# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SIS PF01380.17 gi|312136231|ref|YP_004003568.1| - 2.7e-56 188.7 1.0 1.7e-29 102.0 0.6 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|312136231|ref|YP_004003568.1| - 2.6e-25 88.9 0.0 4.9e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|312136231|ref|YP_004003568.1| - 2.3e-21 75.9 0.1 1.1e-16 60.5 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|312136231|ref|YP_004003568.1| - 4e-21 75.0 0.0 1.2e-20 73.4 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|312136231|ref|YP_004003568.1| - 9.3e-07 27.7 0.0 1.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Na_Ca_ex PF01699.19 gi|312136231|ref|YP_004003568.1| - 0.11 12.0 0.2 0.61 9.6 0.2 1.9 1 1 1 2 2 2 0 Sodium/calcium exchanger protein Cdc6_C PF09079.6 gi|312136232|ref|YP_004003569.1| - 1.7e-20 72.5 0.4 1.7e-20 72.5 0.3 1.9 2 0 0 2 2 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|312136232|ref|YP_004003569.1| - 2.4e-11 43.8 0.0 5.1e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|312136232|ref|YP_004003569.1| - 2.1e-10 40.9 0.0 1.8e-09 37.8 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|312136232|ref|YP_004003569.1| - 1.2e-08 35.2 0.0 2.3e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|312136232|ref|YP_004003569.1| - 5.1e-05 22.2 0.0 7.9e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|312136232|ref|YP_004003569.1| - 9.6e-05 22.1 0.3 0.00026 20.7 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|312136232|ref|YP_004003569.1| - 0.001 18.7 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|312136232|ref|YP_004003569.1| - 0.0024 18.6 1.6 0.014 16.2 1.1 2.3 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|312136232|ref|YP_004003569.1| - 0.0028 17.1 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|312136232|ref|YP_004003569.1| - 0.0032 16.9 0.0 0.019 14.4 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain DUF815 PF05673.8 gi|312136232|ref|YP_004003569.1| - 0.0041 16.0 0.0 0.0076 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|312136232|ref|YP_004003569.1| - 0.0046 17.2 0.2 0.015 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|312136232|ref|YP_004003569.1| - 0.0062 16.2 0.1 0.019 14.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|312136232|ref|YP_004003569.1| - 0.0077 15.8 0.8 0.054 13.1 0.0 2.5 4 0 0 4 4 3 1 Bacterial dnaA protein Rep_3 PF01051.16 gi|312136232|ref|YP_004003569.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 Initiator Replication protein ResIII PF04851.10 gi|312136232|ref|YP_004003569.1| - 0.015 15.1 0.3 0.03 14.1 0.0 1.6 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit DUF87 PF01935.12 gi|312136232|ref|YP_004003569.1| - 0.02 14.6 0.6 0.69 9.6 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|312136232|ref|YP_004003569.1| - 0.022 13.6 0.0 0.046 12.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Torsin PF06309.6 gi|312136232|ref|YP_004003569.1| - 0.023 14.6 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Torsin KaiC PF06745.8 gi|312136232|ref|YP_004003569.1| - 0.035 13.2 0.0 0.072 12.1 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_24 PF13479.1 gi|312136232|ref|YP_004003569.1| - 0.044 13.3 0.7 0.1 12.1 0.5 1.6 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|312136232|ref|YP_004003569.1| - 0.054 13.4 0.0 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|312136232|ref|YP_004003569.1| - 0.06 13.5 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|312136232|ref|YP_004003569.1| - 0.084 12.7 0.3 0.25 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|312136232|ref|YP_004003569.1| - 0.14 11.5 0.0 0.32 10.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|312136232|ref|YP_004003569.1| - 0.16 12.2 3.1 0.62 10.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|312136232|ref|YP_004003569.1| - 0.2 11.1 3.5 2.9 7.3 0.3 2.7 2 1 1 3 3 3 0 DEAD/DEAH box helicase OTCace_N PF02729.16 gi|312136233|ref|YP_004003570.1| - 7.9e-47 158.4 0.0 1.4e-46 157.6 0.0 1.4 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|312136233|ref|YP_004003570.1| - 8.5e-37 126.4 0.0 1.6e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Class_IIIsignal PF04021.7 gi|312136234|ref|YP_004003571.1| - 0.00033 20.2 6.6 0.00048 19.7 4.5 1.3 1 0 0 1 1 1 1 Class III signal peptide Rib_5-P_isom_A PF06026.9 gi|312136235|ref|YP_004003572.1| - 4.1e-67 224.8 0.1 5.3e-67 224.4 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|312136235|ref|YP_004003572.1| - 6.4e-08 32.4 0.0 0.00013 21.7 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|312136235|ref|YP_004003572.1| - 0.013 14.4 0.0 0.023 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain UPF0179 PF03684.8 gi|312136236|ref|YP_004003573.1| - 7e-48 161.8 5.9 7.8e-48 161.6 4.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) TMEM95 PF15203.1 gi|312136236|ref|YP_004003573.1| - 0.099 12.0 0.8 0.12 11.8 0.6 1.3 1 0 0 1 1 1 0 TMEM95 family DDE_Tnp_1_6 PF13751.1 gi|312136236|ref|YP_004003573.1| - 1.6 8.7 9.3 0.47 10.4 1.3 2.2 1 1 1 2 2 2 0 Transposase DDE domain Cas_Cas4 PF01930.12 gi|312136236|ref|YP_004003573.1| - 9.1 6.1 8.6 19 5.1 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF83 Fe-ADH_2 PF13685.1 gi|312136237|ref|YP_004003574.1| - 4.7e-73 245.5 5.2 5e-73 245.4 3.1 1.3 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|312136237|ref|YP_004003574.1| - 9.5e-27 93.5 2.7 1.9e-26 92.6 1.9 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|312136237|ref|YP_004003574.1| - 1.3e-10 40.6 0.4 2.9e-10 39.5 0.3 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase QRPTase_C PF01729.14 gi|312136238|ref|YP_004003575.1| - 7e-21 74.4 0.0 9.9e-21 73.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|312136238|ref|YP_004003575.1| - 3.7e-13 49.1 0.0 7.1e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|312136238|ref|YP_004003575.1| - 0.0005 19.2 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NAPRTase PF04095.11 gi|312136238|ref|YP_004003575.1| - 0.037 13.3 0.0 1.2 8.3 0.0 2.5 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family PcrB PF01884.12 gi|312136238|ref|YP_004003575.1| - 0.08 12.1 0.0 0.17 11.1 0.0 1.4 1 1 0 1 1 1 0 PcrB family E1-E2_ATPase PF00122.15 gi|312136239|ref|YP_004003576.1| - 2.7e-58 196.7 6.4 2.7e-58 196.7 4.5 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|312136239|ref|YP_004003576.1| - 4.5e-25 89.3 0.0 7.2e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|312136239|ref|YP_004003576.1| - 1e-20 72.9 0.0 2.3e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|312136239|ref|YP_004003576.1| - 4.9e-18 65.9 0.1 9.4e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|312136239|ref|YP_004003576.1| - 1.1e-12 47.8 13.5 1.1e-12 47.8 9.4 2.6 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase_like2 PF13246.1 gi|312136239|ref|YP_004003576.1| - 5.9e-10 38.9 0.0 1.7e-09 37.4 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit NfeD PF01957.13 gi|312136239|ref|YP_004003576.1| - 0.0073 16.4 0.3 0.0073 16.4 0.2 2.7 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding Hydrolase_3 PF08282.7 gi|312136239|ref|YP_004003576.1| - 0.015 14.8 3.9 0.24 10.9 0.0 3.2 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Rick_17kDa_Anti PF05433.10 gi|312136240|ref|YP_004003577.1| - 0.00032 20.3 0.3 0.00066 19.2 0.2 1.6 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|312136240|ref|YP_004003577.1| - 0.053 13.0 1.4 0.053 13.0 0.9 2.2 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|312136240|ref|YP_004003577.1| - 0.2 11.2 5.2 0.56 9.8 3.0 2.0 1 1 0 1 1 1 0 Glycine zipper CoA_binding PF02629.14 gi|312136241|ref|YP_004003578.1| - 4.4e-27 94.4 1.9 5.3e-26 90.9 0.6 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|312136241|ref|YP_004003578.1| - 2.9e-18 65.9 0.1 5e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|312136241|ref|YP_004003578.1| - 6.4e-13 48.5 0.0 1.2e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|312136241|ref|YP_004003578.1| - 2.1e-05 24.6 0.0 4.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|312136241|ref|YP_004003578.1| - 0.00028 21.4 0.3 0.00066 20.1 0.2 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF2325 PF10087.4 gi|312136241|ref|YP_004003578.1| - 0.0016 18.2 0.0 0.047 13.5 0.1 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2325) IlvN PF07991.7 gi|312136241|ref|YP_004003578.1| - 0.018 14.4 0.3 0.038 13.3 0.2 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ATP-synt_F PF01990.12 gi|312136241|ref|YP_004003578.1| - 0.033 14.5 0.6 1.1 9.6 0.0 2.7 2 1 0 2 2 2 0 ATP synthase (F/14-kDa) subunit NAD_binding_7 PF13241.1 gi|312136241|ref|YP_004003578.1| - 0.12 12.6 0.9 8.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding HMG-CoA_red PF00368.13 gi|312136242|ref|YP_004003579.1| - 2.8e-153 509.9 5.3 3.2e-153 509.8 3.7 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase VIT1 PF01988.14 gi|312136243|ref|YP_004003580.1| - 6.6e-27 94.3 16.1 2.4e-26 92.5 11.2 1.7 1 1 0 1 1 1 1 VIT family YIEGIA PF14045.1 gi|312136243|ref|YP_004003580.1| - 0.014 14.0 1.4 0.022 13.3 0.1 1.9 1 1 1 2 2 2 0 YIEGIA protein TCR_zetazeta PF11628.3 gi|312136243|ref|YP_004003580.1| - 0.048 13.1 0.6 0.11 11.9 0.4 1.6 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain HTH_12 PF08461.5 gi|312136243|ref|YP_004003580.1| - 0.092 12.4 0.1 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4231 PF14015.1 gi|312136243|ref|YP_004003580.1| - 0.45 10.5 3.9 3.1 7.8 1.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) MFS_1 PF07690.11 gi|312136243|ref|YP_004003580.1| - 0.5 9.0 13.1 1.5 7.4 0.5 2.0 2 0 0 2 2 2 0 Major Facilitator Superfamily DUF4190 PF13828.1 gi|312136243|ref|YP_004003580.1| - 9 5.9 11.8 4.7 6.8 3.8 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) DUF116 PF01976.12 gi|312136244|ref|YP_004003581.1| - 1.5e-44 151.2 5.3 1.9e-44 150.9 3.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 zinc_ribbon_2 PF13240.1 gi|312136244|ref|YP_004003581.1| - 0.091 12.2 5.7 0.26 10.8 4.0 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Wzy_C PF04932.10 gi|312136244|ref|YP_004003581.1| - 0.093 12.5 2.8 0.15 11.8 1.9 1.2 1 0 0 1 1 1 0 O-Antigen ligase HypA PF01155.14 gi|312136246|ref|YP_004003583.1| - 0.00096 18.8 4.0 0.001 18.7 2.8 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-LYAR PF08790.6 gi|312136246|ref|YP_004003583.1| - 0.03 14.0 0.7 0.077 12.7 0.1 1.9 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.5 gi|312136246|ref|YP_004003583.1| - 0.042 13.7 5.8 0.59 10.1 4.0 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|312136246|ref|YP_004003583.1| - 0.043 13.5 6.4 0.043 13.5 4.5 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.9 gi|312136246|ref|YP_004003583.1| - 0.048 13.2 3.8 0.099 12.3 2.6 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS RE_MamI PF09567.5 gi|312136246|ref|YP_004003583.1| - 0.07 12.1 1.3 0.069 12.1 0.9 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease zf-RING_3 PF14369.1 gi|312136246|ref|YP_004003583.1| - 0.11 12.5 1.0 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger DZR PF12773.2 gi|312136246|ref|YP_004003583.1| - 0.15 11.9 5.5 0.17 11.6 3.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|312136246|ref|YP_004003583.1| - 0.15 11.6 9.9 1.2 8.7 0.6 2.9 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|312136246|ref|YP_004003583.1| - 0.23 11.1 10.3 1.2 8.8 0.7 2.9 2 1 1 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|312136246|ref|YP_004003583.1| - 0.43 10.2 10.7 1.1 8.9 1.9 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|312136246|ref|YP_004003583.1| - 0.46 10.0 4.0 1.9 8.0 0.1 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|312136246|ref|YP_004003583.1| - 2.3 8.2 6.7 2.6 8.1 1.4 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-trcl PF13451.1 gi|312136246|ref|YP_004003583.1| - 3.5 7.3 8.7 5.4 6.7 0.3 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain Zn_Tnp_IS1 PF03811.8 gi|312136246|ref|YP_004003583.1| - 3.6 7.1 6.7 0.21 11.0 0.7 1.9 2 0 0 2 2 2 0 InsA N-terminal domain DUF3797 PF12677.2 gi|312136246|ref|YP_004003583.1| - 4.5 6.9 10.2 1.1 8.9 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|312136246|ref|YP_004003583.1| - 9.3 6.1 8.2 2 8.2 0.8 2.2 1 1 2 3 3 3 0 Transposase zinc-ribbon domain DUF4600 PF15372.1 gi|312136247|ref|YP_004003584.1| - 0.0079 16.4 0.8 0.0082 16.3 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4600) Tic22 PF04278.7 gi|312136247|ref|YP_004003584.1| - 0.12 11.5 0.0 0.12 11.5 0.0 1.0 1 0 0 1 1 1 0 Tic22-like family Prefoldin_2 PF01920.15 gi|312136247|ref|YP_004003584.1| - 3.5 7.4 7.8 4.3 7.1 5.4 1.1 1 0 0 1 1 1 0 Prefoldin subunit BacA PF02673.13 gi|312136249|ref|YP_004003586.1| - 2e-75 253.3 11.8 2.4e-75 253.0 8.2 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA PRA1 PF03208.14 gi|312136249|ref|YP_004003586.1| - 1.7 7.9 6.2 2.2 7.5 0.0 2.9 1 1 1 3 3 3 0 PRA1 family protein Phage_integrase PF00589.17 gi|312136250|ref|YP_004003587.1| - 4.6e-45 153.3 2.4 4.6e-45 153.3 1.7 1.7 2 0 0 2 2 2 1 Phage integrase family Integrase_1 PF12835.2 gi|312136250|ref|YP_004003587.1| - 3.6e-07 30.1 0.7 7.5e-07 29.0 0.5 1.5 1 0 0 1 1 1 1 Integrase Phage_int_SAM_4 PF13495.1 gi|312136250|ref|YP_004003587.1| - 3.1e-06 27.4 3.6 1.9e-05 24.9 0.4 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|312136250|ref|YP_004003587.1| - 7.6e-05 22.7 1.5 0.002 18.2 0.2 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain RGS PF00615.14 gi|312136250|ref|YP_004003587.1| - 0.068 13.2 1.1 7 6.7 0.1 2.6 2 0 0 2 2 2 0 Regulator of G protein signaling domain BcrAD_BadFG PF01869.15 gi|312136251|ref|YP_004003588.1| - 2.8e-40 138.3 0.3 3.2e-40 138.1 0.2 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.15 gi|312136251|ref|YP_004003588.1| - 0.027 14.3 0.3 0.12 12.1 0.1 2.1 2 1 0 2 2 2 0 ROK family DUF460 PF04312.8 gi|312136251|ref|YP_004003588.1| - 0.073 12.6 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF460) FtsA PF14450.1 gi|312136251|ref|YP_004003588.1| - 0.63 9.8 2.8 0.7 9.7 0.7 1.9 2 1 0 2 2 2 0 Cell division protein FtsA NTPase_I-T PF01931.13 gi|312136252|ref|YP_004003589.1| - 1.4e-57 194.0 0.1 2.1e-57 193.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF84 CTP_transf_2 PF01467.21 gi|312136252|ref|YP_004003589.1| - 3e-17 63.1 0.3 8.9e-17 61.5 0.0 1.9 2 1 0 2 2 2 1 Cytidylyltransferase FAD_syn PF06574.7 gi|312136252|ref|YP_004003589.1| - 0.0091 15.6 0.4 0.026 14.1 0.1 1.9 2 0 0 2 2 2 1 FAD synthetase DUF3798 PF12683.2 gi|312136252|ref|YP_004003589.1| - 0.11 11.5 3.6 0.11 11.5 1.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3798) DUF4282 PF14110.1 gi|312136253|ref|YP_004003590.1| - 0.096 12.8 0.7 0.11 12.7 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) PsbI PF02532.9 gi|312136253|ref|YP_004003590.1| - 3.1 7.5 4.8 2 8.0 2.1 1.6 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Radical_SAM PF04055.16 gi|312136254|ref|YP_004003591.1| - 3.2e-15 56.7 0.0 9.6e-15 55.1 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|312136254|ref|YP_004003591.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain Aminotran_1_2 PF00155.16 gi|312136255|ref|YP_004003592.1| - 7.7e-77 258.6 0.0 8.9e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|312136255|ref|YP_004003592.1| - 3.8e-10 39.3 0.1 8e-10 38.2 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|312136255|ref|YP_004003592.1| - 1.6e-09 37.0 0.0 2.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|312136255|ref|YP_004003592.1| - 1.3e-07 30.3 0.1 2.1e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|312136255|ref|YP_004003592.1| - 1.9e-05 23.9 0.0 2.9e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase RNase_Zc3h12a PF11977.3 gi|312136255|ref|YP_004003592.1| - 0.017 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF1932 PF09130.6 gi|312136256|ref|YP_004003593.1| - 2.3e-17 62.4 0.0 3.9e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1932) F420_oxidored PF03807.12 gi|312136256|ref|YP_004003593.1| - 1.2e-08 35.2 0.0 3.2e-08 33.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|312136256|ref|YP_004003593.1| - 1.9e-05 24.5 0.0 5.3e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|312136256|ref|YP_004003593.1| - 0.00015 20.9 0.1 0.00032 19.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|312136256|ref|YP_004003593.1| - 0.00015 22.2 0.0 0.00032 21.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|312136256|ref|YP_004003593.1| - 0.00041 20.8 0.8 0.087 13.3 0.2 2.4 2 0 0 2 2 2 1 CoA binding domain Saccharop_dh PF03435.13 gi|312136256|ref|YP_004003593.1| - 0.005 15.8 0.0 0.0068 15.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|312136256|ref|YP_004003593.1| - 0.0065 16.3 0.2 0.038 13.9 0.1 2.1 1 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.15 gi|312136256|ref|YP_004003593.1| - 0.0097 16.0 0.1 0.054 13.5 0.0 2.0 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|312136256|ref|YP_004003593.1| - 0.089 12.5 0.1 0.99 9.1 0.0 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PYNP_C PF07831.8 gi|312136256|ref|YP_004003593.1| - 0.11 11.9 0.2 0.26 10.7 0.1 1.6 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain Trypsin_2 PF13365.1 gi|312136257|ref|YP_004003594.1| - 1e-06 28.7 0.0 2.1e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|312136257|ref|YP_004003594.1| - 0.00077 19.1 0.1 0.0062 16.1 0.0 2.0 1 1 1 2 2 2 1 Trypsin Peptidase_S32 PF05579.8 gi|312136257|ref|YP_004003594.1| - 0.0037 16.3 0.3 0.017 14.0 0.2 1.8 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Peptidase_S55 PF05580.7 gi|312136257|ref|YP_004003594.1| - 0.0046 16.4 0.6 0.01 15.2 0.1 1.7 2 0 0 2 2 2 1 SpoIVB peptidase S55 Peptidase_S29 PF02907.10 gi|312136257|ref|YP_004003594.1| - 0.0063 16.0 0.0 0.015 14.8 0.0 1.6 1 1 1 2 2 2 1 Hepatitis C virus NS3 protease Peptidase_S7 PF00949.16 gi|312136257|ref|YP_004003594.1| - 0.038 13.4 0.1 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease DEAD PF00270.24 gi|312136258|ref|YP_004003595.1| - 3.8e-28 98.0 0.0 9.9e-28 96.7 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|312136258|ref|YP_004003595.1| - 1.3e-13 50.5 0.0 3.7e-13 49.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|312136258|ref|YP_004003595.1| - 2.1e-09 37.4 3.0 2.1e-08 34.2 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|312136258|ref|YP_004003595.1| - 0.00014 21.2 0.0 0.00045 19.5 0.0 1.8 1 1 0 1 1 1 1 SecA DEAD-like domain SNF2_N PF00176.18 gi|312136258|ref|YP_004003595.1| - 0.00056 18.8 0.0 0.002 17.0 0.0 1.8 1 1 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.1 gi|312136258|ref|YP_004003595.1| - 0.063 13.2 0.4 0.82 9.6 0.0 2.7 2 1 1 3 3 3 0 Helicase C-terminal domain AMP-binding PF00501.23 gi|312136259|ref|YP_004003596.1| - 1.3e-111 372.9 0.0 1.6e-111 372.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|312136259|ref|YP_004003596.1| - 4.8e-15 56.2 0.1 1e-14 55.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Rap_GAP PF02145.10 gi|312136259|ref|YP_004003596.1| - 0.046 13.0 0.3 0.08 12.3 0.2 1.3 1 0 0 1 1 1 0 Rap/ran-GAP Cupin_2 PF07883.6 gi|312136260|ref|YP_004003597.1| - 1.2e-17 63.2 0.0 1.8e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|312136260|ref|YP_004003597.1| - 5.8e-13 48.6 0.5 8.8e-13 48.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|312136260|ref|YP_004003597.1| - 7.1e-11 41.7 0.3 9.9e-11 41.3 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.1 gi|312136260|ref|YP_004003597.1| - 1e-05 25.6 0.1 1.6e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain AraC_binding PF02311.14 gi|312136260|ref|YP_004003597.1| - 4.7e-05 23.1 0.0 6.5e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_31 PF13560.1 gi|312136260|ref|YP_004003597.1| - 0.00016 21.8 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.7 gi|312136260|ref|YP_004003597.1| - 0.00068 18.9 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.1 gi|312136260|ref|YP_004003597.1| - 0.00092 18.8 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-C_C PF11699.3 gi|312136260|ref|YP_004003597.1| - 0.0051 16.7 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_1 PF00190.17 gi|312136260|ref|YP_004003597.1| - 0.018 14.4 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|312136260|ref|YP_004003597.1| - 0.024 14.2 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|312136260|ref|YP_004003597.1| - 0.087 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Cupin RHH_1 PF01402.16 gi|312136260|ref|YP_004003597.1| - 0.1 12.5 0.4 0.26 11.2 0.3 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Ribosomal_L13e PF01294.13 gi|312136260|ref|YP_004003597.1| - 0.14 11.5 0.1 0.23 10.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L13e ATP-grasp_2 PF08442.5 gi|312136261|ref|YP_004003598.1| - 2.3e-60 203.4 1.0 2.3e-60 203.4 0.7 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|312136261|ref|YP_004003598.1| - 3.4e-17 62.4 0.3 5.5e-17 61.7 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|312136261|ref|YP_004003598.1| - 4.6e-11 42.3 0.5 5.7e-07 28.9 0.1 2.6 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.14 gi|312136261|ref|YP_004003598.1| - 2e-07 30.7 0.3 3.9e-07 29.8 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|312136261|ref|YP_004003598.1| - 1.7e-05 24.2 0.0 3.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|312136261|ref|YP_004003598.1| - 2.3e-05 23.7 0.3 7.3e-05 22.1 0.1 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|312136261|ref|YP_004003598.1| - 0.00059 19.6 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain POR PF01558.13 gi|312136262|ref|YP_004003599.1| - 3.3e-39 134.5 0.2 3.9e-39 134.3 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase YfdX PF10938.3 gi|312136262|ref|YP_004003599.1| - 0.076 12.6 0.5 0.099 12.2 0.4 1.2 1 0 0 1 1 1 0 YfdX protein TPP_enzyme_C PF02775.16 gi|312136263|ref|YP_004003600.1| - 6.1e-36 123.2 0.0 8.8e-36 122.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PPR_2 PF13041.1 gi|312136263|ref|YP_004003600.1| - 0.027 14.4 0.3 0.075 13.0 0.2 1.8 1 0 0 1 1 1 0 PPR repeat family POR_N PF01855.14 gi|312136264|ref|YP_004003601.1| - 2.1e-81 272.7 0.1 2.7e-81 272.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|312136264|ref|YP_004003601.1| - 1.2e-07 31.7 0.0 4.3e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|312136264|ref|YP_004003601.1| - 5.8e-06 25.8 0.0 1.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|312136265|ref|YP_004003602.1| - 2e-14 52.4 11.9 4.5e-07 29.1 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136265|ref|YP_004003602.1| - 1.2e-13 51.1 20.7 7.1e-11 42.3 6.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136265|ref|YP_004003602.1| - 1.7e-09 37.8 9.5 2.4e-09 37.3 6.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136265|ref|YP_004003602.1| - 6.5e-09 36.4 9.2 0.00043 20.9 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|312136265|ref|YP_004003602.1| - 1.1e-08 34.5 12.5 7.9e-05 22.3 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136265|ref|YP_004003602.1| - 2.3e-08 33.7 10.9 4.9e-08 32.7 7.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136265|ref|YP_004003602.1| - 2.3e-08 33.4 13.0 0.00039 20.1 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136265|ref|YP_004003602.1| - 4.5e-08 32.7 12.8 0.00026 20.7 1.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136265|ref|YP_004003602.1| - 8.1e-06 26.3 9.4 5e-05 23.7 0.2 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|312136265|ref|YP_004003602.1| - 1.7e-05 24.7 12.7 0.0091 16.2 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|312136265|ref|YP_004003602.1| - 2.4e-05 24.6 10.2 0.0023 18.2 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|312136265|ref|YP_004003602.1| - 0.00017 21.8 10.8 0.014 15.7 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136265|ref|YP_004003602.1| - 0.00024 21.4 15.8 0.017 15.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312136265|ref|YP_004003602.1| - 0.0017 18.3 12.6 0.026 14.5 9.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136265|ref|YP_004003602.1| - 0.0024 18.2 14.2 0.085 13.2 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF3343 PF11823.3 gi|312136265|ref|YP_004003602.1| - 0.018 14.2 0.1 0.028 13.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Fer4_11 PF13247.1 gi|312136265|ref|YP_004003602.1| - 0.021 14.7 5.5 0.3 10.9 3.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain PRY PF13765.1 gi|312136265|ref|YP_004003602.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 SPRY-associated domain Fer4_19 PF06902.6 gi|312136265|ref|YP_004003602.1| - 0.43 10.4 7.6 4.5 7.1 5.3 2.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Wyosine_form PF08608.7 gi|312136266|ref|YP_004003603.1| - 1.8e-23 82.3 0.2 3.8e-23 81.3 0.0 1.7 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|312136266|ref|YP_004003603.1| - 2.8e-20 73.1 0.7 1.4e-19 70.8 0.5 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|312136266|ref|YP_004003603.1| - 0.00027 20.9 1.6 0.00089 19.2 1.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|312136266|ref|YP_004003603.1| - 0.0023 18.0 2.6 0.0057 16.7 1.2 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain AhpC-TSA PF00578.16 gi|312136267|ref|YP_004003604.1| - 4.2e-32 110.4 0.0 5.6e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|312136267|ref|YP_004003604.1| - 2.3e-11 43.4 0.0 3e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|312136267|ref|YP_004003604.1| - 1.8e-09 37.0 0.1 3e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Desulfoferrodox PF01880.13 gi|312136268|ref|YP_004003605.1| - 2.3e-26 91.9 0.0 2.8e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin TRAM PF01938.15 gi|312136269|ref|YP_004003606.1| - 3.4e-19 68.3 1.6 4.1e-19 68.1 1.1 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|312136269|ref|YP_004003606.1| - 0.083 12.4 0.6 0.16 11.5 0.1 1.7 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) DUF3127 PF11325.3 gi|312136269|ref|YP_004003606.1| - 0.13 12.3 0.1 1 9.3 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3127) Prok-JAB PF14464.1 gi|312136270|ref|YP_004003607.1| - 3.5e-12 45.7 0.0 5.6e-12 45.1 0.0 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|312136270|ref|YP_004003607.1| - 1.1e-07 31.5 0.0 9.2e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|312136270|ref|YP_004003607.1| - 0.028 14.2 0.1 0.54 10.1 0.0 2.1 2 0 0 2 2 2 0 JAB-like toxin 1 Thg1 PF04446.7 gi|312136271|ref|YP_004003608.1| - 4.4e-28 97.6 0.0 6.2e-28 97.0 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|312136271|ref|YP_004003608.1| - 8.1e-27 93.3 2.1 1.3e-26 92.6 1.5 1.3 1 0 0 1 1 1 1 Thg1 C terminal domain BTB_2 PF02214.17 gi|312136271|ref|YP_004003608.1| - 0.068 13.3 0.1 0.62 10.2 0.0 2.2 2 0 0 2 2 2 0 BTB/POZ domain DUF108 PF01958.13 gi|312136272|ref|YP_004003609.1| - 2.5e-28 98.1 0.5 4.2e-28 97.3 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|312136272|ref|YP_004003609.1| - 2.1e-24 86.1 0.1 3.4e-24 85.4 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|312136272|ref|YP_004003609.1| - 4.9e-06 26.8 2.2 9.2e-06 26.0 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|312136272|ref|YP_004003609.1| - 1.9e-05 25.1 0.5 4.3e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|312136272|ref|YP_004003609.1| - 2e-05 24.8 0.1 3.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|312136272|ref|YP_004003609.1| - 0.00025 19.9 0.0 0.00038 19.3 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|312136272|ref|YP_004003609.1| - 0.00067 19.7 0.4 0.0013 18.8 0.3 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.15 gi|312136272|ref|YP_004003609.1| - 0.00084 19.2 0.7 0.0032 17.3 0.0 2.1 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|312136272|ref|YP_004003609.1| - 0.073 12.6 0.0 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|312136272|ref|YP_004003609.1| - 0.09 11.9 0.1 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|312136272|ref|YP_004003609.1| - 0.18 12.0 2.5 0.25 11.6 0.5 2.1 1 1 1 2 2 2 0 Putative NAD(P)-binding PRC PF05239.11 gi|312136273|ref|YP_004003610.1| - 9.4e-13 47.8 5.5 1.3e-11 44.1 3.8 2.0 1 1 0 1 1 1 1 PRC-barrel domain SpoIIIAH PF12685.2 gi|312136273|ref|YP_004003610.1| - 0.059 12.8 1.2 0.083 12.3 0.8 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein MCM PF00493.18 gi|312136274|ref|YP_004003611.1| - 6.8e-136 452.4 3.6 2.7e-67 226.9 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|312136274|ref|YP_004003611.1| - 2.7e-19 69.8 0.1 2.7e-19 69.8 0.1 3.8 5 0 0 5 5 4 1 MCM N-terminal domain LAGLIDADG_3 PF14528.1 gi|312136274|ref|YP_004003611.1| - 1.9e-18 66.4 3.4 1.1e-09 38.3 0.1 3.0 2 0 0 2 2 2 2 LAGLIDADG-like domain AAA_5 PF07728.9 gi|312136274|ref|YP_004003611.1| - 0.00012 21.8 0.6 0.0008 19.1 0.0 2.7 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|312136274|ref|YP_004003611.1| - 0.0014 17.8 0.3 0.59 9.2 0.1 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|312136274|ref|YP_004003611.1| - 0.0019 18.3 0.0 0.0019 18.3 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|312136274|ref|YP_004003611.1| - 0.0079 15.8 0.6 0.57 9.9 0.0 3.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Zn-ribbon_8 PF09723.5 gi|312136274|ref|YP_004003611.1| - 0.02 14.8 5.9 0.022 14.7 1.9 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rrf2 PF02082.15 gi|312136274|ref|YP_004003611.1| - 0.067 13.3 0.5 0.93 9.6 0.0 2.9 3 0 0 3 3 3 0 Transcriptional regulator LAGLIDADG_WhiA PF14527.1 gi|312136274|ref|YP_004003611.1| - 0.09 12.6 3.3 1.5 8.7 0.0 3.4 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain AAA_16 PF13191.1 gi|312136274|ref|YP_004003611.1| - 0.11 12.5 0.2 5.9 6.8 0.0 2.9 1 1 1 2 2 2 0 AAA ATPase domain Hint PF01079.15 gi|312136274|ref|YP_004003611.1| - 0.11 11.6 0.0 0.25 10.5 0.0 1.5 1 0 0 1 1 1 0 Hint module AAA_22 PF13401.1 gi|312136274|ref|YP_004003611.1| - 0.19 11.8 1.3 0.7 10.0 0.2 2.5 2 1 0 2 2 2 0 AAA domain DUF3133 PF11331.3 gi|312136274|ref|YP_004003611.1| - 0.93 9.1 3.7 1.2 8.8 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) eIF-5_eIF-2B PF01873.12 gi|312136275|ref|YP_004003612.1| - 5.1e-43 145.7 0.1 5.8e-43 145.5 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn-ribbon_8 PF09723.5 gi|312136275|ref|YP_004003612.1| - 0.013 15.3 0.4 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF2387 PF09526.5 gi|312136275|ref|YP_004003612.1| - 0.033 14.0 0.3 0.056 13.3 0.2 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) SUI1 PF01253.17 gi|312136275|ref|YP_004003612.1| - 0.039 13.7 0.1 0.26 11.1 0.1 2.0 1 1 0 1 1 1 0 Translation initiation factor SUI1 DUF164 PF02591.10 gi|312136275|ref|YP_004003612.1| - 0.069 12.9 0.7 0.49 10.2 0.1 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain Elf1 PF05129.8 gi|312136275|ref|YP_004003612.1| - 0.083 12.6 0.2 0.15 11.7 0.2 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|312136275|ref|YP_004003612.1| - 1.4 8.2 3.9 7.3 5.9 2.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|312136275|ref|YP_004003612.1| - 2.6 7.8 5.2 6.4 6.5 2.3 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|312136275|ref|YP_004003612.1| - 4.3 7.0 5.4 11 5.6 2.5 2.4 2 1 0 2 2 2 0 zinc-ribbon domain KdpC PF02669.10 gi|312136276|ref|YP_004003613.1| - 2.3e-58 196.9 0.0 2.7e-58 196.8 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain E1-E2_ATPase PF00122.15 gi|312136277|ref|YP_004003614.1| - 8.8e-37 126.3 1.0 8.8e-37 126.3 0.7 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|312136277|ref|YP_004003614.1| - 1.8e-34 120.0 0.9 2.8e-34 119.4 0.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|312136277|ref|YP_004003614.1| - 4.6e-16 59.5 0.0 1.5e-15 57.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|312136277|ref|YP_004003614.1| - 2.7e-06 27.1 3.9 0.00014 21.5 1.0 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase KdpA PF03814.10 gi|312136278|ref|YP_004003615.1| - 7.2e-216 717.4 35.9 8.7e-216 717.2 24.9 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit OTCace PF00185.19 gi|312136279|ref|YP_004003616.1| - 2.3e-60 203.0 0.0 3.7e-60 202.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|312136279|ref|YP_004003616.1| - 7.5e-48 161.8 0.0 1.1e-47 161.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.14 gi|312136280|ref|YP_004003617.1| - 1.2e-62 210.9 0.1 2.2e-62 210.0 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|312136280|ref|YP_004003617.1| - 8.5e-29 99.9 0.2 1.7e-28 99.0 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|312136280|ref|YP_004003617.1| - 4.3e-21 74.8 0.2 1.4e-20 73.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|312136280|ref|YP_004003617.1| - 2.7e-15 56.5 0.0 7.9e-15 55.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|312136280|ref|YP_004003617.1| - 5.5e-07 28.6 0.0 1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|312136280|ref|YP_004003617.1| - 0.0035 17.2 0.0 0.008 16.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|312136280|ref|YP_004003617.1| - 0.011 15.1 0.1 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF3213 PF11491.3 gi|312136280|ref|YP_004003617.1| - 1.6 8.6 4.5 1.6 8.6 0.1 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3213) TPP_enzyme_N PF02776.13 gi|312136281|ref|YP_004003618.1| - 3.2e-62 209.0 0.0 9.9e-59 197.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|312136281|ref|YP_004003618.1| - 2e-49 167.1 0.0 1.2e-48 164.5 0.0 2.3 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|312136281|ref|YP_004003618.1| - 5.9e-47 158.8 0.1 1.2e-46 157.8 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF2181 PF10223.4 gi|312136281|ref|YP_004003618.1| - 0.16 11.2 1.3 0.32 10.3 0.9 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2181) ALS_ss_C PF10369.4 gi|312136282|ref|YP_004003619.1| - 5.3e-33 112.5 0.3 3.4e-32 110.0 0.0 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|312136282|ref|YP_004003619.1| - 2e-22 78.7 0.3 6.3e-21 73.9 0.1 2.2 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|312136282|ref|YP_004003619.1| - 2e-15 55.8 0.2 5.5e-15 54.4 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|312136282|ref|YP_004003619.1| - 2.3e-05 24.6 0.2 4.6e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 ACT domain NIL PF09383.5 gi|312136282|ref|YP_004003619.1| - 0.004 16.6 0.0 0.22 11.1 0.0 2.4 2 1 0 2 2 2 1 NIL domain Alkyl_sulf_C PF14864.1 gi|312136282|ref|YP_004003619.1| - 0.0098 15.8 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 1 Alkyl sulfatase C-terminal ACT_6 PF13740.1 gi|312136282|ref|YP_004003619.1| - 0.01 15.5 0.1 1.4 8.7 0.0 2.8 2 1 0 2 2 2 0 ACT domain Saccharop_dh_N PF04455.7 gi|312136282|ref|YP_004003619.1| - 0.02 15.0 0.1 0.16 12.0 0.1 2.3 2 1 1 3 3 3 0 LOR/SDH bifunctional enzyme conserved region YbbR PF07949.7 gi|312136282|ref|YP_004003619.1| - 0.047 13.8 4.4 1 9.4 0.2 2.3 1 1 1 2 2 2 0 YbbR-like protein Acylphosphatase PF00708.13 gi|312136282|ref|YP_004003619.1| - 0.1 12.6 0.1 12 6.0 0.1 2.2 2 0 0 2 2 2 0 Acylphosphatase IlvN PF07991.7 gi|312136283|ref|YP_004003620.1| - 2.5e-72 241.6 0.4 3.7e-72 241.0 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|312136283|ref|YP_004003620.1| - 1.6e-57 193.4 0.7 2.3e-57 193.0 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|312136283|ref|YP_004003620.1| - 8.3e-08 32.5 0.0 2e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|312136283|ref|YP_004003620.1| - 2.4e-06 27.4 0.0 4.9e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|312136283|ref|YP_004003620.1| - 3.3e-06 26.3 0.1 5.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|312136283|ref|YP_004003620.1| - 5e-05 23.2 0.2 0.00013 21.8 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding_2 PF13380.1 gi|312136283|ref|YP_004003620.1| - 0.0082 16.3 0.2 0.21 11.7 0.0 2.6 3 0 0 3 3 3 1 CoA binding domain Shikimate_DH PF01488.15 gi|312136283|ref|YP_004003620.1| - 0.011 15.7 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CoA_binding PF02629.14 gi|312136283|ref|YP_004003620.1| - 0.012 16.1 0.1 0.097 13.1 0.0 2.4 2 0 0 2 2 2 0 CoA binding domain NAD_binding_10 PF13460.1 gi|312136283|ref|YP_004003620.1| - 0.027 14.5 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|312136283|ref|YP_004003620.1| - 0.068 13.4 0.1 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|312136283|ref|YP_004003620.1| - 0.091 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|312136283|ref|YP_004003620.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|312136283|ref|YP_004003620.1| - 0.12 12.4 0.5 0.43 10.5 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain DUF1464 PF07318.7 gi|312136284|ref|YP_004003621.1| - 1.1e-08 34.3 0.9 2e-08 33.4 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) LSM PF01423.17 gi|312136285|ref|YP_004003622.1| - 6.5e-09 35.2 1.3 1.5e-08 34.0 0.9 1.5 1 1 0 1 1 1 1 LSM domain SH3_1 PF00018.23 gi|312136285|ref|YP_004003622.1| - 0.16 11.3 0.7 1.4 8.3 0.1 2.1 1 1 1 2 2 2 0 SH3 domain NAS PF03059.11 gi|312136286|ref|YP_004003623.1| - 7.8e-27 94.1 0.7 8.6e-27 93.9 0.5 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_31 PF13847.1 gi|312136286|ref|YP_004003623.1| - 2.2e-06 27.3 0.0 4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|312136286|ref|YP_004003623.1| - 0.00026 20.6 0.0 0.00037 20.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|312136286|ref|YP_004003623.1| - 0.00041 20.9 0.0 0.00065 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF3194 PF11419.3 gi|312136287|ref|YP_004003624.1| - 1.8e-16 60.1 1.4 2.2e-16 59.8 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) ABC-3 PF00950.12 gi|312136288|ref|YP_004003625.1| - 4.5e-76 255.5 36.4 5e-76 255.3 25.2 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|312136288|ref|YP_004003625.1| - 3.3e-05 22.8 34.4 6.2e-05 21.9 23.8 1.5 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|312136289|ref|YP_004003626.1| - 6.3e-31 107.5 0.0 9.5e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136289|ref|YP_004003626.1| - 2.3e-15 57.3 0.1 1.1e-12 48.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|312136289|ref|YP_004003626.1| - 6.2e-06 25.6 0.1 0.1 11.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|312136289|ref|YP_004003626.1| - 6.5e-06 25.4 3.4 0.0032 16.5 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|312136289|ref|YP_004003626.1| - 0.0008 18.3 0.0 0.0067 15.3 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|312136289|ref|YP_004003626.1| - 0.002 18.4 1.0 0.0043 17.4 0.7 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|312136289|ref|YP_004003626.1| - 0.0028 17.0 0.2 1.6 8.0 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|312136289|ref|YP_004003626.1| - 0.0031 17.6 0.1 0.13 12.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|312136289|ref|YP_004003626.1| - 0.0063 15.9 0.1 0.059 12.7 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|312136289|ref|YP_004003626.1| - 0.0091 15.8 0.2 1.5 8.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|312136289|ref|YP_004003626.1| - 0.022 14.3 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|312136289|ref|YP_004003626.1| - 0.022 14.4 0.7 0.053 13.2 0.0 1.9 2 1 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|312136289|ref|YP_004003626.1| - 0.022 14.4 0.5 0.044 13.4 0.2 1.6 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|312136289|ref|YP_004003626.1| - 0.032 13.9 0.1 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|312136289|ref|YP_004003626.1| - 0.041 13.8 0.0 0.43 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MutS_V PF00488.16 gi|312136289|ref|YP_004003626.1| - 0.045 13.1 0.1 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_17 PF13207.1 gi|312136289|ref|YP_004003626.1| - 0.048 14.4 0.2 0.078 13.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|312136289|ref|YP_004003626.1| - 0.064 13.5 2.4 2.4 8.4 1.7 2.4 1 1 0 1 1 1 0 AAA domain HycI PF01750.13 gi|312136289|ref|YP_004003626.1| - 0.085 12.3 0.0 7.2 6.1 0.0 2.4 2 0 0 2 2 2 0 Hydrogenase maturation protease AAA_30 PF13604.1 gi|312136289|ref|YP_004003626.1| - 0.12 11.9 0.0 0.29 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|312136289|ref|YP_004003626.1| - 0.12 11.5 0.1 0.25 10.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|312136289|ref|YP_004003626.1| - 0.15 12.2 2.1 1.5 9.0 1.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TroA PF01297.12 gi|312136290|ref|YP_004003627.1| - 2.5e-75 253.0 0.6 2.9e-75 252.8 0.4 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family malic PF00390.14 gi|312136290|ref|YP_004003627.1| - 0.032 13.8 0.0 0.089 12.3 0.0 1.8 1 0 0 1 1 1 0 Malic enzyme, N-terminal domain DUSP PF06337.7 gi|312136290|ref|YP_004003627.1| - 0.11 12.8 2.7 0.16 12.3 1.2 1.7 1 1 0 1 1 1 0 DUSP domain NikR_C PF08753.6 gi|312136291|ref|YP_004003628.1| - 2.4e-13 49.7 0.9 4.8e-13 48.8 0.5 1.6 1 1 1 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|312136291|ref|YP_004003628.1| - 1e-05 25.2 0.2 2.2e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family OSCP PF00213.13 gi|312136291|ref|YP_004003628.1| - 0.00089 19.1 1.7 0.18 11.6 0.1 2.1 1 1 1 2 2 2 2 ATP synthase delta (OSCP) subunit Resolvase PF00239.16 gi|312136291|ref|YP_004003628.1| - 0.038 13.8 0.2 0.046 13.5 0.1 1.2 1 0 0 1 1 1 0 Resolvase, N terminal domain Zw10 PF06248.8 gi|312136291|ref|YP_004003628.1| - 0.041 12.0 0.2 0.042 11.9 0.1 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Condensin2nSMC PF12422.3 gi|312136291|ref|YP_004003628.1| - 0.11 12.2 0.1 0.29 10.8 0.0 1.8 1 1 0 1 1 1 0 Condensin II non structural maintenance of chromosomes subunit DUF1049 PF06305.6 gi|312136292|ref|YP_004003629.1| - 2.2 7.8 4.5 1.2 8.6 1.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Yip1 PF04893.12 gi|312136293|ref|YP_004003630.1| - 4.1e-15 55.7 26.3 5e-15 55.4 18.2 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|312136293|ref|YP_004003630.1| - 0.00024 20.8 18.6 0.00032 20.4 12.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) eRF1_1 PF03463.10 gi|312136294|ref|YP_004003631.1| - 2e-34 118.0 1.1 4e-34 117.0 0.8 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|312136294|ref|YP_004003631.1| - 2.9e-24 85.8 0.2 5.9e-24 84.9 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|312136294|ref|YP_004003631.1| - 8.7e-23 80.7 1.0 7.6e-22 77.7 0.3 2.6 2 0 0 2 2 2 1 eRF1 domain 3 SpoU_sub_bind PF08032.7 gi|312136294|ref|YP_004003631.1| - 0.075 13.2 3.9 0.12 12.6 0.1 3.0 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Glyco_transf_28 PF03033.15 gi|312136296|ref|YP_004003633.1| - 3.8e-06 26.6 0.5 3.3e-05 23.6 0.2 2.1 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|312136296|ref|YP_004003633.1| - 1.4e-05 24.9 0.1 9.6e-05 22.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|312136296|ref|YP_004003633.1| - 3.2e-05 24.0 0.1 0.0003 20.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|312136296|ref|YP_004003633.1| - 0.0054 16.1 0.8 0.0091 15.4 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|312136296|ref|YP_004003633.1| - 0.0072 15.1 0.4 0.018 13.8 0.0 1.7 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.1 gi|312136296|ref|YP_004003633.1| - 0.06 13.0 0.1 0.22 11.2 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Peptidase_M28 PF04389.12 gi|312136297|ref|YP_004003634.1| - 3e-22 79.2 0.0 5.6e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 His_biosynth PF00977.16 gi|312136298|ref|YP_004003635.1| - 3e-86 288.4 0.3 3.5e-86 288.1 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|312136298|ref|YP_004003635.1| - 7.8e-11 41.5 0.2 5.3e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|312136298|ref|YP_004003635.1| - 5.3e-10 38.9 0.0 0.00012 21.3 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|312136298|ref|YP_004003635.1| - 5.2e-08 32.2 0.0 0.00028 19.9 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|312136298|ref|YP_004003635.1| - 5.9e-08 31.8 0.1 5.8e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IMPDH PF00478.20 gi|312136298|ref|YP_004003635.1| - 5.3e-06 25.5 0.1 0.074 11.9 0.0 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|312136298|ref|YP_004003635.1| - 5.8e-05 22.1 0.2 0.064 12.2 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|312136298|ref|YP_004003635.1| - 6.1e-05 22.2 0.3 0.16 11.0 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|312136298|ref|YP_004003635.1| - 0.00025 19.9 0.1 0.17 10.6 0.0 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|312136298|ref|YP_004003635.1| - 0.00045 19.2 1.0 0.45 9.4 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF561) PcrB PF01884.12 gi|312136298|ref|YP_004003635.1| - 0.0005 19.3 2.0 0.0045 16.2 0.2 2.6 2 1 1 3 3 3 1 PcrB family Trp_syntA PF00290.15 gi|312136298|ref|YP_004003635.1| - 0.025 13.1 0.3 0.15 10.6 0.1 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain SBP_bac_3 PF00497.15 gi|312136298|ref|YP_004003635.1| - 0.1 11.8 0.0 0.25 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 OGG_N PF07934.7 gi|312136299|ref|YP_004003636.1| - 2.5e-16 59.6 0.5 4.9e-16 58.7 0.4 1.5 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|312136299|ref|YP_004003636.1| - 5.8e-13 49.0 0.0 1.2e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|312136299|ref|YP_004003636.1| - 1.1e-05 24.8 0.0 2.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|312136299|ref|YP_004003636.1| - 0.022 14.8 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain AlkA_N PF06029.6 gi|312136299|ref|YP_004003636.1| - 0.055 13.5 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 AlkA N-terminal domain MtrA PF04208.9 gi|312136301|ref|YP_004003638.1| - 1.6e-88 294.7 1.6 1.8e-88 294.5 1.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Ribosomal_L18_c PF14204.1 gi|312136301|ref|YP_004003638.1| - 0.042 14.3 0.4 0.042 14.3 0.3 2.0 3 0 0 3 3 3 0 Ribosomal L18 C-terminal region GatB_Yqey PF02637.13 gi|312136301|ref|YP_004003638.1| - 0.1 12.3 3.2 3 7.5 0.8 2.1 1 1 1 2 2 2 0 GatB domain Radical_SAM PF04055.16 gi|312136302|ref|YP_004003639.1| - 2.3e-22 79.9 0.1 6.9e-22 78.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136302|ref|YP_004003639.1| - 6.8e-12 45.6 0.1 1.6e-09 37.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136302|ref|YP_004003639.1| - 8.7e-09 35.4 0.0 8.7e-09 35.4 0.0 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain AMP-binding PF00501.23 gi|312136303|ref|YP_004003640.1| - 3.4e-98 328.7 0.0 4.3e-98 328.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|312136303|ref|YP_004003640.1| - 4.7e-21 75.5 4.5 5.2e-21 75.3 0.2 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Cpn60_TCP1 PF00118.19 gi|312136304|ref|YP_004003641.1| - 1.6e-173 577.7 16.2 1.9e-173 577.5 11.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Ribosomal_L22 PF00237.14 gi|312136304|ref|YP_004003641.1| - 0.027 14.3 0.2 0.37 10.7 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein L22p/L17e Zn_protease PF05618.6 gi|312136305|ref|YP_004003642.1| - 8.1e-21 74.1 0.1 2.1e-20 72.8 0.0 1.6 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|312136305|ref|YP_004003642.1| - 0.00073 18.9 0.1 0.0029 16.9 0.0 1.8 1 1 0 1 1 1 1 Polypeptide deformylase DUF2084 PF09857.4 gi|312136305|ref|YP_004003642.1| - 0.033 13.8 0.1 1.8 8.3 0.0 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2084) TroA PF01297.12 gi|312136306|ref|YP_004003643.1| - 0.05 12.8 0.0 0.13 11.5 0.0 1.6 1 1 0 1 1 1 0 Periplasmic solute binding protein family AAA_26 PF13500.1 gi|312136306|ref|YP_004003643.1| - 0.058 12.9 0.0 0.45 10.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain DUF1611 PF07755.6 gi|312136306|ref|YP_004003643.1| - 0.082 11.5 0.0 0.2 10.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) ILVD_EDD PF00920.16 gi|312136307|ref|YP_004003644.1| - 2.1e-225 749.0 3.0 2.4e-225 748.8 2.1 1.0 1 0 0 1 1 1 1 Dehydratase family Peptidase_S24 PF00717.18 gi|312136308|ref|YP_004003645.1| - 3.7e-10 39.3 0.1 1e-09 37.9 0.0 1.8 1 1 1 2 2 2 1 Peptidase S24-like tRNA-synt_1d PF00750.14 gi|312136309|ref|YP_004003646.1| - 8e-67 225.5 7.2 1.1e-66 225.0 5.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|312136309|ref|YP_004003646.1| - 7.7e-34 116.2 0.7 3.6e-33 114.0 0.5 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|312136309|ref|YP_004003646.1| - 1.2e-19 70.6 0.2 1.2e-19 70.6 0.2 3.2 4 0 0 4 4 4 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|312136309|ref|YP_004003646.1| - 5.2e-12 45.1 5.4 7.2e-06 24.9 0.1 3.7 3 1 1 4 4 4 3 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|312136309|ref|YP_004003646.1| - 2.8e-08 32.8 8.1 0.0047 15.6 0.1 4.5 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|312136309|ref|YP_004003646.1| - 8.3e-06 25.1 2.7 1.5e-05 24.3 0.7 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|312136309|ref|YP_004003646.1| - 0.00034 18.7 0.4 0.00095 17.2 0.1 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Cpn60_TCP1 PF00118.19 gi|312136310|ref|YP_004003647.1| - 5e-178 592.6 15.4 5.7e-178 592.4 10.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Thiolase_N PF00108.18 gi|312136311|ref|YP_004003648.1| - 3.6e-13 49.1 0.5 1.8e-11 43.5 0.1 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|312136311|ref|YP_004003648.1| - 4.2e-13 48.7 1.7 3e-12 46.0 0.7 2.6 2 1 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|312136311|ref|YP_004003648.1| - 1.4e-05 24.8 1.6 0.012 15.4 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.21 gi|312136311|ref|YP_004003648.1| - 1.8e-05 24.3 3.8 3.3e-05 23.5 1.5 2.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|312136311|ref|YP_004003648.1| - 0.00032 20.2 0.3 0.13 11.9 0.2 2.7 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|312136312|ref|YP_004003649.1| - 4.9e-13 48.9 0.0 1.1e-12 47.7 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|312136312|ref|YP_004003649.1| - 6.7e-07 29.0 0.1 5.5e-06 26.0 0.0 2.0 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|312136312|ref|YP_004003649.1| - 1.3e-05 24.7 0.3 1.9e-05 24.3 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|312136312|ref|YP_004003649.1| - 0.00057 19.4 2.9 0.0009 18.8 1.3 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|312136312|ref|YP_004003649.1| - 0.011 14.6 0.6 0.017 14.1 0.4 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Radical_SAM PF04055.16 gi|312136313|ref|YP_004003650.1| - 9.9e-13 48.5 0.2 3.6e-12 46.7 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136313|ref|YP_004003650.1| - 0.00012 22.2 0.2 0.00029 20.9 0.0 1.8 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136313|ref|YP_004003650.1| - 0.0056 16.7 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain APC2 PF08672.6 gi|312136313|ref|YP_004003650.1| - 0.051 13.8 0.0 0.16 12.2 0.0 1.8 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 FAD_binding_2 PF00890.19 gi|312136314|ref|YP_004003651.1| - 7.7e-103 344.5 0.3 9.6e-103 344.2 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|312136314|ref|YP_004003651.1| - 7.4e-32 109.9 0.1 1.5e-31 108.8 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|312136314|ref|YP_004003651.1| - 4.7e-14 52.7 0.0 2.6e-12 47.0 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312136314|ref|YP_004003651.1| - 2.1e-05 23.2 2.3 0.14 10.5 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.12 gi|312136314|ref|YP_004003651.1| - 7.8e-05 21.8 3.2 0.0025 16.9 0.2 3.4 3 0 0 3 3 3 1 Thi4 family DAO PF01266.19 gi|312136314|ref|YP_004003651.1| - 0.0004 19.3 0.6 0.00091 18.2 0.2 1.7 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|312136314|ref|YP_004003651.1| - 0.0031 16.6 0.1 0.0052 15.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|312136314|ref|YP_004003651.1| - 0.0055 15.6 8.0 0.034 13.0 0.1 3.4 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|312136314|ref|YP_004003651.1| - 0.05 12.6 0.5 0.13 11.3 0.2 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase OMPdecase PF00215.19 gi|312136315|ref|YP_004003652.1| - 3.9e-38 131.0 0.1 5.1e-38 130.7 0.1 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|312136315|ref|YP_004003652.1| - 0.00037 19.8 1.0 0.29 10.3 0.1 2.3 1 1 0 2 2 2 2 PcrB family DUF4231 PF14015.1 gi|312136316|ref|YP_004003653.1| - 0.13 12.2 1.2 0.33 10.9 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DS PF01916.12 gi|312136317|ref|YP_004003654.1| - 1.5e-102 342.7 1.6 1.7e-102 342.5 1.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|312136317|ref|YP_004003654.1| - 0.012 15.2 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Amino acid kinase family HrcA_DNA-bdg PF03444.10 gi|312136318|ref|YP_004003655.1| - 5e-36 121.9 0.3 5e-36 121.9 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|312136318|ref|YP_004003655.1| - 3.9e-32 109.7 3.4 3e-17 62.1 0.3 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|312136318|ref|YP_004003655.1| - 9.4e-09 35.2 0.2 2.6e-08 33.8 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|312136318|ref|YP_004003655.1| - 3.1e-08 33.1 0.3 1.1e-07 31.4 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|312136318|ref|YP_004003655.1| - 0.0005 19.3 0.2 0.003 16.9 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|312136318|ref|YP_004003655.1| - 0.001 18.7 0.1 0.036 13.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|312136318|ref|YP_004003655.1| - 0.0014 18.0 0.1 0.0031 17.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|312136318|ref|YP_004003655.1| - 0.012 15.3 0.1 0.034 13.8 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|312136318|ref|YP_004003655.1| - 0.023 14.4 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|312136318|ref|YP_004003655.1| - 0.037 13.5 0.1 0.076 12.5 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|312136318|ref|YP_004003655.1| - 0.069 13.4 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_terminase PF10668.4 gi|312136318|ref|YP_004003655.1| - 0.074 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Phage terminase small subunit RPA_C PF08784.6 gi|312136318|ref|YP_004003655.1| - 0.14 12.5 0.1 0.34 11.3 0.1 1.6 1 0 0 1 1 1 0 Replication protein A C terminal DUF59 PF01883.14 gi|312136319|ref|YP_004003656.1| - 5.5e-18 64.7 1.0 6.8e-18 64.4 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 Spore_YhcN_YlaJ PF09580.5 gi|312136319|ref|YP_004003656.1| - 0.038 14.1 1.7 0.057 13.5 0.3 1.7 1 1 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AAA_17 PF13207.1 gi|312136320|ref|YP_004003657.1| - 7.5e-13 49.3 0.3 1.4e-12 48.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|312136320|ref|YP_004003657.1| - 2.4e-09 37.5 0.6 4.9e-09 36.5 0.1 1.7 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|312136320|ref|YP_004003657.1| - 3.3e-05 24.1 0.2 0.00011 22.3 0.0 2.0 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|312136320|ref|YP_004003657.1| - 0.00015 21.6 0.0 0.00041 20.2 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase NB-ARC PF00931.17 gi|312136320|ref|YP_004003657.1| - 0.00021 20.2 0.0 0.00034 19.5 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NTPase_1 PF03266.10 gi|312136320|ref|YP_004003657.1| - 0.0011 18.7 0.1 0.0021 17.7 0.0 1.6 2 0 0 2 2 2 1 NTPase Cytidylate_kin2 PF13189.1 gi|312136320|ref|YP_004003657.1| - 0.0022 17.9 0.1 0.004 17.0 0.0 1.5 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.1 gi|312136320|ref|YP_004003657.1| - 0.0049 16.7 0.0 0.0059 16.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|312136320|ref|YP_004003657.1| - 0.0059 16.9 0.1 0.056 13.7 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.1 gi|312136320|ref|YP_004003657.1| - 0.0059 16.4 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|312136320|ref|YP_004003657.1| - 0.0077 15.9 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|312136320|ref|YP_004003657.1| - 0.008 15.7 0.7 0.015 14.9 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|312136320|ref|YP_004003657.1| - 0.0088 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|312136320|ref|YP_004003657.1| - 0.0096 15.7 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Shikimate kinase ATP_bind_1 PF03029.12 gi|312136320|ref|YP_004003657.1| - 0.014 14.9 0.1 0.034 13.6 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.13 gi|312136320|ref|YP_004003657.1| - 0.022 13.8 0.3 0.046 12.7 0.0 1.6 2 0 0 2 2 2 0 6-phosphofructo-2-kinase SRP54 PF00448.17 gi|312136320|ref|YP_004003657.1| - 0.028 13.8 0.3 0.028 13.8 0.2 2.0 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|312136320|ref|YP_004003657.1| - 0.031 14.2 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|312136320|ref|YP_004003657.1| - 0.033 14.1 0.4 0.074 13.0 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.13 gi|312136320|ref|YP_004003657.1| - 0.036 13.5 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|312136320|ref|YP_004003657.1| - 0.056 13.4 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|312136320|ref|YP_004003657.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|312136320|ref|YP_004003657.1| - 0.058 13.0 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|312136320|ref|YP_004003657.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|312136320|ref|YP_004003657.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Glycos_transf_3 PF00591.16 gi|312136321|ref|YP_004003658.1| - 6.2e-94 314.1 0.1 3.9e-93 311.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|312136321|ref|YP_004003658.1| - 8e-23 79.8 0.4 1.8e-22 78.6 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF362 PF04015.7 gi|312136321|ref|YP_004003658.1| - 0.038 13.4 0.0 4.1 6.8 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF362) Trp_syntA PF00290.15 gi|312136322|ref|YP_004003659.1| - 1e-95 319.2 0.1 1.2e-95 318.9 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|312136322|ref|YP_004003659.1| - 1.3e-07 31.1 0.1 6e-07 28.9 0.0 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|312136322|ref|YP_004003659.1| - 5.4e-05 22.5 0.4 0.00032 20.0 0.0 2.2 2 1 0 2 2 2 1 PcrB family NMO PF03060.10 gi|312136322|ref|YP_004003659.1| - 0.00026 20.2 0.1 0.00075 18.7 0.1 1.8 1 1 1 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|312136322|ref|YP_004003659.1| - 0.00096 18.2 0.1 0.038 13.0 0.0 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG BtpA PF03437.10 gi|312136322|ref|YP_004003659.1| - 0.0024 17.1 0.4 0.019 14.2 0.3 2.2 1 1 0 1 1 1 1 BtpA family NanE PF04131.9 gi|312136322|ref|YP_004003659.1| - 0.0089 15.0 0.1 0.03 13.2 0.0 2.0 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|312136322|ref|YP_004003659.1| - 0.014 14.2 0.2 0.14 10.9 0.1 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|312136322|ref|YP_004003659.1| - 0.05 12.6 0.0 3.7 6.5 0.0 2.6 2 1 0 3 3 3 0 Indole-3-glycerol phosphate synthase HMGL-like PF00682.14 gi|312136322|ref|YP_004003659.1| - 0.14 11.7 0.1 0.53 9.9 0.0 2.2 1 1 0 1 1 1 0 HMGL-like PALP PF00291.20 gi|312136323|ref|YP_004003660.1| - 2.1e-41 142.1 0.1 2.5e-41 141.9 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PRAI PF00697.17 gi|312136324|ref|YP_004003661.1| - 1.8e-34 119.0 0.2 2e-34 118.8 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TroA PF01297.12 gi|312136324|ref|YP_004003661.1| - 0.0017 17.6 0.2 0.0048 16.1 0.0 1.8 2 1 0 2 2 2 1 Periplasmic solute binding protein family Ribul_P_3_epim PF00834.14 gi|312136324|ref|YP_004003661.1| - 0.0041 16.2 0.1 0.0066 15.5 0.1 1.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TPK_B1_binding PF04265.9 gi|312136324|ref|YP_004003661.1| - 0.059 13.0 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, vitamin B1 binding domain BioW PF03744.8 gi|312136324|ref|YP_004003661.1| - 0.077 12.4 0.5 0.11 11.8 0.4 1.3 1 0 0 1 1 1 0 6-carboxyhexanoate--CoA ligase DUF1269 PF06897.7 gi|312136324|ref|YP_004003661.1| - 0.14 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) IGPS PF00218.16 gi|312136325|ref|YP_004003662.1| - 2.1e-83 279.3 0.0 2.4e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|312136325|ref|YP_004003662.1| - 3.7e-06 26.5 0.0 5.9e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|312136325|ref|YP_004003662.1| - 1.2e-05 24.6 0.0 5.4e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|312136325|ref|YP_004003662.1| - 0.0013 17.6 0.0 0.0021 16.9 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|312136325|ref|YP_004003662.1| - 0.0015 17.8 0.0 0.0037 16.5 0.0 1.6 1 1 1 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|312136325|ref|YP_004003662.1| - 0.0027 16.7 0.1 0.014 14.3 0.0 2.2 2 2 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|312136325|ref|YP_004003662.1| - 0.0029 16.7 0.0 0.0045 16.0 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG TolB_N PF04052.8 gi|312136325|ref|YP_004003662.1| - 0.037 14.0 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 TolB amino-terminal domain GATase PF00117.23 gi|312136326|ref|YP_004003663.1| - 4.3e-54 182.8 0.3 5.2e-54 182.6 0.2 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|312136326|ref|YP_004003663.1| - 2.1e-09 37.1 0.0 9.4e-09 35.0 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|312136327|ref|YP_004003664.1| - 1.4e-91 306.4 0.0 2.8e-91 305.3 0.0 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|312136327|ref|YP_004003664.1| - 7.2e-23 81.1 0.1 7.5e-22 77.8 0.1 2.5 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region ACT PF01842.20 gi|312136328|ref|YP_004003665.1| - 2.3e-06 26.9 0.1 5.9e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 ACT domain DUF4496 PF14908.1 gi|312136328|ref|YP_004003665.1| - 0.0042 16.9 0.0 0.0052 16.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4496) ACT_7 PF13840.1 gi|312136328|ref|YP_004003665.1| - 0.0055 16.2 0.1 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 ACT domain HTH_AsnC-type PF13404.1 gi|312136328|ref|YP_004003665.1| - 0.011 15.2 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|312136328|ref|YP_004003665.1| - 0.045 13.4 0.1 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain ACT_4 PF13291.1 gi|312136328|ref|YP_004003665.1| - 0.059 13.7 0.1 0.21 11.9 0.1 2.0 1 1 0 1 1 1 0 ACT domain HTH_11 PF08279.7 gi|312136328|ref|YP_004003665.1| - 0.061 12.9 0.2 0.22 11.1 0.1 2.0 2 0 0 2 2 2 0 HTH domain Alba PF01918.16 gi|312136329|ref|YP_004003666.1| - 1e-19 69.8 0.4 1.4e-19 69.4 0.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|312136329|ref|YP_004003666.1| - 0.02 14.5 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.15 gi|312136330|ref|YP_004003667.1| - 4.4e-97 325.4 6.9 4.4e-97 325.4 4.8 4.4 5 0 0 5 5 5 1 DNA topoisomerase Toprim PF01751.17 gi|312136330|ref|YP_004003667.1| - 4.4e-23 81.1 0.0 4.4e-23 81.1 0.0 4.2 4 1 0 4 4 3 1 Toprim domain DEAD PF00270.24 gi|312136330|ref|YP_004003667.1| - 2.2e-16 59.8 1.8 2.3e-15 56.4 0.2 3.4 3 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|312136330|ref|YP_004003667.1| - 1.6e-06 28.0 2.8 1.6e-06 28.0 2.0 3.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|312136330|ref|YP_004003667.1| - 0.0046 16.2 0.8 0.0046 16.2 0.6 2.3 2 1 0 2 2 2 1 SecA DEAD-like domain zf-dskA_traR PF01258.12 gi|312136330|ref|YP_004003667.1| - 0.012 15.3 2.5 0.036 13.7 0.2 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger SBP_bac_7 PF03480.8 gi|312136330|ref|YP_004003667.1| - 0.016 14.3 0.5 0.016 14.3 0.3 2.6 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein, family 7 Toprim_4 PF13662.1 gi|312136330|ref|YP_004003667.1| - 0.034 14.1 0.0 0.89 9.6 0.0 3.1 3 0 0 3 3 3 0 Toprim domain DZR PF12773.2 gi|312136330|ref|YP_004003667.1| - 0.18 11.6 11.0 0.16 11.8 0.5 2.3 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312136330|ref|YP_004003667.1| - 0.19 11.2 16.8 0.8 9.2 1.9 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|312136330|ref|YP_004003667.1| - 0.21 11.2 10.8 0.041 13.5 0.4 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) zf-C4pol PF14260.1 gi|312136330|ref|YP_004003667.1| - 2 8.4 9.5 6.7 6.8 0.3 3.0 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-ISL3 PF14690.1 gi|312136330|ref|YP_004003667.1| - 4.3 7.4 6.9 69 3.5 0.2 3.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|312136330|ref|YP_004003667.1| - 6.7 6.5 12.6 1.4 8.7 3.2 2.4 2 0 0 2 2 2 0 zinc-ribbons zf-RING_4 PF14570.1 gi|312136330|ref|YP_004003667.1| - 6.9 6.3 11.3 0.27 10.8 1.6 2.4 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain HypD PF01924.11 gi|312136331|ref|YP_004003668.1| - 1.4e-151 504.2 1.6 1.6e-151 504.0 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Hydrolase_3 PF08282.7 gi|312136332|ref|YP_004003669.1| - 9.9e-36 123.5 5.7 7.6e-24 84.6 0.4 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|312136332|ref|YP_004003669.1| - 2.8e-10 39.9 0.2 4.1e-09 36.1 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|312136332|ref|YP_004003669.1| - 5.2e-08 33.5 4.2 0.00014 22.3 0.4 3.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|312136332|ref|YP_004003669.1| - 4.4e-07 30.2 4.4 1.7e-06 28.3 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|312136332|ref|YP_004003669.1| - 0.023 14.5 0.5 0.078 12.8 0.0 2.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|312136332|ref|YP_004003669.1| - 0.047 13.3 0.1 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 HAD-hyrolase-like Cse1 PF08506.5 gi|312136332|ref|YP_004003669.1| - 0.056 12.0 0.0 0.082 11.4 0.0 1.3 1 0 0 1 1 1 0 Cse1 Chlam_OMP6 PF03504.8 gi|312136332|ref|YP_004003669.1| - 0.14 12.4 0.5 0.45 10.8 0.0 2.0 2 0 0 2 2 2 0 Chlamydia cysteine-rich outer membrane protein 6 SNO PF01174.14 gi|312136333|ref|YP_004003670.1| - 6.2e-56 189.0 0.5 6.9e-56 188.8 0.4 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|312136333|ref|YP_004003670.1| - 7.4e-11 41.8 0.1 1.1e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|312136333|ref|YP_004003670.1| - 3e-06 26.9 0.1 4.5e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|312136333|ref|YP_004003670.1| - 0.00086 18.7 0.2 0.0014 18.0 0.1 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|312136333|ref|YP_004003670.1| - 0.0011 18.4 0.3 0.24 10.8 0.1 2.8 2 1 0 2 2 2 1 Peptidase C26 Peptidase_S51 PF03575.12 gi|312136333|ref|YP_004003670.1| - 0.0019 17.9 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|312136333|ref|YP_004003670.1| - 0.045 13.0 0.0 0.066 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase UPF0180 PF03698.8 gi|312136333|ref|YP_004003670.1| - 0.077 12.8 0.1 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Thioredoxin_3 PF13192.1 gi|312136333|ref|YP_004003670.1| - 0.092 12.5 2.7 0.15 11.8 0.8 2.1 2 1 0 2 2 2 0 Thioredoxin domain GXGXG PF01493.14 gi|312136334|ref|YP_004003671.1| - 2.3e-44 150.8 16.0 1.2e-36 125.6 5.6 2.1 1 1 1 2 2 2 2 GXGXG motif DUF342 PF03961.8 gi|312136334|ref|YP_004003671.1| - 0.0086 14.5 14.9 0.0071 14.8 4.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF342) Aromatic_hydrox PF11723.3 gi|312136335|ref|YP_004003672.1| - 0.02 14.1 0.0 0.02 14.1 0.0 1.1 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase Tcp10_C PF07202.8 gi|312136335|ref|YP_004003672.1| - 0.028 13.9 0.3 0.028 13.9 0.2 1.0 1 0 0 1 1 1 0 T-complex protein 10 C-terminus PMBR PF09373.5 gi|312136335|ref|YP_004003672.1| - 0.3 11.1 1.8 13 5.9 0.1 2.2 1 1 1 2 2 2 0 Pseudomurein-binding repeat Metallophos PF00149.23 gi|312136336|ref|YP_004003673.1| - 0.0003 20.2 1.5 0.00038 19.8 0.0 1.7 1 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|312136336|ref|YP_004003673.1| - 0.00034 20.4 0.0 0.0004 20.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1599 PF07659.6 gi|312136336|ref|YP_004003673.1| - 0.04 13.9 0.2 0.083 12.9 0.1 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1599) DEAD_assoc PF08494.6 gi|312136337|ref|YP_004003674.1| - 3.8e-58 196.3 0.1 8.7e-58 195.1 0.0 1.7 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|312136337|ref|YP_004003674.1| - 6.1e-31 107.1 0.4 8.7e-30 103.4 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|312136337|ref|YP_004003674.1| - 1.5e-13 50.4 0.0 1.3e-12 47.3 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|312136337|ref|YP_004003674.1| - 9.4e-10 38.6 0.0 2.8e-09 37.0 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|312136337|ref|YP_004003674.1| - 0.0055 15.6 0.2 0.13 11.1 0.0 2.7 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_11 PF13086.1 gi|312136337|ref|YP_004003674.1| - 0.025 14.1 0.4 0.1 12.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|312136337|ref|YP_004003674.1| - 0.032 13.4 0.0 0.092 11.9 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.24 gi|312136337|ref|YP_004003674.1| - 0.06 13.5 0.3 4.6 7.4 0.1 3.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|312136337|ref|YP_004003674.1| - 0.078 12.7 0.0 2.1 8.1 0.0 2.8 3 0 0 3 3 3 0 Part of AAA domain DUF1424 PF07232.6 gi|312136337|ref|YP_004003674.1| - 0.1 11.3 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative rep protein (DUF1424) UPF0066 PF01980.11 gi|312136338|ref|YP_004003675.1| - 1.9e-36 124.6 0.0 2.4e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Pyr_redox_2 PF07992.9 gi|312136339|ref|YP_004003676.1| - 9.2e-15 55.0 0.3 0.00041 20.3 0.0 3.3 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|312136339|ref|YP_004003676.1| - 1.6e-13 50.4 0.6 1.6e-06 27.4 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.19 gi|312136339|ref|YP_004003676.1| - 4.2e-11 42.3 0.7 0.0014 17.5 0.1 3.2 3 0 0 3 3 3 3 FAD binding domain HI0933_like PF03486.9 gi|312136339|ref|YP_004003676.1| - 1.4e-10 40.2 0.1 7.4e-06 24.6 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.19 gi|312136339|ref|YP_004003676.1| - 3.2e-10 39.4 0.0 8.7e-06 24.8 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|312136339|ref|YP_004003676.1| - 5.2e-08 32.1 4.2 0.0015 17.4 0.1 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|312136339|ref|YP_004003676.1| - 6.6e-05 23.2 1.4 0.098 13.0 0.2 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|312136339|ref|YP_004003676.1| - 0.00043 19.3 0.2 0.00099 18.1 0.1 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|312136339|ref|YP_004003676.1| - 0.00067 19.6 2.9 0.00089 19.2 0.0 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|312136339|ref|YP_004003676.1| - 0.001 18.2 0.5 0.54 9.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|312136339|ref|YP_004003676.1| - 0.0012 18.9 0.0 0.09 12.8 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|312136339|ref|YP_004003676.1| - 0.0025 16.9 0.1 0.0025 16.9 0.0 2.5 3 0 0 3 3 3 1 Thi4 family TrkA_N PF02254.13 gi|312136339|ref|YP_004003676.1| - 0.068 13.1 0.1 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Trp_halogenase PF04820.9 gi|312136339|ref|YP_004003676.1| - 0.071 11.7 0.0 0.12 10.9 0.0 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|312136339|ref|YP_004003676.1| - 0.3 10.8 0.0 0.3 10.8 0.0 2.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding NYN PF01936.13 gi|312136340|ref|YP_004003677.1| - 9e-24 84.4 0.0 1.2e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|312136340|ref|YP_004003677.1| - 0.012 15.1 0.2 2.1 7.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF460) Apc4_WD40 PF12894.2 gi|312136340|ref|YP_004003677.1| - 0.1 12.1 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain SelA PF03841.8 gi|312136341|ref|YP_004003678.1| - 7.2e-08 31.5 0.1 1.3e-07 30.7 0.0 1.5 2 0 0 2 2 2 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|312136341|ref|YP_004003678.1| - 0.00064 18.1 0.1 0.0025 16.1 0.1 1.8 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|312136341|ref|YP_004003678.1| - 0.0053 15.5 0.0 0.0086 14.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|312136341|ref|YP_004003678.1| - 0.028 13.5 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase RTC PF01137.16 gi|312136342|ref|YP_004003679.1| - 2.3e-87 291.5 0.1 2.6e-87 291.3 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|312136342|ref|YP_004003679.1| - 7.7e-28 96.5 0.0 1.3e-27 95.8 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BPL_LplA_LipB PF03099.14 gi|312136343|ref|YP_004003680.1| - 1.9e-26 92.5 0.1 3e-26 91.8 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|312136343|ref|YP_004003680.1| - 1.5e-07 30.9 0.2 3.9e-07 29.6 0.1 1.8 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain DUF2262 PF10020.4 gi|312136343|ref|YP_004003680.1| - 0.00026 21.1 0.1 0.00026 21.1 0.0 2.4 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2262) TFIIE_alpha PF02002.12 gi|312136343|ref|YP_004003680.1| - 0.0072 15.8 1.0 0.023 14.2 0.7 1.8 1 0 0 1 1 1 1 TFIIE alpha subunit Mga PF05043.8 gi|312136343|ref|YP_004003680.1| - 0.026 14.7 1.8 0.089 13.0 1.2 1.9 1 0 0 1 1 1 0 Mga helix-turn-helix domain CPSase_L_D2 PF02786.12 gi|312136344|ref|YP_004003681.1| - 1e-81 273.2 0.7 1.5e-81 272.6 0.5 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|312136344|ref|YP_004003681.1| - 5.2e-44 148.8 0.1 1.8e-43 147.1 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|312136344|ref|YP_004003681.1| - 1e-39 134.8 0.0 2.3e-39 133.6 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|312136344|ref|YP_004003681.1| - 2e-17 62.9 0.0 7.1e-16 57.8 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|312136344|ref|YP_004003681.1| - 1.3e-12 47.5 0.1 3.2e-12 46.2 0.1 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.1 gi|312136344|ref|YP_004003681.1| - 1.4e-12 47.6 0.0 2.8e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|312136344|ref|YP_004003681.1| - 1e-09 38.1 0.2 2.6e-08 33.5 0.1 3.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|312136344|ref|YP_004003681.1| - 1.7e-06 28.0 0.5 4.9e-06 26.5 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|312136344|ref|YP_004003681.1| - 2.2e-05 23.8 0.1 4.3e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|312136344|ref|YP_004003681.1| - 0.0023 17.1 0.1 0.0078 15.4 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain AP_endonuc_2 PF01261.19 gi|312136344|ref|YP_004003681.1| - 0.0062 15.8 0.0 0.027 13.7 0.0 2.1 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel OAD_gamma PF04277.8 gi|312136344|ref|YP_004003681.1| - 0.036 14.4 0.2 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Chlam_PMP PF02415.12 gi|312136345|ref|YP_004003682.1| - 9e-13 47.6 47.5 0.1 12.8 0.3 9.6 10 0 0 10 10 10 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Methyltransf_31 PF13847.1 gi|312136346|ref|YP_004003683.1| - 3.8e-13 49.3 0.9 5.7e-13 48.7 0.5 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|312136346|ref|YP_004003683.1| - 4.1e-11 42.5 0.1 5.9e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|312136346|ref|YP_004003683.1| - 4.5e-11 42.4 0.0 7.3e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|312136346|ref|YP_004003683.1| - 8.6e-09 35.4 0.0 1.3e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|312136346|ref|YP_004003683.1| - 1.6e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|312136346|ref|YP_004003683.1| - 4.7e-07 30.3 0.0 7.6e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|312136346|ref|YP_004003683.1| - 2e-06 26.9 0.1 3.5e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|312136346|ref|YP_004003683.1| - 0.00031 21.0 0.0 0.0007 19.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312136346|ref|YP_004003683.1| - 0.00031 21.1 0.0 0.00065 20.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|312136346|ref|YP_004003683.1| - 0.00033 20.3 0.0 0.00046 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|312136346|ref|YP_004003683.1| - 0.00037 19.5 0.0 0.00048 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 FtsJ PF01728.14 gi|312136346|ref|YP_004003683.1| - 0.00071 19.6 0.0 0.0011 18.9 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_12 PF08242.7 gi|312136346|ref|YP_004003683.1| - 0.0011 19.3 0.0 0.0025 18.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|312136346|ref|YP_004003683.1| - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|312136346|ref|YP_004003683.1| - 0.0012 18.0 0.1 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|312136346|ref|YP_004003683.1| - 0.0019 17.9 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|312136346|ref|YP_004003683.1| - 0.0043 15.7 0.0 0.0055 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) FmrO PF07091.6 gi|312136346|ref|YP_004003683.1| - 0.011 14.7 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|312136346|ref|YP_004003683.1| - 0.012 14.6 0.0 0.027 13.4 0.0 1.5 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase N6_Mtase PF02384.11 gi|312136346|ref|YP_004003683.1| - 0.013 14.6 0.0 0.052 12.6 0.0 2.0 1 1 0 1 1 1 0 N-6 DNA Methylase Tox-REase-3 PF15647.1 gi|312136346|ref|YP_004003683.1| - 0.02 14.6 0.9 0.032 14.0 0.7 1.4 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 3 GidB PF02527.10 gi|312136346|ref|YP_004003683.1| - 0.055 12.5 0.7 0.079 12.0 0.2 1.5 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G DNA_methylase PF00145.12 gi|312136346|ref|YP_004003683.1| - 0.084 11.9 0.1 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase HEAT_2 PF13646.1 gi|312136347|ref|YP_004003684.1| - 3.6e-35 120.1 0.4 3.5e-17 62.4 0.3 2.5 2 1 0 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|312136347|ref|YP_004003684.1| - 4.8e-22 76.0 0.0 8.9e-05 22.2 0.0 5.3 4 1 1 5 5 5 4 HEAT repeat HEAT_PBS PF03130.11 gi|312136347|ref|YP_004003684.1| - 7.8e-20 69.2 5.7 1.1e-05 25.4 0.1 5.2 5 0 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|312136347|ref|YP_004003684.1| - 4.2e-18 65.2 1.8 0.0023 18.3 0.0 4.9 4 1 1 5 5 5 4 HEAT-like repeat Arm PF00514.18 gi|312136347|ref|YP_004003684.1| - 6.5e-15 54.3 0.1 0.0016 18.1 0.0 5.0 4 1 1 5 5 5 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|312136347|ref|YP_004003684.1| - 3.7e-09 35.4 0.0 1.3e-07 30.3 0.0 2.6 1 1 1 2 2 2 1 Adaptin N terminal region Cnd1 PF12717.2 gi|312136347|ref|YP_004003684.1| - 1.5e-06 28.1 0.0 0.22 11.3 0.0 4.3 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.3 gi|312136347|ref|YP_004003684.1| - 8e-05 22.5 0.6 0.41 10.4 0.1 3.3 2 1 1 3 3 3 2 Aconitate B N-terminal domain DNA_alkylation PF08713.6 gi|312136347|ref|YP_004003684.1| - 0.0013 18.2 1.4 0.22 11.0 0.0 2.6 1 1 2 3 3 3 2 DNA alkylation repair enzyme Vac14_Fab1_bd PF12755.2 gi|312136347|ref|YP_004003684.1| - 0.0013 19.0 0.0 2 8.8 0.0 4.0 1 1 2 3 3 3 1 Vacuolar 14 Fab1-binding region Vitellogenin_N PF01347.17 gi|312136347|ref|YP_004003684.1| - 0.033 12.4 0.1 0.043 12.0 0.0 1.3 1 1 0 1 1 1 0 Lipoprotein amino terminal region GlutR_dimer PF00745.15 gi|312136347|ref|YP_004003684.1| - 0.2 11.6 2.0 2.9 7.9 0.0 2.8 2 1 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain PgpA PF04608.8 gi|312136348|ref|YP_004003685.1| - 3.4e-12 46.3 0.1 5.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|312136349|ref|YP_004003686.1| - 4.1e-58 196.7 12.7 4.7e-58 196.5 8.8 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Trm56 PF01994.11 gi|312136350|ref|YP_004003687.1| - 1e-51 173.7 0.2 1.3e-51 173.3 0.1 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|312136350|ref|YP_004003687.1| - 0.00041 20.2 0.0 0.0006 19.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF1336 PF07059.7 gi|312136350|ref|YP_004003687.1| - 0.093 12.1 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1336) Fumerase_C PF05683.7 gi|312136351|ref|YP_004003688.1| - 2.9e-25 88.6 0.2 5.4e-25 87.7 0.1 1.4 1 1 0 1 1 1 1 Fumarase C-terminus Pyridoxal_deC PF00282.14 gi|312136352|ref|YP_004003689.1| - 2e-35 121.9 0.0 3.1e-35 121.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|312136352|ref|YP_004003689.1| - 1e-14 54.0 0.1 1.4e-11 43.7 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|312136352|ref|YP_004003689.1| - 1.4e-08 34.1 0.0 2.4e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|312136352|ref|YP_004003689.1| - 9.1e-07 28.1 0.0 3.6e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|312136352|ref|YP_004003689.1| - 1.6e-06 27.5 0.0 4.3e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|312136352|ref|YP_004003689.1| - 0.00012 20.7 0.2 0.00034 19.2 0.2 1.6 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) GDC-P PF02347.11 gi|312136352|ref|YP_004003689.1| - 0.008 14.9 0.2 0.2 10.3 0.0 2.3 2 0 0 2 2 2 1 Glycine cleavage system P-protein PPDK_N PF01326.14 gi|312136353|ref|YP_004003690.1| - 5.7e-113 377.2 0.1 9.9e-113 376.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|312136353|ref|YP_004003690.1| - 2.6e-88 295.7 0.1 4.8e-88 294.8 0.1 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|312136353|ref|YP_004003690.1| - 4e-30 103.2 1.1 1.1e-29 101.7 0.8 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.16 gi|312136353|ref|YP_004003690.1| - 0.00026 21.1 0.9 0.22 11.6 0.0 3.0 2 1 1 3 3 3 2 Radical SAM superfamily Epimerase_2 PF02350.14 gi|312136353|ref|YP_004003690.1| - 0.0012 17.6 0.3 0.0057 15.4 0.1 2.1 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Ribosomal_L16 PF00252.13 gi|312136354|ref|YP_004003691.1| - 1.6e-33 115.2 0.9 1.8e-33 115.0 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DDE_Tnp_IS240 PF13610.1 gi|312136354|ref|YP_004003691.1| - 0.045 13.7 0.1 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 DDE domain Radical_SAM PF04055.16 gi|312136355|ref|YP_004003692.1| - 3.4e-24 85.8 0.2 1.5e-23 83.7 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136355|ref|YP_004003692.1| - 1.1e-18 67.7 0.5 2.5e-18 66.5 0.0 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136355|ref|YP_004003692.1| - 9.8e-13 48.1 0.0 2.6e-12 46.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain SRP19 PF01922.12 gi|312136355|ref|YP_004003692.1| - 0.07 13.7 1.7 0.86 10.2 0.1 2.7 1 1 0 2 2 2 0 SRP19 protein Aminotran_1_2 PF00155.16 gi|312136356|ref|YP_004003693.1| - 3.6e-62 210.4 0.0 4.2e-62 210.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|312136356|ref|YP_004003693.1| - 1.3e-09 37.2 0.0 2.3e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|312136356|ref|YP_004003693.1| - 5.4e-07 28.2 0.0 2.1e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|312136356|ref|YP_004003693.1| - 4e-06 26.1 0.0 8.3e-06 25.0 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|312136356|ref|YP_004003693.1| - 1.4e-05 23.9 0.3 2.7e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Allinase IF2_N PF04760.10 gi|312136356|ref|YP_004003693.1| - 0.00058 19.4 1.0 0.16 11.6 0.1 3.8 4 0 0 4 4 4 1 Translation initiation factor IF-2, N-terminal region DUF433 PF04255.9 gi|312136356|ref|YP_004003693.1| - 0.013 14.9 0.1 14 5.2 0.0 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF433) FRD2 PF03197.8 gi|312136356|ref|YP_004003693.1| - 0.026 15.0 0.0 0.066 13.7 0.0 1.8 1 0 0 1 1 1 0 Bacteriophage FRD2 protein NTP_transferase PF00483.18 gi|312136357|ref|YP_004003694.1| - 4.2e-46 157.2 0.0 5.6e-46 156.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|312136357|ref|YP_004003694.1| - 6.6e-21 72.8 33.6 1.8e-08 33.4 1.9 5.9 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|312136357|ref|YP_004003694.1| - 3.7e-12 46.6 0.0 5e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|312136357|ref|YP_004003694.1| - 4.3e-08 32.5 19.4 4e-05 23.0 1.7 4.6 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|312136357|ref|YP_004003694.1| - 0.0065 16.1 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|312136357|ref|YP_004003694.1| - 0.0091 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|312136358|ref|YP_004003695.1| - 5.5e-47 158.7 0.1 1.1e-46 157.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|312136358|ref|YP_004003695.1| - 1.3e-28 99.3 0.1 4.2e-28 97.7 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|312136358|ref|YP_004003695.1| - 2.6e-22 78.9 0.0 5.7e-22 77.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|312136358|ref|YP_004003695.1| - 9.2e-13 48.0 0.0 3.2e-12 46.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PhosphMutase PF10143.4 gi|312136359|ref|YP_004003696.1| - 1.9e-65 219.7 0.0 4.1e-65 218.6 0.0 1.5 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|312136359|ref|YP_004003696.1| - 2.3e-58 197.5 0.2 2.7e-58 197.3 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|312136359|ref|YP_004003696.1| - 0.0036 16.6 0.0 0.61 9.3 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF92 PF01940.11 gi|312136360|ref|YP_004003697.1| - 8.2e-56 188.6 6.0 9.1e-56 188.5 4.1 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 FTSW_RODA_SPOVE PF01098.14 gi|312136360|ref|YP_004003697.1| - 0.00076 18.3 1.1 0.00076 18.3 0.7 1.6 2 0 0 2 2 2 1 Cell cycle protein DUF2232 PF09991.4 gi|312136360|ref|YP_004003697.1| - 0.0046 15.9 3.2 0.0046 15.9 2.2 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2232) NfeD PF01957.13 gi|312136360|ref|YP_004003697.1| - 0.71 10.0 11.8 1.2 9.2 2.5 2.4 2 1 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3754 PF12576.3 gi|312136360|ref|YP_004003697.1| - 4.5 6.8 6.1 4.4 6.9 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) DUF4538 PF15061.1 gi|312136360|ref|YP_004003697.1| - 5.9 6.2 12.6 1.1 8.5 0.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) CbtB PF09489.5 gi|312136360|ref|YP_004003697.1| - 8.2 6.4 6.8 0.88 9.5 0.3 2.5 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Ribosomal_S3Ae PF01015.13 gi|312136361|ref|YP_004003698.1| - 1.6e-68 229.8 7.1 2e-68 229.5 5.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Minor_tail_Z PF06763.6 gi|312136361|ref|YP_004003698.1| - 0.0015 18.2 0.8 0.002 17.8 0.6 1.2 1 0 0 1 1 1 1 Prophage minor tail protein Z (GPZ) Band_7 PF01145.20 gi|312136361|ref|YP_004003698.1| - 0.022 14.6 2.3 0.099 12.5 0.8 2.1 1 1 0 2 2 2 0 SPFH domain / Band 7 family DltD_M PF04918.7 gi|312136361|ref|YP_004003698.1| - 0.05 13.7 0.1 4.9 7.3 0.1 2.2 2 0 0 2 2 2 0 DltD central region DUF2584 PF10763.4 gi|312136361|ref|YP_004003698.1| - 0.051 13.3 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2584) AMP-binding_C_2 PF14535.1 gi|312136362|ref|YP_004003699.1| - 2e-34 117.5 2.0 1.2e-33 114.9 0.6 2.7 3 1 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|312136362|ref|YP_004003699.1| - 2.1e-22 79.1 1.2 5.1e-22 77.8 0.8 1.6 1 1 0 1 1 1 1 AMP-binding enzyme PRC PF05239.11 gi|312136363|ref|YP_004003700.1| - 6.9e-13 48.2 4.9 8.6e-13 47.9 3.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain TRAM PF01938.15 gi|312136363|ref|YP_004003700.1| - 0.081 12.7 1.4 0.85 9.4 0.0 2.2 1 1 1 2 2 2 0 TRAM domain Pribosyltran PF00156.22 gi|312136364|ref|YP_004003701.1| - 5.9e-14 51.8 6.2 2e-13 50.1 4.3 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|312136364|ref|YP_004003701.1| - 0.0064 15.7 0.1 0.0092 15.2 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Prok-RING_2 PF14445.1 gi|312136364|ref|YP_004003701.1| - 0.0069 16.3 5.4 0.12 12.2 5.3 1.7 2 0 0 2 2 2 1 Prokaryotic RING finger family 2 YajC PF02699.10 gi|312136364|ref|YP_004003701.1| - 0.097 12.3 1.9 0.21 11.3 0.0 2.3 3 0 0 3 3 3 0 Preprotein translocase subunit FYVE PF01363.16 gi|312136364|ref|YP_004003701.1| - 0.13 12.1 11.1 0.62 10.0 7.8 1.9 1 1 0 1 1 1 0 FYVE zinc finger zf-B_box PF00643.19 gi|312136364|ref|YP_004003701.1| - 0.3 10.9 5.0 0.082 12.8 1.2 1.6 2 0 0 2 2 2 0 B-box zinc finger zf-UDP PF14569.1 gi|312136364|ref|YP_004003701.1| - 2.9 7.6 6.7 2.5 7.8 3.4 1.8 2 0 0 2 2 2 0 Zinc-binding RING-finger MoCF_biosynth PF00994.19 gi|312136365|ref|YP_004003702.1| - 1e-32 112.4 0.0 1.3e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF913 PF06025.7 gi|312136365|ref|YP_004003702.1| - 0.044 12.5 0.0 0.057 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) DUF840 PF05801.6 gi|312136365|ref|YP_004003702.1| - 0.048 13.7 0.1 0.08 13.0 0.0 1.3 1 0 0 1 1 1 0 Lagovirus protein of unknown function (DUF840) ACT PF01842.20 gi|312136366|ref|YP_004003703.1| - 1.3e-15 56.4 0.4 5.8e-07 28.8 0.1 2.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|312136366|ref|YP_004003703.1| - 1.2e-05 25.5 0.8 0.17 12.2 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|312136366|ref|YP_004003703.1| - 0.00015 21.2 0.1 0.26 10.8 0.0 2.9 2 1 0 2 2 2 2 ACT domain SecE PF00584.15 gi|312136369|ref|YP_004003706.1| - 6.3e-05 22.4 0.6 7.3e-05 22.2 0.4 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF3188 PF11384.3 gi|312136369|ref|YP_004003706.1| - 0.27 10.8 2.4 0.4 10.2 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3188) Spt5-NGN PF03439.8 gi|312136370|ref|YP_004003707.1| - 1e-22 79.6 1.1 1.5e-22 79.1 0.1 1.7 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|312136370|ref|YP_004003707.1| - 1.1e-06 28.1 0.1 1.1e-06 28.1 0.1 1.7 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|312136370|ref|YP_004003707.1| - 1.9e-06 28.0 0.9 2e-05 24.7 0.0 2.6 2 1 0 2 2 2 1 Transcription termination factor nusG YliH PF10799.3 gi|312136370|ref|YP_004003707.1| - 0.06 13.0 0.1 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Biofilm formation protein (YliH/bssR) Ribosomal_L11_N PF03946.9 gi|312136371|ref|YP_004003708.1| - 5.1e-26 89.9 1.1 8.7e-26 89.1 0.4 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|312136371|ref|YP_004003708.1| - 1e-25 89.6 0.6 1.9e-25 88.7 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain IF2_N PF04760.10 gi|312136371|ref|YP_004003708.1| - 1.7 8.3 6.1 1.7 8.3 0.0 3.4 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Ribosomal_L1 PF00687.16 gi|312136372|ref|YP_004003709.1| - 1.3e-50 171.7 4.7 1.6e-50 171.5 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RloB PF13707.1 gi|312136372|ref|YP_004003709.1| - 3.6 7.1 7.4 0.55 9.8 1.0 2.2 3 0 0 3 3 3 0 RloB-like protein Terminase_2 PF03592.11 gi|312136372|ref|YP_004003709.1| - 4.5 7.5 6.5 4.9 7.4 2.2 2.1 2 0 0 2 2 2 0 Terminase small subunit Ribosomal_L10 PF00466.15 gi|312136373|ref|YP_004003710.1| - 2.3e-25 88.4 0.5 2.3e-25 88.4 0.4 2.0 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|312136373|ref|YP_004003710.1| - 0.024 14.9 16.5 0.15 12.4 11.5 2.3 1 1 0 1 1 1 0 60s Acidic ribosomal protein HTH_Crp_2 PF13545.1 gi|312136373|ref|YP_004003710.1| - 0.068 12.9 0.2 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain PBP_sp32 PF07222.7 gi|312136373|ref|YP_004003710.1| - 0.091 11.9 2.2 0.13 11.3 1.5 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 TCP PF03634.8 gi|312136373|ref|YP_004003710.1| - 0.12 12.7 2.8 0.2 12.0 1.9 1.3 1 0 0 1 1 1 0 TCP family transcription factor BSP_II PF05432.6 gi|312136373|ref|YP_004003710.1| - 0.47 9.6 10.4 0.69 9.1 7.2 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) SMN PF06003.7 gi|312136373|ref|YP_004003710.1| - 1 8.4 4.8 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Survival motor neuron protein (SMN) SR-25 PF10500.4 gi|312136373|ref|YP_004003710.1| - 1.2 8.5 11.6 1.9 7.9 8.0 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein Radial_spoke PF04712.7 gi|312136373|ref|YP_004003710.1| - 4 6.0 8.5 6.4 5.4 5.9 1.2 1 0 0 1 1 1 0 Radial spokehead-like protein Vfa1 PF08432.5 gi|312136373|ref|YP_004003710.1| - 8.3 6.3 12.6 15 5.5 8.7 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Ribosomal_60s PF00428.14 gi|312136374|ref|YP_004003711.1| - 1.6e-12 47.6 42.0 3.5e-12 46.5 21.8 2.1 1 1 1 2 2 2 2 60s Acidic ribosomal protein DUF2052 PF09747.4 gi|312136374|ref|YP_004003711.1| - 0.032 14.1 12.3 0.039 13.8 8.5 1.1 1 0 0 1 1 1 0 Coiled-coil domain containing protein (DUF2052) DDHD PF02862.12 gi|312136374|ref|YP_004003711.1| - 0.059 13.1 2.9 0.067 12.9 2.0 1.1 1 0 0 1 1 1 0 DDHD domain DUF177 PF02620.12 gi|312136374|ref|YP_004003711.1| - 0.067 13.2 11.9 0.076 13.0 8.3 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 MTTB PF06253.6 gi|312136374|ref|YP_004003711.1| - 0.075 10.7 0.3 0.088 10.5 0.2 1.1 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) UPF0052 PF01933.13 gi|312136374|ref|YP_004003711.1| - 0.15 11.3 2.2 0.19 11.0 1.5 1.0 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 Zip PF02535.17 gi|312136374|ref|YP_004003711.1| - 0.2 10.6 1.2 0.2 10.6 0.8 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Sec62 PF03839.11 gi|312136374|ref|YP_004003711.1| - 0.44 9.9 6.5 0.6 9.4 4.5 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 RNase_H2-Ydr279 PF09468.5 gi|312136374|ref|YP_004003711.1| - 0.46 9.6 4.9 0.52 9.4 3.4 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) MIP-T3 PF10243.4 gi|312136374|ref|YP_004003711.1| - 0.51 8.7 16.0 0.59 8.5 11.1 1.2 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 Ycf1 PF05758.7 gi|312136374|ref|YP_004003711.1| - 0.54 7.9 5.6 0.48 8.0 3.9 1.1 1 0 0 1 1 1 0 Ycf1 NOA36 PF06524.7 gi|312136374|ref|YP_004003711.1| - 0.58 9.3 5.4 0.56 9.4 3.7 1.1 1 0 0 1 1 1 0 NOA36 protein RR_TM4-6 PF06459.7 gi|312136374|ref|YP_004003711.1| - 0.61 9.9 13.3 0.74 9.6 9.2 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Paf1 PF03985.8 gi|312136374|ref|YP_004003711.1| - 0.62 8.7 15.4 0.62 8.7 10.7 1.1 1 0 0 1 1 1 0 Paf1 Daxx PF03344.10 gi|312136374|ref|YP_004003711.1| - 0.72 8.2 18.4 0.75 8.2 12.8 1.1 1 0 0 1 1 1 0 Daxx Family CobT PF06213.7 gi|312136374|ref|YP_004003711.1| - 0.82 8.7 16.6 0.97 8.5 11.5 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT RNA_pol_3_Rpc31 PF11705.3 gi|312136374|ref|YP_004003711.1| - 1.1 9.1 17.0 1.3 8.9 11.8 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 CDC45 PF02724.9 gi|312136374|ref|YP_004003711.1| - 1.2 7.1 10.2 1.3 6.9 7.1 1.1 1 0 0 1 1 1 0 CDC45-like protein SHS2_FTSA PF02491.15 gi|312136374|ref|YP_004003711.1| - 1.2 9.0 4.4 1.8 8.5 0.2 2.5 1 1 2 3 3 3 0 SHS2 domain inserted in FTSA DUF2796 PF10986.3 gi|312136374|ref|YP_004003711.1| - 1.2 9.0 8.6 1.5 8.7 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) DUF3408 PF11888.3 gi|312136374|ref|YP_004003711.1| - 1.3 8.9 9.5 1.8 8.5 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) TLP-20 PF06088.6 gi|312136374|ref|YP_004003711.1| - 1.5 8.5 5.8 1.6 8.3 4.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Cytochrom_C552 PF02335.10 gi|312136374|ref|YP_004003711.1| - 1.5 7.4 7.0 1.8 7.1 4.9 1.0 1 0 0 1 1 1 0 Cytochrome c552 VID27 PF08553.5 gi|312136374|ref|YP_004003711.1| - 1.8 6.7 13.0 1.8 6.6 9.0 1.1 1 0 0 1 1 1 0 VID27 cytoplasmic protein SDA1 PF05285.7 gi|312136374|ref|YP_004003711.1| - 1.8 7.7 15.5 2.1 7.5 10.8 1.1 1 0 0 1 1 1 0 SDA1 FLO_LFY PF01698.11 gi|312136374|ref|YP_004003711.1| - 2 7.1 7.7 2.4 6.9 5.4 1.0 1 0 0 1 1 1 0 Floricaula / Leafy protein SAPS PF04499.10 gi|312136374|ref|YP_004003711.1| - 2.2 6.8 6.1 2.5 6.6 4.2 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Nop14 PF04147.7 gi|312136374|ref|YP_004003711.1| - 2.3 6.0 16.8 2.5 5.8 11.6 1.1 1 0 0 1 1 1 0 Nop14-like family MYCBPAP PF14646.1 gi|312136374|ref|YP_004003711.1| - 2.4 6.8 7.5 2.8 6.5 5.2 1.0 1 0 0 1 1 1 0 MYCBP-associated protein family CKAP2_C PF15297.1 gi|312136374|ref|YP_004003711.1| - 2.5 6.8 13.1 2.9 6.6 9.1 1.2 1 0 0 1 1 1 0 Cytoskeleton-associated protein 2 C-terminus Adeno_terminal PF02459.10 gi|312136374|ref|YP_004003711.1| - 3 5.9 9.3 2.8 5.9 6.4 1.2 1 0 0 1 1 1 0 Adenoviral DNA terminal protein PBP1_TM PF14812.1 gi|312136374|ref|YP_004003711.1| - 3.8 7.8 8.6 5.9 7.2 6.0 1.3 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal DUF719 PF05334.8 gi|312136374|ref|YP_004003711.1| - 4.2 7.3 8.0 5.1 7.0 5.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF719) DHHW PF14286.1 gi|312136374|ref|YP_004003711.1| - 4.2 6.5 7.9 5.1 6.2 5.5 1.1 1 0 0 1 1 1 0 DHHW protein Sigma70_ner PF04546.8 gi|312136374|ref|YP_004003711.1| - 4.7 6.7 22.1 5.4 6.5 15.1 1.3 1 1 0 1 1 1 0 Sigma-70, non-essential region PBP_sp32 PF07222.7 gi|312136374|ref|YP_004003711.1| - 5.2 6.1 13.8 7.2 5.7 9.6 1.4 1 0 0 1 1 1 0 Proacrosin binding protein sp32 PCEMA1 PF07418.6 gi|312136374|ref|YP_004003711.1| - 5.6 6.2 13.7 6.4 6.0 9.5 1.0 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 TRAP_alpha PF03896.11 gi|312136374|ref|YP_004003711.1| - 6.8 5.5 13.6 7.6 5.4 9.4 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit DNA_pol_phi PF04931.8 gi|312136374|ref|YP_004003711.1| - 7.5 4.1 17.6 7.7 4.1 12.2 1.2 1 0 0 1 1 1 0 DNA polymerase phi Prog_receptor PF02161.10 gi|312136374|ref|YP_004003711.1| - 8.1 5.1 8.3 7.7 5.2 5.7 1.1 1 0 0 1 1 1 0 Progesterone receptor HD PF01966.17 gi|312136374|ref|YP_004003711.1| - 9.1 6.3 7.3 18 5.3 5.0 1.6 1 1 0 1 1 1 0 HD domain DUF2457 PF10446.4 gi|312136374|ref|YP_004003711.1| - 9.7 4.7 16.7 11 4.6 11.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) tRNA-synt_2c PF01411.14 gi|312136375|ref|YP_004003712.1| - 2.4e-142 475.0 0.0 3.6e-142 474.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|312136375|ref|YP_004003712.1| - 5.5e-12 45.3 0.4 1.7e-11 43.7 0.3 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|312136375|ref|YP_004003712.1| - 1.4e-06 27.9 0.3 3.5e-06 26.6 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.10 gi|312136375|ref|YP_004003712.1| - 1.7e-05 24.1 0.0 3.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit IMD PF08397.6 gi|312136375|ref|YP_004003712.1| - 2.5 7.3 14.7 0.16 11.2 2.6 3.1 3 0 0 3 3 3 0 IRSp53/MIM homology domain DUF39 PF01837.11 gi|312136376|ref|YP_004003713.1| - 3.9e-112 374.2 0.0 4.5e-112 374.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_8 PF13183.1 gi|312136376|ref|YP_004003713.1| - 0.00084 19.3 4.0 0.16 11.9 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136376|ref|YP_004003713.1| - 0.0032 17.2 10.5 0.0055 16.5 1.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136376|ref|YP_004003713.1| - 0.0072 16.1 13.8 0.023 14.4 9.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136376|ref|YP_004003713.1| - 0.027 14.8 12.6 0.42 11.0 1.7 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136376|ref|YP_004003713.1| - 0.03 14.2 11.6 0.8 9.7 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312136376|ref|YP_004003713.1| - 0.041 14.1 14.0 0.07 13.4 9.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312136376|ref|YP_004003713.1| - 0.13 11.9 15.5 0.5 10.0 1.6 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136376|ref|YP_004003713.1| - 0.54 10.1 13.3 3.8 7.4 9.3 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312136376|ref|YP_004003713.1| - 1.3 9.5 13.1 2.8 8.5 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312136376|ref|YP_004003713.1| - 8.1 6.8 13.8 14 6.1 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain ThiI PF02568.9 gi|312136377|ref|YP_004003714.1| - 2.3e-68 229.5 0.2 3.7e-68 228.8 0.1 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|312136377|ref|YP_004003714.1| - 9.1e-25 87.2 2.4 9.1e-25 87.2 1.7 1.8 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|312136377|ref|YP_004003714.1| - 1.1e-07 31.4 0.2 3.1e-05 23.3 0.1 2.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|312136377|ref|YP_004003714.1| - 1.7e-05 23.5 0.1 0.0037 15.8 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|312136377|ref|YP_004003714.1| - 0.003 17.0 0.0 0.017 14.6 0.0 2.1 2 1 0 2 2 2 1 Asparagine synthase ATP_bind_4 PF01902.12 gi|312136377|ref|YP_004003714.1| - 0.014 14.7 0.1 0.13 11.6 0.0 2.6 3 0 0 3 3 3 0 ATP-binding region ATP_bind_3 PF01171.15 gi|312136377|ref|YP_004003714.1| - 0.034 13.6 0.1 0.52 9.7 0.0 2.4 2 1 0 2 2 2 0 PP-loop family Cupredoxin_1 PF13473.1 gi|312136377|ref|YP_004003714.1| - 0.095 12.6 0.0 19 5.1 0.0 3.2 3 0 0 3 3 3 0 Cupredoxin-like domain DUF2892 PF11127.3 gi|312136378|ref|YP_004003715.1| - 0.061 13.1 1.0 0.084 12.7 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DUF3040 PF11239.3 gi|312136378|ref|YP_004003715.1| - 0.16 12.0 1.1 0.2 11.7 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) His_biosynth PF00977.16 gi|312136379|ref|YP_004003716.1| - 5.4e-43 146.8 0.1 6.1e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|312136379|ref|YP_004003716.1| - 0.00073 19.1 0.1 0.0014 18.2 0.1 1.5 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PRAI PF00697.17 gi|312136379|ref|YP_004003716.1| - 0.0013 18.3 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PcrB PF01884.12 gi|312136379|ref|YP_004003716.1| - 0.016 14.4 0.5 0.033 13.4 0.2 1.5 1 1 0 1 1 1 0 PcrB family NSP13 PF06460.7 gi|312136379|ref|YP_004003716.1| - 0.14 10.9 0.6 0.21 10.4 0.4 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 DUF2149 PF09919.4 gi|312136380|ref|YP_004003717.1| - 7.9e-25 86.7 0.3 9e-25 86.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.11 gi|312136381|ref|YP_004003718.1| - 4e-06 26.4 1.0 4.8e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family Sigma70_r4 PF04545.11 gi|312136381|ref|YP_004003718.1| - 0.049 12.9 0.9 6.3 6.1 0.1 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2162 PF09930.4 gi|312136382|ref|YP_004003719.1| - 9.4e-59 198.2 23.1 1.1e-58 198.0 16.0 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Abhydrolase_9_N PF15420.1 gi|312136382|ref|YP_004003719.1| - 0.12 12.1 8.1 2.8 7.6 4.9 2.3 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Cation_ATPase_C PF00689.16 gi|312136382|ref|YP_004003719.1| - 5.3 6.5 14.5 7 6.1 9.1 1.9 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus PepSY PF03413.14 gi|312136383|ref|YP_004003720.1| - 8e-05 23.2 0.4 0.00014 22.4 0.3 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF4097 PF13349.1 gi|312136383|ref|YP_004003720.1| - 0.0014 18.2 1.2 0.0016 18.0 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) tRNA_anti-like PF12869.2 gi|312136383|ref|YP_004003720.1| - 0.015 14.7 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 tRNA_anti-like Folate_carrier PF01770.13 gi|312136383|ref|YP_004003720.1| - 0.1 11.1 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Reduced folate carrier Chordopox_A13L PF05961.6 gi|312136383|ref|YP_004003720.1| - 0.71 9.8 3.2 1.5 8.8 1.5 2.0 1 1 1 2 2 2 0 Chordopoxvirus A13L protein PGK PF00162.14 gi|312136384|ref|YP_004003721.1| - 1.3e-123 412.3 0.2 1.5e-123 412.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF3245 PF11595.3 gi|312136384|ref|YP_004003721.1| - 0.22 11.7 1.2 6.8 6.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3245) TIM PF00121.13 gi|312136385|ref|YP_004003722.1| - 1.3e-33 116.0 3.4 8e-32 110.2 2.4 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|312136385|ref|YP_004003722.1| - 6.8e-06 25.3 1.1 0.00015 20.9 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|312136385|ref|YP_004003722.1| - 8.8e-06 25.0 6.4 0.00013 21.1 4.4 2.4 1 1 0 1 1 1 1 Nitronate monooxygenase Trp_syntA PF00290.15 gi|312136385|ref|YP_004003722.1| - 0.00013 20.6 0.5 0.00017 20.2 0.3 1.5 1 1 0 1 1 1 1 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|312136385|ref|YP_004003722.1| - 0.00024 20.0 0.1 0.00036 19.4 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|312136385|ref|YP_004003722.1| - 0.00027 20.0 0.5 0.00051 19.1 0.3 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|312136385|ref|YP_004003722.1| - 0.00038 19.7 2.5 0.00097 18.4 0.4 2.2 1 1 1 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|312136385|ref|YP_004003722.1| - 0.0019 17.5 1.6 0.026 13.8 0.1 3.0 2 1 0 2 2 2 1 Histidine biosynthesis protein PrpR_N PF06506.6 gi|312136385|ref|YP_004003722.1| - 0.019 14.4 2.3 0.18 11.1 0.1 2.9 2 1 1 3 3 3 0 Propionate catabolism activator Glu_synthase PF01645.12 gi|312136385|ref|YP_004003722.1| - 0.019 13.8 2.0 0.042 12.7 0.7 2.0 1 1 0 1 1 1 0 Conserved region in glutamate synthase TMP-TENI PF02581.12 gi|312136385|ref|YP_004003722.1| - 0.024 13.7 0.7 4.3 6.4 0.0 2.5 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Rad51 PF08423.6 gi|312136385|ref|YP_004003722.1| - 0.045 12.6 0.0 0.23 10.3 0.0 1.9 2 0 0 2 2 2 0 Rad51 TP_methylase PF00590.15 gi|312136386|ref|YP_004003723.1| - 3.6e-40 137.9 0.0 4.1e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MMR_HSR1_C PF08438.5 gi|312136387|ref|YP_004003724.1| - 8e-41 138.6 2.3 1.3e-40 137.9 1.6 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|312136387|ref|YP_004003724.1| - 1.6e-17 63.5 0.0 6e-17 61.6 0.0 2.1 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|312136387|ref|YP_004003724.1| - 2.4e-13 49.6 0.0 4.6e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|312136387|ref|YP_004003724.1| - 1.6e-07 30.7 0.1 5.2e-06 25.8 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B Mg_chelatase PF01078.16 gi|312136388|ref|YP_004003725.1| - 5.7e-15 55.0 0.0 1.7e-07 30.6 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.1 gi|312136388|ref|YP_004003725.1| - 1.2e-13 51.4 0.0 2.8e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.18 gi|312136388|ref|YP_004003725.1| - 6.9e-10 38.2 1.3 3.9e-07 29.1 0.3 3.1 2 1 0 2 2 2 2 MCM2/3/5 family AAA_5 PF07728.9 gi|312136388|ref|YP_004003725.1| - 2.5e-08 33.7 0.1 0.0091 15.7 0.0 2.9 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|312136388|ref|YP_004003725.1| - 8.3e-05 22.7 0.0 0.00093 19.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|312136388|ref|YP_004003725.1| - 0.00016 21.6 0.0 0.00056 19.9 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain VWA PF00092.23 gi|312136388|ref|YP_004003725.1| - 0.00023 20.9 0.0 0.0005 19.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain TIP49 PF06068.8 gi|312136388|ref|YP_004003725.1| - 0.00056 18.7 2.1 2.4 6.7 0.0 3.4 3 0 0 3 3 3 2 TIP49 C-terminus Sigma54_activat PF00158.21 gi|312136388|ref|YP_004003725.1| - 0.0006 19.3 0.0 0.34 10.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase_2 PF13335.1 gi|312136388|ref|YP_004003725.1| - 0.0014 18.9 0.1 0.0045 17.3 0.1 1.9 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|312136388|ref|YP_004003725.1| - 0.0023 18.1 0.1 0.019 15.1 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|312136388|ref|YP_004003725.1| - 0.0037 16.2 0.0 0.022 13.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_29 PF13555.1 gi|312136388|ref|YP_004003725.1| - 0.01 15.3 0.1 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2828 PF11443.3 gi|312136388|ref|YP_004003725.1| - 0.018 13.2 0.1 0.18 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2828) Miro PF08477.8 gi|312136388|ref|YP_004003725.1| - 0.038 14.5 2.2 0.85 10.1 0.0 3.5 4 1 1 5 5 4 0 Miro-like protein MobB PF03205.9 gi|312136388|ref|YP_004003725.1| - 0.041 13.5 0.1 0.17 11.6 0.1 2.1 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B VWA_CoxE PF05762.9 gi|312136388|ref|YP_004003725.1| - 0.11 11.6 0.1 1.1 8.3 0.1 2.0 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein CobN-Mg_chel PF02514.11 gi|312136389|ref|YP_004003726.1| - 0 1094.3 0.0 0 1094.1 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase TP_methylase PF00590.15 gi|312136390|ref|YP_004003727.1| - 4.1e-47 160.6 0.0 4.9e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Oligomerisation PF02410.10 gi|312136390|ref|YP_004003727.1| - 0.12 12.3 0.2 0.96 9.5 0.0 2.1 2 1 0 2 2 2 0 Oligomerisation domain SRP54 PF00448.17 gi|312136391|ref|YP_004003728.1| - 7.3e-78 260.5 2.1 1.3e-77 259.7 1.5 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|312136391|ref|YP_004003728.1| - 3e-11 43.2 4.9 3e-11 43.2 3.4 2.7 1 1 1 2 2 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.1 gi|312136391|ref|YP_004003728.1| - 3.2e-07 30.1 0.8 6.7e-07 29.0 0.6 1.5 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|312136391|ref|YP_004003728.1| - 2.5e-05 23.9 3.3 2.5e-05 23.9 2.3 2.7 2 2 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|312136391|ref|YP_004003728.1| - 3.4e-05 23.3 1.1 6.7e-05 22.4 0.8 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|312136391|ref|YP_004003728.1| - 5.1e-05 22.7 4.7 5.1e-05 22.7 3.2 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|312136391|ref|YP_004003728.1| - 6.1e-05 23.1 0.0 0.00019 21.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|312136391|ref|YP_004003728.1| - 0.00056 19.8 1.4 0.0014 18.5 0.2 2.1 1 1 1 2 2 2 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|312136391|ref|YP_004003728.1| - 0.00065 19.3 0.1 0.0019 17.8 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain AAA_17 PF13207.1 gi|312136391|ref|YP_004003728.1| - 0.00073 20.3 1.2 0.0022 18.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|312136391|ref|YP_004003728.1| - 0.00076 18.6 0.3 0.0014 17.7 0.2 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|312136391|ref|YP_004003728.1| - 0.0013 18.5 0.0 0.0028 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|312136391|ref|YP_004003728.1| - 0.0014 18.8 1.2 0.0055 16.9 0.8 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|312136391|ref|YP_004003728.1| - 0.0037 16.3 0.3 0.0084 15.1 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|312136391|ref|YP_004003728.1| - 0.006 15.3 0.7 0.039 12.7 0.5 2.1 1 1 0 1 1 1 1 ArgK protein B12-binding PF02310.14 gi|312136391|ref|YP_004003728.1| - 0.0064 16.3 0.1 0.018 14.9 0.1 1.8 1 1 0 2 2 2 1 B12 binding domain AAA_28 PF13521.1 gi|312136391|ref|YP_004003728.1| - 0.0065 16.4 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|312136391|ref|YP_004003728.1| - 0.01 15.1 0.3 0.032 13.5 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase AAA_11 PF13086.1 gi|312136391|ref|YP_004003728.1| - 0.011 15.3 4.1 0.012 15.2 0.0 2.3 1 1 1 2 2 2 0 AAA domain DUF2855 PF11017.3 gi|312136391|ref|YP_004003728.1| - 0.011 14.8 0.1 0.017 14.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) AAA_24 PF13479.1 gi|312136391|ref|YP_004003728.1| - 0.012 15.2 0.5 0.025 14.1 0.1 1.8 2 1 0 2 2 1 0 AAA domain Helicase_RecD PF05127.9 gi|312136391|ref|YP_004003728.1| - 0.012 15.2 1.8 0.013 15.1 0.2 1.8 2 0 0 2 2 2 0 Helicase ResIII PF04851.10 gi|312136391|ref|YP_004003728.1| - 0.013 15.3 1.0 0.013 15.3 0.7 2.1 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit 6PF2K PF01591.13 gi|312136391|ref|YP_004003728.1| - 0.018 14.0 0.8 0.052 12.6 0.1 2.0 1 1 1 2 2 2 0 6-phosphofructo-2-kinase RNA_helicase PF00910.17 gi|312136391|ref|YP_004003728.1| - 0.019 15.1 0.3 0.17 12.0 0.2 2.4 1 1 0 1 1 1 0 RNA helicase DUF853 PF05872.7 gi|312136391|ref|YP_004003728.1| - 0.021 13.1 0.1 0.021 13.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|312136391|ref|YP_004003728.1| - 0.025 14.8 0.7 0.15 12.3 0.0 2.2 2 0 0 2 2 2 0 ABC transporter Arf PF00025.16 gi|312136391|ref|YP_004003728.1| - 0.033 13.4 0.4 0.098 11.8 0.0 1.9 2 0 0 2 2 2 0 ADP-ribosylation factor family DUF258 PF03193.11 gi|312136391|ref|YP_004003728.1| - 0.038 13.1 1.3 0.17 11.0 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|312136391|ref|YP_004003728.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|312136391|ref|YP_004003728.1| - 0.063 12.4 1.2 0.11 11.6 0.0 2.0 2 1 1 3 3 3 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.4 gi|312136391|ref|YP_004003728.1| - 0.064 11.8 0.1 0.14 10.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|312136391|ref|YP_004003728.1| - 0.095 12.6 0.0 0.24 11.3 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain DNA_pol3_delta2 PF13177.1 gi|312136391|ref|YP_004003728.1| - 2 8.0 5.7 1 8.9 0.1 2.8 1 1 1 2 2 2 0 DNA polymerase III, delta subunit Pox_A32 PF04665.7 gi|312136391|ref|YP_004003728.1| - 4.8 6.4 7.4 0.69 9.1 0.1 2.4 3 0 0 3 3 2 0 Poxvirus A32 protein Prefoldin PF02996.12 gi|312136392|ref|YP_004003729.1| - 1e-26 92.9 4.9 1e-26 92.9 3.4 1.4 2 0 0 2 2 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|312136392|ref|YP_004003729.1| - 4.7e-09 35.9 10.8 4e-06 26.5 2.9 2.1 2 0 0 2 2 2 2 Prefoldin subunit Macoilin PF09726.4 gi|312136392|ref|YP_004003729.1| - 0.001 17.5 2.1 0.001 17.5 1.5 1.6 2 0 0 2 2 2 1 Transmembrane protein Lectin_N PF03954.9 gi|312136392|ref|YP_004003729.1| - 0.0019 17.6 0.2 0.0025 17.2 0.2 1.2 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain DUF948 PF06103.6 gi|312136392|ref|YP_004003729.1| - 0.002 17.9 4.0 0.0041 16.9 0.2 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF3086 PF11285.3 gi|312136392|ref|YP_004003729.1| - 0.0024 16.7 3.7 0.0094 14.7 1.8 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3086) NPV_P10 PF05531.7 gi|312136392|ref|YP_004003729.1| - 0.0033 17.6 7.6 0.19 11.9 0.3 2.3 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|312136392|ref|YP_004003729.1| - 0.0053 16.5 1.6 0.25 11.1 0.1 2.2 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Tektin PF03148.9 gi|312136392|ref|YP_004003729.1| - 0.0074 14.8 1.2 0.0074 14.8 0.8 1.9 2 0 0 2 2 2 1 Tektin family Laminin_II PF06009.7 gi|312136392|ref|YP_004003729.1| - 0.008 15.9 6.3 0.1 12.3 0.5 2.2 2 0 0 2 2 2 1 Laminin Domain II LcrV PF04792.7 gi|312136392|ref|YP_004003729.1| - 0.01 14.9 2.9 0.012 14.7 2.0 1.1 1 0 0 1 1 1 0 V antigen (LcrV) protein HAUS-augmin3 PF14932.1 gi|312136392|ref|YP_004003729.1| - 0.01 15.0 1.3 0.01 15.0 0.9 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 IFT57 PF10498.4 gi|312136392|ref|YP_004003729.1| - 0.011 14.4 1.2 0.011 14.4 0.8 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 IncA PF04156.9 gi|312136392|ref|YP_004003729.1| - 0.012 15.2 1.4 0.012 15.2 0.9 2.1 2 0 0 2 2 2 0 IncA protein OmpH PF03938.9 gi|312136392|ref|YP_004003729.1| - 0.012 15.5 4.1 0.026 14.4 0.2 2.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) CENP-F_leu_zip PF10473.4 gi|312136392|ref|YP_004003729.1| - 0.013 15.3 11.4 0.17 11.7 2.5 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4515 PF14988.1 gi|312136392|ref|YP_004003729.1| - 0.015 14.9 1.7 0.015 14.9 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Gp-FAR-1 PF05823.7 gi|312136392|ref|YP_004003729.1| - 0.017 15.1 8.6 0.089 12.7 2.3 2.1 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Alpha-2-MRAP_C PF06401.6 gi|312136392|ref|YP_004003729.1| - 0.019 14.8 1.1 0.027 14.3 0.8 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain PTRF_SDPR PF15237.1 gi|312136392|ref|YP_004003729.1| - 0.02 14.3 1.7 0.02 14.3 1.2 1.7 2 0 0 2 2 2 0 PTRF/SDPR family PspA_IM30 PF04012.7 gi|312136392|ref|YP_004003729.1| - 0.023 14.0 7.1 0.03 13.6 1.0 2.1 2 0 0 2 2 2 0 PspA/IM30 family Snf7 PF03357.16 gi|312136392|ref|YP_004003729.1| - 0.023 14.1 16.1 0.12 11.7 5.1 2.2 2 0 0 2 2 2 0 Snf7 Filament PF00038.16 gi|312136392|ref|YP_004003729.1| - 0.024 14.1 4.9 0.026 14.0 0.4 2.0 2 0 0 2 2 2 0 Intermediate filament protein Mod_r PF07200.8 gi|312136392|ref|YP_004003729.1| - 0.025 14.4 8.5 0.2 11.5 1.3 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Laminin_I PF06008.9 gi|312136392|ref|YP_004003729.1| - 0.028 13.7 1.1 0.028 13.7 0.7 2.0 2 0 0 2 2 2 0 Laminin Domain I DUF2937 PF11157.3 gi|312136392|ref|YP_004003729.1| - 0.035 13.4 0.1 0.65 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Syntaxin PF00804.20 gi|312136392|ref|YP_004003729.1| - 0.035 14.2 10.6 0.06 13.5 6.6 2.0 1 1 0 1 1 1 0 Syntaxin BLOC1_2 PF10046.4 gi|312136392|ref|YP_004003729.1| - 0.037 14.1 12.0 0.37 10.9 2.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 WXG100 PF06013.7 gi|312136392|ref|YP_004003729.1| - 0.04 13.9 2.2 1.5 8.8 0.2 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF1843 PF08898.5 gi|312136392|ref|YP_004003729.1| - 0.042 13.8 2.9 0.41 10.7 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) Val_tRNA-synt_C PF10458.4 gi|312136392|ref|YP_004003729.1| - 0.043 13.8 8.0 0.1 12.6 0.9 2.8 2 1 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm DUF3007 PF11460.3 gi|312136392|ref|YP_004003729.1| - 0.052 13.6 0.6 0.35 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Snapin_Pallidin PF14712.1 gi|312136392|ref|YP_004003729.1| - 0.054 13.8 5.7 0.093 13.0 0.5 2.3 2 0 0 2 2 2 0 Snapin/Pallidin PilJ PF13675.1 gi|312136392|ref|YP_004003729.1| - 0.058 13.7 0.4 3 8.2 0.1 2.1 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term TipAS PF07739.8 gi|312136392|ref|YP_004003729.1| - 0.064 13.5 0.9 0.11 12.7 0.1 1.7 2 0 0 2 2 1 0 TipAS antibiotic-recognition domain GAS PF13851.1 gi|312136392|ref|YP_004003729.1| - 0.064 12.4 12.5 0.077 12.1 3.6 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|312136392|ref|YP_004003729.1| - 0.073 11.7 12.2 0.025 13.2 2.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein FlxA PF14282.1 gi|312136392|ref|YP_004003729.1| - 0.086 12.7 12.2 1.1 9.2 1.7 2.2 2 0 0 2 2 2 0 FlxA-like protein Syntaxin-6_N PF09177.6 gi|312136392|ref|YP_004003729.1| - 0.087 13.2 4.6 0.15 12.4 0.3 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal MbeD_MobD PF04899.7 gi|312136392|ref|YP_004003729.1| - 0.093 12.6 1.8 0.16 11.9 0.3 2.0 2 0 0 2 2 1 0 MbeD/MobD like DUF1664 PF07889.7 gi|312136392|ref|YP_004003729.1| - 0.099 12.4 9.8 0.1 12.3 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4140 PF13600.1 gi|312136392|ref|YP_004003729.1| - 0.1 13.0 7.4 0.32 11.4 0.6 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3578 PF12102.3 gi|312136392|ref|YP_004003729.1| - 0.12 11.9 1.5 0.68 9.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3578) Cob_adeno_trans PF01923.13 gi|312136392|ref|YP_004003729.1| - 0.13 12.0 2.9 0.33 10.7 0.1 2.0 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Seryl_tRNA_N PF02403.17 gi|312136392|ref|YP_004003729.1| - 0.14 12.2 14.4 0.049 13.6 3.6 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF479 PF04336.7 gi|312136392|ref|YP_004003729.1| - 0.15 12.2 0.4 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF479 Reo_sigmaC PF04582.7 gi|312136392|ref|YP_004003729.1| - 0.15 11.1 1.2 0.71 8.9 0.1 1.9 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Mnd1 PF03962.10 gi|312136392|ref|YP_004003729.1| - 0.16 11.6 8.2 0.16 11.5 1.4 2.1 2 0 0 2 2 2 0 Mnd1 family UPF0449 PF15136.1 gi|312136392|ref|YP_004003729.1| - 0.18 12.0 6.9 0.14 12.3 0.7 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 DNA_primase_lrg PF04104.9 gi|312136392|ref|YP_004003729.1| - 0.19 10.9 2.3 0.53 9.5 0.1 1.9 2 0 0 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit COG5 PF10392.4 gi|312136392|ref|YP_004003729.1| - 0.2 11.6 4.5 0.09 12.7 0.6 2.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 APG6 PF04111.7 gi|312136392|ref|YP_004003729.1| - 0.21 10.6 10.7 0.059 12.4 1.1 2.0 2 0 0 2 2 2 0 Autophagy protein Apg6 GST_C_3 PF14497.1 gi|312136392|ref|YP_004003729.1| - 0.22 11.9 0.7 0.31 11.5 0.3 1.7 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Effector_1 PF04518.7 gi|312136392|ref|YP_004003729.1| - 0.24 10.3 5.7 1.8 7.4 0.2 2.0 1 1 1 2 2 2 0 Effector from type III secretion system ApoLp-III PF07464.6 gi|312136392|ref|YP_004003729.1| - 0.25 11.3 6.9 0.22 11.5 1.5 2.2 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Syntaxin_2 PF14523.1 gi|312136392|ref|YP_004003729.1| - 0.26 11.3 5.1 0.36 10.8 1.1 2.2 2 0 0 2 2 2 0 Syntaxin-like protein CesA PF11439.3 gi|312136392|ref|YP_004003729.1| - 0.28 11.1 7.7 0.69 9.8 0.1 2.8 2 2 1 3 3 3 0 Type III secretion system filament chaperone CesA Tweety PF04906.8 gi|312136392|ref|YP_004003729.1| - 0.32 9.3 1.9 4.2 5.6 0.1 2.0 2 0 0 2 2 2 0 Tweety DUF972 PF06156.8 gi|312136392|ref|YP_004003729.1| - 0.33 11.3 7.0 0.32 11.3 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) IL2 PF00715.12 gi|312136392|ref|YP_004003729.1| - 0.34 10.6 1.9 4.9 6.8 0.1 2.2 2 0 0 2 2 2 0 Interleukin 2 DUF1351 PF07083.6 gi|312136392|ref|YP_004003729.1| - 0.35 10.4 7.2 0.37 10.3 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) Fmp27_WPPW PF10359.4 gi|312136392|ref|YP_004003729.1| - 0.35 9.2 5.2 0.41 8.9 0.6 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain SlyX PF04102.7 gi|312136392|ref|YP_004003729.1| - 0.37 11.1 5.5 0.62 10.4 0.3 2.3 2 0 0 2 2 2 0 SlyX Fib_alpha PF08702.5 gi|312136392|ref|YP_004003729.1| - 0.38 10.8 6.0 0.57 10.2 0.5 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family CASP_C PF08172.7 gi|312136392|ref|YP_004003729.1| - 0.39 9.7 7.7 0.68 8.9 5.4 1.6 1 1 0 1 1 1 0 CASP C terminal PEP-utilisers_N PF05524.8 gi|312136392|ref|YP_004003729.1| - 0.4 10.4 3.0 0.69 9.7 0.2 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF4446 PF14584.1 gi|312136392|ref|YP_004003729.1| - 0.41 10.4 7.3 0.27 11.0 1.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) GvpK PF05121.7 gi|312136392|ref|YP_004003729.1| - 0.43 10.4 3.2 0.54 10.1 0.1 2.3 2 0 0 2 2 2 0 Gas vesicle protein K Tropomyosin_1 PF12718.2 gi|312136392|ref|YP_004003729.1| - 0.44 10.3 12.7 0.087 12.6 2.0 2.1 2 0 0 2 2 2 0 Tropomyosin like DASH_Dad3 PF08656.5 gi|312136392|ref|YP_004003729.1| - 0.44 10.2 4.9 0.48 10.1 0.5 2.5 2 1 0 2 2 2 0 DASH complex subunit Dad3 YlqD PF11068.3 gi|312136392|ref|YP_004003729.1| - 0.45 10.5 8.0 0.29 11.1 1.3 2.2 2 0 0 2 2 2 0 YlqD protein MerR-DNA-bind PF09278.6 gi|312136392|ref|YP_004003729.1| - 0.45 10.9 10.3 0.63 10.4 1.6 2.9 2 2 0 2 2 2 0 MerR, DNA binding Nup54 PF13874.1 gi|312136392|ref|YP_004003729.1| - 0.46 10.1 6.5 0.19 11.3 0.8 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 FliD_C PF07195.7 gi|312136392|ref|YP_004003729.1| - 0.46 9.7 5.0 0.27 10.4 0.6 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF4200 PF13863.1 gi|312136392|ref|YP_004003729.1| - 0.48 10.3 14.6 0.15 11.9 3.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) bZIP_Maf PF03131.12 gi|312136392|ref|YP_004003729.1| - 0.49 10.7 5.9 0.52 10.6 1.5 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF4618 PF15397.1 gi|312136392|ref|YP_004003729.1| - 0.51 9.6 9.4 0.06 12.6 1.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Ax_dynein_light PF10211.4 gi|312136392|ref|YP_004003729.1| - 0.53 10.1 8.5 0.15 11.8 1.1 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain Init_tRNA_PT PF04179.7 gi|312136392|ref|YP_004003729.1| - 0.55 9.0 3.8 0.63 8.8 2.6 1.0 1 0 0 1 1 1 0 Initiator tRNA phosphoribosyl transferase Spectrin PF00435.16 gi|312136392|ref|YP_004003729.1| - 0.55 10.5 5.0 1.4 9.2 0.3 2.4 2 0 0 2 2 2 0 Spectrin repeat DUF3713 PF12506.3 gi|312136392|ref|YP_004003729.1| - 0.56 10.2 5.7 4.1 7.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3713) Atg14 PF10186.4 gi|312136392|ref|YP_004003729.1| - 0.61 8.9 12.2 0.34 9.7 2.9 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_23 PF13476.1 gi|312136392|ref|YP_004003729.1| - 0.64 10.2 13.2 5.2 7.3 9.1 1.9 1 1 0 1 1 1 0 AAA domain CCDC155 PF14662.1 gi|312136392|ref|YP_004003729.1| - 0.65 9.5 10.0 0.073 12.6 1.4 2.1 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 FlaC_arch PF05377.6 gi|312136392|ref|YP_004003729.1| - 0.67 9.8 12.3 1.4 8.9 2.3 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Fzo_mitofusin PF04799.8 gi|312136392|ref|YP_004003729.1| - 0.7 9.2 5.2 0.91 8.8 0.3 2.1 2 0 0 2 2 2 0 fzo-like conserved region Nsp1_C PF05064.8 gi|312136392|ref|YP_004003729.1| - 0.76 9.4 7.0 4 7.1 0.3 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region TBPIP PF07106.8 gi|312136392|ref|YP_004003729.1| - 0.79 9.2 13.9 1.2 8.6 3.4 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin_3 PF13758.1 gi|312136392|ref|YP_004003729.1| - 0.81 9.5 4.9 0.66 9.7 1.5 2.0 1 1 1 2 2 2 0 Prefoldin subunit DUF607 PF04678.8 gi|312136392|ref|YP_004003729.1| - 0.82 9.5 4.7 0.51 10.2 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF607 DUF3450 PF11932.3 gi|312136392|ref|YP_004003729.1| - 0.84 8.8 4.5 1.3 8.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Prominin PF05478.6 gi|312136392|ref|YP_004003729.1| - 0.88 7.0 7.5 0.14 9.6 0.8 1.9 2 0 0 2 2 2 0 Prominin ATG16 PF08614.6 gi|312136392|ref|YP_004003729.1| - 0.88 9.3 10.9 0.069 12.9 1.3 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF2175 PF09943.4 gi|312136392|ref|YP_004003729.1| - 0.9 9.6 5.5 0.99 9.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) DUF2205 PF10224.4 gi|312136392|ref|YP_004003729.1| - 0.93 9.1 11.0 0.077 12.5 2.4 2.1 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) CorA PF01544.13 gi|312136392|ref|YP_004003729.1| - 0.95 8.4 3.4 2 7.3 2.4 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2317 PF10079.4 gi|312136392|ref|YP_004003729.1| - 0.99 7.9 4.5 0.23 10.0 0.5 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF1043 PF06295.7 gi|312136392|ref|YP_004003729.1| - 1 9.0 4.4 0.34 10.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) Streptin-Immun PF11083.3 gi|312136392|ref|YP_004003729.1| - 1 9.3 7.3 1.7 8.6 0.5 2.4 2 1 0 2 2 2 0 Lantibiotic streptin immunity protein AAA_13 PF13166.1 gi|312136392|ref|YP_004003729.1| - 1 7.7 11.2 3.1 6.1 7.7 1.6 1 1 0 1 1 1 0 AAA domain DUF2408 PF10303.4 gi|312136392|ref|YP_004003729.1| - 1.1 9.4 6.3 0.92 9.6 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) XhlA PF10779.4 gi|312136392|ref|YP_004003729.1| - 1.2 9.1 12.3 0.22 11.4 2.6 2.4 2 0 0 2 2 2 0 Haemolysin XhlA COG2 PF06148.6 gi|312136392|ref|YP_004003729.1| - 1.2 9.0 7.7 2.1 8.1 1.6 2.8 2 2 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1319 PF07028.6 gi|312136392|ref|YP_004003729.1| - 1.2 9.2 9.7 0.74 10.0 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) DUF148 PF02520.12 gi|312136392|ref|YP_004003729.1| - 1.3 8.8 6.2 1.6 8.5 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF148 FliD_N PF02465.13 gi|312136392|ref|YP_004003729.1| - 1.3 9.4 5.6 5.6 7.3 0.0 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Apolipoprotein PF01442.13 gi|312136392|ref|YP_004003729.1| - 1.7 8.0 8.4 1.1 8.7 1.3 2.2 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain DUF342 PF03961.8 gi|312136392|ref|YP_004003729.1| - 2 6.7 12.8 0.25 9.6 3.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF904 PF06005.7 gi|312136392|ref|YP_004003729.1| - 2 8.7 9.8 1.6 9.0 2.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Cortex-I_coil PF09304.5 gi|312136392|ref|YP_004003729.1| - 2.1 8.4 10.6 2.1 8.4 1.9 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil MRP-L28 PF09812.4 gi|312136392|ref|YP_004003729.1| - 2.1 8.1 7.5 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 CDC37_N PF03234.9 gi|312136392|ref|YP_004003729.1| - 2.3 8.4 8.1 4.2 7.6 5.6 1.5 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Sas10_Utp3 PF04000.10 gi|312136392|ref|YP_004003729.1| - 3.1 8.0 7.5 19 5.5 2.4 3.3 2 2 0 2 2 2 0 Sas10/Utp3/C1D family DUF4337 PF14235.1 gi|312136392|ref|YP_004003729.1| - 3.4 7.4 9.8 1.5 8.6 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Bap31 PF05529.7 gi|312136392|ref|YP_004003729.1| - 3.5 7.0 12.1 0.49 9.8 2.5 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like DUF2968 PF11180.3 gi|312136392|ref|YP_004003729.1| - 3.6 6.9 7.0 7.7 5.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) bZIP_1 PF00170.16 gi|312136392|ref|YP_004003729.1| - 3.7 7.5 13.7 2 8.4 4.2 2.4 2 0 0 2 2 2 0 bZIP transcription factor DUF241 PF03087.9 gi|312136392|ref|YP_004003729.1| - 4.2 6.8 11.0 0.17 11.3 1.8 2.0 2 0 0 2 2 2 0 Arabidopsis protein of unknown function Takusan PF04822.8 gi|312136392|ref|YP_004003729.1| - 4.2 7.1 7.6 0.39 10.5 1.1 2.2 2 0 0 2 2 2 0 Takusan TPR_MLP1_2 PF07926.7 gi|312136392|ref|YP_004003729.1| - 4.4 7.0 15.0 9.8 5.9 0.8 2.6 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Cep57_MT_bd PF06657.8 gi|312136392|ref|YP_004003729.1| - 5.3 7.0 10.2 0.76 9.7 2.1 2.5 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 APG17 PF04108.7 gi|312136392|ref|YP_004003729.1| - 5.5 5.6 8.9 3.8 6.2 1.2 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 Bacillus_HBL PF05791.6 gi|312136392|ref|YP_004003729.1| - 5.5 6.3 7.8 0.82 9.0 0.9 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) V_ATPase_I PF01496.14 gi|312136392|ref|YP_004003729.1| - 5.8 4.6 9.3 3.4 5.4 2.4 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|312136392|ref|YP_004003729.1| - 6.2 6.7 19.5 0.28 11.0 5.2 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding ACCA PF03255.9 gi|312136392|ref|YP_004003729.1| - 7.3 6.1 6.5 1.7 8.1 0.9 2.0 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Tnp_P_element PF12017.3 gi|312136392|ref|YP_004003729.1| - 7.5 5.7 7.3 7 5.8 1.4 2.0 1 1 1 2 2 2 0 Transposase protein DUF1090 PF06476.7 gi|312136392|ref|YP_004003729.1| - 8.6 6.0 13.8 1.1 8.9 5.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) DivIVA PF05103.8 gi|312136392|ref|YP_004003729.1| - 9 6.3 11.6 2.9 7.9 1.6 2.2 2 0 0 2 2 2 0 DivIVA protein Ribosomal_L18ae PF01775.12 gi|312136393|ref|YP_004003730.1| - 5.5e-12 45.6 0.3 6.5e-12 45.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Transcrip_act PF04949.8 gi|312136393|ref|YP_004003730.1| - 0.036 13.7 1.0 0.04 13.5 0.7 1.2 1 0 0 1 1 1 0 Transcriptional activator Lipoprotein_Ltp PF07553.6 gi|312136393|ref|YP_004003730.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein GCR1_C PF12550.3 gi|312136393|ref|YP_004003730.1| - 0.18 11.7 0.9 0.22 11.3 0.6 1.4 1 1 0 1 1 1 0 Transcriptional activator of glycolytic enzymes eIF-6 PF01912.13 gi|312136394|ref|YP_004003731.1| - 2e-66 222.8 8.3 3e-66 222.3 5.0 1.6 1 1 1 2 2 2 2 eIF-6 family Ribosomal_L31e PF01198.14 gi|312136395|ref|YP_004003732.1| - 8.1e-28 95.9 5.5 9.3e-28 95.7 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e N-glycanase_N PF09112.5 gi|312136395|ref|YP_004003732.1| - 0.068 12.5 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Peptide-N-glycosidase F, N terminal Ribosomal_L39 PF00832.15 gi|312136396|ref|YP_004003733.1| - 2.9e-21 74.6 14.4 3.6e-21 74.3 10.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.16 gi|312136397|ref|YP_004003734.1| - 5.1e-07 29.4 0.0 7.7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|312136397|ref|YP_004003734.1| - 6.6e-06 25.5 0.0 9.3e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|312136397|ref|YP_004003734.1| - 0.003 16.9 0.8 0.023 14.0 0.1 2.4 1 1 1 3 3 3 1 ATP-binding region ATP_bind_3 PF01171.15 gi|312136397|ref|YP_004003734.1| - 0.014 14.8 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.11 gi|312136397|ref|YP_004003734.1| - 0.031 12.8 0.1 0.054 12.0 0.1 1.4 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.9 gi|312136397|ref|YP_004003734.1| - 0.079 12.4 0.2 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) dsDNA_bind PF01984.15 gi|312136398|ref|YP_004003735.1| - 6.5e-26 90.4 21.3 7.3e-26 90.2 14.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SurA_N PF09312.6 gi|312136398|ref|YP_004003735.1| - 0.27 11.1 7.4 1.4 8.7 5.1 2.0 1 1 0 1 1 1 0 SurA N-terminal domain HDV_ag PF01517.13 gi|312136398|ref|YP_004003735.1| - 0.38 10.4 11.0 0.59 9.7 2.7 2.0 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen DUF29 PF01724.11 gi|312136398|ref|YP_004003735.1| - 2.9 7.7 9.3 7 6.4 6.4 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF29 Mt_ATP-synt_B PF05405.9 gi|312136398|ref|YP_004003735.1| - 7.6 5.9 9.2 10 5.5 4.6 2.0 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Ribosomal_S19e PF01090.14 gi|312136399|ref|YP_004003736.1| - 3e-61 204.9 0.0 3.3e-61 204.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|312136399|ref|YP_004003736.1| - 0.00057 19.4 0.0 0.032 13.8 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus HTH_45 PF14947.1 gi|312136399|ref|YP_004003736.1| - 0.0015 18.3 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|312136399|ref|YP_004003736.1| - 0.062 13.3 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 HemN C-terminal domain DUF3653 PF12375.3 gi|312136399|ref|YP_004003736.1| - 0.089 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Phage protein HTH_12 PF08461.5 gi|312136399|ref|YP_004003736.1| - 0.17 11.6 0.9 0.52 10.0 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain CRS1_YhbY PF01985.16 gi|312136400|ref|YP_004003737.1| - 5e-19 68.0 3.9 5.9e-19 67.8 2.7 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain ProQ PF04352.8 gi|312136400|ref|YP_004003737.1| - 0.0015 18.0 0.1 0.0018 17.9 0.1 1.2 1 0 0 1 1 1 1 ProQ/FINO family Ribosomal_L10 PF00466.15 gi|312136400|ref|YP_004003737.1| - 0.0021 17.9 4.1 0.0039 17.0 2.8 1.5 1 1 0 1 1 1 1 Ribosomal protein L10 EcoR124_C PF12008.3 gi|312136400|ref|YP_004003737.1| - 0.0039 16.4 2.2 0.0039 16.4 1.5 1.0 1 0 0 1 1 1 1 Type I restriction and modification enzyme - subunit R C terminal CUT PF02376.10 gi|312136400|ref|YP_004003737.1| - 0.019 14.7 0.1 0.023 14.5 0.1 1.3 1 0 0 1 1 1 0 CUT domain KH_3 PF13014.1 gi|312136400|ref|YP_004003737.1| - 0.26 10.9 6.2 2 8.1 0.0 2.8 2 1 0 3 3 3 0 KH domain Rpr2 PF04032.11 gi|312136401|ref|YP_004003738.1| - 3.1e-21 75.0 0.3 4.7e-21 74.4 0.2 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.2 gi|312136401|ref|YP_004003738.1| - 0.036 13.8 0.1 0.055 13.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|312136401|ref|YP_004003738.1| - 0.04 13.4 0.3 0.04 13.4 0.2 2.1 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF951) C1_1 PF00130.17 gi|312136401|ref|YP_004003738.1| - 0.055 13.2 0.6 0.099 12.3 0.4 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.1 gi|312136401|ref|YP_004003738.1| - 0.19 11.3 0.1 0.19 11.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|312136401|ref|YP_004003738.1| - 0.32 10.3 0.0 0.32 10.3 0.0 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|312136401|ref|YP_004003738.1| - 0.39 10.4 0.2 0.39 10.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3133 PF11331.3 gi|312136401|ref|YP_004003738.1| - 0.56 9.8 3.8 0.36 10.4 1.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) SBP PF03110.9 gi|312136401|ref|YP_004003738.1| - 2.5 8.3 7.2 6.8 6.9 1.0 2.3 1 1 1 2 2 2 0 SBP domain AAA_18 PF13238.1 gi|312136402|ref|YP_004003739.1| - 1.5e-27 96.4 0.4 2.2e-27 95.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312136402|ref|YP_004003739.1| - 5.4e-19 69.1 0.2 1.1e-18 68.1 0.1 1.5 1 1 1 2 2 1 1 AAA domain SKI PF01202.17 gi|312136402|ref|YP_004003739.1| - 1.5e-07 31.3 0.3 4.6e-06 26.5 0.2 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|312136402|ref|YP_004003739.1| - 1.6e-06 28.3 0.0 2.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|312136402|ref|YP_004003739.1| - 5.3e-06 26.3 0.0 0.00011 22.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|312136402|ref|YP_004003739.1| - 6.3e-05 23.1 0.1 8.8e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|312136402|ref|YP_004003739.1| - 8.3e-05 22.3 0.9 0.00015 21.5 0.4 1.7 1 1 0 1 1 1 1 NTPase AAA_28 PF13521.1 gi|312136402|ref|YP_004003739.1| - 0.00013 22.0 0.2 0.00095 19.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|312136402|ref|YP_004003739.1| - 0.00027 20.8 0.1 0.00048 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|312136402|ref|YP_004003739.1| - 0.00033 20.0 0.2 0.043 13.1 0.1 2.3 2 1 0 2 2 2 1 Thymidylate kinase KaiC PF06745.8 gi|312136402|ref|YP_004003739.1| - 0.00055 19.1 0.2 0.0017 17.5 0.1 1.8 1 1 1 2 2 2 1 KaiC KTI12 PF08433.5 gi|312136402|ref|YP_004003739.1| - 0.00057 19.1 0.0 0.00085 18.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|312136402|ref|YP_004003739.1| - 0.00084 19.4 0.1 0.002 18.2 0.0 1.7 1 1 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|312136402|ref|YP_004003739.1| - 0.0014 17.8 0.1 0.0028 16.7 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_5 PF07728.9 gi|312136402|ref|YP_004003739.1| - 0.0015 18.2 0.2 0.0033 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ArsA_ATPase PF02374.10 gi|312136402|ref|YP_004003739.1| - 0.0018 17.3 1.0 0.0054 15.8 0.7 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase RuvB_N PF05496.7 gi|312136402|ref|YP_004003739.1| - 0.0022 17.1 0.0 0.0029 16.6 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus APS_kinase PF01583.15 gi|312136402|ref|YP_004003739.1| - 0.0027 17.3 0.1 0.0033 17.0 0.1 1.5 1 1 0 1 1 1 1 Adenylylsulphate kinase AAA_3 PF07726.6 gi|312136402|ref|YP_004003739.1| - 0.0069 15.9 0.1 0.043 13.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_26 PF13500.1 gi|312136402|ref|YP_004003739.1| - 0.0089 15.6 1.4 0.1 12.2 0.3 2.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|312136402|ref|YP_004003739.1| - 0.011 15.7 0.1 0.015 15.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|312136402|ref|YP_004003739.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ADK PF00406.17 gi|312136402|ref|YP_004003739.1| - 0.013 15.3 0.1 0.35 10.7 0.1 2.6 1 1 1 2 2 2 0 Adenylate kinase Rad17 PF03215.10 gi|312136402|ref|YP_004003739.1| - 0.015 13.9 0.1 0.023 13.3 0.1 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mur_ligase_M PF08245.7 gi|312136402|ref|YP_004003739.1| - 0.019 15.0 0.2 0.026 14.5 0.2 1.3 1 0 0 1 1 1 0 Mur ligase middle domain AAA_25 PF13481.1 gi|312136402|ref|YP_004003739.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AGT PF11440.3 gi|312136402|ref|YP_004003739.1| - 0.038 12.8 0.0 0.042 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase MMR_HSR1 PF01926.18 gi|312136402|ref|YP_004003739.1| - 0.047 13.6 0.5 0.069 13.0 0.3 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|312136402|ref|YP_004003739.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|312136402|ref|YP_004003739.1| - 0.075 13.3 0.6 0.1 12.8 0.4 1.4 1 1 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|312136402|ref|YP_004003739.1| - 0.075 12.6 0.3 0.16 11.5 0.2 1.5 1 0 0 1 1 1 0 AAA domain KdpD PF02702.12 gi|312136402|ref|YP_004003739.1| - 0.087 11.9 0.2 9.7 5.2 0.0 2.5 1 1 1 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain Cytidylate_kin2 PF13189.1 gi|312136402|ref|YP_004003739.1| - 0.092 12.6 0.1 0.27 11.1 0.0 1.9 1 1 1 2 2 2 0 Cytidylate kinase-like family ATP-synt_ab PF00006.20 gi|312136402|ref|YP_004003739.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activ_2 PF14532.1 gi|312136402|ref|YP_004003739.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Zea_mays_MuDR PF05928.6 gi|312136402|ref|YP_004003739.1| - 0.11 11.8 0.5 0.2 11.0 0.2 1.5 2 0 0 2 2 2 0 Zea mays MURB-like protein (MuDR) MobB PF03205.9 gi|312136402|ref|YP_004003739.1| - 0.11 12.1 1.2 0.25 11.0 0.7 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Seryl_tRNA_N PF02403.17 gi|312136402|ref|YP_004003739.1| - 0.25 11.3 2.3 10 6.2 0.4 2.6 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain HTH_19 PF12844.2 gi|312136402|ref|YP_004003739.1| - 0.26 11.3 2.2 0.33 11.0 0.1 2.3 2 2 0 2 2 2 0 Helix-turn-helix domain CbiA PF01656.18 gi|312136402|ref|YP_004003739.1| - 1 8.7 3.4 2.3 7.5 2.4 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Thi4 PF01946.12 gi|312136403|ref|YP_004003740.1| - 1.3e-95 318.9 3.7 1.5e-95 318.6 2.5 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|312136403|ref|YP_004003740.1| - 2e-09 36.8 1.8 5.2e-07 28.9 0.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|312136403|ref|YP_004003740.1| - 2.9e-09 36.5 0.4 8.8e-09 34.9 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|312136403|ref|YP_004003740.1| - 5.2e-09 35.4 6.0 0.00026 19.9 1.3 3.0 2 1 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.1 gi|312136403|ref|YP_004003740.1| - 2.6e-08 33.7 1.4 6.9e-08 32.4 1.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|312136403|ref|YP_004003740.1| - 6.7e-05 22.8 0.6 9.5e-05 22.3 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312136403|ref|YP_004003740.1| - 0.00083 17.9 1.7 0.0012 17.4 0.7 1.7 1 1 1 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|312136403|ref|YP_004003740.1| - 0.00084 19.4 0.3 0.0021 18.1 0.1 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|312136403|ref|YP_004003740.1| - 0.0012 18.0 0.0 0.002 17.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.19 gi|312136403|ref|YP_004003740.1| - 0.0086 15.1 0.1 0.046 12.7 0.1 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|312136403|ref|YP_004003740.1| - 0.0089 14.9 0.7 0.0089 14.9 0.5 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|312136403|ref|YP_004003740.1| - 0.047 13.4 0.5 0.12 12.1 0.3 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding BPL_LplA_LipB PF03099.14 gi|312136403|ref|YP_004003740.1| - 0.054 13.4 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Trp_halogenase PF04820.9 gi|312136403|ref|YP_004003740.1| - 0.19 10.3 0.7 0.97 7.9 0.3 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|312136403|ref|YP_004003740.1| - 0.27 11.6 2.9 0.52 10.7 0.3 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase MMR_HSR1 PF01926.18 gi|312136404|ref|YP_004003741.1| - 2.4e-23 82.2 1.2 8.1e-23 80.5 0.1 2.2 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|312136404|ref|YP_004003741.1| - 4.8e-23 80.7 0.0 1.1e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|312136404|ref|YP_004003741.1| - 2e-16 59.6 0.2 2e-16 59.6 0.1 2.2 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|312136404|ref|YP_004003741.1| - 3.5e-05 23.6 0.3 0.23 11.2 0.1 2.9 2 1 1 3 3 3 2 Dynamin family Arf PF00025.16 gi|312136404|ref|YP_004003741.1| - 8.9e-05 21.7 0.6 0.00091 18.5 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family Miro PF08477.8 gi|312136404|ref|YP_004003741.1| - 0.00015 22.2 0.1 0.00088 19.7 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|312136404|ref|YP_004003741.1| - 0.00054 19.5 0.1 0.27 10.7 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|312136404|ref|YP_004003741.1| - 0.00085 18.5 0.6 0.0018 17.5 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|312136404|ref|YP_004003741.1| - 0.00093 18.0 0.3 0.0027 16.5 0.1 1.9 2 0 0 2 2 2 1 ArgK protein cobW PF02492.14 gi|312136404|ref|YP_004003741.1| - 0.0018 17.7 2.4 0.22 10.9 0.1 3.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|312136404|ref|YP_004003741.1| - 0.0029 16.8 0.0 0.0055 15.9 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|312136404|ref|YP_004003741.1| - 0.012 14.6 0.1 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 AIG1 family Ras PF00071.17 gi|312136404|ref|YP_004003741.1| - 0.014 14.8 0.9 0.59 9.5 0.0 2.5 2 0 0 2 2 2 0 Ras family AAA_18 PF13238.1 gi|312136404|ref|YP_004003741.1| - 0.016 15.5 0.2 0.045 14.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|312136404|ref|YP_004003741.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DinI PF06183.8 gi|312136404|ref|YP_004003741.1| - 0.036 14.0 0.1 14 5.8 0.0 2.9 2 1 0 2 2 2 0 DinI-like family MCM PF00493.18 gi|312136404|ref|YP_004003741.1| - 0.045 12.5 0.4 0.089 11.5 0.0 1.6 2 0 0 2 2 2 0 MCM2/3/5 family PduV-EutP PF10662.4 gi|312136404|ref|YP_004003741.1| - 0.071 12.5 0.4 9.6 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|312136404|ref|YP_004003741.1| - 0.075 12.7 0.1 0.22 11.2 0.1 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.22 gi|312136404|ref|YP_004003741.1| - 0.081 12.3 6.5 2 7.8 0.5 3.7 2 2 1 3 3 3 0 Elongation factor Tu GTP binding domain NB-ARC PF00931.17 gi|312136404|ref|YP_004003741.1| - 0.11 11.3 1.5 0.41 9.4 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.1 gi|312136404|ref|YP_004003741.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain STT3 PF02516.9 gi|312136405|ref|YP_004003742.1| - 1.8e-98 330.6 29.0 2.3e-98 330.2 20.1 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Staphostatin_A PF09022.5 gi|312136405|ref|YP_004003742.1| - 0.063 13.1 1.5 0.14 11.9 1.0 1.5 1 0 0 1 1 1 0 Staphostatin A YL1_C PF08265.6 gi|312136405|ref|YP_004003742.1| - 0.088 12.3 0.6 0.18 11.3 0.4 1.4 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain PMT_2 PF13231.1 gi|312136405|ref|YP_004003742.1| - 2.6 7.9 48.1 0.034 14.0 18.0 4.0 4 1 0 4 4 4 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Topoisom_bac PF01131.15 gi|312136406|ref|YP_004003743.1| - 5.9e-116 387.6 6.4 1.1e-115 386.6 4.5 1.5 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|312136406|ref|YP_004003743.1| - 1.8e-23 81.7 31.1 2.1e-15 55.8 3.8 3.7 3 1 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|312136406|ref|YP_004003743.1| - 2.8e-13 49.6 0.1 2.8e-13 49.6 0.1 3.1 3 1 0 3 3 3 1 Toprim domain RNA_POL_M_15KD PF02150.11 gi|312136406|ref|YP_004003743.1| - 0.0086 15.7 0.3 0.046 13.3 0.2 2.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit ADK_lid PF05191.9 gi|312136406|ref|YP_004003743.1| - 0.019 14.6 9.8 2.8 7.6 0.0 3.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid DZR PF12773.2 gi|312136406|ref|YP_004003743.1| - 0.11 12.3 2.6 0.6 9.9 1.8 2.1 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312136406|ref|YP_004003743.1| - 0.27 10.7 9.6 0.43 10.1 3.0 3.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|312136406|ref|YP_004003743.1| - 0.97 8.7 6.1 2 7.7 1.2 2.9 2 1 0 2 2 2 0 zinc-ribbon domain HAD PF12710.2 gi|312136407|ref|YP_004003744.1| - 2.3e-17 63.7 0.1 2.3e-17 63.7 0.1 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|312136407|ref|YP_004003744.1| - 2e-13 51.2 0.1 2e-13 51.2 0.0 2.7 2 2 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|312136407|ref|YP_004003744.1| - 9.7e-11 41.7 0.2 9.7e-11 41.7 0.1 5.0 3 1 1 5 5 5 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|312136407|ref|YP_004003744.1| - 2.5e-05 24.5 1.7 0.00025 21.3 0.0 3.0 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|312136407|ref|YP_004003744.1| - 0.073 12.9 2.6 0.44 10.4 0.0 3.2 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase B12-binding PF02310.14 gi|312136407|ref|YP_004003744.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain GvpK PF05121.7 gi|312136407|ref|YP_004003744.1| - 1.5 8.6 8.7 6.8 6.5 0.5 3.7 4 0 0 4 4 4 0 Gas vesicle protein K TBP PF00352.16 gi|312136408|ref|YP_004003745.1| - 6e-67 221.0 0.1 3.3e-34 116.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|312136408|ref|YP_004003745.1| - 7e-05 22.8 0.0 0.32 11.0 0.0 2.4 1 1 0 2 2 2 2 Domain of unknown function (DUF3378) DUF2067 PF09840.4 gi|312136408|ref|YP_004003745.1| - 0.0041 16.6 0.2 0.018 14.5 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2067) YbbR PF07949.7 gi|312136408|ref|YP_004003745.1| - 0.0076 16.3 0.7 0.64 10.1 0.1 2.4 2 0 0 2 2 2 1 YbbR-like protein Bromodomain PF00439.20 gi|312136408|ref|YP_004003745.1| - 0.021 14.7 0.2 1.3 8.9 0.0 2.3 1 1 1 2 2 2 0 Bromodomain DUF1837 PF08878.6 gi|312136408|ref|YP_004003745.1| - 0.066 12.8 0.0 0.094 12.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1837) tRNA_anti-codon PF01336.20 gi|312136409|ref|YP_004003746.1| - 1.3e-49 165.9 28.4 1.3e-12 47.3 0.1 7.0 7 0 0 7 7 7 6 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|312136409|ref|YP_004003746.1| - 2.5e-11 43.4 0.9 4.7e-07 29.6 0.0 5.0 5 0 0 5 5 5 1 Replication factor-A C terminal domain zf-ribbon_3 PF13248.1 gi|312136409|ref|YP_004003746.1| - 0.001 18.2 0.9 0.0019 17.3 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain tRNA_anti_2 PF13742.1 gi|312136409|ref|YP_004003746.1| - 0.0011 18.8 0.0 32 4.4 0.0 4.9 5 0 0 5 5 5 0 OB-fold nucleic acid binding domain zinc_ribbon_2 PF13240.1 gi|312136409|ref|YP_004003746.1| - 0.054 12.9 1.9 0.11 12.0 1.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|312136409|ref|YP_004003746.1| - 0.1 12.4 0.7 0.19 11.5 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|312136409|ref|YP_004003746.1| - 0.27 10.5 4.6 0.69 9.2 3.2 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding SH3_2 PF07653.12 gi|312136409|ref|YP_004003746.1| - 0.81 9.2 4.3 10 5.6 0.0 3.6 5 0 0 5 5 5 0 Variant SH3 domain DUF2098 PF09871.4 gi|312136409|ref|YP_004003746.1| - 1.4 8.9 9.8 6.2 6.8 0.1 3.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) HIN PF02760.10 gi|312136409|ref|YP_004003746.1| - 1.7 7.9 10.5 3.5 6.9 0.2 4.2 4 1 0 4 4 4 0 HIN-200/IF120x domain zf-dskA_traR PF01258.12 gi|312136409|ref|YP_004003746.1| - 3.3 7.5 5.7 8.3 6.2 0.7 2.6 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Rad51 PF08423.6 gi|312136410|ref|YP_004003747.1| - 4.9e-97 323.8 0.3 5.9e-97 323.5 0.2 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|312136410|ref|YP_004003747.1| - 9.6e-13 47.8 0.5 1.3e-12 47.4 0.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|312136410|ref|YP_004003747.1| - 1.3e-12 47.5 0.1 2.3e-12 46.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|312136410|ref|YP_004003747.1| - 6.6e-12 45.0 0.2 1.1e-11 44.3 0.1 1.4 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|312136410|ref|YP_004003747.1| - 6.4e-09 35.8 1.8 6.4e-09 35.8 1.2 2.1 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|312136410|ref|YP_004003747.1| - 3.6e-07 29.9 1.3 1.5e-06 27.9 0.2 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|312136410|ref|YP_004003747.1| - 1.1e-05 25.5 0.1 1.9e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain CobU PF02283.11 gi|312136410|ref|YP_004003747.1| - 8.7e-05 21.9 0.2 0.00088 18.7 0.2 2.2 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase Cdd1 PF11731.3 gi|312136410|ref|YP_004003747.1| - 0.00011 22.0 0.0 0.00027 20.8 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus AAA_24 PF13479.1 gi|312136410|ref|YP_004003747.1| - 0.0074 15.8 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|312136410|ref|YP_004003747.1| - 0.0085 14.4 0.0 0.011 14.1 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|312136410|ref|YP_004003747.1| - 0.0088 15.7 0.2 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase HHH PF00633.18 gi|312136410|ref|YP_004003747.1| - 0.014 15.0 0.8 0.67 9.7 0.0 3.1 2 1 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|312136410|ref|YP_004003747.1| - 0.028 14.4 0.0 0.1 12.6 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif DnaB_C PF03796.10 gi|312136410|ref|YP_004003747.1| - 0.035 12.9 1.5 0.083 11.7 0.6 1.8 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.24 gi|312136410|ref|YP_004003747.1| - 0.037 14.2 0.3 0.12 12.5 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sec63 PF02889.11 gi|312136410|ref|YP_004003747.1| - 0.068 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Sec63 Brl domain HHH_8 PF14716.1 gi|312136410|ref|YP_004003747.1| - 0.15 12.2 1.7 6.7 6.9 0.0 3.5 3 1 1 4 4 4 0 Helix-hairpin-helix domain Mem_trans PF03547.13 gi|312136411|ref|YP_004003748.1| - 6.9e-45 152.9 30.1 3.6e-25 88.0 7.0 2.0 1 1 1 2 2 2 2 Membrane transport protein Na_H_Exchanger PF00999.16 gi|312136411|ref|YP_004003748.1| - 0.035 12.6 33.6 0.022 13.3 14.7 3.4 1 1 1 2 2 2 0 Sodium/hydrogen exchanger family Fer4 PF00037.22 gi|312136412|ref|YP_004003749.1| - 8.3e-24 82.1 40.2 3.3e-07 29.6 3.5 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|312136412|ref|YP_004003749.1| - 2.2e-19 70.1 3.6 1e-15 58.1 1.1 3.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|312136412|ref|YP_004003749.1| - 3.3e-15 56.2 36.4 1.9e-08 34.5 7.4 4.6 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136412|ref|YP_004003749.1| - 1.6e-14 54.4 24.3 0.00041 21.0 0.4 5.2 6 0 0 6 6 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|312136412|ref|YP_004003749.1| - 7.1e-14 51.3 34.8 9.3e-09 34.9 5.5 4.0 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136412|ref|YP_004003749.1| - 8e-12 45.2 40.5 2.4e-07 30.9 6.3 4.4 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136412|ref|YP_004003749.1| - 1.4e-10 40.4 39.7 9.7e-05 22.0 2.4 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312136412|ref|YP_004003749.1| - 1.5e-10 40.9 24.8 0.0014 18.5 0.4 4.5 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312136412|ref|YP_004003749.1| - 1.6e-10 40.6 40.7 0.00026 20.7 7.8 5.1 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136412|ref|YP_004003749.1| - 6.8e-10 38.3 51.9 5.9e-05 22.7 1.6 5.5 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312136412|ref|YP_004003749.1| - 1.9e-09 37.9 27.1 0.0006 20.3 0.4 4.9 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|312136412|ref|YP_004003749.1| - 1.8e-08 34.5 29.8 0.0039 17.4 6.9 5.0 4 1 2 6 6 6 5 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|312136412|ref|YP_004003749.1| - 6.4e-08 32.8 0.1 4.5e-05 23.7 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|312136412|ref|YP_004003749.1| - 3.4e-07 29.4 0.1 4.6e-05 22.4 0.2 2.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|312136412|ref|YP_004003749.1| - 4e-07 29.4 0.4 1.3e-06 27.7 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|312136412|ref|YP_004003749.1| - 2.7e-06 27.3 0.0 5.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_4 PF12800.2 gi|312136412|ref|YP_004003749.1| - 3.1e-06 27.0 37.9 0.0018 18.4 0.7 5.6 5 0 0 5 5 5 3 4Fe-4S binding domain GIDA PF01134.17 gi|312136412|ref|YP_004003749.1| - 4.5e-06 25.7 0.0 7.5e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|312136412|ref|YP_004003749.1| - 7.5e-06 25.0 0.1 1.2e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|312136412|ref|YP_004003749.1| - 3.6e-05 23.9 0.8 0.01 15.9 0.1 2.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312136412|ref|YP_004003749.1| - 0.00032 19.3 0.9 0.0005 18.6 0.6 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_18 PF13746.1 gi|312136412|ref|YP_004003749.1| - 0.00045 20.5 42.5 0.0015 18.8 0.7 5.0 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136412|ref|YP_004003749.1| - 0.00054 20.3 56.6 0.034 14.7 3.8 6.1 5 0 0 5 5 5 3 4Fe-4S binding domain AlaDh_PNT_C PF01262.16 gi|312136412|ref|YP_004003749.1| - 0.0016 18.0 0.0 0.0035 16.9 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|312136412|ref|YP_004003749.1| - 0.0081 15.2 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family DUF4033 PF13225.1 gi|312136412|ref|YP_004003749.1| - 0.018 14.6 2.7 0.023 14.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4033) Amino_oxidase PF01593.19 gi|312136412|ref|YP_004003749.1| - 0.021 13.9 0.0 0.054 12.5 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_13 PF13370.1 gi|312136412|ref|YP_004003749.1| - 0.037 14.4 34.5 0.08 13.3 0.6 4.9 3 1 1 4 4 4 0 4Fe-4S single cluster domain FAD_binding_3 PF01494.14 gi|312136412|ref|YP_004003749.1| - 0.039 13.0 0.3 0.064 12.3 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.1 gi|312136412|ref|YP_004003749.1| - 0.048 13.4 0.0 8.4 6.1 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|312136412|ref|YP_004003749.1| - 0.068 11.7 0.1 2.3 6.7 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_11 PF13247.1 gi|312136412|ref|YP_004003749.1| - 0.089 12.6 21.2 0.15 11.9 2.2 4.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|312136412|ref|YP_004003749.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|312136412|ref|YP_004003749.1| - 0.15 10.9 0.1 0.24 10.2 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein RseC_MucC PF04246.7 gi|312136412|ref|YP_004003749.1| - 9.8 5.7 9.0 5.5 6.5 0.8 2.8 3 0 0 3 3 2 0 Positive regulator of sigma(E), RseC/MucC DUF169 PF02596.10 gi|312136413|ref|YP_004003750.1| - 1.8e-45 154.9 0.0 2.1e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 HGD-D PF06050.8 gi|312136414|ref|YP_004003751.1| - 0.017 13.9 0.0 0.025 13.4 0.0 1.3 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Vps35 PF03635.12 gi|312136414|ref|YP_004003751.1| - 0.051 11.7 0.0 0.076 11.1 0.0 1.2 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 tRNA-synt_1f PF01921.13 gi|312136415|ref|YP_004003752.1| - 4.5e-131 436.7 0.6 4.5e-131 436.7 0.4 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|312136415|ref|YP_004003752.1| - 3.7e-06 25.8 0.0 0.00012 20.8 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (M) HTH_21 PF13276.1 gi|312136415|ref|YP_004003752.1| - 0.021 14.8 0.3 0.16 12.0 0.0 2.4 2 0 0 2 2 2 0 HTH-like domain FANCI_S3 PF14677.1 gi|312136415|ref|YP_004003752.1| - 0.03 13.6 1.2 0.047 13.0 0.8 1.3 1 0 0 1 1 1 0 FANCI solenoid 3 tRNA-synt_1e PF01406.14 gi|312136415|ref|YP_004003752.1| - 0.067 12.3 1.4 2.5 7.1 0.0 3.1 3 1 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain PS_pyruv_trans PF04230.8 gi|312136415|ref|YP_004003752.1| - 0.19 11.3 1.6 0.41 10.2 0.0 2.2 2 1 0 2 2 2 0 Polysaccharide pyruvyl transferase ThiC PF01964.13 gi|312136416|ref|YP_004003753.1| - 1.3e-190 633.3 2.6 1.5e-190 633.2 1.8 1.0 1 0 0 1 1 1 1 ThiC family PfkB PF00294.19 gi|312136417|ref|YP_004003754.1| - 2.2e-58 197.7 0.0 2.7e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_1 PF00126.22 gi|312136418|ref|YP_004003755.1| - 6.5e-08 32.2 0.0 1.4e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.1 gi|312136418|ref|YP_004003755.1| - 0.00018 20.7 0.1 0.00061 19.1 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF134 PF02001.11 gi|312136418|ref|YP_004003755.1| - 0.0093 15.8 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_3 PF01381.17 gi|312136418|ref|YP_004003755.1| - 0.011 15.5 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_10 PF04967.7 gi|312136418|ref|YP_004003755.1| - 0.032 13.7 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_17 PF12728.2 gi|312136418|ref|YP_004003755.1| - 0.082 13.1 0.0 1.5 9.1 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repr_C PF02742.10 gi|312136419|ref|YP_004003756.1| - 2.5e-28 97.5 0.1 5.4e-28 96.4 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|312136419|ref|YP_004003756.1| - 6.2e-22 77.2 0.4 1.3e-21 76.2 0.3 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|312136419|ref|YP_004003756.1| - 7.3e-10 38.6 0.1 1.1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.2 gi|312136419|ref|YP_004003756.1| - 0.064 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|312136419|ref|YP_004003756.1| - 0.099 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain PMBR PF09373.5 gi|312136420|ref|YP_004003757.1| - 1.1e-07 31.4 0.2 9.7e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 Pseudomurein-binding repeat DDE_3 PF13358.1 gi|312136420|ref|YP_004003757.1| - 0.044 13.5 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 DDE superfamily endonuclease CcdA PF07362.7 gi|312136420|ref|YP_004003757.1| - 0.1 12.4 0.5 7 6.6 0.0 2.2 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA NTP_transf_3 PF12804.2 gi|312136421|ref|YP_004003758.1| - 9.8e-37 126.4 0.0 1.1e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|312136421|ref|YP_004003758.1| - 4.5e-05 23.2 0.1 5.6e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|312136421|ref|YP_004003758.1| - 6e-05 22.6 0.0 8.3e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|312136421|ref|YP_004003758.1| - 0.00012 21.0 0.3 0.00015 20.7 0.2 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|312136421|ref|YP_004003758.1| - 0.00051 19.7 0.5 0.0012 18.4 0.3 1.8 1 1 0 1 1 1 1 Cytidylyltransferase IMPDH PF00478.20 gi|312136422|ref|YP_004003759.1| - 5.6e-141 469.5 6.4 6.4e-141 469.3 4.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|312136422|ref|YP_004003759.1| - 5.1e-33 112.5 5.9 6.1e-17 61.1 0.3 2.6 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|312136422|ref|YP_004003759.1| - 1.5e-14 53.9 11.0 5.9e-07 28.9 0.1 2.7 2 1 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|312136422|ref|YP_004003759.1| - 4.3e-14 52.1 3.1 3.1e-12 46.0 1.9 2.5 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|312136422|ref|YP_004003759.1| - 1.1e-06 27.8 2.6 1.1e-06 27.8 1.8 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|312136422|ref|YP_004003759.1| - 4.6e-05 22.8 2.4 0.00035 19.9 1.7 2.3 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|312136422|ref|YP_004003759.1| - 0.00011 21.3 1.3 0.00011 21.3 0.9 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|312136422|ref|YP_004003759.1| - 0.00057 18.8 0.1 0.0012 17.7 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|312136422|ref|YP_004003759.1| - 0.44 9.7 8.6 0.042 13.1 0.4 3.0 3 1 1 4 4 4 0 PcrB family DUF556 PF04476.8 gi|312136423|ref|YP_004003760.1| - 2.2e-114 380.5 2.9 2.4e-114 380.4 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) QRPTase_C PF01729.14 gi|312136423|ref|YP_004003760.1| - 0.00016 21.2 0.1 0.036 13.5 0.1 2.7 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain DeoC PF01791.4 gi|312136423|ref|YP_004003760.1| - 0.00039 19.7 5.5 0.0073 15.6 0.4 3.0 1 1 2 3 3 3 1 DeoC/LacD family aldolase Pterin_bind PF00809.17 gi|312136423|ref|YP_004003760.1| - 0.024 14.0 0.1 0.21 10.9 0.0 2.3 3 0 0 3 3 3 0 Pterin binding enzyme eRF1_1 PF03463.10 gi|312136423|ref|YP_004003760.1| - 0.04 13.5 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 1 Glycos_transf_1 PF00534.15 gi|312136424|ref|YP_004003761.1| - 1.5e-39 135.1 0.4 4.9e-39 133.4 0.3 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312136424|ref|YP_004003761.1| - 4.1e-19 69.0 0.0 2.9e-18 66.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312136424|ref|YP_004003761.1| - 2.9e-15 56.4 0.0 6.7e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|312136424|ref|YP_004003761.1| - 4.3e-10 39.9 0.0 5.6e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|312136424|ref|YP_004003761.1| - 0.0005 20.2 0.0 0.0019 18.4 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 PTS_IIB PF02302.12 gi|312136424|ref|YP_004003761.1| - 0.062 13.7 2.4 2.3 8.7 0.1 3.2 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF2304 PF10066.4 gi|312136425|ref|YP_004003762.1| - 1.3e-30 105.6 8.3 1.3e-30 105.5 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) 2TM PF13239.1 gi|312136425|ref|YP_004003762.1| - 5.8 7.0 8.5 1.9 8.6 4.0 1.6 1 1 0 1 1 1 0 2TM domain Glycos_transf_2 PF00535.21 gi|312136426|ref|YP_004003763.1| - 5.1e-35 120.6 0.6 6.8e-35 120.2 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312136426|ref|YP_004003763.1| - 4.2e-15 56.1 0.1 5e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|312136426|ref|YP_004003763.1| - 1.7e-05 25.0 0.1 2.8e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|312136426|ref|YP_004003763.1| - 0.00013 21.1 0.1 0.00019 20.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|312136426|ref|YP_004003763.1| - 0.0015 18.6 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Orthopox_F14 PF06076.7 gi|312136426|ref|YP_004003763.1| - 0.0015 18.5 0.2 0.21 11.6 0.0 2.5 2 0 0 2 2 2 1 Orthopoxvirus F14 protein Glyco_transf_21 PF13506.1 gi|312136426|ref|YP_004003763.1| - 0.0058 15.9 0.1 0.012 14.9 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 21 PrpR_N PF06506.6 gi|312136426|ref|YP_004003763.1| - 0.013 14.9 0.6 4.8 6.5 0.1 2.6 2 1 0 2 2 2 0 Propionate catabolism activator Fe-ADH PF00465.14 gi|312136426|ref|YP_004003763.1| - 0.03 12.9 0.6 0.29 9.7 0.1 2.0 1 1 1 2 2 2 0 Iron-containing alcohol dehydrogenase CAP59_mtransfer PF11735.3 gi|312136426|ref|YP_004003763.1| - 0.049 12.8 0.1 0.11 11.7 0.0 1.5 2 0 0 2 2 2 0 Cryptococcal mannosyltransferase 1 ATP-synt_F PF01990.12 gi|312136426|ref|YP_004003763.1| - 0.051 13.9 1.4 0.25 11.7 0.1 2.5 3 0 0 3 3 3 0 ATP synthase (F/14-kDa) subunit TIMELESS_C PF05029.8 gi|312136426|ref|YP_004003763.1| - 0.065 12.1 0.1 0.08 11.8 0.1 1.1 1 0 0 1 1 1 0 Timeless protein C terminal region ANF_receptor PF01094.23 gi|312136426|ref|YP_004003763.1| - 0.069 11.9 0.3 1.6 7.4 0.0 2.0 1 1 1 2 2 2 0 Receptor family ligand binding region Fe-ADH_2 PF13685.1 gi|312136426|ref|YP_004003763.1| - 0.12 11.6 0.7 2 7.6 0.3 2.1 1 1 1 2 2 2 0 Iron-containing alcohol dehydrogenase PIN PF01850.16 gi|312136426|ref|YP_004003763.1| - 0.16 12.2 0.7 1.5 9.1 0.4 2.3 1 1 0 1 1 1 0 PIN domain FMN_red PF03358.10 gi|312136427|ref|YP_004003764.1| - 8.2e-35 119.5 0.0 1e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|312136427|ref|YP_004003764.1| - 6.9e-11 42.0 0.0 8.7e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DMRL_synthase PF00885.14 gi|312136428|ref|YP_004003765.1| - 2e-21 76.1 0.1 2.3e-21 75.9 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase ABC_tran PF00005.22 gi|312136429|ref|YP_004003766.1| - 2.1e-35 122.0 0.0 5.7e-35 120.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|312136429|ref|YP_004003766.1| - 4.7e-19 69.4 0.3 4e-13 49.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|312136429|ref|YP_004003766.1| - 2.1e-10 40.1 0.1 4.3e-09 35.9 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|312136429|ref|YP_004003766.1| - 9.4e-07 28.2 0.9 0.0012 17.9 0.0 2.5 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|312136429|ref|YP_004003766.1| - 1.7e-05 25.2 1.8 2.4e-05 24.7 0.8 1.5 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|312136429|ref|YP_004003766.1| - 4.5e-05 22.1 0.5 0.1 11.0 0.2 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|312136429|ref|YP_004003766.1| - 0.0017 17.8 0.1 0.0029 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|312136429|ref|YP_004003766.1| - 0.0022 17.4 0.0 1.9 7.9 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_10 PF12846.2 gi|312136429|ref|YP_004003766.1| - 0.0029 17.1 0.0 0.2 11.0 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|312136429|ref|YP_004003766.1| - 0.0075 16.4 0.1 0.15 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|312136429|ref|YP_004003766.1| - 0.011 15.3 0.1 0.028 14.1 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|312136429|ref|YP_004003766.1| - 0.023 14.5 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|312136429|ref|YP_004003766.1| - 0.031 13.8 0.2 0.073 12.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|312136429|ref|YP_004003766.1| - 0.032 13.9 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|312136429|ref|YP_004003766.1| - 0.038 13.9 0.0 0.23 11.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|312136429|ref|YP_004003766.1| - 0.052 12.7 0.0 0.078 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|312136429|ref|YP_004003766.1| - 0.053 12.9 0.1 0.36 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|312136429|ref|YP_004003766.1| - 0.13 10.7 0.0 0.34 9.4 0.0 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|312136429|ref|YP_004003766.1| - 0.18 11.2 0.9 0.29 10.5 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0004 PF00919.15 gi|312136430|ref|YP_004003767.1| - 6.9e-27 93.1 0.1 1.6e-26 92.0 0.1 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|312136430|ref|YP_004003767.1| - 2.3e-24 86.4 0.6 2.3e-24 86.4 0.4 2.0 3 0 0 3 3 3 1 Radical SAM superfamily TRAM PF01938.15 gi|312136430|ref|YP_004003767.1| - 1.2e-14 53.7 1.6 2.3e-14 52.9 1.1 1.5 1 0 0 1 1 1 1 TRAM domain Tox-REase-2 PF15646.1 gi|312136430|ref|YP_004003767.1| - 0.21 11.4 3.0 1.2 8.9 0.0 3.0 3 0 0 3 3 3 0 Restriction endonuclease fold toxin 2 PCMT PF01135.14 gi|312136431|ref|YP_004003768.1| - 1.6e-75 253.2 0.0 1.9e-75 252.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|312136431|ref|YP_004003768.1| - 6.2e-09 35.6 0.0 8.1e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|312136431|ref|YP_004003768.1| - 3.6e-08 32.7 0.0 5.7e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|312136431|ref|YP_004003768.1| - 3.2e-07 30.3 0.0 4.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312136431|ref|YP_004003768.1| - 4e-07 30.6 0.0 6.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|312136431|ref|YP_004003768.1| - 1e-06 27.8 0.1 1.7e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.5 gi|312136431|ref|YP_004003768.1| - 1.2e-06 28.2 0.0 1.6e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|312136431|ref|YP_004003768.1| - 4.6e-06 25.9 0.0 6.5e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|312136431|ref|YP_004003768.1| - 1.9e-05 23.8 0.0 3.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|312136431|ref|YP_004003768.1| - 0.00037 21.2 0.0 0.00055 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312136431|ref|YP_004003768.1| - 0.00091 18.6 0.0 0.0016 17.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|312136431|ref|YP_004003768.1| - 0.0035 17.0 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|312136431|ref|YP_004003768.1| - 0.0062 15.6 0.0 0.0086 15.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Surf_Ag_VNR PF07244.10 gi|312136431|ref|YP_004003768.1| - 0.01 16.2 0.1 0.092 13.1 0.0 2.3 2 0 0 2 2 2 0 Surface antigen variable number repeat Methyltransf_32 PF13679.1 gi|312136431|ref|YP_004003768.1| - 0.02 14.6 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|312136431|ref|YP_004003768.1| - 0.046 13.2 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.4 gi|312136431|ref|YP_004003768.1| - 0.051 13.0 0.1 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase UBA PF00627.26 gi|312136431|ref|YP_004003768.1| - 0.053 13.3 0.3 0.29 11.0 0.1 2.1 2 0 0 2 2 2 0 UBA/TS-N domain Met_10 PF02475.11 gi|312136431|ref|YP_004003768.1| - 0.066 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Zn_Tnp_IS1595 PF12760.2 gi|312136432|ref|YP_004003769.1| - 0.0026 17.5 1.2 0.0064 16.2 0.8 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|312136432|ref|YP_004003769.1| - 0.015 14.6 2.3 0.063 12.6 1.6 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|312136432|ref|YP_004003769.1| - 0.049 13.5 1.7 10 6.2 0.1 2.6 3 0 0 3 3 3 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|312136432|ref|YP_004003769.1| - 0.066 12.5 0.3 0.12 11.7 0.2 1.4 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger TRAP-delta PF05404.7 gi|312136432|ref|YP_004003769.1| - 0.066 12.6 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Translocon-associated protein, delta subunit precursor (TRAP-delta) zf-ribbon_3 PF13248.1 gi|312136432|ref|YP_004003769.1| - 0.17 11.1 1.2 0.29 10.4 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain MS_channel PF00924.13 gi|312136432|ref|YP_004003769.1| - 0.22 10.8 1.9 13 5.0 0.3 2.4 2 1 0 2 2 2 0 Mechanosensitive ion channel Prim_Zn_Ribbon PF08273.7 gi|312136432|ref|YP_004003769.1| - 0.29 11.2 2.4 0.47 10.5 0.3 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zinc_ribbon_4 PF13717.1 gi|312136432|ref|YP_004003769.1| - 0.33 10.6 4.9 2.7 7.7 0.3 2.9 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|312136432|ref|YP_004003769.1| - 0.4 10.3 2.9 1.4 8.6 2.0 1.9 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|312136432|ref|YP_004003769.1| - 0.51 9.9 5.9 2.5 7.7 0.5 2.8 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|312136432|ref|YP_004003769.1| - 1.8 8.6 6.3 2.1 8.3 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2 PF00096.21 gi|312136432|ref|YP_004003769.1| - 2.8 8.4 4.6 16 6.1 1.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|312136432|ref|YP_004003769.1| - 4.1 7.8 6.7 2.4 8.6 0.5 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Aconitase_C PF00694.14 gi|312136433|ref|YP_004003770.1| - 3.3e-23 82.2 0.4 2.4e-21 76.2 0.4 2.2 1 1 1 2 2 2 2 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|312136433|ref|YP_004003770.1| - 2.2e-05 23.9 0.3 0.0005 19.5 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus GHMP_kinases_C PF08544.8 gi|312136434|ref|YP_004003771.1| - 8.9e-11 41.8 0.0 1.6e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|312136434|ref|YP_004003771.1| - 9.1e-08 32.0 0.7 3e-07 30.3 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain Raptor_N PF14538.1 gi|312136434|ref|YP_004003771.1| - 0.045 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Raptor N-terminal CASPase like domain Radical_SAM PF04055.16 gi|312136435|ref|YP_004003772.1| - 3.6e-20 72.7 1.0 7.6e-20 71.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136435|ref|YP_004003772.1| - 8.7e-09 35.6 0.0 1.9e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136435|ref|YP_004003772.1| - 9.1e-08 32.1 0.0 2.7e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF46 PF01864.12 gi|312136436|ref|YP_004003773.1| - 4.4e-61 205.7 12.2 5.7e-61 205.4 8.5 1.1 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|312136436|ref|YP_004003773.1| - 0.00018 21.2 9.1 0.00018 21.2 6.3 2.2 2 1 0 2 2 2 1 Cytidylyltransferase family Gly-zipper_Omp PF13488.1 gi|312136436|ref|YP_004003773.1| - 0.67 9.6 2.9 3.8 7.2 0.0 2.6 3 0 0 3 3 3 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|312136436|ref|YP_004003773.1| - 3.2 7.3 4.7 15 5.2 0.1 2.7 2 1 0 3 3 3 0 YMGG-like Gly-zipper Hydantoinase_A PF01968.13 gi|312136437|ref|YP_004003774.1| - 1.2e-18 67.2 1.8 5.3e-16 58.5 0.4 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|312136437|ref|YP_004003774.1| - 4.4e-05 21.9 0.1 0.008 14.5 0.0 2.3 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.8 gi|312136437|ref|YP_004003774.1| - 0.0016 17.9 2.4 0.38 10.2 0.1 2.7 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|312136437|ref|YP_004003774.1| - 0.0028 17.4 0.2 0.75 9.6 0.1 2.6 2 0 0 2 2 2 2 Cell division protein FtsA Pox_A22 PF04848.8 gi|312136437|ref|YP_004003774.1| - 0.042 13.7 0.3 0.22 11.3 0.0 2.2 2 1 0 2 2 2 0 Poxvirus A22 protein ATP-grasp_3 PF02655.9 gi|312136438|ref|YP_004003775.1| - 1.7e-42 145.0 1.2 2.5e-42 144.4 0.9 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|312136438|ref|YP_004003775.1| - 5e-15 55.7 0.0 8.2e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|312136438|ref|YP_004003775.1| - 5.7e-10 38.4 0.1 9.8e-09 34.3 0.1 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon VAD1-2 PF15310.1 gi|312136438|ref|YP_004003775.1| - 0.17 11.5 0.0 5.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Vitamin A-deficiency (VAD) rat model signalling UDPG_MGDP_dh_N PF03721.9 gi|312136439|ref|YP_004003776.1| - 2.4e-60 203.1 1.2 3.2e-60 202.6 0.5 1.4 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|312136439|ref|YP_004003776.1| - 6.8e-32 109.5 0.0 8.6e-31 106.0 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|312136439|ref|YP_004003776.1| - 1.3e-19 70.3 0.0 3.1e-18 65.8 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.14 gi|312136439|ref|YP_004003776.1| - 5.8e-10 38.5 0.9 7.6e-05 21.9 0.0 3.4 3 2 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|312136439|ref|YP_004003776.1| - 3.1e-09 36.7 0.0 7.2e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|312136439|ref|YP_004003776.1| - 8e-08 32.2 0.1 3.4e-07 30.2 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|312136439|ref|YP_004003776.1| - 1.2e-05 25.0 1.0 1.5e-05 24.7 0.1 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|312136439|ref|YP_004003776.1| - 0.00012 21.6 0.2 0.0028 17.2 0.0 2.9 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|312136439|ref|YP_004003776.1| - 0.0015 18.0 0.1 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|312136439|ref|YP_004003776.1| - 0.0017 18.7 1.3 0.0096 16.3 0.1 2.8 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Methyltransf_18 PF12847.2 gi|312136439|ref|YP_004003776.1| - 0.0081 16.7 0.0 0.082 13.4 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain TrkA_N PF02254.13 gi|312136439|ref|YP_004003776.1| - 0.0097 15.8 0.1 0.0097 15.8 0.1 2.6 3 1 0 3 3 3 1 TrkA-N domain Methyltransf_31 PF13847.1 gi|312136439|ref|YP_004003776.1| - 0.035 13.6 0.3 0.12 11.9 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain IlvN PF07991.7 gi|312136439|ref|YP_004003776.1| - 0.09 12.1 0.2 1.3 8.4 0.1 2.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Epimerase_2 PF02350.14 gi|312136440|ref|YP_004003777.1| - 3.2e-120 401.0 0.1 3.9e-120 400.7 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.15 gi|312136440|ref|YP_004003777.1| - 0.0013 18.1 1.2 0.0048 16.3 0.9 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyphos_transf PF04464.9 gi|312136440|ref|YP_004003777.1| - 0.019 13.7 2.3 0.19 10.4 1.6 2.1 1 1 0 1 1 1 0 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DUF460 PF04312.8 gi|312136441|ref|YP_004003778.1| - 5.6e-36 123.1 0.4 2.3e-35 121.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF3391 PF11871.3 gi|312136441|ref|YP_004003778.1| - 0.41 10.8 12.5 0.034 14.3 4.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Tweety PF04906.8 gi|312136441|ref|YP_004003778.1| - 1.2 7.4 3.1 1.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Tweety PseudoU_synth_1 PF01416.15 gi|312136442|ref|YP_004003779.1| - 1.9e-31 108.5 0.0 2.5e-17 63.1 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase YppF PF14178.1 gi|312136442|ref|YP_004003779.1| - 0.074 12.5 0.0 0.24 10.9 0.0 2.0 1 0 0 1 1 1 0 YppF-like protein EamA PF00892.15 gi|312136443|ref|YP_004003780.1| - 3.2e-41 140.2 39.4 2.5e-22 79.2 9.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|312136443|ref|YP_004003780.1| - 5.6e-05 22.8 9.7 5.6e-05 22.8 6.7 3.0 2 1 0 2 2 2 1 Triose-phosphate Transporter family EmrE PF13536.1 gi|312136443|ref|YP_004003780.1| - 0.00065 19.8 33.4 0.0008 19.5 2.7 3.6 2 2 2 4 4 4 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|312136443|ref|YP_004003780.1| - 0.025 14.3 1.4 0.025 14.3 1.0 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 FmdE PF02663.9 gi|312136444|ref|YP_004003781.1| - 6.6e-46 155.4 0.0 1.5e-22 79.8 0.0 3.3 3 0 0 3 3 3 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF1002 PF06207.6 gi|312136445|ref|YP_004003782.1| - 1.7e-56 191.0 17.2 2.2e-56 190.7 11.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) SpoVIF PF14069.1 gi|312136445|ref|YP_004003782.1| - 0.0038 16.9 8.7 0.0095 15.6 6.0 1.7 1 0 0 1 1 1 1 Stage VI sporulation protein F NPCC PF08058.6 gi|312136445|ref|YP_004003782.1| - 0.013 15.3 4.6 0.013 15.3 3.2 1.8 2 0 0 2 2 2 0 Nuclear pore complex component UPF0154 PF03672.8 gi|312136445|ref|YP_004003782.1| - 0.024 14.2 3.2 0.077 12.6 2.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0154) DUF4495 PF14906.1 gi|312136445|ref|YP_004003782.1| - 0.063 12.2 1.4 0.067 12.1 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4495) DNA_ligase_A_N PF04675.9 gi|312136445|ref|YP_004003782.1| - 0.084 12.6 2.0 1.1 9.0 0.1 2.3 1 1 1 2 2 2 0 DNA ligase N terminus DUF1947 PF09183.5 gi|312136445|ref|YP_004003782.1| - 0.095 12.4 2.0 2.4 8.0 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1947) ACP PF06857.6 gi|312136445|ref|YP_004003782.1| - 0.12 12.3 3.7 0.38 10.7 0.1 3.1 2 1 1 3 3 3 0 Malonate decarboxylase delta subunit (MdcD) DUF4404 PF14357.1 gi|312136445|ref|YP_004003782.1| - 0.32 11.4 5.5 2.4 8.6 0.6 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) SurA_N PF09312.6 gi|312136445|ref|YP_004003782.1| - 0.32 10.8 6.8 2.6 7.9 4.7 2.3 1 1 0 1 1 1 0 SurA N-terminal domain SNAPc19 PF15497.1 gi|312136445|ref|YP_004003782.1| - 2.3 8.4 9.4 0.81 9.9 3.5 2.5 2 1 0 2 2 2 0 snRNA-activating protein complex subunit 19, SNAPc subunit 19 Mer2 PF09074.5 gi|312136445|ref|YP_004003782.1| - 4.7 7.0 18.8 17 5.2 10.9 2.4 2 1 0 2 2 2 0 Mer2 ATP-synt_8 PF00895.15 gi|312136446|ref|YP_004003783.1| - 2.5 8.3 0.0 2.5 8.3 0.0 3.9 4 2 1 5 5 5 0 ATP synthase protein 8 DUF29 PF01724.11 gi|312136447|ref|YP_004003784.1| - 0.0087 15.9 0.6 0.011 15.6 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF29 Ribosomal_S8e PF01201.17 gi|312136448|ref|YP_004003785.1| - 1.8e-44 151.0 6.5 2e-44 150.9 4.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DNA_pol_B PF00136.16 gi|312136449|ref|YP_004003786.1| - 8.5e-37 127.0 1.7 1.1e-36 126.6 1.2 1.0 1 0 0 1 1 1 1 DNA polymerase family B Nanovirus_coat PF04660.7 gi|312136449|ref|YP_004003786.1| - 0.023 14.4 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Nanovirus coat protein DUF3116 PF11313.3 gi|312136449|ref|YP_004003786.1| - 0.12 12.0 4.6 3.5 7.3 0.1 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF3116) HAD_2 PF13419.1 gi|312136450|ref|YP_004003787.1| - 2.4e-29 102.7 0.0 4.5e-29 101.9 0.0 1.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|312136450|ref|YP_004003787.1| - 7.9e-14 52.5 0.1 8.2e-13 49.2 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|312136450|ref|YP_004003787.1| - 3.8e-13 48.9 0.0 6.5e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|312136450|ref|YP_004003787.1| - 5.8e-08 33.1 0.0 8e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|312136450|ref|YP_004003787.1| - 0.0012 18.6 0.0 0.71 9.8 0.0 3.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PNK3P PF08645.6 gi|312136450|ref|YP_004003787.1| - 0.0028 17.1 0.1 6.3 6.2 0.0 3.4 2 1 0 2 2 2 2 Polynucleotide kinase 3 phosphatase Acid_phosphat_B PF03767.9 gi|312136450|ref|YP_004003787.1| - 0.11 11.8 1.3 0.23 10.7 0.1 2.1 3 0 0 3 3 3 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Mg_chelatase PF01078.16 gi|312136451|ref|YP_004003788.1| - 1.3e-08 34.2 0.0 9.6e-07 28.1 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_45 PF14947.1 gi|312136451|ref|YP_004003788.1| - 0.00023 20.9 2.6 0.0084 15.9 0.0 3.5 4 0 0 4 4 4 1 Winged helix-turn-helix AAA_5 PF07728.9 gi|312136451|ref|YP_004003788.1| - 0.00063 19.4 0.8 0.012 15.3 0.0 3.0 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|312136451|ref|YP_004003788.1| - 0.00074 19.7 0.8 0.0075 16.4 0.1 2.6 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|312136451|ref|YP_004003788.1| - 0.00086 19.4 0.0 0.0044 17.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|312136451|ref|YP_004003788.1| - 0.0009 19.3 0.0 0.19 11.9 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_17 PF13207.1 gi|312136451|ref|YP_004003788.1| - 0.00094 20.0 0.1 0.005 17.6 0.0 2.3 3 0 0 3 3 2 1 AAA domain TIP49 PF06068.8 gi|312136451|ref|YP_004003788.1| - 0.0024 16.6 2.7 0.03 13.0 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|312136451|ref|YP_004003788.1| - 0.0027 17.4 0.0 0.0064 16.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|312136451|ref|YP_004003788.1| - 0.0036 17.3 0.0 0.0091 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain HxlR PF01638.12 gi|312136451|ref|YP_004003788.1| - 0.0051 16.4 0.1 0.035 13.7 0.1 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PIF1 PF05970.9 gi|312136451|ref|YP_004003788.1| - 0.017 14.1 0.0 0.039 12.9 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase PhoH PF02562.11 gi|312136451|ref|YP_004003788.1| - 0.017 14.3 0.0 0.039 13.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.1 gi|312136451|ref|YP_004003788.1| - 0.018 15.3 0.1 0.075 13.3 0.0 2.2 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|312136451|ref|YP_004003788.1| - 0.022 14.1 0.0 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|312136451|ref|YP_004003788.1| - 0.028 13.8 0.1 0.084 12.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|312136451|ref|YP_004003788.1| - 0.028 13.9 1.6 0.031 13.8 0.2 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|312136451|ref|YP_004003788.1| - 0.042 12.8 0.1 0.76 8.6 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MarR PF01047.17 gi|312136451|ref|YP_004003788.1| - 0.047 13.4 0.7 0.11 12.2 0.2 1.9 2 0 0 2 2 1 0 MarR family AAA_11 PF13086.1 gi|312136451|ref|YP_004003788.1| - 0.05 13.1 0.2 0.14 11.7 0.0 1.8 2 1 1 3 3 2 0 AAA domain DUF4162 PF13732.1 gi|312136451|ref|YP_004003788.1| - 0.086 13.3 0.7 0.086 13.3 0.5 2.2 3 0 0 3 3 2 0 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|312136451|ref|YP_004003788.1| - 0.091 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|312136451|ref|YP_004003788.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_pol_Rpc34 PF05158.7 gi|312136451|ref|YP_004003788.1| - 0.23 10.5 2.1 2.5 7.2 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit Macro PF01661.16 gi|312136452|ref|YP_004003789.1| - 9.3e-30 102.9 0.2 1.3e-29 102.5 0.1 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.1 gi|312136452|ref|YP_004003789.1| - 4.6e-09 35.7 0.1 7.7e-08 31.7 0.1 2.2 1 1 0 1 1 1 1 Macro-like domain GHMP_kinases_C PF08544.8 gi|312136452|ref|YP_004003789.1| - 0.069 13.3 0.1 0.31 11.2 0.0 2.0 2 0 0 2 2 2 0 GHMP kinases C terminal NosD PF05048.8 gi|312136453|ref|YP_004003790.1| - 4.4e-30 104.5 74.1 1.2e-15 57.3 14.4 3.1 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|312136453|ref|YP_004003790.1| - 2.3e-17 63.1 82.1 1.1e-10 41.4 25.1 4.2 2 1 2 4 4 4 2 Right handed beta helix region DUF4624 PF15417.1 gi|312136453|ref|YP_004003790.1| - 0.007 15.9 0.4 0.036 13.6 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4624) DUF1034 PF06280.7 gi|312136453|ref|YP_004003790.1| - 0.011 16.1 5.3 3.1 8.2 0.9 3.4 2 1 0 2 2 2 0 Fn3-like domain (DUF1034) Transglut_C PF00927.17 gi|312136453|ref|YP_004003790.1| - 0.033 14.2 0.3 0.097 12.7 0.2 1.8 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain Glycos_transf_1 PF00534.15 gi|312136454|ref|YP_004003791.1| - 3.6e-46 156.7 2.3 7.9e-46 155.6 1.6 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312136454|ref|YP_004003791.1| - 4.5e-26 91.6 0.0 6.7e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|312136454|ref|YP_004003791.1| - 4.5e-17 62.6 0.0 5.9e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|312136454|ref|YP_004003791.1| - 9.5e-17 61.4 0.0 2.2e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|312136454|ref|YP_004003791.1| - 1.6e-14 53.9 1.0 4.1e-14 52.6 0.7 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|312136454|ref|YP_004003791.1| - 2.1e-14 53.5 0.0 6.1e-14 52.0 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2157 PF09925.4 gi|312136455|ref|YP_004003792.1| - 0.086 12.4 3.1 0.088 12.4 2.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF1434 PF07254.7 gi|312136455|ref|YP_004003792.1| - 0.11 12.3 0.7 0.13 12.0 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1434) DUF4077 PF13295.1 gi|312136455|ref|YP_004003792.1| - 0.13 11.9 3.6 0.13 11.9 2.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4077) DUF2681 PF10883.3 gi|312136455|ref|YP_004003792.1| - 0.18 12.0 3.0 0.62 10.2 2.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2681) Wzy_C PF04932.10 gi|312136455|ref|YP_004003792.1| - 0.31 10.8 8.6 0.34 10.6 6.0 1.0 1 0 0 1 1 1 0 O-Antigen ligase BatA PF07584.6 gi|312136455|ref|YP_004003792.1| - 0.35 11.1 4.8 0.15 12.2 1.6 1.6 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal DUF4173 PF13777.1 gi|312136455|ref|YP_004003792.1| - 0.38 10.0 4.1 0.37 10.0 2.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) DUF4131 PF13567.1 gi|312136455|ref|YP_004003792.1| - 0.64 9.4 4.4 0.71 9.2 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TrbC PF04956.8 gi|312136455|ref|YP_004003792.1| - 1.1 9.3 8.8 2.3 8.2 6.2 1.5 1 1 1 2 2 2 0 TrbC/VIRB2 family Peptidase_U4 PF03419.8 gi|312136455|ref|YP_004003792.1| - 1.5 7.8 5.7 1.5 7.8 3.9 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF3290 PF11694.3 gi|312136455|ref|YP_004003792.1| - 2.3 7.9 8.4 2.3 7.9 5.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) O-antigen_lig PF13425.1 gi|312136455|ref|YP_004003792.1| - 4.2 7.3 9.0 5 7.1 6.3 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF948 PF06103.6 gi|312136455|ref|YP_004003792.1| - 4.3 7.2 11.2 1.2 9.0 2.1 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3671 PF12420.3 gi|312136455|ref|YP_004003792.1| - 7.2 6.6 8.1 7.7 6.5 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function CCG PF02754.11 gi|312136456|ref|YP_004003793.1| - 1.2e-43 146.9 0.7 1.1e-23 83.0 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer2_3 PF13085.1 gi|312136456|ref|YP_004003793.1| - 8.4e-30 102.8 3.2 9.3e-30 102.6 0.1 2.5 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|312136456|ref|YP_004003793.1| - 1.3e-12 47.5 4.4 1.3e-12 47.5 3.0 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136456|ref|YP_004003793.1| - 7.6e-10 38.4 5.8 7.6e-10 38.4 4.0 2.9 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136456|ref|YP_004003793.1| - 4.6e-09 36.4 12.7 8.5e-09 35.6 3.7 3.9 5 1 1 6 6 5 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|312136456|ref|YP_004003793.1| - 1.6e-06 27.7 0.1 1.6e-06 27.7 0.1 2.5 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.2 gi|312136456|ref|YP_004003793.1| - 2.5e-06 27.7 7.7 2.5e-06 27.7 5.3 3.8 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136456|ref|YP_004003793.1| - 3.8e-06 27.0 9.4 3.8e-06 27.0 6.5 4.0 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136456|ref|YP_004003793.1| - 0.00018 21.8 3.5 0.00018 21.8 2.4 4.1 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136456|ref|YP_004003793.1| - 0.0034 17.2 1.7 0.0034 17.2 1.2 4.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer2_4 PF13510.1 gi|312136456|ref|YP_004003793.1| - 0.0088 15.8 2.2 0.0096 15.7 0.1 2.1 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.22 gi|312136456|ref|YP_004003793.1| - 0.011 15.2 5.7 0.011 15.2 3.9 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312136456|ref|YP_004003793.1| - 0.013 15.3 2.6 0.013 15.3 1.8 4.5 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|312136456|ref|YP_004003793.1| - 0.019 15.5 5.5 0.019 15.5 3.8 4.6 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312136456|ref|YP_004003793.1| - 0.019 15.4 8.0 0.12 13.0 0.1 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|312136456|ref|YP_004003793.1| - 0.025 15.2 0.3 0.025 15.2 0.2 3.9 3 1 2 5 5 5 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|312136456|ref|YP_004003793.1| - 0.037 14.3 1.3 0.037 14.3 0.9 4.6 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|312136456|ref|YP_004003793.1| - 1.5 9.3 12.4 4.4 7.7 1.2 3.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|312136456|ref|YP_004003793.1| - 1.9 8.3 17.4 0.51 10.2 0.1 3.7 5 0 0 5 5 5 0 4Fe-4S dicluster domain SpoU_methylase PF00588.14 gi|312136457|ref|YP_004003794.1| - 1.1e-31 109.5 0.2 1.5e-31 109.1 0.1 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|312136457|ref|YP_004003794.1| - 0.00014 21.4 0.0 0.0024 17.4 0.0 2.3 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DUF313 PF03754.8 gi|312136457|ref|YP_004003794.1| - 0.11 12.4 0.6 0.65 9.9 0.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF313) DUF1512 PF07431.7 gi|312136458|ref|YP_004003795.1| - 1.6e-108 362.6 14.2 1.9e-108 362.3 9.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Ribosomal_L22 PF00237.14 gi|312136458|ref|YP_004003795.1| - 1.1 9.2 6.2 2.6 8.0 0.4 2.8 2 1 0 2 2 2 0 Ribosomal protein L22p/L17e P4Ha_N PF08336.6 gi|312136458|ref|YP_004003795.1| - 1.7 8.4 8.1 0.13 12.1 1.7 2.0 2 1 1 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region OSCP PF00213.13 gi|312136458|ref|YP_004003795.1| - 2.1 8.2 8.3 0.35 10.6 2.0 2.3 2 1 1 3 3 3 0 ATP synthase delta (OSCP) subunit DUF3456 PF11938.3 gi|312136458|ref|YP_004003795.1| - 3.3 7.6 8.2 0.77 9.7 0.1 2.8 2 1 1 3 3 3 0 TLR4 regulator and MIR-interacting MSAP DCD PF06559.6 gi|312136459|ref|YP_004003796.1| - 8.4e-20 70.4 0.0 4.3e-11 41.8 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|312136459|ref|YP_004003796.1| - 6.1e-18 64.5 0.0 8.2e-18 64.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase tRNA-synt_2b PF00587.20 gi|312136460|ref|YP_004003797.1| - 3.1e-66 222.2 0.3 3.1e-66 222.2 0.2 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|312136460|ref|YP_004003797.1| - 3.4e-22 78.2 4.3 9.5e-22 76.7 0.2 2.7 2 1 0 2 2 2 1 Anticodon binding domain DUF4435 PF14491.1 gi|312136460|ref|YP_004003797.1| - 0.017 14.9 10.2 0.33 10.7 2.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF4435) Zn-ribbon_8 PF09723.5 gi|312136460|ref|YP_004003797.1| - 0.019 14.9 0.3 0.56 10.1 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|312136460|ref|YP_004003797.1| - 0.26 10.8 3.6 1.5 8.4 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|312136460|ref|YP_004003797.1| - 1.1 9.0 4.8 2.3 7.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DUF366 PF04017.7 gi|312136461|ref|YP_004003798.1| - 1.2e-69 233.2 1.1 1.4e-69 233.0 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) MADF_DNA_bdg PF10545.4 gi|312136461|ref|YP_004003798.1| - 0.14 12.3 0.2 0.35 11.0 0.1 1.7 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like PTPS PF01242.14 gi|312136462|ref|YP_004003799.1| - 2.1e-30 104.9 0.1 2.4e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF4318 PF14201.1 gi|312136462|ref|YP_004003799.1| - 0.08 12.7 0.7 0.18 11.6 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4318) Fer4_14 PF13394.1 gi|312136463|ref|YP_004003800.1| - 2.5e-18 66.2 0.0 4.2e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|312136463|ref|YP_004003800.1| - 3.6e-18 66.3 0.1 5.5e-18 65.6 0.1 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136463|ref|YP_004003800.1| - 2.3e-15 56.9 0.1 3.7e-15 56.2 0.1 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain CBS PF00571.23 gi|312136464|ref|YP_004003801.1| - 3.8e-33 113.0 3.0 3.1e-17 62.0 0.3 2.2 2 0 0 2 2 2 2 CBS domain DUF4428 PF14471.1 gi|312136464|ref|YP_004003801.1| - 1.3 8.8 5.3 0.47 10.2 1.7 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) TF_Zn_Ribbon PF08271.7 gi|312136464|ref|YP_004003801.1| - 2 7.7 5.8 1.9 7.8 2.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding CBS PF00571.23 gi|312136465|ref|YP_004003802.1| - 5.1e-52 173.4 11.3 1.2e-14 53.8 0.1 4.7 4 1 0 4 4 4 4 CBS domain H_kinase_N PF12282.3 gi|312136465|ref|YP_004003802.1| - 0.016 14.7 0.6 4.1 7.0 0.1 2.8 3 0 0 3 3 3 0 Signal transduction histidine kinase CBS PF00571.23 gi|312136466|ref|YP_004003803.1| - 1.3e-67 223.3 11.3 8.4e-17 60.6 0.3 4.1 4 0 0 4 4 4 4 CBS domain Peripla_BP_4 PF13407.1 gi|312136466|ref|YP_004003803.1| - 0.0056 16.0 0.0 0.0079 15.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain CBS PF00571.23 gi|312136467|ref|YP_004003804.1| - 3.1e-73 241.3 16.7 6.3e-19 67.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|312136467|ref|YP_004003804.1| - 0.0011 18.8 6.1 4.5 7.1 0.2 4.3 4 0 0 4 4 4 2 PRC-barrel domain Cache_3 PF14827.1 gi|312136467|ref|YP_004003804.1| - 0.059 13.2 0.7 10 6.0 0.0 3.5 4 0 0 4 4 4 0 Sensory domain of two-component sensor kinase Ribosomal_L9_C PF03948.9 gi|312136467|ref|YP_004003804.1| - 0.073 13.1 0.3 13 5.9 0.0 3.4 2 1 1 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF3659 PF12396.3 gi|312136467|ref|YP_004003804.1| - 0.6 9.8 3.0 22 4.7 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) DUF2786 PF10979.3 gi|312136467|ref|YP_004003804.1| - 1 9.1 2.8 12 5.6 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2786) CAT_RBD PF03123.10 gi|312136467|ref|YP_004003804.1| - 7.2 6.3 7.1 3.7 7.3 0.2 3.3 3 1 0 3 3 3 0 CAT RNA binding domain CBS PF00571.23 gi|312136468|ref|YP_004003805.1| - 1.8e-63 210.0 11.6 8.4e-19 67.1 0.1 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|312136468|ref|YP_004003805.1| - 5e-05 23.3 2.6 0.66 10.0 0.1 3.9 4 0 0 4 4 4 2 Ribosomal protein L9, C-terminal domain PduV-EutP PF10662.4 gi|312136468|ref|YP_004003805.1| - 0.04 13.3 4.0 10 5.5 0.0 3.8 2 2 1 4 4 4 0 Ethanolamine utilisation - propanediol utilisation DNA_ligase_A_M PF01068.16 gi|312136469|ref|YP_004003806.1| - 8.3e-23 80.8 0.7 1.6e-22 79.8 0.0 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|312136469|ref|YP_004003806.1| - 2.6e-06 27.3 0.2 1.5e-05 24.8 0.1 2.0 1 1 0 1 1 1 1 RNA ligase DUF1610 PF07754.6 gi|312136469|ref|YP_004003806.1| - 0.041 13.9 3.3 0.041 13.9 2.3 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) IlvC PF01450.14 gi|312136469|ref|YP_004003806.1| - 0.045 13.6 0.2 0.15 12.0 0.2 1.8 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain A2L_zn_ribbon PF08792.5 gi|312136469|ref|YP_004003806.1| - 0.074 12.5 0.0 0.53 9.8 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain MMR_HSR1_C PF08438.5 gi|312136469|ref|YP_004003806.1| - 0.11 12.7 0.7 0.22 11.7 0.1 1.8 2 0 0 2 2 2 0 GTPase of unknown function C-terminal C1_3 PF07649.7 gi|312136469|ref|YP_004003806.1| - 0.32 11.0 2.1 4.5 7.4 0.5 2.5 2 0 0 2 2 2 0 C1-like domain PDT PF00800.13 gi|312136470|ref|YP_004003807.1| - 6.2e-61 205.1 0.0 8.6e-61 204.6 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|312136470|ref|YP_004003807.1| - 2.1e-09 36.6 0.0 4.9e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 ACT domain DUF364 PF04016.7 gi|312136471|ref|YP_004003808.1| - 3.2e-40 136.8 0.0 4.6e-40 136.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|312136471|ref|YP_004003808.1| - 2e-19 69.4 0.0 3.3e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) DUF364 PF04016.7 gi|312136472|ref|YP_004003809.1| - 2.9e-14 52.6 0.0 4.3e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) PS_pyruv_trans PF04230.8 gi|312136472|ref|YP_004003809.1| - 0.034 13.8 0.7 0.053 13.2 0.4 1.4 1 1 0 1 1 1 0 Polysaccharide pyruvyl transferase DUF2325 PF10087.4 gi|312136472|ref|YP_004003809.1| - 0.044 13.6 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) PHO4 PF01384.15 gi|312136473|ref|YP_004003810.1| - 2.2e-72 243.4 34.1 3e-72 243.0 23.7 1.2 1 0 0 1 1 1 1 Phosphate transporter family CBS PF00571.23 gi|312136474|ref|YP_004003811.1| - 5.1e-33 112.5 3.4 5.6e-16 58.0 0.1 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_M23 PF01551.17 gi|312136474|ref|YP_004003811.1| - 0.074 13.1 0.0 0.2 11.7 0.0 1.7 1 1 1 2 2 2 0 Peptidase family M23 ATP-cone PF03477.11 gi|312136475|ref|YP_004003812.1| - 2.2e-11 44.0 2.6 4.2e-10 39.9 0.4 3.1 3 0 0 3 3 3 1 ATP cone domain AAA_17 PF13207.1 gi|312136475|ref|YP_004003812.1| - 3.7e-07 31.0 0.9 2e-06 28.6 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|312136475|ref|YP_004003812.1| - 5.7e-06 26.6 0.2 3.9e-05 23.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|312136475|ref|YP_004003812.1| - 0.00088 18.4 0.0 0.0019 17.3 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin Cytidylate_kin2 PF13189.1 gi|312136475|ref|YP_004003812.1| - 0.016 15.1 0.1 0.016 15.1 0.0 1.9 2 1 0 2 2 2 0 Cytidylate kinase-like family AAA PF00004.24 gi|312136475|ref|YP_004003812.1| - 0.038 14.1 1.3 2.4 8.3 0.0 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|312136475|ref|YP_004003812.1| - 0.039 13.5 0.2 0.078 12.5 0.0 1.7 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|312136475|ref|YP_004003812.1| - 0.12 12.4 0.1 11 6.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain HTH_12 PF08461.5 gi|312136475|ref|YP_004003812.1| - 0.16 11.7 1.6 12 5.7 0.2 3.0 2 1 1 3 3 3 0 Ribonuclease R winged-helix domain Metallophos_2 PF12850.2 gi|312136476|ref|YP_004003813.1| - 1.3e-18 67.2 0.0 1.7e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312136476|ref|YP_004003813.1| - 4.3e-18 65.4 0.0 5.5e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|312136476|ref|YP_004003813.1| - 7.7e-17 61.2 0.6 6.3e-15 55.0 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF2119 PF09892.4 gi|312136476|ref|YP_004003813.1| - 0.041 13.1 0.0 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) DUF2096 PF09869.4 gi|312136477|ref|YP_004003814.1| - 4.1e-41 140.6 1.6 4.6e-41 140.5 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) KH_1 PF00013.24 gi|312136477|ref|YP_004003814.1| - 0.061 12.9 0.3 0.12 12.0 0.2 1.4 1 0 0 1 1 1 0 KH domain DUF749 PF05370.6 gi|312136478|ref|YP_004003815.1| - 1.5e-30 104.9 1.8 1.6e-30 104.8 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) DUF4265 PF14085.1 gi|312136478|ref|YP_004003815.1| - 0.027 14.2 0.0 0.034 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) PSRP-3_Ycf65 PF04839.8 gi|312136478|ref|YP_004003815.1| - 0.033 14.2 1.4 0.036 14.0 0.2 1.6 2 0 0 2 2 2 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) 3H PF02829.9 gi|312136478|ref|YP_004003815.1| - 0.06 13.3 0.1 0.072 13.1 0.1 1.2 1 0 0 1 1 1 0 3H domain PBP PF01161.15 gi|312136479|ref|YP_004003816.1| - 1.3e-44 151.6 0.0 1.4e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Tubulin PF00091.20 gi|312136480|ref|YP_004003817.1| - 9.7e-39 133.4 0.3 5.5e-38 130.9 0.2 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|312136480|ref|YP_004003817.1| - 1.9e-34 117.6 2.5 4e-34 116.5 1.0 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|312136480|ref|YP_004003817.1| - 0.061 13.1 0.1 0.19 11.5 0.1 1.8 1 0 0 1 1 1 0 ThiF family Tubulin_2 PF13809.1 gi|312136480|ref|YP_004003817.1| - 0.26 10.2 2.7 0.62 8.9 1.9 1.7 1 1 0 1 1 1 0 Tubulin like PK_C PF02887.11 gi|312136481|ref|YP_004003818.1| - 3.4e-21 74.9 0.7 4.3e-21 74.6 0.5 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain MCH PF02289.11 gi|312136482|ref|YP_004003819.1| - 3.1e-154 512.6 0.4 3.5e-154 512.4 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thymidylat_synt PF00303.14 gi|312136483|ref|YP_004003820.1| - 2.2e-35 122.0 0.1 4.2e-35 121.0 0.1 1.4 1 1 0 1 1 1 1 Thymidylate synthase FemAB PF02388.11 gi|312136483|ref|YP_004003820.1| - 0.01 14.5 0.1 0.014 14.1 0.1 1.1 1 0 0 1 1 1 0 FemAB family DUF3201 PF11447.3 gi|312136483|ref|YP_004003820.1| - 0.014 14.8 0.1 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) Meth_synt_2 PF01717.13 gi|312136484|ref|YP_004003821.1| - 2.8e-81 273.0 0.1 3.2e-81 272.8 0.1 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|312136484|ref|YP_004003821.1| - 3.4e-15 56.1 0.3 5.6e-15 55.3 0.2 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|312136484|ref|YP_004003821.1| - 9.4e-06 24.7 0.9 0.002 17.1 0.2 2.2 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) DUF1894 PF08979.6 gi|312136485|ref|YP_004003822.1| - 1.7e-31 108.0 0.7 2e-31 107.9 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.6 gi|312136486|ref|YP_004003823.1| - 1.9e-42 144.5 0.1 2.2e-42 144.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) NikR_C PF08753.6 gi|312136486|ref|YP_004003823.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 NikR C terminal nickel binding domain PcfJ PF14284.1 gi|312136486|ref|YP_004003823.1| - 0.063 12.7 0.1 0.088 12.2 0.1 1.2 1 0 0 1 1 1 0 PcfJ-like protein POR PF01558.13 gi|312136488|ref|YP_004003825.1| - 3.5e-41 140.9 0.6 4.3e-41 140.6 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|312136489|ref|YP_004003826.1| - 1.6e-14 52.7 19.0 2.2e-09 36.5 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136489|ref|YP_004003826.1| - 6.5e-10 38.6 28.6 3.5e-07 29.9 12.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136489|ref|YP_004003826.1| - 3.2e-09 36.2 16.9 9.7e-06 25.2 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312136489|ref|YP_004003826.1| - 5.9e-09 36.0 26.6 6.8e-06 26.2 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136489|ref|YP_004003826.1| - 1.8e-08 33.8 14.0 0.00016 21.3 1.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136489|ref|YP_004003826.1| - 7e-08 32.2 16.2 1.5e-07 31.1 11.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136489|ref|YP_004003826.1| - 3.1e-07 30.6 15.3 7.7e-07 29.4 10.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136489|ref|YP_004003826.1| - 4.1e-07 30.6 15.6 0.0011 19.6 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|312136489|ref|YP_004003826.1| - 0.00056 20.0 15.7 0.059 13.7 3.1 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312136489|ref|YP_004003826.1| - 0.001 19.0 13.8 0.099 12.6 10.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136489|ref|YP_004003826.1| - 0.001 19.4 20.3 0.012 16.1 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312136489|ref|YP_004003826.1| - 0.0042 17.4 15.9 0.074 13.4 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136489|ref|YP_004003826.1| - 0.0075 16.5 15.5 0.095 13.0 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312136489|ref|YP_004003826.1| - 0.027 14.8 15.4 0.1 13.0 1.9 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|312136489|ref|YP_004003826.1| - 0.47 11.0 16.4 0.55 10.8 2.8 2.8 2 2 0 2 2 2 0 4Fe-4S single cluster domain POR_N PF01855.14 gi|312136490|ref|YP_004003827.1| - 1.9e-74 250.0 0.1 2.4e-74 249.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|312136490|ref|YP_004003827.1| - 4.7e-05 23.3 0.4 0.00031 20.6 0.0 2.3 2 0 0 2 2 2 1 Transketolase, C-terminal domain Ribul_P_3_epim PF00834.14 gi|312136490|ref|YP_004003827.1| - 0.056 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TPP_enzyme_C PF02775.16 gi|312136491|ref|YP_004003828.1| - 4.4e-29 101.0 2.7 1e-28 99.8 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|312136491|ref|YP_004003828.1| - 0.098 11.5 1.2 0.18 10.7 0.8 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4 PF00037.22 gi|312136492|ref|YP_004003829.1| - 6.6e-16 57.1 38.6 2.7e-10 39.3 1.8 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312136492|ref|YP_004003829.1| - 8e-16 57.1 35.2 1.7e-06 27.6 1.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136492|ref|YP_004003829.1| - 2.1e-13 50.4 31.7 4.3e-06 26.9 7.9 3.7 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136492|ref|YP_004003829.1| - 6.1e-13 48.3 29.4 1.9e-07 30.7 7.3 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136492|ref|YP_004003829.1| - 6.7e-13 47.7 29.8 5.7e-06 25.9 1.6 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|312136492|ref|YP_004003829.1| - 1.7e-11 43.8 14.6 1.7e-11 43.8 10.1 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136492|ref|YP_004003829.1| - 4.4e-10 39.6 31.2 9.1e-06 25.8 7.2 3.2 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136492|ref|YP_004003829.1| - 4.5e-10 39.3 44.6 0.002 18.5 2.4 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|312136492|ref|YP_004003829.1| - 2.1e-08 34.7 28.4 0.019 15.6 3.6 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|312136492|ref|YP_004003829.1| - 3.7e-07 29.9 34.6 0.00071 19.7 1.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136492|ref|YP_004003829.1| - 5.6e-05 22.9 30.5 0.0085 15.9 7.2 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136492|ref|YP_004003829.1| - 0.0006 19.7 31.2 0.085 12.9 8.2 3.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136492|ref|YP_004003829.1| - 0.0065 16.7 33.5 0.034 14.4 1.3 4.4 1 1 4 5 5 5 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312136492|ref|YP_004003829.1| - 0.024 15.0 1.9 0.024 15.0 1.3 4.4 4 1 1 5 5 5 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|312136492|ref|YP_004003829.1| - 0.11 13.0 29.7 0.38 11.3 8.0 4.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|312136492|ref|YP_004003829.1| - 0.9 9.1 28.4 0.11 12.0 0.6 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_19 PF06902.6 gi|312136492|ref|YP_004003829.1| - 4.4 7.2 18.8 27 4.6 4.8 4.7 2 1 2 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|312136493|ref|YP_004003830.1| - 9.3e-19 66.1 41.6 2.3e-11 42.8 4.2 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136493|ref|YP_004003830.1| - 8.4e-18 64.5 64.4 1e-08 35.4 8.5 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136493|ref|YP_004003830.1| - 9e-17 60.1 40.2 1.3e-09 37.4 3.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136493|ref|YP_004003830.1| - 1.6e-16 59.8 51.7 8.9e-09 35.0 7.0 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136493|ref|YP_004003830.1| - 1.9e-15 56.8 40.3 4.8e-08 33.1 9.1 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312136493|ref|YP_004003830.1| - 5.4e-13 48.6 11.5 5.4e-13 48.6 8.0 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136493|ref|YP_004003830.1| - 9.8e-12 44.5 45.6 0.00023 21.4 5.4 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|312136493|ref|YP_004003830.1| - 4.8e-11 42.0 36.9 4.3e-05 23.4 2.8 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|312136493|ref|YP_004003830.1| - 1.1e-10 40.7 36.0 5.9e-08 32.1 3.2 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|312136493|ref|YP_004003830.1| - 6.6e-09 36.3 27.7 0.0012 19.5 2.6 4.5 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|312136493|ref|YP_004003830.1| - 6.3e-06 25.9 37.3 0.00013 21.7 8.2 3.7 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136493|ref|YP_004003830.1| - 6e-05 23.0 29.3 0.0096 15.9 8.3 3.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136493|ref|YP_004003830.1| - 0.00015 22.0 26.7 0.0053 17.0 0.8 4.2 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136493|ref|YP_004003830.1| - 0.00021 21.7 10.3 0.00021 21.7 7.2 4.0 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312136493|ref|YP_004003830.1| - 0.00033 20.9 2.1 0.00033 20.9 1.4 4.3 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|312136493|ref|YP_004003830.1| - 0.0012 19.2 30.1 0.0052 17.1 3.9 4.1 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fumerase PF05681.9 gi|312136494|ref|YP_004003831.1| - 2.6e-101 338.2 0.3 2.9e-101 338.0 0.2 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) PhoU PF01895.14 gi|312136495|ref|YP_004003832.1| - 2.2e-29 101.7 11.4 1.3e-15 57.6 3.3 2.1 2 0 0 2 2 2 2 PhoU domain YccJ PF13993.1 gi|312136495|ref|YP_004003832.1| - 0.034 14.2 2.9 8.6 6.5 0.0 3.6 2 1 1 3 3 3 0 YccJ-like protein Prominin PF05478.6 gi|312136495|ref|YP_004003832.1| - 0.065 10.7 1.3 0.089 10.3 0.9 1.1 1 0 0 1 1 1 0 Prominin PRESAN PF09687.5 gi|312136495|ref|YP_004003832.1| - 0.32 11.0 7.7 0.23 11.5 1.0 2.2 2 0 0 2 2 2 0 Plasmodium RESA N-terminal Fib_alpha PF08702.5 gi|312136495|ref|YP_004003832.1| - 1.1 9.3 6.2 3.4 7.7 1.3 2.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.4 gi|312136495|ref|YP_004003832.1| - 1.4 9.0 7.1 0.89 9.7 0.7 3.0 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BAR PF03114.13 gi|312136495|ref|YP_004003832.1| - 2.5 7.5 8.2 2.4 7.6 0.8 2.2 1 1 0 1 1 1 0 BAR domain ABC_tran PF00005.22 gi|312136496|ref|YP_004003833.1| - 6e-33 114.0 0.0 8.4e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136496|ref|YP_004003833.1| - 2.3e-15 57.3 0.1 2.2e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|312136496|ref|YP_004003833.1| - 1.7e-09 37.2 0.0 2.7e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|312136496|ref|YP_004003833.1| - 4e-05 23.7 0.0 9.1e-05 22.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|312136496|ref|YP_004003833.1| - 8.9e-05 21.7 0.0 0.00018 20.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|312136496|ref|YP_004003833.1| - 0.00036 19.6 2.5 0.21 10.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|312136496|ref|YP_004003833.1| - 0.00047 20.9 0.1 0.001 19.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|312136496|ref|YP_004003833.1| - 0.0005 19.5 0.0 0.00098 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Adeno_IVa2 PF02456.10 gi|312136496|ref|YP_004003833.1| - 0.0009 17.9 0.0 0.0039 15.9 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein Arch_ATPase PF01637.13 gi|312136496|ref|YP_004003833.1| - 0.00093 18.9 0.4 0.014 15.0 0.3 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_13 PF13166.1 gi|312136496|ref|YP_004003833.1| - 0.0014 17.1 0.1 0.1 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|312136496|ref|YP_004003833.1| - 0.0033 17.7 0.9 0.0093 16.3 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|312136496|ref|YP_004003833.1| - 0.0043 16.9 0.0 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain Spore_IV_A PF09547.5 gi|312136496|ref|YP_004003833.1| - 0.0043 15.8 1.0 0.0062 15.2 0.0 1.7 3 0 0 3 3 3 1 Stage IV sporulation protein A (spore_IV_A) AAA_14 PF13173.1 gi|312136496|ref|YP_004003833.1| - 0.0052 16.6 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|312136496|ref|YP_004003833.1| - 0.0059 16.9 0.0 0.017 15.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|312136496|ref|YP_004003833.1| - 0.0064 16.5 0.3 0.031 14.2 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|312136496|ref|YP_004003833.1| - 0.0091 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family Rad17 PF03215.10 gi|312136496|ref|YP_004003833.1| - 0.013 14.2 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|312136496|ref|YP_004003833.1| - 0.013 15.6 0.0 0.038 14.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_10 PF12846.2 gi|312136496|ref|YP_004003833.1| - 0.016 14.6 0.1 0.032 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|312136496|ref|YP_004003833.1| - 0.022 14.4 1.8 0.12 12.0 0.0 2.6 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|312136496|ref|YP_004003833.1| - 0.039 13.4 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|312136496|ref|YP_004003833.1| - 0.049 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|312136496|ref|YP_004003833.1| - 0.053 13.4 0.0 0.15 11.9 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|312136496|ref|YP_004003833.1| - 0.054 13.9 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|312136496|ref|YP_004003833.1| - 0.066 12.6 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain IIGP PF05049.8 gi|312136496|ref|YP_004003833.1| - 0.071 11.9 0.1 0.17 10.6 0.0 1.6 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) Septin PF00735.13 gi|312136496|ref|YP_004003833.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Septin RNA12 PF10443.4 gi|312136496|ref|YP_004003833.1| - 0.11 10.9 0.0 0.2 10.0 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein Viral_helicase1 PF01443.13 gi|312136496|ref|YP_004003833.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.1 gi|312136496|ref|YP_004003833.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|312136496|ref|YP_004003833.1| - 0.13 12.1 0.1 2.1 8.3 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.17 gi|312136497|ref|YP_004003834.1| - 1.1e-28 100.0 15.3 1.1e-28 100.0 10.6 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|312136498|ref|YP_004003835.1| - 3.5e-27 95.1 19.8 3.5e-27 95.1 13.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2613 PF11021.3 gi|312136498|ref|YP_004003835.1| - 0.85 9.3 3.0 0.64 9.7 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) PBP_like_2 PF12849.2 gi|312136499|ref|YP_004003836.1| - 3e-51 174.5 1.4 1.7e-50 172.0 1.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|312136499|ref|YP_004003836.1| - 3.9e-24 84.6 0.0 6.9e-24 83.8 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|312136499|ref|YP_004003836.1| - 5.5e-16 58.8 0.0 1.5e-15 57.4 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|312136499|ref|YP_004003836.1| - 2.2e-11 44.0 0.6 5.9e-11 42.6 0.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|312136499|ref|YP_004003836.1| - 1.4e-06 28.3 0.0 0.00094 18.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|312136499|ref|YP_004003836.1| - 9.6e-05 21.5 0.0 0.00062 18.9 0.0 1.9 1 1 0 1 1 1 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|312136499|ref|YP_004003836.1| - 0.00027 20.3 0.0 0.00055 19.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4097 PF13349.1 gi|312136499|ref|YP_004003836.1| - 0.0068 15.9 2.7 0.01 15.4 1.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) DUF4116 PF13475.1 gi|312136499|ref|YP_004003836.1| - 0.063 12.7 0.0 0.17 11.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) Radical_SAM PF04055.16 gi|312136500|ref|YP_004003837.1| - 0.00026 21.2 0.2 0.00079 19.6 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF1340 PF07067.6 gi|312136500|ref|YP_004003837.1| - 0.0095 15.1 0.5 0.016 14.3 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1340) EMG1 PF03587.9 gi|312136501|ref|YP_004003838.1| - 1.1e-56 191.4 0.3 1.2e-56 191.2 0.2 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase MTD PF01993.13 gi|312136501|ref|YP_004003838.1| - 0.013 14.5 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Bac_luciferase PF00296.15 gi|312136502|ref|YP_004003839.1| - 3.6e-65 220.1 0.0 4e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|312136502|ref|YP_004003839.1| - 0.023 14.4 0.1 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 PHP domain STT3 PF02516.9 gi|312136503|ref|YP_004003840.1| - 2.6e-66 224.5 46.4 4.7e-66 223.7 32.1 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF4519 PF15012.1 gi|312136503|ref|YP_004003840.1| - 1.3 9.0 0.0 1.3 9.0 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4519) Gp_dh_C PF02800.15 gi|312136504|ref|YP_004003841.1| - 5.7e-32 110.3 0.1 8.3e-32 109.8 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|312136504|ref|YP_004003841.1| - 1.9e-23 83.0 0.8 5.7e-23 81.5 0.1 2.1 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|312136504|ref|YP_004003841.1| - 4.8e-11 42.6 0.4 1.4e-10 41.1 0.2 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|312136504|ref|YP_004003841.1| - 5.9e-05 23.3 0.1 0.0002 21.6 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|312136504|ref|YP_004003841.1| - 0.00012 22.0 1.1 0.0013 18.7 0.1 3.0 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_3 PF03447.11 gi|312136504|ref|YP_004003841.1| - 0.00014 22.2 1.0 0.0011 19.2 0.0 2.7 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|312136504|ref|YP_004003841.1| - 0.00027 20.1 0.2 0.01 14.9 0.2 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|312136504|ref|YP_004003841.1| - 0.0046 15.9 0.1 0.017 14.1 0.1 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase DUF348 PF03990.9 gi|312136504|ref|YP_004003841.1| - 0.024 14.1 0.4 0.16 11.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF348) AdoHcyase_NAD PF00670.16 gi|312136504|ref|YP_004003841.1| - 0.043 13.6 0.1 2.7 7.8 0.0 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|312136504|ref|YP_004003841.1| - 0.055 13.9 0.1 0.51 10.7 0.1 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|312136504|ref|YP_004003841.1| - 0.067 12.8 0.3 0.16 11.6 0.2 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|312136504|ref|YP_004003841.1| - 0.067 13.0 0.4 0.67 9.7 0.0 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase SIS PF01380.17 gi|312136504|ref|YP_004003841.1| - 0.069 12.7 0.1 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 SIS domain AP_endonuc_2 PF01261.19 gi|312136505|ref|YP_004003842.1| - 9.4e-18 64.2 0.0 1.2e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|312136505|ref|YP_004003842.1| - 0.00078 18.5 0.0 0.0032 16.5 0.0 1.9 1 1 0 1 1 1 1 UV-endonuclease UvdE Prefoldin PF02996.12 gi|312136505|ref|YP_004003842.1| - 0.0045 16.6 0.4 0.32 10.6 0.1 2.9 3 0 0 3 3 3 1 Prefoldin subunit AAA PF00004.24 gi|312136506|ref|YP_004003843.1| - 1.6e-36 125.3 0.0 3.5e-36 124.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|312136506|ref|YP_004003843.1| - 6.9e-10 38.3 0.0 8.5e-09 34.7 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|312136506|ref|YP_004003843.1| - 5.7e-08 32.8 0.0 1.6e-07 31.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|312136506|ref|YP_004003843.1| - 3.1e-06 26.1 0.0 5.6e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_5 PF07728.9 gi|312136506|ref|YP_004003843.1| - 5.5e-06 26.1 0.0 3.3e-05 23.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|312136506|ref|YP_004003843.1| - 0.0001 23.1 0.0 0.00038 21.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|312136506|ref|YP_004003843.1| - 0.00041 19.5 0.1 0.00095 18.3 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|312136506|ref|YP_004003843.1| - 0.00042 20.4 0.1 0.002 18.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|312136506|ref|YP_004003843.1| - 0.0012 18.7 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|312136506|ref|YP_004003843.1| - 0.0013 17.7 0.0 0.0027 16.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|312136506|ref|YP_004003843.1| - 0.0013 18.7 0.0 0.0049 16.8 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|312136506|ref|YP_004003843.1| - 0.0018 17.8 0.5 0.011 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|312136506|ref|YP_004003843.1| - 0.0039 16.8 0.1 0.073 12.7 0.0 2.6 1 1 1 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|312136506|ref|YP_004003843.1| - 0.0052 17.0 2.3 0.0084 16.4 0.0 2.4 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|312136506|ref|YP_004003843.1| - 0.0087 15.4 0.1 0.031 13.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|312136506|ref|YP_004003843.1| - 0.0092 16.1 0.0 0.028 14.5 0.0 1.9 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.12 gi|312136506|ref|YP_004003843.1| - 0.011 15.2 0.0 0.02 14.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|312136506|ref|YP_004003843.1| - 0.013 15.3 0.0 0.033 14.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|312136506|ref|YP_004003843.1| - 0.027 14.3 0.0 0.081 12.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|312136506|ref|YP_004003843.1| - 0.039 13.0 0.1 1.7 7.6 0.0 2.6 1 1 1 2 2 2 0 KaiC Parvo_NS1 PF01057.12 gi|312136506|ref|YP_004003843.1| - 0.046 12.5 0.1 0.12 11.2 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 T2SE PF00437.15 gi|312136506|ref|YP_004003843.1| - 0.047 12.5 0.0 0.089 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_3 PF07726.6 gi|312136506|ref|YP_004003843.1| - 0.048 13.2 0.0 0.12 12.0 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|312136506|ref|YP_004003843.1| - 0.082 12.4 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Nitroreductase PF00881.19 gi|312136507|ref|YP_004003844.1| - 2.4e-40 138.0 0.0 2.8e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|312136507|ref|YP_004003844.1| - 0.013 14.6 0.5 0.055 12.6 0.1 2.1 1 1 1 2 2 2 0 Putative TM nitroreductase Epimerase PF01370.16 gi|312136508|ref|YP_004003845.1| - 1.2e-67 227.7 0.0 7e-51 172.9 0.0 2.3 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|312136508|ref|YP_004003845.1| - 2.9e-18 65.7 0.0 1.5e-14 53.5 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|312136508|ref|YP_004003845.1| - 7.4e-17 60.9 0.0 1.2e-09 37.3 0.0 2.3 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|312136508|ref|YP_004003845.1| - 6.3e-14 51.5 0.0 2.2e-10 39.8 0.0 2.7 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|312136508|ref|YP_004003845.1| - 3.5e-13 49.1 0.0 4.3e-06 25.8 0.0 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Intein_splicing PF14890.1 gi|312136508|ref|YP_004003845.1| - 0.00026 19.9 7.9 0.0065 15.3 0.3 2.7 1 1 1 2 2 2 2 Intein splicing domain adh_short PF00106.20 gi|312136508|ref|YP_004003845.1| - 0.0084 16.0 0.0 0.37 10.6 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|312136508|ref|YP_004003845.1| - 0.0098 15.1 0.1 0.092 11.9 0.0 2.3 3 0 0 3 3 3 1 NmrA-like family NAD_binding_10 PF13460.1 gi|312136508|ref|YP_004003845.1| - 0.013 15.4 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 NADH(P)-binding Epimerase_Csub PF13950.1 gi|312136508|ref|YP_004003845.1| - 0.023 14.6 0.0 0.074 13.0 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit dTDP_sugar_isom PF00908.12 gi|312136509|ref|YP_004003846.1| - 4.3e-76 254.1 0.1 4.9e-76 253.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Alpha_kinase PF02816.13 gi|312136509|ref|YP_004003846.1| - 0.04 13.5 0.2 0.059 13.0 0.1 1.3 1 0 0 1 1 1 0 Alpha-kinase family PcrB PF01884.12 gi|312136510|ref|YP_004003847.1| - 1.8e-89 299.0 1.6 2e-89 298.8 1.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|312136510|ref|YP_004003847.1| - 9.3e-10 38.1 0.4 1.5e-09 37.4 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|312136510|ref|YP_004003847.1| - 3.1e-06 25.9 0.8 7.4e-06 24.6 0.3 1.8 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DHO_dh PF01180.16 gi|312136510|ref|YP_004003847.1| - 2e-05 23.6 1.0 3e-05 23.1 0.2 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|312136510|ref|YP_004003847.1| - 2.3e-05 23.4 0.4 5.5e-05 22.2 0.2 1.5 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.20 gi|312136510|ref|YP_004003847.1| - 3.5e-05 22.8 0.3 0.00015 20.7 0.1 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|312136510|ref|YP_004003847.1| - 0.00012 21.1 0.4 0.00068 18.6 0.2 2.0 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|312136510|ref|YP_004003847.1| - 0.00044 19.3 0.4 0.0024 16.9 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.14 gi|312136510|ref|YP_004003847.1| - 0.00054 19.1 0.2 0.00085 18.4 0.1 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|312136510|ref|YP_004003847.1| - 0.0017 17.2 0.5 0.0057 15.5 0.1 2.0 2 1 1 3 3 3 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|312136510|ref|YP_004003847.1| - 0.0029 16.7 0.3 0.012 14.7 0.1 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|312136510|ref|YP_004003847.1| - 0.0031 16.6 0.8 0.0095 15.0 0.1 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|312136510|ref|YP_004003847.1| - 0.0035 16.2 0.1 0.057 12.2 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.1 gi|312136510|ref|YP_004003847.1| - 0.022 13.9 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase QRPTase_C PF01729.14 gi|312136510|ref|YP_004003847.1| - 0.025 14.1 0.2 0.45 10.0 0.1 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain NMO PF03060.10 gi|312136510|ref|YP_004003847.1| - 0.041 13.0 0.1 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase DUF498 PF04430.9 gi|312136511|ref|YP_004003848.1| - 1.7e-19 69.3 0.0 1.9e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) SIR2_2 PF13289.1 gi|312136511|ref|YP_004003848.1| - 0.035 13.9 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 SIR2-like domain DJ-1_PfpI PF01965.19 gi|312136511|ref|YP_004003848.1| - 0.082 12.3 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family NAD_binding_7 PF13241.1 gi|312136511|ref|YP_004003848.1| - 0.089 13.0 1.0 0.51 10.6 0.1 2.1 1 1 0 2 2 2 0 Putative NAD(P)-binding MetW PF07021.7 gi|312136511|ref|YP_004003848.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Gate PF07670.9 gi|312136512|ref|YP_004003849.1| - 1.1e-12 47.7 27.0 3.8e-07 29.9 7.4 3.1 2 2 1 3 3 3 2 Nucleoside recognition RmlD_sub_bind PF04321.12 gi|312136513|ref|YP_004003850.1| - 2e-100 335.4 0.0 2.2e-100 335.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|312136513|ref|YP_004003850.1| - 2.5e-20 72.9 0.0 3.3e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|312136513|ref|YP_004003850.1| - 1.2e-13 50.3 1.1 1.3e-10 40.5 0.2 2.2 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|312136513|ref|YP_004003850.1| - 1.5e-12 47.0 0.1 1.7e-09 36.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|312136513|ref|YP_004003850.1| - 1.8e-11 43.4 1.2 9.4e-09 34.5 0.1 2.9 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein DXP_reductoisom PF02670.11 gi|312136513|ref|YP_004003850.1| - 0.00093 19.7 0.1 0.0018 18.8 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Semialdhyde_dh PF01118.19 gi|312136513|ref|YP_004003850.1| - 0.025 14.9 0.0 0.099 12.9 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|312136513|ref|YP_004003850.1| - 0.042 13.0 0.0 3.6 6.7 0.0 2.1 2 0 0 2 2 2 0 NmrA-like family DapB_N PF01113.15 gi|312136513|ref|YP_004003850.1| - 0.079 12.8 0.1 0.19 11.6 0.1 1.6 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.18 gi|312136514|ref|YP_004003851.1| - 1e-67 228.0 0.0 1.2e-67 227.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|312136514|ref|YP_004003851.1| - 2.9e-10 40.4 0.0 3.9e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain zf-ribbon_3 PF13248.1 gi|312136515|ref|YP_004003852.1| - 0.00012 21.2 2.6 0.00015 20.8 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.12 gi|312136515|ref|YP_004003852.1| - 0.00079 18.9 7.3 0.00089 18.8 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|312136515|ref|YP_004003852.1| - 0.0015 18.3 1.1 0.0018 18.0 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312136515|ref|YP_004003852.1| - 0.0094 15.4 3.6 0.014 14.8 2.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|312136515|ref|YP_004003852.1| - 0.048 13.1 3.7 0.071 12.5 2.6 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|312136515|ref|YP_004003852.1| - 0.092 11.8 3.1 0.13 11.3 2.1 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|312136515|ref|YP_004003852.1| - 0.11 11.9 1.2 0.12 11.7 0.8 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase Fer4_2 PF12797.2 gi|312136515|ref|YP_004003852.1| - 0.23 11.4 1.4 5.3 7.1 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain UPF0547 PF10571.4 gi|312136515|ref|YP_004003852.1| - 0.43 10.3 3.1 0.66 9.7 0.3 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|312136515|ref|YP_004003852.1| - 3.5 7.4 6.3 14 5.4 4.3 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF367 PF04034.8 gi|312136516|ref|YP_004003853.1| - 2.9e-48 162.6 0.0 3.5e-48 162.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|312136516|ref|YP_004003853.1| - 2.3e-06 27.0 0.2 4e-06 26.3 0.1 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI VWA_2 PF13519.1 gi|312136517|ref|YP_004003854.1| - 4.1e-19 69.3 0.0 5.5e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|312136517|ref|YP_004003854.1| - 1.4e-12 47.6 0.1 2e-12 47.2 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|312136517|ref|YP_004003854.1| - 3.2e-10 39.9 0.0 4.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|312136517|ref|YP_004003854.1| - 8e-06 25.1 0.0 3.8e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|312136517|ref|YP_004003854.1| - 0.00051 19.9 0.0 0.00078 19.3 0.0 1.3 1 0 0 1 1 1 1 vWA found in TerF C terminus DUF444 PF04285.7 gi|312136517|ref|YP_004003854.1| - 0.0037 15.9 0.4 0.0072 15.0 0.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF444) Copine PF07002.11 gi|312136517|ref|YP_004003854.1| - 0.042 13.5 0.0 0.091 12.5 0.0 1.5 1 0 0 1 1 1 0 Copine DUF2828 PF11443.3 gi|312136517|ref|YP_004003854.1| - 0.045 11.9 0.0 0.045 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) Radical_SAM PF04055.16 gi|312136517|ref|YP_004003854.1| - 0.055 13.6 0.3 0.76 9.9 0.0 2.2 1 1 1 2 2 2 0 Radical SAM superfamily DUF2849 PF11011.3 gi|312136517|ref|YP_004003854.1| - 0.12 12.6 0.1 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2849) Mg_chelatase PF01078.16 gi|312136518|ref|YP_004003855.1| - 4.1e-11 42.4 0.2 2.8e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|312136518|ref|YP_004003855.1| - 2.2e-09 37.1 0.0 0.00029 20.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|312136518|ref|YP_004003855.1| - 9.3e-05 21.3 3.3 0.014 14.2 0.3 3.5 2 2 0 2 2 2 1 MCM2/3/5 family AAA_22 PF13401.1 gi|312136518|ref|YP_004003855.1| - 9.5e-05 22.5 0.9 0.00029 20.9 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|312136518|ref|YP_004003855.1| - 0.00052 20.0 0.0 0.0015 18.5 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|312136518|ref|YP_004003855.1| - 0.00065 19.2 0.2 1.4 8.3 0.0 2.7 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA PF00004.24 gi|312136518|ref|YP_004003855.1| - 0.0012 19.0 0.6 0.0046 17.1 0.1 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|312136518|ref|YP_004003855.1| - 0.0014 19.4 2.4 0.022 15.6 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|312136518|ref|YP_004003855.1| - 0.0035 17.0 0.1 0.0093 15.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_3 PF07726.6 gi|312136518|ref|YP_004003855.1| - 0.0038 16.8 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Mg_chelatase_2 PF13335.1 gi|312136518|ref|YP_004003855.1| - 0.0079 16.5 0.5 0.0079 16.5 0.3 2.1 2 1 0 2 2 1 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|312136518|ref|YP_004003855.1| - 0.03 13.8 0.3 0.16 11.4 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|312136518|ref|YP_004003855.1| - 0.03 13.9 0.2 0.11 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|312136518|ref|YP_004003855.1| - 0.034 13.6 0.1 0.07 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Latrotoxin_C PF15658.1 gi|312136518|ref|YP_004003855.1| - 0.035 13.9 2.8 0.075 12.8 1.9 1.5 1 0 0 1 1 1 0 Latrotoxin C-terminal domain Sigma54_activ_2 PF14532.1 gi|312136518|ref|YP_004003855.1| - 0.039 13.9 0.1 4.9 7.1 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|312136518|ref|YP_004003855.1| - 0.041 14.1 0.3 0.041 14.1 0.2 2.7 1 1 1 2 2 2 0 AAA domain TFIID-31kDa PF02291.10 gi|312136518|ref|YP_004003855.1| - 0.043 13.6 0.1 0.083 12.6 0.1 1.5 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit NACHT PF05729.7 gi|312136518|ref|YP_004003855.1| - 0.051 13.2 0.1 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TP6A_N PF04406.9 gi|312136519|ref|YP_004003856.1| - 1.6e-21 75.7 0.0 2.9e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Toprim_2 PF13155.1 gi|312136519|ref|YP_004003856.1| - 0.0094 16.2 0.0 0.03 14.6 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Topo-VIb_trans PF09239.6 gi|312136520|ref|YP_004003857.1| - 7.5e-63 210.8 0.0 1.2e-62 210.2 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|312136520|ref|YP_004003857.1| - 6.5e-15 54.8 0.0 1.2e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|312136520|ref|YP_004003857.1| - 9.2e-10 38.3 0.0 1.8e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KH_1 PF00013.24 gi|312136521|ref|YP_004003858.1| - 4.7e-18 64.5 13.9 7.9e-10 38.2 1.4 2.5 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|312136521|ref|YP_004003858.1| - 1.4e-11 43.7 7.7 1.4e-05 24.5 0.8 2.8 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|312136521|ref|YP_004003858.1| - 9.8e-06 25.0 10.4 0.0038 16.7 0.3 3.1 2 2 1 3 3 3 2 KH domain KH_4 PF13083.1 gi|312136521|ref|YP_004003858.1| - 0.00016 21.2 2.3 0.32 10.6 0.6 2.8 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|312136521|ref|YP_004003858.1| - 0.67 9.8 5.4 8.2 6.3 0.6 2.6 2 1 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.17 gi|312136522|ref|YP_004003859.1| - 1.1e-59 200.9 0.2 1.9e-59 200.1 0.1 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|312136522|ref|YP_004003859.1| - 0.0032 17.2 0.1 0.024 14.3 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|312136522|ref|YP_004003859.1| - 0.02 13.9 0.1 0.57 9.2 0.0 2.5 2 1 1 3 3 3 0 Lipopolysaccharide kinase (Kdo/WaaP) family TetR_C_4 PF08359.6 gi|312136522|ref|YP_004003859.1| - 0.071 13.0 0.3 0.16 11.8 0.2 1.7 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region eIF-1a PF01176.14 gi|312136523|ref|YP_004003860.1| - 4.9e-26 89.9 2.4 6.1e-26 89.6 1.2 1.4 1 1 1 2 2 2 1 Translation initiation factor 1A / IF-1 MoeA_N PF03453.12 gi|312136524|ref|YP_004003861.1| - 1.8e-49 167.2 0.0 2.7e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|312136524|ref|YP_004003861.1| - 5.1e-31 107.0 0.5 7.9e-31 106.4 0.4 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|312136524|ref|YP_004003861.1| - 7.5e-14 51.4 0.0 2e-13 50.1 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) T2SE PF00437.15 gi|312136524|ref|YP_004003861.1| - 0.086 11.7 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiJ PF02571.9 gi|312136525|ref|YP_004003862.1| - 1.8e-61 207.6 0.0 2e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK AP_endonuc_2 PF01261.19 gi|312136525|ref|YP_004003862.1| - 0.00055 19.2 0.1 0.067 12.4 0.0 2.5 2 1 1 3 3 3 1 Xylose isomerase-like TIM barrel ADH_zinc_N PF00107.21 gi|312136525|ref|YP_004003862.1| - 0.002 17.6 0.2 0.011 15.2 0.1 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glycos_transf_N PF04413.11 gi|312136525|ref|YP_004003862.1| - 0.005 16.0 0.0 0.01 15.0 0.0 1.5 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Peripla_BP_4 PF13407.1 gi|312136525|ref|YP_004003862.1| - 0.0094 15.3 0.1 0.061 12.6 0.0 2.3 1 1 1 2 2 2 1 Periplasmic binding protein domain DapB_N PF01113.15 gi|312136525|ref|YP_004003862.1| - 0.01 15.7 0.3 0.034 14.0 0.1 1.9 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|312136525|ref|YP_004003862.1| - 0.029 13.3 0.1 0.037 13.0 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Response_reg PF00072.19 gi|312136525|ref|YP_004003862.1| - 0.041 13.8 0.3 0.2 11.6 0.0 2.2 2 1 1 3 3 3 0 Response regulator receiver domain NAD_binding_10 PF13460.1 gi|312136525|ref|YP_004003862.1| - 0.11 12.5 0.1 0.19 11.7 0.0 1.5 2 0 0 2 2 2 0 NADH(P)-binding SpoU_sub_bind PF08032.7 gi|312136525|ref|YP_004003862.1| - 0.57 10.3 3.3 7.8 6.7 0.3 3.2 2 1 1 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding E1-E2_ATPase PF00122.15 gi|312136526|ref|YP_004003863.1| - 3.2e-78 261.9 6.3 3.2e-78 261.9 4.4 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|312136526|ref|YP_004003863.1| - 1.4e-41 142.0 9.1 1.4e-41 142.0 6.3 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|312136526|ref|YP_004003863.1| - 3.7e-39 135.3 0.1 7.9e-39 134.2 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|312136526|ref|YP_004003863.1| - 1.9e-27 95.0 0.4 5.8e-27 93.4 0.1 2.0 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|312136526|ref|YP_004003863.1| - 9.9e-20 71.5 0.1 2.2e-19 70.3 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|312136526|ref|YP_004003863.1| - 3.2e-17 61.7 0.1 7.5e-17 60.5 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|312136526|ref|YP_004003863.1| - 6.2e-07 29.2 9.2 1.6e-06 27.9 0.5 3.7 4 0 0 4 4 4 1 haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|312136526|ref|YP_004003863.1| - 0.078 12.3 1.4 6 6.3 0.1 3.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|312136526|ref|YP_004003863.1| - 0.094 12.3 0.0 30 4.3 0.0 3.1 3 0 0 3 3 3 0 MarR family Ninjurin PF04923.7 gi|312136526|ref|YP_004003863.1| - 2.4 7.9 8.8 0.16 11.6 0.5 3.1 3 0 0 3 3 3 0 Ninjurin UPF0146 PF03686.8 gi|312136527|ref|YP_004003864.1| - 1.3e-37 128.3 1.1 1.5e-37 128.2 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Acetyltransf_1 PF00583.19 gi|312136528|ref|YP_004003865.1| - 3.4e-22 78.2 0.1 4.4e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|312136528|ref|YP_004003865.1| - 1.6e-15 56.9 0.2 2.2e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|312136528|ref|YP_004003865.1| - 4.3e-13 49.5 1.3 7.6e-13 48.6 0.7 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|312136528|ref|YP_004003865.1| - 1.4e-12 47.2 0.1 1.8e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|312136528|ref|YP_004003865.1| - 1.8e-12 47.4 0.0 2.3e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|312136528|ref|YP_004003865.1| - 3.9e-09 36.8 0.2 2.8e-08 34.0 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|312136528|ref|YP_004003865.1| - 1.4e-07 31.4 0.0 2.8e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|312136528|ref|YP_004003865.1| - 4.8e-05 23.2 0.0 0.00017 21.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|312136528|ref|YP_004003865.1| - 9.7e-05 21.9 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|312136528|ref|YP_004003865.1| - 0.00032 20.5 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Gly_acyl_tr_C PF08444.5 gi|312136528|ref|YP_004003865.1| - 0.0027 17.6 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region RVT_3 PF13456.1 gi|312136528|ref|YP_004003865.1| - 0.057 13.1 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like MxiM PF11441.3 gi|312136528|ref|YP_004003865.1| - 0.072 13.1 1.6 0.089 12.8 0.4 1.6 1 1 1 2 2 2 0 Pilot protein MxiM CPSase_sm_chain PF00988.17 gi|312136529|ref|YP_004003866.1| - 7.7e-52 174.2 0.0 1.2e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|312136529|ref|YP_004003866.1| - 2.9e-46 157.3 0.0 4.2e-46 156.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|312136529|ref|YP_004003866.1| - 1.8e-10 40.6 0.0 1.8e-08 34.1 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 RRM_1 PF00076.17 gi|312136529|ref|YP_004003866.1| - 0.014 15.0 0.0 0.052 13.1 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CPSase_L_D2 PF02786.12 gi|312136530|ref|YP_004003867.1| - 1.1e-117 390.7 0.4 5.8e-77 257.7 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|312136530|ref|YP_004003867.1| - 3.2e-49 165.6 0.0 3.9e-24 84.8 0.0 2.8 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|312136530|ref|YP_004003867.1| - 3.6e-48 162.4 4.0 5.4e-48 161.8 1.3 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|312136530|ref|YP_004003867.1| - 2.6e-42 144.6 0.3 5.7e-21 75.0 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|312136530|ref|YP_004003867.1| - 1.1e-35 122.9 0.0 1.9e-16 59.7 0.0 3.8 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|312136530|ref|YP_004003867.1| - 3.8e-24 84.9 0.2 1.4e-11 44.0 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|312136530|ref|YP_004003867.1| - 5.6e-20 71.6 0.5 1.1e-08 34.6 0.1 2.7 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus MGS PF02142.17 gi|312136530|ref|YP_004003867.1| - 1.5e-19 69.7 0.9 3.1e-18 65.4 0.2 3.7 4 0 0 4 4 3 1 MGS-like domain ATP-grasp_3 PF02655.9 gi|312136530|ref|YP_004003867.1| - 1.2e-15 57.7 2.3 7.8e-07 29.0 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|312136530|ref|YP_004003867.1| - 8.5e-15 54.7 0.2 1.5e-06 27.8 0.0 3.6 2 1 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|312136530|ref|YP_004003867.1| - 7.1e-13 48.5 0.9 1.3e-05 24.8 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|312136530|ref|YP_004003867.1| - 1.7e-07 30.6 0.0 0.0025 17.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|312136530|ref|YP_004003867.1| - 3.1e-07 29.9 0.2 0.012 15.0 0.1 2.9 2 0 0 2 2 2 2 ATP-grasp domain HTH_23 PF13384.1 gi|312136530|ref|YP_004003867.1| - 2.6e-05 23.6 2.7 0.001 18.6 0.1 3.5 4 0 0 4 4 4 1 Homeodomain-like domain B12-binding PF02310.14 gi|312136530|ref|YP_004003867.1| - 0.002 17.9 0.1 0.25 11.2 0.0 3.1 3 0 0 3 3 3 1 B12 binding domain HTH_19 PF12844.2 gi|312136530|ref|YP_004003867.1| - 0.0078 16.2 2.0 0.065 13.2 0.2 3.6 4 1 0 4 4 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|312136530|ref|YP_004003867.1| - 0.027 14.7 0.1 0.12 12.6 0.1 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|312136530|ref|YP_004003867.1| - 0.046 13.4 0.5 19 5.1 0.0 3.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein Peripla_BP_5 PF13433.1 gi|312136530|ref|YP_004003867.1| - 0.051 12.3 0.0 2.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain HTH_3 PF01381.17 gi|312136530|ref|YP_004003867.1| - 0.083 12.7 0.8 0.91 9.4 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix Peripla_BP_6 PF13458.1 gi|312136530|ref|YP_004003867.1| - 0.17 11.1 0.0 16 4.6 0.0 2.6 2 0 0 2 2 2 0 Periplasmic binding protein DUF310 PF03750.8 gi|312136530|ref|YP_004003867.1| - 1.8 8.7 5.3 1.7 8.8 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF310) Robl_LC7 PF03259.12 gi|312136531|ref|YP_004003868.1| - 8.2e-20 70.1 0.3 1e-19 69.8 0.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|312136531|ref|YP_004003868.1| - 0.075 12.6 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF473 PF04322.7 gi|312136531|ref|YP_004003868.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) DUF1611 PF07755.6 gi|312136532|ref|YP_004003869.1| - 5.4e-70 235.4 0.0 6.6e-70 235.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CoA_binding PF02629.14 gi|312136532|ref|YP_004003869.1| - 0.012 16.0 0.1 0.11 13.0 0.0 2.5 3 0 0 3 3 3 0 CoA binding domain NAD_binding_3 PF03447.11 gi|312136532|ref|YP_004003869.1| - 0.035 14.4 0.0 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain DUF2458 PF10454.4 gi|312136532|ref|YP_004003869.1| - 0.076 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) DUF552 PF04472.7 gi|312136533|ref|YP_004003870.1| - 5.1e-08 32.7 1.1 7.2e-08 32.2 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Cactin_mid PF10312.4 gi|312136533|ref|YP_004003870.1| - 0.039 13.1 0.6 0.039 13.1 0.4 1.6 1 1 1 2 2 2 0 Conserved mid region of cactin Dak1_2 PF13684.1 gi|312136533|ref|YP_004003870.1| - 0.12 11.3 1.0 0.13 11.1 0.7 1.2 1 0 0 1 1 1 0 Dihydroxyacetone kinase family DUF4200 PF13863.1 gi|312136533|ref|YP_004003870.1| - 0.23 11.4 1.7 0.72 9.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Tbf5 PF06331.7 gi|312136533|ref|YP_004003870.1| - 1.4 8.7 4.2 4 7.2 0.2 2.3 1 1 1 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 DUF2226 PF09987.4 gi|312136534|ref|YP_004003871.1| - 2.2e-12 46.7 27.8 1e-06 28.1 12.9 2.9 1 1 2 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2226) DUF4388 PF14332.1 gi|312136534|ref|YP_004003871.1| - 9.6e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) DUF2638 PF10937.3 gi|312136534|ref|YP_004003871.1| - 0.01 16.8 0.3 0.019 16.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2638) Y1_Tnp PF01797.11 gi|312136534|ref|YP_004003871.1| - 0.02 14.7 1.4 0.02 14.7 1.0 2.6 2 1 0 3 3 3 0 Transposase IS200 like Spore_YhcN_YlaJ PF09580.5 gi|312136534|ref|YP_004003871.1| - 0.043 13.9 1.3 0.09 12.8 0.9 1.7 1 1 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) hDGE_amylase PF14701.1 gi|312136534|ref|YP_004003871.1| - 0.073 11.9 13.9 0.051 12.4 8.5 1.4 1 1 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme VIT1 PF01988.14 gi|312136534|ref|YP_004003871.1| - 0.096 12.1 1.6 0.13 11.7 1.1 1.3 1 0 0 1 1 1 0 VIT family CbiA PF01656.18 gi|312136535|ref|YP_004003872.1| - 3.5e-38 130.9 1.8 4.4e-38 130.6 1.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|312136535|ref|YP_004003872.1| - 1e-14 54.7 0.0 1.6e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|312136535|ref|YP_004003872.1| - 3.2e-12 46.1 0.5 5.4e-06 25.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|312136535|ref|YP_004003872.1| - 3.5e-10 39.6 0.0 5.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein AAA_26 PF13500.1 gi|312136535|ref|YP_004003872.1| - 3.7e-08 33.2 7.1 8.2e-07 28.8 4.9 2.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|312136535|ref|YP_004003872.1| - 4.4e-08 32.8 0.4 1.4e-07 31.3 0.1 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|312136535|ref|YP_004003872.1| - 9.2e-08 31.4 3.4 3.2e-07 29.6 1.0 2.1 1 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|312136535|ref|YP_004003872.1| - 2.1e-07 30.3 2.7 1.8e-06 27.2 1.9 2.4 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|312136535|ref|YP_004003872.1| - 0.012 14.9 0.7 0.037 13.4 0.3 1.9 1 1 1 2 2 2 0 AAA domain VirC1 PF07015.6 gi|312136535|ref|YP_004003872.1| - 0.02 13.9 0.2 0.046 12.7 0.2 1.5 1 0 0 1 1 1 0 VirC1 protein APS_kinase PF01583.15 gi|312136535|ref|YP_004003872.1| - 0.024 14.3 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|312136535|ref|YP_004003872.1| - 0.068 12.2 0.1 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|312136535|ref|YP_004003872.1| - 0.11 12.2 1.0 1.9 8.2 0.4 2.5 2 0 0 2 2 2 0 Part of AAA domain SRP54 PF00448.17 gi|312136535|ref|YP_004003872.1| - 0.2 11.0 2.0 0.28 10.6 0.4 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PfkB PF00294.19 gi|312136536|ref|YP_004003873.1| - 1.4e-62 211.5 0.0 1.6e-62 211.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|312136536|ref|YP_004003873.1| - 1.6e-07 30.7 0.1 2.3e-07 30.2 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF261 PF03196.8 gi|312136536|ref|YP_004003873.1| - 0.022 14.7 0.1 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF261 PEPcase_2 PF14010.1 gi|312136537|ref|YP_004003874.1| - 6e-191 635.0 0.4 6.8e-191 634.8 0.3 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Myosin_tail_1 PF01576.14 gi|312136537|ref|YP_004003874.1| - 0.02 12.6 3.4 0.029 12.1 2.3 1.2 1 0 0 1 1 1 0 Myosin tail ApoLp-III PF07464.6 gi|312136538|ref|YP_004003875.1| - 0.06 13.3 4.1 1.2 9.1 0.8 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Prefoldin_2 PF01920.15 gi|312136538|ref|YP_004003875.1| - 0.19 11.5 7.0 0.28 10.9 4.9 1.3 1 0 0 1 1 1 0 Prefoldin subunit CDC37_N PF03234.9 gi|312136538|ref|YP_004003875.1| - 0.23 11.7 3.4 0.29 11.4 2.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4315 PF14193.1 gi|312136538|ref|YP_004003875.1| - 0.24 11.3 7.3 0.57 10.1 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) THUMP PF02926.12 gi|312136539|ref|YP_004003876.1| - 2.3e-13 50.2 5.3 2.7e-13 50.0 3.7 1.1 1 0 0 1 1 1 1 THUMP domain DUF1356 PF07092.7 gi|312136539|ref|YP_004003876.1| - 0.033 13.3 0.2 0.043 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) TIP120 PF08623.5 gi|312136539|ref|YP_004003876.1| - 0.058 12.9 0.9 0.11 12.1 0.3 1.5 1 1 1 2 2 2 0 TATA-binding protein interacting (TIP20) DUF3107 PF11305.3 gi|312136539|ref|YP_004003876.1| - 0.097 12.5 0.1 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) BioY PF02632.9 gi|312136540|ref|YP_004003877.1| - 1.2e-38 132.0 19.2 1.2e-38 132.0 13.3 1.6 1 1 1 2 2 2 1 BioY family Shikimate_DH PF01488.15 gi|312136541|ref|YP_004003878.1| - 5.4e-37 126.9 0.5 5.4e-37 126.9 0.3 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|312136541|ref|YP_004003878.1| - 1e-33 116.0 3.0 1.9e-33 115.2 0.5 2.5 2 1 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|312136541|ref|YP_004003878.1| - 2.8e-23 81.7 8.6 6.4e-23 80.6 6.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|312136541|ref|YP_004003878.1| - 3.1e-08 33.9 0.4 3.1e-08 33.9 0.3 2.8 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|312136541|ref|YP_004003878.1| - 3.3e-07 30.2 0.4 7.9e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|312136541|ref|YP_004003878.1| - 1.1e-06 27.9 0.7 3e-06 26.4 0.0 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|312136541|ref|YP_004003878.1| - 2.6e-06 27.6 0.2 2.6e-06 27.6 0.2 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|312136541|ref|YP_004003878.1| - 2.3e-05 24.5 0.2 6e-05 23.1 0.1 1.8 1 0 0 1 1 1 1 NADH(P)-binding Malic_M PF03949.10 gi|312136541|ref|YP_004003878.1| - 0.00015 21.4 3.7 0.003 17.1 0.8 2.7 1 1 1 2 2 2 1 Malic enzyme, NAD binding domain AdoHcyase_NAD PF00670.16 gi|312136541|ref|YP_004003878.1| - 0.0004 20.2 0.1 0.0011 18.8 0.1 1.8 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|312136541|ref|YP_004003878.1| - 0.00051 19.4 0.0 0.0012 18.2 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|312136541|ref|YP_004003878.1| - 0.00092 18.0 0.1 0.0021 16.9 0.1 1.5 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.14 gi|312136541|ref|YP_004003878.1| - 0.0012 17.9 4.4 0.012 14.7 1.6 3.0 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|312136541|ref|YP_004003878.1| - 0.0012 18.7 1.0 0.003 17.4 0.6 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|312136541|ref|YP_004003878.1| - 0.0012 17.8 0.2 0.0012 17.8 0.1 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|312136541|ref|YP_004003878.1| - 0.0036 17.8 0.3 0.017 15.6 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|312136541|ref|YP_004003878.1| - 0.0065 16.2 1.3 0.047 13.4 0.2 2.8 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|312136541|ref|YP_004003878.1| - 0.0089 15.4 0.0 0.02 14.3 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CPSase_L_chain PF00289.17 gi|312136541|ref|YP_004003878.1| - 0.017 15.2 0.8 0.039 14.0 0.0 2.0 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain adh_short PF00106.20 gi|312136541|ref|YP_004003878.1| - 0.018 14.9 0.2 0.1 12.4 0.1 2.3 3 0 0 3 3 3 0 short chain dehydrogenase 3HCDH_N PF02737.13 gi|312136541|ref|YP_004003878.1| - 0.021 14.4 0.2 0.021 14.4 0.1 3.8 3 1 1 4 4 4 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|312136541|ref|YP_004003878.1| - 0.026 14.5 3.0 0.041 13.8 0.6 2.6 1 1 0 1 1 1 0 TrkA-N domain ThiF PF00899.16 gi|312136541|ref|YP_004003878.1| - 0.033 14.0 0.2 0.033 14.0 0.1 3.7 3 1 1 4 4 4 0 ThiF family Vps8 PF12816.2 gi|312136541|ref|YP_004003878.1| - 0.047 12.9 0.4 12 5.0 0.0 2.7 3 0 0 3 3 3 0 Golgi CORVET complex core vacuolar protein 8 HrpE PF06188.7 gi|312136541|ref|YP_004003878.1| - 0.41 10.3 4.3 0.28 10.9 1.3 1.9 2 0 0 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E ALMT PF11744.3 gi|312136541|ref|YP_004003878.1| - 0.46 9.0 5.0 0.93 8.0 3.5 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter RNB PF00773.14 gi|312136541|ref|YP_004003878.1| - 1.1 8.4 11.0 0.26 10.5 4.4 2.0 2 1 0 2 2 2 0 RNB domain NAD_binding_7 PF13241.1 gi|312136542|ref|YP_004003879.1| - 2.6e-20 72.5 0.3 5.2e-20 71.6 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding IlvN PF07991.7 gi|312136542|ref|YP_004003879.1| - 2.1e-05 23.9 0.0 4.1e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|312136542|ref|YP_004003879.1| - 3e-05 23.2 0.0 5.5e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|312136542|ref|YP_004003879.1| - 4.8e-05 23.4 1.3 0.0017 18.4 0.4 2.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|312136542|ref|YP_004003879.1| - 0.00061 20.1 0.1 0.0015 18.8 0.1 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|312136542|ref|YP_004003879.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|312136542|ref|YP_004003879.1| - 0.019 14.7 0.4 0.3 10.8 0.2 2.5 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CysG_dimeriser PF10414.4 gi|312136542|ref|YP_004003879.1| - 0.021 14.2 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region UPF0158 PF03682.8 gi|312136542|ref|YP_004003879.1| - 0.051 13.1 2.5 0.048 13.2 0.9 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0158) TrkA_N PF02254.13 gi|312136542|ref|YP_004003879.1| - 0.061 13.3 1.1 0.87 9.6 0.0 2.5 3 0 0 3 3 3 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|312136542|ref|YP_004003879.1| - 0.073 13.3 0.1 1.3 9.3 0.0 2.2 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF137 PF02006.11 gi|312136542|ref|YP_004003879.1| - 0.097 12.0 0.8 4.3 6.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF137 FMN_red PF03358.10 gi|312136542|ref|YP_004003879.1| - 0.1 12.1 0.0 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 NADPH-dependent FMN reductase Rossmann-like PF10727.4 gi|312136542|ref|YP_004003879.1| - 0.14 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Antimicrobial_7 PF08102.6 gi|312136542|ref|YP_004003879.1| - 3.3 7.8 7.6 0.66 10.0 0.5 2.9 2 0 0 2 2 2 0 Scorpion antimicrobial peptide UBA PF00627.26 gi|312136543|ref|YP_004003880.1| - 0.0076 16.0 0.1 0.023 14.5 0.0 1.9 1 0 0 1 1 1 1 UBA/TS-N domain HTH_6 PF01418.12 gi|312136543|ref|YP_004003880.1| - 0.016 14.9 0.3 0.023 14.3 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Ribosomal_L30 PF00327.15 gi|312136543|ref|YP_004003880.1| - 0.058 13.0 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein L30p/L7e GrpB PF04229.9 gi|312136543|ref|YP_004003880.1| - 0.077 12.6 0.9 3.2 7.4 0.2 2.2 2 0 0 2 2 2 0 GrpB protein PqqD PF05402.7 gi|312136543|ref|YP_004003880.1| - 0.12 12.3 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) ABC_tran PF00005.22 gi|312136544|ref|YP_004003881.1| - 1.5e-55 187.2 0.0 1.8e-28 99.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|312136544|ref|YP_004003881.1| - 2.9e-12 47.1 0.1 0.0059 16.6 0.0 4.2 2 2 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|312136544|ref|YP_004003881.1| - 3.7e-08 32.7 0.1 0.0003 20.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|312136544|ref|YP_004003881.1| - 1.7e-06 27.4 3.8 0.1 11.7 0.0 3.7 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|312136544|ref|YP_004003881.1| - 5.6e-06 26.1 0.0 0.018 14.9 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|312136544|ref|YP_004003881.1| - 3e-05 24.4 0.4 0.17 12.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|312136544|ref|YP_004003881.1| - 3.8e-05 23.8 0.4 0.23 11.5 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|312136544|ref|YP_004003881.1| - 4.2e-05 22.9 0.7 0.074 12.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|312136544|ref|YP_004003881.1| - 6.9e-05 22.0 0.1 1.4 7.9 0.0 3.9 4 0 0 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|312136544|ref|YP_004003881.1| - 8.4e-05 23.3 3.3 0.0041 17.9 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|312136544|ref|YP_004003881.1| - 0.00012 22.0 0.0 0.045 13.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|312136544|ref|YP_004003881.1| - 0.00015 21.6 0.8 0.11 12.4 0.1 3.1 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|312136544|ref|YP_004003881.1| - 0.00031 20.2 0.3 0.6 9.4 0.1 2.6 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|312136544|ref|YP_004003881.1| - 0.00044 20.2 1.1 1.2 9.0 0.1 2.9 3 1 0 3 3 3 2 AAA ATPase domain MobB PF03205.9 gi|312136544|ref|YP_004003881.1| - 0.001 18.8 0.3 0.44 10.2 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|312136544|ref|YP_004003881.1| - 0.0019 18.6 0.0 1.6 9.2 0.0 2.9 2 0 0 2 2 2 1 Miro-like protein AAA_18 PF13238.1 gi|312136544|ref|YP_004003881.1| - 0.0035 17.6 0.1 0.96 9.7 0.0 3.0 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|312136544|ref|YP_004003881.1| - 0.0039 15.9 0.2 0.19 10.4 0.0 2.3 2 0 0 2 2 2 1 ArgK protein UPF0079 PF02367.12 gi|312136544|ref|YP_004003881.1| - 0.0042 16.7 0.5 3 7.5 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|312136544|ref|YP_004003881.1| - 0.0045 16.4 0.1 1.5 8.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|312136544|ref|YP_004003881.1| - 0.0046 16.0 0.3 0.79 8.7 0.0 2.6 3 0 0 3 3 2 1 Zeta toxin ATP-synt_ab PF00006.20 gi|312136544|ref|YP_004003881.1| - 0.0051 16.3 0.0 0.96 8.9 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|312136544|ref|YP_004003881.1| - 0.0077 15.1 3.3 1.1 8.0 0.2 2.4 2 0 0 2 2 2 2 NB-ARC domain cobW PF02492.14 gi|312136544|ref|YP_004003881.1| - 0.023 14.1 2.2 6.3 6.2 0.0 3.4 4 0 0 4 4 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|312136544|ref|YP_004003881.1| - 0.025 14.1 0.0 5.2 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|312136544|ref|YP_004003881.1| - 0.036 13.6 0.2 5.1 6.6 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Arf PF00025.16 gi|312136544|ref|YP_004003881.1| - 0.049 12.8 0.9 8.6 5.5 0.0 3.0 2 1 1 3 3 3 0 ADP-ribosylation factor family NACHT PF05729.7 gi|312136544|ref|YP_004003881.1| - 0.055 13.1 0.4 13 5.4 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.1 gi|312136544|ref|YP_004003881.1| - 0.073 11.5 0.1 1.5 7.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain PduV-EutP PF10662.4 gi|312136544|ref|YP_004003881.1| - 0.099 12.1 0.6 7.1 6.1 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.12 gi|312136544|ref|YP_004003881.1| - 0.14 11.9 3.0 3 7.5 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function DUF87 Dus PF01207.12 gi|312136545|ref|YP_004003882.1| - 6.3e-16 58.0 0.1 9.4e-16 57.5 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|312136545|ref|YP_004003882.1| - 0.0024 17.1 0.1 0.0076 15.5 0.0 1.8 1 1 0 2 2 2 1 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|312136545|ref|YP_004003882.1| - 0.0083 16.3 0.0 0.044 13.9 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily PcrB PF01884.12 gi|312136545|ref|YP_004003882.1| - 0.022 14.0 0.1 0.29 10.3 0.0 2.1 2 0 0 2 2 2 0 PcrB family IL8 PF00048.15 gi|312136545|ref|YP_004003882.1| - 0.098 12.6 0.7 0.22 11.5 0.5 1.6 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like GGDN PF05165.7 gi|312136546|ref|YP_004003883.1| - 1.5e-106 355.0 0.2 1.8e-106 354.7 0.1 1.0 1 0 0 1 1 1 1 GGDN family DUF3575 PF12099.3 gi|312136546|ref|YP_004003883.1| - 0.025 13.6 0.0 1.8 7.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) UPF0052 PF01933.13 gi|312136547|ref|YP_004003884.1| - 1.5e-53 182.1 0.0 1.8e-53 181.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 F420_ligase PF01996.11 gi|312136548|ref|YP_004003885.1| - 1.8e-77 259.4 2.2 2.1e-77 259.2 1.5 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase IMP_cyclohyd PF07826.6 gi|312136549|ref|YP_004003886.1| - 2.3e-71 239.2 3.1 2.7e-71 239.0 2.1 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TOBE PF03459.12 gi|312136550|ref|YP_004003887.1| - 5.7e-10 39.1 0.1 8.5e-06 25.7 0.0 3.0 3 1 0 3 3 3 2 TOBE domain HTH_1 PF00126.22 gi|312136550|ref|YP_004003887.1| - 2e-06 27.4 0.0 3.3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|312136550|ref|YP_004003887.1| - 0.12 12.0 0.2 11 5.8 0.1 2.4 2 0 0 2 2 2 0 Homeodomain-like domain IGPD PF00475.13 gi|312136551|ref|YP_004003888.1| - 4.8e-58 195.1 0.4 5.8e-58 194.8 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DUF1533 PF07550.6 gi|312136551|ref|YP_004003888.1| - 0.0083 16.0 0.7 0.023 14.6 0.5 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1533) Fer4 PF00037.22 gi|312136552|ref|YP_004003889.1| - 2.3e-11 42.7 12.2 4.9e-06 25.9 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312136552|ref|YP_004003889.1| - 3e-08 33.1 11.2 0.00041 20.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312136552|ref|YP_004003889.1| - 2.3e-07 30.9 24.2 1.7e-06 28.1 9.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136552|ref|YP_004003889.1| - 7.8e-07 28.8 12.5 2.3e-06 27.2 8.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136552|ref|YP_004003889.1| - 3.8e-06 27.1 25.4 0.00014 22.1 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136552|ref|YP_004003889.1| - 9.4e-06 26.2 12.0 0.0032 18.1 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|312136552|ref|YP_004003889.1| - 1.6e-05 24.6 13.3 7.5e-05 22.5 9.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136552|ref|YP_004003889.1| - 3e-05 23.9 12.6 5.9e-05 23.0 8.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136552|ref|YP_004003889.1| - 3.7e-05 23.3 12.4 0.00047 19.9 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312136552|ref|YP_004003889.1| - 0.00051 20.3 13.9 0.076 13.3 2.0 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312136552|ref|YP_004003889.1| - 0.002 18.4 12.4 0.034 14.5 8.6 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|312136552|ref|YP_004003889.1| - 0.0032 17.6 4.6 0.0032 17.6 3.2 2.2 1 1 1 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|312136552|ref|YP_004003889.1| - 0.0044 17.4 18.7 0.1 13.1 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312136552|ref|YP_004003889.1| - 0.084 13.4 1.5 0.084 13.4 1.0 2.5 1 1 2 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|312136552|ref|YP_004003889.1| - 0.089 13.2 14.6 0.17 12.3 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Hep_core_N PF08290.6 gi|312136552|ref|YP_004003889.1| - 0.2 11.1 3.6 0.41 10.1 2.5 1.6 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger NTP_transf_2 PF01909.18 gi|312136553|ref|YP_004003890.1| - 2.3e-05 24.6 2.7 2.5e-05 24.4 0.4 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain DUF2744 PF10910.3 gi|312136553|ref|YP_004003890.1| - 0.041 13.7 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2744) DUF3566 PF12089.3 gi|312136555|ref|YP_004003892.1| - 0.002 18.1 1.2 0.0021 18.0 0.8 1.1 1 0 0 1 1 1 1 Transmembrane domain of unknown function (DUF3566) MtrB PF05440.7 gi|312136555|ref|YP_004003892.1| - 0.048 13.7 2.6 0.057 13.4 1.8 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF2929 PF11151.3 gi|312136555|ref|YP_004003892.1| - 0.066 13.2 2.1 0.14 12.2 0.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) SPC12 PF06645.8 gi|312136555|ref|YP_004003892.1| - 0.13 12.0 0.9 0.15 11.9 0.6 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4389 PF14333.1 gi|312136556|ref|YP_004003893.1| - 0.039 13.6 0.1 0.039 13.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) DUF106 PF01956.11 gi|312136556|ref|YP_004003893.1| - 0.057 12.9 1.2 0.058 12.9 0.8 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF106 Sigma_reg_N PF13800.1 gi|312136556|ref|YP_004003893.1| - 0.092 12.7 2.0 0.093 12.7 1.4 1.0 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Sarcoglycan_1 PF04790.8 gi|312136556|ref|YP_004003893.1| - 0.11 11.6 1.6 0.12 11.5 1.1 1.0 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein CobN-Mg_chel PF02514.11 gi|312136557|ref|YP_004003894.1| - 1.1e-268 894.0 0.0 7.5e-113 377.9 0.0 3.0 3 0 0 3 3 3 3 CobN/Magnesium Chelatase LepA_C PF06421.7 gi|312136557|ref|YP_004003894.1| - 3.2 7.7 6.5 3.8 7.4 0.0 2.8 3 0 0 3 3 3 0 GTP-binding protein LepA C-terminus DUF3344 PF11824.3 gi|312136558|ref|YP_004003895.1| - 6.7e-74 248.6 21.9 1e-73 248.0 15.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) Transglut_C PF00927.17 gi|312136558|ref|YP_004003895.1| - 0.029 14.3 0.6 0.074 13.1 0.1 1.9 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain SoxE PF06525.6 gi|312136559|ref|YP_004003896.1| - 0.028 13.6 0.3 0.037 13.3 0.2 1.2 1 0 0 1 1 1 0 Sulfocyanin (SoxE) DUF169 PF02596.10 gi|312136560|ref|YP_004003897.1| - 1.1e-69 234.2 1.0 1.2e-69 234.0 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Methyltrn_RNA_2 PF04013.7 gi|312136561|ref|YP_004003898.1| - 1.3e-65 220.7 0.0 1.4e-65 220.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.14 gi|312136561|ref|YP_004003898.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 SpoU rRNA Methylase family NTP_transf_3 PF12804.2 gi|312136562|ref|YP_004003899.1| - 2.8e-19 69.7 0.0 3.3e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|312136562|ref|YP_004003899.1| - 2.4e-09 37.1 0.1 3.5e-09 36.5 0.1 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|312136562|ref|YP_004003899.1| - 6.4e-08 32.3 0.0 7.8e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|312136562|ref|YP_004003899.1| - 0.00081 18.4 0.3 0.0011 17.9 0.2 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|312136562|ref|YP_004003899.1| - 0.0015 17.9 0.1 0.0021 17.4 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase Mur_ligase_M PF08245.7 gi|312136564|ref|YP_004003901.1| - 2.5e-24 86.3 1.9 3.7e-24 85.8 0.2 2.2 3 1 0 3 3 3 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|312136564|ref|YP_004003901.1| - 3.4e-11 43.0 0.0 1.3e-09 37.9 0.0 2.9 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain ApbA PF02558.11 gi|312136564|ref|YP_004003901.1| - 2.7e-05 23.6 0.1 0.011 15.2 0.0 3.0 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.14 gi|312136564|ref|YP_004003901.1| - 0.00087 18.3 0.6 0.026 13.6 0.0 2.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IlvN PF07991.7 gi|312136564|ref|YP_004003901.1| - 0.0034 16.7 0.6 0.0069 15.7 0.1 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|312136564|ref|YP_004003901.1| - 0.0039 17.2 0.1 0.012 15.6 0.1 1.9 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|312136564|ref|YP_004003901.1| - 0.004 17.3 2.2 0.031 14.5 0.1 3.3 4 0 0 4 4 3 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|312136564|ref|YP_004003901.1| - 0.0076 15.4 0.3 0.02 14.0 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|312136564|ref|YP_004003901.1| - 0.011 15.6 2.1 0.016 15.0 0.1 2.3 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.21 gi|312136564|ref|YP_004003901.1| - 0.018 14.5 0.0 0.19 11.2 0.0 2.7 2 1 1 3 3 3 0 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|312136564|ref|YP_004003901.1| - 0.019 14.5 0.0 0.066 12.8 0.0 1.9 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|312136564|ref|YP_004003901.1| - 0.022 14.7 0.2 0.099 12.6 0.2 2.3 1 1 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|312136564|ref|YP_004003901.1| - 0.03 14.0 0.3 0.55 9.9 0.0 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DHO_dh PF01180.16 gi|312136564|ref|YP_004003901.1| - 0.064 12.2 14.8 0.2 10.6 0.3 3.2 3 1 0 3 3 3 0 Dihydroorotate dehydrogenase Epimerase PF01370.16 gi|312136564|ref|YP_004003901.1| - 0.12 11.8 0.2 0.39 10.1 0.0 2.0 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family POR PF01558.13 gi|312136564|ref|YP_004003901.1| - 0.17 11.7 2.1 27 4.6 0.0 3.3 2 1 1 3 3 3 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Pyr_redox PF00070.22 gi|312136564|ref|YP_004003901.1| - 0.28 11.5 2.5 0.54 10.7 0.2 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Mur_ligase_M PF08245.7 gi|312136565|ref|YP_004003902.1| - 3.7e-25 89.0 0.0 1e-24 87.6 0.0 1.8 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|312136565|ref|YP_004003902.1| - 3.6e-09 36.5 0.0 8.7e-09 35.3 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Pyr_redox PF00070.22 gi|312136565|ref|YP_004003902.1| - 0.00054 20.3 0.0 0.004 17.5 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase PCMT PF01135.14 gi|312136565|ref|YP_004003902.1| - 0.013 15.0 0.0 0.032 13.7 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) YjeF_N PF03853.10 gi|312136565|ref|YP_004003902.1| - 0.084 12.4 0.0 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 YjeF-related protein N-terminus Glyco_hydro_6 PF01341.12 gi|312136565|ref|YP_004003902.1| - 0.18 11.1 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 6 Metallophos_2 PF12850.2 gi|312136566|ref|YP_004003903.1| - 8.3e-14 51.7 0.0 1.4e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312136566|ref|YP_004003903.1| - 1.6e-12 47.2 0.5 1.3e-11 44.3 0.1 2.3 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase NIF3 PF01784.13 gi|312136566|ref|YP_004003903.1| - 0.02 14.4 0.2 0.027 14.0 0.1 1.4 1 1 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) XkdN PF08890.6 gi|312136566|ref|YP_004003903.1| - 0.045 13.4 5.9 0.065 12.9 3.2 2.0 2 0 0 2 2 2 0 Phage XkdN-like protein Dockerin_1 PF00404.13 gi|312136566|ref|YP_004003903.1| - 0.05 13.3 0.0 0.15 11.7 0.0 1.9 1 0 0 1 1 1 0 Dockerin type I repeat SbcCD_C PF13558.1 gi|312136567|ref|YP_004003904.1| - 9.3e-07 28.6 0.0 2.8e-06 27.1 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|312136567|ref|YP_004003904.1| - 2.3e-06 27.0 0.0 4.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|312136567|ref|YP_004003904.1| - 3.8e-06 26.3 0.1 3.8e-06 26.3 0.1 3.8 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|312136567|ref|YP_004003904.1| - 1.3e-05 25.6 78.3 1.3e-05 25.6 54.3 7.8 1 1 3 4 4 1 1 AAA domain Laminin_II PF06009.7 gi|312136567|ref|YP_004003904.1| - 3.2e-05 23.6 103.0 0.0054 16.4 9.9 6.6 2 2 4 6 6 6 4 Laminin Domain II Reo_sigmaC PF04582.7 gi|312136567|ref|YP_004003904.1| - 6.2e-05 22.3 10.9 0.038 13.1 0.7 4.2 2 2 2 4 4 4 3 Reovirus sigma C capsid protein AAA_21 PF13304.1 gi|312136567|ref|YP_004003904.1| - 0.00032 20.7 16.4 0.00032 20.7 11.4 5.1 1 1 3 4 4 2 1 AAA domain AAA_13 PF13166.1 gi|312136567|ref|YP_004003904.1| - 0.001 17.6 147.2 0.037 12.5 31.4 5.0 1 1 3 4 4 4 4 AAA domain Baculo_PEP_C PF04513.7 gi|312136567|ref|YP_004003904.1| - 0.0025 17.6 23.7 1.2 8.9 0.5 6.0 2 2 3 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.4 gi|312136567|ref|YP_004003904.1| - 0.0062 16.6 11.3 0.0062 16.6 7.8 9.6 5 2 7 12 12 8 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIC PF04977.10 gi|312136567|ref|YP_004003904.1| - 0.0078 15.6 10.9 0.0078 15.6 7.6 11.9 2 2 9 12 12 10 2 Septum formation initiator DUF1664 PF07889.7 gi|312136567|ref|YP_004003904.1| - 0.0091 15.8 5.6 0.0091 15.8 3.9 8.0 3 2 4 7 7 5 3 Protein of unknown function (DUF1664) WXG100 PF06013.7 gi|312136567|ref|YP_004003904.1| - 0.043 13.8 13.1 2 8.4 0.0 7.1 7 2 1 8 8 7 0 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|312136567|ref|YP_004003904.1| - 0.16 10.6 157.5 0.12 11.0 28.3 6.4 1 1 5 6 6 6 0 Spc7 kinetochore protein IncA PF04156.9 gi|312136567|ref|YP_004003904.1| - 0.19 11.3 134.7 0.014 15.0 19.1 6.9 2 1 6 8 8 7 0 IncA protein DUF3885 PF13021.1 gi|312136567|ref|YP_004003904.1| - 0.31 10.7 3.4 0.64 9.7 0.6 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3885) DUF869 PF05911.6 gi|312136567|ref|YP_004003904.1| - 0.72 8.0 125.7 0.22 9.6 40.8 3.3 2 1 2 4 4 4 0 Plant protein of unknown function (DUF869) EzrA PF06160.7 gi|312136567|ref|YP_004003904.1| - 0.77 7.8 119.9 0.0083 14.3 23.8 5.3 1 1 5 6 6 6 0 Septation ring formation regulator, EzrA IFT57 PF10498.4 gi|312136567|ref|YP_004003904.1| - 1.7 7.3 133.6 0.19 10.4 21.9 5.3 2 2 3 5 5 5 0 Intra-flagellar transport protein 57 MCPsignal PF00015.16 gi|312136567|ref|YP_004003904.1| - 2.3 7.6 48.3 0.6 9.6 6.5 5.7 2 2 4 6 6 6 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.7 gi|312136567|ref|YP_004003904.1| - 3.7 7.8 43.6 3 8.1 2.2 7.9 3 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein GAS PF13851.1 gi|312136567|ref|YP_004003904.1| - 8 5.5 173.5 0.28 10.3 22.3 6.7 1 1 5 6 6 6 0 Growth-arrest specific micro-tubule binding Mur_ligase_M PF08245.7 gi|312136568|ref|YP_004003905.1| - 1.8e-25 90.0 3.9 6.2e-24 85.0 0.1 3.1 2 1 1 3 3 3 1 Mur ligase middle domain 2-Hacid_dh_C PF02826.14 gi|312136568|ref|YP_004003905.1| - 0.0017 17.5 0.1 0.0058 15.8 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|312136568|ref|YP_004003905.1| - 0.0044 16.5 0.0 0.03 13.9 0.0 2.3 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.10 gi|312136568|ref|YP_004003905.1| - 0.0052 16.6 0.2 0.016 15.0 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase WIYLD PF10440.4 gi|312136568|ref|YP_004003905.1| - 0.041 13.8 1.0 1.3 9.0 0.0 2.9 3 0 0 3 3 3 0 Ubiquitin-binding WIYLD domain F420_oxidored PF03807.12 gi|312136568|ref|YP_004003905.1| - 0.068 13.6 0.2 1.6 9.1 0.0 3.1 3 1 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent Radical_SAM PF04055.16 gi|312136569|ref|YP_004003906.1| - 3.6e-14 53.2 0.1 9.1e-14 51.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136569|ref|YP_004003906.1| - 1e-09 38.6 1.6 1e-09 38.6 1.1 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136569|ref|YP_004003906.1| - 0.02 14.9 1.6 0.02 14.9 1.1 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Ribosomal_S14 PF00253.16 gi|312136569|ref|YP_004003906.1| - 0.026 13.8 1.6 0.039 13.3 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e tRNA-synt_2d PF01409.15 gi|312136570|ref|YP_004003907.1| - 7.4e-54 182.5 0.0 4e-51 173.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|312136570|ref|YP_004003907.1| - 0.00011 21.0 0.2 0.076 11.7 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|312136570|ref|YP_004003907.1| - 0.00091 18.8 0.0 0.0026 17.3 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) CTP-dep_RFKase PF01982.11 gi|312136571|ref|YP_004003908.1| - 8e-38 128.7 0.1 9.3e-38 128.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|312136571|ref|YP_004003908.1| - 0.03 14.0 0.1 0.71 9.6 0.0 2.6 3 0 0 3 3 3 0 Antidote-toxin recognition MazE DHBP_synthase PF00926.14 gi|312136572|ref|YP_004003909.1| - 1.2e-70 236.7 0.2 1.4e-70 236.5 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CbiA PF01656.18 gi|312136573|ref|YP_004003910.1| - 2.3e-17 63.0 0.8 4.8e-17 62.0 0.6 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|312136573|ref|YP_004003910.1| - 1.3e-15 57.3 0.2 2.6e-15 56.3 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.1 gi|312136573|ref|YP_004003910.1| - 1.7e-12 47.3 2.7 1.2e-06 28.3 0.4 2.4 2 0 0 2 2 2 2 AAA domain GATase_5 PF13507.1 gi|312136573|ref|YP_004003910.1| - 4.7e-05 22.4 0.0 0.00063 18.7 0.0 2.5 3 0 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|312136573|ref|YP_004003910.1| - 0.0028 17.1 0.1 0.0059 16.0 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I KdpD PF02702.12 gi|312136573|ref|YP_004003910.1| - 0.0028 16.8 0.1 0.0062 15.6 0.1 1.6 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DJ-1_PfpI PF01965.19 gi|312136573|ref|YP_004003910.1| - 0.0051 16.2 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|312136573|ref|YP_004003910.1| - 0.0095 15.2 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 1 Putative amidotransferase Leu_zip PF15294.1 gi|312136573|ref|YP_004003910.1| - 0.046 12.8 2.3 0.077 12.0 1.6 1.2 1 0 0 1 1 1 0 Leucine zipper Herpes_BLRF2 PF05812.7 gi|312136573|ref|YP_004003910.1| - 0.048 13.4 0.8 0.11 12.2 0.5 1.6 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein HMD PF03201.11 gi|312136574|ref|YP_004003911.1| - 1.7e-27 95.1 0.3 3e-27 94.4 0.2 1.4 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.10 gi|312136574|ref|YP_004003911.1| - 4.4e-07 29.8 0.1 3e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|312136574|ref|YP_004003911.1| - 0.00015 21.2 0.1 0.00032 20.1 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|312136574|ref|YP_004003911.1| - 0.00071 19.9 3.2 0.00085 19.7 0.1 2.5 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.15 gi|312136574|ref|YP_004003911.1| - 0.03 14.2 0.3 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|312136574|ref|YP_004003911.1| - 0.06 12.4 0.1 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HupE_UreJ_2 PF13795.1 gi|312136574|ref|YP_004003911.1| - 0.064 12.7 0.4 0.11 12.0 0.3 1.3 1 0 0 1 1 1 0 HupE / UreJ protein TPR_12 PF13424.1 gi|312136575|ref|YP_004003912.1| - 0.028 14.3 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat nsp9 PF08710.5 gi|312136575|ref|YP_004003912.1| - 0.047 13.8 0.0 0.095 12.8 0.0 1.5 1 1 0 1 1 1 0 nsp9 replicase TPR_11 PF13414.1 gi|312136575|ref|YP_004003912.1| - 0.093 12.3 0.3 0.15 11.7 0.2 1.4 1 0 0 1 1 1 0 TPR repeat TPR_2 PF07719.12 gi|312136575|ref|YP_004003912.1| - 0.1 12.5 0.3 0.31 11.0 0.2 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat CLTH PF10607.4 gi|312136575|ref|YP_004003912.1| - 0.21 11.2 1.9 7.3 6.2 0.1 2.2 1 1 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain DUF4519 PF15012.1 gi|312136576|ref|YP_004003913.1| - 0.024 14.5 0.7 0.026 14.4 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) Peptidase_M24 PF00557.19 gi|312136578|ref|YP_004003915.1| - 1.4e-57 194.6 0.1 1.9e-57 194.2 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|312136578|ref|YP_004003915.1| - 2e-10 41.2 0.0 3.9e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Phage_CII PF05269.6 gi|312136578|ref|YP_004003915.1| - 0.18 11.7 1.5 8.6 6.4 0.0 2.8 3 0 0 3 3 3 0 Bacteriophage CII protein Class_IIIsignal PF04021.7 gi|312136579|ref|YP_004003916.1| - 0.00069 19.2 4.3 0.0012 18.4 2.9 1.5 1 0 0 1 1 1 1 Class III signal peptide PGA_cap PF09587.5 gi|312136580|ref|YP_004003917.1| - 5e-72 242.2 0.1 6e-72 242.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Amidase PF01425.16 gi|312136581|ref|YP_004003918.1| - 1.8e-129 432.4 0.0 2.1e-129 432.2 0.0 1.0 1 0 0 1 1 1 1 Amidase rRNA_processing PF08524.6 gi|312136581|ref|YP_004003918.1| - 0.098 12.4 0.1 0.098 12.4 0.1 1.7 2 0 0 2 2 2 0 rRNA processing Methyltransf_11 PF08241.7 gi|312136582|ref|YP_004003919.1| - 1.7e-24 86.1 0.0 2.3e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|312136582|ref|YP_004003919.1| - 6.3e-17 61.5 0.0 7.6e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312136582|ref|YP_004003919.1| - 7.3e-16 58.7 0.0 1e-15 58.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|312136582|ref|YP_004003919.1| - 4e-14 52.7 0.0 7.1e-14 51.9 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|312136582|ref|YP_004003919.1| - 3.5e-13 49.8 0.0 1.5e-12 47.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|312136582|ref|YP_004003919.1| - 9.9e-12 44.4 0.0 1.4e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|312136582|ref|YP_004003919.1| - 3.6e-11 43.1 0.0 1.2e-10 41.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312136582|ref|YP_004003919.1| - 5.8e-11 42.3 0.0 7.3e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312136582|ref|YP_004003919.1| - 3.1e-08 33.1 0.0 5.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|312136582|ref|YP_004003919.1| - 3.9e-08 32.7 0.0 5.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|312136582|ref|YP_004003919.1| - 1.4e-06 28.0 0.2 1.6e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.15 gi|312136582|ref|YP_004003919.1| - 2.9e-06 26.5 0.0 3.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GidB PF02527.10 gi|312136582|ref|YP_004003919.1| - 5.3e-06 25.6 0.2 6.1e-06 25.4 0.1 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.12 gi|312136582|ref|YP_004003919.1| - 6.8e-06 25.2 0.2 2.3e-05 23.5 0.1 1.9 1 1 0 1 1 1 1 Putative methyltransferase ADH_zinc_N PF00107.21 gi|312136582|ref|YP_004003919.1| - 7.9e-06 25.4 0.0 3.9e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase RrnaAD PF00398.15 gi|312136582|ref|YP_004003919.1| - 1.1e-05 24.6 0.0 1.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CheR PF01739.13 gi|312136582|ref|YP_004003919.1| - 1.4e-05 24.4 0.1 0.018 14.3 0.0 2.2 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.11 gi|312136582|ref|YP_004003919.1| - 1.8e-05 23.3 0.0 1.9e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.10 gi|312136582|ref|YP_004003919.1| - 4e-05 23.3 0.0 0.00047 19.8 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|312136582|ref|YP_004003919.1| - 0.00026 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.13 gi|312136582|ref|YP_004003919.1| - 0.00027 20.5 1.2 0.041 13.3 0.1 2.4 2 1 0 2 2 2 1 DNA methylase UPF0020 PF01170.13 gi|312136582|ref|YP_004003919.1| - 0.00049 19.7 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|312136582|ref|YP_004003919.1| - 0.00054 19.6 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF633 PF04816.7 gi|312136582|ref|YP_004003919.1| - 0.0022 17.3 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF633) Spermine_synth PF01564.12 gi|312136582|ref|YP_004003919.1| - 0.0027 16.6 0.4 0.14 11.0 0.1 2.2 2 0 0 2 2 2 1 Spermine/spermidine synthase Methyltransf_3 PF01596.12 gi|312136582|ref|YP_004003919.1| - 0.0032 16.5 0.4 0.0047 16.0 0.1 1.4 2 0 0 2 2 1 1 O-methyltransferase GCD14 PF08704.5 gi|312136582|ref|YP_004003919.1| - 0.02 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_15 PF09445.5 gi|312136582|ref|YP_004003919.1| - 0.022 14.3 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_5 PF01795.14 gi|312136582|ref|YP_004003919.1| - 0.024 13.8 0.1 0.084 12.1 0.0 1.7 2 0 0 2 2 2 0 MraW methylase family Methyltransf_16 PF10294.4 gi|312136582|ref|YP_004003919.1| - 0.032 13.6 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase AdoMet_MTase PF07757.8 gi|312136582|ref|YP_004003919.1| - 0.062 13.4 0.1 2 8.5 0.0 2.2 1 1 1 2 2 2 0 Predicted AdoMet-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|312136582|ref|YP_004003919.1| - 0.072 12.4 0.0 0.098 12.0 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_2 PF00891.13 gi|312136582|ref|YP_004003919.1| - 0.16 11.1 0.3 0.9 8.6 0.0 1.9 1 1 1 2 2 2 0 O-methyltransferase V4R PF02830.13 gi|312136584|ref|YP_004003921.1| - 1.9e-18 66.0 0.0 3.2e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 V4R domain AIRS_C PF02769.17 gi|312136586|ref|YP_004003923.1| - 1.6e-13 50.8 1.5 2.4e-13 50.3 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|312136586|ref|YP_004003923.1| - 7.8e-11 42.0 0.3 2.1e-10 40.7 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Band_7 PF01145.20 gi|312136586|ref|YP_004003923.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 SPFH domain / Band 7 family GATase PF00117.23 gi|312136587|ref|YP_004003924.1| - 8.3e-37 126.5 0.0 9.2e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|312136587|ref|YP_004003924.1| - 4e-10 39.6 0.0 5.7e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|312136587|ref|YP_004003924.1| - 1.8e-08 34.1 0.0 2.4e-08 33.7 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|312136587|ref|YP_004003924.1| - 2.7e-05 23.7 0.8 0.0032 16.9 0.1 2.4 2 1 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.19 gi|312136587|ref|YP_004003924.1| - 0.00021 20.7 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF2124 PF09897.4 gi|312136587|ref|YP_004003924.1| - 0.0049 16.5 0.1 0.0077 15.9 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) NTP_transferase PF00483.18 gi|312136588|ref|YP_004003925.1| - 3.2e-32 111.7 0.0 9.7e-32 110.2 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.13 gi|312136588|ref|YP_004003925.1| - 1.4e-10 40.9 0.2 2.5e-10 40.1 0.1 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transf_3 PF12804.2 gi|312136588|ref|YP_004003925.1| - 4.1e-09 36.7 0.0 5.6e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cupin_2 PF07883.6 gi|312136588|ref|YP_004003925.1| - 4.1e-09 35.7 0.3 8.9e-09 34.7 0.0 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|312136588|ref|YP_004003925.1| - 0.00073 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain DUF1947 PF09183.5 gi|312136588|ref|YP_004003925.1| - 0.00079 19.1 1.7 0.0067 16.1 0.2 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) Cupin_1 PF00190.17 gi|312136588|ref|YP_004003925.1| - 0.0014 18.0 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 Cupin Oxidored_nitro PF00148.14 gi|312136589|ref|YP_004003926.1| - 7.8e-23 80.7 0.1 1.2e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase CW_binding_2 PF04122.7 gi|312136589|ref|YP_004003926.1| - 0.029 14.5 0.6 0.073 13.2 0.1 1.9 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 HGTP_anticodon PF03129.15 gi|312136589|ref|YP_004003926.1| - 0.086 12.7 0.3 1.7 8.6 0.0 2.7 3 0 0 3 3 3 0 Anticodon binding domain MbeB_N PF04837.7 gi|312136589|ref|YP_004003926.1| - 0.11 12.6 0.1 1 9.4 0.0 2.5 2 0 0 2 2 2 0 MbeB-like, N-term conserved region Peptidase_S66 PF02016.10 gi|312136589|ref|YP_004003926.1| - 0.12 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 LD-carboxypeptidase SOR_SNZ PF01680.12 gi|312136590|ref|YP_004003927.1| - 1.3e-113 377.6 8.7 1.8e-113 377.2 6.0 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|312136590|ref|YP_004003927.1| - 8.6e-09 34.8 9.1 6.6e-07 28.6 0.2 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|312136590|ref|YP_004003927.1| - 0.00022 20.5 0.1 0.00022 20.5 0.1 2.2 2 1 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|312136590|ref|YP_004003927.1| - 0.00031 19.7 1.6 0.0044 16.0 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|312136590|ref|YP_004003927.1| - 0.0006 18.7 0.1 0.1 11.3 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ETF PF01012.16 gi|312136590|ref|YP_004003927.1| - 0.0013 18.4 0.0 0.0036 17.0 0.0 1.8 1 0 0 1 1 1 1 Electron transfer flavoprotein domain IGPS PF00218.16 gi|312136590|ref|YP_004003927.1| - 0.0027 16.8 0.1 0.013 14.5 0.0 2.0 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|312136590|ref|YP_004003927.1| - 0.0048 16.1 0.2 0.038 13.2 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|312136590|ref|YP_004003927.1| - 0.005 16.1 0.0 0.013 14.7 0.0 1.7 1 0 0 1 1 1 1 PcrB family TMP-TENI PF02581.12 gi|312136590|ref|YP_004003927.1| - 0.032 13.3 0.8 0.47 9.5 0.1 2.5 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI DUF515 PF04415.7 gi|312136591|ref|YP_004003928.1| - 1.3e-78 264.0 0.7 3.7e-39 134.1 0.5 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF515) DUF4376 PF14301.1 gi|312136591|ref|YP_004003928.1| - 0.0069 16.4 1.5 3.1 7.9 0.1 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4376) GA PF01468.12 gi|312136591|ref|YP_004003928.1| - 0.046 13.8 0.5 0.15 12.2 0.3 1.9 1 1 0 1 1 1 0 GA module Class_IIIsignal PF04021.7 gi|312136592|ref|YP_004003929.1| - 1.4e-05 24.6 2.0 1.7e-05 24.3 1.4 1.1 1 0 0 1 1 1 1 Class III signal peptide Flp_Fap PF04964.9 gi|312136592|ref|YP_004003929.1| - 0.013 15.1 0.5 0.02 14.4 0.3 1.3 1 0 0 1 1 1 0 Flp/Fap pilin component Class_IIIsignal PF04021.7 gi|312136593|ref|YP_004003930.1| - 2.9e-07 29.9 2.7 3.7e-07 29.6 1.9 1.2 1 0 0 1 1 1 1 Class III signal peptide Flp_Fap PF04964.9 gi|312136593|ref|YP_004003930.1| - 0.0043 16.6 1.3 0.0081 15.7 0.9 1.5 1 1 0 1 1 1 1 Flp/Fap pilin component PsbJ PF01788.12 gi|312136593|ref|YP_004003930.1| - 0.025 14.1 1.1 0.038 13.5 0.8 1.3 1 0 0 1 1 1 0 PsbJ Tad PF13400.1 gi|312136593|ref|YP_004003930.1| - 0.15 12.0 0.8 0.2 11.7 0.6 1.2 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like Pterin_bind PF00809.17 gi|312136594|ref|YP_004003931.1| - 1.8e-24 86.2 0.0 3e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|312136594|ref|YP_004003931.1| - 9.2e-12 44.7 0.0 2.1e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) DUF1359 PF07097.6 gi|312136594|ref|YP_004003931.1| - 0.018 15.0 0.9 1.1 9.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) Polysacc_deac_1 PF01522.16 gi|312136594|ref|YP_004003931.1| - 0.02 14.5 0.0 3.9 7.1 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide deacetylase DUF561 PF04481.7 gi|312136594|ref|YP_004003931.1| - 0.061 12.2 0.1 0.56 9.1 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) ATP_bind_3 PF01171.15 gi|312136595|ref|YP_004003932.1| - 8.8e-17 61.1 0.0 1.5e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|312136595|ref|YP_004003932.1| - 0.014 14.0 0.0 0.021 13.3 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.14 gi|312136595|ref|YP_004003932.1| - 0.02 14.6 0.0 0.053 13.3 0.0 1.9 2 1 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|312136595|ref|YP_004003932.1| - 0.032 13.4 2.1 0.061 12.5 0.0 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF2392 PF10288.4 gi|312136595|ref|YP_004003932.1| - 0.048 14.0 0.1 0.16 12.3 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2392) EPSP_synthase PF00275.15 gi|312136596|ref|YP_004003933.1| - 1.3e-119 399.4 0.1 1.4e-119 399.2 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tRNA-synt_1 PF00133.17 gi|312136597|ref|YP_004003934.1| - 9.7e-160 532.4 4.2 5.2e-159 530.0 2.9 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|312136597|ref|YP_004003934.1| - 5.9e-41 139.7 0.6 1.2e-40 138.7 0.4 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|312136597|ref|YP_004003934.1| - 3.4e-33 114.8 0.6 5.5e-16 58.2 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|312136597|ref|YP_004003934.1| - 2e-06 27.1 0.0 0.013 14.6 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|312136597|ref|YP_004003934.1| - 1.3e-05 24.6 0.0 5.1e-05 22.6 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|312136597|ref|YP_004003934.1| - 6.1e-05 21.8 0.0 0.0012 17.6 0.0 2.8 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|312136597|ref|YP_004003934.1| - 0.0015 17.4 0.0 0.93 8.2 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class I (R) Tetraspannin PF00335.15 gi|312136598|ref|YP_004003935.1| - 2.2 7.4 6.7 2.9 7.1 4.7 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF3687 PF12459.3 gi|312136598|ref|YP_004003935.1| - 7.3 5.9 8.9 25 4.2 0.2 3.4 3 0 0 3 3 3 0 D-Ala-teichoic acid biosynthesis protein B5 PF03484.10 gi|312136599|ref|YP_004003936.1| - 5.9e-25 86.8 8.7 1.6e-18 66.3 0.7 4.0 4 0 0 4 4 4 3 tRNA synthetase B5 domain B3_4 PF03483.12 gi|312136599|ref|YP_004003936.1| - 4.7e-13 48.9 0.1 7.9e-13 48.2 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|312136599|ref|YP_004003936.1| - 1.2e-05 24.6 0.2 2.6e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF211 PF02680.9 gi|312136599|ref|YP_004003936.1| - 1.1 9.0 6.9 0.59 9.9 0.5 3.3 2 1 1 3 3 3 0 Uncharacterized ArCR, COG1888 UPF0047 PF01894.12 gi|312136600|ref|YP_004003937.1| - 4.1e-38 129.8 0.1 4.7e-38 129.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Spore_III_AF PF09581.5 gi|312136601|ref|YP_004003938.1| - 0.21 11.4 1.8 0.16 11.8 0.2 1.6 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) LSM PF01423.17 gi|312136602|ref|YP_004003939.1| - 1.1e-23 82.5 0.2 1.4e-23 82.2 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|312136602|ref|YP_004003939.1| - 0.0017 18.2 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|312136603|ref|YP_004003940.1| - 7.5e-29 99.2 10.8 8.3e-29 99.1 7.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|312136603|ref|YP_004003940.1| - 0.0048 16.6 1.0 0.0059 16.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_6 PF14599.1 gi|312136603|ref|YP_004003940.1| - 0.025 14.3 1.0 0.033 13.9 0.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon Stc1 PF12898.2 gi|312136603|ref|YP_004003940.1| - 0.038 14.0 0.8 0.042 13.8 0.6 1.1 1 0 0 1 1 1 0 Stc1 domain FYVE_2 PF02318.11 gi|312136603|ref|YP_004003940.1| - 0.048 13.5 3.5 0.054 13.3 2.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Gag_p17 PF00540.13 gi|312136603|ref|YP_004003940.1| - 0.072 12.8 0.2 0.076 12.7 0.2 1.1 1 0 0 1 1 1 0 gag gene protein p17 (matrix protein) HypA PF01155.14 gi|312136603|ref|YP_004003940.1| - 0.085 12.5 0.6 0.09 12.4 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GCC2_GCC3 PF07699.8 gi|312136603|ref|YP_004003940.1| - 0.088 12.4 1.4 0.13 11.8 0.9 1.4 1 1 0 1 1 1 0 GCC2 and GCC3 zf-ribbon_3 PF13248.1 gi|312136603|ref|YP_004003940.1| - 0.23 10.7 3.4 0.44 9.8 2.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|312136603|ref|YP_004003940.1| - 0.33 10.5 4.0 9.6 5.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF35_N PF12172.3 gi|312136603|ref|YP_004003940.1| - 0.55 10.2 3.4 0.94 9.4 2.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|312136603|ref|YP_004003940.1| - 1.3 8.6 3.8 2.8 7.5 2.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|312136603|ref|YP_004003940.1| - 1.9 8.6 9.0 2.4 8.4 5.2 1.8 1 1 1 2 2 2 0 Ribosomal L32p protein family IncA PF04156.9 gi|312136604|ref|YP_004003941.1| - 2e-06 27.5 9.5 3.1e-06 26.9 6.6 1.3 1 0 0 1 1 1 1 IncA protein TMF_TATA_bd PF12325.3 gi|312136604|ref|YP_004003941.1| - 3.8e-06 26.6 10.3 7.2e-06 25.7 7.2 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding Toprim PF01751.17 gi|312136604|ref|YP_004003941.1| - 4.9e-06 26.4 0.2 4.9e-06 26.4 0.1 2.5 2 2 0 2 2 1 1 Toprim domain TBPIP PF07106.8 gi|312136604|ref|YP_004003941.1| - 5.1e-06 26.1 11.4 9.7e-06 25.2 7.9 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EzrA PF06160.7 gi|312136604|ref|YP_004003941.1| - 1.7e-05 23.2 9.7 3.5e-05 22.2 6.7 1.5 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FH2 PF02181.18 gi|312136604|ref|YP_004003941.1| - 3.7e-05 22.7 5.9 5.6e-05 22.1 4.1 1.3 1 0 0 1 1 1 1 Formin Homology 2 Domain ADIP PF11559.3 gi|312136604|ref|YP_004003941.1| - 4.9e-05 23.2 10.7 7.5e-05 22.6 7.4 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding APG6 PF04111.7 gi|312136604|ref|YP_004003941.1| - 6.3e-05 22.1 9.7 8.2e-05 21.7 6.7 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|312136604|ref|YP_004003941.1| - 0.00012 21.5 5.6 0.00023 20.5 3.9 1.4 1 0 0 1 1 1 1 PspA/IM30 family Fmp27_WPPW PF10359.4 gi|312136604|ref|YP_004003941.1| - 0.00012 20.6 8.1 0.00018 20.0 5.6 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|312136604|ref|YP_004003941.1| - 0.00015 20.2 5.6 0.00015 20.1 3.8 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Tropomyosin PF00261.15 gi|312136604|ref|YP_004003941.1| - 0.00016 20.8 13.1 0.00026 20.1 9.1 1.4 1 0 0 1 1 1 1 Tropomyosin V_ATPase_I PF01496.14 gi|312136604|ref|YP_004003941.1| - 0.00021 19.3 10.1 0.0003 18.8 7.0 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Tropomyosin_1 PF12718.2 gi|312136604|ref|YP_004003941.1| - 0.00025 20.9 13.3 0.00066 19.5 9.2 1.6 1 0 0 1 1 1 1 Tropomyosin like Mod_r PF07200.8 gi|312136604|ref|YP_004003941.1| - 0.00028 20.8 8.2 0.0006 19.7 5.7 1.6 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein DUF3584 PF12128.3 gi|312136604|ref|YP_004003941.1| - 0.00051 17.5 4.3 0.00053 17.4 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Myosin_tail_1 PF01576.14 gi|312136604|ref|YP_004003941.1| - 0.0011 16.8 11.9 0.0014 16.4 8.3 1.1 1 0 0 1 1 1 1 Myosin tail Filament PF00038.16 gi|312136604|ref|YP_004003941.1| - 0.0014 18.1 9.2 0.0024 17.3 6.3 1.3 1 0 0 1 1 1 1 Intermediate filament protein Toprim_4 PF13662.1 gi|312136604|ref|YP_004003941.1| - 0.0015 18.5 0.2 0.0033 17.4 0.1 1.6 1 0 0 1 1 1 1 Toprim domain AAA_13 PF13166.1 gi|312136604|ref|YP_004003941.1| - 0.0016 17.0 11.5 0.0019 16.7 8.0 1.1 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|312136604|ref|YP_004003941.1| - 0.0017 18.2 0.1 0.0037 17.0 0.1 1.6 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4472 PF14739.1 gi|312136604|ref|YP_004003941.1| - 0.0024 18.3 10.4 0.0045 17.4 7.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4472) RmuC PF02646.11 gi|312136604|ref|YP_004003941.1| - 0.0025 16.7 2.5 0.0025 16.7 1.8 1.5 2 0 0 2 2 1 1 RmuC family Atg14 PF10186.4 gi|312136604|ref|YP_004003941.1| - 0.0025 16.7 6.3 0.0032 16.4 4.4 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 OmpH PF03938.9 gi|312136604|ref|YP_004003941.1| - 0.0033 17.3 1.7 0.005 16.7 1.2 1.4 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) ATG16 PF08614.6 gi|312136604|ref|YP_004003941.1| - 0.0033 17.2 12.7 0.0048 16.7 8.8 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|312136604|ref|YP_004003941.1| - 0.0037 17.0 19.1 0.01 15.6 13.3 1.8 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DUF342 PF03961.8 gi|312136604|ref|YP_004003941.1| - 0.0037 15.7 16.6 0.0037 15.7 11.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF342) CALCOCO1 PF07888.6 gi|312136604|ref|YP_004003941.1| - 0.004 15.5 5.4 0.0058 14.9 3.7 1.3 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like GAS PF13851.1 gi|312136604|ref|YP_004003941.1| - 0.0044 16.2 24.2 0.014 14.6 15.9 2.0 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding LXG PF04740.7 gi|312136604|ref|YP_004003941.1| - 0.0044 16.8 7.5 0.0071 16.1 5.2 1.3 1 0 0 1 1 1 1 LXG domain of WXG superfamily DivIC PF04977.10 gi|312136604|ref|YP_004003941.1| - 0.0044 16.4 18.3 0.019 14.4 4.7 2.5 1 1 1 2 2 2 1 Septum formation initiator Syntaxin-6_N PF09177.6 gi|312136604|ref|YP_004003941.1| - 0.0047 17.3 8.8 0.35 11.2 1.6 2.5 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Fzo_mitofusin PF04799.8 gi|312136604|ref|YP_004003941.1| - 0.0049 16.2 4.8 0.0049 16.2 3.3 2.0 1 1 1 2 2 2 1 fzo-like conserved region DUF972 PF06156.8 gi|312136604|ref|YP_004003941.1| - 0.005 17.1 13.6 0.013 15.8 8.9 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF972) PilJ PF13675.1 gi|312136604|ref|YP_004003941.1| - 0.0063 16.8 0.5 0.023 15.0 0.4 1.9 1 1 0 1 1 1 1 Type IV pili methyl-accepting chemotaxis transducer N-term Toprim_2 PF13155.1 gi|312136604|ref|YP_004003941.1| - 0.0072 16.6 1.6 0.019 15.3 0.0 2.4 2 1 0 2 2 1 1 Toprim-like Jnk-SapK_ap_N PF09744.4 gi|312136604|ref|YP_004003941.1| - 0.0087 16.0 17.1 0.028 14.4 11.1 2.0 2 0 0 2 2 2 1 JNK_SAPK-associated protein-1 bZIP_1 PF00170.16 gi|312136604|ref|YP_004003941.1| - 0.01 15.7 19.9 0.11 12.4 6.3 2.6 1 1 1 2 2 2 0 bZIP transcription factor DUF812 PF05667.6 gi|312136604|ref|YP_004003941.1| - 0.011 14.3 7.2 0.016 13.7 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF4618 PF15397.1 gi|312136604|ref|YP_004003941.1| - 0.011 15.0 9.3 0.02 14.2 6.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) WEMBL PF05701.6 gi|312136604|ref|YP_004003941.1| - 0.012 14.0 11.6 0.015 13.7 8.0 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light COG6 PF06419.6 gi|312136604|ref|YP_004003941.1| - 0.013 13.6 6.6 0.018 13.1 4.6 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 WXG100 PF06013.7 gi|312136604|ref|YP_004003941.1| - 0.015 15.2 0.8 0.067 13.2 0.5 2.0 1 1 0 1 1 1 0 Proteins of 100 residues with WXG CENP-F_leu_zip PF10473.4 gi|312136604|ref|YP_004003941.1| - 0.017 14.9 15.8 0.017 14.9 10.9 1.8 2 0 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3810 PF12725.2 gi|312136604|ref|YP_004003941.1| - 0.018 13.9 2.5 0.029 13.2 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Mnd1 PF03962.10 gi|312136604|ref|YP_004003941.1| - 0.02 14.5 9.4 0.039 13.6 6.5 1.5 1 0 0 1 1 1 0 Mnd1 family DUF724 PF05266.9 gi|312136604|ref|YP_004003941.1| - 0.024 14.2 10.3 0.036 13.6 7.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF440 PF04269.7 gi|312136604|ref|YP_004003941.1| - 0.026 14.5 0.1 1 9.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF440 HSP70 PF00012.15 gi|312136604|ref|YP_004003941.1| - 0.028 12.3 4.0 0.034 12.0 2.8 1.2 1 0 0 1 1 1 0 Hsp70 protein BLOC1_2 PF10046.4 gi|312136604|ref|YP_004003941.1| - 0.033 14.3 15.3 0.58 10.3 3.6 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.3 gi|312136604|ref|YP_004003941.1| - 0.035 13.3 4.7 0.06 12.6 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Allexi_40kDa PF05549.6 gi|312136604|ref|YP_004003941.1| - 0.035 13.4 2.0 0.054 12.7 1.4 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein FliD_C PF07195.7 gi|312136604|ref|YP_004003941.1| - 0.042 13.1 7.4 0.082 12.1 5.0 1.7 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus GrpE PF01025.14 gi|312136604|ref|YP_004003941.1| - 0.043 13.3 17.3 0.49 9.9 11.9 2.3 1 1 0 1 1 1 0 GrpE Spectrin PF00435.16 gi|312136604|ref|YP_004003941.1| - 0.048 13.9 10.4 0.14 12.4 5.6 2.3 2 1 0 2 2 1 0 Spectrin repeat YlqD PF11068.3 gi|312136604|ref|YP_004003941.1| - 0.052 13.5 10.7 0.6 10.1 7.5 2.3 1 1 0 1 1 1 0 YlqD protein DUF1664 PF07889.7 gi|312136604|ref|YP_004003941.1| - 0.052 13.3 8.0 0.11 12.3 4.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Dor1 PF04124.7 gi|312136604|ref|YP_004003941.1| - 0.06 11.8 8.5 1.1 7.6 5.7 2.1 1 1 1 2 2 2 0 Dor1-like family Lebercilin PF15619.1 gi|312136604|ref|YP_004003941.1| - 0.061 12.7 14.1 0.11 11.8 9.8 1.4 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Snapin_Pallidin PF14712.1 gi|312136604|ref|YP_004003941.1| - 0.064 13.5 9.1 0.17 12.2 6.3 1.7 1 0 0 1 1 1 0 Snapin/Pallidin DUF4164 PF13747.1 gi|312136604|ref|YP_004003941.1| - 0.064 13.3 4.8 0.17 12.0 3.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) AATF-Che1 PF13339.1 gi|312136604|ref|YP_004003941.1| - 0.069 13.3 5.8 0.14 12.2 4.0 1.6 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor Laminin_II PF06009.7 gi|312136604|ref|YP_004003941.1| - 0.077 12.7 7.4 0.18 11.5 4.6 1.9 1 1 1 2 2 2 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|312136604|ref|YP_004003941.1| - 0.079 12.1 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein ISG65-75 PF11727.3 gi|312136604|ref|YP_004003941.1| - 0.083 11.9 8.6 0.036 13.1 4.4 1.4 2 0 0 2 2 1 0 Invariant surface glycoprotein DUF745 PF05335.8 gi|312136604|ref|YP_004003941.1| - 0.092 12.2 2.6 0.17 11.4 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Striatin PF08232.7 gi|312136604|ref|YP_004003941.1| - 0.1 12.9 11.9 0.19 12.0 8.2 1.4 1 0 0 1 1 1 0 Striatin family TelA PF05816.6 gi|312136604|ref|YP_004003941.1| - 0.11 11.1 6.8 0.17 10.5 4.7 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) AIRC PF00731.15 gi|312136604|ref|YP_004003941.1| - 0.11 11.7 1.4 0.24 10.6 1.0 1.5 1 0 0 1 1 1 0 AIR carboxylase OEP PF02321.13 gi|312136604|ref|YP_004003941.1| - 0.12 11.9 2.4 0.22 11.1 1.7 1.4 1 0 0 1 1 1 0 Outer membrane efflux protein DUF4047 PF13256.1 gi|312136604|ref|YP_004003941.1| - 0.12 12.3 7.5 0.32 10.9 5.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) DUF3552 PF12072.3 gi|312136604|ref|YP_004003941.1| - 0.12 11.5 14.5 0.27 10.4 10.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) NPV_P10 PF05531.7 gi|312136604|ref|YP_004003941.1| - 0.13 12.4 3.5 0.49 10.6 1.5 2.6 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein H-kinase_dim PF02895.9 gi|312136604|ref|YP_004003941.1| - 0.14 12.5 1.1 0.4 11.0 0.5 2.0 2 0 0 2 2 1 0 Signal transducing histidine kinase, homodimeric domain Syntaxin PF00804.20 gi|312136604|ref|YP_004003941.1| - 0.14 12.2 10.0 0.4 10.8 7.0 1.7 1 0 0 1 1 1 0 Syntaxin DUF904 PF06005.7 gi|312136604|ref|YP_004003941.1| - 0.15 12.3 22.2 0.29 11.4 12.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF904) FlxA PF14282.1 gi|312136604|ref|YP_004003941.1| - 0.15 11.9 11.5 2.9 7.8 4.7 2.4 1 1 1 2 2 2 0 FlxA-like protein T4SS PF07996.6 gi|312136604|ref|YP_004003941.1| - 0.17 11.7 3.5 0.38 10.5 2.4 1.5 1 1 0 1 1 1 0 Type IV secretion system proteins Prefoldin_2 PF01920.15 gi|312136604|ref|YP_004003941.1| - 0.18 11.5 23.2 1.7 8.4 9.3 2.6 1 1 1 2 2 2 0 Prefoldin subunit CENP-H PF05837.7 gi|312136604|ref|YP_004003941.1| - 0.21 11.7 14.1 0.52 10.5 9.8 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Fib_alpha PF08702.5 gi|312136604|ref|YP_004003941.1| - 0.23 11.5 11.8 0.17 11.9 4.9 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family EAP30 PF04157.11 gi|312136604|ref|YP_004003941.1| - 0.23 10.5 7.5 12 4.9 5.2 2.3 1 1 0 1 1 1 0 EAP30/Vps36 family Mitofilin PF09731.4 gi|312136604|ref|YP_004003941.1| - 0.24 9.9 13.6 0.062 11.9 7.5 1.4 2 0 0 2 2 1 0 Mitochondrial inner membrane protein DUF848 PF05852.6 gi|312136604|ref|YP_004003941.1| - 0.26 11.1 7.5 0.45 10.3 5.2 1.5 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) PRKCSH-like PF12999.2 gi|312136604|ref|YP_004003941.1| - 0.28 10.7 4.3 0.53 9.8 3.0 1.5 1 0 0 1 1 1 0 Glucosidase II beta subunit-like Spc24 PF08286.6 gi|312136604|ref|YP_004003941.1| - 0.29 10.8 13.9 3 7.5 9.6 2.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 RNA_pol_Rpb2_6 PF00562.23 gi|312136604|ref|YP_004003941.1| - 0.3 9.7 3.1 0.16 10.7 0.4 1.7 1 1 1 2 2 2 0 RNA polymerase Rpb2, domain 6 THOC7 PF05615.8 gi|312136604|ref|YP_004003941.1| - 0.3 11.3 12.9 0.6 10.3 8.9 1.5 1 0 0 1 1 1 0 Tho complex subunit 7 Ax_dynein_light PF10211.4 gi|312136604|ref|YP_004003941.1| - 0.3 10.8 17.8 1.7 8.4 11.5 2.1 1 1 0 1 1 1 0 Axonemal dynein light chain Myb_DNA-bind_4 PF13837.1 gi|312136604|ref|YP_004003941.1| - 0.32 11.1 13.5 21 5.3 7.7 2.7 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain COG5 PF10392.4 gi|312136604|ref|YP_004003941.1| - 0.33 10.9 8.1 1.9 8.4 1.0 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Transposase_22 PF02994.9 gi|312136604|ref|YP_004003941.1| - 0.35 9.3 15.4 0.67 8.3 10.7 1.5 1 1 0 1 1 1 0 L1 transposable element AAA_27 PF13514.1 gi|312136604|ref|YP_004003941.1| - 0.36 8.4 7.6 0.75 7.3 5.1 1.4 1 1 0 1 1 1 0 AAA domain DUF948 PF06103.6 gi|312136604|ref|YP_004003941.1| - 0.37 10.6 2.8 2.9 7.8 1.9 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) FliD_N PF02465.13 gi|312136604|ref|YP_004003941.1| - 0.45 10.9 6.2 67 3.9 4.3 2.5 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Spore_II_R PF09551.5 gi|312136604|ref|YP_004003941.1| - 0.5 10.4 5.4 0.35 10.9 1.8 1.9 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) Nup54 PF13874.1 gi|312136604|ref|YP_004003941.1| - 0.53 9.9 6.4 1.9 8.1 4.4 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Nsp1_C PF05064.8 gi|312136604|ref|YP_004003941.1| - 0.57 9.8 9.5 2.2 7.9 6.5 2.1 1 1 0 1 1 1 0 Nsp1-like C-terminal region Sipho_Gp157 PF05565.6 gi|312136604|ref|YP_004003941.1| - 0.66 9.5 18.3 27 4.3 12.6 2.5 1 1 0 1 1 1 0 Siphovirus Gp157 Uds1 PF15456.1 gi|312136604|ref|YP_004003941.1| - 0.66 9.9 8.8 2.3 8.2 5.8 2.1 1 1 0 1 1 1 0 Up-regulated During Septation Vac_Fusion PF02346.11 gi|312136604|ref|YP_004003941.1| - 0.7 9.3 9.8 0.59 9.5 1.0 3.1 2 1 0 3 3 2 0 Chordopoxvirus fusion protein DUF4140 PF13600.1 gi|312136604|ref|YP_004003941.1| - 0.71 10.3 6.5 1.9 8.9 1.5 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.17 gi|312136604|ref|YP_004003941.1| - 0.85 9.6 17.4 1.6 8.7 11.0 2.3 2 1 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.12 gi|312136604|ref|YP_004003941.1| - 1 9.0 14.8 2.4 7.8 5.0 3.1 2 1 2 4 4 3 0 Prefoldin subunit Ead_Ea22 PF13935.1 gi|312136604|ref|YP_004003941.1| - 1 9.6 8.5 1.8 8.9 5.8 1.6 1 1 0 1 1 1 0 Ead/Ea22-like protein TPR_MLP1_2 PF07926.7 gi|312136604|ref|YP_004003941.1| - 1.1 9.0 20.0 25 4.5 13.9 2.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3782 PF12644.2 gi|312136604|ref|YP_004003941.1| - 1.1 9.1 5.6 1.3 8.8 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) DMPK_coil PF08826.5 gi|312136604|ref|YP_004003941.1| - 1.1 9.1 11.8 1.1 9.1 6.4 2.3 1 1 1 2 2 2 0 DMPK coiled coil domain like Bap31 PF05529.7 gi|312136604|ref|YP_004003941.1| - 1.2 8.5 12.0 2 7.8 8.3 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Med9 PF07544.8 gi|312136604|ref|YP_004003941.1| - 1.2 8.9 9.3 2 8.2 1.3 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF585 PF04522.7 gi|312136604|ref|YP_004003941.1| - 1.2 8.4 7.0 2 7.7 4.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF585) ACCA PF03255.9 gi|312136604|ref|YP_004003941.1| - 1.3 8.5 9.5 3 7.3 6.6 1.8 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4337 PF14235.1 gi|312136604|ref|YP_004003941.1| - 1.3 8.8 13.1 0.1 12.4 2.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) EMP24_GP25L PF01105.19 gi|312136604|ref|YP_004003941.1| - 1.3 8.6 12.3 1.5 8.5 4.2 2.6 2 1 1 3 3 2 0 emp24/gp25L/p24 family/GOLD TSC22 PF01166.13 gi|312136604|ref|YP_004003941.1| - 1.4 8.9 15.1 0.82 9.6 3.9 2.8 1 1 1 2 2 2 0 TSC-22/dip/bun family Syntaxin_2 PF14523.1 gi|312136604|ref|YP_004003941.1| - 2.2 8.3 13.2 3.6 7.6 8.3 2.0 1 1 1 2 2 1 0 Syntaxin-like protein DUF3373 PF11853.3 gi|312136604|ref|YP_004003941.1| - 2.3 6.6 9.4 37 2.6 6.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) FlaC_arch PF05377.6 gi|312136604|ref|YP_004003941.1| - 2.4 8.0 18.7 0.33 10.8 5.7 3.2 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) AAA_11 PF13086.1 gi|312136604|ref|YP_004003941.1| - 2.6 7.5 10.5 3 7.3 6.5 1.7 1 1 0 1 1 1 0 AAA domain UPF0184 PF03670.8 gi|312136604|ref|YP_004003941.1| - 2.6 8.2 5.9 6.3 7.0 1.0 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) RP-C_C PF11800.3 gi|312136604|ref|YP_004003941.1| - 2.7 7.6 4.9 4.1 7.0 3.4 1.2 1 0 0 1 1 1 0 Replication protein C C-terminal region STAT_alpha PF01017.15 gi|312136604|ref|YP_004003941.1| - 2.8 7.6 10.0 5.6 6.6 6.2 2.0 2 1 0 2 2 1 0 STAT protein, all-alpha domain DUF4298 PF14131.1 gi|312136604|ref|YP_004003941.1| - 2.8 7.8 12.7 7.5 6.5 2.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) DUF1925 PF09094.6 gi|312136604|ref|YP_004003941.1| - 2.9 7.9 5.0 1.7 8.6 1.3 2.0 1 1 1 2 2 1 0 Domain of unknown function (DUF1925) AAA_23 PF13476.1 gi|312136604|ref|YP_004003941.1| - 4.2 7.6 23.1 8 6.7 16.0 1.6 1 1 0 1 1 1 0 AAA domain DUF4446 PF14584.1 gi|312136604|ref|YP_004003941.1| - 4.4 7.1 10.6 9.6 6.0 3.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) FTCD_C PF04961.7 gi|312136604|ref|YP_004003941.1| - 4.5 6.6 6.0 8.4 5.7 4.2 1.4 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase MtrG PF04210.8 gi|312136604|ref|YP_004003941.1| - 4.7 6.9 8.8 2.9 7.6 0.4 3.2 1 1 2 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G CENP-Q PF13094.1 gi|312136604|ref|YP_004003941.1| - 4.8 7.1 15.6 24 4.9 10.8 1.8 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Cep57_CLD_2 PF14197.1 gi|312136604|ref|YP_004003941.1| - 5 7.1 12.2 15 5.5 8.0 2.0 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF465 PF04325.8 gi|312136604|ref|YP_004003941.1| - 5.4 6.7 17.3 9.5 6.0 1.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF465) HALZ PF02183.13 gi|312136604|ref|YP_004003941.1| - 6.2 6.6 22.3 28 4.5 5.3 3.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper TMPIT PF07851.8 gi|312136604|ref|YP_004003941.1| - 6.9 5.6 13.3 13 4.7 9.1 1.6 1 1 0 1 1 1 0 TMPIT-like protein SRR PF07709.6 gi|312136604|ref|YP_004003941.1| - 7.3 7.2 6.3 31 5.3 0.8 3.1 2 0 0 2 2 2 0 Seven Residue Repeat DUF4407 PF14362.1 gi|312136604|ref|YP_004003941.1| - 7.4 5.4 6.0 19 4.0 4.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) GATase_6 PF13522.1 gi|312136605|ref|YP_004003942.1| - 2.1e-26 92.4 0.0 3.5e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|312136605|ref|YP_004003942.1| - 1.8e-25 89.1 0.0 2.9e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|312136605|ref|YP_004003942.1| - 4.5e-24 84.8 0.0 1e-19 70.4 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|312136605|ref|YP_004003942.1| - 1.8e-15 56.7 0.2 4e-15 55.6 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|312136605|ref|YP_004003942.1| - 2e-11 43.1 0.0 2.7e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.1 gi|312136605|ref|YP_004003942.1| - 0.11 11.8 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Peptidase_U32 PF01136.14 gi|312136606|ref|YP_004003943.1| - 1.4e-86 289.2 0.0 1.8e-86 288.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 DeoC PF01791.4 gi|312136606|ref|YP_004003943.1| - 0.038 13.2 0.0 0.076 12.2 0.0 1.5 1 0 0 1 1 1 0 DeoC/LacD family aldolase Fer4_NifH PF00142.13 gi|312136607|ref|YP_004003944.1| - 1.7e-104 348.8 3.1 1.9e-104 348.6 2.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|312136607|ref|YP_004003944.1| - 1.6e-12 47.2 0.1 2.8e-12 46.4 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|312136607|ref|YP_004003944.1| - 1.5e-05 24.1 0.5 7.6e-05 21.8 0.0 2.2 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|312136607|ref|YP_004003944.1| - 1.8e-05 24.7 0.1 0.00028 20.8 0.0 2.4 3 0 0 3 3 3 1 AAA domain ArgK PF03308.11 gi|312136607|ref|YP_004003944.1| - 0.0012 17.7 0.1 0.0018 17.0 0.1 1.4 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|312136607|ref|YP_004003944.1| - 0.0012 18.2 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|312136607|ref|YP_004003944.1| - 0.0015 18.5 0.0 0.0039 17.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|312136607|ref|YP_004003944.1| - 0.002 17.0 0.0 0.0038 16.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.22 gi|312136607|ref|YP_004003944.1| - 0.0037 17.5 0.1 0.0083 16.4 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|312136607|ref|YP_004003944.1| - 0.0097 16.0 0.0 0.041 14.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|312136607|ref|YP_004003944.1| - 0.012 15.4 0.3 0.031 14.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|312136607|ref|YP_004003944.1| - 0.022 15.5 2.2 0.061 14.1 1.4 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|312136607|ref|YP_004003944.1| - 0.025 14.7 0.0 0.073 13.2 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|312136607|ref|YP_004003944.1| - 0.037 13.9 0.4 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|312136607|ref|YP_004003944.1| - 0.043 13.3 0.1 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|312136607|ref|YP_004003944.1| - 0.047 14.1 0.1 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein NTPase_1 PF03266.10 gi|312136607|ref|YP_004003944.1| - 0.055 13.1 0.4 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.1 gi|312136607|ref|YP_004003944.1| - 0.058 13.7 0.2 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|312136607|ref|YP_004003944.1| - 0.059 13.0 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|312136607|ref|YP_004003944.1| - 0.091 12.1 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DAP3 PF10236.4 gi|312136607|ref|YP_004003944.1| - 0.093 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATP-synt_ab PF00006.20 gi|312136607|ref|YP_004003944.1| - 0.1 12.1 0.2 0.097 12.1 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|312136607|ref|YP_004003944.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TPP_enzyme_N PF02776.13 gi|312136607|ref|YP_004003944.1| - 0.18 11.2 0.0 0.58 9.6 0.0 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF123 PF01986.11 gi|312136608|ref|YP_004003945.1| - 9e-31 105.9 0.1 1.2e-30 105.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|312136608|ref|YP_004003945.1| - 0.00031 21.0 1.2 0.00031 21.0 0.8 1.8 2 0 0 2 2 2 1 GIY-YIG catalytic domain Arabinose_Isome PF02610.10 gi|312136608|ref|YP_004003945.1| - 0.12 11.3 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 L-arabinose isomerase DUF371 PF04027.8 gi|312136609|ref|YP_004003946.1| - 5e-54 181.4 0.3 5.8e-54 181.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Peptidase_U40 PF10464.4 gi|312136609|ref|YP_004003946.1| - 0.15 11.4 0.1 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase U40 DUF167 PF02594.11 gi|312136610|ref|YP_004003947.1| - 6.5e-21 74.0 0.8 8.9e-21 73.6 0.5 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Sec5 PF15469.1 gi|312136610|ref|YP_004003947.1| - 0.016 14.9 0.4 0.019 14.7 0.3 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec5 DUF111 PF01969.12 gi|312136611|ref|YP_004003948.1| - 1.2e-99 333.6 0.2 3.6e-99 332.1 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF111 QueC PF06508.8 gi|312136612|ref|YP_004003949.1| - 3.1e-69 232.4 0.0 3.6e-69 232.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|312136612|ref|YP_004003949.1| - 7.7e-12 45.0 0.2 1.1e-10 41.3 0.2 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|312136612|ref|YP_004003949.1| - 3.6e-08 33.1 0.0 8.5e-07 28.6 0.0 2.1 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|312136612|ref|YP_004003949.1| - 0.00021 20.8 0.0 0.0003 20.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|312136612|ref|YP_004003949.1| - 0.0027 16.8 0.0 0.0074 15.3 0.0 1.7 2 0 0 2 2 2 1 Arginosuccinate synthase tRNA_Me_trans PF03054.11 gi|312136612|ref|YP_004003949.1| - 0.0043 15.6 0.0 0.0075 14.8 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|312136612|ref|YP_004003949.1| - 0.008 15.1 0.0 0.095 11.5 0.0 2.1 2 0 0 2 2 2 1 NAD synthase PYC_OADA PF02436.13 gi|312136613|ref|YP_004003950.1| - 1e-65 220.8 2.3 2.6e-65 219.5 0.5 2.1 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|312136613|ref|YP_004003950.1| - 3.3e-45 154.5 0.0 4.8e-45 154.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|312136613|ref|YP_004003950.1| - 4.8e-21 74.1 7.1 1.3e-20 72.8 4.9 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|312136613|ref|YP_004003950.1| - 3.3e-15 55.4 0.8 1.9e-06 27.4 0.3 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|312136613|ref|YP_004003950.1| - 5.7e-10 38.9 1.4 0.0002 20.7 0.3 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|312136613|ref|YP_004003950.1| - 4.6e-08 32.5 2.1 0.00043 19.5 0.8 2.5 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|312136613|ref|YP_004003950.1| - 4.2e-07 30.2 0.4 0.0028 17.9 0.0 2.7 2 0 0 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|312136613|ref|YP_004003950.1| - 0.00015 21.4 0.4 0.00052 19.6 0.1 2.0 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.11 gi|312136613|ref|YP_004003950.1| - 0.0013 18.4 0.4 1.8 8.4 0.1 2.6 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain GCV_H PF01597.14 gi|312136613|ref|YP_004003950.1| - 0.0023 17.5 1.3 0.006 16.2 0.9 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein PYNP_C PF07831.8 gi|312136613|ref|YP_004003950.1| - 0.004 16.5 1.5 0.45 10.0 0.3 2.5 1 1 1 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2118 PF09891.4 gi|312136613|ref|YP_004003950.1| - 0.0043 16.7 0.8 0.0043 16.7 0.5 2.6 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2118) NQRA PF05896.6 gi|312136613|ref|YP_004003950.1| - 0.0052 16.0 2.1 0.018 14.2 1.2 1.9 1 1 1 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Peptidase_M23 PF01551.17 gi|312136613|ref|YP_004003950.1| - 0.013 15.5 0.3 0.25 11.4 0.1 2.4 1 1 1 2 2 2 0 Peptidase family M23 PTS_EIIA_1 PF00358.15 gi|312136613|ref|YP_004003950.1| - 0.12 11.9 2.2 5.4 6.5 0.2 2.8 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TPP_enzyme_C PF02775.16 gi|312136614|ref|YP_004003951.1| - 4.1e-19 68.6 0.0 9.9e-19 67.4 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|312136615|ref|YP_004003952.1| - 3e-12 46.3 0.0 3.3e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|312136615|ref|YP_004003952.1| - 6.9e-05 22.4 0.0 8.3e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DNA_PPF PF02916.10 gi|312136615|ref|YP_004003952.1| - 0.091 12.8 0.1 11 6.1 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase processivity factor Ldh_2 PF02615.9 gi|312136616|ref|YP_004003953.1| - 1.4e-133 444.7 2.5 1.6e-133 444.5 1.7 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase RHH_3 PF12651.2 gi|312136616|ref|YP_004003953.1| - 0.035 13.8 0.4 0.065 12.9 0.3 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain Rho_N PF07498.7 gi|312136616|ref|YP_004003953.1| - 0.32 10.8 3.3 0.47 10.2 1.5 2.0 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain AIRS_C PF02769.17 gi|312136617|ref|YP_004003954.1| - 3.5e-22 79.0 0.0 6.3e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|312136617|ref|YP_004003954.1| - 4.8e-18 65.1 0.7 8.3e-18 64.4 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Beta-Casp PF10996.3 gi|312136618|ref|YP_004003955.1| - 1.5e-31 108.9 0.0 3.9e-31 107.6 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|312136618|ref|YP_004003955.1| - 4.1e-23 82.0 0.5 4.3e-22 78.7 0.4 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|312136618|ref|YP_004003955.1| - 1e-11 44.4 0.0 3e-11 42.9 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|312136618|ref|YP_004003955.1| - 3.9e-09 36.3 0.1 8.8e-09 35.1 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|312136618|ref|YP_004003955.1| - 0.00043 19.8 0.4 0.0016 18.0 0.2 2.0 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|312136618|ref|YP_004003955.1| - 0.00043 19.7 11.1 0.026 14.0 1.5 3.1 1 1 1 2 2 2 2 KH domain KH_1 PF00013.24 gi|312136618|ref|YP_004003955.1| - 0.0023 17.5 2.8 0.012 15.2 0.4 2.7 1 1 1 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|312136618|ref|YP_004003955.1| - 0.0033 17.1 0.0 0.0077 15.9 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Proteasome PF00227.21 gi|312136619|ref|YP_004003956.1| - 7.6e-61 204.7 0.5 8.8e-61 204.5 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1297 PF06973.7 gi|312136620|ref|YP_004003957.1| - 9.1e-86 285.9 0.1 1.2e-85 285.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|312136620|ref|YP_004003957.1| - 1.9e-54 182.6 0.0 3.5e-54 181.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|312136620|ref|YP_004003957.1| - 2.3e-05 24.1 0.0 0.00027 20.7 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|312136620|ref|YP_004003957.1| - 0.032 13.5 0.0 0.05 12.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Met_10 PF02475.11 gi|312136621|ref|YP_004003958.1| - 8.4e-68 227.9 0.6 1.4e-67 227.2 0.4 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|312136621|ref|YP_004003958.1| - 2.7e-07 30.2 0.5 4.5e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|312136621|ref|YP_004003958.1| - 9.3e-07 28.5 0.0 1.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|312136621|ref|YP_004003958.1| - 1.5e-06 27.4 0.0 3.4e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|312136621|ref|YP_004003958.1| - 6.4e-06 25.6 0.0 1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|312136621|ref|YP_004003958.1| - 7.4e-06 25.2 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|312136621|ref|YP_004003958.1| - 9.6e-06 26.1 0.0 1.6e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|312136621|ref|YP_004003958.1| - 1.8e-05 24.7 0.0 2.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|312136621|ref|YP_004003958.1| - 0.0016 17.6 0.1 0.003 16.7 0.0 1.5 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.10 gi|312136621|ref|YP_004003958.1| - 0.0016 17.8 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|312136621|ref|YP_004003958.1| - 0.0048 15.9 0.0 0.0075 15.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|312136621|ref|YP_004003958.1| - 0.0061 15.2 0.0 0.007 15.0 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase GidB PF02527.10 gi|312136621|ref|YP_004003958.1| - 0.0097 15.0 0.2 0.074 12.1 0.0 2.1 2 1 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_21 PF05050.7 gi|312136621|ref|YP_004003958.1| - 0.033 14.1 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase FkbM domain Methyltransf_32 PF13679.1 gi|312136621|ref|YP_004003958.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Radical_SAM PF04055.16 gi|312136622|ref|YP_004003959.1| - 3e-16 60.0 0.1 7.8e-16 58.6 0.1 1.7 1 1 1 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|312136622|ref|YP_004003959.1| - 0.00021 21.0 0.0 0.00044 20.0 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain DUF2120 PF09893.4 gi|312136623|ref|YP_004003960.1| - 2.9e-39 134.3 3.8 3.4e-39 134.0 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) DNA_pol3_delta PF06144.8 gi|312136623|ref|YP_004003960.1| - 0.015 14.8 0.1 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RPAP1_N PF08621.5 gi|312136623|ref|YP_004003960.1| - 0.023 14.2 0.3 0.049 13.2 0.2 1.5 1 0 0 1 1 1 0 RPAP1-like, N-terminal BAG PF02179.11 gi|312136623|ref|YP_004003960.1| - 0.034 14.2 0.3 0.069 13.2 0.2 1.6 1 0 0 1 1 1 0 BAG domain DUF1779 PF08680.5 gi|312136623|ref|YP_004003960.1| - 0.04 13.7 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1779) Cep57_MT_bd PF06657.8 gi|312136623|ref|YP_004003960.1| - 0.94 9.4 5.1 0.37 10.7 1.6 1.6 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 GCHY-1 PF02649.9 gi|312136624|ref|YP_004003961.1| - 1.4e-86 290.2 2.7 1.6e-86 290.0 1.9 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2100 PF09873.4 gi|312136625|ref|YP_004003962.1| - 1.1e-43 149.1 19.0 1.4e-43 148.8 13.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) NadA PF02445.11 gi|312136625|ref|YP_004003962.1| - 0.019 13.7 1.1 0.024 13.4 0.3 1.5 2 0 0 2 2 2 0 Quinolinate synthetase A protein Ubiquitin_3 PF14836.1 gi|312136625|ref|YP_004003962.1| - 0.036 13.7 2.1 0.053 13.1 0.1 2.3 3 0 0 3 3 3 0 Ubiquitin-like domain UvrD-helicase PF00580.16 gi|312136625|ref|YP_004003962.1| - 0.49 9.6 6.0 0.65 9.2 4.1 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain SAS4 PF15460.1 gi|312136625|ref|YP_004003962.1| - 0.63 9.9 7.3 0.85 9.5 1.6 2.5 2 1 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 Hist_deacetyl PF00850.14 gi|312136626|ref|YP_004003963.1| - 2.1e-86 290.0 0.0 2.8e-86 289.6 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain HTH_24 PF13412.1 gi|312136627|ref|YP_004003964.1| - 8.5e-20 69.8 1.5 1.4e-19 69.1 1.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|312136627|ref|YP_004003964.1| - 4.2e-16 58.1 0.0 6.7e-16 57.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|312136627|ref|YP_004003964.1| - 1.2e-10 40.8 0.0 1.9e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|312136627|ref|YP_004003964.1| - 1.5e-08 34.1 0.0 2.5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|312136627|ref|YP_004003964.1| - 1.2e-06 27.9 0.0 1.9e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|312136627|ref|YP_004003964.1| - 1.4e-06 27.8 0.2 1.3e-05 24.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|312136627|ref|YP_004003964.1| - 2e-05 24.2 0.1 3.9e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|312136627|ref|YP_004003964.1| - 2.5e-05 23.7 0.0 4.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|312136627|ref|YP_004003964.1| - 3.6e-05 23.1 0.1 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|312136627|ref|YP_004003964.1| - 3.7e-05 23.3 0.1 7.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|312136627|ref|YP_004003964.1| - 4.4e-05 23.3 0.0 7.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|312136627|ref|YP_004003964.1| - 7.1e-05 23.1 0.8 0.0014 19.0 0.1 2.3 2 0 0 2 2 2 1 Replication protein A C terminal MarR_2 PF12802.2 gi|312136627|ref|YP_004003964.1| - 8.8e-05 22.0 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|312136627|ref|YP_004003964.1| - 0.00013 22.1 0.0 0.00037 20.7 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain FeoC PF09012.5 gi|312136627|ref|YP_004003964.1| - 0.00017 21.2 0.0 0.00045 19.8 0.0 1.6 2 0 0 2 2 1 1 FeoC like transcriptional regulator Sigma70_r4 PF04545.11 gi|312136627|ref|YP_004003964.1| - 0.0002 20.6 0.0 0.00033 19.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|312136627|ref|YP_004003964.1| - 0.00024 20.5 0.1 0.0005 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|312136627|ref|YP_004003964.1| - 0.00029 20.8 0.0 0.00047 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|312136627|ref|YP_004003964.1| - 0.00037 20.2 0.0 0.00071 19.2 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain GerE PF00196.14 gi|312136627|ref|YP_004003964.1| - 0.00064 18.9 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|312136627|ref|YP_004003964.1| - 0.00075 19.2 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|312136627|ref|YP_004003964.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|312136627|ref|YP_004003964.1| - 0.0017 18.4 0.4 0.0095 16.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|312136627|ref|YP_004003964.1| - 0.0019 17.7 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|312136627|ref|YP_004003964.1| - 0.0021 17.8 0.4 0.0047 16.7 0.2 1.7 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|312136627|ref|YP_004003964.1| - 0.0025 17.3 0.1 0.0072 15.8 0.0 1.8 2 0 0 2 2 1 1 LexA DNA binding domain RepL PF05732.6 gi|312136627|ref|YP_004003964.1| - 0.0035 16.5 0.6 0.0035 16.5 0.4 1.6 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) DUF2042 PF09743.4 gi|312136627|ref|YP_004003964.1| - 0.0059 15.9 0.2 0.01 15.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2042) HTH_Tnp_ISL3 PF13542.1 gi|312136627|ref|YP_004003964.1| - 0.0086 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 DUF977 PF06163.6 gi|312136627|ref|YP_004003964.1| - 0.01 15.6 0.0 0.066 12.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF977) Trp_repressor PF01371.14 gi|312136627|ref|YP_004003964.1| - 0.011 15.6 0.2 0.072 13.0 0.0 2.1 2 0 0 2 2 2 0 Trp repressor protein SICA_C PF12879.2 gi|312136627|ref|YP_004003964.1| - 0.026 14.4 0.1 0.053 13.3 0.1 1.5 1 0 0 1 1 1 0 SICA C-terminal inner membrane domain EAP30 PF04157.11 gi|312136627|ref|YP_004003964.1| - 0.026 13.6 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HxlR PF01638.12 gi|312136627|ref|YP_004003964.1| - 0.032 13.8 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF742 PF05331.6 gi|312136627|ref|YP_004003964.1| - 0.034 13.7 0.0 0.064 12.8 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF742) HIGH_NTase1 PF05636.6 gi|312136627|ref|YP_004003964.1| - 0.036 13.1 0.3 0.04 12.9 0.2 1.1 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase HTH_9 PF08221.6 gi|312136627|ref|YP_004003964.1| - 0.04 13.7 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain NdhM PF10664.4 gi|312136627|ref|YP_004003964.1| - 0.055 13.3 0.4 4.7 7.1 0.1 2.5 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M DUF4423 PF14394.1 gi|312136627|ref|YP_004003964.1| - 0.055 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|312136627|ref|YP_004003964.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PAX PF00292.13 gi|312136627|ref|YP_004003964.1| - 0.064 12.9 0.0 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 'Paired box' domain DUF2250 PF10007.4 gi|312136627|ref|YP_004003964.1| - 0.076 12.9 0.6 0.13 12.1 0.1 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) DDRGK PF09756.4 gi|312136627|ref|YP_004003964.1| - 0.084 12.2 1.4 0.15 11.4 0.1 1.9 2 0 0 2 2 2 0 DDRGK domain DUF2089 PF09862.4 gi|312136627|ref|YP_004003964.1| - 0.094 12.5 1.5 0.68 9.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_Tnp_Tc3_2 PF01498.13 gi|312136627|ref|YP_004003964.1| - 0.13 12.3 0.1 0.29 11.2 0.0 1.6 2 0 0 2 2 1 0 Transposase Ribosomal_S25 PF03297.10 gi|312136627|ref|YP_004003964.1| - 0.14 12.2 1.3 0.17 11.9 0.2 1.6 2 0 0 2 2 1 0 S25 ribosomal protein NUMOD1 PF07453.8 gi|312136627|ref|YP_004003964.1| - 1.2 9.0 3.9 1.5 8.7 0.0 3.0 3 0 0 3 3 2 0 NUMOD1 domain HypA PF01155.14 gi|312136628|ref|YP_004003965.1| - 1.8e-33 114.5 3.5 2e-33 114.4 2.4 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Elf1 PF05129.8 gi|312136628|ref|YP_004003965.1| - 0.023 14.4 4.6 0.024 14.2 2.5 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|312136628|ref|YP_004003965.1| - 0.11 12.8 6.1 3.5 8.0 4.9 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|312136628|ref|YP_004003965.1| - 1.2 9.0 6.4 0.39 10.6 0.7 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-HYPF PF07503.7 gi|312136628|ref|YP_004003965.1| - 1.6 8.2 8.3 1 8.8 0.5 2.3 2 0 0 2 2 2 0 HypF finger cobW PF02492.14 gi|312136629|ref|YP_004003966.1| - 5.2e-39 133.5 3.5 7.5e-39 133.0 2.4 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|312136629|ref|YP_004003966.1| - 2.5e-11 42.8 3.2 2.1e-07 30.0 1.1 2.1 2 0 0 2 2 2 2 ArgK protein GTP_EFTU PF00009.22 gi|312136629|ref|YP_004003966.1| - 7.4e-05 22.2 2.3 0.044 13.2 0.3 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Arch_ATPase PF01637.13 gi|312136629|ref|YP_004003966.1| - 0.0002 21.1 0.8 0.00074 19.2 0.6 1.9 1 1 0 1 1 1 1 Archaeal ATPase IMPDH PF00478.20 gi|312136629|ref|YP_004003966.1| - 0.00028 19.9 5.9 0.076 11.8 0.9 2.0 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Zeta_toxin PF06414.7 gi|312136629|ref|YP_004003966.1| - 0.0011 18.1 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.17 gi|312136629|ref|YP_004003966.1| - 0.0014 18.0 0.2 0.0034 16.8 0.1 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain KAP_NTPase PF07693.9 gi|312136629|ref|YP_004003966.1| - 0.0015 17.6 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 KAP family P-loop domain NTPase_1 PF03266.10 gi|312136629|ref|YP_004003966.1| - 0.0017 18.0 1.9 0.013 15.2 1.3 2.1 1 1 0 1 1 1 1 NTPase Arf PF00025.16 gi|312136629|ref|YP_004003966.1| - 0.002 17.4 0.7 0.17 11.1 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family Miro PF08477.8 gi|312136629|ref|YP_004003966.1| - 0.002 18.6 1.0 0.037 14.5 0.5 2.5 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|312136629|ref|YP_004003966.1| - 0.004 16.4 2.0 0.35 10.1 0.3 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B AAA_16 PF13191.1 gi|312136629|ref|YP_004003966.1| - 0.0061 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|312136629|ref|YP_004003966.1| - 0.0085 15.6 0.2 0.64 9.5 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|312136629|ref|YP_004003966.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|312136629|ref|YP_004003966.1| - 0.014 14.3 0.2 0.022 13.6 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|312136629|ref|YP_004003966.1| - 0.015 14.9 1.3 0.032 13.9 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|312136629|ref|YP_004003966.1| - 0.03 12.9 0.0 0.042 12.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PduV-EutP PF10662.4 gi|312136629|ref|YP_004003966.1| - 0.035 13.5 4.1 4 6.9 0.4 2.9 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Pox_A32 PF04665.7 gi|312136629|ref|YP_004003966.1| - 0.049 12.9 0.0 0.089 12.0 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_14 PF13173.1 gi|312136629|ref|YP_004003966.1| - 0.051 13.4 0.1 0.095 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|312136629|ref|YP_004003966.1| - 0.059 12.5 0.2 0.47 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|312136629|ref|YP_004003966.1| - 0.064 13.5 0.3 0.13 12.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|312136629|ref|YP_004003966.1| - 0.073 13.2 1.2 0.16 12.1 0.2 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|312136629|ref|YP_004003966.1| - 0.086 12.3 0.1 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|312136629|ref|YP_004003966.1| - 0.14 12.9 0.3 0.35 11.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|312136629|ref|YP_004003966.1| - 0.15 11.6 0.1 0.36 10.4 0.1 1.6 1 0 0 1 1 1 0 NACHT domain LPP PF04728.8 gi|312136629|ref|YP_004003966.1| - 0.19 11.5 2.8 0.61 9.9 0.1 2.6 3 0 0 3 3 3 0 Lipoprotein leucine-zipper DUF354 PF04007.7 gi|312136630|ref|YP_004003967.1| - 4.3e-139 463.0 5.5 4.8e-139 462.8 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_3 PF13528.1 gi|312136630|ref|YP_004003967.1| - 0.0003 20.0 0.0 0.26 10.4 0.0 2.6 2 1 1 3 3 3 2 Glycosyl transferase family 1 Glyco_trans_4_2 PF13477.1 gi|312136630|ref|YP_004003967.1| - 0.0009 19.0 0.4 0.0025 17.6 0.3 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like LpxB PF02684.10 gi|312136630|ref|YP_004003967.1| - 0.0051 15.4 0.0 0.0099 14.5 0.0 1.5 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase Epimerase_2 PF02350.14 gi|312136630|ref|YP_004003967.1| - 0.018 13.8 0.0 0.038 12.7 0.0 1.5 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Endonuclease_5 PF04493.9 gi|312136631|ref|YP_004003968.1| - 3.6e-57 193.0 0.8 5.2e-57 192.5 0.6 1.2 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|312136631|ref|YP_004003968.1| - 0.00013 21.1 0.1 0.00031 19.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF99 Pyr_redox_2 PF07992.9 gi|312136632|ref|YP_004003969.1| - 1e-39 136.5 5.8 1.2e-37 129.7 4.0 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|312136632|ref|YP_004003969.1| - 3.5e-23 81.8 7.9 2e-18 66.5 0.5 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|312136632|ref|YP_004003969.1| - 3.8e-16 59.0 0.1 1.9e-15 56.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|312136632|ref|YP_004003969.1| - 4.8e-12 46.3 0.1 0.00014 21.9 0.0 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|312136632|ref|YP_004003969.1| - 1.3e-08 34.1 6.0 0.00013 20.9 0.1 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|312136632|ref|YP_004003969.1| - 4.2e-07 28.7 2.0 0.13 10.6 0.3 3.7 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|312136632|ref|YP_004003969.1| - 1.2e-06 28.4 0.1 0.0058 16.6 0.0 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|312136632|ref|YP_004003969.1| - 3.2e-06 26.2 0.0 0.0042 15.9 0.0 3.2 1 1 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.1 gi|312136632|ref|YP_004003969.1| - 0.0012 17.8 0.1 0.087 11.7 0.0 3.1 2 1 1 4 4 4 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|312136632|ref|YP_004003969.1| - 0.0025 17.5 0.9 3.6 7.3 0.0 3.7 3 1 1 4 4 4 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|312136632|ref|YP_004003969.1| - 0.012 14.5 1.1 0.85 8.4 0.0 3.0 3 0 0 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|312136632|ref|YP_004003969.1| - 0.034 12.7 0.1 1.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.13 gi|312136632|ref|YP_004003969.1| - 0.052 13.5 1.1 2 8.4 0.1 2.8 2 1 0 2 2 2 0 TrkA-N domain Amino_oxidase PF01593.19 gi|312136632|ref|YP_004003969.1| - 0.16 11.0 0.1 4.3 6.2 0.1 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|312136632|ref|YP_004003969.1| - 0.53 9.0 12.7 4.8 5.9 0.0 4.3 3 2 2 5 5 5 0 Glucose inhibited division protein A Peptidase_M50 PF02163.17 gi|312136633|ref|YP_004003970.1| - 4.6e-27 94.2 3.0 4.6e-27 94.2 2.1 2.0 2 0 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|312136633|ref|YP_004003970.1| - 5.9e-07 29.2 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|312136633|ref|YP_004003970.1| - 7.1e-05 22.9 0.0 0.00022 21.3 0.0 1.8 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|312136633|ref|YP_004003970.1| - 0.049 13.5 0.0 0.095 12.5 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain DUF4231 PF14015.1 gi|312136633|ref|YP_004003970.1| - 0.078 12.9 0.4 0.38 10.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Use1 PF09753.4 gi|312136633|ref|YP_004003970.1| - 0.27 10.6 1.3 0.53 9.6 0.9 1.4 1 0 0 1 1 1 0 Membrane fusion protein Use1 MoeA_N PF03453.12 gi|312136634|ref|YP_004003971.1| - 4e-52 175.8 0.1 7.9e-52 174.8 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|312136634|ref|YP_004003971.1| - 6e-26 90.5 0.1 9.4e-26 89.9 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|312136634|ref|YP_004003971.1| - 2e-19 69.2 0.0 6e-19 67.7 0.0 1.9 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) ABC_tran PF00005.22 gi|312136635|ref|YP_004003972.1| - 1e-33 116.5 0.0 2e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136635|ref|YP_004003972.1| - 5e-15 56.2 0.6 2.7e-07 30.8 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|312136635|ref|YP_004003972.1| - 3.2e-05 23.1 2.7 0.023 13.7 0.2 2.5 2 1 1 3 3 3 2 AAA ATPase domain DUF4162 PF13732.1 gi|312136635|ref|YP_004003972.1| - 0.00024 21.5 2.6 0.00055 20.3 1.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|312136635|ref|YP_004003972.1| - 0.00057 20.2 6.8 0.0021 18.4 4.6 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|312136635|ref|YP_004003972.1| - 0.0017 17.1 0.0 0.0027 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|312136635|ref|YP_004003972.1| - 0.0022 17.4 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|312136635|ref|YP_004003972.1| - 0.014 15.0 0.0 0.043 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|312136635|ref|YP_004003972.1| - 0.016 15.9 0.1 0.037 14.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|312136635|ref|YP_004003972.1| - 0.022 13.9 1.4 0.8 8.8 0.0 2.6 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain GTP_EFTU_D2 PF03144.20 gi|312136635|ref|YP_004003972.1| - 0.026 14.6 1.0 0.16 12.0 0.2 2.7 2 1 0 2 2 2 0 Elongation factor Tu domain 2 Arch_ATPase PF01637.13 gi|312136635|ref|YP_004003972.1| - 0.03 14.0 1.5 0.031 13.9 0.1 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA PF00004.24 gi|312136635|ref|YP_004003972.1| - 0.037 14.2 0.7 0.26 11.4 0.2 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|312136635|ref|YP_004003972.1| - 0.037 13.7 0.1 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|312136635|ref|YP_004003972.1| - 0.04 13.6 0.3 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|312136635|ref|YP_004003972.1| - 0.053 12.9 0.1 0.97 8.7 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.1 gi|312136635|ref|YP_004003972.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|312136635|ref|YP_004003972.1| - 0.092 12.8 1.1 0.49 10.5 0.7 2.3 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|312136636|ref|YP_004003973.1| - 1.1e-17 63.8 4.3 2.3e-17 62.7 3.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|312136636|ref|YP_004003973.1| - 2e-14 53.3 40.6 1.5e-13 50.5 28.1 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|312136636|ref|YP_004003973.1| - 7e-11 41.7 33.7 9.6e-11 41.2 23.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|312136636|ref|YP_004003973.1| - 0.00076 18.8 34.9 0.00076 18.8 24.2 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|312136637|ref|YP_004003974.1| - 1.6e-25 89.9 29.0 2e-25 89.5 20.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|312136637|ref|YP_004003974.1| - 1.2e-14 53.8 7.2 2.1e-14 53.0 5.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|312136637|ref|YP_004003974.1| - 6.8e-07 28.6 20.1 6.8e-07 28.6 13.9 2.4 2 1 0 2 2 2 1 ABC-2 type transporter MacB_PCD PF12704.2 gi|312136637|ref|YP_004003974.1| - 4.9 6.6 5.4 0.32 10.5 0.1 1.7 2 0 0 2 2 2 0 MacB-like periplasmic core domain Pribosyltran_N PF13793.1 gi|312136638|ref|YP_004003975.1| - 1.1e-32 112.1 0.3 3e-28 97.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|312136638|ref|YP_004003975.1| - 5.5e-16 58.4 2.3 2.4e-15 56.3 0.5 2.7 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|312136638|ref|YP_004003975.1| - 9.9e-09 35.2 4.1 8.4e-08 32.1 0.4 2.7 2 1 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|312136638|ref|YP_004003975.1| - 0.00011 21.5 0.1 0.0006 19.1 0.1 1.9 1 1 1 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|312136638|ref|YP_004003975.1| - 0.00015 21.0 0.0 0.00025 20.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_3 PF15610.1 gi|312136638|ref|YP_004003975.1| - 0.037 12.9 0.1 0.056 12.3 0.1 1.3 1 0 0 1 1 1 0 PRTase ComF-like AAA_32 PF13654.1 gi|312136639|ref|YP_004003976.1| - 2.7e-33 115.4 0.4 1.9e-23 82.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain Lon_C PF05362.8 gi|312136639|ref|YP_004003976.1| - 4.9e-33 114.1 1.8 9e-33 113.3 1.3 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Sigma54_activat PF00158.21 gi|312136639|ref|YP_004003976.1| - 5.4e-19 68.2 0.1 5.1e-10 39.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|312136639|ref|YP_004003976.1| - 6.1e-19 68.0 0.1 4.4e-10 39.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|312136639|ref|YP_004003976.1| - 4.2e-13 48.8 0.5 0.00047 19.0 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|312136639|ref|YP_004003976.1| - 1.3e-12 47.5 0.0 2.6e-05 23.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|312136639|ref|YP_004003976.1| - 5.3e-10 39.4 0.3 1.8e-05 24.8 0.0 3.3 2 1 1 3 3 3 2 Sigma-54 interaction domain ChlI PF13541.1 gi|312136639|ref|YP_004003976.1| - 5.5e-10 38.8 0.4 1.7e-09 37.2 0.3 1.9 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|312136639|ref|YP_004003976.1| - 6.5e-08 32.8 0.0 0.0043 17.2 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|312136639|ref|YP_004003976.1| - 3.2e-07 30.5 0.0 0.0003 20.9 0.0 2.7 3 0 0 3 3 2 1 AAA domain RuvB_N PF05496.7 gi|312136639|ref|YP_004003976.1| - 1.7e-06 27.2 0.1 0.016 14.2 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|312136639|ref|YP_004003976.1| - 2.6e-05 23.8 0.0 0.019 14.5 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|312136639|ref|YP_004003976.1| - 3.2e-05 23.9 0.0 0.00012 22.0 0.0 2.0 2 0 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|312136639|ref|YP_004003976.1| - 7.8e-05 22.1 0.0 0.0006 19.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|312136639|ref|YP_004003976.1| - 0.00018 21.1 0.0 0.0011 18.6 0.0 2.4 2 0 0 2 2 1 1 Part of AAA domain PhoH PF02562.11 gi|312136639|ref|YP_004003976.1| - 0.00019 20.7 0.1 0.0011 18.1 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein AAA_18 PF13238.1 gi|312136639|ref|YP_004003976.1| - 0.00022 21.5 0.0 0.00068 19.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|312136639|ref|YP_004003976.1| - 0.00031 20.4 0.0 0.0035 17.0 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|312136639|ref|YP_004003976.1| - 0.00033 20.3 0.8 0.0067 16.0 0.5 2.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|312136639|ref|YP_004003976.1| - 0.00074 18.5 0.0 0.0035 16.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein Parvo_NS1 PF01057.12 gi|312136639|ref|YP_004003976.1| - 0.0023 16.8 0.0 0.0046 15.8 0.0 1.4 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_29 PF13555.1 gi|312136639|ref|YP_004003976.1| - 0.0023 17.4 0.0 0.012 15.0 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_2 PF07724.9 gi|312136639|ref|YP_004003976.1| - 0.0033 17.3 0.0 3.7 7.4 0.0 3.2 3 0 0 3 3 3 1 AAA domain (Cdc48 subfamily) AAA_PrkA PF08298.6 gi|312136639|ref|YP_004003976.1| - 0.0033 16.1 0.2 1.5 7.4 0.0 2.6 2 0 0 2 2 2 2 PrkA AAA domain TraL PF07178.6 gi|312136639|ref|YP_004003976.1| - 0.0074 16.2 2.2 0.016 15.1 1.6 1.5 1 0 0 1 1 1 1 TraL protein DUF815 PF05673.8 gi|312136639|ref|YP_004003976.1| - 0.011 14.7 0.0 0.024 13.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.13 gi|312136639|ref|YP_004003976.1| - 0.013 14.9 0.1 0.065 12.7 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family ResIII PF04851.10 gi|312136639|ref|YP_004003976.1| - 0.013 15.3 0.0 0.065 13.0 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|312136639|ref|YP_004003976.1| - 0.016 15.5 0.0 0.046 14.0 0.0 1.9 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|312136639|ref|YP_004003976.1| - 0.023 14.0 0.0 0.059 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|312136639|ref|YP_004003976.1| - 0.027 13.5 0.4 0.11 11.5 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.2 gi|312136639|ref|YP_004003976.1| - 0.031 13.7 0.1 0.41 10.0 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|312136639|ref|YP_004003976.1| - 0.038 12.9 0.2 0.15 10.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.4 gi|312136639|ref|YP_004003976.1| - 0.038 12.9 0.0 0.097 11.5 0.0 1.6 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.17 gi|312136639|ref|YP_004003976.1| - 0.074 13.2 0.0 0.28 11.3 0.0 2.1 2 0 0 2 2 1 0 RNA helicase AAA_17 PF13207.1 gi|312136639|ref|YP_004003976.1| - 0.082 13.7 0.0 0.55 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|312136639|ref|YP_004003976.1| - 0.082 12.7 0.0 0.41 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Cyclin_C PF02984.14 gi|312136639|ref|YP_004003976.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Cyclin, C-terminal domain DUF258 PF03193.11 gi|312136639|ref|YP_004003976.1| - 0.12 11.5 0.0 0.33 10.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF258 GATase_3 PF07685.9 gi|312136640|ref|YP_004003977.1| - 3e-39 134.1 0.3 5e-39 133.4 0.2 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|312136640|ref|YP_004003977.1| - 7e-29 100.6 0.1 1.2e-28 99.8 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|312136640|ref|YP_004003977.1| - 2.9e-21 76.0 0.1 7.9e-21 74.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|312136640|ref|YP_004003977.1| - 1.4e-05 24.8 0.0 0.073 12.7 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.14 gi|312136640|ref|YP_004003977.1| - 3.6e-05 23.4 0.0 8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|312136640|ref|YP_004003977.1| - 0.0014 18.0 0.0 0.019 14.4 0.0 2.5 2 0 0 2 2 2 1 Glutamine amidotransferase class-I DUF3725 PF12523.3 gi|312136640|ref|YP_004003977.1| - 0.051 13.6 0.1 1.9 8.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) GATase_5 PF13507.1 gi|312136640|ref|YP_004003977.1| - 0.052 12.4 0.0 0.23 10.3 0.0 2.0 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Cupin_2 PF07883.6 gi|312136641|ref|YP_004003978.1| - 1.3e-17 63.0 0.0 2.3e-17 62.2 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.17 gi|312136641|ref|YP_004003978.1| - 4.2e-10 39.3 0.1 6.2e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|312136641|ref|YP_004003978.1| - 4.7e-09 36.1 0.1 7.3e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.13 gi|312136641|ref|YP_004003978.1| - 4.4e-05 23.1 0.0 7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase HTH_31 PF13560.1 gi|312136641|ref|YP_004003978.1| - 0.00087 19.4 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-C_C PF11699.3 gi|312136641|ref|YP_004003978.1| - 0.0032 17.4 0.1 0.0064 16.4 0.0 1.5 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding PF02311.14 gi|312136641|ref|YP_004003978.1| - 0.0084 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|312136641|ref|YP_004003978.1| - 0.0092 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|312136641|ref|YP_004003978.1| - 0.021 14.3 0.1 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ AMP-binding PF00501.23 gi|312136642|ref|YP_004003979.1| - 2.7e-88 296.1 0.0 3.4e-88 295.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|312136642|ref|YP_004003979.1| - 1.2e-18 67.7 1.2 1.7e-18 67.2 0.2 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.6 gi|312136642|ref|YP_004003979.1| - 0.054 13.1 0.3 0.25 11.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) POR_N PF01855.14 gi|312136643|ref|YP_004003980.1| - 1.6e-63 214.3 0.0 2.1e-63 213.9 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|312136643|ref|YP_004003980.1| - 5e-06 26.1 0.1 8.5e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|312136643|ref|YP_004003980.1| - 0.00022 21.1 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain IMPDH PF00478.20 gi|312136643|ref|YP_004003980.1| - 0.051 12.4 0.2 0.1 11.4 0.0 1.6 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ELFV_dehydrog PF00208.16 gi|312136643|ref|YP_004003980.1| - 0.078 12.5 0.7 0.49 9.9 0.5 2.0 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Transket_pyr PF02779.19 gi|312136643|ref|YP_004003980.1| - 0.079 12.4 0.2 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain PhoU PF01895.14 gi|312136643|ref|YP_004003980.1| - 0.52 10.7 2.7 1.9 9.0 0.4 2.5 3 0 0 3 3 3 0 PhoU domain FlaC_arch PF05377.6 gi|312136643|ref|YP_004003980.1| - 1.6 8.7 5.1 0.8 9.6 0.5 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) POR PF01558.13 gi|312136644|ref|YP_004003981.1| - 1.3e-36 126.0 0.0 2.3e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|312136644|ref|YP_004003981.1| - 1.7e-21 76.3 0.1 3.3e-21 75.4 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF128 PF01995.11 gi|312136645|ref|YP_004003982.1| - 1.1e-150 499.1 13.7 2e-80 269.1 2.2 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|312136645|ref|YP_004003982.1| - 1e-27 95.6 4.5 2.3e-27 94.4 3.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|312136645|ref|YP_004003982.1| - 0.00017 21.5 2.1 0.0014 18.6 1.0 2.5 2 0 0 2 2 2 1 HTH-like domain HTH_20 PF12840.2 gi|312136645|ref|YP_004003982.1| - 0.021 14.6 0.1 0.056 13.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.14 gi|312136645|ref|YP_004003982.1| - 0.028 14.3 0.2 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 Ferric uptake regulator family Glu-tRNAGln PF02686.10 gi|312136646|ref|YP_004003983.1| - 8.2e-08 31.9 0.2 1e-07 31.6 0.1 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF1054 PF06335.7 gi|312136646|ref|YP_004003983.1| - 0.1 12.2 0.2 0.11 12.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1054) Homoserine_dh PF00742.14 gi|312136647|ref|YP_004003984.1| - 1.1e-57 194.5 0.4 2.9e-57 193.2 0.1 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|312136647|ref|YP_004003984.1| - 3.5e-10 40.3 0.1 9e-10 38.9 0.0 1.7 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|312136647|ref|YP_004003984.1| - 6.3e-08 32.5 0.6 1.7e-07 31.1 0.4 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PhosphMutase PF10143.4 gi|312136648|ref|YP_004003985.1| - 2.8e-59 199.6 0.0 3.9e-59 199.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|312136648|ref|YP_004003985.1| - 1.4e-55 188.3 0.1 1.7e-55 188.1 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|312136648|ref|YP_004003985.1| - 0.0045 16.3 0.2 0.025 13.9 0.1 1.9 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4304 PF14137.1 gi|312136648|ref|YP_004003985.1| - 0.054 13.6 0.2 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4304) CTP_synth_N PF06418.9 gi|312136649|ref|YP_004003986.1| - 5.6e-130 432.3 0.1 7.8e-130 431.9 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|312136649|ref|YP_004003986.1| - 1.3e-55 187.8 0.0 2e-55 187.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|312136649|ref|YP_004003986.1| - 2.9e-14 53.0 0.0 4.5e-13 49.1 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|312136649|ref|YP_004003986.1| - 2.2e-06 27.2 0.1 1.3e-05 24.6 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.19 gi|312136649|ref|YP_004003986.1| - 0.003 17.0 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.14 gi|312136649|ref|YP_004003986.1| - 0.021 14.4 0.0 5.6 6.5 0.0 2.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|312136649|ref|YP_004003986.1| - 0.039 13.5 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Arc_PepC PF06819.6 gi|312136650|ref|YP_004003987.1| - 1.5e-17 63.5 3.5 3.3e-17 62.3 2.4 1.6 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.13 gi|312136650|ref|YP_004003987.1| - 5.6e-11 42.5 9.9 5.6e-11 42.5 6.8 3.0 3 1 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.6 gi|312136650|ref|YP_004003987.1| - 0.0028 18.0 3.0 0.003 17.9 0.0 2.6 3 0 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II Flavi_DEAD PF07652.9 gi|312136650|ref|YP_004003987.1| - 0.029 14.1 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Flavivirus DEAD domain IncA PF04156.9 gi|312136650|ref|YP_004003987.1| - 0.45 10.0 0.0 0.45 10.0 0.0 2.4 2 0 0 2 2 2 0 IncA protein Rubrerythrin PF02915.12 gi|312136651|ref|YP_004003988.1| - 5e-18 65.7 7.5 3.1e-17 63.1 5.2 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|312136651|ref|YP_004003988.1| - 3.2e-08 33.4 5.5 5.9e-07 29.3 3.8 2.1 1 1 0 1 1 1 1 Ferritin-like domain Mob_Pre PF01076.14 gi|312136651|ref|YP_004003988.1| - 0.015 14.9 0.4 0.021 14.4 0.3 1.3 1 0 0 1 1 1 0 Plasmid recombination enzyme Ferritin_2 PF13668.1 gi|312136651|ref|YP_004003988.1| - 0.015 15.2 0.6 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Ferritin-like domain Lactamase_B PF00753.22 gi|312136652|ref|YP_004003989.1| - 1e-21 77.5 0.1 2.2e-21 76.3 0.0 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|312136652|ref|YP_004003989.1| - 4.3e-12 46.2 0.0 6.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|312136652|ref|YP_004003989.1| - 0.015 14.8 0.1 0.025 14.0 0.1 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PGM_PMM_I PF02878.11 gi|312136652|ref|YP_004003989.1| - 0.037 13.4 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GAF_3 PF13492.1 gi|312136653|ref|YP_004003990.1| - 1.5e-13 50.9 0.0 1.8e-13 50.6 0.0 1.0 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|312136653|ref|YP_004003990.1| - 1.7e-11 44.7 0.0 2e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|312136653|ref|YP_004003990.1| - 4.9e-08 33.2 0.0 6.1e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 GAF domain Vps39_2 PF10367.4 gi|312136654|ref|YP_004003991.1| - 0.055 13.6 0.1 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 UTP15_C PF09384.5 gi|312136654|ref|YP_004003991.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 UTP15 C terminal Peptidase_U32 PF01136.14 gi|312136655|ref|YP_004003992.1| - 1.2e-27 96.3 0.1 6.5e-27 93.9 0.1 1.9 1 1 0 1 1 1 1 Peptidase family U32 DUF1884 PF08967.5 gi|312136655|ref|YP_004003992.1| - 0.003 17.5 0.0 0.0092 16.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) Radical_SAM PF04055.16 gi|312136655|ref|YP_004003992.1| - 0.0091 16.1 0.1 1.6 8.8 0.0 2.9 1 1 0 2 2 2 1 Radical SAM superfamily Glyco_hydro_97 PF10566.4 gi|312136655|ref|YP_004003992.1| - 0.025 13.6 0.0 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 Glycoside hydrolase 97 NanE PF04131.9 gi|312136655|ref|YP_004003992.1| - 0.053 12.4 0.0 0.19 10.6 0.0 1.9 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Thymidylate_kin PF02223.12 gi|312136656|ref|YP_004003993.1| - 4.3e-36 124.0 0.1 4.9e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.14 gi|312136656|ref|YP_004003993.1| - 1.6e-07 31.3 1.8 8.1e-06 25.8 1.3 2.1 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|312136656|ref|YP_004003993.1| - 1.7e-07 31.5 1.2 3.7e-07 30.5 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312136656|ref|YP_004003993.1| - 6.9e-06 26.8 0.7 2e-05 25.3 0.4 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|312136656|ref|YP_004003993.1| - 0.0002 21.1 0.0 0.00039 20.1 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|312136656|ref|YP_004003993.1| - 0.00041 20.2 0.0 0.00093 19.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|312136656|ref|YP_004003993.1| - 0.00056 19.9 0.0 0.00072 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|312136656|ref|YP_004003993.1| - 0.00061 19.4 0.1 0.056 13.0 0.0 2.7 2 1 1 3 3 3 1 Adenylylsulphate kinase SKI PF01202.17 gi|312136656|ref|YP_004003993.1| - 0.00074 19.4 0.3 0.29 10.9 0.0 2.3 2 0 0 2 2 2 2 Shikimate kinase SRP54 PF00448.17 gi|312136656|ref|YP_004003993.1| - 0.0013 18.2 0.0 0.0029 17.0 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|312136656|ref|YP_004003993.1| - 0.005 16.3 0.1 0.013 15.0 0.1 1.8 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Mur_ligase_M PF08245.7 gi|312136656|ref|YP_004003993.1| - 0.0083 16.1 0.3 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 Mur ligase middle domain AAA_30 PF13604.1 gi|312136656|ref|YP_004003993.1| - 0.012 15.2 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|312136656|ref|YP_004003993.1| - 0.021 14.0 0.5 0.66 9.1 0.0 2.1 1 1 1 2 2 2 0 Chromatin associated protein KTI12 PPK2 PF03976.9 gi|312136656|ref|YP_004003993.1| - 0.024 13.9 0.0 0.1 11.8 0.0 2.0 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) AAA_11 PF13086.1 gi|312136656|ref|YP_004003993.1| - 0.028 14.0 0.0 0.047 13.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|312136656|ref|YP_004003993.1| - 0.039 13.6 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA PF00004.24 gi|312136656|ref|YP_004003993.1| - 0.058 13.6 0.7 0.3 11.2 0.1 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4058 PF13267.1 gi|312136656|ref|YP_004003993.1| - 0.059 12.4 0.2 0.51 9.4 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4058) CbiA PF01656.18 gi|312136656|ref|YP_004003993.1| - 0.062 12.7 0.2 0.09 12.1 0.1 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.9 gi|312136656|ref|YP_004003993.1| - 0.081 11.8 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_31 PF13614.1 gi|312136656|ref|YP_004003993.1| - 0.089 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|312136656|ref|YP_004003993.1| - 0.092 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain CobN-Mg_chel PF02514.11 gi|312136657|ref|YP_004003994.1| - 3.5e-236 786.3 0.0 3e-142 475.3 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase TatD_DNase PF01026.16 gi|312136658|ref|YP_004003995.1| - 1.8e-34 119.1 0.1 2e-34 118.9 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|312136658|ref|YP_004003995.1| - 9.4e-05 22.0 0.0 0.027 14.0 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase PTE PF02126.13 gi|312136658|ref|YP_004003995.1| - 0.00042 19.4 0.0 0.0029 16.6 0.0 2.1 1 1 0 2 2 2 1 Phosphotriesterase family BBIP10 PF14777.1 gi|312136658|ref|YP_004003995.1| - 0.1 11.9 0.5 0.7 9.3 0.0 2.1 2 0 0 2 2 2 0 Cilia BBSome complex subunit 10 Lipid_DES PF08557.5 gi|312136659|ref|YP_004003996.1| - 0.045 12.9 0.6 0.095 11.9 0.4 1.5 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) Rad17 PF03215.10 gi|312136660|ref|YP_004003997.1| - 1.1e-11 44.1 2.8 1e-05 24.4 0.0 2.7 2 1 1 3 3 3 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|312136660|ref|YP_004003997.1| - 3.1e-09 36.2 0.0 3.5e-08 32.8 0.0 2.4 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|312136660|ref|YP_004003997.1| - 5.5e-09 36.3 0.1 2.1e-08 34.4 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|312136660|ref|YP_004003997.1| - 6.3e-06 25.9 0.2 9.4e-05 22.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|312136660|ref|YP_004003997.1| - 2e-05 24.5 0.0 5.3e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|312136660|ref|YP_004003997.1| - 8.2e-05 22.5 0.0 0.00021 21.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|312136660|ref|YP_004003997.1| - 0.00011 22.3 0.5 0.024 14.7 0.2 3.0 1 1 1 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|312136660|ref|YP_004003997.1| - 0.00013 21.7 1.9 0.00068 19.4 0.1 3.0 1 1 0 2 2 2 1 Archaeal ATPase Bac_DnaA PF00308.13 gi|312136660|ref|YP_004003997.1| - 0.00042 20.0 0.0 0.14 11.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_16 PF13191.1 gi|312136660|ref|YP_004003997.1| - 0.00065 19.7 0.1 0.01 15.8 0.0 2.5 1 1 2 3 3 3 1 AAA ATPase domain AAA_18 PF13238.1 gi|312136660|ref|YP_004003997.1| - 0.0029 17.9 2.9 0.014 15.7 0.0 3.2 3 1 0 3 3 3 1 AAA domain ResIII PF04851.10 gi|312136660|ref|YP_004003997.1| - 0.0034 17.2 0.0 0.019 14.8 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|312136660|ref|YP_004003997.1| - 0.0034 17.5 0.1 0.012 15.7 0.0 2.1 2 0 0 2 2 1 1 RNA helicase DEAD PF00270.24 gi|312136660|ref|YP_004003997.1| - 0.0039 16.6 0.0 3 7.2 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF815 PF05673.8 gi|312136660|ref|YP_004003997.1| - 0.012 14.5 0.0 0.024 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|312136660|ref|YP_004003997.1| - 0.018 14.5 0.0 0.046 13.1 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|312136660|ref|YP_004003997.1| - 0.018 15.8 0.9 0.098 13.4 0.1 2.6 3 2 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|312136660|ref|YP_004003997.1| - 0.019 14.3 0.2 0.06 12.7 0.1 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|312136660|ref|YP_004003997.1| - 0.028 14.1 0.1 0.11 12.1 0.0 2.0 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|312136660|ref|YP_004003997.1| - 0.029 14.6 0.5 0.1 12.8 0.3 2.3 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.7 gi|312136660|ref|YP_004003997.1| - 0.035 13.2 0.1 0.15 11.0 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin Sigma54_activ_2 PF14532.1 gi|312136660|ref|YP_004003997.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2766 PF10964.3 gi|312136660|ref|YP_004003997.1| - 0.069 13.0 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2766) Rep_fac_C PF08542.6 gi|312136661|ref|YP_004003998.1| - 4.1e-21 74.7 0.1 1.3e-20 73.1 0.0 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|312136661|ref|YP_004003998.1| - 1.3e-17 64.2 0.3 3e-16 59.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|312136661|ref|YP_004003998.1| - 5.5e-17 61.9 0.0 8.8e-15 54.7 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|312136661|ref|YP_004003998.1| - 4.2e-13 48.8 0.1 4.2e-07 29.0 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|312136661|ref|YP_004003998.1| - 3.8e-08 33.2 0.0 9.9e-08 31.9 0.0 1.7 1 1 1 2 2 1 1 AAA domain TIP49 PF06068.8 gi|312136661|ref|YP_004003998.1| - 7e-08 31.5 0.3 0.00067 18.4 0.0 2.4 3 0 0 3 3 2 2 TIP49 C-terminus DNA_pol3_delta PF06144.8 gi|312136661|ref|YP_004003998.1| - 1.5e-07 31.0 0.1 3.2e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|312136661|ref|YP_004003998.1| - 2.1e-07 30.2 0.6 1.6e-06 27.3 0.1 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|312136661|ref|YP_004003998.1| - 2.7e-06 26.7 0.0 0.0017 17.5 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|312136661|ref|YP_004003998.1| - 1e-05 25.5 0.1 0.00074 19.5 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|312136661|ref|YP_004003998.1| - 8.5e-05 22.0 0.0 0.00019 20.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|312136661|ref|YP_004003998.1| - 0.0001 22.4 0.1 0.006 16.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|312136661|ref|YP_004003998.1| - 0.0001 23.0 0.2 0.00034 21.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|312136661|ref|YP_004003998.1| - 0.00023 20.6 0.0 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|312136661|ref|YP_004003998.1| - 0.00031 20.2 0.0 0.003 17.0 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|312136661|ref|YP_004003998.1| - 0.00032 20.4 0.2 0.0075 15.9 0.1 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|312136661|ref|YP_004003998.1| - 0.00039 20.7 0.1 0.0012 19.1 0.0 2.0 2 2 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|312136661|ref|YP_004003998.1| - 0.00064 19.6 0.0 0.0037 17.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) ResIII PF04851.10 gi|312136661|ref|YP_004003998.1| - 0.0007 19.4 0.1 0.0036 17.1 0.0 2.0 2 2 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|312136661|ref|YP_004003998.1| - 0.00088 18.5 0.4 0.021 14.0 0.0 2.3 1 1 0 2 2 2 1 PhoH-like protein DUF258 PF03193.11 gi|312136661|ref|YP_004003998.1| - 0.0017 17.5 0.0 0.0036 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|312136661|ref|YP_004003998.1| - 0.0075 16.4 0.0 0.03 14.4 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_19 PF13245.1 gi|312136661|ref|YP_004003998.1| - 0.0076 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|312136661|ref|YP_004003998.1| - 0.0082 15.7 0.0 0.03 13.8 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|312136661|ref|YP_004003998.1| - 0.0089 15.6 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3400 PF11880.3 gi|312136661|ref|YP_004003998.1| - 0.0098 15.0 0.0 0.024 13.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3400) Sigma54_activ_2 PF14532.1 gi|312136661|ref|YP_004003998.1| - 0.019 14.9 0.0 0.085 12.9 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain TPR_14 PF13428.1 gi|312136661|ref|YP_004003998.1| - 0.025 15.1 0.9 0.33 11.7 0.1 2.8 3 0 0 3 3 2 0 Tetratricopeptide repeat NB-ARC PF00931.17 gi|312136661|ref|YP_004003998.1| - 0.034 13.0 0.1 0.91 8.3 0.0 2.4 2 1 0 2 2 2 0 NB-ARC domain TPR_19 PF14559.1 gi|312136661|ref|YP_004003998.1| - 0.056 13.7 0.6 0.86 9.9 0.1 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|312136661|ref|YP_004003998.1| - 0.059 13.3 0.0 0.37 10.7 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat MobB PF03205.9 gi|312136661|ref|YP_004003998.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|312136661|ref|YP_004003998.1| - 0.061 12.2 0.0 0.13 11.0 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein TPR_10 PF13374.1 gi|312136661|ref|YP_004003998.1| - 0.066 13.1 0.8 0.34 10.9 0.0 2.5 3 0 0 3 3 2 0 Tetratricopeptide repeat DEAD PF00270.24 gi|312136661|ref|YP_004003998.1| - 0.067 12.6 0.0 0.31 10.5 0.0 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase TPR_2 PF07719.12 gi|312136661|ref|YP_004003998.1| - 0.068 13.1 0.4 0.24 11.3 0.1 2.1 2 0 0 2 2 1 0 Tetratricopeptide repeat DUF815 PF05673.8 gi|312136661|ref|YP_004003998.1| - 0.086 11.7 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|312136661|ref|YP_004003998.1| - 0.11 12.3 0.3 0.5 10.2 0.2 2.2 2 1 0 2 2 2 0 AAA domain TPR_7 PF13176.1 gi|312136661|ref|YP_004003998.1| - 0.12 12.1 0.1 0.5 10.3 0.1 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_10 PF12846.2 gi|312136661|ref|YP_004003998.1| - 0.21 10.9 0.9 2.3 7.5 0.6 2.6 1 1 0 1 1 1 0 AAA-like domain Lyase_1 PF00206.15 gi|312136662|ref|YP_004003999.1| - 7.5e-66 222.4 0.1 1.1e-65 221.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|312136662|ref|YP_004003999.1| - 3.3e-17 62.3 0.0 1.6e-16 60.1 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal PP-binding_2 PF14573.1 gi|312136662|ref|YP_004003999.1| - 0.053 13.5 0.0 0.37 10.8 0.0 2.4 2 0 0 2 2 2 0 Acyl-carrier S-AdoMet_synt_M PF02772.11 gi|312136662|ref|YP_004003999.1| - 0.14 12.0 1.4 3.6 7.5 0.1 3.2 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, central domain Ribosomal_S27 PF01599.14 gi|312136663|ref|YP_004004000.1| - 8.8e-22 76.6 2.7 1e-21 76.4 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a GFA PF04828.9 gi|312136663|ref|YP_004004000.1| - 0.0033 17.3 1.3 0.24 11.3 0.0 2.0 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|312136663|ref|YP_004004000.1| - 0.0035 17.1 0.4 0.0043 16.8 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|312136663|ref|YP_004004000.1| - 0.043 13.4 5.1 0.5 10.0 3.5 2.2 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|312136663|ref|YP_004004000.1| - 0.06 13.1 3.8 0.1 12.4 2.4 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|312136663|ref|YP_004004000.1| - 0.072 12.7 0.5 0.078 12.6 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NCD3G PF07562.9 gi|312136663|ref|YP_004004000.1| - 0.089 12.5 0.4 0.12 12.1 0.2 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR TF_Zn_Ribbon PF08271.7 gi|312136663|ref|YP_004004000.1| - 0.12 11.6 2.4 0.18 11.1 1.7 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|312136663|ref|YP_004004000.1| - 0.13 11.8 7.0 0.13 11.8 0.3 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|312136663|ref|YP_004004000.1| - 0.71 9.4 3.0 4.7 6.8 1.7 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF1936 PF09151.5 gi|312136663|ref|YP_004004000.1| - 0.74 9.3 2.9 4 7.0 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) Zn-ribbon_8 PF09723.5 gi|312136663|ref|YP_004004000.1| - 1.3 9.0 5.6 11 6.0 0.5 2.2 1 1 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|312136663|ref|YP_004004000.1| - 1.5 8.5 6.5 15 5.3 4.5 2.1 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|312136663|ref|YP_004004000.1| - 4.3 6.6 9.0 2.7 7.3 0.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|312136663|ref|YP_004004000.1| - 4.9 6.7 6.9 68 3.0 4.8 2.1 1 1 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_2 PF13240.1 gi|312136663|ref|YP_004004000.1| - 5.7 6.5 8.9 5.5 6.6 0.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_S24e PF01282.14 gi|312136664|ref|YP_004004001.1| - 2.7e-27 94.3 0.1 3.7e-27 93.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e CR6_interact PF10147.4 gi|312136664|ref|YP_004004001.1| - 0.18 11.0 1.1 0.24 10.7 0.0 1.6 2 0 0 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 DUF359 PF04019.7 gi|312136665|ref|YP_004004002.1| - 1.2e-37 127.9 0.4 1.5e-37 127.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) MAF_flag10 PF01973.13 gi|312136665|ref|YP_004004002.1| - 0.012 15.1 0.4 0.029 13.8 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF115 HEM4 PF02602.10 gi|312136665|ref|YP_004004002.1| - 0.044 13.0 0.0 0.064 12.4 0.0 1.3 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Spt4 PF06093.8 gi|312136666|ref|YP_004004003.1| - 5e-16 58.3 0.6 8.1e-16 57.6 0.4 1.3 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|312136666|ref|YP_004004003.1| - 0.0076 15.6 2.8 0.01 15.2 1.9 1.2 1 0 0 1 1 1 1 RecR protein DZR PF12773.2 gi|312136666|ref|YP_004004003.1| - 0.04 13.7 2.4 0.055 13.2 1.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon Nop10p PF04135.7 gi|312136666|ref|YP_004004003.1| - 0.062 13.0 0.8 0.093 12.4 0.6 1.3 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-C3HC4_3 PF13920.1 gi|312136666|ref|YP_004004003.1| - 0.078 12.6 4.4 0.11 12.2 3.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NRDD PF13597.1 gi|312136666|ref|YP_004004003.1| - 0.34 8.9 1.5 0.42 8.6 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Auto_anti-p27 PF06677.7 gi|312136666|ref|YP_004004003.1| - 0.79 9.5 4.7 16 5.3 0.4 2.3 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_5 PF14634.1 gi|312136666|ref|YP_004004003.1| - 0.95 9.2 4.6 1.5 8.6 3.2 1.4 1 0 0 1 1 1 0 zinc-RING finger domain SHS2_Rpb7-N PF03876.12 gi|312136667|ref|YP_004004004.1| - 2.5e-18 65.9 0.0 4.5e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|312136667|ref|YP_004004004.1| - 8.9e-16 57.7 0.9 1.8e-15 56.7 0.6 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Pyrophosphatase PF00719.14 gi|312136668|ref|YP_004004005.1| - 2.7e-62 208.8 0.3 3.1e-62 208.6 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Fcf1 PF04900.7 gi|312136669|ref|YP_004004006.1| - 5.2e-09 36.1 0.3 7.2e-09 35.6 0.2 1.3 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|312136669|ref|YP_004004006.1| - 0.05 13.7 0.2 0.085 12.9 0.1 1.6 1 1 0 1 1 1 0 PIN domain SAF PF08666.7 gi|312136669|ref|YP_004004006.1| - 0.091 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 SAF domain Sec62 PF03839.11 gi|312136669|ref|YP_004004006.1| - 0.12 11.7 0.4 0.13 11.6 0.3 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 GTP_EFTU PF00009.22 gi|312136671|ref|YP_004004008.1| - 2.4e-44 151.0 0.3 3.6e-44 150.4 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|312136671|ref|YP_004004008.1| - 1.7e-31 108.1 0.1 4.1e-31 106.8 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|312136671|ref|YP_004004008.1| - 3e-07 30.4 0.5 3e-07 30.4 0.3 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|312136671|ref|YP_004004008.1| - 0.00045 19.7 0.6 0.26 10.7 0.0 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|312136671|ref|YP_004004008.1| - 0.0021 17.9 0.0 0.0052 16.7 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|312136671|ref|YP_004004008.1| - 0.013 14.3 0.7 0.029 13.1 0.1 1.8 2 0 0 2 2 2 0 ArgK protein FeoB_N PF02421.13 gi|312136671|ref|YP_004004008.1| - 0.044 13.0 0.6 3 7.1 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Nop10p PF04135.7 gi|312136671|ref|YP_004004008.1| - 0.05 13.3 1.3 0.099 12.3 0.9 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family NOB1_Zn_bind PF08772.6 gi|312136671|ref|YP_004004008.1| - 0.093 12.5 2.0 0.21 11.4 1.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|312136671|ref|YP_004004008.1| - 0.16 11.1 6.7 0.29 10.3 4.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_S6e PF01092.14 gi|312136672|ref|YP_004004009.1| - 1.2e-39 134.7 1.7 1.5e-39 134.5 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|312136673|ref|YP_004004010.1| - 7.7e-35 120.0 0.3 5.8e-34 117.1 0.2 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|312136673|ref|YP_004004010.1| - 1.9e-23 82.4 4.6 1.9e-23 82.4 3.2 2.5 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|312136673|ref|YP_004004010.1| - 5.3e-20 70.8 2.9 5.3e-20 70.8 2.0 2.7 2 1 1 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|312136673|ref|YP_004004010.1| - 1.4e-09 37.9 0.4 1.4e-09 37.9 0.3 3.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|312136673|ref|YP_004004010.1| - 1.6e-06 28.0 1.4 4.7e-06 26.5 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|312136673|ref|YP_004004010.1| - 8.5e-05 22.2 0.0 0.00033 20.2 0.0 1.9 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|312136673|ref|YP_004004010.1| - 0.0011 18.8 0.2 0.072 12.8 0.0 3.3 2 1 1 3 3 3 1 Dynamin family ComZ PF10815.3 gi|312136673|ref|YP_004004010.1| - 0.012 15.4 0.4 1.3 8.8 0.0 3.3 3 0 0 3 3 3 0 ComZ Miro PF08477.8 gi|312136673|ref|YP_004004010.1| - 0.019 15.4 0.0 0.075 13.5 0.0 2.0 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|312136673|ref|YP_004004010.1| - 0.044 13.2 0.1 1.1 8.7 0.0 2.9 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NDK PF00334.14 gi|312136674|ref|YP_004004011.1| - 2.2e-62 208.8 0.3 2.4e-62 208.6 0.2 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|312136675|ref|YP_004004012.1| - 4.2e-21 74.5 2.8 4.4e-21 74.5 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Arc_trans_TRASH PF08394.5 gi|312136675|ref|YP_004004012.1| - 9.2e-05 22.5 0.9 0.00021 21.3 0.6 1.6 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|312136675|ref|YP_004004012.1| - 0.001 18.6 3.2 0.0015 18.1 2.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|312136675|ref|YP_004004012.1| - 0.0015 18.3 1.2 0.002 17.9 0.8 1.1 1 0 0 1 1 1 1 YHS domain DUF2175 PF09943.4 gi|312136675|ref|YP_004004012.1| - 0.06 13.4 0.5 0.063 13.3 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zf-C4_ClpX PF06689.8 gi|312136675|ref|YP_004004012.1| - 0.14 11.7 0.1 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 ClpX C4-type zinc finger Zn_ribbon_recom PF13408.1 gi|312136675|ref|YP_004004012.1| - 0.31 11.3 1.8 0.37 11.1 1.2 1.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|312136675|ref|YP_004004012.1| - 0.45 9.7 0.3 0.45 9.7 0.2 2.1 1 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|312136676|ref|YP_004004013.1| - 4.3e-32 109.6 3.6 4.9e-32 109.4 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|312136677|ref|YP_004004014.1| - 1.8e-29 101.0 0.2 2.2e-29 100.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|312136677|ref|YP_004004014.1| - 0.0035 17.6 0.1 0.004 17.3 0.1 1.2 1 1 0 1 1 1 1 eRF1 domain 3 PELOTA_1 PF15608.1 gi|312136677|ref|YP_004004014.1| - 0.029 14.1 0.1 0.039 13.7 0.1 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain Enolase_N PF03952.11 gi|312136677|ref|YP_004004014.1| - 0.03 14.2 0.1 0.039 13.8 0.1 1.2 1 0 0 1 1 1 0 Enolase, N-terminal domain Mrr_cat PF04471.7 gi|312136679|ref|YP_004004016.1| - 1.9e-08 34.0 0.2 2.8e-08 33.5 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease CoA_binding_2 PF13380.1 gi|312136679|ref|YP_004004016.1| - 0.012 15.7 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain FdhD-NarQ PF02634.10 gi|312136679|ref|YP_004004016.1| - 0.045 13.1 0.1 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 FdhD/NarQ family HIGH_NTase1 PF05636.6 gi|312136680|ref|YP_004004017.1| - 2.7e-16 59.6 1.3 3.7e-11 42.7 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase ATP-sulfurylase PF01747.12 gi|312136680|ref|YP_004004017.1| - 0.00046 19.5 0.0 0.0036 16.6 0.0 2.2 2 0 0 2 2 2 1 ATP-sulfurylase HHH_3 PF12836.2 gi|312136680|ref|YP_004004017.1| - 0.0014 18.5 1.7 0.0025 17.7 0.6 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|312136680|ref|YP_004004017.1| - 0.049 13.4 0.7 0.81 9.5 0.1 3.1 3 0 0 3 3 3 0 Photosystem II 12 kDa extrinsic protein (PsbU) FKBP_C PF00254.23 gi|312136681|ref|YP_004004018.1| - 2.1e-18 66.1 0.2 6.1e-18 64.6 0.1 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase BON PF04972.12 gi|312136681|ref|YP_004004018.1| - 0.048 13.4 0.2 13 5.6 0.0 2.6 2 0 0 2 2 2 0 BON domain tRNA-synt_2b PF00587.20 gi|312136682|ref|YP_004004019.1| - 7.3e-13 48.4 0.0 1.3e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Pcc1 PF09341.5 gi|312136683|ref|YP_004004020.1| - 0.0012 18.8 0.0 0.0034 17.3 0.0 1.8 1 1 0 1 1 1 1 Transcription factor Pcc1 CbiA PF01656.18 gi|312136684|ref|YP_004004021.1| - 1.3e-37 129.1 1.1 1.7e-37 128.7 0.8 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|312136684|ref|YP_004004021.1| - 1.7e-08 33.9 0.6 1.2e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|312136684|ref|YP_004004021.1| - 4.7e-08 32.5 4.1 0.0014 17.9 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|312136684|ref|YP_004004021.1| - 3e-06 27.2 0.4 0.023 14.6 0.0 2.5 3 0 0 3 3 2 2 AAA domain AAA_26 PF13500.1 gi|312136684|ref|YP_004004021.1| - 6.2e-06 25.9 3.9 3.6e-05 23.4 0.4 2.1 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|312136684|ref|YP_004004021.1| - 8.8e-05 21.9 0.0 0.019 14.3 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_17 PF13207.1 gi|312136684|ref|YP_004004021.1| - 0.00091 20.0 0.9 0.0026 18.5 0.6 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|312136684|ref|YP_004004021.1| - 0.0025 17.5 0.3 0.0068 16.1 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|312136684|ref|YP_004004021.1| - 0.0036 17.5 0.4 0.0091 16.2 0.3 1.9 1 1 0 1 1 1 1 ABC transporter GTP_EFTU PF00009.22 gi|312136684|ref|YP_004004021.1| - 0.0038 16.6 1.3 0.28 10.6 0.2 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_24 PF13479.1 gi|312136684|ref|YP_004004021.1| - 0.0049 16.4 0.1 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|312136684|ref|YP_004004021.1| - 0.0086 16.3 0.2 0.021 15.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|312136684|ref|YP_004004021.1| - 0.016 14.6 0.2 0.28 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain NTPase_1 PF03266.10 gi|312136684|ref|YP_004004021.1| - 0.017 14.8 3.3 0.018 14.7 0.1 2.2 2 0 0 2 2 2 0 NTPase DUF1574 PF07611.6 gi|312136684|ref|YP_004004021.1| - 0.018 13.9 0.5 0.026 13.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1574) AAA_16 PF13191.1 gi|312136684|ref|YP_004004021.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|312136684|ref|YP_004004021.1| - 0.033 14.6 0.1 0.26 11.7 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_14 PF13173.1 gi|312136684|ref|YP_004004021.1| - 0.038 13.8 0.1 0.11 12.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain Mur_ligase_M PF08245.7 gi|312136684|ref|YP_004004021.1| - 0.049 13.6 0.4 0.094 12.7 0.1 1.6 2 0 0 2 2 2 0 Mur ligase middle domain AAA_28 PF13521.1 gi|312136684|ref|YP_004004021.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|312136684|ref|YP_004004021.1| - 0.075 12.6 0.2 0.15 11.6 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|312136684|ref|YP_004004021.1| - 0.076 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|312136684|ref|YP_004004021.1| - 0.086 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|312136684|ref|YP_004004021.1| - 0.1 11.4 0.3 0.19 10.5 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain ParA PF10609.4 gi|312136684|ref|YP_004004021.1| - 0.12 12.2 0.2 0.27 11.1 0.1 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like Methyltransf_31 PF13847.1 gi|312136684|ref|YP_004004021.1| - 0.13 11.8 0.8 0.38 10.3 0.1 2.0 2 1 0 2 2 2 0 Methyltransferase domain DUF87 PF01935.12 gi|312136684|ref|YP_004004021.1| - 0.15 11.8 2.6 1.2 8.8 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|312136684|ref|YP_004004021.1| - 0.73 9.8 3.9 7.9 6.4 2.7 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase Usp PF00582.21 gi|312136685|ref|YP_004004022.1| - 4.8e-39 133.7 0.1 5.5e-39 133.5 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family CCDC144C PF14915.1 gi|312136685|ref|YP_004004022.1| - 0.035 13.0 3.0 0.047 12.6 2.1 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region MGS PF02142.17 gi|312136685|ref|YP_004004022.1| - 0.038 13.9 0.7 0.069 13.0 0.3 1.6 1 1 0 1 1 1 0 MGS-like domain PTS_EIIA_1 PF00358.15 gi|312136685|ref|YP_004004022.1| - 0.038 13.5 0.3 0.35 10.4 0.0 2.0 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF4559 PF15112.1 gi|312136685|ref|YP_004004022.1| - 0.05 12.7 0.5 0.054 12.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) ETF PF01012.16 gi|312136685|ref|YP_004004022.1| - 0.055 13.1 0.0 0.24 11.1 0.0 1.9 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DUF148 PF02520.12 gi|312136685|ref|YP_004004022.1| - 0.09 12.5 0.7 0.19 11.5 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF148 Amidohydro_1 PF01979.15 gi|312136686|ref|YP_004004023.1| - 4.5e-28 98.8 0.0 7.9e-28 98.0 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|312136686|ref|YP_004004023.1| - 1.1e-09 37.9 0.1 1.1e-09 37.9 0.1 2.8 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|312136686|ref|YP_004004023.1| - 7.7e-08 32.7 0.0 0.0059 16.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|312136686|ref|YP_004004023.1| - 0.08 12.1 0.0 4.3 6.4 0.0 2.5 1 1 0 2 2 2 0 Amidohydrolase family A_deaminase PF00962.17 gi|312136686|ref|YP_004004023.1| - 0.093 11.6 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Adenosine/AMP deaminase AAA_32 PF13654.1 gi|312136687|ref|YP_004004024.1| - 1.8e-16 59.9 0.0 5.5e-12 45.1 0.2 3.0 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|312136687|ref|YP_004004024.1| - 4.5e-15 55.3 0.0 2.5e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|312136687|ref|YP_004004024.1| - 9.4e-11 41.4 0.0 1.4e-05 24.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|312136687|ref|YP_004004024.1| - 6.6e-08 31.7 0.2 0.17 10.6 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|312136687|ref|YP_004004024.1| - 9.4e-08 31.8 0.0 0.0008 19.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|312136687|ref|YP_004004024.1| - 1.4e-07 31.7 0.0 0.0022 18.1 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|312136687|ref|YP_004004024.1| - 6.8e-06 26.2 0.0 0.048 13.7 0.0 3.5 3 1 0 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|312136687|ref|YP_004004024.1| - 2.2e-05 23.6 0.0 0.041 12.9 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|312136687|ref|YP_004004024.1| - 2.2e-05 24.5 0.0 0.00034 20.6 0.0 2.4 3 0 0 3 3 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|312136687|ref|YP_004004024.1| - 0.00029 20.2 0.0 0.00063 19.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|312136687|ref|YP_004004024.1| - 0.00032 21.5 0.0 0.041 14.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|312136687|ref|YP_004004024.1| - 0.00098 19.0 0.0 2 8.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|312136687|ref|YP_004004024.1| - 0.0046 15.9 0.0 0.014 14.3 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|312136687|ref|YP_004004024.1| - 0.0052 17.0 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter DZR PF12773.2 gi|312136687|ref|YP_004004024.1| - 0.007 16.1 0.6 0.012 15.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon AAA_19 PF13245.1 gi|312136687|ref|YP_004004024.1| - 0.0073 16.0 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|312136687|ref|YP_004004024.1| - 0.008 16.2 0.0 0.058 13.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|312136687|ref|YP_004004024.1| - 0.026 14.4 0.0 9.1 6.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF2072 PF09845.4 gi|312136687|ref|YP_004004024.1| - 0.033 14.1 3.1 0.038 13.9 0.2 2.4 2 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) FtsK_SpoIIIE PF01580.13 gi|312136687|ref|YP_004004024.1| - 0.11 11.9 0.0 3.3 7.1 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family Parvo_NS1 PF01057.12 gi|312136687|ref|YP_004004024.1| - 0.12 11.1 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_29 PF13555.1 gi|312136687|ref|YP_004004024.1| - 0.16 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain zinc_ribbon_2 PF13240.1 gi|312136687|ref|YP_004004024.1| - 0.2 11.1 3.2 0.43 10.1 2.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|312136687|ref|YP_004004024.1| - 0.72 9.1 2.7 1.3 8.3 1.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Toprim_4 PF13662.1 gi|312136688|ref|YP_004004025.1| - 8.8e-09 35.2 2.3 1.6e-08 34.4 0.3 2.4 3 0 0 3 3 3 1 Toprim domain Toprim PF01751.17 gi|312136688|ref|YP_004004025.1| - 0.0089 15.9 2.3 0.0089 15.9 1.6 3.7 2 2 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|312136688|ref|YP_004004025.1| - 0.05 13.9 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 Toprim-like Toprim PF01751.17 gi|312136689|ref|YP_004004026.1| - 1.7e-05 24.6 0.3 3.5e-05 23.6 0.2 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|312136689|ref|YP_004004026.1| - 0.00017 21.5 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Shigella_OspC PF06128.6 gi|312136689|ref|YP_004004026.1| - 0.02 14.4 0.1 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 Shigella flexneri OspC protein Toprim_3 PF13362.1 gi|312136689|ref|YP_004004026.1| - 0.049 13.8 0.0 0.071 13.3 0.0 1.3 1 0 0 1 1 1 0 Toprim domain DUF4265 PF14085.1 gi|312136689|ref|YP_004004026.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) Toprim_2 PF13155.1 gi|312136689|ref|YP_004004026.1| - 0.069 13.4 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 Toprim-like Methyltransf_6 PF03737.10 gi|312136690|ref|YP_004004027.1| - 4.2e-36 124.1 0.5 5.2e-36 123.8 0.4 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase Peptidase_S8 PF00082.17 gi|312136690|ref|YP_004004027.1| - 0.019 14.1 0.1 0.023 13.8 0.1 1.1 1 0 0 1 1 1 0 Subtilase family Fimbrial_PilY2 PF14481.1 gi|312136690|ref|YP_004004027.1| - 0.03 13.7 0.0 0.084 12.3 0.0 1.6 1 1 1 2 2 2 0 Type 4 fimbrial biogenesis protein PilY2 Xpo1 PF08389.7 gi|312136690|ref|YP_004004027.1| - 0.14 12.1 0.5 0.54 10.1 0.2 1.9 2 0 0 2 2 2 0 Exportin 1-like protein TauE PF01925.14 gi|312136691|ref|YP_004004028.1| - 1.2e-40 139.4 37.3 1.4e-40 139.2 25.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Glyco_trans_1_3 PF13528.1 gi|312136693|ref|YP_004004030.1| - 1.3e-92 310.4 0.0 2.1e-92 309.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glycos_transf_2 PF00535.21 gi|312136693|ref|YP_004004030.1| - 1.4e-33 116.0 0.0 5.5e-33 114.0 0.0 2.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312136693|ref|YP_004004030.1| - 2.2e-15 57.0 0.0 3.6e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|312136693|ref|YP_004004030.1| - 7.4e-14 51.4 3.3 4.9e-12 45.5 0.1 3.1 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tran_28_C PF04101.11 gi|312136693|ref|YP_004004030.1| - 1.6e-08 34.3 0.0 3.9e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_21 PF13506.1 gi|312136693|ref|YP_004004030.1| - 3.6e-05 23.1 0.0 8.2e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|312136693|ref|YP_004004030.1| - 0.00099 19.3 0.0 0.0078 16.5 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|312136693|ref|YP_004004030.1| - 0.0011 18.3 0.1 0.018 14.2 0.1 2.5 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|312136693|ref|YP_004004030.1| - 0.028 14.1 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family group 2 PDH PF02153.12 gi|312136693|ref|YP_004004030.1| - 0.15 10.9 0.0 0.99 8.2 0.0 2.1 2 0 0 2 2 2 0 Prephenate dehydrogenase TFIIB PF00382.14 gi|312136694|ref|YP_004004031.1| - 4.2e-47 157.8 3.6 3.8e-23 81.0 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|312136694|ref|YP_004004031.1| - 3.3e-18 64.7 1.4 3.3e-18 64.7 1.0 2.0 3 0 0 3 3 3 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|312136694|ref|YP_004004031.1| - 2.2e-06 26.8 1.8 0.005 16.1 0.4 3.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|312136694|ref|YP_004004031.1| - 0.00031 20.0 1.5 0.015 14.6 0.3 3.5 3 1 1 4 4 4 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|312136694|ref|YP_004004031.1| - 0.0011 18.4 1.2 0.048 13.1 0.1 3.1 4 0 0 4 4 2 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|312136694|ref|YP_004004031.1| - 0.0012 18.4 0.0 0.77 9.3 0.0 2.2 1 1 1 2 2 2 2 Cyclin, N-terminal domain GerE PF00196.14 gi|312136694|ref|YP_004004031.1| - 0.0015 17.8 0.1 0.081 12.2 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family Lar_restr_allev PF14354.1 gi|312136694|ref|YP_004004031.1| - 0.0022 18.2 0.3 0.049 13.9 0.1 2.3 2 0 0 2 2 2 1 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|312136694|ref|YP_004004031.1| - 0.0042 16.9 0.3 0.0042 16.9 0.2 1.9 2 0 0 2 2 1 1 Probable metal-binding protein (DUF2387) HTH_AsnC-type PF13404.1 gi|312136694|ref|YP_004004031.1| - 0.0043 16.5 2.4 0.017 14.6 0.8 2.7 3 1 1 4 4 2 1 AsnC-type helix-turn-helix domain UPF0181 PF03701.9 gi|312136694|ref|YP_004004031.1| - 0.0051 16.0 0.2 0.012 14.9 0.1 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0181) Ribosomal_S27e PF01667.12 gi|312136694|ref|YP_004004031.1| - 0.0095 15.4 0.3 0.0095 15.4 0.2 1.7 2 0 0 2 2 1 1 Ribosomal protein S27 RPA_interact_C PF14768.1 gi|312136694|ref|YP_004004031.1| - 0.015 15.6 0.4 0.83 10.0 0.1 2.3 2 0 0 2 2 2 0 Replication protein A interacting C-terminal OrfB_Zn_ribbon PF07282.6 gi|312136694|ref|YP_004004031.1| - 0.016 14.8 0.5 0.045 13.4 0.4 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_3 PF01381.17 gi|312136694|ref|YP_004004031.1| - 0.035 13.9 0.4 1.3 8.9 0.1 3.2 3 1 1 4 4 3 0 Helix-turn-helix HARE-HTH PF05066.8 gi|312136694|ref|YP_004004031.1| - 0.04 14.2 0.1 3.1 8.1 0.0 2.8 3 0 0 3 3 2 0 HB1, ASXL, restriction endonuclease HTH domain HTH_11 PF08279.7 gi|312136694|ref|YP_004004031.1| - 0.044 13.4 0.9 0.42 10.3 0.3 2.7 3 0 0 3 3 3 0 HTH domain DZR PF12773.2 gi|312136694|ref|YP_004004031.1| - 0.051 13.4 0.8 0.19 11.5 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon HTH_23 PF13384.1 gi|312136694|ref|YP_004004031.1| - 0.053 13.1 0.4 0.053 13.1 0.3 3.1 4 0 0 4 4 2 0 Homeodomain-like domain TrmB PF01978.14 gi|312136694|ref|YP_004004031.1| - 0.059 13.0 3.1 9.1 6.0 0.2 3.4 4 0 0 4 4 3 0 Sugar-specific transcriptional regulator TrmB Trp_repressor PF01371.14 gi|312136694|ref|YP_004004031.1| - 0.061 13.2 0.7 0.56 10.1 0.1 2.4 2 0 0 2 2 2 0 Trp repressor protein zf-ribbon_3 PF13248.1 gi|312136694|ref|YP_004004031.1| - 0.063 12.5 0.2 0.063 12.5 0.1 1.8 2 0 0 2 2 1 0 zinc-ribbon domain Cyclin_C PF02984.14 gi|312136694|ref|YP_004004031.1| - 0.12 12.3 0.0 2.2 8.2 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain Prim_Zn_Ribbon PF08273.7 gi|312136694|ref|YP_004004031.1| - 0.18 11.9 0.2 0.18 11.9 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase HTH_10 PF04967.7 gi|312136694|ref|YP_004004031.1| - 0.19 11.3 1.9 7.1 6.2 0.0 3.8 4 0 0 4 4 4 0 HTH DNA binding domain zf-ISL3 PF14690.1 gi|312136694|ref|YP_004004031.1| - 0.38 10.8 2.6 5.4 7.1 0.6 3.2 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|312136694|ref|YP_004004031.1| - 0.78 9.4 3.2 4.6 7.0 0.4 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF4182 PF13790.1 gi|312136694|ref|YP_004004031.1| - 1.7 8.4 5.8 9.3 6.1 0.3 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4182) PhnA_Zn_Ribbon PF08274.7 gi|312136694|ref|YP_004004031.1| - 2.7 7.8 5.1 1.7 8.5 1.6 2.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon YhfH PF14149.1 gi|312136694|ref|YP_004004031.1| - 2.9 7.7 6.1 5.2 6.9 2.5 2.5 2 1 1 3 3 2 0 YhfH-like protein HTH_28 PF13518.1 gi|312136694|ref|YP_004004031.1| - 3 7.9 8.1 4.7 7.3 0.2 4.2 3 1 0 4 4 4 0 Helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|312136694|ref|YP_004004031.1| - 3.6 7.1 7.2 0.16 11.4 0.4 2.2 3 1 0 3 3 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|312136694|ref|YP_004004031.1| - 4.3 6.8 7.2 1.3 8.5 2.2 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|312136694|ref|YP_004004031.1| - 8.9 6.3 7.0 26 4.8 3.0 2.7 2 1 0 2 2 2 0 Zinc ribbon domain Gar1 PF04410.9 gi|312136695|ref|YP_004004032.1| - 2.1e-08 33.7 0.1 2.4e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|312136695|ref|YP_004004032.1| - 0.037 13.8 0.2 0.065 13.1 0.0 1.7 2 1 0 2 2 2 0 PRC-barrel domain NMD3 PF04981.8 gi|312136696|ref|YP_004004033.1| - 9.4e-54 182.0 9.5 9.4e-54 182.0 6.6 1.4 2 0 0 2 2 2 1 NMD3 family Dyp_perox PF04261.7 gi|312136696|ref|YP_004004033.1| - 0.16 10.6 0.0 0.51 9.0 0.0 1.7 1 1 1 2 2 2 0 Dyp-type peroxidase family A2L_zn_ribbon PF08792.5 gi|312136696|ref|YP_004004033.1| - 0.57 9.7 6.8 0.71 9.4 0.4 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain FYVE PF01363.16 gi|312136696|ref|YP_004004033.1| - 0.61 10.0 8.3 0.51 10.2 3.5 2.1 2 0 0 2 2 2 0 FYVE zinc finger DZR PF12773.2 gi|312136696|ref|YP_004004033.1| - 4.7 7.1 10.7 9.6 6.1 4.4 2.8 2 1 1 3 3 3 0 Double zinc ribbon tRNA-synt_1b PF00579.20 gi|312136697|ref|YP_004004034.1| - 1.2e-49 169.0 0.0 1.4e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|312136697|ref|YP_004004034.1| - 5.5e-06 25.2 0.1 0.0062 15.2 0.0 2.5 2 1 1 3 3 3 2 tRNA synthetases class I (K) Abhydro_lipase PF04083.11 gi|312136697|ref|YP_004004034.1| - 0.088 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Toxin_52 PF15605.1 gi|312136698|ref|YP_004004035.1| - 0.0051 16.6 1.9 0.0064 16.3 0.3 1.7 1 1 1 2 2 2 1 Putative toxin 52 Fmp27_WPPW PF10359.4 gi|312136698|ref|YP_004004035.1| - 0.0076 14.7 3.6 0.0089 14.4 2.5 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Sec8_exocyst PF04048.9 gi|312136698|ref|YP_004004035.1| - 0.024 14.2 2.1 0.024 14.2 1.5 1.7 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain SieB PF14163.1 gi|312136698|ref|YP_004004035.1| - 0.069 12.7 0.3 0.069 12.7 0.2 1.9 2 0 0 2 2 2 0 Superinfection exclusion protein B BBP1_C PF15272.1 gi|312136698|ref|YP_004004035.1| - 0.073 12.6 9.9 0.1 12.1 6.9 1.2 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal Spc7 PF08317.6 gi|312136698|ref|YP_004004035.1| - 0.13 10.8 9.2 0.18 10.4 6.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|312136698|ref|YP_004004035.1| - 0.27 11.5 6.2 1.3 9.4 4.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF4200 PF13863.1 gi|312136698|ref|YP_004004035.1| - 0.77 9.7 9.5 1.9 8.4 3.4 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) Striatin PF08232.7 gi|312136698|ref|YP_004004035.1| - 0.9 9.8 5.8 1.4 9.1 4.0 1.3 1 1 0 1 1 1 0 Striatin family OEP PF02321.13 gi|312136698|ref|YP_004004035.1| - 1.5 8.3 6.9 2.2 7.8 4.8 1.3 1 1 0 1 1 1 0 Outer membrane efflux protein DUF1640 PF07798.6 gi|312136698|ref|YP_004004035.1| - 1.6 8.7 7.8 3.3 7.7 5.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DivIC PF04977.10 gi|312136698|ref|YP_004004035.1| - 2.5 7.6 12.1 2 7.9 0.5 2.6 1 1 0 2 2 2 0 Septum formation initiator Atg14 PF10186.4 gi|312136698|ref|YP_004004035.1| - 3 6.7 8.3 6.9 5.5 5.8 1.6 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FlaC_arch PF05377.6 gi|312136698|ref|YP_004004035.1| - 4.3 7.3 6.2 1.2e+02 2.6 4.3 2.7 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) AAA_23 PF13476.1 gi|312136698|ref|YP_004004035.1| - 6 7.1 12.7 44 4.3 8.8 2.0 1 1 0 1 1 1 0 AAA domain FtsJ PF01728.14 gi|312136699|ref|YP_004004036.1| - 1.7e-58 197.6 0.0 1.9e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|312136699|ref|YP_004004036.1| - 2.2e-12 46.7 0.1 1.2e-11 44.4 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312136699|ref|YP_004004036.1| - 7.8e-05 23.2 0.1 0.003 18.1 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312136699|ref|YP_004004036.1| - 0.0002 21.1 0.0 0.00062 19.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|312136699|ref|YP_004004036.1| - 0.00058 19.2 0.1 0.00077 18.8 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase Ubie_methyltran PF01209.13 gi|312136699|ref|YP_004004036.1| - 0.00083 18.5 0.2 0.0045 16.1 0.2 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family NSP13 PF06460.7 gi|312136699|ref|YP_004004036.1| - 0.0027 16.6 0.1 0.0077 15.1 0.0 1.6 1 1 0 2 2 2 1 Coronavirus NSP13 Nol1_Nop2_Fmu PF01189.12 gi|312136699|ref|YP_004004036.1| - 0.0032 16.8 0.0 0.0076 15.6 0.0 1.6 2 0 0 2 2 2 1 NOL1/NOP2/sun family Methyltrans_Mon PF14314.1 gi|312136699|ref|YP_004004036.1| - 0.0085 13.9 0.1 0.011 13.6 0.0 1.1 1 0 0 1 1 1 1 Virus-capping methyltransferase MTS PF05175.9 gi|312136699|ref|YP_004004036.1| - 0.0089 15.4 0.0 0.019 14.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain UPF0146 PF03686.8 gi|312136699|ref|YP_004004036.1| - 0.02 14.7 0.2 0.17 11.7 0.0 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0146) PCMT PF01135.14 gi|312136699|ref|YP_004004036.1| - 0.035 13.6 0.2 0.11 11.9 0.1 1.9 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N PF00107.21 gi|312136699|ref|YP_004004036.1| - 0.035 13.6 0.6 0.31 10.6 0.3 2.4 2 1 0 2 2 2 0 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|312136699|ref|YP_004004036.1| - 0.071 13.1 0.0 0.17 11.8 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain Fibrillarin PF01269.12 gi|312136699|ref|YP_004004036.1| - 0.093 11.6 0.1 0.17 10.7 0.0 1.6 2 0 0 2 2 2 0 Fibrillarin PRESAN PF09687.5 gi|312136699|ref|YP_004004036.1| - 0.39 10.7 4.4 0.73 9.9 0.5 2.4 3 0 0 3 3 2 0 Plasmodium RESA N-terminal Metallophos_2 PF12850.2 gi|312136700|ref|YP_004004037.1| - 2.5e-30 105.3 0.0 2.8e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312136700|ref|YP_004004037.1| - 4.2e-11 42.6 0.3 3.3e-09 36.4 0.2 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FeoA PF04023.9 gi|312136701|ref|YP_004004038.1| - 4.5e-17 61.7 1.2 5e-17 61.6 0.9 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|312136702|ref|YP_004004039.1| - 6.3e-58 194.4 0.8 1e-57 193.8 0.6 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|312136702|ref|YP_004004039.1| - 9e-31 106.0 19.6 5.6e-16 58.3 5.7 2.9 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|312136702|ref|YP_004004039.1| - 3.4e-16 59.2 0.2 5.8e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|312136702|ref|YP_004004039.1| - 4.3e-11 42.0 1.4 4.3e-11 42.0 0.9 3.3 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus Miro PF08477.8 gi|312136702|ref|YP_004004039.1| - 6.8e-06 26.5 0.0 1.2e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|312136702|ref|YP_004004039.1| - 1.3e-05 24.4 0.1 3.3e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 AIG1 family SRPRB PF09439.5 gi|312136702|ref|YP_004004039.1| - 1.9e-05 23.9 0.0 3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|312136702|ref|YP_004004039.1| - 0.00036 20.0 0.4 0.0019 17.6 0.3 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|312136702|ref|YP_004004039.1| - 0.0039 16.7 0.2 0.015 14.8 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|312136702|ref|YP_004004039.1| - 0.0055 16.1 0.1 0.025 13.9 0.0 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.16 gi|312136702|ref|YP_004004039.1| - 0.019 14.2 0.1 0.086 12.0 0.1 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family T2SF PF00482.18 gi|312136703|ref|YP_004004040.1| - 9.5e-21 73.9 1.0 9.5e-21 73.9 0.7 3.1 2 2 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF1700 PF08006.6 gi|312136703|ref|YP_004004040.1| - 0.00053 19.3 6.5 0.076 12.2 3.9 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1700) DUF2207 PF09972.4 gi|312136703|ref|YP_004004040.1| - 0.0023 16.5 4.5 0.28 9.7 1.5 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) OAD_gamma PF04277.8 gi|312136703|ref|YP_004004040.1| - 0.028 14.7 1.4 0.028 14.7 0.9 3.7 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain T2SE PF00437.15 gi|312136704|ref|YP_004004041.1| - 2e-63 213.8 0.0 3.5e-63 213.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|312136704|ref|YP_004004041.1| - 0.035 13.2 0.0 0.078 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|312136704|ref|YP_004004041.1| - 0.059 12.8 2.1 0.065 12.6 0.0 2.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|312136704|ref|YP_004004041.1| - 0.075 13.8 6.4 1.9 9.3 0.0 3.4 3 1 0 3 3 3 0 AAA domain QueC PF06508.8 gi|312136706|ref|YP_004004043.1| - 1.9e-09 37.1 0.3 5.4e-09 35.6 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|312136706|ref|YP_004004043.1| - 5.7e-09 35.8 0.0 1.8e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|312136706|ref|YP_004004043.1| - 5.1e-08 32.3 1.7 3.8e-07 29.4 0.1 2.1 1 1 1 2 2 2 1 Arginosuccinate synthase ATP_bind_3 PF01171.15 gi|312136706|ref|YP_004004043.1| - 5.8e-07 29.1 0.2 2.2e-05 24.0 0.0 2.4 1 1 1 2 2 2 1 PP-loop family NAD_synthase PF02540.12 gi|312136706|ref|YP_004004043.1| - 4.5e-05 22.4 0.2 0.0002 20.3 0.0 2.0 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|312136706|ref|YP_004004043.1| - 0.001 17.7 0.8 0.0019 16.8 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|312136706|ref|YP_004004043.1| - 0.002 17.9 0.4 0.0052 16.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family DUF1957 PF09210.6 gi|312136706|ref|YP_004004043.1| - 0.026 14.5 0.2 0.073 13.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) Herpes_UL46 PF03387.9 gi|312136706|ref|YP_004004043.1| - 0.068 11.3 0.1 0.095 10.8 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL46 protein DUF2680 PF10925.3 gi|312136706|ref|YP_004004043.1| - 0.15 11.9 3.6 0.86 9.5 0.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) YcaO PF02624.11 gi|312136707|ref|YP_004004044.1| - 1.5e-90 304.0 0.0 2.4e-90 303.4 0.0 1.3 1 0 0 1 1 1 1 YcaO-like family PduV-EutP PF10662.4 gi|312136707|ref|YP_004004044.1| - 0.004 16.6 0.2 0.8 9.1 0.0 2.7 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation CPSase_L_D3 PF02787.14 gi|312136707|ref|YP_004004044.1| - 0.07 12.9 1.4 0.25 11.1 0.0 2.5 3 0 0 3 3 3 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Peptidase_M50 PF02163.17 gi|312136708|ref|YP_004004045.1| - 5e-12 45.1 25.7 4.1e-11 42.2 17.8 2.4 1 1 0 1 1 1 1 Peptidase family M50 PhoU PF01895.14 gi|312136709|ref|YP_004004046.1| - 3.9e-28 97.7 11.9 8.3e-16 58.2 0.2 2.3 2 0 0 2 2 2 2 PhoU domain HTH_24 PF13412.1 gi|312136709|ref|YP_004004046.1| - 2.3e-08 33.2 0.8 1.2e-07 30.9 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|312136709|ref|YP_004004046.1| - 2.1e-07 30.5 1.1 1.6e-05 24.5 0.1 2.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|312136709|ref|YP_004004046.1| - 8e-06 25.4 0.0 2.3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|312136709|ref|YP_004004046.1| - 2e-05 24.1 0.1 8.1e-05 22.2 0.1 2.1 2 0 0 2 2 1 1 MarR family Rrf2 PF02082.15 gi|312136709|ref|YP_004004046.1| - 7.3e-05 22.8 0.2 0.00023 21.1 0.2 1.9 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|312136709|ref|YP_004004046.1| - 8.2e-05 22.3 0.0 0.0003 20.5 0.0 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|312136709|ref|YP_004004046.1| - 0.00016 21.2 0.6 0.00037 20.1 0.0 1.9 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|312136709|ref|YP_004004046.1| - 0.0011 18.5 0.1 0.0034 16.9 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|312136709|ref|YP_004004046.1| - 0.0011 18.5 0.2 0.0037 16.8 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_3 PF01381.17 gi|312136709|ref|YP_004004046.1| - 0.0027 17.4 0.2 0.011 15.5 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|312136709|ref|YP_004004046.1| - 0.003 16.8 0.0 0.012 14.9 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 BDV_P24 PF06595.6 gi|312136709|ref|YP_004004046.1| - 0.0069 16.1 1.6 2.4 7.8 0.2 2.2 2 0 0 2 2 2 2 Borna disease virus P24 protein EAP30 PF04157.11 gi|312136709|ref|YP_004004046.1| - 0.011 14.8 5.4 0.15 11.1 0.0 3.1 2 1 1 3 3 3 0 EAP30/Vps36 family B-block_TFIIIC PF04182.7 gi|312136709|ref|YP_004004046.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_19 PF12844.2 gi|312136709|ref|YP_004004046.1| - 0.034 14.1 0.8 0.42 10.7 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|312136709|ref|YP_004004046.1| - 0.041 13.6 0.1 0.12 12.1 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|312136709|ref|YP_004004046.1| - 0.044 13.9 0.0 0.15 12.2 0.0 1.9 1 0 0 1 1 1 0 KorB domain DUF387 PF04079.11 gi|312136709|ref|YP_004004046.1| - 0.065 12.6 1.3 0.11 11.8 0.0 2.1 3 0 0 3 3 2 0 Putative transcriptional regulators (Ypuh-like) HTH_28 PF13518.1 gi|312136709|ref|YP_004004046.1| - 0.066 13.2 0.0 0.26 11.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|312136709|ref|YP_004004046.1| - 0.067 13.4 0.0 0.47 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|312136709|ref|YP_004004046.1| - 0.079 12.5 0.0 0.32 10.5 0.0 2.0 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|312136709|ref|YP_004004046.1| - 0.08 13.2 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|312136709|ref|YP_004004046.1| - 0.092 12.2 4.5 0.12 11.8 0.1 2.9 3 0 0 3 3 3 0 TFIIE alpha subunit HTH_10 PF04967.7 gi|312136709|ref|YP_004004046.1| - 0.094 12.3 0.0 2 8.0 0.0 2.8 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|312136709|ref|YP_004004046.1| - 0.097 12.1 0.0 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 NUMOD1 PF07453.8 gi|312136709|ref|YP_004004046.1| - 0.099 12.5 1.1 1.3 8.9 0.0 3.2 4 0 0 4 4 2 0 NUMOD1 domain HTH_7 PF02796.10 gi|312136709|ref|YP_004004046.1| - 0.12 12.2 0.7 0.33 10.8 0.1 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase FaeA PF04703.7 gi|312136709|ref|YP_004004046.1| - 0.12 12.5 0.1 0.32 11.1 0.1 1.7 1 0 0 1 1 1 0 FaeA-like protein PCI PF01399.22 gi|312136709|ref|YP_004004046.1| - 0.13 12.6 0.1 0.13 12.6 0.1 2.7 3 0 0 3 3 3 0 PCI domain HTH_45 PF14947.1 gi|312136709|ref|YP_004004046.1| - 0.17 11.7 4.4 0.82 9.5 0.5 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix RGS PF00615.14 gi|312136709|ref|YP_004004046.1| - 1.4 9.0 6.7 0.31 11.1 0.2 2.5 2 1 0 2 2 2 0 Regulator of G protein signaling domain MCM_N PF14551.1 gi|312136709|ref|YP_004004046.1| - 2.8 8.4 8.3 10 6.6 1.3 2.3 1 1 1 2 2 2 0 MCM N-terminal domain Colicin_V PF02674.11 gi|312136710|ref|YP_004004047.1| - 0.0034 17.2 9.4 0.31 10.8 0.6 2.4 2 1 0 2 2 2 2 Colicin V production protein UPF0233 PF06781.7 gi|312136710|ref|YP_004004047.1| - 0.042 13.4 0.2 0.042 13.4 0.1 2.3 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0233) Cation_efflux PF01545.16 gi|312136710|ref|YP_004004047.1| - 1.6 7.7 8.3 0.34 9.9 2.7 1.9 1 1 1 2 2 2 0 Cation efflux family DsbB PF02600.11 gi|312136710|ref|YP_004004047.1| - 1.8 8.3 6.2 0.41 10.4 1.1 2.1 2 1 0 2 2 2 0 Disulfide bond formation protein DsbB Metallophos_2 PF12850.2 gi|312136711|ref|YP_004004048.1| - 1e-15 57.9 0.2 1.7e-15 57.2 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312136711|ref|YP_004004048.1| - 7.1e-14 51.6 6.2 1.4e-13 50.7 4.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|312136711|ref|YP_004004048.1| - 0.041 13.0 0.1 0.48 9.5 0.1 2.2 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily PGA_cap PF09587.5 gi|312136711|ref|YP_004004048.1| - 0.075 12.3 0.0 0.16 11.2 0.0 1.5 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap Aminotran_5 PF00266.14 gi|312136712|ref|YP_004004049.1| - 1e-45 156.0 0.1 1.2e-45 155.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|312136712|ref|YP_004004049.1| - 7.1e-05 21.2 0.1 0.00011 20.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|312136712|ref|YP_004004049.1| - 0.0013 17.7 0.1 0.026 13.4 0.1 2.3 2 1 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|312136712|ref|YP_004004049.1| - 0.095 11.7 0.6 0.91 8.4 0.4 2.1 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family MAF_flag10 PF01973.13 gi|312136713|ref|YP_004004050.1| - 3.8e-44 150.2 0.7 5.1e-44 149.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|312136713|ref|YP_004004050.1| - 0.00064 19.3 0.1 0.02 14.4 0.0 2.3 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain CST-I PF06002.7 gi|312136713|ref|YP_004004050.1| - 0.0014 18.0 0.3 0.0052 16.1 0.0 2.0 2 0 0 2 2 2 1 Alpha-2,3-sialyltransferase (CST-I) PK_C PF02887.11 gi|312136713|ref|YP_004004050.1| - 0.017 14.6 0.2 21 4.7 0.1 3.1 3 0 0 3 3 3 0 Pyruvate kinase, alpha/beta domain CENP-L PF13092.1 gi|312136713|ref|YP_004004050.1| - 0.053 13.3 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Kinetochore complex Sim4 subunit Fta1 Alba PF01918.16 gi|312136713|ref|YP_004004050.1| - 0.058 12.9 0.1 0.34 10.5 0.0 2.2 2 1 0 2 2 2 0 Alba Glyco_hydro_46 PF01374.13 gi|312136713|ref|YP_004004050.1| - 0.081 12.4 0.2 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 46 Archease PF01951.11 gi|312136714|ref|YP_004004051.1| - 4.7e-44 149.6 3.6 5.2e-44 149.5 2.5 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|312136714|ref|YP_004004051.1| - 0.01 15.4 0.2 0.025 14.2 0.2 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) DUF3839 PF12943.2 gi|312136714|ref|YP_004004051.1| - 0.022 13.8 0.7 0.029 13.5 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) HR1 PF02185.11 gi|312136714|ref|YP_004004051.1| - 0.071 12.8 0.1 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Hr1 repeat DUF2018 PF09442.5 gi|312136714|ref|YP_004004051.1| - 0.081 13.4 2.2 0.15 12.6 0.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2018) RtcB PF01139.12 gi|312136715|ref|YP_004004052.1| - 1.3e-156 521.8 0.2 1.5e-156 521.6 0.2 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB PNP_UDP_1 PF01048.15 gi|312136716|ref|YP_004004053.1| - 3.3e-48 163.6 0.0 3.8e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily YbjQ_1 PF01906.12 gi|312136717|ref|YP_004004054.1| - 2.8e-35 120.9 0.9 4.3e-35 120.3 0.6 1.3 1 0 0 1 1 1 1 Putative heavy-metal-binding zinc_ribbon_2 PF13240.1 gi|312136717|ref|YP_004004054.1| - 2.6e-08 33.0 7.0 4.5e-08 32.3 4.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|312136717|ref|YP_004004054.1| - 4.8e-08 31.9 4.7 7.5e-08 31.3 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|312136717|ref|YP_004004054.1| - 3.6e-07 29.8 0.4 5.9e-07 29.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|312136717|ref|YP_004004054.1| - 5.5e-05 22.7 1.9 9.5e-05 22.0 1.3 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 eRF1_3 PF03465.10 gi|312136717|ref|YP_004004054.1| - 0.00038 20.6 0.6 0.16 12.2 0.0 2.6 2 1 0 2 2 2 1 eRF1 domain 3 Nudix_N_2 PF14803.1 gi|312136717|ref|YP_004004054.1| - 0.001 18.7 2.2 0.37 10.5 0.0 2.3 2 0 0 2 2 2 2 Nudix N-terminal NMD3 PF04981.8 gi|312136717|ref|YP_004004054.1| - 0.0037 16.4 3.4 0.22 10.6 0.7 2.4 3 0 0 3 3 3 1 NMD3 family zinc-ribbons_6 PF07191.7 gi|312136717|ref|YP_004004054.1| - 0.0047 16.6 1.0 0.0078 15.9 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|312136717|ref|YP_004004054.1| - 0.0049 16.1 1.8 0.01 15.1 1.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding ADK_lid PF05191.9 gi|312136717|ref|YP_004004054.1| - 0.0078 15.8 3.1 0.025 14.2 2.1 1.8 1 1 0 1 1 1 1 Adenylate kinase, active site lid SeleniumBinding PF11524.3 gi|312136717|ref|YP_004004054.1| - 0.015 15.4 0.5 0.2 11.8 0.0 2.4 2 1 0 2 2 2 0 Selenium binding protein NOB1_Zn_bind PF08772.6 gi|312136717|ref|YP_004004054.1| - 0.02 14.6 2.5 0.048 13.4 1.7 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.2 gi|312136717|ref|YP_004004054.1| - 0.021 14.8 0.2 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF556 PF04476.8 gi|312136717|ref|YP_004004054.1| - 0.057 12.6 0.0 0.068 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF556) Hjc PF01870.13 gi|312136717|ref|YP_004004054.1| - 0.082 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DUF2116 PF09889.4 gi|312136717|ref|YP_004004054.1| - 0.095 12.5 0.8 0.19 11.5 0.6 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HypA PF01155.14 gi|312136717|ref|YP_004004054.1| - 0.26 10.9 5.6 1.5 8.5 0.7 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|312136717|ref|YP_004004054.1| - 0.38 10.5 5.3 7 6.5 0.2 2.5 1 1 1 2 2 2 0 YhfH-like protein zf-C2H2 PF00096.21 gi|312136717|ref|YP_004004054.1| - 0.62 10.5 2.9 1.1 9.7 0.6 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type Cript PF10235.4 gi|312136717|ref|YP_004004054.1| - 1 9.7 5.7 0.52 10.6 2.4 1.6 2 0 0 2 2 2 0 Microtubule-associated protein CRIPT DUF2321 PF10083.4 gi|312136717|ref|YP_004004054.1| - 1.1 8.7 4.1 1.6 8.2 0.3 2.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) HMD PF03201.11 gi|312136718|ref|YP_004004055.1| - 7.6e-36 121.9 2.2 1.3e-35 121.1 1.5 1.4 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.10 gi|312136718|ref|YP_004004055.1| - 1.2e-06 28.4 0.1 3.1e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|312136718|ref|YP_004004055.1| - 0.00014 21.2 0.1 0.00033 20.0 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|312136718|ref|YP_004004055.1| - 0.00024 21.4 1.0 0.00087 19.6 0.1 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.15 gi|312136718|ref|YP_004004055.1| - 0.036 13.9 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Amidohydro_1 PF01979.15 gi|312136719|ref|YP_004004056.1| - 1.7e-48 166.0 0.6 2.1e-48 165.7 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|312136719|ref|YP_004004056.1| - 3.5e-15 56.7 0.0 2e-06 28.0 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|312136719|ref|YP_004004056.1| - 4.8e-12 45.5 2.3 1.3e-11 44.0 0.1 2.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|312136719|ref|YP_004004056.1| - 6.3e-06 25.6 0.5 0.046 12.9 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family HMGL-like PF00682.14 gi|312136719|ref|YP_004004056.1| - 0.00051 19.7 1.2 0.01 15.4 0.0 2.4 2 1 0 2 2 2 1 HMGL-like DUF126 PF01989.11 gi|312136720|ref|YP_004004057.1| - 7.4e-39 131.3 0.2 1.4e-38 130.4 0.2 1.4 2 0 0 2 2 2 1 Protein of unknown function DUF126 Cytotoxic PF09000.5 gi|312136720|ref|YP_004004057.1| - 0.077 13.0 0.1 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Cytotoxic TruD PF01142.13 gi|312136721|ref|YP_004004058.1| - 4.3e-121 404.1 0.0 4.8e-121 403.9 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Rad17 PF03215.10 gi|312136722|ref|YP_004004059.1| - 0.017 13.8 0.4 0.018 13.7 0.3 1.0 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC2_membrane PF01061.19 gi|312136723|ref|YP_004004060.1| - 8.2e-40 136.2 24.9 8.2e-40 136.2 17.3 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|312136723|ref|YP_004004060.1| - 6.1e-18 64.9 35.8 6.1e-18 64.9 24.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|312136723|ref|YP_004004060.1| - 1.8e-07 30.5 35.8 3e-07 29.8 24.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|312136723|ref|YP_004004060.1| - 1.3e-06 27.5 28.8 3.6e-06 26.0 20.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|312136724|ref|YP_004004061.1| - 1.2e-30 106.5 0.0 2.3e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136724|ref|YP_004004061.1| - 6.4e-15 55.8 4.8 2.9e-13 50.4 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|312136724|ref|YP_004004061.1| - 3.2e-09 36.3 10.3 3.3e-05 23.1 0.0 3.1 2 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|312136724|ref|YP_004004061.1| - 1.3e-07 32.1 3.8 5.9e-07 30.0 2.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|312136724|ref|YP_004004061.1| - 2.1e-05 23.9 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|312136724|ref|YP_004004061.1| - 2.8e-05 24.5 3.1 8e-05 23.0 2.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|312136724|ref|YP_004004061.1| - 3.7e-05 23.0 0.0 0.019 14.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|312136724|ref|YP_004004061.1| - 0.00017 21.8 0.0 0.0025 18.0 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|312136724|ref|YP_004004061.1| - 0.00079 19.0 0.5 0.0034 17.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|312136724|ref|YP_004004061.1| - 0.0012 18.9 0.3 0.0063 16.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|312136724|ref|YP_004004061.1| - 0.0015 18.3 0.2 0.43 10.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|312136724|ref|YP_004004061.1| - 0.0022 17.7 0.8 0.0052 16.5 0.0 2.0 1 1 1 2 2 2 1 Archaeal ATPase MutS_V PF00488.16 gi|312136724|ref|YP_004004061.1| - 0.0038 16.6 0.2 1.8 7.9 0.1 2.2 2 0 0 2 2 2 2 MutS domain V AAA_17 PF13207.1 gi|312136724|ref|YP_004004061.1| - 0.0042 17.8 2.1 0.029 15.1 1.5 2.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|312136724|ref|YP_004004061.1| - 0.017 14.2 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|312136724|ref|YP_004004061.1| - 0.018 14.7 0.8 0.051 13.2 0.0 2.1 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|312136724|ref|YP_004004061.1| - 0.024 14.0 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|312136724|ref|YP_004004061.1| - 0.037 13.1 0.1 0.14 11.3 0.0 1.9 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|312136724|ref|YP_004004061.1| - 0.041 13.6 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|312136724|ref|YP_004004061.1| - 0.045 13.7 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|312136724|ref|YP_004004061.1| - 0.046 13.1 0.2 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|312136724|ref|YP_004004061.1| - 0.071 12.6 0.6 0.16 11.5 0.0 1.9 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.1 gi|312136724|ref|YP_004004061.1| - 0.074 12.4 0.0 0.26 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|312136724|ref|YP_004004061.1| - 0.096 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|312136724|ref|YP_004004061.1| - 0.1 13.1 0.4 0.4 11.1 0.0 2.2 2 2 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|312136724|ref|YP_004004061.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|312136724|ref|YP_004004061.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|312136724|ref|YP_004004061.1| - 0.12 12.2 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|312136724|ref|YP_004004061.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF4325 PF14213.1 gi|312136724|ref|YP_004004061.1| - 1.3 8.7 8.2 0.14 11.8 1.4 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF4325) Lactamase_B PF00753.22 gi|312136725|ref|YP_004004062.1| - 3.9e-24 85.3 1.8 9.4e-24 84.1 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|312136725|ref|YP_004004062.1| - 1.6e-05 24.5 0.2 2.4e-05 23.9 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3970 PF13113.1 gi|312136725|ref|YP_004004062.1| - 0.1 12.2 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) Rad50_zn_hook PF04423.9 gi|312136726|ref|YP_004004063.1| - 0.0036 16.7 0.5 0.012 15.0 0.1 2.1 2 0 0 2 2 2 1 Rad50 zinc hook motif Mito_fiss_Elm1 PF06258.6 gi|312136726|ref|YP_004004063.1| - 0.055 12.3 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial fission ELM1 DUF2602 PF10782.4 gi|312136726|ref|YP_004004063.1| - 1.2 9.0 5.3 0.38 10.6 0.4 2.7 3 1 1 4 4 4 0 Protein of unknown function (DUF2602) DUF2099 PF09872.4 gi|312136727|ref|YP_004004064.1| - 4.4e-106 353.6 6.7 5.3e-106 353.3 4.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) HTH_45 PF14947.1 gi|312136727|ref|YP_004004064.1| - 0.011 15.5 0.2 0.049 13.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix CBS PF00571.23 gi|312136728|ref|YP_004004065.1| - 9.5e-32 108.5 2.2 1.2e-15 56.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_S55 PF05580.7 gi|312136728|ref|YP_004004065.1| - 0.08 12.3 2.8 0.36 10.2 0.1 2.2 1 1 0 2 2 2 0 SpoIVB peptidase S55 Ribosomal_L9_C PF03948.9 gi|312136728|ref|YP_004004065.1| - 0.088 12.9 0.1 3.5 7.7 0.0 2.4 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain ThiC PF01964.13 gi|312136729|ref|YP_004004066.1| - 1.7e-190 633.0 2.8 1.9e-190 632.8 1.9 1.0 1 0 0 1 1 1 1 ThiC family DNA_ligase_A_M PF01068.16 gi|312136730|ref|YP_004004067.1| - 1.3e-56 191.1 1.1 2.4e-56 190.3 0.7 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|312136730|ref|YP_004004067.1| - 4.3e-51 173.2 5.4 8.5e-51 172.2 2.0 2.4 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|312136730|ref|YP_004004067.1| - 1.4e-18 67.0 0.0 7.4e-18 64.7 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DUF2522 PF10747.4 gi|312136730|ref|YP_004004067.1| - 0.28 11.2 1.6 0.77 9.8 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2522) Fer4_6 PF12837.2 gi|312136731|ref|YP_004004068.1| - 4.4e-11 42.1 11.4 1.8e-05 24.3 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136731|ref|YP_004004068.1| - 1.1e-10 41.7 10.2 1.4e-10 41.3 7.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312136731|ref|YP_004004068.1| - 5.7e-10 38.3 17.3 2.1e-06 27.0 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136731|ref|YP_004004068.1| - 8.9e-09 35.0 23.6 2.5e-07 30.3 8.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312136731|ref|YP_004004068.1| - 2.1e-08 33.9 8.0 4.3e-08 32.8 5.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136731|ref|YP_004004068.1| - 3.1e-08 33.0 13.9 0.00041 20.1 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312136731|ref|YP_004004068.1| - 7.4e-07 29.4 8.7 0.0027 17.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136731|ref|YP_004004068.1| - 1.3e-06 28.5 14.9 0.0013 18.8 2.2 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136731|ref|YP_004004068.1| - 1.4e-06 28.8 11.8 1.3e-05 25.8 8.4 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|312136731|ref|YP_004004068.1| - 4.6e-06 26.5 22.0 2.4e-05 24.2 8.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136731|ref|YP_004004068.1| - 6.6e-06 26.5 5.0 0.035 14.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|312136731|ref|YP_004004068.1| - 7.8e-06 25.8 12.4 0.0032 17.6 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312136731|ref|YP_004004068.1| - 3.2e-05 24.2 7.4 0.025 14.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136731|ref|YP_004004068.1| - 0.0033 17.8 16.8 0.17 12.5 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|312136731|ref|YP_004004068.1| - 0.0049 17.2 9.4 0.055 13.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain MDH PF02315.11 gi|312136731|ref|YP_004004068.1| - 6.1 6.8 9.5 1.7 8.6 1.4 2.1 1 1 1 2 2 2 0 Methanol dehydrogenase beta subunit Asparaginase PF00710.15 gi|312136732|ref|YP_004004069.1| - 2.2e-99 332.3 0.0 2.6e-99 332.0 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|312136732|ref|YP_004004069.1| - 0.0062 15.9 0.1 0.11 11.8 0.0 2.6 2 1 1 3 3 3 1 Periplasmic binding protein domain GatB_N PF02934.10 gi|312136733|ref|YP_004004070.1| - 3.7e-80 268.8 1.2 8.6e-80 267.6 0.9 1.5 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|312136733|ref|YP_004004070.1| - 1.2e-26 93.2 7.1 3.7e-26 91.6 4.9 1.9 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|312136733|ref|YP_004004070.1| - 9.3e-14 51.3 1.2 5.4e-13 48.9 0.0 2.9 4 0 0 4 4 4 1 GAD domain YqeY PF09424.5 gi|312136733|ref|YP_004004070.1| - 6.2e-08 32.6 0.9 3e-07 30.3 0.6 2.2 1 0 0 1 1 1 1 Yqey-like protein RINT1_TIP1 PF04437.8 gi|312136733|ref|YP_004004070.1| - 0.0063 15.1 1.1 0.01 14.4 0.8 1.3 1 0 0 1 1 1 1 RINT-1 / TIP-1 family Glycos_trans_3N PF02885.12 gi|312136733|ref|YP_004004070.1| - 0.011 15.2 3.6 10 5.8 0.1 3.5 2 1 1 3 3 3 0 Glycosyl transferase family, helical bundle domain Pyr_redox_2 PF07992.9 gi|312136734|ref|YP_004004071.1| - 4.1e-31 108.4 0.0 8.7e-31 107.3 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|312136734|ref|YP_004004071.1| - 2.3e-19 70.2 3.4 1.4e-13 51.3 0.0 2.8 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|312136734|ref|YP_004004071.1| - 2.7e-18 66.1 0.3 2.7e-18 66.1 0.2 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312136734|ref|YP_004004071.1| - 2.1e-08 33.0 10.1 8.4e-05 21.2 0.5 3.8 3 1 1 4 4 4 3 HI0933-like protein GIDA PF01134.17 gi|312136734|ref|YP_004004071.1| - 5.9e-08 31.9 14.8 0.011 14.6 0.2 4.7 3 2 2 5 5 5 4 Glucose inhibited division protein A Thi4 PF01946.12 gi|312136734|ref|YP_004004071.1| - 2.4e-06 26.8 5.7 6.7e-05 22.0 0.7 2.6 2 2 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|312136734|ref|YP_004004071.1| - 2.9e-06 26.4 10.0 0.01 14.7 2.0 3.7 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|312136734|ref|YP_004004071.1| - 4.1e-06 26.1 3.0 0.00016 20.9 0.2 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|312136734|ref|YP_004004071.1| - 9.1e-06 25.6 1.2 0.00023 21.1 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|312136734|ref|YP_004004071.1| - 4.5e-05 22.4 9.5 7.8e-05 21.6 1.7 3.6 3 1 1 4 4 4 1 FAD binding domain K_oxygenase PF13434.1 gi|312136734|ref|YP_004004071.1| - 4.7e-05 22.4 2.0 0.02 13.8 0.1 3.3 1 1 2 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|312136734|ref|YP_004004071.1| - 6e-05 22.2 1.0 0.0069 15.4 0.6 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|312136734|ref|YP_004004071.1| - 0.00013 22.1 4.3 0.00068 19.8 0.2 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|312136734|ref|YP_004004071.1| - 0.00092 18.2 2.0 2.8 6.7 0.0 3.2 3 0 0 3 3 3 2 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|312136734|ref|YP_004004071.1| - 0.0071 16.1 2.0 0.64 9.7 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding Oxidored_nitro PF00148.14 gi|312136734|ref|YP_004004071.1| - 0.0093 14.6 0.1 0.63 8.6 0.0 2.1 1 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase Shikimate_DH PF01488.15 gi|312136734|ref|YP_004004071.1| - 0.14 12.2 4.5 0.16 12.0 0.1 2.7 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|312136734|ref|YP_004004071.1| - 0.22 10.1 1.3 9.2 4.7 0.4 2.2 2 0 0 2 2 2 0 Tryptophan halogenase DUF4252 PF14060.1 gi|312136734|ref|YP_004004071.1| - 0.23 11.0 4.7 0.32 10.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4252) GATase PF00117.23 gi|312136735|ref|YP_004004072.1| - 6.4e-43 146.4 0.2 7.1e-43 146.2 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|312136735|ref|YP_004004072.1| - 4.3e-13 49.2 0.0 1.2e-12 47.7 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 DUF257 PF03192.8 gi|312136735|ref|YP_004004072.1| - 0.15 11.2 1.8 0.31 10.3 0.2 1.9 1 1 1 2 2 2 0 Pyrococcus protein of unknown function, DUF257 GMP_synt_C PF00958.17 gi|312136736|ref|YP_004004073.1| - 7.2e-33 112.1 0.1 1.6e-32 111.0 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|312136736|ref|YP_004004073.1| - 6e-15 54.7 1.3 4e-08 32.4 0.0 2.5 3 0 0 3 3 3 2 NAD synthase tRNA_Me_trans PF03054.11 gi|312136736|ref|YP_004004073.1| - 5.8e-06 25.0 0.0 0.00052 18.6 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.9 gi|312136736|ref|YP_004004073.1| - 1.2e-05 24.9 0.0 3.8e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|312136736|ref|YP_004004073.1| - 2e-05 23.9 0.0 0.00091 18.5 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|312136736|ref|YP_004004073.1| - 7.5e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|312136736|ref|YP_004004073.1| - 8.6e-05 22.1 0.0 0.00014 21.4 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|312136736|ref|YP_004004073.1| - 0.009 15.8 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|312136736|ref|YP_004004073.1| - 0.023 13.7 0.0 0.049 12.6 0.0 1.7 1 1 0 1 1 1 0 Arginosuccinate synthase DegT_DnrJ_EryC1 PF01041.12 gi|312136737|ref|YP_004004074.1| - 3.8e-08 32.7 0.0 7.4e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.8 gi|312136737|ref|YP_004004074.1| - 8.5e-05 21.4 0.1 0.00025 19.8 0.0 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|312136737|ref|YP_004004074.1| - 0.0022 16.3 0.0 0.0033 15.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Dna2 PF08696.6 gi|312136737|ref|YP_004004074.1| - 0.034 13.4 0.0 0.066 12.5 0.0 1.5 1 0 0 1 1 1 0 DNA replication factor Dna2 MT0933_antitox PF14013.1 gi|312136737|ref|YP_004004074.1| - 0.17 11.9 1.7 0.24 11.5 0.0 2.1 3 0 0 3 3 3 0 MT0933-like antitoxin protein CGI-121 PF08617.5 gi|312136738|ref|YP_004004075.1| - 4.8e-20 71.8 0.2 6.4e-20 71.4 0.1 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 UBA_3 PF09288.5 gi|312136738|ref|YP_004004075.1| - 0.042 13.4 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain DUF2100 PF09873.4 gi|312136738|ref|YP_004004075.1| - 0.3 10.5 4.7 0.12 11.8 0.5 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2100) HMGL-like PF00682.14 gi|312136739|ref|YP_004004076.1| - 9e-71 238.2 0.6 1.6e-70 237.5 0.4 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|312136739|ref|YP_004004076.1| - 3.1e-35 120.8 0.7 7.8e-35 119.5 0.5 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain SpoU_sub_bind PF08032.7 gi|312136739|ref|YP_004004076.1| - 0.057 13.6 0.6 0.27 11.4 0.2 2.4 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding SurA_N_3 PF13624.1 gi|312136739|ref|YP_004004076.1| - 0.078 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 SurA N-terminal domain PP-binding_2 PF14573.1 gi|312136739|ref|YP_004004076.1| - 0.09 12.8 0.4 4.8 7.2 0.1 2.8 2 0 0 2 2 2 0 Acyl-carrier UPF0020 PF01170.13 gi|312136740|ref|YP_004004077.1| - 1.4e-46 158.3 0.0 2.1e-46 157.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|312136740|ref|YP_004004077.1| - 7e-17 61.5 0.0 1e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|312136740|ref|YP_004004077.1| - 8.7e-17 61.3 3.3 1.6e-16 60.4 2.3 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|312136740|ref|YP_004004077.1| - 1.6e-16 60.2 0.6 3.1e-16 59.3 0.4 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|312136740|ref|YP_004004077.1| - 9e-11 41.7 0.0 6.9e-06 25.7 0.0 2.4 2 1 0 2 2 2 2 DNA methylase MTS PF05175.9 gi|312136740|ref|YP_004004077.1| - 9e-11 41.4 0.0 1.5e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|312136740|ref|YP_004004077.1| - 3.6e-09 36.3 0.0 6.3e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|312136740|ref|YP_004004077.1| - 4.5e-08 32.7 0.0 7.7e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|312136740|ref|YP_004004077.1| - 2.3e-06 26.9 0.0 4.8e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase MethyltransfD12 PF02086.10 gi|312136740|ref|YP_004004077.1| - 1.3e-05 24.8 0.2 0.021 14.2 0.0 2.3 1 1 1 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_18 PF12847.2 gi|312136740|ref|YP_004004077.1| - 2e-05 25.1 0.0 3.7e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|312136740|ref|YP_004004077.1| - 8.6e-05 21.8 0.1 0.00015 20.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|312136740|ref|YP_004004077.1| - 0.00047 19.3 0.1 0.00097 18.3 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|312136740|ref|YP_004004077.1| - 0.00096 18.3 0.0 0.0016 17.5 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|312136740|ref|YP_004004077.1| - 0.0048 17.3 0.0 0.0093 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|312136740|ref|YP_004004077.1| - 0.0085 16.4 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase DUF43 PF01861.11 gi|312136740|ref|YP_004004077.1| - 0.0097 14.9 0.1 0.02 13.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF43 Spermine_synth PF01564.12 gi|312136740|ref|YP_004004077.1| - 0.02 13.8 0.5 0.15 10.9 0.1 2.1 2 0 0 2 2 2 0 Spermine/spermidine synthase Methyltransf_12 PF08242.7 gi|312136740|ref|YP_004004077.1| - 0.022 15.2 0.0 0.045 14.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF3712 PF12505.3 gi|312136740|ref|YP_004004077.1| - 0.032 14.2 0.1 0.079 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3712) PCMT PF01135.14 gi|312136740|ref|YP_004004077.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.6 gi|312136740|ref|YP_004004077.1| - 0.16 11.4 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DAO PF01266.19 gi|312136741|ref|YP_004004078.1| - 2.1e-15 56.4 0.0 1.1e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|312136741|ref|YP_004004078.1| - 2.5e-13 49.8 0.0 9.1e-07 28.2 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|312136741|ref|YP_004004078.1| - 1.2e-10 40.8 0.0 1.5e-07 30.6 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|312136741|ref|YP_004004078.1| - 3.9e-10 38.9 0.1 4.7e-06 25.4 0.0 3.1 3 0 0 3 3 3 2 Tryptophan halogenase Thi4 PF01946.12 gi|312136741|ref|YP_004004078.1| - 2.2e-08 33.4 1.4 9.9e-07 28.0 1.0 2.9 1 1 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|312136741|ref|YP_004004078.1| - 9.3e-08 32.3 0.1 2e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|312136741|ref|YP_004004078.1| - 1.2e-07 31.9 3.1 0.0092 16.3 0.0 3.6 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|312136741|ref|YP_004004078.1| - 1.3e-06 28.4 1.7 2.1e-06 27.7 0.3 1.9 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312136741|ref|YP_004004078.1| - 1.4e-06 27.0 1.8 0.00018 20.1 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|312136741|ref|YP_004004078.1| - 7.2e-06 25.9 0.0 1.6e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|312136741|ref|YP_004004078.1| - 6.6e-05 21.9 0.1 0.00063 18.6 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|312136741|ref|YP_004004078.1| - 0.00036 19.7 0.0 0.00065 18.8 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|312136741|ref|YP_004004078.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|312136741|ref|YP_004004078.1| - 0.0018 18.0 0.0 0.0046 16.6 0.0 1.7 2 0 0 2 2 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|312136741|ref|YP_004004078.1| - 0.0019 18.0 1.1 0.15 11.8 0.0 3.5 3 1 0 3 3 3 1 ThiF family DUF624 PF04854.9 gi|312136741|ref|YP_004004078.1| - 0.0049 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF624 TrkA_N PF02254.13 gi|312136741|ref|YP_004004078.1| - 0.0061 16.5 0.3 0.022 14.7 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|312136741|ref|YP_004004078.1| - 0.0063 15.6 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|312136741|ref|YP_004004078.1| - 0.0092 16.2 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain SE PF08491.5 gi|312136741|ref|YP_004004078.1| - 0.012 14.4 0.0 0.023 13.5 0.0 1.5 1 0 0 1 1 1 0 Squalene epoxidase GIDA PF01134.17 gi|312136741|ref|YP_004004078.1| - 0.015 14.1 0.4 0.046 12.5 0.3 1.9 1 1 1 2 2 2 0 Glucose inhibited division protein A NAD_binding_2 PF03446.10 gi|312136741|ref|YP_004004078.1| - 0.041 13.7 0.0 0.081 12.7 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|312136741|ref|YP_004004078.1| - 0.056 13.7 0.4 0.19 11.9 0.2 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|312136741|ref|YP_004004078.1| - 0.067 13.6 0.2 0.5 10.8 0.0 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|312136741|ref|YP_004004078.1| - 0.072 12.5 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA bPH_2 PF03703.9 gi|312136742|ref|YP_004004079.1| - 3.6e-18 65.3 0.1 4.9e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.6 gi|312136742|ref|YP_004004079.1| - 0.0096 15.7 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.1 gi|312136742|ref|YP_004004079.1| - 0.011 15.9 0.3 0.021 15.0 0.0 1.5 2 0 0 2 2 2 0 Bacterial PH domain DUF2418 PF10332.4 gi|312136742|ref|YP_004004079.1| - 0.45 10.8 2.8 1 9.7 1.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2418) ApbE PF02424.10 gi|312136743|ref|YP_004004080.1| - 1.2e-23 83.7 0.3 1.6e-23 83.3 0.2 1.1 1 0 0 1 1 1 1 ApbE family AAA PF00004.24 gi|312136744|ref|YP_004004081.1| - 1e-45 155.1 0.2 4.1e-45 153.2 0.0 2.1 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|312136744|ref|YP_004004081.1| - 2.4e-08 33.8 0.5 3.2e-07 30.1 0.1 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|312136744|ref|YP_004004081.1| - 8.2e-08 32.3 0.0 2e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|312136744|ref|YP_004004081.1| - 1.2e-06 28.6 0.1 1.2e-05 25.4 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|312136744|ref|YP_004004081.1| - 2.7e-06 26.5 0.0 6.5e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|312136744|ref|YP_004004081.1| - 3.4e-06 27.2 2.4 0.00016 21.7 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|312136744|ref|YP_004004081.1| - 5.9e-05 23.0 0.0 0.00012 22.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312136744|ref|YP_004004081.1| - 8.5e-05 23.3 0.5 0.00035 21.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|312136744|ref|YP_004004081.1| - 0.00018 21.3 0.0 0.00037 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|312136744|ref|YP_004004081.1| - 0.0002 20.3 0.0 0.00032 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|312136744|ref|YP_004004081.1| - 0.00025 20.5 0.3 0.00058 19.3 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|312136744|ref|YP_004004081.1| - 0.00039 20.1 1.1 0.0095 15.6 0.0 2.5 2 1 0 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|312136744|ref|YP_004004081.1| - 0.00043 19.9 1.8 0.0018 17.9 1.3 2.0 1 1 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|312136744|ref|YP_004004081.1| - 0.00063 19.2 4.3 0.12 11.7 0.1 3.2 2 1 0 3 3 3 1 AAA domain TIP49 PF06068.8 gi|312136744|ref|YP_004004081.1| - 0.00092 18.0 0.0 0.0018 17.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus RNA_helicase PF00910.17 gi|312136744|ref|YP_004004081.1| - 0.0011 19.0 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|312136744|ref|YP_004004081.1| - 0.0018 17.4 0.0 0.0034 16.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|312136744|ref|YP_004004081.1| - 0.0034 17.2 0.2 0.012 15.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|312136744|ref|YP_004004081.1| - 0.0058 16.2 0.0 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|312136744|ref|YP_004004081.1| - 0.0071 16.6 0.8 0.015 15.5 0.0 2.1 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|312136744|ref|YP_004004081.1| - 0.0081 15.3 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|312136744|ref|YP_004004081.1| - 0.012 14.7 4.6 0.11 11.5 0.0 3.1 2 1 1 3 3 3 0 KaiC AAA_11 PF13086.1 gi|312136744|ref|YP_004004081.1| - 0.012 15.1 0.4 0.42 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|312136744|ref|YP_004004081.1| - 0.017 14.6 0.1 0.086 12.3 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|312136744|ref|YP_004004081.1| - 0.02 14.4 0.0 0.097 12.2 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2046 PF09755.4 gi|312136744|ref|YP_004004081.1| - 0.028 13.3 4.0 0.05 12.4 2.8 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) Sigma54_activ_2 PF14532.1 gi|312136744|ref|YP_004004081.1| - 0.028 14.4 0.0 0.084 12.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|312136744|ref|YP_004004081.1| - 0.029 13.2 0.0 0.049 12.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Parvo_NS1 PF01057.12 gi|312136744|ref|YP_004004081.1| - 0.037 12.9 0.0 0.066 12.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|312136744|ref|YP_004004081.1| - 0.041 13.1 0.1 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|312136744|ref|YP_004004081.1| - 0.047 13.3 0.1 0.29 10.7 0.0 2.1 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|312136744|ref|YP_004004081.1| - 0.055 13.7 0.4 0.39 11.0 0.0 2.3 2 1 0 2 2 2 0 ABC transporter DUF3584 PF12128.3 gi|312136744|ref|YP_004004081.1| - 0.081 10.2 1.7 0.1 9.8 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Bac_DnaA PF00308.13 gi|312136744|ref|YP_004004081.1| - 0.1 12.2 0.9 0.27 10.8 0.0 2.2 3 0 0 3 3 2 0 Bacterial dnaA protein DUF2075 PF09848.4 gi|312136744|ref|YP_004004081.1| - 0.11 11.4 1.3 0.29 10.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Torsin PF06309.6 gi|312136744|ref|YP_004004081.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_21 PF13304.1 gi|312136744|ref|YP_004004081.1| - 0.18 11.7 1.0 44 3.9 0.0 3.3 2 1 0 3 3 3 0 AAA domain DUF1192 PF06698.6 gi|312136744|ref|YP_004004081.1| - 0.59 9.9 5.1 4.5 7.1 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) FlaC_arch PF05377.6 gi|312136744|ref|YP_004004081.1| - 1.3 8.9 6.0 59 3.6 0.4 3.4 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF972 PF06156.8 gi|312136744|ref|YP_004004081.1| - 1.6 9.1 5.5 13 6.1 3.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF972) AAA_23 PF13476.1 gi|312136744|ref|YP_004004081.1| - 2.1 8.6 5.4 13 6.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF904 PF06005.7 gi|312136744|ref|YP_004004081.1| - 4 7.8 13.5 2.7 8.3 6.3 2.9 3 1 0 3 3 2 0 Protein of unknown function (DUF904) Prenyltrans_1 PF13243.1 gi|312136745|ref|YP_004004082.1| - 4.5e-24 84.5 0.0 1.7e-19 69.8 0.0 2.4 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|312136745|ref|YP_004004082.1| - 5.8e-12 46.0 0.0 9e-07 29.2 0.0 2.4 2 0 0 2 2 2 2 Prenyltransferase-like PMT_2 PF13231.1 gi|312136745|ref|YP_004004082.1| - 5.7e-09 36.0 7.9 5.7e-09 36.0 5.5 3.8 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Prenyltrans PF00432.16 gi|312136745|ref|YP_004004082.1| - 6.3e-05 22.4 0.1 0.064 12.8 0.0 4.0 4 0 0 4 4 4 1 Prenyltransferase and squalene oxidase repeat DUF1680 PF07944.7 gi|312136745|ref|YP_004004082.1| - 0.00037 18.8 0.1 0.00084 17.7 0.1 1.4 1 1 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_88 PF07470.8 gi|312136745|ref|YP_004004082.1| - 0.078 12.0 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 DNA_binding_1 PF01035.15 gi|312136746|ref|YP_004004083.1| - 7.4e-31 105.7 0.0 1.2e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Alliinase_C PF04864.8 gi|312136746|ref|YP_004004083.1| - 0.021 13.4 0.1 0.033 12.8 0.0 1.3 1 1 0 1 1 1 0 Allinase CdhD PF03599.11 gi|312136747|ref|YP_004004084.1| - 1.2e-154 514.5 0.1 1.6e-154 514.1 0.1 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|312136747|ref|YP_004004084.1| - 9.8e-17 60.2 2.5 9.8e-17 60.2 1.7 1.9 2 0 0 2 2 2 1 Putative Fe-S cluster Pterin_bind PF00809.17 gi|312136747|ref|YP_004004084.1| - 2.6e-07 30.2 0.2 4.7e-06 26.1 0.1 2.4 1 1 0 1 1 1 1 Pterin binding enzyme ABC_sub_bind PF04392.7 gi|312136747|ref|YP_004004084.1| - 0.041 12.8 0.0 0.066 12.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein Peripla_BP_6 PF13458.1 gi|312136747|ref|YP_004004084.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Radical_SAM PF04055.16 gi|312136747|ref|YP_004004084.1| - 0.097 12.8 0.5 0.4 10.8 0.1 2.4 2 1 0 2 2 2 0 Radical SAM superfamily CdhD PF03599.11 gi|312136748|ref|YP_004004085.1| - 1.2e-93 313.6 1.7 5.8e-89 298.2 0.0 3.4 2 1 2 4 4 4 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.18 gi|312136749|ref|YP_004004086.1| - 1e-40 139.2 0.5 1.4e-40 138.8 0.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|312136749|ref|YP_004004086.1| - 2.8e-10 39.8 2.6 0.00021 20.5 0.3 2.2 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|312136749|ref|YP_004004086.1| - 5.2e-09 35.5 7.4 1.3e-08 34.3 1.0 3.5 1 1 1 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|312136749|ref|YP_004004086.1| - 1.2e-07 31.1 1.5 0.00062 18.9 0.2 2.2 1 1 1 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|312136749|ref|YP_004004086.1| - 3.2e-07 29.9 0.0 7.7e-07 28.7 0.0 1.6 1 1 0 1 1 1 1 YhjQ protein AAA_31 PF13614.1 gi|312136749|ref|YP_004004086.1| - 1.1e-06 28.6 0.0 0.01 15.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|312136749|ref|YP_004004086.1| - 3.8e-05 23.3 0.3 0.0003 20.4 0.1 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_26 PF13500.1 gi|312136749|ref|YP_004004086.1| - 0.0002 21.0 1.4 0.0095 15.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|312136749|ref|YP_004004086.1| - 0.00032 20.1 0.1 0.00079 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain P-mevalo_kinase PF04275.9 gi|312136749|ref|YP_004004086.1| - 0.0015 18.2 0.1 0.16 11.7 0.0 2.4 2 0 0 2 2 2 1 Phosphomevalonate kinase MobB PF03205.9 gi|312136749|ref|YP_004004086.1| - 0.0016 18.1 0.8 0.038 13.7 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|312136749|ref|YP_004004086.1| - 0.0019 17.7 0.1 0.0064 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|312136749|ref|YP_004004086.1| - 0.0023 18.0 0.4 0.023 14.8 0.0 2.4 1 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|312136749|ref|YP_004004086.1| - 0.0027 16.7 0.1 0.0054 15.7 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TrkA_N PF02254.13 gi|312136749|ref|YP_004004086.1| - 0.0051 16.8 2.1 9.1 6.3 0.2 3.3 2 1 1 3 3 3 0 TrkA-N domain AAA_24 PF13479.1 gi|312136749|ref|YP_004004086.1| - 0.0054 16.3 0.0 0.021 14.4 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|312136749|ref|YP_004004086.1| - 0.0055 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain Toprim_4 PF13662.1 gi|312136749|ref|YP_004004086.1| - 0.0059 16.5 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 Toprim domain SRP54 PF00448.17 gi|312136749|ref|YP_004004086.1| - 0.0082 15.6 1.5 0.47 9.8 0.1 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain DUF87 PF01935.12 gi|312136749|ref|YP_004004086.1| - 0.013 15.3 1.5 0.025 14.4 0.1 2.0 2 1 0 2 2 2 0 Domain of unknown function DUF87 DEAD PF00270.24 gi|312136749|ref|YP_004004086.1| - 0.022 14.2 0.0 0.05 13.1 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase RecA PF00154.16 gi|312136749|ref|YP_004004086.1| - 0.025 13.6 0.0 0.051 12.6 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein RNA_helicase PF00910.17 gi|312136749|ref|YP_004004086.1| - 0.027 14.6 0.0 0.21 11.7 0.0 2.3 2 1 0 2 2 2 0 RNA helicase ArgK PF03308.11 gi|312136749|ref|YP_004004086.1| - 0.036 12.8 0.1 0.094 11.4 0.1 1.7 1 0 0 1 1 1 0 ArgK protein APS_kinase PF01583.15 gi|312136749|ref|YP_004004086.1| - 0.039 13.6 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase ParA PF10609.4 gi|312136749|ref|YP_004004086.1| - 0.044 13.6 0.1 0.16 11.8 0.0 2.0 1 1 1 2 2 1 0 ParA/MinD ATPase like T2SE PF00437.15 gi|312136749|ref|YP_004004086.1| - 0.045 12.6 0.1 0.11 11.4 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|312136749|ref|YP_004004086.1| - 0.048 14.4 3.0 1.7 9.5 2.1 2.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|312136749|ref|YP_004004086.1| - 0.056 13.3 0.1 0.26 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain Zot PF05707.7 gi|312136749|ref|YP_004004086.1| - 0.059 12.8 1.3 0.17 11.3 0.1 2.2 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|312136749|ref|YP_004004086.1| - 0.069 12.2 0.9 0.25 10.4 0.0 2.3 2 1 1 3 3 3 0 KaiC VirC1 PF07015.6 gi|312136749|ref|YP_004004086.1| - 0.071 12.1 0.1 1.6 7.7 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein KTI12 PF08433.5 gi|312136749|ref|YP_004004086.1| - 0.084 12.0 0.1 0.27 10.3 0.0 1.9 2 1 0 2 2 2 0 Chromatin associated protein KTI12 ResIII PF04851.10 gi|312136749|ref|YP_004004086.1| - 0.091 12.5 0.1 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|312136749|ref|YP_004004086.1| - 0.099 12.2 0.7 0.15 11.7 0.5 1.6 1 1 0 1 1 1 0 NACHT domain IF2_N PF04760.10 gi|312136749|ref|YP_004004086.1| - 0.24 11.0 2.8 0.36 10.5 0.1 2.7 4 0 0 4 4 2 0 Translation initiation factor IF-2, N-terminal region CdhC PF03598.10 gi|312136750|ref|YP_004004087.1| - 7.1e-195 647.2 3.6 8.8e-195 646.9 2.5 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DUF3231 PF11553.3 gi|312136750|ref|YP_004004087.1| - 0.22 11.0 1.6 1.5 8.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) HTH_39 PF14090.1 gi|312136750|ref|YP_004004087.1| - 0.47 9.9 2.0 0.46 9.9 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain OMS28_porin PF03532.8 gi|312136750|ref|YP_004004087.1| - 2.8 6.9 6.5 0.14 11.1 0.3 1.8 2 0 0 2 2 2 0 OMS28 porin CO_dh PF02552.11 gi|312136751|ref|YP_004004088.1| - 4e-40 137.1 0.1 4.8e-40 136.8 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|312136751|ref|YP_004004088.1| - 0.00067 19.4 0.0 0.0011 18.7 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HypD PF01924.11 gi|312136751|ref|YP_004004088.1| - 0.0016 17.2 0.0 0.0021 16.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase formation hypA family Prismane PF03063.15 gi|312136752|ref|YP_004004089.1| - 2e-99 333.3 8.1 5.8e-84 282.3 0.0 2.2 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_8 PF13183.1 gi|312136752|ref|YP_004004089.1| - 7.4e-07 29.1 10.5 7.4e-07 29.1 7.3 2.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136752|ref|YP_004004089.1| - 1.3e-06 28.0 11.8 1.3e-06 28.0 8.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136752|ref|YP_004004089.1| - 1.7e-06 28.1 11.0 1.7e-06 28.1 7.6 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136752|ref|YP_004004089.1| - 2.6e-06 27.6 15.9 0.00021 21.5 0.3 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136752|ref|YP_004004089.1| - 1.1e-05 25.7 10.1 1.1e-05 25.7 7.0 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136752|ref|YP_004004089.1| - 3.1e-05 24.3 6.0 0.015 15.6 0.1 3.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312136752|ref|YP_004004089.1| - 0.0008 18.9 3.4 0.0008 18.9 2.4 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136752|ref|YP_004004089.1| - 0.0014 18.4 10.3 0.0014 18.4 7.2 2.7 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|312136752|ref|YP_004004089.1| - 0.0047 16.5 8.9 0.022 14.4 6.1 2.2 1 1 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|312136752|ref|YP_004004089.1| - 0.016 15.0 2.8 0.016 15.0 1.9 3.9 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|312136752|ref|YP_004004089.1| - 0.023 15.0 2.2 0.023 15.0 1.5 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|312136752|ref|YP_004004089.1| - 0.12 13.1 0.2 0.12 13.1 0.1 3.7 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Adenine_deam_C PF13382.1 gi|312136753|ref|YP_004004090.1| - 1e-71 239.5 0.1 1.8e-71 238.8 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|312136753|ref|YP_004004090.1| - 1.5e-32 113.6 0.2 3.6e-32 112.3 0.1 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|312136753|ref|YP_004004090.1| - 1.4e-12 48.2 0.0 2e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|312136753|ref|YP_004004090.1| - 6.1e-10 38.7 0.2 2.4e-09 36.8 0.1 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|312136753|ref|YP_004004090.1| - 1.6e-06 27.6 0.1 0.0088 15.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF3659 PF12396.3 gi|312136753|ref|YP_004004090.1| - 0.11 12.1 1.7 9.5 5.9 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) DUF1397 PF07165.6 gi|312136754|ref|YP_004004091.1| - 0.039 13.1 0.8 0.047 12.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1397) BAR PF03114.13 gi|312136754|ref|YP_004004091.1| - 0.057 12.9 0.3 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 BAR domain Polysacc_syn_2C PF08485.5 gi|312136754|ref|YP_004004091.1| - 0.058 12.9 0.3 0.11 12.0 0.2 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein C-terminal PsiF_repeat PF07769.9 gi|312136754|ref|YP_004004091.1| - 0.19 11.3 1.5 0.43 10.1 1.0 1.6 1 0 0 1 1 1 0 psiF repeat VWA_CoxE PF05762.9 gi|312136755|ref|YP_004004092.1| - 3.7e-49 166.8 0.0 5.2e-49 166.3 0.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MA3 PF02847.12 gi|312136755|ref|YP_004004092.1| - 0.014 15.1 2.9 2.8 7.6 0.5 2.8 2 1 0 2 2 2 0 MA3 domain DUF498 PF04430.9 gi|312136755|ref|YP_004004092.1| - 0.017 14.6 0.0 0.076 12.5 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) Mitovir_RNA_pol PF05919.6 gi|312136755|ref|YP_004004092.1| - 0.26 10.1 6.1 0.61 8.9 1.4 2.1 2 0 0 2 2 2 0 Mitovirus RNA-dependent RNA polymerase LKAAEAR PF15478.1 gi|312136755|ref|YP_004004092.1| - 0.5 10.6 4.1 0.64 10.2 1.7 2.0 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif Trypan_glycop PF00913.14 gi|312136755|ref|YP_004004092.1| - 0.61 8.9 2.7 0.94 8.3 1.9 1.2 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) DUF1829 PF08862.5 gi|312136755|ref|YP_004004092.1| - 0.83 9.9 0.0 0.83 9.9 0.0 3.3 2 2 1 3 3 3 0 Domain of unknown function DUF1829 AAA_5 PF07728.9 gi|312136756|ref|YP_004004093.1| - 5e-20 71.6 0.0 9.3e-20 70.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|312136756|ref|YP_004004093.1| - 3.4e-15 55.7 0.0 1.1e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|312136756|ref|YP_004004093.1| - 5.1e-12 46.1 0.2 2.9e-11 43.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|312136756|ref|YP_004004093.1| - 2e-08 34.3 0.0 3.5e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|312136756|ref|YP_004004093.1| - 2.1e-08 34.3 0.0 2e-07 31.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|312136756|ref|YP_004004093.1| - 1.6e-06 28.9 0.0 3.9e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|312136756|ref|YP_004004093.1| - 1.6e-06 28.3 0.0 8.8e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|312136756|ref|YP_004004093.1| - 2.5e-06 27.4 1.1 1.6e-05 24.7 0.4 2.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|312136756|ref|YP_004004093.1| - 8.1e-06 26.1 0.9 5.5e-05 23.4 0.1 2.6 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|312136756|ref|YP_004004093.1| - 7.2e-05 22.3 0.0 0.00034 20.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|312136756|ref|YP_004004093.1| - 9e-05 21.4 0.1 0.0081 14.9 0.0 2.6 3 0 0 3 3 3 1 MCM2/3/5 family AAA_19 PF13245.1 gi|312136756|ref|YP_004004093.1| - 0.00011 21.9 0.0 0.00021 21.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|312136756|ref|YP_004004093.1| - 0.00013 21.0 0.1 0.094 11.7 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|312136756|ref|YP_004004093.1| - 0.00063 19.4 0.0 0.029 14.1 0.0 2.5 2 0 0 2 2 2 1 NTPase NACHT PF05729.7 gi|312136756|ref|YP_004004093.1| - 0.00089 18.9 0.1 0.0051 16.4 0.0 2.1 2 1 1 3 3 3 1 NACHT domain TIP49 PF06068.8 gi|312136756|ref|YP_004004093.1| - 0.0016 17.2 0.3 0.03 13.0 0.0 2.3 3 0 0 3 3 3 1 TIP49 C-terminus AAA_11 PF13086.1 gi|312136756|ref|YP_004004093.1| - 0.0019 17.8 0.0 0.003 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|312136756|ref|YP_004004093.1| - 0.0023 18.0 0.0 0.01 16.0 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Sigma54_activ_2 PF14532.1 gi|312136756|ref|YP_004004093.1| - 0.0025 17.8 0.1 0.019 14.9 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|312136756|ref|YP_004004093.1| - 0.0027 16.9 0.0 0.051 12.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|312136756|ref|YP_004004093.1| - 0.0033 17.1 0.3 0.0033 17.1 0.2 2.3 1 1 1 2 2 2 1 Archaeal ATPase KAP_NTPase PF07693.9 gi|312136756|ref|YP_004004093.1| - 0.0036 16.3 0.2 0.53 9.2 0.0 2.4 1 1 1 2 2 2 1 KAP family P-loop domain NB-ARC PF00931.17 gi|312136756|ref|YP_004004093.1| - 0.0045 15.8 0.0 0.0075 15.1 0.0 1.6 1 1 0 1 1 1 1 NB-ARC domain Zeta_toxin PF06414.7 gi|312136756|ref|YP_004004093.1| - 0.0054 15.8 0.0 0.01 14.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin UPF0079 PF02367.12 gi|312136756|ref|YP_004004093.1| - 0.0059 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DNA_pol3_delta2 PF13177.1 gi|312136756|ref|YP_004004093.1| - 0.0069 16.0 1.0 0.11 12.1 0.1 2.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit KaiC PF06745.8 gi|312136756|ref|YP_004004093.1| - 0.007 15.5 0.2 0.07 12.2 0.0 2.4 2 1 0 2 2 2 1 KaiC KTI12 PF08433.5 gi|312136756|ref|YP_004004093.1| - 0.0082 15.3 0.1 0.16 11.1 0.0 2.2 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|312136756|ref|YP_004004093.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|312136756|ref|YP_004004093.1| - 0.012 15.0 0.1 5.1 6.4 0.0 2.6 2 1 0 2 2 2 0 Guanylate kinase T2SE PF00437.15 gi|312136756|ref|YP_004004093.1| - 0.013 14.4 0.1 0.053 12.4 0.0 2.1 2 1 0 2 2 2 0 Type II/IV secretion system protein GvpD PF07088.6 gi|312136756|ref|YP_004004093.1| - 0.015 13.6 0.0 0.018 13.3 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_30 PF13604.1 gi|312136756|ref|YP_004004093.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|312136756|ref|YP_004004093.1| - 0.019 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein LSM14 PF12701.2 gi|312136756|ref|YP_004004093.1| - 0.031 14.0 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Scd6-like Sm domain AAA_28 PF13521.1 gi|312136756|ref|YP_004004093.1| - 0.036 14.0 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|312136756|ref|YP_004004093.1| - 0.036 13.8 0.0 0.086 12.6 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SKI PF01202.17 gi|312136756|ref|YP_004004093.1| - 0.045 13.6 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase DUF2075 PF09848.4 gi|312136756|ref|YP_004004093.1| - 0.066 12.1 0.0 0.12 11.3 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Aminotran_3 PF00202.16 gi|312136757|ref|YP_004004094.1| - 6.5e-117 390.1 0.1 7.8e-117 389.9 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|312136757|ref|YP_004004094.1| - 4.6e-09 35.6 0.0 5.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|312136757|ref|YP_004004094.1| - 7.7e-07 28.5 0.0 1.5e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|312136757|ref|YP_004004094.1| - 6.2e-05 21.9 0.0 0.00012 20.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|312136757|ref|YP_004004094.1| - 0.071 11.3 0.0 0.097 10.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M48 PF01435.13 gi|312136758|ref|YP_004004095.1| - 7.9e-20 71.3 0.1 1.9e-19 70.1 0.1 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|312136758|ref|YP_004004095.1| - 0.058 12.3 2.2 0.18 10.7 1.0 2.1 1 1 1 2 2 2 0 BlaR1 peptidase M56 3H PF02829.9 gi|312136759|ref|YP_004004096.1| - 4.4e-70 231.8 15.9 3.1e-24 84.8 0.1 4.1 4 0 0 4 4 4 3 3H domain TrkA_N PF02254.13 gi|312136759|ref|YP_004004096.1| - 4.5e-33 113.6 0.9 2.7e-32 111.1 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|312136759|ref|YP_004004096.1| - 3.9e-10 39.2 13.8 7e-10 38.4 9.6 1.4 1 0 0 1 1 1 1 Ion channel NAD_binding_7 PF13241.1 gi|312136759|ref|YP_004004096.1| - 2.2e-05 24.6 0.7 0.00051 20.2 0.1 3.0 3 1 0 3 3 3 1 Putative NAD(P)-binding YjcQ PF09639.5 gi|312136759|ref|YP_004004096.1| - 3.5e-05 23.8 0.8 3.2 7.8 0.0 4.1 3 1 0 3 3 3 2 YjcQ protein DUF2622 PF11080.3 gi|312136759|ref|YP_004004096.1| - 0.00017 21.3 0.7 0.019 14.7 0.0 3.5 4 1 0 4 4 4 1 Protein of unknown function (DUF2622) RraB PF06877.6 gi|312136759|ref|YP_004004096.1| - 0.05 14.2 0.1 0.96 10.1 0.0 3.0 3 0 0 3 3 3 0 Regulator of ribonuclease activity B EcoEI_R_C PF08463.5 gi|312136759|ref|YP_004004096.1| - 0.065 13.0 0.6 2.3 8.0 0.0 3.0 3 1 0 3 3 3 0 EcoEI R protein C-terminal Pyr_redox_2 PF07992.9 gi|312136759|ref|YP_004004096.1| - 0.14 12.0 1.5 1.1e+02 2.6 0.1 3.7 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|312136759|ref|YP_004004096.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding FTR_C PF02741.10 gi|312136760|ref|YP_004004097.1| - 2.4e-72 241.6 1.9 4.4e-72 240.7 1.3 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|312136760|ref|YP_004004097.1| - 2.9e-61 205.4 0.1 5.7e-61 204.4 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase UPF0104 PF03706.8 gi|312136761|ref|YP_004004098.1| - 2.9e-47 161.3 29.5 3.6e-47 161.0 20.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Nairovirus_M PF07948.6 gi|312136761|ref|YP_004004098.1| - 0.18 9.8 0.3 0.27 9.3 0.2 1.1 1 0 0 1 1 1 0 Nairovirus M polyprotein-like Metallophos_2 PF12850.2 gi|312136762|ref|YP_004004099.1| - 1.4e-27 96.4 0.1 1.6e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312136762|ref|YP_004004099.1| - 8.3e-07 28.5 1.9 1.7e-05 24.3 1.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|312136762|ref|YP_004004099.1| - 1.6e-05 24.2 0.3 0.099 11.7 0.0 2.1 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily CobN-Mg_chel PF02514.11 gi|312136763|ref|YP_004004100.1| - 1e-290 966.9 0.0 3.1e-225 750.1 0.0 3.1 3 0 0 3 3 3 3 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|312136763|ref|YP_004004100.1| - 0.22 11.2 0.0 0.68 9.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) Acylphosphatase PF00708.13 gi|312136764|ref|YP_004004101.1| - 3.5e-31 107.1 0.5 3.8e-31 107.0 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF87 PF01935.12 gi|312136765|ref|YP_004004102.1| - 4.8e-31 108.3 0.2 9e-31 107.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|312136765|ref|YP_004004102.1| - 3.8e-20 72.5 0.0 3.9e-13 49.5 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|312136765|ref|YP_004004102.1| - 1.3e-06 28.0 0.0 0.00029 20.3 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|312136765|ref|YP_004004102.1| - 0.0029 16.2 0.0 0.033 12.8 0.0 2.1 2 1 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF552 PF04472.7 gi|312136765|ref|YP_004004102.1| - 0.0043 16.9 0.2 0.012 15.4 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF552) NurA PF09376.5 gi|312136766|ref|YP_004004103.1| - 2e-11 43.8 0.1 8.8e-11 41.7 0.1 2.0 1 1 0 1 1 1 1 NurA domain DUF2097 PF09870.4 gi|312136767|ref|YP_004004104.1| - 1.3e-22 79.6 2.8 1.4e-22 79.5 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) Lip_prot_lig_C PF10437.4 gi|312136767|ref|YP_004004104.1| - 0.15 11.7 1.0 0.36 10.5 0.1 1.9 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Osmo_MPGsynth PF09488.5 gi|312136769|ref|YP_004004106.1| - 2.9e-147 490.3 2.5 3.3e-147 490.1 1.8 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Glycos_transf_2 PF00535.21 gi|312136769|ref|YP_004004106.1| - 0.0021 17.7 0.7 1.8 8.2 0.0 2.4 1 1 1 2 2 2 2 Glycosyl transferase family 2 Hydrolase_3 PF08282.7 gi|312136770|ref|YP_004004107.1| - 7.2e-17 61.8 5.1 2.9e-16 59.8 3.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|312136770|ref|YP_004004107.1| - 2.5e-09 36.8 0.0 3e-08 33.2 0.0 2.2 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|312136770|ref|YP_004004107.1| - 2.8e-06 27.6 1.1 6e-05 23.2 0.6 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|312136770|ref|YP_004004107.1| - 5.2e-05 23.7 1.8 0.00069 20.0 1.2 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|312136770|ref|YP_004004107.1| - 0.0001 22.0 0.0 0.00023 21.0 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|312136770|ref|YP_004004107.1| - 0.0042 16.0 0.1 0.0065 15.4 0.0 1.3 1 0 0 1 1 1 1 Trehalose-phosphatase PLDc_2 PF13091.1 gi|312136770|ref|YP_004004107.1| - 0.25 11.0 1.9 1.3 8.8 0.9 2.3 2 1 0 2 2 2 0 PLD-like domain Glyco_hydro_38 PF01074.17 gi|312136771|ref|YP_004004108.1| - 1e-61 208.6 0.0 1.6e-61 208.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|312136771|ref|YP_004004108.1| - 1.1e-47 162.9 0.1 7.6e-47 160.1 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|312136771|ref|YP_004004108.1| - 3.3e-09 36.8 0.0 1.1e-08 35.1 0.0 2.0 1 0 0 1 1 1 1 Alpha mannosidase, middle domain Glyco_hydro_57 PF03065.10 gi|312136771|ref|YP_004004108.1| - 3e-05 23.1 2.0 6.4e-05 22.0 0.4 2.2 3 0 0 3 3 3 1 Glycosyl hydrolase family 57 PGM_PMM_I PF02878.11 gi|312136772|ref|YP_004004109.1| - 8.5e-44 148.3 0.0 2.8e-43 146.7 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|312136772|ref|YP_004004109.1| - 1.1e-29 102.7 1.4 3.2e-29 101.2 0.1 2.3 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|312136772|ref|YP_004004109.1| - 1.7e-27 95.7 0.0 3.8e-27 94.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|312136772|ref|YP_004004109.1| - 1.4e-11 44.2 0.0 1.5e-10 40.9 0.0 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain HGD-D PF06050.8 gi|312136772|ref|YP_004004109.1| - 0.0003 19.7 0.0 0.0044 15.8 0.0 2.2 2 0 0 2 2 2 1 2-hydroxyglutaryl-CoA dehydratase, D-component ThiG PF05690.9 gi|312136772|ref|YP_004004109.1| - 0.046 12.7 0.1 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Methyltransf_29 PF03141.11 gi|312136772|ref|YP_004004109.1| - 0.046 12.0 0.0 0.066 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF2862 PF11061.3 gi|312136772|ref|YP_004004109.1| - 0.13 12.0 9.8 3.4 7.4 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2862) DUF2359 PF10151.4 gi|312136772|ref|YP_004004109.1| - 0.18 10.2 0.0 0.28 9.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2359) DUF2701 PF10857.3 gi|312136773|ref|YP_004004110.1| - 0.022 14.5 3.5 0.18 11.5 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2701) DUF4079 PF13301.1 gi|312136773|ref|YP_004004110.1| - 0.025 14.5 0.1 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) E1-E2_ATPase PF00122.15 gi|312136773|ref|YP_004004110.1| - 0.09 11.8 5.5 0.061 12.3 0.3 2.0 1 1 1 2 2 2 0 E1-E2 ATPase CDC37_N PF03234.9 gi|312136773|ref|YP_004004110.1| - 0.1 12.9 10.7 0.12 12.6 7.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding RNA_pol_Rpb4 PF03874.11 gi|312136773|ref|YP_004004110.1| - 0.27 11.2 8.2 0.38 10.7 5.6 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb4 DUF2681 PF10883.3 gi|312136773|ref|YP_004004110.1| - 0.48 10.6 13.6 0.63 10.2 0.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2681) Fzo_mitofusin PF04799.8 gi|312136773|ref|YP_004004110.1| - 0.91 8.8 12.8 0.052 12.9 4.5 2.0 1 1 1 2 2 2 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|312136773|ref|YP_004004110.1| - 2 6.1 10.7 2.7 5.7 7.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Latarcin PF10279.4 gi|312136773|ref|YP_004004110.1| - 2.5 8.3 9.3 4.5 7.5 5.2 2.2 1 1 0 1 1 1 0 Latarcin precursor AAA_23 PF13476.1 gi|312136773|ref|YP_004004110.1| - 2.6 8.3 16.2 3.2 8.0 11.2 1.2 1 0 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|312136773|ref|YP_004004110.1| - 4.6 6.7 18.2 9.5 5.7 0.2 3.2 2 1 1 3 3 3 0 Septum formation initiator COG2 PF06148.6 gi|312136773|ref|YP_004004110.1| - 5 7.0 11.0 13 5.6 7.6 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Atg14 PF10186.4 gi|312136773|ref|YP_004004110.1| - 5.7 5.7 16.7 7 5.4 11.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FTCD_C PF04961.7 gi|312136773|ref|YP_004004110.1| - 6 6.2 6.4 11 5.3 3.8 1.8 1 1 0 1 1 1 0 Formiminotransferase-cyclodeaminase Phasin PF05597.6 gi|312136774|ref|YP_004004111.1| - 0.0003 20.5 2.4 0.00036 20.3 0.5 1.8 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Atg14 PF10186.4 gi|312136774|ref|YP_004004111.1| - 0.0026 16.7 1.9 0.0033 16.4 1.3 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 NTS_2 PF15448.1 gi|312136774|ref|YP_004004111.1| - 0.005 17.1 2.1 0.018 15.2 1.3 2.1 1 1 1 2 2 2 1 N-terminal segments of P. falciparum erythrocyte membrane protein FliD_C PF07195.7 gi|312136774|ref|YP_004004111.1| - 0.0051 16.1 0.6 0.0068 15.7 0.4 1.3 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus LIF_OSM PF01291.12 gi|312136774|ref|YP_004004111.1| - 0.0068 16.3 0.0 0.0083 16.0 0.0 1.2 1 0 0 1 1 1 1 LIF / OSM family DUF948 PF06103.6 gi|312136774|ref|YP_004004111.1| - 0.0073 16.1 6.3 0.86 9.5 0.0 2.9 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) DHC_N2 PF08393.8 gi|312136774|ref|YP_004004111.1| - 0.0083 14.6 1.5 0.043 12.3 1.0 1.8 1 1 0 1 1 1 1 Dynein heavy chain, N-terminal region 2 Phage_Mu_Gam PF07352.7 gi|312136774|ref|YP_004004111.1| - 0.0098 15.4 2.3 0.2 11.1 0.3 2.1 2 0 0 2 2 2 1 Bacteriophage Mu Gam like protein Prefoldin_2 PF01920.15 gi|312136774|ref|YP_004004111.1| - 0.013 15.2 0.9 0.013 15.2 0.6 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF1699 PF08004.6 gi|312136774|ref|YP_004004111.1| - 0.02 14.4 1.3 0.067 12.7 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1699) DUF4613 PF15390.1 gi|312136774|ref|YP_004004111.1| - 0.029 12.5 0.4 0.03 12.5 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) Matrilin_ccoil PF10393.4 gi|312136774|ref|YP_004004111.1| - 0.04 13.2 1.2 0.9 8.9 0.0 2.9 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin PRESAN PF09687.5 gi|312136774|ref|YP_004004111.1| - 0.043 13.8 2.0 0.043 13.8 1.4 1.9 1 1 0 1 1 1 0 Plasmodium RESA N-terminal DUF3782 PF12644.2 gi|312136774|ref|YP_004004111.1| - 0.072 12.8 5.2 0.19 11.5 0.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3782) NPV_P10 PF05531.7 gi|312136774|ref|YP_004004111.1| - 0.075 13.2 0.2 0.68 10.2 0.0 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|312136774|ref|YP_004004111.1| - 0.084 13.0 1.5 0.25 11.5 0.7 1.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.1 gi|312136774|ref|YP_004004111.1| - 0.084 12.9 3.2 0.096 12.7 0.6 2.0 1 1 1 2 2 2 0 Syntaxin-like protein EMP24_GP25L PF01105.19 gi|312136774|ref|YP_004004111.1| - 0.099 12.3 2.8 0.18 11.5 1.9 1.6 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD ApoO PF09769.4 gi|312136774|ref|YP_004004111.1| - 0.1 12.2 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Apolipoprotein O Myb_DNA-bind_6 PF13921.1 gi|312136774|ref|YP_004004111.1| - 0.12 12.5 1.9 0.65 10.1 0.1 2.6 1 1 2 3 3 3 0 Myb-like DNA-binding domain Syntaxin PF00804.20 gi|312136774|ref|YP_004004111.1| - 0.19 11.8 5.5 1.5 8.9 3.8 2.1 1 1 0 1 1 1 0 Syntaxin DUF4164 PF13747.1 gi|312136774|ref|YP_004004111.1| - 0.22 11.6 2.3 0.24 11.5 0.7 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4164) DUF4446 PF14584.1 gi|312136774|ref|YP_004004111.1| - 0.23 11.2 3.6 0.3 10.8 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) YkyA PF10368.4 gi|312136774|ref|YP_004004111.1| - 0.32 10.3 6.5 0.51 9.6 4.5 1.4 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Hemagglutinin PF00509.13 gi|312136774|ref|YP_004004111.1| - 0.65 8.0 3.8 0.57 8.2 0.3 1.9 1 1 1 2 2 2 0 Haemagglutinin Enkurin PF13864.1 gi|312136774|ref|YP_004004111.1| - 1.1 9.5 4.3 5 7.4 1.2 2.2 1 1 1 2 2 2 0 Calmodulin-binding DUF16 PF01519.11 gi|312136774|ref|YP_004004111.1| - 5 7.3 7.7 2.6 8.2 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 tRNA_anti-codon PF01336.20 gi|312136775|ref|YP_004004112.1| - 1.1e-07 31.5 1.3 3.4e-07 30.0 0.2 2.0 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|312136775|ref|YP_004004112.1| - 0.00051 19.8 0.0 0.00074 19.3 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|312136775|ref|YP_004004112.1| - 0.023 14.1 0.8 0.1 12.0 0.3 2.0 1 1 1 2 2 2 0 tRNA_anti-like PMT_2 PF13231.1 gi|312136776|ref|YP_004004113.1| - 6.9e-11 42.2 25.5 6.9e-11 42.2 17.7 2.6 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.1 gi|312136776|ref|YP_004004113.1| - 6.3e-05 22.0 46.0 0.00022 20.3 31.9 1.8 1 1 0 1 1 1 1 EpsG family PTH2 PF01981.11 gi|312136777|ref|YP_004004114.1| - 4.3e-42 142.4 0.2 4.8e-42 142.3 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 ABC-3 PF00950.12 gi|312136778|ref|YP_004004115.1| - 1.2e-42 145.9 25.3 1.5e-42 145.7 17.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family ABC-3 PF00950.12 gi|312136779|ref|YP_004004116.1| - 2.5e-56 190.8 29.6 2.8e-56 190.6 20.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|312136779|ref|YP_004004116.1| - 6.4e-05 21.9 33.4 0.00019 20.3 23.2 1.6 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|312136780|ref|YP_004004117.1| - 8.6e-34 116.7 0.0 1.2e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136780|ref|YP_004004117.1| - 4.9e-16 59.5 0.1 1.3e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|312136780|ref|YP_004004117.1| - 3e-07 29.8 0.1 0.0018 17.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|312136780|ref|YP_004004117.1| - 7.1e-07 28.6 0.0 0.0097 15.1 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|312136780|ref|YP_004004117.1| - 3.9e-06 27.3 0.0 5.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|312136780|ref|YP_004004117.1| - 5.6e-05 21.9 0.1 0.044 12.3 0.1 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|312136780|ref|YP_004004117.1| - 0.00041 19.8 0.1 0.00085 18.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|312136780|ref|YP_004004117.1| - 0.003 17.4 0.0 0.031 14.1 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|312136780|ref|YP_004004117.1| - 0.013 14.7 0.1 0.019 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|312136780|ref|YP_004004117.1| - 0.014 15.0 0.5 0.027 14.0 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|312136780|ref|YP_004004117.1| - 0.014 15.5 0.4 1.7 8.7 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|312136780|ref|YP_004004117.1| - 0.016 15.4 0.4 1.8 8.7 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|312136780|ref|YP_004004117.1| - 0.017 14.5 0.3 0.041 13.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|312136780|ref|YP_004004117.1| - 0.017 15.9 0.1 0.035 14.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|312136780|ref|YP_004004117.1| - 0.023 13.5 1.8 0.14 10.9 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.2 gi|312136780|ref|YP_004004117.1| - 0.052 12.9 0.0 2.8 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|312136780|ref|YP_004004117.1| - 0.056 13.2 0.9 0.1 12.3 0.4 1.6 2 0 0 2 2 1 0 Part of AAA domain AAA_13 PF13166.1 gi|312136780|ref|YP_004004117.1| - 0.064 11.7 0.6 2.9 6.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|312136780|ref|YP_004004117.1| - 0.078 12.6 1.0 0.17 11.4 0.4 1.8 2 1 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|312136780|ref|YP_004004117.1| - 0.084 12.5 0.1 0.21 11.3 0.1 1.7 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|312136780|ref|YP_004004117.1| - 0.1 11.6 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|312136780|ref|YP_004004117.1| - 0.11 12.4 0.1 2.8 7.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|312136780|ref|YP_004004117.1| - 0.11 12.3 0.1 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|312136780|ref|YP_004004117.1| - 0.14 11.3 0.3 0.35 10.0 0.2 1.6 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.14 gi|312136780|ref|YP_004004117.1| - 0.16 11.4 0.4 0.29 10.5 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TroA PF01297.12 gi|312136781|ref|YP_004004118.1| - 2.2e-30 105.7 0.2 3.3e-30 105.1 0.2 1.3 1 1 0 1 1 1 1 Periplasmic solute binding protein family Carboxyl_trans PF01039.17 gi|312136781|ref|YP_004004118.1| - 0.04 12.2 0.0 0.085 11.1 0.0 1.4 1 1 0 1 1 1 0 Carboxyl transferase domain ABC2_membrane_3 PF12698.2 gi|312136781|ref|YP_004004118.1| - 0.06 12.3 0.2 0.068 12.1 0.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PCMT PF01135.14 gi|312136781|ref|YP_004004118.1| - 0.065 12.7 0.1 0.13 11.7 0.1 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPR_17 PF13431.1 gi|312136781|ref|YP_004004118.1| - 0.087 13.0 0.3 0.21 11.8 0.2 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Lactamase_B PF00753.22 gi|312136782|ref|YP_004004119.1| - 1.5e-14 54.1 0.0 2.1e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|312136782|ref|YP_004004119.1| - 5.7e-08 32.5 0.5 1.2e-06 28.1 0.4 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Redoxin PF08534.5 gi|312136782|ref|YP_004004119.1| - 0.021 14.3 0.2 0.045 13.2 0.2 1.5 1 0 0 1 1 1 0 Redoxin Lactamase_B_3 PF13483.1 gi|312136782|ref|YP_004004119.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain AAA PF00004.24 gi|312136783|ref|YP_004004120.1| - 0.0013 18.9 0.0 0.0029 17.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|312136783|ref|YP_004004120.1| - 0.0019 17.9 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain NB-ARC PF00931.17 gi|312136783|ref|YP_004004120.1| - 0.0052 15.6 0.3 0.03 13.1 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain DUF2935 PF11155.3 gi|312136783|ref|YP_004004120.1| - 0.011 15.7 2.0 0.013 15.5 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) ArgK PF03308.11 gi|312136783|ref|YP_004004120.1| - 0.017 13.9 0.0 0.043 12.5 0.0 1.6 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|312136783|ref|YP_004004120.1| - 0.019 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_11 PF13086.1 gi|312136783|ref|YP_004004120.1| - 0.023 14.2 0.0 0.07 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|312136783|ref|YP_004004120.1| - 0.057 14.2 0.2 0.17 12.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|312136783|ref|YP_004004120.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|312136783|ref|YP_004004120.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|312136783|ref|YP_004004120.1| - 0.18 11.6 2.6 1.4 8.8 0.1 3.0 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|312136783|ref|YP_004004120.1| - 0.23 10.8 3.4 9.7 5.5 0.0 2.9 3 0 0 3 3 3 0 Thymidylate kinase Methyltransf_31 PF13847.1 gi|312136784|ref|YP_004004121.1| - 7.1e-20 71.1 0.0 9.5e-20 70.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312136784|ref|YP_004004121.1| - 2.7e-18 66.2 0.0 4.1e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312136784|ref|YP_004004121.1| - 3.8e-15 56.4 0.0 5.9e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|312136784|ref|YP_004004121.1| - 7.2e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312136784|ref|YP_004004121.1| - 1.5e-13 50.7 0.0 2e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|312136784|ref|YP_004004121.1| - 3e-12 46.1 0.0 4.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|312136784|ref|YP_004004121.1| - 3.3e-11 43.4 0.0 4.7e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312136784|ref|YP_004004121.1| - 7.2e-10 38.4 0.0 1.3e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|312136784|ref|YP_004004121.1| - 3e-09 36.9 0.0 4.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|312136784|ref|YP_004004121.1| - 5.3e-09 35.6 0.0 7.9e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|312136784|ref|YP_004004121.1| - 2.1e-05 24.2 0.0 3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|312136784|ref|YP_004004121.1| - 2.9e-05 23.2 0.0 4.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|312136784|ref|YP_004004121.1| - 8.2e-05 21.8 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.6 gi|312136784|ref|YP_004004121.1| - 8.5e-05 22.0 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|312136784|ref|YP_004004121.1| - 0.00014 21.0 0.0 0.0002 20.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|312136784|ref|YP_004004121.1| - 0.00083 18.9 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF43 PF01861.11 gi|312136784|ref|YP_004004121.1| - 0.0015 17.5 0.1 0.0028 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_4 PF02390.12 gi|312136784|ref|YP_004004121.1| - 0.0053 15.8 0.0 0.0086 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MetW PF07021.7 gi|312136784|ref|YP_004004121.1| - 0.0053 16.1 0.0 0.0078 15.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_16 PF10294.4 gi|312136784|ref|YP_004004121.1| - 0.0055 16.1 0.1 0.025 14.0 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_3 PF01596.12 gi|312136784|ref|YP_004004121.1| - 0.0075 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase AdoMet_MTase PF07757.8 gi|312136784|ref|YP_004004121.1| - 0.0098 15.9 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase FmrO PF07091.6 gi|312136784|ref|YP_004004121.1| - 0.029 13.3 0.0 0.041 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) CheR PF01739.13 gi|312136784|ref|YP_004004121.1| - 0.032 13.5 0.3 2.7 7.2 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain CMAS PF02353.15 gi|312136784|ref|YP_004004121.1| - 0.038 13.0 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|312136784|ref|YP_004004121.1| - 0.075 12.5 0.0 0.16 11.5 0.0 1.5 2 0 0 2 2 1 0 Putative RNA methylase family UPF0020 N2227 PF07942.7 gi|312136784|ref|YP_004004121.1| - 0.08 11.8 0.0 0.23 10.3 0.0 1.7 1 1 1 2 2 2 0 N2227-like protein GIDA PF01134.17 gi|312136785|ref|YP_004004122.1| - 7.8e-33 113.8 0.0 1.1e-21 77.1 0.0 2.2 1 1 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|312136785|ref|YP_004004122.1| - 1.9e-18 66.8 0.1 2.8e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|312136785|ref|YP_004004122.1| - 7.8e-11 42.2 1.4 3.1e-08 33.9 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|312136785|ref|YP_004004122.1| - 9.4e-11 41.2 1.6 4.1e-06 25.9 1.3 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|312136785|ref|YP_004004122.1| - 3.8e-09 36.7 0.0 5.6e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|312136785|ref|YP_004004122.1| - 2.1e-07 29.9 2.3 0.0044 15.6 1.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|312136785|ref|YP_004004122.1| - 1.1e-06 27.8 6.1 0.00019 20.4 2.4 2.9 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|312136785|ref|YP_004004122.1| - 1.2e-06 28.3 0.3 2.8e-06 27.2 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|312136785|ref|YP_004004122.1| - 4.8e-06 25.2 1.6 0.00015 20.3 0.4 2.8 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|312136785|ref|YP_004004122.1| - 9.3e-05 22.0 0.4 0.00017 21.2 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|312136785|ref|YP_004004122.1| - 0.00015 20.9 0.7 0.00024 20.2 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|312136785|ref|YP_004004122.1| - 0.0019 17.2 0.1 0.0046 15.9 0.0 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|312136785|ref|YP_004004122.1| - 0.0038 16.3 3.4 0.02 13.9 2.4 2.1 1 1 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|312136785|ref|YP_004004122.1| - 0.053 13.5 0.2 0.21 11.6 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|312136785|ref|YP_004004122.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|312136785|ref|YP_004004122.1| - 0.11 12.8 0.0 0.52 10.5 0.0 2.2 3 0 0 3 3 2 0 Putative NAD(P)-binding Fer2_3 PF13085.1 gi|312136786|ref|YP_004004123.1| - 0.00028 20.6 1.4 0.0019 18.0 0.5 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_8 PF08022.7 gi|312136786|ref|YP_004004123.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 FAD-binding domain MFS_1 PF07690.11 gi|312136787|ref|YP_004004124.1| - 9.2e-51 172.6 48.8 9.2e-51 172.6 33.8 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|312136787|ref|YP_004004124.1| - 1.3e-10 40.0 7.0 1.3e-10 40.0 4.9 2.0 2 0 0 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|312136787|ref|YP_004004124.1| - 7.6e-09 34.6 18.1 7.6e-09 34.6 12.6 4.1 2 2 2 4 4 4 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|312136787|ref|YP_004004124.1| - 1.2 7.4 53.9 0.054 11.8 13.5 4.2 1 1 3 4 4 4 0 MFS/sugar transport protein Methyltransf_2 PF00891.13 gi|312136788|ref|YP_004004125.1| - 3.4e-14 52.6 0.0 7.9e-14 51.4 0.0 1.7 2 1 0 2 2 2 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|312136788|ref|YP_004004125.1| - 1.1e-08 35.6 0.0 2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|312136788|ref|YP_004004125.1| - 4.5e-06 26.3 0.0 8.9e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312136788|ref|YP_004004125.1| - 0.0013 18.1 0.0 0.0025 17.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|312136788|ref|YP_004004125.1| - 0.0054 17.1 0.0 0.014 15.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|312136788|ref|YP_004004125.1| - 0.02 14.0 0.0 0.047 12.8 0.0 1.6 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_16 PF10294.4 gi|312136788|ref|YP_004004125.1| - 0.097 12.1 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase SPASM PF13186.1 gi|312136789|ref|YP_004004126.1| - 3.7e-13 49.5 1.2 7.2e-13 48.6 0.4 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|312136789|ref|YP_004004126.1| - 2.2e-12 47.4 0.0 3.6e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312136789|ref|YP_004004126.1| - 4e-06 26.9 0.2 9.2e-06 25.8 0.1 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312136789|ref|YP_004004126.1| - 1.1e-05 25.4 0.2 3.3e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain TPR_1 PF00515.23 gi|312136790|ref|YP_004004127.1| - 1.7e-35 119.1 32.6 9.7e-07 28.1 0.2 11.1 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|312136790|ref|YP_004004127.1| - 6.7e-34 115.3 20.1 4.4e-10 39.0 0.1 6.7 3 2 2 6 6 6 6 TPR repeat TPR_2 PF07719.12 gi|312136790|ref|YP_004004127.1| - 4.9e-31 104.1 28.4 3.4e-05 23.4 0.1 11.2 11 1 0 11 11 11 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|312136790|ref|YP_004004127.1| - 2.7e-25 88.0 21.9 7.9e-10 38.5 0.6 5.9 2 2 6 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|312136790|ref|YP_004004127.1| - 7.3e-20 69.2 34.3 1.1e-05 24.8 0.1 10.3 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|312136790|ref|YP_004004127.1| - 1.1e-19 69.0 1.5 0.012 16.1 0.1 7.5 6 1 2 8 8 7 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|312136790|ref|YP_004004127.1| - 1.2e-16 60.8 7.1 0.00024 21.6 0.1 5.9 3 2 4 7 7 7 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|312136790|ref|YP_004004127.1| - 1.6e-13 49.3 15.8 0.038 13.7 0.0 8.2 6 1 2 8 8 8 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|312136790|ref|YP_004004127.1| - 7.3e-12 44.9 14.3 0.061 13.8 0.0 8.4 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|312136790|ref|YP_004004127.1| - 7.6e-12 45.4 8.6 0.00021 21.5 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|312136790|ref|YP_004004127.1| - 1.3e-10 40.6 23.5 0.055 13.6 0.0 9.3 8 2 1 9 9 9 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|312136790|ref|YP_004004127.1| - 1.2e-07 31.5 2.3 0.00052 19.8 0.4 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|312136790|ref|YP_004004127.1| - 1.1e-05 25.1 4.0 0.15 12.0 0.0 5.5 6 0 0 6 6 6 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|312136790|ref|YP_004004127.1| - 0.00069 19.7 24.2 0.0034 17.4 1.8 5.2 2 1 3 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 SHNi-TPR PF10516.4 gi|312136790|ref|YP_004004127.1| - 0.00069 18.8 5.4 18 4.6 0.0 5.9 6 0 0 6 6 6 0 SHNi-TPR DUF3366 PF11846.3 gi|312136790|ref|YP_004004127.1| - 0.0015 18.4 4.5 0.12 12.2 0.5 3.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3366) Apc5 PF12862.2 gi|312136790|ref|YP_004004127.1| - 0.014 15.2 7.5 0.2 11.5 1.9 3.8 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 RPN7 PF10602.4 gi|312136790|ref|YP_004004127.1| - 0.13 11.6 8.0 0.41 9.9 0.4 4.0 2 2 2 4 4 4 0 26S proteasome subunit RPN7 DUF4248 PF14053.1 gi|312136790|ref|YP_004004127.1| - 0.88 9.2 5.7 15 5.2 0.0 4.4 5 1 1 6 6 6 0 Domain of unknown function (DUF4248) PPR PF01535.15 gi|312136790|ref|YP_004004127.1| - 0.92 9.6 6.1 28 4.9 0.0 5.2 6 0 0 6 6 6 0 PPR repeat Peptidase_A24 PF01478.13 gi|312136791|ref|YP_004004128.1| - 1.2 9.3 6.1 2.4 8.3 4.1 1.8 1 1 0 1 1 1 0 Type IV leader peptidase family Zn_dep_PLPC PF00882.13 gi|312136793|ref|YP_004004130.1| - 4.4e-18 65.4 0.8 5.5e-18 65.1 0.5 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF1689 PF07954.6 gi|312136793|ref|YP_004004130.1| - 0.021 14.6 1.4 0.33 10.8 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1689) DUF4184 PF13803.1 gi|312136793|ref|YP_004004130.1| - 0.04 13.2 0.0 1.5 8.0 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) PrmA PF06325.8 gi|312136794|ref|YP_004004131.1| - 5.5e-07 29.0 0.0 9.8e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|312136794|ref|YP_004004131.1| - 8.6e-07 29.0 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312136794|ref|YP_004004131.1| - 2.9e-06 26.7 0.0 4.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|312136794|ref|YP_004004131.1| - 0.00035 20.0 0.0 0.00085 18.7 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 TRM PF02005.11 gi|312136794|ref|YP_004004131.1| - 0.00051 19.0 0.0 0.00065 18.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|312136794|ref|YP_004004131.1| - 0.00083 18.9 0.1 0.0019 17.8 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|312136794|ref|YP_004004131.1| - 0.0036 16.9 0.0 0.0069 15.9 0.0 1.6 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|312136794|ref|YP_004004131.1| - 0.02 15.4 0.0 0.041 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AAA_31 PF13614.1 gi|312136794|ref|YP_004004131.1| - 0.055 13.4 0.2 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain PALP PF00291.20 gi|312136795|ref|YP_004004132.1| - 2.7e-40 138.5 0.0 3.2e-40 138.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Fae PF08714.6 gi|312136796|ref|YP_004004133.1| - 2e-68 229.1 0.1 3.6e-68 228.2 0.1 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|312136796|ref|YP_004004133.1| - 9.2e-27 93.9 1.4 9.2e-27 93.9 1.0 1.5 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|312136796|ref|YP_004004133.1| - 1e-05 24.9 2.2 0.00021 20.6 0.3 2.3 2 0 0 2 2 2 1 PcrB family Ribul_P_3_epim PF00834.14 gi|312136796|ref|YP_004004133.1| - 3.5e-05 22.9 1.0 6.4e-05 22.1 0.7 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PRAI PF00697.17 gi|312136796|ref|YP_004004133.1| - 0.0003 20.4 0.1 0.00081 18.9 0.1 1.8 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase QRPTase_C PF01729.14 gi|312136796|ref|YP_004004133.1| - 0.0007 19.1 1.4 0.0017 17.9 0.2 2.1 1 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.12 gi|312136796|ref|YP_004004133.1| - 0.0011 18.1 0.3 0.0026 16.9 0.2 1.6 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|312136796|ref|YP_004004133.1| - 0.0022 16.8 0.7 0.004 16.0 0.4 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|312136796|ref|YP_004004133.1| - 0.033 13.1 0.7 0.097 11.6 0.5 1.9 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|312136796|ref|YP_004004133.1| - 0.037 12.5 1.8 0.24 9.9 0.1 2.4 2 1 0 2 2 2 0 Tryptophan synthase alpha chain UvrB PF12344.3 gi|312136796|ref|YP_004004133.1| - 0.29 10.7 1.7 26 4.4 0.1 3.1 3 0 0 3 3 3 0 Ultra-violet resistance protein B FMN_red PF03358.10 gi|312136797|ref|YP_004004134.1| - 3.2e-30 104.6 0.0 3.8e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|312136797|ref|YP_004004134.1| - 9.5e-06 25.2 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|312136797|ref|YP_004004134.1| - 0.0061 16.1 0.2 0.008 15.7 0.1 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) AP_endonuc_2 PF01261.19 gi|312136798|ref|YP_004004135.1| - 3.7e-29 101.5 0.0 4.4e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DeoC PF01791.4 gi|312136798|ref|YP_004004135.1| - 0.0063 15.8 0.9 0.11 11.7 0.0 2.5 1 1 2 3 3 3 1 DeoC/LacD family aldolase Glyco_hydro_97 PF10566.4 gi|312136798|ref|YP_004004135.1| - 0.049 12.7 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 97 PTSIIB_sorb PF03830.10 gi|312136798|ref|YP_004004135.1| - 0.068 13.0 0.1 0.22 11.4 0.0 1.9 1 1 0 1 1 1 0 PTS system sorbose subfamily IIB component Sec61_beta PF03911.11 gi|312136799|ref|YP_004004136.1| - 7.4e-12 44.8 0.0 8.2e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family SKG6 PF08693.5 gi|312136799|ref|YP_004004136.1| - 0.58 9.5 3.6 0.9 8.9 2.5 1.3 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Lyase_1 PF00206.15 gi|312136800|ref|YP_004004137.1| - 8.8e-54 182.7 0.3 1.3e-53 182.2 0.2 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|312136800|ref|YP_004004137.1| - 2.1e-25 88.5 0.0 6.3e-25 86.9 0.0 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus VHS PF00790.14 gi|312136800|ref|YP_004004137.1| - 0.0035 16.9 0.6 0.012 15.2 0.4 1.8 1 1 0 1 1 1 1 VHS domain Abi PF02517.11 gi|312136801|ref|YP_004004138.1| - 3.4e-13 49.5 2.5 3.4e-13 49.5 1.7 2.9 2 1 1 3 3 3 1 CAAX protease self-immunity TctA PF01970.11 gi|312136803|ref|YP_004004140.1| - 4.5e-52 176.8 41.9 5.4e-52 176.6 29.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family TMEM191C PF15194.1 gi|312136803|ref|YP_004004140.1| - 9.4 6.1 9.0 1.2 9.0 2.1 2.4 1 1 1 2 2 2 0 TMEM191C family EF1_GNE PF00736.14 gi|312136804|ref|YP_004004141.1| - 2e-20 72.2 1.1 2.1e-20 72.1 0.8 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|312136804|ref|YP_004004141.1| - 0.12 12.5 1.0 0.68 10.1 0.2 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|312136805|ref|YP_004004142.1| - 0.026 14.6 17.4 0.088 12.9 1.9 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF1610) Tnp_zf-ribbon_2 PF13842.1 gi|312136805|ref|YP_004004142.1| - 0.036 14.4 11.7 3.6 8.0 8.1 2.2 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon tRNA-synt_1g PF09334.6 gi|312136805|ref|YP_004004142.1| - 0.16 10.5 1.5 0.15 10.6 1.0 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF4475 PF14753.1 gi|312136805|ref|YP_004004142.1| - 0.23 10.9 5.7 0.29 10.6 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4475) zf-Sec23_Sec24 PF04810.10 gi|312136805|ref|YP_004004142.1| - 0.67 9.5 17.0 0.49 10.0 2.4 3.4 2 2 1 3 3 3 0 Sec23/Sec24 zinc finger zf-FCS PF06467.9 gi|312136805|ref|YP_004004142.1| - 0.75 9.4 6.3 7.3 6.3 3.5 2.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HypA PF01155.14 gi|312136805|ref|YP_004004142.1| - 0.93 9.2 8.1 0.26 10.9 3.4 1.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|312136805|ref|YP_004004142.1| - 1.6 8.7 5.6 0.75 9.7 2.7 1.5 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Sgf11 PF08209.6 gi|312136805|ref|YP_004004142.1| - 1.9 7.8 11.1 4.6 6.6 0.3 3.3 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) C1_4 PF07975.7 gi|312136805|ref|YP_004004142.1| - 5.1 7.1 10.9 53 3.9 7.5 2.4 1 1 0 1 1 1 0 TFIIH C1-like domain DZR PF12773.2 gi|312136805|ref|YP_004004142.1| - 5.6 6.8 9.7 57 3.6 6.9 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|312136805|ref|YP_004004142.1| - 9 6.0 11.7 0.65 9.7 3.2 2.4 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) AA_kinase PF00696.23 gi|312136806|ref|YP_004004143.1| - 9.6e-19 67.8 0.0 5.3e-18 65.4 0.0 1.8 1 1 0 1 1 1 1 Amino acid kinase family Aconitase PF00330.15 gi|312136807|ref|YP_004004144.1| - 4.1e-90 302.4 8.5 3.5e-60 203.8 2.3 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|312136807|ref|YP_004004144.1| - 0.0061 15.1 0.0 0.01 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|312136808|ref|YP_004004145.1| - 8.4e-22 77.6 0.2 5.9e-20 71.7 0.4 2.3 1 1 1 2 2 2 2 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|312136808|ref|YP_004004145.1| - 1.6e-05 24.4 0.2 0.0019 17.6 0.2 2.0 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus Scm3 PF10384.4 gi|312136808|ref|YP_004004145.1| - 0.017 14.6 0.6 0.04 13.4 0.2 1.8 1 1 0 1 1 1 0 Centromere protein Scm3 Iso_dh PF00180.15 gi|312136809|ref|YP_004004146.1| - 8.5e-106 353.8 0.1 1e-105 353.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Dicty_CAD PF05720.7 gi|312136809|ref|YP_004004146.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Cell-cell adhesion domain Aminotran_5 PF00266.14 gi|312136810|ref|YP_004004147.1| - 5.6e-125 416.9 0.0 6.3e-125 416.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|312136810|ref|YP_004004147.1| - 4.3e-14 52.3 0.0 6.8e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|312136810|ref|YP_004004147.1| - 9.5e-14 51.1 0.4 6.5e-12 45.0 0.2 2.2 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|312136810|ref|YP_004004147.1| - 6.5e-07 27.9 0.1 2.8e-06 25.8 0.1 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SLA_LP_auto_ag PF05889.8 gi|312136810|ref|YP_004004147.1| - 1.8e-06 26.6 0.4 3e-06 25.9 0.1 1.5 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|312136810|ref|YP_004004147.1| - 0.00019 20.7 0.1 0.00055 19.1 0.0 1.8 1 1 1 2 2 2 1 Beta-eliminating lyase SPRY PF00622.23 gi|312136810|ref|YP_004004147.1| - 0.00044 20.3 0.1 0.067 13.2 0.0 2.3 2 0 0 2 2 2 1 SPRY domain GDC-P PF02347.11 gi|312136810|ref|YP_004004147.1| - 0.0022 16.7 0.3 0.0039 15.9 0.2 1.3 1 0 0 1 1 1 1 Glycine cleavage system P-protein Pyridoxal_deC PF00282.14 gi|312136810|ref|YP_004004147.1| - 0.073 11.5 0.0 0.14 10.6 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DMRL_synthase PF00885.14 gi|312136811|ref|YP_004004148.1| - 7.6e-40 135.9 0.6 8.3e-40 135.7 0.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF1743 PF08489.6 gi|312136812|ref|YP_004004149.1| - 4.9e-26 90.8 2.2 5.3e-25 87.4 0.1 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) UPF0058 PF01893.11 gi|312136813|ref|YP_004004150.1| - 8.4e-29 99.4 1.5 9.8e-29 99.2 1.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Histidinol_dh PF00815.15 gi|312136814|ref|YP_004004151.1| - 1.5e-170 567.2 0.7 1.7e-170 567.0 0.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF4387 PF14330.1 gi|312136814|ref|YP_004004151.1| - 0.048 14.0 0.0 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) MbeB_N PF04837.7 gi|312136814|ref|YP_004004151.1| - 7.9 6.6 6.6 0.81 9.8 0.1 2.6 3 0 0 3 3 3 0 MbeB-like, N-term conserved region tRNA-synt_2 PF00152.15 gi|312136815|ref|YP_004004152.1| - 8.9e-100 333.7 1.2 1.2e-99 333.3 0.8 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|312136815|ref|YP_004004152.1| - 5.4e-14 51.8 0.2 1.2e-13 50.7 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|312136815|ref|YP_004004152.1| - 0.00033 19.9 0.6 0.025 13.7 0.0 3.0 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|312136815|ref|YP_004004152.1| - 0.011 15.3 0.2 1.4 8.4 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) CbiC PF02570.10 gi|312136816|ref|YP_004004153.1| - 6.1e-63 211.8 0.4 6.9e-63 211.6 0.3 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase Peripla_BP_4 PF13407.1 gi|312136816|ref|YP_004004153.1| - 0.016 14.5 0.1 0.23 10.7 0.0 2.1 1 1 1 2 2 2 0 Periplasmic binding protein domain DUF4065 PF13274.1 gi|312136816|ref|YP_004004153.1| - 0.043 14.5 0.5 0.091 13.4 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) Aminotran_3 PF00202.16 gi|312136817|ref|YP_004004154.1| - 1.5e-74 250.8 0.0 2e-74 250.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|312136817|ref|YP_004004154.1| - 0.00059 18.8 0.0 0.00079 18.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II PTA_PTB PF01515.14 gi|312136818|ref|YP_004004155.1| - 7.6e-09 35.0 0.0 0.0015 17.6 0.0 2.3 2 1 0 2 2 2 2 Phosphate acetyl/butaryl transferase DUF1471 PF07338.8 gi|312136818|ref|YP_004004155.1| - 0.052 13.2 0.1 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Prenyltransf PF01255.14 gi|312136819|ref|YP_004004156.1| - 7e-90 300.0 0.6 8.2e-90 299.8 0.4 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase RNA_pol_Rpb1_6 PF04992.9 gi|312136819|ref|YP_004004156.1| - 0.0029 17.3 0.8 0.0044 16.7 0.6 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 6 Dpoe2NT PF12213.3 gi|312136819|ref|YP_004004156.1| - 0.018 14.9 0.2 0.043 13.7 0.2 1.7 1 0 0 1 1 1 0 DNA polymerases epsilon N terminal Seryl_tRNA_N PF02403.17 gi|312136819|ref|YP_004004156.1| - 5.1 7.1 11.3 12 6.0 7.2 2.0 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TatD_DNase PF01026.16 gi|312136820|ref|YP_004004157.1| - 6.7e-75 251.5 0.2 7.6e-75 251.3 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase PTPlike_phytase PF14566.1 gi|312136820|ref|YP_004004157.1| - 0.005 16.8 2.1 0.024 14.7 0.3 2.4 2 1 0 2 2 2 1 Inositol hexakisphosphate DUF2533 PF10752.4 gi|312136820|ref|YP_004004157.1| - 0.017 15.4 2.3 4.9 7.5 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2533) Amidohydro_2 PF04909.9 gi|312136820|ref|YP_004004157.1| - 0.13 11.8 0.0 1.3 8.4 0.0 2.2 1 1 0 1 1 1 0 Amidohydrolase RibD_C PF01872.12 gi|312136821|ref|YP_004004158.1| - 5.8e-66 221.9 0.2 6.5e-66 221.7 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DDR PF08841.5 gi|312136821|ref|YP_004004158.1| - 0.013 14.4 0.3 0.016 14.0 0.2 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain PHP PF02811.14 gi|312136822|ref|YP_004004159.1| - 5.1e-13 49.1 3.8 1.5e-12 47.6 2.4 1.8 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|312136822|ref|YP_004004159.1| - 3.6e-05 23.1 0.0 8.8e-05 21.9 0.0 1.7 1 0 0 1 1 1 1 PHP-associated RNase_P_p30 PF01876.11 gi|312136822|ref|YP_004004159.1| - 0.0012 18.0 0.0 0.017 14.3 0.0 2.2 1 1 0 1 1 1 1 RNase P subunit p30 GHMP_kinases_N PF00288.21 gi|312136823|ref|YP_004004160.1| - 1.4e-06 28.2 0.2 2.7e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|312136823|ref|YP_004004160.1| - 0.0081 16.3 0.2 0.021 15.0 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Tir_receptor_C PF07489.6 gi|312136823|ref|YP_004004160.1| - 0.086 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus DeoC PF01791.4 gi|312136824|ref|YP_004004161.1| - 5.2e-63 212.4 0.2 6.2e-63 212.2 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|312136824|ref|YP_004004161.1| - 1.9e-05 24.1 0.3 2.8e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|312136824|ref|YP_004004161.1| - 0.0013 17.8 0.0 1 8.4 0.1 2.5 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PucR PF07905.6 gi|312136824|ref|YP_004004161.1| - 0.0022 17.5 0.0 0.071 12.6 0.0 2.5 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family DUF561 PF04481.7 gi|312136824|ref|YP_004004161.1| - 0.005 15.8 0.1 0.023 13.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|312136824|ref|YP_004004161.1| - 0.031 13.3 3.0 0.041 12.9 0.3 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|312136824|ref|YP_004004161.1| - 0.038 12.8 0.1 9.7 4.9 0.0 3.0 2 1 1 3 3 3 0 Dihydrouridine synthase (Dus) PEP_mutase PF13714.1 gi|312136824|ref|YP_004004161.1| - 0.04 13.1 1.7 5.9 6.0 0.2 2.9 2 1 0 3 3 3 0 Phosphoenolpyruvate phosphomutase QRPTase_C PF01729.14 gi|312136824|ref|YP_004004161.1| - 0.12 11.8 0.8 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain HBS1_N PF08938.5 gi|312136824|ref|YP_004004161.1| - 0.15 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 HBS1 N-terminus DHQS PF01959.11 gi|312136825|ref|YP_004004162.1| - 2.4e-155 516.5 4.9 2.7e-155 516.4 3.4 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) DUF2577 PF10844.3 gi|312136825|ref|YP_004004162.1| - 0.0012 18.8 0.2 0.29 11.1 0.0 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF2577) Hint PF01079.15 gi|312136825|ref|YP_004004162.1| - 0.002 17.3 0.0 0.12 11.6 0.0 2.3 2 0 0 2 2 2 1 Hint module TRAM PF01938.15 gi|312136825|ref|YP_004004162.1| - 0.013 15.2 0.2 0.12 12.1 0.0 2.7 2 0 0 2 2 2 0 TRAM domain OapA PF04225.7 gi|312136825|ref|YP_004004162.1| - 0.016 15.0 0.1 2.7 7.9 0.0 2.7 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain Response_reg PF00072.19 gi|312136825|ref|YP_004004162.1| - 0.061 13.3 0.1 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Response regulator receiver domain LigT_PEase PF02834.11 gi|312136826|ref|YP_004004163.1| - 1.2e-32 111.7 0.1 9.7e-19 67.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|312136826|ref|YP_004004163.1| - 1.6e-15 57.1 0.0 2e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|312136826|ref|YP_004004163.1| - 9.9e-13 48.2 1.2 1.4e-12 47.7 0.8 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain DNA_pol3_a_NI PF14480.1 gi|312136826|ref|YP_004004163.1| - 0.41 10.3 8.3 0.078 12.6 1.5 2.7 2 2 1 3 3 3 0 DNA polymerase III polC-type N-terminus I GnsAB PF08178.6 gi|312136826|ref|YP_004004163.1| - 5.6 6.6 7.3 2.3 7.9 0.1 2.9 3 0 0 3 3 3 0 GnsA/GnsB family tRNA_NucTransf2 PF09249.6 gi|312136827|ref|YP_004004164.1| - 1.4e-45 153.8 0.0 2.6e-45 152.9 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|312136827|ref|YP_004004164.1| - 2.3e-14 53.4 1.2 2.3e-13 50.2 0.0 3.1 3 1 1 4 4 4 1 Nucleotidyltransferase domain DNA_primase_S PF01896.14 gi|312136828|ref|YP_004004165.1| - 9e-20 70.9 2.2 9.3e-20 70.9 0.8 1.5 2 0 0 2 2 2 1 Eukaryotic and archaeal DNA primase small subunit DUF1640 PF07798.6 gi|312136828|ref|YP_004004165.1| - 0.27 11.2 1.3 0.54 10.2 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1640) DNA_primase_lrg PF04104.9 gi|312136829|ref|YP_004004166.1| - 3.3e-18 65.8 0.3 4.1e-17 62.3 0.2 2.3 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit AF0941-like PF14591.1 gi|312136829|ref|YP_004004166.1| - 0.21 11.6 4.0 0.54 10.3 2.8 1.7 1 1 0 1 1 1 0 AF0941-like tRNA-synt_1g PF09334.6 gi|312136830|ref|YP_004004167.1| - 2.4e-167 556.5 0.6 3.2e-167 556.1 0.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|312136830|ref|YP_004004167.1| - 1e-21 76.6 9.2 5e-10 38.0 0.1 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|312136830|ref|YP_004004167.1| - 4.4e-14 52.3 0.1 5.2e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|312136830|ref|YP_004004167.1| - 6.8e-05 21.8 0.3 0.024 13.4 0.0 2.5 1 1 1 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|312136830|ref|YP_004004167.1| - 0.00025 19.8 0.9 0.0032 16.1 0.7 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) zinc-ribbons_6 PF07191.7 gi|312136830|ref|YP_004004167.1| - 0.079 12.7 4.0 0.16 11.7 2.8 1.5 1 0 0 1 1 1 0 zinc-ribbons PHF5 PF03660.9 gi|312136830|ref|YP_004004167.1| - 0.74 9.8 5.2 0.44 10.6 0.8 2.2 1 1 1 2 2 2 0 PHF5-like protein zinc_ribbon_2 PF13240.1 gi|312136830|ref|YP_004004167.1| - 2.2 7.8 6.2 2.7 7.6 1.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|312136830|ref|YP_004004167.1| - 2.5 7.9 7.6 11 5.9 5.3 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF530 PF04409.7 gi|312136831|ref|YP_004004168.1| - 6.2e-129 430.3 35.4 7.4e-129 430.1 24.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF530) HTH_23 PF13384.1 gi|312136832|ref|YP_004004169.1| - 2.3e-13 49.3 0.2 2.8e-06 26.7 0.1 2.7 3 0 0 3 3 3 2 Homeodomain-like domain HTH_7 PF02796.10 gi|312136832|ref|YP_004004169.1| - 9.1e-12 44.6 6.0 1e-05 25.3 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|312136832|ref|YP_004004169.1| - 7e-10 38.7 1.8 5.4e-05 23.1 0.0 3.2 3 0 0 3 3 3 2 Helix-turn-helix domain GerE PF00196.14 gi|312136832|ref|YP_004004169.1| - 2.3e-06 26.8 0.2 0.012 14.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|312136832|ref|YP_004004169.1| - 8e-06 25.3 0.0 0.0026 17.2 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|312136832|ref|YP_004004169.1| - 1.7e-05 24.9 0.6 1.5 9.0 0.1 3.1 2 1 1 3 3 3 3 Winged helix-turn helix TrmB PF01978.14 gi|312136832|ref|YP_004004169.1| - 1.8e-05 24.3 3.6 0.017 14.7 0.1 3.2 3 1 1 4 4 3 2 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|312136832|ref|YP_004004169.1| - 2.5e-05 23.6 0.0 0.17 11.3 0.0 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_11 PF08279.7 gi|312136832|ref|YP_004004169.1| - 0.0001 21.8 0.5 0.48 10.1 0.0 3.0 3 0 0 3 3 3 2 HTH domain HTH_24 PF13412.1 gi|312136832|ref|YP_004004169.1| - 0.00015 21.0 0.9 0.16 11.4 0.0 3.8 4 1 0 4 4 4 1 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|312136832|ref|YP_004004169.1| - 0.00036 20.0 0.1 0.65 9.5 0.0 2.7 3 0 0 3 3 2 2 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.1 gi|312136832|ref|YP_004004169.1| - 0.00054 19.6 7.4 0.0092 15.7 0.3 3.8 2 1 1 3 3 3 2 MerR HTH family regulatory protein HTH_40 PF14493.1 gi|312136832|ref|YP_004004169.1| - 0.001 19.2 0.2 2.6 8.3 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain AT_hook PF02178.14 gi|312136832|ref|YP_004004169.1| - 0.0014 18.0 4.7 0.0071 15.8 3.3 2.3 1 0 0 1 1 1 1 AT hook motif HTH_32 PF13565.1 gi|312136832|ref|YP_004004169.1| - 0.0016 19.2 3.8 1.1 10.0 0.2 3.0 2 1 1 3 3 3 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|312136832|ref|YP_004004169.1| - 0.0033 17.0 0.6 0.51 10.0 0.1 2.6 1 1 2 3 3 3 1 Transposase HTH_20 PF12840.2 gi|312136832|ref|YP_004004169.1| - 0.0049 16.6 0.0 1.6 8.5 0.0 2.9 4 0 0 4 4 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|312136832|ref|YP_004004169.1| - 0.0056 16.5 0.3 1.5 8.7 0.0 3.0 3 0 0 3 3 2 1 Helix-turn-helix CENP-B_N PF04218.8 gi|312136832|ref|YP_004004169.1| - 0.014 14.7 1.8 0.67 9.4 0.1 2.8 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Sigma70_r4 PF04545.11 gi|312136832|ref|YP_004004169.1| - 0.016 14.5 0.0 4.6 6.6 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|312136832|ref|YP_004004169.1| - 0.018 15.2 9.8 0.046 13.9 0.1 3.7 4 1 0 4 4 3 0 Helix-turn-helix domain CPSase_L_D3 PF02787.14 gi|312136832|ref|YP_004004169.1| - 0.027 14.2 0.3 1 9.1 0.1 2.1 1 1 1 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF1699 PF08004.6 gi|312136832|ref|YP_004004169.1| - 0.03 13.8 0.6 1.2 8.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1699) HTH_10 PF04967.7 gi|312136832|ref|YP_004004169.1| - 0.035 13.6 0.0 0.4 10.3 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain DinI PF06183.8 gi|312136832|ref|YP_004004169.1| - 0.036 14.0 0.1 5.1 7.1 0.0 2.4 2 0 0 2 2 2 0 DinI-like family HTH_Tnp_1 PF01527.15 gi|312136832|ref|YP_004004169.1| - 0.05 13.5 0.3 4.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Transposase HTH_26 PF13443.1 gi|312136832|ref|YP_004004169.1| - 0.063 13.4 2.5 0.56 10.4 0.1 2.7 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Trp_repressor PF01371.14 gi|312136832|ref|YP_004004169.1| - 0.095 12.6 0.1 3.4 7.6 0.0 2.4 1 1 1 2 2 2 0 Trp repressor protein DDE_5 PF13546.1 gi|312136832|ref|YP_004004169.1| - 0.23 10.2 3.3 3.9 6.2 0.7 2.1 1 1 1 2 2 2 0 DDE superfamily endonuclease Glycos_transf_4 PF00953.16 gi|312136833|ref|YP_004004170.1| - 7.3e-28 97.3 19.3 7.3e-28 97.3 13.4 2.7 2 1 0 2 2 2 1 Glycosyl transferase family 4 TPR_12 PF13424.1 gi|312136834|ref|YP_004004171.1| - 1.7e-09 37.4 2.6 1.9e-06 27.6 0.5 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|312136834|ref|YP_004004171.1| - 5.6e-08 32.1 6.0 0.078 12.9 0.1 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|312136834|ref|YP_004004171.1| - 6.7e-06 25.6 6.9 0.2 11.3 0.1 3.3 2 1 1 3 3 3 3 TPR repeat TPR_7 PF13176.1 gi|312136834|ref|YP_004004171.1| - 0.00014 21.3 0.4 0.043 13.6 0.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|312136834|ref|YP_004004171.1| - 0.00027 20.4 10.1 0.53 10.1 0.4 4.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|312136834|ref|YP_004004171.1| - 0.0011 18.4 5.5 0.42 10.3 0.1 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|312136834|ref|YP_004004171.1| - 0.0042 17.0 0.1 0.036 13.9 0.0 2.3 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|312136834|ref|YP_004004171.1| - 0.0055 17.3 0.2 0.038 14.6 0.1 2.4 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|312136834|ref|YP_004004171.1| - 0.0062 16.6 1.0 0.65 10.1 0.0 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|312136834|ref|YP_004004171.1| - 0.04 13.8 0.0 0.78 9.7 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat AP_endonuc_2 PF01261.19 gi|312136834|ref|YP_004004171.1| - 0.051 12.8 0.1 1.3 8.2 0.0 2.4 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Hanta_G1 PF01567.11 gi|312136834|ref|YP_004004171.1| - 0.072 11.3 0.0 0.086 11.0 0.0 1.1 1 0 0 1 1 1 0 Hantavirus glycoprotein G1 HGD-D PF06050.8 gi|312136834|ref|YP_004004171.1| - 0.077 11.7 1.5 0.14 10.9 1.1 1.5 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component nsp9 PF08710.5 gi|312136834|ref|YP_004004171.1| - 0.083 13.0 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 nsp9 replicase TALPID3 PF15324.1 gi|312136834|ref|YP_004004171.1| - 0.1 9.9 5.6 0.13 9.6 3.9 1.1 1 0 0 1 1 1 0 Hedgehog signalling target Vps39_1 PF10366.4 gi|312136834|ref|YP_004004171.1| - 0.11 12.5 3.1 0.17 11.9 1.2 2.0 1 1 0 1 1 1 0 Vacuolar sorting protein 39 domain 1 TPR_14 PF13428.1 gi|312136834|ref|YP_004004171.1| - 0.15 12.7 0.0 6.8 7.6 0.0 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat Tho2 PF11262.3 gi|312136834|ref|YP_004004171.1| - 0.27 10.2 6.4 0.038 13.0 1.4 1.8 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Death PF00531.17 gi|312136834|ref|YP_004004171.1| - 0.45 10.3 3.7 9.7 6.0 0.0 3.4 4 0 0 4 4 3 0 Death domain ApoL PF05461.6 gi|312136834|ref|YP_004004171.1| - 1.1 8.4 3.3 1.6 7.9 2.3 1.3 1 0 0 1 1 1 0 Apolipoprotein L TFIIA_gamma_N PF02268.11 gi|312136834|ref|YP_004004171.1| - 1.5 8.4 4.8 6.2 6.4 0.1 3.6 3 1 1 4 4 4 0 Transcription initiation factor IIA, gamma subunit, helical domain ThylakoidFormat PF11264.3 gi|312136834|ref|YP_004004171.1| - 2.4 7.7 10.5 1.2 8.7 4.1 2.2 2 0 0 2 2 2 0 Thylakoid formation protein KaiC PF06745.8 gi|312136835|ref|YP_004004172.1| - 8.4e-31 106.8 0.0 1e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|312136835|ref|YP_004004172.1| - 1.5e-05 24.5 0.3 2.3e-05 23.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.1 gi|312136835|ref|YP_004004172.1| - 7.6e-05 22.1 0.1 0.00014 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|312136835|ref|YP_004004172.1| - 0.02 14.3 0.0 0.55 9.6 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|312136835|ref|YP_004004172.1| - 0.033 14.1 0.1 0.52 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|312136835|ref|YP_004004172.1| - 0.054 12.5 0.0 0.072 12.1 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein EKR PF10371.4 gi|312136835|ref|YP_004004172.1| - 0.061 12.8 0.0 0.7 9.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function HhH-GPD PF00730.20 gi|312136836|ref|YP_004004173.1| - 4.3e-30 104.1 0.4 7.5e-30 103.4 0.1 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|312136836|ref|YP_004004173.1| - 6.7e-11 41.2 0.2 1.4e-09 37.1 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|312136836|ref|YP_004004173.1| - 0.00013 22.0 0.6 0.0063 16.6 0.4 2.5 1 1 0 1 1 1 1 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|312136836|ref|YP_004004173.1| - 0.00013 21.7 0.8 0.0027 17.4 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2400) HHH_2 PF12826.2 gi|312136836|ref|YP_004004173.1| - 0.00031 20.5 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF3349 PF11829.3 gi|312136836|ref|YP_004004173.1| - 0.00048 20.4 0.1 0.0013 19.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) HRDC PF00570.18 gi|312136836|ref|YP_004004173.1| - 0.00066 19.3 0.4 1 9.1 0.0 2.7 3 0 0 3 3 3 2 HRDC domain EndIII_4Fe-2S PF10576.4 gi|312136836|ref|YP_004004173.1| - 0.0037 17.4 4.0 0.0066 16.5 2.7 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF1886 PF09171.5 gi|312136836|ref|YP_004004173.1| - 0.019 14.0 1.4 0.79 8.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1886) Cdd1 PF11731.3 gi|312136836|ref|YP_004004173.1| - 0.037 13.9 0.4 1.7 8.5 0.0 3.3 2 1 1 3 3 3 0 Pathogenicity locus HHH_8 PF14716.1 gi|312136836|ref|YP_004004173.1| - 0.075 13.2 0.1 1.4 9.1 0.0 2.7 2 1 1 3 3 3 0 Helix-hairpin-helix domain Ku_PK_bind PF08785.6 gi|312136836|ref|YP_004004173.1| - 0.09 12.6 1.7 0.18 11.7 0.6 2.0 2 0 0 2 2 2 0 Ku C terminal domain like DHH PF01368.15 gi|312136837|ref|YP_004004174.1| - 6.8e-11 42.0 0.0 1.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|312136837|ref|YP_004004174.1| - 2.9e-10 39.8 0.6 9.1e-10 38.2 0.1 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|312136837|ref|YP_004004174.1| - 8.6e-05 22.5 23.6 0.0023 17.9 0.9 2.9 2 1 1 3 3 3 3 DnaJ central domain zf-ribbon_3 PF13248.1 gi|312136837|ref|YP_004004174.1| - 0.00059 18.9 11.2 0.0039 16.3 1.7 2.8 2 0 0 2 2 2 2 zinc-ribbon domain Rep_fac-A_3 PF08661.6 gi|312136837|ref|YP_004004174.1| - 0.0012 18.7 0.2 0.0031 17.3 0.2 1.6 1 0 0 1 1 1 1 Replication factor A protein 3 S1 PF00575.18 gi|312136837|ref|YP_004004174.1| - 0.0012 18.8 1.4 0.0012 18.8 1.0 3.7 4 1 0 4 4 4 1 S1 RNA binding domain DUF3560 PF12083.3 gi|312136837|ref|YP_004004174.1| - 0.14 12.2 0.0 0.71 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3560) DZR PF12773.2 gi|312136837|ref|YP_004004174.1| - 0.16 11.7 17.0 0.036 13.8 1.1 2.8 1 1 1 2 2 2 0 Double zinc ribbon MFS_1 PF07690.11 gi|312136838|ref|YP_004004175.1| - 1.3e-28 99.7 72.5 9.5e-22 77.1 25.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily TMEM238 PF15125.1 gi|312136838|ref|YP_004004175.1| - 0.88 9.5 11.0 0.11 12.3 3.4 2.8 2 0 0 2 2 2 0 TMEM238 protein family BPL_N PF09825.4 gi|312136839|ref|YP_004004176.1| - 1.2e-11 43.9 0.3 4.7e-07 28.9 0.0 3.0 3 0 0 3 3 3 2 Biotin-protein ligase, N terminal PMBR PF09373.5 gi|312136839|ref|YP_004004176.1| - 2.1e-10 40.0 10.5 4.2e-07 29.6 0.1 5.3 5 0 0 5 5 5 2 Pseudomurein-binding repeat Lact_bio_phlase PF09508.5 gi|312136839|ref|YP_004004176.1| - 7.3e-07 27.2 0.1 1.2e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Lacto-N-biose phosphorylase ThuA PF06283.6 gi|312136839|ref|YP_004004176.1| - 0.0033 17.1 0.0 0.0059 16.3 0.0 1.4 1 0 0 1 1 1 1 Trehalose utilisation DJ-1_PfpI PF01965.19 gi|312136839|ref|YP_004004176.1| - 0.0076 15.7 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|312136839|ref|YP_004004176.1| - 0.088 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I NMT1_2 PF13379.1 gi|312136840|ref|YP_004004177.1| - 5.2e-56 189.8 0.3 6.7e-56 189.4 0.2 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|312136840|ref|YP_004004177.1| - 4.8e-43 147.2 0.4 6.4e-43 146.8 0.3 1.2 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.7 gi|312136840|ref|YP_004004177.1| - 2.4e-13 50.0 0.1 3.8e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.2 gi|312136840|ref|YP_004004177.1| - 7.2e-13 48.4 0.0 1.5e-12 47.4 0.0 1.6 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lipoprotein_9 PF03180.9 gi|312136840|ref|YP_004004177.1| - 1.7e-11 43.4 0.0 5e-06 25.6 0.0 2.2 1 1 1 2 2 2 2 NLPA lipoprotein SBP_bac_3 PF00497.15 gi|312136840|ref|YP_004004177.1| - 2.5e-10 40.0 0.0 6.5e-10 38.6 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF3834 PF12916.2 gi|312136840|ref|YP_004004177.1| - 7.4e-06 25.1 1.1 1.6e-05 24.0 0.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) PBP_like PF12727.2 gi|312136840|ref|YP_004004177.1| - 0.00059 18.8 0.0 0.0026 16.7 0.0 1.9 1 1 1 2 2 2 1 PBP superfamily domain VitK2_biosynth PF02621.9 gi|312136840|ref|YP_004004177.1| - 0.0039 16.4 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 1 Menaquinone biosynthesis YhfZ_C PF14503.1 gi|312136840|ref|YP_004004177.1| - 0.009 15.3 0.1 0.023 14.0 0.1 1.7 1 1 0 1 1 1 1 YhfZ C-terminal domain SBP_bac_11 PF13531.1 gi|312136840|ref|YP_004004177.1| - 0.034 13.7 0.0 0.07 12.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|312136841|ref|YP_004004178.1| - 6.2e-23 81.2 11.9 6.2e-23 81.2 8.3 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Adenosine_kin PF04008.9 gi|312136841|ref|YP_004004178.1| - 0.094 12.2 0.1 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenosine specific kinase ABC_tran PF00005.22 gi|312136842|ref|YP_004004179.1| - 2.4e-35 121.8 0.0 6.1e-35 120.5 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|312136842|ref|YP_004004179.1| - 1.8e-13 51.1 0.0 3.4e-06 27.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|312136842|ref|YP_004004179.1| - 9.7e-07 28.1 0.2 0.027 13.5 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|312136842|ref|YP_004004179.1| - 3.9e-06 26.9 0.0 5.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|312136842|ref|YP_004004179.1| - 4.2e-06 26.6 0.1 2e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|312136842|ref|YP_004004179.1| - 4e-05 23.7 0.1 0.0003 20.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|312136842|ref|YP_004004179.1| - 4.7e-05 22.6 0.0 8.4e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|312136842|ref|YP_004004179.1| - 0.00016 20.3 0.1 0.079 11.5 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|312136842|ref|YP_004004179.1| - 0.0007 20.4 1.1 0.0045 17.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|312136842|ref|YP_004004179.1| - 0.00076 19.6 0.2 0.0032 17.6 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|312136842|ref|YP_004004179.1| - 0.00085 19.2 0.1 0.0033 17.3 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|312136842|ref|YP_004004179.1| - 0.00098 19.4 0.7 0.00098 19.4 0.5 1.9 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|312136842|ref|YP_004004179.1| - 0.0012 18.5 0.1 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 NACHT domain Miro PF08477.8 gi|312136842|ref|YP_004004179.1| - 0.0032 17.9 0.1 0.0061 17.0 0.1 1.8 1 1 0 1 1 1 1 Miro-like protein SMC_N PF02463.14 gi|312136842|ref|YP_004004179.1| - 0.0033 16.7 0.1 0.18 11.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|312136842|ref|YP_004004179.1| - 0.0042 17.0 0.0 0.0083 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|312136842|ref|YP_004004179.1| - 0.0046 16.4 0.0 0.0052 16.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.10 gi|312136842|ref|YP_004004179.1| - 0.0055 15.4 0.3 0.0089 14.7 0.0 1.4 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|312136842|ref|YP_004004179.1| - 0.0084 16.4 0.9 0.018 15.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|312136842|ref|YP_004004179.1| - 0.012 15.3 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|312136842|ref|YP_004004179.1| - 0.013 15.2 0.0 0.047 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|312136842|ref|YP_004004179.1| - 0.021 14.3 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|312136842|ref|YP_004004179.1| - 0.021 14.2 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|312136842|ref|YP_004004179.1| - 0.025 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|312136842|ref|YP_004004179.1| - 0.036 13.5 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|312136842|ref|YP_004004179.1| - 0.05 13.7 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|312136842|ref|YP_004004179.1| - 0.051 13.0 0.1 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|312136842|ref|YP_004004179.1| - 0.06 12.2 0.0 0.082 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|312136842|ref|YP_004004179.1| - 0.069 13.0 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|312136842|ref|YP_004004179.1| - 0.09 11.2 0.1 0.26 9.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|312136842|ref|YP_004004179.1| - 0.094 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|312136842|ref|YP_004004179.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|312136842|ref|YP_004004179.1| - 0.13 11.8 0.1 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RHH_1 PF01402.16 gi|312136843|ref|YP_004004180.1| - 0.0054 16.5 1.4 8.5 6.4 0.0 4.0 4 1 0 4 4 4 2 Ribbon-helix-helix protein, copG family DNA_pol3_delta PF06144.8 gi|312136843|ref|YP_004004180.1| - 0.22 11.0 4.3 0.49 9.8 0.2 2.1 1 1 0 2 2 2 0 DNA polymerase III, delta subunit DUF16 PF01519.11 gi|312136843|ref|YP_004004180.1| - 0.62 10.3 4.5 1.8 8.8 3.1 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 Asn_synthase PF00733.16 gi|312136844|ref|YP_004004181.1| - 2.3e-57 194.4 0.3 3.2e-57 193.9 0.2 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|312136844|ref|YP_004004181.1| - 2e-21 76.0 0.0 4.8e-21 74.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|312136844|ref|YP_004004181.1| - 6.7e-17 61.6 0.0 2.7e-16 59.7 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|312136844|ref|YP_004004181.1| - 1.5e-08 33.7 0.0 0.023 13.4 0.0 3.3 1 1 2 3 3 3 3 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|312136844|ref|YP_004004181.1| - 3.1e-05 23.0 0.2 0.00018 20.5 0.1 2.0 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|312136844|ref|YP_004004181.1| - 0.0031 16.8 0.0 0.0064 15.7 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|312136844|ref|YP_004004181.1| - 0.071 12.1 0.2 0.12 11.4 0.2 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase MIP PF00230.15 gi|312136845|ref|YP_004004182.1| - 0.0045 16.4 1.4 0.0061 16.0 1.0 1.1 1 0 0 1 1 1 1 Major intrinsic protein DUF4257 PF14074.1 gi|312136845|ref|YP_004004182.1| - 0.53 9.9 3.8 0.92 9.2 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4257) Hum_adeno_E3A PF05393.6 gi|312136845|ref|YP_004004182.1| - 0.67 9.6 2.3 1.4 8.5 0.4 2.1 1 1 0 2 2 2 0 Human adenovirus early E3A glycoprotein Abi PF02517.11 gi|312136845|ref|YP_004004182.1| - 0.88 9.7 5.5 1.7 8.8 0.8 2.1 1 1 1 2 2 2 0 CAAX protease self-immunity DUF1072 PF06380.6 gi|312136845|ref|YP_004004182.1| - 2 8.1 0.0 2 8.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) SUR7 PF06687.7 gi|312136845|ref|YP_004004182.1| - 2.1 7.8 8.5 4.3 6.8 1.1 2.2 2 0 0 2 2 2 0 SUR7/PalI family PDH PF02153.12 gi|312136846|ref|YP_004004183.1| - 5.1e-66 222.1 3.7 5.1e-66 222.1 2.5 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|312136846|ref|YP_004004183.1| - 4.8e-13 49.3 1.8 8.8e-13 48.5 0.1 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|312136846|ref|YP_004004183.1| - 8.5e-11 41.9 0.4 4.8e-10 39.5 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|312136846|ref|YP_004004183.1| - 9.8e-10 38.0 0.1 3.3e-09 36.3 0.1 1.9 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FDX-ACB PF03147.9 gi|312136846|ref|YP_004004183.1| - 4.4e-07 29.9 0.1 3.1e-06 27.2 0.0 2.5 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain Shikimate_DH PF01488.15 gi|312136846|ref|YP_004004183.1| - 5.1e-05 23.3 5.0 0.00012 22.1 0.1 3.2 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|312136846|ref|YP_004004183.1| - 0.00027 20.3 0.2 0.0011 18.3 0.1 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA CoA_binding_2 PF13380.1 gi|312136846|ref|YP_004004183.1| - 0.00042 20.4 0.6 0.097 12.8 0.1 2.5 1 1 0 2 2 2 1 CoA binding domain THF_DHG_CYH_C PF02882.14 gi|312136846|ref|YP_004004183.1| - 0.00067 18.7 0.3 0.0099 14.9 0.2 2.5 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Semialdhyde_dh PF01118.19 gi|312136846|ref|YP_004004183.1| - 0.0014 18.8 0.9 0.01 16.1 0.1 2.4 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|312136846|ref|YP_004004183.1| - 0.0014 18.3 5.3 0.0081 15.9 0.6 3.2 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|312136846|ref|YP_004004183.1| - 0.0035 17.3 0.1 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 NADH(P)-binding Rossmann-like PF10727.4 gi|312136846|ref|YP_004004183.1| - 0.02 14.6 0.0 0.056 13.1 0.0 1.7 1 0 0 1 1 1 0 Rossmann-like domain NmrA PF05368.8 gi|312136846|ref|YP_004004183.1| - 0.02 14.1 1.3 0.081 12.1 0.0 2.5 2 1 1 3 3 3 0 NmrA-like family adh_short PF00106.20 gi|312136846|ref|YP_004004183.1| - 0.022 14.6 0.0 0.062 13.2 0.0 1.8 1 0 0 1 1 1 0 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|312136846|ref|YP_004004183.1| - 0.033 14.6 0.1 0.13 12.8 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|312136846|ref|YP_004004183.1| - 0.055 13.0 0.1 0.52 9.8 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DUF2642 PF10842.3 gi|312136846|ref|YP_004004183.1| - 0.076 12.5 0.1 0.18 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) STT3 PF02516.9 gi|312136847|ref|YP_004004184.1| - 6e-59 200.2 53.1 5.1e-58 197.2 33.3 3.4 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|312136847|ref|YP_004004184.1| - 6.9e-06 26.0 16.3 6.9e-06 26.0 11.3 2.8 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TPP_enzyme_N PF02776.13 gi|312136848|ref|YP_004004185.1| - 7.2e-53 178.5 0.0 4.2e-51 172.8 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|312136848|ref|YP_004004185.1| - 1.3e-48 164.4 0.0 4.2e-48 162.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|312136848|ref|YP_004004185.1| - 8.2e-24 83.9 0.0 1.8e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Ada3 PF10198.4 gi|312136848|ref|YP_004004185.1| - 0.018 14.7 1.7 0.043 13.5 1.2 1.6 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DXP_synthase_N PF13292.1 gi|312136848|ref|YP_004004185.1| - 0.034 13.0 1.1 0.068 12.0 0.0 2.1 3 0 0 3 3 3 0 1-deoxy-D-xylulose-5-phosphate synthase Ku_PK_bind PF08785.6 gi|312136848|ref|YP_004004185.1| - 0.046 13.6 0.2 0.098 12.5 0.2 1.5 1 0 0 1 1 1 0 Ku C terminal domain like Oxidored_q4 PF00507.14 gi|312136849|ref|YP_004004186.1| - 0.42 10.4 7.7 0.59 9.9 5.3 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF443 PF04276.7 gi|312136849|ref|YP_004004186.1| - 0.52 9.7 7.9 0.61 9.4 5.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF443) DUF2207 PF09972.4 gi|312136849|ref|YP_004004186.1| - 5.9 5.3 6.0 6.1 5.3 4.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Oxidored_q6 PF01058.17 gi|312136850|ref|YP_004004187.1| - 6.9e-32 109.8 0.2 8.2e-32 109.5 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|312136851|ref|YP_004004188.1| - 9e-48 162.6 0.0 7.7e-32 110.3 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|312136851|ref|YP_004004188.1| - 7e-16 58.3 0.0 1.6e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|312136851|ref|YP_004004188.1| - 3.7e-15 55.6 2.1 9.8e-12 44.3 0.0 3.4 4 0 0 4 4 4 3 Nickel-dependent hydrogenase DOG1 PF14144.1 gi|312136851|ref|YP_004004188.1| - 0.2 11.7 1.1 4 7.5 0.4 2.8 2 0 0 2 2 2 0 Seed dormancy control NADHdh PF00146.16 gi|312136852|ref|YP_004004189.1| - 8.4e-45 153.1 24.9 9.6e-45 152.9 17.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|312136853|ref|YP_004004190.1| - 1.3e-15 56.2 13.5 1e-08 34.3 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312136853|ref|YP_004004190.1| - 3.1e-11 43.3 28.9 4.7e-07 29.9 7.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136853|ref|YP_004004190.1| - 4.8e-11 42.8 8.7 8.1e-11 42.1 6.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136853|ref|YP_004004190.1| - 4.2e-10 39.0 12.2 8.6e-06 25.4 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136853|ref|YP_004004190.1| - 8e-10 38.4 7.8 5.4e-06 26.1 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136853|ref|YP_004004190.1| - 2e-09 38.0 16.5 9.9e-07 29.4 6.0 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|312136853|ref|YP_004004190.1| - 3.4e-08 32.9 12.0 0.00063 19.5 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136853|ref|YP_004004190.1| - 5e-08 32.6 21.8 3e-06 26.9 7.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136853|ref|YP_004004190.1| - 5.8e-06 26.2 20.0 0.00049 20.0 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136853|ref|YP_004004190.1| - 3.7e-05 23.9 9.7 0.00017 21.8 6.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136853|ref|YP_004004190.1| - 0.00024 21.4 15.7 0.013 16.0 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|312136853|ref|YP_004004190.1| - 0.00069 19.7 15.0 0.037 14.3 1.9 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312136853|ref|YP_004004190.1| - 0.067 13.6 13.9 0.17 12.3 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136853|ref|YP_004004190.1| - 0.071 13.6 11.1 0.11 13.1 0.2 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312136853|ref|YP_004004190.1| - 0.11 12.8 10.4 0.37 11.2 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Oxidored_q2 PF00420.19 gi|312136855|ref|YP_004004192.1| - 0.00012 21.5 6.8 0.00014 21.3 4.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2160 PF09928.4 gi|312136855|ref|YP_004004192.1| - 2.6 8.1 8.0 6.5 6.9 5.5 1.7 1 1 0 1 1 1 0 Predicted small integral membrane protein (DUF2160) Oxidored_q1 PF00361.15 gi|312136856|ref|YP_004004193.1| - 1e-63 215.1 24.3 1e-63 215.1 16.9 4.0 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|312136856|ref|YP_004004193.1| - 1.1e-07 31.2 3.5 1.1e-07 31.2 2.4 3.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|312136857|ref|YP_004004194.1| - 1.2e-34 119.7 25.3 1.2e-34 119.7 17.5 3.1 2 2 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains SurE PF01975.12 gi|312136858|ref|YP_004004195.1| - 3.6e-60 202.6 0.1 4.4e-60 202.3 0.1 1.0 1 0 0 1 1 1 1 Survival protein SurE Aminotran_4 PF01063.14 gi|312136859|ref|YP_004004196.1| - 3.9e-48 163.9 0.0 4.6e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV DUF429 PF04250.8 gi|312136860|ref|YP_004004197.1| - 5.1e-22 78.1 0.0 1.1e-20 73.8 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) PP1 PF07430.6 gi|312136860|ref|YP_004004197.1| - 0.046 13.2 0.2 0.063 12.8 0.2 1.2 1 0 0 1 1 1 0 Phloem filament protein PP1 Fer4_6 PF12837.2 gi|312136861|ref|YP_004004198.1| - 8.1e-12 44.4 17.5 4.2e-07 29.5 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136861|ref|YP_004004198.1| - 3.8e-10 40.0 39.2 6.7e-06 26.3 11.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312136861|ref|YP_004004198.1| - 4.2e-10 38.7 20.0 4.7e-07 29.1 3.1 3.0 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136861|ref|YP_004004198.1| - 2.1e-08 33.8 28.3 2.5e-06 27.1 10.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136861|ref|YP_004004198.1| - 1.5e-07 31.5 25.0 9.9e-07 28.9 10.0 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312136861|ref|YP_004004198.1| - 1.7e-07 31.0 15.3 0.0008 19.5 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|312136861|ref|YP_004004198.1| - 2.4e-07 31.3 10.1 0.00061 20.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|312136861|ref|YP_004004198.1| - 3.7e-07 29.6 15.8 0.002 17.9 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312136861|ref|YP_004004198.1| - 1.9e-05 24.5 9.7 0.0012 18.8 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312136861|ref|YP_004004198.1| - 3.6e-05 23.5 15.4 0.00026 20.8 10.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136861|ref|YP_004004198.1| - 0.00022 21.5 19.0 0.057 14.0 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312136861|ref|YP_004004198.1| - 0.0014 19.0 12.0 0.054 13.9 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312136861|ref|YP_004004198.1| - 0.0026 17.6 8.1 0.0036 17.1 5.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|312136861|ref|YP_004004198.1| - 0.013 15.1 7.3 0.014 15.0 5.1 1.1 1 0 0 1 1 1 0 Growth factor receptor domain IV Fer4_17 PF13534.1 gi|312136861|ref|YP_004004198.1| - 0.016 15.5 12.9 0.14 12.4 2.8 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136861|ref|YP_004004198.1| - 0.5 10.9 16.1 3.8 8.1 11.1 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain UPF0547 PF10571.4 gi|312136861|ref|YP_004004198.1| - 0.69 9.6 0.2 0.69 9.6 0.2 3.0 3 1 0 3 3 2 0 Uncharacterised protein family UPF0547 NAD_binding_5 PF07994.7 gi|312136862|ref|YP_004004199.1| - 7.8e-59 199.5 0.0 2e-58 198.2 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|312136862|ref|YP_004004199.1| - 3.9e-35 120.0 0.0 6.8e-35 119.2 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Lactamase_B PF00753.22 gi|312136863|ref|YP_004004200.1| - 2.2e-12 47.0 0.0 3.3e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|312136863|ref|YP_004004200.1| - 1.5e-08 34.4 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain UbiA PF01040.13 gi|312136864|ref|YP_004004201.1| - 4.2e-41 140.8 21.7 4.7e-41 140.6 15.0 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family PIG-U PF06728.8 gi|312136864|ref|YP_004004201.1| - 0.029 13.2 16.6 0.095 11.5 2.0 2.2 2 0 0 2 2 2 0 GPI transamidase subunit PIG-U PmbA_TldD PF01523.11 gi|312136865|ref|YP_004004202.1| - 1.2e-68 231.5 0.1 1.7e-68 231.0 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SLA_LP_auto_ag PF05889.8 gi|312136866|ref|YP_004004203.1| - 2.1e-38 131.8 0.2 3.2e-38 131.2 0.1 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|312136866|ref|YP_004004203.1| - 6.5e-20 71.2 0.0 1.2e-19 70.3 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|312136866|ref|YP_004004203.1| - 3.4e-10 39.4 0.0 4e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|312136866|ref|YP_004004203.1| - 3.8e-05 22.9 0.0 5.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|312136866|ref|YP_004004203.1| - 0.00014 20.5 0.0 0.00023 19.8 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.12 gi|312136866|ref|YP_004004203.1| - 0.00064 18.8 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|312136866|ref|YP_004004203.1| - 0.038 12.2 0.0 0.049 11.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DsrD PF08679.6 gi|312136866|ref|YP_004004203.1| - 0.15 12.0 2.4 0.24 11.4 0.8 2.1 1 1 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) Ribosomal_S10 PF00338.17 gi|312136867|ref|YP_004004204.1| - 5.4e-32 109.5 0.0 6e-32 109.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|312136868|ref|YP_004004205.1| - 8.5e-63 211.2 0.0 1.2e-62 210.7 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|312136868|ref|YP_004004205.1| - 1.9e-32 111.3 0.6 5.7e-32 109.8 0.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|312136868|ref|YP_004004205.1| - 3.5e-19 68.7 2.3 3.5e-19 68.7 1.6 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|312136868|ref|YP_004004205.1| - 2e-08 34.1 0.1 5.3e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|312136868|ref|YP_004004205.1| - 7.9e-06 25.4 0.6 2.5e-05 23.8 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|312136868|ref|YP_004004205.1| - 0.00027 21.3 0.1 0.00091 19.7 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein Septin PF00735.13 gi|312136868|ref|YP_004004205.1| - 0.001 18.1 0.0 0.0017 17.3 0.0 1.3 1 0 0 1 1 1 1 Septin Gtr1_RagA PF04670.7 gi|312136868|ref|YP_004004205.1| - 0.0019 17.3 0.0 0.015 14.4 0.0 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|312136868|ref|YP_004004205.1| - 0.0021 17.3 0.7 0.037 13.2 0.1 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|312136868|ref|YP_004004205.1| - 0.0092 15.8 0.2 3.6 7.3 0.0 2.7 2 1 1 3 3 3 2 Dynamin family SRPRB PF09439.5 gi|312136868|ref|YP_004004205.1| - 0.024 13.8 0.1 0.099 11.8 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit CbiA PF01656.18 gi|312136868|ref|YP_004004205.1| - 0.052 12.9 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|312136869|ref|YP_004004206.1| - 1.2e-56 191.1 1.3 1.6e-50 171.1 0.1 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|312136869|ref|YP_004004206.1| - 2.8e-31 107.5 0.3 1.3e-30 105.3 0.1 2.3 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|312136869|ref|YP_004004206.1| - 1.5e-24 85.5 1.1 3.9e-24 84.2 0.8 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|312136869|ref|YP_004004206.1| - 8.5e-24 83.2 0.1 3.4e-23 81.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|312136869|ref|YP_004004206.1| - 7.1e-17 61.2 1.5 1.1e-15 57.4 0.4 3.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 Intein_splicing PF14890.1 gi|312136869|ref|YP_004004206.1| - 1.1e-09 37.6 19.0 3e-09 36.2 13.2 1.8 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|312136869|ref|YP_004004206.1| - 0.00018 21.6 0.7 0.00097 19.3 0.5 2.4 1 0 0 1 1 1 1 LAGLIDADG-like domain Hint PF01079.15 gi|312136869|ref|YP_004004206.1| - 0.00046 19.4 0.2 0.002 17.3 0.1 2.1 1 1 1 2 2 2 1 Hint module PT-HINT PF07591.6 gi|312136869|ref|YP_004004206.1| - 0.0042 16.9 8.8 0.036 13.9 1.2 2.8 2 0 0 2 2 2 2 Pretoxin HINT domain DUF1796 PF08795.5 gi|312136869|ref|YP_004004206.1| - 0.036 13.6 0.0 1.3 8.5 0.0 2.5 2 0 0 2 2 2 0 Putative papain-like cysteine peptidase (DUF1796) PP2C_C PF07830.8 gi|312136869|ref|YP_004004206.1| - 0.33 11.0 5.6 3.3 7.8 0.1 3.4 3 0 0 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain Ribosomal_S7 PF00177.16 gi|312136870|ref|YP_004004207.1| - 4.2e-48 162.6 6.8 4.9e-48 162.4 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|312136871|ref|YP_004004208.1| - 7.7e-43 144.7 0.7 9e-43 144.5 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|312136872|ref|YP_004004209.1| - 6.9e-20 70.3 9.1 4.9e-16 58.0 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|312136872|ref|YP_004004209.1| - 1.6e-13 50.2 4.2 7.7e-13 48.0 0.0 2.8 1 1 1 3 3 3 1 NusA-like KH domain KH_4 PF13083.1 gi|312136872|ref|YP_004004209.1| - 2.3e-08 33.5 1.9 0.00044 19.8 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|312136872|ref|YP_004004209.1| - 7.4e-07 28.7 3.2 0.0075 15.8 0.9 2.5 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|312136872|ref|YP_004004209.1| - 0.037 13.6 9.2 1.1 9.0 1.9 3.0 3 0 0 3 3 3 0 KH domain PRC PF05239.11 gi|312136872|ref|YP_004004209.1| - 0.1 12.4 0.4 1.1 9.1 0.1 2.3 2 0 0 2 2 2 0 PRC-barrel domain Cu_amine_oxidN1 PF07833.6 gi|312136872|ref|YP_004004209.1| - 0.13 12.6 0.1 3.8 7.9 0.0 2.1 1 1 1 2 2 2 0 Copper amine oxidase N-terminal domain Ribosomal_L7Ae PF01248.21 gi|312136873|ref|YP_004004210.1| - 4.1e-23 80.7 0.1 4.4e-23 80.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|312136874|ref|YP_004004211.1| - 2.8e-54 184.2 6.1 8.9e-54 182.6 4.2 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|312136874|ref|YP_004004211.1| - 0.014 14.8 0.3 0.081 12.4 0.2 2.3 1 0 0 1 1 1 0 NAC domain RNA_pol_Rpb1_1 PF04997.7 gi|312136875|ref|YP_004004212.1| - 2.2e-92 309.9 2.0 1.1e-89 301.0 0.1 3.1 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|312136875|ref|YP_004004212.1| - 7e-72 240.7 0.4 1.7e-71 239.4 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|312136875|ref|YP_004004212.1| - 2.1e-34 118.5 0.0 4.6e-34 117.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|312136875|ref|YP_004004212.1| - 7.4e-34 115.7 0.1 3.6e-33 113.5 0.0 2.3 2 1 1 3 3 3 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|312136875|ref|YP_004004212.1| - 7.9e-28 97.4 0.1 2.2e-27 96.0 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 USP7_ICP0_bdg PF12436.3 gi|312136875|ref|YP_004004212.1| - 0.051 12.7 0.0 0.089 12.0 0.0 1.3 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 LMSTEN PF07988.7 gi|312136875|ref|YP_004004212.1| - 0.7 9.2 10.3 0.055 12.7 0.5 3.1 3 0 0 3 3 3 0 LMSTEN motif RNA_pol_Rpb2_6 PF00562.23 gi|312136876|ref|YP_004004213.1| - 1.6e-134 448.4 0.0 2e-134 448.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|312136876|ref|YP_004004213.1| - 2.6e-30 104.5 0.0 4.8e-30 103.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|312136876|ref|YP_004004213.1| - 4.9e-27 93.5 0.2 1e-26 92.5 0.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|312136876|ref|YP_004004213.1| - 1.4e-16 60.1 4.4 3e-16 59.1 3.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.4 gi|312136876|ref|YP_004004213.1| - 0.0092 15.7 1.4 0.075 12.8 0.4 2.6 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb2_1 PF04563.10 gi|312136877|ref|YP_004004214.1| - 3.2e-58 196.0 0.1 3.9e-58 195.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|312136877|ref|YP_004004214.1| - 8.2e-28 97.1 0.5 1.3e-27 96.4 0.4 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|312136877|ref|YP_004004214.1| - 5.8e-27 93.2 0.0 9.8e-27 92.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|312136878|ref|YP_004004215.1| - 3.2e-32 109.9 0.6 3.6e-32 109.7 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain PASTA PF03793.14 gi|312136878|ref|YP_004004215.1| - 0.031 13.9 0.1 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 PASTA domain MRP_L53 PF10780.4 gi|312136878|ref|YP_004004215.1| - 0.16 11.9 0.2 0.26 11.3 0.1 1.4 1 1 0 1 1 1 0 39S ribosomal protein L53/MRP-L53 UPF0020 PF01170.13 gi|312136879|ref|YP_004004216.1| - 6.2e-45 152.9 0.0 9.1e-45 152.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|312136879|ref|YP_004004216.1| - 5.4e-26 91.1 0.4 1.2e-25 90.0 0.2 1.6 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|312136879|ref|YP_004004216.1| - 6.8e-17 61.5 0.0 1.2e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|312136879|ref|YP_004004216.1| - 5.1e-08 32.6 0.3 4.8e-07 29.4 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|312136879|ref|YP_004004216.1| - 3.3e-07 30.0 0.3 0.00016 21.2 0.0 2.6 2 1 0 2 2 2 2 DNA methylase Eco57I PF07669.6 gi|312136879|ref|YP_004004216.1| - 6.2e-07 29.7 0.3 1.4e-06 28.5 0.2 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|312136879|ref|YP_004004216.1| - 8.3e-06 25.2 0.0 4e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain N6_Mtase PF02384.11 gi|312136879|ref|YP_004004216.1| - 6.8e-05 22.0 0.0 0.00015 20.9 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_4 PF02390.12 gi|312136879|ref|YP_004004216.1| - 0.00055 19.0 0.5 0.0029 16.6 0.1 2.1 2 1 0 2 2 2 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|312136879|ref|YP_004004216.1| - 0.048 14.0 0.0 0.1 12.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|312136879|ref|YP_004004216.1| - 0.059 12.7 0.0 0.69 9.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF137 PF02006.11 gi|312136880|ref|YP_004004217.1| - 2.6e-74 248.4 5.7 3.2e-74 248.1 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 AAA_18 PF13238.1 gi|312136881|ref|YP_004004218.1| - 3.3e-11 43.6 0.4 5.2e-11 42.9 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312136881|ref|YP_004004218.1| - 6.3e-09 36.6 0.6 1.1e-08 35.8 0.2 1.6 1 1 1 2 2 2 1 AAA domain ADK PF00406.17 gi|312136881|ref|YP_004004218.1| - 1.1e-07 31.8 0.0 1.4e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|312136881|ref|YP_004004218.1| - 2.7e-06 27.2 0.0 3.6e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|312136881|ref|YP_004004218.1| - 0.0054 16.1 0.0 0.048 13.0 0.0 2.0 2 0 0 2 2 2 1 Dephospho-CoA kinase RNA_binding PF01877.12 gi|312136882|ref|YP_004004219.1| - 5.1e-22 78.1 1.7 5.2e-21 74.8 1.2 1.9 1 1 0 1 1 1 1 RNA binding CitX PF03802.9 gi|312136882|ref|YP_004004219.1| - 0.073 12.4 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DUF3983 PF13137.1 gi|312136882|ref|YP_004004219.1| - 0.098 12.3 0.2 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3983) ATP_bind_4 PF01902.12 gi|312136883|ref|YP_004004220.1| - 9e-88 293.2 2.6 1e-87 293.1 1.8 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|312136883|ref|YP_004004220.1| - 0.043 13.3 0.0 0.078 12.4 0.0 1.5 1 1 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|312136883|ref|YP_004004220.1| - 0.07 12.4 0.0 0.2 10.8 0.0 1.7 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC LLGL PF08366.8 gi|312136884|ref|YP_004004221.1| - 0.026 14.3 0.0 0.055 13.3 0.0 1.5 1 1 0 1 1 1 0 LLGL2 DUF4131 PF13567.1 gi|312136884|ref|YP_004004221.1| - 0.14 11.5 0.7 0.24 10.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) YfhO PF09586.5 gi|312136884|ref|YP_004004221.1| - 0.39 8.6 7.0 0.094 10.7 2.7 1.5 2 0 0 2 2 2 0 Bacterial membrane protein YfhO PepSY_TM PF03929.11 gi|312136884|ref|YP_004004221.1| - 6.3 7.4 0.0 6.3 7.4 0.0 3.9 4 0 0 4 4 4 0 PepSY-associated TM helix GNVR PF13807.1 gi|312136884|ref|YP_004004221.1| - 8.6 6.1 7.4 0.34 10.6 0.1 2.3 2 1 1 3 3 3 0 G-rich domain on putative tyrosine kinase DUF2101 PF09874.4 gi|312136889|ref|YP_004004226.1| - 2e-41 141.7 17.1 2.6e-41 141.4 11.9 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF4293 PF14126.1 gi|312136889|ref|YP_004004226.1| - 0.0034 17.3 2.6 0.0034 17.3 1.8 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4293) DUF2244 PF10003.4 gi|312136889|ref|YP_004004226.1| - 0.031 13.6 3.4 0.39 10.0 0.1 2.2 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF2767 PF10965.3 gi|312136889|ref|YP_004004226.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2767) DUF4131 PF13567.1 gi|312136889|ref|YP_004004226.1| - 3.3 7.0 7.2 12 5.2 4.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF457 PF04307.9 gi|312136889|ref|YP_004004226.1| - 3.5 6.9 8.8 5.7 6.2 6.1 1.3 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2207 PF09972.4 gi|312136889|ref|YP_004004226.1| - 8.5 4.8 19.4 0.078 11.5 3.2 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF4097 PF13349.1 gi|312136890|ref|YP_004004227.1| - 0.08 12.4 1.7 0.14 11.6 1.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) SurA_N_2 PF13623.1 gi|312136890|ref|YP_004004227.1| - 0.13 12.2 0.3 0.2 11.6 0.2 1.3 1 0 0 1 1 1 0 SurA N-terminal domain Class_IIIsignal PF04021.7 gi|312136890|ref|YP_004004227.1| - 0.36 10.5 5.2 0.97 9.2 3.6 1.8 1 0 0 1 1 1 0 Class III signal peptide HTH_3 PF01381.17 gi|312136891|ref|YP_004004228.1| - 3.1e-14 52.5 0.4 1.2e-13 50.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|312136891|ref|YP_004004228.1| - 2e-10 40.7 0.1 6.6e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|312136891|ref|YP_004004228.1| - 1.5e-09 37.7 0.2 1.5e-09 37.7 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|312136891|ref|YP_004004228.1| - 5.5e-05 23.2 0.1 0.00035 20.7 0.0 2.2 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|312136891|ref|YP_004004228.1| - 0.00054 19.5 0.1 0.0013 18.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|312136891|ref|YP_004004228.1| - 0.0024 17.4 0.1 0.0076 15.8 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_7 PF02796.10 gi|312136891|ref|YP_004004228.1| - 0.02 14.7 0.0 0.08 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Phage_CI_repr PF07022.8 gi|312136891|ref|YP_004004228.1| - 0.042 13.9 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.1 gi|312136891|ref|YP_004004228.1| - 0.067 12.8 0.1 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain NUMOD1 PF07453.8 gi|312136891|ref|YP_004004228.1| - 0.086 12.7 0.1 0.29 11.0 0.1 2.0 1 0 0 1 1 1 0 NUMOD1 domain DUF1743 PF08489.6 gi|312136892|ref|YP_004004229.1| - 7.5e-40 135.3 0.5 5.6e-39 132.5 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti_2 PF13742.1 gi|312136892|ref|YP_004004229.1| - 1.3e-06 28.2 0.0 3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|312136892|ref|YP_004004229.1| - 2.2e-06 27.3 0.0 4.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|312136892|ref|YP_004004229.1| - 0.0094 15.5 1.6 0.022 14.4 1.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|312136892|ref|YP_004004229.1| - 0.069 12.9 0.7 0.17 11.7 0.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312136892|ref|YP_004004229.1| - 0.086 12.3 5.1 0.69 9.4 3.4 2.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|312136892|ref|YP_004004229.1| - 0.1 12.1 0.3 0.18 11.3 0.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|312136892|ref|YP_004004229.1| - 1.1 8.5 7.3 4.3 6.6 3.1 2.7 2 1 1 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|312136892|ref|YP_004004229.1| - 3.9 7.0 7.5 0.78 9.2 1.2 2.8 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit MmgE_PrpD PF03972.9 gi|312136893|ref|YP_004004230.1| - 1.4e-101 339.9 0.0 1.5e-101 339.7 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Peptidase_U32 PF01136.14 gi|312136894|ref|YP_004004231.1| - 0.0004 19.3 0.0 0.00098 18.1 0.0 1.7 1 1 0 1 1 1 1 Peptidase family U32 Fumerase PF05681.9 gi|312136895|ref|YP_004004232.1| - 7.3e-62 208.8 0.2 8.1e-62 208.7 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Citrate_synt PF00285.16 gi|312136896|ref|YP_004004233.1| - 1.4e-43 149.0 0.0 8.1e-35 120.1 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase Fib_alpha PF08702.5 gi|312136897|ref|YP_004004234.1| - 0.016 15.2 12.0 0.12 12.4 8.2 2.2 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|312136897|ref|YP_004004234.1| - 0.026 13.1 15.6 0.032 12.8 10.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein SlyX PF04102.7 gi|312136897|ref|YP_004004234.1| - 0.028 14.7 3.0 2.9 8.3 0.3 2.4 1 1 1 2 2 2 0 SlyX Atg14 PF10186.4 gi|312136897|ref|YP_004004234.1| - 0.039 12.8 10.9 0.05 12.5 7.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|312136897|ref|YP_004004234.1| - 0.042 13.4 12.8 0.34 10.4 8.9 2.0 1 1 0 1 1 1 0 IncA protein DUF3552 PF12072.3 gi|312136897|ref|YP_004004234.1| - 0.062 12.5 10.2 0.083 12.0 7.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Bot1p PF12298.3 gi|312136897|ref|YP_004004234.1| - 0.072 13.0 0.2 0.072 13.0 0.1 1.7 2 0 0 2 2 2 0 Eukaryotic mitochondrial regulator protein CobN-Mg_chel PF02514.11 gi|312136897|ref|YP_004004234.1| - 0.08 10.3 0.4 3.3 4.9 0.0 2.0 2 0 0 2 2 2 0 CobN/Magnesium Chelatase Med9 PF07544.8 gi|312136897|ref|YP_004004234.1| - 0.089 12.5 12.6 0.08 12.6 6.7 2.3 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TYW3 PF02676.9 gi|312136897|ref|YP_004004234.1| - 0.12 11.5 2.2 0.16 11.0 0.2 2.0 1 1 1 2 2 2 0 Methyltransferase TYW3 AAA_13 PF13166.1 gi|312136897|ref|YP_004004234.1| - 0.26 9.6 15.0 0.29 9.5 9.6 1.3 1 1 0 1 1 1 0 AAA domain Spectrin PF00435.16 gi|312136897|ref|YP_004004234.1| - 0.36 11.1 5.5 0.41 10.9 1.0 2.4 1 1 1 2 2 2 0 Spectrin repeat Rep_fac_C PF08542.6 gi|312136897|ref|YP_004004234.1| - 0.38 10.7 4.5 0.48 10.4 1.6 2.2 1 1 1 2 2 2 0 Replication factor C C-terminal domain KLRAQ PF10205.4 gi|312136897|ref|YP_004004234.1| - 0.5 10.4 11.3 0.094 12.7 1.9 2.4 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein V_ATPase_I PF01496.14 gi|312136897|ref|YP_004004234.1| - 0.89 7.3 6.9 0.94 7.2 4.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4446 PF14584.1 gi|312136897|ref|YP_004004234.1| - 1.1 9.0 8.8 2 8.2 3.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) FliD_N PF02465.13 gi|312136897|ref|YP_004004234.1| - 1.1 9.6 4.9 2.4 8.5 1.4 2.6 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus FlxA PF14282.1 gi|312136897|ref|YP_004004234.1| - 1.2 9.1 9.6 11 6.0 0.2 2.4 1 1 1 2 2 2 0 FlxA-like protein Prefoldin_2 PF01920.15 gi|312136897|ref|YP_004004234.1| - 1.4 8.7 20.1 2.8 7.7 2.8 2.5 2 0 0 2 2 2 0 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|312136897|ref|YP_004004234.1| - 1.7 8.4 17.0 0.24 11.2 9.1 1.6 2 0 0 2 2 2 0 Tropomyosin like Exonuc_VII_L PF02601.10 gi|312136897|ref|YP_004004234.1| - 2 7.5 8.7 2.5 7.2 6.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit USP8_interact PF08941.5 gi|312136897|ref|YP_004004234.1| - 2.2 7.5 6.0 2 7.7 1.1 2.1 1 1 1 2 2 2 0 USP8 interacting Seryl_tRNA_N PF02403.17 gi|312136897|ref|YP_004004234.1| - 2.8 8.0 17.8 3.6 7.6 10.8 2.2 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.1 gi|312136897|ref|YP_004004234.1| - 3.1 8.2 5.3 3.6 8.0 1.0 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4200 PF13863.1 gi|312136897|ref|YP_004004234.1| - 3.4 7.6 19.1 11 5.9 6.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|312136897|ref|YP_004004234.1| - 3.4 7.4 17.1 26 4.5 11.9 2.1 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) NYD-SP28 PF14772.1 gi|312136897|ref|YP_004004234.1| - 3.7 7.6 12.2 1.2e+02 2.8 8.6 2.8 2 1 0 2 2 2 0 Sperm tail DUF641 PF04859.7 gi|312136897|ref|YP_004004234.1| - 6.9 6.4 16.6 10 5.8 4.6 2.6 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) DivIC PF04977.10 gi|312136897|ref|YP_004004234.1| - 7.4 6.1 15.2 4.8 6.7 4.2 2.7 1 1 1 2 2 2 0 Septum formation initiator DUF1049 PF06305.6 gi|312136897|ref|YP_004004234.1| - 8.1 6.0 5.9 9.3 5.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF2205 PF10224.4 gi|312136897|ref|YP_004004234.1| - 8.4 6.0 12.2 1.8 8.1 5.1 2.2 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) Semialdhyde_dhC PF02774.13 gi|312136898|ref|YP_004004235.1| - 2.2e-46 158.0 0.0 7.3e-46 156.3 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|312136898|ref|YP_004004235.1| - 4.2e-37 127.1 0.0 1e-36 125.9 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|312136898|ref|YP_004004235.1| - 4.2e-05 23.0 0.3 0.0015 18.0 0.0 3.0 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Saccharop_dh PF03435.13 gi|312136898|ref|YP_004004235.1| - 0.00061 18.8 0.0 0.00082 18.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|312136898|ref|YP_004004235.1| - 0.0038 17.1 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|312136898|ref|YP_004004235.1| - 0.011 16.3 0.0 0.029 14.9 0.0 1.9 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.1 gi|312136898|ref|YP_004004235.1| - 0.015 15.2 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|312136898|ref|YP_004004235.1| - 0.046 13.3 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|312136898|ref|YP_004004235.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_C PF05173.9 gi|312136899|ref|YP_004004236.1| - 9.5e-46 154.8 0.3 1.4e-45 154.2 0.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|312136899|ref|YP_004004236.1| - 3.4e-38 130.3 2.8 3.4e-38 130.3 1.9 2.0 3 0 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|312136899|ref|YP_004004236.1| - 0.019 15.4 0.2 0.087 13.3 0.0 2.0 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|312136899|ref|YP_004004236.1| - 0.075 12.9 1.0 3 7.7 0.0 2.4 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|312136899|ref|YP_004004236.1| - 0.092 13.1 0.1 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|312136899|ref|YP_004004236.1| - 0.1 12.9 1.1 0.2 11.9 0.1 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|312136899|ref|YP_004004236.1| - 0.11 12.1 0.0 7.6 6.1 0.0 2.4 2 0 0 2 2 2 0 KR domain DHDPS PF00701.17 gi|312136900|ref|YP_004004237.1| - 8.1e-98 326.5 0.5 9.1e-98 326.4 0.3 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AA_kinase PF00696.23 gi|312136901|ref|YP_004004238.1| - 3.4e-52 177.4 3.4 2.9e-51 174.3 1.8 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|312136901|ref|YP_004004238.1| - 2e-24 84.8 0.3 1.3e-11 43.8 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|312136901|ref|YP_004004238.1| - 1.3e-12 46.9 0.1 7.9e-06 25.2 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|312136901|ref|YP_004004238.1| - 2e-05 24.8 0.4 0.062 13.6 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|312136901|ref|YP_004004238.1| - 0.00025 20.7 0.7 1.2 8.8 0.0 3.2 3 0 0 3 3 3 2 ACT domain DUF3186 PF11382.3 gi|312136901|ref|YP_004004238.1| - 0.018 14.1 0.2 0.039 13.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) DUF2007 PF09413.5 gi|312136901|ref|YP_004004238.1| - 0.027 14.2 0.0 0.15 11.8 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF2007) CMD PF02627.15 gi|312136901|ref|YP_004004238.1| - 0.038 13.8 0.1 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Ribosomal_S17e PF00833.13 gi|312136902|ref|YP_004004239.1| - 9.9e-23 80.2 0.3 1e-22 80.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 Imm16 PF15565.1 gi|312136902|ref|YP_004004239.1| - 0.037 13.8 0.0 0.037 13.8 0.0 1.0 1 0 0 1 1 1 0 Immunity protein 16 CM_2 PF01817.16 gi|312136903|ref|YP_004004240.1| - 1.3e-13 50.8 7.7 1.5e-13 50.6 5.3 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DED PF01335.16 gi|312136903|ref|YP_004004240.1| - 0.07 13.2 1.1 1.1 9.3 0.1 2.1 1 1 0 2 2 2 0 Death effector domain PIN_2 PF10130.4 gi|312136903|ref|YP_004004240.1| - 0.18 11.8 4.2 0.59 10.1 0.6 2.1 1 1 1 2 2 2 0 PIN domain ASL_C PF08328.6 gi|312136903|ref|YP_004004240.1| - 0.3 10.9 4.3 0.36 10.6 3.0 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal KIP1 PF07765.7 gi|312136903|ref|YP_004004240.1| - 0.54 10.1 3.1 13 5.7 0.2 2.1 1 1 1 2 2 2 0 KIP1-like protein DUF1940 PF09155.5 gi|312136903|ref|YP_004004240.1| - 1.2 9.0 5.5 4.4 7.1 3.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1940) GHMP_kinases_N PF00288.21 gi|312136904|ref|YP_004004241.1| - 3.7e-12 46.1 2.2 3.9e-12 46.0 0.3 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|312136904|ref|YP_004004241.1| - 4.8e-07 29.8 0.0 2.5e-06 27.6 0.0 2.2 2 1 0 2 2 2 1 GHMP kinases C terminal Thioredoxin_3 PF13192.1 gi|312136905|ref|YP_004004242.1| - 4.3e-19 68.1 0.7 5.1e-19 67.8 0.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|312136905|ref|YP_004004242.1| - 7.8e-12 45.0 0.0 1.3e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|312136905|ref|YP_004004242.1| - 4e-11 43.1 0.2 2.3e-05 24.4 0.1 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.15 gi|312136905|ref|YP_004004242.1| - 6.3e-09 35.4 0.1 6.6e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|312136905|ref|YP_004004242.1| - 3e-06 26.9 0.0 0.0012 18.4 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|312136905|ref|YP_004004242.1| - 3.8e-06 27.0 0.0 4.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|312136905|ref|YP_004004242.1| - 0.0011 19.0 0.2 0.0094 16.1 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DUF1223 PF06764.6 gi|312136905|ref|YP_004004242.1| - 0.0018 18.1 0.2 0.0092 15.8 0.1 1.9 1 1 0 2 2 2 1 Protein of unknown function (DUF1223) KaiB PF07689.7 gi|312136905|ref|YP_004004242.1| - 0.002 17.5 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 KaiB domain CbiD PF01888.12 gi|312136906|ref|YP_004004243.1| - 2.7e-97 324.8 9.8 4e-97 324.2 6.8 1.3 1 0 0 1 1 1 1 CbiD TMP_2 PF06791.8 gi|312136906|ref|YP_004004243.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Prophage tail length tape measure protein Ketoacyl-synt_C PF02801.17 gi|312136906|ref|YP_004004243.1| - 0.094 12.5 0.8 0.34 10.7 0.1 2.2 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain DUF2336 PF10098.4 gi|312136906|ref|YP_004004243.1| - 0.11 11.7 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2336) Glycos_transf_1 PF00534.15 gi|312136907|ref|YP_004004244.1| - 1.4e-45 154.8 1.3 1.4e-45 154.8 0.9 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312136907|ref|YP_004004244.1| - 2.7e-20 72.8 0.0 6.2e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312136907|ref|YP_004004244.1| - 1.1e-17 64.2 0.0 2.3e-17 63.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|312136907|ref|YP_004004244.1| - 3.6e-16 59.2 2.6 4e-16 59.1 0.7 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|312136907|ref|YP_004004244.1| - 1.6e-12 47.8 0.0 3.4e-12 46.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|312136907|ref|YP_004004244.1| - 4.1e-11 42.9 0.0 1.4e-10 41.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|312136907|ref|YP_004004244.1| - 0.00047 19.7 0.0 0.0019 17.7 0.0 2.0 2 0 0 2 2 2 1 Starch synthase catalytic domain DUF3492 PF11997.3 gi|312136907|ref|YP_004004244.1| - 0.00095 18.7 2.5 0.018 14.5 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF3492) Glyco_transf_20 PF00982.16 gi|312136907|ref|YP_004004244.1| - 0.012 14.1 0.0 0.021 13.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 20 MAF_flag10 PF01973.13 gi|312136907|ref|YP_004004244.1| - 0.031 13.7 0.7 0.5 9.8 0.0 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF115 Glyco_tran_28_C PF04101.11 gi|312136907|ref|YP_004004244.1| - 0.057 13.0 1.4 1.9 8.1 0.0 2.8 2 1 0 2 2 2 0 Glycosyltransferase family 28 C-terminal domain PTS_IIB PF02302.12 gi|312136907|ref|YP_004004244.1| - 1.4 9.4 4.4 1.2 9.6 0.2 2.8 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit MoaC PF01967.16 gi|312136908|ref|YP_004004245.1| - 6e-51 171.6 5.2 6.9e-51 171.4 3.6 1.0 1 0 0 1 1 1 1 MoaC family Ribosomal_S9 PF00380.14 gi|312136908|ref|YP_004004245.1| - 0.15 12.3 1.0 0.2 11.8 0.7 1.3 1 1 0 1 1 1 0 Ribosomal protein S9/S16 DEAD PF00270.24 gi|312136909|ref|YP_004004246.1| - 2.9e-18 65.9 0.2 1.6e-17 63.4 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|312136909|ref|YP_004004246.1| - 4.6e-11 42.8 0.1 5.6e-07 29.5 0.0 3.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|312136909|ref|YP_004004246.1| - 1.4e-08 34.7 0.4 2.7e-07 30.6 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|312136909|ref|YP_004004246.1| - 1.5e-08 34.3 0.0 3.4e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH PF00633.18 gi|312136909|ref|YP_004004246.1| - 1.3e-05 24.5 4.3 6.6e-05 22.3 0.1 3.2 4 0 0 4 4 4 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|312136909|ref|YP_004004246.1| - 4.7e-05 23.1 0.1 0.00028 20.7 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|312136909|ref|YP_004004246.1| - 0.0023 17.8 0.4 0.02 14.8 0.0 2.7 2 1 1 3 3 3 1 Helix-hairpin-helix motif PhoH PF02562.11 gi|312136909|ref|YP_004004246.1| - 0.012 14.8 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein HHH_8 PF14716.1 gi|312136909|ref|YP_004004246.1| - 0.022 14.9 0.1 0.088 12.9 0.1 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain p25-alpha PF05517.7 gi|312136909|ref|YP_004004246.1| - 0.046 13.9 0.3 0.14 12.4 0.2 1.7 1 0 0 1 1 1 0 p25-alpha IstB_IS21 PF01695.12 gi|312136909|ref|YP_004004246.1| - 0.063 12.6 0.1 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2115 PF09888.4 gi|312136910|ref|YP_004004247.1| - 3.7e-45 153.9 5.8 4.2e-45 153.7 4.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) zf-C4H2 PF10146.4 gi|312136910|ref|YP_004004247.1| - 0.0037 17.3 2.9 0.0055 16.7 2.0 1.3 1 0 0 1 1 1 1 Zinc finger-containing protein Peptidase_C65 PF10275.4 gi|312136910|ref|YP_004004247.1| - 0.0054 16.1 1.0 0.0065 15.8 0.7 1.1 1 0 0 1 1 1 1 Peptidase C65 Otubain Birna_RdRp PF04197.7 gi|312136910|ref|YP_004004247.1| - 0.015 13.3 1.2 0.018 13.1 0.8 1.0 1 0 0 1 1 1 0 Birnavirus RNA dependent RNA polymerase (VP1) DUF2098 PF09871.4 gi|312136911|ref|YP_004004248.1| - 1.4e-27 95.4 5.6 1.6e-27 95.2 3.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) MitMem_reg PF13012.1 gi|312136911|ref|YP_004004248.1| - 0.0041 17.1 0.1 0.005 16.9 0.1 1.1 1 0 0 1 1 1 1 Maintenance of mitochondrial structure and function YlaC PF10777.4 gi|312136911|ref|YP_004004248.1| - 0.0066 16.0 0.9 0.0084 15.6 0.6 1.1 1 0 0 1 1 1 1 Inner membrane protein YlaC YdfZ PF14001.1 gi|312136911|ref|YP_004004248.1| - 0.076 13.2 0.2 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 YdfZ protein YopX PF09643.5 gi|312136911|ref|YP_004004248.1| - 0.11 12.4 1.9 0.12 12.3 0.7 1.5 1 1 1 2 2 2 0 YopX protein SHOCT PF09851.4 gi|312136911|ref|YP_004004248.1| - 0.25 10.8 3.8 2.2 7.8 0.2 2.2 2 0 0 2 2 2 0 Short C-terminal domain GTP_EFTU_D2 PF03144.20 gi|312136911|ref|YP_004004248.1| - 0.39 10.8 2.6 13 6.0 0.1 2.1 2 0 0 2 2 2 0 Elongation factor Tu domain 2 PRC PF05239.11 gi|312136912|ref|YP_004004249.1| - 1e-13 50.9 1.9 1.3e-13 50.6 1.2 1.2 1 1 0 1 1 1 1 PRC-barrel domain TOBE_3 PF12857.2 gi|312136912|ref|YP_004004249.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 2 0 TOBE-like domain Radical_SAM PF04055.16 gi|312136913|ref|YP_004004250.1| - 1.4e-22 80.6 1.7 4.5e-22 78.9 0.2 2.6 3 1 0 3 3 3 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|312136913|ref|YP_004004250.1| - 1.8e-07 31.0 0.5 8.8e-07 28.8 0.1 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|312136913|ref|YP_004004250.1| - 0.033 14.3 0.5 0.51 10.5 0.2 2.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF2192 PF09958.4 gi|312136913|ref|YP_004004250.1| - 0.037 13.2 2.5 0.067 12.4 0.6 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2192) Radical_SAM PF04055.16 gi|312136914|ref|YP_004004251.1| - 1.4e-22 80.6 0.3 2.1e-22 80.0 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily T2SF PF00482.18 gi|312136915|ref|YP_004004252.1| - 6.3e-18 64.8 3.2 6.3e-18 64.8 2.2 2.4 2 1 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF3169 PF11368.3 gi|312136915|ref|YP_004004252.1| - 0.9 8.6 10.1 0.048 12.8 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) Halogen_Hydrol PF10112.4 gi|312136915|ref|YP_004004252.1| - 4.2 6.7 6.2 4 6.7 0.1 2.5 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4191 PF13829.1 gi|312136915|ref|YP_004004252.1| - 4.6 6.2 7.9 5.4 6.0 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF2207 PF09972.4 gi|312136915|ref|YP_004004252.1| - 4.7 5.6 9.5 3 6.3 0.8 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Class_IIIsignal PF04021.7 gi|312136916|ref|YP_004004253.1| - 4.8e-05 22.9 7.9 0.00019 21.0 5.5 1.9 1 1 0 1 1 1 1 Class III signal peptide ABC2_membrane_4 PF12730.2 gi|312136916|ref|YP_004004253.1| - 0.025 13.7 0.2 0.026 13.6 0.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4013 PF13197.1 gi|312136916|ref|YP_004004253.1| - 0.029 13.6 0.1 0.029 13.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Baculo_11_kDa PF06143.6 gi|312136916|ref|YP_004004253.1| - 0.11 11.8 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Baculovirus 11 kDa family Aldedh PF00171.17 gi|312136917|ref|YP_004004254.1| - 1.1e-159 531.6 1.0 1.3e-159 531.4 0.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|312136917|ref|YP_004004254.1| - 2.5e-07 29.7 0.0 8.4e-07 28.0 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) TBPIP PF07106.8 gi|312136917|ref|YP_004004254.1| - 0.026 14.0 4.0 0.061 12.8 2.8 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1487 PF07368.6 gi|312136917|ref|YP_004004254.1| - 0.029 13.5 0.2 0.11 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Methyltransf_27 PF13708.1 gi|312136917|ref|YP_004004254.1| - 0.079 12.4 0.1 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Molybdopterin PF00384.17 gi|312136918|ref|YP_004004255.1| - 7.5e-108 361.0 0.6 9.1e-108 360.7 0.4 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|312136918|ref|YP_004004255.1| - 1.1e-33 115.3 0.0 2.1e-33 114.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|312136918|ref|YP_004004255.1| - 6e-21 74.0 1.6 6e-21 74.0 1.1 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.17 gi|312136918|ref|YP_004004255.1| - 0.026 14.1 0.1 0.058 13.0 0.1 1.5 1 0 0 1 1 1 0 SIS domain FrhB_FdhB_C PF04432.8 gi|312136919|ref|YP_004004256.1| - 4.5e-36 123.6 0.2 4.5e-36 123.6 0.1 1.8 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|312136919|ref|YP_004004256.1| - 1.7e-23 82.2 0.0 3.5e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|312136919|ref|YP_004004256.1| - 9.8e-10 38.3 14.7 1.1e-08 34.9 9.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136919|ref|YP_004004256.1| - 5.6e-06 25.9 16.9 0.00048 19.8 1.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312136919|ref|YP_004004256.1| - 1.8e-05 25.0 11.4 0.00056 20.2 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136919|ref|YP_004004256.1| - 0.0001 22.5 16.3 0.0001 22.5 11.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136919|ref|YP_004004256.1| - 0.00015 21.4 22.3 0.00027 20.6 0.9 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312136919|ref|YP_004004256.1| - 0.00043 20.3 2.7 0.00043 20.3 1.8 3.7 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4 PF00037.22 gi|312136919|ref|YP_004004256.1| - 0.0006 19.3 5.2 0.0006 19.3 3.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312136919|ref|YP_004004256.1| - 0.0033 17.2 4.4 0.0033 17.2 3.1 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136919|ref|YP_004004256.1| - 0.018 15.3 22.3 0.067 13.5 13.0 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136919|ref|YP_004004256.1| - 0.022 15.0 27.5 0.07 13.4 12.7 3.8 2 2 2 4 4 4 0 4Fe-4S dicluster domain MCR_beta PF02241.13 gi|312136919|ref|YP_004004256.1| - 0.05 12.8 0.1 0.44 9.7 0.0 2.1 2 0 0 2 2 2 0 Methyl-coenzyme M reductase beta subunit, C-terminal domain Fer4_21 PF14697.1 gi|312136919|ref|YP_004004256.1| - 0.058 13.2 13.0 0.13 12.1 0.5 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.8 gi|312136920|ref|YP_004004257.1| - 2.2e-41 140.9 0.3 2.2e-41 140.9 0.2 2.3 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.17 gi|312136920|ref|YP_004004257.1| - 8.1e-34 116.2 0.9 6.7e-33 113.2 0.3 2.3 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.22 gi|312136920|ref|YP_004004257.1| - 1.2e-19 68.9 40.9 1.4e-07 30.7 3.2 5.8 5 0 0 5 5 5 3 4Fe-4S binding domain FrhB_FdhB_N PF04422.8 gi|312136920|ref|YP_004004257.1| - 1.5e-18 66.4 0.0 5e-18 64.7 0.0 1.9 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|312136920|ref|YP_004004257.1| - 3.4e-13 49.1 31.2 5.1e-07 29.3 9.6 4.7 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136920|ref|YP_004004257.1| - 3.6e-13 49.5 28.8 0.00018 21.6 0.1 4.8 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136920|ref|YP_004004257.1| - 1.2e-12 47.0 41.8 3.6e-06 26.6 1.7 5.7 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136920|ref|YP_004004257.1| - 1.7e-12 47.5 29.5 0.00037 20.8 3.1 5.3 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136920|ref|YP_004004257.1| - 4.8e-11 41.9 43.0 9.6e-05 22.0 1.6 5.7 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136920|ref|YP_004004257.1| - 1.8e-09 37.3 31.9 3.7e-06 26.6 8.0 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136920|ref|YP_004004257.1| - 1.9e-09 37.3 21.8 0.0016 18.3 8.9 5.1 4 1 2 6 6 6 4 4Fe-4S dicluster domain NIR_SIR_ferr PF03460.12 gi|312136920|ref|YP_004004257.1| - 1.3e-08 34.3 0.0 3.2e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_4 PF12800.2 gi|312136920|ref|YP_004004257.1| - 1.1e-07 31.6 43.0 0.00023 21.2 1.3 6.0 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|312136920|ref|YP_004004257.1| - 1.9e-07 31.7 30.3 0.0047 17.6 1.1 6.0 5 1 1 6 6 5 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|312136920|ref|YP_004004257.1| - 7.2e-06 26.2 28.6 0.016 15.5 0.2 5.6 4 1 1 5 5 5 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136920|ref|YP_004004257.1| - 1.7e-05 25.1 31.8 0.0099 16.2 1.1 5.4 6 0 0 6 6 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136920|ref|YP_004004257.1| - 0.00037 21.0 32.2 0.083 13.4 0.8 5.9 4 2 2 6 6 6 3 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|312136920|ref|YP_004004257.1| - 0.036 13.9 11.8 0.78 9.6 2.8 2.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312136920|ref|YP_004004257.1| - 0.037 14.4 29.9 0.36 11.2 0.1 5.9 6 0 0 6 6 6 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|312136920|ref|YP_004004257.1| - 5.3 7.8 58.8 0.053 14.1 3.4 5.9 7 0 0 7 7 4 0 4Fe-4S binding domain Amidohydro_1 PF01979.15 gi|312136921|ref|YP_004004258.1| - 3e-22 79.7 0.3 1.7e-21 77.2 0.2 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|312136921|ref|YP_004004258.1| - 1.1e-18 68.2 0.0 1.1e-09 38.6 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|312136921|ref|YP_004004258.1| - 2.3e-15 56.1 0.1 4.7e-15 55.1 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|312136921|ref|YP_004004258.1| - 8.6e-07 28.5 0.0 0.0027 16.9 0.0 3.0 2 1 1 3 3 3 2 Amidohydrolase family DHOase PF12890.2 gi|312136921|ref|YP_004004258.1| - 0.0075 15.9 0.0 0.017 14.8 0.0 1.8 1 1 0 1 1 1 1 Dihydro-orotase-like EF-hand_5 PF13202.1 gi|312136921|ref|YP_004004258.1| - 0.015 14.5 0.0 0.057 12.7 0.0 2.0 1 0 0 1 1 1 0 EF hand TatD_DNase PF01026.16 gi|312136921|ref|YP_004004258.1| - 0.039 13.1 0.0 0.08 12.1 0.0 1.6 1 1 1 2 2 2 0 TatD related DNase EF-hand_1 PF00036.27 gi|312136921|ref|YP_004004258.1| - 0.43 9.9 2.1 1.6 8.2 0.1 2.8 3 0 0 3 3 3 0 EF hand FAA_hydrolase PF01557.13 gi|312136922|ref|YP_004004259.1| - 1.3e-67 227.4 0.0 1.7e-67 227.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|312136922|ref|YP_004004259.1| - 0.0014 18.9 0.0 0.0026 18.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) Methyltransf_31 PF13847.1 gi|312136923|ref|YP_004004260.1| - 4.2e-24 84.8 0.5 5.7e-24 84.4 0.4 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312136923|ref|YP_004004260.1| - 3e-20 72.5 0.0 4.3e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312136923|ref|YP_004004260.1| - 3.8e-14 53.2 0.0 5.2e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|312136923|ref|YP_004004260.1| - 4.2e-14 52.8 0.0 8.6e-14 51.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|312136923|ref|YP_004004260.1| - 6.4e-14 51.6 0.1 7.8e-14 51.4 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|312136923|ref|YP_004004260.1| - 8.1e-14 51.8 0.0 1.2e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|312136923|ref|YP_004004260.1| - 1e-13 50.9 0.1 1.2e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|312136923|ref|YP_004004260.1| - 6.1e-09 35.4 0.7 8.9e-09 34.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|312136923|ref|YP_004004260.1| - 8.9e-08 32.0 0.0 1.5e-07 31.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|312136923|ref|YP_004004260.1| - 9.5e-08 31.9 0.3 4e-07 29.9 0.2 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|312136923|ref|YP_004004260.1| - 1.6e-07 31.3 0.0 2.5e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|312136923|ref|YP_004004260.1| - 4e-07 29.4 0.0 6.1e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase TehB PF03848.9 gi|312136923|ref|YP_004004260.1| - 4.8e-06 25.8 0.1 6e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB GCD14 PF08704.5 gi|312136923|ref|YP_004004260.1| - 6.7e-06 25.7 0.0 0.00046 19.7 0.0 2.1 1 1 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.1 gi|312136923|ref|YP_004004260.1| - 7.1e-06 25.7 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|312136923|ref|YP_004004260.1| - 2.5e-05 23.4 0.2 0.00037 19.5 0.1 2.1 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.15 gi|312136923|ref|YP_004004260.1| - 0.00014 21.0 0.1 0.00082 18.5 0.1 1.9 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|312136923|ref|YP_004004260.1| - 0.00016 21.3 0.4 0.00023 20.8 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein DUF938 PF06080.7 gi|312136923|ref|YP_004004260.1| - 0.00022 20.8 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_5 PF01795.14 gi|312136923|ref|YP_004004260.1| - 0.00022 20.5 0.0 0.0072 15.6 0.0 2.1 1 1 1 2 2 2 1 MraW methylase family DREV PF05219.7 gi|312136923|ref|YP_004004260.1| - 0.00033 19.6 0.1 0.00045 19.1 0.1 1.3 1 1 0 1 1 1 1 DREV methyltransferase FmrO PF07091.6 gi|312136923|ref|YP_004004260.1| - 0.00076 18.5 0.0 0.00095 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.14 gi|312136923|ref|YP_004004260.1| - 0.00094 18.7 0.2 0.0037 16.8 0.0 1.8 1 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|312136923|ref|YP_004004260.1| - 0.0011 18.3 0.0 0.0013 18.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) FtsJ PF01728.14 gi|312136923|ref|YP_004004260.1| - 0.0012 18.8 0.0 0.0023 17.9 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_PK PF05891.7 gi|312136923|ref|YP_004004260.1| - 0.0017 17.6 0.1 0.0024 17.2 0.1 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase RrnaAD PF00398.15 gi|312136923|ref|YP_004004260.1| - 0.0067 15.4 0.1 0.0088 15.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|312136923|ref|YP_004004260.1| - 0.0086 15.2 0.4 0.013 14.6 0.3 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_3 PF01596.12 gi|312136923|ref|YP_004004260.1| - 0.012 14.6 0.1 0.025 13.6 0.1 1.7 1 1 0 1 1 1 0 O-methyltransferase Fibrillarin PF01269.12 gi|312136923|ref|YP_004004260.1| - 0.014 14.3 0.2 0.017 14.0 0.2 1.1 1 0 0 1 1 1 0 Fibrillarin Methyltransf_29 PF03141.11 gi|312136923|ref|YP_004004260.1| - 0.015 13.7 0.0 0.018 13.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.13 gi|312136923|ref|YP_004004260.1| - 0.038 13.5 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF458 PF04308.7 gi|312136923|ref|YP_004004260.1| - 0.042 13.5 0.9 0.11 12.1 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF458) Nol1_Nop2_Fmu PF01189.12 gi|312136923|ref|YP_004004260.1| - 0.054 12.8 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family CheR PF01739.13 gi|312136923|ref|YP_004004260.1| - 0.07 12.3 0.2 0.4 9.9 0.1 1.9 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_30 PF05430.6 gi|312136923|ref|YP_004004260.1| - 0.12 12.0 0.1 1.9 8.1 0.0 2.7 2 1 0 2 2 2 0 S-adenosyl-L-methionine-dependent methyltransferase SeleniumBinding PF11524.3 gi|312136923|ref|YP_004004260.1| - 0.23 11.6 1.5 2.4 8.3 0.1 2.4 1 1 1 2 2 2 0 Selenium binding protein TP_methylase PF00590.15 gi|312136924|ref|YP_004004261.1| - 5.2e-21 75.3 0.0 6.1e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3227 PF11537.3 gi|312136924|ref|YP_004004261.1| - 0.085 12.9 0.5 0.2 11.7 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) PHP PF02811.14 gi|312136925|ref|YP_004004262.1| - 0.11 12.2 0.5 0.22 11.2 0.3 1.7 1 1 0 1 1 1 0 PHP domain Fumerase_C PF05683.7 gi|312136926|ref|YP_004004263.1| - 2e-55 187.1 0.1 2.5e-55 186.8 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus SpoA PF01052.15 gi|312136926|ref|YP_004004263.1| - 0.05 13.2 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 Surface presentation of antigens (SPOA) DUF3021 PF11457.3 gi|312136927|ref|YP_004004264.1| - 0.0094 15.8 3.0 0.013 15.4 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3021) Rhomboid PF01694.17 gi|312136927|ref|YP_004004264.1| - 0.017 15.1 2.5 0.021 14.8 1.8 1.1 1 0 0 1 1 1 0 Rhomboid family MFS_2 PF13347.1 gi|312136927|ref|YP_004004264.1| - 0.021 13.2 3.2 0.017 13.5 1.0 1.4 1 1 0 1 1 1 0 MFS/sugar transport protein O-ag_pol_Wzy PF14296.1 gi|312136927|ref|YP_004004264.1| - 0.072 11.6 0.7 0.083 11.4 0.1 1.4 1 1 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy DUF3938 PF13074.1 gi|312136927|ref|YP_004004264.1| - 0.11 12.3 0.2 0.11 12.3 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3938) PIG-P PF08510.7 gi|312136927|ref|YP_004004264.1| - 0.22 11.1 0.8 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 PIG-P Colicin_V PF02674.11 gi|312136927|ref|YP_004004264.1| - 0.35 10.7 6.2 2 8.2 4.4 1.8 1 1 0 1 1 1 0 Colicin V production protein DUF3262 PF11660.3 gi|312136927|ref|YP_004004264.1| - 0.79 9.8 5.5 1.5 8.9 3.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) FtsX PF02687.16 gi|312136927|ref|YP_004004264.1| - 2.9 7.6 8.0 1.1 8.9 0.9 2.0 1 1 1 2 2 2 0 FtsX-like permease family Sdh_cyt PF01127.17 gi|312136927|ref|YP_004004264.1| - 8 6.3 8.4 38 4.1 5.8 1.9 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SdpI PF13630.1 gi|312136927|ref|YP_004004264.1| - 10 5.9 9.1 6.6 6.5 2.6 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family TGT PF01702.13 gi|312136928|ref|YP_004004265.1| - 2.7e-16 59.6 0.0 6.1e-13 48.6 0.0 2.1 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase ComA PF02679.10 gi|312136928|ref|YP_004004265.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) Ten_N PF06484.7 gi|312136928|ref|YP_004004265.1| - 0.2 10.7 0.0 0.26 10.3 0.0 1.1 1 0 0 1 1 1 0 Teneurin Intracellular Region Amidohydro_1 PF01979.15 gi|312136929|ref|YP_004004266.1| - 7.1e-71 239.5 1.1 8.5e-71 239.3 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|312136929|ref|YP_004004266.1| - 4e-14 52.1 0.1 4e-14 52.1 0.1 3.0 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|312136929|ref|YP_004004266.1| - 6.3e-11 42.8 0.0 1e-06 29.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|312136929|ref|YP_004004266.1| - 6.4e-11 42.0 0.0 2.5e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|312136929|ref|YP_004004266.1| - 4.3e-05 22.5 0.4 0.00025 20.0 0.2 2.0 1 1 0 1 1 1 1 Adenosine/AMP deaminase Lgl_C PF08596.5 gi|312136929|ref|YP_004004266.1| - 0.018 13.5 0.0 0.035 12.5 0.0 1.4 1 0 0 1 1 1 0 Lethal giant larvae(Lgl) like, C-terminal Urease_alpha PF00449.15 gi|312136929|ref|YP_004004266.1| - 0.055 13.6 2.6 0.14 12.3 1.8 1.7 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain HTH_11 PF08279.7 gi|312136930|ref|YP_004004267.1| - 3.6e-08 32.9 1.2 2.9e-07 30.0 0.1 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|312136930|ref|YP_004004267.1| - 3.7e-08 32.8 0.1 6.5e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|312136930|ref|YP_004004267.1| - 3.5e-07 29.8 0.1 8.1e-07 28.6 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|312136930|ref|YP_004004267.1| - 1e-06 27.9 0.5 1e-06 27.9 0.4 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|312136930|ref|YP_004004267.1| - 5.7e-06 26.2 0.0 1.8e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|312136930|ref|YP_004004267.1| - 0.00026 20.5 0.0 0.0005 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|312136930|ref|YP_004004267.1| - 0.00031 20.4 0.0 0.00055 19.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|312136930|ref|YP_004004267.1| - 0.00041 19.9 0.2 0.00069 19.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|312136930|ref|YP_004004267.1| - 0.00049 19.6 0.2 0.0011 18.4 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|312136930|ref|YP_004004267.1| - 0.0039 16.8 0.0 0.0058 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|312136930|ref|YP_004004267.1| - 0.0092 15.5 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.9 gi|312136930|ref|YP_004004267.1| - 0.013 15.1 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GerE PF00196.14 gi|312136930|ref|YP_004004267.1| - 0.014 14.6 0.5 0.014 14.6 0.4 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|312136930|ref|YP_004004267.1| - 0.019 15.1 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Mga PF05043.8 gi|312136930|ref|YP_004004267.1| - 0.021 15.1 0.1 0.049 13.9 0.1 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain PK_C PF02887.11 gi|312136930|ref|YP_004004267.1| - 0.022 14.3 0.2 0.064 12.8 0.0 1.7 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain HTH_17 PF12728.2 gi|312136930|ref|YP_004004267.1| - 0.027 14.6 0.0 0.072 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|312136930|ref|YP_004004267.1| - 0.032 14.2 1.0 0.12 12.4 0.1 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|312136930|ref|YP_004004267.1| - 0.041 13.4 0.1 0.1 12.1 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|312136930|ref|YP_004004267.1| - 0.047 13.8 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|312136930|ref|YP_004004267.1| - 0.054 13.3 0.2 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_22 PF13309.1 gi|312136930|ref|YP_004004267.1| - 0.067 12.9 0.0 0.22 11.2 0.0 1.9 1 0 0 1 1 1 0 HTH domain Sulfolobus_pRN PF05584.6 gi|312136930|ref|YP_004004267.1| - 0.071 13.0 0.4 0.21 11.5 0.3 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein ArsR PF09824.4 gi|312136930|ref|YP_004004267.1| - 0.078 12.2 2.7 0.12 11.6 0.1 2.1 2 0 0 2 2 2 0 ArsR transcriptional regulator FeoC PF09012.5 gi|312136930|ref|YP_004004267.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator NUMOD1 PF07453.8 gi|312136930|ref|YP_004004267.1| - 0.26 11.1 1.8 4.1 7.3 0.0 3.3 3 0 0 3 3 3 0 NUMOD1 domain HTH_45 PF14947.1 gi|312136930|ref|YP_004004267.1| - 0.58 10.0 4.5 0.16 11.7 0.7 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix Glyco_hydro_4C PF11975.3 gi|312136930|ref|YP_004004267.1| - 2.7 7.7 7.2 2.8 7.6 4.3 1.5 1 1 1 2 2 2 0 Family 4 glycosyl hydrolase C-terminal domain DUF377 PF04041.8 gi|312136931|ref|YP_004004268.1| - 8.9e-37 126.4 0.8 2.5e-27 95.4 0.0 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF377) DUF377 PF04041.8 gi|312136932|ref|YP_004004269.1| - 1.5e-109 365.5 3.9 7.6e-63 212.1 0.3 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF377) Glyco_hydro_32N PF00251.15 gi|312136932|ref|YP_004004269.1| - 0.00085 18.7 0.0 2 7.7 0.0 3.0 2 1 0 3 3 3 2 Glycosyl hydrolases family 32 N-terminal domain DUF1861 PF08950.5 gi|312136932|ref|YP_004004269.1| - 0.011 14.6 0.0 0.22 10.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1861) DUF2070 PF09843.4 gi|312136933|ref|YP_004004270.1| - 4.7e-49 166.2 0.2 7.9e-49 165.5 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) FbpA PF05833.6 gi|312136934|ref|YP_004004271.1| - 1.7e-96 323.5 24.7 2.3e-96 323.1 17.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|312136934|ref|YP_004004271.1| - 2.2e-32 110.7 0.3 9.6e-32 108.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|312136934|ref|YP_004004271.1| - 2.8e-06 27.0 0.0 1.9e-05 24.3 0.0 2.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain DUF3441 PF11923.3 gi|312136934|ref|YP_004004271.1| - 9.4e-05 21.9 0.1 9.4e-05 21.9 0.1 2.8 3 1 0 3 3 3 1 Domain of unknown function (DUF3441) ROS_MUCR PF05443.6 gi|312136934|ref|YP_004004271.1| - 0.0031 17.2 0.7 0.014 15.2 0.2 2.3 2 1 0 2 2 2 1 ROS/MUCR transcriptional regulator protein Ribosomal_S13 PF00416.17 gi|312136934|ref|YP_004004271.1| - 0.069 13.5 13.8 5.8 7.4 9.6 3.2 1 1 0 1 1 1 0 Ribosomal protein S13/S18 Membralin PF09746.4 gi|312136934|ref|YP_004004271.1| - 1.9 7.4 5.9 3.8 6.4 4.1 1.5 1 0 0 1 1 1 0 Tumour-associated protein Radical_SAM PF04055.16 gi|312136934|ref|YP_004004271.1| - 4.8 7.3 6.8 3 8.0 1.8 2.7 2 1 1 3 3 3 0 Radical SAM superfamily DUF2072 PF09845.4 gi|312136935|ref|YP_004004272.1| - 2.3e-19 69.6 5.5 3.7e-14 52.7 0.5 2.0 1 1 1 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF2073 PF09846.4 gi|312136936|ref|YP_004004273.1| - 1.9e-33 114.2 2.5 2.3e-33 113.9 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF1355 PF07090.6 gi|312136936|ref|YP_004004273.1| - 0.077 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) MMR_HSR1 PF01926.18 gi|312136937|ref|YP_004004274.1| - 8.3e-19 67.6 0.0 1.2e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|312136937|ref|YP_004004274.1| - 5.7e-14 51.9 0.2 2.4e-07 30.3 0.0 2.9 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Septin PF00735.13 gi|312136937|ref|YP_004004274.1| - 3.3e-07 29.5 0.1 1.3e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Septin Miro PF08477.8 gi|312136937|ref|YP_004004274.1| - 7.9e-06 26.3 0.1 0.00012 22.5 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|312136937|ref|YP_004004274.1| - 7.9e-06 25.2 0.2 6.3e-05 22.3 0.2 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.16 gi|312136937|ref|YP_004004274.1| - 9.3e-06 24.9 0.0 0.004 16.4 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|312136937|ref|YP_004004274.1| - 6e-05 22.9 0.0 0.071 12.9 0.0 2.2 1 1 1 2 2 2 2 Dynamin family AAA_17 PF13207.1 gi|312136937|ref|YP_004004274.1| - 0.0011 19.7 0.1 0.0021 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|312136937|ref|YP_004004274.1| - 0.0076 16.4 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRPRB PF09439.5 gi|312136937|ref|YP_004004274.1| - 0.0098 15.1 0.0 2.2 7.4 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|312136937|ref|YP_004004274.1| - 0.01 16.1 0.0 0.02 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|312136937|ref|YP_004004274.1| - 0.027 14.6 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MMR_HSR1_C PF08438.5 gi|312136937|ref|YP_004004274.1| - 0.034 14.3 0.0 0.064 13.4 0.0 1.4 1 0 0 1 1 1 0 GTPase of unknown function C-terminal DUF258 PF03193.11 gi|312136937|ref|YP_004004274.1| - 0.034 13.3 0.0 0.073 12.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|312136937|ref|YP_004004274.1| - 0.035 14.4 0.1 0.061 13.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|312136937|ref|YP_004004274.1| - 0.037 14.3 0.0 0.052 13.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|312136937|ref|YP_004004274.1| - 0.042 12.7 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Arch_ATPase PF01637.13 gi|312136937|ref|YP_004004274.1| - 0.044 13.4 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|312136937|ref|YP_004004274.1| - 0.074 12.4 0.1 0.99 8.8 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Hydrolase_6 PF13344.1 gi|312136937|ref|YP_004004274.1| - 0.092 12.6 0.0 0.26 11.2 0.0 1.7 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase AAA_25 PF13481.1 gi|312136937|ref|YP_004004274.1| - 0.14 11.5 0.0 0.48 9.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Lactamase_B_3 PF13483.1 gi|312136938|ref|YP_004004275.1| - 5e-30 104.3 0.0 6.9e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|312136938|ref|YP_004004275.1| - 2.6e-20 72.8 0.2 3.3e-20 72.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|312136938|ref|YP_004004275.1| - 1.6e-12 47.5 1.2 6.9e-12 45.4 0.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1469 PF07332.6 gi|312136939|ref|YP_004004276.1| - 0.0013 18.4 0.1 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF87 PF01935.12 gi|312136939|ref|YP_004004276.1| - 0.0082 15.9 3.4 0.015 15.1 2.4 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 Syntaxin_2 PF14523.1 gi|312136939|ref|YP_004004276.1| - 0.023 14.7 4.9 0.12 12.4 3.1 2.3 1 1 1 2 2 2 0 Syntaxin-like protein Bap31 PF05529.7 gi|312136939|ref|YP_004004276.1| - 0.026 14.0 2.8 0.098 12.1 1.9 1.9 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like DUF4446 PF14584.1 gi|312136939|ref|YP_004004276.1| - 0.062 13.1 0.2 0.3 10.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) COG5 PF10392.4 gi|312136939|ref|YP_004004276.1| - 0.12 12.2 2.3 0.2 11.6 0.9 1.9 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.6 gi|312136939|ref|YP_004004276.1| - 0.38 11.1 3.2 3.9 7.9 0.1 2.6 1 1 0 2 2 2 0 Syntaxin 6, N-terminal IncA PF04156.9 gi|312136939|ref|YP_004004276.1| - 5.9 6.4 6.6 16 4.9 4.6 1.8 1 1 0 1 1 1 0 IncA protein Translin PF01997.11 gi|312136940|ref|YP_004004277.1| - 4.2e-41 140.7 0.6 5.4e-41 140.4 0.4 1.1 1 0 0 1 1 1 1 Translin family HemY_N PF07219.8 gi|312136940|ref|YP_004004277.1| - 0.0051 16.3 0.2 0.036 13.6 0.0 2.3 2 1 1 3 3 3 1 HemY protein N-terminus YtxC PF08812.6 gi|312136940|ref|YP_004004277.1| - 0.017 14.6 1.0 0.029 13.8 0.1 1.9 2 1 0 2 2 2 0 YtxC-like family DUF3829 PF12889.2 gi|312136940|ref|YP_004004277.1| - 0.11 11.6 3.4 0.16 11.1 1.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3829) PhoU PF01895.14 gi|312136940|ref|YP_004004277.1| - 0.12 12.7 11.6 0.92 9.9 0.3 3.2 2 1 1 3 3 3 0 PhoU domain Rop PF01815.11 gi|312136940|ref|YP_004004277.1| - 0.9 9.0 4.8 1.3 8.4 0.3 2.4 2 0 0 2 2 2 0 Rop protein PIG-L PF02585.12 gi|312136941|ref|YP_004004278.1| - 3.5e-29 101.8 0.0 6.1e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DUF3463 PF11946.3 gi|312136941|ref|YP_004004278.1| - 0.02 14.4 0.5 0.035 13.6 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Hydrolase PF00702.21 gi|312136942|ref|YP_004004279.1| - 7.2e-20 72.3 0.1 1.9e-19 70.9 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|312136942|ref|YP_004004279.1| - 2.4e-13 50.6 0.0 3.8e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|312136942|ref|YP_004004279.1| - 4.9e-05 23.6 0.0 0.00014 22.1 0.0 1.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|312136942|ref|YP_004004279.1| - 0.00012 21.7 2.0 0.17 11.4 0.0 3.6 3 2 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|312136942|ref|YP_004004279.1| - 0.00047 20.0 0.1 0.0071 16.2 0.0 2.8 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase DUF1456 PF07308.8 gi|312136942|ref|YP_004004279.1| - 0.0084 16.1 0.1 0.15 12.1 0.1 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1456) AhpC-TSA PF00578.16 gi|312136942|ref|YP_004004279.1| - 0.024 14.3 0.4 0.51 10.0 0.0 2.9 2 2 1 3 3 3 0 AhpC/TSA family Glyco_trans_4_2 PF13477.1 gi|312136942|ref|YP_004004279.1| - 0.048 13.4 0.4 0.37 10.6 0.0 2.5 2 1 1 3 3 3 0 Glycosyl transferase 4-like SpoU_sub_bind PF08032.7 gi|312136942|ref|YP_004004279.1| - 0.53 10.4 2.3 4.3 7.5 0.1 3.2 3 1 1 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding HTH_3 PF01381.17 gi|312136943|ref|YP_004004280.1| - 1.3e-12 47.3 0.5 2.2e-12 46.5 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|312136943|ref|YP_004004280.1| - 4.8e-08 32.9 1.2 9.9e-08 31.9 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|312136943|ref|YP_004004280.1| - 2.8e-05 23.6 0.9 8.2e-05 22.1 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|312136943|ref|YP_004004280.1| - 9.5e-05 22.5 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.1 gi|312136943|ref|YP_004004280.1| - 0.012 15.3 1.7 0.041 13.6 1.2 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) SBP PF03110.9 gi|312136943|ref|YP_004004280.1| - 0.023 14.9 1.1 0.038 14.1 0.8 1.4 1 0 0 1 1 1 0 SBP domain RRM_5 PF13893.1 gi|312136943|ref|YP_004004280.1| - 0.025 14.4 1.1 1.9 8.4 0.1 3.4 3 0 0 3 3 3 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Arc_trans_TRASH PF08394.5 gi|312136943|ref|YP_004004280.1| - 0.062 13.4 0.3 0.15 12.2 0.2 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain HTH_32 PF13565.1 gi|312136943|ref|YP_004004280.1| - 0.14 12.9 2.1 0.14 12.9 0.5 1.8 2 0 0 2 2 2 0 Homeodomain-like domain CRCB PF02537.10 gi|312136944|ref|YP_004004281.1| - 4.8e-30 103.8 11.8 5.9e-30 103.5 8.2 1.1 1 0 0 1 1 1 1 CrcB-like protein FTR1 PF03239.9 gi|312136944|ref|YP_004004281.1| - 0.095 11.6 3.1 0.11 11.3 1.5 1.5 1 1 1 2 2 2 0 Iron permease FTR1 family DUF190 PF02641.10 gi|312136945|ref|YP_004004282.1| - 5.2e-33 112.9 0.6 6.1e-33 112.6 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 HMD PF03201.11 gi|312136946|ref|YP_004004283.1| - 1e-39 134.3 0.6 3.6e-39 132.6 0.2 2.0 2 0 0 2 2 2 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase IlvN PF07991.7 gi|312136946|ref|YP_004004283.1| - 0.0069 15.7 0.2 0.042 13.2 0.1 2.3 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|312136946|ref|YP_004004283.1| - 0.033 14.0 0.0 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_hydro_4 PF02056.11 gi|312136946|ref|YP_004004283.1| - 0.055 12.7 0.0 0.24 10.7 0.0 2.0 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase Fibrillarin_2 PF10113.4 gi|312136947|ref|YP_004004284.1| - 2.1e-248 824.7 2.1 2.3e-248 824.6 1.4 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein FlpD PF02662.11 gi|312136948|ref|YP_004004285.1| - 4.7e-58 194.2 0.0 5.3e-58 194.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FrhB_FdhB_C PF04432.8 gi|312136949|ref|YP_004004286.1| - 1.8e-42 144.5 0.1 1.8e-42 144.5 0.1 2.3 2 1 1 3 3 3 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|312136949|ref|YP_004004286.1| - 2.2e-25 88.3 0.0 2.5e-24 84.9 0.0 2.1 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|312136949|ref|YP_004004286.1| - 4.3e-10 39.4 13.8 4.3e-10 39.4 9.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136949|ref|YP_004004286.1| - 1.9e-07 30.6 14.4 0.00029 20.5 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312136949|ref|YP_004004286.1| - 8.7e-06 25.9 30.2 0.00059 20.0 13.8 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136949|ref|YP_004004286.1| - 1.3e-05 25.8 8.4 0.055 14.2 0.2 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|312136949|ref|YP_004004286.1| - 2.7e-05 24.5 18.0 7e-05 23.1 7.0 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312136949|ref|YP_004004286.1| - 4.5e-05 22.8 15.3 0.0003 20.2 3.3 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136949|ref|YP_004004286.1| - 0.00014 21.5 31.1 0.0004 20.1 1.3 3.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136949|ref|YP_004004286.1| - 0.00029 21.1 16.7 0.00029 21.1 11.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312136949|ref|YP_004004286.1| - 0.00069 19.7 4.7 0.00069 19.7 3.2 3.3 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136949|ref|YP_004004286.1| - 0.0013 19.0 22.2 0.01 16.1 2.4 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312136949|ref|YP_004004286.1| - 0.0057 16.4 12.9 0.3 10.9 0.4 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136949|ref|YP_004004286.1| - 0.0078 16.0 5.0 0.0078 16.0 3.4 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|312136949|ref|YP_004004286.1| - 0.0081 16.6 4.4 0.0081 16.6 3.1 3.8 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|312136949|ref|YP_004004286.1| - 0.0091 16.3 16.2 0.26 11.7 4.1 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|312136949|ref|YP_004004286.1| - 5.5 7.6 12.1 2.4 8.7 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|312136950|ref|YP_004004287.1| - 6.2e-20 71.3 0.2 2.2e-10 39.8 0.0 2.1 1 1 0 2 2 2 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|312136950|ref|YP_004004287.1| - 4e-13 48.9 3.0 8.7e-13 47.8 2.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FlpD PF02662.11 gi|312136951|ref|YP_004004288.1| - 2.2e-57 192.1 0.1 2.4e-57 191.9 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Response_reg PF00072.19 gi|312136951|ref|YP_004004288.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Response regulator receiver domain Oxidored_q6 PF01058.17 gi|312136952|ref|YP_004004289.1| - 1.4e-30 105.5 0.0 3.1e-30 104.4 0.0 1.6 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|312136953|ref|YP_004004290.1| - 1.3e-42 146.2 0.2 2.6e-21 75.9 0.0 3.1 2 1 0 3 3 3 3 Nickel-dependent hydrogenase RTX PF02382.10 gi|312136953|ref|YP_004004290.1| - 0.053 11.7 0.0 0.089 11.0 0.0 1.3 1 0 0 1 1 1 0 RTX N-terminal domain Fer4 PF00037.22 gi|312136954|ref|YP_004004291.1| - 3.4e-67 219.5 131.0 1.8e-08 33.5 3.4 12.6 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312136954|ref|YP_004004291.1| - 2.8e-56 187.7 97.2 1.7e-12 47.5 6.8 8.0 5 2 4 9 9 9 9 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136954|ref|YP_004004291.1| - 1.9e-52 175.3 223.8 5.1e-09 36.2 7.4 8.3 1 1 11 12 12 12 12 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312136954|ref|YP_004004291.1| - 6.2e-45 149.2 120.7 2.1e-07 30.4 1.3 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312136954|ref|YP_004004291.1| - 1.8e-44 149.3 103.5 3.3e-09 36.3 9.4 8.2 4 2 5 9 9 9 9 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312136954|ref|YP_004004291.1| - 8.5e-40 135.3 92.2 1.2e-08 35.5 6.3 11.0 7 3 5 12 12 12 12 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|312136954|ref|YP_004004291.1| - 5.4e-32 107.7 120.7 2.8e-05 23.7 2.2 12.3 12 0 0 12 12 12 10 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312136954|ref|YP_004004291.1| - 2.9e-31 107.1 106.3 3.1e-10 39.7 6.7 8.5 4 3 5 9 9 9 9 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312136954|ref|YP_004004291.1| - 5.4e-29 100.0 96.8 1.5e-07 31.2 5.3 8.6 4 2 5 9 9 9 9 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312136954|ref|YP_004004291.1| - 2.3e-24 83.9 153.4 0.008 16.6 3.5 12.4 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_4 PF12800.2 gi|312136954|ref|YP_004004291.1| - 1.6e-23 80.9 117.2 0.012 15.9 1.4 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312136954|ref|YP_004004291.1| - 8.2e-19 67.7 101.1 1.7e-05 25.0 5.4 10.4 4 3 3 8 8 8 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136954|ref|YP_004004291.1| - 1.3e-16 60.7 120.4 0.00031 21.1 0.9 12.1 7 5 5 12 12 12 10 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312136954|ref|YP_004004291.1| - 4.7e-13 48.8 60.5 0.0029 17.4 6.4 6.0 3 1 3 6 6 6 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312136954|ref|YP_004004291.1| - 3.5e-11 43.4 100.3 0.00071 20.0 1.2 12.3 7 4 4 11 11 11 7 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312136954|ref|YP_004004291.1| - 5.3e-05 23.5 9.4 0.00054 20.2 0.3 12.1 11 2 0 11 11 11 3 4Fe-4S single cluster domain MDH PF02315.11 gi|312136954|ref|YP_004004291.1| - 5.7 6.9 8.8 18 5.3 0.1 4.0 4 0 0 4 4 4 0 Methanol dehydrogenase beta subunit MCR_beta PF02241.13 gi|312136955|ref|YP_004004292.1| - 5.4e-155 514.0 2.9 8.1e-155 513.4 2.0 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|312136955|ref|YP_004004292.1| - 3.1e-90 300.5 4.9 4.7e-90 299.9 3.4 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Phe_tRNA-synt_N PF02912.13 gi|312136955|ref|YP_004004292.1| - 0.028 14.1 0.1 0.081 12.6 0.0 1.7 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain MCR_D PF02505.9 gi|312136956|ref|YP_004004293.1| - 4e-68 227.7 2.9 4.5e-68 227.6 2.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_gamma PF02240.11 gi|312136957|ref|YP_004004294.1| - 8.3e-143 473.8 1.5 9.6e-143 473.6 1.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit IBV_3B PF03622.8 gi|312136957|ref|YP_004004294.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 IBV 3B protein MCR_alpha_N PF02745.10 gi|312136958|ref|YP_004004295.1| - 2.2e-166 551.6 0.1 2.9e-166 551.2 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|312136958|ref|YP_004004295.1| - 6e-68 226.6 1.3 3.4e-67 224.2 1.7 1.8 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.10 gi|312136958|ref|YP_004004295.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain RNA_bind_2 PF10133.4 gi|312136959|ref|YP_004004296.1| - 6.2e-20 70.9 8.0 6.8e-20 70.8 5.6 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein ALS_ss_C PF10369.4 gi|312136959|ref|YP_004004296.1| - 0.14 11.8 0.4 0.18 11.5 0.3 1.1 1 0 0 1 1 1 0 Small subunit of acetolactate synthase dUTPase PF00692.14 gi|312136960|ref|YP_004004297.1| - 4.6e-09 35.8 0.0 7.1e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|312136960|ref|YP_004004297.1| - 0.1 10.9 0.1 1.4 7.2 0.0 2.2 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HisG PF01634.13 gi|312136961|ref|YP_004004298.1| - 3.7e-59 198.9 1.2 5.5e-59 198.3 0.8 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|312136961|ref|YP_004004298.1| - 9.5e-27 92.7 1.1 1.8e-26 91.8 0.8 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|312136961|ref|YP_004004298.1| - 6.1e-05 22.7 1.2 0.016 14.8 0.8 3.1 1 1 0 1 1 1 1 NMT1/THI5 like TMF_TATA_bd PF12325.3 gi|312136961|ref|YP_004004298.1| - 0.0073 16.0 1.9 0.013 15.1 1.3 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding DUF881 PF05949.7 gi|312136961|ref|YP_004004298.1| - 0.015 14.7 0.4 0.04 13.3 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF881) RNA_pol_Rpb4 PF03874.11 gi|312136961|ref|YP_004004298.1| - 0.018 15.0 2.9 0.03 14.3 2.0 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb4 AMP-binding PF00501.23 gi|312136961|ref|YP_004004298.1| - 0.025 13.0 0.0 0.036 12.4 0.0 1.2 1 0 0 1 1 1 0 AMP-binding enzyme CCG PF02754.11 gi|312136963|ref|YP_004004300.1| - 4.1e-41 138.8 0.6 3.8e-21 74.8 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain DUF2024 PF09630.5 gi|312136963|ref|YP_004004300.1| - 0.08 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) Fer4_8 PF13183.1 gi|312136964|ref|YP_004004301.1| - 5.5e-12 45.5 9.1 9.9e-12 44.7 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312136964|ref|YP_004004301.1| - 1.5e-09 38.0 9.4 3e-09 37.0 6.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312136964|ref|YP_004004301.1| - 2.1e-08 34.3 8.6 4.3e-08 33.2 5.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312136964|ref|YP_004004301.1| - 6.4e-06 25.8 9.4 1.5e-05 24.7 6.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312136964|ref|YP_004004301.1| - 9.9e-06 25.8 9.7 3.2e-05 24.2 6.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312136964|ref|YP_004004301.1| - 0.00019 21.2 6.0 0.00042 20.1 4.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312136964|ref|YP_004004301.1| - 0.00036 20.8 10.8 0.026 14.9 0.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312136964|ref|YP_004004301.1| - 0.0015 18.3 11.7 0.19 11.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|312136964|ref|YP_004004301.1| - 0.0052 16.3 12.6 0.17 11.5 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|312136964|ref|YP_004004301.1| - 0.012 15.2 5.8 0.042 13.4 0.5 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|312136964|ref|YP_004004301.1| - 0.012 15.8 11.9 0.03 14.6 1.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|312136964|ref|YP_004004301.1| - 0.042 14.5 12.4 0.96 10.2 1.8 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|312136964|ref|YP_004004301.1| - 0.39 11.3 14.4 0.48 11.1 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312136964|ref|YP_004004301.1| - 3.8 8.1 8.3 0.62 10.6 1.1 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF4535 PF15054.1 gi|312136965|ref|YP_004004302.1| - 0.28 10.6 1.7 0.33 10.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4535) Pyridox_oxidase PF01243.15 gi|312136966|ref|YP_004004303.1| - 4.2e-08 33.1 0.0 7.4e-08 32.3 0.0 1.4 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|312136966|ref|YP_004004303.1| - 0.016 14.7 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) QRPTase_C PF01729.14 gi|312136967|ref|YP_004004304.1| - 7.9e-61 204.4 1.5 1.1e-60 203.9 1.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|312136967|ref|YP_004004304.1| - 5.8e-28 96.5 0.2 1.3e-27 95.4 0.1 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peripla_BP_4 PF13407.1 gi|312136967|ref|YP_004004304.1| - 0.011 15.0 0.2 0.021 14.1 0.2 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain CLASP_N PF12348.3 gi|312136967|ref|YP_004004304.1| - 0.028 13.8 0.7 0.066 12.5 0.5 1.6 1 1 0 1 1 1 0 CLASP N terminal DUF3783 PF12646.2 gi|312136967|ref|YP_004004304.1| - 0.15 11.7 0.3 0.15 11.7 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) Lactamase_B_2 PF12706.2 gi|312136968|ref|YP_004004305.1| - 1.8e-34 119.0 0.0 2.6e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|312136968|ref|YP_004004305.1| - 9.4e-18 64.5 0.0 1.3e-14 54.3 0.0 3.0 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|312136968|ref|YP_004004305.1| - 2.7e-05 23.5 0.0 5.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.10 gi|312136968|ref|YP_004004305.1| - 0.0035 16.3 0.0 0.0059 15.5 0.0 1.3 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II Phage_Gp111 PF07410.6 gi|312136968|ref|YP_004004305.1| - 0.23 11.6 0.1 0.23 11.6 0.1 2.5 2 1 0 2 2 2 0 Streptococcus thermophilus bacteriophage Gp111 protein MS_channel PF00924.13 gi|312136969|ref|YP_004004306.1| - 2.2e-45 154.5 6.8 3.2e-45 153.9 4.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Sipho_tail PF05709.6 gi|312136969|ref|YP_004004306.1| - 0.021 13.9 0.0 1.9 7.5 0.1 2.1 1 1 1 2 2 2 0 Phage tail protein DUF3822 PF12864.2 gi|312136969|ref|YP_004004306.1| - 0.045 12.9 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3822) FtsX PF02687.16 gi|312136969|ref|YP_004004306.1| - 2.6 7.8 11.0 5.2 6.8 6.0 2.1 1 1 1 2 2 2 0 FtsX-like permease family DUF1056 PF06341.6 gi|312136969|ref|YP_004004306.1| - 3.7 7.6 10.6 0.42 10.6 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1056) Sortase PF04203.8 gi|312136970|ref|YP_004004307.1| - 1.7e-14 53.4 0.0 2.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Sortase family NadA PF02445.11 gi|312136971|ref|YP_004004308.1| - 1.6e-114 381.7 8.5 1.8e-114 381.5 5.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF3889 PF13028.1 gi|312136971|ref|YP_004004308.1| - 0.15 11.6 1.7 14 5.4 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3889) XPG_I PF00867.13 gi|312136971|ref|YP_004004308.1| - 0.17 11.9 1.3 0.33 11.0 0.0 2.2 3 0 0 3 3 3 0 XPG I-region Saccharop_dh_N PF04455.7 gi|312136972|ref|YP_004004309.1| - 1.8e-30 105.0 0.1 3.4e-30 104.1 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region FBPase_3 PF01950.11 gi|312136973|ref|YP_004004310.1| - 1.4e-191 636.2 0.0 1.6e-191 636.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF434 PF04256.7 gi|312136974|ref|YP_004004311.1| - 7.8e-22 76.4 2.7 1.3e-21 75.6 1.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF863 PF05904.6 gi|312136974|ref|YP_004004311.1| - 0.035 12.3 0.0 0.035 12.3 0.0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF863) PhoU_div PF01865.11 gi|312136975|ref|YP_004004312.1| - 7.3e-56 188.7 11.7 8.8e-56 188.4 8.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|312136975|ref|YP_004004312.1| - 6.1e-06 26.6 10.1 0.00016 22.0 1.3 2.5 2 1 0 2 2 2 2 PhoU domain FliJ PF02050.11 gi|312136975|ref|YP_004004312.1| - 0.001 19.1 4.4 0.0021 18.0 0.4 2.3 2 0 0 2 2 2 1 Flagellar FliJ protein DUF3585 PF12130.3 gi|312136975|ref|YP_004004312.1| - 0.0018 18.1 5.1 0.054 13.3 0.4 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3585) FliD_C PF07195.7 gi|312136975|ref|YP_004004312.1| - 0.011 15.0 2.7 1.5 8.0 0.0 2.6 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Mnd1 PF03962.10 gi|312136975|ref|YP_004004312.1| - 0.015 14.9 6.6 0.11 12.1 1.0 2.1 2 0 0 2 2 2 0 Mnd1 family Vps51 PF08700.6 gi|312136975|ref|YP_004004312.1| - 0.021 14.6 2.6 1.9 8.3 0.1 3.1 2 2 1 3 3 3 0 Vps51/Vps67 YkuI_C PF10388.4 gi|312136975|ref|YP_004004312.1| - 0.021 14.4 2.1 0.021 14.4 1.5 2.2 2 0 0 2 2 2 0 EAL-domain associated signalling protein domain Nup54 PF13874.1 gi|312136975|ref|YP_004004312.1| - 0.027 14.1 1.9 0.64 9.6 0.0 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Tropomyosin_1 PF12718.2 gi|312136975|ref|YP_004004312.1| - 0.049 13.4 15.4 0.42 10.4 3.5 2.7 2 1 0 2 2 2 0 Tropomyosin like ApoLp-III PF07464.6 gi|312136975|ref|YP_004004312.1| - 0.051 13.5 9.1 1 9.3 1.5 2.6 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) BLOC1_2 PF10046.4 gi|312136975|ref|YP_004004312.1| - 0.14 12.2 9.8 1.6 8.9 0.1 3.3 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Uds1 PF15456.1 gi|312136975|ref|YP_004004312.1| - 0.14 12.1 4.1 0.76 9.7 0.1 2.7 2 1 0 2 2 2 0 Up-regulated During Septation Peptidase_M75 PF09375.5 gi|312136975|ref|YP_004004312.1| - 0.15 11.3 0.7 0.25 10.6 0.4 1.4 1 1 0 1 1 1 0 Imelysin Vac_Fusion PF02346.11 gi|312136975|ref|YP_004004312.1| - 0.16 11.4 6.0 3 7.3 0.2 3.8 3 2 2 5 5 5 0 Chordopoxvirus fusion protein DUF948 PF06103.6 gi|312136975|ref|YP_004004312.1| - 0.17 11.7 2.9 0.84 9.5 0.1 3.2 3 2 0 3 3 3 0 Bacterial protein of unknown function (DUF948) She9_MDM33 PF05546.6 gi|312136975|ref|YP_004004312.1| - 0.34 10.4 4.8 3.2 7.2 0.1 2.4 2 1 0 2 2 2 0 She9 / Mdm33 family Glyco_hydro_4C PF11975.3 gi|312136975|ref|YP_004004312.1| - 0.37 10.5 5.7 0.074 12.8 0.5 1.9 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase C-terminal domain Effector_1 PF04518.7 gi|312136975|ref|YP_004004312.1| - 0.44 9.4 2.8 5.2 5.9 0.0 2.1 1 1 1 2 2 2 0 Effector from type III secretion system CorA PF01544.13 gi|312136975|ref|YP_004004312.1| - 0.44 9.5 5.5 5.9 5.8 0.2 2.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein GlutR_dimer PF00745.15 gi|312136975|ref|YP_004004312.1| - 0.56 10.1 7.3 0.35 10.8 0.6 2.6 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain Spectrin PF00435.16 gi|312136975|ref|YP_004004312.1| - 0.66 10.2 6.1 1.4 9.2 0.4 2.5 2 0 0 2 2 2 0 Spectrin repeat IZUMO PF15005.1 gi|312136975|ref|YP_004004312.1| - 0.87 9.6 5.5 6.1 6.8 0.4 2.6 1 1 1 2 2 2 0 Izumo sperm-egg fusion Fib_alpha PF08702.5 gi|312136975|ref|YP_004004312.1| - 0.93 9.6 4.0 4.1 7.5 1.1 2.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family GvpK PF05121.7 gi|312136975|ref|YP_004004312.1| - 1.3 8.9 4.3 13 5.7 0.5 3.2 2 2 1 3 3 3 0 Gas vesicle protein K IMD PF08397.6 gi|312136975|ref|YP_004004312.1| - 1.4 8.2 9.0 0.14 11.4 2.8 1.8 2 0 0 2 2 2 0 IRSp53/MIM homology domain Remorin_C PF03763.8 gi|312136975|ref|YP_004004312.1| - 2.3 7.7 8.1 1.6 8.2 0.1 2.6 2 0 0 2 2 2 0 Remorin, C-terminal region Phasin PF05597.6 gi|312136975|ref|YP_004004312.1| - 3.9 7.2 8.8 2.4 7.9 0.6 2.8 2 2 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF16 PF01519.11 gi|312136975|ref|YP_004004312.1| - 3.9 7.7 11.1 1.7 8.8 2.9 2.5 2 1 0 2 2 2 0 Protein of unknown function DUF16 ISG65-75 PF11727.3 gi|312136975|ref|YP_004004312.1| - 4.2 6.3 8.8 0.79 8.7 1.4 2.2 2 0 0 2 2 2 0 Invariant surface glycoprotein UvrD-helicase PF00580.16 gi|312136975|ref|YP_004004312.1| - 9.1 5.4 10.4 6.3 5.9 1.0 2.1 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF357 PF04010.8 gi|312136976|ref|YP_004004313.1| - 4.9e-21 74.2 0.5 6e-21 73.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CDP-OH_P_transf PF01066.16 gi|312136977|ref|YP_004004314.1| - 1.1e-14 54.4 13.9 7.3e-14 51.8 9.7 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase UPF0139 PF03669.8 gi|312136977|ref|YP_004004314.1| - 0.025 14.0 1.1 0.17 11.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) Flavi_capsid PF01003.14 gi|312136977|ref|YP_004004314.1| - 0.058 12.9 1.0 2.2 7.8 0.0 2.5 2 1 0 2 2 2 0 Flavivirus capsid protein C DUF2207 PF09972.4 gi|312136977|ref|YP_004004314.1| - 4.6 5.7 8.9 1.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) NAD_synthase PF02540.12 gi|312136978|ref|YP_004004315.1| - 1.1e-97 325.7 0.1 1.2e-97 325.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|312136978|ref|YP_004004315.1| - 3.8e-12 45.4 0.0 4.6e-08 32.0 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|312136978|ref|YP_004004315.1| - 0.00037 19.8 0.0 0.0016 17.7 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|312136978|ref|YP_004004315.1| - 0.00055 19.5 0.0 0.00085 18.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Trp_repressor PF01371.14 gi|312136978|ref|YP_004004315.1| - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Trp repressor protein HTH_23 PF13384.1 gi|312136978|ref|YP_004004315.1| - 0.0087 15.6 0.0 0.67 9.6 0.0 3.0 3 0 0 3 3 3 1 Homeodomain-like domain Phage_terminase PF10668.4 gi|312136978|ref|YP_004004315.1| - 0.011 15.5 0.5 5.7 6.8 0.0 2.9 3 0 0 3 3 3 0 Phage terminase small subunit ThiI PF02568.9 gi|312136978|ref|YP_004004315.1| - 0.037 13.4 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CutA1 PF03091.10 gi|312136979|ref|YP_004004316.1| - 9.7e-34 115.1 4.3 1.1e-33 114.9 3.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein ATP-synt_F PF01990.12 gi|312136979|ref|YP_004004316.1| - 0.023 15.0 4.7 0.63 10.4 0.7 2.2 1 1 1 2 2 2 0 ATP synthase (F/14-kDa) subunit ProRS-C_2 PF09181.5 gi|312136979|ref|YP_004004316.1| - 0.028 14.3 1.3 0.043 13.7 0.5 1.5 1 1 1 2 2 2 0 Prolyl-tRNA synthetase, C-terminal Pox_vIL-18BP PF05566.7 gi|312136979|ref|YP_004004316.1| - 0.05 13.6 0.1 0.085 12.8 0.1 1.7 1 1 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein Ribosomal_S13 PF00416.17 gi|312136979|ref|YP_004004316.1| - 0.052 13.9 0.2 0.082 13.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S13/S18 P2 PF07194.6 gi|312136979|ref|YP_004004316.1| - 0.09 12.6 1.5 0.17 11.7 0.6 1.7 1 1 1 2 2 2 0 P2 response regulator binding domain DEP PF00610.16 gi|312136979|ref|YP_004004316.1| - 0.13 11.9 0.0 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) tRNA-synt_1 PF00133.17 gi|312136980|ref|YP_004004317.1| - 7.9e-74 248.7 8.6 7.5e-65 219.0 4.5 2.7 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|312136980|ref|YP_004004317.1| - 1.5e-30 105.9 4.1 4.1e-30 104.5 2.8 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|312136980|ref|YP_004004317.1| - 6.3e-27 94.2 18.9 1.7e-13 50.0 3.0 3.6 3 1 1 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|312136980|ref|YP_004004317.1| - 4.4e-10 39.1 5.3 7.4e-10 38.4 0.0 2.8 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|312136980|ref|YP_004004317.1| - 1.5e-08 34.1 3.3 0.0003 20.0 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|312136980|ref|YP_004004317.1| - 2.2e-06 26.7 0.5 0.00034 19.5 0.0 3.2 3 1 0 3 3 3 1 tRNA synthetases class I (R) Hexapep PF00132.19 gi|312136981|ref|YP_004004318.1| - 4e-34 114.6 33.9 1.1e-09 37.3 1.6 4.9 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|312136981|ref|YP_004004318.1| - 3.5e-16 58.4 12.3 9.1e-07 28.3 0.2 4.5 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase tRNA_Me_trans PF03054.11 gi|312136982|ref|YP_004004319.1| - 1.8e-06 26.7 4.7 2.3e-05 23.1 3.3 2.2 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.9 gi|312136982|ref|YP_004004319.1| - 4.9e-06 26.1 0.2 1.4e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|312136982|ref|YP_004004319.1| - 1.1e-05 24.8 0.0 4.3e-05 22.8 0.0 1.9 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|312136982|ref|YP_004004319.1| - 0.00011 21.7 0.0 0.00029 20.3 0.0 1.7 1 0 0 1 1 1 1 PP-loop family KH_4 PF13083.1 gi|312136982|ref|YP_004004319.1| - 0.016 14.8 1.2 0.036 13.7 0.8 1.6 1 0 0 1 1 1 0 KH domain Asn_synthase PF00733.16 gi|312136982|ref|YP_004004319.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase RHH_1 PF01402.16 gi|312136982|ref|YP_004004319.1| - 0.32 10.9 2.0 3.5 7.6 0.0 2.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family NAD_synthase PF02540.12 gi|312136982|ref|YP_004004319.1| - 0.32 9.8 3.1 0.62 8.9 0.1 2.7 2 1 0 3 3 3 0 NAD synthase Flu_NS2 PF00601.14 gi|312136982|ref|YP_004004319.1| - 1.7 8.8 5.4 4.6 7.5 1.0 2.8 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) KH_2 PF07650.12 gi|312136982|ref|YP_004004319.1| - 3.7 7.1 9.6 0.64 9.6 3.3 2.4 2 1 0 2 2 2 0 KH domain DUF3096 PF11295.3 gi|312136983|ref|YP_004004320.1| - 0.00016 21.0 14.5 0.00018 20.9 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|312136983|ref|YP_004004320.1| - 0.0087 16.0 13.6 0.016 15.2 9.4 1.4 1 1 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF3953 PF13129.1 gi|312136983|ref|YP_004004320.1| - 0.071 12.7 2.3 0.57 9.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) DUF2892 PF11127.3 gi|312136983|ref|YP_004004320.1| - 0.1 12.4 2.4 0.1 12.4 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) MMgT PF10270.4 gi|312136983|ref|YP_004004320.1| - 0.28 11.6 4.1 1.4 9.3 0.2 2.0 1 1 1 2 2 2 0 Membrane magnesium transporter SdpI PF13630.1 gi|312136983|ref|YP_004004320.1| - 0.33 10.6 5.9 0.4 10.4 4.1 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4064 PF13273.1 gi|312136983|ref|YP_004004320.1| - 0.56 10.3 7.8 0.68 10.0 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF417 PF04224.7 gi|312136983|ref|YP_004004320.1| - 0.94 8.8 4.2 1.1 8.6 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF417 PGPGW PF09656.5 gi|312136983|ref|YP_004004320.1| - 1.2 8.4 12.8 0.55 9.5 2.9 2.3 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) DUF202 PF02656.10 gi|312136983|ref|YP_004004320.1| - 6 7.1 6.8 1.1e+02 3.0 4.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.3 gi|312136983|ref|YP_004004320.1| - 6.8 6.8 8.3 14 5.8 5.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) ATPgrasp_Ter PF15632.1 gi|312136984|ref|YP_004004321.1| - 1.8e-17 63.1 0.1 2.8e-16 59.1 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|312136984|ref|YP_004004321.1| - 2.1e-15 56.9 0.9 3.2e-15 56.3 0.6 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|312136984|ref|YP_004004321.1| - 8.4e-15 54.9 0.0 1.5e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|312136984|ref|YP_004004321.1| - 2.7e-09 36.6 0.1 5.2e-09 35.6 0.1 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|312136984|ref|YP_004004321.1| - 1.3e-07 31.0 0.1 2.4e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|312136984|ref|YP_004004321.1| - 2.8e-07 30.1 0.8 5.7e-07 29.1 0.6 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|312136984|ref|YP_004004321.1| - 9.5e-06 25.3 0.9 1.7e-05 24.5 0.6 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|312136984|ref|YP_004004321.1| - 0.00087 18.8 0.5 0.0027 17.1 0.2 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Glycos_transf_4 PF00953.16 gi|312136985|ref|YP_004004322.1| - 2.3e-27 95.7 26.1 2.2e-26 92.5 9.1 3.5 4 0 0 4 4 4 2 Glycosyl transferase family 4 MraY_sig1 PF10555.4 gi|312136985|ref|YP_004004322.1| - 0.0088 15.2 3.0 0.024 13.8 2.1 1.8 1 0 0 1 1 1 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Mur_ligase_M PF08245.7 gi|312136986|ref|YP_004004323.1| - 1.5e-27 96.9 2.6 1.5e-27 96.9 1.8 2.2 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|312136986|ref|YP_004004323.1| - 5.9e-10 39.0 0.0 7.9e-09 35.4 0.0 2.8 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain PTCB-BRCT PF12738.2 gi|312136986|ref|YP_004004323.1| - 0.12 12.2 0.7 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 twin BRCT domain DZR PF12773.2 gi|312136988|ref|YP_004004325.1| - 0.025 14.4 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312136988|ref|YP_004004325.1| - 0.093 12.2 2.7 2 8.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|312136988|ref|YP_004004325.1| - 0.24 11.1 0.9 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 UPF0051 PF01458.12 gi|312136989|ref|YP_004004326.1| - 9.6e-61 205.1 0.5 1.2e-60 204.8 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|312136990|ref|YP_004004327.1| - 5.9e-22 78.4 0.0 8.1e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312136990|ref|YP_004004327.1| - 1.9e-10 41.2 3.5 6e-08 32.9 2.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|312136990|ref|YP_004004327.1| - 2.3e-06 27.0 0.2 6.8e-05 22.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|312136990|ref|YP_004004327.1| - 0.00068 19.1 0.1 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|312136990|ref|YP_004004327.1| - 0.0082 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|312136990|ref|YP_004004327.1| - 0.02 14.2 0.0 0.064 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|312136990|ref|YP_004004327.1| - 0.044 14.1 4.2 0.23 11.7 3.0 2.0 1 1 0 1 1 1 0 AAA domain LSM14 PF12701.2 gi|312136990|ref|YP_004004327.1| - 0.062 13.1 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 Scd6-like Sm domain AAA_15 PF13175.1 gi|312136990|ref|YP_004004327.1| - 0.11 11.4 0.9 0.58 9.1 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|312136990|ref|YP_004004327.1| - 0.13 12.1 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|312136990|ref|YP_004004327.1| - 0.16 11.3 0.0 0.43 9.9 0.0 1.6 2 0 0 2 2 2 0 MutS domain V UPF0254 PF06787.6 gi|312136991|ref|YP_004004328.1| - 9.5e-68 226.7 0.2 1.1e-67 226.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.12 gi|312136991|ref|YP_004004328.1| - 0.0073 15.7 0.2 0.08 12.3 0.0 2.0 2 0 0 2 2 2 1 Competence-damaged protein ThiF PF00899.16 gi|312136992|ref|YP_004004329.1| - 0.0058 16.4 0.4 0.011 15.5 0.3 1.5 1 1 0 1 1 1 1 ThiF family CoA_binding PF02629.14 gi|312136992|ref|YP_004004329.1| - 0.043 14.3 0.6 0.2 12.1 0.4 2.3 1 1 0 1 1 1 0 CoA binding domain NIF3 PF01784.13 gi|312136993|ref|YP_004004330.1| - 5.3e-42 144.0 0.7 2.9e-33 115.4 0.0 2.1 1 1 1 2 2 2 2 NIF3 (NGG1p interacting factor 3) DUF1188 PF06690.6 gi|312136994|ref|YP_004004331.1| - 3.8e-75 252.2 3.9 4.3e-75 252.0 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Spermine_synth PF01564.12 gi|312136994|ref|YP_004004331.1| - 0.002 17.1 1.3 0.017 14.0 0.2 2.2 1 1 1 2 2 2 2 Spermine/spermidine synthase DUF3236 PF11576.3 gi|312136995|ref|YP_004004332.1| - 1e-69 232.8 1.4 1.1e-69 232.7 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) DUF137 PF02006.11 gi|312136995|ref|YP_004004332.1| - 0.048 13.0 0.2 0.069 12.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF137 BcrAD_BadFG PF01869.15 gi|312136995|ref|YP_004004332.1| - 0.071 12.3 0.1 1.4 8.1 0.1 2.1 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Phasin PF05597.6 gi|312136995|ref|YP_004004332.1| - 0.26 11.0 2.4 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Radical_SAM PF04055.16 gi|312136996|ref|YP_004004333.1| - 1.1e-13 51.6 0.4 5e-13 49.5 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|312136996|ref|YP_004004333.1| - 2e-06 27.5 0.0 1.1e-05 25.1 0.1 2.3 2 1 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain PRC PF05239.11 gi|312136997|ref|YP_004004334.1| - 1.4e-10 40.8 2.6 1.7e-10 40.6 1.8 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF504 PF04457.7 gi|312136997|ref|YP_004004334.1| - 0.011 15.9 0.8 0.028 14.5 0.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF504) NTP_transf_3 PF12804.2 gi|312136998|ref|YP_004004335.1| - 2.2e-18 66.8 0.0 2.7e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|312136998|ref|YP_004004335.1| - 4.5e-12 46.0 0.1 5.9e-12 45.6 0.1 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|312136998|ref|YP_004004335.1| - 3.7e-10 39.5 0.0 4.9e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.14 gi|312136998|ref|YP_004004335.1| - 3.7e-07 29.8 0.0 4.9e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|312136998|ref|YP_004004335.1| - 3e-05 23.1 0.1 7.2e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Guanylyl transferase CofC like DUF2114 PF09887.4 gi|312136999|ref|YP_004004336.1| - 4.6e-223 740.4 0.4 5.9e-223 740.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Ag332 PF04671.7 gi|312136999|ref|YP_004004336.1| - 0.22 11.3 1.0 0.5 10.1 0.7 1.6 1 0 0 1 1 1 0 Erythrocyte membrane-associated giant protein antigen 332 MtrH PF02007.13 gi|312137000|ref|YP_004004337.1| - 1.1e-152 507.1 1.9 1.3e-152 506.9 1.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Pterin_bind PF00809.17 gi|312137000|ref|YP_004004337.1| - 0.014 14.7 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Pterin binding enzyme MtrG PF04210.8 gi|312137001|ref|YP_004004338.1| - 1.1e-26 92.2 1.2 1.2e-26 92.1 0.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2453 PF10507.4 gi|312137001|ref|YP_004004338.1| - 0.028 14.2 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2453) HalX PF08663.5 gi|312137001|ref|YP_004004338.1| - 0.051 13.5 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 HalX domain Adeno_E3_CR2 PF02439.10 gi|312137001|ref|YP_004004338.1| - 0.34 10.4 4.3 0.6 9.6 3.0 1.4 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 MtrF PF09472.5 gi|312137001|ref|YP_004004338.1| - 3.8 6.8 6.3 4.4 6.6 4.4 1.3 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|312137002|ref|YP_004004339.1| - 1.1e-20 72.6 0.5 1.3e-20 72.4 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) YqfD PF06898.6 gi|312137002|ref|YP_004004339.1| - 0.016 13.9 0.3 0.017 13.8 0.2 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD MtrG PF04210.8 gi|312137002|ref|YP_004004339.1| - 0.076 12.6 0.4 0.1 12.2 0.3 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DHDPS PF00701.17 gi|312137002|ref|YP_004004339.1| - 0.1 11.1 0.0 0.1 11.1 0.0 1.1 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family MtrA PF04208.9 gi|312137003|ref|YP_004004340.1| - 2.3e-91 303.9 5.7 2.9e-91 303.6 4.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Ribosomal_L18_c PF14204.1 gi|312137003|ref|YP_004004340.1| - 0.02 15.4 1.4 0.02 15.4 1.0 1.6 2 0 0 2 2 2 0 Ribosomal L18 C-terminal region MinC_N PF05209.8 gi|312137003|ref|YP_004004340.1| - 0.041 13.6 0.1 0.072 12.8 0.1 1.4 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain MtrB PF05440.7 gi|312137004|ref|YP_004004341.1| - 2.3e-29 101.2 0.0 2.5e-29 101.1 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B HSBP1 PF06825.7 gi|312137004|ref|YP_004004341.1| - 0.14 11.7 0.2 0.19 11.2 0.2 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 MtrC PF04211.8 gi|312137005|ref|YP_004004342.1| - 1.2e-73 247.4 22.9 1.3e-73 247.2 15.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrD PF04207.7 gi|312137006|ref|YP_004004343.1| - 1.7e-76 256.4 20.5 2.1e-76 256.2 14.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D FixP_N PF14715.1 gi|312137006|ref|YP_004004343.1| - 0.11 11.9 4.6 0.77 9.2 0.2 3.0 3 0 0 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP MtrE PF04206.7 gi|312137007|ref|YP_004004344.1| - 2.5e-129 430.0 14.9 2.9e-129 429.8 10.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E RseC_MucC PF04246.7 gi|312137007|ref|YP_004004344.1| - 0.055 13.0 0.2 0.055 13.0 0.1 3.0 2 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC OppC_N PF12911.2 gi|312137007|ref|YP_004004344.1| - 1.2 8.5 0.0 1.2 8.5 0.0 3.4 4 1 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C MCR_alpha_N PF02745.10 gi|312137008|ref|YP_004004345.1| - 3.2e-163 541.2 0.1 4.3e-163 540.8 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|312137008|ref|YP_004004345.1| - 4.7e-67 223.7 3.0 9.3e-67 222.8 2.1 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.5 gi|312137008|ref|YP_004004345.1| - 0.006 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 BofC C-terminal domain Lipoprotein_3 PF00938.12 gi|312137008|ref|YP_004004345.1| - 0.038 13.7 0.3 0.068 12.9 0.2 1.4 1 0 0 1 1 1 0 Lipoprotein VHP PF02209.14 gi|312137008|ref|YP_004004345.1| - 0.41 10.3 3.0 0.97 9.1 2.1 1.7 1 0 0 1 1 1 0 Villin headpiece domain MCR_gamma PF02240.11 gi|312137009|ref|YP_004004346.1| - 3.9e-147 488.0 1.5 4.4e-147 487.8 1.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|312137010|ref|YP_004004347.1| - 6.2e-45 153.0 6.2 8.1e-40 136.3 4.3 3.2 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|312137011|ref|YP_004004348.1| - 1.8e-58 196.4 1.5 2.7e-58 195.8 1.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|312137012|ref|YP_004004349.1| - 1.1e-152 506.5 5.1 1.4e-152 506.1 3.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|312137012|ref|YP_004004349.1| - 1.5e-88 295.0 2.5 2.6e-88 294.2 1.7 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF512 PF04459.7 gi|312137013|ref|YP_004004350.1| - 9.5e-30 103.1 0.0 1.4e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|312137013|ref|YP_004004350.1| - 5.1e-14 52.7 0.8 7.1e-13 49.0 0.4 2.5 1 1 1 2 2 2 1 Radical SAM superfamily Tnp_zf-ribbon_2 PF13842.1 gi|312137013|ref|YP_004004350.1| - 0.35 11.3 9.1 1.4 9.3 6.4 2.0 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Radical_SAM PF04055.16 gi|312137014|ref|YP_004004351.1| - 2.6e-34 118.7 1.7 5.5e-33 114.4 0.1 2.8 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.14 gi|312137014|ref|YP_004004351.1| - 1.1e-05 25.3 0.0 0.00012 21.9 0.0 2.7 2 1 0 2 2 2 1 B12 binding domain Cation_efflux PF01545.16 gi|312137015|ref|YP_004004352.1| - 5.6e-69 232.3 4.5 7e-69 232.0 3.1 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|312137015|ref|YP_004004352.1| - 1.5e-08 34.5 0.1 3.3e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.4 gi|312137016|ref|YP_004004353.1| - 1.6e-33 114.4 1.1 3.1e-33 113.5 0.8 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|312137016|ref|YP_004004353.1| - 1.9e-22 79.6 0.1 2.9e-22 79.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|312137016|ref|YP_004004353.1| - 3.7e-07 30.1 0.0 6e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|312137016|ref|YP_004004353.1| - 0.00014 21.0 5.7 0.00079 18.5 0.3 2.8 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|312137016|ref|YP_004004353.1| - 0.00015 20.9 0.0 0.00026 20.1 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|312137016|ref|YP_004004353.1| - 0.00031 20.0 0.7 0.027 13.6 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|312137016|ref|YP_004004353.1| - 0.0015 18.1 0.4 0.023 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|312137016|ref|YP_004004353.1| - 0.0031 16.7 0.5 0.0039 16.3 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|312137016|ref|YP_004004353.1| - 0.0059 17.4 0.1 0.081 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|312137016|ref|YP_004004353.1| - 0.046 13.4 0.2 2.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain Ribosomal_L4 PF00573.17 gi|312137016|ref|YP_004004353.1| - 0.052 12.9 0.0 0.084 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family AAA_25 PF13481.1 gi|312137016|ref|YP_004004353.1| - 0.065 12.6 0.2 0.15 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF1610 PF07754.6 gi|312137016|ref|YP_004004353.1| - 0.11 12.6 2.3 0.31 11.1 1.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) AAA_11 PF13086.1 gi|312137016|ref|YP_004004353.1| - 0.12 11.8 0.1 2.6 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zn_Tnp_IS1595 PF12760.2 gi|312137016|ref|YP_004004353.1| - 0.15 11.8 1.1 1.1 9.0 0.2 2.4 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Met_gamma_lyase PF06838.6 gi|312137016|ref|YP_004004353.1| - 0.17 10.1 1.0 0.35 9.1 0.7 1.4 1 0 0 1 1 1 0 Methionine gamma-lyase DUF134 PF02001.11 gi|312137017|ref|YP_004004354.1| - 1.1e-30 105.6 0.4 1.4e-30 105.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|312137017|ref|YP_004004354.1| - 7.2e-05 22.1 0.2 0.00011 21.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|312137017|ref|YP_004004354.1| - 0.00073 19.2 0.2 0.00093 18.9 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor DZR PF12773.2 gi|312137017|ref|YP_004004354.1| - 0.0011 18.6 0.3 0.0018 18.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon HTH_23 PF13384.1 gi|312137017|ref|YP_004004354.1| - 0.0021 17.6 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|312137017|ref|YP_004004354.1| - 0.0028 17.4 0.1 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|312137017|ref|YP_004004354.1| - 0.015 15.4 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|312137017|ref|YP_004004354.1| - 0.018 14.6 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain Lar_restr_allev PF14354.1 gi|312137017|ref|YP_004004354.1| - 0.021 15.0 0.6 0.12 12.6 0.2 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.11 gi|312137017|ref|YP_004004354.1| - 0.032 13.5 0.1 0.057 12.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3853 PF12964.2 gi|312137017|ref|YP_004004354.1| - 0.04 13.7 0.1 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) UPF0547 PF10571.4 gi|312137017|ref|YP_004004354.1| - 0.049 13.3 9.4 0.098 12.3 6.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HTH_3 PF01381.17 gi|312137017|ref|YP_004004354.1| - 0.05 13.4 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.1 gi|312137017|ref|YP_004004354.1| - 0.054 13.6 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HypA PF01155.14 gi|312137017|ref|YP_004004354.1| - 0.19 11.3 2.2 0.28 10.8 1.5 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2HC PF01530.13 gi|312137017|ref|YP_004004354.1| - 0.29 10.8 3.4 0.55 10.0 2.4 1.5 1 0 0 1 1 1 0 Zinc finger, C2HC type PhnA_Zn_Ribbon PF08274.7 gi|312137017|ref|YP_004004354.1| - 0.37 10.6 0.3 0.37 10.6 0.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C3HC4_3 PF13920.1 gi|312137017|ref|YP_004004354.1| - 0.66 9.6 4.9 1.2 8.8 3.4 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|312137017|ref|YP_004004354.1| - 0.84 9.4 9.0 1.6 8.6 1.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|312137017|ref|YP_004004354.1| - 1.4 8.5 5.8 2.5 7.6 4.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF3039 PF11238.3 gi|312137017|ref|YP_004004354.1| - 5.2 6.5 8.9 57 3.2 6.2 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) TFIIS_C PF01096.13 gi|312137017|ref|YP_004004354.1| - 8.5 6.1 7.6 2.6 7.7 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) dTMP_synthase PF02593.9 gi|312137018|ref|YP_004004355.1| - 1.8e-60 204.0 3.2 2e-60 203.8 2.2 1.0 1 0 0 1 1 1 1 Thymidylate synthase CbiM PF01891.11 gi|312137019|ref|YP_004004356.1| - 3.8e-63 212.8 23.7 4.3e-63 212.6 16.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region YlaH PF14036.1 gi|312137019|ref|YP_004004356.1| - 4 7.5 17.5 3.9 7.6 2.0 3.4 2 2 1 3 3 3 0 YlaH-like protein PDGLE PF13190.1 gi|312137020|ref|YP_004004357.1| - 9.1e-18 63.7 0.1 1.2e-17 63.3 0.1 1.2 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|312137020|ref|YP_004004357.1| - 0.012 15.0 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Yip1 domain OppC_N PF12911.2 gi|312137020|ref|YP_004004357.1| - 2.9 7.3 4.9 4.4 6.7 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CbiQ PF02361.11 gi|312137021|ref|YP_004004358.1| - 2.6e-44 151.4 11.4 4e-44 150.8 7.9 1.2 1 0 0 1 1 1 1 Cobalt transport protein MutS_V PF00488.16 gi|312137023|ref|YP_004004360.1| - 1.3e-13 50.9 0.1 2.5e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|312137023|ref|YP_004004360.1| - 3.4e-06 27.1 2.4 3.4e-06 27.1 1.6 2.9 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|312137023|ref|YP_004004360.1| - 9.1e-06 25.0 2.6 0.14 11.9 0.4 3.2 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|312137023|ref|YP_004004360.1| - 4e-05 23.4 0.9 0.0057 16.5 0.6 3.3 1 1 1 2 2 2 2 Helix-hairpin-helix motif AAA_14 PF13173.1 gi|312137023|ref|YP_004004360.1| - 5.2e-05 23.1 1.2 0.00023 21.0 0.0 2.7 2 2 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|312137023|ref|YP_004004360.1| - 0.00011 22.1 0.0 0.00021 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|312137023|ref|YP_004004360.1| - 0.0011 18.4 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|312137023|ref|YP_004004360.1| - 0.0041 17.3 0.2 0.0041 17.3 0.2 4.7 5 1 0 5 5 5 1 ATPase family associated with various cellular activities (AAA) HHH_2 PF12826.2 gi|312137023|ref|YP_004004360.1| - 0.0056 16.5 3.7 0.043 13.6 0.3 3.1 2 1 1 3 3 3 2 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|312137023|ref|YP_004004360.1| - 0.014 15.5 0.3 0.14 12.2 0.1 2.8 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|312137023|ref|YP_004004360.1| - 0.037 14.0 0.1 0.43 10.5 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain HHH_8 PF14716.1 gi|312137023|ref|YP_004004360.1| - 0.048 13.8 1.5 0.15 12.2 0.2 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix domain AAA_21 PF13304.1 gi|312137023|ref|YP_004004360.1| - 0.049 13.5 0.1 0.049 13.5 0.1 4.4 2 2 2 4 4 2 0 AAA domain HHH_6 PF14579.1 gi|312137023|ref|YP_004004360.1| - 0.35 10.9 5.6 0.62 10.1 0.1 3.6 3 1 1 4 4 4 0 Helix-hairpin-helix motif Thymidylate_kin PF02223.12 gi|312137024|ref|YP_004004361.1| - 3.4e-54 183.0 0.7 3.8e-54 182.8 0.5 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.14 gi|312137024|ref|YP_004004361.1| - 1e-05 25.4 1.4 0.00016 21.5 1.0 2.1 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|312137024|ref|YP_004004361.1| - 3.3e-05 24.2 2.4 4.6e-05 23.7 0.9 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|312137024|ref|YP_004004361.1| - 8.2e-05 22.6 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|312137024|ref|YP_004004361.1| - 0.00014 21.7 2.2 0.0018 18.1 0.1 2.5 2 1 0 2 2 2 1 Shikimate kinase AAA_17 PF13207.1 gi|312137024|ref|YP_004004361.1| - 0.00065 20.5 1.6 0.0028 18.4 1.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|312137024|ref|YP_004004361.1| - 0.00069 19.5 0.0 0.0025 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain PPK2 PF03976.9 gi|312137024|ref|YP_004004361.1| - 0.00088 18.6 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) TIR_2 PF13676.1 gi|312137024|ref|YP_004004361.1| - 0.002 18.2 0.0 2.2 8.4 0.0 2.3 1 1 1 2 2 2 2 TIR domain AAA PF00004.24 gi|312137024|ref|YP_004004361.1| - 0.022 14.9 2.7 0.61 10.2 1.9 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|312137024|ref|YP_004004361.1| - 0.028 13.3 0.1 0.048 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Peptidase_C14 PF00656.17 gi|312137024|ref|YP_004004361.1| - 0.035 13.7 0.0 0.051 13.2 0.0 1.4 1 1 0 1 1 1 0 Caspase domain KTI12 PF08433.5 gi|312137024|ref|YP_004004361.1| - 0.049 12.8 4.3 1.2 8.2 0.2 2.7 2 1 0 2 2 2 0 Chromatin associated protein KTI12 Fer4_NifH PF00142.13 gi|312137024|ref|YP_004004361.1| - 0.13 11.4 1.8 3 6.9 0.2 2.1 1 1 1 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.1 gi|312137024|ref|YP_004004361.1| - 0.16 11.9 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Prefoldin_3 PF13758.1 gi|312137025|ref|YP_004004362.1| - 0.0058 16.3 0.0 0.0063 16.2 0.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit SHMT PF00464.14 gi|312137026|ref|YP_004004363.1| - 9.9e-85 284.3 0.0 1.3e-84 283.9 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|312137026|ref|YP_004004363.1| - 4.6e-12 45.5 0.0 2.1e-11 43.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|312137026|ref|YP_004004363.1| - 1.9e-07 30.5 0.0 4.7e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|312137026|ref|YP_004004363.1| - 3.9e-06 25.8 0.0 8.6e-06 24.7 0.0 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|312137026|ref|YP_004004363.1| - 6.2e-06 25.1 0.0 1.3e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|312137026|ref|YP_004004363.1| - 0.0055 15.7 0.1 0.0083 15.1 0.1 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|312137026|ref|YP_004004363.1| - 0.082 11.1 0.0 0.23 9.6 0.0 1.8 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Flavoprotein PF02441.14 gi|312137027|ref|YP_004004364.1| - 8e-22 77.2 0.0 1.1e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|312137027|ref|YP_004004364.1| - 1e-08 34.4 19.1 3.8e-08 32.6 2.5 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312137027|ref|YP_004004364.1| - 1.2e-08 34.5 24.5 2e-05 24.2 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312137027|ref|YP_004004364.1| - 1.6e-08 34.7 6.3 9.5e-06 25.9 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312137027|ref|YP_004004364.1| - 3.7e-07 29.7 15.5 5.4e-05 22.8 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|312137027|ref|YP_004004364.1| - 5e-07 29.2 12.1 6.1e-06 25.8 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312137027|ref|YP_004004364.1| - 9.7e-07 28.9 11.8 1.4e-05 25.2 1.3 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312137027|ref|YP_004004364.1| - 1.1e-06 28.4 2.4 0.00036 20.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312137027|ref|YP_004004364.1| - 8.8e-06 25.9 3.2 0.0018 18.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137027|ref|YP_004004364.1| - 4.8e-05 24.0 11.2 0.0011 19.6 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|312137027|ref|YP_004004364.1| - 0.00011 22.1 12.7 0.00025 21.1 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312137027|ref|YP_004004364.1| - 0.00057 19.6 8.9 0.011 15.5 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137027|ref|YP_004004364.1| - 0.00093 19.5 5.3 0.00093 19.5 3.6 3.0 3 1 0 3 3 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312137027|ref|YP_004004364.1| - 0.0025 18.1 7.1 0.0077 16.6 0.9 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312137027|ref|YP_004004364.1| - 0.0093 15.8 3.9 0.017 15.0 2.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312137027|ref|YP_004004364.1| - 0.091 13.3 0.4 0.091 13.3 0.3 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312137027|ref|YP_004004364.1| - 4.5 7.7 17.8 0.23 11.8 1.2 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF192 PF02643.10 gi|312137028|ref|YP_004004365.1| - 2.4e-18 65.7 0.0 3.1e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.6 gi|312137028|ref|YP_004004365.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) ArsA_ATPase PF02374.10 gi|312137029|ref|YP_004004366.1| - 3.4e-122 407.2 4.0 3.9e-122 407.0 2.8 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|312137029|ref|YP_004004366.1| - 2.9e-16 59.4 0.4 9e-16 57.8 0.3 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|312137029|ref|YP_004004366.1| - 2.6e-08 33.9 0.1 4.4e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|312137029|ref|YP_004004366.1| - 5.1e-06 25.8 0.1 1.5e-05 24.3 0.1 1.7 1 0 0 1 1 1 1 PhoH-like protein SRP54 PF00448.17 gi|312137029|ref|YP_004004366.1| - 7.7e-06 25.4 3.6 0.0017 17.8 0.3 2.6 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|312137029|ref|YP_004004366.1| - 9.2e-06 25.0 3.2 3.5e-05 23.1 0.0 2.8 2 1 1 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|312137029|ref|YP_004004366.1| - 1.3e-05 24.6 0.7 4.9e-05 22.8 0.2 2.1 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|312137029|ref|YP_004004366.1| - 0.00011 21.2 0.3 0.00011 21.2 0.2 1.8 2 0 0 2 2 2 1 NB-ARC domain YhjQ PF06564.7 gi|312137029|ref|YP_004004366.1| - 0.00013 21.4 0.0 0.0052 16.1 0.0 2.2 1 1 1 2 2 2 1 YhjQ protein ParA PF10609.4 gi|312137029|ref|YP_004004366.1| - 0.0019 18.0 0.3 0.012 15.5 0.1 2.4 2 0 0 2 2 2 1 ParA/MinD ATPase like AAA_10 PF12846.2 gi|312137029|ref|YP_004004366.1| - 0.0067 15.8 1.3 0.013 14.9 0.9 1.6 1 1 0 1 1 1 1 AAA-like domain Zeta_toxin PF06414.7 gi|312137029|ref|YP_004004366.1| - 0.019 14.0 1.0 0.047 12.7 0.0 2.1 3 0 0 3 3 3 0 Zeta toxin NTPase_1 PF03266.10 gi|312137029|ref|YP_004004366.1| - 0.023 14.3 0.0 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 NTPase KaiC PF06745.8 gi|312137029|ref|YP_004004366.1| - 0.044 12.8 2.4 0.047 12.7 0.4 2.1 2 1 0 2 2 2 0 KaiC T2SE PF00437.15 gi|312137029|ref|YP_004004366.1| - 0.066 12.1 0.1 0.15 10.8 0.1 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein MipZ PF09140.6 gi|312137029|ref|YP_004004366.1| - 0.077 12.0 1.0 1 8.3 0.1 2.4 1 1 0 2 2 2 0 ATPase MipZ ATP_bind_1 PF03029.12 gi|312137029|ref|YP_004004366.1| - 0.09 12.2 2.9 0.29 10.6 0.1 2.5 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein PIF1 PF05970.9 gi|312137029|ref|YP_004004366.1| - 0.1 11.5 5.2 0.11 11.3 0.1 2.1 2 0 0 2 2 2 0 PIF1-like helicase IstB_IS21 PF01695.12 gi|312137029|ref|YP_004004366.1| - 0.1 11.9 0.1 0.23 10.8 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ArgK PF03308.11 gi|312137029|ref|YP_004004366.1| - 0.11 11.2 0.1 0.11 11.2 0.1 1.9 3 0 0 3 3 3 0 ArgK protein DUF815 PF05673.8 gi|312137029|ref|YP_004004366.1| - 0.16 10.8 1.1 13 4.5 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF815) eIF3_N PF09440.5 gi|312137029|ref|YP_004004366.1| - 0.29 11.2 3.8 0.14 12.3 0.4 2.0 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain AAA_18 PF13238.1 gi|312137029|ref|YP_004004366.1| - 3.4 7.9 8.1 0.29 11.4 0.2 2.8 2 2 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|312137029|ref|YP_004004366.1| - 4.6 8.0 5.8 29 5.5 4.0 2.5 1 1 0 1 1 1 0 AAA domain Polysacc_synt PF01943.12 gi|312137030|ref|YP_004004367.1| - 7.5e-52 176.2 42.9 7.5e-52 176.2 29.7 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|312137030|ref|YP_004004367.1| - 9.9e-20 70.8 26.3 9.9e-20 70.8 18.2 3.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|312137030|ref|YP_004004367.1| - 3.2e-11 43.1 26.3 3.2e-11 43.1 18.2 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|312137030|ref|YP_004004367.1| - 5.8e-09 34.8 51.2 5.8e-09 34.8 35.5 1.8 1 1 1 2 2 2 1 MviN-like protein MatE PF01554.13 gi|312137030|ref|YP_004004367.1| - 3.7e-07 29.9 15.5 3.7e-07 29.9 10.8 4.5 3 2 0 3 3 3 2 MatE UDPG_MGDP_dh_N PF03721.9 gi|312137031|ref|YP_004004368.1| - 3.4e-64 215.6 0.1 1.7e-63 213.3 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|312137031|ref|YP_004004368.1| - 1.1e-38 131.5 0.1 6e-35 119.5 0.0 3.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|312137031|ref|YP_004004368.1| - 7.1e-34 115.9 0.5 1.6e-33 114.7 0.0 1.9 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain F420_oxidored PF03807.12 gi|312137031|ref|YP_004004368.1| - 1.2e-09 38.4 0.0 4.1e-06 27.1 0.0 3.6 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|312137031|ref|YP_004004368.1| - 3.6e-07 30.1 0.0 7.8e-06 25.8 0.0 2.7 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|312137031|ref|YP_004004368.1| - 9.8e-06 25.3 0.0 0.00017 21.3 0.0 2.6 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|312137031|ref|YP_004004368.1| - 2.7e-05 24.4 0.2 0.023 15.0 0.0 3.8 4 1 0 5 5 5 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|312137031|ref|YP_004004368.1| - 5.5e-05 22.8 0.0 0.00015 21.5 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|312137031|ref|YP_004004368.1| - 7.5e-05 22.2 0.0 0.0013 18.1 0.0 2.4 1 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|312137031|ref|YP_004004368.1| - 0.00018 20.7 0.2 0.0028 16.8 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|312137031|ref|YP_004004368.1| - 0.0039 16.7 0.0 0.016 14.7 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|312137031|ref|YP_004004368.1| - 0.0046 17.1 0.0 0.68 10.2 0.0 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding OTCace PF00185.19 gi|312137031|ref|YP_004004368.1| - 0.006 16.4 0.0 0.15 11.9 0.0 3.0 3 1 1 4 4 4 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Semialdhyde_dh PF01118.19 gi|312137031|ref|YP_004004368.1| - 0.0084 16.4 0.0 0.35 11.1 0.0 2.7 3 0 0 3 3 2 1 Semialdehyde dehydrogenase, NAD binding domain N6_N4_Mtase PF01555.13 gi|312137031|ref|YP_004004368.1| - 0.047 13.1 2.3 0.032 13.6 0.3 1.7 2 0 0 2 2 2 0 DNA methylase Ldh_1_N PF00056.18 gi|312137031|ref|YP_004004368.1| - 0.051 13.4 0.0 0.91 9.3 0.0 2.5 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.19 gi|312137031|ref|YP_004004368.1| - 0.072 11.9 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|312137031|ref|YP_004004368.1| - 0.11 12.4 0.1 6 6.8 0.0 3.5 4 1 0 4 4 3 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|312137031|ref|YP_004004368.1| - 0.17 10.9 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Epimerase PF01370.16 gi|312137032|ref|YP_004004369.1| - 2.7e-48 164.4 0.0 3.2e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|312137032|ref|YP_004004369.1| - 2.4e-11 43.0 0.0 3e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|312137032|ref|YP_004004369.1| - 2.5e-10 39.7 0.0 5.5e-06 25.4 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|312137032|ref|YP_004004369.1| - 1.4e-07 30.5 0.0 1.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|312137032|ref|YP_004004369.1| - 9.3e-07 28.0 0.0 0.0017 17.3 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|312137032|ref|YP_004004369.1| - 0.00018 21.5 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|312137032|ref|YP_004004369.1| - 0.0078 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.20 gi|312137032|ref|YP_004004369.1| - 0.024 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|312137032|ref|YP_004004369.1| - 0.16 11.3 0.1 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glycos_transf_2 PF00535.21 gi|312137033|ref|YP_004004370.1| - 3.4e-08 33.3 0.2 5.1e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137033|ref|YP_004004370.1| - 0.00044 20.1 0.0 0.00059 19.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Mtc PF03820.12 gi|312137033|ref|YP_004004370.1| - 0.0079 14.8 0.0 0.012 14.3 0.0 1.1 1 0 0 1 1 1 1 Tricarboxylate carrier Epimerase PF01370.16 gi|312137034|ref|YP_004004371.1| - 1.9e-61 207.5 0.0 2.4e-61 207.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|312137034|ref|YP_004004371.1| - 1.5e-23 82.9 0.1 2e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|312137034|ref|YP_004004371.1| - 6.5e-20 71.2 0.7 8e-19 67.6 0.5 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|312137034|ref|YP_004004371.1| - 1.4e-15 56.9 0.0 2e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|312137034|ref|YP_004004371.1| - 1.8e-10 40.1 0.1 7.7e-08 31.5 0.1 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|312137034|ref|YP_004004371.1| - 9.7e-09 35.4 0.0 1.1e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|312137034|ref|YP_004004371.1| - 4.9e-05 23.3 0.1 0.00057 19.8 0.1 2.3 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|312137034|ref|YP_004004371.1| - 0.00057 19.8 0.3 0.0011 18.9 0.2 1.6 1 1 0 1 1 1 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|312137034|ref|YP_004004371.1| - 0.0015 18.4 0.0 0.0063 16.4 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose 4-epimerase C-term subunit DUF1188 PF06690.6 gi|312137034|ref|YP_004004371.1| - 0.0071 15.5 0.1 0.012 14.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) UDPG_MGDP_dh_N PF03721.9 gi|312137034|ref|YP_004004371.1| - 0.027 13.8 0.4 0.089 12.1 0.2 1.7 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|312137034|ref|YP_004004371.1| - 0.031 14.1 0.5 0.056 13.2 0.0 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain KR PF08659.5 gi|312137034|ref|YP_004004371.1| - 0.17 11.5 0.1 0.48 10.0 0.0 1.6 1 1 0 2 2 2 0 KR domain MTD PF01993.13 gi|312137035|ref|YP_004004372.1| - 1.2e-145 483.6 7.7 1.4e-145 483.5 5.4 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF364 PF04016.7 gi|312137035|ref|YP_004004372.1| - 0.032 13.5 0.0 0.58 9.4 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF364) Radical_SAM PF04055.16 gi|312137036|ref|YP_004004373.1| - 2.8e-21 76.4 2.8 6.7e-19 68.6 1.9 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|312137036|ref|YP_004004373.1| - 0.0038 17.2 3.4 0.13 12.3 1.6 2.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain PSDC PF12588.3 gi|312137036|ref|YP_004004373.1| - 0.0044 16.6 0.1 0.0066 16.0 0.1 1.3 1 0 0 1 1 1 1 Phophatidylserine decarboxylase Fer4_12 PF13353.1 gi|312137036|ref|YP_004004373.1| - 1.7 8.7 7.3 45 4.1 3.5 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain Peptidase_M42 PF05343.9 gi|312137037|ref|YP_004004374.1| - 2.9e-111 370.9 3.7 3.3e-111 370.7 2.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|312137037|ref|YP_004004374.1| - 4.2e-08 32.9 0.0 7.4e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Abi_HHR PF07815.9 gi|312137037|ref|YP_004004374.1| - 0.01 15.9 0.3 6.5 6.9 0.0 2.6 2 0 0 2 2 2 0 Abl-interactor HHR Peptidase_M28 PF04389.12 gi|312137037|ref|YP_004004374.1| - 0.032 13.9 0.0 0.57 9.9 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M28 DUF1441 PF07278.6 gi|312137037|ref|YP_004004374.1| - 0.081 12.5 0.1 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1441) EnY2 PF10163.4 gi|312137037|ref|YP_004004374.1| - 0.086 12.7 0.2 0.72 9.8 0.0 2.2 2 0 0 2 2 2 0 Transcription factor e(y)2 DUF1476 PF07345.6 gi|312137037|ref|YP_004004374.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1476) Flavoprotein PF02441.14 gi|312137038|ref|YP_004004375.1| - 8.9e-20 70.6 0.0 1.4e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein DUF104 PF01954.11 gi|312137038|ref|YP_004004375.1| - 0.038 14.0 3.2 0.1 12.6 0.2 2.8 2 2 1 3 3 3 0 Protein of unknown function DUF104 TPR_11 PF13414.1 gi|312137039|ref|YP_004004376.1| - 1.8e-61 203.6 23.9 4.8e-21 74.1 0.2 4.1 1 1 4 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|312137039|ref|YP_004004376.1| - 6.6e-55 180.6 18.7 3.4e-13 48.5 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|312137039|ref|YP_004004376.1| - 1.4e-50 165.2 10.7 2.1e-09 36.5 0.0 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|312137039|ref|YP_004004376.1| - 1.4e-37 124.6 20.4 2.8e-08 32.9 0.0 6.1 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|312137039|ref|YP_004004376.1| - 1.5e-33 114.5 5.6 2.3e-11 43.4 0.3 3.7 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|312137039|ref|YP_004004376.1| - 1.7e-33 114.5 0.0 6.3e-08 33.0 0.0 4.3 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|312137039|ref|YP_004004376.1| - 7.2e-33 110.0 10.7 3.3e-08 33.0 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|312137039|ref|YP_004004376.1| - 8.4e-28 96.3 17.7 9.4e-09 35.2 0.2 3.2 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|312137039|ref|YP_004004376.1| - 1.2e-26 90.2 0.5 0.00018 21.0 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|312137039|ref|YP_004004376.1| - 3.7e-25 86.1 0.0 0.0034 17.8 0.0 6.1 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|312137039|ref|YP_004004376.1| - 2e-24 85.6 0.1 7.1e-07 29.4 0.0 4.0 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|312137039|ref|YP_004004376.1| - 2.9e-20 71.2 1.2 0.011 16.1 0.0 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|312137039|ref|YP_004004376.1| - 3.5e-18 65.2 0.0 1.2e-07 31.5 0.0 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|312137039|ref|YP_004004376.1| - 5e-18 64.3 0.9 0.029 14.3 0.0 6.1 5 1 1 6 6 6 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|312137039|ref|YP_004004376.1| - 2.1e-17 62.7 8.0 0.0011 18.8 0.2 6.1 6 0 0 6 6 6 5 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|312137039|ref|YP_004004376.1| - 1.3e-09 37.3 1.0 0.00023 20.0 0.0 3.2 1 1 4 5 5 5 4 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|312137039|ref|YP_004004376.1| - 4.2e-09 36.3 1.1 0.059 13.1 0.1 5.4 1 1 4 5 5 5 4 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|312137039|ref|YP_004004376.1| - 1.2e-07 31.5 12.0 0.006 16.4 1.0 5.4 4 2 0 4 4 4 2 MIT (microtubule interacting and transport) domain Coatomer_E PF04733.9 gi|312137039|ref|YP_004004376.1| - 2.5e-07 30.1 0.4 0.0021 17.2 0.0 3.4 1 1 3 4 4 4 1 Coatomer epsilon subunit TPR_5 PF12688.2 gi|312137039|ref|YP_004004376.1| - 4e-07 30.0 0.0 0.37 10.8 0.0 3.7 1 1 3 4 4 4 3 Tetratrico peptide repeat TPR_20 PF14561.1 gi|312137039|ref|YP_004004376.1| - 8.2e-06 25.8 0.0 6.3 6.9 0.0 4.3 1 1 2 4 4 4 0 Tetratricopeptide repeat PPR PF01535.15 gi|312137039|ref|YP_004004376.1| - 1.2e-05 24.9 9.1 3.7 7.7 0.1 6.3 6 0 0 6 6 6 1 PPR repeat TPR_3 PF07720.7 gi|312137039|ref|YP_004004376.1| - 5.8e-05 22.7 2.3 2.2 8.1 0.0 5.4 6 0 0 6 6 6 1 Tetratricopeptide repeat SPOB_a PF14689.1 gi|312137039|ref|YP_004004376.1| - 6.2e-05 22.4 1.5 3.7 7.2 0.0 4.5 5 0 0 5 5 4 1 Sensor_kinase_SpoOB-type, alpha-helical domain Rapsyn_N PF10579.4 gi|312137039|ref|YP_004004376.1| - 6.5e-05 22.6 0.0 0.36 10.6 0.0 3.7 3 2 1 4 4 4 1 Rapsyn N-terminal myristoylation and linker region TPR_15 PF13429.1 gi|312137039|ref|YP_004004376.1| - 0.00019 20.5 0.0 4.8 6.1 0.0 4.2 1 1 4 5 5 5 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|312137039|ref|YP_004004376.1| - 0.00058 19.6 1.4 3.2 7.6 0.1 4.3 4 1 1 5 5 4 1 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|312137039|ref|YP_004004376.1| - 0.0011 19.1 0.0 23 5.7 0.0 4.5 5 0 0 5 5 4 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|312137039|ref|YP_004004376.1| - 0.0014 18.0 2.0 18 4.6 0.0 4.9 3 1 3 6 6 6 0 26S proteasome subunit RPN7 ChAPs PF09295.5 gi|312137039|ref|YP_004004376.1| - 0.0034 16.2 0.0 0.0071 15.1 0.0 1.3 1 1 0 1 1 1 1 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.1 gi|312137039|ref|YP_004004376.1| - 0.0049 17.1 0.0 4.8 7.4 0.0 3.3 1 1 2 4 4 4 0 Alkyl sulfatase dimerisation PPR_2 PF13041.1 gi|312137039|ref|YP_004004376.1| - 0.017 15.0 2.1 16 5.5 0.0 4.3 4 1 1 5 5 4 0 PPR repeat family SNAP PF14938.1 gi|312137039|ref|YP_004004376.1| - 0.024 13.7 1.7 0.67 9.0 0.3 3.1 1 1 2 3 3 3 0 Soluble NSF attachment protein, SNAP DUF3808 PF10300.4 gi|312137039|ref|YP_004004376.1| - 0.07 11.6 0.1 1.1 7.7 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3808) SPO22 PF08631.5 gi|312137039|ref|YP_004004376.1| - 0.071 12.1 2.2 6.3 5.7 0.0 3.8 2 1 1 4 4 4 0 Meiosis protein SPO22/ZIP4 like CMD PF02627.15 gi|312137040|ref|YP_004004377.1| - 3.9e-12 45.8 0.0 4.5e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Histone_HNS PF00816.16 gi|312137040|ref|YP_004004377.1| - 0.13 12.7 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 H-NS histone family Ribosomal_L15e PF00827.12 gi|312137041|ref|YP_004004378.1| - 6.5e-85 283.4 11.3 7.2e-85 283.3 7.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 Pilt PF15453.1 gi|312137041|ref|YP_004004378.1| - 0.028 14.1 0.9 0.036 13.7 0.7 1.1 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions RNA_binding PF01877.12 gi|312137042|ref|YP_004004379.1| - 1.9e-30 105.3 4.8 2.5e-30 104.9 3.3 1.1 1 0 0 1 1 1 1 RNA binding DUF4546 PF15079.1 gi|312137042|ref|YP_004004379.1| - 0.032 13.3 2.2 0.036 13.2 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4546) Ig_J_chain PF15097.1 gi|312137042|ref|YP_004004379.1| - 0.066 12.8 0.1 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 Immunoglobulin J chain CENP-Q PF13094.1 gi|312137042|ref|YP_004004379.1| - 0.18 11.8 1.3 0.34 10.9 0.9 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit RNase_P_p30 PF01876.11 gi|312137043|ref|YP_004004380.1| - 1.8e-37 127.9 0.1 2.9e-37 127.2 0.0 1.4 1 1 0 1 1 1 1 RNase P subunit p30 Gsf2 PF11055.3 gi|312137043|ref|YP_004004380.1| - 0.052 12.0 0.0 0.084 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucose signalling factor 2 RNase_P_Rpp14 PF01900.14 gi|312137044|ref|YP_004004381.1| - 3.2e-24 84.8 0.1 3.8e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|312137045|ref|YP_004004382.1| - 1.5e-62 210.2 0.1 2e-62 209.8 0.1 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|312137045|ref|YP_004004382.1| - 4e-15 54.8 0.4 1.2e-14 53.2 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|312137046|ref|YP_004004383.1| - 1.1e-26 92.4 0.7 1.8e-26 91.7 0.5 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|312137046|ref|YP_004004383.1| - 2.9e-23 81.9 0.0 4.4e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Duffy_binding PF05424.6 gi|312137046|ref|YP_004004383.1| - 0.22 11.3 6.2 0.55 10.0 0.4 2.5 2 1 1 3 3 3 0 Duffy binding domain ECR1_N PF14382.1 gi|312137047|ref|YP_004004384.1| - 3.5e-11 42.2 0.2 6.1e-11 41.4 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.24 gi|312137047|ref|YP_004004384.1| - 1.2e-10 40.8 0.4 4.5e-10 39.0 0.2 2.0 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|312137047|ref|YP_004004384.1| - 1.8e-07 31.1 1.6 4.4e-07 29.9 1.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|312137047|ref|YP_004004384.1| - 2.3e-05 23.9 0.7 6.8e-05 22.4 0.1 2.1 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|312137047|ref|YP_004004384.1| - 0.00023 20.6 0.6 0.00023 20.6 0.4 2.5 2 0 0 2 2 2 1 KH domain RNase_PH PF01138.16 gi|312137048|ref|YP_004004385.1| - 1.3e-38 132.2 0.1 2.8e-38 131.2 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|312137048|ref|YP_004004385.1| - 6.3e-17 61.2 0.7 1e-16 60.5 0.5 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 OsmC PF02566.14 gi|312137048|ref|YP_004004385.1| - 0.022 14.9 0.1 0.044 13.9 0.1 1.5 1 0 0 1 1 1 0 OsmC-like protein RNase_PH PF01138.16 gi|312137049|ref|YP_004004386.1| - 4.9e-34 117.4 0.0 1.2e-33 116.1 0.0 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|312137049|ref|YP_004004386.1| - 6.1e-15 54.9 0.5 1.3e-14 53.8 0.3 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|312137050|ref|YP_004004387.1| - 7.7e-36 121.8 5.4 8.9e-36 121.6 3.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|312137050|ref|YP_004004387.1| - 1.8e-05 24.4 2.5 2.3e-05 24.0 1.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|312137050|ref|YP_004004387.1| - 0.019 14.2 1.5 0.019 14.2 1.1 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2_4 PF13894.1 gi|312137050|ref|YP_004004387.1| - 0.02 15.1 1.5 1.9 8.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-BED PF02892.10 gi|312137050|ref|YP_004004387.1| - 0.031 14.0 5.1 0.11 12.2 0.3 2.2 1 1 1 2 2 2 0 BED zinc finger Rubredoxin PF00301.15 gi|312137050|ref|YP_004004387.1| - 0.039 13.8 0.7 8 6.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin DUF4379 PF14311.1 gi|312137050|ref|YP_004004387.1| - 0.04 13.7 2.6 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) OrfB_Zn_ribbon PF07282.6 gi|312137050|ref|YP_004004387.1| - 0.044 13.4 2.1 0.098 12.3 1.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|312137050|ref|YP_004004387.1| - 0.12 12.1 1.5 0.17 11.6 1.0 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2 PF00096.21 gi|312137050|ref|YP_004004387.1| - 0.15 12.4 1.6 5.2 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|312137050|ref|YP_004004387.1| - 0.16 11.9 2.6 7.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|312137050|ref|YP_004004387.1| - 0.18 12.1 2.7 4.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|312137050|ref|YP_004004387.1| - 0.2 10.9 1.0 0.45 9.8 0.7 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|312137050|ref|YP_004004387.1| - 0.25 10.6 2.3 5.6 6.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|312137050|ref|YP_004004387.1| - 0.77 9.3 2.9 6 6.5 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.1 gi|312137050|ref|YP_004004387.1| - 1.3 8.6 4.1 8.4 6.0 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|312137051|ref|YP_004004388.1| - 0.00016 21.2 4.4 0.0002 20.9 3.1 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|312137051|ref|YP_004004388.1| - 0.00026 20.7 1.0 0.0003 20.5 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|312137051|ref|YP_004004388.1| - 0.00026 20.3 6.7 0.00032 20.1 4.7 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.11 gi|312137051|ref|YP_004004388.1| - 0.003 17.1 9.4 0.17 11.5 2.3 2.1 2 0 0 2 2 2 2 HIT zinc finger HypA PF01155.14 gi|312137051|ref|YP_004004388.1| - 0.0045 16.6 0.4 0.0045 16.6 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|312137051|ref|YP_004004388.1| - 0.011 15.4 1.3 0.013 15.0 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|312137051|ref|YP_004004388.1| - 0.012 15.0 1.3 0.025 14.0 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain RNHCP PF12647.2 gi|312137051|ref|YP_004004388.1| - 0.013 15.3 0.2 0.014 15.2 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain NMD3 PF04981.8 gi|312137051|ref|YP_004004388.1| - 0.015 14.4 0.8 0.015 14.4 0.6 1.1 1 0 0 1 1 1 0 NMD3 family DUF1610 PF07754.6 gi|312137051|ref|YP_004004388.1| - 0.015 15.3 1.8 0.025 14.6 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Spt4 PF06093.8 gi|312137051|ref|YP_004004388.1| - 0.021 14.7 0.5 0.021 14.7 0.3 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Rubredoxin PF00301.15 gi|312137051|ref|YP_004004388.1| - 0.027 14.3 4.6 0.9 9.4 3.2 2.1 1 1 0 1 1 1 0 Rubredoxin C1_2 PF03107.11 gi|312137051|ref|YP_004004388.1| - 0.043 13.9 2.0 0.067 13.3 1.4 1.3 1 1 0 1 1 1 0 C1 domain NOB1_Zn_bind PF08772.6 gi|312137051|ref|YP_004004388.1| - 0.045 13.5 0.5 0.045 13.5 0.3 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc-ribbons_6 PF07191.7 gi|312137051|ref|YP_004004388.1| - 0.045 13.5 0.6 0.046 13.5 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbons PHD PF00628.24 gi|312137051|ref|YP_004004388.1| - 0.053 13.2 3.5 0.07 12.8 2.4 1.2 1 0 0 1 1 1 0 PHD-finger zinc_ribbon_5 PF13719.1 gi|312137051|ref|YP_004004388.1| - 0.062 12.9 1.1 3.6 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|312137051|ref|YP_004004388.1| - 0.079 12.6 1.3 4.4 7.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2197 PF09963.4 gi|312137051|ref|YP_004004388.1| - 0.08 12.9 5.8 0.15 12.0 1.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-ribbon_3 PF13248.1 gi|312137051|ref|YP_004004388.1| - 0.085 12.0 2.4 2.2 7.5 2.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|312137051|ref|YP_004004388.1| - 0.1 12.9 2.9 0.1 12.9 2.0 1.9 1 1 1 2 2 2 0 Zinc-finger double domain zf-C2HC5 PF06221.8 gi|312137051|ref|YP_004004388.1| - 0.1 12.3 0.5 0.12 12.0 0.3 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C4pol PF14260.1 gi|312137051|ref|YP_004004388.1| - 0.1 12.5 0.9 0.1 12.6 0.7 1.1 1 0 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta FYVE_2 PF02318.11 gi|312137051|ref|YP_004004388.1| - 0.13 12.1 0.8 0.13 12.1 0.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DUF2296 PF10058.4 gi|312137051|ref|YP_004004388.1| - 0.16 11.7 2.9 1.7 8.4 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C3HC4_4 PF15227.1 gi|312137051|ref|YP_004004388.1| - 0.17 11.7 1.9 0.21 11.4 1.3 1.2 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING A2L_zn_ribbon PF08792.5 gi|312137051|ref|YP_004004388.1| - 0.18 11.2 2.7 0.28 10.6 1.8 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|312137051|ref|YP_004004388.1| - 0.2 11.3 2.8 4.8 6.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C3HC4_3 PF13920.1 gi|312137051|ref|YP_004004388.1| - 0.26 11.0 2.3 0.33 10.6 1.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.7 gi|312137051|ref|YP_004004388.1| - 0.32 10.7 4.9 0.43 10.3 3.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|312137051|ref|YP_004004388.1| - 0.34 10.8 4.5 1.9 8.4 3.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain C1_3 PF07649.7 gi|312137051|ref|YP_004004388.1| - 0.4 10.7 2.6 0.79 9.8 1.8 1.5 1 1 0 1 1 1 0 C1-like domain TF_Zn_Ribbon PF08271.7 gi|312137051|ref|YP_004004388.1| - 0.51 9.6 4.6 1.2 8.4 3.2 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|312137051|ref|YP_004004388.1| - 0.76 9.6 6.0 1.2 8.9 4.1 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|312137051|ref|YP_004004388.1| - 2.3 8.6 8.2 8.4 6.8 5.7 1.8 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Brix PF04427.13 gi|312137052|ref|YP_004004389.1| - 9.4e-09 35.1 0.0 1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|312137053|ref|YP_004004390.1| - 1.9e-14 53.4 0.1 2.3e-14 53.1 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|312137054|ref|YP_004004391.1| - 1.2e-27 95.7 20.1 1.4e-27 95.5 13.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Cortex-I_coil PF09304.5 gi|312137054|ref|YP_004004391.1| - 0.011 15.7 20.1 0.017 15.1 4.8 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil MEDS PF14417.1 gi|312137054|ref|YP_004004391.1| - 0.046 12.7 2.2 0.067 12.2 1.5 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain LRR_8 PF13855.1 gi|312137054|ref|YP_004004391.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Leucine rich repeat Nucleo_P87 PF07267.6 gi|312137054|ref|YP_004004391.1| - 0.13 10.9 5.2 0.14 10.7 3.6 1.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 DUF424 PF04242.8 gi|312137054|ref|YP_004004391.1| - 0.13 12.2 1.9 2.7 8.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF424) DUF1464 PF07318.7 gi|312137054|ref|YP_004004391.1| - 0.15 10.8 0.9 0.18 10.5 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) ISG65-75 PF11727.3 gi|312137054|ref|YP_004004391.1| - 0.15 11.0 6.5 0.16 11.0 4.5 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF87 PF01935.12 gi|312137054|ref|YP_004004391.1| - 0.25 11.1 7.6 0.31 10.8 5.3 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 Prefoldin PF02996.12 gi|312137054|ref|YP_004004391.1| - 0.61 9.7 15.7 0.42 10.2 2.0 2.4 1 1 0 2 2 2 0 Prefoldin subunit DUF4164 PF13747.1 gi|312137054|ref|YP_004004391.1| - 0.84 9.8 13.6 1 9.5 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Cas_Cas1 PF01867.11 gi|312137054|ref|YP_004004391.1| - 0.9 8.5 6.8 1.1 8.3 4.7 1.3 1 0 0 1 1 1 0 CRISPR associated protein Cas1 Occludin_ELL PF07303.8 gi|312137054|ref|YP_004004391.1| - 0.93 10.2 10.5 0.56 10.9 5.2 1.8 1 1 1 2 2 2 0 Occludin homology domain WXG100 PF06013.7 gi|312137054|ref|YP_004004391.1| - 0.97 9.4 10.7 3.3 7.7 3.2 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Rotamase PF00639.16 gi|312137054|ref|YP_004004391.1| - 1.5 9.5 6.1 0.95 10.2 2.4 1.8 1 1 1 2 2 2 0 PPIC-type PPIASE domain Laminin_II PF06009.7 gi|312137054|ref|YP_004004391.1| - 1.8 8.2 12.7 22 4.8 8.6 2.0 1 1 0 1 1 1 0 Laminin Domain II Mo25 PF08569.6 gi|312137054|ref|YP_004004391.1| - 2 7.3 9.2 1.8 7.5 2.3 2.0 1 1 1 2 2 2 0 Mo25-like IFT57 PF10498.4 gi|312137054|ref|YP_004004391.1| - 2.1 7.0 18.5 1 8.0 3.6 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF2968 PF11180.3 gi|312137054|ref|YP_004004391.1| - 2.4 7.5 17.9 1.3 8.4 6.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) TBPIP PF07106.8 gi|312137054|ref|YP_004004391.1| - 2.4 7.6 17.5 4.7 6.7 12.1 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GED PF02212.13 gi|312137054|ref|YP_004004391.1| - 2.8 7.9 12.9 1.1 9.2 1.7 2.3 2 1 0 2 2 2 0 Dynamin GTPase effector domain Phage_GP20 PF06810.6 gi|312137054|ref|YP_004004391.1| - 2.8 7.3 15.8 4.4 6.7 10.7 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 DUF3584 PF12128.3 gi|312137054|ref|YP_004004391.1| - 3.4 4.8 17.8 3.9 4.6 12.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Prominin PF05478.6 gi|312137054|ref|YP_004004391.1| - 3.5 5.0 7.6 5.1 4.4 5.3 1.3 1 0 0 1 1 1 0 Prominin DUF4407 PF14362.1 gi|312137054|ref|YP_004004391.1| - 4 6.2 11.8 5.1 5.9 8.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Syntaxin-6_N PF09177.6 gi|312137054|ref|YP_004004391.1| - 5.2 7.5 10.3 2.5 8.5 1.7 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal APG6 PF04111.7 gi|312137054|ref|YP_004004391.1| - 7.4 5.5 18.7 40 3.1 13.0 1.8 1 1 0 1 1 1 0 Autophagy protein Apg6 AAA_13 PF13166.1 gi|312137054|ref|YP_004004391.1| - 7.4 4.8 12.7 9.6 4.5 8.8 1.2 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|312137054|ref|YP_004004391.1| - 7.5 4.8 12.5 9.6 4.4 8.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Borrelia_P83 PF05262.6 gi|312137054|ref|YP_004004391.1| - 9.7 4.3 14.9 11 4.1 10.3 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein DUF4200 PF13863.1 gi|312137054|ref|YP_004004391.1| - 10 6.1 23.5 3.9 7.4 6.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF2121 PF09894.4 gi|312137055|ref|YP_004004392.1| - 1.6e-61 207.0 10.2 1.6e-61 207.0 7.1 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) Proteasome PF00227.21 gi|312137055|ref|YP_004004392.1| - 0.0058 15.9 4.1 0.11 11.7 0.0 3.0 4 0 0 4 4 4 2 Proteasome subunit DUF424 PF04242.8 gi|312137055|ref|YP_004004392.1| - 0.12 12.3 1.5 1.3 9.1 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF424) CH PF00307.26 gi|312137055|ref|YP_004004392.1| - 0.14 12.1 0.9 1.1 9.3 0.6 2.5 1 1 0 1 1 1 0 Calponin homology (CH) domain Lactamase_B_2 PF12706.2 gi|312137056|ref|YP_004004393.1| - 2.8e-22 79.2 0.2 3.4e-22 78.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|312137056|ref|YP_004004393.1| - 8e-15 54.9 0.1 1.1e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|312137056|ref|YP_004004393.1| - 3.8e-07 29.9 1.5 1.2e-06 28.3 1.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Chorismate_synt PF01264.16 gi|312137057|ref|YP_004004394.1| - 1.4e-148 494.0 0.8 1.6e-148 493.8 0.6 1.0 1 0 0 1 1 1 1 Chorismate synthase TP_methylase PF00590.15 gi|312137058|ref|YP_004004395.1| - 8.3e-52 175.9 0.1 9.6e-52 175.7 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|312137058|ref|YP_004004395.1| - 0.00023 21.4 0.9 0.00082 19.5 0.5 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Orn_Arg_deC_N PF02784.11 gi|312137058|ref|YP_004004395.1| - 0.1 11.7 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DUF131 PF01998.12 gi|312137059|ref|YP_004004396.1| - 1.2e-20 72.6 10.3 1.2e-20 72.6 7.1 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF973 PF06157.6 gi|312137059|ref|YP_004004396.1| - 0.033 13.1 18.7 0.16 10.9 12.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Pox_A14 PF05767.7 gi|312137059|ref|YP_004004396.1| - 0.24 11.3 8.6 1.6 8.7 0.4 2.2 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF2976 PF11190.3 gi|312137059|ref|YP_004004396.1| - 0.49 9.9 12.4 13 5.4 8.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) DUF106 PF01956.11 gi|312137059|ref|YP_004004396.1| - 1.1 8.7 3.5 1.2 8.6 0.1 1.9 1 1 1 2 2 2 0 Integral membrane protein DUF106 DUF898 PF05987.8 gi|312137059|ref|YP_004004396.1| - 1.7 7.4 6.0 2 7.2 4.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF4418 PF14387.1 gi|312137059|ref|YP_004004396.1| - 3.5 7.3 10.3 1.9e+02 1.8 7.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) PEMT PF04191.8 gi|312137059|ref|YP_004004396.1| - 4.4 7.4 6.6 1.4 9.0 0.2 2.1 1 1 1 2 2 2 0 Phospholipid methyltransferase Form-deh_trans PF09163.6 gi|312137059|ref|YP_004004396.1| - 4.8 6.7 6.3 6.8 6.2 0.3 2.5 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane COX2_TM PF02790.10 gi|312137059|ref|YP_004004396.1| - 5 7.1 6.7 15 5.5 0.2 2.1 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain DUF1049 PF06305.6 gi|312137059|ref|YP_004004396.1| - 5.1 6.6 6.4 10 5.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3040 PF11239.3 gi|312137059|ref|YP_004004396.1| - 6.7 6.8 15.5 0.89 9.6 3.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3040) MCR_C PF04609.7 gi|312137060|ref|YP_004004397.1| - 1.4e-10 40.4 0.2 2.2e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF3410 PF11890.3 gi|312137060|ref|YP_004004397.1| - 0.048 13.3 0.1 2.2 7.9 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3410) Zn_dep_PLPC PF00882.13 gi|312137061|ref|YP_004004398.1| - 8e-18 64.6 0.4 1.1e-17 64.2 0.3 1.1 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|312137061|ref|YP_004004398.1| - 0.089 12.0 0.0 2.5 7.3 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) SBP_bac_11 PF13531.1 gi|312137062|ref|YP_004004399.1| - 1.1e-55 188.7 0.0 1.3e-55 188.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|312137062|ref|YP_004004399.1| - 8.9e-10 38.7 2.5 2.4e-08 34.0 1.7 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|312137062|ref|YP_004004399.1| - 1.4e-09 37.7 0.0 1.8e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.2 gi|312137062|ref|YP_004004399.1| - 1.2e-08 34.1 0.1 2.1e-08 33.3 0.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|312137062|ref|YP_004004399.1| - 9.5e-08 32.1 4.2 0.00066 19.4 0.0 2.1 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein ABC2_membrane_3 PF12698.2 gi|312137062|ref|YP_004004399.1| - 0.00024 20.2 0.2 0.0012 17.9 0.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein SBP_bac_6 PF13343.1 gi|312137062|ref|YP_004004399.1| - 0.00029 20.2 0.8 0.022 14.1 0.2 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|312137062|ref|YP_004004399.1| - 0.00056 19.3 1.1 0.00081 18.8 0.7 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system HEM4 PF02602.10 gi|312137062|ref|YP_004004399.1| - 0.11 11.6 0.0 0.73 9.0 0.0 2.0 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD BPD_transp_1 PF00528.17 gi|312137063|ref|YP_004004400.1| - 1.9e-19 69.8 12.7 1.9e-19 69.8 8.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Radical_SAM PF04055.16 gi|312137064|ref|YP_004004401.1| - 5.5e-25 88.4 0.1 2.8e-24 86.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137064|ref|YP_004004401.1| - 1.6e-14 54.1 0.4 4.1e-14 52.8 0.1 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137064|ref|YP_004004401.1| - 3.9e-14 52.6 0.0 7.8e-14 51.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF771 PF05595.6 gi|312137064|ref|YP_004004401.1| - 0.28 11.1 2.9 0.5 10.3 0.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF771) CobN-Mg_chel PF02514.11 gi|312137065|ref|YP_004004402.1| - 0 1045.2 0.0 0 1045.0 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase TetR PF13972.1 gi|312137065|ref|YP_004004402.1| - 0.018 14.4 0.2 0.14 11.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial transcriptional repressor Epimerase_2 PF02350.14 gi|312137066|ref|YP_004004403.1| - 5.1e-06 25.4 0.1 4.1e-05 22.5 0.0 2.3 1 1 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Alg14 PF08660.6 gi|312137066|ref|YP_004004403.1| - 0.092 12.7 0.1 0.9 9.5 0.0 2.1 2 0 0 2 2 2 0 Oligosaccharide biosynthesis protein Alg14 like Glyco_tran_28_C PF04101.11 gi|312137066|ref|YP_004004403.1| - 0.12 12.0 0.2 0.19 11.3 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|312137066|ref|YP_004004403.1| - 0.14 11.3 0.0 3.7 6.6 0.0 2.3 2 1 0 2 2 2 0 Glycosyl transferase family 1 DUF70 PF01901.11 gi|312137067|ref|YP_004004404.1| - 9.9e-79 264.7 39.2 1.2e-78 264.5 27.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF70 O-ag_pol_Wzy PF14296.1 gi|312137067|ref|YP_004004404.1| - 0.00029 19.5 46.3 0.014 14.0 2.9 2.7 2 1 0 2 2 2 2 O-antigen polysaccharide polymerase Wzy 2-Hacid_dh_C PF02826.14 gi|312137068|ref|YP_004004405.1| - 1.2e-70 236.3 0.0 1.8e-70 235.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|312137068|ref|YP_004004405.1| - 8.6e-41 138.5 3.0 6.7e-40 135.6 0.4 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|312137068|ref|YP_004004405.1| - 2.4e-10 39.6 0.8 2.7e-09 36.3 0.0 2.9 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.10 gi|312137068|ref|YP_004004405.1| - 4.7e-06 26.5 0.9 1.3e-05 25.0 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|312137068|ref|YP_004004405.1| - 0.00013 21.4 0.4 0.0016 17.8 0.0 2.6 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|312137068|ref|YP_004004405.1| - 0.0015 18.6 0.1 0.0079 16.3 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|312137068|ref|YP_004004405.1| - 0.012 15.9 0.2 0.086 13.2 0.0 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GATase_3 PF07685.9 gi|312137069|ref|YP_004004406.1| - 8.1e-31 106.7 0.1 1.2e-30 106.2 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|312137069|ref|YP_004004406.1| - 6.8e-22 77.8 0.2 1.9e-21 76.3 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|312137069|ref|YP_004004406.1| - 7.2e-12 45.3 2.7 2.1e-06 27.4 0.1 2.3 1 1 0 2 2 2 2 AAA domain DJ-1_PfpI PF01965.19 gi|312137069|ref|YP_004004406.1| - 0.0079 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.14 gi|312137069|ref|YP_004004406.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Radical_SAM PF04055.16 gi|312137070|ref|YP_004004407.1| - 1.1e-19 71.2 0.9 5.1e-18 65.7 0.1 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137070|ref|YP_004004407.1| - 3.8e-15 56.2 0.6 3.8e-15 56.2 0.4 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137070|ref|YP_004004407.1| - 3.3e-14 52.9 0.1 8.4e-14 51.6 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|312137070|ref|YP_004004407.1| - 1.7e-07 30.8 26.7 1.1e-05 25.1 8.6 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312137070|ref|YP_004004407.1| - 1.4e-06 27.6 3.5 1.4e-06 27.6 2.4 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer2_4 PF13510.1 gi|312137070|ref|YP_004004407.1| - 4.5e-06 26.3 0.2 1e-05 25.2 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.2 gi|312137070|ref|YP_004004407.1| - 8.3e-06 25.4 13.2 0.00013 21.6 2.1 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312137070|ref|YP_004004407.1| - 3.6e-05 23.4 2.1 3.6e-05 23.4 1.5 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137070|ref|YP_004004407.1| - 0.00012 22.3 22.4 0.043 14.1 9.2 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137070|ref|YP_004004407.1| - 0.00013 22.2 12.8 0.00013 22.2 8.9 3.7 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312137070|ref|YP_004004407.1| - 0.00013 22.0 10.4 0.00059 19.9 0.6 4.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312137070|ref|YP_004004407.1| - 0.00016 21.4 2.1 0.00016 21.4 1.4 3.6 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312137070|ref|YP_004004407.1| - 0.00019 21.7 13.8 0.0054 17.0 1.3 3.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain UBA_4 PF14555.1 gi|312137070|ref|YP_004004407.1| - 0.0027 17.2 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain Fer4_18 PF13746.1 gi|312137070|ref|YP_004004407.1| - 0.0055 17.0 19.0 0.045 14.1 2.3 3.9 3 1 1 4 4 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312137070|ref|YP_004004407.1| - 0.0063 17.0 7.8 0.016 15.7 0.3 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|312137070|ref|YP_004004407.1| - 0.012 15.6 19.7 0.061 13.3 2.4 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137070|ref|YP_004004407.1| - 0.013 15.9 5.0 0.013 15.9 3.5 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer2_3 PF13085.1 gi|312137070|ref|YP_004004407.1| - 0.027 14.2 0.7 0.066 13.0 0.5 1.7 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.1 gi|312137070|ref|YP_004004407.1| - 0.034 14.8 4.0 0.034 14.8 2.8 3.2 3 1 0 3 3 2 0 4Fe-4S double cluster binding domain DUF458 PF04308.7 gi|312137070|ref|YP_004004407.1| - 0.034 13.8 0.3 0.069 12.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF458) Fer4_13 PF13370.1 gi|312137070|ref|YP_004004407.1| - 0.041 14.2 15.7 0.14 12.5 1.6 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain PolC_DP2 PF03833.8 gi|312137071|ref|YP_004004408.1| - 0 1207.7 11.3 0 1204.8 7.8 2.3 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 PT-HINT PF07591.6 gi|312137071|ref|YP_004004408.1| - 0.0015 18.4 4.0 0.046 13.6 0.2 3.5 3 0 0 3 3 3 2 Pretoxin HINT domain CobN-Mg_chel PF02514.11 gi|312137072|ref|YP_004004409.1| - 1.3e-291 969.8 0.0 5.2e-224 746.0 0.0 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase FliD_C PF07195.7 gi|312137072|ref|YP_004004409.1| - 0.0026 17.1 0.2 0.0071 15.6 0.2 1.8 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Glyco_tran_WecB PF03808.8 gi|312137072|ref|YP_004004409.1| - 0.065 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family DUF2012 PF09430.5 gi|312137072|ref|YP_004004409.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) MotA_ExbB PF01618.11 gi|312137073|ref|YP_004004410.1| - 3.9e-06 26.5 1.0 4.3e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family Sigma70_r4 PF04545.11 gi|312137073|ref|YP_004004410.1| - 0.052 12.8 0.9 5.9 6.2 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Methyltrn_RNA_3 PF02598.12 gi|312137074|ref|YP_004004411.1| - 3.5e-66 223.5 0.2 4.4e-66 223.1 0.2 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.1 gi|312137074|ref|YP_004004411.1| - 4.2e-06 26.0 0.2 0.00024 20.3 0.0 2.2 2 0 0 2 2 2 2 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.14 gi|312137074|ref|YP_004004411.1| - 0.0016 18.3 0.0 0.45 10.3 0.0 2.3 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.17 gi|312137075|ref|YP_004004412.1| - 1.8e-83 280.0 0.2 2e-83 279.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|312137076|ref|YP_004004413.1| - 1.1e-47 161.9 0.3 1.2e-47 161.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|312137077|ref|YP_004004414.1| - 3.8e-18 65.2 3.2 5.1e-18 64.7 2.2 1.2 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.13 gi|312137078|ref|YP_004004415.1| - 7.5e-47 158.3 2.9 1.2e-46 157.6 2.0 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|312137078|ref|YP_004004415.1| - 8e-22 77.0 0.2 2.5e-21 75.3 0.1 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|312137079|ref|YP_004004416.1| - 1.7e-30 104.4 0.9 2.4e-30 103.9 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 PaaSYMP PF14738.1 gi|312137079|ref|YP_004004416.1| - 0.028 14.1 0.4 0.041 13.6 0.3 1.2 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 Phage_pRha PF09669.5 gi|312137079|ref|YP_004004416.1| - 0.14 12.5 0.3 0.22 11.8 0.2 1.4 1 1 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) DMA PF03474.9 gi|312137079|ref|YP_004004416.1| - 0.17 11.7 2.6 8.4 6.3 0.2 2.3 1 1 1 2 2 2 0 DMRTA motif Ribosomal_L22 PF00237.14 gi|312137080|ref|YP_004004417.1| - 5.4e-36 122.7 0.1 6.8e-36 122.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF98 PF01947.11 gi|312137080|ref|YP_004004417.1| - 0.0065 16.2 0.1 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF98) PABP PF00658.13 gi|312137080|ref|YP_004004417.1| - 0.022 14.4 0.0 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 Poly-adenylate binding protein, unique domain Ribosomal_S3_C PF00189.15 gi|312137081|ref|YP_004004418.1| - 1.1e-17 63.9 0.5 2.1e-17 63.1 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|312137081|ref|YP_004004418.1| - 1.1e-16 60.1 0.1 2.8e-16 58.8 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|312137081|ref|YP_004004418.1| - 0.015 14.9 2.6 0.029 14.0 0.2 2.5 3 0 0 3 3 3 0 KH domain KH_3 PF13014.1 gi|312137081|ref|YP_004004418.1| - 0.025 14.2 2.6 0.15 11.7 0.4 2.9 3 0 0 3 3 3 0 KH domain KH_4 PF13083.1 gi|312137081|ref|YP_004004418.1| - 0.033 13.8 0.4 0.1 12.2 0.1 1.9 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|312137082|ref|YP_004004419.1| - 4.8e-21 74.2 0.8 5.3e-21 74.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Cep57_MT_bd PF06657.8 gi|312137082|ref|YP_004004419.1| - 0.031 14.2 0.5 0.039 13.8 0.3 1.2 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF1192 PF06698.6 gi|312137082|ref|YP_004004419.1| - 0.04 13.7 10.3 0.063 13.0 3.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) DUF3166 PF11365.3 gi|312137082|ref|YP_004004419.1| - 0.056 13.9 0.1 0.063 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3166) MADF_DNA_bdg PF10545.4 gi|312137082|ref|YP_004004419.1| - 0.13 12.4 0.2 0.17 12.0 0.1 1.3 1 1 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Cir_N PF10197.4 gi|312137082|ref|YP_004004419.1| - 2.1 8.4 6.2 1.8 8.6 3.0 1.8 2 0 0 2 2 2 0 N-terminal domain of CBF1 interacting co-repressor CIR SUI1 PF01253.17 gi|312137083|ref|YP_004004420.1| - 8.7e-26 89.5 4.0 1.1e-25 89.2 2.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|312137083|ref|YP_004004420.1| - 0.00023 21.3 2.1 0.00051 20.2 1.5 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF2110 PF09883.4 gi|312137083|ref|YP_004004420.1| - 0.0051 16.4 0.0 0.0056 16.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) DTW PF03942.10 gi|312137083|ref|YP_004004420.1| - 0.0076 15.4 2.4 0.01 15.0 1.6 1.1 1 0 0 1 1 1 1 DTW domain DUF4322 PF14210.1 gi|312137083|ref|YP_004004420.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4322) DUF4479 PF14794.1 gi|312137083|ref|YP_004004420.1| - 0.088 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) NIF3 PF01784.13 gi|312137083|ref|YP_004004420.1| - 0.12 11.8 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) UPF0086 PF01868.11 gi|312137084|ref|YP_004004421.1| - 9.2e-33 111.7 0.6 1e-32 111.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.14 gi|312137084|ref|YP_004004421.1| - 0.28 10.9 2.2 0.69 9.6 0.4 2.1 2 1 1 3 3 3 0 Myosin N-terminal SH3-like domain Ribosomal_S17 PF00366.15 gi|312137085|ref|YP_004004422.1| - 7e-30 102.8 3.0 9e-30 102.5 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|312137086|ref|YP_004004423.1| - 1.2e-37 128.3 0.1 1.4e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TOBE_3 PF12857.2 gi|312137086|ref|YP_004004423.1| - 0.11 12.3 0.2 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 TOBE-like domain KOW PF00467.24 gi|312137087|ref|YP_004004424.1| - 1.1e-08 34.4 3.7 2.1e-08 33.5 2.6 1.5 1 0 0 1 1 1 1 KOW motif eIF-1a PF01176.14 gi|312137087|ref|YP_004004424.1| - 0.81 9.1 3.6 0.59 9.6 1.0 2.0 2 1 0 2 2 2 0 Translation initiation factor 1A / IF-1 Ribosomal_S4e PF00900.15 gi|312137088|ref|YP_004004425.1| - 5.5e-30 102.8 2.1 1.1e-29 101.9 1.5 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|312137088|ref|YP_004004425.1| - 2.7e-19 68.7 8.7 6e-19 67.6 6.0 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|312137088|ref|YP_004004425.1| - 4.8e-10 38.7 0.1 1.5e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|312137088|ref|YP_004004425.1| - 0.00087 18.9 0.0 0.0031 17.1 0.0 2.0 1 0 0 1 1 1 1 KOW motif Ribosomal_S28e PF01200.13 gi|312137088|ref|YP_004004425.1| - 0.083 12.6 1.0 2.7 7.7 0.1 2.7 2 1 0 2 2 2 0 Ribosomal protein S28e Pox_A8 PF04745.7 gi|312137088|ref|YP_004004425.1| - 0.12 11.3 0.3 4.6 6.1 0.0 2.1 2 0 0 2 2 2 0 VITF-3 subunit protein Ribosomal_L5_C PF00673.16 gi|312137089|ref|YP_004004426.1| - 1.3e-26 92.1 0.1 2.3e-26 91.3 0.1 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|312137089|ref|YP_004004426.1| - 6.9e-18 64.1 0.1 1.9e-17 62.8 0.0 1.8 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|312137090|ref|YP_004004427.1| - 4.6e-19 67.5 3.8 4.9e-19 67.4 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Mu-like_Com PF10122.4 gi|312137090|ref|YP_004004427.1| - 0.026 13.5 1.9 0.29 10.2 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF1451 PF07295.6 gi|312137090|ref|YP_004004427.1| - 0.033 13.9 0.5 0.04 13.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|312137090|ref|YP_004004427.1| - 0.064 12.7 1.0 0.098 12.1 0.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|312137090|ref|YP_004004427.1| - 0.064 13.0 0.6 0.11 12.3 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|312137090|ref|YP_004004427.1| - 0.11 12.3 0.6 0.13 12.1 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family RIG-I_C-RD PF11648.3 gi|312137090|ref|YP_004004427.1| - 0.42 10.4 2.8 0.93 9.3 0.2 1.9 1 1 1 2 2 2 0 C-terminal domain of RIG-I zf-dskA_traR PF01258.12 gi|312137090|ref|YP_004004427.1| - 1.5 8.6 5.2 15 5.4 3.6 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-FPG_IleRS PF06827.9 gi|312137090|ref|YP_004004427.1| - 3.3 7.4 5.3 45 3.8 3.7 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_S8 PF00410.14 gi|312137091|ref|YP_004004428.1| - 8.1e-28 96.8 0.0 1.1e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|312137092|ref|YP_004004429.1| - 2.2e-29 101.7 13.1 4.6e-19 68.6 2.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.16 gi|312137092|ref|YP_004004429.1| - 0.0093 15.8 5.8 0.85 9.5 0.1 3.2 3 1 0 3 3 3 2 Hsp20/alpha crystallin family BON PF04972.12 gi|312137092|ref|YP_004004429.1| - 0.1 12.3 1.4 4.2 7.1 0.1 3.4 4 1 0 4 4 4 0 BON domain RNA_bind_2 PF10133.4 gi|312137092|ref|YP_004004429.1| - 4.5 7.3 6.8 24 5.0 0.2 3.6 3 1 1 4 4 4 0 Predicted RNA-binding protein Ribosomal_L32e PF01655.13 gi|312137093|ref|YP_004004430.1| - 6e-47 158.2 2.3 6.6e-47 158.1 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|312137094|ref|YP_004004431.1| - 5.8e-59 198.1 18.9 6.4e-59 197.9 13.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e GntR PF00392.16 gi|312137094|ref|YP_004004431.1| - 0.041 13.3 0.5 0.21 11.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF4258 PF14076.1 gi|312137094|ref|YP_004004431.1| - 0.12 12.3 0.2 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) DUF3391 PF11871.3 gi|312137094|ref|YP_004004431.1| - 0.32 11.1 4.2 0.77 9.9 2.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) S4 PF01479.20 gi|312137094|ref|YP_004004431.1| - 0.59 9.6 3.7 5.8 6.4 0.1 2.8 2 1 0 2 2 2 0 S4 domain FAM74 PF15026.1 gi|312137094|ref|YP_004004431.1| - 0.71 9.5 6.1 0.77 9.4 3.3 1.7 1 1 1 2 2 2 0 FAM74 protein HTH_17 PF12728.2 gi|312137094|ref|YP_004004431.1| - 6.1 7.1 12.5 23 5.3 2.2 4.3 3 2 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L18p PF00861.17 gi|312137095|ref|YP_004004432.1| - 1.1e-39 135.3 0.1 1.4e-39 134.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|312137095|ref|YP_004004432.1| - 5e-08 33.4 0.0 9.2e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.15 gi|312137096|ref|YP_004004433.1| - 1.9e-28 97.9 3.7 4.6e-28 96.7 2.5 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|312137096|ref|YP_004004433.1| - 9.5e-25 85.6 0.2 1.5e-24 85.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Qn_am_d_aIII PF09099.5 gi|312137096|ref|YP_004004433.1| - 0.031 14.5 0.3 0.07 13.4 0.2 1.5 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Ribosomal_L30 PF00327.15 gi|312137097|ref|YP_004004434.1| - 1e-19 69.8 0.1 1.6e-19 69.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e CBS PF00571.23 gi|312137097|ref|YP_004004434.1| - 0.082 12.7 0.0 0.48 10.2 0.0 2.1 3 0 0 3 3 3 0 CBS domain FeS PF04060.8 gi|312137097|ref|YP_004004434.1| - 0.082 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative Fe-S cluster dNK PF01712.14 gi|312137097|ref|YP_004004434.1| - 0.095 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase Ribosomal_L18e PF00828.14 gi|312137098|ref|YP_004004435.1| - 6.5e-35 120.3 2.1 8e-35 120.0 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|312137099|ref|YP_004004436.1| - 2.5e-89 299.6 15.3 3e-89 299.3 10.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|312137099|ref|YP_004004436.1| - 3.6e-11 42.3 1.2 1.3e-10 40.6 0.8 2.1 1 0 0 1 1 1 1 Plug domain of Sec61p RseC_MucC PF04246.7 gi|312137099|ref|YP_004004436.1| - 0.053 13.0 1.5 1 8.9 0.1 2.9 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC AAA_18 PF13238.1 gi|312137100|ref|YP_004004437.1| - 1e-21 77.5 0.4 1.8e-21 76.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312137100|ref|YP_004004437.1| - 5e-09 37.0 0.1 8.3e-09 36.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|312137100|ref|YP_004004437.1| - 4.6e-06 26.6 0.1 2.2e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|312137100|ref|YP_004004437.1| - 3.1e-05 23.8 0.1 6.5e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|312137100|ref|YP_004004437.1| - 0.00033 20.3 0.2 0.0021 17.7 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain KTI12 PF08433.5 gi|312137100|ref|YP_004004437.1| - 0.00047 19.4 0.7 0.0006 19.0 0.3 1.3 1 1 0 1 1 1 1 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|312137100|ref|YP_004004437.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|312137100|ref|YP_004004437.1| - 0.0027 16.5 0.1 0.0041 16.0 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain cobW PF02492.14 gi|312137100|ref|YP_004004437.1| - 0.003 17.0 0.0 0.0056 16.1 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.4 gi|312137100|ref|YP_004004437.1| - 0.0031 16.5 0.2 0.0045 16.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Pyr_redox PF00070.22 gi|312137100|ref|YP_004004437.1| - 0.0036 17.6 1.1 0.17 12.2 0.2 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Zeta_toxin PF06414.7 gi|312137100|ref|YP_004004437.1| - 0.0046 16.0 0.4 0.01 14.9 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|312137100|ref|YP_004004437.1| - 0.0082 15.8 1.9 0.0086 15.7 0.2 2.0 2 1 0 2 2 2 1 NTPase AAA_14 PF13173.1 gi|312137100|ref|YP_004004437.1| - 0.011 15.5 0.5 0.019 14.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|312137100|ref|YP_004004437.1| - 0.017 15.2 0.1 0.16 12.1 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|312137100|ref|YP_004004437.1| - 0.031 13.9 2.5 0.036 13.7 0.2 1.9 2 0 0 2 2 2 0 Archaeal ATPase ADK PF00406.17 gi|312137100|ref|YP_004004437.1| - 0.073 12.9 0.4 0.26 11.1 0.3 2.0 1 1 0 1 1 1 0 Adenylate kinase AAA_22 PF13401.1 gi|312137100|ref|YP_004004437.1| - 0.082 13.0 1.1 0.29 11.2 0.8 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|312137100|ref|YP_004004437.1| - 0.095 12.9 0.5 0.13 12.5 0.3 1.4 1 1 0 1 1 1 0 ABC transporter SKI PF01202.17 gi|312137100|ref|YP_004004437.1| - 0.22 11.3 2.5 0.6 9.9 1.7 1.8 1 1 0 1 1 1 0 Shikimate kinase ATP_bind_2 PF03668.10 gi|312137100|ref|YP_004004437.1| - 0.26 10.3 2.6 9.4 5.2 1.8 2.4 1 1 0 1 1 1 0 P-loop ATPase protein family Ribosomal_L12 PF00542.14 gi|312137100|ref|YP_004004437.1| - 0.38 10.7 4.7 0.22 11.5 0.9 2.4 3 0 0 3 3 3 0 Ribosomal protein L7/L12 C-terminal domain DUF1090 PF06476.7 gi|312137100|ref|YP_004004437.1| - 1.1 8.9 6.8 1.6 8.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) DUF106 PF01956.11 gi|312137101|ref|YP_004004438.1| - 2.8e-30 105.0 2.1 3.4e-30 104.7 1.5 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|312137101|ref|YP_004004438.1| - 0.00044 19.9 4.1 0.00064 19.4 2.9 1.4 1 1 0 1 1 1 1 60Kd inner membrane protein FliJ PF02050.11 gi|312137101|ref|YP_004004438.1| - 0.004 17.2 1.3 0.0054 16.7 0.9 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein DUF2208 PF09973.4 gi|312137101|ref|YP_004004438.1| - 0.0049 16.1 2.5 0.0065 15.7 1.8 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF2207 PF09972.4 gi|312137101|ref|YP_004004438.1| - 0.0083 14.7 0.1 0.0089 14.6 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) MxiH PF09392.5 gi|312137101|ref|YP_004004438.1| - 0.022 15.2 0.2 0.051 14.1 0.0 1.6 2 0 0 2 2 2 0 Type III secretion needle MxiH like TRP PF06011.7 gi|312137101|ref|YP_004004438.1| - 0.069 11.7 0.0 0.09 11.3 0.0 1.2 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF4423 PF14394.1 gi|312137101|ref|YP_004004438.1| - 0.093 12.2 2.0 0.33 10.4 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Mitofilin PF09731.4 gi|312137101|ref|YP_004004438.1| - 0.14 10.7 1.9 0.18 10.4 1.3 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF1090 PF06476.7 gi|312137101|ref|YP_004004438.1| - 0.57 9.8 5.4 0.8 9.3 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) CHD5 PF04420.9 gi|312137101|ref|YP_004004438.1| - 6.1 6.4 7.3 0.82 9.3 0.5 2.1 2 0 0 2 2 2 0 CHD5-like protein Ribosomal_L34e PF01199.13 gi|312137102|ref|YP_004004439.1| - 1.6e-30 105.1 10.1 1.7e-30 105.0 7.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e C1_1 PF00130.17 gi|312137102|ref|YP_004004439.1| - 0.011 15.4 0.1 0.066 12.9 0.1 1.9 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2197 PF09963.4 gi|312137102|ref|YP_004004439.1| - 0.029 14.3 0.9 0.051 13.5 0.6 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-FCS PF06467.9 gi|312137102|ref|YP_004004439.1| - 0.04 13.5 0.5 0.25 11.0 0.4 2.2 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif NinF PF05810.7 gi|312137102|ref|YP_004004439.1| - 0.042 13.6 0.1 0.46 10.3 0.0 2.1 2 0 0 2 2 2 0 NinF protein PHD PF00628.24 gi|312137102|ref|YP_004004439.1| - 0.1 12.2 1.7 0.95 9.2 1.2 2.0 1 1 0 1 1 1 0 PHD-finger Tnp_zf-ribbon_2 PF13842.1 gi|312137102|ref|YP_004004439.1| - 0.13 12.6 2.8 8.8 6.8 0.3 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Cytidylate_kin2 PF13189.1 gi|312137103|ref|YP_004004440.1| - 1.9e-24 86.5 2.6 1.5e-23 83.6 1.8 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|312137103|ref|YP_004004440.1| - 1.6e-19 70.4 0.9 2.3e-19 69.9 0.6 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312137103|ref|YP_004004440.1| - 2.6e-16 60.5 0.8 5.1e-16 59.5 0.3 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|312137103|ref|YP_004004440.1| - 2.3e-10 40.1 0.9 3.4e-10 39.5 0.6 1.3 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|312137103|ref|YP_004004440.1| - 3e-07 30.4 2.2 1.1e-06 28.6 1.5 1.8 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|312137103|ref|YP_004004440.1| - 9.2e-06 25.5 0.3 0.002 18.0 0.0 2.2 1 1 0 2 2 2 1 AAA domain ADK PF00406.17 gi|312137103|ref|YP_004004440.1| - 2.5e-05 24.1 0.2 5.9e-05 22.9 0.1 1.8 1 1 0 1 1 1 1 Adenylate kinase SRP54 PF00448.17 gi|312137103|ref|YP_004004440.1| - 0.0028 17.1 0.0 0.01 15.2 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PRK PF00485.13 gi|312137103|ref|YP_004004440.1| - 0.019 14.5 0.6 0.16 11.4 0.2 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family CPT PF07931.7 gi|312137103|ref|YP_004004440.1| - 0.022 14.3 0.1 0.52 9.9 0.1 2.1 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|312137103|ref|YP_004004440.1| - 0.022 14.9 0.1 0.039 14.1 0.1 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|312137103|ref|YP_004004440.1| - 0.039 13.6 0.2 0.073 12.7 0.1 1.6 1 1 0 1 1 1 0 Adenylylsulphate kinase DUF1128 PF06569.6 gi|312137103|ref|YP_004004440.1| - 0.048 13.3 1.3 0.37 10.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) AAA_28 PF13521.1 gi|312137103|ref|YP_004004440.1| - 0.054 13.4 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2031 PF09592.5 gi|312137103|ref|YP_004004440.1| - 0.52 9.4 9.1 2.7 7.0 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2031) Thymidylate_kin PF02223.12 gi|312137103|ref|YP_004004440.1| - 0.89 8.8 6.6 4.9 6.4 0.1 3.0 1 1 2 3 3 3 0 Thymidylate kinase KOW PF00467.24 gi|312137104|ref|YP_004004441.1| - 0.012 15.3 2.7 0.013 15.1 1.0 1.7 2 0 0 2 2 2 0 KOW motif MtrG PF04210.8 gi|312137104|ref|YP_004004441.1| - 0.054 13.1 1.0 0.11 12.1 0.7 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G TruB_N PF01509.13 gi|312137105|ref|YP_004004442.1| - 3.2e-29 102.0 2.7 6.3e-26 91.3 1.2 3.4 2 1 0 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|312137105|ref|YP_004004442.1| - 7.4e-23 80.2 0.0 1.8e-22 78.9 0.0 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|312137105|ref|YP_004004442.1| - 2.1e-21 75.4 1.6 4.7e-21 74.2 0.4 2.2 3 0 0 3 3 3 1 PUA domain RNA_pol_Rpb5_C PF01191.14 gi|312137105|ref|YP_004004442.1| - 0.0062 16.1 0.1 0.99 9.0 0.0 2.4 2 0 0 2 2 2 2 RNA polymerase Rpb5, C-terminal domain Ribosomal_S13 PF00416.17 gi|312137106|ref|YP_004004443.1| - 3.4e-31 107.8 0.3 4.1e-31 107.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.1 gi|312137106|ref|YP_004004443.1| - 0.047 13.8 0.8 0.078 13.1 0.5 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.20 gi|312137107|ref|YP_004004444.1| - 4.1e-15 54.9 2.2 4.3e-15 54.8 0.1 2.1 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|312137107|ref|YP_004004444.1| - 0.0044 17.3 2.9 0.0044 17.3 2.0 1.9 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain DUF530 PF04409.7 gi|312137107|ref|YP_004004444.1| - 0.0054 14.8 3.9 0.0074 14.4 2.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF530) RQC PF09382.5 gi|312137107|ref|YP_004004444.1| - 0.071 12.8 0.3 0.19 11.4 0.2 1.7 2 0 0 2 2 2 0 RQC domain Ribosomal_S11 PF00411.14 gi|312137108|ref|YP_004004445.1| - 6.8e-40 135.6 0.5 7.9e-40 135.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|312137109|ref|YP_004004446.1| - 2.5e-34 117.8 0.6 2.5e-33 114.5 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|312137109|ref|YP_004004446.1| - 1.8e-17 62.2 0.0 2.3e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|312137109|ref|YP_004004446.1| - 3.8e-06 26.2 14.1 0.00066 19.1 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312137109|ref|YP_004004446.1| - 9.3e-06 25.3 14.3 9.3e-06 25.3 9.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137109|ref|YP_004004446.1| - 2.5e-05 24.4 13.0 2.5e-05 24.4 9.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain RNA_pol_L_2 PF13656.1 gi|312137109|ref|YP_004004446.1| - 0.00011 21.5 0.1 0.018 14.4 0.0 2.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|312137109|ref|YP_004004446.1| - 0.00036 20.8 13.3 0.00036 20.8 9.2 2.6 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312137109|ref|YP_004004446.1| - 0.0011 18.9 13.0 0.18 11.8 0.2 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137109|ref|YP_004004446.1| - 0.019 15.7 3.4 0.019 15.7 2.4 3.2 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|312137109|ref|YP_004004446.1| - 0.083 13.4 4.3 0.083 13.4 3.0 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_L18e PF00828.14 gi|312137110|ref|YP_004004447.1| - 1.5e-18 67.4 1.9 2e-18 67.0 1.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Senescence PF06911.7 gi|312137110|ref|YP_004004447.1| - 0.076 12.7 0.1 0.095 12.3 0.1 1.2 1 0 0 1 1 1 0 Senescence-associated protein Ribosomal_L13 PF00572.13 gi|312137111|ref|YP_004004448.1| - 1e-27 96.7 0.0 1.2e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|312137112|ref|YP_004004449.1| - 6.1e-38 129.7 1.6 6.8e-38 129.6 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|312137113|ref|YP_004004450.1| - 1.5e-28 98.5 1.6 1.7e-28 98.4 1.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|312137113|ref|YP_004004450.1| - 0.00033 20.6 0.5 0.00041 20.3 0.3 1.1 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.17 gi|312137114|ref|YP_004004451.1| - 7.2e-17 60.8 0.0 7.8e-17 60.7 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|312137115|ref|YP_004004452.1| - 5e-76 255.5 0.0 6.8e-76 255.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|312137115|ref|YP_004004452.1| - 1.4e-41 141.4 0.3 6.1e-41 139.4 0.1 2.1 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|312137115|ref|YP_004004452.1| - 0.001 18.9 0.0 0.003 17.5 0.0 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|312137115|ref|YP_004004452.1| - 0.028 14.9 0.0 0.071 13.6 0.0 1.7 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Ribosomal_S2 PF00318.15 gi|312137116|ref|YP_004004453.1| - 1.3e-39 135.6 0.0 4e-20 71.9 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.12 gi|312137117|ref|YP_004004454.1| - 5.4e-96 320.6 0.0 6.2e-96 320.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|312137117|ref|YP_004004454.1| - 0.004 16.1 0.0 0.005 15.8 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase ETF PF01012.16 gi|312137117|ref|YP_004004454.1| - 0.0086 15.7 0.0 0.015 15.0 0.0 1.4 1 1 0 1 1 1 1 Electron transfer flavoprotein domain HTH_6 PF01418.12 gi|312137117|ref|YP_004004454.1| - 0.094 12.4 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family GHMP_kinases_N PF00288.21 gi|312137118|ref|YP_004004455.1| - 5.2e-16 58.4 0.3 5.2e-16 58.4 0.2 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|312137118|ref|YP_004004455.1| - 1.5e-10 41.1 0.1 2.8e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal AA_kinase PF00696.23 gi|312137119|ref|YP_004004456.1| - 1.1e-45 156.0 0.1 1.3e-45 155.9 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|312137120|ref|YP_004004457.1| - 1.2e-39 136.2 0.0 3.7e-28 98.3 0.0 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|312137120|ref|YP_004004457.1| - 3.2e-07 29.5 4.7 1.6e-05 23.9 0.7 2.8 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|312137120|ref|YP_004004457.1| - 3.9e-06 26.0 4.8 4.2e-06 25.9 1.6 1.9 1 1 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|312137120|ref|YP_004004457.1| - 2.3e-05 23.4 2.3 8.4e-05 21.6 0.1 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|312137120|ref|YP_004004457.1| - 0.00018 20.8 2.8 0.00018 20.8 1.9 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|312137120|ref|YP_004004457.1| - 0.00035 19.9 3.0 0.0044 16.3 0.0 2.9 2 1 0 3 3 3 1 Histidine biosynthesis protein ThiG PF05690.9 gi|312137120|ref|YP_004004457.1| - 0.00067 18.8 4.8 0.02 13.9 0.5 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|312137120|ref|YP_004004457.1| - 0.0013 17.6 0.3 0.017 14.0 0.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF561) DeoC PF01791.4 gi|312137120|ref|YP_004004457.1| - 0.0039 16.5 4.6 0.047 12.9 0.3 2.5 2 0 0 2 2 2 1 DeoC/LacD family aldolase PcrB PF01884.12 gi|312137120|ref|YP_004004457.1| - 0.052 12.7 1.4 0.18 11.0 0.0 2.4 2 1 1 3 3 3 0 PcrB family Dus PF01207.12 gi|312137120|ref|YP_004004457.1| - 0.097 11.4 0.5 0.24 10.2 0.4 1.7 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|312137120|ref|YP_004004457.1| - 2 7.5 6.3 3.4 6.7 0.3 2.6 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Lactamase_B PF00753.22 gi|312137121|ref|YP_004004458.1| - 6.9e-17 61.7 0.8 2.7e-16 59.8 0.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|312137121|ref|YP_004004458.1| - 7.4e-09 35.2 0.5 2e-08 33.9 0.3 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|312137121|ref|YP_004004458.1| - 4.4e-06 26.3 0.4 9e-06 25.3 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF257 PF03192.8 gi|312137121|ref|YP_004004458.1| - 0.05 12.8 4.0 0.56 9.4 0.1 2.4 2 0 0 2 2 2 0 Pyrococcus protein of unknown function, DUF257 DRTGG PF07085.7 gi|312137121|ref|YP_004004458.1| - 0.073 12.6 0.2 0.51 9.9 0.0 2.5 2 1 1 3 3 3 0 DRTGG domain polyprenyl_synt PF00348.12 gi|312137122|ref|YP_004004459.1| - 2.5e-77 259.2 0.8 3.2e-77 258.8 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.16 gi|312137123|ref|YP_004004460.1| - 1.6e-82 276.6 0.1 1.6e-82 276.6 0.1 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|312137123|ref|YP_004004460.1| - 1.6e-27 96.2 0.1 1.6e-27 96.2 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain Aminotran_1_2 PF00155.16 gi|312137124|ref|YP_004004461.1| - 8.1e-34 117.1 0.0 1.4e-33 116.3 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|312137124|ref|YP_004004461.1| - 0.018 14.1 0.0 0.045 12.9 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase Desulfoferrodox PF01880.13 gi|312137125|ref|YP_004004462.1| - 6.1e-25 87.3 0.2 9.4e-25 86.7 0.1 1.3 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.7 gi|312137125|ref|YP_004004462.1| - 2e-19 68.6 6.7 3.3e-19 67.9 4.6 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|312137125|ref|YP_004004462.1| - 0.039 13.9 0.1 0.072 13.0 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HemY_N PF07219.8 gi|312137126|ref|YP_004004463.1| - 0.004 16.6 0.0 0.01 15.4 0.0 1.6 2 0 0 2 2 2 1 HemY protein N-terminus YfdX PF10938.3 gi|312137126|ref|YP_004004463.1| - 0.0047 16.6 0.2 0.065 12.8 0.0 2.4 2 1 0 2 2 2 1 YfdX protein FixQ PF05545.6 gi|312137126|ref|YP_004004463.1| - 0.023 14.3 0.0 0.16 11.6 0.0 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF3533 PF12051.3 gi|312137126|ref|YP_004004463.1| - 0.026 13.2 8.6 0.0078 15.0 4.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3533) ABC2_membrane_3 PF12698.2 gi|312137126|ref|YP_004004463.1| - 0.04 12.9 6.4 0.054 12.5 4.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4398 PF14346.1 gi|312137126|ref|YP_004004463.1| - 0.1 12.6 0.2 12 6.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) DUF4363 PF14276.1 gi|312137126|ref|YP_004004463.1| - 0.39 10.4 9.4 1.8 8.3 5.3 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4363) YMF19 PF02326.10 gi|312137126|ref|YP_004004463.1| - 0.89 10.1 4.9 0.44 11.1 0.8 2.1 1 1 0 2 2 2 0 Plant ATP synthase F0 DNA_pol_B PF00136.16 gi|312137127|ref|YP_004004464.1| - 2.2e-55 188.3 0.0 4e-55 187.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|312137127|ref|YP_004004464.1| - 1.3e-44 152.4 6.4 2.2e-44 151.6 4.4 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|312137127|ref|YP_004004464.1| - 1.8e-11 43.9 0.0 3.1e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|312137127|ref|YP_004004464.1| - 4.6e-11 42.8 0.2 2e-10 40.7 0.2 2.2 1 1 0 1 1 1 1 RNase_H superfamily DUF643 PF04867.7 gi|312137127|ref|YP_004004464.1| - 0.83 10.0 8.0 0.2 12.0 0.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF643) DUF521 PF04412.8 gi|312137128|ref|YP_004004465.1| - 3.6e-154 513.1 0.0 4.1e-154 512.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.15 gi|312137128|ref|YP_004004465.1| - 0.0051 15.3 0.5 0.0075 14.7 0.4 1.2 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DHHA1 PF02272.14 gi|312137129|ref|YP_004004466.1| - 2.1e-13 49.7 0.5 2e-12 46.6 0.1 2.5 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|312137129|ref|YP_004004466.1| - 6.8e-12 45.2 2.1 1.4e-11 44.2 1.4 1.4 1 0 0 1 1 1 1 DHH family TPR_19 PF14559.1 gi|312137129|ref|YP_004004466.1| - 0.048 13.9 0.0 7.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|312137129|ref|YP_004004466.1| - 4.6 7.2 6.2 22 5.1 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Ribosomal_S15 PF00312.17 gi|312137130|ref|YP_004004467.1| - 1.1e-23 82.8 0.3 1.6e-23 82.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|312137130|ref|YP_004004467.1| - 2.7e-18 65.5 0.1 8.9e-18 63.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain HTH_7 PF02796.10 gi|312137130|ref|YP_004004467.1| - 0.029 14.2 1.2 0.083 12.7 0.0 2.5 4 0 0 4 4 4 0 Helix-turn-helix domain of resolvase Ham1p_like PF01725.11 gi|312137131|ref|YP_004004468.1| - 1.7e-56 190.6 0.0 1.9e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family T4_Gp59_C PF08994.5 gi|312137131|ref|YP_004004468.1| - 0.033 14.3 0.1 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 T4 gene Gp59 loader of gp41 DNA helicase C-term AAA_17 PF13207.1 gi|312137131|ref|YP_004004468.1| - 0.11 13.3 0.0 0.15 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peptidase_M22 PF00814.20 gi|312137132|ref|YP_004004469.1| - 4.5e-95 318.1 0.0 6.2e-95 317.7 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Pkinase PF00069.20 gi|312137132|ref|YP_004004469.1| - 5.3e-12 45.4 2.7 8.6e-12 44.7 1.9 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|312137132|ref|YP_004004469.1| - 1.6e-11 43.9 0.1 3.5e-11 42.8 0.0 1.5 1 1 0 1 1 1 1 RIO1 family Pkinase_Tyr PF07714.12 gi|312137132|ref|YP_004004469.1| - 3e-10 39.5 0.3 4.9e-10 38.9 0.2 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|312137132|ref|YP_004004469.1| - 1e-08 34.4 0.0 2.8e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|312137132|ref|YP_004004469.1| - 0.00024 20.9 0.0 0.0071 16.1 0.1 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|312137132|ref|YP_004004469.1| - 0.00085 18.5 1.5 0.0018 17.5 1.1 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|312137132|ref|YP_004004469.1| - 0.004 16.7 0.1 0.0074 15.8 0.1 1.5 1 0 0 1 1 1 1 Choline/ethanolamine kinase BcrAD_BadFG PF01869.15 gi|312137132|ref|YP_004004469.1| - 0.044 13.0 0.0 6.1 6.0 0.0 2.4 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family EcKinase PF02958.15 gi|312137132|ref|YP_004004469.1| - 0.12 11.4 0.2 3.1 6.8 0.0 2.4 1 1 1 2 2 2 0 Ecdysteroid kinase Toxin_2 PF00451.14 gi|312137132|ref|YP_004004469.1| - 0.13 12.3 3.1 0.3 11.1 2.1 1.6 1 0 0 1 1 1 0 Scorpion short toxin, BmKK2 PAP2 PF01569.16 gi|312137133|ref|YP_004004470.1| - 1e-27 96.3 1.9 1e-27 96.3 1.3 1.6 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|312137133|ref|YP_004004470.1| - 4.5e-05 23.0 3.2 0.00023 20.7 2.2 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|312137133|ref|YP_004004470.1| - 0.0029 17.8 1.0 0.0029 17.8 0.7 2.3 2 0 0 2 2 2 1 PAP2 superfamily C-terminal DUF212 PF02681.9 gi|312137133|ref|YP_004004470.1| - 0.062 13.0 0.8 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Divergent PAP2 family DAO PF01266.19 gi|312137133|ref|YP_004004470.1| - 0.086 11.7 0.1 0.47 9.3 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase YesK PF14150.1 gi|312137133|ref|YP_004004470.1| - 0.7 10.0 11.0 0.97 9.5 1.8 2.4 2 0 0 2 2 2 0 YesK-like protein Rhomboid PF01694.17 gi|312137133|ref|YP_004004470.1| - 2.4 8.1 8.2 6.3 6.8 5.6 1.7 1 1 0 1 1 1 0 Rhomboid family eRF1_2 PF03464.10 gi|312137134|ref|YP_004004471.1| - 1.5e-41 141.8 0.9 4.2e-41 140.4 0.0 2.2 3 1 1 4 4 4 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|312137134|ref|YP_004004471.1| - 1.9e-31 108.6 1.4 7.1e-31 106.8 1.0 2.0 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|312137134|ref|YP_004004471.1| - 3.1e-28 97.9 0.0 5.4e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Thioredoxin_8 PF13905.1 gi|312137134|ref|YP_004004471.1| - 0.011 15.8 0.0 1.8 8.7 0.0 2.7 2 0 0 2 2 2 0 Thioredoxin-like SpoU_sub_bind PF08032.7 gi|312137134|ref|YP_004004471.1| - 0.027 14.6 0.2 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Hormone_2 PF00123.15 gi|312137134|ref|YP_004004471.1| - 0.07 12.9 0.3 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Peptide hormone DUF308 PF03729.8 gi|312137135|ref|YP_004004472.1| - 1.2e-06 28.3 53.5 1.3e-05 25.1 14.4 3.1 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) COPI_assoc PF08507.5 gi|312137135|ref|YP_004004472.1| - 0.99 9.0 43.0 0.38 10.4 4.9 2.3 1 1 1 2 2 2 0 COPI associated protein DUF2116 PF09889.4 gi|312137136|ref|YP_004004473.1| - 4e-23 80.9 1.3 4.4e-23 80.8 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.4 gi|312137136|ref|YP_004004473.1| - 0.00037 20.1 5.2 0.0006 19.4 3.6 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|312137136|ref|YP_004004473.1| - 0.01 15.6 0.8 0.014 15.2 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|312137136|ref|YP_004004473.1| - 0.017 14.8 1.8 0.027 14.1 1.2 1.5 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|312137136|ref|YP_004004473.1| - 0.095 11.9 1.8 0.11 11.7 0.7 1.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|312137136|ref|YP_004004473.1| - 0.13 11.7 1.2 0.13 11.7 0.8 1.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2256 PF10013.4 gi|312137136|ref|YP_004004473.1| - 0.14 11.9 5.5 2 8.2 3.8 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) Rad50_zn_hook PF04423.9 gi|312137136|ref|YP_004004473.1| - 0.19 11.1 4.6 0.96 8.9 3.2 1.9 1 1 0 1 1 1 0 Rad50 zinc hook motif zf-NADH-PPase PF09297.6 gi|312137136|ref|YP_004004473.1| - 0.55 9.8 2.5 0.59 9.7 0.1 1.9 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|312137136|ref|YP_004004473.1| - 0.56 9.9 3.8 0.69 9.6 1.0 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain YhfH PF14149.1 gi|312137136|ref|YP_004004473.1| - 6.5 6.6 6.3 22 4.9 4.1 1.9 1 1 1 2 2 2 0 YhfH-like protein AA_kinase PF00696.23 gi|312137137|ref|YP_004004474.1| - 1.1e-28 100.4 0.5 1.3e-28 100.1 0.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family Radical_SAM PF04055.16 gi|312137137|ref|YP_004004474.1| - 0.0026 17.9 0.1 0.18 11.9 0.0 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Mur_ligase_C PF02875.16 gi|312137137|ref|YP_004004474.1| - 0.062 13.3 0.0 5.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain DHFR_1 PF00186.14 gi|312137137|ref|YP_004004474.1| - 0.09 12.3 0.1 9.4 5.7 0.0 2.5 1 1 1 2 2 2 0 Dihydrofolate reductase CW_binding_2 PF04122.7 gi|312137138|ref|YP_004004475.1| - 0.012 15.7 0.1 4 7.7 0.0 2.5 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 MreB_Mbl PF06723.8 gi|312137139|ref|YP_004004476.1| - 4e-100 334.5 16.1 4.7e-100 334.3 11.2 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.15 gi|312137139|ref|YP_004004476.1| - 8.3e-19 66.9 8.2 1.6e-15 56.0 4.0 2.1 1 1 1 2 2 2 2 Hsp70 protein Actin PF00022.14 gi|312137139|ref|YP_004004476.1| - 2e-11 42.9 0.3 4.3e-07 28.7 0.0 2.1 1 1 1 2 2 2 2 Actin FtsA PF14450.1 gi|312137139|ref|YP_004004476.1| - 8e-08 32.1 8.0 2.8e-07 30.4 0.7 2.9 2 1 0 2 2 2 1 Cell division protein FtsA PilM_2 PF11104.3 gi|312137139|ref|YP_004004476.1| - 0.00068 18.6 0.1 0.0024 16.8 0.0 1.9 1 1 1 2 2 2 1 Type IV pilus assembly protein PilM; StbA PF06406.6 gi|312137139|ref|YP_004004476.1| - 0.72 8.7 5.1 0.33 9.8 0.8 2.4 2 1 0 2 2 2 0 StbA protein RNase_HII PF01351.13 gi|312137140|ref|YP_004004477.1| - 8e-56 188.8 1.5 9e-56 188.6 1.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII SEP PF08059.8 gi|312137140|ref|YP_004004477.1| - 0.0075 16.5 0.3 1.2 9.5 0.1 2.5 2 0 0 2 2 2 1 SEP domain DUF2924 PF11149.3 gi|312137140|ref|YP_004004477.1| - 0.03 14.3 0.2 0.045 13.7 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2924) PAS_5 PF07310.8 gi|312137140|ref|YP_004004477.1| - 0.075 12.5 0.1 1.7 8.1 0.0 2.2 2 0 0 2 2 2 0 PAS domain CTP_transf_2 PF01467.21 gi|312137140|ref|YP_004004477.1| - 0.099 12.6 1.2 0.13 12.2 0.7 1.3 1 1 0 1 1 1 0 Cytidylyltransferase PTS_IIB PF02302.12 gi|312137140|ref|YP_004004477.1| - 0.11 13.0 2.5 4.8 7.7 0.1 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit AbiH PF14253.1 gi|312137140|ref|YP_004004477.1| - 0.38 10.3 3.4 0.17 11.4 0.5 1.7 1 1 1 2 2 2 0 Bacteriophage abortive infection AbiH Radical_SAM PF04055.16 gi|312137141|ref|YP_004004478.1| - 4.6e-23 82.2 0.1 1.1e-22 80.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137141|ref|YP_004004478.1| - 0.0059 16.7 0.2 0.036 14.1 0.0 2.3 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137141|ref|YP_004004478.1| - 0.026 14.5 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain CBFD_NFYB_HMF PF00808.18 gi|312137142|ref|YP_004004479.1| - 3.3e-23 81.5 0.4 4e-23 81.2 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|312137142|ref|YP_004004479.1| - 1.8e-15 56.7 0.0 2.2e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|312137142|ref|YP_004004479.1| - 1.8e-05 24.5 0.3 2.1e-05 24.3 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|312137142|ref|YP_004004479.1| - 2.6e-05 24.3 0.0 3.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|312137142|ref|YP_004004479.1| - 0.0012 19.0 0.1 0.0014 18.8 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|312137142|ref|YP_004004479.1| - 0.0086 15.3 0.1 0.0086 15.3 0.1 1.2 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TFIID-31kDa PF02291.10 gi|312137142|ref|YP_004004479.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit EPSP_synthase PF00275.15 gi|312137142|ref|YP_004004479.1| - 0.019 13.4 0.1 0.019 13.3 0.1 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TFIID-18kDa PF02269.11 gi|312137142|ref|YP_004004479.1| - 0.086 12.6 0.1 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit HK97-gp10_like PF04883.7 gi|312137142|ref|YP_004004479.1| - 0.097 13.6 1.3 0.11 13.3 0.9 1.2 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component DUF1490 PF07371.7 gi|312137142|ref|YP_004004479.1| - 0.22 11.5 1.9 0.27 11.1 1.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1490) ABC_tran PF00005.22 gi|312137143|ref|YP_004004480.1| - 5.7e-40 136.7 0.0 4.5e-19 69.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|312137143|ref|YP_004004480.1| - 9.8e-13 47.8 2.1 8.8e-05 21.8 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|312137143|ref|YP_004004480.1| - 3.2e-11 43.7 18.6 0.00015 21.8 1.5 4.5 2 2 0 2 2 2 2 AAA domain RLI PF04068.10 gi|312137143|ref|YP_004004480.1| - 3.4e-11 42.5 2.1 7.9e-11 41.3 1.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|312137143|ref|YP_004004480.1| - 5.7e-07 28.8 3.5 5.7e-07 28.8 2.5 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137143|ref|YP_004004480.1| - 6.9e-05 23.1 7.6 0.00013 22.2 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312137143|ref|YP_004004480.1| - 7.2e-05 22.4 10.2 0.00029 20.5 1.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA PF00004.24 gi|312137143|ref|YP_004004480.1| - 8.9e-05 22.7 0.1 0.3 11.3 0.0 3.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|312137143|ref|YP_004004480.1| - 0.00012 21.9 0.0 0.36 10.7 0.1 3.4 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|312137143|ref|YP_004004480.1| - 0.00034 19.8 7.0 0.94 8.4 0.8 3.8 2 2 1 4 4 4 2 AAA ATPase domain Fer4_21 PF14697.1 gi|312137143|ref|YP_004004480.1| - 0.00035 20.3 7.5 0.00066 19.4 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137143|ref|YP_004004480.1| - 0.00042 20.0 9.0 0.00099 18.8 6.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain DUF258 PF03193.11 gi|312137143|ref|YP_004004480.1| - 0.00051 19.2 0.0 0.043 12.9 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|312137143|ref|YP_004004480.1| - 0.00071 18.3 0.0 0.0063 15.2 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|312137143|ref|YP_004004480.1| - 0.00084 20.1 1.6 0.18 12.6 0.1 3.3 2 2 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|312137143|ref|YP_004004480.1| - 0.0027 17.9 8.7 0.006 16.8 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|312137143|ref|YP_004004480.1| - 0.0037 17.4 0.3 3.6 7.7 0.0 3.1 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|312137143|ref|YP_004004480.1| - 0.0045 17.2 0.7 0.19 12.0 0.1 3.3 3 1 0 3 3 2 1 AAA domain Fer4_2 PF12797.2 gi|312137143|ref|YP_004004480.1| - 0.0049 16.7 10.7 0.02 14.7 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Miro PF08477.8 gi|312137143|ref|YP_004004480.1| - 0.0082 16.6 0.1 7.9 7.0 0.0 3.2 3 0 0 3 3 3 0 Miro-like protein RNA_helicase PF00910.17 gi|312137143|ref|YP_004004480.1| - 0.014 15.5 0.0 2.9 8.0 0.0 2.7 2 0 0 2 2 2 0 RNA helicase RuvB_N PF05496.7 gi|312137143|ref|YP_004004480.1| - 0.016 14.2 0.1 5 6.1 0.0 2.9 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|312137143|ref|YP_004004480.1| - 0.019 14.5 0.1 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|312137143|ref|YP_004004480.1| - 0.022 14.1 1.5 7.9 5.8 0.0 3.3 3 0 0 3 3 3 0 AAA domain Fer4_3 PF12798.2 gi|312137143|ref|YP_004004480.1| - 0.033 14.7 4.1 0.033 14.7 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_28 PF13521.1 gi|312137143|ref|YP_004004480.1| - 0.052 13.5 0.1 19 5.1 0.0 3.0 4 0 0 4 4 2 0 AAA domain AAA_14 PF13173.1 gi|312137143|ref|YP_004004480.1| - 0.059 13.2 5.0 2.1 8.2 0.6 3.5 3 1 0 3 3 2 0 AAA domain AAA_33 PF13671.1 gi|312137143|ref|YP_004004480.1| - 0.14 12.0 0.0 27 4.6 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_23 PF13476.1 gi|312137143|ref|YP_004004480.1| - 0.15 12.3 0.2 0.15 12.3 0.1 3.8 2 2 2 4 4 4 0 AAA domain Fer4_16 PF13484.1 gi|312137143|ref|YP_004004480.1| - 0.19 12.5 9.1 0.11 13.2 1.4 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|312137143|ref|YP_004004480.1| - 0.22 11.5 6.9 0.46 10.5 4.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|312137143|ref|YP_004004480.1| - 0.24 11.3 0.4 1.2 9.1 0.1 2.2 2 2 0 2 2 2 0 AAA ATPase domain Fer4_4 PF12800.2 gi|312137143|ref|YP_004004480.1| - 0.57 10.6 11.9 0.41 11.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312137143|ref|YP_004004480.1| - 6 7.5 8.9 7.3 7.2 1.8 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|312137143|ref|YP_004004480.1| - 7.9 6.9 10.4 77 3.7 7.2 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain bcl-2I13 PF12201.3 gi|312137144|ref|YP_004004481.1| - 0.027 13.9 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing Aminotran_1_2 PF00155.16 gi|312137145|ref|YP_004004482.1| - 1.9e-38 132.3 0.0 2.2e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|312137145|ref|YP_004004482.1| - 1.3e-11 43.8 0.0 6.6e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|312137145|ref|YP_004004482.1| - 9.9e-07 28.1 0.0 3.6e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|312137145|ref|YP_004004482.1| - 0.0003 19.9 0.0 0.0036 16.4 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|312137145|ref|YP_004004482.1| - 0.0021 16.4 0.0 0.0036 15.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rad51 PF08423.6 gi|312137146|ref|YP_004004483.1| - 1.1e-24 86.7 0.0 1.3e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|312137146|ref|YP_004004483.1| - 5.5e-17 61.7 0.0 7.3e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|312137146|ref|YP_004004483.1| - 1.9e-14 53.4 0.6 3.3e-14 52.7 0.4 1.3 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|312137146|ref|YP_004004483.1| - 2.5e-09 36.5 0.2 3.2e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 KaiC Zot PF05707.7 gi|312137146|ref|YP_004004483.1| - 7.2e-07 28.8 0.0 9.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|312137146|ref|YP_004004483.1| - 1.9e-06 27.4 0.3 3.7e-06 26.4 0.2 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|312137146|ref|YP_004004483.1| - 2e-06 27.6 0.3 2.8e-06 27.1 0.2 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_24 PF13479.1 gi|312137146|ref|YP_004004483.1| - 4.1e-06 26.5 0.0 7e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|312137146|ref|YP_004004483.1| - 5.3e-06 26.7 0.1 3.7e-05 24.0 0.0 2.0 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|312137146|ref|YP_004004483.1| - 2.8e-05 23.6 0.0 7.5e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|312137146|ref|YP_004004483.1| - 3.7e-05 23.7 0.0 0.0013 18.6 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|312137146|ref|YP_004004483.1| - 6.8e-05 22.4 0.0 0.0098 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF2075 PF09848.4 gi|312137146|ref|YP_004004483.1| - 9.8e-05 21.4 0.0 0.00012 21.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|312137146|ref|YP_004004483.1| - 0.0003 19.5 0.1 0.00058 18.5 0.1 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|312137146|ref|YP_004004483.1| - 0.00038 20.6 0.2 0.00084 19.5 0.2 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|312137146|ref|YP_004004483.1| - 0.0006 19.3 0.0 0.0014 18.1 0.0 1.7 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|312137146|ref|YP_004004483.1| - 0.0013 17.9 0.0 0.0024 17.1 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|312137146|ref|YP_004004483.1| - 0.0019 18.3 0.3 0.0068 16.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|312137146|ref|YP_004004483.1| - 0.0021 17.3 0.1 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.1 gi|312137146|ref|YP_004004483.1| - 0.0027 17.4 0.0 0.0058 16.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain ArsA_ATPase PF02374.10 gi|312137146|ref|YP_004004483.1| - 0.0036 16.3 0.1 0.038 13.0 0.0 2.0 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|312137146|ref|YP_004004483.1| - 0.0057 17.4 0.1 0.02 15.6 0.0 1.9 1 1 1 2 2 2 1 AAA domain DFP PF04127.10 gi|312137146|ref|YP_004004483.1| - 0.0083 15.7 0.1 0.29 10.7 0.1 2.3 1 1 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein MobB PF03205.9 gi|312137146|ref|YP_004004483.1| - 0.014 15.0 0.1 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|312137146|ref|YP_004004483.1| - 0.03 13.0 0.1 0.047 12.4 0.0 1.4 1 0 0 1 1 1 0 ArgK protein ResIII PF04851.10 gi|312137146|ref|YP_004004483.1| - 0.032 14.0 0.1 0.049 13.4 0.1 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|312137146|ref|YP_004004483.1| - 0.033 13.7 0.0 0.039 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|312137146|ref|YP_004004483.1| - 0.039 14.1 0.0 0.074 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.15 gi|312137146|ref|YP_004004483.1| - 0.047 13.3 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.6 gi|312137146|ref|YP_004004483.1| - 0.06 12.4 0.1 0.12 11.3 0.0 1.6 1 1 0 1 1 1 0 ATPase MipZ Flg_bbr_C PF06429.8 gi|312137146|ref|YP_004004483.1| - 0.071 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Flagellar basal body rod FlgEFG protein C-terminal Zeta_toxin PF06414.7 gi|312137146|ref|YP_004004483.1| - 0.13 11.3 0.1 0.3 10.1 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin DnaB_C PF03796.10 gi|312137146|ref|YP_004004483.1| - 0.19 10.6 0.8 0.79 8.5 0.0 1.9 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain Radical_SAM PF04055.16 gi|312137147|ref|YP_004004484.1| - 2.5e-20 73.2 0.0 5.6e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137147|ref|YP_004004484.1| - 0.0055 16.8 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DiS_P_DiS PF06750.8 gi|312137147|ref|YP_004004484.1| - 0.061 13.1 0.1 0.061 13.1 0.1 2.1 3 0 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain zf-C4_Topoisom PF01396.14 gi|312137147|ref|YP_004004484.1| - 0.1 12.1 0.2 0.1 12.1 0.1 4.4 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Fer4_14 PF13394.1 gi|312137147|ref|YP_004004484.1| - 0.13 12.3 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Auto_anti-p27 PF06677.7 gi|312137147|ref|YP_004004484.1| - 0.17 11.6 7.1 1.1 9.1 0.0 3.2 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|312137147|ref|YP_004004484.1| - 0.49 10.1 0.1 0.49 10.1 0.0 3.6 4 0 0 4 4 4 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|312137147|ref|YP_004004484.1| - 1.3 8.8 13.0 0.12 12.2 0.8 3.5 3 1 0 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312137147|ref|YP_004004484.1| - 3.5 7.2 15.6 0.051 13.0 2.8 3.3 3 1 1 4 4 4 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|312137147|ref|YP_004004484.1| - 6.7 6.0 14.2 0.65 9.2 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain DUF483 PF04467.7 gi|312137148|ref|YP_004004485.1| - 5.6e-39 133.1 0.5 7.7e-39 132.6 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF483) UPF0147 PF03685.8 gi|312137149|ref|YP_004004486.1| - 3.2e-35 119.8 5.3 3.5e-35 119.7 3.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Sec8_exocyst PF04048.9 gi|312137149|ref|YP_004004486.1| - 0.0095 15.5 0.4 0.016 14.8 0.3 1.4 1 0 0 1 1 1 1 Sec8 exocyst complex component specific domain DUF1886 PF09171.5 gi|312137149|ref|YP_004004486.1| - 0.011 14.8 0.3 0.012 14.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) UPF0253 PF06786.7 gi|312137149|ref|YP_004004486.1| - 0.016 15.3 0.3 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) RasGAP PF00616.14 gi|312137149|ref|YP_004004486.1| - 0.03 13.9 0.2 0.047 13.3 0.1 1.4 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase DAO PF01266.19 gi|312137150|ref|YP_004004487.1| - 3.5e-16 59.0 0.0 1.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase GMC_oxred_N PF00732.14 gi|312137150|ref|YP_004004487.1| - 4.3e-16 58.9 0.5 1.7e-14 53.7 0.2 2.9 2 1 0 2 2 2 1 GMC oxidoreductase GMC_oxred_C PF05199.8 gi|312137150|ref|YP_004004487.1| - 9e-13 48.7 0.0 2.1e-12 47.5 0.0 1.7 1 1 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.19 gi|312137150|ref|YP_004004487.1| - 2.5e-09 36.4 0.1 0.00028 19.8 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|312137150|ref|YP_004004487.1| - 3.6e-07 30.2 0.5 2.8e-05 24.1 0.3 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|312137150|ref|YP_004004487.1| - 6.5e-07 29.2 0.0 2.5e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|312137150|ref|YP_004004487.1| - 3.7e-06 26.0 0.8 0.023 13.5 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|312137150|ref|YP_004004487.1| - 7.1e-05 22.0 3.7 0.064 12.3 0.3 2.5 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.9 gi|312137150|ref|YP_004004487.1| - 7.3e-05 21.4 2.5 0.025 13.0 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|312137150|ref|YP_004004487.1| - 0.00026 20.1 0.3 0.00043 19.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|312137150|ref|YP_004004487.1| - 0.0028 16.6 0.2 0.032 13.1 0.0 2.2 3 0 0 3 3 3 1 Lycopene cyclase protein Fer4_10 PF13237.1 gi|312137150|ref|YP_004004487.1| - 0.0038 17.0 1.1 0.0085 15.8 0.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|312137150|ref|YP_004004487.1| - 0.0053 17.1 4.4 0.015 15.6 0.0 3.6 5 1 1 6 6 4 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|312137150|ref|YP_004004487.1| - 0.017 14.5 0.0 0.037 13.4 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|312137150|ref|YP_004004487.1| - 0.026 14.5 0.8 0.77 9.7 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain Fer4_2 PF12797.2 gi|312137150|ref|YP_004004487.1| - 0.089 12.7 3.3 0.22 11.5 2.3 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|312137150|ref|YP_004004487.1| - 0.13 12.2 0.0 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_6 PF12837.2 gi|312137150|ref|YP_004004487.1| - 0.54 10.2 7.9 0.2 11.5 3.3 1.9 2 0 0 2 2 1 0 4Fe-4S binding domain PMBR PF09373.5 gi|312137151|ref|YP_004004488.1| - 3.8e-15 54.9 0.2 7.6e-10 38.2 0.1 3.6 3 0 0 3 3 3 3 Pseudomurein-binding repeat Transglut_core PF01841.14 gi|312137151|ref|YP_004004488.1| - 0.0057 16.8 0.1 0.019 15.1 0.0 1.8 2 0 0 2 2 2 1 Transglutaminase-like superfamily ATP-grasp_3 PF02655.9 gi|312137153|ref|YP_004004490.1| - 2.6e-39 134.6 0.8 5.9e-39 133.5 0.3 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|312137153|ref|YP_004004490.1| - 4.2e-19 68.4 0.2 2.3e-16 59.4 0.1 2.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|312137153|ref|YP_004004490.1| - 1.9e-17 63.6 0.0 5.4e-17 62.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|312137153|ref|YP_004004490.1| - 5.6e-09 35.7 0.5 5.6e-09 35.7 0.4 2.0 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.1 gi|312137153|ref|YP_004004490.1| - 3.5e-07 29.5 2.1 0.001 18.1 0.1 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_TupA PF14305.1 gi|312137153|ref|YP_004004490.1| - 7.6e-07 28.6 0.3 2.5e-05 23.7 0.2 2.4 2 0 0 2 2 2 1 TupA-like ATPgrasp CPSase_L_D2 PF02786.12 gi|312137153|ref|YP_004004490.1| - 0.00014 21.2 0.2 0.0004 19.7 0.1 1.8 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|312137153|ref|YP_004004490.1| - 0.00035 19.9 0.0 0.0025 17.1 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|312137153|ref|YP_004004490.1| - 0.00041 19.2 1.4 0.0028 16.5 0.3 2.5 2 1 1 3 3 3 1 YheC/D like ATP-grasp Dala_Dala_lig_C PF07478.8 gi|312137153|ref|YP_004004490.1| - 0.002 17.5 0.3 0.0078 15.6 0.2 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GSH-S_ATP PF02955.11 gi|312137153|ref|YP_004004490.1| - 0.0023 17.0 1.9 0.003 16.7 0.0 2.1 3 0 0 3 3 3 1 Prokaryotic glutathione synthetase, ATP-grasp domain PYNP_C PF07831.8 gi|312137153|ref|YP_004004490.1| - 0.13 11.7 1.8 0.52 9.8 0.1 2.6 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain CPW_WPC PF09717.5 gi|312137153|ref|YP_004004490.1| - 0.14 12.7 1.2 0.32 11.6 0.8 1.6 1 0 0 1 1 1 0 Plasmodium falciparum domain of unknown function (CPW_WPC) DUF61 PF01886.11 gi|312137154|ref|YP_004004491.1| - 7.8e-41 139.0 6.9 8.8e-41 138.8 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 YqgF PF14639.1 gi|312137154|ref|YP_004004491.1| - 0.0013 18.3 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HTH_17 PF12728.2 gi|312137154|ref|YP_004004491.1| - 0.2 11.9 1.1 0.63 10.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Ni_hydr_CYTB PF01292.15 gi|312137155|ref|YP_004004492.1| - 0.074 12.4 0.0 0.074 12.4 0.0 1.0 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Phage_rep_org_N PF09681.5 gi|312137155|ref|YP_004004492.1| - 0.14 11.7 0.1 0.15 11.5 0.1 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PGPGW PF09656.5 gi|312137155|ref|YP_004004492.1| - 0.3 10.4 1.9 0.32 10.3 0.7 1.5 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF1205 PF06722.7 gi|312137156|ref|YP_004004493.1| - 0.062 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1205) CbiG_N PF11760.3 gi|312137157|ref|YP_004004494.1| - 5.8e-36 122.0 1.7 6.4e-35 118.7 0.2 2.3 1 1 1 2 2 2 2 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|312137157|ref|YP_004004494.1| - 3.5e-32 111.1 0.2 1.8e-31 108.8 0.2 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus CbiG_mid PF11761.3 gi|312137157|ref|YP_004004494.1| - 2.5e-05 24.4 0.0 5.1e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Cobalamin biosynthesis central region DbpA PF03880.10 gi|312137157|ref|YP_004004494.1| - 0.067 12.8 4.0 0.12 12.0 1.6 2.4 3 0 0 3 3 3 0 DbpA RNA binding domain dTMP_synthase PF02593.9 gi|312137157|ref|YP_004004494.1| - 0.46 9.7 3.0 0.23 10.8 0.3 1.7 2 0 0 2 2 2 0 Thymidylate synthase Aldolase_II PF00596.16 gi|312137158|ref|YP_004004495.1| - 5.7e-44 149.9 0.0 6.4e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ERCC4 PF02732.10 gi|312137159|ref|YP_004004496.1| - 5.4e-29 100.7 0.3 5.4e-28 97.5 0.0 2.5 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|312137159|ref|YP_004004496.1| - 7.5e-24 84.1 0.5 9.3e-23 80.5 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|312137159|ref|YP_004004496.1| - 9.3e-24 83.0 0.2 4.5e-23 80.9 0.0 2.4 3 0 0 3 3 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|312137159|ref|YP_004004496.1| - 1.2e-14 54.5 3.4 2.7e-14 53.3 0.0 2.8 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|312137159|ref|YP_004004496.1| - 1e-12 47.7 0.1 2.6e-12 46.4 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|312137159|ref|YP_004004496.1| - 2.4e-08 34.0 2.9 4.1e-08 33.2 0.2 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|312137159|ref|YP_004004496.1| - 9.6e-08 31.3 0.2 2.7e-07 29.8 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.11 gi|312137159|ref|YP_004004496.1| - 0.00029 20.1 0.1 0.0011 18.2 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein HHH_3 PF12836.2 gi|312137159|ref|YP_004004496.1| - 0.011 15.6 0.0 0.048 13.6 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|312137159|ref|YP_004004496.1| - 0.019 15.1 0.3 0.019 15.1 0.2 3.8 3 2 1 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold AAA_19 PF13245.1 gi|312137159|ref|YP_004004496.1| - 0.029 14.1 0.0 0.2 11.4 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain PaREP1 PF05942.6 gi|312137159|ref|YP_004004496.1| - 0.39 10.5 8.6 0.054 13.3 0.4 3.6 5 0 0 5 5 5 0 Archaeal PaREP1/PaREP8 family DUF11 PF01345.13 gi|312137161|ref|YP_004004498.1| - 2.6e-16 59.4 1.1 1e-15 57.5 0.8 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF11 Reg_prop PF07494.6 gi|312137161|ref|YP_004004498.1| - 6.5e-10 37.8 11.3 0.035 14.0 0.0 6.7 6 0 0 6 6 5 2 Two component regulator propeller NHL PF01436.16 gi|312137161|ref|YP_004004498.1| - 1.5e-05 24.6 11.8 0.0021 17.9 0.1 6.6 7 0 0 7 7 7 1 NHL repeat SBBP PF06739.6 gi|312137161|ref|YP_004004498.1| - 0.00011 21.8 18.5 0.11 12.3 0.0 6.3 6 0 0 6 6 6 2 Beta-propeller repeat SGL PF08450.7 gi|312137161|ref|YP_004004498.1| - 0.00017 21.0 4.8 0.023 14.0 1.3 3.8 2 1 1 3 3 3 1 SMP-30/Gluconolaconase/LRE-like region TRAP_beta PF05753.9 gi|312137161|ref|YP_004004498.1| - 0.00028 20.0 0.0 0.0067 15.5 0.0 2.8 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|312137161|ref|YP_004004498.1| - 0.00077 19.4 1.1 0.0043 17.0 0.1 2.8 2 0 0 2 2 2 1 CARDB Adeno_E1B_55K PF01696.12 gi|312137161|ref|YP_004004498.1| - 0.001 17.6 1.4 0.0018 16.8 1.0 1.3 1 0 0 1 1 1 1 Adenovirus EB1 55K protein / large t-antigen Beta_helix PF13229.1 gi|312137161|ref|YP_004004498.1| - 0.004 16.9 19.6 0.004 16.9 13.6 5.1 2 2 2 4 4 2 2 Right handed beta helix region NPCBM_assoc PF10633.4 gi|312137161|ref|YP_004004498.1| - 0.012 15.5 0.0 0.035 14.1 0.0 1.8 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase PQQ PF01011.16 gi|312137161|ref|YP_004004498.1| - 0.013 14.9 5.9 9.8 5.9 0.1 4.5 4 0 0 4 4 4 0 PQQ enzyme repeat Chlam_PMP PF02415.12 gi|312137161|ref|YP_004004498.1| - 0.73 10.2 42.2 1.2 9.5 2.6 8.2 9 0 0 9 9 9 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Fil_haemagg PF05594.9 gi|312137161|ref|YP_004004498.1| - 0.83 10.0 12.2 4.6 7.6 0.6 4.2 4 1 0 4 4 3 0 Haemagluttinin repeat Peptidase_C39 PF03412.10 gi|312137163|ref|YP_004004500.1| - 3.7e-33 114.1 0.1 6.4e-33 113.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.1 gi|312137163|ref|YP_004004500.1| - 9.4e-09 35.7 0.8 7.8e-07 29.5 0.0 3.0 2 1 1 3 3 3 1 Peptidase_C39 like family Phytochelatin PF05023.9 gi|312137163|ref|YP_004004500.1| - 0.0034 16.3 1.3 0.0081 15.1 0.1 2.0 2 1 0 2 2 2 1 Phytochelatin synthase DUF3335 PF11814.3 gi|312137163|ref|YP_004004500.1| - 0.0038 16.3 0.2 0.023 13.8 0.1 2.3 1 1 1 2 2 2 1 Peptidase_C39 like family Spectrin PF00435.16 gi|312137163|ref|YP_004004500.1| - 0.1 12.9 0.9 1 9.7 0.0 2.4 2 0 0 2 2 2 0 Spectrin repeat DUF95 PF01944.12 gi|312137164|ref|YP_004004501.1| - 4e-07 29.8 9.1 4e-07 29.8 6.3 2.1 2 0 0 2 2 2 1 Integral membrane protein DUF95 Claudin_2 PF13903.1 gi|312137164|ref|YP_004004501.1| - 0.0046 16.6 7.1 0.0078 15.9 0.3 2.5 2 2 0 2 2 2 1 PMP-22/EMP/MP20/Claudin tight junction Na_K-ATPase PF00287.13 gi|312137164|ref|YP_004004501.1| - 0.58 8.8 1.9 0.44 9.2 0.0 1.6 2 0 0 2 2 2 0 Sodium / potassium ATPase beta chain Cytochrome-c551 PF10643.4 gi|312137164|ref|YP_004004501.1| - 4.2 6.5 6.5 7.1 5.8 4.5 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 RNA_POL_M_15KD PF02150.11 gi|312137165|ref|YP_004004502.1| - 0.0038 16.8 1.0 0.056 13.1 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|312137165|ref|YP_004004502.1| - 0.0039 16.4 1.6 1.1 8.5 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding DUF1610 PF07754.6 gi|312137165|ref|YP_004004502.1| - 0.0057 16.7 3.5 0.5 10.5 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) DUF4379 PF14311.1 gi|312137165|ref|YP_004004502.1| - 0.013 15.3 2.0 0.028 14.2 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) TarH PF02203.10 gi|312137165|ref|YP_004004502.1| - 0.016 15.0 0.4 0.021 14.6 0.3 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue GFA PF04828.9 gi|312137165|ref|YP_004004502.1| - 0.025 14.5 2.3 0.029 14.3 0.1 1.9 1 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|312137165|ref|YP_004004502.1| - 0.026 14.8 0.3 0.037 14.3 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|312137165|ref|YP_004004502.1| - 0.026 13.7 8.4 0.17 11.1 5.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.9 gi|312137165|ref|YP_004004502.1| - 0.044 13.4 4.7 0.66 9.6 0.6 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-Mss51 PF13824.1 gi|312137165|ref|YP_004004502.1| - 0.073 12.9 0.2 0.073 12.9 0.2 1.7 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|312137165|ref|YP_004004502.1| - 0.11 12.0 3.9 2.8 7.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1433 PF07252.6 gi|312137165|ref|YP_004004502.1| - 0.11 12.7 0.6 0.14 12.4 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1433) DUF1272 PF06906.6 gi|312137165|ref|YP_004004502.1| - 0.13 12.1 0.7 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Ribosomal_L37e PF01907.14 gi|312137165|ref|YP_004004502.1| - 0.13 12.0 4.2 0.31 10.8 0.5 2.3 2 1 0 2 2 2 0 Ribosomal protein L37e DUF3169 PF11368.3 gi|312137165|ref|YP_004004502.1| - 0.16 11.1 0.3 0.2 10.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) zf-ISL3 PF14690.1 gi|312137165|ref|YP_004004502.1| - 0.2 11.7 2.2 1 9.4 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TMEM240 PF15207.1 gi|312137165|ref|YP_004004502.1| - 0.22 11.1 1.5 0.75 9.3 1.1 1.8 1 1 0 1 1 1 0 TMEM240 family zf-H2C2_2 PF13465.1 gi|312137165|ref|YP_004004502.1| - 0.26 11.6 3.3 9.4 6.7 0.1 2.5 1 1 1 2 2 2 0 Zinc-finger double domain A2L_zn_ribbon PF08792.5 gi|312137165|ref|YP_004004502.1| - 0.27 10.7 3.4 3.1 7.3 0.2 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|312137165|ref|YP_004004502.1| - 0.34 10.8 3.5 0.76 9.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Prim_Zn_Ribbon PF08273.7 gi|312137165|ref|YP_004004502.1| - 0.35 10.9 3.4 1.4 9.0 0.3 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|312137165|ref|YP_004004502.1| - 0.38 10.5 3.2 13 5.6 0.2 2.1 1 1 1 2 2 2 0 Double zinc ribbon Sgf11 PF08209.6 gi|312137165|ref|YP_004004502.1| - 0.58 9.5 3.8 10 5.5 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|312137165|ref|YP_004004502.1| - 0.6 9.8 5.6 8.9 6.0 3.9 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|312137165|ref|YP_004004502.1| - 0.75 9.5 5.6 9.1 6.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|312137165|ref|YP_004004502.1| - 0.89 9.4 5.1 11 5.9 3.7 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Coiled PF05710.7 gi|312137165|ref|YP_004004502.1| - 1 9.8 7.0 1.3 9.4 4.1 2.0 1 1 1 2 2 2 0 Coiled coil zf-NADH-PPase PF09297.6 gi|312137165|ref|YP_004004502.1| - 2 8.0 5.0 7.3 6.2 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CBFD_NFYB_HMF PF00808.18 gi|312137167|ref|YP_004004504.1| - 0.00025 21.0 0.6 0.00045 20.2 0.1 1.6 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone THP2 PF09432.5 gi|312137167|ref|YP_004004504.1| - 0.00091 19.0 1.0 0.0021 17.9 0.6 1.7 1 1 0 1 1 1 1 Tho complex subunit THP2 DUF3166 PF11365.3 gi|312137167|ref|YP_004004504.1| - 0.031 14.7 3.4 12 6.4 0.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3166) DUF677 PF05055.7 gi|312137167|ref|YP_004004504.1| - 0.09 11.4 2.4 0.11 11.1 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DivIC PF04977.10 gi|312137167|ref|YP_004004504.1| - 0.099 12.1 0.2 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 Septum formation initiator RICH PF05062.7 gi|312137167|ref|YP_004004504.1| - 0.15 12.2 2.0 2.3 8.3 0.8 2.5 1 1 1 2 2 2 0 RICH domain zf-ZPR1 PF03367.8 gi|312137168|ref|YP_004004505.1| - 3.1e-46 156.4 0.8 3.8e-46 156.1 0.6 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF258 PF03193.11 gi|312137168|ref|YP_004004505.1| - 0.0019 17.4 0.6 0.025 13.7 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF258 DnaB_C PF03796.10 gi|312137168|ref|YP_004004505.1| - 0.039 12.8 0.1 0.047 12.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain 3H PF02829.9 gi|312137169|ref|YP_004004506.1| - 2.2e-24 85.3 2.0 2.5e-24 85.1 0.1 2.0 2 0 0 2 2 2 1 3H domain AAA_17 PF13207.1 gi|312137169|ref|YP_004004506.1| - 3e-11 44.1 2.9 3e-11 44.1 2.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|312137169|ref|YP_004004506.1| - 5.2e-11 42.9 0.5 5.2e-11 42.9 0.4 2.6 1 1 2 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|312137169|ref|YP_004004506.1| - 2.6e-05 24.1 0.0 0.00012 21.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|312137169|ref|YP_004004506.1| - 0.00047 19.3 2.4 0.00089 18.3 1.7 1.5 1 1 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|312137169|ref|YP_004004506.1| - 0.00094 19.1 0.1 0.13 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Hydrolase_6 PF13344.1 gi|312137169|ref|YP_004004506.1| - 0.0019 18.0 0.0 0.0098 15.7 0.0 2.1 3 0 0 3 3 2 1 Haloacid dehalogenase-like hydrolase AAA_22 PF13401.1 gi|312137169|ref|YP_004004506.1| - 0.024 14.7 0.3 0.3 11.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain ADK PF00406.17 gi|312137169|ref|YP_004004506.1| - 0.035 13.9 0.2 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 Adenylate kinase AAA_26 PF13500.1 gi|312137169|ref|YP_004004506.1| - 0.039 13.5 0.0 0.086 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|312137169|ref|YP_004004506.1| - 0.044 13.6 0.1 0.2 11.5 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|312137169|ref|YP_004004506.1| - 0.054 13.6 0.3 0.15 12.2 0.1 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|312137169|ref|YP_004004506.1| - 0.068 13.1 0.1 0.44 10.5 0.1 2.2 2 1 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|312137169|ref|YP_004004506.1| - 0.071 13.2 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase SKI PF01202.17 gi|312137169|ref|YP_004004506.1| - 0.075 12.8 3.7 0.35 10.7 0.0 2.9 2 1 0 3 3 3 0 Shikimate kinase CbiA PF01656.18 gi|312137169|ref|YP_004004506.1| - 0.11 11.9 6.0 0.086 12.2 0.5 3.1 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cytidylate_kin2 PF13189.1 gi|312137169|ref|YP_004004506.1| - 0.87 9.4 6.4 0.26 11.1 1.5 2.4 2 1 1 3 3 3 0 Cytidylate kinase-like family Robl_LC7 PF03259.12 gi|312137170|ref|YP_004004507.1| - 8.2e-20 70.1 0.3 1e-19 69.8 0.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|312137170|ref|YP_004004507.1| - 0.077 12.6 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF473 PF04322.7 gi|312137170|ref|YP_004004507.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) Capsid_NCLDV PF04451.7 gi|312137171|ref|YP_004004508.1| - 0.052 12.5 0.1 0.065 12.2 0.1 1.1 1 0 0 1 1 1 0 Large eukaryotic DNA virus major capsid protein CbiN PF02553.10 gi|312137173|ref|YP_004004510.1| - 9.1e-26 89.6 0.1 1.1e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN DUF202 PF02656.10 gi|312137173|ref|YP_004004510.1| - 0.095 12.9 0.8 0.21 11.8 0.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) CbiQ PF02361.11 gi|312137174|ref|YP_004004511.1| - 4.7e-39 134.2 7.6 6.8e-39 133.7 5.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein AIRC PF00731.15 gi|312137175|ref|YP_004004512.1| - 2.1e-90 299.7 0.5 1.1e-48 164.2 0.1 2.0 2 0 0 2 2 2 2 AIR carboxylase N6_Mtase PF02384.11 gi|312137175|ref|YP_004004512.1| - 0.015 14.3 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Glutaredoxin PF00462.19 gi|312137175|ref|YP_004004512.1| - 0.029 14.3 1.9 2 8.4 0.0 3.3 3 0 0 3 3 3 0 Glutaredoxin M20_dimer PF07687.9 gi|312137175|ref|YP_004004512.1| - 0.15 11.8 0.6 1.7 8.4 0.0 2.4 2 1 0 2 2 2 0 Peptidase dimerisation domain Sigma54_AID PF00309.15 gi|312137175|ref|YP_004004512.1| - 0.18 11.3 0.6 0.35 10.3 0.4 1.5 1 0 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) UbiD PF01977.11 gi|312137176|ref|YP_004004513.1| - 2.4e-128 428.0 0.2 2.7e-128 427.9 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Peptidase_C31 PF05410.8 gi|312137176|ref|YP_004004513.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Porcine arterivirus-type cysteine proteinase alpha Lactamase_B_2 PF12706.2 gi|312137177|ref|YP_004004514.1| - 1.8e-11 43.9 0.1 6.9e-11 42.0 0.0 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|312137177|ref|YP_004004514.1| - 1.1e-07 31.7 0.0 1.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|312137177|ref|YP_004004514.1| - 2.9e-06 27.0 0.0 5.2e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Glyco_tranf_2_3 PF13641.1 gi|312137178|ref|YP_004004515.1| - 1.5e-39 136.1 0.0 1.9e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|312137178|ref|YP_004004515.1| - 2.5e-34 118.3 0.1 5e-34 117.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|312137178|ref|YP_004004515.1| - 4.3e-32 111.4 0.6 4.3e-32 111.4 0.4 1.9 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|312137178|ref|YP_004004515.1| - 6.2e-21 74.4 0.0 6.5e-20 71.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|312137178|ref|YP_004004515.1| - 5.1e-14 52.0 0.3 6.8e-14 51.6 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.10 gi|312137178|ref|YP_004004515.1| - 2.6e-06 26.1 8.0 0.0001 20.8 0.0 2.5 1 1 1 2 2 2 2 Chitin synthase Thioredoxin_8 PF13905.1 gi|312137178|ref|YP_004004515.1| - 0.00043 20.3 0.1 0.0011 19.0 0.1 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_tranf_2_4 PF13704.1 gi|312137178|ref|YP_004004515.1| - 0.0052 17.0 0.2 0.011 16.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Prim-Pol PF09250.6 gi|312137178|ref|YP_004004515.1| - 0.085 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal BBS2_Mid PF14783.1 gi|312137179|ref|YP_004004516.1| - 0.018 14.7 0.2 0.022 14.5 0.1 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region Radical_SAM PF04055.16 gi|312137180|ref|YP_004004517.1| - 1.4e-22 80.6 0.1 2.7e-22 79.7 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137180|ref|YP_004004517.1| - 4.1e-07 30.1 0.3 9.8e-07 28.9 0.2 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137180|ref|YP_004004517.1| - 0.009 16.0 0.3 0.009 16.0 0.2 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.2 gi|312137180|ref|YP_004004517.1| - 0.023 14.4 0.4 0.023 14.4 0.3 3.3 3 1 0 3 3 3 0 Double zinc ribbon DUF3256 PF11644.3 gi|312137180|ref|YP_004004517.1| - 0.035 13.6 0.3 0.055 12.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3256) Phage_RpbA PF10789.4 gi|312137180|ref|YP_004004517.1| - 0.057 13.2 0.0 0.18 11.6 0.0 1.8 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA Hydrolase_like PF13242.1 gi|312137180|ref|YP_004004517.1| - 0.12 12.1 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like zf-C3HC4_3 PF13920.1 gi|312137180|ref|YP_004004517.1| - 0.12 12.0 0.2 0.12 12.0 0.1 2.9 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|312137180|ref|YP_004004517.1| - 0.12 11.8 8.6 0.18 11.3 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon domain YhfH PF14149.1 gi|312137180|ref|YP_004004517.1| - 0.13 12.0 0.2 0.13 12.0 0.1 2.9 3 0 0 3 3 2 0 YhfH-like protein zf-C4_Topoisom PF01396.14 gi|312137180|ref|YP_004004517.1| - 0.16 11.4 5.7 4.2 6.9 0.2 3.2 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|312137180|ref|YP_004004517.1| - 0.4 9.9 10.0 0.73 9.1 3.1 3.7 3 1 1 4 4 4 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|312137180|ref|YP_004004517.1| - 1.6 8.4 6.4 0.28 10.9 0.2 2.8 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit AIRS PF00586.19 gi|312137181|ref|YP_004004518.1| - 4.4e-19 68.5 0.0 1.4e-18 66.8 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|312137181|ref|YP_004004518.1| - 6.9e-11 42.3 0.0 1.1e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF469 PF04320.9 gi|312137181|ref|YP_004004518.1| - 0.073 13.8 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein with unknown function (DUF469) DUF35 PF01796.12 gi|312137182|ref|YP_004004519.1| - 3.1e-21 75.3 0.0 4e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|312137182|ref|YP_004004519.1| - 1.1e-10 41.0 0.2 1.7e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.1 gi|312137182|ref|YP_004004519.1| - 0.00044 19.8 5.0 0.017 14.7 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|312137182|ref|YP_004004519.1| - 0.00048 19.6 5.3 0.021 14.4 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|312137182|ref|YP_004004519.1| - 0.0015 18.2 0.4 0.0049 16.6 0.4 1.7 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|312137182|ref|YP_004004519.1| - 0.0046 16.7 0.5 0.0071 16.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon PilZ PF07238.9 gi|312137182|ref|YP_004004519.1| - 0.02 14.9 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 PilZ domain zinc_ribbon_6 PF14599.1 gi|312137182|ref|YP_004004519.1| - 0.02 14.6 0.3 1 9.2 0.1 2.5 2 0 0 2 2 2 0 Zinc-ribbon RRN7 PF11781.3 gi|312137182|ref|YP_004004519.1| - 0.77 9.3 3.3 9.2 5.8 0.1 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|312137182|ref|YP_004004519.1| - 1.4 8.3 6.3 33 3.9 0.5 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|312137182|ref|YP_004004519.1| - 1.6 8.4 4.0 30 4.4 2.9 2.2 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|312137182|ref|YP_004004519.1| - 4.6 6.5 8.2 10 5.4 0.6 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|312137182|ref|YP_004004519.1| - 4.7 7.3 9.6 35 4.5 0.1 3.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CbiX PF01903.12 gi|312137183|ref|YP_004004520.1| - 2.5e-35 120.7 0.6 3.1e-35 120.4 0.4 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|312137183|ref|YP_004004520.1| - 3.4e-10 39.4 0.7 3.8e-10 39.2 0.5 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|312137183|ref|YP_004004520.1| - 4.1e-05 22.7 0.0 5.9e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Ferrochelatase GCD14 PF08704.5 gi|312137184|ref|YP_004004521.1| - 4.9e-34 117.9 0.0 2e-31 109.4 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|312137184|ref|YP_004004521.1| - 1.2e-10 41.2 0.0 1.5e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|312137184|ref|YP_004004521.1| - 2.3e-10 40.2 0.0 3.4e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312137184|ref|YP_004004521.1| - 1.5e-07 31.9 0.0 2.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|312137184|ref|YP_004004521.1| - 9.7e-07 28.8 0.0 2.5e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|312137184|ref|YP_004004521.1| - 2e-05 23.7 0.0 3.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|312137184|ref|YP_004004521.1| - 6.5e-05 23.7 0.0 0.00025 21.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|312137184|ref|YP_004004521.1| - 0.00075 18.9 0.0 0.0019 17.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|312137184|ref|YP_004004521.1| - 0.0015 18.8 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|312137184|ref|YP_004004521.1| - 0.0023 17.0 0.0 0.0034 16.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|312137184|ref|YP_004004521.1| - 0.0041 17.5 0.0 0.0091 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|312137184|ref|YP_004004521.1| - 0.026 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|312137184|ref|YP_004004521.1| - 0.037 13.1 0.0 0.091 11.8 0.0 1.6 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Lantibiotic_a PF14867.1 gi|312137184|ref|YP_004004521.1| - 0.062 12.5 0.0 0.35 10.1 0.0 2.1 2 0 0 2 2 2 0 Lantibiotic alpha HMGL-like PF00682.14 gi|312137185|ref|YP_004004522.1| - 6.6e-78 261.6 0.2 1.2e-77 260.8 0.1 1.5 2 0 0 2 2 2 1 HMGL-like Aconitase PF00330.15 gi|312137186|ref|YP_004004523.1| - 1.2e-90 304.2 3.7 4.7e-59 200.1 0.6 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF98 PF01947.11 gi|312137187|ref|YP_004004524.1| - 3.2e-32 111.3 0.1 3.7e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|312137187|ref|YP_004004524.1| - 0.00028 20.4 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.8 gi|312137187|ref|YP_004004524.1| - 0.00038 19.9 0.0 0.00045 19.6 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase Cu_amine_oxidN1 PF07833.6 gi|312137187|ref|YP_004004524.1| - 0.019 15.2 0.1 0.034 14.4 0.1 1.3 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain XPG_I PF00867.13 gi|312137188|ref|YP_004004525.1| - 1.4e-29 101.9 0.2 5.2e-29 100.1 0.0 2.0 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|312137188|ref|YP_004004525.1| - 1.8e-22 79.4 0.0 3.3e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|312137188|ref|YP_004004525.1| - 6.5e-06 26.3 0.6 1.3e-05 25.3 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF3391 PF11871.3 gi|312137188|ref|YP_004004525.1| - 0.017 15.3 1.8 0.087 13.0 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) AAA_11 PF13086.1 gi|312137189|ref|YP_004004526.1| - 4.6e-58 196.5 0.2 2.8e-57 194.0 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.1 gi|312137189|ref|YP_004004526.1| - 4.1e-57 192.7 0.0 7.3e-57 191.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|312137189|ref|YP_004004526.1| - 1.7e-10 40.4 0.0 5.4e-10 38.8 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_30 PF13604.1 gi|312137189|ref|YP_004004526.1| - 1.9e-10 40.6 0.0 1.2e-06 28.3 0.0 3.0 3 0 0 3 3 3 2 AAA domain ResIII PF04851.10 gi|312137189|ref|YP_004004526.1| - 1.1e-07 31.9 7.3 1.7e-07 31.2 3.1 2.5 2 1 0 2 2 1 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|312137189|ref|YP_004004526.1| - 1.2e-07 31.5 0.0 0.13 11.7 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.9 gi|312137189|ref|YP_004004526.1| - 1.3e-05 24.9 0.1 0.0054 16.3 0.0 2.7 3 0 0 3 3 2 1 Helicase PIF1 PF05970.9 gi|312137189|ref|YP_004004526.1| - 3.6e-05 22.8 0.1 0.012 14.6 0.0 2.7 3 0 0 3 3 3 1 PIF1-like helicase AAA_22 PF13401.1 gi|312137189|ref|YP_004004526.1| - 7.9e-05 22.8 2.8 0.0018 18.3 0.0 3.7 4 0 0 4 4 4 1 AAA domain T2SE PF00437.15 gi|312137189|ref|YP_004004526.1| - 0.0005 19.0 0.1 0.001 18.0 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PhoH PF02562.11 gi|312137189|ref|YP_004004526.1| - 0.00053 19.2 0.2 0.82 8.8 0.0 3.2 2 1 1 3 3 3 2 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|312137189|ref|YP_004004526.1| - 0.0024 16.5 0.1 0.0042 15.7 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|312137189|ref|YP_004004526.1| - 0.0074 15.7 2.7 0.019 14.4 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|312137189|ref|YP_004004526.1| - 0.0078 16.2 0.0 0.028 14.4 0.0 2.0 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|312137189|ref|YP_004004526.1| - 0.0084 15.8 0.5 0.0084 15.8 0.3 2.5 3 0 0 3 3 2 1 Archaeal ATPase Ribosomal_S17 PF00366.15 gi|312137189|ref|YP_004004526.1| - 0.016 15.2 2.7 1.5 8.9 0.4 3.6 3 0 0 3 3 3 0 Ribosomal protein S17 Phe_tRNA-synt_N PF02912.13 gi|312137189|ref|YP_004004526.1| - 0.019 14.6 0.3 0.089 12.5 0.2 2.1 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain UvrD-helicase PF00580.16 gi|312137189|ref|YP_004004526.1| - 0.026 13.8 2.4 0.067 12.4 0.4 2.3 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.1 gi|312137189|ref|YP_004004526.1| - 0.027 14.5 0.0 0.22 11.6 0.0 2.6 3 0 0 3 3 2 0 UvrD-like helicase C-terminal domain Zot PF05707.7 gi|312137189|ref|YP_004004526.1| - 0.039 13.4 0.1 0.18 11.2 0.0 2.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Cpn10 PF00166.16 gi|312137189|ref|YP_004004526.1| - 0.041 13.8 0.1 5.3 7.0 0.0 2.8 2 0 0 2 2 2 0 Chaperonin 10 Kd subunit Diphthamide_syn PF01866.12 gi|312137189|ref|YP_004004526.1| - 0.065 12.4 0.1 0.43 9.7 0.0 2.1 2 0 0 2 2 2 0 Putative diphthamide synthesis protein Sigma54_activat PF00158.21 gi|312137189|ref|YP_004004526.1| - 0.1 12.0 0.1 0.31 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|312137189|ref|YP_004004526.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Flavi_DEAD PF07652.9 gi|312137189|ref|YP_004004526.1| - 0.13 12.0 0.3 1.3 8.7 0.1 2.3 2 0 0 2 2 2 0 Flavivirus DEAD domain DUF2075 PF09848.4 gi|312137189|ref|YP_004004526.1| - 0.16 10.8 2.0 4.7 6.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) SMN PF06003.7 gi|312137189|ref|YP_004004526.1| - 0.21 10.6 0.0 0.4 9.7 0.0 1.4 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) DUF2119 PF09892.4 gi|312137190|ref|YP_004004527.1| - 3.7e-66 222.1 2.9 4.2e-66 221.9 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) DUF976 PF06162.7 gi|312137190|ref|YP_004004527.1| - 0.031 13.7 0.4 0.1 12.1 0.2 1.8 2 0 0 2 2 2 0 Caenorhabditis elegans protein of unknown function (DUF976) Tn7_Tnp_TnsA_N PF08722.6 gi|312137190|ref|YP_004004527.1| - 0.057 13.4 0.6 0.12 12.4 0.4 1.5 1 0 0 1 1 1 0 TnsA endonuclease N terminal AdoHcyase PF05221.12 gi|312137191|ref|YP_004004528.1| - 4.6e-64 215.9 0.0 6.7e-64 215.4 0.0 1.2 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|312137191|ref|YP_004004528.1| - 8e-55 185.1 1.2 1.5e-54 184.2 0.8 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|312137191|ref|YP_004004528.1| - 5.2e-11 42.0 0.2 9.8e-11 41.1 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|312137191|ref|YP_004004528.1| - 2e-09 37.0 0.0 3.8e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|312137191|ref|YP_004004528.1| - 0.00033 20.2 0.7 0.002 17.7 0.2 2.0 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|312137191|ref|YP_004004528.1| - 0.0023 17.8 0.2 0.0061 16.5 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.14 gi|312137191|ref|YP_004004528.1| - 0.093 11.8 0.5 0.34 9.9 0.4 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AAA PF00004.24 gi|312137192|ref|YP_004004529.1| - 9e-103 339.7 0.0 2.6e-50 170.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|312137192|ref|YP_004004529.1| - 1.3e-30 105.1 1.1 4.5e-28 97.0 0.6 3.4 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|312137192|ref|YP_004004529.1| - 7.3e-18 65.0 0.0 1.3e-08 34.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|312137192|ref|YP_004004529.1| - 2.5e-16 59.4 0.3 2.3e-08 33.3 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|312137192|ref|YP_004004529.1| - 9.3e-16 58.3 0.0 6.1e-08 32.8 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|312137192|ref|YP_004004529.1| - 5.6e-15 54.7 0.3 1.5e-14 53.3 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|312137192|ref|YP_004004529.1| - 4.1e-14 52.8 0.2 1.8e-05 24.9 0.0 3.9 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|312137192|ref|YP_004004529.1| - 6.1e-13 48.2 0.6 0.0001 21.1 0.0 3.4 3 0 0 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|312137192|ref|YP_004004529.1| - 6.8e-13 49.4 0.5 5.3e-05 24.0 0.1 3.4 3 1 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|312137192|ref|YP_004004529.1| - 1.6e-12 47.4 0.0 8e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|312137192|ref|YP_004004529.1| - 2.1e-11 43.7 1.0 0.00024 20.8 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|312137192|ref|YP_004004529.1| - 2.5e-11 43.6 0.0 0.00011 22.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|312137192|ref|YP_004004529.1| - 1.5e-10 40.5 0.0 0.00024 20.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|312137192|ref|YP_004004529.1| - 4.6e-09 35.9 2.1 0.0014 18.2 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|312137192|ref|YP_004004529.1| - 4.6e-08 32.6 0.5 0.0094 15.3 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|312137192|ref|YP_004004529.1| - 1.6e-07 31.7 0.0 0.014 15.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|312137192|ref|YP_004004529.1| - 1.9e-07 30.7 0.0 0.011 15.2 0.0 3.3 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|312137192|ref|YP_004004529.1| - 4.2e-07 30.0 0.0 0.026 14.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|312137192|ref|YP_004004529.1| - 5.9e-07 29.4 0.1 0.68 9.5 0.0 3.8 2 2 1 3 3 3 2 Archaeal ATPase Bac_DnaA PF00308.13 gi|312137192|ref|YP_004004529.1| - 6.9e-07 29.1 0.0 0.0091 15.6 0.0 3.1 2 1 0 2 2 2 2 Bacterial dnaA protein RNA_helicase PF00910.17 gi|312137192|ref|YP_004004529.1| - 7.1e-07 29.3 0.0 0.05 13.7 0.0 3.0 3 0 0 3 3 2 2 RNA helicase KaiC PF06745.8 gi|312137192|ref|YP_004004529.1| - 7.3e-07 28.5 0.9 0.26 10.3 0.0 3.8 2 1 1 3 3 3 2 KaiC Mg_chelatase PF01078.16 gi|312137192|ref|YP_004004529.1| - 1.1e-06 27.9 0.7 0.039 13.1 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|312137192|ref|YP_004004529.1| - 3.2e-06 26.7 0.0 0.042 13.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|312137192|ref|YP_004004529.1| - 3.9e-06 25.9 0.0 0.081 11.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|312137192|ref|YP_004004529.1| - 4.8e-06 26.6 0.0 0.12 12.3 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|312137192|ref|YP_004004529.1| - 6.1e-06 25.7 7.6 0.13 11.6 0.5 4.2 2 2 0 3 3 3 2 AAA domain AAA_24 PF13479.1 gi|312137192|ref|YP_004004529.1| - 1e-05 25.2 0.1 0.053 13.0 0.1 2.5 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|312137192|ref|YP_004004529.1| - 1.1e-05 25.7 0.0 0.14 12.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NB-ARC PF00931.17 gi|312137192|ref|YP_004004529.1| - 1.2e-05 24.3 0.1 0.1 11.4 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain PhoH PF02562.11 gi|312137192|ref|YP_004004529.1| - 1.9e-05 24.0 0.2 0.23 10.6 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.7 gi|312137192|ref|YP_004004529.1| - 3.3e-05 23.5 0.8 0.36 10.4 0.0 3.5 4 0 0 4 4 4 2 NACHT domain ResIII PF04851.10 gi|312137192|ref|YP_004004529.1| - 3.6e-05 23.6 0.0 0.1 12.4 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Parvo_NS1 PF01057.12 gi|312137192|ref|YP_004004529.1| - 0.00013 20.9 0.0 0.26 10.0 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|312137192|ref|YP_004004529.1| - 0.00018 20.6 0.0 0.21 10.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|312137192|ref|YP_004004529.1| - 0.00041 20.1 4.0 3.2 7.4 0.0 4.9 3 2 1 4 4 4 0 NTPase AAA_11 PF13086.1 gi|312137192|ref|YP_004004529.1| - 0.0005 19.7 0.1 0.71 9.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|312137192|ref|YP_004004529.1| - 0.00062 19.3 0.0 1.5 8.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|312137192|ref|YP_004004529.1| - 0.00066 19.2 0.0 0.9 9.0 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|312137192|ref|YP_004004529.1| - 0.00088 19.1 0.1 2.5 7.9 0.0 3.3 3 0 0 3 3 3 1 Shikimate kinase AAA_30 PF13604.1 gi|312137192|ref|YP_004004529.1| - 0.0022 17.6 0.0 1.7 8.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|312137192|ref|YP_004004529.1| - 0.0032 16.9 0.0 2 7.8 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|312137192|ref|YP_004004529.1| - 0.0046 15.7 0.0 2.7 6.7 0.0 2.7 3 0 0 3 3 3 1 AFG1-like ATPase T2SE PF00437.15 gi|312137192|ref|YP_004004529.1| - 0.006 15.5 0.0 3 6.6 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Vps4_C PF09336.5 gi|312137192|ref|YP_004004529.1| - 0.013 15.4 1.4 3.4 7.6 0.0 3.9 4 0 0 4 4 3 0 Vps4 C terminal oligomerisation domain IPT PF01745.11 gi|312137192|ref|YP_004004529.1| - 0.013 14.7 0.2 1.5 7.9 0.0 2.9 3 0 0 3 3 3 0 Isopentenyl transferase CPT PF07931.7 gi|312137192|ref|YP_004004529.1| - 0.037 13.6 0.0 4 7.0 0.0 2.8 2 1 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein cobW PF02492.14 gi|312137192|ref|YP_004004529.1| - 0.039 13.4 0.2 9.9 5.5 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Molydop_binding PF01568.16 gi|312137192|ref|YP_004004529.1| - 0.079 12.7 0.0 0.45 10.3 0.0 2.2 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain DAP3 PF10236.4 gi|312137192|ref|YP_004004529.1| - 0.09 11.6 0.0 11 4.8 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Torsin PF06309.6 gi|312137192|ref|YP_004004529.1| - 0.15 11.9 0.0 7.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_10 PF12846.2 gi|312137192|ref|YP_004004529.1| - 0.16 11.3 0.9 49 3.2 0.0 3.6 3 1 0 3 3 3 0 AAA-like domain Chlam_PMP PF02415.12 gi|312137194|ref|YP_004004531.1| - 1.6e-06 27.9 50.3 0.67 10.3 0.7 10.2 10 0 0 10 10 10 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Transglut_C PF00927.17 gi|312137194|ref|YP_004004531.1| - 0.038 14.0 0.5 0.13 12.3 0.2 2.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain DUF4354 PF14263.1 gi|312137194|ref|YP_004004531.1| - 0.039 13.6 0.8 0.13 11.9 0.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4354) Methyltransf_31 PF13847.1 gi|312137195|ref|YP_004004532.1| - 3.2e-17 62.5 0.7 5.9e-17 61.6 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312137195|ref|YP_004004532.1| - 1.1e-13 51.7 0.0 1.8e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|312137195|ref|YP_004004532.1| - 1.5e-12 47.7 0.0 2.3e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312137195|ref|YP_004004532.1| - 7.8e-11 41.6 0.0 1.3e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|312137195|ref|YP_004004532.1| - 1.4e-10 41.5 0.0 3.3e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312137195|ref|YP_004004532.1| - 1.4e-10 41.4 0.0 2.6e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|312137195|ref|YP_004004532.1| - 1.4e-09 37.3 0.0 2.6e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|312137195|ref|YP_004004532.1| - 9.9e-09 34.7 0.1 9.9e-09 34.7 0.0 1.7 2 0 0 2 2 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|312137195|ref|YP_004004532.1| - 1.5e-08 34.0 0.1 3.2e-08 32.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|312137195|ref|YP_004004532.1| - 9.5e-08 31.7 0.2 1.5e-06 27.8 0.0 2.3 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|312137195|ref|YP_004004532.1| - 1.3e-07 31.6 0.0 1.8e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312137195|ref|YP_004004532.1| - 3.1e-07 30.2 0.0 4.6e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|312137195|ref|YP_004004532.1| - 4e-07 29.3 0.0 7.4e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|312137195|ref|YP_004004532.1| - 5.8e-07 29.2 0.0 1e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|312137195|ref|YP_004004532.1| - 1.1e-06 27.6 0.2 2.2e-06 26.5 0.1 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|312137195|ref|YP_004004532.1| - 2.8e-06 26.5 0.8 4.7e-06 25.7 0.1 1.8 2 0 0 2 2 2 1 Putative methyltransferase Met_10 PF02475.11 gi|312137195|ref|YP_004004532.1| - 5.3e-06 26.1 0.1 7.5e-06 25.6 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|312137195|ref|YP_004004532.1| - 1.9e-05 23.8 1.2 8.9e-05 21.7 0.3 2.0 1 1 1 2 2 2 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|312137195|ref|YP_004004532.1| - 2.9e-05 23.3 0.1 5.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB UPF0020 PF01170.13 gi|312137195|ref|YP_004004532.1| - 0.00013 21.5 0.1 0.00036 20.1 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 FmrO PF07091.6 gi|312137195|ref|YP_004004532.1| - 0.00016 20.7 0.0 0.00026 20.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) DREV PF05219.7 gi|312137195|ref|YP_004004532.1| - 0.00061 18.7 0.0 0.0013 17.6 0.0 1.5 1 0 0 1 1 1 1 DREV methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|312137195|ref|YP_004004532.1| - 0.00074 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 NOL1/NOP2/sun family Cons_hypoth95 PF03602.10 gi|312137195|ref|YP_004004532.1| - 0.00074 18.9 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.11 gi|312137195|ref|YP_004004532.1| - 0.0017 17.3 0.2 0.0025 16.7 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_2 PF00891.13 gi|312137195|ref|YP_004004532.1| - 0.0063 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase NodS PF05401.6 gi|312137195|ref|YP_004004532.1| - 0.0077 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|312137195|ref|YP_004004532.1| - 0.009 15.6 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|312137195|ref|YP_004004532.1| - 0.015 14.3 0.1 0.015 14.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF43 DNA_methylase PF00145.12 gi|312137195|ref|YP_004004532.1| - 0.016 14.3 0.0 0.016 14.3 0.0 2.6 3 0 0 3 3 3 0 C-5 cytosine-specific DNA methylase MetW PF07021.7 gi|312137195|ref|YP_004004532.1| - 0.022 14.1 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TRM13 PF05206.9 gi|312137195|ref|YP_004004532.1| - 0.041 13.1 0.1 0.059 12.5 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase TRM13 FtsJ PF01728.14 gi|312137195|ref|YP_004004532.1| - 0.049 13.6 0.0 0.068 13.1 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.7 gi|312137195|ref|YP_004004532.1| - 0.086 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DUF4252 PF14060.1 gi|312137195|ref|YP_004004532.1| - 3.1 7.3 10.3 0.09 12.3 1.4 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4252) Fer4 PF00037.22 gi|312137196|ref|YP_004004533.1| - 1.3e-11 43.5 17.1 1.1e-07 31.1 1.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312137196|ref|YP_004004533.1| - 8.5e-09 35.1 17.2 2.6e-05 23.9 2.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain HTH_3 PF01381.17 gi|312137196|ref|YP_004004533.1| - 4.2e-08 32.9 0.0 6.1e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Fer4_9 PF13187.1 gi|312137196|ref|YP_004004533.1| - 1e-07 32.0 29.0 4.4e-06 26.8 10.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312137196|ref|YP_004004533.1| - 2e-07 30.5 15.0 0.00013 21.6 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137196|ref|YP_004004533.1| - 3.4e-07 30.5 17.2 5.6e-06 26.6 10.6 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain HTH_23 PF13384.1 gi|312137196|ref|YP_004004533.1| - 3e-06 26.7 0.1 5.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fer4_2 PF12797.2 gi|312137196|ref|YP_004004533.1| - 1.3e-05 24.7 15.2 0.0005 19.8 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain HTH_19 PF12844.2 gi|312137196|ref|YP_004004533.1| - 1.3e-05 25.1 0.1 2.3e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_8 PF13183.1 gi|312137196|ref|YP_004004533.1| - 1.7e-05 24.7 10.9 5.4e-05 23.1 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain HTH_38 PF13936.1 gi|312137196|ref|YP_004004533.1| - 2.7e-05 23.6 0.1 5.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_10 PF13237.1 gi|312137196|ref|YP_004004533.1| - 3.1e-05 23.6 17.7 7.2e-05 22.5 10.9 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312137196|ref|YP_004004533.1| - 3.2e-05 24.2 12.8 0.00024 21.3 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain HTH_37 PF13744.1 gi|312137196|ref|YP_004004533.1| - 0.0003 20.5 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|312137196|ref|YP_004004533.1| - 0.00054 19.8 0.0 0.00094 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|312137196|ref|YP_004004533.1| - 0.0011 18.2 0.1 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|312137196|ref|YP_004004533.1| - 0.0014 18.7 0.1 0.003 17.7 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Fer4_18 PF13746.1 gi|312137196|ref|YP_004004533.1| - 0.0015 18.9 19.3 0.011 16.1 3.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain HTH_psq PF05225.11 gi|312137196|ref|YP_004004533.1| - 0.0018 17.7 0.1 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Sigma70_r4_2 PF08281.7 gi|312137196|ref|YP_004004533.1| - 0.002 17.5 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|312137196|ref|YP_004004533.1| - 0.0024 18.0 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_3 PF12798.2 gi|312137196|ref|YP_004004533.1| - 0.003 17.9 4.7 0.003 17.9 3.3 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain HTH_IclR PF09339.5 gi|312137196|ref|YP_004004533.1| - 0.0051 16.3 0.0 0.0072 15.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.1 gi|312137196|ref|YP_004004533.1| - 0.01 15.9 0.4 0.05 13.8 0.3 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Fer4_16 PF13484.1 gi|312137196|ref|YP_004004533.1| - 0.016 15.9 18.7 0.019 15.7 1.9 2.8 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain HTH_Tnp_4 PF13613.1 gi|312137196|ref|YP_004004533.1| - 0.021 14.3 0.0 0.042 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_29 PF13551.1 gi|312137196|ref|YP_004004533.1| - 0.021 14.9 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.10 gi|312137196|ref|YP_004004533.1| - 0.021 14.6 0.1 0.048 13.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase NUMOD1 PF07453.8 gi|312137196|ref|YP_004004533.1| - 0.022 14.6 0.1 0.05 13.4 0.1 1.7 1 0 0 1 1 1 0 NUMOD1 domain HTH_5 PF01022.15 gi|312137196|ref|YP_004004533.1| - 0.022 14.4 0.1 0.055 13.1 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fer4_4 PF12800.2 gi|312137196|ref|YP_004004533.1| - 0.028 14.7 4.0 0.028 14.7 2.8 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain CPSase_L_D3 PF02787.14 gi|312137196|ref|YP_004004533.1| - 0.029 14.1 0.1 0.062 13.0 0.0 1.5 2 0 0 2 2 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RepB PF07506.6 gi|312137196|ref|YP_004004533.1| - 0.03 14.1 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_8 PF02954.14 gi|312137196|ref|YP_004004533.1| - 0.033 13.7 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.1 gi|312137196|ref|YP_004004533.1| - 0.036 13.8 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0175 PF03683.8 gi|312137196|ref|YP_004004533.1| - 0.039 13.4 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) Sigma70_r4 PF04545.11 gi|312137196|ref|YP_004004533.1| - 0.049 12.9 0.0 0.085 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Fer4_15 PF13459.1 gi|312137196|ref|YP_004004533.1| - 0.16 12.5 15.1 1.9 9.1 3.6 3.4 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312137196|ref|YP_004004533.1| - 0.88 10.0 15.2 0.32 11.4 3.1 3.2 3 1 1 4 4 4 0 4Fe-4S single cluster domain GCM PF03615.10 gi|312137196|ref|YP_004004533.1| - 6.9 6.2 12.1 0.2 11.2 1.0 2.1 1 1 1 2 2 2 0 GCM motif protein Fer4 PF00037.22 gi|312137197|ref|YP_004004534.1| - 2.4e-63 207.3 89.8 1.2e-08 34.1 2.8 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137197|ref|YP_004004534.1| - 1.3e-44 150.3 116.5 6.7e-12 45.5 6.2 6.0 2 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312137197|ref|YP_004004534.1| - 4.5e-39 130.7 83.2 4.3e-06 26.3 1.6 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312137197|ref|YP_004004534.1| - 2.2e-38 129.8 67.1 4.6e-09 35.9 8.3 7.5 6 1 1 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137197|ref|YP_004004534.1| - 1.2e-34 118.3 72.2 1.3e-08 34.9 8.4 5.9 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312137197|ref|YP_004004534.1| - 8.3e-34 115.2 65.6 2e-08 33.9 8.2 6.4 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137197|ref|YP_004004534.1| - 9.8e-29 99.9 65.9 4.4e-07 30.5 8.1 6.9 7 1 0 7 7 7 6 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|312137197|ref|YP_004004534.1| - 2.1e-26 90.1 84.0 0.00011 21.8 2.5 8.7 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312137197|ref|YP_004004534.1| - 2e-24 85.3 64.2 8.6e-08 32.1 3.7 5.6 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312137197|ref|YP_004004534.1| - 3.7e-16 59.4 65.8 0.004 17.6 1.5 9.4 8 2 0 8 8 8 7 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|312137197|ref|YP_004004534.1| - 5.2e-15 55.6 61.5 0.026 14.9 0.5 8.3 8 0 0 8 8 8 8 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312137197|ref|YP_004004534.1| - 3.8e-13 49.5 73.3 0.0003 21.0 7.1 6.5 2 2 7 9 9 9 8 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137197|ref|YP_004004534.1| - 2e-12 46.6 108.2 0.027 15.0 2.6 9.1 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_4 PF12800.2 gi|312137197|ref|YP_004004534.1| - 4.3e-12 45.2 90.8 0.0096 16.1 2.6 8.8 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_11 PF13247.1 gi|312137197|ref|YP_004004534.1| - 1.1e-10 41.3 48.2 0.00066 19.5 1.3 5.7 2 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312137197|ref|YP_004004534.1| - 8.2e-10 38.9 75.5 0.014 15.7 2.4 9.0 8 1 0 8 8 8 6 4Fe-4S single cluster domain Fer4 PF00037.22 gi|312137198|ref|YP_004004535.1| - 8.4e-18 63.1 13.9 4.7e-09 35.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312137198|ref|YP_004004535.1| - 7.4e-13 47.7 11.9 4.9e-07 29.3 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137198|ref|YP_004004535.1| - 2.2e-12 47.1 24.5 2.8e-09 37.2 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137198|ref|YP_004004535.1| - 2.4e-11 43.6 7.7 3.1e-11 43.3 5.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137198|ref|YP_004004535.1| - 4.3e-11 42.4 19.6 1.1e-08 34.6 6.9 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312137198|ref|YP_004004535.1| - 6.8e-10 38.8 17.3 5.3e-08 32.7 5.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137198|ref|YP_004004535.1| - 1.5e-09 38.4 8.5 8.3e-05 23.2 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|312137198|ref|YP_004004535.1| - 2.8e-09 36.3 13.7 5.7e-05 22.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|312137198|ref|YP_004004535.1| - 2.1e-07 30.6 10.2 0.0019 18.0 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137198|ref|YP_004004535.1| - 3.7e-07 30.2 22.5 0.002 18.5 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|312137198|ref|YP_004004535.1| - 2.1e-05 24.4 14.5 0.0054 16.9 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312137198|ref|YP_004004535.1| - 4.2e-05 23.8 9.1 0.026 14.9 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|312137198|ref|YP_004004535.1| - 4.8e-05 23.6 11.7 0.0011 19.2 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312137198|ref|YP_004004535.1| - 0.00019 21.2 2.9 0.00039 20.2 2.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|312137198|ref|YP_004004535.1| - 0.00097 19.6 14.6 0.063 13.8 10.0 2.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|312137198|ref|YP_004004535.1| - 0.042 13.6 3.1 3.2 7.6 0.1 2.4 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|312137198|ref|YP_004004535.1| - 0.055 13.8 13.8 2.4 8.5 9.6 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Molydop_binding PF01568.16 gi|312137199|ref|YP_004004536.1| - 1.3e-20 73.2 0.1 1.5e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|312137199|ref|YP_004004536.1| - 0.0002 21.2 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain UFD1 PF03152.9 gi|312137199|ref|YP_004004536.1| - 0.064 12.4 0.1 0.14 11.2 0.0 1.5 2 0 0 2 2 2 0 Ubiquitin fusion degradation protein UFD1 Amidohydro_3 PF07969.6 gi|312137200|ref|YP_004004537.1| - 6.4e-79 266.0 0.0 7.5e-79 265.8 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|312137200|ref|YP_004004537.1| - 9.1e-12 44.6 0.1 4.9e-11 42.2 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|312137200|ref|YP_004004537.1| - 9.6e-08 32.3 0.1 0.0026 17.8 0.1 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|312137200|ref|YP_004004537.1| - 5.5e-05 22.9 2.9 0.012 15.3 2.0 2.6 1 1 0 1 1 1 1 Amidohydrolase family DUF2226 PF09987.4 gi|312137200|ref|YP_004004537.1| - 0.17 10.9 1.6 0.21 10.6 0.1 1.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2226) GXGXG PF01493.14 gi|312137201|ref|YP_004004538.1| - 1.3e-47 161.4 27.7 3.9e-44 150.0 15.3 1.5 1 1 1 2 2 2 2 GXGXG motif Img2 PF05046.9 gi|312137201|ref|YP_004004538.1| - 0.086 13.0 1.8 5.6 7.2 0.0 3.8 2 2 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) Molybdopterin PF00384.17 gi|312137202|ref|YP_004004539.1| - 8e-15 54.5 0.0 3.5e-14 52.3 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase zf-ribbon_3 PF13248.1 gi|312137202|ref|YP_004004539.1| - 8.3 5.7 8.9 7.1 5.9 0.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain ABC_tran PF00005.22 gi|312137203|ref|YP_004004540.1| - 1.4e-35 122.5 0.0 2.6e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|312137203|ref|YP_004004540.1| - 1.1e-10 41.4 0.0 3e-10 40.0 0.0 1.8 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|312137203|ref|YP_004004540.1| - 1.6e-06 28.3 2.9 0.0032 17.4 0.5 2.5 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|312137203|ref|YP_004004540.1| - 5.6e-06 26.2 0.0 1.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|312137203|ref|YP_004004540.1| - 0.00018 20.8 0.3 0.061 12.5 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|312137203|ref|YP_004004540.1| - 0.0018 18.6 1.8 0.003 17.9 1.2 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|312137203|ref|YP_004004540.1| - 0.0054 16.6 0.1 0.028 14.3 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|312137203|ref|YP_004004540.1| - 0.0061 16.6 0.5 0.035 14.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|312137203|ref|YP_004004540.1| - 0.021 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|312137203|ref|YP_004004540.1| - 0.026 13.9 0.0 0.48 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|312137203|ref|YP_004004540.1| - 0.027 13.0 0.0 0.19 10.2 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|312137203|ref|YP_004004540.1| - 0.032 14.2 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|312137203|ref|YP_004004540.1| - 0.037 14.2 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Ribosomal_L30 PF00327.15 gi|312137203|ref|YP_004004540.1| - 0.075 12.6 0.1 0.23 11.0 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein L30p/L7e DUF258 PF03193.11 gi|312137203|ref|YP_004004540.1| - 0.076 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|312137203|ref|YP_004004540.1| - 0.1 12.3 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|312137203|ref|YP_004004540.1| - 0.12 13.2 0.2 0.43 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|312137204|ref|YP_004004541.1| - 2.3e-21 76.1 14.1 2.3e-21 76.1 9.8 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Spore_YtrH PF14034.1 gi|312137204|ref|YP_004004541.1| - 0.37 10.7 5.1 0.14 12.1 1.1 2.2 2 0 0 2 2 2 0 Sporulation protein YtrH Pex24p PF06398.6 gi|312137204|ref|YP_004004541.1| - 2.3 6.9 7.9 4.1 6.1 4.6 2.2 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin SBP_bac_11 PF13531.1 gi|312137205|ref|YP_004004542.1| - 7.9e-44 149.9 0.0 1.1e-43 149.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|312137205|ref|YP_004004542.1| - 4e-20 72.7 3.1 6.1e-20 72.1 2.2 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|312137205|ref|YP_004004542.1| - 4.8e-08 32.8 0.1 7.4e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 PBP superfamily domain SBP_bac_6 PF13343.1 gi|312137205|ref|YP_004004542.1| - 1.3e-05 24.6 0.0 3.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|312137205|ref|YP_004004542.1| - 0.00041 20.1 1.7 0.069 12.8 0.3 2.4 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|312137205|ref|YP_004004542.1| - 0.0067 15.5 0.0 0.28 10.2 0.0 2.3 2 0 0 2 2 2 1 LysR substrate binding domain PBP_like PF12727.2 gi|312137205|ref|YP_004004542.1| - 0.11 11.4 0.0 1.9 7.3 0.0 2.3 2 0 0 2 2 2 0 PBP superfamily domain DUF3124 PF11322.3 gi|312137205|ref|YP_004004542.1| - 0.12 12.2 1.1 0.27 11.1 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3124) Oxidored_nitro PF00148.14 gi|312137206|ref|YP_004004543.1| - 1.4e-90 303.8 0.0 1.5e-90 303.7 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HMGL-like PF00682.14 gi|312137207|ref|YP_004004544.1| - 1.1e-82 277.2 2.2 2.9e-82 275.8 1.5 1.7 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|312137207|ref|YP_004004544.1| - 1.2e-38 131.8 3.9 3e-38 130.6 2.7 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|312137207|ref|YP_004004544.1| - 0.02 14.2 0.0 0.072 12.3 0.0 2.0 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel PHP_C PF13263.1 gi|312137208|ref|YP_004004545.1| - 5.8e-18 64.1 0.1 1.4e-17 62.9 0.0 1.7 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|312137208|ref|YP_004004545.1| - 4.5e-16 59.1 0.1 7.5e-16 58.4 0.1 1.5 1 1 0 1 1 1 1 PHP domain tRNA-Thr_ED PF08915.6 gi|312137209|ref|YP_004004546.1| - 1e-58 197.1 0.4 3.3e-58 195.5 0.2 1.9 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|312137209|ref|YP_004004546.1| - 3.8e-22 78.6 0.7 9.8e-22 77.3 0.5 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|312137209|ref|YP_004004546.1| - 5.1e-22 77.6 3.6 2.3e-21 75.5 2.1 2.5 2 0 0 2 2 2 1 Anticodon binding domain Glycoamylase PF10091.4 gi|312137209|ref|YP_004004546.1| - 0.0084 15.1 0.0 0.015 14.3 0.0 1.4 1 0 0 1 1 1 1 Putative glucoamylase Syntaxin-6_N PF09177.6 gi|312137209|ref|YP_004004546.1| - 0.076 13.4 0.1 0.076 13.4 0.1 2.7 3 0 0 3 3 3 0 Syntaxin 6, N-terminal DUF998 PF06197.8 gi|312137210|ref|YP_004004547.1| - 0.0041 16.4 3.6 0.0041 16.4 2.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF998) FeoB_N PF02421.13 gi|312137211|ref|YP_004004548.1| - 4.8e-65 217.6 0.8 8.5e-65 216.8 0.5 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|312137211|ref|YP_004004548.1| - 4.3e-51 171.3 14.0 6.2e-33 112.9 1.6 2.8 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|312137211|ref|YP_004004548.1| - 8e-21 73.2 2.6 8e-21 73.2 1.8 3.7 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|312137211|ref|YP_004004548.1| - 6.5e-16 58.3 0.5 1.5e-15 57.1 0.3 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|312137211|ref|YP_004004548.1| - 2.3e-05 23.9 1.9 0.0014 18.0 1.3 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|312137211|ref|YP_004004548.1| - 0.00011 21.4 0.1 0.00011 21.4 0.1 1.6 2 0 0 2 2 2 1 AIG1 family SRPRB PF09439.5 gi|312137211|ref|YP_004004548.1| - 0.00017 20.8 0.5 0.00039 19.6 0.1 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|312137211|ref|YP_004004548.1| - 0.00049 19.3 0.4 0.00094 18.4 0.3 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|312137211|ref|YP_004004548.1| - 0.02 15.3 0.0 0.041 14.3 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein YokU PF14122.1 gi|312137211|ref|YP_004004548.1| - 0.097 12.4 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 YokU-like protein Dynamin_N PF00350.18 gi|312137211|ref|YP_004004548.1| - 0.17 11.7 3.6 0.23 11.2 0.1 2.5 2 1 1 3 3 3 0 Dynamin family FeoA PF04023.9 gi|312137212|ref|YP_004004549.1| - 3.4e-16 58.9 0.3 3.7e-16 58.8 0.2 1.0 1 0 0 1 1 1 1 FeoA domain GnsAB PF08178.6 gi|312137212|ref|YP_004004549.1| - 0.018 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 GnsA/GnsB family FeoA PF04023.9 gi|312137213|ref|YP_004004550.1| - 2.6e-16 59.3 0.0 3e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|312137214|ref|YP_004004551.1| - 2.3e-33 113.9 0.1 2.2e-10 40.3 0.0 3.4 3 1 0 3 3 3 3 FeoA domain DUF1967 PF09269.6 gi|312137214|ref|YP_004004551.1| - 0.00049 19.7 2.8 1.4 8.6 0.1 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF1967) DUF3404 PF11884.3 gi|312137214|ref|YP_004004551.1| - 0.089 11.6 0.1 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3404) DUF3127 PF11325.3 gi|312137214|ref|YP_004004551.1| - 0.12 12.4 1.8 0.41 10.6 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3127) DUF4203 PF13886.1 gi|312137215|ref|YP_004004552.1| - 0.0034 16.8 4.6 0.0034 16.8 3.2 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4203) Bax1-I PF01027.15 gi|312137215|ref|YP_004004552.1| - 0.032 13.8 8.3 0.085 12.4 6.1 1.4 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Polysacc_synt_3 PF13440.1 gi|312137215|ref|YP_004004552.1| - 0.077 12.4 11.8 0.079 12.4 5.3 2.0 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein DUF1129 PF06570.6 gi|312137215|ref|YP_004004552.1| - 0.13 11.5 5.2 0.21 10.9 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2938 PF11158.3 gi|312137215|ref|YP_004004552.1| - 0.18 11.1 5.5 0.99 8.7 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2938) Rhomboid PF01694.17 gi|312137215|ref|YP_004004552.1| - 0.48 10.4 7.4 0.71 9.8 5.2 1.3 1 0 0 1 1 1 0 Rhomboid family IncA PF04156.9 gi|312137215|ref|YP_004004552.1| - 1.4 8.5 23.1 0.043 13.3 8.2 2.0 2 0 0 2 2 2 0 IncA protein DUF3995 PF13160.1 gi|312137215|ref|YP_004004552.1| - 1.7 8.7 4.6 1 9.3 0.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3995) PadR PF03551.9 gi|312137216|ref|YP_004004553.1| - 2.3e-17 62.4 0.1 5.3e-17 61.3 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|312137216|ref|YP_004004553.1| - 0.00083 19.1 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|312137216|ref|YP_004004553.1| - 0.0039 17.1 0.1 0.0069 16.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Ribosomal_S19e PF01090.14 gi|312137216|ref|YP_004004553.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e DUF4364 PF14277.1 gi|312137216|ref|YP_004004553.1| - 0.038 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF655 PF04919.7 gi|312137216|ref|YP_004004553.1| - 0.042 13.5 0.0 0.53 9.9 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF655) Cdc6_C PF09079.6 gi|312137216|ref|YP_004004553.1| - 0.048 13.3 0.1 0.066 12.9 0.1 1.4 1 1 0 1 1 1 0 CDC6, C terminal DUF505 PF04458.7 gi|312137216|ref|YP_004004553.1| - 0.081 11.0 0.1 0.11 10.6 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF505) HxlR PF01638.12 gi|312137216|ref|YP_004004553.1| - 0.1 12.2 0.1 0.14 11.7 0.1 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Uteroglobin PF01099.12 gi|312137216|ref|YP_004004553.1| - 0.14 11.9 0.0 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 Uteroglobin family ABC_tran PF00005.22 gi|312137217|ref|YP_004004554.1| - 1.3e-34 119.4 0.0 2.2e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|312137217|ref|YP_004004554.1| - 1.1e-14 55.0 9.2 1.2e-11 45.1 0.2 3.1 2 1 1 3 3 3 2 AAA domain DUF4162 PF13732.1 gi|312137217|ref|YP_004004554.1| - 1.6e-06 28.4 1.9 4.2e-06 27.1 1.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|312137217|ref|YP_004004554.1| - 0.00045 19.5 3.4 0.0052 16.0 0.2 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|312137217|ref|YP_004004554.1| - 0.0039 17.0 0.0 0.029 14.2 0.0 2.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|312137217|ref|YP_004004554.1| - 0.0097 15.4 0.3 0.018 14.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF354 PF04007.7 gi|312137217|ref|YP_004004554.1| - 0.014 14.3 1.1 0.041 12.7 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF354) DUF2813 PF11398.3 gi|312137217|ref|YP_004004554.1| - 0.021 13.9 0.0 0.17 10.9 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2813) Mg_chelatase PF01078.16 gi|312137217|ref|YP_004004554.1| - 0.024 13.8 1.4 0.4 9.8 0.1 2.7 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|312137217|ref|YP_004004554.1| - 0.036 13.7 0.5 0.08 12.5 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|312137217|ref|YP_004004554.1| - 0.042 13.9 1.5 0.33 11.1 0.5 2.5 2 1 0 2 2 2 0 AAA domain DUF3244 PF11589.3 gi|312137217|ref|YP_004004554.1| - 0.16 11.7 2.0 0.26 11.0 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3244) AAA_23 PF13476.1 gi|312137217|ref|YP_004004554.1| - 1 9.6 13.6 17 5.6 9.4 2.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|312137217|ref|YP_004004554.1| - 1.1 9.5 4.6 2.2 8.4 1.4 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_3 PF12698.2 gi|312137218|ref|YP_004004555.1| - 1.1e-47 162.7 18.0 1.3e-47 162.5 12.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|312137218|ref|YP_004004555.1| - 3.1e-35 121.2 25.3 1.4e-33 115.8 10.6 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|312137218|ref|YP_004004555.1| - 1.3e-22 80.0 12.1 2e-22 79.3 8.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|312137218|ref|YP_004004555.1| - 1.9e-06 27.2 17.3 5.7e-06 25.7 7.3 2.7 2 1 1 3 3 3 2 CcmB protein DUF3385 PF11865.3 gi|312137218|ref|YP_004004555.1| - 0.083 12.8 0.9 0.15 11.9 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3385) DUF3592 PF12158.3 gi|312137218|ref|YP_004004555.1| - 0.72 9.6 4.9 36 4.1 3.4 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) Band_7 PF01145.20 gi|312137219|ref|YP_004004556.1| - 1.6e-38 132.3 5.7 1.6e-38 132.3 3.9 1.4 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|312137219|ref|YP_004004556.1| - 2.9e-07 30.2 1.1 1.1e-05 25.1 0.4 2.6 2 1 1 3 3 3 1 SPFH domain-Band 7 family Caudo_TAP PF02413.12 gi|312137219|ref|YP_004004556.1| - 0.047 13.8 0.5 0.07 13.2 0.4 1.4 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein Hexapep PF00132.19 gi|312137220|ref|YP_004004557.1| - 6.2e-21 72.9 17.5 1.4e-08 33.8 2.3 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|312137220|ref|YP_004004557.1| - 7.2e-06 25.4 15.0 0.0011 18.4 3.2 3.8 1 1 3 4 4 4 4 Hexapeptide repeat of succinyl-transferase Beta_helix PF13229.1 gi|312137220|ref|YP_004004557.1| - 0.014 15.1 1.8 0.019 14.7 1.2 1.2 1 0 0 1 1 1 0 Right handed beta helix region ATP-grasp_5 PF13549.1 gi|312137221|ref|YP_004004558.1| - 8.3e-59 198.4 0.0 1.6e-58 197.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|312137221|ref|YP_004004558.1| - 1.1e-50 170.7 0.1 3.7e-49 165.8 0.0 2.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|312137221|ref|YP_004004558.1| - 3e-28 98.3 0.1 1.5e-27 96.0 0.0 2.3 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|312137221|ref|YP_004004558.1| - 1.8e-18 66.8 0.8 6.3e-17 61.8 0.1 3.0 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|312137221|ref|YP_004004558.1| - 0.0013 18.1 0.0 0.0035 16.7 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain NAD_Gly3P_dh_N PF01210.18 gi|312137221|ref|YP_004004558.1| - 0.049 13.3 0.0 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATP-grasp_4 PF13535.1 gi|312137221|ref|YP_004004558.1| - 0.085 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Peptidase_C14 PF00656.17 gi|312137222|ref|YP_004004559.1| - 4.5e-26 92.0 0.0 6.7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Caspase domain CARDB PF07705.6 gi|312137222|ref|YP_004004559.1| - 9.2e-13 48.1 2.6 4e-10 39.6 0.1 3.7 3 0 0 3 3 3 1 CARDB Peptidase_C13 PF01650.13 gi|312137222|ref|YP_004004559.1| - 1e-05 25.0 0.7 6.8e-05 22.2 0.3 2.0 1 1 1 2 2 2 1 Peptidase C13 family PAZ_siRNAbind PF12212.3 gi|312137222|ref|YP_004004559.1| - 0.0055 16.2 0.1 0.017 14.7 0.0 1.8 1 0 0 1 1 1 1 Piwi/Argonaute/Zwille siRNA-binding domain CHAT PF12770.2 gi|312137222|ref|YP_004004559.1| - 0.027 13.6 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 CHAT domain Orn_Arg_deC_N PF02784.11 gi|312137223|ref|YP_004004560.1| - 3.6e-64 216.3 0.0 4.5e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|312137223|ref|YP_004004560.1| - 3.1e-25 88.1 0.0 4.6e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|312137223|ref|YP_004004560.1| - 2.6e-05 23.9 0.0 6.5e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain DAP_epimerase PF01678.14 gi|312137224|ref|YP_004004561.1| - 5.4e-72 239.3 1.4 4e-39 133.2 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|312137224|ref|YP_004004561.1| - 0.002 17.0 0.1 0.0094 14.8 0.0 1.8 2 0 0 2 2 2 1 Proline racemase Draxin PF15550.1 gi|312137224|ref|YP_004004561.1| - 0.1 12.2 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Draxin RGM_N PF06535.7 gi|312137224|ref|YP_004004561.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Repulsive guidance molecule (RGM) N-terminus SRP54 PF00448.17 gi|312137225|ref|YP_004004562.1| - 2.1e-76 255.7 0.0 4.5e-76 254.6 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|312137225|ref|YP_004004562.1| - 1.8e-31 108.5 1.1 1.8e-30 105.2 0.3 2.6 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|312137225|ref|YP_004004562.1| - 8.3e-19 67.4 4.2 8.3e-19 67.4 2.9 2.6 3 0 0 3 3 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|312137225|ref|YP_004004562.1| - 2e-07 30.6 0.2 8.8e-07 28.5 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|312137225|ref|YP_004004562.1| - 9.6e-06 25.5 0.0 2.4e-05 24.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|312137225|ref|YP_004004562.1| - 1e-05 26.3 0.4 6.8e-05 23.6 0.2 2.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|312137225|ref|YP_004004562.1| - 2.5e-05 23.8 1.5 0.00022 20.6 0.5 2.5 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|312137225|ref|YP_004004562.1| - 4.1e-05 23.2 0.2 0.00013 21.7 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|312137225|ref|YP_004004562.1| - 0.00023 21.1 0.0 0.0049 16.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|312137225|ref|YP_004004562.1| - 0.00031 20.6 0.5 0.00061 19.6 0.4 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.12 gi|312137225|ref|YP_004004562.1| - 0.00069 19.2 0.2 0.004 16.7 0.0 2.4 3 0 0 3 3 2 1 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|312137225|ref|YP_004004562.1| - 0.0011 18.2 0.2 0.0035 16.6 0.1 1.8 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.18 gi|312137225|ref|YP_004004562.1| - 0.0012 18.7 1.3 0.0025 17.7 0.0 2.1 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|312137225|ref|YP_004004562.1| - 0.0013 18.8 0.1 0.0043 17.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|312137225|ref|YP_004004562.1| - 0.002 17.8 0.0 0.0052 16.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain APS_kinase PF01583.15 gi|312137225|ref|YP_004004562.1| - 0.0022 17.6 0.0 0.0045 16.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|312137225|ref|YP_004004562.1| - 0.0023 17.9 0.0 0.006 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain SRPRB PF09439.5 gi|312137225|ref|YP_004004562.1| - 0.003 16.8 1.9 0.47 9.6 0.0 3.1 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit 6PF2K PF01591.13 gi|312137225|ref|YP_004004562.1| - 0.0031 16.6 0.1 0.0078 15.2 0.0 1.7 2 0 0 2 2 2 1 6-phosphofructo-2-kinase KTI12 PF08433.5 gi|312137225|ref|YP_004004562.1| - 0.0059 15.8 0.0 0.019 14.2 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|312137225|ref|YP_004004562.1| - 0.0072 16.6 1.4 0.047 14.0 0.2 2.8 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|312137225|ref|YP_004004562.1| - 0.0074 15.3 0.0 0.022 13.8 0.0 1.9 2 0 0 2 2 1 1 Zeta toxin AAA_24 PF13479.1 gi|312137225|ref|YP_004004562.1| - 0.0078 15.8 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|312137225|ref|YP_004004562.1| - 0.0089 16.2 0.4 0.1 12.8 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.15 gi|312137225|ref|YP_004004562.1| - 0.0095 14.6 0.1 0.019 13.6 0.0 1.4 1 1 0 1 1 1 1 G-protein alpha subunit AAA_5 PF07728.9 gi|312137225|ref|YP_004004562.1| - 0.015 15.0 0.2 0.21 11.3 0.1 2.6 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DAP3 PF10236.4 gi|312137225|ref|YP_004004562.1| - 0.019 13.8 0.4 0.23 10.3 0.1 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PduV-EutP PF10662.4 gi|312137225|ref|YP_004004562.1| - 0.02 14.4 0.1 5.1 6.5 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|312137225|ref|YP_004004562.1| - 0.023 14.1 0.3 0.035 13.5 0.2 1.4 1 1 0 1 1 1 0 AAA-like domain Thymidylate_kin PF02223.12 gi|312137225|ref|YP_004004562.1| - 0.024 14.0 0.7 0.071 12.4 0.0 2.2 2 0 0 2 2 1 0 Thymidylate kinase ArgK PF03308.11 gi|312137225|ref|YP_004004562.1| - 0.028 13.2 0.0 0.099 11.4 0.0 1.9 2 0 0 2 2 2 0 ArgK protein DUF2312 PF10073.4 gi|312137225|ref|YP_004004562.1| - 0.037 13.3 1.4 0.19 11.1 0.0 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) AAA_30 PF13604.1 gi|312137225|ref|YP_004004562.1| - 0.051 13.1 0.1 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain TPP_enzyme_M PF00205.17 gi|312137225|ref|YP_004004562.1| - 0.059 13.1 0.0 12 5.6 0.0 2.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain LpxK PF02606.9 gi|312137225|ref|YP_004004562.1| - 0.065 12.1 0.1 0.15 11.0 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase FtsK_SpoIIIE PF01580.13 gi|312137225|ref|YP_004004562.1| - 0.082 12.3 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|312137225|ref|YP_004004562.1| - 0.098 11.2 0.0 0.17 10.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain THUMP PF02926.12 gi|312137226|ref|YP_004004563.1| - 8.8e-14 51.6 2.6 8.8e-14 51.6 1.8 2.4 2 0 0 2 2 2 1 THUMP domain DUF836 PF05768.9 gi|312137226|ref|YP_004004563.1| - 0.012 15.8 2.9 2.6 8.3 0.3 2.9 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) zf-C4_ClpX PF06689.8 gi|312137226|ref|YP_004004563.1| - 0.16 11.4 4.2 2.2 7.8 0.4 3.4 3 0 0 3 3 3 0 ClpX C4-type zinc finger Ribosomal_L21e PF01157.13 gi|312137227|ref|YP_004004564.1| - 2.7e-27 94.4 4.8 3e-27 94.3 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|312137228|ref|YP_004004565.1| - 1.7e-11 44.1 2.7 2e-11 43.9 1.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF2532 PF10811.3 gi|312137228|ref|YP_004004565.1| - 0.18 11.6 1.2 0.21 11.4 0.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2532) Aida_N PF08910.5 gi|312137228|ref|YP_004004565.1| - 0.51 10.6 3.0 3.1 8.0 0.1 2.1 1 1 1 2 2 2 0 Aida N-terminus Phage_GP20 PF06810.6 gi|312137228|ref|YP_004004565.1| - 0.63 9.4 5.5 0.79 9.1 3.8 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 TBD PF12845.2 gi|312137228|ref|YP_004004565.1| - 0.76 9.3 3.8 0.4 10.2 0.5 2.0 2 0 0 2 2 2 0 TBD domain DUF655 PF04919.7 gi|312137229|ref|YP_004004566.1| - 1.5e-73 246.4 0.6 1.7e-73 246.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|312137229|ref|YP_004004566.1| - 4.7e-06 26.4 0.1 0.00016 21.5 0.0 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|312137229|ref|YP_004004566.1| - 3e-05 23.9 0.0 0.00037 20.4 0.0 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|312137230|ref|YP_004004567.1| - 5e-58 196.1 1.5 6.3e-58 195.8 1.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|312137230|ref|YP_004004567.1| - 6.7e-10 38.7 0.5 8.8e-10 38.3 0.3 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312137230|ref|YP_004004567.1| - 4.2e-09 36.9 0.0 7.2e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|312137230|ref|YP_004004567.1| - 1.8e-08 33.6 0.2 1.8e-08 33.6 0.2 1.6 2 0 0 2 2 2 1 Putative methyltransferase Met_10 PF02475.11 gi|312137230|ref|YP_004004567.1| - 1.9e-08 34.1 0.5 3.5e-08 33.2 0.4 1.4 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|312137230|ref|YP_004004567.1| - 1e-07 31.5 0.0 1.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|312137230|ref|YP_004004567.1| - 2e-07 30.7 0.1 5.2e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|312137230|ref|YP_004004567.1| - 3.5e-07 30.2 0.0 4.2e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312137230|ref|YP_004004567.1| - 1.8e-05 24.4 0.0 2.9e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|312137230|ref|YP_004004567.1| - 2.6e-05 23.4 0.3 5.8e-05 22.2 0.2 1.6 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.7 gi|312137230|ref|YP_004004567.1| - 0.00013 22.3 0.0 0.00028 21.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|312137230|ref|YP_004004567.1| - 0.00029 19.6 0.1 0.00029 19.6 0.1 1.5 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|312137230|ref|YP_004004567.1| - 0.00043 19.9 0.0 0.00085 18.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|312137230|ref|YP_004004567.1| - 0.0014 18.0 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|312137230|ref|YP_004004567.1| - 0.0032 16.6 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|312137230|ref|YP_004004567.1| - 0.0097 14.8 0.0 0.015 14.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_28 PF02636.12 gi|312137230|ref|YP_004004567.1| - 0.011 15.1 0.1 0.031 13.6 0.1 1.7 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.12 gi|312137230|ref|YP_004004567.1| - 0.023 13.6 0.2 0.038 12.9 0.1 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase CMAS PF02353.15 gi|312137230|ref|YP_004004567.1| - 0.046 12.8 0.0 0.081 11.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|312137230|ref|YP_004004567.1| - 0.047 12.8 0.1 0.096 11.7 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.8 gi|312137230|ref|YP_004004567.1| - 0.068 12.4 0.0 0.17 11.1 0.0 1.8 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.7 gi|312137230|ref|YP_004004567.1| - 0.13 12.7 0.0 0.37 11.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|312137231|ref|YP_004004568.1| - 2.3e-23 82.4 0.0 2.7e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|312137231|ref|YP_004004568.1| - 3.1e-16 59.3 0.2 4.2e-16 58.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|312137231|ref|YP_004004568.1| - 3.1e-16 59.4 0.0 3.8e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|312137231|ref|YP_004004568.1| - 7.1e-12 45.0 0.1 2.1e-11 43.5 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|312137231|ref|YP_004004568.1| - 2.9e-10 40.7 0.0 4.4e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312137231|ref|YP_004004568.1| - 1.1e-07 32.2 0.0 4.8e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|312137231|ref|YP_004004568.1| - 9e-07 28.6 0.0 1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|312137231|ref|YP_004004568.1| - 1.6e-05 25.2 0.0 0.0012 19.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|312137231|ref|YP_004004568.1| - 6e-05 22.5 0.0 8.6e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|312137231|ref|YP_004004568.1| - 8.5e-05 22.1 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|312137231|ref|YP_004004568.1| - 0.00036 19.3 0.4 0.00072 18.3 0.2 1.5 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase TRM PF02005.11 gi|312137231|ref|YP_004004568.1| - 0.00038 19.5 0.0 0.00063 18.7 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_23 PF13489.1 gi|312137231|ref|YP_004004568.1| - 0.00042 20.0 0.0 0.0016 18.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|312137231|ref|YP_004004568.1| - 0.00045 19.8 0.0 0.00079 19.0 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|312137231|ref|YP_004004568.1| - 0.00084 18.9 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|312137231|ref|YP_004004568.1| - 0.0021 17.1 0.0 0.0033 16.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|312137231|ref|YP_004004568.1| - 0.0036 16.5 0.0 0.0049 16.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|312137231|ref|YP_004004568.1| - 0.0044 16.1 0.0 0.027 13.5 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DUF3419 PF11899.3 gi|312137231|ref|YP_004004568.1| - 0.0054 15.5 0.1 0.028 13.1 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3419) CMAS PF02353.15 gi|312137231|ref|YP_004004568.1| - 0.013 14.6 0.0 0.041 12.9 0.0 1.7 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|312137231|ref|YP_004004568.1| - 0.016 15.5 0.0 0.038 14.3 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|312137231|ref|YP_004004568.1| - 0.016 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_10 PF05971.7 gi|312137231|ref|YP_004004568.1| - 0.027 13.6 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF890) DUF43 PF01861.11 gi|312137231|ref|YP_004004568.1| - 0.044 12.7 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 rRNA_methylase PF06962.7 gi|312137231|ref|YP_004004568.1| - 0.059 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative rRNA methylase DUF2431 PF10354.4 gi|312137231|ref|YP_004004568.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF2431) Pribosyltran PF00156.22 gi|312137232|ref|YP_004004569.1| - 5.1e-21 74.6 1.2 7.2e-21 74.2 0.7 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|312137232|ref|YP_004004569.1| - 0.00011 21.6 0.2 0.00017 20.9 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|312137232|ref|YP_004004569.1| - 0.00015 21.0 0.2 0.0002 20.6 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Diphthamide_syn PF01866.12 gi|312137233|ref|YP_004004570.1| - 3.7e-103 344.9 0.0 4.7e-103 344.6 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein ECR1_N PF14382.1 gi|312137234|ref|YP_004004571.1| - 9.6e-11 40.7 0.0 1.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region C1_1 PF00130.17 gi|312137234|ref|YP_004004571.1| - 0.14 11.9 0.6 0.22 11.2 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.8 gi|312137234|ref|YP_004004571.1| - 0.65 9.5 3.2 1.3 8.5 2.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RecR PF02132.10 gi|312137234|ref|YP_004004571.1| - 2.2 7.8 5.1 1.1 8.7 0.3 2.2 1 1 1 2 2 2 0 RecR protein zinc_ribbon_4 PF13717.1 gi|312137234|ref|YP_004004571.1| - 3 7.6 6.5 2 8.1 0.4 2.5 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|312137234|ref|YP_004004571.1| - 3.3 7.3 6.0 1.7 8.2 0.3 2.4 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_L_2 PF13656.1 gi|312137235|ref|YP_004004572.1| - 1.4e-18 66.0 0.1 1.8e-18 65.7 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|312137235|ref|YP_004004572.1| - 3e-07 29.4 0.0 2.5e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF99 PF01949.11 gi|312137236|ref|YP_004004573.1| - 3.2e-65 218.7 0.6 3.6e-65 218.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Latarcin PF10279.4 gi|312137236|ref|YP_004004573.1| - 0.0078 16.3 0.2 0.029 14.5 0.1 2.0 1 1 0 1 1 1 1 Latarcin precursor DUF2874 PF11396.3 gi|312137236|ref|YP_004004573.1| - 0.08 12.9 2.2 0.29 11.1 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2874) NUDIX PF00293.23 gi|312137237|ref|YP_004004574.1| - 1.9e-24 85.8 0.0 2.1e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|312137237|ref|YP_004004574.1| - 6.5e-08 31.9 0.0 2.2e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 NUDIX domain TFIIS_C PF01096.13 gi|312137238|ref|YP_004004575.1| - 8.1e-19 66.9 7.9 8.1e-19 66.9 5.5 3.4 4 0 0 4 4 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|312137238|ref|YP_004004575.1| - 4.6e-08 32.6 3.1 4.6e-08 32.6 2.2 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|312137238|ref|YP_004004575.1| - 1.5e-05 24.6 11.7 0.00068 19.3 2.4 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|312137238|ref|YP_004004575.1| - 7.4e-05 22.3 10.4 0.024 14.3 0.4 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|312137238|ref|YP_004004575.1| - 8.1e-05 22.4 10.4 0.037 13.9 2.2 2.6 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|312137238|ref|YP_004004575.1| - 0.0002 21.0 8.5 0.023 14.4 0.4 2.4 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|312137238|ref|YP_004004575.1| - 0.0012 18.2 17.1 0.0037 16.6 1.4 3.4 3 0 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|312137238|ref|YP_004004575.1| - 0.0094 15.1 14.4 0.027 13.6 1.6 3.1 3 1 0 3 3 3 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|312137238|ref|YP_004004575.1| - 0.017 14.8 6.2 0.17 11.7 0.2 3.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|312137238|ref|YP_004004575.1| - 0.027 14.7 7.3 0.23 11.8 0.6 3.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|312137238|ref|YP_004004575.1| - 0.031 14.2 10.5 2.7 8.0 0.1 4.1 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|312137238|ref|YP_004004575.1| - 0.034 13.9 0.5 0.034 13.9 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons Auto_anti-p27 PF06677.7 gi|312137238|ref|YP_004004575.1| - 0.061 13.0 3.7 0.061 13.0 2.6 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) VP_N-CPKC PF11475.3 gi|312137238|ref|YP_004004575.1| - 0.064 12.8 8.5 0.87 9.1 0.1 3.1 3 0 0 3 3 3 0 Virion protein N terminal domain HypA PF01155.14 gi|312137238|ref|YP_004004575.1| - 0.26 10.9 10.7 0.37 10.4 3.6 2.7 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|312137238|ref|YP_004004575.1| - 0.27 10.7 18.2 0.38 10.2 2.5 3.5 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3797 PF12677.2 gi|312137238|ref|YP_004004575.1| - 0.27 10.8 0.3 0.27 10.8 0.2 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF3797) UPF0547 PF10571.4 gi|312137238|ref|YP_004004575.1| - 0.28 10.8 0.1 0.28 10.8 0.1 3.6 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|312137238|ref|YP_004004575.1| - 0.31 10.6 19.2 0.55 9.8 0.4 4.2 3 1 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|312137238|ref|YP_004004575.1| - 0.48 10.1 20.2 0.73 9.5 0.6 4.2 3 1 1 4 4 4 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|312137238|ref|YP_004004575.1| - 0.48 8.0 6.4 0.19 9.3 2.7 1.6 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Cytochrom_NNT PF03264.9 gi|312137238|ref|YP_004004575.1| - 0.51 9.7 5.6 0.78 9.1 3.9 1.4 1 1 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Zn_Tnp_IS1 PF03811.8 gi|312137238|ref|YP_004004575.1| - 0.75 9.3 13.5 5.5 6.5 0.1 3.5 2 2 1 3 3 3 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|312137238|ref|YP_004004575.1| - 0.86 8.9 12.8 0.51 9.6 0.9 3.2 2 2 0 2 2 2 0 TFIIB zinc-binding Baculo_ME53 PF06061.6 gi|312137238|ref|YP_004004575.1| - 0.99 8.3 14.1 0.066 12.1 3.4 2.5 1 1 0 2 2 2 0 Baculoviridae ME53 FdhE PF04216.7 gi|312137238|ref|YP_004004575.1| - 1 9.0 8.9 0.14 11.8 1.0 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Prok-RING_1 PF14446.1 gi|312137238|ref|YP_004004575.1| - 1.2 8.8 9.8 0.68 9.7 0.8 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|312137238|ref|YP_004004575.1| - 2.5 8.0 14.0 4.4 7.2 1.1 2.9 2 1 0 2 2 2 0 IBR domain DNA_RNApol_7kD PF03604.8 gi|312137238|ref|YP_004004575.1| - 2.6 7.6 11.5 0.29 10.6 0.9 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF3716 PF12511.3 gi|312137238|ref|YP_004004575.1| - 2.9 7.5 7.5 0.61 9.7 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3716) C1_1 PF00130.17 gi|312137238|ref|YP_004004575.1| - 2.9 7.6 10.4 4.1 7.1 1.4 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|312137238|ref|YP_004004575.1| - 3.1 7.8 18.2 2.3 8.2 0.1 4.2 3 1 0 3 3 3 0 Zinc ribbon domain zf-tcix PF14952.1 gi|312137238|ref|YP_004004575.1| - 3.5 7.0 15.1 1.1 8.6 0.3 3.7 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.15 gi|312137238|ref|YP_004004575.1| - 4.4 7.2 12.3 52 3.8 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin zf-MYND PF01753.13 gi|312137238|ref|YP_004004575.1| - 4.5 7.2 12.2 14 5.6 0.7 2.8 2 2 0 2 2 2 0 MYND finger DUF1451 PF07295.6 gi|312137238|ref|YP_004004575.1| - 9.5 5.9 7.8 4.6 7.0 0.1 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1451) Transp_Tc5_C PF04236.10 gi|312137238|ref|YP_004004575.1| - 9.6 6.5 8.0 17 5.7 0.6 2.8 3 1 0 3 3 2 0 Tc5 transposase C-terminal domain zf-C2H2_4 PF13894.1 gi|312137238|ref|YP_004004575.1| - 9.6 6.8 8.4 1.3e+02 3.2 0.0 4.0 4 0 0 4 4 4 0 C2H2-type zinc finger zf-TFIIB PF13453.1 gi|312137238|ref|YP_004004575.1| - 9.8 5.4 15.6 1.4 8.1 2.2 3.3 2 2 0 2 2 2 0 Transcription factor zinc-finger DUF4179 PF13786.1 gi|312137239|ref|YP_004004576.1| - 0.011 15.9 1.9 0.25 11.5 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) DUF3317 PF11779.3 gi|312137239|ref|YP_004004576.1| - 0.046 13.1 0.2 0.084 12.3 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3317) MnhB PF04039.8 gi|312137239|ref|YP_004004576.1| - 0.08 13.0 0.2 0.095 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter PCNA_N PF00705.13 gi|312137240|ref|YP_004004577.1| - 2.5e-20 72.2 1.8 4.5e-20 71.4 0.9 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|312137240|ref|YP_004004577.1| - 1.2e-08 34.3 0.2 1.4e-08 34.1 0.1 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|312137240|ref|YP_004004577.1| - 1.7e-08 33.5 0.6 0.00054 18.8 0.1 2.6 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.10 gi|312137240|ref|YP_004004577.1| - 9.2e-07 28.8 0.1 0.00057 19.7 0.0 3.0 1 1 1 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta PF00712.14 gi|312137240|ref|YP_004004577.1| - 0.0058 16.5 6.7 0.66 9.8 1.9 2.3 1 1 1 2 2 2 2 DNA polymerase III beta subunit, N-terminal domain DUF2252 PF10009.4 gi|312137241|ref|YP_004004578.1| - 0.0074 15.2 0.3 0.011 14.6 0.2 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) RB_A PF01858.12 gi|312137241|ref|YP_004004578.1| - 0.024 14.2 0.8 0.033 13.8 0.6 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein A domain Sld5 PF05916.6 gi|312137241|ref|YP_004004578.1| - 0.05 13.9 0.9 0.084 13.1 0.6 1.4 1 0 0 1 1 1 0 GINS complex protein Sigma_reg_C PF13791.1 gi|312137241|ref|YP_004004578.1| - 3.8 7.5 8.0 12 5.9 0.2 2.2 2 0 0 2 2 2 0 Sigma factor regulator C-terminal Ribosomal_L44 PF00935.14 gi|312137242|ref|YP_004004579.1| - 5.8e-27 93.5 5.3 7.5e-27 93.1 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|312137242|ref|YP_004004579.1| - 0.00025 21.2 1.7 0.00025 21.2 1.1 2.1 2 0 0 2 2 2 1 Ribosomal protein L33 zinc_ribbon_2 PF13240.1 gi|312137242|ref|YP_004004579.1| - 0.012 15.0 1.7 1.4 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|312137242|ref|YP_004004579.1| - 0.017 14.8 0.5 0.46 10.2 0.1 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like PyrI_C PF02748.10 gi|312137242|ref|YP_004004579.1| - 0.022 14.1 1.3 1.6 8.2 0.0 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain RNHCP PF12647.2 gi|312137242|ref|YP_004004579.1| - 0.031 14.1 0.1 1.4 8.7 0.0 2.0 2 0 0 2 2 2 0 RNHCP domain zf-ribbon_3 PF13248.1 gi|312137242|ref|YP_004004579.1| - 0.035 13.3 0.9 3.2 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_jaz PF12171.3 gi|312137242|ref|YP_004004579.1| - 0.044 13.9 4.0 0.81 9.9 0.4 2.4 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding Tnp_zf-ribbon_2 PF13842.1 gi|312137242|ref|YP_004004579.1| - 0.061 13.7 5.4 0.35 11.3 0.3 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-ISL3 PF14690.1 gi|312137242|ref|YP_004004579.1| - 0.065 13.2 6.5 1.9 8.6 0.7 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|312137242|ref|YP_004004579.1| - 0.087 12.7 2.2 0.97 9.4 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|312137242|ref|YP_004004579.1| - 0.11 12.8 0.4 0.21 11.9 0.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.1 gi|312137242|ref|YP_004004579.1| - 0.11 12.3 1.0 0.29 11.0 0.7 1.7 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-BED PF02892.10 gi|312137242|ref|YP_004004579.1| - 0.12 12.1 3.8 3.1 7.6 0.2 2.2 2 0 0 2 2 2 0 BED zinc finger DZR PF12773.2 gi|312137242|ref|YP_004004579.1| - 0.14 11.9 4.0 0.5 10.2 2.8 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|312137242|ref|YP_004004579.1| - 0.14 12.4 5.7 5 7.6 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|312137242|ref|YP_004004579.1| - 0.24 11.8 3.2 2.5 8.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS91 PF14319.1 gi|312137242|ref|YP_004004579.1| - 0.25 10.8 2.8 0.89 9.0 0.3 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-C2H2 PF00096.21 gi|312137242|ref|YP_004004579.1| - 0.29 11.5 5.7 5.9 7.4 0.3 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ribosomal_S14 PF00253.16 gi|312137242|ref|YP_004004579.1| - 0.71 9.2 4.8 0.17 11.3 0.4 2.1 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|312137242|ref|YP_004004579.1| - 2.1 8.1 7.9 2.9 7.7 0.1 2.6 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|312137243|ref|YP_004004580.1| - 2.6e-24 84.5 1.7 2.8e-24 84.4 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|312137243|ref|YP_004004580.1| - 0.00072 18.8 0.3 0.00092 18.4 0.2 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|312137243|ref|YP_004004580.1| - 0.0055 16.3 0.1 0.0067 16.0 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.14 gi|312137243|ref|YP_004004580.1| - 0.012 15.2 0.2 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|312137243|ref|YP_004004580.1| - 0.013 14.7 0.3 3.8 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|312137243|ref|YP_004004580.1| - 0.02 14.6 2.0 2.4 7.9 0.2 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-BED PF02892.10 gi|312137243|ref|YP_004004580.1| - 0.056 13.2 1.3 0.29 10.9 0.0 2.0 1 1 1 2 2 2 0 BED zinc finger Zn-ribbon_8 PF09723.5 gi|312137243|ref|YP_004004580.1| - 0.069 13.1 0.4 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|312137243|ref|YP_004004580.1| - 0.088 12.4 0.4 2.8 7.6 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|312137243|ref|YP_004004580.1| - 0.09 12.1 2.9 0.8 9.1 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Mcm10 PF09332.6 gi|312137243|ref|YP_004004580.1| - 0.13 11.5 0.9 0.15 11.3 0.6 1.1 1 0 0 1 1 1 0 Mcm10 replication factor DNA_ligase_ZBD PF03119.11 gi|312137243|ref|YP_004004580.1| - 0.21 11.3 1.4 0.38 10.4 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|312137243|ref|YP_004004580.1| - 0.27 11.6 0.9 11 6.6 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.8 gi|312137243|ref|YP_004004580.1| - 0.29 10.6 3.3 1.3 8.5 2.3 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF951 PF06107.6 gi|312137243|ref|YP_004004580.1| - 0.66 9.5 3.1 0.95 9.0 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-trcl PF13451.1 gi|312137243|ref|YP_004004580.1| - 1.1 8.9 3.3 1.6 8.4 0.2 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain Mu-like_Com PF10122.4 gi|312137243|ref|YP_004004580.1| - 4.4 6.4 5.3 8 5.6 0.3 2.5 1 1 2 3 3 3 0 Mu-like prophage protein Com EIF_2_alpha PF07541.7 gi|312137244|ref|YP_004004581.1| - 2.9e-29 101.1 0.7 6.4e-29 99.9 0.5 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|312137244|ref|YP_004004581.1| - 4.4e-14 52.3 1.8 9.9e-14 51.1 1.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain MBT PF02820.13 gi|312137244|ref|YP_004004581.1| - 0.057 13.3 0.0 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 mbt repeat GRAS PF03514.9 gi|312137244|ref|YP_004004581.1| - 0.092 11.4 0.0 2.5 6.7 0.0 2.2 1 1 1 2 2 2 0 GRAS domain family DUF1533 PF07550.6 gi|312137244|ref|YP_004004581.1| - 0.49 10.4 5.7 5.3 7.1 1.4 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1533) Nop10p PF04135.7 gi|312137245|ref|YP_004004582.1| - 3.9e-26 90.5 2.5 4.3e-26 90.3 1.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.6 gi|312137245|ref|YP_004004582.1| - 0.00019 21.2 1.9 0.00024 20.8 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RecR PF02132.10 gi|312137245|ref|YP_004004582.1| - 0.0013 18.1 0.1 0.0016 17.8 0.1 1.1 1 0 0 1 1 1 1 RecR protein DZR PF12773.2 gi|312137245|ref|YP_004004582.1| - 0.033 13.9 0.7 0.049 13.4 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|312137245|ref|YP_004004582.1| - 0.043 13.2 1.9 5.7 6.4 0.4 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C3HC4_3 PF13920.1 gi|312137245|ref|YP_004004582.1| - 0.057 13.0 1.4 0.084 12.5 1.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.8 gi|312137245|ref|YP_004004582.1| - 0.1 10.2 0.3 0.084 10.5 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 UPF0547 PF10571.4 gi|312137245|ref|YP_004004582.1| - 0.24 11.1 3.0 3.3 7.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.1 gi|312137245|ref|YP_004004582.1| - 0.3 10.9 2.0 0.97 9.3 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|312137245|ref|YP_004004582.1| - 0.46 9.7 7.4 1.4 8.2 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|312137245|ref|YP_004004582.1| - 0.62 10.0 4.0 1.4 8.9 0.3 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-FCS PF06467.9 gi|312137245|ref|YP_004004582.1| - 0.68 9.6 4.2 3.9 7.1 0.0 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-ISL3 PF14690.1 gi|312137245|ref|YP_004004582.1| - 1 9.4 6.4 3.3 7.8 0.8 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|312137245|ref|YP_004004582.1| - 1.1 8.6 6.1 3.9 6.8 0.6 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|312137245|ref|YP_004004582.1| - 1.5 8.3 6.3 6.4 6.3 0.6 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|312137245|ref|YP_004004582.1| - 2.1 8.0 5.4 1.8 8.2 0.3 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|312137245|ref|YP_004004582.1| - 2.4 7.9 7.7 4.3 7.1 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.1 gi|312137245|ref|YP_004004582.1| - 6.6 6.3 8.2 1.6e+02 1.9 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.1 gi|312137245|ref|YP_004004582.1| - 8 5.8 6.7 19 4.6 0.4 2.4 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PAC2 PF09754.4 gi|312137246|ref|YP_004004583.1| - 6.9e-61 205.8 0.0 8.6e-61 205.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Ribosomal_L9_C PF03948.9 gi|312137246|ref|YP_004004583.1| - 0.01 15.9 0.4 0.05 13.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain tRNA-synt_2b PF00587.20 gi|312137246|ref|YP_004004583.1| - 0.038 13.5 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) Radical_SAM PF04055.16 gi|312137246|ref|YP_004004583.1| - 0.041 14.0 0.1 0.073 13.2 0.0 1.6 1 1 0 1 1 1 0 Radical SAM superfamily P63C PF10546.4 gi|312137246|ref|YP_004004583.1| - 0.073 13.0 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 P63C domain KR PF08659.5 gi|312137246|ref|YP_004004583.1| - 0.11 12.1 0.0 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 KR domain IMS_HHH PF11798.3 gi|312137246|ref|YP_004004583.1| - 0.38 10.9 2.1 30 4.9 0.0 3.7 3 0 0 3 3 3 0 IMS family HHH motif PHP PF02811.14 gi|312137247|ref|YP_004004584.1| - 2.1e-06 27.6 0.2 2.1e-06 27.6 0.2 1.7 2 1 0 2 2 2 1 PHP domain PHP_C PF13263.1 gi|312137247|ref|YP_004004584.1| - 0.00038 19.8 0.0 0.0019 17.6 0.0 2.0 2 0 0 2 2 2 1 PHP-associated Radical_SAM PF04055.16 gi|312137248|ref|YP_004004585.1| - 2.7e-30 105.7 0.7 1e-29 103.8 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|312137248|ref|YP_004004585.1| - 7.6e-22 77.4 0.0 1.7e-21 76.3 0.0 1.6 2 0 0 2 2 2 1 B12 binding domain Fer4_12 PF13353.1 gi|312137248|ref|YP_004004585.1| - 9.9e-05 22.4 1.4 0.00065 19.8 0.1 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137248|ref|YP_004004585.1| - 0.036 14.0 0.1 0.1 12.5 0.1 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain DNA_photolyase PF00875.13 gi|312137248|ref|YP_004004585.1| - 0.087 12.5 0.3 2.8 7.6 0.0 2.4 2 0 0 2 2 2 0 DNA photolyase Chal_sti_synt_C PF02797.10 gi|312137248|ref|YP_004004585.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain Radical_SAM PF04055.16 gi|312137249|ref|YP_004004586.1| - 2.7e-20 73.1 0.1 8.4e-20 71.5 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|312137249|ref|YP_004004586.1| - 1.6e-10 41.1 1.8 1.6e-10 41.1 1.3 3.0 4 0 0 4 4 4 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|312137249|ref|YP_004004586.1| - 3.9e-10 39.9 0.1 3.9e-10 39.9 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137249|ref|YP_004004586.1| - 5.6e-09 36.0 0.1 5.6e-09 36.0 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain TM2 PF05154.11 gi|312137249|ref|YP_004004586.1| - 0.13 12.5 0.4 0.29 11.3 0.3 1.5 1 0 0 1 1 1 0 TM2 domain BAP PF06639.6 gi|312137249|ref|YP_004004586.1| - 0.27 10.9 2.3 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Basal layer antifungal peptide (BAP) DUF3147 PF11345.3 gi|312137250|ref|YP_004004587.1| - 0.00065 19.6 7.5 0.00076 19.4 5.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) GlpM PF06942.7 gi|312137250|ref|YP_004004587.1| - 0.018 15.3 12.1 0.021 15.1 8.4 1.1 1 0 0 1 1 1 0 GlpM protein NiFeSe_Hases PF00374.14 gi|312137252|ref|YP_004004589.1| - 1.1e-64 219.0 0.6 4.9e-30 104.7 0.0 4.1 1 1 2 3 3 3 3 Nickel-dependent hydrogenase AF0941-like PF14591.1 gi|312137252|ref|YP_004004589.1| - 0.00077 19.5 0.3 1.5 8.9 0.0 2.4 2 0 0 2 2 2 2 AF0941-like HycI PF01750.13 gi|312137253|ref|YP_004004590.1| - 2.8e-32 110.9 0.1 3.5e-32 110.6 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease SWIB PF02201.13 gi|312137253|ref|YP_004004590.1| - 0.13 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 SWIB/MDM2 domain DUF1409 PF07197.7 gi|312137253|ref|YP_004004590.1| - 0.43 10.6 1.8 57 3.8 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1409) Oxidored_q6 PF01058.17 gi|312137254|ref|YP_004004591.1| - 1.9e-28 98.6 0.1 1.9e-28 98.6 0.1 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|312137254|ref|YP_004004591.1| - 4.9e-10 38.5 21.9 3.4e-05 23.2 3.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|312137254|ref|YP_004004591.1| - 1.9e-06 27.5 17.5 3.5e-06 26.7 10.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312137254|ref|YP_004004591.1| - 5.4e-06 26.6 17.4 7.6e-05 23.0 11.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312137254|ref|YP_004004591.1| - 8.8e-06 25.4 18.6 0.001 18.8 11.4 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312137254|ref|YP_004004591.1| - 1.7e-05 24.4 22.7 0.00033 20.3 2.1 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312137254|ref|YP_004004591.1| - 4e-05 23.2 1.6 4e-05 23.2 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312137254|ref|YP_004004591.1| - 8.3e-05 22.7 16.6 9.8e-05 22.5 9.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|312137254|ref|YP_004004591.1| - 0.011 16.0 0.5 0.011 16.0 0.4 3.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|312137254|ref|YP_004004591.1| - 0.034 14.4 2.1 0.034 14.4 1.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312137254|ref|YP_004004591.1| - 0.053 14.0 18.2 0.26 11.8 0.4 3.9 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|312137254|ref|YP_004004591.1| - 0.058 14.1 17.5 0.16 12.6 4.7 3.1 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|312137254|ref|YP_004004591.1| - 0.49 10.7 23.1 0.11 12.8 1.8 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312137254|ref|YP_004004591.1| - 3.3 7.7 26.4 0.13 12.3 2.9 3.3 3 1 2 5 5 5 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.8 gi|312137255|ref|YP_004004592.1| - 2e-45 154.0 0.0 2.9e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|312137255|ref|YP_004004592.1| - 2e-29 101.2 0.1 3.1e-29 100.6 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CBS PF00571.23 gi|312137256|ref|YP_004004593.1| - 3.2e-27 94.0 1.5 1.1e-12 47.4 0.1 2.0 2 0 0 2 2 2 2 CBS domain MBOAT PF03062.14 gi|312137256|ref|YP_004004593.1| - 0.037 13.1 0.0 0.044 12.8 0.0 1.1 1 0 0 1 1 1 0 MBOAT, membrane-bound O-acyltransferase family Adenylsucc_synt PF00709.16 gi|312137257|ref|YP_004004594.1| - 1.3e-99 333.7 2.8 1.1e-46 159.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Mnd1 PF03962.10 gi|312137257|ref|YP_004004594.1| - 0.095 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family LANC_like PF05147.8 gi|312137257|ref|YP_004004594.1| - 0.14 10.7 0.1 0.2 10.2 0.1 1.2 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein Phos_pyr_kin PF08543.7 gi|312137258|ref|YP_004004595.1| - 9.1e-78 260.8 0.3 1.1e-77 260.5 0.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|312137258|ref|YP_004004595.1| - 8.9e-13 48.0 0.1 1.2e-12 47.6 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|312137258|ref|YP_004004595.1| - 0.0099 15.1 0.3 0.043 13.0 0.1 2.0 1 1 1 2 2 2 1 Carbohydrate kinase CofC PF01983.11 gi|312137259|ref|YP_004004596.1| - 2.5e-81 271.7 0.2 2.9e-81 271.5 0.1 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|312137259|ref|YP_004004596.1| - 3.1e-09 37.0 0.0 4.5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|312137259|ref|YP_004004596.1| - 0.0071 15.9 0.0 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) tRNA-synt_2b PF00587.20 gi|312137261|ref|YP_004004598.1| - 7.2e-25 87.5 3.3 3.5e-24 85.2 0.2 2.8 3 0 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|312137261|ref|YP_004004598.1| - 1.5e-20 72.9 1.2 5.3e-20 71.1 0.8 2.0 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|312137261|ref|YP_004004598.1| - 8.6e-13 48.0 1.1 2.6e-12 46.4 0.5 2.0 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal PAC2 PF09754.4 gi|312137262|ref|YP_004004599.1| - 8.2e-36 123.9 0.0 1e-35 123.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PepSY PF03413.14 gi|312137263|ref|YP_004004600.1| - 0.0018 18.9 0.3 0.003 18.1 0.2 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF2188 PF09954.4 gi|312137264|ref|YP_004004601.1| - 0.051 13.4 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) TRM PF02005.11 gi|312137265|ref|YP_004004602.1| - 1.2e-131 439.1 1.3 1.4e-131 438.9 0.9 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|312137265|ref|YP_004004602.1| - 0.00018 21.1 0.1 0.00027 20.5 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|312137265|ref|YP_004004602.1| - 0.00042 19.5 0.2 0.00064 18.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|312137265|ref|YP_004004602.1| - 0.00048 19.5 0.0 0.00078 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|312137265|ref|YP_004004602.1| - 0.00052 19.6 0.1 0.001 18.6 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|312137265|ref|YP_004004602.1| - 0.0024 17.2 0.0 0.0039 16.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RNA_pol_Rpc34 PF05158.7 gi|312137265|ref|YP_004004602.1| - 0.0036 16.5 0.0 0.28 10.3 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpc34 subunit Methyltransf_16 PF10294.4 gi|312137265|ref|YP_004004602.1| - 0.0083 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase DUF43 PF01861.11 gi|312137265|ref|YP_004004602.1| - 0.011 14.6 0.6 0.039 12.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF43 HTH_36 PF13730.1 gi|312137265|ref|YP_004004602.1| - 0.049 13.7 0.1 0.27 11.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Abi PF02517.11 gi|312137266|ref|YP_004004603.1| - 2.8e-15 56.2 10.8 2.8e-15 56.2 7.5 3.4 2 1 1 3 3 3 1 CAAX protease self-immunity DUF373 PF04123.8 gi|312137266|ref|YP_004004603.1| - 0.72 8.8 16.8 0.14 11.1 4.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Ion_trans_N PF08412.5 gi|312137266|ref|YP_004004603.1| - 5 6.4 8.4 1.4 8.2 2.3 2.7 2 1 0 2 2 2 0 Ion transport protein N-terminal DegT_DnrJ_EryC1 PF01041.12 gi|312137267|ref|YP_004004604.1| - 2e-137 458.0 0.0 2.3e-137 457.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|312137267|ref|YP_004004604.1| - 4.9e-11 42.1 0.2 3.5e-10 39.3 0.2 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|312137267|ref|YP_004004604.1| - 5.7e-11 41.3 0.1 9e-11 40.6 0.1 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|312137267|ref|YP_004004604.1| - 4.1e-10 39.2 0.0 9e-10 38.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|312137267|ref|YP_004004604.1| - 3.2e-07 29.4 0.0 5.9e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V HycI PF01750.13 gi|312137268|ref|YP_004004605.1| - 1.3e-24 86.1 0.1 2.1e-24 85.5 0.0 1.3 2 0 0 2 2 2 1 Hydrogenase maturation protease Methyltransf_31 PF13847.1 gi|312137269|ref|YP_004004606.1| - 9.7e-12 44.7 0.5 1.4e-11 44.2 0.4 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|312137269|ref|YP_004004606.1| - 3.2e-09 36.1 0.0 4.2e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|312137269|ref|YP_004004606.1| - 4.7e-08 33.5 0.0 7.5e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|312137269|ref|YP_004004606.1| - 1e-05 24.6 0.3 1.5e-05 24.1 0.2 1.2 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Met_10 PF02475.11 gi|312137269|ref|YP_004004606.1| - 1.8e-05 24.4 0.3 2.6e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|312137269|ref|YP_004004606.1| - 4e-05 23.6 0.0 5.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|312137269|ref|YP_004004606.1| - 8e-05 21.8 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|312137269|ref|YP_004004606.1| - 0.00011 22.5 0.0 0.00018 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312137269|ref|YP_004004606.1| - 0.00017 20.9 0.0 0.00027 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|312137269|ref|YP_004004606.1| - 0.0042 16.2 0.8 0.0054 15.9 0.5 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DREV PF05219.7 gi|312137269|ref|YP_004004606.1| - 0.02 13.7 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase GidB PF02527.10 gi|312137269|ref|YP_004004606.1| - 0.027 13.6 0.0 0.048 12.8 0.0 1.5 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|312137269|ref|YP_004004606.1| - 0.028 14.8 0.0 0.062 13.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|312137269|ref|YP_004004606.1| - 0.037 13.3 0.2 0.06 12.6 0.0 1.4 2 0 0 2 2 2 0 Histone methylation protein DOT1 NodS PF05401.6 gi|312137269|ref|YP_004004606.1| - 0.045 13.1 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrkA_N PF02254.13 gi|312137269|ref|YP_004004606.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain NikR_C PF08753.6 gi|312137270|ref|YP_004004607.1| - 1.3e-26 92.2 3.5 1.9e-26 91.7 2.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|312137270|ref|YP_004004607.1| - 3.3e-06 26.7 0.8 1.2e-05 24.9 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PduL PF06130.7 gi|312137270|ref|YP_004004607.1| - 0.013 15.3 0.2 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 Propanediol utilisation protein PduL DUF1400 PF07176.6 gi|312137270|ref|YP_004004607.1| - 0.013 15.4 0.0 0.58 10.0 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1400) Mrr_cat PF04471.7 gi|312137270|ref|YP_004004607.1| - 0.021 14.6 0.2 6.3 6.6 0.0 2.8 1 1 2 3 3 3 0 Restriction endonuclease TA0956 PF11513.3 gi|312137270|ref|YP_004004607.1| - 0.028 14.4 0.1 0.046 13.7 0.1 1.5 1 1 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 DUF1815 PF08844.5 gi|312137270|ref|YP_004004607.1| - 0.098 12.2 0.0 0.28 10.8 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1815) Pyr_redox_2 PF07992.9 gi|312137271|ref|YP_004004608.1| - 1.8e-33 116.1 2.6 7.5e-33 114.1 1.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|312137271|ref|YP_004004608.1| - 1.1e-14 54.5 3.8 1.5e-10 41.2 0.0 3.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|312137271|ref|YP_004004608.1| - 1.3e-11 44.9 0.0 1.7e-10 41.3 0.0 2.6 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|312137271|ref|YP_004004608.1| - 1.2e-05 23.9 0.8 0.00019 20.0 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.19 gi|312137271|ref|YP_004004608.1| - 2.6e-05 23.2 2.3 0.012 14.5 0.1 3.3 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|312137271|ref|YP_004004608.1| - 3.3e-05 22.9 0.0 0.0012 17.7 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|312137271|ref|YP_004004608.1| - 6.7e-05 22.1 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|312137271|ref|YP_004004608.1| - 9.1e-05 22.4 1.4 0.0088 16.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|312137271|ref|YP_004004608.1| - 0.00012 21.0 15.1 0.089 11.6 3.9 4.2 2 2 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_dim PF02852.17 gi|312137271|ref|YP_004004608.1| - 0.0011 18.9 0.1 0.005 16.8 0.0 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K_oxygenase PF13434.1 gi|312137271|ref|YP_004004608.1| - 0.0021 17.0 0.0 0.0038 16.2 0.0 1.4 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|312137271|ref|YP_004004608.1| - 0.0039 16.3 3.9 0.1 11.6 0.3 3.1 3 0 0 3 3 3 1 Thi4 family NAD_binding_7 PF13241.1 gi|312137271|ref|YP_004004608.1| - 0.0079 16.4 2.7 0.014 15.6 0.1 2.5 2 2 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|312137271|ref|YP_004004608.1| - 0.01 14.8 0.0 0.052 12.5 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain XdhC_C PF13478.1 gi|312137271|ref|YP_004004608.1| - 0.032 14.5 0.0 0.094 13.0 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain Trp_halogenase PF04820.9 gi|312137271|ref|YP_004004608.1| - 0.073 11.6 0.1 0.29 9.7 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|312137271|ref|YP_004004608.1| - 0.074 12.8 0.1 3.3 7.4 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|312137271|ref|YP_004004608.1| - 0.33 11.0 3.6 3.1 7.8 0.0 3.2 4 0 0 4 4 4 0 Shikimate / quinate 5-dehydrogenase HupF_HypC PF01455.13 gi|312137272|ref|YP_004004609.1| - 4.2e-26 90.7 0.4 4.8e-26 90.5 0.3 1.0 1 0 0 1 1 1 1 HupF/HypC family DUF3334 PF11813.3 gi|312137272|ref|YP_004004609.1| - 0.019 14.5 0.0 0.02 14.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) TFIIE_alpha PF02002.12 gi|312137273|ref|YP_004004610.1| - 1.3e-29 101.8 6.9 2e-29 101.1 4.8 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|312137273|ref|YP_004004610.1| - 6.3e-05 22.6 0.8 0.00018 21.1 0.1 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|312137273|ref|YP_004004610.1| - 0.0029 17.6 0.0 0.0065 16.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator CRS1_YhbY PF01985.16 gi|312137273|ref|YP_004004610.1| - 0.0039 17.1 1.6 0.064 13.2 1.1 2.3 2 0 0 2 2 2 1 CRS1 / YhbY (CRM) domain HTH_9 PF08221.6 gi|312137273|ref|YP_004004610.1| - 0.0062 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.11 gi|312137273|ref|YP_004004610.1| - 0.011 15.5 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 FliS PF02561.9 gi|312137273|ref|YP_004004610.1| - 0.035 13.9 0.1 0.035 13.9 0.1 2.3 2 1 0 3 3 3 0 Flagellar protein FliS DUF2250 PF10007.4 gi|312137273|ref|YP_004004610.1| - 0.043 13.7 1.0 0.11 12.4 0.4 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HypA PF01155.14 gi|312137273|ref|YP_004004610.1| - 0.043 13.4 0.4 0.075 12.7 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|312137273|ref|YP_004004610.1| - 0.05 13.2 1.7 0.065 12.9 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Sulfolobus_pRN PF05584.6 gi|312137273|ref|YP_004004610.1| - 0.072 13.0 2.4 0.087 12.8 0.5 2.0 1 1 0 2 2 2 0 Sulfolobus plasmid regulatory protein PhnA_Zn_Ribbon PF08274.7 gi|312137273|ref|YP_004004610.1| - 0.1 12.3 0.2 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|312137273|ref|YP_004004610.1| - 0.16 11.3 6.2 0.5 9.7 0.4 2.8 1 1 1 2 2 2 0 TFIIB zinc-binding HD PF01966.17 gi|312137274|ref|YP_004004611.1| - 1.7e-16 60.3 0.3 2.3e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|312137274|ref|YP_004004611.1| - 0.00013 21.3 0.0 0.15 11.2 0.0 2.2 1 1 1 2 2 2 2 HDOD domain HD_3 PF13023.1 gi|312137274|ref|YP_004004611.1| - 0.012 15.4 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 HD domain Acetate_kinase PF00871.12 gi|312137274|ref|YP_004004611.1| - 0.073 11.5 0.1 0.11 10.9 0.1 1.2 1 0 0 1 1 1 0 Acetokinase family PUA PF01472.15 gi|312137275|ref|YP_004004612.1| - 1.4e-12 47.1 0.5 2.5e-12 46.3 0.3 1.5 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|312137275|ref|YP_004004612.1| - 3.2e-11 42.9 0.0 7.6e-11 41.7 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase HRXXH PF13933.1 gi|312137275|ref|YP_004004612.1| - 0.051 12.9 0.1 0.078 12.3 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family F420_ligase PF01996.11 gi|312137276|ref|YP_004004613.1| - 2.3e-35 121.7 0.0 3.3e-35 121.2 0.0 1.3 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase FeS PF04060.8 gi|312137277|ref|YP_004004614.1| - 1.3e-13 50.2 1.0 3e-13 49.0 0.7 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|312137278|ref|YP_004004615.1| - 4.9e-18 65.1 0.1 7.6e-18 64.5 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|312137278|ref|YP_004004615.1| - 2.7e-05 23.0 0.1 0.021 13.5 0.0 2.2 2 0 0 2 2 2 2 ArgK protein SRP54 PF00448.17 gi|312137278|ref|YP_004004615.1| - 3.9e-05 23.1 0.0 0.00016 21.1 0.0 2.2 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|312137278|ref|YP_004004615.1| - 6.7e-05 22.6 0.1 0.00014 21.5 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|312137278|ref|YP_004004615.1| - 0.00031 20.7 0.0 0.0012 18.8 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|312137278|ref|YP_004004615.1| - 0.00073 18.6 0.0 0.0015 17.6 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.5 gi|312137278|ref|YP_004004615.1| - 0.0013 17.9 0.0 0.0022 17.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CbiA PF01656.18 gi|312137278|ref|YP_004004615.1| - 0.0017 17.7 0.8 0.0057 16.0 0.4 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.4 gi|312137278|ref|YP_004004615.1| - 0.0028 16.7 0.0 0.0033 16.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|312137278|ref|YP_004004615.1| - 0.0035 17.4 0.0 0.0075 16.4 0.0 1.6 2 0 0 2 2 1 1 AAA domain ATP_bind_1 PF03029.12 gi|312137278|ref|YP_004004615.1| - 0.0044 16.5 0.1 0.02 14.4 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|312137278|ref|YP_004004615.1| - 0.0099 16.1 0.0 0.019 15.2 0.0 1.5 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|312137278|ref|YP_004004615.1| - 0.016 14.9 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|312137278|ref|YP_004004615.1| - 0.019 14.6 0.2 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|312137278|ref|YP_004004615.1| - 0.071 12.8 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|312137278|ref|YP_004004615.1| - 0.079 12.5 0.1 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|312137279|ref|YP_004004616.1| - 1.6e-15 57.6 0.3 2.9e-15 56.7 0.1 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|312137279|ref|YP_004004616.1| - 8e-07 29.3 5.8 0.015 15.2 0.0 3.3 3 1 1 4 4 3 2 AAA domain SMC_N PF02463.14 gi|312137279|ref|YP_004004616.1| - 3.3e-05 23.2 2.4 0.00098 18.4 1.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|312137279|ref|YP_004004616.1| - 5.4e-05 23.0 5.1 0.00037 20.2 3.5 2.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|312137279|ref|YP_004004616.1| - 0.00055 20.0 0.5 0.0029 17.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|312137279|ref|YP_004004616.1| - 0.001 18.3 0.4 0.78 8.9 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_10 PF12846.2 gi|312137279|ref|YP_004004616.1| - 0.0015 18.0 0.1 0.0045 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|312137279|ref|YP_004004616.1| - 0.0033 17.3 0.4 0.53 10.1 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|312137279|ref|YP_004004616.1| - 0.0035 17.6 4.4 0.01 16.1 3.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|312137279|ref|YP_004004616.1| - 0.0037 18.0 1.0 0.017 15.9 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|312137279|ref|YP_004004616.1| - 0.0071 15.8 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|312137279|ref|YP_004004616.1| - 0.011 15.4 0.5 0.039 13.6 0.0 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Hom_end_hint PF05203.11 gi|312137279|ref|YP_004004616.1| - 0.012 15.3 0.3 4.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Hom_end-associated Hint AAA_5 PF07728.9 gi|312137279|ref|YP_004004616.1| - 0.016 14.9 0.1 5.3 6.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|312137279|ref|YP_004004616.1| - 0.016 14.1 0.0 0.029 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|312137279|ref|YP_004004616.1| - 0.017 15.1 1.8 0.043 13.7 1.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|312137279|ref|YP_004004616.1| - 0.019 14.1 0.0 0.09 11.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|312137279|ref|YP_004004616.1| - 0.025 13.9 0.0 0.041 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|312137279|ref|YP_004004616.1| - 0.033 14.1 0.1 0.06 13.3 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|312137279|ref|YP_004004616.1| - 0.035 14.4 0.9 0.13 12.5 0.7 2.2 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|312137279|ref|YP_004004616.1| - 0.042 12.9 0.0 0.085 11.9 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|312137279|ref|YP_004004616.1| - 0.07 12.7 0.1 0.15 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|312137279|ref|YP_004004616.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain Nnf1 PF03980.9 gi|312137279|ref|YP_004004616.1| - 0.27 11.2 2.5 0.54 10.2 0.4 2.1 2 0 0 2 2 2 0 Nnf1 AAA PF00004.24 gi|312137279|ref|YP_004004616.1| - 0.34 11.1 2.2 5.6 7.1 0.9 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ComA PF02679.10 gi|312137280|ref|YP_004004617.1| - 2.7e-94 314.7 0.2 3e-94 314.6 0.1 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) NUMOD3 PF07460.6 gi|312137280|ref|YP_004004617.1| - 0.018 14.9 0.3 0.069 13.0 0.3 2.0 2 0 0 2 2 2 0 NUMOD3 motif (2 copies) DHquinase_I PF01487.10 gi|312137280|ref|YP_004004617.1| - 0.085 12.5 0.3 0.18 11.4 0.1 1.6 2 0 0 2 2 2 0 Type I 3-dehydroquinase Glyco_hydro_18 PF00704.23 gi|312137281|ref|YP_004004618.1| - 1.4e-10 41.1 1.9 1.7e-10 40.9 0.2 1.7 1 1 0 2 2 2 1 Glycosyl hydrolases family 18 DUF4015 PF13200.1 gi|312137281|ref|YP_004004618.1| - 3.7e-09 35.9 2.5 2.3e-08 33.3 2.0 1.9 1 1 1 2 2 2 1 Putative glycosyl hydrolase domain DUF187 PF02638.10 gi|312137281|ref|YP_004004618.1| - 7.6e-08 31.5 8.0 0.00032 19.6 0.2 3.1 1 1 2 3 3 3 3 Glycosyl hydrolase like GH101 Polysacc_synt PF01943.12 gi|312137282|ref|YP_004004619.1| - 1.7e-46 158.7 27.9 1.7e-46 158.7 19.3 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|312137282|ref|YP_004004619.1| - 2.2e-22 79.4 48.6 4.9e-21 75.0 16.8 4.4 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|312137282|ref|YP_004004619.1| - 1.1e-19 70.5 31.1 1.9e-16 60.1 8.2 4.5 2 2 2 4 4 4 3 MatE Polysacc_synt_3 PF13440.1 gi|312137282|ref|YP_004004619.1| - 9.5e-16 58.0 51.8 2.4e-15 56.6 15.7 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|312137282|ref|YP_004004619.1| - 3.2e-15 55.5 44.9 4.7e-15 54.9 31.1 1.2 1 0 0 1 1 1 1 MviN-like protein Peptidase_M24 PF00557.19 gi|312137283|ref|YP_004004620.1| - 4.6e-46 157.0 0.0 5.9e-46 156.6 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.11 gi|312137283|ref|YP_004004620.1| - 0.098 13.1 2.3 8.9 6.8 0.1 2.4 2 0 0 2 2 2 0 ATP cone domain DUF445 PF04286.7 gi|312137283|ref|YP_004004620.1| - 0.11 12.0 1.7 0.5 9.8 1.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Hjc PF01870.13 gi|312137284|ref|YP_004004621.1| - 5.8e-28 96.3 0.0 7.7e-28 95.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Dot_icm_IcmQ PF09475.5 gi|312137284|ref|YP_004004621.1| - 0.026 13.7 0.1 0.033 13.4 0.1 1.1 1 0 0 1 1 1 0 Dot/Icm secretion system protein (dot_icm_IcmQ) Methyltransf_21 PF05050.7 gi|312137285|ref|YP_004004622.1| - 2.6e-21 76.3 0.2 5e-21 75.3 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|312137285|ref|YP_004004622.1| - 2.6e-11 44.1 0.0 1.3e-10 41.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|312137285|ref|YP_004004622.1| - 6.3e-07 29.1 0.3 9.3e-07 28.6 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|312137285|ref|YP_004004622.1| - 0.00023 20.9 0.0 0.0005 19.8 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|312137285|ref|YP_004004622.1| - 0.00092 18.8 0.1 0.0016 18.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Phage_sheath_1 PF04984.9 gi|312137285|ref|YP_004004622.1| - 0.017 13.6 0.1 0.026 12.9 0.1 1.2 1 0 0 1 1 1 0 Phage tail sheath protein FKS1_dom1 PF14288.1 gi|312137285|ref|YP_004004622.1| - 0.026 14.4 0.3 0.063 13.1 0.0 1.7 2 0 0 2 2 2 0 1,3-beta-glucan synthase subunit FKS1, domain-1 GFRP PF06399.8 gi|312137285|ref|YP_004004622.1| - 0.061 12.9 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) FrhB_FdhB_C PF04432.8 gi|312137285|ref|YP_004004622.1| - 0.11 11.8 0.1 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Glycos_transf_1 PF00534.15 gi|312137286|ref|YP_004004623.1| - 1.3e-22 80.0 0.5 2.3e-22 79.1 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312137286|ref|YP_004004623.1| - 1.4e-08 34.9 0.0 2.9e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312137286|ref|YP_004004623.1| - 0.0044 16.7 0.0 0.0094 15.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 NRDD PF13597.1 gi|312137287|ref|YP_004004624.1| - 5.5e-151 503.3 0.0 7.2e-151 502.9 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|312137287|ref|YP_004004624.1| - 2.3e-12 47.1 6.8 1.9e-06 28.1 0.1 3.5 1 1 2 3 3 3 2 ATP cone domain DUF4494 PF14902.1 gi|312137287|ref|YP_004004624.1| - 0.13 11.8 2.1 0.24 10.9 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4494) Sortase PF04203.8 gi|312137288|ref|YP_004004625.1| - 4.3e-20 71.5 0.0 6.4e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Sortase family FUSC_2 PF13515.1 gi|312137288|ref|YP_004004625.1| - 0.049 13.5 2.8 0.07 13.0 0.2 2.0 2 0 0 2 2 2 0 Fusaric acid resistance protein-like O-antigen_lig PF13425.1 gi|312137288|ref|YP_004004625.1| - 0.54 10.2 6.2 3.5 7.6 2.0 2.2 2 0 0 2 2 2 0 O-antigen ligase like membrane protein AA_permease_2 PF13520.1 gi|312137288|ref|YP_004004625.1| - 3.2 6.1 9.4 2.8 6.3 1.9 2.1 2 0 0 2 2 2 0 Amino acid permease Glycos_transf_2 PF00535.21 gi|312137289|ref|YP_004004626.1| - 2.9e-30 105.1 0.1 3.7e-30 104.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137289|ref|YP_004004626.1| - 4.5e-10 39.7 0.0 5.9e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|312137289|ref|YP_004004626.1| - 1.8e-06 27.2 0.0 4.2e-06 26.0 0.0 1.6 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|312137289|ref|YP_004004626.1| - 0.00027 21.2 0.0 0.00046 20.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF3447 PF11929.3 gi|312137289|ref|YP_004004626.1| - 0.0075 16.0 0.7 0.36 10.6 0.2 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF3447) DUF374 PF04028.8 gi|312137289|ref|YP_004004626.1| - 0.042 13.1 0.0 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF374) DUF2325 PF10087.4 gi|312137289|ref|YP_004004626.1| - 0.074 12.9 0.1 0.2 11.4 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) Methylase_S PF01420.14 gi|312137289|ref|YP_004004626.1| - 9.2 6.2 8.6 20 5.1 0.2 2.6 1 1 1 2 2 2 0 Type I restriction modification DNA specificity domain UPF0104 PF03706.8 gi|312137290|ref|YP_004004627.1| - 9.1e-36 123.6 30.9 1.1e-35 123.3 21.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|312137291|ref|YP_004004628.1| - 2.9e-32 111.6 1.2 5.1e-32 110.8 0.9 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137291|ref|YP_004004628.1| - 2.5e-26 92.8 0.0 3.4e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|312137291|ref|YP_004004628.1| - 6.9e-14 51.5 1.1 1.1e-13 50.9 0.8 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|312137291|ref|YP_004004628.1| - 1.1e-11 44.8 0.0 1.6e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|312137291|ref|YP_004004628.1| - 3.8e-08 32.8 0.9 5.6e-07 29.0 0.2 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|312137291|ref|YP_004004628.1| - 0.00021 20.5 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Anp1 PF03452.9 gi|312137291|ref|YP_004004628.1| - 0.00054 19.1 0.3 0.0016 17.6 0.0 1.8 2 1 0 2 2 2 1 Anp1 GlcNAc PF11397.3 gi|312137291|ref|YP_004004628.1| - 0.025 13.7 0.1 0.034 13.2 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase (GlcNAc) Glycos_transf_1 PF00534.15 gi|312137292|ref|YP_004004629.1| - 2.5e-32 111.6 2.8 5.2e-30 104.1 0.5 3.1 3 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|312137292|ref|YP_004004629.1| - 1.9e-16 60.0 0.0 4.4e-16 58.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312137292|ref|YP_004004629.1| - 5e-14 52.6 0.0 3.4e-13 49.9 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312137292|ref|YP_004004629.1| - 2.9e-08 33.6 0.1 3e-07 30.3 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|312137292|ref|YP_004004629.1| - 0.0066 16.2 0.6 0.15 11.9 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|312137292|ref|YP_004004629.1| - 0.085 13.0 0.0 0.22 11.6 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_tranf_2_5 PF13712.1 gi|312137293|ref|YP_004004630.1| - 3e-42 144.3 0.6 2.1e-41 141.5 0.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|312137293|ref|YP_004004630.1| - 2.6e-07 30.4 0.7 5.8e-06 26.0 0.0 2.3 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137293|ref|YP_004004630.1| - 0.00014 21.7 0.0 0.0046 16.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|312137294|ref|YP_004004631.1| - 3.9e-17 62.2 0.1 8.3e-17 61.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312137294|ref|YP_004004631.1| - 2.1e-16 60.2 0.0 5.4e-16 58.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|312137294|ref|YP_004004631.1| - 1.4e-09 38.0 0.0 2.6e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|312137294|ref|YP_004004631.1| - 0.029 14.1 5.2 0.037 13.8 0.5 2.8 2 1 1 3 3 3 0 Glycosyl transferase 4-like Filamin PF00630.14 gi|312137295|ref|YP_004004632.1| - 0.088 13.3 0.3 0.088 13.3 0.2 6.7 5 2 0 6 6 6 0 Filamin/ABP280 repeat GCHY-1 PF02649.9 gi|312137295|ref|YP_004004632.1| - 3.6 6.7 7.2 0.73 9.0 0.1 2.7 3 0 0 3 3 3 0 Type I GTP cyclohydrolase folE2 PapC_N PF13954.1 gi|312137295|ref|YP_004004632.1| - 8.3 5.9 13.9 1.7 8.1 0.1 5.0 5 1 0 5 5 5 0 PapC N-terminal domain Glycos_transf_1 PF00534.15 gi|312137296|ref|YP_004004633.1| - 2.5e-35 121.4 0.2 3.6e-35 120.9 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312137296|ref|YP_004004633.1| - 1.4e-19 70.6 0.0 2.4e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|312137296|ref|YP_004004633.1| - 1.6e-12 47.8 0.0 2.3e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|312137296|ref|YP_004004633.1| - 6.1e-08 32.8 0.0 1.5e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312137296|ref|YP_004004633.1| - 1.6e-05 24.7 0.3 6.8e-05 22.6 0.2 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|312137296|ref|YP_004004633.1| - 0.00073 19.3 4.0 0.00081 19.2 1.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Sirohm_synth_M PF14824.1 gi|312137296|ref|YP_004004633.1| - 0.024 13.6 0.1 0.066 12.2 0.1 1.7 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central Glycos_transf_1 PF00534.15 gi|312137297|ref|YP_004004634.1| - 2.4e-18 66.1 1.2 2.8e-17 62.6 0.8 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|312137297|ref|YP_004004634.1| - 1.9e-14 53.9 0.0 3.6e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|312137297|ref|YP_004004634.1| - 7.1e-05 22.5 0.0 0.00024 20.8 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|312137297|ref|YP_004004634.1| - 9.7e-05 22.5 0.0 0.00017 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|312137297|ref|YP_004004634.1| - 0.00025 21.2 0.0 0.0005 20.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DHFR_1 PF00186.14 gi|312137297|ref|YP_004004634.1| - 0.016 14.8 0.0 5.4 6.5 0.0 2.4 1 1 1 2 2 2 0 Dihydrofolate reductase TPP_enzyme_M PF00205.17 gi|312137297|ref|YP_004004634.1| - 0.091 12.5 0.0 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Epimerase PF01370.16 gi|312137298|ref|YP_004004635.1| - 8.3e-55 185.7 0.0 9.9e-55 185.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|312137298|ref|YP_004004635.1| - 2.6e-15 56.1 0.0 1.1e-11 44.2 0.0 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|312137298|ref|YP_004004635.1| - 2.9e-15 55.7 0.0 4.3e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|312137298|ref|YP_004004635.1| - 9.3e-13 47.7 0.0 1.9e-12 46.6 0.0 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|312137298|ref|YP_004004635.1| - 7.8e-09 35.6 0.0 1.6e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|312137298|ref|YP_004004635.1| - 2.5e-07 29.8 0.0 4.9e-06 25.6 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|312137298|ref|YP_004004635.1| - 8.1e-06 25.9 0.0 1.4e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|312137298|ref|YP_004004635.1| - 0.00031 20.4 0.0 0.0009 18.9 0.0 1.8 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|312137298|ref|YP_004004635.1| - 0.00089 18.5 0.0 0.0019 17.5 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|312137298|ref|YP_004004635.1| - 0.0056 16.6 0.0 0.0093 15.9 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|312137298|ref|YP_004004635.1| - 0.023 13.8 0.0 0.052 12.6 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|312137298|ref|YP_004004635.1| - 0.031 13.8 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase_Csub PF13950.1 gi|312137298|ref|YP_004004635.1| - 0.038 13.9 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Glycos_transf_2 PF00535.21 gi|312137299|ref|YP_004004636.1| - 6e-27 94.3 0.1 8.6e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137299|ref|YP_004004636.1| - 5.7e-06 26.2 0.0 7.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|312137299|ref|YP_004004636.1| - 0.0006 20.0 0.0 0.00085 19.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.8 gi|312137299|ref|YP_004004636.1| - 0.0036 16.4 0.1 0.0091 15.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF374) OST3_OST6 PF04756.8 gi|312137299|ref|YP_004004636.1| - 0.016 14.8 1.6 0.024 14.1 1.1 1.2 1 0 0 1 1 1 0 OST3 / OST6 family PGM_PMM_II PF02879.11 gi|312137299|ref|YP_004004636.1| - 0.055 13.8 0.2 0.35 11.2 0.0 2.1 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Glyco_transf_21 PF13506.1 gi|312137299|ref|YP_004004636.1| - 0.07 12.4 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF373 PF04123.8 gi|312137299|ref|YP_004004636.1| - 0.14 11.1 6.9 0.022 13.7 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF2162 PF09930.4 gi|312137299|ref|YP_004004636.1| - 0.24 10.4 3.8 0.14 11.2 1.2 1.6 2 0 0 2 2 2 0 Predicted transporter (DUF2162) PepSY_TM PF03929.11 gi|312137299|ref|YP_004004636.1| - 4.4 7.8 6.7 1 9.9 1.3 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix Epimerase PF01370.16 gi|312137300|ref|YP_004004637.1| - 3.6e-46 157.5 0.4 5.8e-46 156.8 0.3 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|312137300|ref|YP_004004637.1| - 1.6e-18 66.5 0.0 6.9e-14 51.3 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|312137300|ref|YP_004004637.1| - 5.6e-18 64.6 0.0 7.7e-18 64.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|312137300|ref|YP_004004637.1| - 4.4e-16 58.6 0.0 5.5e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|312137300|ref|YP_004004637.1| - 9.3e-11 42.0 0.0 1.4e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|312137300|ref|YP_004004637.1| - 3.8e-10 39.1 0.0 3.6e-08 32.6 0.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|312137300|ref|YP_004004637.1| - 0.00039 20.3 0.0 0.0082 16.0 0.0 2.2 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|312137300|ref|YP_004004637.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.5 gi|312137300|ref|YP_004004637.1| - 0.12 11.9 0.1 0.36 10.4 0.0 1.8 1 1 0 1 1 1 0 KR domain PMT_2 PF13231.1 gi|312137301|ref|YP_004004638.1| - 1.9e-24 86.3 22.5 1.9e-24 86.3 15.6 3.6 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase COX7C PF02935.11 gi|312137301|ref|YP_004004638.1| - 0.6 9.9 4.0 1.9 8.3 2.8 1.8 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc PMT_2 PF13231.1 gi|312137302|ref|YP_004004639.1| - 8.1e-21 74.5 24.4 8.1e-21 74.5 16.9 4.1 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMBR PF09373.5 gi|312137303|ref|YP_004004640.1| - 1.8e-44 147.6 18.5 2.5e-08 33.4 0.4 9.1 9 1 0 9 9 9 6 Pseudomurein-binding repeat Transglut_core PF01841.14 gi|312137303|ref|YP_004004640.1| - 4.4e-26 91.3 6.1 2.3e-25 89.0 1.6 2.7 2 0 0 2 2 2 1 Transglutaminase-like superfamily Glyco_hydro_18 PF00704.23 gi|312137303|ref|YP_004004640.1| - 2.3e-10 40.4 0.8 4.2e-10 39.6 0.6 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 Peptidase_C71 PF12386.3 gi|312137303|ref|YP_004004640.1| - 3e-09 36.4 1.6 6.8e-09 35.3 1.1 1.6 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF187 PF02638.10 gi|312137303|ref|YP_004004640.1| - 1.2e-06 27.6 13.8 0.00067 18.6 0.2 3.3 1 1 2 3 3 3 3 Glycosyl hydrolase like GH101 DUF553 PF04473.7 gi|312137303|ref|YP_004004640.1| - 0.00037 19.7 7.9 0.02 14.1 0.2 3.4 2 1 1 3 3 3 2 Transglutaminase-like domain Tox-REase-3 PF15647.1 gi|312137303|ref|YP_004004640.1| - 0.037 13.8 1.2 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 3 Transglut_core3 PF13471.1 gi|312137303|ref|YP_004004640.1| - 0.049 13.4 4.1 0.3 10.8 0.9 2.4 2 0 0 2 2 2 0 Transglutaminase-like superfamily Radical_SAM PF04055.16 gi|312137304|ref|YP_004004641.1| - 5.1e-16 59.2 0.3 1e-15 58.3 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137304|ref|YP_004004641.1| - 4.3e-11 43.0 1.7 5.7e-10 39.4 0.1 2.7 1 1 2 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137304|ref|YP_004004641.1| - 4.3e-07 29.9 0.1 1.2e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF2112 PF09885.4 gi|312137304|ref|YP_004004641.1| - 0.057 13.0 1.0 0.094 12.3 0.1 1.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2112) Hydrolase_3 PF08282.7 gi|312137304|ref|YP_004004641.1| - 3.4 7.1 7.1 53 3.2 3.6 2.7 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase MFS_1 PF07690.11 gi|312137305|ref|YP_004004642.1| - 9.6e-54 182.4 33.5 9.6e-54 182.4 23.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|312137305|ref|YP_004004642.1| - 2e-10 39.4 5.0 3.2e-06 25.5 0.3 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|312137305|ref|YP_004004642.1| - 2.9e-10 39.3 12.5 2.9e-10 39.3 8.6 3.1 2 2 1 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|312137305|ref|YP_004004642.1| - 0.038 13.7 0.0 0.038 13.7 0.0 3.3 3 0 0 3 3 3 0 MFS_1 like family NOB1_Zn_bind PF08772.6 gi|312137306|ref|YP_004004643.1| - 0.00014 21.6 1.4 0.0004 20.1 0.5 2.0 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.8 gi|312137306|ref|YP_004004643.1| - 0.011 15.5 0.6 0.018 14.8 0.4 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF4206 PF13901.1 gi|312137306|ref|YP_004004643.1| - 0.024 14.1 0.9 0.061 12.8 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4206) YgbB PF02542.11 gi|312137306|ref|YP_004004643.1| - 0.14 11.9 1.2 0.2 11.4 0.9 1.2 1 0 0 1 1 1 0 YgbB family Isochorismatase PF00857.15 gi|312137307|ref|YP_004004644.1| - 6.9e-46 156.3 0.0 7.8e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|312137307|ref|YP_004004644.1| - 0.0045 16.3 0.0 0.0091 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2117 PF09890.4 gi|312137308|ref|YP_004004645.1| - 6.4e-77 257.5 9.4 6.4e-77 257.5 6.5 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) TPP_enzyme_M PF00205.17 gi|312137308|ref|YP_004004645.1| - 0.00024 20.8 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain NAD_kinase PF01513.16 gi|312137308|ref|YP_004004645.1| - 0.0026 16.5 0.7 0.0053 15.5 0.1 1.7 2 0 0 2 2 2 1 ATP-NAD kinase AIRS PF00586.19 gi|312137309|ref|YP_004004646.1| - 2.7e-20 72.4 0.3 5.6e-20 71.3 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|312137309|ref|YP_004004646.1| - 2e-16 60.3 0.0 3.1e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF2846 PF11008.3 gi|312137310|ref|YP_004004647.1| - 0.049 13.4 0.4 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2846) DUF2102 PF09875.4 gi|312137311|ref|YP_004004648.1| - 6.5e-41 138.0 0.1 8.4e-41 137.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2111 PF09884.4 gi|312137312|ref|YP_004004649.1| - 9.8e-39 131.0 0.8 1.2e-38 130.7 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) H_kinase_N PF12282.3 gi|312137312|ref|YP_004004649.1| - 0.0094 15.5 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Signal transduction histidine kinase GAF_3 PF13492.1 gi|312137312|ref|YP_004004649.1| - 0.01 15.8 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 0 GAF domain GAF_2 PF13185.1 gi|312137312|ref|YP_004004649.1| - 0.081 13.4 0.1 0.093 13.2 0.0 1.3 1 1 0 1 1 1 0 GAF domain DUF2112 PF09885.4 gi|312137313|ref|YP_004004650.1| - 1.4e-68 228.9 0.2 1.6e-68 228.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|312137314|ref|YP_004004651.1| - 7.3e-62 209.1 6.2 1.1e-61 208.5 4.3 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|312137314|ref|YP_004004651.1| - 0.00098 17.5 2.2 0.052 11.8 0.3 2.3 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.8 gi|312137314|ref|YP_004004651.1| - 0.0045 16.5 1.8 0.0045 16.5 1.3 2.3 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|312137314|ref|YP_004004651.1| - 0.0099 15.7 7.3 0.1 12.4 3.3 3.3 2 1 0 2 2 2 1 Cell division protein FtsA FGGY_N PF00370.16 gi|312137314|ref|YP_004004651.1| - 0.022 14.0 0.1 1.9 7.7 0.1 2.5 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DNA_pol3_beta_3 PF02768.10 gi|312137314|ref|YP_004004651.1| - 0.029 13.9 0.1 0.073 12.6 0.1 1.6 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain UPF0004 PF00919.15 gi|312137314|ref|YP_004004651.1| - 0.039 13.7 0.4 0.41 10.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 Peptidase_M22 PF00814.20 gi|312137314|ref|YP_004004651.1| - 0.047 13.1 0.0 6.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Glycoprotease family DUF955 PF06114.8 gi|312137314|ref|YP_004004651.1| - 0.057 13.1 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF955) FTR_C PF02741.10 gi|312137315|ref|YP_004004652.1| - 3.3e-59 198.9 0.0 9.2e-59 197.5 0.0 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|312137315|ref|YP_004004652.1| - 1e-47 161.5 0.0 1.4e-47 161.0 0.0 1.2 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase HAD PF12710.2 gi|312137316|ref|YP_004004653.1| - 1.1e-06 28.9 0.0 1.8e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|312137316|ref|YP_004004653.1| - 0.00011 22.4 0.0 0.068 13.3 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|312137316|ref|YP_004004653.1| - 0.0015 18.1 3.0 0.0024 17.4 2.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|312137316|ref|YP_004004653.1| - 0.0029 16.5 0.3 0.0082 15.0 0.0 1.8 2 0 0 2 2 2 1 Trehalose-phosphatase Hydrolase_like PF13242.1 gi|312137316|ref|YP_004004653.1| - 0.0036 16.9 0.0 0.0071 16.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|312137316|ref|YP_004004653.1| - 0.027 14.8 0.0 0.085 13.2 0.0 1.7 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|312137316|ref|YP_004004653.1| - 0.031 13.9 0.1 0.086 12.4 0.0 1.9 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase PfkB PF00294.19 gi|312137317|ref|YP_004004654.1| - 9.8e-58 195.6 0.0 1.1e-57 195.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TrwB_AAD_bind PF10412.4 gi|312137318|ref|YP_004004655.1| - 0.035 12.7 0.0 0.039 12.5 0.0 1.0 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|312137319|ref|YP_004004656.1| - 1.6e-41 141.8 0.1 1.9e-41 141.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|312137319|ref|YP_004004656.1| - 8.4e-15 55.0 0.0 1.9e-14 53.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|312137319|ref|YP_004004656.1| - 1.8e-12 46.8 0.2 3.9e-11 42.5 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|312137319|ref|YP_004004656.1| - 1.7e-10 40.5 0.4 3.1e-09 36.4 0.3 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|312137319|ref|YP_004004656.1| - 1e-08 34.8 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|312137319|ref|YP_004004656.1| - 2.3e-07 30.1 1.2 3.8e-06 26.1 0.8 2.1 1 1 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.6 gi|312137319|ref|YP_004004656.1| - 0.0008 18.5 0.4 0.0058 15.7 0.1 2.0 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.17 gi|312137319|ref|YP_004004656.1| - 0.0031 16.9 0.1 0.15 11.4 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FTHFS PF01268.14 gi|312137319|ref|YP_004004656.1| - 0.021 12.8 0.2 0.043 11.8 0.1 1.4 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_18 PF13238.1 gi|312137319|ref|YP_004004656.1| - 0.053 13.8 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|312137319|ref|YP_004004656.1| - 0.057 13.1 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|312137319|ref|YP_004004656.1| - 0.11 12.0 0.1 0.5 9.8 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Radical_SAM PF04055.16 gi|312137320|ref|YP_004004657.1| - 4.3e-14 53.0 0.0 1.3e-13 51.4 0.0 1.8 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.14 gi|312137320|ref|YP_004004657.1| - 0.027 14.3 0.0 0.057 13.2 0.0 1.6 1 1 0 1 1 1 0 B12 binding domain USP8_interact PF08941.5 gi|312137320|ref|YP_004004657.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 USP8 interacting AAA PF00004.24 gi|312137320|ref|YP_004004657.1| - 0.14 12.3 0.1 0.85 9.8 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Silic_transp PF03842.8 gi|312137320|ref|YP_004004657.1| - 0.18 9.8 0.0 0.24 9.4 0.0 1.2 1 0 0 1 1 1 0 Silicon transporter DUF2142 PF09913.4 gi|312137321|ref|YP_004004658.1| - 4.3e-81 272.5 25.9 4.3e-81 272.5 17.9 1.6 1 1 1 2 2 2 1 Predicted membrane protein (DUF2142) Ribosomal_L50 PF10501.4 gi|312137321|ref|YP_004004658.1| - 0.041 13.8 0.3 0.071 13.0 0.2 1.3 1 0 0 1 1 1 0 Ribosomal subunit 39S DUF4064 PF13273.1 gi|312137321|ref|YP_004004658.1| - 0.38 10.8 0.0 0.38 10.8 0.0 4.8 2 1 2 4 4 4 0 Protein of unknown function (DUF4064) GATase_2 PF00310.16 gi|312137322|ref|YP_004004659.1| - 2.4e-23 82.4 0.1 8.4e-15 54.3 0.0 3.0 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|312137322|ref|YP_004004659.1| - 1.3e-19 70.1 0.0 2e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|312137322|ref|YP_004004659.1| - 2.1e-18 66.5 0.0 2.9e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|312137322|ref|YP_004004659.1| - 3e-05 22.8 0.0 4.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GXGXG PF01493.14 gi|312137323|ref|YP_004004660.1| - 5.8e-47 159.3 14.7 6.9e-47 159.0 10.2 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|312137324|ref|YP_004004661.1| - 1.5e-44 151.2 0.1 1.5e-44 151.2 0.1 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|312137324|ref|YP_004004661.1| - 4.6e-22 77.6 0.0 8.2e-22 76.8 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|312137324|ref|YP_004004661.1| - 0.00029 20.3 4.4 0.00029 20.3 3.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312137324|ref|YP_004004661.1| - 0.00048 20.3 19.6 0.0039 17.4 7.7 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|312137324|ref|YP_004004661.1| - 0.00064 19.4 3.4 0.00064 19.4 2.3 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|312137324|ref|YP_004004661.1| - 0.0013 19.1 7.6 0.0083 16.5 0.1 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312137324|ref|YP_004004661.1| - 0.0019 18.0 12.0 0.0019 18.0 8.3 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137324|ref|YP_004004661.1| - 0.0056 16.4 11.7 0.0056 16.4 8.1 2.3 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312137324|ref|YP_004004661.1| - 0.014 15.2 2.7 0.014 15.2 1.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312137324|ref|YP_004004661.1| - 0.032 14.5 8.7 0.048 14.0 0.0 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312137324|ref|YP_004004661.1| - 0.11 12.9 17.8 0.075 13.4 8.6 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137324|ref|YP_004004661.1| - 0.18 12.5 14.0 0.17 12.6 1.6 3.5 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|312137324|ref|YP_004004661.1| - 0.8 9.7 15.5 0.059 13.4 0.8 3.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137324|ref|YP_004004661.1| - 6.7 7.5 19.0 1.5 9.5 1.9 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Glu_synthase PF01645.12 gi|312137325|ref|YP_004004662.1| - 6.4e-132 439.9 7.8 1.7e-131 438.5 5.4 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|312137325|ref|YP_004004662.1| - 7.5e-17 61.2 16.5 1.1e-14 54.0 4.5 3.1 2 1 1 3 3 3 3 FMN-dependent dehydrogenase NMO PF03060.10 gi|312137325|ref|YP_004004662.1| - 1.8e-14 53.6 2.1 3.2e-14 52.8 1.4 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|312137325|ref|YP_004004662.1| - 6e-10 38.5 10.1 1.3e-07 30.8 4.4 3.3 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Fer4_21 PF14697.1 gi|312137325|ref|YP_004004662.1| - 3.9e-08 33.0 8.5 3.9e-08 33.0 5.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|312137325|ref|YP_004004662.1| - 1.9e-07 30.4 2.9 1.9e-07 30.4 2.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|312137325|ref|YP_004004662.1| - 3.3e-07 30.4 25.6 1.9e-06 28.0 8.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|312137325|ref|YP_004004662.1| - 1.8e-06 28.2 24.0 0.00018 21.7 8.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137325|ref|YP_004004662.1| - 3.2e-06 26.8 23.9 1.4e-05 24.8 8.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137325|ref|YP_004004662.1| - 8.4e-06 26.4 12.7 0.00061 20.4 1.0 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain His_biosynth PF00977.16 gi|312137325|ref|YP_004004662.1| - 0.00082 18.6 0.7 0.0018 17.5 0.2 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|312137325|ref|YP_004004662.1| - 0.0019 17.2 1.1 0.0019 17.2 0.7 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_6 PF12837.2 gi|312137325|ref|YP_004004662.1| - 0.0021 17.8 3.2 0.0021 17.8 2.2 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|312137325|ref|YP_004004662.1| - 0.0026 17.6 2.2 0.0026 17.6 1.5 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312137325|ref|YP_004004662.1| - 0.0054 16.7 19.2 0.0096 15.9 0.6 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain QRPTase_C PF01729.14 gi|312137325|ref|YP_004004662.1| - 0.012 15.1 0.2 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glu_syn_central PF04898.9 gi|312137325|ref|YP_004004662.1| - 0.012 14.8 0.8 0.6 9.3 0.1 2.2 2 0 0 2 2 2 0 Glutamate synthase central domain Fer4_17 PF13534.1 gi|312137325|ref|YP_004004662.1| - 0.015 15.6 20.9 0.021 15.1 0.8 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain ThiG PF05690.9 gi|312137325|ref|YP_004004662.1| - 0.026 13.6 4.3 0.053 12.5 0.8 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|312137325|ref|YP_004004662.1| - 0.047 12.7 0.1 0.1 11.6 0.1 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PRAI PF00697.17 gi|312137325|ref|YP_004004662.1| - 0.081 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PcrB PF01884.12 gi|312137325|ref|YP_004004662.1| - 0.43 9.7 7.6 0.12 11.5 0.9 2.6 1 1 1 2 2 2 0 PcrB family Fer4_4 PF12800.2 gi|312137325|ref|YP_004004662.1| - 0.54 10.7 24.5 0.055 13.8 1.7 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain DeoC PF01791.4 gi|312137325|ref|YP_004004662.1| - 1.9 7.7 9.0 0.26 10.5 3.2 1.8 2 0 0 2 2 2 0 DeoC/LacD family aldolase PEP-utilizers_C PF02896.13 gi|312137326|ref|YP_004004663.1| - 7.7e-52 175.9 0.0 9.9e-52 175.6 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|312137326|ref|YP_004004663.1| - 7.5e-25 86.3 0.8 1.3e-24 85.5 0.6 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Peptidase_M48 PF01435.13 gi|312137327|ref|YP_004004664.1| - 1.3e-46 158.9 0.0 1.1e-45 156.0 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M48 EF-hand_5 PF13202.1 gi|312137327|ref|YP_004004664.1| - 5.1e-07 28.7 1.1 1.1e-05 24.5 0.1 2.6 2 0 0 2 2 2 1 EF hand Peptidase_M56 PF05569.6 gi|312137327|ref|YP_004004664.1| - 5.5e-07 28.8 0.4 5.5e-07 28.8 0.3 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 EF-hand_1 PF00036.27 gi|312137327|ref|YP_004004664.1| - 0.0096 15.1 0.0 0.11 11.8 0.0 2.4 2 0 0 2 2 2 1 EF hand DUF204 PF02659.10 gi|312137327|ref|YP_004004664.1| - 0.087 12.9 7.3 0.91 9.6 1.8 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF EF-hand_6 PF13405.1 gi|312137327|ref|YP_004004664.1| - 0.096 12.6 0.0 5.9 7.0 0.0 2.6 2 0 0 2 2 2 0 EF-hand domain HTH_IclR PF09339.5 gi|312137327|ref|YP_004004664.1| - 0.1 12.2 0.0 12 5.5 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain ABC2_membrane_4 PF12730.2 gi|312137327|ref|YP_004004664.1| - 0.16 11.1 14.5 0.28 10.3 1.8 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Caveolin PF01146.12 gi|312137327|ref|YP_004004664.1| - 0.32 10.5 2.3 0.69 9.4 1.6 1.6 1 0 0 1 1 1 0 Caveolin DUF2207 PF09972.4 gi|312137327|ref|YP_004004664.1| - 0.68 8.4 10.3 0.2 10.1 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Peptidase_S24 PF00717.18 gi|312137328|ref|YP_004004665.1| - 4.6e-14 51.8 1.5 8e-14 51.0 1.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like DHquinase_I PF01487.10 gi|312137329|ref|YP_004004666.1| - 5.3e-59 199.5 0.3 6e-59 199.4 0.2 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Glyco_tranf_2_2 PF10111.4 gi|312137329|ref|YP_004004666.1| - 0.00081 18.5 0.1 0.0011 18.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DHQS PF01959.11 gi|312137329|ref|YP_004004666.1| - 0.0069 15.1 0.4 0.0088 14.7 0.3 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) P-II PF00543.17 gi|312137330|ref|YP_004004667.1| - 8.2e-42 141.8 4.0 9.2e-42 141.6 2.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|312137330|ref|YP_004004667.1| - 0.0035 17.2 0.9 2.1 8.3 0.2 2.3 2 1 0 2 2 2 2 Protein of unknown function (DUF970) CaM-KIIN PF15170.1 gi|312137330|ref|YP_004004667.1| - 0.079 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Calcium/calmodulin-dependent protein kinase II inhibitor Gln-synt_C PF00120.19 gi|312137331|ref|YP_004004668.1| - 3.1e-100 334.5 0.0 3.9e-100 334.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|312137331|ref|YP_004004668.1| - 2.9e-30 103.6 0.1 5.7e-30 102.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AA_permease_2 PF13520.1 gi|312137332|ref|YP_004004669.1| - 1e-58 198.9 60.5 1.6e-58 198.2 41.9 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|312137332|ref|YP_004004669.1| - 9.1e-40 136.3 54.0 1.2e-39 135.9 37.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|312137332|ref|YP_004004669.1| - 1.8e-17 62.8 5.7 1.8e-17 62.8 4.0 5.5 6 1 1 7 7 7 1 C-terminus of AA_permease FIST PF08495.5 gi|312137333|ref|YP_004004670.1| - 7e-46 155.8 0.1 4.4e-45 153.2 0.0 1.9 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.4 gi|312137333|ref|YP_004004670.1| - 2e-25 89.3 0.0 4e-23 81.8 0.0 2.2 2 0 0 2 2 2 2 FIST C domain AdoMet_Synthase PF01941.14 gi|312137334|ref|YP_004004671.1| - 1.8e-183 609.5 7.0 2e-183 609.3 4.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) tRNA-synt_1 PF00133.17 gi|312137335|ref|YP_004004672.1| - 3.9e-217 722.0 10.1 5.5e-217 721.5 7.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|312137335|ref|YP_004004672.1| - 1.2e-32 112.7 2.5 1.2e-32 112.7 1.7 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|312137335|ref|YP_004004672.1| - 1.4e-25 89.7 11.0 9.5e-12 44.2 0.0 4.6 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|312137335|ref|YP_004004672.1| - 2.9e-08 33.2 1.6 1.3e-07 31.0 0.1 2.3 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|312137335|ref|YP_004004672.1| - 2e-06 27.1 0.0 1.5e-05 24.3 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain IBR PF01485.16 gi|312137335|ref|YP_004004672.1| - 0.55 10.1 3.5 11 5.9 0.0 3.0 3 0 0 3 3 3 0 IBR domain AIRS_C PF02769.17 gi|312137336|ref|YP_004004673.1| - 1.3e-59 200.5 0.3 2.9e-30 105.3 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|312137336|ref|YP_004004673.1| - 1.6e-49 166.0 1.0 2.8e-24 85.1 0.0 2.7 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain CobN-Mg_chel PF02514.11 gi|312137337|ref|YP_004004674.1| - 2.2e-271 902.9 0.0 2.9e-204 680.6 0.0 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF1825 PF08855.5 gi|312137337|ref|YP_004004674.1| - 0.046 13.7 0.1 0.15 12.0 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) SAM_1 PF00536.25 gi|312137337|ref|YP_004004674.1| - 0.1 12.8 0.1 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) Sda PF08970.5 gi|312137337|ref|YP_004004674.1| - 0.48 9.9 4.5 6.6 6.3 1.5 2.7 1 1 1 2 2 2 0 Sporulation inhibitor A CobD_Cbib PF03186.8 gi|312137338|ref|YP_004004675.1| - 1.2e-93 313.3 0.0 1.5e-93 313.1 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Reticulon PF02453.12 gi|312137338|ref|YP_004004675.1| - 0.00044 19.9 9.0 0.074 12.6 0.0 2.8 2 1 1 3 3 3 2 Reticulon BAGE PF08180.6 gi|312137338|ref|YP_004004675.1| - 0.095 12.4 0.9 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 B melanoma antigen family CYTH PF01928.16 gi|312137339|ref|YP_004004676.1| - 1.4e-37 129.1 8.1 1.6e-37 128.9 5.6 1.0 1 0 0 1 1 1 1 CYTH domain ATP-synt_C PF00137.16 gi|312137340|ref|YP_004004677.1| - 2.5e-20 72.1 13.5 3.3e-20 71.7 9.3 1.2 1 0 0 1 1 1 1 ATP synthase subunit C FtsX PF02687.16 gi|312137340|ref|YP_004004677.1| - 0.23 11.2 6.7 0.27 11.0 4.6 1.1 1 0 0 1 1 1 0 FtsX-like permease family PC_rep PF01851.17 gi|312137340|ref|YP_004004677.1| - 8.9 6.7 9.9 20 5.6 3.7 2.9 2 1 1 3 3 3 0 Proteasome/cyclosome repeat TauE PF01925.14 gi|312137341|ref|YP_004004678.1| - 9.8e-43 146.3 36.7 1.1e-42 146.1 25.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF865 PF05906.6 gi|312137341|ref|YP_004004678.1| - 0.12 11.9 1.4 0.22 11.1 0.9 1.4 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) DUF2456 PF10445.4 gi|312137341|ref|YP_004004678.1| - 1.1 9.2 7.1 0.39 10.6 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2456) 5TM-5TMR_LYT PF07694.7 gi|312137341|ref|YP_004004678.1| - 7 5.9 35.4 0.13 11.5 8.9 2.8 2 1 0 2 2 2 0 5TMR of 5TMR-LYT KaiC PF06745.8 gi|312137342|ref|YP_004004679.1| - 2.2e-88 295.1 0.2 2.5e-88 295.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|312137342|ref|YP_004004679.1| - 3.5e-08 33.0 0.0 5.1e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|312137342|ref|YP_004004679.1| - 0.00013 20.4 0.2 0.064 11.5 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|312137342|ref|YP_004004679.1| - 0.00035 19.5 0.0 0.00049 19.0 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain NTPase_1 PF03266.10 gi|312137342|ref|YP_004004679.1| - 0.00046 19.9 0.0 0.00072 19.3 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|312137342|ref|YP_004004679.1| - 0.0017 18.4 0.0 0.0028 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|312137342|ref|YP_004004679.1| - 0.0023 17.6 0.0 0.0054 16.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|312137342|ref|YP_004004679.1| - 0.003 16.5 0.0 0.0046 15.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|312137342|ref|YP_004004679.1| - 0.0073 17.1 0.1 0.014 16.1 0.1 1.8 1 1 1 2 2 2 1 AAA domain Rad51 PF08423.6 gi|312137342|ref|YP_004004679.1| - 0.01 14.7 0.1 0.074 11.9 0.0 2.1 2 0 0 2 2 2 0 Rad51 UPF0079 PF02367.12 gi|312137342|ref|YP_004004679.1| - 0.014 15.0 0.0 0.08 12.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|312137342|ref|YP_004004679.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|312137342|ref|YP_004004679.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|312137342|ref|YP_004004679.1| - 0.019 15.1 0.1 0.036 14.2 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|312137342|ref|YP_004004679.1| - 0.019 13.9 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CPT PF07931.7 gi|312137342|ref|YP_004004679.1| - 0.035 13.7 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein HutP PF09021.6 gi|312137342|ref|YP_004004679.1| - 0.04 14.1 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 HutP AAA_18 PF13238.1 gi|312137342|ref|YP_004004679.1| - 0.046 14.0 0.2 0.096 12.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|312137342|ref|YP_004004679.1| - 0.069 11.7 0.0 0.099 11.2 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase AAA_16 PF13191.1 gi|312137342|ref|YP_004004679.1| - 0.17 11.8 0.0 0.24 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain HTH_38 PF13936.1 gi|312137343|ref|YP_004004680.1| - 2.2e-06 27.1 0.4 5.4e-06 25.8 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|312137343|ref|YP_004004680.1| - 1.1e-05 24.8 0.1 2.2e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|312137343|ref|YP_004004680.1| - 0.0003 20.2 0.1 0.0009 18.6 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|312137343|ref|YP_004004680.1| - 0.00068 19.7 1.2 0.017 15.2 0.8 2.3 1 1 0 1 1 1 1 KorB domain HTH_11 PF08279.7 gi|312137343|ref|YP_004004680.1| - 0.00068 19.2 2.4 0.00076 19.0 0.0 2.3 3 0 0 3 3 1 1 HTH domain AAA_23 PF13476.1 gi|312137343|ref|YP_004004680.1| - 0.00076 19.8 11.2 0.00079 19.7 7.8 1.1 1 0 0 1 1 1 1 AAA domain DUF148 PF02520.12 gi|312137343|ref|YP_004004680.1| - 0.00093 18.9 3.7 0.0016 18.1 2.6 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF148 GerE PF00196.14 gi|312137343|ref|YP_004004680.1| - 0.001 18.3 0.0 0.0026 17.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Terminase_5 PF06056.7 gi|312137343|ref|YP_004004680.1| - 0.0011 18.4 0.0 0.0023 17.4 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.1 gi|312137343|ref|YP_004004680.1| - 0.0011 18.2 0.1 0.0044 16.3 0.0 2.1 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding ALIX_LYPXL_bnd PF13949.1 gi|312137343|ref|YP_004004680.1| - 0.0017 17.3 6.8 0.0023 16.9 4.7 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV HTH_17 PF12728.2 gi|312137343|ref|YP_004004680.1| - 0.0019 18.3 0.4 0.016 15.4 0.3 2.6 1 1 0 1 1 1 1 Helix-turn-helix domain Prominin PF05478.6 gi|312137343|ref|YP_004004680.1| - 0.0021 15.6 1.7 0.0024 15.4 1.2 1.1 1 0 0 1 1 1 1 Prominin Cluap1 PF10234.4 gi|312137343|ref|YP_004004680.1| - 0.0024 17.1 7.1 0.0037 16.5 5.0 1.3 1 0 0 1 1 1 1 Clusterin-associated protein-1 NPV_P10 PF05531.7 gi|312137343|ref|YP_004004680.1| - 0.0034 17.6 1.8 0.0072 16.5 1.0 1.8 2 0 0 2 2 1 1 Nucleopolyhedrovirus P10 protein Sigma70_r4 PF04545.11 gi|312137343|ref|YP_004004680.1| - 0.0054 16.0 1.3 0.0095 15.2 0.2 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|312137343|ref|YP_004004680.1| - 0.0069 16.3 0.1 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|312137343|ref|YP_004004680.1| - 0.0077 16.0 0.0 0.025 14.3 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|312137343|ref|YP_004004680.1| - 0.0092 16.1 0.2 0.015 15.4 0.2 1.5 1 1 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.1 gi|312137343|ref|YP_004004680.1| - 0.011 15.8 8.1 0.23 11.6 5.6 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|312137343|ref|YP_004004680.1| - 0.014 15.5 0.1 0.039 14.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|312137343|ref|YP_004004680.1| - 0.018 14.8 0.2 0.018 14.8 0.2 2.6 2 1 0 2 2 1 0 Helix-turn-helix TrmB PF01978.14 gi|312137343|ref|YP_004004680.1| - 0.021 14.4 0.1 0.084 12.5 0.1 2.1 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|312137343|ref|YP_004004680.1| - 0.026 14.0 0.1 0.11 12.0 0.1 2.0 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Spc7 PF08317.6 gi|312137343|ref|YP_004004680.1| - 0.026 13.1 12.5 0.035 12.7 8.7 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein MarR_2 PF12802.2 gi|312137343|ref|YP_004004680.1| - 0.029 14.0 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family APC2 PF08672.6 gi|312137343|ref|YP_004004680.1| - 0.033 14.4 0.5 0.13 12.4 0.3 2.1 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HTH_19 PF12844.2 gi|312137343|ref|YP_004004680.1| - 0.033 14.2 6.9 0.96 9.5 4.8 2.6 1 1 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.11 gi|312137343|ref|YP_004004680.1| - 0.042 12.9 5.6 2.1 7.4 2.1 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_Tnp_1 PF01527.15 gi|312137343|ref|YP_004004680.1| - 0.048 13.6 3.3 0.34 10.8 2.3 2.2 1 1 0 1 1 1 0 Transposase Sigma70_ner PF04546.8 gi|312137343|ref|YP_004004680.1| - 0.053 13.1 10.0 1.1 8.7 4.7 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region eIF-5_eIF-2B PF01873.12 gi|312137343|ref|YP_004004680.1| - 0.062 12.9 0.2 0.11 12.1 0.1 1.4 1 1 0 1 1 1 0 Domain found in IF2B/IF5 Myb_DNA-bind_6 PF13921.1 gi|312137343|ref|YP_004004680.1| - 0.074 13.1 0.5 0.26 11.4 0.0 2.1 2 0 0 2 2 1 0 Myb-like DNA-binding domain DUF2443 PF10398.4 gi|312137343|ref|YP_004004680.1| - 0.083 12.6 6.8 0.069 12.9 1.6 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2443) Phage_terminase PF10668.4 gi|312137343|ref|YP_004004680.1| - 0.084 12.6 0.4 0.48 10.2 0.0 2.3 2 0 0 2 2 2 0 Phage terminase small subunit Mod_r PF07200.8 gi|312137343|ref|YP_004004680.1| - 0.084 12.7 10.8 0.26 11.2 6.8 1.9 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.6 gi|312137343|ref|YP_004004680.1| - 0.095 12.6 12.4 0.33 10.8 6.7 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) TetR_N PF00440.18 gi|312137343|ref|YP_004004680.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Laminin_II PF06009.7 gi|312137343|ref|YP_004004680.1| - 0.16 11.7 7.4 0.31 10.8 1.7 2.1 1 1 1 2 2 2 0 Laminin Domain II Hrs_helical PF12210.3 gi|312137343|ref|YP_004004680.1| - 0.19 12.0 3.4 1.1 9.4 2.1 2.2 1 1 1 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF883 PF05957.8 gi|312137343|ref|YP_004004680.1| - 0.19 12.1 7.8 6.4 7.2 2.1 2.5 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Lipoprotein_20 PF13942.1 gi|312137343|ref|YP_004004680.1| - 0.21 11.1 10.9 0.22 11.0 5.7 1.9 1 1 1 2 2 2 0 YfhG lipoprotein DUF489 PF04356.7 gi|312137343|ref|YP_004004680.1| - 0.23 11.0 1.5 0.29 10.6 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) DUF2316 PF10078.4 gi|312137343|ref|YP_004004680.1| - 0.24 11.4 4.3 1.6 8.7 0.1 2.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) V_ATPase_I PF01496.14 gi|312137343|ref|YP_004004680.1| - 0.28 9.0 10.1 0.33 8.7 7.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Syntaxin-6_N PF09177.6 gi|312137343|ref|YP_004004680.1| - 0.37 11.2 7.0 2.7 8.4 2.7 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Hemerythrin PF01814.18 gi|312137343|ref|YP_004004680.1| - 0.38 10.9 3.9 6.4 6.9 1.1 2.3 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain Mto2_bdg PF12808.2 gi|312137343|ref|YP_004004680.1| - 0.42 10.7 7.9 1.4 9.1 5.5 1.9 1 1 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DivIC PF04977.10 gi|312137343|ref|YP_004004680.1| - 0.44 10.0 13.0 0.47 9.9 5.9 2.6 2 1 0 2 2 2 0 Septum formation initiator FliD_N PF02465.13 gi|312137343|ref|YP_004004680.1| - 0.49 10.7 2.6 0.74 10.2 1.3 1.6 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Nup54 PF13874.1 gi|312137343|ref|YP_004004680.1| - 0.5 10.0 6.8 0.81 9.3 3.0 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 COG2 PF06148.6 gi|312137343|ref|YP_004004680.1| - 0.5 10.2 7.0 1.7 8.5 2.0 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 P4Ha_N PF08336.6 gi|312137343|ref|YP_004004680.1| - 0.56 10.0 7.0 5.2 6.8 2.6 2.2 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region ISG65-75 PF11727.3 gi|312137343|ref|YP_004004680.1| - 0.62 9.0 11.6 0.54 9.2 0.1 1.8 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF1664 PF07889.7 gi|312137343|ref|YP_004004680.1| - 0.74 9.6 8.2 0.73 9.6 4.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) LLC1 PF14945.1 gi|312137343|ref|YP_004004680.1| - 0.8 10.0 7.0 4.7 7.5 0.2 2.2 1 1 1 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein DUF948 PF06103.6 gi|312137343|ref|YP_004004680.1| - 0.84 9.5 5.7 0.97 9.3 2.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|312137343|ref|YP_004004680.1| - 0.95 9.0 12.5 1.2 8.6 8.3 1.4 1 1 0 1 1 1 0 IncA protein Atg14 PF10186.4 gi|312137343|ref|YP_004004680.1| - 0.95 8.3 6.8 1.1 8.0 4.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_1 PF00170.16 gi|312137343|ref|YP_004004680.1| - 1 9.3 13.3 2.8 7.9 9.2 1.8 1 0 0 1 1 1 0 bZIP transcription factor DUF972 PF06156.8 gi|312137343|ref|YP_004004680.1| - 1.1 9.6 12.3 0.53 10.6 6.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Tho2 PF11262.3 gi|312137343|ref|YP_004004680.1| - 1.1 8.2 6.0 1.3 8.0 4.2 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Occludin_ELL PF07303.8 gi|312137343|ref|YP_004004680.1| - 1.3 9.7 9.6 0.73 10.5 2.0 2.2 1 1 1 2 2 2 0 Occludin homology domain DUF3373 PF11853.3 gi|312137343|ref|YP_004004680.1| - 1.5 7.2 4.9 2 6.8 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) Matrilin_ccoil PF10393.4 gi|312137343|ref|YP_004004680.1| - 2.3 7.6 7.9 57 3.1 5.5 2.5 1 1 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF607 PF04678.8 gi|312137343|ref|YP_004004680.1| - 3.5 7.4 5.7 4.3 7.2 3.8 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF607 DUF4145 PF13643.1 gi|312137343|ref|YP_004004680.1| - 4.1 7.3 5.9 22 4.9 4.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) Viral_P18 PF04521.8 gi|312137343|ref|YP_004004680.1| - 4.1 6.8 7.7 1.6 8.1 3.3 1.8 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF1640 PF07798.6 gi|312137343|ref|YP_004004680.1| - 4.1 7.3 13.3 2.9 7.8 3.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Rabaptin PF03528.10 gi|312137343|ref|YP_004004680.1| - 4.3 7.3 11.5 13 5.7 8.0 1.9 1 1 0 1 1 1 0 Rabaptin DUF4446 PF14584.1 gi|312137343|ref|YP_004004680.1| - 5.3 6.8 7.4 3.5 7.4 3.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Seryl_tRNA_N PF02403.17 gi|312137343|ref|YP_004004680.1| - 6.1 6.9 16.2 3.4 7.7 6.9 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med21 PF11221.3 gi|312137343|ref|YP_004004680.1| - 7.6 6.5 15.8 1.1 9.2 6.9 2.1 1 1 0 2 2 2 0 Subunit 21 of Mediator complex DUF730 PF05325.6 gi|312137343|ref|YP_004004680.1| - 7.8 6.3 8.0 10 5.9 5.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF730) YtxH PF12732.2 gi|312137343|ref|YP_004004680.1| - 9.3 6.6 13.1 1.9e+03 -0.8 9.1 2.5 1 1 0 1 1 1 0 YtxH-like protein DUF2299 PF10061.4 gi|312137344|ref|YP_004004681.1| - 6.4e-42 142.2 0.1 7.4e-42 142.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) CbiA PF01656.18 gi|312137344|ref|YP_004004681.1| - 0.034 13.5 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.12 gi|312137345|ref|YP_004004682.1| - 0.036 13.8 2.3 0.55 10.0 0.4 2.2 1 1 0 2 2 2 0 Domain of unknown function DUF87 DUF4304 PF14137.1 gi|312137345|ref|YP_004004682.1| - 0.037 14.1 0.1 0.081 13.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4304) DUF3149 PF11346.3 gi|312137345|ref|YP_004004682.1| - 0.69 9.5 4.7 1.4 8.5 3.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) SNARE_assoc PF09335.6 gi|312137346|ref|YP_004004683.1| - 4e-26 91.6 3.9 9.3e-26 90.4 2.7 1.6 1 0 0 1 1 1 1 SNARE associated Golgi protein Sua5_yciO_yrdC PF01300.13 gi|312137347|ref|YP_004004684.1| - 1.6e-49 167.5 0.1 1.9e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination CRISPR_Cas2 PF09827.4 gi|312137348|ref|YP_004004685.1| - 6.6e-24 83.8 1.4 7.5e-24 83.6 1.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Ku_PK_bind PF08785.6 gi|312137348|ref|YP_004004685.1| - 0.061 13.2 0.1 0.064 13.1 0.1 1.1 1 0 0 1 1 1 0 Ku C terminal domain like Latrotoxin_C PF15658.1 gi|312137348|ref|YP_004004685.1| - 0.069 12.9 0.3 0.14 11.9 0.1 1.6 1 1 1 2 2 2 0 Latrotoxin C-terminal domain Cas_Cas6 PF01881.11 gi|312137351|ref|YP_004004688.1| - 1.5e-20 73.9 5.6 1.5e-20 73.9 3.9 1.5 2 0 0 2 2 2 1 CRISPR associated protein Cas6 Zn_dep_PLPC PF00882.13 gi|312137352|ref|YP_004004689.1| - 7.4e-18 64.7 1.0 9.6e-18 64.3 0.7 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|312137352|ref|YP_004004689.1| - 0.017 14.4 0.1 1.8 7.8 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) DUF1689 PF07954.6 gi|312137352|ref|YP_004004689.1| - 0.069 13.0 0.9 0.17 11.7 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1689) THAP PF05485.7 gi|312137352|ref|YP_004004689.1| - 0.18 11.9 0.9 8.4 6.6 0.3 2.2 2 0 0 2 2 2 0 THAP domain DBI_PRT PF02277.12 gi|312137353|ref|YP_004004690.1| - 7.5e-28 97.5 0.0 1.2e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase OrfB_IS605 PF01385.14 gi|312137356|ref|YP_004004693.1| - 4.5e-35 121.0 12.3 7.1e-35 120.4 8.5 1.2 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|312137356|ref|YP_004004693.1| - 1.2e-14 53.3 0.1 4.2e-14 51.5 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|312137356|ref|YP_004004693.1| - 7.1e-06 25.5 0.0 2.5e-05 23.8 0.0 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Methyltransf_20 PF12147.3 gi|312137356|ref|YP_004004693.1| - 0.033 13.0 0.5 0.047 12.5 0.4 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF904 PF06005.7 gi|312137356|ref|YP_004004693.1| - 2.8 8.3 8.6 0.28 11.4 0.5 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF904) DUF2207 PF09972.4 gi|312137357|ref|YP_004004694.1| - 0.048 12.2 0.0 0.048 12.2 0.0 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Tetraspannin PF00335.15 gi|312137357|ref|YP_004004694.1| - 0.17 11.1 11.6 0.29 10.3 4.5 2.3 2 0 0 2 2 2 0 Tetraspanin family FA_desaturase PF00487.19 gi|312137357|ref|YP_004004694.1| - 4.6 6.5 6.6 1.5e+02 1.6 5.8 2.3 2 1 0 2 2 2 0 Fatty acid desaturase Radical_SAM PF04055.16 gi|312137358|ref|YP_004004695.1| - 3.3e-18 66.3 0.6 6.5e-18 65.4 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137358|ref|YP_004004695.1| - 1.8e-12 47.5 0.1 4.2e-12 46.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137358|ref|YP_004004695.1| - 3.1e-10 40.1 0.0 3.1e-10 40.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain PDZ_1 PF12812.2 gi|312137358|ref|YP_004004695.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain CitX PF03802.9 gi|312137358|ref|YP_004004695.1| - 6.5 6.1 6.9 5.5 6.3 0.0 2.5 3 0 0 3 3 3 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DUF372 PF04036.7 gi|312137359|ref|YP_004004696.1| - 8.5e-16 57.1 0.1 1.5e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|312137359|ref|YP_004004696.1| - 2.4e-14 53.1 4.6 3.3e-14 52.6 3.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|312137359|ref|YP_004004696.1| - 0.018 14.5 0.1 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Gene 25-like lysozyme DUF4013 PF13197.1 gi|312137360|ref|YP_004004697.1| - 2.3e-34 118.1 23.6 2.3e-34 118.1 16.3 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) DUF2838 PF10998.3 gi|312137360|ref|YP_004004697.1| - 0.025 14.4 0.1 0.025 14.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2838) CARDB PF07705.6 gi|312137361|ref|YP_004004698.1| - 2.5e-08 33.8 6.0 0.00026 20.9 3.0 3.0 2 2 0 2 2 2 2 CARDB DUF11 PF01345.13 gi|312137361|ref|YP_004004698.1| - 5.2e-08 32.8 1.1 0.0067 16.4 0.0 2.9 2 1 0 2 2 2 2 Domain of unknown function DUF11 Arrestin_C PF02752.17 gi|312137361|ref|YP_004004698.1| - 0.016 15.2 0.4 3.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain PKD PF00801.15 gi|312137361|ref|YP_004004698.1| - 0.048 13.4 1.8 1.5 8.6 0.2 3.0 2 1 0 2 2 2 0 PKD domain CBM49 PF09478.5 gi|312137361|ref|YP_004004698.1| - 0.37 10.9 6.2 0.1 12.6 0.3 2.8 4 0 0 4 4 4 0 Carbohydrate binding domain CBM49 UPF0223 PF05256.7 gi|312137362|ref|YP_004004699.1| - 0.017 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0223) CARDB PF07705.6 gi|312137363|ref|YP_004004700.1| - 2.1e-09 37.3 22.0 4.1e-07 29.9 3.2 5.0 4 0 0 4 4 4 2 CARDB Skp1_POZ PF03931.10 gi|312137363|ref|YP_004004700.1| - 0.0071 16.4 0.2 0.45 10.6 0.1 2.9 2 0 0 2 2 2 1 Skp1 family, tetramerisation domain Receptor_IA-2 PF11548.3 gi|312137363|ref|YP_004004700.1| - 0.061 13.2 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 Protein-tyrosine phosphatase receptor IA-2 DUF2500 PF10694.4 gi|312137364|ref|YP_004004701.1| - 0.097 12.6 0.1 0.097 12.6 0.0 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF2500) DUF1312 PF07009.6 gi|312137364|ref|YP_004004701.1| - 3.7 7.3 10.4 4.4 7.1 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1312) DUF2142 PF09913.4 gi|312137364|ref|YP_004004701.1| - 7 5.1 22.1 1.7e+02 0.6 15.3 2.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DHO_dh PF01180.16 gi|312137365|ref|YP_004004702.1| - 5.3e-75 252.1 6.7 6e-75 251.9 4.7 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|312137365|ref|YP_004004702.1| - 1.3e-18 66.8 0.4 8.5e-14 51.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|312137365|ref|YP_004004702.1| - 5.1e-07 29.1 1.1 1.6e-06 27.5 0.7 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|312137365|ref|YP_004004702.1| - 4.5e-05 22.4 0.2 0.00024 20.0 0.0 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|312137365|ref|YP_004004702.1| - 0.00013 21.3 0.4 0.00076 18.8 0.0 2.3 2 1 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|312137365|ref|YP_004004702.1| - 0.0016 17.4 0.8 0.0027 16.6 0.2 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|312137365|ref|YP_004004702.1| - 0.0048 15.8 3.1 0.051 12.5 0.0 2.6 2 1 0 3 3 3 1 Protein of unknown function (DUF561) TMP-TENI PF02581.12 gi|312137365|ref|YP_004004702.1| - 0.73 8.9 3.0 1.3 8.0 0.1 2.6 4 0 0 4 4 4 0 Thiamine monophosphate synthase/TENI Glu_synthase PF01645.12 gi|312137365|ref|YP_004004702.1| - 2.9 6.7 7.5 0.41 9.5 1.8 1.9 2 1 0 2 2 2 0 Conserved region in glutamate synthase Nop PF01798.13 gi|312137366|ref|YP_004004703.1| - 1.6e-49 167.0 0.5 4e-49 165.7 0.3 1.7 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|312137366|ref|YP_004004703.1| - 2.5e-18 65.6 0.4 6.3e-18 64.3 0.3 1.8 1 0 0 1 1 1 1 NOSIC (NUC001) domain SLAM PF06214.6 gi|312137366|ref|YP_004004703.1| - 0.03 14.2 0.3 0.086 12.7 0.0 1.9 2 0 0 2 2 2 0 Signaling lymphocytic activation molecule (SLAM) protein Endotoxin_N PF03945.9 gi|312137366|ref|YP_004004703.1| - 0.17 11.2 1.7 0.26 10.6 0.4 1.7 1 1 1 2 2 2 0 delta endotoxin, N-terminal domain ArdA PF07275.6 gi|312137366|ref|YP_004004703.1| - 0.22 11.7 3.1 2.8 8.1 0.2 2.5 1 1 0 2 2 2 0 Antirestriction protein (ArdA) ABC1 PF03109.11 gi|312137366|ref|YP_004004703.1| - 0.31 11.0 3.5 0.5 10.3 1.3 2.1 1 1 1 2 2 2 0 ABC1 family Fibrillarin PF01269.12 gi|312137367|ref|YP_004004704.1| - 1e-88 296.1 0.0 1.2e-88 295.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_31 PF13847.1 gi|312137367|ref|YP_004004704.1| - 0.00015 21.3 0.0 0.00043 19.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|312137367|ref|YP_004004704.1| - 0.032 14.7 0.0 0.62 10.5 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|312137367|ref|YP_004004704.1| - 0.095 13.1 0.0 0.26 11.7 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.7 gi|312137367|ref|YP_004004704.1| - 0.13 11.1 0.0 0.35 9.7 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_24 PF13578.1 gi|312137367|ref|YP_004004704.1| - 0.14 12.9 0.0 0.24 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312137367|ref|YP_004004704.1| - 0.15 12.6 0.0 0.35 11.4 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain HTH_3 PF01381.17 gi|312137368|ref|YP_004004705.1| - 3.7e-06 26.6 0.0 1.8e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|312137368|ref|YP_004004705.1| - 5e-06 26.4 0.0 1.9e-05 24.6 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|312137368|ref|YP_004004705.1| - 7.2e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|312137368|ref|YP_004004705.1| - 0.00017 20.8 0.0 0.00029 20.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|312137368|ref|YP_004004705.1| - 0.00045 20.3 0.0 0.00071 19.7 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|312137368|ref|YP_004004705.1| - 0.017 14.6 0.0 0.23 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|312137368|ref|YP_004004705.1| - 0.018 14.6 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Death PF00531.17 gi|312137368|ref|YP_004004705.1| - 0.036 13.8 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Death domain Sigma70_r4_2 PF08281.7 gi|312137368|ref|YP_004004705.1| - 0.15 11.5 0.2 0.6 9.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 SIS PF01380.17 gi|312137369|ref|YP_004004706.1| - 8.4e-19 67.4 0.3 1.2e-18 67.0 0.2 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|312137369|ref|YP_004004706.1| - 1.3e-16 60.5 5.0 1.8e-09 37.3 0.4 2.3 1 1 1 2 2 2 2 SIS domain SMN PF06003.7 gi|312137369|ref|YP_004004706.1| - 0.031 13.3 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) DUF531 PF04407.7 gi|312137369|ref|YP_004004706.1| - 0.056 13.3 0.1 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF531) FdhD-NarQ PF02634.10 gi|312137370|ref|YP_004004707.1| - 3.7e-50 170.5 0.0 2.4e-42 144.9 0.0 2.0 1 1 1 2 2 2 2 FdhD/NarQ family DUF1667 PF07892.6 gi|312137370|ref|YP_004004707.1| - 0.054 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) Radical_SAM PF04055.16 gi|312137371|ref|YP_004004708.1| - 6.3e-33 114.3 2.5 1.2e-32 113.3 0.2 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|312137371|ref|YP_004004708.1| - 1.9e-27 95.4 0.2 3.5e-27 94.6 0.1 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|312137371|ref|YP_004004708.1| - 1.2e-10 41.7 0.3 2.6e-10 40.5 0.2 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137371|ref|YP_004004708.1| - 2.9e-10 40.2 0.1 6.5e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Chlam_PMP PF02415.12 gi|312137372|ref|YP_004004709.1| - 6.6e-13 48.0 41.9 0.087 13.1 0.4 8.8 8 0 0 8 8 8 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Alpha_adaptinC2 PF02883.15 gi|312137372|ref|YP_004004709.1| - 0.015 15.6 0.1 0.034 14.4 0.1 1.6 1 0 0 1 1 1 0 Adaptin C-terminal domain TOBE PF03459.12 gi|312137373|ref|YP_004004710.1| - 1.8e-12 47.1 0.6 2e-12 47.0 0.4 1.0 1 0 0 1 1 1 1 TOBE domain NMT1_2 PF13379.1 gi|312137373|ref|YP_004004710.1| - 0.015 14.7 0.0 0.017 14.5 0.0 1.0 1 0 0 1 1 1 0 NMT1-like family DUF35 PF01796.12 gi|312137373|ref|YP_004004710.1| - 0.024 14.8 0.1 0.027 14.6 0.0 1.1 1 0 0 1 1 1 0 DUF35 OB-fold domain Rad9_Rad53_bind PF08605.5 gi|312137373|ref|YP_004004710.1| - 0.038 13.7 0.1 0.043 13.5 0.1 1.3 1 1 0 1 1 1 0 Fungal Rad9-like Rad53-binding S1 PF00575.18 gi|312137373|ref|YP_004004710.1| - 0.095 12.8 0.8 0.39 10.8 0.6 1.8 1 1 0 1 1 1 0 S1 RNA binding domain DUF3583 PF12126.3 gi|312137373|ref|YP_004004710.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3583) FmdE PF02663.9 gi|312137374|ref|YP_004004711.1| - 4.2e-28 97.8 0.0 5.5e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon C1_3 PF07649.7 gi|312137374|ref|YP_004004711.1| - 0.011 15.7 4.3 0.025 14.5 3.0 1.6 1 0 0 1 1 1 0 C1-like domain DZR PF12773.2 gi|312137374|ref|YP_004004711.1| - 0.017 14.9 1.7 0.039 13.7 1.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|312137374|ref|YP_004004711.1| - 0.096 12.3 0.3 0.2 11.3 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|312137374|ref|YP_004004711.1| - 0.22 11.3 2.0 0.64 9.8 1.5 1.7 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GXGXG PF01493.14 gi|312137375|ref|YP_004004712.1| - 4.4e-47 159.7 25.5 5.2e-47 159.4 17.0 1.6 1 1 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.16 gi|312137375|ref|YP_004004712.1| - 1.2e-13 50.8 0.0 2.2e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|312137376|ref|YP_004004713.1| - 8.1e-18 64.3 0.0 3.1e-17 62.4 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|312137376|ref|YP_004004713.1| - 7.3e-05 22.5 0.9 0.0019 17.9 0.1 3.1 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|312137376|ref|YP_004004713.1| - 0.0041 16.6 0.0 0.0079 15.7 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit MobB PF03205.9 gi|312137377|ref|YP_004004714.1| - 3.1e-24 85.2 0.1 6.2e-24 84.2 0.0 1.6 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.8 gi|312137377|ref|YP_004004714.1| - 5.2e-10 38.7 2.0 8.6e-10 38.0 1.4 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster NTPase_1 PF03266.10 gi|312137377|ref|YP_004004714.1| - 3.3e-05 23.6 0.1 8.4e-05 22.3 0.1 1.7 1 0 0 1 1 1 1 NTPase AAA_14 PF13173.1 gi|312137377|ref|YP_004004714.1| - 0.00035 20.4 0.2 0.00063 19.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|312137377|ref|YP_004004714.1| - 0.0023 17.6 1.9 0.0023 17.6 1.3 2.0 2 1 1 3 3 3 1 Archaeal ATPase Miro PF08477.8 gi|312137377|ref|YP_004004714.1| - 0.0028 18.1 0.0 0.006 17.0 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AAA_16 PF13191.1 gi|312137377|ref|YP_004004714.1| - 0.014 15.4 0.0 0.025 14.5 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|312137377|ref|YP_004004714.1| - 0.025 14.1 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|312137377|ref|YP_004004714.1| - 0.028 13.8 0.1 0.056 12.8 0.1 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|312137377|ref|YP_004004714.1| - 0.031 13.0 0.3 0.049 12.4 0.2 1.3 1 0 0 1 1 1 0 ArgK protein DLIC PF05783.6 gi|312137377|ref|YP_004004714.1| - 0.045 12.4 0.1 0.056 12.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_22 PF13401.1 gi|312137377|ref|YP_004004714.1| - 0.049 13.7 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|312137377|ref|YP_004004714.1| - 0.061 14.1 0.5 0.086 13.6 0.3 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|312137377|ref|YP_004004714.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|312137377|ref|YP_004004714.1| - 0.074 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|312137377|ref|YP_004004714.1| - 0.089 12.1 0.5 0.16 11.3 0.4 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.4 gi|312137377|ref|YP_004004714.1| - 0.16 11.4 3.4 0.21 11.0 0.2 2.3 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PyrI PF01948.13 gi|312137378|ref|YP_004004715.1| - 2.6e-39 133.1 6.1 3.8e-39 132.6 4.2 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|312137378|ref|YP_004004715.1| - 3.4e-22 77.6 3.2 3.4e-22 77.6 2.2 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF465 PF04325.8 gi|312137378|ref|YP_004004715.1| - 0.02 14.5 0.1 0.061 13.0 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF465) SecD_SecF PF02355.11 gi|312137379|ref|YP_004004716.1| - 5.3e-20 71.4 10.0 9.2e-20 70.6 6.9 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|312137379|ref|YP_004004716.1| - 8.1e-07 28.0 5.2 1.2e-06 27.4 3.6 1.3 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|312137379|ref|YP_004004716.1| - 2.2e-06 26.5 0.3 5.1e-06 25.3 0.2 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.14 gi|312137379|ref|YP_004004716.1| - 0.15 9.4 7.0 0.22 8.9 4.8 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|312137380|ref|YP_004004717.1| - 6.9e-42 142.7 14.3 1.2e-41 141.9 9.9 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|312137380|ref|YP_004004717.1| - 7.8e-06 24.8 0.4 2.1e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.13 gi|312137380|ref|YP_004004717.1| - 0.65 7.8 22.1 0.87 7.4 13.9 2.0 1 1 1 2 2 2 0 Patched family DUF1212 PF06738.7 gi|312137380|ref|YP_004004717.1| - 6 6.2 15.7 0.2 11.0 4.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Flavodoxin_4 PF12682.2 gi|312137381|ref|YP_004004718.1| - 4.5e-20 71.5 0.6 2.3e-19 69.3 0.4 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|312137381|ref|YP_004004718.1| - 7.9e-13 48.1 1.0 8.2e-06 25.3 0.1 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|312137381|ref|YP_004004718.1| - 1.7e-12 47.5 0.7 8.9e-06 25.7 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|312137381|ref|YP_004004718.1| - 4.6e-08 33.1 0.1 2.1e-06 27.8 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|312137381|ref|YP_004004718.1| - 0.00044 19.7 0.0 0.00053 19.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF2963 PF11178.3 gi|312137381|ref|YP_004004718.1| - 0.51 9.8 6.7 1.6 8.2 4.7 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) Semialdhyde_dh PF01118.19 gi|312137382|ref|YP_004004719.1| - 5.8e-37 126.6 0.0 1e-36 125.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|312137382|ref|YP_004004719.1| - 1.1e-29 103.6 0.0 1.9e-29 102.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|312137382|ref|YP_004004719.1| - 7.9e-05 22.5 0.0 0.00039 20.3 0.0 2.1 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|312137382|ref|YP_004004719.1| - 0.0006 20.3 0.1 0.0012 19.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|312137382|ref|YP_004004719.1| - 0.016 15.4 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Saccharop_dh PF03435.13 gi|312137382|ref|YP_004004719.1| - 0.037 13.0 0.0 0.044 12.7 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase CTP_transf_2 PF01467.21 gi|312137383|ref|YP_004004720.1| - 9.2e-18 64.7 0.1 1.8e-17 63.8 0.1 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|312137383|ref|YP_004004720.1| - 0.004 16.8 0.1 0.02 14.5 0.1 2.0 1 1 0 1 1 1 1 FAD synthetase Urm1 PF09138.6 gi|312137383|ref|YP_004004720.1| - 0.05 13.7 0.2 0.072 13.2 0.1 1.4 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Glyco_trans_4_2 PF13477.1 gi|312137383|ref|YP_004004720.1| - 1.1 9.0 3.9 14 5.4 0.1 2.3 1 1 1 2 2 2 0 Glycosyl transferase 4-like His_biosynth PF00977.16 gi|312137384|ref|YP_004004721.1| - 1.5e-77 259.9 5.7 1.7e-77 259.7 4.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|312137384|ref|YP_004004721.1| - 3e-07 29.9 7.6 0.00061 19.1 0.3 2.2 2 0 0 2 2 2 2 PcrB family NMO PF03060.10 gi|312137384|ref|YP_004004721.1| - 8.1e-07 28.4 0.1 0.0024 17.0 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|312137384|ref|YP_004004721.1| - 9.4e-07 28.1 0.3 0.024 13.7 0.1 2.3 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|312137384|ref|YP_004004721.1| - 9.5e-07 27.9 1.0 0.0025 16.7 0.1 2.4 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|312137384|ref|YP_004004721.1| - 3.4e-06 26.1 0.4 0.0065 15.3 0.1 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|312137384|ref|YP_004004721.1| - 3.9e-06 26.0 1.2 0.0015 17.6 0.2 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|312137384|ref|YP_004004721.1| - 0.00023 19.8 3.9 0.016 13.7 0.4 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|312137384|ref|YP_004004721.1| - 0.00032 19.7 2.1 0.013 14.4 0.1 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.16 gi|312137384|ref|YP_004004721.1| - 0.00051 19.1 0.3 0.0096 14.9 0.1 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|312137384|ref|YP_004004721.1| - 0.00076 18.5 2.0 0.0048 15.8 0.2 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|312137384|ref|YP_004004721.1| - 0.0018 17.1 0.3 0.34 9.7 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TIM PF00121.13 gi|312137384|ref|YP_004004721.1| - 0.0086 15.1 5.0 0.076 12.0 1.1 2.1 2 0 0 2 2 2 1 Triosephosphate isomerase SBDS PF01172.13 gi|312137384|ref|YP_004004721.1| - 0.0089 15.7 0.2 0.022 14.5 0.0 1.8 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein IMPDH PF00478.20 gi|312137384|ref|YP_004004721.1| - 0.017 14.0 0.6 1.2 7.9 0.1 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|312137384|ref|YP_004004721.1| - 0.069 12.2 0.8 2.4 7.2 0.1 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Redoxin PF08534.5 gi|312137384|ref|YP_004004721.1| - 0.07 12.6 0.0 1.3 8.5 0.0 2.3 2 1 0 2 2 2 0 Redoxin NAD_binding_1 PF00175.16 gi|312137385|ref|YP_004004722.1| - 8.9e-14 51.9 0.0 1.5e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|312137385|ref|YP_004004722.1| - 1.8e-12 46.4 8.8 3.5e-12 45.6 6.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|312137385|ref|YP_004004722.1| - 3.1e-07 30.4 0.0 5.7e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|312137385|ref|YP_004004722.1| - 0.031 14.1 0.0 1 9.2 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain UPF0118 PF01594.11 gi|312137386|ref|YP_004004723.1| - 4.9e-47 160.5 43.8 7.4e-47 159.9 30.4 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF20 ATP_bind_3 PF01171.15 gi|312137387|ref|YP_004004724.1| - 3.2e-10 39.7 0.0 6.9e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|312137387|ref|YP_004004724.1| - 1.5e-06 28.1 0.0 2.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|312137387|ref|YP_004004724.1| - 4.4e-05 22.8 0.1 0.00025 20.3 0.0 2.1 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|312137387|ref|YP_004004724.1| - 0.00017 20.2 0.2 0.00077 18.1 0.1 2.0 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.9 gi|312137387|ref|YP_004004724.1| - 0.021 14.2 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF2392 PF10288.4 gi|312137387|ref|YP_004004724.1| - 0.022 15.0 0.2 0.1 12.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2392) Asn_synthase PF00733.16 gi|312137387|ref|YP_004004724.1| - 0.056 12.9 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase zf-C2H2_3 PF13878.1 gi|312137387|ref|YP_004004724.1| - 0.089 12.3 0.9 15 5.2 0.0 3.5 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO RecR PF02132.10 gi|312137387|ref|YP_004004724.1| - 5.6 6.4 8.7 0.61 9.5 0.8 2.7 3 0 0 3 3 3 0 RecR protein DFP PF04127.10 gi|312137388|ref|YP_004004725.1| - 1.4e-54 184.5 1.0 6.5e-53 179.0 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|312137388|ref|YP_004004725.1| - 6.5e-25 87.2 1.9 6.5e-25 87.2 1.3 2.2 2 1 0 2 2 2 1 Flavoprotein NAD_binding_10 PF13460.1 gi|312137388|ref|YP_004004725.1| - 0.028 14.4 0.0 0.25 11.3 0.0 2.1 2 0 0 2 2 2 0 NADH(P)-binding Ret_tiss PF10044.4 gi|312137388|ref|YP_004004725.1| - 0.094 13.2 0.0 20 5.8 0.0 2.8 2 0 0 2 2 2 0 Retinal tissue protein KH_5 PF13184.1 gi|312137389|ref|YP_004004726.1| - 1.5e-13 50.3 8.5 2.8e-13 49.4 2.8 2.3 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_S7e PF01251.13 gi|312137389|ref|YP_004004726.1| - 1.3e-06 28.0 0.6 6.6e-06 25.7 0.3 1.9 1 1 1 2 2 2 1 Ribosomal protein S7e KH_2 PF07650.12 gi|312137389|ref|YP_004004726.1| - 0.0026 17.2 8.9 0.0026 17.2 6.1 2.1 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|312137389|ref|YP_004004726.1| - 0.0029 17.2 8.0 0.0064 16.1 5.5 1.9 1 1 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|312137389|ref|YP_004004726.1| - 0.011 15.3 8.8 0.031 13.8 2.5 2.7 3 1 0 3 3 3 0 KH domain KH_3 PF13014.1 gi|312137389|ref|YP_004004726.1| - 0.04 13.5 2.1 0.04 13.5 1.5 2.2 2 0 0 2 2 2 0 KH domain Peptidase_S24 PF00717.18 gi|312137389|ref|YP_004004726.1| - 0.052 13.1 0.9 0.11 12.2 0.6 1.5 1 0 0 1 1 1 0 Peptidase S24-like DSPc PF00782.15 gi|312137389|ref|YP_004004726.1| - 0.096 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain Lpp-LpqN PF10738.4 gi|312137390|ref|YP_004004727.1| - 0.00079 18.7 0.1 0.00093 18.5 0.1 1.1 1 0 0 1 1 1 1 Probable lipoprotein LpqN PsbP PF01789.11 gi|312137390|ref|YP_004004727.1| - 0.04 13.3 0.1 0.51 9.7 0.1 2.1 1 1 0 1 1 1 0 PsbP GvpG PF05120.7 gi|312137391|ref|YP_004004728.1| - 0.038 13.7 1.9 0.12 12.2 1.3 1.8 1 1 0 1 1 1 0 Gas vesicle protein G ABC2_membrane_3 PF12698.2 gi|312137391|ref|YP_004004728.1| - 0.23 10.4 2.7 0.15 11.0 0.5 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF334 PF03904.8 gi|312137391|ref|YP_004004728.1| - 0.72 9.1 6.5 1.1 8.5 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF2113 PF09886.4 gi|312137392|ref|YP_004004729.1| - 1.7e-53 180.6 1.5 1.9e-53 180.4 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Radical_SAM PF04055.16 gi|312137393|ref|YP_004004730.1| - 7.3e-22 78.2 0.6 1.2e-21 77.6 0.3 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137393|ref|YP_004004730.1| - 2.8e-07 30.7 0.7 7.5e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137393|ref|YP_004004730.1| - 3.1e-07 30.4 0.3 8.6e-07 28.9 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Rpr2 PF04032.11 gi|312137393|ref|YP_004004730.1| - 0.00041 20.1 0.2 0.00041 20.1 0.2 2.2 2 1 0 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2368 PF10166.4 gi|312137393|ref|YP_004004730.1| - 0.051 13.1 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) Met_10 PF02475.11 gi|312137394|ref|YP_004004731.1| - 1.4e-75 253.2 3.5 2.1e-75 252.7 2.4 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|312137394|ref|YP_004004731.1| - 4.6e-12 45.7 1.4 8.4e-11 41.6 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|312137394|ref|YP_004004731.1| - 4e-11 43.4 0.0 1.2e-10 41.9 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|312137394|ref|YP_004004731.1| - 1.3e-10 40.9 0.0 2.4e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|312137394|ref|YP_004004731.1| - 4.9e-10 39.4 0.0 8.8e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|312137394|ref|YP_004004731.1| - 2.1e-09 36.8 0.3 3.8e-09 35.9 0.1 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|312137394|ref|YP_004004731.1| - 4.4e-09 35.8 0.0 7.9e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|312137394|ref|YP_004004731.1| - 6e-06 25.9 0.0 1.4e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|312137394|ref|YP_004004731.1| - 1.5e-05 24.5 0.0 3.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|312137394|ref|YP_004004731.1| - 3e-05 24.4 0.0 0.00086 19.7 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|312137394|ref|YP_004004731.1| - 0.00012 21.2 1.1 0.0014 17.6 0.2 2.9 2 1 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.14 gi|312137394|ref|YP_004004731.1| - 0.00012 22.1 0.0 0.0003 20.8 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|312137394|ref|YP_004004731.1| - 0.00012 21.2 0.2 0.00046 19.3 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|312137394|ref|YP_004004731.1| - 0.0013 18.3 0.0 0.0033 17.0 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF43 PF01861.11 gi|312137394|ref|YP_004004731.1| - 0.0018 17.2 2.9 0.0022 17.0 0.1 2.2 2 1 0 2 2 2 1 Protein of unknown function DUF43 Methyltransf_25 PF13649.1 gi|312137394|ref|YP_004004731.1| - 0.0073 16.6 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|312137394|ref|YP_004004731.1| - 0.0082 16.9 0.0 0.027 15.2 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain MethyltransfD12 PF02086.10 gi|312137394|ref|YP_004004731.1| - 0.011 15.2 0.3 0.011 15.2 0.2 2.2 2 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_16 PF10294.4 gi|312137394|ref|YP_004004731.1| - 0.02 14.3 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase ADH_zinc_N PF00107.21 gi|312137394|ref|YP_004004731.1| - 0.023 14.2 0.0 0.079 12.5 0.0 1.9 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_11 PF08241.7 gi|312137394|ref|YP_004004731.1| - 0.028 14.8 0.0 0.13 12.8 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|312137394|ref|YP_004004731.1| - 0.029 14.1 0.0 0.085 12.5 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.11 gi|312137394|ref|YP_004004731.1| - 0.029 13.2 0.1 0.046 12.6 0.0 1.4 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase RrnaAD PF00398.15 gi|312137394|ref|YP_004004731.1| - 0.033 13.2 0.0 0.074 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TrkA_N PF02254.13 gi|312137394|ref|YP_004004731.1| - 0.041 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain Nol1_Nop2_Fmu PF01189.12 gi|312137394|ref|YP_004004731.1| - 0.064 12.6 0.0 0.46 9.8 0.0 2.0 1 1 1 2 2 2 0 NOL1/NOP2/sun family RNA_pol_Rpa2_4 PF06883.7 gi|312137394|ref|YP_004004731.1| - 0.12 12.3 0.1 0.42 10.5 0.0 1.9 1 0 0 1 1 1 0 RNA polymerase I, Rpa2 specific domain IF-2B PF01008.12 gi|312137395|ref|YP_004004732.1| - 2.3e-82 276.1 0.6 3.6e-82 275.5 0.4 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family YokU PF14122.1 gi|312137395|ref|YP_004004732.1| - 0.089 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 YokU-like protein TP_methylase PF00590.15 gi|312137396|ref|YP_004004733.1| - 1.6e-35 122.7 0.0 2.9e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases zf-like PF04071.7 gi|312137396|ref|YP_004004733.1| - 5.2e-27 93.3 13.5 1e-26 92.4 9.4 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain Alba PF01918.16 gi|312137396|ref|YP_004004733.1| - 0.0076 15.8 0.2 0.028 13.9 0.1 2.0 1 0 0 1 1 1 1 Alba DNA_pol_E_B PF04042.11 gi|312137398|ref|YP_004004735.1| - 3.2e-17 62.4 0.0 4.8e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|312137398|ref|YP_004004735.1| - 1.4e-12 47.6 0.0 2.9e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312137398|ref|YP_004004735.1| - 5.1e-09 35.8 0.1 9.7e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|312137398|ref|YP_004004735.1| - 0.00011 21.9 1.9 0.0003 20.5 1.3 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain UPF0278 PF08745.6 gi|312137399|ref|YP_004004736.1| - 3.4e-90 300.8 0.3 3.9e-90 300.6 0.2 1.0 1 0 0 1 1 1 1 UPF0278 family rve_2 PF13333.1 gi|312137399|ref|YP_004004736.1| - 0.0014 18.6 0.2 0.78 9.8 0.0 2.9 2 1 1 3 3 3 2 Integrase core domain tRNA-synt_His PF13393.1 gi|312137400|ref|YP_004004737.1| - 3.2e-71 239.9 0.0 4.2e-71 239.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|312137400|ref|YP_004004737.1| - 1.5e-31 109.3 0.2 2.6e-31 108.5 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|312137400|ref|YP_004004737.1| - 6.3e-22 77.3 0.7 1.2e-21 76.4 0.5 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|312137400|ref|YP_004004737.1| - 1.2e-07 30.8 0.1 0.00011 21.0 0.1 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) HGTP_anticodon2 PF12745.2 gi|312137400|ref|YP_004004737.1| - 1.3e-05 24.5 0.1 1.9e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs tRNA-synt_2d PF01409.15 gi|312137400|ref|YP_004004737.1| - 0.00019 20.7 0.0 0.00039 19.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) MA3 PF02847.12 gi|312137400|ref|YP_004004737.1| - 0.0068 16.0 0.1 1.8 8.2 0.0 3.3 2 1 1 3 3 3 1 MA3 domain PRA-CH PF01502.13 gi|312137401|ref|YP_004004738.1| - 4.5e-38 128.7 2.3 6.8e-38 128.1 1.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Tropomodulin PF03250.9 gi|312137401|ref|YP_004004738.1| - 0.053 13.0 0.1 0.088 12.3 0.1 1.4 1 0 0 1 1 1 0 Tropomodulin T2SE PF00437.15 gi|312137402|ref|YP_004004739.1| - 9.6e-13 47.6 0.1 2.5e-12 46.2 0.1 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.16 gi|312137402|ref|YP_004004739.1| - 2.7e-10 40.6 0.0 1e-09 38.7 0.0 2.1 2 0 0 2 2 1 1 PIN domain KH_1 PF00013.24 gi|312137402|ref|YP_004004739.1| - 1.9e-09 37.0 1.6 1.9e-09 37.0 1.1 2.3 2 0 0 2 2 1 1 KH domain AAA_17 PF13207.1 gi|312137402|ref|YP_004004739.1| - 4.2e-06 27.5 0.1 3.2e-05 24.7 0.0 2.5 2 1 1 3 3 1 1 AAA domain KH_3 PF13014.1 gi|312137402|ref|YP_004004739.1| - 2.9e-05 23.5 1.1 2.9e-05 23.5 0.8 2.2 2 0 0 2 2 1 1 KH domain AAA_18 PF13238.1 gi|312137402|ref|YP_004004739.1| - 4.8e-05 23.6 0.4 0.0009 19.5 0.0 3.2 4 0 0 4 4 4 1 AAA domain PIN_4 PF13638.1 gi|312137402|ref|YP_004004739.1| - 9.8e-05 22.4 2.3 0.0001 22.4 0.0 2.3 3 0 0 3 3 2 1 PIN domain KH_4 PF13083.1 gi|312137402|ref|YP_004004739.1| - 0.00013 21.4 1.9 0.082 12.5 0.1 3.3 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|312137402|ref|YP_004004739.1| - 0.00029 20.3 7.2 0.00042 19.8 2.4 2.9 2 0 0 2 2 2 1 KH domain ABC_tran PF00005.22 gi|312137402|ref|YP_004004739.1| - 0.00035 20.8 0.0 0.0014 18.9 0.0 2.0 2 0 0 2 2 1 1 ABC transporter AAA_19 PF13245.1 gi|312137402|ref|YP_004004739.1| - 0.00056 19.6 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|312137402|ref|YP_004004739.1| - 0.001 18.7 0.0 0.004 16.8 0.0 2.1 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|312137402|ref|YP_004004739.1| - 0.0015 17.9 0.0 0.0083 15.5 0.0 2.3 2 1 1 3 3 2 1 Thymidylate kinase AAA_22 PF13401.1 gi|312137402|ref|YP_004004739.1| - 0.0015 18.6 0.0 0.015 15.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|312137402|ref|YP_004004739.1| - 0.0035 16.8 0.0 0.027 13.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|312137402|ref|YP_004004739.1| - 0.0037 16.3 0.0 0.01 14.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|312137402|ref|YP_004004739.1| - 0.0045 16.8 0.0 0.017 14.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|312137402|ref|YP_004004739.1| - 0.0051 17.0 0.0 0.014 15.6 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|312137402|ref|YP_004004739.1| - 0.0052 16.6 0.0 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|312137402|ref|YP_004004739.1| - 0.0067 15.5 0.0 0.022 13.8 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|312137402|ref|YP_004004739.1| - 0.0072 15.9 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|312137402|ref|YP_004004739.1| - 0.0073 15.7 0.0 0.019 14.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|312137402|ref|YP_004004739.1| - 0.0079 15.6 0.0 0.031 13.7 0.0 2.0 3 0 0 3 3 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|312137402|ref|YP_004004739.1| - 0.0097 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|312137402|ref|YP_004004739.1| - 0.017 14.5 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|312137402|ref|YP_004004739.1| - 0.018 14.2 0.0 0.076 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KH_5 PF13184.1 gi|312137402|ref|YP_004004739.1| - 0.019 14.7 0.7 0.019 14.7 0.5 2.4 2 0 0 2 2 1 0 NusA-like KH domain ATP_bind_1 PF03029.12 gi|312137402|ref|YP_004004739.1| - 0.019 14.5 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DinI PF06183.8 gi|312137402|ref|YP_004004739.1| - 0.023 14.6 0.1 0.095 12.7 0.0 2.1 1 0 0 1 1 1 0 DinI-like family Sigma54_activ_2 PF14532.1 gi|312137402|ref|YP_004004739.1| - 0.031 14.3 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|312137402|ref|YP_004004739.1| - 0.032 13.6 0.0 0.086 12.2 0.0 1.7 2 0 0 2 2 1 0 AAA-like domain RNA_helicase PF00910.17 gi|312137402|ref|YP_004004739.1| - 0.04 14.0 0.0 0.12 12.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|312137402|ref|YP_004004739.1| - 0.048 12.8 0.0 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|312137402|ref|YP_004004739.1| - 0.052 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|312137402|ref|YP_004004739.1| - 0.053 12.9 0.0 0.17 11.3 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|312137402|ref|YP_004004739.1| - 0.16 12.3 0.1 0.16 12.3 0.0 3.2 3 1 0 3 3 3 0 AAA domain AP_endonuc_2 PF01261.19 gi|312137403|ref|YP_004004740.1| - 7.6e-24 84.1 0.1 9.5e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AMP-binding_C_2 PF14535.1 gi|312137403|ref|YP_004004740.1| - 0.057 13.4 0.6 3.4 7.7 0.1 2.9 2 1 0 2 2 2 0 AMP-binding enzyme C-terminal domain DUF2202 PF09968.4 gi|312137403|ref|YP_004004740.1| - 0.086 12.5 3.8 0.065 12.9 1.0 1.9 2 1 0 2 2 2 0 Uncharacterized protein domain (DUF2202) Glyco_hydro_97 PF10566.4 gi|312137403|ref|YP_004004740.1| - 0.12 11.5 0.0 0.27 10.3 0.0 1.5 1 1 0 1 1 1 0 Glycoside hydrolase 97 F420_oxidored PF03807.12 gi|312137404|ref|YP_004004741.1| - 1e-23 83.5 1.4 2.1e-23 82.5 1.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|312137404|ref|YP_004004741.1| - 4.9e-08 32.5 0.7 2e-07 30.5 0.2 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|312137404|ref|YP_004004741.1| - 6.3e-06 26.1 0.4 2e-05 24.4 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|312137404|ref|YP_004004741.1| - 1.7e-05 24.8 0.2 2.5e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|312137404|ref|YP_004004741.1| - 3.3e-05 23.3 0.3 7.1e-05 22.2 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|312137404|ref|YP_004004741.1| - 3.4e-05 22.8 0.4 6e-05 22.0 0.3 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|312137404|ref|YP_004004741.1| - 6.1e-05 22.8 0.9 0.00021 21.0 0.5 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|312137404|ref|YP_004004741.1| - 0.00013 21.3 0.3 0.00027 20.2 0.2 1.5 1 0 0 1 1 1 1 NmrA-like family Semialdhyde_dh PF01118.19 gi|312137404|ref|YP_004004741.1| - 0.00033 20.9 0.5 0.0015 18.8 0.1 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|312137404|ref|YP_004004741.1| - 0.0014 17.7 0.1 0.0022 17.1 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|312137404|ref|YP_004004741.1| - 0.0079 15.2 0.2 0.016 14.2 0.1 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|312137404|ref|YP_004004741.1| - 0.014 15.3 0.9 0.014 15.3 0.6 1.8 2 0 0 2 2 2 0 TrkA-N domain TBP PF00352.16 gi|312137404|ref|YP_004004741.1| - 0.021 14.1 0.1 0.057 12.7 0.0 1.7 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) 3HCDH_N PF02737.13 gi|312137404|ref|YP_004004741.1| - 0.022 14.4 0.4 0.04 13.5 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|312137404|ref|YP_004004741.1| - 0.036 13.4 1.0 0.36 10.1 0.7 2.3 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.20 gi|312137404|ref|YP_004004741.1| - 0.047 13.6 0.4 0.14 12.0 0.2 1.8 2 1 0 2 2 2 0 short chain dehydrogenase Rossmann-like PF10727.4 gi|312137404|ref|YP_004004741.1| - 0.077 12.7 0.8 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 Rossmann-like domain PTS_IIB PF02302.12 gi|312137404|ref|YP_004004741.1| - 0.32 11.5 4.8 0.43 11.1 0.4 2.4 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit SIS PF01380.17 gi|312137405|ref|YP_004004742.1| - 3.2e-17 62.3 0.1 4.6e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|312137405|ref|YP_004004742.1| - 7.8e-11 41.8 3.8 7.6e-06 25.6 0.3 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|312137405|ref|YP_004004742.1| - 0.023 13.7 1.3 0.034 13.2 0.6 1.5 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain StbA PF06406.6 gi|312137405|ref|YP_004004742.1| - 0.051 12.5 1.3 0.066 12.1 0.9 1.2 1 0 0 1 1 1 0 StbA protein tRNA_int_endo PF01974.12 gi|312137406|ref|YP_004004743.1| - 3.2e-32 110.1 1.5 8.6e-32 108.7 0.9 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|312137406|ref|YP_004004743.1| - 3e-14 52.3 0.0 5.8e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|312137406|ref|YP_004004743.1| - 0.049 13.8 0.3 0.32 11.2 0.1 2.0 1 1 1 2 2 2 0 Sen15 protein tRNA-synt_1b PF00579.20 gi|312137407|ref|YP_004004744.1| - 1.3e-58 198.4 0.0 1.6e-58 198.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|312137407|ref|YP_004004744.1| - 0.03 13.0 0.0 0.16 10.6 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF4182 PF13790.1 gi|312137407|ref|YP_004004744.1| - 2.5 7.9 7.1 1.7 8.5 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4182) DUF95 PF01944.12 gi|312137408|ref|YP_004004745.1| - 1e-30 106.6 18.9 1.3e-30 106.3 13.1 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 PALP PF00291.20 gi|312137409|ref|YP_004004746.1| - 6.3e-73 245.6 0.1 7.3e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Tnp_zf-ribbon_2 PF13842.1 gi|312137409|ref|YP_004004746.1| - 0.012 15.9 0.2 0.03 14.7 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon TF_Zn_Ribbon PF08271.7 gi|312137409|ref|YP_004004746.1| - 0.017 14.3 3.7 0.093 12.0 2.4 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|312137409|ref|YP_004004746.1| - 0.032 13.9 0.9 0.082 12.6 0.6 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF3133 PF11331.3 gi|312137409|ref|YP_004004746.1| - 0.034 13.7 0.0 1.3 8.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Desulfoferrod_N PF06397.7 gi|312137409|ref|YP_004004746.1| - 0.038 13.3 2.6 0.49 9.8 0.0 2.6 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain C1_2 PF03107.11 gi|312137409|ref|YP_004004746.1| - 0.071 13.2 1.5 0.14 12.2 1.0 1.5 1 0 0 1 1 1 0 C1 domain HypA PF01155.14 gi|312137409|ref|YP_004004746.1| - 0.13 11.9 0.3 0.26 10.9 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CBFD_NFYB_HMF PF00808.18 gi|312137410|ref|YP_004004747.1| - 3.5e-23 81.4 0.7 3.8e-23 81.3 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|312137410|ref|YP_004004747.1| - 2.3e-13 50.0 0.1 2.9e-13 49.7 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|312137410|ref|YP_004004747.1| - 3.2e-06 27.2 0.0 3.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|312137410|ref|YP_004004747.1| - 9.8e-06 25.4 0.3 1.1e-05 25.2 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.8 gi|312137410|ref|YP_004004747.1| - 0.00094 19.4 0.2 0.0012 19.1 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|312137410|ref|YP_004004747.1| - 0.0027 17.4 0.1 0.0029 17.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.10 gi|312137410|ref|YP_004004747.1| - 0.0057 16.4 0.0 0.0069 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit EPSP_synthase PF00275.15 gi|312137410|ref|YP_004004747.1| - 0.037 12.4 0.0 0.041 12.2 0.0 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CENP-T PF15511.1 gi|312137410|ref|YP_004004747.1| - 0.042 13.0 0.1 0.044 13.0 0.1 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Bromo_TP PF07524.8 gi|312137410|ref|YP_004004747.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated PCP_red PF08369.5 gi|312137410|ref|YP_004004747.1| - 0.14 12.0 1.2 0.26 11.1 0.2 1.9 2 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Arginase PF00491.16 gi|312137411|ref|YP_004004748.1| - 2.6e-72 243.4 0.0 2.9e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.2 gi|312137411|ref|YP_004004748.1| - 0.016 15.4 0.7 0.032 14.4 0.4 1.5 1 1 0 1 1 1 0 UPF0489 domain eIF-5a PF01287.15 gi|312137412|ref|YP_004004749.1| - 4.5e-18 64.9 0.7 7.4e-18 64.2 0.5 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|312137412|ref|YP_004004749.1| - 0.0016 18.2 0.3 0.0059 16.4 0.1 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|312137412|ref|YP_004004749.1| - 0.0083 15.7 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PvlArgDC PF01862.11 gi|312137413|ref|YP_004004750.1| - 3.1e-41 140.7 0.9 3.4e-41 140.5 0.6 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Pox_T4_C PF04490.7 gi|312137413|ref|YP_004004750.1| - 0.022 14.4 0.3 0.024 14.3 0.2 1.1 1 0 0 1 1 1 0 Poxvirus T4 protein, C terminus DUF3554 PF12074.3 gi|312137413|ref|YP_004004750.1| - 0.036 13.5 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3554) Inositol_P PF00459.20 gi|312137414|ref|YP_004004751.1| - 1.1e-37 129.8 0.0 1.3e-37 129.6 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|312137414|ref|YP_004004751.1| - 1.5e-08 33.8 0.1 6e-06 25.3 0.0 2.1 2 0 0 2 2 2 2 Fructose-1-6-bisphosphatase NAD_kinase PF01513.16 gi|312137415|ref|YP_004004752.1| - 1.6e-66 223.9 1.0 1.9e-66 223.7 0.7 1.1 1 0 0 1 1 1 1 ATP-NAD kinase ArsC PF03960.10 gi|312137415|ref|YP_004004752.1| - 0.012 15.6 0.1 0.056 13.5 0.0 2.0 2 0 0 2 2 2 0 ArsC family DAGK_cat PF00781.19 gi|312137415|ref|YP_004004752.1| - 0.014 14.8 0.1 0.034 13.5 0.1 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Rb_C PF08934.5 gi|312137415|ref|YP_004004752.1| - 0.078 12.6 0.0 0.6 9.7 0.0 2.1 2 0 0 2 2 2 0 Rb C-terminal domain Mur_ligase_M PF08245.7 gi|312137416|ref|YP_004004753.1| - 4.2e-08 33.4 0.1 7.3e-08 32.6 0.1 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Porphobil_deam PF01379.15 gi|312137417|ref|YP_004004754.1| - 8.2e-70 234.0 0.1 1e-69 233.7 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|312137417|ref|YP_004004754.1| - 2.8e-17 62.5 0.0 5.8e-17 61.5 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|312137417|ref|YP_004004754.1| - 0.0077 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 GFO_IDH_MocA PF01408.17 gi|312137418|ref|YP_004004755.1| - 3e-33 114.8 0.3 5.4e-33 114.0 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|312137418|ref|YP_004004755.1| - 3.4e-11 42.9 0.0 5.7e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|312137418|ref|YP_004004755.1| - 8e-05 22.5 0.4 0.00017 21.4 0.3 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|312137418|ref|YP_004004755.1| - 0.0013 18.9 0.1 0.0027 18.0 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|312137418|ref|YP_004004755.1| - 0.018 15.4 0.1 0.036 14.4 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|312137418|ref|YP_004004755.1| - 0.02 13.6 0.5 0.047 12.4 0.3 1.6 1 1 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.14 gi|312137418|ref|YP_004004755.1| - 0.022 15.2 0.5 0.057 13.9 0.1 1.9 1 1 0 1 1 1 0 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|312137418|ref|YP_004004755.1| - 0.037 13.1 0.1 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|312137418|ref|YP_004004755.1| - 0.046 13.0 0.2 0.076 12.3 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Pterin_bind PF00809.17 gi|312137418|ref|YP_004004755.1| - 0.095 12.0 0.3 0.15 11.3 0.2 1.4 1 0 0 1 1 1 0 Pterin binding enzyme DXP_reductoisom PF02670.11 gi|312137418|ref|YP_004004755.1| - 0.1 13.1 0.3 1.6 9.2 0.1 2.6 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Pribosyltran PF00156.22 gi|312137419|ref|YP_004004756.1| - 1.2e-20 73.4 3.0 2.2e-20 72.6 1.6 1.7 1 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|312137419|ref|YP_004004756.1| - 7.7e-05 21.9 0.1 0.0001 21.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|312137419|ref|YP_004004756.1| - 0.00031 20.2 0.1 0.00086 18.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|312137419|ref|YP_004004756.1| - 0.00083 18.9 0.3 0.011 15.3 0.1 2.5 2 0 0 2 2 2 1 HTH domain PRTase_2 PF15609.1 gi|312137419|ref|YP_004004756.1| - 0.0011 18.3 0.2 0.0021 17.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase HTH_10 PF04967.7 gi|312137419|ref|YP_004004756.1| - 0.0028 17.2 0.0 0.0055 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|312137419|ref|YP_004004756.1| - 0.0064 15.7 0.0 0.024 13.9 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|312137419|ref|YP_004004756.1| - 0.012 14.9 0.1 0.022 14.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pribosyl_synth PF14572.1 gi|312137419|ref|YP_004004756.1| - 0.021 14.5 0.4 0.031 14.0 0.3 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain HTH_28 PF13518.1 gi|312137419|ref|YP_004004756.1| - 0.022 14.7 0.1 0.39 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|312137419|ref|YP_004004756.1| - 0.022 14.6 0.0 0.051 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|312137419|ref|YP_004004756.1| - 0.031 13.6 0.0 0.066 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|312137419|ref|YP_004004756.1| - 0.041 13.4 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.2 gi|312137419|ref|YP_004004756.1| - 0.044 14.0 0.0 0.15 12.3 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|312137419|ref|YP_004004756.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|312137419|ref|YP_004004756.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1727 PF08353.5 gi|312137420|ref|YP_004004757.1| - 1.7e-37 127.5 0.2 3.8e-37 126.3 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1727) Mur_ligase_M PF08245.7 gi|312137420|ref|YP_004004757.1| - 3.9e-23 82.4 0.0 1.6e-22 80.4 0.0 1.9 1 1 0 1 1 1 1 Mur ligase middle domain zf-ribbon_3 PF13248.1 gi|312137420|ref|YP_004004757.1| - 0.0017 17.5 2.4 0.44 9.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Rubredoxin PF00301.15 gi|312137420|ref|YP_004004757.1| - 0.01 15.6 1.7 0.22 11.3 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|312137420|ref|YP_004004757.1| - 0.014 15.1 0.3 0.03 14.1 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|312137420|ref|YP_004004757.1| - 0.019 14.7 2.0 0.038 13.8 1.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain SEO_C PF14577.1 gi|312137420|ref|YP_004004757.1| - 0.025 13.9 0.2 0.069 12.5 0.0 1.8 2 0 0 2 2 2 0 Sieve element occlusion C-terminus zf-ISL3 PF14690.1 gi|312137420|ref|YP_004004757.1| - 0.033 14.2 0.6 0.52 10.3 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|312137420|ref|YP_004004757.1| - 0.049 13.2 1.5 0.17 11.5 1.0 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.1 gi|312137420|ref|YP_004004757.1| - 0.16 12.3 2.7 1.2 9.6 0.1 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2296 PF10058.4 gi|312137420|ref|YP_004004757.1| - 1.5 8.5 6.5 4.7 7.0 0.1 3.2 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|312137420|ref|YP_004004757.1| - 1.6 8.0 6.3 0.29 10.4 1.4 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|312137420|ref|YP_004004757.1| - 3.2 7.3 11.2 49 3.5 7.5 2.5 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|312137420|ref|YP_004004757.1| - 3.6 7.7 9.8 8.6 6.5 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) GATase_3 PF07685.9 gi|312137421|ref|YP_004004758.1| - 2.6e-32 111.6 0.0 3.3e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|312137421|ref|YP_004004758.1| - 0.02 14.3 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|312137421|ref|YP_004004758.1| - 0.051 12.4 0.0 0.071 11.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Carb_kinase PF01256.12 gi|312137422|ref|YP_004004759.1| - 6.8e-67 225.2 0.0 9.2e-67 224.8 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|312137422|ref|YP_004004759.1| - 2.1e-49 167.3 0.0 3.5e-49 166.6 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|312137422|ref|YP_004004759.1| - 7.9e-05 21.9 0.0 0.00018 20.7 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|312137422|ref|YP_004004759.1| - 0.031 13.4 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF4257 PF14074.1 gi|312137422|ref|YP_004004759.1| - 0.039 13.5 0.2 0.1 12.2 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4257) BofA PF07441.6 gi|312137423|ref|YP_004004760.1| - 1.4e-08 34.5 23.3 2.1e-08 34.0 16.1 1.3 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Phage_holin_2 PF04550.7 gi|312137423|ref|YP_004004760.1| - 5.7 7.1 10.1 9.3 6.4 7.0 1.4 1 1 0 1 1 1 0 Phage holin family 2 Arginosuc_synth PF00764.14 gi|312137424|ref|YP_004004761.1| - 3.2e-176 586.1 2.8 3.6e-176 585.9 2.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|312137424|ref|YP_004004761.1| - 5.2e-06 26.1 0.0 8.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|312137424|ref|YP_004004761.1| - 1.4e-05 24.5 0.1 4.8e-05 22.7 0.1 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|312137424|ref|YP_004004761.1| - 0.00046 19.1 0.0 0.00073 18.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|312137424|ref|YP_004004761.1| - 0.0017 16.9 0.2 0.0029 16.2 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|312137424|ref|YP_004004761.1| - 0.003 17.0 0.1 0.011 15.2 0.0 2.1 1 1 0 1 1 1 1 PP-loop family AstE_AspA PF04952.9 gi|312137425|ref|YP_004004762.1| - 3.4e-11 42.5 0.1 5.3e-11 41.9 0.1 1.6 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|312137425|ref|YP_004004762.1| - 0.038 13.5 0.0 0.091 12.3 0.0 1.6 1 1 0 1 1 1 0 Zinc carboxypeptidase DUF457 PF04307.9 gi|312137426|ref|YP_004004763.1| - 9.6e-22 76.9 23.7 1.2e-19 70.1 16.5 2.1 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|312137426|ref|YP_004004763.1| - 0.00015 21.4 0.1 0.0014 18.2 0.1 2.1 1 1 0 1 1 1 1 Zinc dependent phospholipase C Flavi_NS4A PF01350.12 gi|312137426|ref|YP_004004763.1| - 0.00068 19.2 2.3 0.00098 18.7 1.2 1.5 1 1 0 1 1 1 1 Flavivirus non-structural protein NS4A DUF4184 PF13803.1 gi|312137426|ref|YP_004004763.1| - 0.0086 15.4 17.7 0.014 14.7 5.3 2.6 3 0 0 3 3 3 2 Domain of unknown function (DUF4184) ACT PF01842.20 gi|312137427|ref|YP_004004764.1| - 9.8e-09 34.5 0.1 5.5e-08 32.1 0.0 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|312137427|ref|YP_004004764.1| - 9.9e-09 35.4 2.1 2.7e-08 34.0 1.5 1.7 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|312137427|ref|YP_004004764.1| - 0.0003 20.4 0.0 0.001 18.7 0.0 1.9 2 0 0 2 2 2 1 ACT domain StbA PF06406.6 gi|312137427|ref|YP_004004764.1| - 0.0024 16.8 0.5 0.0042 16.0 0.4 1.4 1 0 0 1 1 1 1 StbA protein DUF1529 PF07485.6 gi|312137427|ref|YP_004004764.1| - 0.021 14.5 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1259) ACT_7 PF13840.1 gi|312137427|ref|YP_004004764.1| - 0.047 13.2 0.1 0.047 13.2 0.1 2.5 3 1 1 4 4 4 0 ACT domain Ribonuc_red_lgC PF02867.10 gi|312137428|ref|YP_004004765.1| - 5.6e-166 553.2 0.4 2.2e-66 224.5 0.0 3.6 3 1 1 4 4 4 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|312137428|ref|YP_004004765.1| - 1e-27 95.7 0.1 2.5e-27 94.4 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Intein_splicing PF14890.1 gi|312137428|ref|YP_004004765.1| - 0.00051 19.0 2.6 0.044 12.6 0.0 2.9 2 1 1 3 3 3 2 Intein splicing domain NRDD PF13597.1 gi|312137428|ref|YP_004004765.1| - 0.0051 14.9 0.1 0.0094 14.0 0.1 1.3 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase LANC_like PF05147.8 gi|312137428|ref|YP_004004765.1| - 0.041 12.4 0.0 4.7 5.6 0.0 2.3 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein LAGLIDADG_3 PF14528.1 gi|312137428|ref|YP_004004765.1| - 0.055 13.7 0.1 0.21 11.8 0.1 2.1 1 0 0 1 1 1 0 LAGLIDADG-like domain DUF2084 PF09857.4 gi|312137428|ref|YP_004004765.1| - 0.09 12.4 0.0 6.2 6.6 0.0 3.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2084) Creatininase PF02633.9 gi|312137429|ref|YP_004004766.1| - 7.3e-21 74.3 0.0 1.1e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase KH_1 PF00013.24 gi|312137429|ref|YP_004004766.1| - 0.046 13.3 0.5 0.046 13.3 0.3 2.0 2 0 0 2 2 2 0 KH domain PUA PF01472.15 gi|312137430|ref|YP_004004767.1| - 4.8e-23 80.6 1.9 4.8e-23 80.6 1.3 1.6 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.5 gi|312137430|ref|YP_004004767.1| - 6.6e-06 25.7 2.8 1.3e-05 24.8 1.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Shikimate_dh_N PF08501.6 gi|312137431|ref|YP_004004768.1| - 3.1e-31 107.2 0.0 8.1e-31 105.9 0.0 1.7 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|312137431|ref|YP_004004768.1| - 1.2e-17 64.2 0.9 2e-17 63.5 0.7 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|312137431|ref|YP_004004768.1| - 2.8e-06 27.6 0.2 5.4e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|312137431|ref|YP_004004768.1| - 5e-06 25.7 0.2 6.5e-06 25.3 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF2338 PF10100.4 gi|312137431|ref|YP_004004768.1| - 0.00043 18.7 0.1 0.0006 18.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2338) ThiF PF00899.16 gi|312137431|ref|YP_004004768.1| - 0.00046 20.0 1.6 0.065 13.0 0.2 2.6 1 1 1 2 2 2 1 ThiF family NAD_binding_7 PF13241.1 gi|312137431|ref|YP_004004768.1| - 0.0039 17.4 0.2 0.0086 16.3 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding adh_short PF00106.20 gi|312137431|ref|YP_004004768.1| - 0.013 15.4 0.2 0.022 14.6 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.11 gi|312137431|ref|YP_004004768.1| - 0.027 13.8 0.1 0.052 12.9 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|312137431|ref|YP_004004768.1| - 0.039 13.0 0.1 0.069 12.3 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CbiJ PF02571.9 gi|312137431|ref|YP_004004768.1| - 0.048 12.9 0.2 0.069 12.4 0.1 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK Malic_M PF03949.10 gi|312137431|ref|YP_004004768.1| - 0.055 13.0 1.1 0.087 12.3 0.7 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|312137431|ref|YP_004004768.1| - 0.055 13.1 0.1 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YjeF_N PF03853.10 gi|312137431|ref|YP_004004768.1| - 0.065 12.8 0.4 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus ISG65-75 PF11727.3 gi|312137431|ref|YP_004004768.1| - 0.066 12.2 0.1 0.086 11.8 0.1 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein AlaDh_PNT_C PF01262.16 gi|312137431|ref|YP_004004768.1| - 0.12 11.9 1.3 0.37 10.3 0.9 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4 PF00037.22 gi|312137432|ref|YP_004004769.1| - 1.8e-14 52.5 12.8 6e-07 28.8 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312137432|ref|YP_004004769.1| - 8.5e-08 31.7 15.9 1.3e-06 27.9 1.1 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137432|ref|YP_004004769.1| - 1.9e-07 31.3 14.4 1.9e-07 31.3 10.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137432|ref|YP_004004769.1| - 5e-06 26.2 18.1 8.3e-06 25.5 12.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137432|ref|YP_004004769.1| - 1.4e-05 25.7 16.5 0.0036 18.0 2.8 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|312137432|ref|YP_004004769.1| - 1.5e-05 24.7 15.2 2.3e-05 24.1 10.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137432|ref|YP_004004769.1| - 3.3e-05 24.0 17.4 0.016 15.4 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|312137432|ref|YP_004004769.1| - 0.00011 21.8 1.7 0.00011 21.8 1.2 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|312137432|ref|YP_004004769.1| - 0.00038 20.4 17.3 0.031 14.3 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312137432|ref|YP_004004769.1| - 0.0027 17.9 20.1 0.026 14.8 2.5 2.9 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312137432|ref|YP_004004769.1| - 0.0055 17.0 17.6 0.043 14.1 1.7 2.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|312137432|ref|YP_004004769.1| - 0.05 13.4 11.3 0.055 13.3 7.8 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312137432|ref|YP_004004769.1| - 0.18 12.2 18.4 0.27 11.7 2.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137432|ref|YP_004004769.1| - 1.4 9.6 25.5 0.33 11.6 2.4 3.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|312137432|ref|YP_004004769.1| - 1.9 9.1 13.0 2 9.0 0.6 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312137432|ref|YP_004004769.1| - 2 8.8 15.6 0.51 10.7 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_3 PF01494.14 gi|312137433|ref|YP_004004770.1| - 2.8e-18 66.1 0.9 5.8e-17 61.7 0.6 2.3 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|312137433|ref|YP_004004770.1| - 1.8e-10 40.2 1.9 8.2e-05 21.6 0.3 2.7 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|312137433|ref|YP_004004770.1| - 1.1e-09 37.7 0.0 3.5e-09 36.0 0.0 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|312137433|ref|YP_004004770.1| - 1.4e-09 37.1 0.2 4e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|312137433|ref|YP_004004770.1| - 3.4e-08 32.3 4.7 2.4e-07 29.5 0.3 2.9 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|312137433|ref|YP_004004770.1| - 2.8e-07 29.7 0.5 5.4e-07 28.8 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|312137433|ref|YP_004004770.1| - 4.1e-07 29.4 3.2 4.4e-07 29.3 1.5 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|312137433|ref|YP_004004770.1| - 1.1e-06 28.6 5.1 3.5e-06 27.0 3.6 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|312137433|ref|YP_004004770.1| - 2e-05 24.5 0.1 0.00014 21.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|312137433|ref|YP_004004770.1| - 3.1e-05 23.0 0.1 3.1e-05 23.0 0.1 2.5 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|312137433|ref|YP_004004770.1| - 0.00017 20.7 1.0 0.00039 19.5 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|312137433|ref|YP_004004770.1| - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|312137433|ref|YP_004004770.1| - 0.0049 17.0 1.3 0.023 14.9 0.9 2.3 1 1 0 1 1 1 1 Putative NAD(P)-binding SE PF08491.5 gi|312137433|ref|YP_004004770.1| - 0.017 13.9 0.1 0.028 13.2 0.0 1.3 1 0 0 1 1 1 0 Squalene epoxidase 3HCDH_N PF02737.13 gi|312137433|ref|YP_004004770.1| - 0.031 13.9 1.6 0.049 13.2 0.1 2.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|312137433|ref|YP_004004770.1| - 0.082 13.3 0.1 0.082 13.3 0.1 2.9 4 0 0 4 4 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|312137433|ref|YP_004004770.1| - 0.1 12.1 1.8 0.17 11.4 0.1 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|312137433|ref|YP_004004770.1| - 0.19 11.5 2.7 2.2 8.1 0.0 3.0 3 0 0 3 3 3 0 ThiF family DUF1492 PF07374.6 gi|312137433|ref|YP_004004770.1| - 0.45 10.6 3.5 0.62 10.2 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) IF2_N PF04760.10 gi|312137433|ref|YP_004004770.1| - 0.55 9.9 3.9 7.1 6.3 0.0 3.4 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Adenosine_kin PF04008.9 gi|312137434|ref|YP_004004771.1| - 1.5e-75 251.8 1.3 1.7e-75 251.7 0.9 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Radical_SAM PF04055.16 gi|312137435|ref|YP_004004772.1| - 1.1e-09 38.6 0.3 1.1e-09 38.6 0.2 1.7 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|312137435|ref|YP_004004772.1| - 0.00035 20.3 0.0 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain DUF3469 PF11952.3 gi|312137435|ref|YP_004004772.1| - 0.14 11.8 0.1 3.5 7.3 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3469) GatB_N PF02934.10 gi|312137436|ref|YP_004004773.1| - 1.1e-95 319.7 0.0 1.6e-95 319.2 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|312137436|ref|YP_004004773.1| - 1.6e-43 147.9 7.9 3.3e-43 146.9 5.4 1.6 1 0 0 1 1 1 1 GatB domain NOC3p PF07540.6 gi|312137436|ref|YP_004004773.1| - 0.24 11.6 2.9 0.32 11.2 0.2 2.5 3 0 0 3 3 3 0 Nucleolar complex-associated protein DUF504 PF04457.7 gi|312137437|ref|YP_004004774.1| - 4.9e-17 61.8 0.6 5.9e-17 61.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) CBS PF00571.23 gi|312137438|ref|YP_004004775.1| - 4.5e-31 106.3 8.6 8.5e-16 57.4 0.8 2.6 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|312137438|ref|YP_004004775.1| - 7.2e-14 51.6 0.2 1.8e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|312137438|ref|YP_004004775.1| - 0.00093 19.0 0.7 0.012 15.4 0.5 2.3 1 1 0 1 1 1 1 Putative ParB-like nuclease PRA-PH PF01503.12 gi|312137439|ref|YP_004004776.1| - 5.8e-12 45.7 0.1 6.6e-12 45.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|312137439|ref|YP_004004776.1| - 4.4e-05 23.3 1.6 7.4e-05 22.6 1.1 1.4 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain AIRC PF00731.15 gi|312137440|ref|YP_004004777.1| - 3.1e-28 97.9 2.2 2.4e-27 95.0 1.8 1.9 2 0 0 2 2 2 1 AIR carboxylase Ribosomal_L2_C PF03947.13 gi|312137440|ref|YP_004004777.1| - 0.11 12.2 0.4 0.2 11.4 0.1 1.5 2 0 0 2 2 2 0 Ribosomal Proteins L2, C-terminal domain Sua5_yciO_yrdC PF01300.13 gi|312137441|ref|YP_004004778.1| - 3.1e-47 160.1 0.0 5.2e-47 159.3 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|312137441|ref|YP_004004778.1| - 8.3e-34 114.7 15.0 6.3e-17 60.7 2.5 2.8 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|312137441|ref|YP_004004778.1| - 1.3e-23 82.9 0.0 3.5e-23 81.5 0.0 1.8 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|312137441|ref|YP_004004778.1| - 0.0002 20.9 0.3 0.037 13.5 0.1 2.4 2 0 0 2 2 2 2 Glycoprotease family BcrAD_BadFG PF01869.15 gi|312137441|ref|YP_004004778.1| - 0.0029 16.9 0.0 0.0059 15.9 0.0 1.5 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MRP-S33 PF08293.6 gi|312137441|ref|YP_004004778.1| - 0.05 13.5 0.1 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 Mitochondrial ribosomal subunit S27 CitX PF03802.9 gi|312137441|ref|YP_004004778.1| - 0.08 12.3 0.4 0.68 9.3 0.0 2.4 3 0 0 3 3 3 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Zn-ribbon_8 PF09723.5 gi|312137441|ref|YP_004004778.1| - 5 7.1 11.4 11 6.0 3.4 3.2 3 0 0 3 3 3 0 Zinc ribbon domain HTH_5 PF01022.15 gi|312137442|ref|YP_004004779.1| - 4.5e-13 48.6 0.1 8.1e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|312137442|ref|YP_004004779.1| - 5.8e-11 42.0 0.0 9.7e-11 41.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|312137442|ref|YP_004004779.1| - 1.4e-05 24.7 0.1 5e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family ArsR PF09824.4 gi|312137442|ref|YP_004004779.1| - 2.2e-05 23.8 0.6 2.9e-05 23.4 0.4 1.2 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_24 PF13412.1 gi|312137442|ref|YP_004004779.1| - 0.00029 20.1 0.2 0.00029 20.1 0.1 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|312137442|ref|YP_004004779.1| - 0.00035 20.2 0.0 0.00087 18.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|312137442|ref|YP_004004779.1| - 0.00049 19.6 0.1 0.0014 18.2 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|312137442|ref|YP_004004779.1| - 0.0019 18.1 0.0 0.0041 17.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain RNA_pol_Rpb4 PF03874.11 gi|312137442|ref|YP_004004779.1| - 0.0054 16.7 1.4 0.0095 15.9 0.9 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb4 HTH_27 PF13463.1 gi|312137442|ref|YP_004004779.1| - 0.0082 16.4 0.2 0.036 14.4 0.0 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|312137442|ref|YP_004004779.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|312137442|ref|YP_004004779.1| - 0.016 14.7 0.2 0.055 13.0 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_CodY PF08222.6 gi|312137442|ref|YP_004004779.1| - 0.017 14.4 0.0 0.051 12.9 0.0 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|312137442|ref|YP_004004779.1| - 0.022 14.8 0.2 0.069 13.2 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HxlR PF01638.12 gi|312137442|ref|YP_004004779.1| - 0.039 13.5 0.5 0.062 12.9 0.1 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix IF2_N PF04760.10 gi|312137442|ref|YP_004004779.1| - 0.041 13.5 0.2 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region CAP59_mtransfer PF11735.3 gi|312137442|ref|YP_004004779.1| - 0.043 13.0 0.4 0.052 12.7 0.2 1.3 1 1 0 1 1 1 0 Cryptococcal mannosyltransferase 1 DUF2513 PF10711.4 gi|312137442|ref|YP_004004779.1| - 0.072 13.1 0.4 0.19 11.8 0.0 1.9 2 1 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_29 PF13551.1 gi|312137442|ref|YP_004004779.1| - 0.09 12.9 0.1 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix MarR PF01047.17 gi|312137442|ref|YP_004004779.1| - 0.09 12.4 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family AT_hook PF02178.14 gi|312137442|ref|YP_004004779.1| - 0.14 11.8 0.9 0.37 10.5 0.6 1.7 1 0 0 1 1 1 0 AT hook motif Fn3_assoc PF13287.1 gi|312137443|ref|YP_004004780.1| - 9.3e-20 70.4 12.3 7e-12 45.2 1.5 2.4 2 0 0 2 2 2 2 Fn3 associated CHB_HEX_C PF03174.8 gi|312137443|ref|YP_004004780.1| - 1.7e-19 69.4 7.5 1.2e-11 44.2 0.8 2.2 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain CHB_HEX_C_1 PF13290.1 gi|312137443|ref|YP_004004780.1| - 2.6e-19 68.7 8.5 4.2e-12 45.6 1.0 2.3 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain Ldh_2 PF02615.9 gi|312137443|ref|YP_004004780.1| - 0.028 13.1 0.2 0.039 12.6 0.1 1.2 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase Glycos_transf_2 PF00535.21 gi|312137444|ref|YP_004004781.1| - 1.3e-28 99.7 0.1 2.2e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|312137444|ref|YP_004004781.1| - 6.4e-10 39.2 0.0 1.1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|312137444|ref|YP_004004781.1| - 7.8e-09 35.0 0.2 1.2e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CDC48_N PF02359.13 gi|312137444|ref|YP_004004781.1| - 0.00038 20.3 1.2 0.00075 19.3 0.1 2.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Glyco_tranf_2_4 PF13704.1 gi|312137444|ref|YP_004004781.1| - 0.003 17.8 0.0 0.0063 16.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 CofC PF01983.11 gi|312137444|ref|YP_004004781.1| - 0.0037 16.2 0.2 0.0076 15.2 0.1 1.5 1 0 0 1 1 1 1 Guanylyl transferase CofC like Antitoxin-MazE PF04014.13 gi|312137444|ref|YP_004004781.1| - 0.029 14.1 0.8 13 5.6 0.0 3.7 4 0 0 4 4 4 0 Antidote-toxin recognition MazE SPOUT_MTase_2 PF14419.1 gi|312137445|ref|YP_004004782.1| - 7e-82 272.8 0.0 1.1e-81 272.1 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|312137445|ref|YP_004004782.1| - 2.4e-29 102.0 3.5 4.4e-29 101.2 1.7 2.0 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_4 PF09936.4 gi|312137445|ref|YP_004004782.1| - 0.016 14.7 0.0 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase DUF531 PF04407.7 gi|312137445|ref|YP_004004782.1| - 0.027 14.3 0.0 0.069 13.0 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF531) Trm56 PF01994.11 gi|312137445|ref|YP_004004782.1| - 0.063 13.0 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|312137445|ref|YP_004004782.1| - 0.1 12.5 0.0 15 5.4 0.0 2.6 3 0 0 3 3 3 0 SpoU rRNA Methylase family DJ-1_PfpI PF01965.19 gi|312137446|ref|YP_004004783.1| - 9.7e-24 83.4 0.4 1.7e-23 82.6 0.3 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|312137446|ref|YP_004004783.1| - 1.8e-13 50.0 0.0 3.4e-13 49.1 0.0 1.5 1 1 0 1 1 1 1 Putative amidotransferase GATase_5 PF13507.1 gi|312137446|ref|YP_004004783.1| - 0.0042 16.0 0.0 0.0078 15.1 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain 2-ph_phosp PF04029.9 gi|312137447|ref|YP_004004784.1| - 1.1e-62 211.0 2.1 1.2e-62 210.9 1.4 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase TK PF00265.13 gi|312137447|ref|YP_004004784.1| - 0.037 13.5 0.2 0.1 12.1 0.1 1.7 1 1 1 2 2 2 0 Thymidine kinase Spt20 PF12090.3 gi|312137447|ref|YP_004004784.1| - 0.045 13.0 0.1 0.078 12.3 0.0 1.5 2 0 0 2 2 2 0 Spt20 family DUF1383 PF07134.6 gi|312137448|ref|YP_004004785.1| - 0.0047 15.8 0.7 0.0061 15.5 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1383) Rota_NSP4 PF01452.11 gi|312137448|ref|YP_004004785.1| - 0.04 13.2 2.7 0.054 12.8 1.6 1.5 1 1 0 1 1 1 0 Rotavirus non structural protein Cyc-maltodext_C PF10438.4 gi|312137448|ref|YP_004004785.1| - 0.059 13.4 1.3 0.072 13.1 0.2 1.7 2 0 0 2 2 2 0 Cyclo-malto-dextrinase C-terminal domain PCNA_N PF00705.13 gi|312137448|ref|YP_004004785.1| - 0.078 12.4 2.1 0.079 12.4 0.4 1.7 2 0 0 2 2 2 0 Proliferating cell nuclear antigen, N-terminal domain p25-alpha PF05517.7 gi|312137448|ref|YP_004004785.1| - 3.9 7.7 7.3 1.4 9.1 1.2 2.3 1 1 1 2 2 2 0 p25-alpha MCR_C PF04609.7 gi|312137449|ref|YP_004004786.1| - 2.7e-114 380.4 1.6 3.1e-114 380.2 1.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C TraB PF01963.12 gi|312137450|ref|YP_004004787.1| - 4.6e-45 154.0 0.0 5.1e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 TraB family Hydrolase PF00702.21 gi|312137450|ref|YP_004004787.1| - 1.8 8.9 4.7 2.8 8.2 3.3 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF1922 PF09082.5 gi|312137451|ref|YP_004004788.1| - 2.9e-31 107.3 1.9 3.5e-31 107.0 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) GTP_EFTU PF00009.22 gi|312137452|ref|YP_004004789.1| - 1.2e-30 106.3 0.1 2.1e-30 105.5 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|312137452|ref|YP_004004789.1| - 7.7e-17 61.2 0.2 2.5e-16 59.6 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|312137452|ref|YP_004004789.1| - 1.6e-11 44.1 1.0 1.6e-11 44.1 0.7 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|312137452|ref|YP_004004789.1| - 0.0028 17.6 0.1 0.0071 16.2 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|312137452|ref|YP_004004789.1| - 0.0094 15.5 0.1 0.088 12.3 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU_D4 PF14578.1 gi|312137452|ref|YP_004004789.1| - 0.011 15.4 2.7 0.04 13.5 0.8 2.7 2 0 0 2 2 2 0 Elongation factor Tu domain 4 AAA_4 PF04326.9 gi|312137452|ref|YP_004004789.1| - 0.02 15.0 0.4 0.27 11.3 0.1 2.6 2 0 0 2 2 2 0 Divergent AAA domain ATP_bind_3 PF01171.15 gi|312137453|ref|YP_004004790.1| - 5.2e-16 58.6 0.0 1.2e-15 57.4 0.0 1.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|312137453|ref|YP_004004790.1| - 1.1e-05 24.1 0.0 2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|312137453|ref|YP_004004790.1| - 0.0001 21.7 0.5 0.00053 19.4 0.0 2.1 2 0 0 2 2 2 1 ATP-binding region PAPS_reduct PF01507.14 gi|312137453|ref|YP_004004790.1| - 0.0014 18.4 2.4 0.0037 17.0 0.2 2.5 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|312137453|ref|YP_004004790.1| - 0.0022 17.3 0.5 0.0053 16.1 0.4 1.7 1 0 0 1 1 1 1 RecR protein Peptidase_C14 PF00656.17 gi|312137453|ref|YP_004004790.1| - 0.0034 17.1 0.3 0.032 13.9 0.0 2.4 3 0 0 3 3 3 1 Caspase domain DrsE PF02635.10 gi|312137453|ref|YP_004004790.1| - 0.0035 17.3 0.3 0.66 10.0 0.0 2.5 2 0 0 2 2 2 1 DsrE/DsrF-like family FerA PF08165.6 gi|312137453|ref|YP_004004790.1| - 0.1 12.2 0.2 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 FerA (NUC095) domain DUF208 PF02677.9 gi|312137453|ref|YP_004004790.1| - 0.4 10.4 5.1 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized BCR, COG1636 DUF77 PF01910.12 gi|312137454|ref|YP_004004791.1| - 5.6e-32 109.2 3.0 6.3e-32 109.1 2.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Peptidase_S46 PF10459.4 gi|312137454|ref|YP_004004791.1| - 0.044 12.2 1.0 0.048 12.0 0.7 1.0 1 0 0 1 1 1 0 Peptidase S46 DUF2313 PF10076.4 gi|312137454|ref|YP_004004791.1| - 0.056 12.8 0.8 6.9 6.0 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) V-ATPase_G PF03179.10 gi|312137455|ref|YP_004004792.1| - 1.2e-06 28.7 18.0 1.3e-06 28.6 12.5 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|312137455|ref|YP_004004792.1| - 0.00076 19.2 22.0 0.011 15.5 8.9 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|312137455|ref|YP_004004792.1| - 0.0013 17.9 12.4 0.0013 17.9 8.6 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) DUF883 PF05957.8 gi|312137455|ref|YP_004004792.1| - 0.0022 18.3 7.8 0.17 12.3 0.9 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) Laminin_I PF06008.9 gi|312137455|ref|YP_004004792.1| - 0.011 15.1 10.0 0.14 11.4 1.1 2.0 2 0 0 2 2 2 0 Laminin Domain I DivIVA PF05103.8 gi|312137455|ref|YP_004004792.1| - 0.031 14.3 16.9 1.8 8.6 10.4 2.0 1 1 1 2 2 2 0 DivIVA protein HrpE PF06188.7 gi|312137455|ref|YP_004004792.1| - 0.094 12.4 6.8 0.81 9.4 4.7 1.9 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E HAUS-augmin3 PF14932.1 gi|312137455|ref|YP_004004792.1| - 0.24 10.5 7.9 0.34 10.0 5.5 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4168 PF13767.1 gi|312137455|ref|YP_004004792.1| - 0.8 10.3 9.8 1.1 9.9 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4168) Histidinol_dh PF00815.15 gi|312137455|ref|YP_004004792.1| - 1.1 7.8 5.7 1.3 7.6 3.9 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase FIVAR PF07554.8 gi|312137455|ref|YP_004004792.1| - 1.2 9.4 10.0 0.29 11.4 0.9 2.6 2 1 0 2 2 2 0 Uncharacterised Sugar-binding Domain Activator-TraM PF11657.3 gi|312137455|ref|YP_004004792.1| - 1.3 8.5 10.4 2.7 7.4 7.0 1.6 1 1 0 1 1 1 0 Transcriptional activator TraM Mitofilin PF09731.4 gi|312137455|ref|YP_004004792.1| - 1.6 7.3 15.7 1.8 7.0 10.9 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein hDGE_amylase PF14701.1 gi|312137455|ref|YP_004004792.1| - 4.8 5.9 6.9 4.9 5.9 4.8 1.0 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme SUV3_C PF12513.3 gi|312137455|ref|YP_004004792.1| - 8.6 5.9 10.7 10 5.6 0.4 3.2 2 2 1 3 3 3 0 Mitochondrial degradasome RNA helicase subunit C terminal YtxH PF12732.2 gi|312137455|ref|YP_004004792.1| - 9.9 6.6 12.9 8.3e+02 0.4 8.9 2.1 1 1 0 1 1 1 0 YtxH-like protein V_ATPase_I PF01496.14 gi|312137456|ref|YP_004004793.1| - 4.7e-105 352.1 23.4 1.2e-79 268.0 5.8 2.2 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family COG2 PF06148.6 gi|312137456|ref|YP_004004793.1| - 0.0015 18.4 8.9 0.014 15.2 1.9 2.8 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 Rootletin PF15035.1 gi|312137456|ref|YP_004004793.1| - 0.25 11.2 7.2 0.12 12.3 1.7 2.0 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Laminin_II PF06009.7 gi|312137456|ref|YP_004004793.1| - 1.4 8.7 9.4 5.2 6.8 0.1 3.3 2 1 1 3 3 3 0 Laminin Domain II DUF1664 PF07889.7 gi|312137456|ref|YP_004004793.1| - 1.7 8.4 5.5 6.1 6.6 0.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spectrin PF00435.16 gi|312137456|ref|YP_004004793.1| - 1.9 8.7 7.8 2.7 8.2 0.0 2.6 3 0 0 3 3 3 0 Spectrin repeat ATP-synt_C PF00137.16 gi|312137457|ref|YP_004004794.1| - 7.8e-21 73.7 11.5 9.9e-21 73.4 8.0 1.2 1 0 0 1 1 1 1 ATP synthase subunit C FtsX PF02687.16 gi|312137457|ref|YP_004004794.1| - 0.54 10.0 7.2 0.66 9.7 5.0 1.1 1 0 0 1 1 1 0 FtsX-like permease family vATP-synt_E PF01991.13 gi|312137458|ref|YP_004004795.1| - 7.3e-45 152.6 23.9 8.2e-45 152.5 16.6 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit FliH PF02108.11 gi|312137458|ref|YP_004004795.1| - 1.2e-06 28.4 1.3 1.2e-06 28.4 0.9 1.9 2 1 0 2 2 2 1 Flagellar assembly protein FliH HrpE PF06188.7 gi|312137458|ref|YP_004004795.1| - 0.0018 18.0 6.7 0.011 15.5 0.5 2.1 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.8 gi|312137458|ref|YP_004004795.1| - 0.01 15.8 6.4 0.01 15.8 4.4 2.8 2 1 1 3 3 3 0 DivIVA protein OSCP PF00213.13 gi|312137458|ref|YP_004004795.1| - 0.023 14.5 16.6 0.058 13.2 9.2 2.0 1 1 1 2 2 2 0 ATP synthase delta (OSCP) subunit ATP-synt_B PF00430.13 gi|312137458|ref|YP_004004795.1| - 0.056 13.2 22.4 0.54 10.0 7.4 3.1 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|312137458|ref|YP_004004795.1| - 0.29 10.3 25.0 1.3 8.2 17.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Senescence PF06911.7 gi|312137458|ref|YP_004004795.1| - 0.62 9.7 4.9 0.72 9.5 2.2 2.0 2 1 0 2 2 2 0 Senescence-associated protein DNA_pol_viral_N PF00242.12 gi|312137458|ref|YP_004004795.1| - 0.69 8.8 4.2 0.96 8.4 2.9 1.2 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain DFF40 PF09230.5 gi|312137458|ref|YP_004004795.1| - 1.6 8.0 7.1 2.8 7.2 4.9 1.4 1 0 0 1 1 1 0 DNA fragmentation factor 40 kDa MT0933_antitox PF14013.1 gi|312137458|ref|YP_004004795.1| - 3.9 7.6 11.0 0.67 10.1 0.1 3.3 3 0 0 3 3 3 0 MT0933-like antitoxin protein V-ATPase_G PF03179.10 gi|312137458|ref|YP_004004795.1| - 4.6 7.6 27.4 1.5 9.1 15.2 2.7 2 2 1 3 3 3 0 Vacuolar (H+)-ATPase G subunit vATP-synt_AC39 PF01992.11 gi|312137459|ref|YP_004004796.1| - 1.4e-85 287.4 14.3 1.6e-85 287.2 9.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MutS_III PF05192.13 gi|312137459|ref|YP_004004796.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.4 1 1 0 1 1 1 0 MutS domain III HTH_40 PF14493.1 gi|312137459|ref|YP_004004796.1| - 0.071 13.3 3.1 16 5.7 0.1 3.7 3 1 0 3 3 3 0 Helix-turn-helix domain ATP-synt_F PF01990.12 gi|312137460|ref|YP_004004797.1| - 1.5e-24 86.1 3.0 1.7e-24 86.0 2.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF190 PF02641.10 gi|312137460|ref|YP_004004797.1| - 0.24 11.2 2.9 0.21 11.4 0.3 1.9 1 1 1 2 2 2 0 Uncharacterized ACR, COG1993 ATP-synt_ab PF00006.20 gi|312137461|ref|YP_004004798.1| - 3.9e-91 304.3 0.0 6.7e-83 277.4 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|312137461|ref|YP_004004798.1| - 3.1e-22 79.1 5.3 3.3e-22 79.1 1.4 2.9 2 0 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|312137461|ref|YP_004004798.1| - 1.9e-16 60.0 3.1 7.8e-16 58.0 2.2 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Hint PF01079.15 gi|312137461|ref|YP_004004798.1| - 0.00022 20.4 0.0 0.00066 18.9 0.0 1.7 2 0 0 2 2 2 1 Hint module RnfC_N PF13375.1 gi|312137461|ref|YP_004004798.1| - 0.0035 17.0 0.3 0.025 14.2 0.1 2.5 3 0 0 3 3 3 1 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.20 gi|312137462|ref|YP_004004799.1| - 2.4e-63 213.4 0.0 3.2e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|312137462|ref|YP_004004799.1| - 1.6e-16 60.7 0.1 2.9e-16 59.9 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|312137462|ref|YP_004004799.1| - 3.9e-11 42.9 2.4 7.6e-11 42.0 1.7 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|312137462|ref|YP_004004799.1| - 8.9e-07 28.7 1.2 2.4e-06 27.3 0.8 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|312137463|ref|YP_004004800.1| - 1.1e-69 233.9 12.6 1.2e-69 233.7 8.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Muted PF14942.1 gi|312137463|ref|YP_004004800.1| - 0.022 14.6 3.8 0.042 13.7 0.3 2.4 2 1 1 3 3 3 0 Organelle biogenesis, Muted-like protein BMFP PF04380.8 gi|312137463|ref|YP_004004800.1| - 0.033 14.3 1.3 5.1 7.2 0.0 3.3 3 1 0 3 3 3 0 Membrane fusogenic activity FliT PF05400.8 gi|312137463|ref|YP_004004800.1| - 0.035 14.4 0.4 0.15 12.4 0.0 2.2 2 1 0 2 2 2 0 Flagellar protein FliT DUF2730 PF10805.3 gi|312137463|ref|YP_004004800.1| - 0.22 11.2 3.1 0.51 10.0 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) DUF22 PF01629.11 gi|312137464|ref|YP_004004801.1| - 9.5e-24 83.0 0.5 1.1e-23 82.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 tRNA-synt_2d PF01409.15 gi|312137465|ref|YP_004004802.1| - 3.7e-95 317.8 0.0 6.2e-95 317.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|312137465|ref|YP_004004802.1| - 3e-06 26.9 0.7 2.9e-05 23.7 0.5 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF2582 PF10771.4 gi|312137465|ref|YP_004004802.1| - 5.8e-06 26.0 0.7 0.00082 19.1 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2582) tRNA-synt_2 PF00152.15 gi|312137465|ref|YP_004004802.1| - 2.4e-05 23.2 5.5 0.0059 15.4 0.0 3.5 4 0 0 4 4 4 2 tRNA synthetases class II (D, K and N) TrmB PF01978.14 gi|312137465|ref|YP_004004802.1| - 0.036 13.7 0.3 10 5.8 0.1 2.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|312137465|ref|YP_004004802.1| - 0.038 14.0 0.8 2.6 8.2 0.1 3.5 3 1 0 3 3 3 0 Mrr N-terminal domain AAA_assoc_C PF09821.4 gi|312137465|ref|YP_004004802.1| - 0.16 12.2 2.1 8.4 6.6 0.1 2.9 2 1 1 3 3 3 0 C-terminal AAA-associated domain HTH_45 PF14947.1 gi|312137465|ref|YP_004004802.1| - 0.24 11.2 10.7 0.61 9.9 1.1 3.6 2 1 0 3 3 3 0 Winged helix-turn-helix CitG PF01874.11 gi|312137466|ref|YP_004004803.1| - 7e-79 264.8 0.0 8.1e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF2100 PF09873.4 gi|312137466|ref|YP_004004803.1| - 0.07 12.5 0.3 9.2 5.6 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2100) ALAD PF00490.16 gi|312137467|ref|YP_004004804.1| - 2.9e-148 493.0 0.4 3.2e-148 492.9 0.3 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NosD PF05048.8 gi|312137468|ref|YP_004004805.1| - 1.7e-38 132.1 46.5 5.3e-37 127.2 17.2 3.4 2 2 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|312137468|ref|YP_004004805.1| - 1.7e-16 60.3 55.6 1e-13 51.3 19.1 3.9 2 2 1 3 3 3 2 Right handed beta helix region Transglut_C PF00927.17 gi|312137468|ref|YP_004004805.1| - 0.029 14.4 1.2 0.12 12.3 0.3 2.5 2 1 1 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF4354 PF14263.1 gi|312137468|ref|YP_004004805.1| - 0.15 11.7 1.4 0.29 10.8 0.2 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4354) Big_3 PF07523.7 gi|312137468|ref|YP_004004805.1| - 4.4 7.4 10.6 6.5 6.9 1.3 4.4 3 1 1 4 4 4 0 Bacterial Ig-like domain (group 3) Big_2 PF02368.13 gi|312137468|ref|YP_004004805.1| - 8.4 6.3 11.0 0.92 9.4 3.3 2.7 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 2) CobN-Mg_chel PF02514.11 gi|312137469|ref|YP_004004806.1| - 9.5e-238 791.5 0.0 1.3e-237 791.0 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF4480 PF13715.1 gi|312137469|ref|YP_004004806.1| - 2.9e-05 24.0 0.3 7.2e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|312137469|ref|YP_004004806.1| - 0.00013 21.9 0.7 0.0003 20.7 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF1517 PF07466.6 gi|312137469|ref|YP_004004806.1| - 4.6 6.1 6.2 8 5.3 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) Fer4 PF00037.22 gi|312137470|ref|YP_004004807.1| - 2.4e-15 55.3 22.3 9.8e-10 37.6 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|312137470|ref|YP_004004807.1| - 8.4e-13 47.5 21.0 3.3e-08 33.0 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.5 gi|312137470|ref|YP_004004807.1| - 2e-11 43.3 0.0 2.5e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_2 PF12797.2 gi|312137470|ref|YP_004004807.1| - 2.4e-11 42.8 20.2 1.1e-05 24.9 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|312137470|ref|YP_004004807.1| - 3.4e-11 43.3 15.6 5.3e-11 42.7 10.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|312137470|ref|YP_004004807.1| - 8.8e-11 41.9 10.5 5.5e-07 29.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|312137470|ref|YP_004004807.1| - 9.2e-10 38.2 14.1 1.6e-09 37.4 9.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|312137470|ref|YP_004004807.1| - 3.5e-09 36.3 31.7 8e-08 31.9 12.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|312137470|ref|YP_004004807.1| - 1.5e-08 34.5 23.7 8.4e-06 25.7 10.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|312137470|ref|YP_004004807.1| - 1.6e-08 34.2 19.0 6.8e-05 22.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|312137470|ref|YP_004004807.1| - 6.2e-07 29.6 8.6 0.0019 18.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|312137470|ref|YP_004004807.1| - 3.6e-06 27.3 18.2 4.9e-05 23.6 1.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|312137470|ref|YP_004004807.1| - 1.4e-05 25.7 15.9 0.012 16.3 11.2 2.4 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|312137470|ref|YP_004004807.1| - 2.2e-05 24.9 14.0 0.028 14.9 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|312137470|ref|YP_004004807.1| - 3.2e-05 24.2 15.8 0.00045 20.5 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|312137470|ref|YP_004004807.1| - 0.00015 21.5 8.7 0.00024 20.9 6.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|312137470|ref|YP_004004807.1| - 0.00017 21.8 26.1 0.004 17.6 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.5 gi|312137470|ref|YP_004004807.1| - 7.5 6.7 8.9 10 6.3 0.5 2.6 1 1 1 3 3 3 0 c-SKI Smad4 binding domain DUF39 PF01837.11 gi|312137471|ref|YP_004004808.1| - 3.6e-152 505.9 0.2 4.8e-152 505.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|312137471|ref|YP_004004808.1| - 1.2e-31 108.2 2.3 7.7e-17 60.8 0.3 2.6 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|312137471|ref|YP_004004808.1| - 0.022 14.8 1.1 0.68 10.0 0.1 3.2 2 1 1 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF211 PF02680.9 gi|312137471|ref|YP_004004808.1| - 0.16 11.8 3.2 0.36 10.6 0.4 2.6 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 TrkA_N PF02254.13 gi|312137472|ref|YP_004004809.1| - 1.7e-37 127.9 0.5 4.6e-37 126.5 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|312137472|ref|YP_004004809.1| - 9.5e-14 50.7 0.2 5.5e-13 48.3 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|312137472|ref|YP_004004809.1| - 7.6e-08 32.5 0.2 2.3e-07 31.0 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|312137472|ref|YP_004004809.1| - 1.3e-06 28.4 0.6 1.6e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|312137472|ref|YP_004004809.1| - 1.7e-06 28.3 0.5 1e-05 25.8 0.0 2.3 2 2 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|312137472|ref|YP_004004809.1| - 4.2e-06 25.9 0.1 5.6e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|312137472|ref|YP_004004809.1| - 5.1e-06 25.9 0.7 2.9e-05 23.5 0.1 2.5 1 1 2 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|312137472|ref|YP_004004809.1| - 5.7e-06 26.1 0.0 1.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|312137472|ref|YP_004004809.1| - 1.1e-05 24.9 0.2 4.2e-05 23.0 0.0 2.0 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|312137472|ref|YP_004004809.1| - 1.6e-05 25.0 0.0 2.4e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|312137472|ref|YP_004004809.1| - 1.8e-05 25.0 0.1 4.9e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|312137472|ref|YP_004004809.1| - 0.00012 21.2 0.0 0.00039 19.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|312137472|ref|YP_004004809.1| - 0.00012 21.6 0.0 0.00039 20.0 0.0 1.8 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|312137472|ref|YP_004004809.1| - 0.00014 21.1 0.1 0.00057 19.1 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.13 gi|312137472|ref|YP_004004809.1| - 0.00023 20.8 0.0 0.00048 19.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|312137472|ref|YP_004004809.1| - 0.00054 19.5 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DAO PF01266.19 gi|312137472|ref|YP_004004809.1| - 0.00087 18.2 0.0 0.0013 17.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|312137472|ref|YP_004004809.1| - 0.0019 18.0 0.1 0.0072 16.1 0.0 1.9 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|312137472|ref|YP_004004809.1| - 0.0031 17.8 0.0 0.0048 17.2 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|312137472|ref|YP_004004809.1| - 0.0095 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|312137472|ref|YP_004004809.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.4 gi|312137472|ref|YP_004004809.1| - 0.03 14.0 0.5 0.11 12.2 0.0 2.2 2 1 1 3 3 3 0 Rossmann-like domain THF_DHG_CYH_C PF02882.14 gi|312137472|ref|YP_004004809.1| - 0.056 12.5 0.6 1.3 8.1 0.1 2.7 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|312137472|ref|YP_004004809.1| - 0.072 12.2 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|312137472|ref|YP_004004809.1| - 0.089 11.3 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.9 gi|312137472|ref|YP_004004809.1| - 0.12 10.8 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.16 gi|312137472|ref|YP_004004809.1| - 0.42 10.4 1.9 1.8 8.3 0.3 2.5 2 1 1 3 3 3 0 ThiF family PmbA_TldD PF01523.11 gi|312137473|ref|YP_004004810.1| - 9.8e-66 221.9 1.1 1.5e-65 221.3 0.8 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AMMECR1 PF01871.12 gi|312137474|ref|YP_004004811.1| - 3.4e-66 221.5 0.0 3.9e-66 221.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NOG1 PF06858.9 gi|312137475|ref|YP_004004812.1| - 9.2e-23 79.8 0.3 3.8e-22 77.9 0.1 2.2 2 1 1 3 3 2 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|312137475|ref|YP_004004812.1| - 2.6e-20 72.5 0.0 5.6e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|312137475|ref|YP_004004812.1| - 7.2e-14 51.3 0.1 1.2e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|312137475|ref|YP_004004812.1| - 6.4e-07 29.8 0.0 1.4e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|312137475|ref|YP_004004812.1| - 1.9e-05 24.1 0.1 8.1e-05 22.1 0.0 2.1 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|312137475|ref|YP_004004812.1| - 0.00017 21.0 0.0 0.06 12.7 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|312137475|ref|YP_004004812.1| - 0.0037 16.0 0.0 0.56 8.9 0.0 2.3 2 0 0 2 2 2 1 ArgK protein AAA_18 PF13238.1 gi|312137475|ref|YP_004004812.1| - 0.0055 17.0 3.3 0.023 14.9 0.7 2.9 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|312137475|ref|YP_004004812.1| - 0.006 15.7 0.1 0.078 12.1 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|312137475|ref|YP_004004812.1| - 0.0083 15.9 0.6 3 7.6 0.0 2.8 2 1 1 3 3 3 1 Dynamin family cobW PF02492.14 gi|312137475|ref|YP_004004812.1| - 0.012 15.0 0.1 5.3 6.4 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|312137475|ref|YP_004004812.1| - 0.024 15.4 0.4 0.089 13.6 0.0 2.3 2 2 0 2 2 2 0 AAA domain AIG1 PF04548.11 gi|312137475|ref|YP_004004812.1| - 0.039 13.0 0.0 0.059 12.4 0.0 1.3 1 0 0 1 1 1 0 AIG1 family MobB PF03205.9 gi|312137475|ref|YP_004004812.1| - 0.062 13.0 0.1 0.17 11.6 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Syntaxin-6_N PF09177.6 gi|312137475|ref|YP_004004812.1| - 0.066 13.6 0.4 0.4 11.1 0.0 2.4 2 2 0 2 2 2 0 Syntaxin 6, N-terminal Arf PF00025.16 gi|312137475|ref|YP_004004812.1| - 0.069 12.3 0.6 1.7 7.8 0.4 2.7 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_22 PF13401.1 gi|312137475|ref|YP_004004812.1| - 0.1 12.7 0.0 0.48 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.12 gi|312137475|ref|YP_004004812.1| - 0.12 11.8 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein IMCp PF12314.3 gi|312137475|ref|YP_004004812.1| - 0.17 12.0 2.8 0.18 11.9 0.6 2.0 2 0 0 2 2 1 0 Inner membrane complex protein zf-C4H2 PF10146.4 gi|312137475|ref|YP_004004812.1| - 0.21 11.5 0.8 0.64 9.9 0.1 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein AAA_23 PF13476.1 gi|312137475|ref|YP_004004812.1| - 0.3 11.4 8.9 5.3 7.3 0.0 3.1 2 1 1 3 3 3 0 AAA domain HSP20 PF00011.16 gi|312137476|ref|YP_004004813.1| - 2e-20 72.5 6.2 2e-20 72.5 4.3 1.4 2 0 0 2 2 2 1 Hsp20/alpha crystallin family CS PF04969.11 gi|312137476|ref|YP_004004813.1| - 1.5e-05 25.4 1.3 1.5e-05 25.4 0.9 2.0 1 1 1 2 2 2 1 CS domain PIH1 PF08190.7 gi|312137476|ref|YP_004004813.1| - 0.003 17.0 0.2 0.0036 16.8 0.1 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 GvpH PF05455.6 gi|312137476|ref|YP_004004813.1| - 0.012 15.2 0.2 0.017 14.7 0.1 1.3 1 0 0 1 1 1 0 GvpH DUF4097 PF13349.1 gi|312137476|ref|YP_004004813.1| - 0.021 14.4 0.9 0.033 13.7 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) DUF447 PF04289.7 gi|312137477|ref|YP_004004814.1| - 1e-41 142.4 1.3 1.2e-41 142.2 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_oxidase PF01243.15 gi|312137477|ref|YP_004004814.1| - 0.0059 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2124 PF09897.4 gi|312137478|ref|YP_004004815.1| - 1.2e-49 167.8 0.2 1.4e-49 167.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Aldolase_2 PF10120.4 gi|312137479|ref|YP_004004816.1| - 5.7e-62 208.0 0.1 6.6e-62 207.8 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase SIS PF01380.17 gi|312137480|ref|YP_004004817.1| - 2.6e-27 94.9 0.2 5.7e-19 68.0 0.1 2.1 2 0 0 2 2 2 2 SIS domain bact-PGI_C PF10432.4 gi|312137480|ref|YP_004004817.1| - 0.0017 18.0 0.0 0.0056 16.3 0.0 1.9 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS_2 PF13580.1 gi|312137480|ref|YP_004004817.1| - 0.0071 16.0 0.3 0.85 9.3 0.1 3.2 2 1 1 3 3 3 1 SIS domain Takusan PF04822.8 gi|312137480|ref|YP_004004817.1| - 0.017 14.8 2.0 0.047 13.4 1.4 1.7 1 0 0 1 1 1 0 Takusan DGC PF08859.6 gi|312137480|ref|YP_004004817.1| - 0.028 14.2 0.0 0.071 12.9 0.0 1.7 1 0 0 1 1 1 0 DGC domain COX1 PF00115.15 gi|312137481|ref|YP_004004818.1| - 0.0058 15.2 0.9 0.0068 15.0 0.7 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF3816 PF12822.2 gi|312137481|ref|YP_004004818.1| - 0.0085 15.9 0.9 0.0085 15.9 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) FtsX PF02687.16 gi|312137481|ref|YP_004004818.1| - 0.019 14.6 0.7 0.024 14.3 0.5 1.1 1 0 0 1 1 1 0 FtsX-like permease family DUF2104 PF09877.4 gi|312137481|ref|YP_004004818.1| - 0.034 14.0 0.4 0.041 13.8 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2104) DUF1049 PF06305.6 gi|312137481|ref|YP_004004818.1| - 1.4 8.4 3.3 1.8 8.1 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) EpuA PF11772.3 gi|312137481|ref|YP_004004818.1| - 2.7 7.5 7.9 4.2 6.8 5.5 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta ArgJ PF01960.13 gi|312137482|ref|YP_004004819.1| - 1.5e-141 471.3 11.3 1.8e-141 471.0 7.8 1.0 1 0 0 1 1 1 1 ArgJ family AA_kinase PF00696.23 gi|312137483|ref|YP_004004820.1| - 5.3e-43 147.3 2.3 6.1e-43 147.0 1.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Iso_dh PF00180.15 gi|312137484|ref|YP_004004821.1| - 2.8e-108 361.9 0.1 3.4e-108 361.6 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Dicty_CAD PF05720.7 gi|312137484|ref|YP_004004821.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Cell-cell adhesion domain Nit_Regul_Hom PF10126.4 gi|312137485|ref|YP_004004822.1| - 4.8e-42 142.1 1.9 5.3e-42 142.0 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII MOR2-PAG1_mid PF14228.1 gi|312137485|ref|YP_004004822.1| - 0.07 10.7 0.1 0.078 10.5 0.1 1.0 1 0 0 1 1 1 0 Cell morphogenesis central region NTP_transferase PF00483.18 gi|312137486|ref|YP_004004823.1| - 6.3e-28 97.7 0.1 1.3e-27 96.6 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|312137486|ref|YP_004004823.1| - 3.8e-11 43.3 0.0 8e-11 42.2 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|312137486|ref|YP_004004823.1| - 0.00098 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Smr PF01713.16 gi|312137486|ref|YP_004004823.1| - 0.0026 17.9 0.0 0.007 16.5 0.0 1.8 1 0 0 1 1 1 1 Smr domain IspD PF01128.14 gi|312137486|ref|YP_004004823.1| - 0.0089 15.5 0.0 0.022 14.2 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3189 PF11385.3 gi|312137486|ref|YP_004004823.1| - 0.018 14.5 0.2 0.03 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3189) Ribosomal_L12 PF00542.14 gi|312137487|ref|YP_004004824.1| - 0.18 11.8 2.9 0.53 10.3 0.2 2.5 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain RNase_Zc3h12a PF11977.3 gi|312137488|ref|YP_004004825.1| - 1.2e-20 73.9 0.9 2.8e-20 72.7 0.6 1.6 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain Peptidase_C3 PF00548.15 gi|312137488|ref|YP_004004825.1| - 0.34 10.7 1.8 0.37 10.5 0.2 1.8 2 0 0 2 2 2 0 3C cysteine protease (picornain 3C) Metallophos_2 PF12850.2 gi|312137489|ref|YP_004004826.1| - 1.9e-22 79.8 0.0 2.4e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|312137489|ref|YP_004004826.1| - 1.4e-20 73.5 0.2 1.8e-20 73.2 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|312137489|ref|YP_004004826.1| - 0.0013 17.9 1.0 0.23 10.5 0.7 2.8 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily MutL PF13941.1 gi|312137489|ref|YP_004004826.1| - 0.0039 15.5 0.1 0.0097 14.2 0.0 1.6 2 0 0 2 2 2 1 MutL protein PGA_cap PF09587.5 gi|312137489|ref|YP_004004826.1| - 0.011 15.1 0.0 0.069 12.4 0.0 2.0 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap PhoD PF09423.5 gi|312137489|ref|YP_004004826.1| - 0.021 13.4 0.0 0.044 12.3 0.0 1.6 2 0 0 2 2 2 0 PhoD-like phosphatase OKR_DC_1 PF01276.15 gi|312137489|ref|YP_004004826.1| - 0.042 12.3 0.0 0.06 11.8 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain GRAS PF03514.9 gi|312137489|ref|YP_004004826.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 GRAS domain family NAC PF01849.13 gi|312137490|ref|YP_004004827.1| - 1.9e-19 68.9 5.1 1.9e-19 68.9 3.6 1.8 2 1 0 2 2 2 1 NAC domain UBA PF00627.26 gi|312137490|ref|YP_004004827.1| - 4.4e-10 39.0 0.1 4.4e-10 39.0 0.1 1.9 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|312137490|ref|YP_004004827.1| - 0.002 17.6 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain SPT6_acidic PF14632.1 gi|312137490|ref|YP_004004827.1| - 0.0078 16.3 0.2 0.014 15.5 0.2 1.4 1 0 0 1 1 1 1 Acidic N-terminal SPT6 RTC4 PF14474.1 gi|312137490|ref|YP_004004827.1| - 0.021 14.7 0.8 0.096 12.6 0.1 2.0 2 0 0 2 2 2 0 RTC4-like domain CUE PF02845.11 gi|312137490|ref|YP_004004827.1| - 0.061 12.8 0.2 0.92 9.0 0.0 2.7 2 1 1 3 3 3 0 CUE domain TIP49 PF06068.8 gi|312137490|ref|YP_004004827.1| - 0.12 11.0 5.4 0.14 10.8 3.7 1.0 1 0 0 1 1 1 0 TIP49 C-terminus HMA PF00403.21 gi|312137490|ref|YP_004004827.1| - 0.37 10.9 4.8 12 6.1 0.1 2.7 2 1 1 3 3 3 0 Heavy-metal-associated domain TGT PF01702.13 gi|312137491|ref|YP_004004828.1| - 1.4e-56 191.4 0.0 2.3e-56 190.7 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|312137491|ref|YP_004004828.1| - 5.9e-27 93.3 0.1 1.2e-25 89.0 0.0 2.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|312137491|ref|YP_004004828.1| - 2.3e-19 68.8 0.3 2.3e-19 68.8 0.2 3.0 4 0 0 4 4 4 1 PUA domain UPF0113 PF03657.8 gi|312137491|ref|YP_004004828.1| - 0.0058 16.3 0.1 0.014 15.0 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Glyco_hydro_14 PF01373.12 gi|312137491|ref|YP_004004828.1| - 0.21 10.3 0.0 0.34 9.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 14 Methyltransf_30 PF05430.6 gi|312137492|ref|YP_004004829.1| - 5e-30 103.7 0.0 1e-29 102.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|312137492|ref|YP_004004829.1| - 1e-06 29.2 0.0 3.9e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|312137492|ref|YP_004004829.1| - 3.1e-05 24.2 0.0 5.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|312137492|ref|YP_004004829.1| - 4.2e-05 23.1 1.0 0.046 13.3 0.1 2.6 3 0 0 3 3 3 2 Methyltransferase domain Spermine_synth PF01564.12 gi|312137492|ref|YP_004004829.1| - 0.0003 19.8 0.4 0.0009 18.2 0.0 1.9 2 0 0 2 2 2 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|312137492|ref|YP_004004829.1| - 0.0013 18.7 0.0 0.0028 17.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|312137492|ref|YP_004004829.1| - 0.004 16.5 0.1 0.018 14.3 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|312137492|ref|YP_004004829.1| - 0.023 14.2 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|312137492|ref|YP_004004829.1| - 0.048 12.7 0.0 0.096 11.7 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Radical_SAM PF04055.16 gi|312137493|ref|YP_004004830.1| - 1.8e-21 76.9 1.6 2.5e-21 76.5 1.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|312137493|ref|YP_004004830.1| - 1.3e-13 51.2 0.8 2.4e-13 50.3 0.5 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|312137493|ref|YP_004004830.1| - 3.2e-10 40.0 0.1 6.4e-10 39.1 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DNA_pol3_beta_3 PF02768.10 gi|312137493|ref|YP_004004830.1| - 0.047 13.2 0.1 0.083 12.4 0.1 1.4 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain DUF211 PF02680.9 gi|312137494|ref|YP_004004831.1| - 3.7e-38 129.2 1.1 4.1e-38 129.0 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF2765 PF10963.3 gi|312137494|ref|YP_004004831.1| - 0.1 12.5 0.1 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2765) ACT PF01842.20 gi|312137494|ref|YP_004004831.1| - 0.14 11.7 0.2 0.96 9.0 0.0 2.1 2 0 0 2 2 2 0 ACT domain Metallophos PF00149.23 gi|312137495|ref|YP_004004832.1| - 5.6e-15 55.2 1.3 8.4e-15 54.6 0.9 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|312137495|ref|YP_004004832.1| - 1.5e-09 37.8 0.0 2e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RDD PF06271.7 gi|312137496|ref|YP_004004833.1| - 5.3e-17 62.0 7.0 6.5e-17 61.7 4.8 1.1 1 0 0 1 1 1 1 RDD family TFIID_90kDa PF04494.10 gi|312137496|ref|YP_004004833.1| - 0.13 12.2 0.9 0.25 11.4 0.5 1.5 1 1 0 1 1 1 0 WD40 associated region in TFIID subunit DUF4149 PF13664.1 gi|312137496|ref|YP_004004833.1| - 0.16 12.0 2.9 0.39 10.7 2.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) Peptidase_M56 PF05569.6 gi|312137496|ref|YP_004004833.1| - 0.45 9.4 11.1 0.75 8.7 7.7 1.4 1 1 0 1 1 1 0 BlaR1 peptidase M56 DUF3278 PF11683.3 gi|312137496|ref|YP_004004833.1| - 0.66 9.9 6.7 1.1 9.2 4.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) PrgI PF12666.2 gi|312137496|ref|YP_004004833.1| - 1.5 8.9 6.6 1.3 9.2 3.8 1.6 1 1 0 1 1 1 0 PrgI family protein CbiQ PF02361.11 gi|312137496|ref|YP_004004833.1| - 2.1 7.8 6.6 3.3 7.1 4.6 1.4 1 1 0 1 1 1 0 Cobalt transport protein AIRS_C PF02769.17 gi|312137497|ref|YP_004004834.1| - 6e-30 104.2 2.9 9.8e-30 103.5 2.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|312137497|ref|YP_004004834.1| - 1e-17 64.1 0.1 2.4e-17 62.9 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Methyltransf_18 PF12847.2 gi|312137498|ref|YP_004004835.1| - 1.4e-18 67.5 0.1 1.9e-18 67.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|312137498|ref|YP_004004835.1| - 4.4e-15 55.5 1.0 6.3e-15 55.0 0.7 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|312137498|ref|YP_004004835.1| - 1.6e-12 47.1 1.3 4.1e-12 45.8 0.8 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|312137498|ref|YP_004004835.1| - 3.8e-09 36.5 0.0 5.8e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|312137498|ref|YP_004004835.1| - 4.1e-08 33.5 0.0 6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|312137498|ref|YP_004004835.1| - 6.9e-08 32.2 0.3 1.2e-07 31.3 0.2 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|312137498|ref|YP_004004835.1| - 7e-08 32.2 0.1 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.12 gi|312137498|ref|YP_004004835.1| - 1.4e-07 30.8 0.6 3e-07 29.6 0.2 1.5 1 1 0 2 2 2 1 O-methyltransferase Met_10 PF02475.11 gi|312137498|ref|YP_004004835.1| - 3.6e-07 29.9 0.3 6.7e-07 29.0 0.2 1.3 1 1 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|312137498|ref|YP_004004835.1| - 3.8e-07 29.5 3.7 4.7e-07 29.2 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|312137498|ref|YP_004004835.1| - 7.2e-07 28.9 0.2 9.1e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|312137498|ref|YP_004004835.1| - 9.1e-07 28.2 0.6 2.5e-06 26.7 0.2 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|312137498|ref|YP_004004835.1| - 2.3e-06 26.8 0.1 2.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|312137498|ref|YP_004004835.1| - 6.2e-06 26.6 0.0 9.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|312137498|ref|YP_004004835.1| - 9.1e-06 24.8 0.1 1.8e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|312137498|ref|YP_004004835.1| - 1.1e-05 25.8 0.0 1.6e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|312137498|ref|YP_004004835.1| - 1.2e-05 24.7 0.2 3e-05 23.5 0.1 1.6 1 1 1 2 2 2 1 Nodulation protein S (NodS) DUF633 PF04816.7 gi|312137498|ref|YP_004004835.1| - 1.8e-05 24.1 2.7 2.4e-05 23.8 1.9 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) Methyltransf_24 PF13578.1 gi|312137498|ref|YP_004004835.1| - 4.5e-05 24.2 0.0 6.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|312137498|ref|YP_004004835.1| - 7.3e-05 21.9 2.4 9.3e-05 21.6 1.6 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Cons_hypoth95 PF03602.10 gi|312137498|ref|YP_004004835.1| - 0.00016 21.1 0.1 0.00024 20.5 0.1 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|312137498|ref|YP_004004835.1| - 0.00042 20.0 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|312137498|ref|YP_004004835.1| - 0.0027 16.4 0.2 0.004 15.9 0.2 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|312137498|ref|YP_004004835.1| - 0.0038 16.3 0.5 0.0056 15.8 0.3 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|312137498|ref|YP_004004835.1| - 0.0088 15.2 0.3 0.022 13.9 0.1 1.7 1 1 1 2 2 2 1 Tellurite resistance protein TehB PRMT5 PF05185.11 gi|312137498|ref|YP_004004835.1| - 0.4 9.5 1.6 0.43 9.4 0.5 1.4 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Flavoprotein PF02441.14 gi|312137499|ref|YP_004004836.1| - 8.8e-29 99.7 0.0 1.2e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|312137500|ref|YP_004004837.1| - 3.2e-17 62.6 0.4 8.4e-17 61.3 0.3 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|312137500|ref|YP_004004837.1| - 0.0029 16.9 0.4 0.015 14.6 0.0 2.3 2 1 0 2 2 2 1 HDOD domain MoaE PF02391.12 gi|312137501|ref|YP_004004838.1| - 1.5e-15 57.0 0.2 1.8e-15 56.8 0.2 1.1 1 0 0 1 1 1 1 MoaE protein CTP_transf_2 PF01467.21 gi|312137502|ref|YP_004004839.1| - 3.6e-17 62.8 0.0 5.1e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase ABC_tran PF00005.22 gi|312137503|ref|YP_004004840.1| - 2.3e-58 196.3 0.0 2e-29 102.6 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|312137503|ref|YP_004004840.1| - 3.6e-17 63.2 0.8 0.00028 20.9 0.0 4.2 3 1 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|312137503|ref|YP_004004840.1| - 3.2e-12 46.2 0.9 0.041 12.9 0.1 4.2 4 0 0 4 4 4 4 AAA ATPase domain AAA_10 PF12846.2 gi|312137503|ref|YP_004004840.1| - 1.7e-08 34.2 4.3 0.87 8.9 0.1 5.2 3 1 2 5 5 5 1 AAA-like domain DUF258 PF03193.11 gi|312137503|ref|YP_004004840.1| - 7.7e-08 31.6 0.6 0.0024 17.0 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|312137503|ref|YP_004004840.1| - 3.1e-07 29.8 4.7 0.00092 18.4 0.0 3.4 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|312137503|ref|YP_004004840.1| - 4.7e-07 30.3 0.2 0.021 15.1 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|312137503|ref|YP_004004840.1| - 6.8e-07 29.4 1.2 0.024 14.6 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|312137503|ref|YP_004004840.1| - 1.5e-06 28.4 8.9 0.048 13.8 1.0 4.0 3 1 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|312137503|ref|YP_004004840.1| - 1.1e-05 24.9 4.8 3.5 6.9 0.0 4.6 4 1 0 4 4 4 0 AAA domain UPF0079 PF02367.12 gi|312137503|ref|YP_004004840.1| - 1.2e-05 24.9 0.5 0.12 12.0 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|312137503|ref|YP_004004840.1| - 1.4e-05 24.5 0.9 0.15 11.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|312137503|ref|YP_004004840.1| - 3.8e-05 23.9 3.4 0.09 13.0 0.2 4.0 3 1 1 4 4 3 1 AAA domain Miro PF08477.8 gi|312137503|ref|YP_004004840.1| - 5.3e-05 23.6 0.3 0.14 12.6 0.0 3.0 3 0 0 3 3 2 1 Miro-like protein SbcCD_C PF13558.1 gi|312137503|ref|YP_004004840.1| - 5.9e-05 22.9 0.2 0.0079 16.0 0.0 3.5 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|312137503|ref|YP_004004840.1| - 0.00019 21.0 1.9 1.8 8.1 0.0 3.5 3 0 0 3 3 3 2 AAA domain MobB PF03205.9 gi|312137503|ref|YP_004004840.1| - 0.00032 20.4 1.0 0.32 10.6 0.1 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|312137503|ref|YP_004004840.1| - 0.00036 20.2 0.6 0.39 10.5 0.0 3.4 3 0 0 3 3 3 1 Part of AAA domain AAA_17 PF13207.1 gi|312137503|ref|YP_004004840.1| - 0.00042 21.1 9.5 0.28 11.9 1.4 4.2 2 2 1 3 3 3 2 AAA domain AAA_30 PF13604.1 gi|312137503|ref|YP_004004840.1| - 0.00044 19.9 0.4 1.1 8.8 0.0 3.1 3 0 0 3 3 3 1 AAA domain PhoH PF02562.11 gi|312137503|ref|YP_004004840.1| - 0.00054 19.2 0.1 0.39 9.9 0.0 2.6 2 0 0 2 2 2 1 PhoH-like protein PduV-EutP PF10662.4 gi|312137503|ref|YP_004004840.1| - 0.00099 18.6 0.0 0.42 10.0 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|312137503|ref|YP_004004840.1| - 0.0011 18.1 0.1 0.041 12.9 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin MMR_HSR1 PF01926.18 gi|312137503|ref|YP_004004840.1| - 0.0012 18.7 0.3 0.16 11.8 0.2 3.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA PF00004.24 gi|312137503|ref|YP_004004840.1| - 0.0017 18.5 2.4 14 5.8 0.0 4.3 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|312137503|ref|YP_004004840.1| - 0.0017 17.2 1.1 0.9 8.3 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|312137503|ref|YP_004004840.1| - 0.0025 17.5 2.2 1.5 8.4 0.5 2.9 2 1 0 2 2 2 2 Archaeal ATPase AAA_33 PF13671.1 gi|312137503|ref|YP_004004840.1| - 0.0068 16.2 0.2 5.3 6.9 0.0 3.0 3 0 0 3 3 2 0 AAA domain cobW PF02492.14 gi|312137503|ref|YP_004004840.1| - 0.0072 15.7 3.6 0.57 9.6 0.3 3.1 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.10 gi|312137503|ref|YP_004004840.1| - 0.0072 15.0 0.0 0.49 9.0 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein PRK PF00485.13 gi|312137503|ref|YP_004004840.1| - 0.0091 15.5 0.0 0.61 9.6 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.1 gi|312137503|ref|YP_004004840.1| - 0.012 15.5 2.7 2.8 7.8 0.0 3.7 3 1 1 4 4 3 0 AAA domain NACHT PF05729.7 gi|312137503|ref|YP_004004840.1| - 0.016 14.8 3.7 2.2 7.8 0.3 2.6 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|312137503|ref|YP_004004840.1| - 0.023 14.1 1.3 2.1 7.7 0.0 3.3 4 0 0 4 4 3 0 IstB-like ATP binding protein T2SE PF00437.15 gi|312137503|ref|YP_004004840.1| - 0.023 13.6 0.9 3.1 6.6 0.1 2.8 3 0 0 3 3 3 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|312137503|ref|YP_004004840.1| - 0.037 13.4 1.4 11 5.3 0.0 3.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|312137503|ref|YP_004004840.1| - 0.044 13.7 1.5 10 6.0 0.1 2.8 2 1 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|312137503|ref|YP_004004840.1| - 0.063 12.5 0.9 4.4 6.5 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_13 PF13166.1 gi|312137503|ref|YP_004004840.1| - 0.065 11.6 0.5 2 6.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|312137503|ref|YP_004004840.1| - 0.066 12.6 0.9 8.8 5.7 0.1 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain GTP_EFTU PF00009.22 gi|312137503|ref|YP_004004840.1| - 0.21 10.9 1.9 1 8.7 0.1 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain KaiC PF06745.8 gi|312137503|ref|YP_004004840.1| - 0.62 9.1 8.8 8.7 5.3 0.4 4.2 4 1 0 4 4 4 0 KaiC ABC_ATPase PF09818.4 gi|312137503|ref|YP_004004840.1| - 0.88 8.0 8.4 11 4.4 0.2 3.9 4 1 0 4 4 4 0 Predicted ATPase of the ABC class Flavin_Reduct PF01613.13 gi|312137504|ref|YP_004004841.1| - 6.4e-28 97.5 0.0 8.4e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|312137504|ref|YP_004004841.1| - 9.5e-05 22.0 0.4 0.00012 21.6 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_oxidase PF01243.15 gi|312137504|ref|YP_004004841.1| - 0.017 15.1 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF295 PF03478.13 gi|312137504|ref|YP_004004841.1| - 0.037 13.3 0.0 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF295) DAG1 PF05454.6 gi|312137504|ref|YP_004004841.1| - 0.042 13.0 1.1 0.045 12.9 0.1 1.4 2 0 0 2 2 2 0 Dystroglycan (Dystrophin-associated glycoprotein 1) Usp PF00582.21 gi|312137505|ref|YP_004004842.1| - 2.8e-27 95.6 0.0 3.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family MarR_2 PF12802.2 gi|312137506|ref|YP_004004843.1| - 6.8e-12 44.8 0.0 8.2e-11 41.4 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|312137506|ref|YP_004004843.1| - 6.2e-11 41.5 1.6 6.7e-11 41.4 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|312137506|ref|YP_004004843.1| - 2.4e-07 30.3 0.4 6.8e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|312137506|ref|YP_004004843.1| - 8.5e-07 28.9 0.2 3.9e-06 26.7 0.1 2.2 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|312137506|ref|YP_004004843.1| - 1.8e-06 28.1 0.1 6.9e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|312137506|ref|YP_004004843.1| - 5.4e-06 26.1 0.2 1.4e-05 24.7 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|312137506|ref|YP_004004843.1| - 2.5e-05 23.9 0.4 0.00022 20.9 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|312137506|ref|YP_004004843.1| - 0.00015 21.5 0.0 0.00068 19.5 0.0 2.1 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|312137506|ref|YP_004004843.1| - 0.0006 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|312137506|ref|YP_004004843.1| - 0.00081 18.9 0.1 0.0021 17.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|312137506|ref|YP_004004843.1| - 0.0018 17.8 0.0 0.0037 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|312137506|ref|YP_004004843.1| - 0.0018 17.9 0.6 0.0076 15.9 0.4 2.2 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|312137506|ref|YP_004004843.1| - 0.0066 15.8 0.1 0.017 14.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|312137506|ref|YP_004004843.1| - 0.0079 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|312137506|ref|YP_004004843.1| - 0.0094 15.5 0.1 0.023 14.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|312137506|ref|YP_004004843.1| - 0.023 14.5 0.1 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix HxlR PF01638.12 gi|312137506|ref|YP_004004843.1| - 0.023 14.2 0.3 0.081 12.5 0.2 1.9 2 0 0 2 2 2 0 HxlR-like helix-turn-helix S10_plectin PF03501.10 gi|312137506|ref|YP_004004843.1| - 0.024 14.4 0.1 0.24 11.2 0.0 2.2 2 0 0 2 2 2 0 Plectin/S10 domain HTH_28 PF13518.1 gi|312137506|ref|YP_004004843.1| - 0.042 13.8 0.3 0.17 11.8 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|312137506|ref|YP_004004843.1| - 0.094 12.8 0.3 0.31 11.1 0.0 2.0 2 0 0 2 2 1 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|312137506|ref|YP_004004843.1| - 0.099 12.5 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.2 gi|312137506|ref|YP_004004843.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|312137506|ref|YP_004004843.1| - 0.13 11.8 0.0 0.39 10.3 0.0 1.9 1 0 0 1 1 1 0 LexA DNA binding domain DHHA1 PF02272.14 gi|312137507|ref|YP_004004844.1| - 3.4e-14 52.3 0.0 7.2e-14 51.2 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|312137507|ref|YP_004004844.1| - 1.7e-11 43.9 0.0 3e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 DHH family RE_HaeIII PF09556.5 gi|312137507|ref|YP_004004844.1| - 0.029 13.2 0.1 0.051 12.4 0.1 1.4 1 0 0 1 1 1 0 HaeIII restriction endonuclease SRP19 PF01922.12 gi|312137508|ref|YP_004004845.1| - 3.4e-28 98.0 3.1 3.7e-28 97.9 2.1 1.0 1 0 0 1 1 1 1 SRP19 protein Adeno_VII PF03228.9 gi|312137508|ref|YP_004004845.1| - 0.07 13.7 0.2 0.13 12.8 0.0 1.4 1 1 0 1 1 1 0 Adenoviral core protein VII HEM4 PF02602.10 gi|312137509|ref|YP_004004846.1| - 1.3e-47 161.9 0.0 1.6e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD BRCT PF00533.21 gi|312137509|ref|YP_004004846.1| - 0.012 15.7 0.1 3 8.0 0.0 2.4 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain Glyco_hydro_3_C PF01915.17 gi|312137509|ref|YP_004004846.1| - 0.04 13.4 0.9 0.06 12.8 0.6 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain TusA PF01206.12 gi|312137509|ref|YP_004004846.1| - 0.076 12.6 0.1 3.7 7.2 0.0 2.7 2 0 0 2 2 2 0 Sulfurtransferase TusA TP_methylase PF00590.15 gi|312137510|ref|YP_004004847.1| - 2.2e-50 171.3 0.0 2.5e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|312137510|ref|YP_004004847.1| - 0.028 14.5 0.5 0.089 12.9 0.1 1.9 1 1 0 2 2 2 0 Radical SAM superfamily CTV_P23 PF04808.7 gi|312137510|ref|YP_004004847.1| - 0.13 11.5 0.1 0.2 10.9 0.1 1.2 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein GATase_5 PF13507.1 gi|312137511|ref|YP_004004848.1| - 6.8e-40 136.6 0.0 8.3e-40 136.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|312137511|ref|YP_004004848.1| - 4.8e-09 35.9 0.0 6.3e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|312137511|ref|YP_004004848.1| - 6.4e-07 28.9 0.1 4e-06 26.3 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|312137511|ref|YP_004004848.1| - 4e-06 26.5 0.0 7.3e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|312137511|ref|YP_004004848.1| - 0.00024 20.7 0.0 0.00062 19.4 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|312137511|ref|YP_004004848.1| - 0.01 15.1 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase Peptidase_C26 PF07722.8 gi|312137511|ref|YP_004004848.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.7 2 0 0 2 2 2 0 Peptidase C26 PurS PF02700.9 gi|312137512|ref|YP_004004849.1| - 3.7e-26 90.8 0.1 4.2e-26 90.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SAICAR_synt PF01259.13 gi|312137513|ref|YP_004004850.1| - 1.1e-64 217.9 1.3 1.2e-64 217.7 0.9 1.0 1 0 0 1 1 1 1 SAICAR synthetase YxiJ PF14176.1 gi|312137513|ref|YP_004004850.1| - 0.039 14.0 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 YxiJ-like protein