - 0.08 12.8 0.2 0.11 12.4 0.2 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|289582693|ref|YP_003481159.1| - 0.12 12.4 0.0 5.5 7.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2582 PF10771.9 gi|289582693|ref|YP_003481159.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) PGM_PMM_I PF02878.16 gi|289582694|ref|YP_003481160.1| - 5.2e-35 120.2 0.0 1.3e-34 118.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|289582694|ref|YP_003481160.1| - 1.1e-19 70.9 0.3 3.8e-19 69.2 0.3 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|289582694|ref|YP_003481160.1| - 1.3e-19 70.5 0.0 2.9e-19 69.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|289582694|ref|YP_003481160.1| - 6.7e-14 51.8 2.0 2.1e-13 50.2 2.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|289582694|ref|YP_003481160.1| - 0.65 10.2 4.0 0.28 11.3 0.4 2.2 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Zn-ribbon_8 PF09723.10 gi|289582695|ref|YP_003481161.1| - 0.019 15.1 3.0 0.073 13.2 2.3 2.0 1 1 1 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|289582695|ref|YP_003481161.1| - 0.035 13.7 0.9 0.31 10.6 0.0 2.0 2 0 0 2 2 2 0 RecR protein Vps36-NZF-N PF16988.5 gi|289582695|ref|YP_003481161.1| - 0.039 13.4 1.3 0.04 13.3 0.2 1.6 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-LITAF-like PF10601.9 gi|289582695|ref|YP_003481161.1| - 0.041 14.1 2.7 0.71 10.2 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|289582695|ref|YP_003481161.1| - 0.047 13.6 4.2 0.3 11.0 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DUF3268 PF11672.8 gi|289582695|ref|YP_003481161.1| - 0.052 13.9 0.2 0.065 13.6 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DZR PF12773.7 gi|289582695|ref|YP_003481161.1| - 0.097 12.7 2.7 0.2 11.7 2.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289582695|ref|YP_003481161.1| - 0.12 12.1 2.6 1.4 8.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|289582695|ref|YP_003481161.1| - 0.14 11.6 2.8 0.53 9.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|289582695|ref|YP_003481161.1| - 0.35 10.9 0.1 0.35 10.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NTP_transferase PF00483.23 gi|289582696|ref|YP_003481162.1| - 9.5e-38 130.2 0.0 1.7e-37 129.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|289582696|ref|YP_003481162.1| - 3.9e-17 63.1 0.2 5.5e-17 62.6 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|289582696|ref|YP_003481162.1| - 1.6e-08 33.9 7.8 0.062 13.1 0.1 5.0 5 1 1 6 6 6 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|289582696|ref|YP_003481162.1| - 3.2e-05 23.8 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|289582696|ref|YP_003481162.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF4954 PF16314.5 gi|289582696|ref|YP_003481162.1| - 0.13 10.4 0.1 0.18 9.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|289582696|ref|YP_003481162.1| - 0.2 10.6 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 L-fucokinase SIS PF01380.22 gi|289582697|ref|YP_003481163.1| - 9.3e-52 174.3 0.4 2.2e-24 85.8 1.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|289582697|ref|YP_003481163.1| - 3e-20 72.8 2.1 4.7e-20 72.2 0.1 2.2 2 1 1 3 3 3 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|289582697|ref|YP_003481163.1| - 2.5e-16 59.7 0.0 4.7e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|289582697|ref|YP_003481163.1| - 0.00068 18.5 0.1 0.0034 16.1 0.0 1.9 1 1 1 2 2 2 1 Glutamine amidotransferases class-II IceA2 PF05862.11 gi|289582697|ref|YP_003481163.1| - 0.0028 17.6 0.5 0.02 14.8 0.1 2.6 3 0 0 3 3 3 1 Helicobacter pylori IceA2 protein GATase_4 PF13230.6 gi|289582697|ref|YP_003481163.1| - 0.04 12.8 0.0 0.064 12.1 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|289582697|ref|YP_003481163.1| - 0.064 13.3 0.1 15 5.6 0.1 2.5 2 0 0 2 2 2 0 SIS domain Na_H_Exchanger PF00999.21 gi|289582699|ref|YP_003481165.1| - 8.3e-49 166.4 47.3 1.2e-48 165.8 47.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|289582699|ref|YP_003481165.1| - 5.4e-10 39.9 0.2 5.4e-10 39.9 0.2 2.1 3 0 0 3 3 3 1 Universal stress protein family HTH_10 PF04967.12 gi|289582701|ref|YP_003481167.1| - 6e-19 67.6 0.0 1.2e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289582701|ref|YP_003481167.1| - 1.9e-09 37.6 5.5 4.2e-09 36.5 5.0 1.8 1 1 1 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|289582701|ref|YP_003481167.1| - 5.2e-08 32.3 0.2 1.4e-07 30.9 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|289582701|ref|YP_003481167.1| - 1.6e-06 27.6 0.1 4.3e-06 26.2 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289582701|ref|YP_003481167.1| - 1.2e-05 25.1 0.0 3.2e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|289582701|ref|YP_003481167.1| - 4.1e-05 23.5 0.0 8.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|289582701|ref|YP_003481167.1| - 6.7e-05 22.5 0.6 0.00066 19.3 0.6 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|289582701|ref|YP_003481167.1| - 0.00037 20.2 0.2 0.00094 19.0 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 gi|289582701|ref|YP_003481167.1| - 0.00095 19.2 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 gi|289582701|ref|YP_003481167.1| - 0.0022 17.8 0.0 0.0052 16.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|289582701|ref|YP_003481167.1| - 0.0025 17.7 0.0 0.0056 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|289582701|ref|YP_003481167.1| - 0.0036 17.2 0.0 0.0098 15.9 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 gi|289582701|ref|YP_003481167.1| - 0.004 17.5 0.1 0.015 15.6 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|289582701|ref|YP_003481167.1| - 0.013 15.4 0.0 0.037 13.9 0.0 1.8 2 0 0 2 2 1 0 MarR family HTH_50 PF18024.1 gi|289582701|ref|YP_003481167.1| - 0.015 14.9 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|289582701|ref|YP_003481167.1| - 0.025 14.4 0.0 0.074 12.9 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Fe_dep_repress PF01325.19 gi|289582701|ref|YP_003481167.1| - 0.037 14.2 0.0 0.066 13.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain UPF0122 PF04297.14 gi|289582701|ref|YP_003481167.1| - 0.038 14.2 0.0 0.073 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.20 gi|289582701|ref|YP_003481167.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family P22_Cro PF14549.6 gi|289582701|ref|YP_003481167.1| - 0.047 13.5 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_1 PF00126.27 gi|289582701|ref|YP_003481167.1| - 0.061 13.3 0.3 0.29 11.1 0.1 2.2 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 gi|289582701|ref|YP_003481167.1| - 0.068 13.3 0.1 0.36 10.9 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|289582701|ref|YP_003481167.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain KORA PF16509.5 gi|289582701|ref|YP_003481167.1| - 0.087 13.1 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Sigma70_ECF PF07638.11 gi|289582701|ref|YP_003481167.1| - 0.094 12.6 0.1 0.18 11.7 0.1 1.6 1 1 0 1 1 1 0 ECF sigma factor HTH_36 PF13730.6 gi|289582701|ref|YP_003481167.1| - 0.14 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|289582701|ref|YP_003481167.1| - 0.14 11.9 0.4 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain LacI PF00356.21 gi|289582701|ref|YP_003481167.1| - 0.17 11.7 0.0 0.49 10.2 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family BAT PF15915.5 gi|289582702|ref|YP_003481168.1| - 4.4e-28 98.1 10.8 4.4e-28 98.1 10.8 6.1 7 1 0 7 7 7 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|289582702|ref|YP_003481168.1| - 1.8e-15 56.5 0.0 3.7e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|289582702|ref|YP_003481168.1| - 4e-14 52.6 0.7 6.5e-10 39.0 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|289582702|ref|YP_003481168.1| - 6.9e-12 45.6 8.9 4.4e-07 30.1 0.3 5.0 4 1 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|289582702|ref|YP_003481168.1| - 1.5e-10 40.8 0.0 0.072 13.1 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|289582702|ref|YP_003481168.1| - 4.3e-10 40.0 7.1 1.3e-08 35.3 0.1 4.1 3 1 0 3 3 2 1 GAF domain PAS_9 PF13426.7 gi|289582702|ref|YP_003481168.1| - 9.1e-08 32.3 0.0 0.00081 19.6 0.0 4.2 4 0 0 4 4 4 1 PAS domain PAS_3 PF08447.12 gi|289582702|ref|YP_003481168.1| - 5.9e-07 29.7 0.0 3e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|289582702|ref|YP_003481168.1| - 1.1e-06 29.3 0.1 9.2e-05 23.1 0.0 3.0 3 0 0 3 3 2 1 GAF domain GAF_3 PF13492.6 gi|289582702|ref|YP_003481168.1| - 9.7e-05 22.7 1.1 0.058 13.7 0.1 3.5 3 0 0 3 3 3 1 GAF domain Autoind_bind PF03472.15 gi|289582702|ref|YP_003481168.1| - 0.00061 19.3 0.1 0.0019 17.7 0.1 1.9 1 0 0 1 1 1 1 Autoinducer binding domain Sigma70_r4 PF04545.16 gi|289582702|ref|YP_003481168.1| - 0.004 16.6 0.0 0.014 14.9 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|289582702|ref|YP_003481168.1| - 0.023 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GATase_2 PF00310.21 gi|289582702|ref|YP_003481168.1| - 0.048 12.4 0.1 0.078 11.7 0.1 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II GerE PF00196.19 gi|289582702|ref|YP_003481168.1| - 0.15 11.6 0.0 0.34 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Usp PF00582.26 gi|289582703|ref|YP_003481169.1| - 1.8e-30 106.3 4.1 2.1e-30 106.1 4.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|289582703|ref|YP_003481169.1| - 0.0062 16.0 0.4 0.0077 15.7 0.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DsbD PF02683.15 gi|289582705|ref|YP_003481171.1| - 2.4e-12 47.2 20.6 3.4e-12 46.7 20.6 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.10 gi|289582706|ref|YP_003481172.1| - 2.1e-09 37.3 0.0 3e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|289582706|ref|YP_003481172.1| - 3.4e-05 23.8 0.0 4.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 gi|289582706|ref|YP_003481172.1| - 7.2e-05 22.7 0.0 0.0012 18.8 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|289582706|ref|YP_003481172.1| - 0.0013 19.0 0.0 0.0022 18.3 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like TrkA_N PF02254.18 gi|289582706|ref|YP_003481172.1| - 0.016 15.5 0.0 0.029 14.6 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Thioredoxin_2 PF13098.6 gi|289582706|ref|YP_003481172.1| - 0.051 14.0 0.0 0.078 13.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain SCO1-SenC PF02630.14 gi|289582707|ref|YP_003481173.1| - 6e-17 61.8 0.2 2.7e-14 53.2 0.0 2.2 2 0 0 2 2 2 2 SCO1/SenC AhpC-TSA PF00578.21 gi|289582707|ref|YP_003481173.1| - 0.021 14.8 0.0 0.073 13.0 0.0 1.8 2 0 0 2 2 2 0 AhpC/TSA family TAT_signal PF10518.9 gi|289582707|ref|YP_003481173.1| - 0.24 11.3 2.9 0.38 10.7 2.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Nop14 PF04147.12 gi|289582707|ref|YP_003481173.1| - 0.42 8.8 16.0 0.48 8.6 16.0 1.0 1 0 0 1 1 1 0 Nop14-like family BUD22 PF09073.10 gi|289582707|ref|YP_003481173.1| - 2.3 7.4 10.3 2.9 7.1 10.3 1.2 1 0 0 1 1 1 0 BUD22 DNA_pol_phi PF04931.13 gi|289582707|ref|YP_003481173.1| - 2.7 6.0 18.3 3.4 5.7 18.3 1.1 1 0 0 1 1 1 0 DNA polymerase phi Zip PF02535.22 gi|289582707|ref|YP_003481173.1| - 3.3 6.8 9.2 4.5 6.4 9.2 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter DUF2076 PF09849.9 gi|289582707|ref|YP_003481173.1| - 8.3 6.4 17.7 16 5.5 17.7 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Pes-10 PF07149.11 gi|289582707|ref|YP_003481173.1| - 9.9 5.1 16.5 15 4.5 16.5 1.2 1 0 0 1 1 1 0 Pes-10 zf-ribbon_3 PF13248.6 gi|289582708|ref|YP_003481174.1| - 0.00073 18.9 1.0 0.13 11.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|289582708|ref|YP_003481174.1| - 0.0028 17.6 0.4 0.0045 17.0 0.4 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289582708|ref|YP_003481174.1| - 0.004 17.2 1.3 0.93 9.7 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|289582708|ref|YP_003481174.1| - 0.0048 16.8 0.6 0.34 10.9 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|289582708|ref|YP_003481174.1| - 0.0053 16.4 1.1 0.092 12.5 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.9 gi|289582708|ref|YP_003481174.1| - 0.0057 16.7 4.4 0.14 12.3 0.7 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|289582708|ref|YP_003481174.1| - 0.0068 16.3 1.9 1.5 8.8 0.0 2.2 2 0 0 2 2 2 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|289582708|ref|YP_003481174.1| - 0.024 14.1 5.0 0.43 10.1 5.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-LITAF-like PF10601.9 gi|289582708|ref|YP_003481174.1| - 0.025 14.8 0.1 3.1 8.1 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|289582708|ref|YP_003481174.1| - 0.031 14.2 3.4 1.8 8.6 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|289582708|ref|YP_003481174.1| - 0.039 14.6 0.6 6.6 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.13 gi|289582708|ref|YP_003481174.1| - 0.069 12.8 0.9 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.12 gi|289582708|ref|YP_003481174.1| - 0.12 12.3 1.3 0.46 10.5 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|289582708|ref|YP_003481174.1| - 0.13 12.0 2.0 0.86 9.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DiS_P_DiS PF06750.13 gi|289582708|ref|YP_003481174.1| - 0.14 12.2 0.0 1.2 9.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain CpXC PF14353.6 gi|289582708|ref|YP_003481174.1| - 0.23 11.5 1.7 3.9 7.5 1.7 2.0 1 1 0 1 1 1 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|289582708|ref|YP_003481174.1| - 0.25 11.3 2.1 1.4 8.9 2.1 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Glyco_transf_20 PF00982.21 gi|289582709|ref|YP_003481175.1| - 3.4e-116 388.7 0.0 4.6e-116 388.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_trans_1_4 PF13692.6 gi|289582709|ref|YP_003481175.1| - 0.0015 19.0 0.0 0.0026 18.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|289582709|ref|YP_003481175.1| - 0.032 13.8 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Trehalose_PPase PF02358.16 gi|289582710|ref|YP_003481176.1| - 6.7e-42 143.2 0.0 8.1e-42 142.9 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase HTH_24 PF13412.6 gi|289582711|ref|YP_003481177.1| - 2.1e-07 30.4 0.0 3.2e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289582711|ref|YP_003481177.1| - 0.00011 22.0 0.0 0.00019 21.2 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|289582711|ref|YP_003481177.1| - 0.0035 17.4 0.0 0.0057 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|289582711|ref|YP_003481177.1| - 0.0096 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289582711|ref|YP_003481177.1| - 0.01 15.7 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|289582711|ref|YP_003481177.1| - 0.01 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|289582711|ref|YP_003481177.1| - 0.021 14.8 0.0 0.029 14.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_AsnC-type PF13404.6 gi|289582711|ref|YP_003481177.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain BAT PF15915.5 gi|289582713|ref|YP_003481179.1| - 7.1e-44 149.4 7.5 7.1e-44 149.4 7.5 2.9 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|289582713|ref|YP_003481179.1| - 5.8e-19 67.6 0.0 2e-18 65.9 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|289582713|ref|YP_003481179.1| - 8.6e-16 58.2 3.0 7.1e-15 55.2 0.2 3.3 3 1 0 3 3 2 1 PAS fold GAF_2 PF13185.6 gi|289582713|ref|YP_003481179.1| - 5.5e-09 36.4 0.8 6.6e-08 32.9 0.0 3.1 3 1 0 3 3 3 1 GAF domain Sigma70_r4 PF04545.16 gi|289582713|ref|YP_003481179.1| - 2.6e-05 23.6 0.0 0.00077 18.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 GAF PF01590.26 gi|289582713|ref|YP_003481179.1| - 6.7e-05 23.5 0.1 0.00068 20.3 0.0 2.5 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|289582713|ref|YP_003481179.1| - 0.00012 21.7 0.0 0.00039 20.0 0.0 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|289582713|ref|YP_003481179.1| - 0.00017 22.0 0.0 0.00076 19.8 0.0 2.1 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|289582713|ref|YP_003481179.1| - 0.0019 18.4 0.0 0.0051 17.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain HTH_20 PF12840.7 gi|289582713|ref|YP_003481179.1| - 0.0063 16.6 0.1 0.21 11.7 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain Neisseria_TspB PF05616.13 gi|289582713|ref|YP_003481179.1| - 0.0076 14.8 2.2 0.012 14.2 2.2 1.2 1 0 0 1 1 1 1 Neisseria meningitidis TspB protein Sigma70_r3 PF04539.16 gi|289582713|ref|YP_003481179.1| - 0.011 15.8 0.0 0.56 10.4 0.0 2.9 2 0 0 2 2 2 0 Sigma-70 region 3 MarR_2 PF12802.7 gi|289582713|ref|YP_003481179.1| - 0.021 14.7 0.0 0.088 12.7 0.0 2.1 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|289582713|ref|YP_003481179.1| - 0.032 13.8 0.0 0.09 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DASH_Duo1 PF08651.10 gi|289582713|ref|YP_003481179.1| - 0.037 13.8 0.1 0.1 12.4 0.1 1.7 1 0 0 1 1 1 0 DASH complex subunit Duo1 HTH_5 PF01022.20 gi|289582713|ref|YP_003481179.1| - 0.062 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MTH865 PF07747.11 gi|289582714|ref|YP_003481180.1| - 1.5e-31 107.9 0.1 1.8e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family RHH_1 PF01402.21 gi|289582715|ref|YP_003481181.1| - 0.063 13.2 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family GATase_3 PF07685.14 gi|289582716|ref|YP_003481182.1| - 1.4e-37 129.2 0.0 5.5e-37 127.3 0.0 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|289582716|ref|YP_003481182.1| - 4.3e-22 78.5 0.0 8e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|289582716|ref|YP_003481182.1| - 3.3e-18 66.2 0.0 1.1e-10 41.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain GATase PF00117.28 gi|289582716|ref|YP_003481182.1| - 0.0036 17.1 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NTPase_1 PF03266.15 gi|289582716|ref|YP_003481182.1| - 0.069 13.0 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 NTPase ABC_tran PF00005.27 gi|289582719|ref|YP_003481185.1| - 5e-27 95.1 0.0 1e-26 94.1 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|289582719|ref|YP_003481185.1| - 2.4e-10 40.7 1.1 1.9e-06 27.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|289582719|ref|YP_003481185.1| - 0.0021 18.6 0.0 0.0034 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289582719|ref|YP_003481185.1| - 0.0056 16.4 0.0 0.5 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|289582719|ref|YP_003481185.1| - 0.011 15.5 0.1 0.043 13.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|289582719|ref|YP_003481185.1| - 0.015 15.7 0.4 0.11 12.9 0.4 2.2 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|289582719|ref|YP_003481185.1| - 0.021 14.3 0.1 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289582719|ref|YP_003481185.1| - 0.034 14.4 0.1 0.29 11.4 0.1 2.4 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|289582719|ref|YP_003481185.1| - 0.045 12.4 0.8 1.7 7.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289582719|ref|YP_003481185.1| - 0.065 13.4 0.4 0.41 10.8 0.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289582719|ref|YP_003481185.1| - 0.079 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|289582719|ref|YP_003481185.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|289582719|ref|YP_003481185.1| - 0.12 12.7 0.0 2.2 8.6 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|289582719|ref|YP_003481185.1| - 0.13 12.7 0.5 0.97 9.9 0.1 2.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|289582719|ref|YP_003481185.1| - 0.18 11.6 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal MerC PF03203.14 gi|289582720|ref|YP_003481186.1| - 0.24 11.9 3.8 11 6.5 4.0 2.1 2 0 0 2 2 2 0 MerC mercury resistance protein DUF4131 PF13567.6 gi|289582720|ref|YP_003481186.1| - 7.3 6.2 6.7 1.3e+02 2.2 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) CobA_CobO_BtuR PF02572.15 gi|289582721|ref|YP_003481187.1| - 3.9e-50 170.5 0.0 4.7e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP adh_short_C2 PF13561.6 gi|289582722|ref|YP_003481188.1| - 1.2e-71 241.0 1.1 1.4e-71 240.8 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289582722|ref|YP_003481188.1| - 9.3e-54 181.9 1.6 1.1e-53 181.6 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289582722|ref|YP_003481188.1| - 5.4e-11 42.7 0.5 7.5e-11 42.3 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|289582722|ref|YP_003481188.1| - 3.8e-07 29.8 0.2 4.8e-07 29.5 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltransf_25 PF13649.6 gi|289582722|ref|YP_003481188.1| - 0.0046 17.6 0.5 0.015 16.0 0.2 1.9 2 0 0 2 2 2 1 Methyltransferase domain 3HCDH_N PF02737.18 gi|289582722|ref|YP_003481188.1| - 0.021 14.7 0.5 0.036 13.9 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SpoIIAA-like PF11964.8 gi|289582723|ref|YP_003481189.1| - 1.1e-07 32.8 0.1 1.4e-07 32.4 0.1 1.2 1 0 0 1 1 1 1 SpoIIAA-like DAO PF01266.24 gi|289582724|ref|YP_003481190.1| - 4.7e-52 177.7 8.6 5.6e-52 177.5 8.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|289582724|ref|YP_003481190.1| - 6e-06 25.7 5.2 1.3e-05 24.6 5.2 1.5 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289582724|ref|YP_003481190.1| - 2.7e-05 23.6 0.5 0.00067 19.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289582724|ref|YP_003481190.1| - 9.9e-05 21.6 8.7 0.00013 21.2 8.7 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|289582724|ref|YP_003481190.1| - 0.00043 19.8 7.6 0.0011 18.4 7.6 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|289582724|ref|YP_003481190.1| - 0.0015 18.9 0.1 0.0061 17.0 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|289582724|ref|YP_003481190.1| - 0.004 17.7 0.5 0.092 13.3 0.7 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|289582724|ref|YP_003481190.1| - 0.018 14.4 1.0 0.53 9.6 0.0 2.6 1 1 1 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.18 gi|289582724|ref|YP_003481190.1| - 0.055 13.4 0.2 0.13 12.1 0.2 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|289582724|ref|YP_003481190.1| - 0.072 13.3 5.7 0.27 11.5 2.8 3.1 3 1 0 3 3 3 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|289582724|ref|YP_003481190.1| - 0.11 12.2 0.9 0.24 11.0 0.9 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CbiJ PF02571.14 gi|289582724|ref|YP_003481190.1| - 0.14 11.6 2.5 1.6 8.2 0.0 2.7 3 0 0 3 3 3 0 Precorrin-6x reductase CbiJ/CobK Thi4 PF01946.17 gi|289582724|ref|YP_003481190.1| - 0.22 10.7 2.7 2.1 7.5 0.4 2.6 2 1 0 2 2 2 0 Thi4 family PMSR PF01625.21 gi|289582725|ref|YP_003481191.1| - 3.6e-65 218.8 0.9 4.2e-65 218.6 0.9 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|289582725|ref|YP_003481191.1| - 0.027 14.4 0.3 0.045 13.7 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) RibD_C PF01872.17 gi|289582726|ref|YP_003481192.1| - 9.1e-52 175.8 0.1 1e-51 175.6 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain HTH_24 PF13412.6 gi|289582728|ref|YP_003481194.1| - 2.4e-10 39.8 0.4 4.1e-10 39.0 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|289582728|ref|YP_003481194.1| - 2.6e-09 36.9 0.2 4.6e-09 36.1 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|289582728|ref|YP_003481194.1| - 1.6e-07 31.0 0.0 5.1e-07 29.4 0.0 1.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|289582728|ref|YP_003481194.1| - 2e-06 27.8 0.0 4.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289582728|ref|YP_003481194.1| - 2.9e-05 23.8 0.3 5.2e-05 23.0 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|289582728|ref|YP_003481194.1| - 8.2e-05 22.4 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|289582728|ref|YP_003481194.1| - 0.0012 18.8 0.0 0.0056 16.6 0.0 2.1 1 1 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|289582728|ref|YP_003481194.1| - 0.0034 17.9 0.2 0.012 16.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|289582728|ref|YP_003481194.1| - 0.0097 15.8 0.0 0.035 14.0 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|289582728|ref|YP_003481194.1| - 0.034 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rio2_N PF09202.11 gi|289582728|ref|YP_003481194.1| - 0.057 13.6 0.0 0.21 11.8 0.0 2.0 2 0 0 2 2 2 0 Rio2, N-terminal DUF2250 PF10007.9 gi|289582728|ref|YP_003481194.1| - 0.061 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) GYD PF08734.11 gi|289582728|ref|YP_003481194.1| - 0.064 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 GYD domain MarR PF01047.22 gi|289582728|ref|YP_003481194.1| - 0.083 12.8 0.0 0.31 11.0 0.0 1.9 2 0 0 2 2 2 0 MarR family Nfu_N PF08712.11 gi|289582728|ref|YP_003481194.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal HTH_5 PF01022.20 gi|289582728|ref|YP_003481194.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|289582728|ref|YP_003481194.1| - 0.15 11.7 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 OCD_Mu_crystall PF02423.15 gi|289582729|ref|YP_003481195.1| - 4.1e-95 318.4 0.9 4.8e-95 318.1 0.9 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Spore_II_R PF09551.10 gi|289582729|ref|YP_003481195.1| - 0.032 14.7 0.0 0.059 13.8 0.0 1.4 1 0 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) Shikimate_DH PF01488.20 gi|289582729|ref|YP_003481195.1| - 0.044 13.9 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase tRNA_anti-codon PF01336.25 gi|289582730|ref|YP_003481196.1| - 1.5e-07 31.3 4.4 0.33 11.0 0.0 4.2 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Metallophos_2 PF12850.7 gi|289582732|ref|YP_003481198.1| - 5.6e-09 36.4 0.0 8e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289582732|ref|YP_003481198.1| - 2e-05 25.2 0.4 5.7e-05 23.7 0.4 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase BPD_transp_2 PF02653.16 gi|289582734|ref|YP_003481200.1| - 4.1e-36 124.5 42.8 4.1e-36 124.5 42.8 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|289582735|ref|YP_003481201.1| - 5.9e-43 147.0 28.6 5.9e-43 147.0 28.6 1.9 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component E1-E2_ATPase PF00122.20 gi|289582735|ref|YP_003481201.1| - 0.1 12.1 1.4 2.2 7.8 0.1 2.7 2 0 0 2 2 2 0 E1-E2 ATPase ABC_tran PF00005.27 gi|289582736|ref|YP_003481202.1| - 9.1e-30 104.0 0.0 1.2e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582736|ref|YP_003481202.1| - 9.1e-13 48.7 0.4 2.1e-06 27.8 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|289582736|ref|YP_003481202.1| - 7.2e-09 35.4 0.1 1.3e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|289582736|ref|YP_003481202.1| - 0.00033 20.2 0.8 0.38 10.1 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|289582736|ref|YP_003481202.1| - 0.0005 20.6 1.0 0.001 19.6 1.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|289582736|ref|YP_003481202.1| - 0.0014 18.3 0.1 0.003 17.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|289582736|ref|YP_003481202.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|289582736|ref|YP_003481202.1| - 0.031 14.0 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|289582736|ref|YP_003481202.1| - 0.059 13.0 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|289582736|ref|YP_003481202.1| - 0.14 12.5 0.0 0.2 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|289582736|ref|YP_003481202.1| - 0.29 10.8 0.0 0.53 9.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|289582737|ref|YP_003481203.1| - 1.9e-31 109.4 0.0 2.6e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582737|ref|YP_003481203.1| - 5.5e-10 39.5 0.2 0.00049 20.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289582737|ref|YP_003481203.1| - 0.00011 21.7 0.1 0.01 15.3 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|289582737|ref|YP_003481203.1| - 0.00031 20.4 0.0 0.00068 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|289582737|ref|YP_003481203.1| - 0.0015 18.3 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289582737|ref|YP_003481203.1| - 0.0016 19.0 0.0 0.0022 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289582737|ref|YP_003481203.1| - 0.0021 17.8 0.0 0.014 15.2 0.0 2.0 2 1 1 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|289582737|ref|YP_003481203.1| - 0.0056 16.4 0.2 0.0075 16.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|289582737|ref|YP_003481203.1| - 0.027 14.8 0.3 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|289582737|ref|YP_003481203.1| - 0.062 13.7 0.1 0.15 12.5 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289582737|ref|YP_003481203.1| - 0.089 13.2 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|289582737|ref|YP_003481203.1| - 0.11 11.4 0.0 0.24 10.3 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.6 gi|289582737|ref|YP_003481203.1| - 0.11 12.7 0.2 0.32 11.1 0.2 1.7 2 0 0 2 2 2 0 AAA domain Spore_IV_A PF09547.10 gi|289582737|ref|YP_003481203.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) Zeta_toxin PF06414.12 gi|289582737|ref|YP_003481203.1| - 0.16 11.2 0.0 0.37 10.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Peripla_BP_6 PF13458.6 gi|289582738|ref|YP_003481204.1| - 1.8e-23 83.8 1.7 2.2e-16 60.4 0.9 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|289582738|ref|YP_003481204.1| - 5.2e-16 58.7 0.0 3e-13 49.6 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region SNF PF00209.18 gi|289582739|ref|YP_003481205.1| - 1.1e-52 179.4 32.4 8e-31 107.3 15.2 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.22 gi|289582740|ref|YP_003481206.1| - 5.4e-195 648.7 0.1 6.2e-195 648.5 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|289582740|ref|YP_003481206.1| - 3.1e-05 23.6 0.1 7.7e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) OAD_gamma PF04277.13 gi|289582741|ref|YP_003481207.1| - 0.054 14.1 2.5 0.054 14.1 2.5 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain CPSase_L_D2 PF02786.17 gi|289582742|ref|YP_003481208.1| - 3.2e-69 232.6 0.0 7e-69 231.5 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|289582742|ref|YP_003481208.1| - 1.5e-44 151.0 0.4 3.3e-44 150.0 0.4 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|289582742|ref|YP_003481208.1| - 2.3e-35 121.0 0.0 5.6e-35 119.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|289582742|ref|YP_003481208.1| - 2.9e-16 59.1 5.8 8.4e-16 57.6 5.8 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|289582742|ref|YP_003481208.1| - 1.7e-09 37.4 1.9 4.3e-05 23.2 0.4 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|289582742|ref|YP_003481208.1| - 0.00031 20.4 0.0 0.00064 19.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|289582742|ref|YP_003481208.1| - 0.00046 19.8 0.0 0.0011 18.5 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|289582742|ref|YP_003481208.1| - 0.00056 19.7 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_D23 PF16576.5 gi|289582742|ref|YP_003481208.1| - 0.0025 17.1 0.4 1.1 8.5 0.1 2.7 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|289582742|ref|YP_003481208.1| - 0.0027 18.4 1.5 3.5 8.4 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.6 gi|289582742|ref|YP_003481208.1| - 0.013 15.5 0.7 0.04 13.9 0.4 2.0 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|289582742|ref|YP_003481208.1| - 0.14 11.9 1.5 0.86 9.4 0.1 2.6 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.19 gi|289582742|ref|YP_003481208.1| - 0.15 12.0 1.3 0.4 10.6 1.3 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Nif11 PF07862.11 gi|289582742|ref|YP_003481208.1| - 0.17 12.2 0.7 4.4 7.7 0.0 3.2 3 0 0 3 3 3 0 Nif11 domain ThiS PF02597.20 gi|289582743|ref|YP_003481209.1| - 0.0007 20.2 0.0 0.0012 19.4 0.0 1.6 1 1 0 1 1 1 1 ThiS family Usp PF00582.26 gi|289582744|ref|YP_003481210.1| - 8.9e-28 97.6 1.4 8.9e-28 97.6 1.4 1.8 2 0 0 2 2 2 1 Universal stress protein family Pellino PF04710.14 gi|289582744|ref|YP_003481210.1| - 0.21 10.2 0.1 0.26 9.9 0.1 1.1 1 0 0 1 1 1 0 Pellino AMP-binding PF00501.28 gi|289582745|ref|YP_003481211.1| - 4.9e-108 361.4 0.0 6e-108 361.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289582745|ref|YP_003481211.1| - 2.8e-22 79.5 0.3 7.9e-22 78.0 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH_1 PF00378.20 gi|289582746|ref|YP_003481212.1| - 1.3e-51 175.4 0.0 1.5e-51 175.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289582746|ref|YP_003481212.1| - 4e-34 118.6 0.0 8.2e-30 104.4 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_M20 PF01546.28 gi|289582748|ref|YP_003481214.1| - 7.5e-27 94.4 1.8 1.3e-26 93.6 1.8 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|289582748|ref|YP_003481214.1| - 6.1e-09 35.9 0.0 6.1e-09 35.9 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.14 gi|289582748|ref|YP_003481214.1| - 1.9e-06 27.7 0.4 1.9e-06 27.7 0.4 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Presenilin PF01080.17 gi|289582748|ref|YP_003481214.1| - 0.00017 20.5 4.3 0.00019 20.4 4.3 1.1 1 0 0 1 1 1 1 Presenilin Paramyx_P_V_C PF03210.13 gi|289582748|ref|YP_003481214.1| - 0.029 14.2 3.8 0.049 13.4 3.8 1.3 1 0 0 1 1 1 0 Paramyxovirus P/V phosphoprotein C-terminal Trypan_PARP PF05887.11 gi|289582748|ref|YP_003481214.1| - 0.12 12.4 6.3 0.36 10.8 6.3 1.8 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) TFIIA PF03153.13 gi|289582748|ref|YP_003481214.1| - 0.17 11.8 26.7 0.25 11.3 26.7 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Pex14_N PF04695.13 gi|289582748|ref|YP_003481214.1| - 0.35 11.5 23.4 0.71 10.5 23.4 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Med15 PF09606.10 gi|289582748|ref|YP_003481214.1| - 0.63 8.7 35.2 0.9 8.2 35.2 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal DUF1387 PF07139.11 gi|289582748|ref|YP_003481214.1| - 1.3 8.7 12.3 1.8 8.2 12.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) PAT1 PF09770.9 gi|289582748|ref|YP_003481214.1| - 1.9 6.6 20.1 2.6 6.2 20.1 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 GREB1 PF15782.5 gi|289582748|ref|YP_003481214.1| - 3.6 4.6 12.5 4.7 4.2 12.5 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Dicty_REP PF05086.12 gi|289582748|ref|YP_003481214.1| - 8.2 4.3 9.6 11 3.9 9.6 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein CCSAP PF15748.5 gi|289582748|ref|YP_003481214.1| - 8.5 6.5 20.1 13 5.9 20.1 1.2 1 0 0 1 1 1 0 Centriole, cilia and spindle-associated Hid1 PF12722.7 gi|289582748|ref|YP_003481214.1| - 9.5 4.2 12.0 12 3.8 12.0 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Methyltransf_3 PF01596.17 gi|289582749|ref|YP_003481215.1| - 1.1e-17 63.9 0.0 8e-17 61.1 0.0 1.9 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|289582749|ref|YP_003481215.1| - 2.2e-13 51.1 0.3 6.5e-13 49.6 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289582749|ref|YP_003481215.1| - 1.6e-05 25.5 0.0 3.9e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582749|ref|YP_003481215.1| - 7.5e-05 22.6 0.1 0.0001 22.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582749|ref|YP_003481215.1| - 0.0084 16.8 0.1 0.022 15.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|289582749|ref|YP_003481215.1| - 0.009 15.6 0.0 0.018 14.6 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 gi|289582749|ref|YP_003481215.1| - 0.054 13.2 0.0 0.081 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Creatininase PF02633.14 gi|289582751|ref|YP_003481217.1| - 5.1e-66 222.6 1.8 6.4e-66 222.3 1.8 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NikR_C PF08753.11 gi|289582752|ref|YP_003481218.1| - 1e-20 73.7 1.3 1.5e-20 73.1 1.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|289582752|ref|YP_003481218.1| - 3.2e-07 30.0 0.0 5.9e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|289582752|ref|YP_003481218.1| - 0.0098 15.8 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicB_lk_antitox PF15919.5 gi|289582752|ref|YP_003481218.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Arc PF03869.14 gi|289582752|ref|YP_003481218.1| - 0.088 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Arc-like DNA binding domain Cupin_2 PF07883.11 gi|289582753|ref|YP_003481219.1| - 3.2e-12 46.0 0.4 7e-12 44.9 0.3 1.6 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|289582753|ref|YP_003481219.1| - 1.1e-05 25.4 0.0 1.5e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|289582753|ref|YP_003481219.1| - 2.6e-05 23.8 0.1 0.00012 21.7 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|289582753|ref|YP_003481219.1| - 0.00058 19.6 0.0 0.00068 19.4 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain EutQ PF06249.12 gi|289582753|ref|YP_003481219.1| - 0.0038 17.0 0.1 0.0068 16.2 0.1 1.4 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.18 gi|289582753|ref|YP_003481219.1| - 0.0053 16.7 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.7 gi|289582753|ref|YP_003481219.1| - 0.008 15.9 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 Cupin KduI PF04962.12 gi|289582753|ref|YP_003481219.1| - 0.021 14.2 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family CENP-C_C PF11699.8 gi|289582753|ref|YP_003481219.1| - 0.047 13.9 0.0 0.073 13.3 0.0 1.4 1 1 0 1 1 1 0 Mif2/CENP-C like FdtA PF05523.11 gi|289582753|ref|YP_003481219.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal PAS PF00989.25 gi|289582754|ref|YP_003481220.1| - 4.8e-14 52.3 0.8 1.5e-13 50.7 0.0 2.3 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|289582754|ref|YP_003481220.1| - 5.7e-12 45.5 0.3 1.6e-11 44.1 0.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|289582754|ref|YP_003481220.1| - 2.2e-08 34.3 0.8 7.8e-08 32.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|289582754|ref|YP_003481220.1| - 6.6e-08 32.4 0.0 2.1e-07 30.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|289582754|ref|YP_003481220.1| - 4.9e-07 29.9 0.0 2.5e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|289582754|ref|YP_003481220.1| - 3e-06 27.6 2.0 1.3e-05 25.6 0.3 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|289582754|ref|YP_003481220.1| - 3.8e-06 27.4 0.0 0.00016 22.2 0.0 2.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|289582754|ref|YP_003481220.1| - 5.5e-05 23.4 4.1 0.00051 20.3 0.0 3.5 4 0 0 4 4 4 1 PAS fold GAF PF01590.26 gi|289582754|ref|YP_003481220.1| - 0.00029 21.5 0.1 0.00078 20.1 0.1 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|289582754|ref|YP_003481220.1| - 0.0072 16.5 1.9 0.25 11.5 0.0 2.7 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.6 gi|289582754|ref|YP_003481220.1| - 0.028 14.7 0.1 0.07 13.5 0.1 1.6 1 0 0 1 1 1 0 GAF domain Collagen PF01391.18 gi|289582754|ref|YP_003481220.1| - 0.032 14.0 27.9 0.072 12.9 27.9 1.5 1 0 0 1 1 1 0 Collagen triple helix repeat (20 copies) 3HCDH_N PF02737.18 gi|289582755|ref|YP_003481221.1| - 1.3e-66 224.0 0.4 1.9e-66 223.4 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|289582755|ref|YP_003481221.1| - 3.4e-59 200.2 0.0 5.4e-59 199.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|289582755|ref|YP_003481221.1| - 1.2e-50 170.0 0.5 1.4e-29 102.6 0.0 3.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|289582755|ref|YP_003481221.1| - 2.8e-34 119.1 0.1 1.2e-30 107.2 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|289582755|ref|YP_003481221.1| - 5.4e-06 26.7 0.4 1.6e-05 25.2 0.4 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|289582755|ref|YP_003481221.1| - 2.6e-05 24.2 0.0 4.9e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|289582755|ref|YP_003481221.1| - 4.2e-05 24.1 1.8 0.00018 22.1 1.8 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|289582755|ref|YP_003481221.1| - 0.023 14.3 0.2 0.037 13.6 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TRCF PF03461.15 gi|289582755|ref|YP_003481221.1| - 0.023 15.0 0.0 0.057 13.8 0.0 1.6 1 0 0 1 1 1 0 TRCF domain 2-Hacid_dh_C PF02826.19 gi|289582755|ref|YP_003481221.1| - 0.037 13.4 0.8 0.39 10.0 0.8 2.3 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF3645 PF12359.8 gi|289582755|ref|YP_003481221.1| - 0.072 12.5 0.0 0.23 10.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) Pyr_redox_2 PF07992.14 gi|289582755|ref|YP_003481221.1| - 0.084 12.1 0.2 0.13 11.5 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|289582755|ref|YP_003481221.1| - 0.098 12.2 0.1 1 8.9 0.3 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase OTCace PF00185.24 gi|289582755|ref|YP_003481221.1| - 0.12 12.4 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IlvN PF07991.12 gi|289582755|ref|YP_003481221.1| - 0.45 10.1 4.5 9.4 5.8 4.5 2.3 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Acyl-CoA_dh_1 PF00441.24 gi|289582756|ref|YP_003481222.1| - 3.2e-51 173.5 4.0 5.1e-51 172.8 4.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289582756|ref|YP_003481222.1| - 1.7e-33 115.7 0.4 4e-33 114.4 0.0 1.9 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289582756|ref|YP_003481222.1| - 1.9e-28 99.4 4.7 2.7e-28 98.9 4.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289582756|ref|YP_003481222.1| - 2.2e-26 91.9 0.0 4.5e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.13 gi|289582756|ref|YP_003481222.1| - 0.027 13.5 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal 2OG-FeII_Oxy_2 PF13532.6 gi|289582756|ref|YP_003481222.1| - 0.17 12.0 0.0 0.41 10.8 0.0 1.5 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily Xan_ur_permease PF00860.20 gi|289582757|ref|YP_003481223.1| - 4.2e-85 285.8 45.3 5.1e-85 285.5 45.3 1.1 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.27 gi|289582758|ref|YP_003481224.1| - 3.4e-15 55.9 1.0 4.6e-15 55.5 1.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|289582758|ref|YP_003481224.1| - 0.00036 20.0 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|289582758|ref|YP_003481224.1| - 0.016 14.7 0.2 0.021 14.3 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_10 PF04967.12 gi|289582760|ref|YP_003481226.1| - 6e-18 64.4 0.1 1.1e-17 63.6 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|289582760|ref|YP_003481226.1| - 0.00013 21.6 0.1 0.00036 20.3 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|289582760|ref|YP_003481226.1| - 0.00044 20.1 0.2 0.0017 18.2 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|289582760|ref|YP_003481226.1| - 0.00095 18.7 0.0 0.0026 17.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|289582760|ref|YP_003481226.1| - 0.0019 17.9 0.0 0.011 15.4 0.0 2.1 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_8 PF02954.19 gi|289582760|ref|YP_003481226.1| - 0.002 17.9 0.1 0.0062 16.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|289582760|ref|YP_003481226.1| - 0.0025 17.8 0.0 0.0076 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|289582760|ref|YP_003481226.1| - 0.0051 16.3 0.4 0.015 14.8 0.4 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|289582760|ref|YP_003481226.1| - 0.007 16.0 0.1 0.46 10.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|289582760|ref|YP_003481226.1| - 0.022 14.6 0.2 0.095 12.5 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289582760|ref|YP_003481226.1| - 0.057 13.3 0.5 0.23 11.3 0.3 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|289582760|ref|YP_003481226.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_CI_repr PF07022.13 gi|289582760|ref|YP_003481226.1| - 0.068 13.3 0.3 0.26 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain Peptidase_M48 PF01435.18 gi|289582761|ref|YP_003481227.1| - 2.2e-21 76.5 0.0 1.1e-20 74.2 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|289582761|ref|YP_003481227.1| - 0.00011 21.5 0.2 0.00029 20.2 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 TrbL PF04610.14 gi|289582761|ref|YP_003481227.1| - 0.00091 19.0 0.9 0.00091 19.0 0.9 2.2 2 0 0 2 2 2 1 TrbL/VirB6 plasmid conjugal transfer protein SprT-like PF10263.9 gi|289582761|ref|YP_003481227.1| - 0.0073 16.2 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Phage-tail_3 PF13550.6 gi|289582761|ref|YP_003481227.1| - 0.016 15.1 0.6 0.03 14.2 0.6 1.5 1 0 0 1 1 1 0 Putative phage tail protein DUF2268 PF10026.9 gi|289582761|ref|YP_003481227.1| - 0.047 13.3 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2201_N PF13203.6 gi|289582761|ref|YP_003481227.1| - 0.069 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain Dicistro_VP4 PF11492.8 gi|289582761|ref|YP_003481227.1| - 0.14 12.1 2.1 1.1 9.3 0.1 2.6 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 FA_desaturase PF00487.24 gi|289582761|ref|YP_003481227.1| - 2.2 8.0 4.5 17 5.1 0.6 2.4 2 0 0 2 2 2 0 Fatty acid desaturase DUF2207 PF09972.9 gi|289582761|ref|YP_003481227.1| - 3.6 6.3 10.8 3 6.5 1.7 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) E1-E2_ATPase PF00122.20 gi|289582762|ref|YP_003481228.1| - 1.2e-55 187.8 0.9 1.2e-55 187.8 0.9 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|289582762|ref|YP_003481228.1| - 6.4e-38 131.2 2.3 1.4e-37 130.1 2.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|289582762|ref|YP_003481228.1| - 1.5e-27 95.8 2.2 7.2e-13 48.8 0.2 3.1 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.7 gi|289582762|ref|YP_003481228.1| - 0.00027 21.4 0.4 0.00088 19.7 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|289582762|ref|YP_003481228.1| - 0.0027 17.5 4.7 0.39 10.4 1.8 2.4 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Spore_YhcN_YlaJ PF09580.10 gi|289582762|ref|YP_003481228.1| - 0.022 14.8 0.1 0.055 13.6 0.1 1.6 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Hydrolase_6 PF13344.6 gi|289582762|ref|YP_003481228.1| - 0.16 12.1 0.0 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase 7TM-7TMR_HD PF07698.11 gi|289582763|ref|YP_003481229.1| - 0.016 15.0 1.4 0.02 14.7 1.4 1.1 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF202 PF02656.15 gi|289582763|ref|YP_003481229.1| - 0.02 15.3 3.1 0.027 14.9 3.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF4231 PF14015.6 gi|289582763|ref|YP_003481229.1| - 0.13 12.8 0.1 0.15 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) YdjM PF04307.14 gi|289582764|ref|YP_003481230.1| - 2.6e-13 49.6 8.9 3.8e-13 49.1 8.9 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|289582764|ref|YP_003481230.1| - 0.001 19.1 0.4 0.0016 18.4 0.4 1.5 1 1 0 1 1 1 1 Zinc dependent phospholipase C TraL PF07178.11 gi|289582764|ref|YP_003481230.1| - 0.073 13.6 2.1 1.3 9.5 0.1 2.7 3 0 0 3 3 3 0 TraL protein HhH-GPD PF00730.25 gi|289582766|ref|YP_003481232.1| - 3e-16 59.8 0.0 3.8e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|289582766|ref|YP_003481232.1| - 0.16 12.6 0.0 1 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF1062 PF06353.12 gi|289582767|ref|YP_003481233.1| - 0.33 11.8 7.1 0.55 11.0 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1062) 6PF2K PF01591.18 gi|289582767|ref|YP_003481233.1| - 4.5 6.5 8.7 0.63 9.3 4.7 1.5 2 0 0 2 2 2 0 6-phosphofructo-2-kinase peroxidase PF00141.23 gi|289582768|ref|YP_003481234.1| - 9.1e-91 303.6 0.0 1.5e-50 172.0 0.0 2.2 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|289582768|ref|YP_003481234.1| - 0.0047 16.8 0.0 0.014 15.4 0.0 1.7 1 0 0 1 1 1 1 STI1 domain RimK PF08443.11 gi|289582769|ref|YP_003481235.1| - 1.1e-24 87.1 0.0 2.1e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|289582769|ref|YP_003481235.1| - 8.3e-10 38.7 0.8 1.4e-07 31.4 0.1 2.4 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|289582769|ref|YP_003481235.1| - 6.5e-09 35.4 0.0 1.2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|289582769|ref|YP_003481235.1| - 4.2e-07 30.1 0.0 1.8e-06 28.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain R2K_3 PF14243.6 gi|289582769|ref|YP_003481235.1| - 2.8e-06 27.5 0.3 6.4e-06 26.3 0.3 1.6 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|289582769|ref|YP_003481235.1| - 0.00024 21.6 0.2 0.00087 19.8 0.2 2.0 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease R2K_2 PF18299.1 gi|289582769|ref|YP_003481235.1| - 0.0059 16.5 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 2 Asp_protease_2 PF13650.6 gi|289582769|ref|YP_003481235.1| - 0.0065 17.1 2.4 0.033 14.8 0.8 2.7 3 0 0 3 3 3 1 Aspartyl protease ATPgrasp_YheCD PF14398.6 gi|289582769|ref|YP_003481235.1| - 0.11 11.7 0.0 0.75 9.0 0.0 2.2 1 1 0 1 1 1 0 YheC/D like ATP-grasp Polysacc_synt PF01943.17 gi|289582770|ref|YP_003481236.1| - 7.2e-28 97.7 17.3 7.2e-28 97.7 17.3 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|289582770|ref|YP_003481236.1| - 1.2e-25 90.3 4.2 1.2e-25 90.3 4.2 2.1 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|289582770|ref|YP_003481236.1| - 4.8e-24 85.0 42.8 2.2e-20 73.2 20.2 3.6 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|289582770|ref|YP_003481236.1| - 4.1e-09 36.3 3.3 4.1e-09 36.3 3.3 3.8 3 2 0 3 3 3 2 MatE MurJ PF03023.14 gi|289582770|ref|YP_003481236.1| - 7.2e-07 28.2 23.1 9.3e-06 24.5 23.1 2.2 1 1 0 1 1 1 1 Lipid II flippase MurJ Acetyltransf_1 PF00583.25 gi|289582771|ref|YP_003481237.1| - 1.1e-12 48.2 0.0 2e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|289582771|ref|YP_003481237.1| - 3.1e-09 37.1 0.0 1e-08 35.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|289582771|ref|YP_003481237.1| - 5e-09 36.2 0.0 8.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|289582771|ref|YP_003481237.1| - 0.00021 21.4 0.3 0.00084 19.5 0.2 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289582771|ref|YP_003481237.1| - 0.00022 21.4 0.0 0.00031 20.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289582771|ref|YP_003481237.1| - 0.00026 20.9 0.0 0.00055 19.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|289582771|ref|YP_003481237.1| - 0.00086 19.4 0.1 0.0032 17.6 0.0 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289582771|ref|YP_003481237.1| - 0.064 13.9 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AstE_AspA PF04952.14 gi|289582772|ref|YP_003481238.1| - 3.3e-64 216.8 0.0 4.2e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.22 gi|289582773|ref|YP_003481239.1| - 1.8e-22 79.6 4.8 2.2e-22 79.3 4.8 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|289582774|ref|YP_003481240.1| - 7.5e-10 38.9 10.5 1.2e-09 38.2 10.3 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCB2_CCB4 PF11152.8 gi|289582774|ref|YP_003481240.1| - 0.028 13.7 0.2 0.042 13.2 0.1 1.4 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 Fer2_3 PF13085.6 gi|289582775|ref|YP_003481241.1| - 1.1e-32 112.3 0.3 4.1e-32 110.4 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|289582775|ref|YP_003481241.1| - 4.5e-13 49.4 3.5 1.2e-12 48.1 3.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289582775|ref|YP_003481241.1| - 4.5e-08 33.1 3.7 1.1e-07 31.9 3.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289582775|ref|YP_003481241.1| - 9.7e-07 29.3 0.9 2.6e-06 27.9 0.2 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289582775|ref|YP_003481241.1| - 3.2e-05 24.4 3.7 7.7e-05 23.2 3.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289582775|ref|YP_003481241.1| - 9.5e-05 22.5 5.8 0.00071 19.7 6.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|289582775|ref|YP_003481241.1| - 0.041 14.8 12.0 0.061 14.3 7.3 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|289582775|ref|YP_003481241.1| - 0.33 11.5 8.7 0.65 10.7 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|289582775|ref|YP_003481241.1| - 0.36 10.6 12.4 0.55 10.0 0.5 2.7 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|289582775|ref|YP_003481241.1| - 0.47 11.2 7.3 22 5.9 0.1 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|289582775|ref|YP_003481241.1| - 0.98 9.3 9.5 3.1 7.8 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|289582775|ref|YP_003481241.1| - 1.8 8.8 7.4 3.1 8.0 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|289582775|ref|YP_003481241.1| - 1.8 8.8 9.9 4.1 7.6 0.2 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|289582775|ref|YP_003481241.1| - 3.6 8.7 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|289582775|ref|YP_003481241.1| - 6.1 7.1 10.1 1.2e+02 3.0 10.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|289582776|ref|YP_003481242.1| - 5.7e-120 401.2 8.2 9.1e-120 400.5 8.2 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|289582776|ref|YP_003481242.1| - 1.3e-37 128.7 0.1 2.2e-37 127.9 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|289582776|ref|YP_003481242.1| - 1.1e-08 34.6 5.4 0.0015 17.8 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|289582776|ref|YP_003481242.1| - 0.00096 18.6 3.7 0.00096 18.6 3.7 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|289582776|ref|YP_003481242.1| - 0.001 17.9 0.9 0.0019 17.0 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|289582776|ref|YP_003481242.1| - 0.0016 17.8 1.9 0.003 16.9 1.0 1.9 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|289582776|ref|YP_003481242.1| - 0.003 17.2 9.5 0.007 16.0 7.9 2.3 1 1 1 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|289582776|ref|YP_003481242.1| - 0.0086 15.2 4.1 0.0086 15.2 4.1 1.8 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|289582776|ref|YP_003481242.1| - 0.011 15.1 1.1 0.032 13.5 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|289582776|ref|YP_003481242.1| - 0.031 13.5 1.7 0.25 10.5 0.3 2.4 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|289582776|ref|YP_003481242.1| - 0.037 13.3 1.1 0.083 12.2 1.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|289582776|ref|YP_003481242.1| - 0.091 13.2 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Amidohydro_1 PF01979.20 gi|289582777|ref|YP_003481243.1| - 3.6e-63 214.0 0.1 4.3e-63 213.7 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|289582777|ref|YP_003481243.1| - 9.2e-14 51.8 1.0 1.5e-13 51.0 0.4 1.6 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|289582777|ref|YP_003481243.1| - 0.0003 20.2 0.0 0.0005 19.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase DUF1427 PF07235.11 gi|289582778|ref|YP_003481244.1| - 0.00065 19.6 4.6 0.00074 19.4 4.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TrmB PF01978.19 gi|289582779|ref|YP_003481245.1| - 4.8e-06 26.4 0.0 5.8e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|289582779|ref|YP_003481245.1| - 5.3e-06 26.2 0.0 6.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289582779|ref|YP_003481245.1| - 5.5e-05 22.6 0.0 8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|289582779|ref|YP_003481245.1| - 7.9e-05 23.1 0.0 9.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|289582779|ref|YP_003481245.1| - 9.6e-05 22.2 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|289582779|ref|YP_003481245.1| - 0.00039 20.3 0.0 0.0009 19.2 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|289582779|ref|YP_003481245.1| - 0.00068 19.4 0.0 0.00091 19.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|289582779|ref|YP_003481245.1| - 0.0018 18.6 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|289582779|ref|YP_003481245.1| - 0.013 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|289582779|ref|YP_003481245.1| - 0.018 15.3 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.12 gi|289582779|ref|YP_003481245.1| - 0.041 14.0 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.7 gi|289582779|ref|YP_003481245.1| - 0.089 12.9 0.0 0.12 12.5 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289582779|ref|YP_003481245.1| - 0.095 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|289582779|ref|YP_003481245.1| - 0.13 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HD PF01966.22 gi|289582780|ref|YP_003481246.1| - 2.2e-08 34.4 1.6 4.4e-08 33.4 1.5 1.6 1 1 0 1 1 1 1 HD domain AhpC-TSA PF00578.21 gi|289582781|ref|YP_003481247.1| - 2.3e-32 111.5 0.0 2.7e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289582781|ref|YP_003481247.1| - 1.3e-20 73.6 0.1 1.5e-20 73.4 0.1 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|289582781|ref|YP_003481247.1| - 0.019 14.5 0.0 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF3103 PF11301.8 gi|289582781|ref|YP_003481247.1| - 0.027 13.3 0.1 0.038 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) Acyl-CoA_dh_1 PF00441.24 gi|289582782|ref|YP_003481248.1| - 5.7e-35 120.7 1.3 5.7e-35 120.7 1.3 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289582782|ref|YP_003481248.1| - 9.7e-28 97.1 0.1 2.2e-27 96.0 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289582782|ref|YP_003481248.1| - 1.8e-18 66.5 0.0 2.8e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289582782|ref|YP_003481248.1| - 3.3e-15 56.6 1.6 3.3e-15 56.6 1.6 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain MttA_Hcf106 PF02416.16 gi|289582783|ref|YP_003481249.1| - 1.7e-13 49.7 4.0 2.1e-13 49.4 4.0 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|289582783|ref|YP_003481249.1| - 0.075 14.0 0.4 0.12 13.3 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) adh_short_C2 PF13561.6 gi|289582784|ref|YP_003481250.1| - 4.1e-69 232.7 0.3 4.9e-69 232.5 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289582784|ref|YP_003481250.1| - 5.5e-56 189.1 0.1 7.1e-56 188.8 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|289582784|ref|YP_003481250.1| - 2.7e-16 60.0 0.1 3.5e-16 59.6 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|289582784|ref|YP_003481250.1| - 1.6e-05 24.9 2.7 2.6e-05 24.2 2.7 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|289582784|ref|YP_003481250.1| - 0.00019 21.0 0.2 0.00034 20.2 0.2 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|289582784|ref|YP_003481250.1| - 0.0054 15.9 1.0 0.0088 15.2 1.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain ApbA PF02558.16 gi|289582784|ref|YP_003481250.1| - 0.027 14.1 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|289582784|ref|YP_003481250.1| - 0.036 13.4 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|289582784|ref|YP_003481250.1| - 0.12 12.6 0.1 1.2 9.4 0.1 2.3 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain T2SSE PF00437.20 gi|289582785|ref|YP_003481251.1| - 4.7e-43 147.2 0.0 8.2e-43 146.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|289582785|ref|YP_003481251.1| - 0.0046 16.7 0.4 0.016 15.0 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain GerPC PF10737.9 gi|289582785|ref|YP_003481251.1| - 0.012 15.6 0.4 0.036 14.1 0.4 1.7 1 0 0 1 1 1 0 Spore germination protein GerPC T2SSF PF00482.23 gi|289582786|ref|YP_003481252.1| - 6.7e-29 100.4 4.4 9.4e-17 61.1 0.3 3.2 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Orf78 PF06024.12 gi|289582786|ref|YP_003481252.1| - 0.16 12.3 1.7 0.98 9.7 0.2 2.6 2 0 0 2 2 2 0 Orf78 (ac78) PEGA PF08308.11 gi|289582789|ref|YP_003481255.1| - 0.0023 17.8 1.7 0.011 15.6 0.6 2.5 2 0 0 2 2 2 1 PEGA domain DUF4330 PF14221.6 gi|289582789|ref|YP_003481255.1| - 0.063 13.5 0.1 0.13 12.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF948 PF06103.11 gi|289582789|ref|YP_003481255.1| - 0.15 12.3 1.0 0.32 11.3 1.0 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Pilin_N PF07790.11 gi|289582790|ref|YP_003481256.1| - 0.19 12.7 1.0 0.36 11.8 0.4 1.9 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal TMEM171 PF15471.6 gi|289582791|ref|YP_003481257.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein family 171 CheR PF01739.18 gi|289582793|ref|YP_003481259.1| - 2.3e-44 151.2 0.0 3.6e-44 150.6 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|289582793|ref|YP_003481259.1| - 6.6e-13 48.2 0.3 1.2e-12 47.3 0.3 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 gi|289582793|ref|YP_003481259.1| - 8.4e-07 29.6 0.0 0.00085 20.0 0.0 2.7 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582793|ref|YP_003481259.1| - 1.3e-06 29.1 0.1 0.00025 21.7 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582793|ref|YP_003481259.1| - 1.5e-05 24.9 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582793|ref|YP_003481259.1| - 0.00025 21.6 0.0 0.014 16.0 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582793|ref|YP_003481259.1| - 0.0077 16.1 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF3369 PF11849.8 gi|289582793|ref|YP_003481259.1| - 0.081 13.1 0.0 0.28 11.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3369) CheD PF03975.13 gi|289582794|ref|YP_003481260.1| - 6.6e-31 106.6 0.0 8.2e-31 106.3 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|289582795|ref|YP_003481261.1| - 2.1e-22 78.7 1.5 6.5e-13 48.4 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|289582795|ref|YP_003481261.1| - 4.6e-16 58.8 2.0 6.2e-07 29.5 0.1 2.8 2 1 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.12 gi|289582796|ref|YP_003481262.1| - 4.9e-10 39.1 0.1 1.1e-09 38.0 0.1 1.6 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|289582796|ref|YP_003481262.1| - 5.2e-06 26.5 0.0 8.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Hpt PF01627.23 gi|289582797|ref|YP_003481263.1| - 2.4e-20 72.6 1.0 1.3e-19 70.2 0.2 2.7 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|289582797|ref|YP_003481263.1| - 2.9e-19 69.6 0.0 9.7e-19 67.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|289582797|ref|YP_003481263.1| - 1.1e-08 34.8 0.2 1e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 CheW-like domain H-kinase_dim PF02895.14 gi|289582797|ref|YP_003481263.1| - 1.4e-08 35.0 2.0 4.8e-08 33.3 2.0 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|289582797|ref|YP_003481263.1| - 0.00011 22.2 0.3 0.00011 22.2 0.3 3.4 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain P2 PF07194.11 gi|289582797|ref|YP_003481263.1| - 0.0017 18.4 0.0 0.0074 16.3 0.0 2.2 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_3 PF13589.6 gi|289582797|ref|YP_003481263.1| - 0.006 16.4 0.0 0.02 14.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheB_methylest PF01339.17 gi|289582798|ref|YP_003481264.1| - 6.7e-56 188.7 0.1 1.3e-55 187.7 0.1 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|289582798|ref|YP_003481264.1| - 1.4e-22 80.0 0.1 3e-22 78.9 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|289582799|ref|YP_003481265.1| - 1e-31 109.4 0.3 1.1e-31 109.2 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|289582799|ref|YP_003481265.1| - 0.011 15.8 0.1 0.018 15.0 0.1 1.4 1 1 0 1 1 1 0 B12 binding domain CNV-Replicase_N PF16688.5 gi|289582799|ref|YP_003481265.1| - 0.029 14.7 0.0 0.48 10.8 0.0 2.0 1 1 1 2 2 2 0 Replicase polyprotein N-term from Coronavirus nsp1 PA PF02225.22 gi|289582799|ref|YP_003481265.1| - 0.14 12.2 0.4 0.41 10.7 0.2 1.7 1 1 1 2 2 2 0 PA domain CheW PF01584.19 gi|289582800|ref|YP_003481266.1| - 7.6e-15 54.8 0.0 1.5e-14 53.8 0.0 1.5 2 0 0 2 2 2 1 CheW-like domain CheW PF01584.19 gi|289582801|ref|YP_003481267.1| - 4.5e-09 36.1 0.0 5.5e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain DUF4307 PF14155.6 gi|289582803|ref|YP_003481269.1| - 0.01 15.7 0.0 5.5 6.9 0.0 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF4307) Phage_holin_2_4 PF16082.5 gi|289582803|ref|YP_003481269.1| - 0.047 13.4 0.1 0.047 13.4 0.1 1.6 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DUF2110 PF09883.9 gi|289582804|ref|YP_003481270.1| - 1.2e-95 319.3 0.0 1.4e-95 319.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.17 gi|289582805|ref|YP_003481271.1| - 8.2e-19 67.4 0.1 1.5e-18 66.6 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|289582805|ref|YP_003481271.1| - 0.0033 17.5 0.1 0.0076 16.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 region 3 DNA_ligase_ZBD PF03119.16 gi|289582805|ref|YP_003481271.1| - 0.011 15.7 0.1 0.024 14.7 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|289582805|ref|YP_003481271.1| - 0.037 13.9 0.4 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc-ribbons_6 PF07191.12 gi|289582805|ref|YP_003481271.1| - 0.05 13.6 0.3 0.085 12.8 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|289582805|ref|YP_003481271.1| - 0.05 13.7 1.8 0.098 12.8 1.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|289582805|ref|YP_003481271.1| - 0.054 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Sugarporin_N PF11471.8 gi|289582805|ref|YP_003481271.1| - 0.083 12.9 1.3 0.096 12.7 0.1 1.7 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension HypA PF01155.19 gi|289582805|ref|YP_003481271.1| - 0.089 12.8 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|289582805|ref|YP_003481271.1| - 0.13 11.9 0.9 7.7 6.2 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|289582805|ref|YP_003481271.1| - 0.27 11.4 2.2 1 9.5 1.8 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|289582805|ref|YP_003481271.1| - 0.56 9.8 3.5 2.5 7.7 3.2 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding AXE1 PF05448.12 gi|289582807|ref|YP_003481273.1| - 1.2e-06 27.5 0.0 0.00058 18.6 0.1 2.1 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|289582807|ref|YP_003481273.1| - 0.00022 20.8 0.0 0.00067 19.2 0.0 1.8 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|289582807|ref|YP_003481273.1| - 0.00025 21.7 5.3 0.00025 21.7 5.3 2.0 1 1 0 2 2 2 1 Alpha/beta hydrolase family DUF1100 PF06500.11 gi|289582807|ref|YP_003481273.1| - 0.00038 19.4 0.0 0.00057 18.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_3 PF07859.13 gi|289582807|ref|YP_003481273.1| - 0.00063 19.7 0.3 0.0038 17.1 0.0 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold CheR_N PF03705.15 gi|289582807|ref|YP_003481273.1| - 0.03 14.1 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain Hydrolase_4 PF12146.8 gi|289582807|ref|YP_003481273.1| - 0.061 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|289582807|ref|YP_003481273.1| - 0.16 11.5 0.0 0.43 10.2 0.0 1.7 1 1 1 2 2 2 0 alpha/beta hydrolase fold Trm56 PF01994.16 gi|289582808|ref|YP_003481274.1| - 1.1e-47 160.8 0.0 1.4e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Cupin_2 PF07883.11 gi|289582809|ref|YP_003481275.1| - 3.4e-15 55.5 0.0 6.8e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|289582809|ref|YP_003481275.1| - 3.7e-05 23.3 0.0 0.00016 21.3 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|289582809|ref|YP_003481275.1| - 0.00037 20.4 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|289582809|ref|YP_003481275.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF2593 PF10767.9 gi|289582810|ref|YP_003481276.1| - 0.024 14.7 0.2 0.03 14.4 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2593) Usp PF00582.26 gi|289582812|ref|YP_003481278.1| - 7.7e-34 117.2 3.1 1.4e-33 116.4 3.1 1.4 1 1 0 1 1 1 1 Universal stress protein family SSF PF00474.17 gi|289582813|ref|YP_003481279.1| - 7.2e-57 193.1 33.0 1e-56 192.6 33.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|289582814|ref|YP_003481280.1| - 2.4e-19 69.5 0.6 3.3e-19 69.0 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DAD PF02109.16 gi|289582814|ref|YP_003481280.1| - 0.061 13.6 0.0 0.089 13.1 0.0 1.3 1 0 0 1 1 1 0 DAD family DUF997 PF06196.12 gi|289582814|ref|YP_003481280.1| - 1.2 9.2 6.3 8.1 6.5 6.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF997) AMP-binding PF00501.28 gi|289582815|ref|YP_003481281.1| - 1.3e-88 297.5 0.1 1.5e-88 297.2 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289582815|ref|YP_003481281.1| - 2.3e-20 73.3 1.3 5e-20 72.3 1.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|289582815|ref|YP_003481281.1| - 4.1e-13 49.0 2.3 4.1e-13 49.0 2.3 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|289582816|ref|YP_003481282.1| - 1.1e-44 152.1 8.8 1.1e-44 152.1 8.8 3.3 3 1 1 4 4 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|289582816|ref|YP_003481282.1| - 2.3e-19 68.9 0.1 9.2e-19 67.0 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.6 gi|289582816|ref|YP_003481282.1| - 2.7e-09 37.5 0.2 1e-08 35.6 0.2 2.1 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|289582816|ref|YP_003481282.1| - 4.2e-09 36.6 0.0 2e-08 34.4 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|289582816|ref|YP_003481282.1| - 7.3e-08 32.6 0.8 7.3e-08 32.6 0.8 2.9 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|289582816|ref|YP_003481282.1| - 6.2e-07 29.8 0.1 4.2e-06 27.1 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|289582816|ref|YP_003481282.1| - 1.3e-06 28.3 0.0 7.6e-06 25.9 0.0 2.3 3 0 0 3 3 2 1 PAS fold Phage_integrase PF00589.22 gi|289582816|ref|YP_003481282.1| - 4.8e-06 26.5 0.0 1.3e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Phage integrase family GAF PF01590.26 gi|289582816|ref|YP_003481282.1| - 0.0013 19.4 0.0 0.0065 17.1 0.0 2.1 1 1 0 1 1 1 1 GAF domain HTH_20 PF12840.7 gi|289582816|ref|YP_003481282.1| - 0.014 15.4 0.0 0.093 12.8 0.0 2.6 1 1 0 1 1 1 0 Helix-turn-helix domain dCache_3 PF14827.6 gi|289582816|ref|YP_003481282.1| - 0.026 14.2 0.3 0.084 12.5 0.0 1.9 2 0 0 2 2 2 0 Double sensory domain of two-component sensor kinase Sigma70_r4 PF04545.16 gi|289582816|ref|YP_003481282.1| - 0.041 13.4 0.1 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_10 PF13596.6 gi|289582816|ref|YP_003481282.1| - 0.052 14.1 0.0 0.17 12.5 0.0 1.9 2 0 0 2 2 1 0 PAS domain Sigma70_r4_2 PF08281.12 gi|289582816|ref|YP_003481282.1| - 0.15 11.8 0.0 0.77 9.5 0.0 2.3 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|289582816|ref|YP_003481282.1| - 0.18 11.9 0.0 0.42 10.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain AMP-binding PF00501.28 gi|289582817|ref|YP_003481283.1| - 5.9e-91 305.2 0.0 7.5e-91 304.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289582817|ref|YP_003481283.1| - 1.3e-18 67.7 0.2 2.6e-18 66.8 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|289582817|ref|YP_003481283.1| - 2.2e-13 49.9 1.5 5.7e-13 48.6 1.5 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Usp PF00582.26 gi|289582818|ref|YP_003481284.1| - 2.6e-29 102.5 3.2 3.2e-29 102.2 3.2 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF1840 PF08895.11 gi|289582819|ref|YP_003481285.1| - 0.82 10.0 5.5 0.96 9.8 2.4 2.4 1 1 1 3 3 3 0 Domain of unknown function (DUF1840) Gly-zipper_Omp PF13488.6 gi|289582821|ref|YP_003481287.1| - 0.0078 16.2 0.3 0.014 15.4 0.3 1.3 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.15 gi|289582821|ref|YP_003481287.1| - 0.041 13.8 1.9 0.065 13.1 1.9 1.2 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|289582821|ref|YP_003481287.1| - 0.12 12.2 1.9 0.19 11.5 1.9 1.2 1 0 0 1 1 1 0 YMGG-like Gly-zipper GATase_3 PF07685.14 gi|289582823|ref|YP_003481289.1| - 1.2e-29 103.3 0.0 1.6e-29 102.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|289582823|ref|YP_003481289.1| - 7.3e-11 42.2 0.0 1.3e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|289582823|ref|YP_003481289.1| - 7.4e-09 35.7 0.0 1.3e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|289582823|ref|YP_003481289.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|289582823|ref|YP_003481289.1| - 0.032 13.9 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 PEP-utilizers PF00391.23 gi|289582823|ref|YP_003481289.1| - 0.069 12.9 0.7 0.2 11.4 0.7 1.7 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain CTP_synth_N PF06418.14 gi|289582823|ref|YP_003481289.1| - 0.11 11.8 0.1 0.26 10.6 0.1 1.5 2 0 0 2 2 2 0 CTP synthase N-terminus Xan_ur_permease PF00860.20 gi|289582825|ref|YP_003481291.1| - 3.8e-74 249.7 38.8 3.8e-74 249.7 38.8 2.3 2 1 0 2 2 2 1 Permease family HNH_2 PF13391.6 gi|289582826|ref|YP_003481292.1| - 1e-11 44.8 0.6 3.3e-11 43.2 0.6 1.8 1 1 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|289582826|ref|YP_003481292.1| - 0.021 14.7 0.1 0.044 13.6 0.1 1.5 1 1 0 1 1 1 0 HNH endonuclease DUF997 PF06196.12 gi|289582830|ref|YP_003481296.1| - 0.019 15.0 2.8 0.026 14.5 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF997) bPH_1 PF08000.11 gi|289582831|ref|YP_003481297.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain ATP-synt_I PF03899.15 gi|289582831|ref|YP_003481297.1| - 0.1 13.0 1.8 0.16 12.4 1.8 1.2 1 0 0 1 1 1 0 ATP synthase I chain OrfB_Zn_ribbon PF07282.11 gi|289582832|ref|YP_003481298.1| - 1.4e-23 82.6 0.5 3.4e-23 81.3 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289582832|ref|YP_003481298.1| - 0.018 15.3 0.0 0.04 14.1 0.0 1.5 1 0 0 1 1 1 0 Probable transposase C1_2 PF03107.16 gi|289582832|ref|YP_003481298.1| - 0.19 12.1 3.6 0.29 11.5 0.2 2.5 3 0 0 3 3 3 0 C1 domain DUF2238 PF09997.9 gi|289582833|ref|YP_003481299.1| - 0.00013 21.7 6.9 0.0014 18.4 0.7 3.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2238) IL32 PF15225.6 gi|289582833|ref|YP_003481299.1| - 0.19 12.1 0.6 0.51 10.7 0.6 1.7 1 0 0 1 1 1 0 Interleukin 32 PigN PF04987.14 gi|289582833|ref|YP_003481299.1| - 1.1 8.0 14.2 0.063 12.1 7.6 1.8 2 0 0 2 2 2 0 Phosphatidylinositolglycan class N (PIG-N) MEDS PF14417.6 gi|289582834|ref|YP_003481300.1| - 1.1e-48 165.2 2.0 1.1e-48 165.2 2.0 2.4 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|289582834|ref|YP_003481300.1| - 1.4e-27 96.4 0.0 1.7e-26 92.9 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289582834|ref|YP_003481300.1| - 3e-10 40.0 0.7 1.4e-09 37.8 0.1 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|289582834|ref|YP_003481300.1| - 1.3e-09 38.5 0.0 6e-05 23.3 0.0 3.4 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 gi|289582834|ref|YP_003481300.1| - 1.2e-08 35.7 0.0 0.00082 20.0 0.0 2.8 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|289582834|ref|YP_003481300.1| - 2.2e-08 34.5 0.0 0.011 16.1 0.0 2.5 2 0 0 2 2 2 2 GAF domain HATPase_c_5 PF14501.6 gi|289582834|ref|YP_003481300.1| - 9.9e-05 22.2 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|289582834|ref|YP_003481300.1| - 0.023 14.5 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Herpes_V23 PF01802.17 gi|289582834|ref|YP_003481300.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein ATPase PF06745.13 gi|289582834|ref|YP_003481300.1| - 0.17 11.2 0.2 0.33 10.2 0.2 1.4 1 0 0 1 1 1 0 KaiC CEP76-C2 PF15627.6 gi|289582835|ref|YP_003481301.1| - 0.021 14.4 0.1 0.024 14.2 0.1 1.0 1 0 0 1 1 1 0 CEP76 C2 domain SMP PF04927.12 gi|289582835|ref|YP_003481301.1| - 0.13 12.8 0.5 0.17 12.4 0.5 1.2 1 0 0 1 1 1 0 Seed maturation protein OrfB_Zn_ribbon PF07282.11 gi|289582836|ref|YP_003481302.1| - 4.7e-22 77.7 0.2 1.1e-21 76.5 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289582836|ref|YP_003481302.1| - 5.7e-18 65.3 2.0 9.7e-18 64.5 0.0 2.2 2 1 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|289582836|ref|YP_003481302.1| - 1.4e-08 34.1 0.3 2.8e-08 33.1 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain 4HB_MCP_1 PF12729.7 gi|289582836|ref|YP_003481302.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DZR PF12773.7 gi|289582836|ref|YP_003481302.1| - 0.17 12.0 1.5 0.39 10.8 1.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|289582836|ref|YP_003481302.1| - 0.17 12.1 6.5 0.48 10.6 1.2 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_L37e PF01907.19 gi|289582836|ref|YP_003481302.1| - 0.5 10.6 3.2 9.6 6.5 3.1 2.6 1 1 0 1 1 1 0 Ribosomal protein L37e Rubredoxin_2 PF18073.1 gi|289582836|ref|YP_003481302.1| - 8.9 6.1 6.7 2.8 7.7 2.8 2.3 2 1 1 3 3 3 0 Rubredoxin metal binding domain UbiA PF01040.18 gi|289582838|ref|YP_003481304.1| - 2.2e-45 155.0 14.8 2.7e-45 154.6 14.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family CoA_binding_2 PF13380.6 gi|289582839|ref|YP_003481305.1| - 7.2e-36 123.2 0.3 9.3e-36 122.9 0.3 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|289582839|ref|YP_003481305.1| - 1.8e-06 28.6 0.0 3.6e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|289582839|ref|YP_003481305.1| - 0.0058 17.5 0.1 0.013 16.3 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold PALP PF00291.25 gi|289582841|ref|YP_003481307.1| - 9.7e-60 202.5 1.2 1.1e-59 202.3 1.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Tropomyosin PF00261.20 gi|289582842|ref|YP_003481308.1| - 0.00084 18.8 1.9 0.00098 18.6 1.9 1.1 1 0 0 1 1 1 1 Tropomyosin BLOC1_2 PF10046.9 gi|289582842|ref|YP_003481308.1| - 0.00085 19.6 0.6 0.0011 19.2 0.6 1.2 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAP1_N PF04849.13 gi|289582842|ref|YP_003481308.1| - 0.0024 17.1 0.7 0.0026 17.0 0.7 1.1 1 0 0 1 1 1 1 HAP1 N-terminal conserved region Tropomyosin_1 PF12718.7 gi|289582842|ref|YP_003481308.1| - 0.0026 17.9 1.2 0.0042 17.2 1.2 1.3 1 0 0 1 1 1 1 Tropomyosin like ATG16 PF08614.11 gi|289582842|ref|YP_003481308.1| - 0.0028 17.9 3.2 0.0047 17.2 3.2 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|289582842|ref|YP_003481308.1| - 0.0038 17.2 0.9 0.0051 16.8 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF2730 PF10805.8 gi|289582842|ref|YP_003481308.1| - 0.0058 16.7 0.5 0.0079 16.3 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) DUF1465 PF07323.12 gi|289582842|ref|YP_003481308.1| - 0.007 16.2 0.6 0.012 15.5 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1465) TMF_TATA_bd PF12325.8 gi|289582842|ref|YP_003481308.1| - 0.0073 16.5 0.6 0.0098 16.1 0.6 1.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding AAA_13 PF13166.6 gi|289582842|ref|YP_003481308.1| - 0.01 14.6 0.8 0.012 14.3 0.8 1.1 1 0 0 1 1 1 0 AAA domain DivIC PF04977.15 gi|289582842|ref|YP_003481308.1| - 0.026 14.3 1.5 0.037 13.8 0.7 1.6 1 1 0 1 1 1 0 Septum formation initiator Sec2p PF06428.11 gi|289582842|ref|YP_003481308.1| - 0.027 14.5 1.8 0.043 13.8 1.8 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p ADIP PF11559.8 gi|289582842|ref|YP_003481308.1| - 0.031 14.4 1.8 0.04 14.0 1.8 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding GldM_N PF12081.8 gi|289582842|ref|YP_003481308.1| - 0.033 14.3 1.1 0.038 14.1 0.6 1.3 1 1 0 1 1 1 0 GldM N-terminal domain DUF948 PF06103.11 gi|289582842|ref|YP_003481308.1| - 0.068 13.4 0.4 0.1 12.8 0.4 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) CLZ PF16526.5 gi|289582842|ref|YP_003481308.1| - 0.071 13.5 0.9 0.071 13.5 0.9 1.9 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Thiamine_BP PF01910.17 gi|289582842|ref|YP_003481308.1| - 0.081 12.8 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Thiamine-binding protein Atg14 PF10186.9 gi|289582842|ref|YP_003481308.1| - 0.09 11.8 0.5 0.11 11.5 0.5 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_2 PF07716.15 gi|289582842|ref|YP_003481308.1| - 0.11 12.6 0.8 0.11 12.6 0.8 1.6 2 0 0 2 2 2 0 Basic region leucine zipper HrpB7 PF09486.10 gi|289582842|ref|YP_003481308.1| - 0.11 12.9 9.3 0.091 13.2 8.3 1.4 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) NPV_P10 PF05531.12 gi|289582842|ref|YP_003481308.1| - 0.14 12.7 2.5 0.2 12.1 2.3 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein SlyX PF04102.12 gi|289582842|ref|YP_003481308.1| - 0.16 12.6 7.6 0.082 13.5 3.8 2.1 1 1 1 2 2 2 0 SlyX Spc24 PF08286.11 gi|289582842|ref|YP_003481308.1| - 0.23 11.7 2.4 0.41 10.9 2.4 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Prominin PF05478.11 gi|289582842|ref|YP_003481308.1| - 0.31 8.9 0.4 0.37 8.7 0.4 1.0 1 0 0 1 1 1 0 Prominin FUSC PF04632.12 gi|289582842|ref|YP_003481308.1| - 0.59 8.6 1.6 0.61 8.5 1.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family HTH_10 PF04967.12 gi|289582843|ref|YP_003481309.1| - 7.1e-17 61.0 0.1 1.3e-16 60.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|289582843|ref|YP_003481309.1| - 0.00031 20.6 0.1 0.001 18.9 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|289582843|ref|YP_003481309.1| - 0.038 13.7 0.1 0.083 12.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|289582843|ref|YP_003481309.1| - 0.049 13.3 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|289582843|ref|YP_003481309.1| - 0.059 12.9 0.1 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DNA_pol_A PF00476.20 gi|289582843|ref|YP_003481309.1| - 0.14 11.2 0.1 0.21 10.6 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase family A LacI PF00356.21 gi|289582843|ref|YP_003481309.1| - 0.15 11.9 0.2 0.64 9.9 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family EamA PF00892.20 gi|289582844|ref|YP_003481310.1| - 5e-43 146.6 36.3 2.9e-26 92.3 15.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|289582844|ref|YP_003481310.1| - 0.084 12.2 12.3 0.15 11.3 12.3 1.4 1 1 0 1 1 1 0 Triose-phosphate Transporter family CRS1_YhbY PF01985.21 gi|289582845|ref|YP_003481311.1| - 1.6e-13 50.6 0.0 1.8e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF3168 PF11367.8 gi|289582845|ref|YP_003481311.1| - 0.046 13.9 2.6 0.28 11.4 1.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3168) Rpr2 PF04032.16 gi|289582846|ref|YP_003481312.1| - 2.5e-12 46.9 0.0 3.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain ERp29 PF07749.12 gi|289582846|ref|YP_003481312.1| - 0.14 13.0 0.0 0.17 12.8 0.0 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain SBP_bac_5 PF00496.22 gi|289582847|ref|YP_003481313.1| - 6.3e-45 153.7 0.1 2.1e-39 135.6 0.6 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PAP2_3 PF14378.6 gi|289582848|ref|YP_003481314.1| - 5.6e-18 65.3 17.9 5.6e-18 65.3 17.9 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|289582848|ref|YP_003481314.1| - 4.3e-13 49.2 7.1 4.3e-13 49.2 7.1 2.5 1 1 1 2 2 2 1 PAP2 superfamily DUF2613 PF11021.8 gi|289582848|ref|YP_003481314.1| - 9.2 6.5 11.4 0.24 11.5 1.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) SBP_bac_5 PF00496.22 gi|289582849|ref|YP_003481315.1| - 1.4e-43 149.3 0.0 1.8e-40 139.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PAP2_3 PF14378.6 gi|289582850|ref|YP_003481316.1| - 4.8e-18 65.5 14.6 4.8e-18 65.5 14.6 1.7 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|289582850|ref|YP_003481316.1| - 5e-13 49.0 5.1 5e-13 49.0 5.1 2.4 1 1 2 3 3 3 1 PAP2 superfamily Trypan_PARP PF05887.11 gi|289582850|ref|YP_003481316.1| - 0.042 13.8 10.4 0.078 13.0 10.4 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PetG PF02529.15 gi|289582850|ref|YP_003481316.1| - 8.6 6.3 10.7 0.87 9.5 0.7 3.3 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 MOSC PF03473.17 gi|289582852|ref|YP_003481318.1| - 1e-05 25.5 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 MOSC domain YqcI_YcgG PF08892.11 gi|289582853|ref|YP_003481319.1| - 1.6e-75 253.6 0.0 1.8e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|289582854|ref|YP_003481320.1| - 2.2e-35 122.4 0.2 2.5e-35 122.2 0.2 1.1 1 0 0 1 1 1 1 Isochorismatase family DUF2797 PF10977.8 gi|289582856|ref|YP_003481322.1| - 6.7e-32 111.2 6.1 3.5e-30 105.6 6.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) BsuPI PF12690.7 gi|289582857|ref|YP_003481323.1| - 2e-33 114.4 0.4 2.1e-33 114.3 0.4 1.0 1 0 0 1 1 1 1 Intracellular proteinase inhibitor DUF5067 PF16729.5 gi|289582857|ref|YP_003481323.1| - 0.021 14.8 0.0 0.03 14.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5067) CbiX PF01903.17 gi|289582858|ref|YP_003481324.1| - 8.4e-43 145.1 0.1 7.8e-21 74.4 0.0 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|289582858|ref|YP_003481324.1| - 1.9e-06 27.4 0.0 0.0078 15.6 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) YflT PF11181.8 gi|289582858|ref|YP_003481324.1| - 0.044 14.3 0.3 8.9 6.9 0.1 2.7 2 1 0 2 2 2 0 Heat induced stress protein YflT DR2241 PF18069.1 gi|289582859|ref|YP_003481325.1| - 6.2e-45 151.6 4.1 6.3e-45 151.6 0.3 2.3 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|289582859|ref|YP_003481325.1| - 3.6e-32 110.6 0.5 7.3e-32 109.6 0.5 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain FSA_C PF10479.9 gi|289582860|ref|YP_003481326.1| - 0.05 11.7 12.8 0.069 11.3 12.8 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus DUF3040 PF11239.8 gi|289582860|ref|YP_003481326.1| - 0.29 11.4 2.7 0.54 10.6 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Dicty_REP PF05086.12 gi|289582860|ref|YP_003481326.1| - 1.4 6.8 3.4 1.6 6.6 3.4 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Trm112p PF03966.16 gi|289582861|ref|YP_003481327.1| - 9.6e-11 42.1 0.3 1.7e-10 41.3 0.3 1.4 1 1 0 1 1 1 1 Trm112p-like protein DUF1451 PF07295.11 gi|289582861|ref|YP_003481327.1| - 0.065 13.3 0.0 0.073 13.1 0.0 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain HATPase_c PF02518.26 gi|289582862|ref|YP_003481328.1| - 6.9e-14 52.3 0.0 1.4e-13 51.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289582862|ref|YP_003481328.1| - 2.8e-13 49.7 1.4 4.2e-13 49.1 0.2 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|289582862|ref|YP_003481328.1| - 2.9e-06 27.5 0.0 1.2e-05 25.5 0.0 2.1 2 1 0 2 2 2 1 PAS domain PAS PF00989.25 gi|289582862|ref|YP_003481328.1| - 4e-06 26.8 0.0 4.5e-05 23.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|289582862|ref|YP_003481328.1| - 5.1e-06 26.4 0.1 1.7e-05 24.7 0.1 1.9 1 0 0 1 1 1 1 PAS domain GAF_2 PF13185.6 gi|289582862|ref|YP_003481328.1| - 2.1e-05 24.8 1.5 4.5e-05 23.8 0.3 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|289582862|ref|YP_003481328.1| - 9.6e-05 22.6 0.8 0.33 11.2 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.6 gi|289582862|ref|YP_003481328.1| - 0.0035 17.3 0.1 0.011 15.7 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain KinB_sensor PF16767.5 gi|289582862|ref|YP_003481328.1| - 0.037 14.5 0.0 12 6.4 0.0 2.6 2 0 0 2 2 2 0 Sensor domain of alginate biosynthesis sensor protein KinB Serglycin PF04360.12 gi|289582863|ref|YP_003481329.1| - 0.11 12.5 3.0 8.5 6.3 0.0 3.0 3 0 0 3 3 3 0 Serglycin Adenylsucc_synt PF00709.21 gi|289582864|ref|YP_003481330.1| - 1.5e-154 515.0 0.0 1.7e-154 514.8 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Phage_int_SAM_2 PF12834.7 gi|289582864|ref|YP_003481330.1| - 0.23 12.2 0.0 0.48 11.1 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal HTH_12 PF08461.10 gi|289582865|ref|YP_003481331.1| - 0.0095 15.9 0.1 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|289582865|ref|YP_003481331.1| - 0.012 15.1 0.4 0.021 14.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|289582865|ref|YP_003481331.1| - 0.024 14.5 0.3 0.041 13.8 0.1 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289582865|ref|YP_003481331.1| - 0.025 14.5 0.1 0.056 13.3 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|289582865|ref|YP_003481331.1| - 0.043 13.7 0.0 0.078 12.9 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF977 PF06163.11 gi|289582865|ref|YP_003481331.1| - 0.043 13.7 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Pox_A_type_inc PF04508.12 gi|289582866|ref|YP_003481332.1| - 7.3e-05 22.4 0.4 0.011 15.5 0.0 2.8 2 0 0 2 2 2 1 Viral A-type inclusion protein repeat ZapB PF06005.12 gi|289582866|ref|YP_003481332.1| - 0.00062 20.2 10.9 0.0021 18.4 10.9 2.0 1 0 0 1 1 1 1 Cell division protein ZapB CENP-F_leu_zip PF10473.9 gi|289582866|ref|YP_003481332.1| - 0.0009 19.3 5.8 0.002 18.2 5.8 1.5 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|289582866|ref|YP_003481332.1| - 0.0014 17.9 9.6 0.0014 17.9 9.6 2.5 1 1 0 2 2 1 1 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|289582866|ref|YP_003481332.1| - 0.0021 18.1 0.7 0.004 17.2 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) YabA PF06156.13 gi|289582866|ref|YP_003481332.1| - 0.0023 18.5 2.2 0.014 16.0 2.0 2.3 2 0 0 2 2 2 1 Initiation control protein YabA HMMR_N PF15905.5 gi|289582866|ref|YP_003481332.1| - 0.0031 17.1 4.1 0.0031 17.1 4.1 2.2 2 0 0 2 2 1 1 Hyaluronan mediated motility receptor N-terminal SKA2 PF16740.5 gi|289582866|ref|YP_003481332.1| - 0.0097 15.7 2.0 0.023 14.5 2.0 1.6 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 2 DUF4315 PF14193.6 gi|289582866|ref|YP_003481332.1| - 0.012 15.6 0.5 0.03 14.3 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) TMPIT PF07851.13 gi|289582866|ref|YP_003481332.1| - 0.012 14.9 0.2 0.012 14.9 0.2 1.8 2 0 0 2 2 1 0 TMPIT-like protein DUF4094 PF13334.6 gi|289582866|ref|YP_003481332.1| - 0.013 15.9 2.8 0.013 15.9 2.8 2.1 2 0 0 2 2 1 0 Domain of unknown function (DUF4094) Tropomyosin_1 PF12718.7 gi|289582866|ref|YP_003481332.1| - 0.017 15.3 6.6 0.07 13.3 6.6 2.1 1 0 0 1 1 1 0 Tropomyosin like JIP_LZII PF16471.5 gi|289582866|ref|YP_003481332.1| - 0.019 15.1 6.4 0.043 14.0 6.4 1.6 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II KLRAQ PF10205.9 gi|289582866|ref|YP_003481332.1| - 0.019 15.2 0.6 0.019 15.2 0.6 2.0 2 0 0 2 2 1 0 Predicted coiled-coil domain-containing protein CLZ PF16526.5 gi|289582866|ref|YP_003481332.1| - 0.02 15.3 4.9 0.02 15.3 4.9 2.2 2 0 0 2 2 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels BLOC1_2 PF10046.9 gi|289582866|ref|YP_003481332.1| - 0.026 14.8 2.9 0.076 13.3 2.9 1.8 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cnn_1N PF07989.11 gi|289582866|ref|YP_003481332.1| - 0.03 14.5 7.2 0.069 13.3 7.2 1.6 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 SPAM PF02090.15 gi|289582866|ref|YP_003481332.1| - 0.052 13.4 0.9 0.095 12.5 0.9 1.3 1 0 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein DUF4200 PF13863.6 gi|289582866|ref|YP_003481332.1| - 0.068 13.6 8.0 0.2 12.0 7.8 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) DUF3552 PF12072.8 gi|289582866|ref|YP_003481332.1| - 0.099 12.1 9.8 0.22 10.9 9.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) bZIP_1 PF00170.21 gi|289582866|ref|YP_003481332.1| - 0.11 12.7 6.6 0.91 9.7 6.6 2.3 1 1 0 1 1 1 0 bZIP transcription factor GAS PF13851.6 gi|289582866|ref|YP_003481332.1| - 0.12 11.8 7.1 0.25 10.7 7.1 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding EzrA PF06160.12 gi|289582866|ref|YP_003481332.1| - 0.18 10.0 2.6 0.26 9.4 2.6 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA HALZ PF02183.18 gi|289582866|ref|YP_003481332.1| - 0.2 11.9 2.7 0.43 10.8 2.7 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper KASH_CCD PF14662.6 gi|289582866|ref|YP_003481332.1| - 0.21 11.4 8.9 0.38 10.6 8.9 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Sec34 PF04136.15 gi|289582866|ref|YP_003481332.1| - 0.27 11.1 4.0 0.52 10.2 4.0 1.3 1 0 0 1 1 1 0 Sec34-like family UPF0242 PF06785.11 gi|289582866|ref|YP_003481332.1| - 0.3 11.2 8.9 0.61 10.2 8.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Syntaxin-6_N PF09177.11 gi|289582866|ref|YP_003481332.1| - 0.34 11.5 6.6 0.39 11.3 0.3 3.2 3 0 0 3 3 2 0 Syntaxin 6, N-terminal FlaC_arch PF05377.11 gi|289582866|ref|YP_003481332.1| - 0.84 10.1 4.5 2 8.9 3.6 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) GCN5L1 PF06320.13 gi|289582866|ref|YP_003481332.1| - 0.84 9.8 5.4 2.3 8.4 5.4 1.7 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) DUF812 PF05667.11 gi|289582866|ref|YP_003481332.1| - 1.3 7.9 24.2 1.8 7.4 24.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TMCO5 PF14992.6 gi|289582866|ref|YP_003481332.1| - 1.7 8.2 4.8 3.2 7.3 4.8 1.3 1 0 0 1 1 1 0 TMCO5 family Macoilin PF09726.9 gi|289582866|ref|YP_003481332.1| - 2 6.9 34.2 3.2 6.2 34.2 1.2 1 0 0 1 1 1 0 Macoilin family Prominin PF05478.11 gi|289582866|ref|YP_003481332.1| - 2.4 6.0 3.0 3.4 5.5 3.0 1.1 1 0 0 1 1 1 0 Prominin Seryl_tRNA_N PF02403.22 gi|289582866|ref|YP_003481332.1| - 2.7 8.3 10.4 0.35 11.1 5.7 1.9 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DivIC PF04977.15 gi|289582866|ref|YP_003481332.1| - 3.1 7.6 11.0 8 6.3 5.9 2.4 1 1 1 2 2 2 0 Septum formation initiator DUF4337 PF14235.6 gi|289582866|ref|YP_003481332.1| - 3.8 7.6 13.6 0.039 14.1 4.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) XhlA PF10779.9 gi|289582866|ref|YP_003481332.1| - 8.7 6.6 5.6 7.9 6.8 3.1 2.2 2 0 0 2 2 2 0 Haemolysin XhlA UPF0058 PF01893.16 gi|289582867|ref|YP_003481333.1| - 6.1e-34 116.2 1.1 6.9e-34 116.0 1.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF2121 PF09894.9 gi|289582867|ref|YP_003481333.1| - 0.057 13.0 0.0 0.1 12.1 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) ABC_tran PF00005.27 gi|289582868|ref|YP_003481334.1| - 2.3e-34 118.9 0.0 3.9e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|289582868|ref|YP_003481334.1| - 2.7e-10 40.3 0.3 9.5e-10 38.5 0.3 2.0 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|289582868|ref|YP_003481334.1| - 1.9e-05 24.6 0.0 0.057 13.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|289582868|ref|YP_003481334.1| - 0.0005 20.0 0.1 0.0012 18.8 0.1 1.5 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|289582868|ref|YP_003481334.1| - 0.0011 19.2 0.2 0.0059 16.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289582868|ref|YP_003481334.1| - 0.0011 19.4 0.1 0.0021 18.4 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289582868|ref|YP_003481334.1| - 0.0043 17.3 0.2 0.013 15.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|289582868|ref|YP_003481334.1| - 0.009 16.4 0.1 0.043 14.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|289582868|ref|YP_003481334.1| - 0.052 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|289582868|ref|YP_003481334.1| - 0.063 13.5 0.3 0.36 11.1 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|289582868|ref|YP_003481334.1| - 0.11 12.8 0.0 0.52 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_25 PF13649.6 gi|289582870|ref|YP_003481336.1| - 1e-16 61.4 0.1 2.5e-16 60.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582870|ref|YP_003481336.1| - 1.2e-15 58.0 0.1 1.9e-15 57.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582870|ref|YP_003481336.1| - 1.1e-10 41.5 0.0 1.6e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582870|ref|YP_003481336.1| - 9.7e-09 35.9 0.0 3e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289582870|ref|YP_003481336.1| - 2.4e-05 23.8 0.0 3.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|289582870|ref|YP_003481336.1| - 0.046 13.7 0.0 0.075 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF4611 PF15387.6 gi|289582870|ref|YP_003481336.1| - 0.077 13.2 4.0 0.17 12.1 4.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) Methyltransf_4 PF02390.17 gi|289582870|ref|YP_003481336.1| - 0.13 11.8 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF3437 PF11919.8 gi|289582870|ref|YP_003481336.1| - 0.18 11.7 0.5 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) Phage_integrase PF00589.22 gi|289582871|ref|YP_003481337.1| - 1.1e-13 51.3 0.0 2.8e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|289582871|ref|YP_003481337.1| - 0.016 15.6 2.6 0.13 12.8 0.8 2.7 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Malate_DH PF12434.8 gi|289582871|ref|YP_003481337.1| - 0.095 12.7 1.8 0.75 9.9 0.1 2.6 2 0 0 2 2 2 0 Malate dehydrogenase enzyme GntR PF00392.21 gi|289582872|ref|YP_003481338.1| - 0.0031 17.1 1.7 0.015 14.9 0.1 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|289582872|ref|YP_003481338.1| - 0.01 15.8 0.1 0.055 13.4 0.1 2.0 2 0 0 2 2 2 0 HTH domain HTH_5 PF01022.20 gi|289582872|ref|YP_003481338.1| - 0.014 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_40 PF14493.6 gi|289582872|ref|YP_003481338.1| - 0.014 15.8 0.4 0.051 14.0 0.4 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|289582872|ref|YP_003481338.1| - 0.019 15.0 0.8 0.036 14.1 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain COQ7 PF03232.13 gi|289582872|ref|YP_003481338.1| - 0.02 14.7 1.1 0.032 14.0 1.1 1.3 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 TrmB PF01978.19 gi|289582872|ref|YP_003481338.1| - 0.021 14.7 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|289582872|ref|YP_003481338.1| - 0.03 14.7 0.4 0.065 13.6 0.3 1.7 1 1 0 1 1 1 0 Penicillinase repressor DUF725 PF05267.12 gi|289582872|ref|YP_003481338.1| - 0.049 13.6 0.1 0.095 12.7 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF725) HTH_24 PF13412.6 gi|289582872|ref|YP_003481338.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|289582872|ref|YP_003481338.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain MerR_1 PF13411.6 gi|289582872|ref|YP_003481338.1| - 0.13 12.4 0.1 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 MerR HTH family regulatory protein DUF1440 PF07274.12 gi|289582875|ref|YP_003481341.1| - 0.56 10.6 4.0 1.3 9.4 0.9 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF1440) Acetyltransf_1 PF00583.25 gi|289582876|ref|YP_003481342.1| - 3.7e-10 40.0 0.0 5.8e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289582876|ref|YP_003481342.1| - 0.00022 21.2 0.0 0.00031 20.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289582876|ref|YP_003481342.1| - 0.0014 18.7 0.0 0.0025 17.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|289582876|ref|YP_003481342.1| - 0.0051 17.2 0.0 0.0081 16.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289582876|ref|YP_003481342.1| - 0.18 11.9 0.0 0.25 11.4 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain XPG_I PF00867.18 gi|289582877|ref|YP_003481343.1| - 9.5e-23 80.4 0.0 1.9e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|289582877|ref|YP_003481343.1| - 4.2e-11 43.2 0.0 7.2e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|289582877|ref|YP_003481343.1| - 0.00043 20.8 0.0 0.0012 19.4 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|289582877|ref|YP_003481343.1| - 0.0093 15.9 0.0 0.016 15.2 0.0 1.5 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain Chorismate_synt PF01264.21 gi|289582877|ref|YP_003481343.1| - 0.4 9.3 1.1 0.47 9.1 0.2 1.5 2 0 0 2 2 2 0 Chorismate synthase Bac_export_2 PF01312.19 gi|289582878|ref|YP_003481344.1| - 0.04 13.1 0.2 0.049 12.8 0.2 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family CrgA PF06781.12 gi|289582878|ref|YP_003481344.1| - 0.11 12.6 0.6 14 5.8 0.0 2.1 1 1 0 2 2 2 0 Cell division protein CrgA RskA PF10099.9 gi|289582878|ref|YP_003481344.1| - 2.1 8.6 6.5 3.2 8.0 6.5 1.4 1 1 0 1 1 1 0 Anti-sigma-K factor rskA Pyr_redox_2 PF07992.14 gi|289582879|ref|YP_003481345.1| - 5.6e-29 101.3 0.2 8.4e-29 100.7 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289582879|ref|YP_003481345.1| - 4.3e-14 52.8 0.1 4e-10 40.1 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289582879|ref|YP_003481345.1| - 2.5e-06 27.3 6.3 0.11 12.1 0.3 3.9 3 1 2 5 5 5 3 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|289582879|ref|YP_003481345.1| - 0.002 17.3 0.6 0.17 10.9 0.0 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|289582879|ref|YP_003481345.1| - 0.029 14.6 0.0 3.3 8.0 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|289582879|ref|YP_003481345.1| - 0.034 14.1 3.5 2.2 8.3 0.0 3.6 3 2 1 4 4 4 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|289582879|ref|YP_003481345.1| - 0.097 12.9 0.0 12 6.2 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain GIDA PF01134.22 gi|289582879|ref|YP_003481345.1| - 0.23 10.5 1.4 2.8 6.9 0.0 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A Invasin_D3 PF09134.10 gi|289582880|ref|YP_003481346.1| - 0.014 15.6 0.1 0.042 14.2 0.1 1.8 1 1 1 2 2 2 0 Invasin, domain 3 MDD_C PF18376.1 gi|289582881|ref|YP_003481347.1| - 5.5e-06 26.2 0.0 8.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|289582881|ref|YP_003481347.1| - 9.4e-06 25.8 5.2 7.1e-05 23.0 5.2 2.3 1 1 0 1 1 1 1 GHMP kinases N terminal domain TarH PF02203.15 gi|289582881|ref|YP_003481347.1| - 0.14 12.1 1.9 0.2 11.6 0.7 1.8 2 0 0 2 2 2 0 Tar ligand binding domain homologue Baculo_PEP_C PF04513.12 gi|289582882|ref|YP_003481348.1| - 9.8e-06 25.7 14.1 0.012 15.6 1.8 3.1 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|289582882|ref|YP_003481348.1| - 3.4e-05 23.9 8.1 0.022 14.8 1.6 3.2 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|289582882|ref|YP_003481348.1| - 0.00011 20.6 7.8 0.00013 20.3 7.8 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA TolA_bind_tri PF16331.5 gi|289582882|ref|YP_003481348.1| - 0.00011 22.2 15.2 0.17 12.0 1.2 4.0 3 1 1 4 4 4 3 TolA binding protein trimerisation XhlA PF10779.9 gi|289582882|ref|YP_003481348.1| - 0.00014 21.9 18.7 0.22 11.7 1.8 5.0 4 1 0 4 4 4 1 Haemolysin XhlA Exonuc_VII_L PF02601.15 gi|289582882|ref|YP_003481348.1| - 0.00015 21.5 4.2 0.00019 21.2 4.2 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit Golgin_A5 PF09787.9 gi|289582882|ref|YP_003481348.1| - 0.00048 19.7 14.4 0.0025 17.3 5.9 2.0 1 1 1 2 2 2 1 Golgin subfamily A member 5 CENP-F_leu_zip PF10473.9 gi|289582882|ref|YP_003481348.1| - 0.00048 20.2 19.3 0.014 15.4 11.2 3.2 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|289582882|ref|YP_003481348.1| - 0.00059 18.8 19.3 0.1 11.4 0.2 2.9 1 1 2 3 3 3 2 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|289582882|ref|YP_003481348.1| - 0.00063 19.8 17.3 0.019 15.0 7.1 3.0 1 1 3 4 4 4 3 TPR/MLP1/MLP2-like protein Mod_r PF07200.13 gi|289582882|ref|YP_003481348.1| - 0.001 19.2 13.4 0.0016 18.6 10.8 2.1 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein DUF3584 PF12128.8 gi|289582882|ref|YP_003481348.1| - 0.0011 16.6 17.6 0.0013 16.4 17.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Fib_alpha PF08702.10 gi|289582882|ref|YP_003481348.1| - 0.0017 18.6 3.6 0.026 14.7 1.4 3.1 1 1 1 3 3 3 1 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.20 gi|289582882|ref|YP_003481348.1| - 0.0019 18.1 14.1 9.2 6.3 3.4 4.5 1 1 2 3 3 3 0 Prefoldin subunit DUF16 PF01519.16 gi|289582882|ref|YP_003481348.1| - 0.002 18.6 5.8 0.27 11.7 2.3 2.7 1 1 0 2 2 2 1 Protein of unknown function DUF16 FlaC_arch PF05377.11 gi|289582882|ref|YP_003481348.1| - 0.0023 18.3 10.9 1.9 9.0 0.0 4.9 2 1 3 5 5 5 1 Flagella accessory protein C (FlaC) HAUS-augmin3 PF14932.6 gi|289582882|ref|YP_003481348.1| - 0.0032 17.1 15.1 0.01 15.4 5.3 2.2 1 1 1 2 2 2 2 HAUS augmin-like complex subunit 3 Atg14 PF10186.9 gi|289582882|ref|YP_003481348.1| - 0.0059 15.7 8.3 0.078 12.1 7.8 2.1 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 ADIP PF11559.8 gi|289582882|ref|YP_003481348.1| - 0.0061 16.7 15.3 0.063 13.4 4.2 2.6 1 1 2 3 3 2 1 Afadin- and alpha -actinin-Binding DUF4404 PF14357.6 gi|289582882|ref|YP_003481348.1| - 0.0071 17.0 6.5 0.0071 17.0 6.5 4.0 2 2 2 4 4 3 1 Domain of unknown function (DUF4404) HMMR_N PF15905.5 gi|289582882|ref|YP_003481348.1| - 0.0084 15.6 11.4 0.035 13.6 11.3 1.9 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal FH2 PF02181.23 gi|289582882|ref|YP_003481348.1| - 0.011 14.8 4.7 0.64 9.1 0.1 2.9 1 1 2 3 3 3 0 Formin Homology 2 Domain FUSC PF04632.12 gi|289582882|ref|YP_003481348.1| - 0.014 14.0 13.3 0.017 13.7 13.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family HIP1_clath_bdg PF16515.5 gi|289582882|ref|YP_003481348.1| - 0.015 15.9 13.5 1.3 9.6 0.0 3.3 1 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Muted PF14942.6 gi|289582882|ref|YP_003481348.1| - 0.015 15.6 8.0 0.59 10.5 1.8 2.5 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein CLZ PF16526.5 gi|289582882|ref|YP_003481348.1| - 0.015 15.6 20.0 1.5 9.2 4.2 4.6 1 1 4 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels BLOC1_2 PF10046.9 gi|289582882|ref|YP_003481348.1| - 0.016 15.5 9.8 0.018 15.3 0.4 3.6 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CCDC106 PF15794.5 gi|289582882|ref|YP_003481348.1| - 0.02 14.6 4.6 0.018 14.8 2.9 1.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 106 NPV_P10 PF05531.12 gi|289582882|ref|YP_003481348.1| - 0.021 15.3 11.6 4.8 7.7 8.8 3.7 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein IFT57 PF10498.9 gi|289582882|ref|YP_003481348.1| - 0.023 13.7 6.2 0.017 14.1 3.6 2.1 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 GAS PF13851.6 gi|289582882|ref|YP_003481348.1| - 0.026 13.9 11.3 0.98 8.7 9.4 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding MscS_porin PF12795.7 gi|289582882|ref|YP_003481348.1| - 0.028 14.0 21.1 0.064 12.8 7.3 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain MtrB PF05440.12 gi|289582882|ref|YP_003481348.1| - 0.031 14.7 3.2 1.5 9.3 0.0 3.6 1 1 2 4 4 3 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF5082 PF16888.5 gi|289582882|ref|YP_003481348.1| - 0.037 14.3 10.3 3.6 7.9 6.8 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Snapin_Pallidin PF14712.6 gi|289582882|ref|YP_003481348.1| - 0.038 14.4 10.1 8.3 6.9 0.0 4.0 2 1 1 3 3 3 0 Snapin/Pallidin OmpH PF03938.14 gi|289582882|ref|YP_003481348.1| - 0.042 14.2 7.3 10 6.5 1.4 3.0 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) Spectrin PF00435.21 gi|289582882|ref|YP_003481348.1| - 0.046 14.2 14.7 0.49 10.9 3.4 2.7 1 1 1 2 2 2 0 Spectrin repeat DUF4407 PF14362.6 gi|289582882|ref|YP_003481348.1| - 0.049 13.0 14.2 0.23 10.8 14.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2730 PF10805.8 gi|289582882|ref|YP_003481348.1| - 0.062 13.4 15.9 0.26 11.4 1.4 4.7 1 1 2 5 5 5 0 Protein of unknown function (DUF2730) Occludin_ELL PF07303.13 gi|289582882|ref|YP_003481348.1| - 0.063 14.0 3.9 10 6.9 0.3 3.5 1 1 3 4 4 3 0 Occludin homology domain Jnk-SapK_ap_N PF09744.9 gi|289582882|ref|YP_003481348.1| - 0.063 13.5 22.5 0.23 11.7 16.8 2.6 1 1 1 3 3 3 0 JNK_SAPK-associated protein-1 DUF4200 PF13863.6 gi|289582882|ref|YP_003481348.1| - 0.067 13.6 8.9 1 9.8 6.0 2.8 2 1 0 3 3 2 0 Domain of unknown function (DUF4200) FliD_C PF07195.12 gi|289582882|ref|YP_003481348.1| - 0.068 12.6 5.2 2.5 7.4 0.4 2.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus LMP PF04778.12 gi|289582882|ref|YP_003481348.1| - 0.068 13.1 1.2 0.21 11.5 1.1 1.9 1 1 0 1 1 1 0 LMP repeated region Tmemb_cc2 PF10267.9 gi|289582882|ref|YP_003481348.1| - 0.071 12.3 13.9 0.59 9.2 8.0 2.1 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DUF724 PF05266.14 gi|289582882|ref|YP_003481348.1| - 0.071 12.9 6.1 0.09 12.6 2.6 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF724) PKcGMP_CC PF16808.5 gi|289582882|ref|YP_003481348.1| - 0.076 12.9 0.8 0.42 10.5 0.8 2.3 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase AAA_13 PF13166.6 gi|289582882|ref|YP_003481348.1| - 0.079 11.6 6.7 0.23 10.0 5.9 1.7 1 1 1 2 2 2 0 AAA domain FapA PF03961.13 gi|289582882|ref|YP_003481348.1| - 0.11 11.0 2.8 0.36 9.4 1.4 2.0 1 1 2 3 3 3 0 Flagellar Assembly Protein A Gln-synt_C PF00120.24 gi|289582882|ref|YP_003481348.1| - 0.11 11.4 1.3 0.14 11.1 1.0 1.4 1 1 0 1 1 1 0 Glutamine synthetase, catalytic domain Cortex-I_coil PF09304.10 gi|289582882|ref|YP_003481348.1| - 0.12 12.6 15.5 0.075 13.2 2.4 3.2 1 1 3 4 4 4 0 Cortexillin I, coiled coil SKA2 PF16740.5 gi|289582882|ref|YP_003481348.1| - 0.12 12.2 5.0 0.17 11.7 0.6 2.8 1 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Lectin_N PF03954.14 gi|289582882|ref|YP_003481348.1| - 0.13 12.0 8.8 3 7.6 0.9 2.9 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Laminin_II PF06009.12 gi|289582882|ref|YP_003481348.1| - 0.14 12.2 8.2 1.3 9.0 0.2 2.7 1 1 2 3 3 3 0 Laminin Domain II COG2 PF06148.11 gi|289582882|ref|YP_003481348.1| - 0.15 12.2 9.8 2.9 8.0 3.5 3.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.11 gi|289582882|ref|YP_003481348.1| - 0.15 10.0 3.8 0.24 9.3 3.8 1.3 1 1 0 1 1 1 0 Prominin FAM184 PF15665.5 gi|289582882|ref|YP_003481348.1| - 0.16 11.7 16.7 0.28 11.0 13.1 2.1 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B V_ATPase_I PF01496.19 gi|289582882|ref|YP_003481348.1| - 0.19 9.6 6.0 0.45 8.4 5.0 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Cep57_MT_bd PF06657.13 gi|289582882|ref|YP_003481348.1| - 0.19 12.2 15.0 0.84 10.1 2.3 4.3 2 1 2 4 4 4 0 Centrosome microtubule-binding domain of Cep57 YlqD PF11068.8 gi|289582882|ref|YP_003481348.1| - 0.23 11.9 4.0 0.85 10.0 2.0 2.4 1 1 1 2 2 2 0 YlqD protein Tropomyosin_1 PF12718.7 gi|289582882|ref|YP_003481348.1| - 0.24 11.5 21.7 0.26 11.4 8.6 2.9 1 1 1 2 2 2 0 Tropomyosin like ABC_tran_CTD PF16326.5 gi|289582882|ref|YP_003481348.1| - 0.24 11.6 23.8 2.6 8.4 0.6 4.6 2 1 2 4 4 4 0 ABC transporter C-terminal domain DUF2937 PF11157.8 gi|289582882|ref|YP_003481348.1| - 0.27 10.9 2.1 0.5 10.1 0.7 2.2 1 1 1 2 2 1 0 Protein of unknown function (DUF2937) Med4 PF10018.9 gi|289582882|ref|YP_003481348.1| - 0.3 10.7 12.1 0.17 11.6 4.5 2.7 1 1 1 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF2959 PF11172.8 gi|289582882|ref|YP_003481348.1| - 0.38 10.9 10.8 0.095 12.8 1.6 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) YabA PF06156.13 gi|289582882|ref|YP_003481348.1| - 0.43 11.3 8.0 1.1 9.9 0.7 3.1 1 1 3 4 4 3 0 Initiation control protein YabA SKA1 PF07160.12 gi|289582882|ref|YP_003481348.1| - 0.47 10.3 7.2 2.7 7.8 1.7 3.1 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 TMPIT PF07851.13 gi|289582882|ref|YP_003481348.1| - 0.47 9.6 2.6 2 7.6 2.5 1.9 1 1 0 1 1 1 0 TMPIT-like protein Bacillus_HBL PF05791.11 gi|289582882|ref|YP_003481348.1| - 0.48 10.2 9.2 2.3 8.0 2.3 3.0 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DASH_Spc19 PF08287.11 gi|289582882|ref|YP_003481348.1| - 0.51 10.2 13.7 0.12 12.2 8.3 2.4 1 1 1 2 2 2 0 Spc19 Nup54 PF13874.6 gi|289582882|ref|YP_003481348.1| - 0.71 10.0 12.5 9.8 6.3 1.6 3.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DLP_helical PF18709.1 gi|289582882|ref|YP_003481348.1| - 0.77 8.9 7.5 2.2 7.4 4.4 2.4 1 1 0 2 2 2 0 Dynamin-like helical domain CorA PF01544.18 gi|289582882|ref|YP_003481348.1| - 0.93 8.8 21.0 1.2 8.4 7.9 2.9 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF641 PF04859.12 gi|289582882|ref|YP_003481348.1| - 1.1 9.6 8.2 12 6.2 3.9 3.2 1 1 3 4 4 3 0 Plant protein of unknown function (DUF641) Syntaxin-6_N PF09177.11 gi|289582882|ref|YP_003481348.1| - 1.1 9.8 19.2 8.5 7.0 5.8 3.6 1 1 3 4 4 4 0 Syntaxin 6, N-terminal Fez1 PF06818.15 gi|289582882|ref|YP_003481348.1| - 1.3 9.5 13.7 3.2 8.2 10.8 2.2 1 1 1 2 2 2 0 Fez1 LPP PF04728.13 gi|289582882|ref|YP_003481348.1| - 1.5 9.2 4.8 6 7.3 0.3 3.4 4 0 0 4 4 2 0 Lipoprotein leucine-zipper APG6_N PF17675.1 gi|289582882|ref|YP_003481348.1| - 1.6 9.2 27.4 0.44 11.1 0.4 3.3 1 1 2 3 3 3 0 Apg6 coiled-coil region PilJ PF13675.6 gi|289582882|ref|YP_003481348.1| - 1.7 8.7 13.2 11 6.0 0.2 3.4 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Matrilin_ccoil PF10393.9 gi|289582882|ref|YP_003481348.1| - 1.9 8.4 4.7 4.3 7.3 0.0 3.6 3 2 1 4 4 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4140 PF13600.6 gi|289582882|ref|YP_003481348.1| - 2.2 8.8 25.0 0.72 10.3 1.2 4.3 1 1 2 3 3 2 0 N-terminal domain of unknown function (DUF4140) UPF0242 PF06785.11 gi|289582882|ref|YP_003481348.1| - 2.2 8.3 15.7 0.92 9.6 12.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Mst1_SARAH PF11629.8 gi|289582882|ref|YP_003481348.1| - 2.6 8.2 8.9 9.7 6.4 2.1 3.6 3 0 0 3 3 2 0 C terminal SARAH domain of Mst1 HSBP1 PF06825.12 gi|289582882|ref|YP_003481348.1| - 2.6 8.0 13.1 1.2 9.1 0.2 4.8 5 1 0 5 5 4 0 Heat shock factor binding protein 1 CCDC-167 PF15188.6 gi|289582882|ref|YP_003481348.1| - 3.4 8.1 20.7 2.3 8.6 3.0 3.8 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 BST2 PF16716.5 gi|289582882|ref|YP_003481348.1| - 3.9 8.1 12.0 2.8 8.6 5.3 3.2 1 1 2 3 3 2 0 Bone marrow stromal antigen 2 DASH_Dam1 PF08653.10 gi|289582882|ref|YP_003481348.1| - 4.4 7.2 5.9 21 5.0 0.1 3.6 4 0 0 4 4 3 0 DASH complex subunit Dam1 TBCC_N PF16752.5 gi|289582882|ref|YP_003481348.1| - 4.7 7.7 12.0 8.8 6.8 6.5 2.8 1 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain DUF3552 PF12072.8 gi|289582882|ref|YP_003481348.1| - 5.9 6.3 15.0 3.5 7.0 11.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Fmp27_WPPW PF10359.9 gi|289582882|ref|YP_003481348.1| - 6.3 5.5 12.5 8.8 5.1 5.5 2.6 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Helo_like_N PF17111.5 gi|289582882|ref|YP_003481348.1| - 6.6 6.0 12.3 0.96 8.8 1.6 3.0 2 2 1 3 3 3 0 Fungal N-terminal domain of STAND proteins DivIC PF04977.15 gi|289582882|ref|YP_003481348.1| - 8.4 6.2 11.8 2.1 8.2 0.2 3.4 2 1 0 2 2 2 0 Septum formation initiator TraF_2 PF13729.6 gi|289582882|ref|YP_003481348.1| - 9.4 5.5 14.5 1.5 8.1 2.5 2.8 1 1 2 3 3 3 0 F plasmid transfer operon, TraF, protein DELLA PF12041.8 gi|289582882|ref|YP_003481348.1| - 9.4 6.2 8.4 5.3 7.0 0.1 3.4 4 1 1 5 5 3 0 Transcriptional regulator DELLA protein N terminal HhH-GPD PF00730.25 gi|289582883|ref|YP_003481349.1| - 5.1e-22 78.4 0.0 7.5e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|289582883|ref|YP_003481349.1| - 4.9e-09 35.6 0.0 1.2e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|289582883|ref|YP_003481349.1| - 5.3e-07 29.8 5.2 9.7e-07 29.0 5.2 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III LPD29 PF18847.1 gi|289582883|ref|YP_003481349.1| - 0.0084 17.0 0.0 0.013 16.4 0.0 1.3 1 0 0 1 1 1 1 Large polyvalent protein associated domain 29 HHH_5 PF14520.6 gi|289582883|ref|YP_003481349.1| - 0.014 16.0 0.0 0.031 14.9 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain DinI PF06183.13 gi|289582883|ref|YP_003481349.1| - 0.098 13.0 0.0 0.3 11.4 0.0 1.8 1 0 0 1 1 1 0 DinI-like family NAD_kinase PF01513.21 gi|289582885|ref|YP_003481351.1| - 1.8e-15 56.9 1.3 2.7e-15 56.3 0.8 1.5 1 1 0 1 1 1 1 ATP-NAD kinase PQQ_2 PF13360.6 gi|289582886|ref|YP_003481352.1| - 1.3e-16 60.9 10.1 1.4e-11 44.5 3.1 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|289582886|ref|YP_003481352.1| - 2.3e-14 52.5 8.4 0.0061 16.4 0.3 6.5 7 0 0 7 7 7 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|289582886|ref|YP_003481352.1| - 6.6e-11 42.4 20.1 0.066 13.7 1.3 7.1 6 1 0 6 6 6 4 PQQ-like domain Peptidase_M28 PF04389.17 gi|289582887|ref|YP_003481353.1| - 1.4e-32 113.0 0.2 1.9e-32 112.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|289582887|ref|YP_003481353.1| - 6e-16 58.2 0.0 1.3e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|289582887|ref|YP_003481353.1| - 5.9e-05 22.2 0.3 0.00011 21.3 0.3 1.5 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|289582887|ref|YP_003481353.1| - 0.00081 19.1 2.6 0.0038 17.0 2.6 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 polyprenyl_synt PF00348.17 gi|289582888|ref|YP_003481354.1| - 4.1e-55 186.6 0.0 5.2e-55 186.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF2513 PF10711.9 gi|289582888|ref|YP_003481354.1| - 0.13 12.6 0.2 0.24 11.7 0.2 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) CBS PF00571.28 gi|289582889|ref|YP_003481355.1| - 2.8e-25 88.5 4.9 3.2e-12 46.7 0.1 2.8 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|289582889|ref|YP_003481355.1| - 5.8e-10 39.3 0.1 2.1e-09 37.5 0.1 2.0 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|289582889|ref|YP_003481355.1| - 0.0019 18.3 0.1 0.016 15.3 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease Dehyd-heme_bind PF09098.10 gi|289582889|ref|YP_003481355.1| - 0.0053 16.4 0.0 0.0081 15.8 0.0 1.3 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DHH PF01368.20 gi|289582890|ref|YP_003481356.1| - 2.1e-14 53.6 0.1 4.8e-14 52.4 0.1 1.6 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|289582890|ref|YP_003481356.1| - 1.6e-11 44.8 0.4 6.2e-11 42.9 0.2 2.1 2 0 0 2 2 2 1 DHHA1 domain TrkA_N PF02254.18 gi|289582890|ref|YP_003481356.1| - 1.7e-11 44.4 0.0 5e-11 42.9 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|289582890|ref|YP_003481356.1| - 0.016 15.5 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|289582890|ref|YP_003481356.1| - 0.087 13.4 0.0 0.25 11.9 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Proton_antipo_M PF00361.20 gi|289582891|ref|YP_003481357.1| - 8.9e-68 228.6 18.9 8.9e-68 228.6 18.9 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|289582891|ref|YP_003481357.1| - 3.1e-05 24.0 2.9 3.1e-05 24.0 2.9 2.9 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lig_chan PF00060.26 gi|289582891|ref|YP_003481357.1| - 0.093 12.6 0.1 0.093 12.6 0.1 2.2 3 0 0 3 3 3 0 Ligand-gated ion channel Oxidored_q5_N PF01059.17 gi|289582891|ref|YP_003481357.1| - 0.36 10.9 4.2 0.55 10.3 0.6 2.9 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|289582892|ref|YP_003481358.1| - 2.6e-71 240.2 27.1 6.5e-71 238.9 27.1 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|289582892|ref|YP_003481358.1| - 0.001 19.1 0.4 0.0067 16.5 0.4 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.17 gi|289582892|ref|YP_003481358.1| - 0.0011 19.0 4.0 0.0011 19.0 4.0 3.6 3 2 1 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|289582893|ref|YP_003481359.1| - 5.3e-75 252.3 22.0 1.2e-74 251.2 22.0 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|289582893|ref|YP_003481359.1| - 4.7e-15 55.4 0.1 4.7e-15 55.4 0.1 3.6 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|289582893|ref|YP_003481359.1| - 0.00013 21.6 1.7 0.00037 20.1 0.0 2.7 3 0 0 3 3 3 1 NADH dehydrogenase subunit 5 C-terminus DUF5310 PF17237.2 gi|289582893|ref|YP_003481359.1| - 0.035 14.0 0.1 0.18 11.7 0.1 2.3 1 0 0 1 1 1 0 Family of unknown function (DUF5310) Oxidored_q2 PF00420.24 gi|289582894|ref|YP_003481360.1| - 1.3e-22 79.4 9.5 1.6e-22 79.1 9.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PEP-CTERM PF07589.11 gi|289582894|ref|YP_003481360.1| - 0.091 12.9 1.1 0.091 12.9 1.1 3.4 2 1 0 2 2 2 0 PEP-CTERM motif ATP19 PF11022.8 gi|289582895|ref|YP_003481361.1| - 0.11 12.9 0.2 0.11 12.9 0.2 1.8 2 1 0 2 2 2 0 ATP synthase subunit K Oxidored_q3 PF00499.20 gi|289582896|ref|YP_003481362.1| - 3.9e-20 72.0 1.8 3.9e-20 72.0 1.8 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2530 PF10745.9 gi|289582896|ref|YP_003481362.1| - 0.42 10.9 4.3 0.56 10.5 4.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) DUF872 PF05915.12 gi|289582896|ref|YP_003481362.1| - 1.2 9.3 5.1 0.35 11.0 0.8 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Phage_holin_3_6 PF07332.11 gi|289582896|ref|YP_003481362.1| - 1.8 8.7 13.8 82 3.3 13.8 2.0 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Fer4 PF00037.27 gi|289582897|ref|YP_003481363.1| - 2e-12 46.4 9.6 1.4e-06 27.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|289582897|ref|YP_003481363.1| - 7.6e-12 45.6 9.9 1.2e-11 45.0 9.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|289582897|ref|YP_003481363.1| - 4.2e-10 40.4 3.5 3.7e-05 24.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|289582897|ref|YP_003481363.1| - 1.9e-09 37.5 8.5 2.9e-09 36.9 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|289582897|ref|YP_003481363.1| - 5.9e-09 36.0 22.1 5.6e-07 29.6 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|289582897|ref|YP_003481363.1| - 4.7e-07 29.8 19.7 9.4e-06 25.7 11.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|289582897|ref|YP_003481363.1| - 1.3e-05 25.6 12.2 0.0061 17.1 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|289582897|ref|YP_003481363.1| - 1.8e-05 24.6 13.7 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|289582897|ref|YP_003481363.1| - 1.9e-05 25.0 10.3 0.00049 20.5 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289582897|ref|YP_003481363.1| - 4.8e-05 23.2 12.0 0.0022 18.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|289582897|ref|YP_003481363.1| - 0.0002 21.6 13.6 3.7 8.3 13.6 2.2 1 1 0 1 1 1 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|289582897|ref|YP_003481363.1| - 0.00023 21.9 14.6 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|289582897|ref|YP_003481363.1| - 0.0035 17.5 9.9 0.12 12.6 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|289582897|ref|YP_003481363.1| - 0.18 11.9 8.2 0.62 10.2 8.2 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|289582897|ref|YP_003481363.1| - 0.28 11.8 12.9 2.2 8.9 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TNFR_c6 PF00020.18 gi|289582897|ref|YP_003481363.1| - 0.82 10.1 8.1 6.8 7.2 1.3 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_22 PF17179.4 gi|289582897|ref|YP_003481363.1| - 0.93 10.4 10.6 2.5 9.0 1.8 2.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|289582898|ref|YP_003481364.1| - 1.7e-93 313.2 11.9 2.1e-93 313.0 11.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|289582899|ref|YP_003481365.1| - 1.2e-86 290.2 0.1 4.3e-85 285.1 0.1 2.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|289582899|ref|YP_003481365.1| - 1.2e-34 119.6 0.2 2e-34 118.8 0.2 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TPR_12 PF13424.6 gi|289582899|ref|YP_003481365.1| - 0.15 12.4 0.0 0.44 10.9 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Oxidored_q6 PF01058.22 gi|289582900|ref|YP_003481366.1| - 1.3e-20 73.6 0.1 1.8e-20 73.1 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|289582901|ref|YP_003481367.1| - 1.6e-31 108.4 0.3 2.1e-31 108.0 0.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AIRC PF00731.20 gi|289582902|ref|YP_003481368.1| - 1.7e-47 160.7 0.0 2.2e-47 160.4 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Apolipoprotein PF01442.18 gi|289582902|ref|YP_003481368.1| - 0.03 14.2 0.2 0.06 13.2 0.0 1.6 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain ATP-grasp PF02222.22 gi|289582903|ref|YP_003481369.1| - 2.8e-47 160.5 0.1 4.8e-46 156.5 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|289582903|ref|YP_003481369.1| - 1.7e-18 66.0 0.0 4.2e-18 64.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain 2-Hacid_dh_C PF02826.19 gi|289582903|ref|YP_003481369.1| - 3.4e-06 26.5 0.0 5.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_3 PF02655.14 gi|289582903|ref|YP_003481369.1| - 4.6e-05 23.5 0.0 0.00011 22.4 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|289582903|ref|YP_003481369.1| - 0.00013 21.5 0.1 0.00093 18.8 0.0 2.2 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|289582903|ref|YP_003481369.1| - 0.00048 19.7 0.2 0.0008 19.0 0.2 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|289582903|ref|YP_003481369.1| - 0.0013 18.4 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain XdhC_C PF13478.6 gi|289582903|ref|YP_003481369.1| - 0.0067 16.9 0.0 0.017 15.6 0.0 1.7 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|289582903|ref|YP_003481369.1| - 0.017 15.0 0.1 0.035 14.0 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 gi|289582903|ref|YP_003481369.1| - 0.018 14.5 0.0 0.056 12.9 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain Pyr_redox PF00070.27 gi|289582903|ref|YP_003481369.1| - 0.022 15.3 0.2 0.13 12.8 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GARS_A PF01071.19 gi|289582903|ref|YP_003481369.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PALP PF00291.25 gi|289582903|ref|YP_003481369.1| - 0.11 11.8 1.2 0.39 10.1 0.0 2.4 3 1 0 3 3 3 0 Pyridoxal-phosphate dependent enzyme Fanconi_A PF03511.14 gi|289582903|ref|YP_003481369.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Fanconi anaemia group A protein ABC_tran PF00005.27 gi|289582904|ref|YP_003481370.1| - 5.9e-30 104.6 0.0 1.2e-29 103.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582904|ref|YP_003481370.1| - 4e-12 46.6 2.1 3.4e-07 30.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289582904|ref|YP_003481370.1| - 1.6e-05 24.4 0.3 0.00016 21.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289582904|ref|YP_003481370.1| - 0.0033 17.7 3.8 0.15 12.4 0.7 3.0 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|289582904|ref|YP_003481370.1| - 0.006 17.0 0.3 0.045 14.2 0.0 2.7 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289582904|ref|YP_003481370.1| - 0.0098 16.3 1.6 0.022 15.1 0.4 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|289582904|ref|YP_003481370.1| - 0.02 14.6 2.1 0.079 12.7 2.1 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289582904|ref|YP_003481370.1| - 0.039 13.9 0.1 0.41 10.5 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|289582904|ref|YP_003481370.1| - 0.056 13.6 0.1 2.8 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|289582904|ref|YP_003481370.1| - 0.061 13.8 0.0 0.091 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|289582904|ref|YP_003481370.1| - 0.087 12.4 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|289582904|ref|YP_003481370.1| - 0.1 12.3 0.4 0.2 11.5 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|289582904|ref|YP_003481370.1| - 0.15 12.1 2.0 8.3 6.4 0.2 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|289582904|ref|YP_003481370.1| - 0.29 11.5 1.7 1.3 9.4 1.7 2.1 1 1 0 1 1 1 0 AAA domain Trypan_PARP PF05887.11 gi|289582905|ref|YP_003481371.1| - 0.015 15.3 14.1 0.016 15.2 14.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Coilin_N PF15862.5 gi|289582905|ref|YP_003481371.1| - 0.057 13.2 11.1 0.057 13.2 11.1 1.1 1 0 0 1 1 1 0 Coilin N-terminus DUF3408 PF11888.8 gi|289582905|ref|YP_003481371.1| - 0.063 13.4 14.1 0.069 13.3 14.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) Usp PF00582.26 gi|289582905|ref|YP_003481371.1| - 0.067 13.7 5.5 0.07 13.6 5.5 1.1 1 0 0 1 1 1 0 Universal stress protein family Spt20 PF12090.8 gi|289582905|ref|YP_003481371.1| - 0.27 10.8 17.5 0.26 10.9 17.5 1.1 1 0 0 1 1 1 0 Spt20 family CobT PF06213.12 gi|289582905|ref|YP_003481371.1| - 0.3 10.4 23.3 0.3 10.4 23.3 1.0 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT Paf1 PF03985.13 gi|289582905|ref|YP_003481371.1| - 0.31 10.0 21.7 0.29 10.1 21.7 1.0 1 0 0 1 1 1 0 Paf1 AIF_C PF14721.6 gi|289582905|ref|YP_003481371.1| - 0.34 11.3 8.7 0.33 11.3 8.7 1.1 1 0 0 1 1 1 0 Apoptosis-inducing factor, mitochondrion-associated, C-term SpoIIP PF07454.11 gi|289582905|ref|YP_003481371.1| - 0.35 10.3 14.2 0.33 10.4 14.2 1.0 1 0 0 1 1 1 0 Stage II sporulation protein P (SpoIIP) RNA_pol_Rpc4 PF05132.14 gi|289582905|ref|YP_003481371.1| - 0.44 11.0 9.3 0.46 10.9 9.3 1.1 1 0 0 1 1 1 0 RNA polymerase III RPC4 Presenilin PF01080.17 gi|289582905|ref|YP_003481371.1| - 0.49 9.1 12.9 0.43 9.3 12.9 1.0 1 0 0 1 1 1 0 Presenilin DUF3438 PF11920.8 gi|289582905|ref|YP_003481371.1| - 0.53 9.5 10.2 0.61 9.3 10.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3438) RR_TM4-6 PF06459.12 gi|289582905|ref|YP_003481371.1| - 0.54 10.0 16.2 0.58 9.9 16.2 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 EIIBC-GUT_N PF03612.14 gi|289582905|ref|YP_003481371.1| - 0.57 9.9 10.7 0.61 9.8 10.7 1.1 1 0 0 1 1 1 0 Sorbitol phosphotransferase enzyme II N-terminus Afi1 PF07792.12 gi|289582905|ref|YP_003481371.1| - 0.59 10.6 12.9 0.6 10.6 12.9 1.1 1 0 0 1 1 1 0 Docking domain of Afi1 for Arf3 in vesicle trafficking Peroxin-13_N PF04088.13 gi|289582905|ref|YP_003481371.1| - 0.7 10.2 4.3 0.74 10.1 4.3 1.1 1 0 0 1 1 1 0 Peroxin 13, N-terminal region DDHD PF02862.17 gi|289582905|ref|YP_003481371.1| - 0.73 9.9 9.8 0.79 9.8 9.8 1.0 1 0 0 1 1 1 0 DDHD domain CPSF100_C PF13299.6 gi|289582905|ref|YP_003481371.1| - 0.87 9.7 12.8 0.93 9.6 12.8 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal CCDC53 PF10152.9 gi|289582905|ref|YP_003481371.1| - 0.88 10.0 12.7 0.94 9.9 12.7 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Orf78 PF06024.12 gi|289582905|ref|YP_003481371.1| - 0.93 9.8 4.2 1.1 9.6 4.2 1.2 1 0 0 1 1 1 0 Orf78 (ac78) RPN2_C PF18004.1 gi|289582905|ref|YP_003481371.1| - 1 9.2 14.5 1.1 9.1 14.5 1.1 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN2 C-terminal domain Folliculin PF11704.8 gi|289582905|ref|YP_003481371.1| - 1.1 9.2 8.2 1.1 9.1 8.2 1.1 1 0 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport FPN1 PF06963.12 gi|289582905|ref|YP_003481371.1| - 1.1 7.8 3.8 1.1 7.8 3.8 1.0 1 0 0 1 1 1 0 Ferroportin1 (FPN1) Connexin PF00029.19 gi|289582905|ref|YP_003481371.1| - 1.1 9.0 11.4 1.1 8.9 11.4 1.0 1 0 0 1 1 1 0 Connexin DUF2828 PF11443.8 gi|289582905|ref|YP_003481371.1| - 1.2 7.2 10.3 1.3 7.1 10.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) DUF5523 PF17661.1 gi|289582905|ref|YP_003481371.1| - 1.2 8.8 20.9 1.3 8.7 20.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5523) CDC45 PF02724.14 gi|289582905|ref|YP_003481371.1| - 1.3 7.2 16.5 1.2 7.3 16.5 1.0 1 0 0 1 1 1 0 CDC45-like protein DUF4834 PF16118.5 gi|289582905|ref|YP_003481371.1| - 1.4 9.9 12.7 1.6 9.7 12.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4628 PF15429.6 gi|289582905|ref|YP_003481371.1| - 1.4 8.5 12.5 1.3 8.6 12.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4628) BNIP2 PF12496.8 gi|289582905|ref|YP_003481371.1| - 1.5 9.3 12.8 1.8 9.0 12.8 1.0 1 0 0 1 1 1 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 G0-G1_switch_2 PF15103.6 gi|289582905|ref|YP_003481371.1| - 1.5 9.3 9.4 1.7 9.1 9.4 1.2 1 0 0 1 1 1 0 G0/G1 switch protein 2 CTNNB1_binding PF08347.11 gi|289582905|ref|YP_003481371.1| - 1.7 8.8 12.9 1.7 8.8 12.9 1.0 1 0 0 1 1 1 0 N-terminal CTNNB1 binding Neur_chan_memb PF02932.16 gi|289582905|ref|YP_003481371.1| - 1.9 8.5 5.8 1.9 8.5 5.8 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region eIF-3_zeta PF05091.12 gi|289582905|ref|YP_003481371.1| - 1.9 7.4 13.1 2.3 7.1 13.1 1.0 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) SLC12 PF03522.15 gi|289582905|ref|YP_003481371.1| - 2 7.3 9.3 1.9 7.4 9.3 1.0 1 0 0 1 1 1 0 Solute carrier family 12 RPA43_OB PF17875.1 gi|289582905|ref|YP_003481371.1| - 2.3 8.9 10.4 2.6 8.7 10.4 1.2 1 0 0 1 1 1 0 RPA43 OB domain in RNA Pol I CLN3 PF02487.17 gi|289582905|ref|YP_003481371.1| - 2.5 7.1 8.8 2.6 7.0 8.8 1.0 1 0 0 1 1 1 0 CLN3 protein PI3K_1B_p101 PF10486.9 gi|289582905|ref|YP_003481371.1| - 2.6 5.7 13.1 2.7 5.7 13.1 1.0 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit TERB2 PF15101.6 gi|289582905|ref|YP_003481371.1| - 2.6 8.1 15.6 2.7 8.0 15.6 1.1 1 0 0 1 1 1 0 Telomere-associated protein TERB2 Pinin_SDK_memA PF04696.13 gi|289582905|ref|YP_003481371.1| - 2.6 8.1 26.6 3.3 7.8 26.6 1.1 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region NOA36 PF06524.12 gi|289582905|ref|YP_003481371.1| - 2.9 7.2 13.8 2.9 7.1 13.8 1.0 1 0 0 1 1 1 0 NOA36 protein DUF4820 PF16091.5 gi|289582905|ref|YP_003481371.1| - 2.9 7.2 12.2 3.1 7.1 12.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4820) MDM31_MDM32 PF08118.11 gi|289582905|ref|YP_003481371.1| - 2.9 6.5 10.8 3.1 6.4 10.8 1.0 1 0 0 1 1 1 0 Yeast mitochondrial distribution and morphology (MDM) proteins V_ATPase_I PF01496.19 gi|289582905|ref|YP_003481371.1| - 2.9 5.7 13.0 2.9 5.7 13.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FAM91_C PF14648.6 gi|289582905|ref|YP_003481371.1| - 2.9 6.6 7.3 3 6.6 7.3 1.0 1 0 0 1 1 1 0 FAM91 C-terminus Atrophin-1 PF03154.15 gi|289582905|ref|YP_003481371.1| - 3.2 5.9 22.5 4.6 5.4 22.5 1.3 1 0 0 1 1 1 0 Atrophin-1 family Plasmodium_Vir PF05795.11 gi|289582905|ref|YP_003481371.1| - 3.4 7.0 8.7 3 7.2 8.7 1.0 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Ctr PF04145.15 gi|289582905|ref|YP_003481371.1| - 3.4 8.3 5.0 3.8 8.1 5.0 1.1 1 0 0 1 1 1 0 Ctr copper transporter family Tim54 PF11711.8 gi|289582905|ref|YP_003481371.1| - 3.4 6.4 15.7 3.6 6.3 15.7 1.0 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 DUF4637 PF15470.6 gi|289582905|ref|YP_003481371.1| - 3.6 7.3 19.8 4.2 7.1 19.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) Peptidase_U57 PF05582.12 gi|289582905|ref|YP_003481371.1| - 3.7 6.7 8.4 3.7 6.7 8.4 1.0 1 0 0 1 1 1 0 YabG peptidase U57 DUF4471 PF14740.6 gi|289582905|ref|YP_003481371.1| - 3.7 6.7 13.0 3.9 6.6 13.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) FAM176 PF14851.6 gi|289582905|ref|YP_003481371.1| - 3.7 7.2 15.2 5 6.8 15.2 1.3 1 0 0 1 1 1 0 FAM176 family ALMT PF11744.8 gi|289582905|ref|YP_003481371.1| - 4 6.2 9.5 4.4 6.0 9.5 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4770 PF15994.5 gi|289582905|ref|YP_003481371.1| - 4.1 7.6 10.5 4.6 7.4 10.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4770) ORC_WH_C PF18137.1 gi|289582905|ref|YP_003481371.1| - 4.1 7.5 16.3 4.6 7.3 16.3 1.1 1 0 0 1 1 1 0 Origin recognition complex winged helix C-terminal Folate_carrier PF01770.18 gi|289582905|ref|YP_003481371.1| - 4.2 6.0 6.9 3.9 6.1 6.9 1.0 1 0 0 1 1 1 0 Reduced folate carrier DUF2457 PF10446.9 gi|289582905|ref|YP_003481371.1| - 4.2 6.4 21.1 4.2 6.4 21.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Eapp_C PF10238.9 gi|289582905|ref|YP_003481371.1| - 4.3 7.4 14.5 5.3 7.1 14.5 1.1 1 0 0 1 1 1 0 E2F-associated phosphoprotein FAM60A PF15396.6 gi|289582905|ref|YP_003481371.1| - 4.3 7.3 8.5 4.2 7.3 8.5 1.1 1 0 0 1 1 1 0 Protein Family FAM60A Hid1 PF12722.7 gi|289582905|ref|YP_003481371.1| - 4.4 5.3 11.9 4.6 5.2 11.9 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Spore_coat_CotO PF14153.6 gi|289582905|ref|YP_003481371.1| - 4.7 7.1 21.4 5.4 6.9 21.4 1.2 1 0 0 1 1 1 0 Spore coat protein CotO EOS1 PF12326.8 gi|289582905|ref|YP_003481371.1| - 5 7.0 5.2 5.1 7.0 5.2 1.1 1 0 0 1 1 1 0 N-glycosylation protein RabGAP-TBC PF00566.18 gi|289582905|ref|YP_003481371.1| - 5.2 6.7 7.9 5.6 6.6 7.9 1.2 1 0 0 1 1 1 0 Rab-GTPase-TBC domain GNAT_acetyltr_2 PF13718.6 gi|289582905|ref|YP_003481371.1| - 5.2 6.4 10.3 5.7 6.3 10.3 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF1682 PF07946.14 gi|289582905|ref|YP_003481371.1| - 5.9 6.0 19.8 6.2 5.9 19.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) DUF913 PF06025.12 gi|289582905|ref|YP_003481371.1| - 6.2 5.7 10.7 6.3 5.7 10.7 1.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) RP-C_C PF11800.8 gi|289582905|ref|YP_003481371.1| - 6.3 6.8 13.6 6.3 6.8 13.6 1.0 1 0 0 1 1 1 0 Replication protein C C-terminal region Androgen_recep PF02166.16 gi|289582905|ref|YP_003481371.1| - 6.8 5.4 10.0 7.7 5.2 10.0 1.2 1 0 0 1 1 1 0 Androgen receptor Auts2 PF15336.6 gi|289582905|ref|YP_003481371.1| - 7.4 6.6 14.0 9.1 6.3 14.0 1.1 1 0 0 1 1 1 0 Autism susceptibility gene 2 protein TFB6 PF17110.5 gi|289582905|ref|YP_003481371.1| - 7.5 6.3 15.5 8.7 6.1 15.5 1.1 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH TRAP_alpha PF03896.16 gi|289582905|ref|YP_003481371.1| - 8.2 5.5 13.9 8.5 5.5 13.9 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Merozoite_SPAM PF07133.11 gi|289582905|ref|YP_003481371.1| - 8.7 6.3 31.5 10 6.1 31.5 1.1 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) CSG2 PF16965.5 gi|289582905|ref|YP_003481371.1| - 9.1 5.1 7.2 9.2 5.1 7.2 1.0 1 0 0 1 1 1 0 Ceramide synthase regulator PPL5 PF18168.1 gi|289582905|ref|YP_003481371.1| - 9.2 5.5 9.6 9.7 5.4 9.6 1.1 1 0 0 1 1 1 0 Prim-pol family 5 ABC2_membrane_4 PF12730.7 gi|289582906|ref|YP_003481372.1| - 0.0052 16.8 7.8 0.011 15.7 7.8 1.6 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289582906|ref|YP_003481372.1| - 0.045 12.9 16.5 0.0047 16.1 11.9 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|289582906|ref|YP_003481372.1| - 2.9 7.1 21.1 28 3.9 21.1 2.4 1 1 0 1 1 1 0 ABC-2 family transporter protein GTP_EFTU PF00009.27 gi|289582907|ref|YP_003481373.1| - 5.3e-57 192.5 0.2 6.4e-57 192.2 0.2 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|289582907|ref|YP_003481373.1| - 2.5e-35 121.1 0.0 8e-35 119.5 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|289582907|ref|YP_003481373.1| - 1.7e-16 60.3 2.5 6.6e-16 58.5 0.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|289582907|ref|YP_003481373.1| - 4.5e-08 33.2 0.1 2.9e-07 30.5 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|289582907|ref|YP_003481373.1| - 0.00018 21.5 2.1 0.19 11.6 0.2 2.4 1 1 1 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|289582907|ref|YP_003481373.1| - 0.0022 18.1 0.0 0.88 9.6 0.0 2.4 1 1 1 2 2 2 2 Dynamin family FeoB_N PF02421.18 gi|289582907|ref|YP_003481373.1| - 0.0041 16.7 0.2 0.17 11.4 0.5 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 gi|289582907|ref|YP_003481373.1| - 0.0081 16.0 0.5 0.024 14.5 0.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|289582907|ref|YP_003481373.1| - 0.012 15.1 0.0 0.46 9.9 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|289582907|ref|YP_003481373.1| - 0.014 14.6 0.0 0.032 13.5 0.0 1.5 1 1 0 1 1 1 0 Septin Ras PF00071.22 gi|289582907|ref|YP_003481373.1| - 0.03 13.9 1.4 0.13 11.8 0.5 2.2 2 1 0 2 2 2 0 Ras family Gtr1_RagA PF04670.12 gi|289582907|ref|YP_003481373.1| - 0.031 13.6 0.1 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Roc PF08477.13 gi|289582907|ref|YP_003481373.1| - 0.049 13.8 0.0 12 6.1 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DMRL_synthase PF00885.19 gi|289582908|ref|YP_003481374.1| - 2.4e-31 108.4 1.0 3.1e-31 108.1 1.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|289582909|ref|YP_003481375.1| - 8.9e-63 212.6 0.0 1e-62 212.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|289582909|ref|YP_003481375.1| - 5.2e-05 21.9 0.3 8.7e-05 21.2 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|289582909|ref|YP_003481375.1| - 0.0014 17.6 0.0 0.0047 15.9 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|289582909|ref|YP_003481375.1| - 0.0045 16.3 0.1 0.0073 15.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|289582909|ref|YP_003481375.1| - 0.014 14.7 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase PknG_rubred PF16919.5 gi|289582910|ref|YP_003481376.1| - 0.00069 19.8 1.9 0.00069 19.8 1.9 2.0 1 1 0 2 2 2 1 Protein kinase G rubredoxin domain FYVE PF01363.21 gi|289582910|ref|YP_003481376.1| - 0.0012 18.9 12.2 0.16 12.2 1.4 3.3 2 2 1 3 3 3 2 FYVE zinc finger DZR PF12773.7 gi|289582910|ref|YP_003481376.1| - 0.0013 18.7 15.4 0.053 13.6 6.3 2.7 1 1 1 2 2 2 2 Double zinc ribbon FYVE_2 PF02318.16 gi|289582910|ref|YP_003481376.1| - 0.002 18.3 1.1 0.002 18.3 1.1 1.5 1 1 0 1 1 1 1 FYVE-type zinc finger zf-C2H2_6 PF13912.6 gi|289582910|ref|YP_003481376.1| - 0.014 15.4 0.4 0.014 15.4 0.4 2.8 4 0 0 4 4 2 0 C2H2-type zinc finger C1_1 PF00130.22 gi|289582910|ref|YP_003481376.1| - 0.022 14.7 8.9 0.44 10.5 0.5 3.0 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-CHY PF05495.12 gi|289582910|ref|YP_003481376.1| - 0.093 13.2 11.9 1.1 9.8 0.6 2.1 2 0 0 2 2 2 0 CHY zinc finger zf-C2H2_4 PF13894.6 gi|289582910|ref|YP_003481376.1| - 0.14 13.1 0.8 0.14 13.1 0.8 4.6 5 0 0 5 5 5 0 C2H2-type zinc finger zf-HYPF PF07503.12 gi|289582910|ref|YP_003481376.1| - 0.43 10.4 18.5 1.5 8.7 4.0 4.0 3 1 1 4 4 4 0 HypF finger TackOD1 PF18551.1 gi|289582910|ref|YP_003481376.1| - 1.5 8.5 11.6 0.37 10.4 3.1 2.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 NOB1_Zn_bind PF08772.11 gi|289582910|ref|YP_003481376.1| - 2.3 8.5 13.9 8.4 6.6 1.7 3.1 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_15 PF17032.5 gi|289582910|ref|YP_003481376.1| - 2.4 9.0 14.8 1.7 9.4 5.3 2.5 1 1 1 2 2 2 0 zinc-ribbon family OrfB_Zn_ribbon PF07282.11 gi|289582910|ref|YP_003481376.1| - 2.7 8.0 15.8 1.1 9.3 1.0 3.3 1 1 3 4 4 4 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|289582910|ref|YP_003481376.1| - 3.4 7.7 13.7 8.2 6.5 0.9 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ephrin_rec_like PF07699.13 gi|289582910|ref|YP_003481376.1| - 3.4 7.5 20.5 0.073 12.8 4.5 3.0 2 1 1 3 3 3 0 Putative ephrin-receptor like A2L_zn_ribbon PF08792.10 gi|289582910|ref|YP_003481376.1| - 4.6 7.1 13.6 3.5 7.5 0.6 3.8 4 0 0 4 4 4 0 A2L zinc ribbon domain FYDLN_acid PF09538.10 gi|289582910|ref|YP_003481376.1| - 9.2 7.0 15.7 2.3 8.9 2.6 3.0 2 1 1 3 3 3 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS91 PF14319.6 gi|289582910|ref|YP_003481376.1| - 9.7 6.3 13.8 0.44 10.6 0.7 3.1 1 1 2 3 3 3 0 Transposase zinc-binding domain IMPDH PF00478.25 gi|289582912|ref|YP_003481378.1| - 5.8e-120 400.4 5.1 7.1e-120 400.1 5.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|289582912|ref|YP_003481378.1| - 6.6e-08 32.0 8.5 1.6e-07 30.7 8.5 1.7 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|289582912|ref|YP_003481378.1| - 1.3e-07 31.3 12.5 0.00031 20.2 8.1 2.3 1 1 0 2 2 2 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|289582912|ref|YP_003481378.1| - 4.8e-06 26.2 1.2 0.00022 20.8 0.1 2.3 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|289582912|ref|YP_003481378.1| - 0.0017 17.6 4.1 0.0017 17.6 4.1 1.8 2 1 0 2 2 2 1 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|289582912|ref|YP_003481378.1| - 0.0067 15.8 4.8 0.012 15.0 4.2 1.7 1 1 1 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|289582912|ref|YP_003481378.1| - 0.011 15.0 0.6 0.011 15.0 0.6 1.8 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Aldolase PF01081.19 gi|289582912|ref|YP_003481378.1| - 0.096 12.1 5.5 0.12 11.7 1.0 2.6 1 1 1 3 3 3 0 KDPG and KHG aldolase DUF1129 PF06570.11 gi|289582913|ref|YP_003481379.1| - 2.1 7.8 6.8 1 8.8 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF373 PF04123.13 gi|289582913|ref|YP_003481379.1| - 2.2 7.7 10.4 6.7 6.0 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Phosphodiest PF01663.22 gi|289582914|ref|YP_003481380.1| - 4.9e-34 118.5 0.0 1.1e-32 114.1 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|289582914|ref|YP_003481380.1| - 0.004 16.6 0.5 4.3 6.6 0.1 3.8 2 2 1 3 3 3 1 Sulfatase Metalloenzyme PF01676.18 gi|289582914|ref|YP_003481380.1| - 0.0044 16.4 0.1 0.013 14.9 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily PglZ PF08665.12 gi|289582914|ref|YP_003481380.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.2 1 0 0 1 1 1 0 PglZ domain HTH_10 PF04967.12 gi|289582915|ref|YP_003481381.1| - 1.3e-17 63.3 0.1 2.1e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289582915|ref|YP_003481381.1| - 1.3e-09 38.1 3.6 2.2e-09 37.3 3.6 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|289582915|ref|YP_003481381.1| - 4.2e-08 32.6 0.1 1.1e-07 31.2 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|289582915|ref|YP_003481381.1| - 1.4e-05 24.6 0.1 0.0015 18.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|289582915|ref|YP_003481381.1| - 5.2e-05 23.1 0.0 0.00014 21.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289582915|ref|YP_003481381.1| - 0.00027 20.4 0.0 0.00051 19.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PCRF PF03462.18 gi|289582915|ref|YP_003481381.1| - 0.0096 15.8 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 PCRF domain HTH_3 PF01381.22 gi|289582915|ref|YP_003481381.1| - 0.027 14.5 0.0 0.061 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|289582915|ref|YP_003481381.1| - 0.063 13.1 0.2 0.21 11.5 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|289582915|ref|YP_003481381.1| - 0.063 13.2 0.0 0.19 11.6 0.0 1.8 1 1 0 1 1 1 0 MarR family P22_Cro PF14549.6 gi|289582915|ref|YP_003481381.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_11 PF08279.12 gi|289582915|ref|YP_003481381.1| - 0.077 13.0 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|289582915|ref|YP_003481381.1| - 0.086 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|289582915|ref|YP_003481381.1| - 0.17 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_5 PF01022.20 gi|289582915|ref|YP_003481381.1| - 0.2 11.5 0.0 0.47 10.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Polysacc_deac_1 PF01522.21 gi|289582917|ref|YP_003481383.1| - 9.9e-10 38.4 0.3 1.7e-08 34.4 0.1 2.6 2 2 0 2 2 2 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|289582917|ref|YP_003481383.1| - 0.074 12.7 0.0 0.51 10.0 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) DUF3775 PF12616.8 gi|289582917|ref|YP_003481383.1| - 0.085 12.9 0.2 0.22 11.6 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) HTH_39 PF14090.6 gi|289582917|ref|YP_003481383.1| - 0.11 12.2 0.0 27 4.6 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Polysacc_synt_C PF14667.6 gi|289582918|ref|YP_003481384.1| - 2.7e-17 63.2 13.3 2.7e-17 63.2 13.3 4.7 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|289582918|ref|YP_003481384.1| - 2.7e-13 49.9 23.0 2.7e-13 49.9 23.0 2.4 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|289582918|ref|YP_003481384.1| - 1e-10 41.4 18.2 2.7e-10 39.9 18.2 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|289582918|ref|YP_003481384.1| - 4e-08 32.3 13.8 4e-08 32.3 13.8 2.3 1 1 1 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|289582918|ref|YP_003481384.1| - 7.9e-08 32.1 5.4 7.9e-08 32.1 5.4 3.6 3 0 0 3 3 3 1 MatE Glycos_transf_2 PF00535.26 gi|289582919|ref|YP_003481385.1| - 1.8e-17 63.7 0.1 1e-07 31.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289582919|ref|YP_003481385.1| - 0.002 18.0 0.3 0.0064 16.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|289582919|ref|YP_003481385.1| - 0.0068 16.9 0.2 0.012 16.1 0.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF4282 PF14110.6 gi|289582919|ref|YP_003481385.1| - 0.97 10.2 6.2 1.8 9.4 6.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) UCR_Fe-S_N PF10399.9 gi|289582920|ref|YP_003481386.1| - 0.013 14.9 0.9 0.024 14.0 0.9 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|289582920|ref|YP_003481386.1| - 0.12 12.3 1.9 0.24 11.3 1.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.26 gi|289582921|ref|YP_003481387.1| - 5.8e-36 123.9 0.2 8.7e-36 123.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|289582921|ref|YP_003481387.1| - 6.3e-20 72.0 0.2 9e-20 71.5 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|289582921|ref|YP_003481387.1| - 3.6e-15 56.2 0.0 2.1e-14 53.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|289582921|ref|YP_003481387.1| - 6.4e-05 23.4 0.1 0.00012 22.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 ATPgrasp_ST PF14397.6 gi|289582922|ref|YP_003481388.1| - 2.1e-26 92.9 0.0 5.5e-26 91.5 0.0 1.5 1 1 0 1 1 1 1 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|289582922|ref|YP_003481388.1| - 0.021 14.4 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|289582922|ref|YP_003481388.1| - 0.079 12.2 0.0 9.2 5.4 0.0 2.2 2 0 0 2 2 2 0 YheC/D like ATP-grasp GSH_synth_ATP PF03917.17 gi|289582922|ref|YP_003481388.1| - 0.22 10.2 0.0 0.33 9.7 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain AstE_AspA PF04952.14 gi|289582923|ref|YP_003481389.1| - 8.6e-12 44.7 0.0 1.6e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PKD PF00801.20 gi|289582923|ref|YP_003481389.1| - 3.7e-10 39.5 0.2 8.5e-10 38.3 0.2 1.6 1 0 0 1 1 1 1 PKD domain Peptidase_M14 PF00246.24 gi|289582923|ref|YP_003481389.1| - 0.01 15.7 0.2 0.47 10.2 0.1 2.3 2 0 0 2 2 2 0 Zinc carboxypeptidase Peptidase_M99 PF17033.5 gi|289582923|ref|YP_003481389.1| - 0.01 15.3 0.0 0.068 12.6 0.0 1.9 1 1 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic REJ PF02010.15 gi|289582923|ref|YP_003481389.1| - 0.091 11.5 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 REJ domain Polysacc_deac_1 PF01522.21 gi|289582924|ref|YP_003481390.1| - 2.7e-06 27.3 0.2 4.6e-06 26.5 0.2 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|289582924|ref|YP_003481390.1| - 0.00079 19.1 0.3 0.0013 18.5 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) TAT_signal PF10518.9 gi|289582924|ref|YP_003481390.1| - 0.1 12.5 5.4 0.16 11.9 5.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Asn_synthase PF00733.21 gi|289582925|ref|YP_003481391.1| - 1.7e-06 28.0 0.0 8.5e-06 25.7 0.0 2.0 2 0 0 2 2 2 1 Asparagine synthase DUF4777 PF16007.5 gi|289582926|ref|YP_003481392.1| - 0.074 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) DUF1616 PF07760.11 gi|289582928|ref|YP_003481394.1| - 4.1e-82 275.9 0.5 4.7e-82 275.7 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4232 PF14016.6 gi|289582928|ref|YP_003481394.1| - 0.23 11.6 1.3 0.35 11.0 0.5 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4232) PMT_2 PF13231.6 gi|289582930|ref|YP_003481396.1| - 0.0001 22.5 20.2 0.0001 22.5 20.2 4.6 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.20 gi|289582931|ref|YP_003481397.1| - 5e-13 49.0 0.0 7.6e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289582931|ref|YP_003481397.1| - 1.2e-10 42.1 3.1 2.6e-10 41.0 3.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|289582931|ref|YP_003481397.1| - 6e-10 39.7 0.1 1.2e-09 38.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|289582931|ref|YP_003481397.1| - 2.1e-09 37.6 0.4 7e-09 35.9 0.1 2.0 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|289582931|ref|YP_003481397.1| - 0.00023 21.2 0.0 0.0033 17.4 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|289582931|ref|YP_003481397.1| - 0.21 12.0 0.1 0.78 10.2 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 DUF354 PF04007.12 gi|289582932|ref|YP_003481398.1| - 1.8e-16 60.2 0.0 2.1e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|289582932|ref|YP_003481398.1| - 1e-05 25.6 0.5 2.1e-05 24.6 0.5 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 B12-binding PF02310.19 gi|289582932|ref|YP_003481398.1| - 0.00028 20.9 3.4 0.038 14.0 0.3 2.6 2 1 0 2 2 2 2 B12 binding domain Glyco_trans_4_4 PF13579.6 gi|289582932|ref|YP_003481398.1| - 0.0015 19.0 1.2 0.0015 19.0 1.2 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|289582932|ref|YP_003481398.1| - 0.0019 18.2 0.1 0.0033 17.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_tran_28_C PF04101.16 gi|289582932|ref|YP_003481398.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|289582934|ref|YP_003481400.1| - 1.6e-37 128.9 0.9 3.7e-36 124.4 0.4 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|289582934|ref|YP_003481400.1| - 1.9e-23 82.4 0.0 3.5e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|289582934|ref|YP_003481400.1| - 6.5e-19 68.3 0.1 4.4e-18 65.6 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|289582934|ref|YP_003481400.1| - 2.5e-07 31.0 0.0 8.4e-07 29.3 0.0 1.9 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|289582934|ref|YP_003481400.1| - 3.8e-05 23.7 0.0 0.00079 19.4 0.0 2.7 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|289582934|ref|YP_003481400.1| - 0.00042 20.8 0.0 0.0051 17.4 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|289582934|ref|YP_003481400.1| - 0.00044 19.7 0.0 0.0045 16.4 0.0 2.4 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|289582934|ref|YP_003481400.1| - 0.00067 19.6 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289582934|ref|YP_003481400.1| - 0.0051 17.1 4.4 0.14 12.4 0.2 3.0 3 1 0 3 3 3 1 TrkA-N domain ApbA PF02558.16 gi|289582934|ref|YP_003481400.1| - 0.043 13.5 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HTH_IclR PF09339.10 gi|289582935|ref|YP_003481401.1| - 1.6e-05 24.6 0.0 7.5e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|289582935|ref|YP_003481401.1| - 2.6e-05 24.0 0.0 5e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289582935|ref|YP_003481401.1| - 3.4e-05 23.7 0.0 6.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|289582935|ref|YP_003481401.1| - 0.00015 21.3 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|289582935|ref|YP_003481401.1| - 0.0024 17.8 0.0 0.004 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|289582935|ref|YP_003481401.1| - 0.0031 17.4 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|289582935|ref|YP_003481401.1| - 0.0096 15.7 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|289582935|ref|YP_003481401.1| - 0.015 15.2 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BAT PF15915.5 gi|289582935|ref|YP_003481401.1| - 0.016 15.1 0.2 0.79 9.6 0.0 2.1 2 0 0 2 2 2 0 GAF and HTH_10 associated domain HTH_31 PF13560.6 gi|289582935|ref|YP_003481401.1| - 0.034 14.5 0.1 0.15 12.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|289582935|ref|YP_003481401.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_46 PF15977.5 gi|289582935|ref|YP_003481401.1| - 0.19 11.8 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Serglycin PF04360.12 gi|289582935|ref|YP_003481401.1| - 0.47 10.4 2.2 0.97 9.4 2.2 1.5 1 0 0 1 1 1 0 Serglycin SIS PF01380.22 gi|289582936|ref|YP_003481402.1| - 3.5e-47 159.5 0.6 8.8e-27 93.5 0.4 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|289582936|ref|YP_003481402.1| - 3.1e-22 79.2 0.8 5.8e-22 78.3 0.1 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|289582936|ref|YP_003481402.1| - 1.3e-18 67.1 0.0 2.2e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GRDA PF04723.14 gi|289582936|ref|YP_003481402.1| - 0.015 15.0 0.0 0.055 13.3 0.0 1.9 2 0 0 2 2 2 0 Glycine reductase complex selenoprotein A GATase_4 PF13230.6 gi|289582936|ref|YP_003481402.1| - 0.031 13.2 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II DUF4350 PF14258.6 gi|289582936|ref|YP_003481402.1| - 0.036 14.5 1.1 0.13 12.7 1.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) EccE PF11203.8 gi|289582936|ref|YP_003481402.1| - 4 7.8 7.4 23 5.4 1.1 2.9 1 1 2 3 3 3 0 Putative type VII ESX secretion system translocon, EccE Halogen_Hydrol PF10112.9 gi|289582937|ref|YP_003481403.1| - 0.17 11.9 0.0 0.21 11.6 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein CarboxypepD_reg PF13620.6 gi|289582938|ref|YP_003481404.1| - 1.8e-21 76.2 3.6 1.5e-10 41.2 0.5 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|289582938|ref|YP_003481404.1| - 1.4e-13 50.6 0.5 1e-06 28.6 0.1 2.4 2 0 0 2 2 2 2 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|289582938|ref|YP_003481404.1| - 2.4e-08 33.8 5.7 0.00011 22.1 1.6 3.1 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 1) PEGA PF08308.11 gi|289582938|ref|YP_003481404.1| - 6.8e-08 32.3 0.9 0.0034 17.2 0.0 2.4 2 0 0 2 2 2 2 PEGA domain Invasin_D3 PF09134.10 gi|289582938|ref|YP_003481404.1| - 1.3e-07 31.8 9.6 2.1e-05 24.8 2.9 2.6 2 0 0 2 2 2 2 Invasin, domain 3 phage_tail_N PF08400.10 gi|289582938|ref|YP_003481404.1| - 2.5e-05 24.3 6.6 0.011 15.8 0.2 2.6 1 1 1 2 2 2 2 Prophage tail fibre N-terminal fn3_3 PF14686.6 gi|289582938|ref|YP_003481404.1| - 0.0031 17.3 0.2 0.16 11.8 0.1 2.4 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF1533 PF07550.11 gi|289582938|ref|YP_003481404.1| - 0.0038 17.1 0.1 2.6 8.0 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF1533) MG4 PF17789.1 gi|289582938|ref|YP_003481404.1| - 0.0058 16.8 0.1 0.22 11.7 0.0 2.5 2 1 0 2 2 2 1 Macroglobulin domain MG4 DUF1939 PF09154.10 gi|289582938|ref|YP_003481404.1| - 0.022 14.9 0.0 10 6.3 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1939) Big_3_5 PF16640.5 gi|289582938|ref|YP_003481404.1| - 0.025 14.8 4.3 0.27 11.5 0.3 2.7 3 0 0 3 3 2 0 Bacterial Ig-like domain (group 3) DUF4198 PF10670.9 gi|289582938|ref|YP_003481404.1| - 0.055 13.8 2.7 2.7 8.3 0.2 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4198) DUF3040 PF11239.8 gi|289582938|ref|YP_003481404.1| - 0.075 13.3 0.8 0.11 12.8 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Myco_19_kDa PF05481.12 gi|289582938|ref|YP_003481404.1| - 0.078 13.3 12.6 0.05 13.9 1.8 2.9 2 1 1 3 3 3 0 Mycobacterium 19 kDa lipoprotein antigen DUF3859 PF12975.7 gi|289582938|ref|YP_003481404.1| - 0.13 12.2 3.3 4.5 7.3 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3859) DUF3869 PF12985.7 gi|289582938|ref|YP_003481404.1| - 0.14 12.6 8.9 0.27 11.7 0.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3869) TTR-52 PF01060.23 gi|289582938|ref|YP_003481404.1| - 0.29 11.9 2.9 12 6.7 0.1 2.8 2 1 0 2 2 2 0 Transthyretin-like family Carbam_trans_C PF16861.5 gi|289582939|ref|YP_003481405.1| - 8.2e-66 220.8 0.0 1.3e-65 220.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|289582939|ref|YP_003481405.1| - 5.6e-60 203.8 0.0 7.6e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus Sua5_yciO_yrdC PF01300.18 gi|289582939|ref|YP_003481405.1| - 0.078 12.5 0.0 0.18 11.3 0.0 1.7 1 1 0 1 1 1 0 Telomere recombination Polysacc_deac_1 PF01522.21 gi|289582940|ref|YP_003481406.1| - 0.00055 19.8 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Big_6 PF17936.1 gi|289582940|ref|YP_003481406.1| - 0.022 15.0 0.1 0.15 12.4 0.1 2.4 2 1 1 3 3 3 0 Bacterial Ig domain tRNA-synt_1 PF00133.22 gi|289582941|ref|YP_003481407.1| - 2.5e-56 191.2 0.6 4.8e-20 71.4 0.1 5.0 3 2 1 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|289582941|ref|YP_003481407.1| - 5.8e-50 169.4 0.0 1e-49 168.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|289582941|ref|YP_003481407.1| - 8.3e-32 110.4 0.0 5.9e-24 84.5 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|289582941|ref|YP_003481407.1| - 4.5e-11 42.9 0.0 7.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|289582941|ref|YP_003481407.1| - 0.00072 18.6 0.0 0.24 10.3 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|289582941|ref|YP_003481407.1| - 0.0039 16.6 0.0 2.1 7.6 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain IBR PF01485.21 gi|289582941|ref|YP_003481407.1| - 0.019 15.2 0.4 0.69 10.2 0.0 2.8 2 1 1 3 3 3 0 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|289582941|ref|YP_003481407.1| - 0.083 12.3 8.0 21 4.7 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.7 gi|289582941|ref|YP_003481407.1| - 0.16 12.0 7.5 2.8 8.1 0.2 3.0 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|289582941|ref|YP_003481407.1| - 0.19 11.8 7.4 0.29 11.2 0.0 3.7 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|289582941|ref|YP_003481407.1| - 0.26 10.8 8.8 14 5.3 0.4 4.4 4 0 0 4 4 4 0 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|289582941|ref|YP_003481407.1| - 0.38 11.5 1.0 34 5.3 0.0 2.7 2 1 0 2 2 2 0 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|289582941|ref|YP_003481407.1| - 4.6 7.4 13.3 7.2 6.8 6.6 3.8 3 1 0 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|289582941|ref|YP_003481407.1| - 5.6 7.4 5.7 15 6.1 0.4 3.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 HscB_4_cys PF18256.1 gi|289582941|ref|YP_003481407.1| - 5.8 6.8 7.4 0.87 9.4 0.6 3.0 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif Nudix_N_2 PF14803.6 gi|289582941|ref|YP_003481407.1| - 6.1 6.8 10.4 28 4.7 0.2 4.2 4 0 0 4 4 4 0 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|289582941|ref|YP_003481407.1| - 8.3 6.7 6.4 86 3.4 0.1 3.8 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF420 PF04238.12 gi|289582942|ref|YP_003481408.1| - 2.9e-36 124.7 13.2 2.9e-36 124.7 13.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF3413 PF11893.8 gi|289582942|ref|YP_003481408.1| - 0.0031 16.7 11.2 0.027 13.6 2.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3413) DUF2306 PF10067.9 gi|289582942|ref|YP_003481408.1| - 0.0048 17.1 6.6 0.065 13.4 0.2 2.2 2 0 0 2 2 2 2 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.16 gi|289582942|ref|YP_003481408.1| - 0.0065 16.6 1.7 0.0065 16.6 1.7 2.4 2 1 0 2 2 2 1 Eukaryotic cytochrome b561 Myelin_PLP PF01275.19 gi|289582942|ref|YP_003481408.1| - 0.23 11.3 4.1 0.28 11.0 3.2 1.8 1 1 0 1 1 1 0 Myelin proteolipid protein (PLP or lipophilin) UPF0182 PF03699.13 gi|289582942|ref|YP_003481408.1| - 1 7.4 9.8 1.2 7.1 9.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF2231 PF09990.9 gi|289582942|ref|YP_003481408.1| - 2.7 8.5 11.3 0.18 12.2 2.8 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2231) DUF1240 PF06836.12 gi|289582942|ref|YP_003481408.1| - 6.4 7.4 8.5 0.32 11.6 1.6 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1240) PAS_4 PF08448.10 gi|289582943|ref|YP_003481409.1| - 2.2e-30 105.1 4.7 1.8e-14 53.9 0.1 3.2 3 0 0 3 3 2 2 PAS fold HATPase_c PF02518.26 gi|289582943|ref|YP_003481409.1| - 3.2e-27 95.3 0.0 9.6e-27 93.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|289582943|ref|YP_003481409.1| - 3.8e-18 65.6 0.0 3.9e-09 36.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|289582943|ref|YP_003481409.1| - 3.9e-18 65.5 0.1 4.3e-08 33.1 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|289582943|ref|YP_003481409.1| - 1e-12 47.8 1.4 3.4e-05 23.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|289582943|ref|YP_003481409.1| - 1.3e-12 47.5 2.0 2.2e-12 46.9 0.2 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|289582943|ref|YP_003481409.1| - 8.5e-10 38.8 0.0 0.0019 18.4 0.0 3.5 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|289582943|ref|YP_003481409.1| - 1.1e-06 28.8 0.6 0.14 12.5 0.2 4.2 4 1 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|289582943|ref|YP_003481409.1| - 2e-06 28.1 9.7 0.042 14.1 0.0 5.8 5 1 1 6 6 6 2 GAF domain GAF_3 PF13492.6 gi|289582943|ref|YP_003481409.1| - 3.4e-06 27.4 0.1 0.0056 17.0 0.0 3.1 3 1 0 3 3 3 2 GAF domain GAF PF01590.26 gi|289582943|ref|YP_003481409.1| - 5.3e-05 23.9 0.0 0.00085 20.0 0.0 2.9 1 1 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|289582943|ref|YP_003481409.1| - 0.001 18.9 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|289582943|ref|YP_003481409.1| - 0.0021 18.7 0.0 1.9 9.1 0.0 3.6 2 1 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|289582943|ref|YP_003481409.1| - 0.0086 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|289582943|ref|YP_003481409.1| - 0.02 14.9 0.0 0.083 12.9 0.0 2.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Stealth_CR3 PF17102.5 gi|289582943|ref|YP_003481409.1| - 0.026 14.4 0.9 0.95 9.4 0.1 3.0 2 0 0 2 2 2 0 Stealth protein CR3, conserved region 3 dCache_1 PF02743.18 gi|289582943|ref|YP_003481409.1| - 0.073 12.9 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Cache domain ABC2_membrane PF01061.24 gi|289582944|ref|YP_003481410.1| - 3.9e-27 95.0 8.4 6e-27 94.4 8.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|289582944|ref|YP_003481410.1| - 4.5e-15 55.6 3.5 4.5e-15 55.6 3.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|289582944|ref|YP_003481410.1| - 2.6e-06 27.0 9.2 2.6e-06 27.0 9.2 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289582944|ref|YP_003481410.1| - 0.00027 21.0 1.8 0.00047 20.2 1.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|289582944|ref|YP_003481410.1| - 0.0067 15.6 0.7 0.0096 15.1 0.7 1.1 1 0 0 1 1 1 1 Membrane protein of 12 TMs DUF2070 PF09843.9 gi|289582944|ref|YP_003481410.1| - 0.14 10.5 7.1 0.17 10.2 7.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|289582945|ref|YP_003481411.1| - 2.5e-28 99.3 0.0 4.7e-28 98.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289582945|ref|YP_003481411.1| - 3.2e-16 60.0 0.0 8.4e-09 35.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|289582945|ref|YP_003481411.1| - 0.0005 20.6 0.3 0.00097 19.7 0.3 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|289582945|ref|YP_003481411.1| - 0.00061 19.4 0.0 0.0032 17.1 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|289582945|ref|YP_003481411.1| - 0.00069 19.9 0.1 0.0022 18.2 0.0 2.0 3 1 0 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|289582945|ref|YP_003481411.1| - 0.0014 18.5 0.0 0.26 10.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|289582945|ref|YP_003481411.1| - 0.0049 16.6 0.3 0.012 15.4 0.3 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|289582945|ref|YP_003481411.1| - 0.0054 16.5 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|289582945|ref|YP_003481411.1| - 0.015 15.5 0.0 0.06 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 gi|289582945|ref|YP_003481411.1| - 0.019 15.7 0.0 0.043 14.5 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) TsaE PF02367.17 gi|289582945|ref|YP_003481411.1| - 0.026 14.5 0.1 0.054 13.5 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|289582945|ref|YP_003481411.1| - 0.027 14.6 0.0 0.071 13.2 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 gi|289582945|ref|YP_003481411.1| - 0.027 14.9 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289582945|ref|YP_003481411.1| - 0.039 14.2 0.0 0.067 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|289582945|ref|YP_003481411.1| - 0.045 14.1 0.1 0.085 13.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Toprim_3 PF13362.6 gi|289582945|ref|YP_003481411.1| - 0.045 14.1 0.0 6.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Toprim domain RsgA_GTPase PF03193.16 gi|289582945|ref|YP_003481411.1| - 0.093 12.6 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|289582945|ref|YP_003481411.1| - 0.1 13.1 2.7 3.2 8.3 0.8 3.0 3 0 0 3 3 3 0 AAA domain AAA_27 PF13514.6 gi|289582945|ref|YP_003481411.1| - 0.11 12.1 0.1 0.26 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|289582945|ref|YP_003481411.1| - 0.11 12.5 0.0 0.93 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 gi|289582945|ref|YP_003481411.1| - 0.14 11.6 0.0 0.61 9.5 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Metallophos_2 PF12850.7 gi|289582946|ref|YP_003481412.1| - 9.4e-12 45.4 0.0 6.9e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|289582946|ref|YP_003481412.1| - 3.3e-10 40.8 0.2 3.7e-09 37.4 0.4 2.0 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Bac_luciferase PF00296.20 gi|289582947|ref|YP_003481413.1| - 1.4e-54 185.7 5.7 1.6e-54 185.4 5.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase HemY_N PF07219.13 gi|289582948|ref|YP_003481414.1| - 0.05 13.8 0.0 0.061 13.5 0.0 1.1 1 0 0 1 1 1 0 HemY protein N-terminus VAPB_antitox PF02697.14 gi|289582949|ref|YP_003481415.1| - 5.5e-15 55.9 0.1 6.9e-15 55.6 0.1 1.2 1 1 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|289582950|ref|YP_003481416.1| - 3.6e-11 43.6 0.1 4.2e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|289582950|ref|YP_003481416.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) SHMT PF00464.19 gi|289582951|ref|YP_003481417.1| - 4.3e-155 516.2 0.0 5.1e-155 516.0 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|289582951|ref|YP_003481417.1| - 6.9e-09 35.3 0.0 1.2e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|289582951|ref|YP_003481417.1| - 1.4e-07 31.1 0.1 0.0028 17.0 0.1 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|289582951|ref|YP_003481417.1| - 0.0042 16.4 0.3 0.0059 16.0 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family RNase_P_p30 PF01876.16 gi|289582956|ref|YP_003481422.1| - 2e-36 125.5 0.0 2.4e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Methyltransf_25 PF13649.6 gi|289582957|ref|YP_003481423.1| - 3.2e-18 66.2 0.1 6.4e-18 65.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582957|ref|YP_003481423.1| - 1.3e-15 57.5 0.0 2.3e-15 56.7 0.1 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582957|ref|YP_003481423.1| - 1e-13 51.7 0.1 5.7e-13 49.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582957|ref|YP_003481423.1| - 1.4e-10 41.8 0.0 2.5e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289582957|ref|YP_003481423.1| - 1.5e-10 40.8 0.0 4.8e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|289582957|ref|YP_003481423.1| - 6e-08 32.7 0.0 1.4e-07 31.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|289582957|ref|YP_003481423.1| - 1.5e-06 27.9 0.0 2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|289582957|ref|YP_003481423.1| - 0.00034 20.1 0.2 0.00049 19.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|289582957|ref|YP_003481423.1| - 0.0021 17.1 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.12 gi|289582957|ref|YP_003481423.1| - 0.0026 16.9 0.0 0.0037 16.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.7 gi|289582957|ref|YP_003481423.1| - 0.014 15.3 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|289582957|ref|YP_003481423.1| - 0.023 14.7 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|289582957|ref|YP_003481423.1| - 0.053 13.0 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Ribosomal_L18p PF00861.22 gi|289582957|ref|YP_003481423.1| - 0.081 13.3 0.1 0.3 11.5 0.0 2.0 2 1 0 2 2 2 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PCMT PF01135.19 gi|289582957|ref|YP_003481423.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|289582957|ref|YP_003481423.1| - 0.18 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase RNase_P_Rpp14 PF01900.19 gi|289582958|ref|YP_003481424.1| - 4e-18 65.5 0.0 5.6e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Whi5 PF08528.11 gi|289582958|ref|YP_003481424.1| - 0.051 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Whi5 like Proteasome PF00227.26 gi|289582959|ref|YP_003481425.1| - 7.8e-57 191.8 0.0 9.5e-57 191.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|289582959|ref|YP_003481425.1| - 8.9e-14 50.9 0.1 1.5e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|289582960|ref|YP_003481426.1| - 2.8e-20 72.2 0.0 4.5e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|289582960|ref|YP_003481426.1| - 1.4e-18 67.0 0.0 2.3e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain RCDG1 PF15725.5 gi|289582960|ref|YP_003481426.1| - 0.033 14.6 0.2 0.093 13.2 0.1 2.0 2 0 0 2 2 2 0 Renal cancer differentiation gene 1 protein FUN14 PF04930.15 gi|289582963|ref|YP_003481429.1| - 1.3e-18 67.2 2.5 1.5e-18 67.0 2.5 1.1 1 0 0 1 1 1 1 FUN14 family Gly-zipper_Omp PF13488.6 gi|289582963|ref|YP_003481429.1| - 0.61 10.1 4.0 4.1 7.5 0.9 2.3 2 0 0 2 2 2 0 Glycine zipper GTP-bdg_N PF13167.6 gi|289582964|ref|YP_003481430.1| - 1e-22 80.6 0.0 3.7e-22 78.8 0.0 2.0 2 0 0 2 2 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|289582964|ref|YP_003481430.1| - 3.2e-18 65.9 0.0 7.6e-18 64.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|289582964|ref|YP_003481430.1| - 6.4e-16 58.7 7.0 6.4e-16 58.7 7.0 2.0 2 0 0 2 2 2 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|289582964|ref|YP_003481430.1| - 8.4e-12 45.0 0.3 2.5e-11 43.5 0.3 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|289582964|ref|YP_003481430.1| - 5.6e-11 42.6 0.6 2e-05 24.5 0.2 2.3 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|289582964|ref|YP_003481430.1| - 3.3e-07 30.3 0.1 6.6e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|289582964|ref|YP_003481430.1| - 9.6e-07 28.6 0.7 9.7e-05 22.0 0.2 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|289582964|ref|YP_003481430.1| - 2.6e-05 23.8 0.4 0.025 14.1 0.1 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|289582964|ref|YP_003481430.1| - 0.0011 18.7 0.0 0.077 12.7 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|289582964|ref|YP_003481430.1| - 0.0021 17.5 0.7 0.61 9.5 0.3 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_16 PF13191.6 gi|289582964|ref|YP_003481430.1| - 0.0028 18.1 1.2 0.0028 18.1 1.2 2.1 1 1 1 2 2 2 1 AAA ATPase domain MnmE_helical PF12631.7 gi|289582964|ref|YP_003481430.1| - 0.0037 17.5 0.2 0.0069 16.6 0.2 1.4 1 0 0 1 1 1 1 MnmE helical domain AAA_18 PF13238.6 gi|289582964|ref|YP_003481430.1| - 0.0041 17.6 1.2 0.023 15.2 0.1 2.7 2 1 0 2 2 2 1 AAA domain Roc PF08477.13 gi|289582964|ref|YP_003481430.1| - 0.0088 16.3 0.0 0.16 12.2 0.0 2.4 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 gi|289582964|ref|YP_003481430.1| - 0.021 15.3 0.0 0.058 13.9 0.0 1.8 2 1 0 2 2 2 0 ABC transporter AAA_14 PF13173.6 gi|289582964|ref|YP_003481430.1| - 0.097 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NOG1 PF06858.14 gi|289582964|ref|YP_003481430.1| - 0.14 11.9 0.2 0.6 9.9 0.2 2.2 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_23 PF13476.6 gi|289582964|ref|YP_003481430.1| - 0.81 10.1 3.6 24 5.3 0.0 2.5 3 0 0 3 3 3 0 AAA domain Thiolase_N PF00108.23 gi|289582965|ref|YP_003481431.1| - 1e-55 188.9 0.0 1.4e-55 188.5 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289582965|ref|YP_003481431.1| - 2.6e-08 33.6 0.3 1.4e-07 31.2 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289582965|ref|YP_003481431.1| - 0.021 14.4 1.1 0.057 13.0 0.4 2.0 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|289582965|ref|YP_003481431.1| - 0.022 14.8 0.2 10 6.2 0.0 3.4 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|289582966|ref|YP_003481432.1| - 2.5e-05 24.2 0.7 3.8e-05 23.6 0.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF591 PF04569.14 gi|289582967|ref|YP_003481433.1| - 3.7 7.7 7.1 0.16 12.1 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function ZapB PF06005.12 gi|289582967|ref|YP_003481433.1| - 6.3 7.3 7.0 35 4.9 1.7 2.8 3 0 0 3 3 3 0 Cell division protein ZapB RNase_H_2 PF13482.6 gi|289582968|ref|YP_003481434.1| - 1.2e-35 123.0 0.0 1.5e-35 122.6 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily 4HBT_2 PF13279.6 gi|289582969|ref|YP_003481435.1| - 4.7e-15 56.2 0.0 6.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|289582969|ref|YP_003481435.1| - 1.8e-12 47.4 0.3 3.9e-12 46.4 0.1 1.6 2 0 0 2 2 2 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|289582969|ref|YP_003481435.1| - 4.2e-12 45.9 0.0 2.1e-09 37.1 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase CARDB PF07705.11 gi|289582969|ref|YP_003481435.1| - 0.055 13.7 0.0 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 CARDB HalOD1 PF18545.1 gi|289582970|ref|YP_003481436.1| - 1.3e-25 89.4 0.2 1.5e-25 89.2 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MCPsignal PF00015.21 gi|289582971|ref|YP_003481437.1| - 1.8e-43 148.3 52.4 1.4e-41 142.1 28.2 4.6 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 gi|289582971|ref|YP_003481437.1| - 2.4e-05 24.4 25.7 0.25 11.4 4.0 4.4 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|289582971|ref|YP_003481437.1| - 3.3e-05 23.9 33.7 0.049 13.7 2.1 4.3 2 2 2 4 4 4 4 Laminin Domain II AIP3 PF03915.13 gi|289582971|ref|YP_003481437.1| - 0.00042 19.5 20.3 0.00054 19.2 20.3 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 Syntaxin-6_N PF09177.11 gi|289582971|ref|YP_003481437.1| - 0.0017 18.8 24.8 0.32 11.6 0.7 4.5 2 2 2 4 4 4 3 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|289582971|ref|YP_003481437.1| - 0.0031 17.9 27.0 0.51 10.8 5.6 6.2 3 2 2 5 5 5 2 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|289582971|ref|YP_003481437.1| - 0.0058 16.9 26.0 0.99 9.8 2.1 4.4 2 2 0 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|289582971|ref|YP_003481437.1| - 0.0058 16.9 31.4 1 9.7 1.4 4.6 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.8 gi|289582971|ref|YP_003481437.1| - 0.013 14.8 30.6 0.08 12.2 3.0 3.7 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) Syntaxin_2 PF14523.6 gi|289582971|ref|YP_003481437.1| - 0.014 15.7 9.4 1.6 9.1 0.1 4.2 1 1 1 3 3 3 0 Syntaxin-like protein Spectrin PF00435.21 gi|289582971|ref|YP_003481437.1| - 0.017 15.6 19.3 0.32 11.5 1.6 4.3 2 2 1 3 3 3 0 Spectrin repeat Sec34 PF04136.15 gi|289582971|ref|YP_003481437.1| - 0.018 14.9 15.0 0.32 10.9 2.6 4.4 1 1 3 4 4 4 0 Sec34-like family Fib_alpha PF08702.10 gi|289582971|ref|YP_003481437.1| - 0.057 13.6 21.3 0.61 10.3 1.2 3.9 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family Nup88 PF10168.9 gi|289582971|ref|YP_003481437.1| - 0.064 11.1 15.6 0.033 12.0 4.5 2.1 1 1 1 2 2 2 0 Nuclear pore component LUC7 PF03194.15 gi|289582971|ref|YP_003481437.1| - 0.1 12.3 21.2 0.19 11.3 4.4 2.4 1 1 1 2 2 2 0 LUC7 N_terminus COG5 PF10392.9 gi|289582971|ref|YP_003481437.1| - 0.11 12.7 17.6 0.25 11.5 2.3 3.8 1 1 3 4 4 4 0 Golgi transport complex subunit 5 FUSC PF04632.12 gi|289582971|ref|YP_003481437.1| - 0.11 11.0 15.9 0.011 14.4 3.7 2.3 1 1 1 2 2 2 0 Fusaric acid resistance protein family Noelin-1 PF12308.8 gi|289582971|ref|YP_003481437.1| - 0.11 12.4 7.2 1.4 9.0 0.1 4.0 1 1 3 4 4 4 0 Neurogenesis glycoprotein CREPT PF16566.5 gi|289582971|ref|YP_003481437.1| - 0.13 12.4 13.5 2 8.6 2.4 3.7 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour FlgN PF05130.12 gi|289582971|ref|YP_003481437.1| - 0.14 12.6 21.8 0.064 13.8 4.4 3.4 1 1 2 3 3 3 0 FlgN protein FlaC_arch PF05377.11 gi|289582971|ref|YP_003481437.1| - 0.18 12.3 25.0 1.2 9.6 0.5 6.3 3 2 4 7 7 7 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|289582971|ref|YP_003481437.1| - 0.21 10.4 28.9 0.07 12.0 7.2 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein TMPIT PF07851.13 gi|289582971|ref|YP_003481437.1| - 0.28 10.4 16.3 5.3 6.2 1.5 3.3 1 1 2 3 3 3 0 TMPIT-like protein CHDCT2 PF08074.11 gi|289582971|ref|YP_003481437.1| - 0.29 11.3 10.7 2.3 8.4 1.7 2.6 2 1 0 2 2 2 0 CHDCT2 (NUC038) domain Occludin_ELL PF07303.13 gi|289582971|ref|YP_003481437.1| - 0.33 11.7 3.3 18 6.1 0.1 3.9 2 2 0 3 3 3 0 Occludin homology domain Mce4_CUP1 PF11887.8 gi|289582971|ref|YP_003481437.1| - 0.34 10.3 19.3 0.069 12.6 5.3 3.3 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative FleQ PF06490.11 gi|289582971|ref|YP_003481437.1| - 0.88 10.0 8.7 0.082 13.3 0.7 2.9 1 1 0 3 3 3 0 Flagellar regulatory protein FleQ DUF16 PF01519.16 gi|289582971|ref|YP_003481437.1| - 0.94 10.0 21.4 13 6.3 0.1 4.6 1 1 0 2 2 1 0 Protein of unknown function DUF16 Baculo_F PF12259.8 gi|289582971|ref|YP_003481437.1| - 1 7.8 14.6 3.3 6.1 1.5 2.3 1 1 1 2 2 2 0 Baculovirus F protein LOH1CR12 PF10158.9 gi|289582971|ref|YP_003481437.1| - 1.1 9.3 12.1 4.2 7.4 0.8 3.4 1 1 2 4 4 4 0 Tumour suppressor protein CheZ PF04344.13 gi|289582971|ref|YP_003481437.1| - 1.2 9.0 21.2 1.5 8.7 2.8 3.1 1 1 2 3 3 3 0 Chemotaxis phosphatase, CheZ Atg14 PF10186.9 gi|289582971|ref|YP_003481437.1| - 1.4 7.9 15.5 0.55 9.3 4.2 2.7 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 MscS_porin PF12795.7 gi|289582971|ref|YP_003481437.1| - 1.7 8.1 30.8 0.66 9.5 3.7 3.7 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain RapH_N PF18801.1 gi|289582971|ref|YP_003481437.1| - 1.9 8.6 5.3 12 6.1 0.1 3.8 3 0 0 3 3 3 0 response regulator aspartate phosphatase H, N terminal Seryl_tRNA_N PF02403.22 gi|289582971|ref|YP_003481437.1| - 2.1 8.6 25.3 1.4 9.2 4.9 4.1 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|289582971|ref|YP_003481437.1| - 2.4 8.2 21.4 1.3 9.0 1.5 3.9 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fmp27_WPPW PF10359.9 gi|289582971|ref|YP_003481437.1| - 3.4 6.4 18.5 0.33 9.8 6.0 3.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain UPF0242 PF06785.11 gi|289582971|ref|YP_003481437.1| - 4.1 7.4 17.6 8.8 6.4 1.4 2.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus COG2 PF06148.11 gi|289582971|ref|YP_003481437.1| - 4.5 7.4 20.5 8.6 6.5 1.0 4.6 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4200 PF13863.6 gi|289582971|ref|YP_003481437.1| - 6 7.3 16.7 7.9 6.9 1.5 3.9 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Fez1 PF06818.15 gi|289582971|ref|YP_003481437.1| - 6.1 7.3 20.4 4.2 7.8 8.4 2.4 1 1 1 2 2 2 0 Fez1 Goodbye PF17109.5 gi|289582971|ref|YP_003481437.1| - 7 7.1 13.9 13 6.2 1.9 3.7 2 2 1 3 3 3 0 fungal STAND N-terminal Goodbye domain HMMR_N PF15905.5 gi|289582971|ref|YP_003481437.1| - 7.1 6.0 20.6 0.62 9.5 2.9 2.8 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF489 PF04356.12 gi|289582971|ref|YP_003481437.1| - 7.4 6.5 11.5 5 7.1 3.2 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF489) DUF1759 PF03564.15 gi|289582971|ref|YP_003481437.1| - 7.7 6.4 10.9 6.5 6.7 0.9 3.7 1 1 4 5 5 5 0 Protein of unknown function (DUF1759) DUF2203 PF09969.9 gi|289582971|ref|YP_003481437.1| - 8.4 7.1 25.4 1.2 9.9 3.0 4.2 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) TSNAXIP1_N PF15739.5 gi|289582971|ref|YP_003481437.1| - 8.7 6.8 15.0 6.7 7.1 0.8 3.5 2 2 1 3 3 3 0 Translin-associated factor X-interacting N-terminus T2SSF PF00482.23 gi|289582971|ref|YP_003481437.1| - 8.9 6.3 17.6 13 5.7 2.2 4.1 1 1 3 4 4 4 0 Type II secretion system (T2SS), protein F TPR_MLP1_2 PF07926.12 gi|289582971|ref|YP_003481437.1| - 9 6.4 30.6 13 5.8 13.1 3.3 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Acetyltransf_1 PF00583.25 gi|289582972|ref|YP_003481438.1| - 7e-18 65.0 0.0 7.8e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289582972|ref|YP_003481438.1| - 2.1e-15 56.8 0.0 2.7e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289582972|ref|YP_003481438.1| - 1.6e-14 54.1 0.0 2.2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289582972|ref|YP_003481438.1| - 1e-08 35.0 0.1 2e-08 34.1 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|289582972|ref|YP_003481438.1| - 3.2e-06 27.3 0.1 0.00073 19.6 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289582972|ref|YP_003481438.1| - 4.6e-06 27.3 0.1 5.5e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289582972|ref|YP_003481438.1| - 0.00019 21.5 0.0 0.00031 20.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|289582972|ref|YP_003481438.1| - 0.0054 16.2 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|289582972|ref|YP_003481438.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289582972|ref|YP_003481438.1| - 0.049 13.8 0.0 0.058 13.5 0.0 1.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|289582972|ref|YP_003481438.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase PGK PF00162.19 gi|289582973|ref|YP_003481439.1| - 1.1e-103 347.1 0.0 1.2e-103 347.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase CBS PF00571.28 gi|289582974|ref|YP_003481440.1| - 9e-23 80.5 3.4 6.2e-15 55.4 0.4 2.1 2 0 0 2 2 2 2 CBS domain Sulphotransf PF09037.10 gi|289582974|ref|YP_003481440.1| - 0.038 13.5 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Stf0 sulphotransferase TF_Zn_Ribbon PF08271.12 gi|289582974|ref|YP_003481440.1| - 0.35 10.4 3.4 1.4 8.5 3.5 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding GCH_III PF05165.12 gi|289582975|ref|YP_003481441.1| - 5e-86 288.0 0.1 6e-86 287.7 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|289582975|ref|YP_003481441.1| - 3e-05 24.2 0.0 0.034 14.4 0.0 2.1 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|289582975|ref|YP_003481441.1| - 0.032 14.6 0.0 0.29 11.5 0.0 2.0 2 0 0 2 2 2 0 minimal CRISPR polymerase domain Acetyltransf_1 PF00583.25 gi|289582977|ref|YP_003481443.1| - 2.2e-12 47.3 0.0 2.5e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|289582977|ref|YP_003481443.1| - 3e-09 36.9 0.0 3.9e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|289582977|ref|YP_003481443.1| - 1.3e-08 35.1 0.0 1.9e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289582977|ref|YP_003481443.1| - 5e-07 30.5 0.0 6.1e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289582977|ref|YP_003481443.1| - 8.3e-06 25.7 0.0 1.6e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|289582977|ref|YP_003481443.1| - 0.00052 19.7 0.1 0.00069 19.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|289582977|ref|YP_003481443.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Methyltransf_25 PF13649.6 gi|289582978|ref|YP_003481444.1| - 8e-23 81.0 0.0 1.4e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289582978|ref|YP_003481444.1| - 9.8e-23 80.6 0.0 1.8e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289582978|ref|YP_003481444.1| - 3.5e-20 72.4 0.0 4.6e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289582978|ref|YP_003481444.1| - 3.2e-17 63.1 0.0 5.5e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|289582978|ref|YP_003481444.1| - 1.1e-15 57.8 0.0 1.7e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|289582978|ref|YP_003481444.1| - 2.4e-09 36.9 0.0 1.6e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|289582978|ref|YP_003481444.1| - 3e-06 27.1 0.0 4.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|289582978|ref|YP_003481444.1| - 1.1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|289582978|ref|YP_003481444.1| - 7.7e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|289582978|ref|YP_003481444.1| - 8e-05 22.3 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|289582978|ref|YP_003481444.1| - 0.00015 21.8 0.0 0.00022 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|289582978|ref|YP_003481444.1| - 0.00025 20.1 0.0 0.00035 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|289582978|ref|YP_003481444.1| - 0.001 18.2 0.0 0.0014 17.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|289582978|ref|YP_003481444.1| - 0.0039 16.8 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.12 gi|289582978|ref|YP_003481444.1| - 0.0052 15.9 0.0 0.0071 15.5 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.19 gi|289582978|ref|YP_003481444.1| - 0.011 15.9 0.0 0.024 14.7 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase TPMT PF05724.11 gi|289582978|ref|YP_003481444.1| - 0.025 14.3 0.0 0.075 12.7 0.0 1.9 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Pox_MCEL PF03291.16 gi|289582978|ref|YP_003481444.1| - 0.03 13.4 0.0 0.31 10.1 0.0 1.9 1 1 1 2 2 2 0 mRNA capping enzyme TehB PF03848.14 gi|289582978|ref|YP_003481444.1| - 0.092 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltr_RsmB-F PF01189.17 gi|289582978|ref|YP_003481444.1| - 0.23 11.1 0.0 0.89 9.2 0.0 1.8 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F CoA_transf_3 PF02515.17 gi|289582979|ref|YP_003481445.1| - 2.2e-121 405.5 0.0 2.4e-121 405.3 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III DUF3850 PF12961.7 gi|289582979|ref|YP_003481445.1| - 0.2 11.7 0.1 0.49 10.5 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3850) B12-binding PF02310.19 gi|289582980|ref|YP_003481446.1| - 3e-17 62.8 0.9 3.7e-17 62.5 0.9 1.1 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|289582980|ref|YP_003481446.1| - 0.0031 17.5 0.3 0.16 12.0 0.0 2.2 1 1 1 2 2 2 2 Zinc-binding dehydrogenase Met_asp_mut_E PF06368.11 gi|289582981|ref|YP_003481447.1| - 1.7e-209 695.8 0.0 1.9e-209 695.6 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.11 gi|289582982|ref|YP_003481448.1| - 4.7e-115 383.0 0.0 6.4e-115 382.6 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|289582982|ref|YP_003481448.1| - 8.2e-70 233.5 0.7 1.7e-69 232.5 0.7 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|289582982|ref|YP_003481448.1| - 2.8e-13 49.9 0.1 4.8e-13 49.2 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MaoC_dehydrat_N PF13452.6 gi|289582983|ref|YP_003481449.1| - 5e-07 29.9 0.2 0.013 15.6 0.0 2.7 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|289582983|ref|YP_003481449.1| - 1.1e-06 28.2 0.0 0.00011 21.8 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain HpcH_HpaI PF03328.14 gi|289582984|ref|YP_003481450.1| - 2.1e-14 53.2 0.0 9.3e-14 51.1 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|289582984|ref|YP_003481450.1| - 0.00025 19.4 0.0 0.12 10.6 0.0 2.2 2 0 0 2 2 2 2 Malate synthase AA_permease_N PF08403.10 gi|289582984|ref|YP_003481450.1| - 0.16 11.5 0.0 0.44 10.1 0.0 1.7 1 0 0 1 1 1 0 Amino acid permease N-terminal DUF3382 PF11862.8 gi|289582985|ref|YP_003481451.1| - 0.036 14.4 0.1 0.05 13.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) UPF0242 PF06785.11 gi|289582985|ref|YP_003481451.1| - 0.31 11.1 0.2 0.33 11.0 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Phage_holin_2_4 PF16082.5 gi|289582985|ref|YP_003481451.1| - 0.76 9.6 2.8 4.2 7.2 2.8 1.9 1 1 0 1 1 1 0 Bacteriophage holin family, superfamily II-like DUF2064 PF09837.9 gi|289582986|ref|YP_003481452.1| - 0.00023 21.0 0.1 0.00048 19.9 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) FtsX PF02687.21 gi|289582987|ref|YP_003481453.1| - 0.052 14.0 2.7 0.061 13.8 2.7 1.0 1 0 0 1 1 1 0 FtsX-like permease family Phage_holin_3_6 PF07332.11 gi|289582987|ref|YP_003481453.1| - 0.076 13.1 3.1 0.088 12.9 3.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Gram_pos_anchor PF00746.21 gi|289582987|ref|YP_003481453.1| - 0.31 11.0 5.0 8.2 6.5 0.1 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif SPC12 PF06645.13 gi|289582987|ref|YP_003481453.1| - 0.59 10.3 5.2 0.84 9.8 5.2 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) UDG PF03167.19 gi|289582988|ref|YP_003481454.1| - 3e-20 72.8 0.0 3.6e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ParA PF10609.9 gi|289582990|ref|YP_003481456.1| - 4e-100 334.3 0.0 4.8e-100 334.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 gi|289582990|ref|YP_003481456.1| - 9.1e-15 54.6 0.3 2.9e-14 53.0 0.1 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|289582990|ref|YP_003481456.1| - 1.4e-14 54.3 0.0 1e-13 51.5 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|289582990|ref|YP_003481456.1| - 2.9e-10 40.4 0.1 1.1e-08 35.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|289582990|ref|YP_003481456.1| - 1.1e-07 31.4 0.0 1.5e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|289582990|ref|YP_003481456.1| - 6.6e-05 22.5 0.0 0.0096 15.4 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|289582990|ref|YP_003481456.1| - 0.00015 21.1 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|289582990|ref|YP_003481456.1| - 0.00021 20.6 3.5 0.00049 19.4 0.6 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|289582990|ref|YP_003481456.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1610 PF07754.11 gi|289582990|ref|YP_003481456.1| - 0.027 14.4 0.2 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AAA_26 PF13500.6 gi|289582990|ref|YP_003481456.1| - 0.031 14.1 0.0 4 7.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|289582990|ref|YP_003481456.1| - 0.064 12.7 1.1 0.36 10.3 0.5 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ RsgA_GTPase PF03193.16 gi|289582990|ref|YP_003481456.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase CLP1_P PF16575.5 gi|289582990|ref|YP_003481456.1| - 0.18 11.6 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRR PF07709.11 gi|289582992|ref|YP_003481458.1| - 0.15 12.6 0.9 18 6.3 0.0 3.2 2 1 1 3 3 3 0 Seven Residue Repeat IF-2B PF01008.17 gi|289582993|ref|YP_003481459.1| - 6.4e-50 169.9 0.8 7.6e-50 169.7 0.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Methyltransf_24 PF13578.6 gi|289582993|ref|YP_003481459.1| - 0.055 14.5 0.3 0.11 13.6 0.3 1.5 1 0 0 1 1 1 0 Methyltransferase domain SAS4 PF15460.6 gi|289582993|ref|YP_003481459.1| - 0.071 13.2 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 ApoLp-III PF07464.11 gi|289582993|ref|YP_003481459.1| - 0.32 11.1 5.2 0.3 11.2 2.9 1.7 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF389 PF04087.14 gi|289582994|ref|YP_003481460.1| - 3.5e-36 124.4 13.9 3.5e-36 124.4 13.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF389) DUF2919 PF11143.8 gi|289582994|ref|YP_003481460.1| - 0.08 13.3 1.9 0.12 12.7 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) DUF1269 PF06897.12 gi|289582994|ref|YP_003481460.1| - 0.93 9.8 8.1 34 4.8 6.1 3.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) ThuA PF06283.11 gi|289582995|ref|YP_003481461.1| - 2.4e-34 119.4 0.1 2.8e-34 119.2 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation GFO_IDH_MocA PF01408.22 gi|289582996|ref|YP_003481462.1| - 2.8e-26 92.7 0.8 4.4e-26 92.1 0.1 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|289582996|ref|YP_003481462.1| - 1e-06 28.7 0.0 1.9e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|289582996|ref|YP_003481462.1| - 2.3e-05 24.6 0.0 4.5e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|289582996|ref|YP_003481462.1| - 0.00017 21.2 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|289582996|ref|YP_003481462.1| - 0.001 19.6 0.0 0.0021 18.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|289582996|ref|YP_003481462.1| - 0.009 16.7 0.2 0.016 15.9 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289582996|ref|YP_003481462.1| - 0.021 14.2 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|289582996|ref|YP_003481462.1| - 0.062 14.0 0.2 0.2 12.3 0.2 1.9 1 0 0 1 1 1 0 CoA binding domain Proteasome PF00227.26 gi|289582997|ref|YP_003481463.1| - 1.2e-44 152.1 0.1 1.3e-44 151.9 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit BTP PF05232.12 gi|289582998|ref|YP_003481464.1| - 0.018 15.1 1.2 0.019 15.0 1.2 1.1 1 0 0 1 1 1 0 Chlorhexidine efflux transporter Ost4 PF10215.9 gi|289582998|ref|YP_003481464.1| - 0.14 12.0 0.5 0.14 12.0 0.5 1.7 2 0 0 2 2 2 0 Oligosaccaryltransferase DUF555 PF04475.12 gi|289582999|ref|YP_003481465.1| - 1.6e-47 160.0 0.1 1.9e-47 159.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|289582999|ref|YP_003481465.1| - 0.0084 16.3 0.1 0.022 15.0 0.1 1.6 1 0 0 1 1 1 1 Dodecin CBS PF00571.28 gi|289583000|ref|YP_003481466.1| - 2.5e-22 79.1 0.2 1.6e-11 44.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.6 gi|289583000|ref|YP_003481466.1| - 5.1e-11 42.8 1.5 9.6e-11 41.9 1.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|289583000|ref|YP_003481466.1| - 1.4e-10 41.0 0.1 3.2e-10 39.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|289583000|ref|YP_003481466.1| - 1.7e-06 27.9 0.0 3.5e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|289583000|ref|YP_003481466.1| - 0.00013 21.8 0.1 0.00079 19.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|289583000|ref|YP_003481466.1| - 0.00037 20.3 0.5 0.0018 18.1 0.1 2.4 2 1 1 3 3 3 1 Helix-turn-helix domain Pou PF00157.17 gi|289583000|ref|YP_003481466.1| - 0.0067 16.4 0.0 0.023 14.7 0.0 1.9 1 1 0 1 1 1 1 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|289583000|ref|YP_003481466.1| - 0.012 16.1 0.1 0.027 14.9 0.0 1.7 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|289583000|ref|YP_003481466.1| - 0.15 11.6 0.7 5.1 6.7 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|289583001|ref|YP_003481467.1| - 7.4e-05 22.6 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|289583001|ref|YP_003481467.1| - 0.00094 19.3 0.0 0.0017 18.5 0.0 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family Stk19 PF10494.9 gi|289583001|ref|YP_003481467.1| - 0.0011 18.7 0.0 0.0013 18.4 0.0 1.0 1 0 0 1 1 1 1 Serine-threonine protein kinase 19 DUF2513 PF10711.9 gi|289583001|ref|YP_003481467.1| - 0.0038 17.5 0.0 0.0059 16.9 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) DUF86 PF01934.17 gi|289583001|ref|YP_003481467.1| - 0.014 15.3 0.0 0.05 13.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF86 HTH_20 PF12840.7 gi|289583001|ref|YP_003481467.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|289583001|ref|YP_003481467.1| - 0.037 13.9 0.0 0.079 12.9 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|289583001|ref|YP_003481467.1| - 0.043 14.3 0.0 0.078 13.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|289583001|ref|YP_003481467.1| - 0.045 13.6 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RuBisCO_small PF00101.20 gi|289583001|ref|YP_003481467.1| - 0.079 13.0 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 Ribulose bisphosphate carboxylase, small chain Aldo_ket_red PF00248.21 gi|289583003|ref|YP_003481469.1| - 6e-73 245.6 0.0 6.7e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Imm64 PF15600.6 gi|289583003|ref|YP_003481469.1| - 0.083 12.6 0.0 0.77 9.4 0.0 2.1 2 0 0 2 2 2 0 Immunity protein 64 Trypan_PARP PF05887.11 gi|289583005|ref|YP_003481471.1| - 0.039 13.9 0.4 0.052 13.5 0.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PsbI PF02532.14 gi|289583005|ref|YP_003481471.1| - 0.051 13.5 1.4 0.18 11.7 1.4 1.9 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) FA_desaturase PF00487.24 gi|289583005|ref|YP_003481471.1| - 4.8 6.9 9.8 10 5.9 9.9 1.5 1 1 0 1 1 1 0 Fatty acid desaturase Penicil_amidase PF01804.18 gi|289583006|ref|YP_003481472.1| - 6.5e-191 636.8 6.4 8.9e-191 636.3 6.4 1.1 1 0 0 1 1 1 1 Penicillin amidase PEP_mutase PF13714.6 gi|289583008|ref|YP_003481474.1| - 3.8e-40 137.8 0.1 5e-40 137.5 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|289583008|ref|YP_003481474.1| - 4e-30 104.8 1.2 1.7e-14 53.3 0.6 2.2 1 1 1 2 2 2 2 Isocitrate lyase family HMGL-like PF00682.19 gi|289583008|ref|YP_003481474.1| - 0.064 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 HMGL-like HpcH_HpaI PF03328.14 gi|289583009|ref|YP_003481475.1| - 7.7e-08 31.7 0.0 2e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family MRF_C2 PF13888.6 gi|289583009|ref|YP_003481475.1| - 0.21 11.5 0.0 0.38 10.7 0.0 1.3 1 0 0 1 1 1 0 Myelin gene regulatory factor C-terminal domain 2 HxlR PF01638.17 gi|289583010|ref|YP_003481476.1| - 3.7e-20 71.6 0.0 4.4e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|289583010|ref|YP_003481476.1| - 9.2e-06 25.7 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|289583010|ref|YP_003481476.1| - 0.00049 19.9 0.0 0.00065 19.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|289583010|ref|YP_003481476.1| - 0.00079 19.9 0.0 0.0011 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|289583010|ref|YP_003481476.1| - 0.0023 17.8 0.0 0.0045 16.9 0.0 1.5 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|289583010|ref|YP_003481476.1| - 0.0039 17.0 0.1 0.0058 16.5 0.1 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|289583010|ref|YP_003481476.1| - 0.0045 16.9 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Trp_repressor PF01371.19 gi|289583010|ref|YP_003481476.1| - 0.0062 16.6 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein TrmB PF01978.19 gi|289583010|ref|YP_003481476.1| - 0.0085 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|289583010|ref|YP_003481476.1| - 0.08 13.1 0.1 14 5.9 0.1 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Replic_Relax PF13814.6 gi|289583010|ref|YP_003481476.1| - 0.083 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 gi|289583010|ref|YP_003481476.1| - 0.098 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix OGFr_N PF04664.13 gi|289583010|ref|YP_003481476.1| - 0.17 11.4 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region UPF0179 PF03684.13 gi|289583011|ref|YP_003481477.1| - 4.2e-46 156.3 0.0 4.7e-46 156.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|289583011|ref|YP_003481477.1| - 0.026 14.8 0.0 0.04 14.1 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain PrkA PF06798.12 gi|289583013|ref|YP_003481479.1| - 8.9e-72 241.8 8.2 8.9e-72 241.8 8.2 2.2 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|289583013|ref|YP_003481479.1| - 1.9e-63 214.6 0.1 2.9e-63 213.9 0.1 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.14 gi|289583013|ref|YP_003481479.1| - 0.27 11.2 0.8 28 4.7 0.0 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) PrkA PF06798.12 gi|289583014|ref|YP_003481480.1| - 1.5e-50 172.3 0.6 1.5e-50 172.3 0.6 1.8 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|289583014|ref|YP_003481480.1| - 2.3e-14 53.1 0.0 1.3e-11 44.1 0.0 3.1 2 1 0 2 2 2 2 PrkA AAA domain DUF444 PF04285.12 gi|289583015|ref|YP_003481481.1| - 6.6e-125 417.5 0.2 7.5e-125 417.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|289583015|ref|YP_003481481.1| - 0.0032 17.5 0.3 0.83 9.8 0.1 2.9 3 0 0 3 3 3 2 Tautomerase enzyme SpoVR PF04293.13 gi|289583016|ref|YP_003481482.1| - 9.9e-90 301.2 6.5 6.7e-75 252.4 2.0 2.2 2 0 0 2 2 2 2 SpoVR like protein SOAR PF16533.5 gi|289583016|ref|YP_003481482.1| - 0.087 12.8 0.0 0.38 10.7 0.0 2.1 1 0 0 1 1 1 0 STIM1 Orai1-activating region DUF1102 PF06510.11 gi|289583017|ref|YP_003481483.1| - 7.9e-05 22.9 0.0 0.00018 21.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 gi|289583018|ref|YP_003481484.1| - 1.5e-08 34.9 7.1 1.9e-08 34.6 6.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) Glug PF07581.12 gi|289583019|ref|YP_003481485.1| - 4.8e-07 29.8 50.5 0.0065 16.8 0.7 8.2 6 1 2 8 8 8 5 The GLUG motif Peptidase_M26_N PF05342.14 gi|289583019|ref|YP_003481485.1| - 0.024 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 M26 IgA1-specific Metallo-endopeptidase N-terminal region DUF1102 PF06510.11 gi|289583020|ref|YP_003481486.1| - 0.00011 22.4 0.1 0.0002 21.6 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) TAT_signal PF10518.9 gi|289583020|ref|YP_003481486.1| - 0.0041 16.9 5.2 0.006 16.4 5.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Ail_Lom PF06316.11 gi|289583020|ref|YP_003481486.1| - 0.035 13.8 0.4 0.17 11.6 0.1 2.1 2 1 0 2 2 2 0 Enterobacterial Ail/Lom protein NPCBM_assoc PF10633.9 gi|289583020|ref|YP_003481486.1| - 0.067 13.4 0.3 0.53 10.6 0.0 2.4 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_S24 PF00717.23 gi|289583021|ref|YP_003481487.1| - 1.4e-07 31.3 0.0 2.7e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like N_BRCA1_IG PF16158.5 gi|289583021|ref|YP_003481487.1| - 0.02 15.6 0.0 0.046 14.4 0.0 1.5 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene DUF5305 PF17231.2 gi|289583022|ref|YP_003481488.1| - 5.2e-49 166.6 0.1 1e-48 165.6 0.0 1.5 2 0 0 2 2 2 1 Family of unknown function (DUF5305) Actino_peptide PF14408.6 gi|289583022|ref|YP_003481488.1| - 0.025 14.7 1.3 0.26 11.4 0.1 3.0 1 1 1 2 2 2 0 Ribosomally synthesised peptide in actinomycetes EpuA PF11772.8 gi|289583022|ref|YP_003481488.1| - 1 9.1 3.8 2.4 7.9 3.8 1.6 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta GDPD PF03009.17 gi|289583024|ref|YP_003481490.1| - 3.1e-26 92.7 0.0 2.6e-24 86.4 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Response_reg PF00072.24 gi|289583025|ref|YP_003481491.1| - 1.3e-19 70.4 0.0 1.5e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Polysacc_deac_2 PF04748.13 gi|289583025|ref|YP_003481491.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase ArsC PF03960.15 gi|289583025|ref|YP_003481491.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 ArsC family adh_short_C2 PF13561.6 gi|289583026|ref|YP_003481492.1| - 4.9e-42 144.1 0.0 8.1e-42 143.4 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|289583026|ref|YP_003481492.1| - 7.8e-39 133.2 0.0 9.3e-39 132.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|289583026|ref|YP_003481492.1| - 2.3e-07 30.5 0.0 5.2e-07 29.4 0.0 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|289583026|ref|YP_003481492.1| - 7e-07 29.3 0.0 9.7e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|289583026|ref|YP_003481492.1| - 0.00057 19.4 0.0 0.00079 18.9 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|289583026|ref|YP_003481492.1| - 0.02 14.8 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|289583026|ref|YP_003481492.1| - 0.021 13.9 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 gi|289583026|ref|YP_003481492.1| - 0.063 12.8 0.6 0.32 10.5 0.6 1.9 1 1 0 1 1 1 0 NmrA-like family 3Beta_HSD PF01073.19 gi|289583026|ref|YP_003481492.1| - 0.18 10.8 0.0 0.26 10.3 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RGS12_usC PF16612.5 gi|289583027|ref|YP_003481493.1| - 0.0012 19.3 2.6 0.0015 19.0 2.6 1.2 1 0 0 1 1 1 1 C-terminal unstructured region of RGS12 4HBT_3 PF13622.6 gi|289583027|ref|YP_003481493.1| - 2.7 8.2 6.2 4.1 7.6 1.9 2.0 1 1 1 2 2 2 0 Thioesterase-like superfamily DUF515 PF04415.12 gi|289583027|ref|YP_003481493.1| - 6.1 5.1 7.1 7 4.9 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Gln-synt_C PF00120.24 gi|289583028|ref|YP_003481494.1| - 1.9e-138 461.2 0.0 2.5e-138 460.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|289583028|ref|YP_003481494.1| - 1.5e-32 111.2 1.8 2e-32 110.7 0.1 2.0 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|289583028|ref|YP_003481494.1| - 0.0027 17.5 0.0 0.02 14.7 0.0 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Thioredoxin PF00085.20 gi|289583029|ref|YP_003481495.1| - 1.7e-11 44.0 0.0 1.9e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|289583029|ref|YP_003481495.1| - 3.3e-06 27.1 0.0 5.4e-06 26.4 0.0 1.3 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|289583029|ref|YP_003481495.1| - 4.3e-06 26.7 0.0 5.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|289583029|ref|YP_003481495.1| - 2.3e-05 24.8 0.1 0.00028 21.3 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.14 gi|289583029|ref|YP_003481495.1| - 0.00017 21.9 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.10 gi|289583029|ref|YP_003481495.1| - 0.021 14.9 0.0 0.048 13.7 0.1 1.6 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.11 gi|289583029|ref|YP_003481495.1| - 0.035 14.1 0.0 0.083 12.9 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|289583029|ref|YP_003481495.1| - 0.041 13.2 0.0 0.063 12.6 0.0 1.3 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Mrr_N PF14338.6 gi|289583030|ref|YP_003481496.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain Bactofilin PF04519.13 gi|289583031|ref|YP_003481497.1| - 0.065 13.5 0.1 0.09 13.1 0.1 1.3 1 0 0 1 1 1 0 Polymer-forming cytoskeletal OAD_gamma PF04277.13 gi|289583033|ref|YP_003481499.1| - 0.096 13.3 0.5 0.21 12.2 0.5 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain DNA_pol_phi PF04931.13 gi|289583033|ref|YP_003481499.1| - 0.5 8.4 1.8 0.68 8.0 1.8 1.1 1 0 0 1 1 1 0 DNA polymerase phi DEAD_assoc PF08494.11 gi|289583034|ref|YP_003481500.1| - 1.2e-36 126.4 0.6 3.1e-36 125.0 0.1 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|289583034|ref|YP_003481500.1| - 3.2e-28 98.7 0.0 6.3e-28 97.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|289583034|ref|YP_003481500.1| - 5.7e-22 78.2 0.0 2.1e-21 76.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|289583034|ref|YP_003481500.1| - 4.4e-08 33.3 0.0 9.9e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|289583034|ref|YP_003481500.1| - 0.037 13.6 0.5 0.17 11.4 0.5 2.1 1 1 0 1 1 1 0 AAA domain Tobravirus_2B PF05271.11 gi|289583034|ref|YP_003481500.1| - 0.11 12.4 0.0 3.4 7.6 0.0 2.6 1 1 1 2 2 2 0 Tobravirus 2B protein HypA PF01155.19 gi|289583034|ref|YP_003481500.1| - 0.13 12.3 0.3 0.4 10.7 0.3 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|289583034|ref|YP_003481500.1| - 0.13 12.4 0.7 0.32 11.2 0.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain AAA_19 PF13245.6 gi|289583034|ref|YP_003481500.1| - 0.16 12.3 0.1 1.6 9.1 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|289583034|ref|YP_003481500.1| - 0.17 12.2 0.8 4.6 7.5 0.8 2.8 1 1 0 1 1 1 0 AAA domain Response_reg PF00072.24 gi|289583035|ref|YP_003481501.1| - 1.8e-14 53.9 0.0 2.1e-14 53.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PS_Dcarbxylase PF02666.15 gi|289583036|ref|YP_003481502.1| - 3.4e-24 85.5 0.0 1.3e-21 77.1 0.0 2.1 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase Biotin_lipoyl PF00364.22 gi|289583036|ref|YP_003481502.1| - 0.015 15.1 0.1 14 5.6 0.0 3.5 4 0 0 4 4 4 0 Biotin-requiring enzyme RnfC_N PF13375.6 gi|289583036|ref|YP_003481502.1| - 0.2 11.6 0.1 1.1 9.2 0.0 2.2 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Catalase PF00199.19 gi|289583037|ref|YP_003481503.1| - 5.7e-169 562.2 0.2 7.8e-169 561.8 0.2 1.2 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 gi|289583037|ref|YP_003481503.1| - 2e-23 82.4 0.1 4.2e-23 81.3 0.1 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive Catalase_C PF18011.1 gi|289583037|ref|YP_003481503.1| - 4.1e-23 81.7 0.0 6.4e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases DJ-1_PfpI PF01965.24 gi|289583037|ref|YP_003481503.1| - 3.2e-14 53.1 1.7 4.1e-13 49.5 0.1 2.5 2 1 1 3 3 3 1 DJ-1/PfpI family AAA PF00004.29 gi|289583038|ref|YP_003481504.1| - 1.2e-96 320.2 0.0 6.7e-48 162.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|289583038|ref|YP_003481504.1| - 1.7e-26 91.7 3.3 3.7e-13 49.1 0.7 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|289583038|ref|YP_003481504.1| - 1.6e-22 79.5 0.7 1.4e-21 76.4 0.5 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|289583038|ref|YP_003481504.1| - 2.5e-15 57.3 0.2 1.4e-06 28.8 0.0 3.9 3 1 0 3 3 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|289583038|ref|YP_003481504.1| - 6e-15 55.3 0.0 2.1e-06 27.5 0.0 3.8 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|289583038|ref|YP_003481504.1| - 2e-14 54.0 0.0 2.1e-06 28.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|289583038|ref|YP_003481504.1| - 5.6e-14 52.5 0.0 1.4e-06 28.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_5 PF07728.14 gi|289583038|ref|YP_003481504.1| - 8.8e-12 45.2 0.6 0.00026 21.0 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|289583038|ref|YP_003481504.1| - 1.8e-10 41.2 0.2 0.0049 17.2 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|289583038|ref|YP_003481504.1| - 2.5e-10 40.5 0.0 0.00051 20.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain TIP49 PF06068.13 gi|289583038|ref|YP_003481504.1| - 1e-09 38.1 0.0 0.00032 20.0 0.0 2.6 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|289583038|ref|YP_003481504.1| - 2.1e-08 34.7 0.1 0.012 16.1 0.0 3.7 4 0 0 4 4 2 2 AAA domain ABC_tran PF00005.27 gi|289583038|ref|YP_003481504.1| - 5.2e-08 33.5 0.1 0.019 15.5 0.0 3.8 5 0 0 5 5 3 2 ABC transporter AAA_28 PF13521.6 gi|289583038|ref|YP_003481504.1| - 6.4e-08 33.0 1.7 0.0081 16.4 0.0 3.9 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|289583038|ref|YP_003481504.1| - 4.8e-07 29.7 0.0 0.022 14.5 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_3 PF07726.11 gi|289583038|ref|YP_003481504.1| - 7e-07 29.2 0.0 0.018 14.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|289583038|ref|YP_003481504.1| - 7.9e-07 29.1 0.0 0.08 12.9 0.0 2.9 3 0 0 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|289583038|ref|YP_003481504.1| - 1.1e-06 28.0 0.0 0.018 14.3 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin RNA_helicase PF00910.22 gi|289583038|ref|YP_003481504.1| - 1.3e-06 28.7 0.0 0.019 15.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|289583038|ref|YP_003481504.1| - 1.4e-06 27.9 0.2 0.062 12.7 0.2 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CDC48_2 PF02933.17 gi|289583038|ref|YP_003481504.1| - 2e-06 27.5 2.6 4.6e-06 26.3 0.7 2.6 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activat PF00158.26 gi|289583038|ref|YP_003481504.1| - 5.4e-06 26.2 0.0 0.19 11.4 0.0 3.3 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|289583038|ref|YP_003481504.1| - 1.8e-05 24.5 0.1 0.37 10.5 0.0 3.6 3 1 1 4 4 4 2 AAA domain AAA_7 PF12775.7 gi|289583038|ref|YP_003481504.1| - 3.5e-05 23.4 0.0 0.065 12.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_11 PF13086.6 gi|289583038|ref|YP_003481504.1| - 4.7e-05 23.3 0.0 0.3 10.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|289583038|ref|YP_003481504.1| - 0.00011 21.6 0.0 0.26 10.5 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|289583038|ref|YP_003481504.1| - 0.00013 21.2 0.0 0.13 11.3 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|289583038|ref|YP_003481504.1| - 0.00014 21.6 6.2 1.4 8.4 0.8 4.3 2 2 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|289583038|ref|YP_003481504.1| - 0.00014 21.6 0.0 1.1 9.0 0.0 3.1 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|289583038|ref|YP_003481504.1| - 0.00017 20.9 0.0 0.43 9.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.16 gi|289583038|ref|YP_003481504.1| - 0.00024 20.6 0.1 0.88 9.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|289583038|ref|YP_003481504.1| - 0.00028 20.8 0.4 0.7 9.8 0.1 3.6 4 0 0 4 4 3 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|289583038|ref|YP_003481504.1| - 0.00039 20.5 0.0 1.1 9.4 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ATPase PF06745.13 gi|289583038|ref|YP_003481504.1| - 0.00055 19.3 0.0 1.1 8.6 0.0 3.2 2 1 0 2 2 2 2 KaiC NB-ARC PF00931.22 gi|289583038|ref|YP_003481504.1| - 0.00089 18.5 0.0 1 8.5 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|289583038|ref|YP_003481504.1| - 0.0016 18.8 0.4 1.2 9.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|289583038|ref|YP_003481504.1| - 0.0033 16.8 0.0 13 5.2 0.0 4.1 5 0 0 5 5 5 0 Bacterial TniB protein AAA_17 PF13207.6 gi|289583038|ref|YP_003481504.1| - 0.0035 17.8 0.0 1.4 9.4 0.0 3.1 2 1 0 2 2 2 1 AAA domain SKI PF01202.22 gi|289583038|ref|YP_003481504.1| - 0.0037 17.4 0.0 3 8.0 0.0 2.8 2 0 0 2 2 2 1 Shikimate kinase ATPase_2 PF01637.18 gi|289583038|ref|YP_003481504.1| - 0.0049 16.8 0.0 1.2 9.0 0.0 3.4 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea AFG1_ATPase PF03969.16 gi|289583038|ref|YP_003481504.1| - 0.0052 15.7 0.0 0.38 9.6 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase CPT PF07931.12 gi|289583038|ref|YP_003481504.1| - 0.0054 16.6 0.0 6.9 6.5 0.0 3.5 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.15 gi|289583038|ref|YP_003481504.1| - 0.0059 16.5 0.0 2.7 7.9 0.0 3.0 2 0 0 2 2 2 1 NTPase Viral_helicase1 PF01443.18 gi|289583038|ref|YP_003481504.1| - 0.0061 16.3 0.0 4 7.1 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|289583038|ref|YP_003481504.1| - 0.0094 15.7 0.0 3.3 7.4 0.0 2.8 2 0 0 2 2 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|289583038|ref|YP_003481504.1| - 0.011 15.9 0.0 1.1 9.3 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase-like family Zot PF05707.12 gi|289583038|ref|YP_003481504.1| - 0.034 13.8 0.0 3.4 7.2 0.0 2.7 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|289583038|ref|YP_003481504.1| - 0.053 13.6 0.0 5.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Torsin Molydop_binding PF01568.21 gi|289583038|ref|YP_003481504.1| - 0.068 13.2 1.9 4 7.5 0.2 2.5 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain ResIII PF04851.15 gi|289583038|ref|YP_003481504.1| - 0.081 12.9 0.0 19 5.2 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DAP3 PF10236.9 gi|289583038|ref|YP_003481504.1| - 0.11 11.6 0.0 4.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Hydin_ADK PF17213.3 gi|289583038|ref|YP_003481504.1| - 0.15 12.3 4.5 4.2 7.6 0.0 3.2 3 1 0 3 3 2 0 Hydin Adenylate kinase-like domain zf-C2H2_3 PF13878.6 gi|289583039|ref|YP_003481505.1| - 0.0094 15.8 1.5 0.016 15.0 1.5 1.5 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.6 gi|289583039|ref|YP_003481505.1| - 0.049 14.0 0.9 0.056 13.8 0.9 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar GHMP_kinases_N PF00288.26 gi|289583042|ref|YP_003481508.1| - 2e-11 43.9 3.1 2e-11 43.9 3.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|289583042|ref|YP_003481508.1| - 0.0014 18.9 0.4 0.0057 17.0 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal CM_2 PF01817.21 gi|289583043|ref|YP_003481509.1| - 4.1e-15 55.9 5.1 4.9e-15 55.6 5.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF2975 PF11188.8 gi|289583044|ref|YP_003481510.1| - 0.015 15.1 1.9 0.017 15.0 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF1129 PF06570.11 gi|289583044|ref|YP_003481510.1| - 0.019 14.4 0.5 0.02 14.4 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF1146 PF06612.11 gi|289583044|ref|YP_003481510.1| - 0.26 11.4 7.2 0.55 10.3 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1146) PemK_toxin PF02452.17 gi|289583045|ref|YP_003481511.1| - 6.4e-28 97.4 0.1 7.2e-28 97.2 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system FtsA PF14450.6 gi|289583046|ref|YP_003481512.1| - 0.17 12.3 0.0 0.2 12.1 0.0 1.1 1 0 0 1 1 1 0 Cell division protein FtsA PIN PF01850.21 gi|289583047|ref|YP_003481513.1| - 1.2e-06 29.0 3.1 1.4e-06 28.8 3.1 1.1 1 0 0 1 1 1 1 PIN domain MraZ PF02381.18 gi|289583048|ref|YP_003481514.1| - 0.01 15.8 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like 7TM_GPCR_Srj PF10319.9 gi|289583048|ref|YP_003481514.1| - 0.017 14.5 0.1 0.021 14.2 0.1 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srj Flavodoxin_5 PF12724.7 gi|289583049|ref|YP_003481515.1| - 1.2e-42 145.6 0.0 1.6e-42 145.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|289583049|ref|YP_003481515.1| - 1.9e-05 24.9 0.2 0.00022 21.5 0.2 2.2 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|289583049|ref|YP_003481515.1| - 0.0023 17.6 0.0 0.0037 17.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain PTS_IIB PF02302.17 gi|289583049|ref|YP_003481515.1| - 0.057 14.1 0.0 0.12 13.1 0.0 1.5 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit TraB PF01963.17 gi|289583050|ref|YP_003481516.1| - 0.015 15.2 0.6 6.5 6.6 0.0 2.7 2 1 0 2 2 2 0 TraB family Antibiotic_NAT PF02522.14 gi|289583051|ref|YP_003481517.1| - 8.3e-80 267.7 0.0 1e-79 267.4 0.0 1.1 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase Lactamase_B PF00753.27 gi|289583052|ref|YP_003481518.1| - 4e-22 79.2 3.6 5.9e-22 78.6 3.5 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289583052|ref|YP_003481518.1| - 3.4e-13 49.6 0.8 9.1e-13 48.2 0.3 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|289583052|ref|YP_003481518.1| - 0.00013 21.9 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|289583052|ref|YP_003481518.1| - 0.0028 17.1 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain AMP-binding PF00501.28 gi|289583053|ref|YP_003481519.1| - 1.2e-106 356.9 0.2 1.4e-106 356.6 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289583053|ref|YP_003481519.1| - 1.3e-19 70.9 0.7 2.9e-19 69.8 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|289583054|ref|YP_003481520.1| - 1.9e-36 125.5 6.6 3.3e-36 124.8 6.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289583054|ref|YP_003481520.1| - 1.2e-19 71.0 2.6 1.5e-19 70.7 0.7 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289583054|ref|YP_003481520.1| - 1.4e-19 70.1 0.0 3.7e-19 68.7 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|289583054|ref|YP_003481520.1| - 3.6e-13 50.0 4.7 7.7e-13 48.9 4.7 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_N PF00108.23 gi|289583055|ref|YP_003481521.1| - 2.4e-57 194.2 0.0 1.1e-56 192.0 0.0 2.1 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289583055|ref|YP_003481521.1| - 3.7e-41 139.6 0.1 6.9e-41 138.8 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289583055|ref|YP_003481521.1| - 0.0021 17.7 0.4 0.013 15.1 0.1 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|289583055|ref|YP_003481521.1| - 0.038 14.2 0.1 0.083 13.1 0.1 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3HCDH_N PF02737.18 gi|289583056|ref|YP_003481522.1| - 8.7e-55 185.4 0.3 4.1e-54 183.2 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|289583056|ref|YP_003481522.1| - 3.2e-11 43.7 0.1 1.2e-10 41.9 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|289583056|ref|YP_003481522.1| - 1.8e-06 28.2 2.4 2.1e-05 24.8 0.5 2.5 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|289583056|ref|YP_003481522.1| - 9.2e-06 25.7 0.1 0.00014 21.8 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|289583056|ref|YP_003481522.1| - 0.00013 22.4 1.4 0.00062 20.3 1.4 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|289583056|ref|YP_003481522.1| - 0.00038 21.0 0.3 0.00092 19.7 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|289583056|ref|YP_003481522.1| - 0.0017 17.7 0.3 0.006 15.8 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289583056|ref|YP_003481522.1| - 0.0042 17.3 0.4 0.0086 16.3 0.4 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|289583056|ref|YP_003481522.1| - 0.019 14.2 0.4 0.029 13.6 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|289583056|ref|YP_003481522.1| - 0.044 13.4 0.7 0.097 12.2 0.3 1.8 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|289583056|ref|YP_003481522.1| - 0.067 12.5 0.3 0.11 11.8 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|289583056|ref|YP_003481522.1| - 0.068 12.7 4.9 0.1 12.2 4.6 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|289583056|ref|YP_003481522.1| - 0.099 12.9 1.9 0.12 12.6 0.3 2.0 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|289583056|ref|YP_003481522.1| - 0.17 12.4 0.3 0.34 11.4 0.3 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding MaoC_dehydrat_N PF13452.6 gi|289583057|ref|YP_003481523.1| - 3.9e-33 114.4 0.8 1.9e-27 96.0 0.1 2.9 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|289583057|ref|YP_003481523.1| - 3.2e-20 71.9 0.0 4.2e-18 65.1 0.0 2.8 3 0 0 3 3 3 2 MaoC like domain Ribonuc_red_sm PF00268.21 gi|289583058|ref|YP_003481524.1| - 2.3e-07 30.6 0.2 6.9e-07 29.0 0.2 1.7 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain AA_permease_2 PF13520.6 gi|289583059|ref|YP_003481525.1| - 4.1e-32 111.5 40.8 5.5e-32 111.1 40.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|289583059|ref|YP_003481525.1| - 3.2e-22 78.8 36.7 5.1e-22 78.1 36.7 1.3 1 1 0 1 1 1 1 Amino acid permease DUF2244 PF10003.9 gi|289583059|ref|YP_003481525.1| - 0.8 9.4 0.0 0.8 9.4 0.0 4.5 5 0 0 5 5 5 0 Integral membrane protein (DUF2244) SNARE_assoc PF09335.11 gi|289583060|ref|YP_003481526.1| - 0.0022 18.5 0.6 0.0028 18.1 0.6 1.1 1 0 0 1 1 1 1 SNARE associated Golgi protein Keratin_assoc PF09775.9 gi|289583060|ref|YP_003481526.1| - 0.098 12.3 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 Acyl-CoA_dh_1 PF00441.24 gi|289583061|ref|YP_003481527.1| - 9.7e-48 162.2 2.3 1.6e-47 161.4 2.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289583061|ref|YP_003481527.1| - 2.7e-28 98.0 0.0 2e-27 95.2 0.0 2.1 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|289583061|ref|YP_003481527.1| - 8.8e-18 65.0 0.1 2.1e-17 63.8 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289583061|ref|YP_003481527.1| - 1.2e-17 64.5 0.5 1.8e-17 63.9 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|289583061|ref|YP_003481527.1| - 0.0012 18.6 0.0 0.0054 16.4 0.0 1.9 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal GerPC PF10737.9 gi|289583061|ref|YP_003481527.1| - 0.049 13.7 0.3 0.095 12.8 0.3 1.4 1 0 0 1 1 1 0 Spore germination protein GerPC DUF3912 PF13051.6 gi|289583061|ref|YP_003481527.1| - 0.051 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) IclR PF01614.18 gi|289583062|ref|YP_003481528.1| - 8.6e-32 109.7 0.0 6.2e-29 100.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289583062|ref|YP_003481528.1| - 1.4e-14 53.6 0.5 2.4e-13 49.6 0.2 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289583062|ref|YP_003481528.1| - 3.6e-07 29.6 0.0 4.4e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289583062|ref|YP_003481528.1| - 3.6e-06 26.7 0.0 3.9e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|289583062|ref|YP_003481528.1| - 4e-06 26.8 0.0 8.8e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289583062|ref|YP_003481528.1| - 0.00055 19.7 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|289583062|ref|YP_003481528.1| - 0.0006 20.2 0.1 0.0014 18.9 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|289583062|ref|YP_003481528.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|289583062|ref|YP_003481528.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|289583062|ref|YP_003481528.1| - 0.0071 16.5 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|289583062|ref|YP_003481528.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|289583062|ref|YP_003481528.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|289583062|ref|YP_003481528.1| - 0.019 15.4 0.0 0.037 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|289583062|ref|YP_003481528.1| - 0.044 14.3 0.1 0.087 13.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.19 gi|289583062|ref|YP_003481528.1| - 0.046 13.3 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF3489 PF11994.8 gi|289583062|ref|YP_003481528.1| - 0.058 13.5 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DprA_WH PF17782.1 gi|289583062|ref|YP_003481528.1| - 0.058 13.5 0.0 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 DprA winged helix domain BLACT_WH PF17778.1 gi|289583062|ref|YP_003481528.1| - 0.07 13.1 0.0 0.25 11.4 0.0 1.9 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_45 PF14947.6 gi|289583062|ref|YP_003481528.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_46 PF15977.5 gi|289583062|ref|YP_003481528.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Usp PF00582.26 gi|289583064|ref|YP_003481530.1| - 4.3e-27 95.3 2.6 4.9e-27 95.2 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|289583064|ref|YP_003481530.1| - 0.0029 17.5 1.6 0.0061 16.5 1.6 1.5 1 1 0 1 1 1 1 Electron transfer flavoprotein domain MatE PF01554.18 gi|289583065|ref|YP_003481531.1| - 2.2e-55 186.7 20.8 3.2e-29 101.6 8.4 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|289583065|ref|YP_003481531.1| - 2.1e-10 40.8 7.2 2.1e-10 40.8 7.2 4.9 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|289583065|ref|YP_003481531.1| - 2e-08 33.3 11.0 8.5e-08 31.2 4.0 2.5 2 1 0 2 2 2 2 Lipid II flippase MurJ Glucos_trans_II PF14264.6 gi|289583066|ref|YP_003481532.1| - 0.0053 16.1 5.0 0.0063 15.9 5.0 1.1 1 0 0 1 1 1 1 Glucosyl transferase GtrII DUF4271 PF14093.6 gi|289583066|ref|YP_003481532.1| - 0.013 15.4 3.5 0.015 15.2 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) DUF1772 PF08592.11 gi|289583066|ref|YP_003481532.1| - 0.33 11.3 3.3 0.33 11.2 2.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) HTH_20 PF12840.7 gi|289583067|ref|YP_003481533.1| - 7.4e-09 35.6 0.6 1.1e-08 35.0 0.6 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289583067|ref|YP_003481533.1| - 0.00062 19.6 0.0 0.00087 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family FUR PF01475.19 gi|289583067|ref|YP_003481533.1| - 0.00077 19.6 0.0 0.0014 18.8 0.0 1.5 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.10 gi|289583067|ref|YP_003481533.1| - 0.0011 18.7 0.1 0.0016 18.2 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289583067|ref|YP_003481533.1| - 0.0027 17.2 0.0 0.0052 16.3 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|289583067|ref|YP_003481533.1| - 0.0053 16.6 0.0 0.0076 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|289583067|ref|YP_003481533.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|289583067|ref|YP_003481533.1| - 0.021 14.8 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 HTH domain PadR PF03551.14 gi|289583067|ref|YP_003481533.1| - 0.023 14.6 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.6 gi|289583067|ref|YP_003481533.1| - 0.049 13.5 0.0 0.097 12.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|289583067|ref|YP_003481533.1| - 0.088 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Hydrolase_4 PF12146.8 gi|289583068|ref|YP_003481534.1| - 1.8e-17 63.4 0.1 8.1e-14 51.5 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|289583068|ref|YP_003481534.1| - 2.2e-15 56.7 0.0 3e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|289583068|ref|YP_003481534.1| - 6.8e-14 53.0 2.0 2.7e-13 51.0 2.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|289583068|ref|YP_003481534.1| - 2.2e-11 43.9 0.0 2.6e-09 37.1 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|289583068|ref|YP_003481534.1| - 1.5e-06 28.0 0.0 4.1e-06 26.6 0.0 1.6 1 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|289583068|ref|YP_003481534.1| - 0.00013 21.6 0.0 0.51 9.9 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family AXE1 PF05448.12 gi|289583068|ref|YP_003481534.1| - 0.00079 18.2 0.1 0.004 15.9 0.0 1.9 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) Amidohydro_2 PF04909.14 gi|289583068|ref|YP_003481534.1| - 0.0027 17.5 0.2 0.0035 17.2 0.2 1.2 1 0 0 1 1 1 1 Amidohydrolase Abhydrolase_3 PF07859.13 gi|289583068|ref|YP_003481534.1| - 0.0078 16.1 0.1 0.015 15.1 0.1 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|289583068|ref|YP_003481534.1| - 0.036 13.9 0.0 24 4.6 0.0 3.0 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|289583068|ref|YP_003481534.1| - 0.12 12.1 0.0 1.9 8.2 0.0 2.3 3 0 0 3 3 3 0 Alpha/beta hydrolase family Peptidase_S28 PF05577.12 gi|289583068|ref|YP_003481534.1| - 0.16 10.7 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Serine carboxypeptidase S28 YdjM PF04307.14 gi|289583069|ref|YP_003481535.1| - 4e-10 39.3 3.9 5e-10 38.9 3.9 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2334 PF10096.9 gi|289583070|ref|YP_003481536.1| - 0.045 13.4 0.1 0.095 12.3 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2334) DUF354 PF04007.12 gi|289583075|ref|YP_003481541.1| - 1.5e-07 30.9 0.0 4e-07 29.4 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|289583075|ref|YP_003481541.1| - 9.3e-06 25.7 0.4 2.1e-05 24.6 0.4 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|289583075|ref|YP_003481541.1| - 0.0013 18.8 0.0 0.0045 17.0 0.0 1.9 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_4 PF13579.6 gi|289583075|ref|YP_003481541.1| - 0.0021 18.5 3.1 0.0089 16.5 0.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|289583075|ref|YP_003481541.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Pec_lyase PF09492.10 gi|289583076|ref|YP_003481542.1| - 7.1e-05 22.3 0.1 0.00019 20.9 0.1 1.7 1 1 1 2 2 2 1 Pectic acid lyase Glyco_hydro_76 PF03663.14 gi|289583076|ref|YP_003481542.1| - 0.00022 20.9 1.5 0.029 13.9 0.1 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|289583076|ref|YP_003481542.1| - 0.0037 15.9 0.1 1.2 7.7 0.0 2.4 2 0 0 2 2 2 2 Lanthionine synthetase C-like protein Glyco_hydro_88 PF07470.13 gi|289583076|ref|YP_003481542.1| - 0.23 10.5 3.1 1.2 8.2 3.1 2.1 1 1 0 1 1 1 0 Glycosyl Hydrolase Family 88 Glycos_transf_1 PF00534.20 gi|289583077|ref|YP_003481543.1| - 3.2e-35 121.2 0.0 5e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289583077|ref|YP_003481543.1| - 4.4e-26 91.9 0.0 9.5e-26 90.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|289583077|ref|YP_003481543.1| - 4e-07 30.3 0.0 1.4e-06 28.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|289583077|ref|YP_003481543.1| - 1.9e-06 28.4 5.1 1.9e-06 28.4 5.1 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|289583077|ref|YP_003481543.1| - 1.2e-05 25.4 0.3 2.4e-05 24.4 0.3 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Acetyltransf_6 PF13480.7 gi|289583078|ref|YP_003481544.1| - 6.5e-23 81.5 0.5 4.2e-22 78.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF3784 PF12650.7 gi|289583079|ref|YP_003481545.1| - 0.0017 18.5 2.4 0.0028 17.8 0.7 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF3784) CDP-OH_P_tran_2 PF08009.11 gi|289583079|ref|YP_003481545.1| - 0.03 14.2 6.6 0.03 14.2 6.6 2.9 3 2 0 3 3 3 0 CDP-alcohol phosphatidyltransferase 2 SdpI PF13630.6 gi|289583079|ref|YP_003481545.1| - 0.19 11.9 4.5 1.3 9.2 0.4 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family EpuA PF11772.8 gi|289583079|ref|YP_003481545.1| - 0.27 10.9 4.9 0.96 9.2 4.9 1.9 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta FA_desaturase PF00487.24 gi|289583079|ref|YP_003481545.1| - 2.2 8.1 8.8 5.3 6.8 6.6 1.8 1 1 1 2 2 2 0 Fatty acid desaturase DUF4131 PF13567.6 gi|289583079|ref|YP_003481545.1| - 2.7 7.6 6.2 2 8.1 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ATPgrasp_Ter PF15632.6 gi|289583080|ref|YP_003481546.1| - 6.3e-08 32.4 0.0 1.1e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_carb_N PF00289.22 gi|289583080|ref|YP_003481546.1| - 0.0073 16.8 0.1 0.013 16.0 0.1 1.4 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain CPSase_L_D2 PF02786.17 gi|289583080|ref|YP_003481546.1| - 0.019 14.5 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|289583080|ref|YP_003481546.1| - 0.024 14.7 0.0 0.091 12.8 0.0 2.0 3 0 0 3 3 3 0 ATP-grasp domain ATP-grasp PF02222.22 gi|289583080|ref|YP_003481546.1| - 0.084 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain DUF4957 PF16318.5 gi|289583081|ref|YP_003481547.1| - 0.035 14.0 0.3 7.2 6.5 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4957) NOA36 PF06524.12 gi|289583082|ref|YP_003481548.1| - 0.32 10.3 12.7 0.31 10.3 12.7 1.1 1 0 0 1 1 1 0 NOA36 protein PPP4R2 PF09184.11 gi|289583082|ref|YP_003481548.1| - 0.69 9.5 12.4 0.75 9.3 12.4 1.0 1 0 0 1 1 1 0 PPP4R2 Astro_capsid_p PF12226.8 gi|289583082|ref|YP_003481548.1| - 0.73 8.9 10.6 0.78 8.8 10.6 1.0 1 0 0 1 1 1 0 Turkey astrovirus capsid protein DUF2457 PF10446.9 gi|289583082|ref|YP_003481548.1| - 3.6 6.6 18.2 3.5 6.7 18.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Nop14 PF04147.12 gi|289583082|ref|YP_003481548.1| - 6.8 4.8 17.0 6.8 4.8 17.0 1.0 1 0 0 1 1 1 0 Nop14-like family Polysacc_synt PF01943.17 gi|289583083|ref|YP_003481549.1| - 2.3e-25 89.5 14.8 2.3e-25 89.5 14.8 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|289583083|ref|YP_003481549.1| - 3.2e-23 82.4 5.7 3.2e-23 82.4 5.7 2.2 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|289583083|ref|YP_003481549.1| - 8.5e-23 81.0 37.8 2.8e-21 76.1 18.5 3.9 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|289583083|ref|YP_003481549.1| - 6.9e-12 44.7 23.0 1.2e-11 44.0 23.0 1.3 1 0 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|289583083|ref|YP_003481549.1| - 2.1e-09 37.2 0.7 2.1e-09 37.2 0.7 4.0 3 2 0 4 4 4 2 MatE GFO_IDH_MocA PF01408.22 gi|289583084|ref|YP_003481550.1| - 1.3e-21 77.7 0.0 2e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|289583084|ref|YP_003481550.1| - 0.11 13.1 0.1 1.1 10.0 0.0 2.2 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain OppC_N PF12911.7 gi|289583085|ref|YP_003481551.1| - 0.4 10.7 0.1 0.4 10.7 0.1 5.8 5 1 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C DUF1616 PF07760.11 gi|289583087|ref|YP_003481553.1| - 1.8e-87 293.4 1.8 2.2e-87 293.2 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) PKD_3 PF16820.5 gi|289583087|ref|YP_003481553.1| - 0.035 13.8 0.4 0.15 11.8 0.0 2.2 3 0 0 3 3 3 0 PKD-like domain Nop14 PF04147.12 gi|289583087|ref|YP_003481553.1| - 0.051 11.8 23.4 0.061 11.5 23.4 1.1 1 0 0 1 1 1 0 Nop14-like family VIT1 PF01988.19 gi|289583087|ref|YP_003481553.1| - 0.07 13.0 2.5 0.2 11.5 2.5 1.9 1 0 0 1 1 1 0 VIT family SAPS PF04499.15 gi|289583087|ref|YP_003481553.1| - 0.88 8.3 3.2 0.91 8.2 3.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein TFB6 PF17110.5 gi|289583087|ref|YP_003481553.1| - 1.7 8.4 8.1 3.2 7.5 8.1 1.6 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH DUF2076 PF09849.9 gi|289583087|ref|YP_003481553.1| - 6.2 6.8 17.3 9.2 6.2 17.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Acetyltransf_6 PF13480.7 gi|289583088|ref|YP_003481554.1| - 1.2e-21 77.4 0.1 2.5e-21 76.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|289583088|ref|YP_003481554.1| - 0.0016 17.4 0.0 0.97 8.2 0.0 2.2 2 0 0 2 2 2 2 FemAB family Phosphodiest PF01663.22 gi|289583089|ref|YP_003481555.1| - 8.1e-39 134.2 0.0 7.1e-37 127.8 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Phage_int_SAM_1 PF02899.17 gi|289583090|ref|YP_003481556.1| - 0.001 19.3 0.3 0.001 19.3 0.3 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|289583090|ref|YP_003481556.1| - 0.15 12.4 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|289583090|ref|YP_003481556.1| - 0.16 12.4 0.0 0.36 11.3 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Proton_antipo_M PF00361.20 gi|289583091|ref|YP_003481557.1| - 1.8e-38 132.5 18.5 1.8e-38 132.5 18.5 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|289583092|ref|YP_003481558.1| - 4.4e-49 167.3 20.2 4.4e-49 167.3 20.2 2.8 3 1 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|289583092|ref|YP_003481558.1| - 3.6e-05 23.7 0.4 3.6e-05 23.7 0.4 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SelP_N PF04592.14 gi|289583092|ref|YP_003481558.1| - 0.26 10.6 3.5 1.2 8.5 2.0 2.0 2 0 0 2 2 2 0 Selenoprotein P, N terminal region Proton_antipo_M PF00361.20 gi|289583093|ref|YP_003481559.1| - 4.8e-61 206.5 19.6 7.5e-61 205.9 19.6 1.3 1 0 0 1 1 1 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|289583093|ref|YP_003481559.1| - 0.0049 16.3 8.0 0.0049 16.3 8.0 2.6 2 0 0 2 2 2 2 NADH dehydrogenase I, subunit N related protein DUF3098 PF11297.8 gi|289583093|ref|YP_003481559.1| - 9 6.0 10.5 4.9 6.8 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3098) Oxidored_q2 PF00420.24 gi|289583094|ref|YP_003481560.1| - 2.5e-27 94.5 3.9 3.2e-27 94.2 3.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CD47 PF04549.14 gi|289583094|ref|YP_003481560.1| - 0.32 11.2 8.0 0.085 13.1 2.1 2.0 2 0 0 2 2 2 0 CD47 transmembrane region DUF5134 PF17197.4 gi|289583094|ref|YP_003481560.1| - 0.37 10.7 6.6 2.4 8.1 6.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) DUF2892 PF11127.8 gi|289583094|ref|YP_003481560.1| - 0.83 9.7 8.2 0.41 10.7 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Oxidored_q4 PF00507.19 gi|289583094|ref|YP_003481560.1| - 4.8 7.4 8.5 0.74 10.0 4.8 1.4 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MnhB PF04039.13 gi|289583095|ref|YP_003481561.1| - 2.3e-21 76.4 15.1 2.8e-21 76.1 15.1 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF998 PF06197.13 gi|289583095|ref|YP_003481561.1| - 3.4e-05 23.5 11.7 6.1e-05 22.7 11.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF998) Phage_holin_3_6 PF07332.11 gi|289583095|ref|YP_003481561.1| - 1.6 8.8 13.3 2.2 8.3 7.9 2.2 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4013 PF13197.6 gi|289583095|ref|YP_003481561.1| - 1.7 8.4 14.8 5.2 6.9 14.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4013) DUF202 PF02656.15 gi|289583095|ref|YP_003481561.1| - 6.4 7.3 9.8 87 3.7 6.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF202) DUF4040 PF13244.6 gi|289583096|ref|YP_003481562.1| - 1.2e-19 70.2 15.3 1.2e-19 70.2 15.3 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|289583096|ref|YP_003481562.1| - 0.0095 15.7 10.0 0.0071 16.1 8.6 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PhaG_MnhG_YufB PF03334.14 gi|289583097|ref|YP_003481563.1| - 3.4e-24 84.9 10.1 4.1e-24 84.6 10.1 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|289583098|ref|YP_003481564.1| - 1.9e-19 69.8 3.4 1.9e-19 69.8 3.4 2.1 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|289583099|ref|YP_003481565.1| - 1.6e-31 109.0 1.8 2.5e-31 108.4 1.8 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Acyl-CoA_dh_1 PF00441.24 gi|289583100|ref|YP_003481566.1| - 4e-36 124.5 2.2 7e-36 123.7 2.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289583100|ref|YP_003481566.1| - 2.7e-21 76.3 0.1 5.3e-21 75.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289583100|ref|YP_003481566.1| - 2.6e-20 73.1 6.6 4.9e-20 72.2 6.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289583100|ref|YP_003481566.1| - 3.5e-20 72.0 0.0 6.3e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain N2227 PF07942.12 gi|289583100|ref|YP_003481566.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein MaoC_dehydratas PF01575.19 gi|289583101|ref|YP_003481567.1| - 4.2e-20 71.5 0.4 5.8e-20 71.1 0.4 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|289583101|ref|YP_003481567.1| - 7.2e-07 29.4 0.1 1e-06 28.9 0.1 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase CoA_transf_3 PF02515.17 gi|289583102|ref|YP_003481568.1| - 2.1e-109 366.1 0.0 2.3e-109 365.9 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III MmgE_PrpD PF03972.14 gi|289583103|ref|YP_003481569.1| - 8.3e-111 370.6 14.8 1e-110 370.4 14.8 1.0 1 0 0 1 1 1 1 MmgE/PrpD family DHO_dh PF01180.21 gi|289583104|ref|YP_003481570.1| - 5.2e-84 282.0 0.0 5.9e-84 281.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|289583104|ref|YP_003481570.1| - 0.0073 15.7 0.1 0.012 15.0 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Glu-tRNAGln PF02686.15 gi|289583104|ref|YP_003481570.1| - 0.039 14.3 0.0 0.73 10.2 0.0 2.5 2 0 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit AP_endonuc_2 PF01261.24 gi|289583104|ref|YP_003481570.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel ThiI PF02568.14 gi|289583106|ref|YP_003481572.1| - 3.3e-43 147.6 0.0 8.8e-43 146.2 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|289583106|ref|YP_003481572.1| - 7.6e-16 58.5 0.0 1.5e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|289583106|ref|YP_003481572.1| - 1.6e-05 24.5 0.0 0.13 11.7 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|289583106|ref|YP_003481572.1| - 0.0042 15.9 0.0 0.006 15.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase AdoMet_Synthase PF01941.19 gi|289583107|ref|YP_003481573.1| - 5.1e-173 575.4 7.0 5.8e-173 575.2 7.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|289583107|ref|YP_003481573.1| - 0.0077 16.9 0.2 0.078 13.7 0.0 2.6 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain DUF961 PF06125.11 gi|289583107|ref|YP_003481573.1| - 0.11 12.8 0.8 3.5 8.0 0.3 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF961) CYTH PF01928.21 gi|289583108|ref|YP_003481574.1| - 4.1e-37 127.8 6.0 1.6e-36 125.9 2.7 2.0 1 1 1 2 2 2 2 CYTH domain FKBP_C PF00254.28 gi|289583109|ref|YP_003481575.1| - 5.1e-08 33.1 0.1 1.4e-07 31.7 0.1 1.8 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|289583109|ref|YP_003481575.1| - 0.11 12.2 0.2 0.24 11.1 0.2 1.6 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) ATPase PF06745.13 gi|289583110|ref|YP_003481576.1| - 8.2e-07 28.6 0.0 0.00012 21.5 0.0 2.2 1 1 0 2 2 2 2 KaiC OTCace_N PF02729.21 gi|289583111|ref|YP_003481577.1| - 4.2e-44 150.1 0.0 2.2e-43 147.8 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|289583111|ref|YP_003481577.1| - 6.4e-29 101.0 0.0 9.4e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|289583112|ref|YP_003481578.1| - 1.2e-32 112.0 0.4 1.6e-32 111.6 0.4 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|289583112|ref|YP_003481578.1| - 1.4e-12 47.3 0.1 2.6e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Brr6_like_C_C PF10104.9 gi|289583113|ref|YP_003481579.1| - 0.064 13.0 0.1 0.064 13.0 0.1 1.0 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain DUF4481 PF14800.6 gi|289583113|ref|YP_003481579.1| - 0.17 11.3 0.3 0.17 11.3 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) ECH_1 PF00378.20 gi|289583116|ref|YP_003481582.1| - 8.9e-53 179.2 0.0 1e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289583116|ref|YP_003481582.1| - 7.3e-28 98.0 0.1 1.2e-27 97.3 0.1 1.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF550 PF04447.12 gi|289583116|ref|YP_003481582.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF550) HTH_10 PF04967.12 gi|289583117|ref|YP_003481583.1| - 8.6e-18 63.9 0.1 1.3e-17 63.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289583117|ref|YP_003481583.1| - 4.6e-10 39.6 0.2 9.2e-10 38.6 0.2 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|289583117|ref|YP_003481583.1| - 0.0018 18.2 0.0 0.0038 17.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|289583117|ref|YP_003481583.1| - 0.0049 16.4 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|289583117|ref|YP_003481583.1| - 0.012 15.8 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|289583117|ref|YP_003481583.1| - 0.066 12.7 0.1 0.14 11.7 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|289583117|ref|YP_003481583.1| - 0.08 12.8 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_psq PF05225.16 gi|289583117|ref|YP_003481583.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Beta_helix PF13229.6 gi|289583118|ref|YP_003481584.1| - 9.8e-09 35.2 4.7 0.018 14.9 0.2 3.7 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|289583118|ref|YP_003481584.1| - 3.4e-05 23.8 0.9 0.096 12.5 0.0 3.6 2 2 0 2 2 2 2 Pectate lyase superfamily protein DUF4957 PF16318.5 gi|289583118|ref|YP_003481584.1| - 0.0087 16.0 0.0 2 8.3 0.0 2.8 2 1 1 3 3 3 2 Domain of unknown function (DUF4957) TrkA_N PF02254.18 gi|289583119|ref|YP_003481585.1| - 2e-20 73.2 1.7 4.8e-20 72.0 1.1 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.20 gi|289583119|ref|YP_003481585.1| - 6.1e-10 39.2 2.1 6.1e-09 36.0 0.3 2.4 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|289583119|ref|YP_003481585.1| - 8.3e-09 35.9 0.2 3.6e-08 33.9 0.1 2.2 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|289583119|ref|YP_003481585.1| - 3.9e-07 30.4 0.8 1.3e-06 28.7 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|289583119|ref|YP_003481585.1| - 1.1e-06 28.3 0.0 3.3e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|289583119|ref|YP_003481585.1| - 9.8e-06 26.0 0.3 3.5e-05 24.2 0.3 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding DHHA1 PF02272.19 gi|289583119|ref|YP_003481585.1| - 2.2e-05 24.9 0.4 9.9e-05 22.8 0.0 2.3 2 1 1 3 3 2 1 DHHA1 domain UDPG_MGDP_dh_N PF03721.14 gi|289583119|ref|YP_003481585.1| - 8.5e-05 22.2 0.0 0.0002 21.0 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|289583119|ref|YP_003481585.1| - 8.7e-05 22.7 0.0 0.00018 21.7 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|289583119|ref|YP_003481585.1| - 9e-05 22.6 0.1 0.00026 21.1 0.0 1.7 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|289583119|ref|YP_003481585.1| - 0.00016 21.2 0.1 0.00036 20.1 0.1 1.6 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family IlvN PF07991.12 gi|289583119|ref|YP_003481585.1| - 0.00024 20.7 0.2 0.00046 19.8 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_3 PF01494.19 gi|289583119|ref|YP_003481585.1| - 0.00066 19.0 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|289583119|ref|YP_003481585.1| - 0.0029 17.5 0.0 0.0089 15.9 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|289583119|ref|YP_003481585.1| - 0.0031 16.9 0.0 0.0094 15.3 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|289583119|ref|YP_003481585.1| - 0.004 16.6 0.7 0.021 14.3 0.0 2.5 3 1 0 3 3 3 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|289583119|ref|YP_003481585.1| - 0.0044 16.4 0.7 0.0098 15.2 0.2 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|289583119|ref|YP_003481585.1| - 0.0059 16.6 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|289583119|ref|YP_003481585.1| - 0.0099 15.5 2.1 0.042 13.4 0.1 2.6 3 0 0 3 3 3 1 Enoyl-(Acyl carrier protein) reductase XdhC_C PF13478.6 gi|289583119|ref|YP_003481585.1| - 0.029 14.9 0.5 0.17 12.4 0.1 2.4 3 0 0 3 3 3 0 XdhC Rossmann domain DFP PF04127.15 gi|289583119|ref|YP_003481585.1| - 0.033 14.0 0.1 0.072 12.9 0.1 1.5 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DAO PF01266.24 gi|289583119|ref|YP_003481585.1| - 0.049 13.2 0.2 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase CoA_binding_2 PF13380.6 gi|289583119|ref|YP_003481585.1| - 0.059 13.9 0.8 1.3 9.5 0.3 3.1 2 1 0 2 2 2 0 CoA binding domain Pyr_redox_3 PF13738.6 gi|289583119|ref|YP_003481585.1| - 0.15 11.3 0.1 0.25 10.5 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_3 PF03447.16 gi|289583119|ref|YP_003481585.1| - 0.28 11.8 1.9 0.86 10.3 1.1 2.3 1 1 1 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PRC PF05239.16 gi|289583120|ref|YP_003481586.1| - 8.3e-13 48.2 0.6 1e-12 47.9 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain RcnB PF11776.8 gi|289583120|ref|YP_003481586.1| - 0.054 13.6 0.4 0.09 12.8 0.4 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator DUF2171 PF09939.9 gi|289583120|ref|YP_003481586.1| - 0.067 13.5 0.2 0.3 11.4 0.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) MarR_2 PF12802.7 gi|289583121|ref|YP_003481587.1| - 1.5e-05 24.8 0.5 3.1e-05 23.8 0.5 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|289583121|ref|YP_003481587.1| - 0.00011 22.0 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289583121|ref|YP_003481587.1| - 0.0005 20.1 0.6 0.0014 18.6 0.6 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|289583121|ref|YP_003481587.1| - 0.00051 20.2 0.1 0.0014 18.7 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|289583121|ref|YP_003481587.1| - 0.0012 18.8 0.1 0.0024 17.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|289583121|ref|YP_003481587.1| - 0.0017 18.0 0.1 0.0056 16.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|289583121|ref|YP_003481587.1| - 0.0024 17.8 0.1 0.0053 16.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|289583121|ref|YP_003481587.1| - 0.0031 17.4 0.0 0.006 16.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|289583121|ref|YP_003481587.1| - 0.015 15.1 0.4 0.035 13.9 0.4 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA_26 PF13500.6 gi|289583122|ref|YP_003481588.1| - 5e-41 140.7 0.0 8.2e-41 140.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|289583122|ref|YP_003481588.1| - 4.3e-28 97.2 0.3 1.4e-27 95.6 0.0 2.0 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|289583122|ref|YP_003481588.1| - 0.00018 21.6 0.0 0.00039 20.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP-grasp_5 PF13549.6 gi|289583123|ref|YP_003481589.1| - 8.9e-75 251.0 0.2 1.9e-74 249.9 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|289583123|ref|YP_003481589.1| - 1.3e-51 174.0 1.0 3e-51 172.8 0.2 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|289583123|ref|YP_003481589.1| - 9.2e-23 81.0 0.5 5.6e-22 78.4 0.3 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|289583123|ref|YP_003481589.1| - 4.2e-09 37.0 1.6 7.3e-09 36.2 0.5 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|289583123|ref|YP_003481589.1| - 0.00053 19.6 0.0 0.0029 17.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ABC-3 PF00950.17 gi|289583124|ref|YP_003481590.1| - 1.9e-52 178.4 37.1 1.9e-52 178.4 37.1 1.3 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.18 gi|289583124|ref|YP_003481590.1| - 3.3e-05 23.1 39.0 3.3e-05 23.1 39.0 2.4 1 1 1 3 3 3 1 FecCD transport family DUF1189 PF06691.11 gi|289583124|ref|YP_003481590.1| - 9.5 5.7 9.9 18 4.8 9.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) ABC_tran PF00005.27 gi|289583125|ref|YP_003481591.1| - 4.1e-31 108.3 0.0 6e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289583125|ref|YP_003481591.1| - 4.8e-11 43.0 0.2 0.00013 21.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289583125|ref|YP_003481591.1| - 8.5e-05 22.1 0.1 0.00032 20.2 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289583125|ref|YP_003481591.1| - 0.00043 20.0 0.2 0.00083 19.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289583125|ref|YP_003481591.1| - 0.00053 20.4 0.4 0.001 19.5 0.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain Peripla_BP_4 PF13407.6 gi|289583125|ref|YP_003481591.1| - 0.0019 17.8 0.1 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_22 PF13401.6 gi|289583125|ref|YP_003481591.1| - 0.0037 17.5 0.5 0.038 14.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289583125|ref|YP_003481591.1| - 0.0039 17.0 0.0 0.0078 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|289583125|ref|YP_003481591.1| - 0.0092 15.9 0.0 0.038 13.9 0.0 1.8 1 1 1 2 2 2 1 NTPase AAA_23 PF13476.6 gi|289583125|ref|YP_003481591.1| - 0.0095 16.4 0.1 0.012 16.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|289583125|ref|YP_003481591.1| - 0.018 15.3 0.3 0.36 11.1 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|289583125|ref|YP_003481591.1| - 0.029 14.6 0.1 0.1 12.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|289583125|ref|YP_003481591.1| - 0.033 14.1 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|289583125|ref|YP_003481591.1| - 0.079 12.0 0.0 0.16 11.0 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|289583125|ref|YP_003481591.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|289583125|ref|YP_003481591.1| - 0.17 11.5 0.2 0.42 10.2 0.2 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|289583125|ref|YP_003481591.1| - 0.17 11.4 3.8 1.6 8.2 0.1 2.8 1 1 2 3 3 3 0 AAA domain ZnuA PF01297.17 gi|289583126|ref|YP_003481592.1| - 2.3e-43 148.5 0.5 2.7e-43 148.2 0.5 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic TAT_signal PF10518.9 gi|289583126|ref|YP_003481592.1| - 0.00035 20.3 6.5 0.00058 19.6 6.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence tRNA_edit PF04073.15 gi|289583128|ref|YP_003481594.1| - 5.1e-33 113.8 0.1 6.1e-33 113.5 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GDP_Man_Dehyd PF16363.5 gi|289583128|ref|YP_003481594.1| - 0.14 11.5 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Virul_fac_BrkB PF03631.15 gi|289583130|ref|YP_003481596.1| - 3.8e-45 154.5 22.3 4.7e-45 154.2 22.3 1.1 1 0 0 1 1 1 1 Virulence factor BrkB bZIP_1 PF00170.21 gi|289583130|ref|YP_003481596.1| - 0.0011 19.0 7.5 0.0011 19.0 7.5 2.0 1 1 1 2 2 2 1 bZIP transcription factor GAS PF13851.6 gi|289583130|ref|YP_003481596.1| - 0.0013 18.1 5.6 0.0018 17.7 5.6 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding FPP PF05911.11 gi|289583130|ref|YP_003481596.1| - 0.0013 17.0 2.9 0.0017 16.7 2.9 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil APG6_N PF17675.1 gi|289583130|ref|YP_003481596.1| - 0.0025 18.3 10.6 0.004 17.7 10.6 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region UPF0242 PF06785.11 gi|289583130|ref|YP_003481596.1| - 0.0027 17.8 0.9 0.0027 17.8 0.9 1.8 2 1 0 2 2 1 1 Uncharacterised protein family (UPF0242) N-terminus KASH_CCD PF14662.6 gi|289583130|ref|YP_003481596.1| - 0.0029 17.5 3.8 0.0043 16.9 3.8 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH CENP-F_leu_zip PF10473.9 gi|289583130|ref|YP_003481596.1| - 0.0058 16.7 5.8 0.0088 16.1 5.8 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|289583130|ref|YP_003481596.1| - 0.014 15.5 9.0 0.021 14.9 9.0 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding ABC_tran_CTD PF16326.5 gi|289583130|ref|YP_003481596.1| - 0.014 15.6 4.1 0.014 15.6 4.1 2.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain ATG16 PF08614.11 gi|289583130|ref|YP_003481596.1| - 0.014 15.6 8.2 0.02 15.2 8.2 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) HAUS-augmin3 PF14932.6 gi|289583130|ref|YP_003481596.1| - 0.015 14.9 4.0 0.021 14.4 4.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 HIP1_clath_bdg PF16515.5 gi|289583130|ref|YP_003481596.1| - 0.018 15.7 4.8 0.032 14.8 4.8 1.5 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Macoilin PF09726.9 gi|289583130|ref|YP_003481596.1| - 0.021 13.4 2.9 0.027 13.1 2.9 1.1 1 0 0 1 1 1 0 Macoilin family DUF3450 PF11932.8 gi|289583130|ref|YP_003481596.1| - 0.026 13.9 5.3 0.04 13.2 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Mod_r PF07200.13 gi|289583130|ref|YP_003481596.1| - 0.034 14.3 5.7 0.053 13.6 5.7 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein HAUS6_N PF14661.6 gi|289583130|ref|YP_003481596.1| - 0.037 13.6 1.4 0.051 13.1 1.4 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Taxilin PF09728.9 gi|289583130|ref|YP_003481596.1| - 0.082 12.1 4.5 0.11 11.7 4.5 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein JIP_LZII PF16471.5 gi|289583130|ref|YP_003481596.1| - 0.18 12.0 7.8 0.079 13.1 2.0 2.2 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II ZapB PF06005.12 gi|289583130|ref|YP_003481596.1| - 0.21 12.0 11.9 40 4.7 11.9 2.3 1 1 0 1 1 1 0 Cell division protein ZapB Spc7 PF08317.11 gi|289583130|ref|YP_003481596.1| - 0.23 10.3 4.8 0.33 9.8 4.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|289583130|ref|YP_003481596.1| - 0.37 11.2 3.9 0.84 10.1 0.3 2.5 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) DUF724 PF05266.14 gi|289583130|ref|YP_003481596.1| - 0.41 10.4 2.1 0.58 10.0 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TMF_TATA_bd PF12325.8 gi|289583130|ref|YP_003481596.1| - 0.5 10.6 9.2 1 9.6 9.2 1.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding GBP_C PF02841.14 gi|289583130|ref|YP_003481596.1| - 0.53 9.6 4.9 0.77 9.1 4.9 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Atg14 PF10186.9 gi|289583130|ref|YP_003481596.1| - 0.56 9.2 4.0 0.76 8.8 4.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PRKG1_interact PF15898.5 gi|289583130|ref|YP_003481596.1| - 0.66 10.9 9.9 1.3 10.0 9.7 1.4 1 1 0 1 1 1 0 cGMP-dependent protein kinase interacting domain bZIP_2 PF07716.15 gi|289583130|ref|YP_003481596.1| - 0.91 9.6 14.4 2.1 8.5 7.0 2.3 1 1 1 2 2 2 0 Basic region leucine zipper TPD52 PF04201.15 gi|289583130|ref|YP_003481596.1| - 1.4 8.5 5.8 1.6 8.3 3.7 1.8 1 1 1 2 2 2 0 Tumour protein D52 family Wtap PF17098.5 gi|289583130|ref|YP_003481596.1| - 1.6 8.6 7.6 2 8.3 6.7 1.4 1 1 0 1 1 1 0 WTAP/Mum2p family DUF3552 PF12072.8 gi|289583130|ref|YP_003481596.1| - 2.8 7.3 9.5 4.8 6.5 9.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Prefoldin_2 PF01920.20 gi|289583130|ref|YP_003481596.1| - 3.1 7.8 6.0 4.7 7.2 0.5 2.3 1 1 1 2 2 2 0 Prefoldin subunit Nnf1 PF03980.14 gi|289583130|ref|YP_003481596.1| - 3.6 8.0 10.9 2.4 8.6 3.9 2.2 1 1 1 2 2 2 0 Nnf1 DivIC PF04977.15 gi|289583130|ref|YP_003481596.1| - 4.1 7.2 12.8 2 8.2 2.7 2.9 2 1 1 3 3 3 0 Septum formation initiator Spc24 PF08286.11 gi|289583130|ref|YP_003481596.1| - 4.2 7.7 7.3 5.8 7.2 0.9 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 PfkB PF00294.24 gi|289583131|ref|YP_003481597.1| - 5.5e-61 206.5 0.3 8e-60 202.7 0.3 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase eIF-5a PF01287.20 gi|289583132|ref|YP_003481598.1| - 0.12 12.5 1.9 2.4 8.3 0.3 2.8 2 0 0 2 2 2 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold DUF4956 PF16316.5 gi|289583132|ref|YP_003481598.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) Tir_receptor_C PF07489.11 gi|289583133|ref|YP_003481599.1| - 0.2 11.6 0.4 0.34 10.9 0.4 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus Aldedh PF00171.22 gi|289583134|ref|YP_003481600.1| - 5.6e-138 460.3 0.0 6.5e-138 460.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|289583134|ref|YP_003481600.1| - 0.006 16.1 0.0 0.047 13.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) Zeta_toxin PF06414.12 gi|289583134|ref|YP_003481600.1| - 0.12 11.7 0.0 3.5 6.9 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin Ferritin PF00210.24 gi|289583135|ref|YP_003481601.1| - 3e-32 111.5 2.6 3.9e-32 111.1 2.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain ACP_PD PF04336.12 gi|289583135|ref|YP_003481601.1| - 0.091 13.2 0.3 9.5 6.7 0.0 2.6 2 1 0 2 2 2 0 Acyl carrier protein phosphodiesterase Ribonuc_L-PSP PF01042.21 gi|289583136|ref|YP_003481602.1| - 4.1e-05 23.6 0.0 4.2e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Macro PF01661.21 gi|289583138|ref|YP_003481604.1| - 1.9e-28 98.9 0.1 3e-28 98.2 0.0 1.4 2 0 0 2 2 2 1 Macro domain AIRS_C PF02769.22 gi|289583139|ref|YP_003481605.1| - 1.7e-22 80.2 0.1 3.2e-22 79.3 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|289583139|ref|YP_003481605.1| - 5.5e-12 46.2 2.6 8.1e-12 45.6 2.0 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.22 gi|289583140|ref|YP_003481606.1| - 0.00028 20.3 16.3 0.007 15.7 0.8 3.4 1 1 1 2 2 2 2 Peptidase family M50 DUF3021 PF11457.8 gi|289583140|ref|YP_003481606.1| - 2.2 8.6 12.8 1.2 9.5 9.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) TraB PF01963.17 gi|289583141|ref|YP_003481607.1| - 3.6e-28 99.2 0.0 7.6e-17 62.1 0.0 2.2 2 0 0 2 2 2 2 TraB family DUF2371 PF10177.9 gi|289583141|ref|YP_003481607.1| - 0.013 15.7 0.1 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) ISK_Channel PF02060.15 gi|289583141|ref|YP_003481607.1| - 0.02 14.6 0.6 0.041 13.6 0.2 1.7 2 0 0 2 2 2 0 Slow voltage-gated potassium channel DUF2207 PF09972.9 gi|289583141|ref|YP_003481607.1| - 6 5.5 13.5 0.23 10.2 1.5 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) 4HBT PF03061.22 gi|289583142|ref|YP_003481608.1| - 2.2e-14 53.5 0.2 3.1e-14 53.1 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Peptidase_S66 PF02016.15 gi|289583143|ref|YP_003481609.1| - 2.1e-26 92.4 0.0 2.9e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|289583143|ref|YP_003481609.1| - 8.2e-24 84.5 0.0 1.3e-23 83.9 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Hydrolase_like PF13242.6 gi|289583144|ref|YP_003481610.1| - 2.5e-22 78.7 1.0 1.2e-21 76.6 0.2 2.4 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|289583144|ref|YP_003481610.1| - 8.7e-20 70.7 0.0 1.8e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|289583144|ref|YP_003481610.1| - 3.1e-06 27.4 0.1 1.8e-05 24.9 0.0 2.2 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|289583144|ref|YP_003481610.1| - 6.9e-06 26.5 0.1 0.0052 17.1 0.0 2.9 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|289583144|ref|YP_003481610.1| - 0.011 15.4 0.0 0.026 14.1 0.1 1.6 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase DUF4350 PF14258.6 gi|289583144|ref|YP_003481610.1| - 0.056 13.9 0.1 4.3 7.8 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) SHOCT PF09851.9 gi|289583145|ref|YP_003481611.1| - 1.1e-07 31.4 0.0 2.2e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|289583145|ref|YP_003481611.1| - 0.003 17.6 6.5 0.011 15.8 6.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) UPF0542 PF15086.6 gi|289583145|ref|YP_003481611.1| - 0.0048 16.8 0.4 0.0099 15.8 0.1 1.6 2 0 0 2 2 1 1 Uncharacterised protein family UPF0542 GvpG PF05120.12 gi|289583145|ref|YP_003481611.1| - 0.0049 16.9 3.5 0.0068 16.4 3.2 1.4 1 1 0 1 1 1 1 Gas vesicle protein G FHIPEP PF00771.20 gi|289583145|ref|YP_003481611.1| - 0.0072 14.9 0.2 0.0085 14.6 0.2 1.0 1 0 0 1 1 1 1 FHIPEP family Kei1 PF08552.11 gi|289583145|ref|YP_003481611.1| - 0.011 15.7 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 Keratin_assoc PF09775.9 gi|289583145|ref|YP_003481611.1| - 0.013 15.1 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 DUF2244 PF10003.9 gi|289583145|ref|YP_003481611.1| - 0.014 15.1 0.1 0.017 14.8 0.1 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) tRNA_anti-like PF12869.7 gi|289583145|ref|YP_003481611.1| - 0.015 14.9 0.3 0.019 14.6 0.3 1.3 1 0 0 1 1 1 0 tRNA_anti-like SpoIIIAH PF12685.7 gi|289583145|ref|YP_003481611.1| - 0.018 14.9 2.5 0.037 13.9 2.5 1.5 1 1 0 1 1 1 0 SpoIIIAH-like protein OSTbeta PF15048.6 gi|289583145|ref|YP_003481611.1| - 0.018 15.2 0.1 0.026 14.6 0.1 1.4 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein ABC_membrane PF00664.23 gi|289583145|ref|YP_003481611.1| - 0.028 14.1 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region CBP_BcsG PF11658.8 gi|289583145|ref|YP_003481611.1| - 0.038 12.4 0.2 0.042 12.2 0.2 1.0 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG DUF5313 PF17240.2 gi|289583145|ref|YP_003481611.1| - 0.048 14.1 0.5 0.072 13.5 0.2 1.4 1 1 1 2 2 2 0 Family of unknown function (DUF5313) DUF4381 PF14316.6 gi|289583145|ref|YP_003481611.1| - 0.056 13.7 1.2 0.084 13.1 1.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) TMEM51 PF15345.6 gi|289583145|ref|YP_003481611.1| - 0.065 13.1 0.3 0.084 12.7 0.3 1.2 1 0 0 1 1 1 0 Transmembrane protein 51 Holin_BhlA PF10960.8 gi|289583145|ref|YP_003481611.1| - 0.087 12.8 1.1 0.12 12.3 1.0 1.5 1 1 0 1 1 1 0 BhlA holin family DUF3742 PF12553.8 gi|289583145|ref|YP_003481611.1| - 0.098 12.8 0.2 0.14 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) YajC PF02699.15 gi|289583145|ref|YP_003481611.1| - 0.16 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit zf-Di19 PF05605.12 gi|289583147|ref|YP_003481613.1| - 0.053 13.8 0.2 0.075 13.3 0.2 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding MFS_1 PF07690.16 gi|289583148|ref|YP_003481614.1| - 4.2e-45 154.2 76.5 3.4e-38 131.5 47.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|289583148|ref|YP_003481614.1| - 0.00012 21.1 6.0 0.00012 21.1 6.0 2.1 2 0 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|289583148|ref|YP_003481614.1| - 0.00043 19.2 16.3 0.0041 15.9 0.4 3.4 2 1 1 3 3 3 2 LacY proton/sugar symporter Zn-ribbon_8 PF09723.10 gi|289583149|ref|YP_003481615.1| - 0.0034 17.5 1.3 0.0046 17.0 1.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain NCD3G PF07562.14 gi|289583149|ref|YP_003481615.1| - 0.03 14.3 1.1 0.035 14.1 1.1 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR HypA PF01155.19 gi|289583149|ref|YP_003481615.1| - 0.038 14.0 0.6 0.042 13.9 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|289583149|ref|YP_003481615.1| - 1.4 8.8 7.7 25 4.9 7.7 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Cupin_2 PF07883.11 gi|289583150|ref|YP_003481616.1| - 1e-08 34.8 0.6 1.4e-08 34.3 0.6 1.2 1 0 0 1 1 1 1 Cupin domain FdtA PF05523.11 gi|289583150|ref|YP_003481616.1| - 1.3e-05 24.9 0.0 1.6e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal cNMP_binding PF00027.29 gi|289583150|ref|YP_003481616.1| - 5.4e-05 23.2 0.3 0.0002 21.4 0.3 1.8 1 1 0 1 1 1 1 Cyclic nucleotide-binding domain KduI PF04962.12 gi|289583150|ref|YP_003481616.1| - 0.00014 21.2 0.1 0.00017 21.0 0.1 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_3 PF05899.12 gi|289583150|ref|YP_003481616.1| - 0.00018 21.1 0.1 0.00025 20.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1971 PF09313.11 gi|289583150|ref|YP_003481616.1| - 0.0093 16.0 0.2 0.021 14.8 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1971) DUF1664 PF07889.12 gi|289583151|ref|YP_003481617.1| - 6e-13 48.9 52.1 5.2e-05 23.3 2.3 8.4 3 1 4 8 8 8 7 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|289583151|ref|YP_003481617.1| - 4.2e-10 39.8 61.0 0.014 15.4 5.5 8.4 1 1 6 7 7 7 5 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|289583151|ref|YP_003481617.1| - 4.4e-10 39.7 112.2 7.7e-06 25.9 37.4 5.7 1 1 4 5 5 5 4 Apolipoprotein A1/A4/E domain Spc7 PF08317.11 gi|289583151|ref|YP_003481617.1| - 5.6e-08 32.0 76.2 1.9e-05 23.7 15.0 5.3 1 1 4 5 5 5 5 Spc7 kinetochore protein DUF812 PF05667.11 gi|289583151|ref|YP_003481617.1| - 1.1e-05 24.5 7.2 1.1e-05 24.5 7.2 4.7 1 1 2 4 4 4 1 Protein of unknown function (DUF812) DUF16 PF01519.16 gi|289583151|ref|YP_003481617.1| - 1.7e-05 25.3 41.7 0.015 15.8 4.1 8.2 1 1 3 4 4 3 1 Protein of unknown function DUF16 DUF3584 PF12128.8 gi|289583151|ref|YP_003481617.1| - 5e-05 21.1 34.9 5e-05 21.1 34.9 3.7 1 1 3 4 4 4 3 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|289583151|ref|YP_003481617.1| - 6.1e-05 21.9 54.2 0.012 14.3 6.2 4.0 1 1 3 4 4 4 4 AAA domain AIP3 PF03915.13 gi|289583151|ref|YP_003481617.1| - 0.00015 21.0 20.8 0.00015 21.0 20.8 4.5 1 1 2 4 4 4 1 Actin interacting protein 3 Fib_alpha PF08702.10 gi|289583151|ref|YP_003481617.1| - 0.00028 21.1 34.6 0.0069 16.6 4.2 6.0 2 1 6 8 8 7 3 Fibrinogen alpha/beta chain family DUF3552 PF12072.8 gi|289583151|ref|YP_003481617.1| - 0.00083 18.8 6.6 0.00083 18.8 6.6 7.1 2 2 6 8 8 8 3 Domain of unknown function (DUF3552) NPV_P10 PF05531.12 gi|289583151|ref|YP_003481617.1| - 0.00084 19.8 76.0 0.6 10.6 4.5 11.1 2 1 5 7 7 6 4 Nucleopolyhedrovirus P10 protein Atg14 PF10186.9 gi|289583151|ref|YP_003481617.1| - 0.001 18.2 27.4 0.23 10.5 1.8 5.6 1 1 5 6 6 6 2 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|289583151|ref|YP_003481617.1| - 0.0018 16.6 10.2 0.0018 16.6 10.2 4.8 1 1 2 4 4 4 3 Septation ring formation regulator, EzrA DUF5082 PF16888.5 gi|289583151|ref|YP_003481617.1| - 0.0021 18.3 48.3 0.039 14.2 3.8 7.0 4 2 3 7 7 7 3 Domain of unknown function (DUF5082) Prominin PF05478.11 gi|289583151|ref|YP_003481617.1| - 0.0056 14.7 30.0 0.07 11.1 11.2 3.7 1 1 4 5 5 5 4 Prominin SlyX PF04102.12 gi|289583151|ref|YP_003481617.1| - 0.0082 16.7 8.4 0.0082 16.7 8.4 11.8 3 1 3 11 11 11 2 SlyX G6B PF15096.6 gi|289583151|ref|YP_003481617.1| - 0.023 14.5 0.0 0.063 13.1 0.0 1.7 1 0 0 1 1 1 0 G6B family Filament PF00038.21 gi|289583151|ref|YP_003481617.1| - 0.07 12.7 68.3 0.41 10.2 21.3 5.6 1 1 1 4 4 4 0 Intermediate filament protein Nup54 PF13874.6 gi|289583151|ref|YP_003481617.1| - 0.11 12.6 40.3 3.5 7.7 8.0 6.1 1 1 4 5 5 5 0 Nucleoporin complex subunit 54 DUF1359 PF07097.11 gi|289583151|ref|YP_003481617.1| - 0.16 12.2 2.3 8.9 6.6 0.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) MscS_porin PF12795.7 gi|289583151|ref|YP_003481617.1| - 0.25 10.9 86.2 0.3 10.6 25.1 5.8 1 1 4 5 5 5 0 Mechanosensitive ion channel porin domain DUF4665 PF15679.5 gi|289583151|ref|YP_003481617.1| - 1 10.0 2.1 18 6.0 0.0 3.7 4 0 0 4 4 2 0 Domain of unknown function (DUF4665) BLOC1_2 PF10046.9 gi|289583151|ref|YP_003481617.1| - 1.3 9.4 64.6 0.95 9.8 1.0 9.6 2 2 8 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Snapin_Pallidin PF14712.6 gi|289583151|ref|YP_003481617.1| - 1.5 9.3 41.0 2.9 8.4 0.8 8.5 2 1 9 12 12 12 0 Snapin/Pallidin Lectin_N PF03954.14 gi|289583151|ref|YP_003481617.1| - 4.9 6.9 40.0 1.2 8.9 0.6 7.8 2 1 5 7 7 7 0 Hepatic lectin, N-terminal domain CENP-F_leu_zip PF10473.9 gi|289583151|ref|YP_003481617.1| - 6.9 6.7 79.1 0.79 9.7 7.8 7.2 1 1 7 8 8 8 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_MLP1_2 PF07926.12 gi|289583151|ref|YP_003481617.1| - 8.1 6.5 89.6 0.097 12.7 9.6 7.7 1 1 8 9 9 9 0 TPR/MLP1/MLP2-like protein MOSC_N PF03476.16 gi|289583152|ref|YP_003481618.1| - 1.5e-15 57.2 0.0 4.1e-15 55.7 0.0 1.8 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|289583152|ref|YP_003481618.1| - 6.6e-08 32.7 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 MOSC domain PEPCK_ATP PF01293.20 gi|289583153|ref|YP_003481619.1| - 3.1e-59 200.9 0.0 8.3e-59 199.5 0.0 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase CutA1 PF03091.15 gi|289583155|ref|YP_003481621.1| - 4.4e-28 97.0 0.0 4.8e-28 96.9 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Ribosomal_L11 PF00298.19 gi|289583156|ref|YP_003481622.1| - 1.9e-20 73.1 0.0 2.8e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|289583156|ref|YP_003481622.1| - 1.9e-17 62.8 0.1 2.9e-17 62.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Methyltransf_23 PF13489.6 gi|289583157|ref|YP_003481623.1| - 5.6e-07 29.5 0.0 9.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289583157|ref|YP_003481623.1| - 9e-07 28.8 0.0 0.03 14.1 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289583157|ref|YP_003481623.1| - 3.1e-06 27.9 0.0 0.00017 22.3 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|289583157|ref|YP_003481623.1| - 1.1e-05 26.0 0.0 0.28 11.9 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289583157|ref|YP_003481623.1| - 4.9e-05 23.9 0.0 0.015 16.0 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|289583158|ref|YP_003481624.1| - 1e-32 113.1 0.0 1.4e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|289583158|ref|YP_003481624.1| - 2.5e-28 99.2 0.0 5.1e-28 98.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|289583158|ref|YP_003481624.1| - 1e-09 38.7 0.7 1.9e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|289583158|ref|YP_003481624.1| - 0.00089 19.3 0.2 0.28 11.2 0.4 2.3 1 1 1 2 2 2 2 Glycosyltransferase Family 4 PTPS PF01242.19 gi|289583159|ref|YP_003481625.1| - 5.2e-17 62.0 0.0 5.5e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.26 gi|289583160|ref|YP_003481626.1| - 3e-08 33.7 0.0 4.6e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|289583160|ref|YP_003481626.1| - 0.0051 16.3 0.0 0.045 13.2 0.0 2.5 2 1 0 2 2 2 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|289583160|ref|YP_003481626.1| - 0.032 14.1 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|289583160|ref|YP_003481626.1| - 0.095 13.8 0.0 0.21 12.7 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase CDP-OH_P_transf PF01066.21 gi|289583161|ref|YP_003481627.1| - 2e-07 31.7 4.1 2e-07 31.7 4.1 3.1 2 2 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF913 PF06025.12 gi|289583162|ref|YP_003481628.1| - 0.14 11.2 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) DUF4381 PF14316.6 gi|289583162|ref|YP_003481628.1| - 0.35 11.1 6.1 0.1 12.9 2.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) CbiQ PF02361.16 gi|289583162|ref|YP_003481628.1| - 0.44 10.1 8.6 0.66 9.6 8.6 1.4 1 1 0 1 1 1 0 Cobalt transport protein DUF4282 PF14110.6 gi|289583162|ref|YP_003481628.1| - 1.3 9.8 9.9 3.9 8.3 4.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF2970 PF11174.8 gi|289583162|ref|YP_003481628.1| - 3.3 7.6 8.9 0.57 10.1 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2970) Ribosomal_L1 PF00687.21 gi|289583164|ref|YP_003481630.1| - 1.8e-40 138.9 0.0 2.1e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|289583165|ref|YP_003481631.1| - 1.1e-23 83.3 0.0 2e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|289583165|ref|YP_003481631.1| - 2.7e-16 59.3 0.0 5.4e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P RNA_pol_3_Rpc31 PF11705.8 gi|289583165|ref|YP_003481631.1| - 0.042 14.1 12.2 0.064 13.5 12.2 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Cwf_Cwc_15 PF04889.12 gi|289583165|ref|YP_003481631.1| - 0.15 11.8 8.5 0.22 11.2 8.5 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_60s PF00428.19 gi|289583165|ref|YP_003481631.1| - 1.5 9.4 17.7 1.3 9.7 13.2 2.8 3 0 0 3 3 3 0 60s Acidic ribosomal protein Nop53 PF07767.11 gi|289583165|ref|YP_003481631.1| - 1.7 8.0 7.5 2.6 7.3 7.5 1.2 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) DUF2457 PF10446.9 gi|289583165|ref|YP_003481631.1| - 5 6.2 18.9 7.4 5.6 18.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CENP-B_dimeris PF09026.10 gi|289583165|ref|YP_003481631.1| - 5.6 7.4 16.8 11 6.5 16.8 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain NOA36 PF06524.12 gi|289583165|ref|YP_003481631.1| - 6.7 5.9 14.0 9.8 5.4 14.0 1.1 1 0 0 1 1 1 0 NOA36 protein Ribosomal_60s PF00428.19 gi|289583166|ref|YP_003481632.1| - 1.8e-15 57.3 15.5 2.5e-15 56.8 15.5 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|289583166|ref|YP_003481632.1| - 0.1 11.1 6.6 0.12 10.9 6.6 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Shadoo PF14999.6 gi|289583166|ref|YP_003481632.1| - 0.23 11.5 7.4 0.3 11.2 7.4 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective HAD_2 PF13419.6 gi|289583167|ref|YP_003481633.1| - 8.9e-20 71.5 0.0 1.1e-19 71.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|289583167|ref|YP_003481633.1| - 3.3e-10 39.9 0.7 1.5e-09 37.8 0.5 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|289583167|ref|YP_003481633.1| - 3.2e-08 34.1 0.7 2.6e-07 31.2 0.7 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|289583167|ref|YP_003481633.1| - 5.7e-07 30.1 0.2 1e-06 29.3 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|289583167|ref|YP_003481633.1| - 0.15 12.2 0.0 22 5.3 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase TctA PF01970.16 gi|289583168|ref|YP_003481634.1| - 1e-61 208.9 44.6 1.2e-61 208.6 44.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family BtpA PF03437.15 gi|289583169|ref|YP_003481635.1| - 3e-84 282.4 3.2 3.4e-84 282.2 3.2 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|289583169|ref|YP_003481635.1| - 0.0041 16.0 1.2 0.0065 15.3 1.2 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Fe-ADH_2 PF13685.6 gi|289583169|ref|YP_003481635.1| - 0.077 12.7 4.6 0.021 14.5 1.3 1.8 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase PcrB PF01884.17 gi|289583169|ref|YP_003481635.1| - 1 8.8 8.3 1.4 8.3 0.4 2.6 2 1 1 3 3 3 0 PcrB family Oxidored_FMN PF00724.20 gi|289583170|ref|YP_003481636.1| - 2.7e-68 230.7 0.0 3.2e-68 230.5 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family TAT_signal PF10518.9 gi|289583171|ref|YP_003481637.1| - 0.00033 20.4 1.1 0.00054 19.7 1.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|289583171|ref|YP_003481637.1| - 0.0052 17.2 0.1 0.013 15.9 0.1 1.7 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family AhpC-TSA PF00578.21 gi|289583172|ref|YP_003481638.1| - 5.7e-15 55.3 0.0 7.7e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|289583172|ref|YP_003481638.1| - 2.7e-12 46.6 0.0 3.5e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin TatD_DNase PF01026.21 gi|289583172|ref|YP_003481638.1| - 0.03 13.7 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase Thioredoxin_2 PF13098.6 gi|289583172|ref|YP_003481638.1| - 0.034 14.6 0.2 0.065 13.7 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.6 gi|289583172|ref|YP_003481638.1| - 0.043 13.6 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|289583172|ref|YP_003481638.1| - 0.049 14.0 0.0 0.072 13.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like AsnC_trans_reg PF01037.21 gi|289583174|ref|YP_003481640.1| - 5.5e-14 51.9 0.2 1e-13 51.1 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|289583174|ref|YP_003481640.1| - 1.2e-08 34.4 0.1 3.6e-08 32.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|289583174|ref|YP_003481640.1| - 9.7e-07 28.5 0.8 2.4e-06 27.3 0.3 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|289583174|ref|YP_003481640.1| - 3.1e-06 27.6 0.0 0.00024 21.5 0.1 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|289583174|ref|YP_003481640.1| - 3.5e-05 23.6 0.1 7.3e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|289583174|ref|YP_003481640.1| - 0.0042 17.0 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|289583174|ref|YP_003481640.1| - 0.017 15.1 0.2 0.034 14.1 0.1 1.6 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|289583174|ref|YP_003481640.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|289583174|ref|YP_003481640.1| - 0.026 14.6 0.5 0.053 13.6 0.2 1.6 2 0 0 2 2 1 0 DprA winged helix domain HTH_54 PF18607.1 gi|289583174|ref|YP_003481640.1| - 0.033 14.2 0.0 0.67 10.1 0.0 2.2 2 0 0 2 2 2 0 ParA helix turn helix domain HTH_IclR PF09339.10 gi|289583174|ref|YP_003481640.1| - 0.036 13.9 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|289583174|ref|YP_003481640.1| - 0.039 14.0 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|289583174|ref|YP_003481640.1| - 0.044 13.5 0.2 0.51 10.1 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 TrmB PF01978.19 gi|289583174|ref|YP_003481640.1| - 0.047 13.6 0.2 0.092 12.6 0.2 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FtsK_gamma PF09397.10 gi|289583174|ref|YP_003481640.1| - 0.05 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Ftsk gamma domain She9_MDM33 PF05546.11 gi|289583174|ref|YP_003481640.1| - 0.12 12.1 0.2 0.58 9.9 0.1 2.1 1 1 1 2 2 2 0 She9 / Mdm33 family DUF2582 PF10771.9 gi|289583174|ref|YP_003481640.1| - 0.14 12.3 0.0 0.45 10.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix domain (DUF2582) HemN_C PF06969.16 gi|289583174|ref|YP_003481640.1| - 0.34 11.0 1.6 14 5.8 0.0 2.3 2 0 0 2 2 2 0 HemN C-terminal domain Aminotran_1_2 PF00155.21 gi|289583175|ref|YP_003481641.1| - 1.2e-70 238.6 0.0 1.3e-70 238.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|289583175|ref|YP_003481641.1| - 1.1e-07 31.4 0.0 2.6e-07 30.2 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|289583175|ref|YP_003481641.1| - 6e-05 22.2 0.0 0.00018 20.6 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|289583175|ref|YP_003481641.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family SCP2_2 PF13530.6 gi|289583176|ref|YP_003481642.1| - 1.5e-22 80.0 0.0 2.6e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_17 PF17668.1 gi|289583176|ref|YP_003481642.1| - 6.2e-22 78.6 1.3 1.2e-21 77.6 0.3 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289583176|ref|YP_003481642.1| - 3.4e-21 75.7 0.0 7.3e-21 74.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|289583176|ref|YP_003481642.1| - 4.8e-06 26.8 0.1 0.00067 19.9 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|289583176|ref|YP_003481642.1| - 0.00047 20.5 0.0 0.0083 16.5 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|289583176|ref|YP_003481642.1| - 0.054 13.6 0.0 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase ETX_MTX2 PF03318.13 gi|289583176|ref|YP_003481642.1| - 0.22 11.3 0.0 18 5.0 0.0 2.2 2 0 0 2 2 2 0 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 STAS_2 PF13466.6 gi|289583176|ref|YP_003481642.1| - 0.25 11.7 6.4 3.7 7.9 1.9 3.2 3 0 0 3 3 3 0 STAS domain DAO PF01266.24 gi|289583178|ref|YP_003481644.1| - 2e-76 257.9 2.6 2.3e-76 257.7 2.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289583178|ref|YP_003481644.1| - 2.4e-13 50.0 0.4 3.8e-13 49.3 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|289583178|ref|YP_003481644.1| - 8.2e-08 31.9 0.5 0.00043 19.6 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|289583178|ref|YP_003481644.1| - 1.6e-07 30.9 0.0 0.00012 21.4 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289583178|ref|YP_003481644.1| - 2.3e-07 30.9 0.1 5e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|289583178|ref|YP_003481644.1| - 1.2e-06 28.2 1.3 7.4e-06 25.6 1.3 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|289583178|ref|YP_003481644.1| - 3.3e-06 26.7 0.2 0.0074 15.6 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|289583178|ref|YP_003481644.1| - 5.6e-06 25.8 0.3 0.0061 15.8 1.2 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|289583178|ref|YP_003481644.1| - 3.1e-05 24.4 1.7 0.00011 22.7 1.9 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289583178|ref|YP_003481644.1| - 0.00019 20.3 1.4 0.0073 15.1 1.8 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|289583178|ref|YP_003481644.1| - 0.0016 18.8 0.0 0.0027 18.1 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.22 gi|289583178|ref|YP_003481644.1| - 0.002 17.3 0.7 0.0067 15.6 0.8 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|289583178|ref|YP_003481644.1| - 0.0029 16.9 0.4 0.0045 16.3 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|289583178|ref|YP_003481644.1| - 0.0034 16.6 0.1 0.0059 15.9 0.1 1.4 1 0 0 1 1 1 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|289583178|ref|YP_003481644.1| - 0.016 14.8 0.7 0.029 13.9 0.7 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|289583178|ref|YP_003481644.1| - 0.034 13.8 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|289583178|ref|YP_003481644.1| - 0.04 13.8 0.3 0.067 13.1 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|289583178|ref|YP_003481644.1| - 0.098 12.2 1.2 1.5 8.4 0.4 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trp_halogenase PF04820.14 gi|289583178|ref|YP_003481644.1| - 0.13 11.1 1.6 0.36 9.6 1.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|289583178|ref|YP_003481644.1| - 0.19 11.7 2.1 1.8 8.5 0.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.24 gi|289583179|ref|YP_003481645.1| - 2.5e-52 178.6 7.1 2.9e-52 178.4 7.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|289583179|ref|YP_003481645.1| - 3.3e-12 46.2 0.1 3.2e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|289583179|ref|YP_003481645.1| - 1e-08 34.5 0.5 0.00092 18.2 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|289583179|ref|YP_003481645.1| - 4.2e-08 33.6 0.3 0.0018 18.8 0.3 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|289583179|ref|YP_003481645.1| - 2e-07 30.6 0.0 0.00089 18.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|289583179|ref|YP_003481645.1| - 4.6e-06 26.0 4.3 6.4e-06 25.5 4.3 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|289583179|ref|YP_003481645.1| - 8.8e-06 25.8 1.8 0.029 14.4 0.0 2.6 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|289583179|ref|YP_003481645.1| - 1.3e-05 25.3 0.1 6.5e-05 23.1 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|289583179|ref|YP_003481645.1| - 0.00043 19.9 1.0 0.001 18.7 0.1 2.0 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 gi|289583179|ref|YP_003481645.1| - 0.00067 18.5 0.5 0.57 8.8 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|289583179|ref|YP_003481645.1| - 0.0012 18.2 5.1 0.021 14.2 5.1 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase adh_short PF00106.25 gi|289583179|ref|YP_003481645.1| - 0.0062 16.0 0.6 0.024 14.1 0.1 2.0 2 0 0 2 2 2 1 short chain dehydrogenase GMC_oxred_N PF00732.19 gi|289583179|ref|YP_003481645.1| - 0.0078 15.6 0.1 0.8 9.0 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase FAD_binding_3 PF01494.19 gi|289583179|ref|YP_003481645.1| - 0.0087 15.3 2.3 1.9 7.6 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain Amino_oxidase PF01593.24 gi|289583179|ref|YP_003481645.1| - 0.013 14.8 0.2 0.027 13.8 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|289583179|ref|YP_003481645.1| - 0.019 15.2 0.1 0.052 13.8 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|289583179|ref|YP_003481645.1| - 0.031 13.8 0.4 0.068 12.7 0.3 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|289583179|ref|YP_003481645.1| - 0.032 14.5 0.1 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|289583179|ref|YP_003481645.1| - 0.053 13.4 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|289583179|ref|YP_003481645.1| - 0.074 13.6 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.12 gi|289583179|ref|YP_003481645.1| - 0.09 11.8 0.9 2.2 7.3 0.1 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein GIDA PF01134.22 gi|289583179|ref|YP_003481645.1| - 0.098 11.7 1.7 3.7 6.5 1.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A OCD_Mu_crystall PF02423.15 gi|289583180|ref|YP_003481646.1| - 3.2e-57 193.9 0.2 3.9e-57 193.6 0.2 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|289583180|ref|YP_003481646.1| - 0.13 12.9 0.0 0.33 11.6 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PAS_4 PF08448.10 gi|289583181|ref|YP_003481647.1| - 4.8e-23 81.5 8.7 4.2e-13 49.5 0.2 3.2 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|289583181|ref|YP_003481647.1| - 2.2e-15 56.6 0.7 1.4e-07 31.5 0.4 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|289583181|ref|YP_003481647.1| - 1.1e-14 54.6 0.4 3.7e-08 33.5 0.3 2.6 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|289583181|ref|YP_003481647.1| - 1e-12 48.5 0.1 3.3e-12 46.9 0.1 2.0 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|289583181|ref|YP_003481647.1| - 1.9e-12 46.9 0.3 4.2e-06 26.6 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|289583181|ref|YP_003481647.1| - 6.5e-08 33.0 0.0 2.4e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|289583181|ref|YP_003481647.1| - 0.0068 17.0 0.0 0.023 15.3 0.0 2.0 1 0 0 1 1 1 1 GAF domain Synaptobrevin PF00957.21 gi|289583181|ref|YP_003481647.1| - 0.052 13.4 0.2 4.5 7.1 0.3 2.6 2 0 0 2 2 2 0 Synaptobrevin Response_reg PF00072.24 gi|289583182|ref|YP_003481648.1| - 1.7e-19 70.0 0.3 2.8e-19 69.3 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|289583182|ref|YP_003481648.1| - 8.2e-17 61.3 8.6 1.9e-16 60.1 8.6 1.7 1 0 0 1 1 1 1 HalX domain AIRS PF00586.24 gi|289583183|ref|YP_003481649.1| - 2.1e-40 137.3 7.5 2.7e-22 79.2 0.2 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|289583183|ref|YP_003481649.1| - 1e-38 132.9 8.5 8.2e-31 107.2 1.7 2.6 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|289583183|ref|YP_003481649.1| - 4.6e-07 30.3 0.2 1.2e-06 28.9 0.2 1.8 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain PHP_C PF13263.6 gi|289583184|ref|YP_003481650.1| - 1.5e-23 82.3 1.0 2.5e-23 81.5 1.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|289583184|ref|YP_003481650.1| - 6.1e-08 33.2 0.0 8.9e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 PHP domain DpaA_N PF16924.5 gi|289583184|ref|YP_003481650.1| - 0.15 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Asn_synthase PF00733.21 gi|289583185|ref|YP_003481651.1| - 4.1e-32 112.2 8.2 1.7e-21 77.3 2.1 2.1 1 1 1 2 2 2 2 Asparagine synthase tRNA_Me_trans PF03054.16 gi|289583185|ref|YP_003481651.1| - 0.045 12.6 0.1 0.069 11.9 0.1 1.2 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 gi|289583185|ref|YP_003481651.1| - 0.12 11.4 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Cupin_2 PF07883.11 gi|289583186|ref|YP_003481652.1| - 1.3e-10 40.8 1.8 2.3e-10 40.0 1.8 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 gi|289583186|ref|YP_003481652.1| - 0.028 14.1 0.1 0.031 14.0 0.1 1.1 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.12 gi|289583186|ref|YP_003481652.1| - 0.029 14.1 0.2 0.048 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|289583186|ref|YP_003481652.1| - 0.035 13.6 0.0 0.035 13.5 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO MannoseP_isomer PF01050.18 gi|289583186|ref|YP_003481652.1| - 0.054 13.4 0.0 0.066 13.1 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase CDO_I PF05995.12 gi|289583186|ref|YP_003481652.1| - 0.15 11.4 0.2 0.23 10.8 0.1 1.4 1 1 0 1 1 1 0 Cysteine dioxygenase type I ParA PF10609.9 gi|289583187|ref|YP_003481653.1| - 4.4e-91 304.7 0.1 5.5e-91 304.4 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|289583187|ref|YP_003481653.1| - 1.6e-13 50.8 0.0 2.6e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|289583187|ref|YP_003481653.1| - 2.2e-11 44.0 0.1 2e-08 34.3 0.2 2.3 2 0 0 2 2 2 2 AAA domain FeS_assembly_P PF01883.19 gi|289583187|ref|YP_003481653.1| - 2.2e-07 31.0 0.1 1.5e-06 28.2 0.0 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein ArsA_ATPase PF02374.15 gi|289583187|ref|YP_003481653.1| - 2e-06 27.2 3.6 0.00039 19.7 0.9 3.0 2 1 1 3 3 3 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|289583187|ref|YP_003481653.1| - 6e-05 23.0 0.1 0.31 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|289583187|ref|YP_003481653.1| - 0.00017 21.0 0.2 0.00034 20.0 0.2 1.4 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 gi|289583187|ref|YP_003481653.1| - 0.00098 18.5 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 gi|289583187|ref|YP_003481653.1| - 0.0012 18.3 0.2 0.093 12.2 0.5 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|289583187|ref|YP_003481653.1| - 0.0034 16.9 0.2 0.097 12.1 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|289583187|ref|YP_003481653.1| - 0.0087 15.7 0.2 0.014 15.0 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|289583187|ref|YP_003481653.1| - 0.055 13.4 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|289583187|ref|YP_003481653.1| - 0.099 12.2 1.0 0.23 11.0 0.6 1.8 1 1 1 2 2 2 0 AAA domain MobB PF03205.14 gi|289583187|ref|YP_003481653.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Ubie_methyltran PF01209.18 gi|289583187|ref|YP_003481653.1| - 0.16 11.3 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF2062 PF09835.9 gi|289583188|ref|YP_003481654.1| - 2.3 8.1 8.7 4.3 7.2 8.4 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) NrfD PF03916.14 gi|289583189|ref|YP_003481655.1| - 6.2e-20 72.1 20.9 6.2e-20 72.1 20.9 2.1 3 0 0 3 3 3 1 Polysulphide reductase, NrfD Ferredoxin_N PF16947.5 gi|289583190|ref|YP_003481656.1| - 8.1e-35 118.7 6.2 8.1e-35 118.7 6.2 3.6 4 0 0 4 4 3 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_10 PF13237.6 gi|289583190|ref|YP_003481656.1| - 1.9e-14 53.5 13.5 5e-09 36.1 0.1 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|289583190|ref|YP_003481656.1| - 1e-12 48.4 23.2 2.9e-07 31.0 6.4 3.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|289583190|ref|YP_003481656.1| - 2.4e-12 46.8 17.5 5.1e-11 42.6 5.3 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|289583190|ref|YP_003481656.1| - 1.4e-07 31.1 34.7 0.00012 21.7 3.5 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|289583190|ref|YP_003481656.1| - 2.6e-07 30.7 28.4 0.0005 20.2 9.2 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|289583190|ref|YP_003481656.1| - 7.4e-06 25.8 10.4 0.00033 20.6 1.9 4.6 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|289583190|ref|YP_003481656.1| - 1.5e-05 24.8 36.3 0.0015 18.6 2.9 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|289583190|ref|YP_003481656.1| - 0.00029 21.5 39.6 0.31 12.1 1.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|289583190|ref|YP_003481656.1| - 0.00034 21.5 20.8 0.28 12.2 1.9 4.7 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|289583190|ref|YP_003481656.1| - 0.0029 18.1 23.1 0.043 14.4 3.5 4.1 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|289583190|ref|YP_003481656.1| - 0.041 14.3 31.3 0.19 12.2 10.6 4.2 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|289583190|ref|YP_003481656.1| - 1.2 9.4 25.0 2.8 8.2 11.2 3.6 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|289583190|ref|YP_003481656.1| - 4 8.2 35.4 0.12 12.9 3.0 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain HTH_10 PF04967.12 gi|289583191|ref|YP_003481657.1| - 9.7e-20 70.1 0.1 2.1e-19 69.0 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|289583191|ref|YP_003481657.1| - 3e-05 24.0 1.1 3e-05 24.0 1.1 2.2 3 1 0 3 3 3 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|289583191|ref|YP_003481657.1| - 0.00093 18.7 0.0 0.0066 16.0 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289583191|ref|YP_003481657.1| - 0.00095 19.0 0.1 0.0081 16.0 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|289583191|ref|YP_003481657.1| - 0.0046 16.7 2.0 0.017 14.9 0.2 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|289583191|ref|YP_003481657.1| - 0.008 16.4 0.2 13 6.1 0.0 3.6 4 0 0 4 4 4 1 Transposase HTH_AsnC-type PF13404.6 gi|289583191|ref|YP_003481657.1| - 0.01 15.6 0.2 0.034 14.0 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PuR_N PF09182.10 gi|289583191|ref|YP_003481657.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal PilN PF05137.13 gi|289583191|ref|YP_003481657.1| - 0.017 15.2 0.1 0.057 13.5 0.1 1.8 1 0 0 1 1 1 0 Fimbrial assembly protein (PilN) Fe_dep_repress PF01325.19 gi|289583191|ref|YP_003481657.1| - 0.022 15.0 0.1 0.07 13.3 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|289583191|ref|YP_003481657.1| - 0.023 14.8 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_35 PF13693.6 gi|289583191|ref|YP_003481657.1| - 0.028 14.4 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|289583191|ref|YP_003481657.1| - 0.059 13.5 0.0 0.094 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_Crp_2 PF13545.6 gi|289583191|ref|YP_003481657.1| - 0.095 12.7 0.3 0.46 10.5 0.1 2.3 1 1 2 3 3 3 0 Crp-like helix-turn-helix domain Abhydrolase_1 PF00561.20 gi|289583192|ref|YP_003481658.1| - 4.6e-26 92.0 0.1 8.9e-26 91.1 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|289583192|ref|YP_003481658.1| - 3e-21 77.0 8.6 3.9e-21 76.7 8.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|289583192|ref|YP_003481658.1| - 1.9e-12 47.0 0.0 4.3e-12 45.8 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|289583192|ref|YP_003481658.1| - 0.00061 19.5 0.0 0.0012 18.6 0.0 1.8 1 1 0 1 1 1 1 Putative esterase PGAP1 PF07819.13 gi|289583192|ref|YP_003481658.1| - 0.024 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Chlorophyllase PF07224.11 gi|289583192|ref|YP_003481658.1| - 0.12 11.3 0.0 0.23 10.5 0.0 1.4 1 1 0 1 1 1 0 Chlorophyllase FSH1 PF03959.13 gi|289583192|ref|YP_003481658.1| - 0.2 11.3 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) VATC PF18716.1 gi|289583193|ref|YP_003481659.1| - 0.0069 16.2 3.1 0.09 12.6 3.1 2.0 1 1 0 1 1 1 1 Vms1-associating treble clef domain TFIIB PF00382.19 gi|289583194|ref|YP_003481660.1| - 1.6e-37 127.4 0.0 1.7e-17 63.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289583194|ref|YP_003481660.1| - 3.1e-14 52.2 1.6 6.1e-14 51.3 1.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|289583194|ref|YP_003481660.1| - 0.049 13.7 0.0 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Auto_anti-p27 PF06677.12 gi|289583194|ref|YP_003481660.1| - 0.049 13.8 1.6 0.088 13.0 1.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YopD PF05844.12 gi|289583194|ref|YP_003481660.1| - 0.1 11.6 0.3 0.25 10.3 0.3 1.5 1 0 0 1 1 1 0 YopD protein A2L_zn_ribbon PF08792.10 gi|289583194|ref|YP_003481660.1| - 0.15 11.8 2.4 15 5.5 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.7 gi|289583194|ref|YP_003481660.1| - 0.26 11.4 2.2 0.47 10.5 2.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Glu-tRNAGln PF02686.15 gi|289583195|ref|YP_003481661.1| - 6.2e-18 64.8 3.4 6.5e-18 64.8 2.6 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|289583196|ref|YP_003481662.1| - 1.5e-145 485.7 0.5 1.8e-145 485.4 0.5 1.0 1 0 0 1 1 1 1 Amidase RseC_MucC PF04246.12 gi|289583197|ref|YP_003481663.1| - 0.59 10.1 3.5 0.29 11.1 1.0 1.7 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HTH_27 PF13463.6 gi|289583198|ref|YP_003481664.1| - 0.0092 16.5 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|289583198|ref|YP_003481664.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|289583198|ref|YP_003481664.1| - 0.017 15.3 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TANGO2 PF05742.12 gi|289583199|ref|YP_003481665.1| - 7.6e-26 91.7 0.0 2.8e-25 89.8 0.0 1.8 1 1 0 1 1 1 1 Transport and Golgi organisation 2 AAT PF03417.16 gi|289583199|ref|YP_003481665.1| - 0.093 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase DZR PF12773.7 gi|289583200|ref|YP_003481666.1| - 0.00017 21.5 9.7 0.011 15.8 1.4 1.3 1 1 1 2 2 2 2 Double zinc ribbon DUF1272 PF06906.11 gi|289583200|ref|YP_003481666.1| - 0.0014 18.6 0.8 0.0016 18.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|289583200|ref|YP_003481666.1| - 0.0016 18.5 4.5 0.0051 16.9 4.5 1.8 1 1 1 2 2 2 2 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|289583200|ref|YP_003481666.1| - 0.0038 17.2 0.5 0.0041 17.1 0.5 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|289583200|ref|YP_003481666.1| - 0.013 15.5 1.0 0.014 15.5 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|289583200|ref|YP_003481666.1| - 0.02 14.8 0.7 0.022 14.6 0.7 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-AN1 PF01428.16 gi|289583200|ref|YP_003481666.1| - 0.064 13.4 1.1 1.3 9.3 1.7 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger ADK_lid PF05191.14 gi|289583200|ref|YP_003481666.1| - 0.16 12.0 1.3 0.44 10.6 1.3 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid Sgf11 PF08209.11 gi|289583200|ref|YP_003481666.1| - 0.21 11.2 1.6 0.78 9.4 0.1 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2_4 PF13894.6 gi|289583200|ref|YP_003481666.1| - 0.25 12.3 1.1 15 6.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Desulfoferrod_N PF06397.12 gi|289583200|ref|YP_003481666.1| - 0.36 10.5 4.6 0.14 11.8 0.8 1.9 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain AMP-binding PF00501.28 gi|289583201|ref|YP_003481667.1| - 1e-81 274.7 1.2 1.2e-81 274.5 1.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|289583201|ref|YP_003481667.1| - 2.8e-16 60.2 0.1 5.2e-16 59.4 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|289583202|ref|YP_003481668.1| - 1.2e-40 139.4 2.9 1.9e-40 138.8 2.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like Enolase_N PF03952.16 gi|289583202|ref|YP_003481668.1| - 0.18 12.0 0.1 0.35 11.0 0.1 1.5 1 0 0 1 1 1 0 Enolase, N-terminal domain UbiA PF01040.18 gi|289583203|ref|YP_003481669.1| - 4.8e-41 140.7 24.5 6.1e-41 140.4 24.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Cohesin PF00963.18 gi|289583204|ref|YP_003481670.1| - 0.0018 18.5 0.2 0.0028 17.9 0.2 1.3 1 0 0 1 1 1 1 Cohesin domain Gram_pos_anchor PF00746.21 gi|289583204|ref|YP_003481670.1| - 0.09 12.7 0.8 0.18 11.7 0.8 1.5 1 0 0 1 1 1 0 LPXTG cell wall anchor motif Iron_transport PF10634.9 gi|289583205|ref|YP_003481671.1| - 0.00045 20.4 0.2 0.0042 17.3 0.0 2.4 3 0 0 3 3 3 1 Fe2+ transport protein TAT_signal PF10518.9 gi|289583205|ref|YP_003481671.1| - 0.026 14.4 0.5 0.046 13.6 0.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.22 gi|289583205|ref|YP_003481671.1| - 1.2 8.2 8.9 1.7 7.8 8.9 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter PPC PF04151.15 gi|289583205|ref|YP_003481671.1| - 1.7 9.8 5.3 4.1 8.6 0.0 3.5 4 0 0 4 4 4 0 Bacterial pre-peptidase C-terminal domain ECH_1 PF00378.20 gi|289583207|ref|YP_003481673.1| - 3.8e-54 183.6 0.0 6.8e-54 182.8 0.0 1.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|289583207|ref|YP_003481673.1| - 4.4e-13 49.4 0.0 8.5e-13 48.5 0.0 1.4 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase HydF_tetramer PF18133.1 gi|289583208|ref|YP_003481674.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Hydrogen maturase F tetramerization domain RE_HaeII PF09554.10 gi|289583208|ref|YP_003481674.1| - 0.069 12.4 0.0 0.083 12.1 0.0 1.1 1 0 0 1 1 1 0 HaeII restriction endonuclease DUF5518 PF17647.1 gi|289583210|ref|YP_003481676.1| - 1.2e-22 80.3 19.8 1.4e-22 80.1 19.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) EMC3_TMCO1 PF01956.16 gi|289583210|ref|YP_003481676.1| - 0.089 12.5 0.4 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 Integral membrane protein EMC3/TMCO1-like Phage_holin_2_3 PF16080.5 gi|289583210|ref|YP_003481676.1| - 1.5 8.6 4.7 21 5.0 0.4 2.6 2 0 0 2 2 2 0 Bacteriophage holin family HP1 HxlR PF01638.17 gi|289583212|ref|YP_003481678.1| - 3.2e-06 26.9 0.1 5.7e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|289583212|ref|YP_003481678.1| - 0.00073 19.7 0.1 0.0011 19.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|289583212|ref|YP_003481678.1| - 0.0012 18.6 0.1 0.0035 17.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|289583212|ref|YP_003481678.1| - 0.008 16.6 0.3 0.032 14.7 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|289583212|ref|YP_003481678.1| - 0.036 14.0 0.1 0.061 13.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.14 gi|289583212|ref|YP_003481678.1| - 0.061 13.3 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|289583212|ref|YP_003481678.1| - 0.07 12.7 0.3 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DDE_Tnp_1 PF01609.21 gi|289583213|ref|YP_003481679.1| - 2e-08 34.1 0.0 1.4e-07 31.4 0.0 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|289583213|ref|YP_003481679.1| - 0.0089 14.3 0.1 0.077 11.3 0.0 2.3 3 0 0 3 3 3 1 Transposase DDE domain group 1 DUF1178 PF06676.11 gi|289583213|ref|YP_003481679.1| - 0.037 14.4 1.7 0.056 13.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1178) DnaJ PF00226.31 gi|289583214|ref|YP_003481680.1| - 3.9e-21 74.9 0.2 6.6e-21 74.2 0.2 1.4 1 0 0 1 1 1 1 DnaJ domain YqhR PF11085.8 gi|289583214|ref|YP_003481680.1| - 0.31 11.0 4.7 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 Conserved membrane protein YqhR FAM76 PF16046.5 gi|289583214|ref|YP_003481680.1| - 1.6 8.0 10.4 2.4 7.4 10.4 1.3 1 0 0 1 1 1 0 FAM76 protein TPP_enzyme_N PF02776.18 gi|289583215|ref|YP_003481681.1| - 4.4e-36 124.1 0.4 1.1e-35 122.8 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|289583215|ref|YP_003481681.1| - 1.2e-07 31.7 0.0 3e-06 27.1 0.0 2.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|289583215|ref|YP_003481681.1| - 0.00015 21.6 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate Chorismate_bind PF00425.18 gi|289583216|ref|YP_003481682.1| - 3e-74 249.9 0.0 4.5e-74 249.3 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.19 gi|289583217|ref|YP_003481683.1| - 1.3e-37 129.1 0.0 1.6e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RHH_1 PF01402.21 gi|289583219|ref|YP_003481685.1| - 0.0025 17.7 0.1 0.004 17.0 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|289583219|ref|YP_003481685.1| - 0.013 15.3 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator YjbE PF11106.8 gi|289583220|ref|YP_003481686.1| - 0.0017 18.6 0.3 0.0019 18.4 0.3 1.2 1 0 0 1 1 1 1 Exopolysaccharide production protein YjbE His_biosynth PF00977.21 gi|289583221|ref|YP_003481687.1| - 1.7e-81 273.1 0.1 1.9e-81 272.9 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|289583221|ref|YP_003481687.1| - 2.3e-10 40.1 0.0 5e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|289583221|ref|YP_003481687.1| - 1.1e-08 34.9 0.3 6.4e-05 22.5 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|289583221|ref|YP_003481687.1| - 1.2e-06 28.1 0.1 0.0029 16.9 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|289583221|ref|YP_003481687.1| - 2.4e-05 23.8 0.1 9.5e-05 21.9 0.1 1.8 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|289583221|ref|YP_003481687.1| - 0.00018 20.8 0.1 0.0027 17.0 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|289583221|ref|YP_003481687.1| - 0.0015 17.9 0.3 0.053 12.9 0.1 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase PcrB PF01884.17 gi|289583221|ref|YP_003481687.1| - 0.0023 17.4 0.1 0.004 16.6 0.1 1.3 1 0 0 1 1 1 1 PcrB family IMPDH PF00478.25 gi|289583221|ref|YP_003481687.1| - 0.0054 15.8 0.2 0.016 14.3 0.1 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|289583221|ref|YP_003481687.1| - 0.024 13.7 0.1 0.051 12.6 0.1 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|289583221|ref|YP_003481687.1| - 0.025 13.7 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase PEP_mutase PF13714.6 gi|289583221|ref|YP_003481687.1| - 0.082 12.3 0.2 0.52 9.7 0.0 2.3 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase IGPS PF00218.21 gi|289583221|ref|YP_003481687.1| - 0.23 10.6 0.0 1.2 8.3 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase zinc_ribbon_2 PF13240.6 gi|289583222|ref|YP_003481688.1| - 1.6e-08 34.0 18.5 0.00022 20.8 5.9 2.4 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|289583222|ref|YP_003481688.1| - 0.017 15.3 5.4 0.52 10.5 0.5 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C4pol PF14260.6 gi|289583222|ref|YP_003481688.1| - 0.24 11.9 4.3 4.1 7.9 0.7 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.7 gi|289583222|ref|YP_003481688.1| - 0.29 11.2 13.5 2.6 8.1 13.6 2.2 1 1 1 2 2 2 0 Double zinc ribbon zf-RING_10 PF16685.5 gi|289583222|ref|YP_003481688.1| - 0.36 11.0 5.3 0.29 11.3 0.4 2.4 2 0 0 2 2 2 0 zinc RING finger of MSL2 DUF3716 PF12511.8 gi|289583222|ref|YP_003481688.1| - 0.48 10.5 6.1 0.6 10.2 2.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) Zn-ribbon_8 PF09723.10 gi|289583222|ref|YP_003481688.1| - 0.52 10.5 11.6 0.35 11.0 0.8 2.9 2 1 0 2 2 2 0 Zinc ribbon domain Cytochrom_c3_2 PF14537.6 gi|289583222|ref|YP_003481688.1| - 2 9.0 10.2 24 5.5 10.2 2.3 1 1 0 1 1 1 0 Cytochrome c3 NCD3G PF07562.14 gi|289583222|ref|YP_003481688.1| - 2.8 8.0 12.5 0.16 11.9 1.1 2.3 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR Gmx_para_CXXCG PF09535.10 gi|289583222|ref|YP_003481688.1| - 3.7 6.7 5.6 18 4.5 1.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) ADK_lid PF05191.14 gi|289583222|ref|YP_003481688.1| - 5 7.2 10.6 3.2 7.8 3.4 3.0 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.12 gi|289583222|ref|YP_003481688.1| - 5.2 7.1 7.2 7.4 6.6 0.9 2.3 2 0 0 2 2 2 0 zinc-ribbons RNA_pol_L_2 PF13656.6 gi|289583223|ref|YP_003481689.1| - 2.8e-16 59.0 0.0 3.4e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|289583223|ref|YP_003481689.1| - 2.1e-06 27.1 0.0 4.6e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ATP-gua_Ptrans PF00217.19 gi|289583223|ref|YP_003481689.1| - 0.062 12.8 0.0 0.13 11.7 0.0 1.4 1 1 1 2 2 2 0 ATP:guanido phosphotransferase, C-terminal catalytic domain SPW PF03779.14 gi|289583224|ref|YP_003481690.1| - 6.1e-12 44.9 17.4 6.4e-06 25.7 4.4 2.2 2 0 0 2 2 2 2 SPW repeat TspO_MBR PF03073.15 gi|289583224|ref|YP_003481690.1| - 0.0088 16.1 3.4 0.0088 16.1 3.4 1.4 1 1 0 1 1 1 1 TspO/MBR family GlgX_C PF18390.1 gi|289583224|ref|YP_003481690.1| - 0.028 14.2 0.1 6.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Glycogen debranching enzyme C-terminal domain FeoB_associated PF12669.7 gi|289583224|ref|YP_003481690.1| - 0.043 14.2 0.0 3.7 8.0 0.0 2.6 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein 7TMR-DISM_7TM PF07695.11 gi|289583224|ref|YP_003481690.1| - 0.14 12.0 6.9 0.61 10.0 2.0 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF3325 PF11804.8 gi|289583224|ref|YP_003481690.1| - 0.3 11.2 7.6 0.084 13.0 3.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) Bax1-I PF01027.20 gi|289583224|ref|YP_003481690.1| - 0.61 9.9 9.5 0.79 9.5 9.5 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 OppC_N PF12911.7 gi|289583224|ref|YP_003481690.1| - 2.4 8.2 6.3 2.2 8.3 0.8 2.7 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C PrgI PF12666.7 gi|289583224|ref|YP_003481690.1| - 5.8 7.7 7.2 11 6.8 5.1 2.0 1 1 1 2 2 2 0 PrgI family protein Rhomboid PF01694.22 gi|289583225|ref|YP_003481691.1| - 1.2e-06 28.6 19.8 3.8e-05 23.7 9.7 3.2 2 1 1 3 3 3 2 Rhomboid family GspL_C PF12693.7 gi|289583225|ref|YP_003481691.1| - 0.85 9.4 5.0 0.78 9.6 0.4 2.7 2 0 0 2 2 2 0 GspL periplasmic domain ABC_tran PF00005.27 gi|289583226|ref|YP_003481692.1| - 8.5e-35 120.2 0.0 1.1e-34 119.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|289583226|ref|YP_003481692.1| - 3.8e-05 23.3 0.1 6.6e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|289583226|ref|YP_003481692.1| - 9.9e-05 21.9 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|289583226|ref|YP_003481692.1| - 0.0021 18.5 0.6 0.0041 17.5 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|289583226|ref|YP_003481692.1| - 0.0081 15.9 0.7 0.076 12.7 0.7 2.1 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|289583226|ref|YP_003481692.1| - 0.016 15.2 0.1 0.39 10.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|289583226|ref|YP_003481692.1| - 0.018 15.2 2.8 0.25 11.5 2.8 2.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|289583226|ref|YP_003481692.1| - 0.031 14.6 0.2 0.16 12.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|289583226|ref|YP_003481692.1| - 0.052 13.3 0.0 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Thymidylate_kin PF02223.17 gi|289583226|ref|YP_003481692.1| - 0.057 13.1 0.0 7.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase Rad17 PF03215.15 gi|289583226|ref|YP_003481692.1| - 0.06 13.3 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|289583226|ref|YP_003481692.1| - 0.063 12.7 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|289583226|ref|YP_003481692.1| - 0.098 11.9 0.0 0.43 9.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_21 PF13304.6 gi|289583226|ref|YP_003481692.1| - 0.14 11.9 0.4 3.6 7.3 0.1 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system KAP_NTPase PF07693.14 gi|289583226|ref|YP_003481692.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_23 PF13476.6 gi|289583226|ref|YP_003481692.1| - 0.16 12.5 0.0 0.22 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|289583227|ref|YP_003481693.1| - 0.0023 18.4 2.8 0.0023 18.4 2.8 2.9 3 0 0 3 3 3 1 FtsX-like permease family PTP_tm PF18861.1 gi|289583227|ref|YP_003481693.1| - 0.28 11.1 1.0 0.54 10.2 1.0 1.4 1 0 0 1 1 1 0 Transmembrane domain of protein tyrosine phosphatase, receptor type J T4SS_CagC PF16943.5 gi|289583227|ref|YP_003481693.1| - 0.35 11.1 8.8 0.56 10.4 0.4 2.9 2 1 1 3 3 3 0 Cag pathogenicity island, type IV secretory system MacB_PCD PF12704.7 gi|289583228|ref|YP_003481694.1| - 1.5e-20 74.4 5.1 1.5e-20 74.4 5.1 2.0 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|289583228|ref|YP_003481694.1| - 1.5e-08 34.9 3.1 1.5e-08 34.9 3.1 2.4 3 0 0 3 3 3 1 FtsX-like permease family GSH-S_ATP PF02955.16 gi|289583228|ref|YP_003481694.1| - 0.063 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain PrmA PF06325.13 gi|289583229|ref|YP_003481695.1| - 5.9e-11 42.3 0.2 8.6e-11 41.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|289583229|ref|YP_003481695.1| - 6.7e-11 42.0 0.0 1.3e-10 41.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|289583229|ref|YP_003481695.1| - 1.3e-09 38.7 0.1 3e-09 37.4 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|289583229|ref|YP_003481695.1| - 4.4e-08 33.0 0.0 7.1e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|289583229|ref|YP_003481695.1| - 1.4e-07 32.0 0.3 3e-07 31.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|289583229|ref|YP_003481695.1| - 1.9e-07 31.0 0.1 1.5e-06 28.1 0.1 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|289583229|ref|YP_003481695.1| - 3.1e-05 23.7 0.0 4e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|289583229|ref|YP_003481695.1| - 8.9e-05 21.9 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_32 PF13679.6 gi|289583229|ref|YP_003481695.1| - 0.00015 21.8 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|289583229|ref|YP_003481695.1| - 0.00063 19.0 0.0 0.00081 18.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_15 PF09445.10 gi|289583229|ref|YP_003481695.1| - 0.0007 19.2 0.0 0.00086 18.9 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|289583229|ref|YP_003481695.1| - 0.00097 19.0 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|289583229|ref|YP_003481695.1| - 0.0074 17.0 0.0 0.012 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|289583229|ref|YP_003481695.1| - 0.036 13.8 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein ADH_zinc_N PF00107.26 gi|289583229|ref|YP_003481695.1| - 0.065 13.2 0.1 0.14 12.1 0.1 1.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Ubie_methyltran PF01209.18 gi|289583229|ref|YP_003481695.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family AP_endonuc_2 PF01261.24 gi|289583230|ref|YP_003481696.1| - 0.0028 17.1 0.0 0.0032 16.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel zf-FPG_IleRS PF06827.14 gi|289583231|ref|YP_003481697.1| - 7.4e-06 25.7 0.8 1.1e-05 25.2 0.8 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|289583231|ref|YP_003481697.1| - 3.4e-05 23.1 2.4 4.7e-05 22.6 2.4 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.13 gi|289583231|ref|YP_003481697.1| - 0.0094 15.7 3.8 0.45 10.3 0.4 2.2 2 0 0 2 2 2 2 InsA N-terminal domain TRAF6_Z2 PF18048.1 gi|289583231|ref|YP_003481697.1| - 0.0096 16.0 2.6 0.42 10.8 0.2 2.2 2 0 0 2 2 2 2 TNF receptor-associated factor 6 zinc finger 2 UPF0547 PF10571.9 gi|289583231|ref|YP_003481697.1| - 0.03 14.4 4.2 0.28 11.3 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|289583231|ref|YP_003481697.1| - 0.042 14.0 2.4 0.077 13.1 2.4 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF4776 PF16003.5 gi|289583231|ref|YP_003481697.1| - 0.082 11.9 0.2 0.078 12.0 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) zf_C2H2_10 PF18414.1 gi|289583231|ref|YP_003481697.1| - 0.099 12.2 1.8 4.1 7.0 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Anti-TRAP PF15777.5 gi|289583231|ref|YP_003481697.1| - 0.13 12.3 2.6 0.2 11.6 2.6 1.4 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn_Tnp_IS1595 PF12760.7 gi|289583231|ref|YP_003481697.1| - 0.17 11.9 5.3 0.89 9.6 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|289583231|ref|YP_003481697.1| - 0.2 11.6 1.8 9.6 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Actin PF00022.19 gi|289583232|ref|YP_003481698.1| - 0.001 17.8 0.0 0.43 9.1 0.0 2.2 2 0 0 2 2 2 2 Actin Diphthamide_syn PF01866.17 gi|289583234|ref|YP_003481700.1| - 6.7e-78 262.2 0.0 8.5e-78 261.9 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|289583234|ref|YP_003481700.1| - 0.023 15.3 0.0 0.52 11.0 0.0 2.5 2 1 0 3 3 3 0 GTP-binding GTPase N-terminal Citrate_bind PF16114.5 gi|289583234|ref|YP_003481700.1| - 0.13 11.7 0.0 0.33 10.4 0.0 1.7 2 0 0 2 2 2 0 ATP citrate lyase citrate-binding Lactamase_B_2 PF12706.7 gi|289583235|ref|YP_003481701.1| - 7.3e-19 68.1 1.1 9.6e-19 67.7 1.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|289583235|ref|YP_003481701.1| - 1e-10 41.8 0.0 1.4e-10 41.3 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289583235|ref|YP_003481701.1| - 0.14 12.1 11.5 1.1 9.2 11.4 2.2 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily BLOC1_2 PF10046.9 gi|289583236|ref|YP_003481702.1| - 2.7e-11 43.6 5.9 0.00075 19.8 0.1 4.2 2 1 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|289583236|ref|YP_003481702.1| - 3.2e-08 33.7 15.1 0.0024 17.9 3.6 4.0 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|289583236|ref|YP_003481702.1| - 1.2e-06 28.6 15.6 0.055 13.7 0.5 4.8 2 1 2 4 4 4 3 Haemolysin XhlA Spc7 PF08317.11 gi|289583236|ref|YP_003481702.1| - 2.1e-06 26.8 12.1 0.00093 18.2 4.2 2.5 1 1 1 2 2 2 2 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|289583236|ref|YP_003481702.1| - 3.8e-06 27.0 5.4 0.0036 17.4 1.2 3.6 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein AAA_13 PF13166.6 gi|289583236|ref|YP_003481702.1| - 6.1e-06 25.2 5.6 6.1e-06 25.2 5.6 2.2 1 1 1 2 2 2 2 AAA domain Baculo_PEP_C PF04513.12 gi|289583236|ref|YP_003481702.1| - 6.6e-06 26.2 16.2 0.00039 20.5 10.3 3.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.21 gi|289583236|ref|YP_003481702.1| - 1.7e-05 24.6 9.2 3.1e-05 23.7 9.2 1.4 1 0 0 1 1 1 1 Intermediate filament protein NPV_P10 PF05531.12 gi|289583236|ref|YP_003481702.1| - 4e-05 24.0 35.2 0.03 14.8 7.1 5.8 2 2 4 6 6 6 3 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.9 gi|289583236|ref|YP_003481702.1| - 4.8e-05 23.4 3.0 4.8e-05 23.4 3.0 3.6 2 1 2 4 4 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.12 gi|289583236|ref|YP_003481702.1| - 0.00012 20.4 13.3 0.0019 16.5 6.5 2.4 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Spectrin PF00435.21 gi|289583236|ref|YP_003481702.1| - 0.00015 22.2 9.4 0.01 16.3 2.0 3.8 1 1 3 4 4 4 2 Spectrin repeat TMF_TATA_bd PF12325.8 gi|289583236|ref|YP_003481702.1| - 0.00019 21.7 10.7 0.21 11.8 0.5 4.5 1 1 3 4 4 4 2 TATA element modulatory factor 1 TATA binding ADIP PF11559.8 gi|289583236|ref|YP_003481702.1| - 0.00027 21.0 0.7 0.18 11.9 0.1 3.1 1 1 2 3 3 3 1 Afadin- and alpha -actinin-Binding DUF2730 PF10805.8 gi|289583236|ref|YP_003481702.1| - 0.00078 19.5 9.8 0.065 13.3 0.7 4.0 2 1 2 4 4 3 2 Protein of unknown function (DUF2730) zf-C4H2 PF10146.9 gi|289583236|ref|YP_003481702.1| - 0.00083 19.7 5.0 0.58 10.4 0.1 2.7 1 1 1 2 2 2 2 Zinc finger-containing protein Laminin_II PF06009.12 gi|289583236|ref|YP_003481702.1| - 0.0011 19.0 21.1 0.011 15.8 2.0 3.9 2 1 2 4 4 3 2 Laminin Domain II DUF724 PF05266.14 gi|289583236|ref|YP_003481702.1| - 0.0014 18.5 0.5 1.2 8.9 0.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF724) Prefoldin_2 PF01920.20 gi|289583236|ref|YP_003481702.1| - 0.0015 18.5 7.8 0.62 10.0 0.2 4.7 1 1 1 3 3 3 1 Prefoldin subunit FlaC_arch PF05377.11 gi|289583236|ref|YP_003481702.1| - 0.0015 18.9 17.7 0.23 11.9 0.6 5.4 2 1 4 6 6 5 1 Flagella accessory protein C (FlaC) HMMR_N PF15905.5 gi|289583236|ref|YP_003481702.1| - 0.0017 17.9 2.8 0.0017 17.9 2.8 2.0 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal CLZ PF16526.5 gi|289583236|ref|YP_003481702.1| - 0.0025 18.1 13.7 0.14 12.5 0.9 5.2 3 1 3 6 6 5 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prominin PF05478.11 gi|289583236|ref|YP_003481702.1| - 0.0025 15.9 2.0 0.0039 15.2 1.7 1.4 1 1 0 1 1 1 1 Prominin COG2 PF06148.11 gi|289583236|ref|YP_003481702.1| - 0.0031 17.6 9.7 2.5 8.2 0.3 3.6 1 1 1 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Golgin_A5 PF09787.9 gi|289583236|ref|YP_003481702.1| - 0.004 16.7 2.3 0.004 16.7 2.3 3.1 2 1 2 4 4 3 2 Golgin subfamily A member 5 Lebercilin PF15619.6 gi|289583236|ref|YP_003481702.1| - 0.0066 16.1 0.1 0.023 14.4 0.0 1.8 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Fib_alpha PF08702.10 gi|289583236|ref|YP_003481702.1| - 0.0074 16.5 4.0 0.044 14.0 0.7 2.8 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family SKA1 PF07160.12 gi|289583236|ref|YP_003481702.1| - 0.0075 16.1 0.5 3 7.6 0.0 3.5 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 Seryl_tRNA_N PF02403.22 gi|289583236|ref|YP_003481702.1| - 0.0079 16.4 5.5 0.63 10.3 0.9 3.8 1 1 3 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Sec34 PF04136.15 gi|289583236|ref|YP_003481702.1| - 0.0089 15.9 6.9 2 8.3 0.5 3.9 1 1 3 4 4 4 1 Sec34-like family Tmemb_cc2 PF10267.9 gi|289583236|ref|YP_003481702.1| - 0.011 14.9 0.6 0.011 14.9 0.6 2.6 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein BRE1 PF08647.11 gi|289583236|ref|YP_003481702.1| - 0.011 15.7 0.1 0.44 10.7 0.0 2.6 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Snapin_Pallidin PF14712.6 gi|289583236|ref|YP_003481702.1| - 0.012 16.1 2.4 0.7 10.4 0.5 3.6 2 1 1 3 3 2 0 Snapin/Pallidin DUF4618 PF15397.6 gi|289583236|ref|YP_003481702.1| - 0.016 14.7 4.7 8.2 5.8 0.1 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4618) COG5 PF10392.9 gi|289583236|ref|YP_003481702.1| - 0.017 15.3 1.6 0.38 10.9 1.3 2.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 GAS PF13851.6 gi|289583236|ref|YP_003481702.1| - 0.02 14.2 0.8 0.22 10.8 0.3 2.6 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF5082 PF16888.5 gi|289583236|ref|YP_003481702.1| - 0.022 15.0 9.7 1.6 9.1 4.0 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) V_ATPase_I PF01496.19 gi|289583236|ref|YP_003481702.1| - 0.029 12.3 2.5 0.13 10.2 0.2 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HrpB7 PF09486.10 gi|289583236|ref|YP_003481702.1| - 0.04 14.3 1.1 0.04 14.3 1.1 6.3 3 1 4 7 7 4 0 Bacterial type III secretion protein (HrpB7) YabA PF06156.13 gi|289583236|ref|YP_003481702.1| - 0.041 14.5 0.4 20 5.9 0.1 3.7 1 1 1 2 2 2 0 Initiation control protein YabA Vac_Fusion PF02346.16 gi|289583236|ref|YP_003481702.1| - 0.046 13.4 0.1 0.26 11.0 0.0 2.3 2 1 1 3 3 1 0 Chordopoxvirus multifunctional envelope protein A27 DUF948 PF06103.11 gi|289583236|ref|YP_003481702.1| - 0.055 13.7 25.4 1 9.7 1.8 4.0 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|289583236|ref|YP_003481702.1| - 0.057 13.9 10.2 1 9.9 3.7 3.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4201 PF13870.6 gi|289583236|ref|YP_003481702.1| - 0.059 13.1 0.1 0.51 10.1 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) THOC7 PF05615.13 gi|289583236|ref|YP_003481702.1| - 0.06 13.6 7.4 17 5.7 7.1 3.3 1 1 0 1 1 1 0 Tho complex subunit 7 MitMem_reg PF13012.6 gi|289583236|ref|YP_003481702.1| - 0.062 13.7 1.2 16 6.0 0.3 2.8 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function Mating_N PF12731.7 gi|289583236|ref|YP_003481702.1| - 0.069 13.3 9.1 0.09 12.9 2.5 3.0 2 0 0 2 2 2 0 Mating-type protein beta 1 ATG16 PF08614.11 gi|289583236|ref|YP_003481702.1| - 0.084 13.1 27.0 0.19 11.9 13.9 3.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) BST2 PF16716.5 gi|289583236|ref|YP_003481702.1| - 0.099 13.2 3.4 13 6.5 0.1 3.3 1 1 2 3 3 2 0 Bone marrow stromal antigen 2 DUF3450 PF11932.8 gi|289583236|ref|YP_003481702.1| - 0.11 11.8 17.5 0.11 11.8 0.9 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) CCDC144C PF14915.6 gi|289583236|ref|YP_003481702.1| - 0.12 11.4 12.7 0.77 8.8 2.1 3.0 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region SHE3 PF17078.5 gi|289583236|ref|YP_003481702.1| - 0.14 11.8 4.5 0.24 11.1 3.7 1.6 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 FH2 PF02181.23 gi|289583236|ref|YP_003481702.1| - 0.14 11.2 5.1 1.4 8.0 0.6 2.7 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF2968 PF11180.8 gi|289583236|ref|YP_003481702.1| - 0.19 11.3 3.3 12 5.5 0.1 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2968) Atg14 PF10186.9 gi|289583236|ref|YP_003481702.1| - 0.2 10.7 0.0 6.8 5.7 0.0 2.1 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Prefoldin PF02996.17 gi|289583236|ref|YP_003481702.1| - 0.22 11.5 6.8 1.5 8.7 0.1 4.2 1 1 3 5 5 5 0 Prefoldin subunit Img2 PF05046.14 gi|289583236|ref|YP_003481702.1| - 0.23 11.8 1.1 13 6.2 0.5 3.4 1 1 1 3 3 2 0 Mitochondrial large subunit ribosomal protein (Img2) DUF677 PF05055.12 gi|289583236|ref|YP_003481702.1| - 0.28 10.0 7.7 0.37 9.6 4.3 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF677) TBCC_N PF16752.5 gi|289583236|ref|YP_003481702.1| - 0.39 11.2 6.2 6.9 7.2 0.2 3.8 1 1 3 4 4 4 0 Tubulin-specific chaperone C N-terminal domain Fzo_mitofusin PF04799.13 gi|289583236|ref|YP_003481702.1| - 0.91 9.1 4.9 8.1 6.0 0.5 3.3 1 1 1 3 3 3 0 fzo-like conserved region JIP_LZII PF16471.5 gi|289583236|ref|YP_003481702.1| - 0.91 9.7 8.8 37 4.6 0.5 4.4 1 1 4 5 5 5 0 JNK-interacting protein leucine zipper II Bacillus_HBL PF05791.11 gi|289583236|ref|YP_003481702.1| - 1.4 8.7 8.2 0.76 9.6 0.8 3.1 2 1 2 4 4 3 0 Bacillus haemolytic enterotoxin (HBL) Lectin_N PF03954.14 gi|289583236|ref|YP_003481702.1| - 1.4 8.7 7.8 5.3 6.8 2.7 3.1 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain EMP24_GP25L PF01105.24 gi|289583236|ref|YP_003481702.1| - 1.4 8.8 10.5 19 5.1 0.3 3.8 1 1 2 3 3 3 0 emp24/gp25L/p24 family/GOLD DUF4795 PF16043.5 gi|289583236|ref|YP_003481702.1| - 1.4 8.4 23.0 0.0077 15.9 12.2 2.6 2 1 0 2 2 1 0 Domain of unknown function (DUF4795) End3 PF12761.7 gi|289583236|ref|YP_003481702.1| - 1.5 8.9 19.6 7 6.8 0.3 4.3 1 1 3 4 4 4 0 Actin cytoskeleton-regulatory complex protein END3 SlyX PF04102.12 gi|289583236|ref|YP_003481702.1| - 1.8 9.2 15.0 9.3 7.0 0.3 5.0 1 1 4 5 5 5 0 SlyX Sec3_C PF09763.9 gi|289583236|ref|YP_003481702.1| - 1.8 6.8 13.5 0.28 9.5 3.4 2.8 2 1 1 3 3 3 0 Exocyst complex component Sec3 HIP1_clath_bdg PF16515.5 gi|289583236|ref|YP_003481702.1| - 7.2 7.3 11.4 23 5.6 1.8 4.1 1 1 3 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Fez1 PF06818.15 gi|289583236|ref|YP_003481702.1| - 8.7 6.7 20.3 1.1 9.6 0.8 3.5 2 1 1 3 3 2 0 Fez1 Phage_integrase PF00589.22 gi|289583238|ref|YP_003481704.1| - 5.6e-17 62.1 0.0 9.6e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|289583238|ref|YP_003481704.1| - 3.3e-08 33.7 0.1 1.7e-07 31.4 0.1 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|289583238|ref|YP_003481704.1| - 7.9e-06 26.3 0.1 0.072 13.6 0.0 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|289583238|ref|YP_003481704.1| - 0.14 12.5 0.0 0.47 10.8 0.0 1.8 1 1 0 1 1 1 0 Phage integrase SAM-like domain DUF4880 PF16220.5 gi|289583238|ref|YP_003481704.1| - 0.15 12.0 0.1 16 5.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4880) Phage_int_SAM_3 PF14659.6 gi|289583238|ref|YP_003481704.1| - 0.2 12.0 0.1 49 4.3 0.0 3.4 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain zf-C2H2 PF00096.26 gi|289583240|ref|YP_003481706.1| - 0.0033 17.8 5.0 0.042 14.3 0.3 3.2 3 0 0 3 3 3 1 Zinc finger, C2H2 type HNH_5 PF14279.6 gi|289583240|ref|YP_003481706.1| - 0.0035 17.2 2.9 0.21 11.5 1.0 2.3 2 0 0 2 2 2 1 HNH endonuclease FYVE PF01363.21 gi|289583240|ref|YP_003481706.1| - 0.044 13.9 3.8 0.049 13.8 3.8 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C3HC4_2 PF13923.6 gi|289583240|ref|YP_003481706.1| - 0.11 12.4 0.3 0.11 12.4 0.3 2.3 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|289583240|ref|YP_003481706.1| - 0.15 12.1 7.8 1.9 8.6 7.7 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.6 gi|289583240|ref|YP_003481706.1| - 0.27 12.2 8.6 1.1 10.3 1.1 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|289583240|ref|YP_003481706.1| - 0.5 10.4 10.0 0.51 10.4 1.0 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Rhodanese_C PF12368.8 gi|289583240|ref|YP_003481706.1| - 0.52 10.7 6.9 1.8 9.0 7.1 1.7 1 1 0 1 1 1 0 Rhodanase C-terminal zf-H2C2_2 PF13465.6 gi|289583240|ref|YP_003481706.1| - 0.56 10.7 5.4 34 5.1 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|289583240|ref|YP_003481706.1| - 0.64 9.7 7.8 0.41 10.3 0.4 2.8 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 gi|289583240|ref|YP_003481706.1| - 0.86 10.0 4.3 4 7.9 0.5 2.6 2 1 0 2 2 2 0 Zinc-finger double-stranded RNA-binding C1_2 PF03107.16 gi|289583240|ref|YP_003481706.1| - 1.6 9.1 8.3 0.14 12.5 2.5 2.0 1 1 1 2 2 2 0 C1 domain Zn-ribbon_8 PF09723.10 gi|289583240|ref|YP_003481706.1| - 8.8 6.5 9.5 9 6.5 2.0 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Lyase_1 PF00206.20 gi|289583241|ref|YP_003481707.1| - 1.1e-107 360.0 0.1 1.5e-107 359.7 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|289583241|ref|YP_003481707.1| - 1.2e-21 76.9 0.5 1.2e-21 76.9 0.5 2.1 2 0 0 2 2 2 1 Fumarase C C-terminus bPH_2 PF03703.14 gi|289583242|ref|YP_003481708.1| - 9.5e-51 169.9 3.2 1.5e-20 73.2 0.3 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|289583242|ref|YP_003481708.1| - 1.9e-06 27.9 0.0 0.008 16.2 0.0 3.1 3 0 0 3 3 3 2 Bacterial PH domain PRP3 PF08572.10 gi|289583242|ref|YP_003481708.1| - 0.0028 17.4 0.2 0.004 16.9 0.2 1.1 1 0 0 1 1 1 1 pre-mRNA processing factor 3 (PRP3) bPH_3 PF14470.6 gi|289583242|ref|YP_003481708.1| - 0.011 16.0 0.0 3.5 8.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial PH domain bPH_2 PF03703.14 gi|289583243|ref|YP_003481709.1| - 4.4e-14 52.4 0.0 6.4e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain HERV-K_env_2 PF13804.6 gi|289583243|ref|YP_003481709.1| - 0.023 14.5 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Retro-transcribing viruses envelope glycoprotein DUF4271 PF14093.6 gi|289583243|ref|YP_003481709.1| - 0.15 11.9 0.5 0.19 11.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) DUF2613 PF11021.8 gi|289583243|ref|YP_003481709.1| - 0.87 9.7 8.7 0.6 10.3 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF5510 PF17629.2 gi|289583243|ref|YP_003481709.1| - 0.95 9.4 4.5 2.8 7.9 4.5 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5510) BolA PF01722.18 gi|289583244|ref|YP_003481710.1| - 9.2e-19 67.5 0.1 1.1e-18 67.3 0.1 1.1 1 0 0 1 1 1 1 BolA-like protein tRNA-synt_1e PF01406.19 gi|289583246|ref|YP_003481712.1| - 1.6e-107 359.4 0.0 3.2e-106 355.1 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|289583246|ref|YP_003481712.1| - 4.1e-13 49.6 0.3 1.4e-12 47.9 0.1 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|289583246|ref|YP_003481712.1| - 3.5e-11 42.5 0.0 5.8e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|289583246|ref|YP_003481712.1| - 3.6e-08 32.7 0.0 0.00055 19.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|289583246|ref|YP_003481712.1| - 0.0026 16.1 0.1 0.036 12.3 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 gi|289583246|ref|YP_003481712.1| - 0.023 13.7 0.1 0.084 11.8 0.0 2.0 3 0 0 3 3 3 0 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|289583246|ref|YP_003481712.1| - 0.041 12.8 0.0 0.091 11.6 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.19 gi|289583246|ref|YP_003481712.1| - 0.044 13.5 0.6 0.097 12.4 0.1 1.9 2 0 0 2 2 2 0 UvrB/uvrC motif GHMP_kinases_C PF08544.13 gi|289583246|ref|YP_003481712.1| - 0.072 13.5 0.3 19 5.7 0.0 3.1 3 0 0 3 3 3 0 GHMP kinases C terminal FTO_CTD PF12934.7 gi|289583246|ref|YP_003481712.1| - 0.079 12.7 0.8 0.2 11.4 0.8 1.6 1 1 0 1 1 1 0 FTO C-terminal domain SPP PF06550.11 gi|289583248|ref|YP_003481714.1| - 5.8e-89 298.3 14.8 7.9e-89 297.9 14.8 1.1 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Presenilin PF01080.17 gi|289583248|ref|YP_003481714.1| - 3.9e-09 35.8 3.3 9e-05 21.4 5.5 2.2 2 0 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.13 gi|289583248|ref|YP_003481714.1| - 8.6e-05 22.2 10.1 0.00088 18.9 4.8 2.4 2 1 0 2 2 2 2 Signal peptide peptidase Ctr PF04145.15 gi|289583248|ref|YP_003481714.1| - 0.55 10.9 4.6 0.37 11.4 0.8 2.6 3 1 0 3 3 3 0 Ctr copper transporter family Packaging_FI PF14000.6 gi|289583248|ref|YP_003481714.1| - 1 9.8 2.9 1.7 9.1 2.9 1.3 1 0 0 1 1 1 0 DNA packaging protein FI Gar1 PF04410.14 gi|289583249|ref|YP_003481715.1| - 9.7e-06 25.4 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|289583250|ref|YP_003481716.1| - 4e-24 85.4 0.0 4.6e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.18 gi|289583251|ref|YP_003481717.1| - 3.4e-26 92.3 4.9 7.1e-26 91.2 4.9 1.5 1 1 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|289583252|ref|YP_003481718.1| - 2.6e-87 292.8 41.6 7.8e-87 291.2 39.9 1.9 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|289583253|ref|YP_003481719.1| - 1.1e-33 116.6 0.0 1.9e-33 115.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289583253|ref|YP_003481719.1| - 1.9e-09 37.7 1.6 2.4e-05 24.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|289583253|ref|YP_003481719.1| - 1.2e-06 29.2 0.0 1.9e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|289583253|ref|YP_003481719.1| - 6.9e-05 22.4 0.0 0.0004 19.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289583253|ref|YP_003481719.1| - 0.00012 21.7 0.1 0.00029 20.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|289583253|ref|YP_003481719.1| - 0.0013 18.5 0.0 0.014 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|289583253|ref|YP_003481719.1| - 0.0013 19.2 0.6 0.0045 17.4 0.6 2.1 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|289583253|ref|YP_003481719.1| - 0.0013 18.0 0.0 0.0071 15.7 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|289583253|ref|YP_003481719.1| - 0.011 15.9 0.8 0.059 13.5 0.1 2.2 1 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|289583253|ref|YP_003481719.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|289583253|ref|YP_003481719.1| - 0.013 15.9 1.0 0.032 14.6 0.0 2.1 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|289583253|ref|YP_003481719.1| - 0.019 15.2 0.5 0.12 12.6 0.5 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|289583253|ref|YP_003481719.1| - 0.023 14.6 0.0 0.062 13.2 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|289583253|ref|YP_003481719.1| - 0.031 14.3 0.1 0.073 13.2 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|289583253|ref|YP_003481719.1| - 0.033 13.8 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain F420_oxidored PF03807.17 gi|289583253|ref|YP_003481719.1| - 0.085 13.5 0.1 0.33 11.5 0.1 2.1 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent MukB PF04310.12 gi|289583253|ref|YP_003481719.1| - 0.12 12.2 0.4 0.31 10.8 0.1 1.8 2 0 0 2 2 2 0 MukB N-terminal DUF2813 PF11398.8 gi|289583253|ref|YP_003481719.1| - 0.19 11.0 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) GatB_N PF02934.15 gi|289583254|ref|YP_003481720.1| - 6.1e-66 222.6 0.0 9.9e-66 221.9 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|289583254|ref|YP_003481720.1| - 6.5e-21 74.8 0.0 1.1e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|289583254|ref|YP_003481720.1| - 1.1e-13 51.2 0.0 2.1e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|289583254|ref|YP_003481720.1| - 0.0095 16.0 0.3 0.023 14.7 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein SpoU_methylase PF00588.19 gi|289583255|ref|YP_003481721.1| - 1.3e-27 96.7 0.0 1.8e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Lactamase_B_6 PF16661.5 gi|289583255|ref|YP_003481721.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013922.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013922.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013922.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013922.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:16:32 2019 # [ok]