# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SIS PF01380.22 gi|312136231|ref|YP_004003568.1| - 4e-59 198.2 0.5 9.4e-30 103.1 0.9 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|312136231|ref|YP_004003568.1| - 2.7e-23 82.6 0.0 4.8e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|312136231|ref|YP_004003568.1| - 2.4e-19 69.5 0.0 7.9e-19 67.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|312136231|ref|YP_004003568.1| - 0.00032 19.7 0.0 0.00051 19.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II BshC PF10079.9 gi|312136231|ref|YP_004003568.1| - 0.027 13.3 0.2 0.081 11.6 0.0 1.8 2 0 0 2 2 2 0 Bacillithiol biosynthesis BshC Na_Ca_ex PF01699.24 gi|312136231|ref|YP_004003568.1| - 0.23 11.4 0.3 1 9.3 0.3 1.9 1 1 1 2 2 2 0 Sodium/calcium exchanger protein ATP-cone PF03477.16 gi|312136231|ref|YP_004003568.1| - 1.7 9.3 5.0 2 9.0 0.2 2.8 3 0 0 3 3 3 0 ATP cone domain Cdc6_C PF09079.11 gi|312136232|ref|YP_004003569.1| - 1.5e-17 63.3 0.5 3.4e-17 62.2 0.5 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|312136232|ref|YP_004003569.1| - 4.5e-11 43.2 0.0 1e-10 42.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|312136232|ref|YP_004003569.1| - 5e-11 43.3 0.0 4.5e-10 40.2 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|312136232|ref|YP_004003569.1| - 1.1e-08 35.5 0.0 2.3e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|312136232|ref|YP_004003569.1| - 0.00087 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ATPase_2 PF01637.18 gi|312136232|ref|YP_004003569.1| - 0.0012 18.8 0.3 0.0028 17.6 0.3 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|312136232|ref|YP_004003569.1| - 0.0018 17.5 0.0 0.0047 16.1 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activat PF00158.26 gi|312136232|ref|YP_004003569.1| - 0.0024 17.6 0.0 0.0044 16.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.15 gi|312136232|ref|YP_004003569.1| - 0.0035 17.4 0.1 0.011 15.8 0.1 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF815 PF05673.13 gi|312136232|ref|YP_004003569.1| - 0.0053 16.0 0.0 0.0099 15.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|312136232|ref|YP_004003569.1| - 0.006 16.0 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|312136232|ref|YP_004003569.1| - 0.007 16.4 0.1 0.019 14.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|312136232|ref|YP_004003569.1| - 0.0099 16.4 0.1 0.028 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rep_3 PF01051.21 gi|312136232|ref|YP_004003569.1| - 0.015 15.1 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 Initiator Replication protein Torsin PF06309.11 gi|312136232|ref|YP_004003569.1| - 0.027 14.6 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 Torsin TIP49_C PF17856.1 gi|312136232|ref|YP_004003569.1| - 0.03 14.4 0.0 0.093 12.9 0.0 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain DUF87 PF01935.17 gi|312136232|ref|YP_004003569.1| - 0.033 14.3 0.4 0.86 9.7 0.1 2.7 2 1 1 3 3 3 0 Helicase HerA, central domain AAA_7 PF12775.7 gi|312136232|ref|YP_004003569.1| - 0.042 13.4 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|312136232|ref|YP_004003569.1| - 0.046 13.7 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|312136232|ref|YP_004003569.1| - 0.049 13.0 0.0 0.097 12.0 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_19 PF13245.6 gi|312136232|ref|YP_004003569.1| - 0.051 13.9 0.2 0.2 12.0 0.2 2.1 2 1 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|312136232|ref|YP_004003569.1| - 0.053 13.4 0.0 0.37 10.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein E2F_TDP PF02319.20 gi|312136232|ref|YP_004003569.1| - 0.057 13.5 0.3 0.19 11.8 0.1 2.1 2 1 0 2 2 1 0 E2F/DP family winged-helix DNA-binding domain RNA_helicase PF00910.22 gi|312136232|ref|YP_004003569.1| - 0.072 13.5 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_2 PF07724.14 gi|312136232|ref|YP_004003569.1| - 0.077 13.1 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Microtub_bd PF16796.5 gi|312136232|ref|YP_004003569.1| - 0.094 12.7 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding DEAD PF00270.29 gi|312136232|ref|YP_004003569.1| - 2.4 7.9 4.4 5.2 6.8 0.3 2.5 2 1 1 3 3 3 0 DEAD/DEAH box helicase OTCace_N PF02729.21 gi|312136233|ref|YP_004003570.1| - 2.2e-49 167.3 0.0 3.6e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|312136233|ref|YP_004003570.1| - 1.1e-30 106.8 0.0 1.8e-30 106.1 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Class_IIIsignal PF04021.12 gi|312136234|ref|YP_004003571.1| - 0.00018 21.4 6.7 0.00029 20.7 6.7 1.3 1 0 0 1 1 1 1 Class III signal peptide Rib_5-P_isom_A PF06026.14 gi|312136235|ref|YP_004003572.1| - 4.5e-66 221.7 0.0 5.6e-66 221.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|312136235|ref|YP_004003572.1| - 1.9e-07 31.2 0.1 0.00021 21.3 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|312136235|ref|YP_004003572.1| - 0.014 14.5 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain UPF0179 PF03684.13 gi|312136236|ref|YP_004003573.1| - 7.4e-51 171.7 6.4 8.3e-51 171.6 6.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|312136236|ref|YP_004003573.1| - 1.4 9.1 9.2 0.68 10.2 1.5 2.2 1 1 1 2 2 2 0 Transposase DDE domain Fe-ADH_2 PF13685.6 gi|312136237|ref|YP_004003574.1| - 3e-76 256.4 4.5 3e-76 256.4 4.5 1.4 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|312136237|ref|YP_004003574.1| - 3.4e-24 85.4 3.8 3.7e-23 81.9 3.8 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|312136237|ref|YP_004003574.1| - 3.5e-09 36.2 0.3 7.3e-09 35.2 0.3 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase QRPTase_C PF01729.19 gi|312136238|ref|YP_004003575.1| - 1.6e-21 76.9 0.0 2.2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|312136238|ref|YP_004003575.1| - 1.2e-11 44.5 0.0 2.4e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|312136238|ref|YP_004003575.1| - 0.00079 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NAPRTase_N PF17767.1 gi|312136238|ref|YP_004003575.1| - 0.0056 17.1 0.0 0.21 12.0 0.0 2.2 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E1-E2_ATPase PF00122.20 gi|312136239|ref|YP_004003576.1| - 1.1e-49 168.5 1.7 1.1e-49 168.5 1.7 3.7 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_N PF00690.26 gi|312136239|ref|YP_004003576.1| - 4.5e-21 74.3 0.0 1.1e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|312136239|ref|YP_004003576.1| - 3.8e-20 73.1 0.1 7.1e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.21 gi|312136239|ref|YP_004003576.1| - 8.4e-13 48.4 19.1 1.1e-12 48.0 13.2 2.5 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase PF13246.6 gi|312136239|ref|YP_004003576.1| - 7.6e-09 35.5 0.0 1.9e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|312136239|ref|YP_004003576.1| - 0.00044 20.7 0.0 0.00079 19.9 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|312136239|ref|YP_004003576.1| - 0.014 15.1 4.4 0.17 11.6 0.1 3.2 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Rick_17kDa_Anti PF05433.15 gi|312136240|ref|YP_004003577.1| - 0.0034 17.2 0.4 0.0085 15.9 0.4 1.6 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|312136240|ref|YP_004003577.1| - 0.045 13.5 1.5 0.045 13.5 1.5 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|312136240|ref|YP_004003577.1| - 0.094 12.7 3.6 0.29 11.1 3.6 1.9 1 1 0 1 1 1 0 Glycine zipper CoA_binding PF02629.19 gi|312136241|ref|YP_004003578.1| - 9.4e-28 96.8 1.4 5.1e-27 94.4 0.8 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|312136241|ref|YP_004003578.1| - 3.5e-18 65.9 0.1 6.1e-18 65.1 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|312136241|ref|YP_004003578.1| - 1.1e-13 51.1 0.0 2.1e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|312136241|ref|YP_004003578.1| - 8.8e-05 23.0 0.0 0.00019 21.9 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain IlvN PF07991.12 gi|312136241|ref|YP_004003578.1| - 0.014 15.0 0.3 0.03 13.9 0.3 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|312136241|ref|YP_004003578.1| - 0.017 16.0 0.3 0.04 14.8 0.3 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF2325 PF10087.9 gi|312136241|ref|YP_004003578.1| - 0.14 12.3 0.1 0.49 10.6 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) HMG-CoA_red PF00368.18 gi|312136242|ref|YP_004003579.1| - 1.2e-138 462.1 5.9 1.4e-138 461.9 5.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase VIT1 PF01988.19 gi|312136243|ref|YP_004003580.1| - 1.8e-10 41.1 18.1 3.9e-08 33.4 3.4 2.0 1 1 1 2 2 2 2 VIT family YIEGIA PF14045.6 gi|312136243|ref|YP_004003580.1| - 0.03 13.2 1.6 0.048 12.5 0.1 2.0 1 1 1 2 2 2 0 YIEGIA protein HTH_12 PF08461.10 gi|312136243|ref|YP_004003580.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HR_lesion PF05514.11 gi|312136243|ref|YP_004003580.1| - 2 8.6 7.8 4.7 7.4 0.1 2.9 1 1 2 3 3 3 0 HR-like lesion-inducing TCR_zetazeta PF11628.8 gi|312136243|ref|YP_004003580.1| - 3 7.6 5.1 0.35 10.6 0.5 1.8 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain DUF116 PF01976.17 gi|312136244|ref|YP_004003581.1| - 1.3e-46 158.0 5.5 1.6e-46 157.7 5.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 HypA PF01155.19 gi|312136246|ref|YP_004003583.1| - 0.0015 18.5 4.4 0.0016 18.4 4.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|312136246|ref|YP_004003583.1| - 0.003 17.6 4.1 0.0057 16.7 4.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|312136246|ref|YP_004003583.1| - 0.006 16.6 4.6 0.0064 16.5 4.6 1.3 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|312136246|ref|YP_004003583.1| - 0.21 11.6 10.5 1.6 8.8 1.0 2.8 2 1 1 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|312136246|ref|YP_004003583.1| - 0.55 10.1 10.7 1.1 9.1 2.8 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3797 PF12677.7 gi|312136246|ref|YP_004003583.1| - 3.2 7.7 10.1 5.9 6.9 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF5320 PF17253.2 gi|312136247|ref|YP_004003584.1| - 0.0001 23.3 0.1 0.00012 23.1 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5320) DUF5383 PF17355.2 gi|312136247|ref|YP_004003584.1| - 0.26 11.7 4.4 0.32 11.4 4.4 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5383) BacA PF02673.18 gi|312136249|ref|YP_004003586.1| - 7.1e-74 248.7 12.5 8.4e-74 248.5 12.5 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF3098 PF11297.8 gi|312136249|ref|YP_004003586.1| - 0.07 12.7 2.6 3.8 7.2 0.0 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3098) INCENP_N PF12178.8 gi|312136249|ref|YP_004003586.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Chromosome passenger complex (CPC) protein INCENP N terminal DUF21 PF01595.20 gi|312136249|ref|YP_004003586.1| - 0.25 11.0 0.1 0.25 11.0 0.1 2.7 2 1 0 2 2 2 0 Cyclin M transmembrane N-terminal domain DUF3188 PF11384.8 gi|312136249|ref|YP_004003586.1| - 0.32 10.7 8.5 2.2 8.0 0.3 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) Gram_pos_anchor PF00746.21 gi|312136249|ref|YP_004003586.1| - 4.6 7.3 7.0 1.4 8.9 0.1 3.1 3 0 0 3 3 3 0 LPXTG cell wall anchor motif DUF2162 PF09930.9 gi|312136249|ref|YP_004003586.1| - 5 6.5 17.4 1.4 8.3 9.8 2.8 2 1 0 2 2 2 0 Predicted transporter (DUF2162) Phage_integrase PF00589.22 gi|312136250|ref|YP_004003587.1| - 2.5e-45 154.3 2.5 2.5e-45 154.3 2.5 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|312136250|ref|YP_004003587.1| - 7.3e-05 23.2 0.3 7.3e-05 23.2 0.3 2.1 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|312136250|ref|YP_004003587.1| - 0.00096 19.4 1.5 0.03 14.6 0.3 2.5 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|312136250|ref|YP_004003587.1| - 0.19 11.7 11.8 0.13 12.1 7.1 2.7 1 1 1 2 2 2 0 Archaeal phage integrase BcrAD_BadFG PF01869.20 gi|312136251|ref|YP_004003588.1| - 1e-38 133.4 0.3 1.2e-38 133.2 0.3 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|312136251|ref|YP_004003588.1| - 0.00033 20.2 1.6 0.015 14.8 0.2 2.6 2 2 0 2 2 2 2 ROK family FtsA PF14450.6 gi|312136251|ref|YP_004003588.1| - 0.042 14.3 0.1 0.079 13.4 0.0 1.6 1 1 0 1 1 1 0 Cell division protein FtsA NTPase_I-T PF01931.18 gi|312136252|ref|YP_004003589.1| - 1.6e-53 180.8 0.0 2.3e-53 180.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF84 CTP_transf_like PF01467.26 gi|312136252|ref|YP_004003589.1| - 9e-20 71.3 0.1 2.3e-19 70.0 0.0 1.7 2 0 0 2 2 2 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|312136252|ref|YP_004003589.1| - 0.0083 16.0 0.4 0.02 14.8 0.1 1.7 2 0 0 2 2 2 1 FAD synthetase FixS PF03597.15 gi|312136253|ref|YP_004003590.1| - 0.26 11.0 3.6 0.35 10.6 3.6 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Radical_SAM PF04055.21 gi|312136254|ref|YP_004003591.1| - 1.9e-15 57.7 0.0 5e-15 56.3 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|312136254|ref|YP_004003591.1| - 0.024 14.6 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain Aminotran_1_2 PF00155.21 gi|312136255|ref|YP_004003592.1| - 8.5e-77 258.8 0.0 9.8e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|312136255|ref|YP_004003592.1| - 9.1e-10 38.0 0.0 1.2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|312136255|ref|YP_004003592.1| - 3.9e-09 36.3 0.1 7.8e-09 35.3 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|312136255|ref|YP_004003592.1| - 1.6e-07 30.2 0.1 2.4e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|312136255|ref|YP_004003592.1| - 0.00049 19.5 0.0 0.00079 18.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase RNase_Zc3h12a PF11977.8 gi|312136255|ref|YP_004003592.1| - 0.0054 16.5 0.1 0.013 15.3 0.1 1.6 1 1 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain DUF1932 PF09130.11 gi|312136256|ref|YP_004003593.1| - 6.9e-12 45.2 0.0 1.1e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1932) F420_oxidored PF03807.17 gi|312136256|ref|YP_004003593.1| - 6.2e-09 36.3 0.1 1.5e-08 35.1 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|312136256|ref|YP_004003593.1| - 8.6e-05 22.6 0.1 0.0007 19.7 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|312136256|ref|YP_004003593.1| - 9.4e-05 22.6 0.0 0.00019 21.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|312136256|ref|YP_004003593.1| - 0.00028 20.3 0.1 0.00063 19.2 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|312136256|ref|YP_004003593.1| - 0.00063 20.5 0.0 0.0013 19.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|312136256|ref|YP_004003593.1| - 0.0007 20.2 0.5 0.1 13.3 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|312136256|ref|YP_004003593.1| - 0.00081 19.6 0.2 0.0024 18.1 0.1 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|312136256|ref|YP_004003593.1| - 0.015 15.4 0.2 0.078 13.1 0.1 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus SUKH_5 PF14567.6 gi|312136256|ref|YP_004003593.1| - 0.019 14.7 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall PYNP_C PF07831.13 gi|312136256|ref|YP_004003593.1| - 0.084 12.5 0.2 0.21 11.3 0.2 1.6 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF4413 PF14372.6 gi|312136256|ref|YP_004003593.1| - 0.22 11.9 2.8 0.24 11.8 0.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4413) Trypsin_2 PF13365.6 gi|312136257|ref|YP_004003594.1| - 0.00017 22.5 0.0 0.0072 17.2 0.0 2.1 1 1 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S55 PF05580.12 gi|312136257|ref|YP_004003594.1| - 0.00046 20.2 0.9 0.0021 18.1 0.2 2.0 2 0 0 2 2 2 1 SpoIVB peptidase S55 Trypsin PF00089.26 gi|312136257|ref|YP_004003594.1| - 0.0014 18.4 0.1 0.011 15.5 0.1 2.0 1 1 1 2 2 2 1 Trypsin Peptidase_S32 PF05579.13 gi|312136257|ref|YP_004003594.1| - 0.0044 16.3 0.3 0.021 14.0 0.3 1.8 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Peptidase_S29 PF02907.15 gi|312136257|ref|YP_004003594.1| - 0.0076 16.0 0.0 0.018 14.8 0.0 1.6 1 1 1 2 2 2 1 Hepatitis C virus NS3 protease GCV_T_C PF08669.11 gi|312136257|ref|YP_004003594.1| - 0.1 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain DEAD PF00270.29 gi|312136258|ref|YP_004003595.1| - 4.4e-24 85.2 0.0 9.3e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|312136258|ref|YP_004003595.1| - 5e-15 55.8 1.7 1.4e-14 54.4 0.0 2.7 2 1 1 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|312136258|ref|YP_004003595.1| - 1.6e-10 41.2 0.0 1.6e-10 41.2 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|312136258|ref|YP_004003595.1| - 0.004 15.9 0.0 0.0091 14.7 0.0 1.7 1 0 0 1 1 1 1 SNF2 family N-terminal domain SecA_DEAD PF07517.14 gi|312136258|ref|YP_004003595.1| - 0.032 13.5 0.0 0.11 11.8 0.0 1.8 1 1 0 1 1 1 0 SecA DEAD-like domain FtsA PF14450.6 gi|312136258|ref|YP_004003595.1| - 0.55 10.7 1.8 17 5.9 0.4 3.0 3 1 0 3 3 3 0 Cell division protein FtsA AMP-binding PF00501.28 gi|312136259|ref|YP_004003596.1| - 7.5e-119 397.1 0.0 8.9e-119 396.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|312136259|ref|YP_004003596.1| - 2.7e-18 66.7 0.4 1.1e-17 64.8 0.2 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF3784 PF12650.7 gi|312136259|ref|YP_004003596.1| - 0.032 14.4 1.2 1 9.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) LYTB PF02401.18 gi|312136259|ref|YP_004003596.1| - 0.074 12.3 0.0 0.31 10.3 0.0 1.9 2 0 0 2 2 2 0 LytB protein Cupin_2 PF07883.11 gi|312136260|ref|YP_004003597.1| - 1.4e-17 63.2 0.0 2.2e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|312136260|ref|YP_004003597.1| - 5.5e-11 42.3 0.2 1e-10 41.5 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|312136260|ref|YP_004003597.1| - 8.6e-11 41.7 0.3 1.2e-10 41.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|312136260|ref|YP_004003597.1| - 1.7e-06 28.4 0.0 2.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|312136260|ref|YP_004003597.1| - 3.3e-05 24.1 0.0 4.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|312136260|ref|YP_004003597.1| - 5.6e-05 23.1 0.0 7.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|312136260|ref|YP_004003597.1| - 0.00029 20.5 0.0 0.00054 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.6 gi|312136260|ref|YP_004003597.1| - 0.00058 19.7 0.0 0.00098 18.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-C_C PF11699.8 gi|312136260|ref|YP_004003597.1| - 0.0095 16.1 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|312136260|ref|YP_004003597.1| - 0.017 15.0 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|312136260|ref|YP_004003597.1| - 0.02 14.5 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Cupin ATP-grasp_2 PF08442.10 gi|312136261|ref|YP_004003598.1| - 6.4e-61 205.5 2.1 7e-61 205.3 1.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|312136261|ref|YP_004003598.1| - 4.1e-17 62.4 0.3 6.7e-17 61.7 0.3 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|312136261|ref|YP_004003598.1| - 1.3e-11 44.4 1.2 1.1e-10 41.4 0.6 2.3 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|312136261|ref|YP_004003598.1| - 3e-07 30.4 0.2 6.3e-07 29.4 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|312136261|ref|YP_004003598.1| - 2.6e-05 23.8 0.3 8.6e-05 22.1 0.1 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|312136261|ref|YP_004003598.1| - 4.8e-05 23.0 0.0 9.7e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain POR PF01558.18 gi|312136262|ref|YP_004003599.1| - 3.4e-38 131.5 0.2 4e-38 131.2 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|312136263|ref|YP_004003600.1| - 6e-36 123.5 0.0 8.8e-36 123.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PPR_2 PF13041.6 gi|312136263|ref|YP_004003600.1| - 0.025 14.7 0.4 0.069 13.4 0.4 1.7 1 0 0 1 1 1 0 PPR repeat family POR_N PF01855.19 gi|312136264|ref|YP_004003601.1| - 2.6e-81 272.7 0.1 3.3e-81 272.4 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|312136264|ref|YP_004003601.1| - 1e-22 80.4 0.0 2e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|312136264|ref|YP_004003601.1| - 4.8e-07 29.7 0.0 1.7e-06 27.9 0.0 1.9 2 1 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|312136264|ref|YP_004003601.1| - 4e-05 23.3 0.0 8.1e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|312136265|ref|YP_004003602.1| - 2.2e-14 52.5 11.9 5.3e-07 29.2 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136265|ref|YP_004003602.1| - 8e-13 48.8 20.9 3.2e-10 40.5 9.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136265|ref|YP_004003602.1| - 1.4e-10 41.1 17.5 2.1e-08 34.2 8.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136265|ref|YP_004003602.1| - 7e-09 36.5 10.0 0.00037 21.4 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|312136265|ref|YP_004003602.1| - 1.2e-08 34.7 13.4 0.00016 21.6 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136265|ref|YP_004003602.1| - 1.5e-08 34.6 23.3 4.1e-07 30.0 11.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136265|ref|YP_004003602.1| - 1e-07 31.6 11.7 6.8e-05 22.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136265|ref|YP_004003602.1| - 1.9e-07 31.1 11.9 6.8e-07 29.3 11.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136265|ref|YP_004003602.1| - 2.1e-06 28.2 9.3 0.00094 19.7 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|312136265|ref|YP_004003602.1| - 0.00031 21.0 13.0 0.03 14.8 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312136265|ref|YP_004003602.1| - 0.00051 20.5 11.7 0.081 13.5 12.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136265|ref|YP_004003602.1| - 0.0018 19.0 9.8 0.0094 16.7 0.4 2.4 2 1 0 2 2 2 1 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|312136265|ref|YP_004003602.1| - 0.0041 17.2 4.8 0.005 16.9 4.8 1.3 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|312136265|ref|YP_004003602.1| - 0.0099 16.7 9.6 0.073 13.9 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136265|ref|YP_004003602.1| - 0.021 15.8 15.9 0.3 12.1 3.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312136265|ref|YP_004003602.1| - 0.039 14.4 13.3 0.96 9.9 3.8 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain DUF3343 PF11823.8 gi|312136265|ref|YP_004003602.1| - 0.076 12.5 0.4 0.076 12.5 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) Fer4_18 PF13746.6 gi|312136265|ref|YP_004003602.1| - 0.18 12.0 10.6 0.27 11.4 2.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Wyosine_form PF08608.12 gi|312136266|ref|YP_004003603.1| - 7e-22 77.6 0.3 1.5e-21 76.5 0.0 1.8 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|312136266|ref|YP_004003603.1| - 6.4e-21 75.4 0.1 1.8e-20 74.0 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136266|ref|YP_004003603.1| - 0.069 13.4 1.4 0.38 11.0 1.3 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain AhpC-TSA PF00578.21 gi|312136267|ref|YP_004003604.1| - 2.2e-30 105.1 0.0 3e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|312136267|ref|YP_004003604.1| - 9.2e-11 41.7 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|312136267|ref|YP_004003604.1| - 1.5e-08 34.4 0.1 2.4e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Desulfoferrodox PF01880.18 gi|312136268|ref|YP_004003605.1| - 2.9e-28 98.3 0.0 3.7e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin TRAM PF01938.20 gi|312136269|ref|YP_004003606.1| - 3e-19 68.8 1.4 3.6e-19 68.5 1.4 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|312136269|ref|YP_004003606.1| - 0.011 15.4 0.9 0.032 14.0 0.2 1.9 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.23 gi|312136269|ref|YP_004003606.1| - 0.072 13.4 0.9 12 6.3 0.0 2.4 2 1 0 2 2 2 0 S1 RNA binding domain Prok-JAB PF14464.6 gi|312136270|ref|YP_004003607.1| - 3.4e-11 43.0 0.0 7.2e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|312136270|ref|YP_004003607.1| - 0.016 15.1 0.0 0.11 12.4 0.0 1.9 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.15 gi|312136270|ref|YP_004003607.1| - 0.14 12.1 0.4 0.37 10.7 0.1 1.7 2 0 0 2 2 2 0 RadC-like JAB domain Thg1 PF04446.12 gi|312136271|ref|YP_004003608.1| - 3.9e-27 94.8 0.0 5.6e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|312136271|ref|YP_004003608.1| - 7.4e-07 29.4 0.6 1.1e-06 28.8 0.6 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain BTB_2 PF02214.22 gi|312136271|ref|YP_004003608.1| - 0.11 12.8 0.1 0.65 10.4 0.0 2.1 2 0 0 2 2 2 0 BTB/POZ domain BK_channel_a PF03493.18 gi|312136271|ref|YP_004003608.1| - 0.14 12.3 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Calcium-activated BK potassium channel alpha subunit DUF108 PF01958.18 gi|312136272|ref|YP_004003609.1| - 1e-28 99.5 0.8 1.8e-28 98.7 0.5 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|312136272|ref|YP_004003609.1| - 3.4e-24 85.7 0.1 6.2e-24 84.9 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|312136272|ref|YP_004003609.1| - 9.7e-06 26.1 2.2 1.8e-05 25.2 0.4 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|312136272|ref|YP_004003609.1| - 2.1e-05 25.3 0.6 4.1e-05 24.4 0.1 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|312136272|ref|YP_004003609.1| - 0.00029 21.3 0.0 0.00051 20.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|312136272|ref|YP_004003609.1| - 0.00087 19.4 0.2 0.0019 18.2 0.2 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|312136272|ref|YP_004003609.1| - 0.0019 18.4 0.9 0.0073 16.4 0.1 2.1 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Glyco_tran_WecB PF03808.13 gi|312136272|ref|YP_004003609.1| - 0.038 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family PRC PF05239.16 gi|312136273|ref|YP_004003610.1| - 1.1e-12 47.8 5.5 1.6e-11 44.1 5.5 2.0 1 1 0 1 1 1 1 PRC-barrel domain MCM PF00493.23 gi|312136274|ref|YP_004003611.1| - 1e-96 322.4 0.4 4.9e-62 208.9 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|312136274|ref|YP_004003611.1| - 2.6e-38 130.7 1.0 2.6e-38 130.7 1.0 1.8 2 0 0 2 2 2 1 MCM OB domain MCM_lid PF17855.1 gi|312136274|ref|YP_004003611.1| - 3.3e-31 107.5 1.5 8.2e-31 106.3 1.5 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain Intein_splicing PF14890.6 gi|312136274|ref|YP_004003611.1| - 1.3e-18 67.2 5.3 1.3e-18 67.2 5.3 2.4 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|312136274|ref|YP_004003611.1| - 1.1e-15 57.7 1.2 7.3e-08 32.6 0.1 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain MCM_N PF14551.6 gi|312136274|ref|YP_004003611.1| - 2.4e-07 31.3 1.8 1.1e-06 29.2 0.6 2.8 2 0 0 2 2 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|312136274|ref|YP_004003611.1| - 0.00013 22.0 0.1 0.00099 19.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|312136274|ref|YP_004003611.1| - 0.0014 18.0 0.2 0.7 9.2 0.1 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|312136274|ref|YP_004003611.1| - 0.0023 18.3 0.0 0.0023 18.3 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) zf-RRN7 PF11781.8 gi|312136274|ref|YP_004003611.1| - 0.01 15.5 1.2 2.1 8.1 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF469 PF04320.14 gi|312136274|ref|YP_004003611.1| - 0.02 15.7 0.6 0.23 12.4 0.0 3.1 3 0 0 3 3 1 0 Protein with unknown function (DUF469) TrmB PF01978.19 gi|312136274|ref|YP_004003611.1| - 0.029 14.2 0.5 1.1 9.2 0.1 2.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA_16 PF13191.6 gi|312136274|ref|YP_004003611.1| - 0.042 14.2 0.5 1.7 9.0 0.0 2.8 2 1 0 3 3 3 0 AAA ATPase domain Hint PF01079.20 gi|312136274|ref|YP_004003611.1| - 0.13 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Hint module LAGLIDADG_WhiA PF14527.6 gi|312136274|ref|YP_004003611.1| - 0.14 12.3 3.1 2.3 8.3 0.1 3.3 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain tRNA_anti-codon PF01336.25 gi|312136274|ref|YP_004003611.1| - 0.14 12.2 0.4 1.1 9.3 0.1 2.6 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Rrf2 PF02082.20 gi|312136274|ref|YP_004003611.1| - 0.14 12.5 0.8 2 8.8 0.0 3.0 3 0 0 3 3 3 0 Transcriptional regulator DUF1451 PF07295.11 gi|312136274|ref|YP_004003611.1| - 0.15 12.1 0.8 0.54 10.3 0.8 2.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF3987 PF13148.6 gi|312136274|ref|YP_004003611.1| - 0.4 9.7 1.5 2.5 7.0 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3987) Zn-ribbon_8 PF09723.10 gi|312136274|ref|YP_004003611.1| - 1 9.5 5.8 0.39 10.9 2.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|312136275|ref|YP_004003612.1| - 4.2e-39 133.0 0.1 5.2e-39 132.8 0.1 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Elf1 PF05129.13 gi|312136275|ref|YP_004003612.1| - 0.0057 16.7 0.2 0.0099 15.9 0.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-RING_7 PF02591.15 gi|312136275|ref|YP_004003612.1| - 0.025 14.7 1.7 0.42 10.8 0.1 2.6 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|312136275|ref|YP_004003612.1| - 0.057 13.6 0.4 5.1 7.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain KdpC PF02669.15 gi|312136276|ref|YP_004003613.1| - 5.8e-64 215.3 0.0 6.5e-64 215.1 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain E1-E2_ATPase PF00122.20 gi|312136277|ref|YP_004003614.1| - 4.5e-37 127.3 1.5 4.5e-37 127.3 1.5 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|312136277|ref|YP_004003614.1| - 2.3e-32 113.0 1.1 4.1e-32 112.2 1.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|312136277|ref|YP_004003614.1| - 2.1e-06 27.7 3.8 8.9e-05 22.3 1.6 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|312136277|ref|YP_004003614.1| - 0.00046 20.6 0.0 0.0033 17.8 0.0 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Intein_splicing PF14890.6 gi|312136277|ref|YP_004003614.1| - 1.9 8.5 5.1 2.2 8.2 0.2 2.7 2 2 0 2 2 2 0 Intein splicing domain KdpA PF03814.15 gi|312136278|ref|YP_004003615.1| - 1.1e-225 750.1 35.3 1.3e-225 749.8 35.3 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit OTCace PF00185.24 gi|312136279|ref|YP_004003616.1| - 6.2e-65 218.1 0.1 1.1e-64 217.3 0.1 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|312136279|ref|YP_004003616.1| - 1.6e-49 167.7 0.0 2.5e-49 167.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PrpR_N PF06506.11 gi|312136279|ref|YP_004003616.1| - 0.011 15.3 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 0 Propionate catabolism activator OCD_Mu_crystall PF02423.15 gi|312136279|ref|YP_004003616.1| - 0.036 13.0 0.1 0.06 12.3 0.1 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Tfb2_C PF18307.1 gi|312136279|ref|YP_004003616.1| - 0.049 14.1 0.0 0.23 11.9 0.0 2.1 2 0 0 2 2 2 0 Transcription factor Tfb2 (p52) C-terminal domain RNase_H PF00075.24 gi|312136279|ref|YP_004003616.1| - 0.1 12.8 0.4 0.21 11.8 0.4 1.5 1 0 0 1 1 1 0 RNase H PepSY PF03413.19 gi|312136279|ref|YP_004003616.1| - 0.22 12.1 1.5 2.5 8.7 0.1 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain GARS_A PF01071.19 gi|312136280|ref|YP_004003617.1| - 6.2e-64 215.4 0.1 1.2e-63 214.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|312136280|ref|YP_004003617.1| - 2.2e-24 86.0 0.2 3.9e-24 85.3 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|312136280|ref|YP_004003617.1| - 6.6e-13 48.8 0.1 3.5e-12 46.4 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|312136280|ref|YP_004003617.1| - 0.0024 18.0 0.0 0.0056 16.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|312136280|ref|YP_004003617.1| - 0.0035 16.9 0.0 0.02 14.5 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|312136280|ref|YP_004003617.1| - 0.012 15.2 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|312136280|ref|YP_004003617.1| - 0.023 14.0 0.1 0.039 13.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp TPP_enzyme_N PF02776.18 gi|312136281|ref|YP_004003618.1| - 5.2e-60 202.0 0.0 3.3e-56 189.6 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|312136281|ref|YP_004003618.1| - 2.8e-50 169.6 0.1 5.5e-50 168.7 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|312136281|ref|YP_004003618.1| - 2.4e-49 167.0 0.0 1.5e-48 164.5 0.0 2.3 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALS_ss_C PF10369.9 gi|312136282|ref|YP_004003619.1| - 9.6e-33 112.2 0.1 7.6e-32 109.3 0.0 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|312136282|ref|YP_004003619.1| - 2.1e-19 69.1 0.5 7.3e-19 67.4 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|312136282|ref|YP_004003619.1| - 6e-16 57.9 0.1 1.6e-15 56.6 0.1 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|312136282|ref|YP_004003619.1| - 5.7e-05 23.6 0.2 0.00011 22.7 0.2 1.4 1 0 0 1 1 1 1 ACT domain NIL PF09383.10 gi|312136282|ref|YP_004003619.1| - 0.019 14.8 0.1 1.7 8.6 0.0 2.5 2 1 0 2 2 2 0 NIL domain Saccharop_dh_N PF04455.12 gi|312136282|ref|YP_004003619.1| - 0.031 14.7 0.2 0.19 12.2 0.1 2.1 1 1 2 3 3 3 0 LOR/SDH bifunctional enzyme conserved region SLS PF14611.6 gi|312136282|ref|YP_004003619.1| - 0.036 13.9 0.2 0.068 13.0 0.2 1.5 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator YbbR PF07949.12 gi|312136282|ref|YP_004003619.1| - 0.053 13.9 4.3 1.3 9.4 0.3 2.3 1 1 1 2 2 2 0 YbbR-like protein HMA PF00403.26 gi|312136282|ref|YP_004003619.1| - 0.057 13.9 0.6 0.27 11.7 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain Alkyl_sulf_C PF14864.6 gi|312136282|ref|YP_004003619.1| - 0.076 13.3 0.0 5 7.4 0.0 2.2 2 0 0 2 2 2 0 Alkyl sulfatase C-terminal ACT_6 PF13740.6 gi|312136282|ref|YP_004003619.1| - 0.11 12.5 0.1 1.5 8.8 0.0 2.6 2 1 0 2 2 2 0 ACT domain Acylphosphatase PF00708.18 gi|312136282|ref|YP_004003619.1| - 0.16 12.4 0.1 16 6.0 0.0 2.3 2 0 0 2 2 2 0 Acylphosphatase IlvN PF07991.12 gi|312136283|ref|YP_004003620.1| - 1.2e-72 242.9 0.5 1.7e-72 242.3 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|312136283|ref|YP_004003620.1| - 9.3e-64 214.1 0.8 1.5e-63 213.4 0.8 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|312136283|ref|YP_004003620.1| - 6.8e-08 33.0 0.0 1.7e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|312136283|ref|YP_004003620.1| - 2.8e-06 26.8 0.1 5e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|312136283|ref|YP_004003620.1| - 5.7e-06 26.6 0.0 1.5e-05 25.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|312136283|ref|YP_004003620.1| - 6.1e-05 23.1 0.1 0.00017 21.7 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 gi|312136283|ref|YP_004003620.1| - 0.0078 16.9 0.1 0.057 14.1 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain Shikimate_DH PF01488.20 gi|312136283|ref|YP_004003620.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CoA_binding_2 PF13380.6 gi|312136283|ref|YP_004003620.1| - 0.064 13.8 0.3 0.46 11.0 0.0 2.4 3 0 0 3 3 3 0 CoA binding domain ApbA PF02558.16 gi|312136283|ref|YP_004003620.1| - 0.084 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|312136283|ref|YP_004003620.1| - 0.087 13.3 0.3 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF1464 PF07318.12 gi|312136284|ref|YP_004003621.1| - 4.6e-07 29.3 0.7 5.9e-07 28.9 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) ROK PF00480.20 gi|312136284|ref|YP_004003621.1| - 0.036 13.5 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 ROK family LSM PF01423.22 gi|312136285|ref|YP_004003622.1| - 1.5e-09 37.4 1.2 3.3e-08 33.1 1.2 2.0 1 1 0 1 1 1 1 LSM domain Hfq PF17209.3 gi|312136285|ref|YP_004003622.1| - 0.02 14.5 0.2 0.023 14.3 0.2 1.1 1 0 0 1 1 1 0 Hfq protein NAS PF03059.16 gi|312136286|ref|YP_004003623.1| - 3.3e-27 95.5 0.7 3.8e-27 95.3 0.7 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_31 PF13847.6 gi|312136286|ref|YP_004003623.1| - 5.1e-05 23.1 0.0 8.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|312136286|ref|YP_004003623.1| - 0.00031 20.6 0.0 0.00045 20.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|312136286|ref|YP_004003623.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2610 PF11020.8 gi|312136286|ref|YP_004003623.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) Methyltransf_25 PF13649.6 gi|312136286|ref|YP_004003623.1| - 0.091 13.5 0.0 0.19 12.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF3194 PF11419.8 gi|312136287|ref|YP_004003624.1| - 1.8e-30 105.1 3.6 2.3e-30 104.8 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Ribosomal_S30AE PF02482.19 gi|312136287|ref|YP_004003624.1| - 0.015 16.0 1.1 0.02 15.7 1.1 1.3 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein ABC-3 PF00950.17 gi|312136288|ref|YP_004003625.1| - 1.1e-76 257.7 35.3 1.3e-76 257.6 35.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|312136288|ref|YP_004003625.1| - 0.00024 20.2 34.8 0.00048 19.2 34.8 1.6 1 1 0 1 1 1 1 FecCD transport family DUF1240 PF06836.12 gi|312136288|ref|YP_004003625.1| - 5 7.7 11.1 0.47 11.0 3.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1240) ABC_tran PF00005.27 gi|312136289|ref|YP_004003626.1| - 7.6e-31 107.5 0.0 1.2e-30 106.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136289|ref|YP_004003626.1| - 2.2e-12 47.4 1.3 9.7e-06 25.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312136289|ref|YP_004003626.1| - 6.6e-06 25.7 0.1 0.12 11.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|312136289|ref|YP_004003626.1| - 0.00073 19.4 0.6 0.014 15.1 0.5 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|312136289|ref|YP_004003626.1| - 0.0025 18.3 0.8 0.0054 17.3 0.8 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|312136289|ref|YP_004003626.1| - 0.0057 16.9 0.1 0.085 13.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|312136289|ref|YP_004003626.1| - 0.0069 15.5 0.0 0.059 12.4 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|312136289|ref|YP_004003626.1| - 0.0091 15.7 0.0 0.04 13.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|312136289|ref|YP_004003626.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|312136289|ref|YP_004003626.1| - 0.019 14.7 0.2 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|312136289|ref|YP_004003626.1| - 0.039 13.6 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|312136289|ref|YP_004003626.1| - 0.045 13.7 0.5 0.11 12.4 0.1 1.8 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|312136289|ref|YP_004003626.1| - 0.078 13.3 0.1 0.42 10.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|312136289|ref|YP_004003626.1| - 0.08 13.0 0.1 2.8 8.0 0.1 2.4 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|312136289|ref|YP_004003626.1| - 0.11 12.4 0.6 0.24 11.3 0.2 1.7 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.7 gi|312136289|ref|YP_004003626.1| - 0.11 11.3 0.3 0.25 10.2 0.1 1.7 2 1 1 3 3 3 0 AAA-like domain AAA_18 PF13238.6 gi|312136289|ref|YP_004003626.1| - 0.12 12.9 0.3 0.91 10.1 0.3 2.3 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|312136289|ref|YP_004003626.1| - 0.15 11.3 0.9 0.66 9.1 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|312136289|ref|YP_004003626.1| - 0.18 12.2 2.2 1.7 9.0 2.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|312136289|ref|YP_004003626.1| - 0.18 11.2 0.0 0.35 10.3 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ZnuA PF01297.17 gi|312136290|ref|YP_004003627.1| - 4.7e-66 222.8 0.4 5.4e-66 222.6 0.4 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic malic PF00390.19 gi|312136290|ref|YP_004003627.1| - 0.039 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Malic enzyme, N-terminal domain NikR_C PF08753.11 gi|312136291|ref|YP_004003628.1| - 2.9e-14 53.0 0.8 5.4e-14 52.1 0.6 1.5 1 1 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|312136291|ref|YP_004003628.1| - 1.5e-06 27.9 0.3 5.6e-06 26.1 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family OSCP PF00213.18 gi|312136291|ref|YP_004003628.1| - 0.0029 17.7 1.5 0.4 10.8 0.2 2.1 1 1 1 2 2 2 2 ATP synthase delta (OSCP) subunit RHH_8 PF17723.1 gi|312136291|ref|YP_004003628.1| - 0.0047 17.1 0.1 0.0084 16.3 0.1 1.5 1 1 1 2 2 2 1 Ribbon-Helix-Helix transcriptional regulator family Yip1 PF04893.17 gi|312136293|ref|YP_004003630.1| - 3.9e-15 56.0 26.1 4.8e-15 55.7 26.1 1.1 1 0 0 1 1 1 1 Yip1 domain eRF1_1 PF03463.15 gi|312136294|ref|YP_004003631.1| - 8.1e-35 119.6 0.7 1.5e-34 118.8 0.7 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|312136294|ref|YP_004003631.1| - 1.1e-22 80.7 1.0 9.2e-22 77.7 0.4 2.6 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|312136294|ref|YP_004003631.1| - 2.9e-18 66.5 0.2 8.1e-18 65.0 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 SpoU_sub_bind PF08032.12 gi|312136294|ref|YP_004003631.1| - 0.52 10.6 4.3 0.39 11.0 0.2 2.8 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding CBP_BcsF PF11120.8 gi|312136295|ref|YP_004003632.1| - 0.4 10.8 5.5 16 5.7 0.1 3.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Glyco_transf_28 PF03033.20 gi|312136296|ref|YP_004003633.1| - 4e-08 33.4 1.8 1.8e-07 31.3 0.9 2.3 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.6 gi|312136296|ref|YP_004003633.1| - 3.4e-05 24.3 0.0 7.1e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|312136296|ref|YP_004003633.1| - 6.8e-05 22.9 0.2 0.00029 20.9 0.1 2.0 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|312136296|ref|YP_004003633.1| - 0.001 18.6 1.0 0.0015 18.1 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312136296|ref|YP_004003633.1| - 0.011 15.7 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Peptidase_M28 PF04389.17 gi|312136297|ref|YP_004003634.1| - 2.7e-28 99.0 0.0 4.7e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|312136297|ref|YP_004003634.1| - 1.2e-05 25.1 0.0 2.8e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_S77 PF03420.13 gi|312136297|ref|YP_004003634.1| - 0.044 13.4 0.0 0.092 12.4 0.0 1.5 1 0 0 1 1 1 0 Prohead core protein serine protease His_biosynth PF00977.21 gi|312136298|ref|YP_004003635.1| - 6.7e-87 290.7 0.3 7.8e-87 290.5 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|312136298|ref|YP_004003635.1| - 4.6e-11 42.5 0.2 3.2e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|312136298|ref|YP_004003635.1| - 8.8e-11 41.8 0.1 2.1e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|312136298|ref|YP_004003635.1| - 2e-08 33.7 0.3 3.5e-05 23.1 0.1 2.1 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|312136298|ref|YP_004003635.1| - 1.1e-07 31.4 0.0 0.00028 20.2 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|312136298|ref|YP_004003635.1| - 9.9e-07 28.3 0.3 0.0064 15.9 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|312136298|ref|YP_004003635.1| - 1.5e-06 27.5 0.3 0.018 14.0 0.1 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|312136298|ref|YP_004003635.1| - 3.7e-05 23.1 0.4 0.11 11.8 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase DUF561 PF04481.12 gi|312136298|ref|YP_004003635.1| - 0.00054 19.2 1.0 0.54 9.4 0.1 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|312136298|ref|YP_004003635.1| - 0.00079 18.5 0.1 0.41 9.6 0.0 2.3 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|312136298|ref|YP_004003635.1| - 0.022 13.6 0.6 0.096 11.5 0.2 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain OGG_N PF07934.12 gi|312136299|ref|YP_004003636.1| - 4.6e-13 49.3 1.0 7.8e-13 48.6 1.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|312136299|ref|YP_004003636.1| - 8.8e-13 48.7 0.0 1.5e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|312136299|ref|YP_004003636.1| - 2.3e-06 27.2 0.0 4.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF3719 PF12516.8 gi|312136299|ref|YP_004003636.1| - 0.0097 15.6 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3719) HHH_5 PF14520.6 gi|312136299|ref|YP_004003636.1| - 0.018 15.6 0.0 0.034 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF3794 PF12673.7 gi|312136299|ref|YP_004003636.1| - 0.046 14.0 0.7 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3794) HHH_2 PF12826.7 gi|312136299|ref|YP_004003636.1| - 0.2 11.8 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Rsbr_N PF08678.10 gi|312136300|ref|YP_004003637.1| - 0.1 12.7 2.1 0.2 11.7 0.9 2.1 1 1 2 3 3 3 0 Rsbr N terminal MtrA PF04208.14 gi|312136301|ref|YP_004003638.1| - 1.1e-85 285.5 1.4 1.3e-85 285.4 1.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Ribosomal_L18_c PF14204.6 gi|312136301|ref|YP_004003638.1| - 0.086 13.8 0.5 0.2 12.6 0.5 1.6 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region DUF5388 PF17363.2 gi|312136301|ref|YP_004003638.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5388) GatB_Yqey PF02637.18 gi|312136301|ref|YP_004003638.1| - 0.13 12.1 3.4 1.9 8.4 1.1 2.1 1 1 1 2 2 2 0 GatB domain Radical_SAM PF04055.21 gi|312136302|ref|YP_004003639.1| - 1.9e-22 80.4 0.0 5.2e-22 79.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136302|ref|YP_004003639.1| - 2e-10 41.1 0.1 7.6e-09 36.0 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312136302|ref|YP_004003639.1| - 9.6e-09 35.4 0.1 4.1e-08 33.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain AMP-binding PF00501.28 gi|312136303|ref|YP_004003640.1| - 2.6e-96 322.8 0.0 3.1e-96 322.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|312136303|ref|YP_004003640.1| - 4.2e-26 91.7 0.7 4.2e-26 91.7 0.7 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|312136303|ref|YP_004003640.1| - 3.5e-16 58.9 7.6 8.6e-16 57.6 7.6 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Cpn60_TCP1 PF00118.24 gi|312136304|ref|YP_004003641.1| - 1.7e-185 617.3 21.9 2e-185 617.1 21.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.16 gi|312136304|ref|YP_004003641.1| - 0.051 14.2 0.2 2.6 8.7 0.0 3.0 3 0 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CinA_KH PF18146.1 gi|312136304|ref|YP_004003641.1| - 0.38 10.9 5.1 46 4.3 0.0 4.3 3 1 1 4 4 4 0 Damage-inducible protein CinA KH domain Ribosomal_S13 PF00416.22 gi|312136304|ref|YP_004003641.1| - 2.9 8.3 6.9 15 6.0 0.3 3.1 2 1 1 3 3 3 0 Ribosomal protein S13/S18 Zn_protease PF05618.11 gi|312136305|ref|YP_004003642.1| - 8.4e-21 74.3 0.1 3e-20 72.5 0.1 1.8 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.21 gi|312136305|ref|YP_004003642.1| - 0.0012 18.5 0.1 0.0047 16.6 0.1 1.8 1 1 0 1 1 1 1 Polypeptide deformylase YjhX_toxin PF09857.9 gi|312136305|ref|YP_004003642.1| - 0.13 12.2 0.1 7.2 6.6 0.0 2.5 1 1 1 2 2 2 0 Putative toxin of bacterial toxin-antitoxin pair DUF1611 PF07755.11 gi|312136306|ref|YP_004003643.1| - 0.069 12.4 0.0 0.27 10.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain ILVD_EDD PF00920.21 gi|312136307|ref|YP_004003644.1| - 3.5e-227 755.1 2.4 4e-227 754.9 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family Peptidase_S24 PF00717.23 gi|312136308|ref|YP_004003645.1| - 5.5e-10 39.1 0.1 1.1e-09 38.1 0.0 1.6 1 1 1 2 2 2 1 Peptidase S24-like Flavoprotein PF02441.19 gi|312136308|ref|YP_004003645.1| - 0.073 12.8 0.0 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 Flavoprotein Pilt PF15453.6 gi|312136308|ref|YP_004003645.1| - 0.58 9.5 1.2 0.72 9.2 1.2 1.1 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions tRNA-synt_1d PF00750.19 gi|312136309|ref|YP_004003646.1| - 1.1e-46 159.5 7.3 1.6e-46 158.9 7.3 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|312136309|ref|YP_004003646.1| - 9.4e-34 116.1 0.7 4.4e-33 114.0 0.7 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|312136309|ref|YP_004003646.1| - 5.6e-20 71.7 3.7 6.9e-20 71.4 0.2 3.0 3 1 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|312136309|ref|YP_004003646.1| - 6.4e-12 45.1 5.4 6.3e-06 25.3 0.1 3.7 3 1 1 4 4 4 3 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|312136309|ref|YP_004003646.1| - 1.1e-07 31.0 7.3 0.0075 15.1 0.1 4.3 4 0 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|312136309|ref|YP_004003646.1| - 8.1e-06 25.4 2.5 1.3e-05 24.8 0.9 2.2 2 1 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|312136309|ref|YP_004003646.1| - 0.00043 18.7 0.2 0.0011 17.3 0.1 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) PARP_reg PF02877.14 gi|312136309|ref|YP_004003646.1| - 0.00098 19.2 2.7 0.0036 17.4 0.2 2.8 3 0 0 3 3 3 1 Poly(ADP-ribose) polymerase, regulatory domain Nucleolin_bd PF16725.5 gi|312136309|ref|YP_004003646.1| - 0.057 13.1 0.1 0.27 10.9 0.1 2.2 2 0 0 2 2 2 0 Nucleolin binding domain FeoB_Cyto PF17910.1 gi|312136309|ref|YP_004003646.1| - 2.5 8.7 8.8 1.2 9.7 2.7 3.3 2 1 1 3 3 3 0 FeoB cytosolic helical domain Zn_ribbon_2 PF12674.7 gi|312136309|ref|YP_004003646.1| - 3.4 8.4 4.5 14 6.4 0.1 3.6 4 0 0 4 4 3 0 Putative zinc ribbon domain Cpn60_TCP1 PF00118.24 gi|312136310|ref|YP_004003647.1| - 2.5e-188 626.7 23.1 2.8e-188 626.5 23.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.16 gi|312136310|ref|YP_004003647.1| - 0.0086 16.7 0.3 2.7 8.7 0.0 3.1 3 0 0 3 3 3 2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thiolase_N PF00108.23 gi|312136311|ref|YP_004003648.1| - 9.5e-32 110.4 0.6 1.5e-31 109.8 0.1 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|312136311|ref|YP_004003648.1| - 3.9e-13 49.1 1.8 2.7e-12 46.4 1.0 2.6 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|312136311|ref|YP_004003648.1| - 5.6e-07 29.4 2.7 5e-06 26.3 2.2 2.6 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|312136311|ref|YP_004003648.1| - 5.7e-05 23.1 2.1 0.024 14.7 0.0 3.0 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|312136311|ref|YP_004003648.1| - 0.0002 21.1 0.3 0.081 12.8 0.3 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|312136312|ref|YP_004003649.1| - 3.1e-13 49.7 0.0 6.8e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|312136312|ref|YP_004003649.1| - 8.6e-07 28.9 0.1 6.3e-06 26.0 0.0 1.9 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|312136312|ref|YP_004003649.1| - 2.1e-05 24.0 0.4 3.4e-05 23.3 0.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|312136312|ref|YP_004003649.1| - 0.00017 21.5 0.4 0.00023 21.1 0.4 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|312136312|ref|YP_004003649.1| - 0.031 14.1 2.8 0.07 13.0 1.7 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Radical_SAM PF04055.21 gi|312136313|ref|YP_004003650.1| - 1.7e-12 48.1 0.1 3.8e-12 46.9 0.1 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Csm2_III-A PF03750.13 gi|312136313|ref|YP_004003650.1| - 0.00099 19.9 1.2 0.074 13.9 0.2 2.9 1 1 0 2 2 2 1 Csm2 Type III-A Fer4_14 PF13394.6 gi|312136313|ref|YP_004003650.1| - 0.0035 17.5 0.1 0.0089 16.1 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|312136313|ref|YP_004003650.1| - 0.0067 16.7 0.1 0.014 15.7 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain PBECR3 PF18812.1 gi|312136313|ref|YP_004003650.1| - 0.13 12.2 2.9 0.37 10.8 2.9 1.9 1 1 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 FAD_binding_2 PF00890.24 gi|312136314|ref|YP_004003651.1| - 5.5e-103 345.3 0.3 6.9e-103 344.9 0.3 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|312136314|ref|YP_004003651.1| - 1.2e-31 109.3 0.1 2.3e-31 108.5 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|312136314|ref|YP_004003651.1| - 1.9e-12 47.0 0.2 3.4e-06 26.5 0.0 2.9 2 2 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|312136314|ref|YP_004003651.1| - 1.5e-05 23.9 2.1 0.19 10.4 0.2 3.3 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.17 gi|312136314|ref|YP_004003651.1| - 0.0011 18.3 5.0 0.0052 16.1 0.4 3.0 3 0 0 3 3 3 1 Thi4 family DAO PF01266.24 gi|312136314|ref|YP_004003651.1| - 0.0022 17.7 0.8 0.027 14.1 0.8 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|312136314|ref|YP_004003651.1| - 0.0025 17.1 0.1 0.0043 16.4 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|312136314|ref|YP_004003651.1| - 0.0067 15.6 8.0 0.041 13.0 0.2 3.4 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|312136314|ref|YP_004003651.1| - 0.037 13.4 0.6 0.11 11.9 0.3 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|312136314|ref|YP_004003651.1| - 0.09 12.0 2.6 0.21 10.8 0.3 2.6 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|312136314|ref|YP_004003651.1| - 0.17 10.9 0.2 0.32 10.0 0.2 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein OMPdecase PF00215.24 gi|312136315|ref|YP_004003652.1| - 1e-36 126.6 0.1 1.3e-36 126.3 0.1 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.17 gi|312136315|ref|YP_004003652.1| - 9.1e-05 22.0 0.2 0.13 11.7 0.0 2.3 2 0 0 2 2 2 2 PcrB family DS PF01916.17 gi|312136317|ref|YP_004003654.1| - 2.7e-99 332.1 0.1 3e-99 331.9 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase HrcA_DNA-bdg PF03444.15 gi|312136318|ref|YP_004003655.1| - 6.7e-36 121.8 0.3 6.7e-36 121.8 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|312136318|ref|YP_004003655.1| - 4e-29 100.8 5.7 3.6e-16 59.3 0.9 2.6 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|312136318|ref|YP_004003655.1| - 1.3e-08 35.1 0.2 3.7e-08 33.6 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|312136318|ref|YP_004003655.1| - 2e-08 34.1 0.3 7e-08 32.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|312136318|ref|YP_004003655.1| - 0.0014 18.1 0.2 0.0078 15.8 0.4 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|312136318|ref|YP_004003655.1| - 0.0024 17.7 0.1 0.14 12.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|312136318|ref|YP_004003655.1| - 0.0063 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|312136318|ref|YP_004003655.1| - 0.019 14.8 0.0 0.052 13.4 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|312136318|ref|YP_004003655.1| - 0.045 13.5 0.1 0.091 12.5 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|312136318|ref|YP_004003655.1| - 0.078 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FeS_assembly_P PF01883.19 gi|312136319|ref|YP_004003656.1| - 9.5e-19 67.4 1.1 1.1e-18 67.1 1.1 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF4580 PF15162.6 gi|312136319|ref|YP_004003656.1| - 0.0075 15.9 0.6 0.0098 15.5 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4580) Spore_YhcN_YlaJ PF09580.10 gi|312136319|ref|YP_004003656.1| - 0.0087 16.2 1.3 0.019 15.1 0.3 1.9 1 1 1 2 2 2 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AAA_17 PF13207.6 gi|312136320|ref|YP_004003657.1| - 5.7e-22 78.6 0.0 8.4e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|312136320|ref|YP_004003657.1| - 1.6e-07 31.9 0.0 2.7e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|312136320|ref|YP_004003657.1| - 3.8e-05 24.1 0.2 0.00012 22.5 0.0 2.0 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|312136320|ref|YP_004003657.1| - 0.00017 21.7 0.0 0.00045 20.3 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase NB-ARC PF00931.22 gi|312136320|ref|YP_004003657.1| - 0.00058 19.1 0.0 0.0011 18.2 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain NTPase_1 PF03266.15 gi|312136320|ref|YP_004003657.1| - 0.0009 19.2 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 NTPase Cytidylate_kin2 PF13189.6 gi|312136320|ref|YP_004003657.1| - 0.0039 17.3 0.0 0.006 16.7 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase-like family ABC_tran PF00005.27 gi|312136320|ref|YP_004003657.1| - 0.0072 16.9 0.1 0.068 13.7 0.0 2.1 2 0 0 2 2 2 1 ABC transporter Cytidylate_kin PF02224.18 gi|312136320|ref|YP_004003657.1| - 0.014 15.2 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase ATP_bind_1 PF03029.17 gi|312136320|ref|YP_004003657.1| - 0.015 15.1 0.1 0.035 13.9 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|312136320|ref|YP_004003657.1| - 0.016 15.4 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|312136320|ref|YP_004003657.1| - 0.017 15.2 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase AAA_7 PF12775.7 gi|312136320|ref|YP_004003657.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|312136320|ref|YP_004003657.1| - 0.028 14.8 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|312136320|ref|YP_004003657.1| - 0.029 14.0 2.5 0.033 13.8 0.3 2.1 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain 6PF2K PF01591.18 gi|312136320|ref|YP_004003657.1| - 0.029 13.7 0.3 0.058 12.7 0.0 1.6 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_33 PF13671.6 gi|312136320|ref|YP_004003657.1| - 0.031 14.4 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|312136320|ref|YP_004003657.1| - 0.044 13.5 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|312136320|ref|YP_004003657.1| - 0.047 13.7 0.2 0.097 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|312136320|ref|YP_004003657.1| - 0.054 13.2 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|312136320|ref|YP_004003657.1| - 0.065 13.5 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|312136320|ref|YP_004003657.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|312136320|ref|YP_004003657.1| - 0.096 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|312136320|ref|YP_004003657.1| - 0.099 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|312136320|ref|YP_004003657.1| - 0.099 12.7 2.0 0.22 11.6 2.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Glycos_transf_3 PF00591.21 gi|312136321|ref|YP_004003658.1| - 1.1e-87 293.8 0.1 6.1e-87 291.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|312136321|ref|YP_004003658.1| - 2.8e-18 65.5 0.1 5.9e-18 64.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF148 PF02520.17 gi|312136321|ref|YP_004003658.1| - 0.041 14.0 0.0 12 6.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF148 YqaH PF17448.2 gi|312136321|ref|YP_004003658.1| - 0.054 13.8 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized YqaH-like Trp_syntA PF00290.20 gi|312136322|ref|YP_004003659.1| - 5.4e-89 297.5 0.1 6.5e-89 297.2 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|312136322|ref|YP_004003659.1| - 9.8e-08 31.7 0.1 4.5e-07 29.6 0.0 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|312136322|ref|YP_004003659.1| - 4.2e-05 23.1 0.3 0.00069 19.1 0.0 2.3 1 1 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.14 gi|312136322|ref|YP_004003659.1| - 0.00091 18.6 0.1 0.064 12.6 0.0 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG BtpA PF03437.15 gi|312136322|ref|YP_004003659.1| - 0.0089 15.5 0.4 0.082 12.3 0.4 2.2 1 1 0 1 1 1 1 BtpA family NanE PF04131.14 gi|312136322|ref|YP_004003659.1| - 0.011 15.0 0.1 0.037 13.2 0.1 2.0 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|312136322|ref|YP_004003659.1| - 0.06 12.5 0.0 6.3 5.9 0.0 2.5 1 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase HMGL-like PF00682.19 gi|312136322|ref|YP_004003659.1| - 0.1 12.2 0.0 0.48 9.9 0.0 2.2 1 1 0 1 1 1 0 HMGL-like PALP PF00291.25 gi|312136323|ref|YP_004003660.1| - 4.2e-45 154.4 0.1 5.1e-45 154.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PRAI PF00697.22 gi|312136324|ref|YP_004003661.1| - 1e-28 100.4 0.3 1.2e-28 100.2 0.3 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ZnuA PF01297.17 gi|312136324|ref|YP_004003661.1| - 0.0017 17.9 0.2 0.0076 15.7 0.0 2.0 2 1 1 3 3 3 1 Zinc-uptake complex component A periplasmic Ribul_P_3_epim PF00834.19 gi|312136324|ref|YP_004003661.1| - 0.0027 17.1 0.1 0.0049 16.3 0.1 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PriX PF18689.1 gi|312136324|ref|YP_004003661.1| - 0.0084 16.4 0.8 0.02 15.2 0.8 1.7 1 0 0 1 1 1 1 Primase X IGPS PF00218.21 gi|312136325|ref|YP_004003662.1| - 1.9e-76 256.6 0.0 2.2e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|312136325|ref|YP_004003662.1| - 4e-06 26.7 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|312136325|ref|YP_004003662.1| - 0.00084 18.5 0.0 0.0017 17.5 0.0 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|312136325|ref|YP_004003662.1| - 0.0032 16.9 0.0 0.0092 15.5 0.0 1.6 1 1 1 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|312136325|ref|YP_004003662.1| - 0.0033 16.7 0.1 0.017 14.3 0.0 2.2 2 2 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|312136325|ref|YP_004003662.1| - 0.0091 15.3 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG ABC_sub_bind PF04392.12 gi|312136325|ref|YP_004003662.1| - 0.015 14.6 0.1 0.029 13.6 0.1 1.4 1 0 0 1 1 1 0 ABC transporter substrate binding protein GATase PF00117.28 gi|312136326|ref|YP_004003663.1| - 1.3e-49 168.6 0.3 1.5e-49 168.4 0.3 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|312136326|ref|YP_004003663.1| - 5.1e-10 39.5 0.0 7.9e-09 35.6 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|312136327|ref|YP_004003664.1| - 4.4e-94 314.9 0.0 9.6e-94 313.7 0.0 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|312136327|ref|YP_004003664.1| - 1.9e-23 83.2 1.0 1.5e-21 77.1 0.4 3.1 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region ACT PF01842.25 gi|312136328|ref|YP_004003665.1| - 8.5e-05 22.3 0.0 0.00022 20.9 0.0 1.8 2 0 0 2 2 2 1 ACT domain HU-CCDC81_euk_2 PF18289.1 gi|312136328|ref|YP_004003665.1| - 0.00039 20.5 0.0 0.00068 19.7 0.0 1.3 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 ACT_7 PF13840.6 gi|312136328|ref|YP_004003665.1| - 0.0042 16.8 0.1 0.0079 16.0 0.1 1.4 1 0 0 1 1 1 1 ACT domain HTH_AsnC-type PF13404.6 gi|312136328|ref|YP_004003665.1| - 0.0096 15.7 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|312136328|ref|YP_004003665.1| - 0.01 15.4 0.0 0.027 14.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|312136328|ref|YP_004003665.1| - 0.054 13.4 0.4 0.17 11.9 0.1 2.0 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|312136328|ref|YP_004003665.1| - 0.074 12.9 0.2 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|312136328|ref|YP_004003665.1| - 0.08 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ACT_4 PF13291.6 gi|312136328|ref|YP_004003665.1| - 0.083 13.5 0.1 0.25 12.0 0.1 1.9 1 1 0 1 1 1 0 ACT domain Alba PF01918.21 gi|312136329|ref|YP_004003666.1| - 1.2e-22 79.5 0.6 2e-22 78.8 0.6 1.4 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|312136329|ref|YP_004003666.1| - 0.019 14.9 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P PYST-C1 PF09690.10 gi|312136329|ref|YP_004003666.1| - 0.054 13.3 0.6 0.11 12.2 0.6 1.7 1 1 0 1 1 1 0 Plasmodium yoelii subtelomeric region (PYST-C1) Topoisom_bac PF01131.20 gi|312136330|ref|YP_004003667.1| - 7.9e-84 282.0 9.0 7.9e-84 282.0 9.0 4.9 5 1 0 5 5 5 1 DNA topoisomerase Toprim PF01751.22 gi|312136330|ref|YP_004003667.1| - 6.5e-25 87.4 0.0 6.5e-25 87.4 0.0 4.1 5 0 0 5 5 4 1 Toprim domain DEAD PF00270.29 gi|312136330|ref|YP_004003667.1| - 3.7e-17 62.6 0.3 5.6e-14 52.3 0.0 3.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|312136330|ref|YP_004003667.1| - 4.6e-09 36.5 3.9 4.6e-09 36.5 3.9 2.9 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|312136330|ref|YP_004003667.1| - 1.9e-07 30.3 2.2 1.9e-07 30.3 2.2 1.9 2 0 0 2 2 2 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|312136330|ref|YP_004003667.1| - 8.2e-07 29.4 8.6 0.017 15.5 0.5 4.5 5 0 0 5 5 3 2 Helicase conserved C-terminal domain HypA PF01155.19 gi|312136330|ref|YP_004003667.1| - 0.00095 19.2 6.7 0.05 13.6 0.0 3.1 3 0 0 3 3 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|312136330|ref|YP_004003667.1| - 0.0037 16.0 0.2 0.016 14.0 0.0 2.2 2 0 0 2 2 2 1 SNF2 family N-terminal domain zf-dskA_traR PF01258.17 gi|312136330|ref|YP_004003667.1| - 0.0045 16.9 3.1 0.018 15.0 0.5 2.5 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.10 gi|312136330|ref|YP_004003667.1| - 0.03 14.4 7.7 0.52 10.5 1.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TackOD1 PF18551.1 gi|312136330|ref|YP_004003667.1| - 0.042 13.5 5.3 0.19 11.4 0.7 2.8 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Toprim_4 PF13662.6 gi|312136330|ref|YP_004003667.1| - 0.074 13.5 0.1 0.97 9.9 0.0 3.0 3 0 0 3 3 2 0 Toprim domain DZR PF12773.7 gi|312136330|ref|YP_004003667.1| - 0.16 12.0 9.8 0.3 11.2 0.6 2.3 2 0 0 2 2 2 0 Double zinc ribbon HTH_IclR PF09339.10 gi|312136330|ref|YP_004003667.1| - 0.23 11.3 0.0 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain DctP PF03480.13 gi|312136330|ref|YP_004003667.1| - 0.4 10.0 7.2 0.037 13.4 0.4 2.7 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein, family 7 Nucleolin_bd PF16725.5 gi|312136330|ref|YP_004003667.1| - 0.55 9.9 2.9 4 7.2 0.3 3.3 3 0 0 3 3 3 0 Nucleolin binding domain zinc_ribbon_2 PF13240.6 gi|312136330|ref|YP_004003667.1| - 0.87 9.4 13.3 0.11 12.3 0.3 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|312136330|ref|YP_004003667.1| - 1.7 8.6 10.4 6.6 6.8 3.2 2.4 2 0 0 2 2 2 0 zinc-ribbons Rhodanese_C PF12368.8 gi|312136330|ref|YP_004003667.1| - 1.8 9.0 7.6 4.3 7.8 2.2 2.3 2 0 0 2 2 2 0 Rhodanase C-terminal zf-ribbon_3 PF13248.6 gi|312136330|ref|YP_004003667.1| - 4.7 6.8 9.8 3.7 7.1 0.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-RING_4 PF14570.6 gi|312136330|ref|YP_004003667.1| - 6 6.7 10.2 0.48 10.3 1.9 2.4 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|312136330|ref|YP_004003667.1| - 9.1 6.3 9.8 20 5.2 0.3 3.8 3 0 0 3 3 3 0 Putative transposase DNA-binding domain HypD PF01924.16 gi|312136331|ref|YP_004003668.1| - 5.4e-150 499.3 2.0 6e-150 499.2 2.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Hydrolase_3 PF08282.12 gi|312136332|ref|YP_004003669.1| - 2.8e-35 122.3 5.8 4.6e-24 85.6 0.7 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|312136332|ref|YP_004003669.1| - 1.7e-10 40.9 0.2 2.7e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|312136332|ref|YP_004003669.1| - 2.8e-07 31.1 3.7 0.0021 18.5 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|312136332|ref|YP_004003669.1| - 6.4e-06 26.6 6.7 0.006 16.9 0.1 3.4 2 1 2 4 4 4 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|312136332|ref|YP_004003669.1| - 0.00023 21.3 3.1 0.021 14.9 3.1 3.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|312136332|ref|YP_004003669.1| - 0.036 14.2 0.5 0.12 12.5 0.1 2.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Cse1 PF08506.10 gi|312136332|ref|YP_004003669.1| - 0.042 12.7 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 Cse1 Hydrolase_like PF13242.6 gi|312136332|ref|YP_004003669.1| - 0.077 13.1 0.2 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like SNO PF01174.19 gi|312136333|ref|YP_004003670.1| - 7.4e-56 189.0 0.5 8.4e-56 188.8 0.5 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|312136333|ref|YP_004003670.1| - 1.7e-09 37.8 0.1 3.9e-09 36.5 0.1 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|312136333|ref|YP_004003670.1| - 2.4e-07 30.6 0.1 3.3e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|312136333|ref|YP_004003670.1| - 0.00099 18.8 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|312136333|ref|YP_004003670.1| - 0.0015 18.3 0.1 0.0024 17.7 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|312136333|ref|YP_004003670.1| - 0.0023 17.7 0.4 0.66 9.7 0.2 2.9 2 1 0 2 2 2 1 Peptidase C26 GAS PF13851.6 gi|312136333|ref|YP_004003670.1| - 0.041 13.2 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Thioredoxin_3 PF13192.6 gi|312136333|ref|YP_004003670.1| - 0.11 12.5 2.0 0.24 11.5 1.0 2.1 2 1 0 2 2 2 0 Thioredoxin domain GXGXG PF01493.19 gi|312136334|ref|YP_004003671.1| - 3e-10 40.0 10.3 1.8e-09 37.4 2.2 2.3 2 0 0 2 2 2 2 GXGXG motif FapA PF03961.13 gi|312136334|ref|YP_004003671.1| - 0.00067 18.4 5.8 0.00067 18.4 5.8 2.2 2 0 0 2 2 2 2 Flagellar Assembly Protein A RnlB_antitoxin PF15933.5 gi|312136334|ref|YP_004003671.1| - 0.047 14.0 0.0 4.9 7.5 0.0 2.3 2 0 0 2 2 2 0 Antitoxin to bacterial toxin RNase LS or RnlA Aromatic_hydrox PF11723.8 gi|312136335|ref|YP_004003672.1| - 0.023 14.2 0.0 0.023 14.2 0.0 1.0 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase Taeniidae_ag PF05596.11 gi|312136335|ref|YP_004003672.1| - 0.1 12.6 2.0 5 7.2 0.3 2.2 1 1 1 2 2 2 0 Taeniidae antigen Metallophos PF00149.28 gi|312136336|ref|YP_004003673.1| - 3.9e-08 34.1 1.3 1.4e-07 32.3 1.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|312136336|ref|YP_004003673.1| - 0.0033 17.6 0.0 0.0047 17.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DEAD_assoc PF08494.11 gi|312136337|ref|YP_004003674.1| - 6.2e-56 189.2 0.0 1.2e-55 188.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|312136337|ref|YP_004003674.1| - 7.5e-32 110.5 1.1 9.7e-31 106.9 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|312136337|ref|YP_004003674.1| - 3.1e-17 62.9 1.8 4.9e-16 59.1 0.1 3.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|312136337|ref|YP_004003674.1| - 3.8e-11 43.3 0.2 2.1e-10 40.9 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|312136337|ref|YP_004003674.1| - 0.0053 15.5 0.0 0.016 13.9 0.0 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|312136337|ref|YP_004003674.1| - 0.0057 17.0 0.0 0.015 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|312136337|ref|YP_004003674.1| - 0.016 14.2 0.4 0.11 11.5 0.1 2.3 3 0 0 3 3 3 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|312136337|ref|YP_004003674.1| - 0.046 13.2 0.1 10 5.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 gi|312136337|ref|YP_004003674.1| - 0.06 13.8 0.1 4.8 7.6 0.1 3.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|312136337|ref|YP_004003674.1| - 0.11 11.9 0.0 0.36 10.3 0.0 1.9 1 0 0 1 1 1 0 PhoH-like protein DUF1424 PF07232.11 gi|312136337|ref|YP_004003674.1| - 0.12 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative rep protein (DUF1424) TrmO PF01980.16 gi|312136338|ref|YP_004003675.1| - 7.4e-32 110.1 0.0 1.2e-31 109.4 0.0 1.3 1 1 0 1 1 1 1 tRNA-methyltransferase O Pyr_redox_2 PF07992.14 gi|312136339|ref|YP_004003676.1| - 1.3e-14 54.1 1.2 0.00031 20.1 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|312136339|ref|YP_004003676.1| - 2.2e-13 50.2 0.9 1.3e-06 27.9 0.0 2.5 3 0 0 3 3 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|312136339|ref|YP_004003676.1| - 4.9e-11 42.4 0.3 0.0017 17.6 0.1 3.2 3 0 0 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|312136339|ref|YP_004003676.1| - 1.7e-10 40.2 0.1 8.4e-06 24.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|312136339|ref|YP_004003676.1| - 1.3e-08 34.9 0.0 0.0053 16.4 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|312136339|ref|YP_004003676.1| - 6.3e-08 32.1 4.2 0.0018 17.4 0.1 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|312136339|ref|YP_004003676.1| - 1.4e-05 25.6 1.0 0.067 13.8 0.3 3.6 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|312136339|ref|YP_004003676.1| - 0.00035 19.9 0.1 0.00035 19.9 0.1 2.2 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.7 gi|312136339|ref|YP_004003676.1| - 0.0005 19.5 0.2 0.38 10.1 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|312136339|ref|YP_004003676.1| - 0.00065 18.9 0.2 0.0023 17.1 0.1 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|312136339|ref|YP_004003676.1| - 0.00077 18.8 0.2 0.013 14.7 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|312136339|ref|YP_004003676.1| - 0.00097 19.3 2.6 0.0015 18.7 0.0 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|312136339|ref|YP_004003676.1| - 0.067 13.5 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Trp_halogenase PF04820.14 gi|312136339|ref|YP_004003676.1| - 0.085 11.7 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NIBRIN_BRCT_II PF16508.5 gi|312136339|ref|YP_004003676.1| - 0.097 13.0 0.1 0.22 11.8 0.1 1.6 1 0 0 1 1 1 0 Second BRCT domain on Nijmegen syndrome breakage protein NAD_binding_9 PF13454.6 gi|312136339|ref|YP_004003676.1| - 0.72 9.8 2.1 0.92 9.5 0.0 2.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding NYN PF01936.18 gi|312136340|ref|YP_004003677.1| - 9.7e-24 84.5 0.0 1.3e-23 84.1 0.0 1.1 1 0 0 1 1 1 1 NYN domain SelA PF03841.13 gi|312136341|ref|YP_004003678.1| - 1e-07 31.3 0.1 1.4e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|312136341|ref|YP_004003678.1| - 0.0031 16.1 0.1 0.014 13.9 0.1 1.9 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|312136341|ref|YP_004003678.1| - 0.0042 16.1 0.0 0.0069 15.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V RTC PF01137.21 gi|312136342|ref|YP_004003679.1| - 4.6e-80 268.0 0.0 5.2e-80 267.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|312136342|ref|YP_004003679.1| - 6.7e-23 81.2 0.0 1.3e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BPL_LplA_LipB PF03099.19 gi|312136343|ref|YP_004003680.1| - 4.4e-21 75.2 0.1 6.5e-21 74.6 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|312136343|ref|YP_004003680.1| - 1.9e-06 27.7 0.1 4.5e-06 26.4 0.1 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|312136343|ref|YP_004003680.1| - 9.2e-06 25.3 0.0 2.1e-05 24.2 0.0 1.5 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family TFIIE_alpha PF02002.17 gi|312136343|ref|YP_004003680.1| - 0.0051 16.6 1.3 0.015 15.1 1.3 1.9 1 0 0 1 1 1 1 TFIIE alpha subunit Mga PF05043.13 gi|312136343|ref|YP_004003680.1| - 0.028 15.0 1.8 0.1 13.2 1.8 1.9 1 0 0 1 1 1 0 Mga helix-turn-helix domain CPSase_L_D2 PF02786.17 gi|312136344|ref|YP_004003681.1| - 1.1e-81 273.3 0.7 1.7e-81 272.8 0.7 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|312136344|ref|YP_004003681.1| - 2.7e-47 159.9 0.8 1.6e-46 157.4 0.1 2.4 3 0 0 3 3 3 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|312136344|ref|YP_004003681.1| - 3.1e-41 139.8 0.0 7.5e-41 138.6 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|312136344|ref|YP_004003681.1| - 3.6e-13 49.5 0.1 8.3e-13 48.3 0.1 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|312136344|ref|YP_004003681.1| - 3.2e-06 27.3 0.2 1.2e-05 25.4 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|312136344|ref|YP_004003681.1| - 4.5e-06 26.4 0.1 8.6e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|312136344|ref|YP_004003681.1| - 0.0011 18.4 0.0 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|312136344|ref|YP_004003681.1| - 0.0062 15.8 0.1 0.014 14.6 0.1 1.6 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|312136344|ref|YP_004003681.1| - 0.033 13.9 0.0 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon DUF2529 PF10740.9 gi|312136344|ref|YP_004003681.1| - 0.11 12.1 0.0 2.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) Chlam_PMP PF02415.17 gi|312136345|ref|YP_004003682.1| - 1.2e-12 47.5 47.4 0.13 12.8 0.4 9.6 10 0 0 10 10 10 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Methyltransf_31 PF13847.6 gi|312136346|ref|YP_004003683.1| - 2.3e-11 43.7 0.1 3.6e-11 43.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|312136346|ref|YP_004003683.1| - 4e-11 42.9 0.2 5.3e-11 42.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|312136346|ref|YP_004003683.1| - 5.3e-10 39.1 0.0 8.5e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|312136346|ref|YP_004003683.1| - 8.6e-08 32.8 0.0 1.7e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|312136346|ref|YP_004003683.1| - 3.9e-06 26.4 0.1 7e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.18 gi|312136346|ref|YP_004003683.1| - 3.2e-05 23.7 0.1 9.5e-05 22.2 0.1 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|312136346|ref|YP_004003683.1| - 0.00013 21.9 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312136346|ref|YP_004003683.1| - 0.00018 22.1 0.0 0.00043 20.9 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|312136346|ref|YP_004003683.1| - 0.00023 21.2 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|312136346|ref|YP_004003683.1| - 0.00058 19.2 0.0 0.00075 18.8 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Cons_hypoth95 PF03602.15 gi|312136346|ref|YP_004003683.1| - 0.00064 19.4 0.0 0.00082 19.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|312136346|ref|YP_004003683.1| - 0.0014 18.0 0.1 0.0022 17.4 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|312136346|ref|YP_004003683.1| - 0.0017 19.1 0.0 0.0039 17.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|312136346|ref|YP_004003683.1| - 0.0026 17.9 0.0 0.0039 17.3 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|312136346|ref|YP_004003683.1| - 0.0053 15.7 0.0 0.0068 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) N6_Mtase PF02384.16 gi|312136346|ref|YP_004003683.1| - 0.0087 15.4 0.0 0.026 13.8 0.0 1.9 1 1 0 1 1 1 1 N-6 DNA Methylase TehB PF03848.14 gi|312136346|ref|YP_004003683.1| - 0.016 14.6 0.1 0.027 13.9 0.1 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|312136346|ref|YP_004003683.1| - 0.048 12.7 0.1 0.086 11.9 0.1 1.5 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|312136346|ref|YP_004003683.1| - 0.098 12.0 0.6 0.14 11.5 0.2 1.5 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G HEAT_2 PF13646.6 gi|312136347|ref|YP_004003684.1| - 2.1e-41 140.2 6.4 5.7e-16 58.7 0.4 2.4 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|312136347|ref|YP_004003684.1| - 3e-21 73.7 0.1 0.00021 21.3 0.0 5.2 5 0 0 5 5 5 4 HEAT repeat HEAT_PBS PF03130.16 gi|312136347|ref|YP_004003684.1| - 9.4e-20 69.2 5.7 1.3e-05 25.4 0.1 5.2 5 0 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|312136347|ref|YP_004003684.1| - 5e-16 58.8 0.6 0.023 15.2 0.0 5.1 5 0 0 5 5 5 4 HEAT-like repeat Arm PF00514.23 gi|312136347|ref|YP_004003684.1| - 8.7e-14 51.0 0.0 0.0072 16.3 0.0 5.0 4 1 1 5 5 5 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|312136347|ref|YP_004003684.1| - 5.7e-11 42.7 0.0 0.0046 17.0 0.0 4.2 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|312136347|ref|YP_004003684.1| - 6.5e-09 34.9 0.0 2.1e-07 29.9 0.0 2.4 1 1 1 2 2 2 1 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|312136347|ref|YP_004003684.1| - 3.5e-05 23.9 0.9 0.21 11.6 0.1 3.4 2 1 1 3 3 3 2 Aconitate B N-terminal domain DNA_alkylation PF08713.11 gi|312136347|ref|YP_004003684.1| - 0.0012 18.6 1.5 0.21 11.2 0.0 2.6 1 1 1 2 2 2 2 DNA alkylation repair enzyme Vac14_Fab1_bd PF12755.7 gi|312136347|ref|YP_004003684.1| - 0.0019 18.7 0.0 3.7 8.2 0.0 4.0 1 1 2 3 3 3 1 Vacuolar 14 Fab1-binding region GUN4_N PF16416.5 gi|312136347|ref|YP_004003684.1| - 0.0073 16.3 0.0 0.96 9.5 0.0 2.3 1 1 1 2 2 2 1 ARM-like repeat domain, GUN4-N terminal RTP1_C1 PF10363.9 gi|312136347|ref|YP_004003684.1| - 0.0094 16.1 0.0 0.31 11.3 0.0 2.8 1 1 1 2 2 2 1 Required for nuclear transport of RNA pol II C-terminus 1 PgpA PF04608.13 gi|312136348|ref|YP_004003685.1| - 4.1e-12 46.3 0.1 6.1e-12 45.8 0.1 1.3 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A IDEAL PF08858.10 gi|312136348|ref|YP_004003685.1| - 0.09 12.5 0.4 0.34 10.7 0.4 2.0 1 0 0 1 1 1 0 IDEAL domain DUF641 PF04859.12 gi|312136348|ref|YP_004003685.1| - 0.15 12.4 0.6 0.71 10.2 0.0 2.1 2 1 0 2 2 2 0 Plant protein of unknown function (DUF641) SRP54_N PF02881.19 gi|312136348|ref|YP_004003685.1| - 1.4 9.2 6.4 2 8.7 0.1 3.1 2 1 0 2 2 2 0 SRP54-type protein, helical bundle domain CobS PF02654.15 gi|312136349|ref|YP_004003686.1| - 1.3e-35 123.4 12.6 1.5e-35 123.3 12.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Trm56 PF01994.16 gi|312136350|ref|YP_004003687.1| - 4e-51 171.9 0.2 5.2e-51 171.6 0.2 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.19 gi|312136350|ref|YP_004003687.1| - 0.0022 18.2 0.0 0.003 17.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Fumerase_C PF05683.12 gi|312136351|ref|YP_004003688.1| - 9.4e-23 80.6 0.2 1.6e-22 79.8 0.2 1.4 1 1 0 1 1 1 1 Fumarase C-terminus GTP_EFTU_D2 PF03144.25 gi|312136351|ref|YP_004003688.1| - 0.11 12.9 0.5 1.8 9.0 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu domain 2 Pyridoxal_deC PF00282.19 gi|312136352|ref|YP_004003689.1| - 7.8e-36 123.6 0.0 3.5e-35 121.4 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|312136352|ref|YP_004003689.1| - 5.5e-15 55.2 0.2 1.5e-12 47.2 0.1 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|312136352|ref|YP_004003689.1| - 7.3e-08 32.1 0.1 1.1e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|312136352|ref|YP_004003689.1| - 1.1e-06 28.1 0.0 4.4e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|312136352|ref|YP_004003689.1| - 8.8e-05 21.9 0.1 0.00038 19.8 0.1 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|312136352|ref|YP_004003689.1| - 0.00014 20.7 0.2 0.00041 19.2 0.2 1.6 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS GDC-P PF02347.16 gi|312136352|ref|YP_004003689.1| - 0.023 13.5 0.1 0.48 9.2 0.0 2.3 2 0 0 2 2 2 0 Glycine cleavage system P-protein Vmethyltransf_C PF08456.10 gi|312136352|ref|YP_004003689.1| - 0.12 11.9 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 Viral methyltransferase C-terminal Aminotran_3 PF00202.21 gi|312136352|ref|YP_004003689.1| - 0.18 10.5 0.7 4.2 5.9 0.0 2.5 2 1 1 3 3 3 0 Aminotransferase class-III PPDK_N PF01326.19 gi|312136353|ref|YP_004003690.1| - 5.4e-123 410.5 2.7 8.8e-123 409.7 2.7 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|312136353|ref|YP_004003690.1| - 2.4e-90 302.6 0.1 4.5e-90 301.7 0.1 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|312136353|ref|YP_004003690.1| - 1.3e-28 98.5 2.1 3.4e-28 97.2 2.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|312136353|ref|YP_004003690.1| - 1.1e-05 25.8 0.5 0.035 14.5 0.0 3.1 1 1 1 2 2 2 2 Radical SAM superfamily Epimerase_2 PF02350.19 gi|312136353|ref|YP_004003690.1| - 0.0004 19.3 0.6 0.0014 17.5 0.2 2.1 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase HpcH_HpaI PF03328.14 gi|312136353|ref|YP_004003690.1| - 0.0034 16.6 0.1 0.011 14.8 0.1 1.9 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ribosomal_L16 PF00252.18 gi|312136354|ref|YP_004003691.1| - 2.9e-36 124.4 1.0 3.5e-36 124.1 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DDE_Tnp_IS240 PF13610.6 gi|312136354|ref|YP_004003691.1| - 0.024 14.9 0.1 0.039 14.2 0.1 1.3 1 0 0 1 1 1 0 DDE domain Radical_SAM PF04055.21 gi|312136355|ref|YP_004003692.1| - 1.8e-23 83.7 0.2 1.2e-22 81.1 0.0 2.1 1 1 2 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136355|ref|YP_004003692.1| - 2.8e-16 60.1 0.1 7.9e-16 58.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312136355|ref|YP_004003692.1| - 4.5e-10 39.7 0.3 2.2e-09 37.5 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain STD1 PF17235.2 gi|312136355|ref|YP_004003692.1| - 0.038 13.6 0.5 0.084 12.5 0.5 1.5 1 0 0 1 1 1 0 STD1/MTH1 Cytochrom_NNT PF03264.14 gi|312136355|ref|YP_004003692.1| - 0.12 12.1 0.1 5.5 6.7 0.0 2.2 2 0 0 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region Aminotran_1_2 PF00155.21 gi|312136356|ref|YP_004003693.1| - 4.5e-62 210.3 0.0 5.1e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|312136356|ref|YP_004003693.1| - 5.6e-09 35.4 0.0 4.3e-07 29.2 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|312136356|ref|YP_004003693.1| - 4.4e-07 28.8 0.0 1.1e-06 27.4 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|312136356|ref|YP_004003693.1| - 1.2e-05 24.8 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|312136356|ref|YP_004003693.1| - 1.7e-05 23.9 0.3 3.3e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Allinase DUF433 PF04255.14 gi|312136356|ref|YP_004003693.1| - 0.014 15.3 0.0 7 6.6 0.0 4.5 6 0 0 6 6 6 0 Protein of unknown function (DUF433) IF2_N PF04760.15 gi|312136356|ref|YP_004003693.1| - 0.024 14.4 3.4 0.59 10.0 0.1 3.7 5 0 0 5 5 5 0 Translation initiation factor IF-2, N-terminal region Aminotran_3 PF00202.21 gi|312136356|ref|YP_004003693.1| - 0.025 13.3 0.0 0.041 12.5 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III HTH_36 PF13730.6 gi|312136356|ref|YP_004003693.1| - 0.031 14.2 0.1 3.3 7.7 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain FRD2 PF03197.13 gi|312136356|ref|YP_004003693.1| - 0.13 12.5 2.5 0.45 10.8 0.1 2.8 4 0 0 4 4 4 0 Bacteriophage FRD2 protein NTP_transferase PF00483.23 gi|312136357|ref|YP_004003694.1| - 6.5e-47 160.2 0.0 8.8e-47 159.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|312136357|ref|YP_004003694.1| - 6.9e-19 66.8 32.2 8.9e-08 31.6 2.3 5.7 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|312136357|ref|YP_004003694.1| - 1.5e-11 44.9 0.0 2.1e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|312136357|ref|YP_004003694.1| - 3.5e-08 33.1 19.8 5.4e-05 22.8 2.7 4.7 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|312136357|ref|YP_004003694.1| - 0.0021 16.3 9.9 0.0086 14.3 5.3 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4954) IspD PF01128.19 gi|312136357|ref|YP_004003694.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|312136357|ref|YP_004003694.1| - 0.028 14.2 0.0 0.043 13.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 NTP_transf_4 PF13562.6 gi|312136357|ref|YP_004003694.1| - 0.16 12.2 0.7 5.3 7.2 0.0 2.9 2 1 0 2 2 2 0 Sugar nucleotidyl transferase PGM_PMM_I PF02878.16 gi|312136358|ref|YP_004003695.1| - 7.9e-47 158.4 0.1 1.6e-46 157.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|312136358|ref|YP_004003695.1| - 1.5e-29 102.6 0.1 5.4e-29 100.8 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|312136358|ref|YP_004003695.1| - 8.7e-23 80.7 0.0 1.6e-22 79.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|312136358|ref|YP_004003695.1| - 4.7e-12 45.9 0.0 1.4e-11 44.4 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PhosphMutase PF10143.9 gi|312136359|ref|YP_004003696.1| - 9.7e-60 201.3 0.0 1.7e-59 200.5 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|312136359|ref|YP_004003696.1| - 1.8e-48 165.1 0.1 2.1e-48 164.9 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|312136359|ref|YP_004003696.1| - 0.00013 21.7 0.0 0.36 10.4 0.0 2.3 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF212 PF02681.14 gi|312136359|ref|YP_004003696.1| - 0.1 12.8 0.0 0.37 10.9 0.0 1.9 2 0 0 2 2 2 0 Divergent PAP2 family Lambda_CIII PF02061.16 gi|312136359|ref|YP_004003696.1| - 0.15 12.2 0.1 0.36 10.9 0.1 1.6 1 0 0 1 1 1 0 Lambda Phage CIII DUF92 PF01940.16 gi|312136360|ref|YP_004003697.1| - 4.9e-53 180.0 6.4 5.4e-53 179.8 6.4 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 DUF3742 PF12553.8 gi|312136360|ref|YP_004003697.1| - 0.16 12.1 1.2 1.8 8.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) FUSC_2 PF13515.6 gi|312136360|ref|YP_004003697.1| - 0.99 9.5 14.5 0.67 10.1 1.8 3.3 3 0 0 3 3 3 0 Fusaric acid resistance protein-like DUF4538 PF15061.6 gi|312136360|ref|YP_004003697.1| - 2.2 8.1 9.7 2.6 7.9 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) CbtB PF09489.10 gi|312136360|ref|YP_004003697.1| - 2.8 8.1 5.8 1.2 9.3 0.6 2.5 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Halogen_Hydrol PF10112.9 gi|312136360|ref|YP_004003697.1| - 2.9 7.9 8.8 1.2 9.1 0.6 2.2 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4133 PF13571.6 gi|312136360|ref|YP_004003697.1| - 4.6 7.7 10.1 0.12 12.7 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4133) Ribosomal_S3Ae PF01015.18 gi|312136361|ref|YP_004003698.1| - 4.5e-63 212.5 5.3 5e-63 212.3 5.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.25 gi|312136361|ref|YP_004003698.1| - 0.044 13.8 2.1 0.14 12.1 2.1 1.9 1 1 0 1 1 1 0 SPFH domain / Band 7 family AMP-binding_C_2 PF14535.6 gi|312136362|ref|YP_004003699.1| - 9.4e-34 115.6 2.6 2.5e-33 114.2 0.9 2.5 3 1 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|312136362|ref|YP_004003699.1| - 1.3e-16 60.3 2.5 1.1e-15 57.2 2.5 2.0 1 1 0 1 1 1 1 AMP-binding enzyme PRC PF05239.16 gi|312136363|ref|YP_004003700.1| - 8.4e-13 48.2 4.9 1e-12 47.9 4.9 1.1 1 0 0 1 1 1 1 PRC-barrel domain Pribosyltran PF00156.27 gi|312136364|ref|YP_004003701.1| - 1e-14 54.4 4.2 1.7e-14 53.6 4.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|312136364|ref|YP_004003701.1| - 0.0077 15.7 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Prok-RING_2 PF14445.6 gi|312136364|ref|YP_004003701.1| - 0.014 15.6 5.5 0.21 11.8 7.7 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 PRTase_2 PF15609.6 gi|312136364|ref|YP_004003701.1| - 0.079 12.5 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase PIRT PF15099.6 gi|312136364|ref|YP_004003701.1| - 0.082 12.5 0.5 0.17 11.5 0.5 1.5 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family FYVE PF01363.21 gi|312136364|ref|YP_004003701.1| - 0.35 11.0 11.3 1.4 9.1 11.3 2.0 1 1 0 1 1 1 0 FYVE zinc finger Prok-RING_4 PF14447.6 gi|312136364|ref|YP_004003701.1| - 0.97 9.3 7.3 1.9 8.4 7.3 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 zf-B_box PF00643.24 gi|312136364|ref|YP_004003701.1| - 1 9.5 7.0 2.3 8.5 7.0 1.6 1 1 0 1 1 1 0 B-box zinc finger Ribosomal_S14 PF00253.21 gi|312136364|ref|YP_004003701.1| - 4.3 7.2 8.5 0.88 9.4 4.2 2.0 2 1 1 3 3 3 0 Ribosomal protein S14p/S29e MoCF_biosynth PF00994.24 gi|312136365|ref|YP_004003702.1| - 1.6e-34 118.6 0.0 1.9e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain ACT PF01842.25 gi|312136366|ref|YP_004003703.1| - 2.6e-15 55.9 0.3 1.6e-06 27.8 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|312136366|ref|YP_004003703.1| - 2.4e-06 28.0 1.1 0.09 13.4 0.1 2.3 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|312136366|ref|YP_004003703.1| - 0.00031 20.5 0.1 0.35 10.7 0.0 2.9 2 1 0 2 2 2 2 ACT domain DUF3780 PF12635.7 gi|312136367|ref|YP_004003704.1| - 0.065 13.0 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3780) SecE PF00584.20 gi|312136369|ref|YP_004003706.1| - 2.1e-07 30.7 0.2 2.7e-07 30.4 0.2 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|312136370|ref|YP_004003707.1| - 9.9e-23 79.8 1.1 1.7e-22 79.1 0.1 1.7 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|312136370|ref|YP_004003707.1| - 2.9e-06 27.0 0.1 2.9e-06 27.0 0.1 1.7 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|312136370|ref|YP_004003707.1| - 0.002 18.6 0.6 0.022 15.2 0.0 2.6 2 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.14 gi|312136371|ref|YP_004003708.1| - 2.3e-25 88.2 2.2 4.5e-25 87.3 0.5 2.2 2 1 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|312136371|ref|YP_004003708.1| - 1.6e-23 82.9 0.2 3e-23 82.1 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|312136372|ref|YP_004003709.1| - 7.6e-47 159.7 3.2 9e-47 159.4 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ntox35 PF15534.6 gi|312136372|ref|YP_004003709.1| - 0.28 11.7 3.4 1.8 9.1 0.8 2.5 2 0 0 2 2 2 0 Bacterial toxin 35 Ribosomal_L10 PF00466.20 gi|312136373|ref|YP_004003710.1| - 3.7e-26 91.2 0.7 1.1e-25 89.6 0.7 1.8 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|312136373|ref|YP_004003710.1| - 1.4e-21 76.2 0.2 3e-21 75.2 0.2 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P AP3D1 PF06375.11 gi|312136373|ref|YP_004003710.1| - 0.0021 18.3 4.0 0.0045 17.3 4.0 1.5 1 0 0 1 1 1 1 AP-3 complex subunit delta-1 Coilin_N PF15862.5 gi|312136373|ref|YP_004003710.1| - 0.0051 16.6 4.3 0.21 11.4 4.0 2.3 2 0 0 2 2 2 1 Coilin N-terminus CLN3 PF02487.17 gi|312136373|ref|YP_004003710.1| - 0.011 14.8 0.3 0.017 14.2 0.3 1.2 1 0 0 1 1 1 0 CLN3 protein TRAP-gamma PF07074.12 gi|312136373|ref|YP_004003710.1| - 0.094 12.3 2.9 0.16 11.5 2.9 1.3 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Myc_N PF01056.18 gi|312136373|ref|YP_004003710.1| - 0.098 12.5 1.3 0.13 12.2 1.3 1.1 1 0 0 1 1 1 0 Myc amino-terminal region PBP_sp32 PF07222.12 gi|312136373|ref|YP_004003710.1| - 0.24 10.8 2.9 0.36 10.3 2.9 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 BSP_II PF05432.11 gi|312136373|ref|YP_004003710.1| - 0.46 10.1 8.7 0.65 9.6 8.7 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Ribosomal_60s PF00428.19 gi|312136373|ref|YP_004003710.1| - 0.51 11.0 17.3 4.2 8.0 17.3 2.5 1 1 0 1 1 1 0 60s Acidic ribosomal protein SMN PF06003.12 gi|312136373|ref|YP_004003710.1| - 1.5 8.0 4.8 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Survival motor neuron protein (SMN) Ribosomal_60s PF00428.19 gi|312136374|ref|YP_004003711.1| - 3.7e-13 49.9 41.3 1.4e-11 44.8 41.3 2.1 1 1 0 1 1 1 1 60s Acidic ribosomal protein YceD PF02620.17 gi|312136374|ref|YP_004003711.1| - 0.019 15.1 11.0 0.022 14.9 11.0 1.1 1 0 0 1 1 1 0 Large ribosomal RNA subunit accumulation protein YceD DUF2052 PF09747.9 gi|312136374|ref|YP_004003711.1| - 0.022 14.9 13.9 0.028 14.6 13.9 1.1 1 0 0 1 1 1 0 Coiled-coil domain containing protein (DUF2052) DUF719 PF05334.13 gi|312136374|ref|YP_004003711.1| - 0.094 12.9 5.9 0.11 12.7 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF719) RRN3 PF05327.11 gi|312136374|ref|YP_004003711.1| - 0.11 11.0 9.0 0.13 10.8 9.0 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Paf1 PF03985.13 gi|312136374|ref|YP_004003711.1| - 0.13 11.2 17.7 0.15 11.0 17.7 1.1 1 0 0 1 1 1 0 Paf1 DUF2868 PF11067.8 gi|312136374|ref|YP_004003711.1| - 0.17 11.4 2.6 0.21 11.1 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) SDA1 PF05285.12 gi|312136374|ref|YP_004003711.1| - 0.17 11.3 14.5 0.2 11.1 14.5 1.1 1 0 0 1 1 1 0 SDA1 Connexin PF00029.19 gi|312136374|ref|YP_004003711.1| - 0.19 11.4 2.3 0.21 11.3 2.3 1.2 1 0 0 1 1 1 0 Connexin DUF4471 PF14740.6 gi|312136374|ref|YP_004003711.1| - 0.26 10.5 4.0 0.26 10.5 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) DDHD PF02862.17 gi|312136374|ref|YP_004003711.1| - 0.3 11.2 1.3 0.35 11.0 1.3 1.0 1 0 0 1 1 1 0 DDHD domain NOA36 PF06524.12 gi|312136374|ref|YP_004003711.1| - 0.32 10.3 11.7 0.37 10.1 11.7 1.2 1 0 0 1 1 1 0 NOA36 protein DNA_pol_phi PF04931.13 gi|312136374|ref|YP_004003711.1| - 0.34 9.0 16.9 0.38 8.8 16.9 1.1 1 0 0 1 1 1 0 DNA polymerase phi PAP_RNA-bind PF04926.15 gi|312136374|ref|YP_004003711.1| - 0.35 10.5 5.4 0.43 10.2 5.4 1.2 1 0 0 1 1 1 0 Poly(A) polymerase predicted RNA binding domain Zip PF02535.22 gi|312136374|ref|YP_004003711.1| - 0.4 9.9 1.2 0.37 10.0 1.2 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter RAB3GAP2_C PF14656.6 gi|312136374|ref|YP_004003711.1| - 0.51 8.5 3.5 0.56 8.4 3.5 1.2 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit C-terminus Presenilin PF01080.17 gi|312136374|ref|YP_004003711.1| - 0.54 9.0 4.0 0.57 8.9 4.0 1.1 1 0 0 1 1 1 0 Presenilin CPSF100_C PF13299.6 gi|312136374|ref|YP_004003711.1| - 0.56 10.4 8.4 0.69 10.1 8.4 1.2 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal TFB6 PF17110.5 gi|312136374|ref|YP_004003711.1| - 0.56 9.9 6.6 0.67 9.7 6.6 1.1 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH RR_TM4-6 PF06459.12 gi|312136374|ref|YP_004003711.1| - 0.62 9.8 11.1 0.75 9.6 11.1 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 BUD22 PF09073.10 gi|312136374|ref|YP_004003711.1| - 0.63 9.3 14.8 0.75 9.1 14.8 1.1 1 0 0 1 1 1 0 BUD22 RNA_pol_3_Rpc31 PF11705.8 gi|312136374|ref|YP_004003711.1| - 0.63 10.3 20.0 0.78 10.0 20.0 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 CENP-B_dimeris PF09026.10 gi|312136374|ref|YP_004003711.1| - 0.65 10.4 11.4 1.2 9.6 11.4 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain DUF913 PF06025.12 gi|312136374|ref|YP_004003711.1| - 0.82 8.6 4.8 0.89 8.5 4.8 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) DUF3408 PF11888.8 gi|312136374|ref|YP_004003711.1| - 1.1 9.4 14.1 1.8 8.7 14.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) RPN2_C PF18004.1 gi|312136374|ref|YP_004003711.1| - 1.4 8.8 14.3 1.8 8.5 14.3 1.2 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN2 C-terminal domain CDC45 PF02724.14 gi|312136374|ref|YP_004003711.1| - 1.5 7.1 12.6 1.6 7.0 12.6 1.1 1 0 0 1 1 1 0 CDC45-like protein Cytochrom_C552 PF02335.15 gi|312136374|ref|YP_004003711.1| - 1.7 7.5 6.7 1.9 7.3 6.7 1.0 1 0 0 1 1 1 0 Cytochrome c552 V_ATPase_I PF01496.19 gi|312136374|ref|YP_004003711.1| - 2.2 6.1 3.9 2.2 6.1 3.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family THOC2_N PF16134.5 gi|312136374|ref|YP_004003711.1| - 2.2 6.8 10.5 2.6 6.6 10.5 1.0 1 0 0 1 1 1 0 THO complex subunit 2 N-terminus PI3K_1B_p101 PF10486.9 gi|312136374|ref|YP_004003711.1| - 2.4 5.8 5.7 2.4 5.8 5.7 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit DUF3391 PF11871.8 gi|312136374|ref|YP_004003711.1| - 2.5 8.7 12.3 3.1 8.3 12.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Nop14 PF04147.12 gi|312136374|ref|YP_004003711.1| - 2.7 6.1 17.6 2.9 6.0 17.6 1.0 1 0 0 1 1 1 0 Nop14-like family BSP_II PF05432.11 gi|312136374|ref|YP_004003711.1| - 2.7 7.6 22.1 3.3 7.3 22.1 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) LUC7 PF03194.15 gi|312136374|ref|YP_004003711.1| - 2.9 7.5 13.1 3.4 7.3 13.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus PPP4R2 PF09184.11 gi|312136374|ref|YP_004003711.1| - 2.9 7.4 15.7 3.3 7.2 15.7 1.1 1 0 0 1 1 1 0 PPP4R2 DUF4366 PF14283.6 gi|312136374|ref|YP_004003711.1| - 3 7.9 12.1 3.7 7.6 12.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) CDC27 PF09507.10 gi|312136374|ref|YP_004003711.1| - 3.3 7.0 15.7 3.7 6.8 15.7 1.0 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 Vfa1 PF08432.10 gi|312136374|ref|YP_004003711.1| - 3.3 8.0 11.4 4 7.7 11.4 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Myc_N PF01056.18 gi|312136374|ref|YP_004003711.1| - 3.9 7.3 12.0 4.5 7.1 12.0 1.2 1 0 0 1 1 1 0 Myc amino-terminal region Spore_coat_CotO PF14153.6 gi|312136374|ref|YP_004003711.1| - 4.2 7.2 16.0 4.9 7.0 16.0 1.1 1 0 0 1 1 1 0 Spore coat protein CotO HA2 PF04408.23 gi|312136374|ref|YP_004003711.1| - 5 7.4 6.5 13 6.2 6.5 1.7 1 1 0 1 1 1 0 Helicase associated domain (HA2) RNA_polI_A34 PF08208.11 gi|312136374|ref|YP_004003711.1| - 5.3 7.1 17.7 6.1 6.9 17.7 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 Sigma70_ner PF04546.13 gi|312136374|ref|YP_004003711.1| - 7.6 6.4 19.8 8.4 6.2 19.4 1.3 1 1 0 1 1 1 0 Sigma-70, non-essential region tRNA-synt_2c PF01411.19 gi|312136375|ref|YP_004003712.1| - 8.7e-146 486.6 0.0 1.3e-145 486.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|312136375|ref|YP_004003712.1| - 8.4e-20 71.6 4.8 3e-19 69.8 4.8 2.0 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|312136375|ref|YP_004003712.1| - 4.3e-12 45.9 0.4 1.4e-11 44.3 0.4 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|312136375|ref|YP_004003712.1| - 5.2e-07 29.2 0.0 1.1e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Swm2 PF17083.5 gi|312136375|ref|YP_004003712.1| - 0.16 12.0 8.4 0.15 12.1 0.2 3.5 3 0 0 3 3 3 0 Nucleolar protein Swm2 APG6_N PF17675.1 gi|312136375|ref|YP_004003712.1| - 0.57 10.7 3.1 0.4 11.2 0.6 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region Spore_II_R PF09551.10 gi|312136375|ref|YP_004003712.1| - 2.8 8.4 6.4 1.4 9.4 0.0 3.1 4 0 0 4 4 4 0 Stage II sporulation protein R (spore_II_R) TMPIT PF07851.13 gi|312136375|ref|YP_004003712.1| - 5.3 6.2 6.7 12 5.0 1.8 2.3 2 0 0 2 2 2 0 TMPIT-like protein bZIP_1 PF00170.21 gi|312136375|ref|YP_004003712.1| - 6.1 7.0 9.1 0.59 10.3 0.2 3.3 3 0 0 3 3 3 0 bZIP transcription factor BLOC1_2 PF10046.9 gi|312136375|ref|YP_004003712.1| - 9.2 6.6 11.2 0.12 12.7 0.5 3.1 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HcyBio PF01837.16 gi|312136376|ref|YP_004003713.1| - 2.7e-104 348.8 0.0 3.1e-104 348.6 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_7 PF12838.7 gi|312136376|ref|YP_004003713.1| - 0.00026 21.5 5.9 0.13 12.8 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136376|ref|YP_004003713.1| - 0.0015 18.5 1.7 0.0015 18.5 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312136376|ref|YP_004003713.1| - 0.01 16.3 4.9 0.59 10.6 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136376|ref|YP_004003713.1| - 0.016 15.3 8.5 0.81 9.9 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312136376|ref|YP_004003713.1| - 0.024 15.2 5.6 1.3 9.7 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136376|ref|YP_004003713.1| - 0.024 14.8 13.2 0.1 12.8 13.5 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312136376|ref|YP_004003713.1| - 0.17 11.7 15.3 0.84 9.6 2.3 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136376|ref|YP_004003713.1| - 0.27 11.4 15.5 3.4 7.9 15.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain TNFR_c6 PF00020.18 gi|312136376|ref|YP_004003713.1| - 0.55 10.7 6.4 6.4 7.3 0.1 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_4 PF12800.7 gi|312136376|ref|YP_004003713.1| - 1.4 9.7 13.5 4.4 8.1 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136376|ref|YP_004003713.1| - 1.5 9.0 13.5 4.7 7.4 3.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain ThiI PF02568.14 gi|312136377|ref|YP_004003714.1| - 6.1e-69 231.6 0.2 9.2e-69 231.0 0.2 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|312136377|ref|YP_004003714.1| - 1.3e-24 86.9 2.4 1.3e-24 86.9 2.4 1.8 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|312136377|ref|YP_004003714.1| - 9.3e-08 31.8 0.1 2.2e-05 24.1 0.1 2.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|312136377|ref|YP_004003714.1| - 1.2e-05 24.3 0.1 0.0022 16.9 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|312136377|ref|YP_004003714.1| - 0.048 13.4 0.1 0.65 9.7 0.0 2.4 2 1 0 2 2 2 0 PP-loop family Cupredoxin_1 PF13473.6 gi|312136377|ref|YP_004003714.1| - 0.1 12.7 0.0 22 5.2 0.0 3.2 3 0 0 3 3 3 0 Cupredoxin-like domain DUF2892 PF11127.8 gi|312136378|ref|YP_004003715.1| - 0.018 15.0 0.8 0.026 14.6 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DUF3040 PF11239.8 gi|312136378|ref|YP_004003715.1| - 0.14 12.4 1.7 0.18 12.1 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) His_biosynth PF00977.21 gi|312136379|ref|YP_004003716.1| - 6.4e-41 140.3 0.1 7.3e-41 140.1 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|312136379|ref|YP_004003716.1| - 0.0009 19.1 0.1 0.002 17.9 0.1 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PRAI PF00697.22 gi|312136379|ref|YP_004003716.1| - 0.033 14.0 0.2 0.072 12.9 0.1 1.5 1 1 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF2149 PF09919.9 gi|312136380|ref|YP_004003717.1| - 1.1e-20 73.7 0.2 1.2e-20 73.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|312136381|ref|YP_004003718.1| - 1.5e-07 31.2 0.1 1.5e-07 31.2 0.1 1.9 2 1 0 2 2 2 1 MotA/TolQ/ExbB proton channel family Sigma70_r4 PF04545.16 gi|312136381|ref|YP_004003718.1| - 0.052 13.1 0.7 7 6.3 0.1 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2162 PF09930.9 gi|312136382|ref|YP_004003719.1| - 3.6e-65 219.5 26.2 4e-65 219.4 26.2 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Abhydrolase_9_N PF15420.6 gi|312136382|ref|YP_004003719.1| - 0.077 13.0 6.1 0.94 9.4 4.8 2.3 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus PepSY PF03413.19 gi|312136383|ref|YP_004003720.1| - 4.6e-06 27.1 0.6 9.8e-06 26.0 0.6 1.4 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain tRNA_anti-like PF12869.7 gi|312136383|ref|YP_004003720.1| - 0.011 15.4 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 0 tRNA_anti-like HemX PF04375.14 gi|312136383|ref|YP_004003720.1| - 0.049 12.9 0.1 0.055 12.7 0.1 1.0 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4834 PF16118.5 gi|312136383|ref|YP_004003720.1| - 0.051 14.5 0.3 0.074 14.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Chordopox_A13L PF05961.11 gi|312136383|ref|YP_004003720.1| - 0.1 12.9 0.5 0.22 11.8 0.2 1.7 1 1 1 2 2 2 0 Chordopoxvirus A13L protein PGK PF00162.19 gi|312136384|ref|YP_004003721.1| - 6.1e-113 377.6 0.2 7e-113 377.4 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase TIM PF00121.18 gi|312136385|ref|YP_004003722.1| - 7.2e-13 48.5 0.9 1.3e-12 47.7 0.7 1.5 1 1 1 2 2 2 1 Triosephosphate isomerase NMO PF03060.15 gi|312136385|ref|YP_004003722.1| - 6.1e-06 25.9 0.4 6.1e-06 25.9 0.4 2.4 2 1 1 3 3 3 1 Nitronate monooxygenase ThiG PF05690.14 gi|312136385|ref|YP_004003722.1| - 2.1e-05 24.0 1.5 0.0002 20.7 0.2 2.3 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|312136385|ref|YP_004003722.1| - 5.1e-05 22.5 0.0 9.1e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|312136385|ref|YP_004003722.1| - 0.00097 18.4 0.4 0.0021 17.3 0.4 1.8 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|312136385|ref|YP_004003722.1| - 0.0049 16.4 1.3 0.033 13.6 0.1 2.7 2 1 1 3 3 3 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|312136385|ref|YP_004003722.1| - 0.0084 15.3 1.1 0.037 13.2 1.1 2.0 1 1 0 1 1 1 1 Conserved region in glutamate synthase PcrB PF01884.17 gi|312136385|ref|YP_004003722.1| - 0.011 15.2 1.4 0.028 13.9 1.4 2.0 1 1 0 1 1 1 0 PcrB family TMP-TENI PF02581.17 gi|312136385|ref|YP_004003722.1| - 0.026 13.9 0.6 5.3 6.3 0.0 2.6 2 1 0 2 2 2 0 Thiamine monophosphate synthase Rad51 PF08423.11 gi|312136385|ref|YP_004003722.1| - 0.036 13.3 0.0 0.6 9.3 0.0 2.1 2 0 0 2 2 2 0 Rad51 B12-binding PF02310.19 gi|312136385|ref|YP_004003722.1| - 0.057 13.5 0.1 0.1 12.7 0.1 1.4 1 0 0 1 1 1 0 B12 binding domain TP_methylase PF00590.20 gi|312136386|ref|YP_004003723.1| - 5.3e-34 118.0 0.0 6.2e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MMR_HSR1_C PF08438.10 gi|312136387|ref|YP_004003724.1| - 2.5e-40 137.5 2.5 4.5e-40 136.7 2.5 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|312136387|ref|YP_004003724.1| - 1.6e-20 73.3 0.0 6.3e-20 71.4 0.0 2.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|312136387|ref|YP_004003724.1| - 1.7e-13 50.4 0.0 3.1e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|312136387|ref|YP_004003724.1| - 2.2e-07 30.6 0.1 5.1e-06 26.1 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|312136387|ref|YP_004003724.1| - 0.015 15.3 0.6 0.045 13.8 0.1 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_lid_2 PF17863.1 gi|312136388|ref|YP_004003725.1| - 4.5e-15 55.2 0.0 9e-15 54.3 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|312136388|ref|YP_004003725.1| - 6.5e-15 55.1 0.0 2e-07 30.6 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|312136388|ref|YP_004003725.1| - 1e-10 42.2 0.0 3.1e-10 40.6 0.0 1.9 2 0 0 2 2 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|312136388|ref|YP_004003725.1| - 2.5e-08 34.0 0.1 0.01 15.8 0.0 3.0 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|312136388|ref|YP_004003725.1| - 5.1e-08 32.3 0.0 8.1e-05 21.8 0.0 3.1 2 1 0 2 2 2 2 MCM P-loop domain VWA PF00092.28 gi|312136388|ref|YP_004003725.1| - 1.8e-05 25.1 0.1 3.5e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_16 PF13191.6 gi|312136388|ref|YP_004003725.1| - 0.00023 21.6 0.0 0.00064 20.1 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|312136388|ref|YP_004003725.1| - 0.0005 20.3 0.0 0.0028 17.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|312136388|ref|YP_004003725.1| - 0.00063 19.5 0.0 0.36 10.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|312136388|ref|YP_004003725.1| - 0.0027 18.2 0.1 0.021 15.2 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|312136388|ref|YP_004003725.1| - 0.0053 16.0 0.0 0.03 13.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_29 PF13555.6 gi|312136388|ref|YP_004003725.1| - 0.011 15.5 0.1 0.025 14.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase_C PF13335.6 gi|312136388|ref|YP_004003725.1| - 0.015 15.9 0.6 0.044 14.4 0.2 2.0 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal TIP49_C PF17856.1 gi|312136388|ref|YP_004003725.1| - 0.019 15.1 1.1 0.051 13.7 1.1 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain TIP49 PF06068.13 gi|312136388|ref|YP_004003725.1| - 0.026 13.8 3.7 2.8 7.1 0.0 2.8 3 0 0 3 3 3 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|312136388|ref|YP_004003725.1| - 0.041 13.4 0.0 0.16 11.5 0.0 1.9 1 1 1 2 2 2 0 P-loop containing dynein motor region TsaE PF02367.17 gi|312136388|ref|YP_004003725.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CobN-Mg_chel PF02514.16 gi|312136389|ref|YP_004003726.1| - 0 1083.0 0.0 0 1082.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase TP_methylase PF00590.20 gi|312136390|ref|YP_004003727.1| - 1.5e-50 172.1 0.0 1.8e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SRP54 PF00448.22 gi|312136391|ref|YP_004003728.1| - 1.2e-78 263.3 2.0 2.1e-78 262.5 2.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|312136391|ref|YP_004003728.1| - 9.6e-13 48.2 4.1 9.6e-13 48.2 4.1 2.6 1 1 1 2 2 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|312136391|ref|YP_004003728.1| - 5.1e-08 32.9 0.5 8.2e-08 32.2 0.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|312136391|ref|YP_004003728.1| - 9.6e-07 29.3 0.4 9.6e-07 29.3 0.4 2.3 2 1 1 3 3 3 1 AAA domain cobW PF02492.19 gi|312136391|ref|YP_004003728.1| - 9.1e-05 22.1 0.9 0.00018 21.2 0.9 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|312136391|ref|YP_004003728.1| - 0.00019 21.5 1.6 0.00052 20.1 0.8 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|312136391|ref|YP_004003728.1| - 0.00038 20.7 0.0 0.0011 19.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|312136391|ref|YP_004003728.1| - 0.00088 19.6 1.1 0.0029 17.9 1.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|312136391|ref|YP_004003728.1| - 0.0014 19.1 1.2 0.0055 17.1 1.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|312136391|ref|YP_004003728.1| - 0.0014 17.9 0.3 0.0031 16.8 0.3 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|312136391|ref|YP_004003728.1| - 0.0016 17.8 0.1 0.0028 17.0 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin ResIII PF04851.15 gi|312136391|ref|YP_004003728.1| - 0.0035 17.4 2.8 0.0035 17.4 2.8 2.6 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit B12-binding PF02310.19 gi|312136391|ref|YP_004003728.1| - 0.0037 17.3 0.1 0.0092 16.0 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain CLP1_P PF16575.5 gi|312136391|ref|YP_004003728.1| - 0.0049 16.7 0.1 0.25 11.1 0.1 2.3 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_33 PF13671.6 gi|312136391|ref|YP_004003728.1| - 0.0055 16.9 0.1 0.011 15.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|312136391|ref|YP_004003728.1| - 0.0068 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Helicase_RecD PF05127.14 gi|312136391|ref|YP_004003728.1| - 0.0079 16.1 0.3 0.0079 16.1 0.3 1.8 2 0 0 2 2 2 1 Helicase AAA_16 PF13191.6 gi|312136391|ref|YP_004003728.1| - 0.014 15.8 0.1 0.05 14.0 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|312136391|ref|YP_004003728.1| - 0.015 14.8 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|312136391|ref|YP_004003728.1| - 0.017 14.9 0.2 0.044 13.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|312136391|ref|YP_004003728.1| - 0.019 14.7 0.7 0.046 13.4 0.1 2.0 3 0 0 3 3 1 0 Thymidylate kinase MeaB PF03308.16 gi|312136391|ref|YP_004003728.1| - 0.02 13.9 0.5 0.12 11.4 0.5 2.1 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|312136391|ref|YP_004003728.1| - 0.021 14.7 4.8 0.1 12.5 0.2 2.4 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.18 gi|312136391|ref|YP_004003728.1| - 0.022 14.0 0.4 0.065 12.5 0.4 2.0 1 1 0 1 1 1 0 6-phosphofructo-2-kinase RNA_helicase PF00910.22 gi|312136391|ref|YP_004003728.1| - 0.023 15.1 0.3 0.21 12.0 0.3 2.4 1 1 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|312136391|ref|YP_004003728.1| - 0.023 14.6 7.6 1.3 8.9 0.2 3.3 2 1 1 3 3 3 0 NTPase DUF853 PF05872.12 gi|312136391|ref|YP_004003728.1| - 0.024 13.2 0.1 0.024 13.2 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.27 gi|312136391|ref|YP_004003728.1| - 0.031 14.8 0.7 0.19 12.3 0.0 2.2 2 0 0 2 2 2 0 ABC transporter CbiA PF01656.23 gi|312136391|ref|YP_004003728.1| - 0.032 14.3 4.4 0.2 11.7 0.2 2.8 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|312136391|ref|YP_004003728.1| - 0.041 13.8 2.9 0.16 11.9 1.0 2.9 1 1 2 3 3 3 0 RsgA GTPase APS_kinase PF01583.20 gi|312136391|ref|YP_004003728.1| - 0.08 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Sigma54_activat PF00158.26 gi|312136391|ref|YP_004003728.1| - 0.096 12.4 0.7 5.4 6.7 0.1 2.6 2 1 0 2 2 2 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|312136391|ref|YP_004003728.1| - 0.12 11.8 0.9 0.29 10.6 0.0 2.1 1 1 1 2 2 2 0 Chromatin associated protein KTI12 DUF2855 PF11017.8 gi|312136391|ref|YP_004003728.1| - 0.16 11.7 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) AAA_15 PF13175.6 gi|312136391|ref|YP_004003728.1| - 0.81 9.3 15.3 0.23 11.1 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain Ribosomal_S20p PF01649.18 gi|312136391|ref|YP_004003728.1| - 2 9.1 8.1 0.16 12.7 1.1 2.5 2 0 0 2 2 2 0 Ribosomal protein S20 Pox_A32 PF04665.12 gi|312136391|ref|YP_004003728.1| - 2.5 7.5 7.0 0.38 10.2 1.3 2.3 2 1 0 2 2 1 0 Poxvirus A32 protein Prefoldin PF02996.17 gi|312136392|ref|YP_004003729.1| - 3.4e-26 91.5 4.3 3.4e-26 91.5 4.3 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|312136392|ref|YP_004003729.1| - 4.6e-09 36.2 10.4 3.4e-06 26.9 3.9 2.1 2 0 0 2 2 2 2 Prefoldin subunit PI3K_P85_iSH2 PF16454.5 gi|312136392|ref|YP_004003729.1| - 0.00021 21.0 0.9 0.00042 20.0 0.9 1.5 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Gp-FAR-1 PF05823.12 gi|312136392|ref|YP_004003729.1| - 0.00021 21.7 2.6 0.00021 21.7 2.6 2.0 2 0 0 2 2 2 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) CALCOCO1 PF07888.11 gi|312136392|ref|YP_004003729.1| - 0.0016 17.4 0.9 0.0016 17.4 0.9 1.9 2 0 0 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like ApoLp-III PF07464.11 gi|312136392|ref|YP_004003729.1| - 0.0028 17.8 1.4 0.0028 17.8 1.4 2.1 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) DUF3086 PF11285.8 gi|312136392|ref|YP_004003729.1| - 0.0035 16.5 3.5 0.013 14.6 2.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3086) DHR10 PF18595.1 gi|312136392|ref|YP_004003729.1| - 0.0035 17.4 3.5 0.0035 17.4 3.5 2.2 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain APG6_N PF17675.1 gi|312136392|ref|YP_004003729.1| - 0.004 17.7 9.8 0.0049 17.4 0.6 2.1 2 0 0 2 2 2 1 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|312136392|ref|YP_004003729.1| - 0.004 17.6 7.6 0.23 11.9 0.5 2.3 2 0 0 2 2 2 2 Nucleopolyhedrovirus P10 protein PTRF_SDPR PF15237.6 gi|312136392|ref|YP_004003729.1| - 0.0045 16.6 1.3 0.0045 16.6 1.3 1.9 2 0 0 2 2 2 1 PTRF/SDPR family Baculo_PEP_C PF04513.12 gi|312136392|ref|YP_004003729.1| - 0.0064 16.5 1.6 0.31 11.1 0.1 2.2 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus YkyA PF10368.9 gi|312136392|ref|YP_004003729.1| - 0.0071 16.0 4.2 0.0071 16.0 4.2 2.1 2 0 0 2 2 2 1 Putative cell-wall binding lipoprotein Tektin PF03148.14 gi|312136392|ref|YP_004003729.1| - 0.0074 15.1 1.0 0.0074 15.1 1.0 2.0 2 0 0 2 2 2 1 Tektin family DUF1664 PF07889.12 gi|312136392|ref|YP_004003729.1| - 0.0096 16.0 8.7 0.035 14.1 1.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) DUF4200 PF13863.6 gi|312136392|ref|YP_004003729.1| - 0.0098 16.3 10.9 0.014 15.8 1.7 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4200) DUF948 PF06103.11 gi|312136392|ref|YP_004003729.1| - 0.012 15.9 1.9 0.063 13.5 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|312136392|ref|YP_004003729.1| - 0.014 15.4 7.1 0.12 12.3 0.9 2.2 2 0 0 2 2 2 0 Laminin Domain II GAS PF13851.6 gi|312136392|ref|YP_004003729.1| - 0.017 14.5 12.7 0.067 12.5 5.5 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2205 PF10224.9 gi|312136392|ref|YP_004003729.1| - 0.018 15.1 10.8 0.021 14.8 3.9 2.3 2 0 0 2 2 2 0 Short coiled-coil protein DUF4618 PF15397.6 gi|312136392|ref|YP_004003729.1| - 0.018 14.5 2.1 0.018 14.5 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) LPD39 PF18858.1 gi|312136392|ref|YP_004003729.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 Large polyvalent protein associated domain 39 IFT57 PF10498.9 gi|312136392|ref|YP_004003729.1| - 0.022 13.7 0.8 0.022 13.7 0.8 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DLP_helical PF18709.1 gi|312136392|ref|YP_004003729.1| - 0.023 13.9 7.1 0.2 10.8 2.8 2.1 1 1 1 2 2 2 0 Dynamin-like helical domain KASH_CCD PF14662.6 gi|312136392|ref|YP_004003729.1| - 0.026 14.4 2.5 0.026 14.4 2.5 2.1 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH FlaC_arch PF05377.11 gi|312136392|ref|YP_004003729.1| - 0.026 14.9 12.4 0.13 12.7 2.2 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) PspA_IM30 PF04012.12 gi|312136392|ref|YP_004003729.1| - 0.027 14.1 7.1 0.036 13.7 1.4 2.1 2 0 0 2 2 2 0 PspA/IM30 family CENP-F_leu_zip PF10473.9 gi|312136392|ref|YP_004003729.1| - 0.027 14.5 12.2 0.21 11.6 3.3 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|312136392|ref|YP_004003729.1| - 0.03 14.8 13.0 0.14 12.7 13.0 1.8 1 1 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 gi|312136392|ref|YP_004003729.1| - 0.031 14.5 11.9 0.5 10.7 1.8 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MtrB PF05440.12 gi|312136392|ref|YP_004003729.1| - 0.041 14.3 0.7 4.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Snf7 PF03357.21 gi|312136392|ref|YP_004003729.1| - 0.043 13.4 16.5 0.099 12.2 7.4 2.2 2 0 0 2 2 2 0 Snf7 DUF1319 PF07028.11 gi|312136392|ref|YP_004003729.1| - 0.043 14.0 4.2 1.1 9.5 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) DUF724 PF05266.14 gi|312136392|ref|YP_004003729.1| - 0.044 13.6 7.6 0.064 13.1 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF1043 PF06295.12 gi|312136392|ref|YP_004003729.1| - 0.046 13.7 0.3 0.046 13.7 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) Val_tRNA-synt_C PF10458.9 gi|312136392|ref|YP_004003729.1| - 0.051 13.9 8.5 0.16 12.3 1.4 2.8 2 1 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm Syntaxin-6_N PF09177.11 gi|312136392|ref|YP_004003729.1| - 0.056 14.0 2.8 0.25 11.9 0.2 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Cob_adeno_trans PF01923.18 gi|312136392|ref|YP_004003729.1| - 0.06 13.5 2.6 0.088 12.9 0.6 1.9 1 1 1 2 2 2 0 Cobalamin adenosyltransferase TPR_MLP1_2 PF07926.12 gi|312136392|ref|YP_004003729.1| - 0.068 13.2 10.0 0.036 14.1 2.3 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|312136392|ref|YP_004003729.1| - 0.078 11.9 11.4 0.036 13.0 2.7 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein SseC PF04888.12 gi|312136392|ref|YP_004003729.1| - 0.079 12.5 7.0 0.071 12.7 0.4 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Golgin_A5 PF09787.9 gi|312136392|ref|YP_004003729.1| - 0.08 12.4 8.1 0.3 10.5 0.7 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 WXG100 PF06013.12 gi|312136392|ref|YP_004003729.1| - 0.096 12.9 2.7 3.7 7.9 0.3 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG HAUS6_N PF14661.6 gi|312136392|ref|YP_004003729.1| - 0.1 12.2 4.3 0.82 9.2 0.5 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF16 PF01519.16 gi|312136392|ref|YP_004003729.1| - 0.11 13.0 9.1 0.84 10.2 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 MbeD_MobD PF04899.12 gi|312136392|ref|YP_004003729.1| - 0.11 12.6 1.8 0.19 11.9 0.4 2.0 2 0 0 2 2 1 0 MbeD/MobD like Mod_r PF07200.13 gi|312136392|ref|YP_004003729.1| - 0.13 12.4 8.0 0.41 10.7 0.9 2.0 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein RasGAP_C PF03836.15 gi|312136392|ref|YP_004003729.1| - 0.13 12.4 7.7 2.1 8.5 1.4 2.4 2 0 0 2 2 2 0 RasGAP C-terminus Tup_N PF08581.10 gi|312136392|ref|YP_004003729.1| - 0.14 12.5 8.6 0.14 12.5 1.0 2.6 2 1 0 2 2 2 0 Tup N-terminal Sec34 PF04136.15 gi|312136392|ref|YP_004003729.1| - 0.16 11.9 5.2 1.4 8.8 0.7 2.1 2 0 0 2 2 2 0 Sec34-like family SKA1 PF07160.12 gi|312136392|ref|YP_004003729.1| - 0.16 11.8 7.9 0.074 12.9 1.0 2.0 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Med9 PF07544.13 gi|312136392|ref|YP_004003729.1| - 0.16 12.1 8.9 4.2 7.5 3.4 2.5 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Spc24 PF08286.11 gi|312136392|ref|YP_004003729.1| - 0.16 12.2 7.1 0.21 11.8 3.1 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Seryl_tRNA_N PF02403.22 gi|312136392|ref|YP_004003729.1| - 0.18 12.1 13.8 0.082 13.1 5.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain APG17 PF04108.12 gi|312136392|ref|YP_004003729.1| - 0.19 10.8 10.5 0.37 9.9 1.9 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 PAM2 PF07145.15 gi|312136392|ref|YP_004003729.1| - 0.19 11.5 0.1 1 9.2 0.0 2.1 2 0 0 2 2 2 0 Ataxin-2 C-terminal region DNA_primase_lrg PF04104.14 gi|312136392|ref|YP_004003729.1| - 0.2 11.1 2.7 0.54 9.6 0.3 2.0 2 0 0 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit Syntaxin_2 PF14523.6 gi|312136392|ref|YP_004003729.1| - 0.22 11.9 7.0 0.24 11.8 2.9 2.3 2 0 0 2 2 2 0 Syntaxin-like protein PhaP_Bmeg PF09602.10 gi|312136392|ref|YP_004003729.1| - 0.23 11.4 6.4 0.5 10.3 0.6 2.3 2 0 0 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) OmpH PF03938.14 gi|312136392|ref|YP_004003729.1| - 0.23 11.8 11.5 11 6.3 11.6 2.1 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Prominin PF05478.11 gi|312136392|ref|YP_004003729.1| - 0.23 9.4 5.9 0.088 10.8 2.0 1.6 1 1 0 1 1 1 0 Prominin COG5 PF10392.9 gi|312136392|ref|YP_004003729.1| - 0.24 11.6 4.5 0.11 12.7 0.9 2.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 SlyX PF04102.12 gi|312136392|ref|YP_004003729.1| - 0.26 11.9 7.4 1.2 9.8 0.5 2.3 2 0 0 2 2 2 0 SlyX CdvA PF18822.1 gi|312136392|ref|YP_004003729.1| - 0.27 11.0 15.4 1.2 9.0 0.5 3.1 2 2 1 3 3 3 0 CdvA-like coiled-coil domain YabA PF06156.13 gi|312136392|ref|YP_004003729.1| - 0.31 11.7 6.1 0.73 10.5 0.9 2.2 2 0 0 2 2 2 0 Initiation control protein YabA T3SchapCesA PF11439.8 gi|312136392|ref|YP_004003729.1| - 0.34 11.1 7.7 0.83 9.8 0.2 2.8 2 2 1 3 3 3 0 Type III secretion system filament chaperone CesA Fib_alpha PF08702.10 gi|312136392|ref|YP_004003729.1| - 0.39 10.9 6.3 0.59 10.3 0.8 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Tweety PF04906.13 gi|312136392|ref|YP_004003729.1| - 0.52 8.9 2.7 6.7 5.3 0.3 2.0 2 0 0 2 2 2 0 Tweety KxDL PF10241.9 gi|312136392|ref|YP_004003729.1| - 0.58 10.5 8.0 4.4 7.6 2.2 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein MerR-DNA-bind PF09278.11 gi|312136392|ref|YP_004003729.1| - 0.58 10.7 9.0 0.83 10.2 1.9 2.8 2 2 0 2 2 2 0 MerR, DNA binding CENP-H PF05837.12 gi|312136392|ref|YP_004003729.1| - 0.59 10.6 8.6 3.6 8.0 3.2 2.4 2 1 0 2 2 2 0 Centromere protein H (CENP-H) Macoilin PF09726.9 gi|312136392|ref|YP_004003729.1| - 0.59 8.6 8.4 0.016 13.8 2.1 1.5 2 0 0 2 2 2 0 Macoilin family bZIP_Maf PF03131.17 gi|312136392|ref|YP_004003729.1| - 0.62 10.6 5.9 0.65 10.6 2.2 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF5320 PF17253.2 gi|312136392|ref|YP_004003729.1| - 0.74 10.9 5.4 5.3 8.2 0.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5320) TraF_2 PF13729.6 gi|312136392|ref|YP_004003729.1| - 0.75 9.1 2.7 9.5 5.5 0.1 1.9 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein FlxA PF14282.6 gi|312136392|ref|YP_004003729.1| - 0.85 9.6 12.9 2.7 8.0 3.1 2.3 2 0 0 2 2 2 0 FlxA-like protein SKA2 PF16740.5 gi|312136392|ref|YP_004003729.1| - 0.96 9.3 7.1 1.2 8.9 1.8 2.5 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF2730 PF10805.8 gi|312136392|ref|YP_004003729.1| - 0.97 9.6 8.3 0.57 10.3 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF3450 PF11932.8 gi|312136392|ref|YP_004003729.1| - 1 8.6 8.5 0.38 10.0 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) ATP-synt_D PF01813.17 gi|312136392|ref|YP_004003729.1| - 1.1 9.1 10.0 0.37 10.6 3.8 2.1 2 0 0 2 2 2 0 ATP synthase subunit D MCU PF04678.13 gi|312136392|ref|YP_004003729.1| - 1.3 9.1 5.1 4.1 7.5 5.1 1.8 1 1 0 1 1 1 0 Mitochondrial calcium uniporter Sas10_Utp3 PF04000.15 gi|312136392|ref|YP_004003729.1| - 1.3 9.7 6.6 51 4.6 3.4 3.4 2 2 0 2 2 2 0 Sas10/Utp3/C1D family Cep57_MT_bd PF06657.13 gi|312136392|ref|YP_004003729.1| - 1.3 9.5 9.5 0.22 12.0 2.2 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 CASP_C PF08172.12 gi|312136392|ref|YP_004003729.1| - 1.6 8.1 8.3 0.17 11.2 3.4 1.7 2 0 0 2 2 2 0 CASP C terminal COG2 PF06148.11 gi|312136392|ref|YP_004003729.1| - 1.6 8.8 6.8 4.5 7.4 2.2 2.7 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 BST2 PF16716.5 gi|312136392|ref|YP_004003729.1| - 1.7 9.3 7.6 0.56 10.8 1.8 2.3 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 DUF3713 PF12506.8 gi|312136392|ref|YP_004003729.1| - 1.7 8.9 6.7 7.2 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3713) DUF2175 PF09943.9 gi|312136392|ref|YP_004003729.1| - 1.8 8.9 5.7 1 9.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) Osmo_CC PF08946.10 gi|312136392|ref|YP_004003729.1| - 2.1 8.6 11.2 3.4 8.0 1.3 3.2 2 2 0 2 2 2 0 Osmosensory transporter coiled coil DUF4446 PF14584.6 gi|312136392|ref|YP_004003729.1| - 2.4 8.2 8.9 2 8.4 2.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) Fmp27_WPPW PF10359.9 gi|312136392|ref|YP_004003729.1| - 2.7 6.7 8.2 2.1 7.1 2.6 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain TssO PF17561.2 gi|312136392|ref|YP_004003729.1| - 3 8.0 11.0 3.6 7.7 1.9 2.5 2 1 0 2 2 2 0 Type VI secretion system, TssO YojJ PF10372.9 gi|312136392|ref|YP_004003729.1| - 3 8.0 6.6 2.2 8.4 0.4 2.7 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus FapA PF03961.13 gi|312136392|ref|YP_004003729.1| - 3 6.3 12.8 0.32 9.5 4.2 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A ThylakoidFormat PF11264.8 gi|312136392|ref|YP_004003729.1| - 3.2 7.4 7.8 0.33 10.6 0.7 2.0 2 0 0 2 2 2 0 Thylakoid formation protein UPF0449 PF15136.6 gi|312136392|ref|YP_004003729.1| - 3.6 8.1 8.4 1.5 9.4 1.9 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 ACCA PF03255.14 gi|312136392|ref|YP_004003729.1| - 6.8 6.6 8.1 1.9 8.4 1.3 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TMPIT PF07851.13 gi|312136392|ref|YP_004003729.1| - 8.9 5.5 9.2 3.3 6.9 3.8 2.0 1 1 0 2 2 2 0 TMPIT-like protein Ribosomal_L18A PF01775.17 gi|312136393|ref|YP_004003730.1| - 2.2e-12 47.1 0.3 2.7e-12 46.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A GCR1_C PF12550.8 gi|312136393|ref|YP_004003730.1| - 0.053 13.8 0.8 0.064 13.6 0.8 1.3 1 1 0 1 1 1 0 Transcriptional activator of glycolytic enzymes eIF-6 PF01912.18 gi|312136394|ref|YP_004003731.1| - 1.9e-67 226.5 7.9 3.1e-67 225.8 7.0 1.6 1 1 1 2 2 2 2 eIF-6 family Ribosomal_L31e PF01198.19 gi|312136395|ref|YP_004003732.1| - 2e-16 60.0 2.2 2.3e-16 59.8 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|312136396|ref|YP_004003733.1| - 1.3e-20 72.7 14.8 1.6e-20 72.4 14.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.21 gi|312136397|ref|YP_004003734.1| - 9.1e-07 28.9 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|312136397|ref|YP_004003734.1| - 9.8e-06 25.2 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF5461 PF17545.2 gi|312136397|ref|YP_004003734.1| - 0.0007 19.8 0.3 0.0035 17.6 0.0 2.1 2 0 0 2 2 2 1 Family of unknown function (DUF5461) ATP_bind_3 PF01171.20 gi|312136397|ref|YP_004003734.1| - 0.022 14.5 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.16 gi|312136397|ref|YP_004003734.1| - 0.029 13.2 0.1 0.051 12.4 0.1 1.5 1 1 0 1 1 1 0 tRNA methyl transferase DUF61 PF01886.16 gi|312136397|ref|YP_004003734.1| - 0.037 14.1 0.1 0.079 13.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF61 Diphthami_syn_2 PF01902.17 gi|312136397|ref|YP_004003734.1| - 0.055 13.0 2.1 0.38 10.2 0.1 2.4 1 1 0 2 2 2 0 Diphthamide synthase dsDNA_bind PF01984.20 gi|312136398|ref|YP_004003735.1| - 1.7e-24 86.2 20.3 1.9e-24 86.1 20.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain HDV_ag PF01517.18 gi|312136398|ref|YP_004003735.1| - 0.76 9.5 10.9 0.037 13.8 3.8 1.9 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen YlqD PF11068.8 gi|312136398|ref|YP_004003735.1| - 3.8 7.9 12.8 2.3 8.6 6.0 2.2 1 1 1 2 2 2 0 YlqD protein Ribosomal_S19e PF01090.19 gi|312136399|ref|YP_004003736.1| - 4.2e-59 198.2 0.0 4.7e-59 198.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|312136399|ref|YP_004003736.1| - 9.9e-05 22.1 0.0 0.0037 17.1 0.0 2.2 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|312136399|ref|YP_004003736.1| - 0.0046 16.9 0.0 0.0077 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix KH_7 PF17214.3 gi|312136399|ref|YP_004003736.1| - 0.12 12.4 0.0 4.5 7.3 0.0 2.3 2 0 0 2 2 2 0 KH domain HTH_12 PF08461.10 gi|312136399|ref|YP_004003736.1| - 0.15 12.1 0.9 0.45 10.5 0.1 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain AAA_assoc_C PF09821.9 gi|312136399|ref|YP_004003736.1| - 0.15 12.6 0.0 0.3 11.6 0.0 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain DUF3409 PF11889.8 gi|312136399|ref|YP_004003736.1| - 0.18 11.8 2.1 6.7 6.7 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3409) CRS1_YhbY PF01985.21 gi|312136400|ref|YP_004003737.1| - 6e-14 52.0 2.7 7.1e-14 51.7 2.7 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CUT PF02376.15 gi|312136400|ref|YP_004003737.1| - 0.0033 17.5 0.0 0.0045 17.1 0.0 1.2 1 0 0 1 1 1 1 CUT domain ProRS-C_2 PF09181.10 gi|312136400|ref|YP_004003737.1| - 0.0055 16.8 0.1 0.0077 16.3 0.1 1.3 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Rpr2 PF04032.16 gi|312136401|ref|YP_004003738.1| - 3.2e-16 59.4 0.1 3.2e-16 59.4 0.1 1.4 2 0 0 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|312136401|ref|YP_004003738.1| - 0.023 14.7 0.2 0.036 14.1 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|312136401|ref|YP_004003738.1| - 0.035 14.0 0.5 0.064 13.1 0.5 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.6 gi|312136401|ref|YP_004003738.1| - 0.12 12.3 0.2 0.12 12.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|312136401|ref|YP_004003738.1| - 0.24 11.0 0.0 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding AAA_18 PF13238.6 gi|312136402|ref|YP_004003739.1| - 2.3e-27 96.1 0.3 3e-27 95.7 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|312136402|ref|YP_004003739.1| - 5.4e-07 30.1 0.1 1.6e-06 28.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|312136402|ref|YP_004003739.1| - 1.9e-06 28.3 0.1 3.4e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|312136402|ref|YP_004003739.1| - 1.1e-05 25.6 0.1 0.0019 18.3 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase AAA_33 PF13671.6 gi|312136402|ref|YP_004003739.1| - 1.2e-05 25.5 0.1 0.00027 21.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|312136402|ref|YP_004003739.1| - 9.2e-05 22.4 0.9 0.076 12.9 0.2 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|312136402|ref|YP_004003739.1| - 0.00017 21.8 0.1 0.0019 18.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|312136402|ref|YP_004003739.1| - 0.00021 21.3 1.1 0.00041 20.3 0.5 1.7 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|312136402|ref|YP_004003739.1| - 0.00026 21.3 0.1 0.0013 19.1 0.1 1.9 1 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|312136402|ref|YP_004003739.1| - 0.00059 19.6 0.1 0.081 12.6 0.1 2.3 2 1 0 2 2 2 1 Thymidylate kinase AAA_14 PF13173.6 gi|312136402|ref|YP_004003739.1| - 0.00062 19.8 0.2 0.0014 18.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|312136402|ref|YP_004003739.1| - 0.00088 18.7 0.1 0.0028 17.0 0.1 1.8 1 1 1 2 2 2 1 KaiC RNA_helicase PF00910.22 gi|312136402|ref|YP_004003739.1| - 0.001 19.4 0.1 0.0024 18.2 0.1 1.7 1 1 0 1 1 1 1 RNA helicase Cytidylate_kin PF02224.18 gi|312136402|ref|YP_004003739.1| - 0.0012 18.7 0.0 0.026 14.3 0.0 2.2 2 0 0 2 2 2 1 Cytidylate kinase RuvB_N PF05496.12 gi|312136402|ref|YP_004003739.1| - 0.0019 18.0 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain KTI12 PF08433.10 gi|312136402|ref|YP_004003739.1| - 0.0019 17.7 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|312136402|ref|YP_004003739.1| - 0.0021 18.1 0.2 0.0048 16.9 0.2 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|312136402|ref|YP_004003739.1| - 0.0023 17.9 0.2 0.0073 16.2 0.1 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain APS_kinase PF01583.20 gi|312136402|ref|YP_004003739.1| - 0.0044 16.9 0.1 0.0073 16.2 0.1 1.5 1 1 0 1 1 1 1 Adenylylsulphate kinase AAA_26 PF13500.6 gi|312136402|ref|YP_004003739.1| - 0.0048 16.7 2.0 0.068 13.0 0.5 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|312136402|ref|YP_004003739.1| - 0.0055 17.1 0.1 0.0091 16.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Hydin_ADK PF17213.3 gi|312136402|ref|YP_004003739.1| - 0.0063 16.8 0.1 0.021 15.1 0.0 1.8 1 1 1 2 2 2 1 Hydin Adenylate kinase-like domain ArsA_ATPase PF02374.15 gi|312136402|ref|YP_004003739.1| - 0.0087 15.3 1.7 0.02 14.1 0.8 2.0 1 1 1 2 2 2 1 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|312136402|ref|YP_004003739.1| - 0.01 15.1 0.2 0.026 13.8 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_3 PF07726.11 gi|312136402|ref|YP_004003739.1| - 0.012 15.5 0.1 0.073 12.9 0.1 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|312136402|ref|YP_004003739.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ADK PF00406.22 gi|312136402|ref|YP_004003739.1| - 0.018 15.2 0.1 0.7 10.0 0.0 2.5 1 1 1 3 3 3 0 Adenylate kinase AAA_24 PF13479.6 gi|312136402|ref|YP_004003739.1| - 0.019 14.7 0.3 0.034 13.9 0.3 1.4 1 1 0 1 1 1 0 AAA domain Mur_ligase_M PF08245.12 gi|312136402|ref|YP_004003739.1| - 0.02 14.9 0.2 0.032 14.2 0.2 1.3 1 1 0 1 1 1 0 Mur ligase middle domain MMR_HSR1 PF01926.23 gi|312136402|ref|YP_004003739.1| - 0.035 14.2 0.4 0.05 13.7 0.4 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase Ribosomal_L11_N PF03946.14 gi|312136402|ref|YP_004003739.1| - 0.048 13.5 0.1 2.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L11, N-terminal domain Sigma54_activ_2 PF14532.6 gi|312136402|ref|YP_004003739.1| - 0.053 13.6 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain KdpD PF02702.17 gi|312136402|ref|YP_004003739.1| - 0.066 12.7 0.1 5.3 6.4 0.0 2.6 2 1 1 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain ABC_tran PF00005.27 gi|312136402|ref|YP_004003739.1| - 0.09 13.3 0.6 0.13 12.8 0.6 1.4 1 1 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|312136402|ref|YP_004003739.1| - 0.092 12.7 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Ploopntkinase3 PF18751.1 gi|312136402|ref|YP_004003739.1| - 0.16 11.9 0.0 0.52 10.2 0.0 1.8 1 1 0 2 2 2 0 P-loop Nucleotide Kinase3 CbiA PF01656.23 gi|312136402|ref|YP_004003739.1| - 0.49 10.5 2.4 0.68 10.0 2.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Thi4 PF01946.17 gi|312136403|ref|YP_004003740.1| - 5.3e-88 294.2 3.0 6.1e-88 294.0 3.0 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|312136403|ref|YP_004003740.1| - 3.3e-09 36.6 0.9 6.1e-09 35.7 0.3 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|312136403|ref|YP_004003740.1| - 4e-09 36.1 5.8 0.00025 20.3 2.0 3.0 2 1 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|312136403|ref|YP_004003740.1| - 7.1e-08 32.6 2.1 1.8e-07 31.2 2.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|312136403|ref|YP_004003740.1| - 8.9e-08 32.1 3.9 4.4e-05 23.2 2.3 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|312136403|ref|YP_004003740.1| - 3e-05 23.4 0.4 4.2e-05 22.9 0.3 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|312136403|ref|YP_004003740.1| - 0.00066 19.0 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|312136403|ref|YP_004003740.1| - 0.00097 17.9 1.7 0.0014 17.4 0.6 1.7 1 1 1 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|312136403|ref|YP_004003740.1| - 0.0075 15.6 0.1 0.044 13.1 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|312136403|ref|YP_004003740.1| - 0.011 14.9 0.7 0.011 14.9 0.7 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|312136403|ref|YP_004003740.1| - 0.036 14.0 0.1 0.15 12.0 0.7 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|312136403|ref|YP_004003740.1| - 0.13 12.8 1.8 0.51 10.9 0.2 2.6 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|312136403|ref|YP_004003740.1| - 0.23 10.3 0.7 1.2 7.9 0.4 1.9 2 0 0 2 2 2 0 Tryptophan halogenase MMR_HSR1_Xtn PF16897.5 gi|312136404|ref|YP_004003741.1| - 6.5e-35 119.4 2.8 1.3e-34 118.4 2.8 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|312136404|ref|YP_004003741.1| - 4.3e-25 88.0 0.5 1.5e-24 86.3 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|312136404|ref|YP_004003741.1| - 6.2e-23 80.6 0.0 1.3e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|312136404|ref|YP_004003741.1| - 1.6e-16 60.2 2.6 3.1e-16 59.3 0.2 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|312136404|ref|YP_004003741.1| - 6.9e-07 29.3 2.6 0.002 18.1 0.2 2.4 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|312136404|ref|YP_004003741.1| - 3.9e-05 23.8 0.4 0.26 11.3 0.2 2.9 2 1 1 3 3 3 2 Dynamin family Arf PF00025.21 gi|312136404|ref|YP_004003741.1| - 0.00011 21.8 0.6 0.0011 18.5 0.1 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family Roc PF08477.13 gi|312136404|ref|YP_004003741.1| - 0.0015 18.7 0.2 0.054 13.7 0.0 2.5 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|312136404|ref|YP_004003741.1| - 0.0018 17.9 0.9 0.4 10.2 0.1 3.2 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|312136404|ref|YP_004003741.1| - 0.0026 17.6 0.3 1.3 8.7 0.1 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|312136404|ref|YP_004003741.1| - 0.0034 16.4 0.3 0.011 14.7 0.1 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 gi|312136404|ref|YP_004003741.1| - 0.0036 16.8 0.0 0.0069 15.8 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|312136404|ref|YP_004003741.1| - 0.015 14.6 0.1 0.029 13.7 0.1 1.4 1 0 0 1 1 1 0 AIG1 family Ras PF00071.22 gi|312136404|ref|YP_004003741.1| - 0.015 14.9 1.0 0.69 9.5 0.0 2.5 2 0 0 2 2 2 0 Ras family AAA_28 PF13521.6 gi|312136404|ref|YP_004003741.1| - 0.029 14.6 0.1 0.061 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|312136404|ref|YP_004003741.1| - 0.041 13.1 0.0 0.14 11.3 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain MnmE_helical PF12631.7 gi|312136404|ref|YP_004003741.1| - 0.057 13.6 0.0 0.078 13.1 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain AAA_16 PF13191.6 gi|312136404|ref|YP_004003741.1| - 0.061 13.7 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|312136404|ref|YP_004003741.1| - 0.1 12.0 0.4 0.26 10.7 0.0 1.8 2 1 0 2 2 2 0 Chromatin associated protein KTI12 MCM PF00493.23 gi|312136404|ref|YP_004003741.1| - 0.1 11.7 1.2 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 MCM P-loop domain RTT107_BRCT_6 PF16771.5 gi|312136404|ref|YP_004003741.1| - 0.24 11.6 2.4 0.68 10.1 2.4 1.8 1 1 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain GTP_EFTU PF00009.27 gi|312136404|ref|YP_004003741.1| - 0.25 10.8 5.6 9.9 5.6 0.5 3.7 2 2 1 3 3 3 0 Elongation factor Tu GTP binding domain STT3 PF02516.14 gi|312136405|ref|YP_004003742.1| - 4e-105 352.5 26.0 5e-105 352.2 26.0 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|312136405|ref|YP_004003742.1| - 0.0094 16.2 24.3 0.0094 16.2 24.3 3.9 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase YL1_C PF08265.11 gi|312136405|ref|YP_004003742.1| - 0.09 12.6 0.6 0.18 11.6 0.6 1.5 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain DUF2681 PF10883.8 gi|312136405|ref|YP_004003742.1| - 0.12 12.8 2.2 6.2 7.3 0.3 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) Topoisom_bac PF01131.20 gi|312136406|ref|YP_004003743.1| - 3.3e-121 405.2 5.3 3.3e-121 405.2 5.3 1.6 2 0 0 2 2 2 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|312136406|ref|YP_004003743.1| - 5.2e-23 80.6 30.9 2.7e-15 55.8 5.3 3.7 3 1 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|312136406|ref|YP_004003743.1| - 4.7e-15 55.7 0.2 4.7e-15 55.7 0.2 3.3 4 0 0 4 4 4 1 Toprim domain RNA_POL_M_15KD PF02150.16 gi|312136406|ref|YP_004003743.1| - 0.015 15.1 0.3 0.015 15.1 0.3 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|312136406|ref|YP_004003743.1| - 0.036 14.1 2.3 0.14 12.2 2.3 2.0 1 1 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.14 gi|312136406|ref|YP_004003743.1| - 0.04 13.9 11.2 5.1 7.2 0.8 3.7 3 0 0 3 3 3 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 gi|312136406|ref|YP_004003743.1| - 0.13 12.0 8.6 0.11 12.2 3.1 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|312136406|ref|YP_004003743.1| - 0.19 11.2 6.2 0.67 9.4 2.4 3.1 2 1 1 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|312136406|ref|YP_004003743.1| - 0.8 9.7 3.7 27 4.9 0.4 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger IBR PF01485.21 gi|312136406|ref|YP_004003743.1| - 5 7.4 9.3 0.49 10.7 0.5 2.8 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain A2L_zn_ribbon PF08792.10 gi|312136406|ref|YP_004003743.1| - 5.3 6.9 7.0 13 5.7 0.3 3.4 3 0 0 3 3 3 0 A2L zinc ribbon domain HAD PF12710.7 gi|312136407|ref|YP_004003744.1| - 7.2e-21 75.4 0.0 1.9e-20 74.1 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|312136407|ref|YP_004003744.1| - 2.2e-17 64.1 0.2 2.2e-17 64.1 0.2 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|312136407|ref|YP_004003744.1| - 7.5e-11 42.2 0.2 7.5e-11 42.2 0.2 4.8 3 1 2 5 5 5 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|312136407|ref|YP_004003744.1| - 2.3e-06 27.8 2.8 2.3e-06 27.8 2.8 4.8 2 2 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Syntaxin_2 PF14523.6 gi|312136407|ref|YP_004003744.1| - 0.0015 18.8 10.8 0.0015 18.8 10.8 4.7 3 2 2 5 5 5 1 Syntaxin-like protein B12-binding PF02310.19 gi|312136407|ref|YP_004003744.1| - 0.023 14.8 0.0 0.061 13.4 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain Hydrolase_6 PF13344.6 gi|312136407|ref|YP_004003744.1| - 0.031 14.4 1.1 0.46 10.6 0.0 3.2 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Alanine_zipper PF11839.8 gi|312136407|ref|YP_004003744.1| - 0.52 10.7 5.6 8.8 6.8 0.7 3.0 1 1 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein EspB PF05802.11 gi|312136407|ref|YP_004003744.1| - 6.1 6.8 8.0 23 4.9 6.0 2.9 2 1 0 2 2 2 0 Enterobacterial EspB protein TBP PF00352.21 gi|312136408|ref|YP_004003745.1| - 6.8e-59 195.8 0.1 9.6e-30 102.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|312136408|ref|YP_004003745.1| - 6.8e-07 29.3 0.0 0.02 15.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) YbbR PF07949.12 gi|312136408|ref|YP_004003745.1| - 0.0071 16.7 0.8 0.7 10.3 0.2 2.4 2 0 0 2 2 2 2 YbbR-like protein Bromodomain PF00439.25 gi|312136408|ref|YP_004003745.1| - 0.038 14.1 0.3 11 6.1 0.1 2.3 1 1 0 2 2 2 0 Bromodomain DUF1837 PF08878.11 gi|312136408|ref|YP_004003745.1| - 0.055 13.3 0.0 0.077 12.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1837) tRNA_anti-codon PF01336.25 gi|312136409|ref|YP_004003746.1| - 2e-49 165.5 26.9 6.7e-12 45.2 0.2 6.9 7 0 0 7 7 7 6 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|312136409|ref|YP_004003746.1| - 2e-27 96.4 3.0 3e-06 27.1 0.0 5.9 5 1 0 5 5 5 5 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|312136409|ref|YP_004003746.1| - 2.2e-14 53.2 17.3 0.001 18.9 0.7 5.6 5 0 0 5 5 5 5 Replication protein A OB domain Rep_fac-A_C PF08646.10 gi|312136409|ref|YP_004003746.1| - 7.2e-09 35.5 0.0 7.1e-06 25.8 0.0 4.1 4 0 0 4 4 4 1 Replication factor-A C terminal domain tRNA_anti_2 PF13742.6 gi|312136409|ref|YP_004003746.1| - 2.6e-05 24.3 0.1 4.6 7.5 0.0 5.2 4 1 0 4 4 4 1 OB-fold nucleic acid binding domain DUF5088 PF17008.5 gi|312136409|ref|YP_004003746.1| - 0.0014 18.3 0.0 0.0014 18.3 0.0 3.6 4 0 0 4 4 4 1 Domain of unknown function (DUF5088) DUF4539 PF15072.6 gi|312136409|ref|YP_004003746.1| - 0.0049 16.9 0.1 7.1 6.7 0.0 4.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4539) zinc_ribbon_2 PF13240.6 gi|312136409|ref|YP_004003746.1| - 0.024 14.3 2.0 0.051 13.3 2.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain POT1PC PF16686.5 gi|312136409|ref|YP_004003746.1| - 0.025 14.4 0.3 47 3.8 0.0 3.8 4 0 0 4 4 4 0 ssDNA-binding domain of telomere protection protein DZR PF12773.7 gi|312136409|ref|YP_004003746.1| - 0.039 14.0 0.1 0.072 13.1 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|312136409|ref|YP_004003746.1| - 0.14 12.2 0.3 0.25 11.3 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|312136409|ref|YP_004003746.1| - 0.14 11.7 3.2 0.32 10.5 3.2 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|312136409|ref|YP_004003746.1| - 1.5 8.3 3.2 5.4 6.6 3.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|312136409|ref|YP_004003746.1| - 2.3 8.3 4.7 2.3 8.2 0.7 2.4 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger eIF-5a PF01287.20 gi|312136409|ref|YP_004003746.1| - 2.7 8.1 11.0 3.6 7.8 2.1 4.0 3 0 0 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Rad51 PF08423.11 gi|312136410|ref|YP_004003747.1| - 1.2e-94 316.4 0.2 1.4e-94 316.1 0.2 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|312136410|ref|YP_004003747.1| - 6.7e-14 52.0 0.5 9.1e-14 51.6 0.5 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|312136410|ref|YP_004003747.1| - 2.4e-11 43.4 0.2 3.9e-11 42.7 0.2 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|312136410|ref|YP_004003747.1| - 9.5e-09 35.1 0.1 2.5e-08 33.7 0.1 1.6 1 1 1 2 2 2 1 AAA domain HHH_5 PF14520.6 gi|312136410|ref|YP_004003747.1| - 2.7e-08 34.3 1.3 7.2e-08 32.9 1.3 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|312136410|ref|YP_004003747.1| - 2e-06 27.8 2.5 3.6e-06 27.0 0.2 2.5 3 0 0 3 3 2 1 Helix-hairpin-helix motif AAA_22 PF13401.6 gi|312136410|ref|YP_004003747.1| - 1.6e-05 25.2 0.2 2.7e-05 24.4 0.2 1.3 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|312136410|ref|YP_004003747.1| - 5.8e-05 23.3 0.0 0.00013 22.2 0.0 1.6 1 1 0 1 1 1 1 Pathogenicity locus CobU PF02283.16 gi|312136410|ref|YP_004003747.1| - 0.00017 21.2 0.6 0.0014 18.2 0.3 2.3 2 1 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_24 PF13479.6 gi|312136410|ref|YP_004003747.1| - 0.00039 20.2 0.1 0.0014 18.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|312136410|ref|YP_004003747.1| - 0.0068 15.6 1.3 0.39 9.8 0.1 2.1 2 0 0 2 2 2 1 PAXNEB protein AAA_18 PF13238.6 gi|312136410|ref|YP_004003747.1| - 0.0073 16.8 0.0 0.013 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|312136410|ref|YP_004003747.1| - 0.035 14.0 0.8 1.1 9.3 0.0 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix motif AAA PF00004.29 gi|312136410|ref|YP_004003747.1| - 0.043 14.2 0.4 0.14 12.6 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HHH_8 PF14716.6 gi|312136410|ref|YP_004003747.1| - 0.061 13.7 1.1 5.6 7.4 0.0 3.4 2 1 1 3 3 3 0 Helix-hairpin-helix domain GvpD PF07088.11 gi|312136410|ref|YP_004003747.1| - 0.086 11.4 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein HHH_3 PF12836.7 gi|312136410|ref|YP_004003747.1| - 0.097 12.9 2.1 5.1 7.4 0.1 3.3 3 1 1 4 4 4 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|312136410|ref|YP_004003747.1| - 0.12 12.7 0.0 0.41 11.1 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|312136410|ref|YP_004003747.1| - 0.14 12.0 0.0 0.47 10.3 0.0 2.0 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Mem_trans PF03547.18 gi|312136411|ref|YP_004003748.1| - 7e-34 116.9 25.7 6.9e-20 70.8 10.1 2.0 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.16 gi|312136411|ref|YP_004003748.1| - 0.00012 21.8 7.3 0.00012 21.8 7.3 2.4 2 1 0 2 2 2 1 Sodium Bile acid symporter family DUF3995 PF13160.6 gi|312136411|ref|YP_004003748.1| - 0.055 13.8 1.8 6.7 7.1 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) Na_H_Exchanger PF00999.21 gi|312136411|ref|YP_004003748.1| - 0.26 10.0 32.7 0.23 10.2 19.9 3.4 1 1 1 2 2 2 0 Sodium/hydrogen exchanger family Pyr_redox_2 PF07992.14 gi|312136412|ref|YP_004003749.1| - 2.3e-27 96.0 0.0 1.5e-26 93.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|312136412|ref|YP_004003749.1| - 9.7e-24 82.2 40.2 4.1e-07 29.5 5.0 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136412|ref|YP_004003749.1| - 8.6e-15 55.4 22.9 0.00052 20.9 0.6 5.3 5 0 0 5 5 5 4 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|312136412|ref|YP_004003749.1| - 2.1e-13 50.6 36.8 4.9e-07 30.2 10.7 4.9 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136412|ref|YP_004003749.1| - 1.6e-12 47.4 35.0 2.2e-07 30.9 9.8 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136412|ref|YP_004003749.1| - 3.6e-12 45.8 47.3 4.8e-05 23.2 2.2 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136412|ref|YP_004003749.1| - 6.4e-12 45.4 36.4 1.2e-06 28.5 10.5 4.5 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136412|ref|YP_004003749.1| - 1.1e-11 44.1 39.8 3.7e-05 23.6 2.8 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136412|ref|YP_004003749.1| - 6.8e-11 42.1 42.2 0.00027 21.0 11.3 5.4 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136412|ref|YP_004003749.1| - 4.2e-08 33.6 27.3 0.0055 17.2 9.7 4.6 4 1 0 4 4 4 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|312136412|ref|YP_004003749.1| - 4.8e-08 32.8 0.3 1.6e-07 31.0 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|312136412|ref|YP_004003749.1| - 1.1e-07 32.2 0.5 3.3e-05 24.4 1.0 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.6 gi|312136412|ref|YP_004003749.1| - 9.7e-07 29.4 24.2 0.0056 17.4 0.4 4.8 3 1 1 4 4 4 2 4Fe-4S single cluster domain AlaDh_PNT_C PF01262.21 gi|312136412|ref|YP_004003749.1| - 1.1e-06 28.1 0.2 2.6e-06 26.9 0.0 1.6 2 0 0 2 2 1 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_8 PF13183.6 gi|312136412|ref|YP_004003749.1| - 1.5e-06 28.6 27.6 0.016 15.6 0.8 5.0 4 1 1 5 5 5 3 4Fe-4S dicluster domain DAO PF01266.24 gi|312136412|ref|YP_004003749.1| - 1.7e-06 27.9 0.1 0.0021 17.7 0.3 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|312136412|ref|YP_004003749.1| - 4.3e-06 26.9 0.0 8.9e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|312136412|ref|YP_004003749.1| - 5.4e-06 25.7 0.0 9.1e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|312136412|ref|YP_004003749.1| - 9.8e-06 24.9 0.2 1.6e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.7 gi|312136412|ref|YP_004003749.1| - 2.2e-05 24.6 32.6 0.012 16.0 1.2 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain Pyr_redox_3 PF13738.6 gi|312136412|ref|YP_004003749.1| - 4.7e-05 22.8 0.0 0.00076 18.8 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_13 PF13370.6 gi|312136412|ref|YP_004003749.1| - 0.00015 22.2 27.6 0.03 14.9 0.8 4.9 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I HI0933_like PF03486.14 gi|312136412|ref|YP_004003749.1| - 0.00038 19.3 0.9 0.00059 18.6 0.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_22 PF17179.4 gi|312136412|ref|YP_004003749.1| - 0.0015 19.3 27.3 0.036 14.9 0.1 4.8 5 0 0 5 5 4 3 4Fe-4S dicluster domain Amino_oxidase PF01593.24 gi|312136412|ref|YP_004003749.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DUF4033 PF13225.6 gi|312136412|ref|YP_004003749.1| - 0.016 15.2 0.0 0.016 15.2 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4033) NAD_binding_9 PF13454.6 gi|312136412|ref|YP_004003749.1| - 0.016 15.2 0.0 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|312136412|ref|YP_004003749.1| - 0.033 13.4 0.0 0.062 12.5 0.0 1.4 1 0 0 1 1 1 0 Thi4 family Fer4_18 PF13746.6 gi|312136412|ref|YP_004003749.1| - 0.047 13.9 27.1 0.3 11.3 5.4 4.4 3 1 0 4 4 4 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|312136412|ref|YP_004003749.1| - 0.074 12.3 0.3 0.12 11.6 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.14 gi|312136412|ref|YP_004003749.1| - 0.082 11.7 0.1 2.7 6.7 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase DUF169 PF02596.15 gi|312136413|ref|YP_004003750.1| - 1e-45 156.2 0.0 1.1e-45 156.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 SIS PF01380.22 gi|312136414|ref|YP_004003751.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 SIS domain tRNA-synt_1f PF01921.18 gi|312136415|ref|YP_004003752.1| - 3.8e-130 434.0 0.6 3.8e-130 434.0 0.6 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|312136415|ref|YP_004003752.1| - 8e-06 24.8 0.0 0.00016 20.6 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|312136415|ref|YP_004003752.1| - 0.04 13.3 0.1 2.3 7.5 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain HTH_21 PF13276.6 gi|312136415|ref|YP_004003752.1| - 0.097 12.8 0.3 0.55 10.4 0.0 2.2 2 0 0 2 2 2 0 HTH-like domain DUF1993 PF09351.10 gi|312136415|ref|YP_004003752.1| - 0.12 12.5 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) Glyco_transf_28 PF03033.20 gi|312136415|ref|YP_004003752.1| - 0.15 12.1 0.1 1.1 9.2 0.0 2.5 3 0 0 3 3 3 0 Glycosyltransferase family 28 N-terminal domain PS_pyruv_trans PF04230.13 gi|312136415|ref|YP_004003752.1| - 0.23 11.3 1.9 0.45 10.4 0.1 2.3 2 1 0 2 2 2 0 Polysaccharide pyruvyl transferase HBS1_N PF08938.10 gi|312136415|ref|YP_004003752.1| - 0.36 11.1 6.5 1.6 9.1 5.0 2.7 1 1 1 2 2 2 0 HBS1 N-terminus ThiC_Rad_SAM PF01964.18 gi|312136416|ref|YP_004003753.1| - 1.4e-186 620.3 3.1 1.6e-186 620.1 3.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Bep_C_terminal PF17841.1 gi|312136416|ref|YP_004003753.1| - 0.092 13.0 0.1 0.61 10.3 0.0 2.1 2 0 0 2 2 2 0 BID domain of Bartonella effector protein (Bep) PfkB PF00294.24 gi|312136417|ref|YP_004003754.1| - 3.5e-57 194.0 0.0 3.9e-57 193.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_1 PF00126.27 gi|312136418|ref|YP_004003755.1| - 1.4e-07 31.4 0.0 3e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|312136418|ref|YP_004003755.1| - 0.0015 18.0 0.0 0.0053 16.3 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF134 PF02001.16 gi|312136418|ref|YP_004003755.1| - 0.011 16.3 0.0 0.025 15.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_3 PF01381.22 gi|312136418|ref|YP_004003755.1| - 0.014 15.5 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_10 PF04967.12 gi|312136418|ref|YP_004003755.1| - 0.032 14.0 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_psq PF05225.16 gi|312136418|ref|YP_004003755.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Fe_dep_repr_C PF02742.15 gi|312136419|ref|YP_004003756.1| - 2.1e-28 98.2 0.3 6e-28 96.7 0.2 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|312136419|ref|YP_004003756.1| - 4.1e-22 78.1 0.5 8.5e-22 77.1 0.5 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|312136419|ref|YP_004003756.1| - 1.1e-10 41.6 0.1 1.7e-10 41.0 0.1 1.3 1 0 0 1 1 1 1 FeoA domain Tctex-1 PF03645.13 gi|312136419|ref|YP_004003756.1| - 0.082 13.1 0.7 0.52 10.6 0.2 2.1 2 0 0 2 2 2 0 Tctex-1 family HTH_IclR PF09339.10 gi|312136419|ref|YP_004003756.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TAFII28 PF04719.14 gi|312136419|ref|YP_004003756.1| - 0.13 12.4 0.1 0.31 11.1 0.1 1.7 1 1 0 1 1 1 0 hTAFII28-like protein conserved region HTH_Crp_2 PF13545.6 gi|312136419|ref|YP_004003756.1| - 0.16 12.0 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PMBR PF09373.10 gi|312136420|ref|YP_004003757.1| - 1.3e-07 31.4 0.2 0.00012 22.1 0.0 2.3 2 0 0 2 2 2 2 Pseudomurein-binding repeat NTP_transf_3 PF12804.7 gi|312136421|ref|YP_004003758.1| - 2.1e-35 122.5 0.0 2.5e-35 122.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|312136421|ref|YP_004003758.1| - 2.1e-05 24.6 0.3 3.8e-05 23.7 0.3 1.5 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|312136421|ref|YP_004003758.1| - 7.3e-05 22.6 0.0 0.0001 22.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|312136421|ref|YP_004003758.1| - 0.00015 21.0 0.3 0.00018 20.7 0.3 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|312136421|ref|YP_004003758.1| - 0.046 13.3 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase IMPDH PF00478.25 gi|312136422|ref|YP_004003759.1| - 2.1e-152 507.1 7.5 2.4e-152 506.9 7.5 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|312136422|ref|YP_004003759.1| - 4.1e-31 107.2 7.4 2.3e-15 56.8 0.6 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|312136422|ref|YP_004003759.1| - 6e-12 45.6 13.7 7.7e-06 25.5 4.5 3.4 2 1 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|312136422|ref|YP_004003759.1| - 6.2e-12 45.2 6.9 1e-10 41.2 5.3 2.4 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|312136422|ref|YP_004003759.1| - 5.9e-07 28.9 2.9 5.9e-07 28.9 2.9 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|312136422|ref|YP_004003759.1| - 4.5e-05 23.0 2.1 0.00033 20.2 2.1 2.2 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|312136422|ref|YP_004003759.1| - 0.00022 20.7 1.3 0.00022 20.7 1.3 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|312136422|ref|YP_004003759.1| - 0.00084 18.5 0.1 0.0018 17.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|312136422|ref|YP_004003759.1| - 0.075 12.4 2.0 0.28 10.6 0.1 2.5 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator 4HFCP_synth PF04476.13 gi|312136423|ref|YP_004003760.1| - 1.2e-88 296.6 0.1 1.4e-88 296.5 0.1 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|312136423|ref|YP_004003760.1| - 0.00028 20.7 0.1 0.038 13.7 0.1 2.6 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain DeoC PF01791.9 gi|312136423|ref|YP_004003760.1| - 0.0048 16.5 4.2 0.088 12.4 0.4 3.0 2 1 1 3 3 3 1 DeoC/LacD family aldolase Glycos_transf_1 PF00534.20 gi|312136424|ref|YP_004003761.1| - 1.1e-38 132.5 0.2 5.3e-38 130.3 0.3 2.0 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312136424|ref|YP_004003761.1| - 9e-30 103.8 0.0 2.6e-29 102.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312136424|ref|YP_004003761.1| - 1.8e-21 76.9 0.0 2.7e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|312136424|ref|YP_004003761.1| - 8e-10 39.4 0.0 1.2e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|312136424|ref|YP_004003761.1| - 0.0055 17.1 0.0 0.019 15.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 PTS_IIB PF02302.17 gi|312136424|ref|YP_004003761.1| - 0.056 14.1 1.9 3.1 8.5 0.2 3.2 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF2304 PF10066.9 gi|312136425|ref|YP_004003762.1| - 9.3e-26 90.1 9.7 1e-25 90.0 9.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DHHC PF01529.20 gi|312136425|ref|YP_004003762.1| - 6.4 6.9 8.6 77 3.4 8.6 2.1 1 1 0 1 1 1 0 DHHC palmitoyltransferase Glycos_transf_2 PF00535.26 gi|312136426|ref|YP_004003763.1| - 3.1e-35 121.5 0.6 4.1e-35 121.1 0.6 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312136426|ref|YP_004003763.1| - 1.9e-12 47.6 0.0 2.5e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|312136426|ref|YP_004003763.1| - 5.1e-07 30.1 0.1 8e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|312136426|ref|YP_004003763.1| - 3e-06 26.9 0.1 4.7e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|312136426|ref|YP_004003763.1| - 0.0012 19.2 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_4 PF13439.6 gi|312136426|ref|YP_004003763.1| - 0.0017 18.4 0.3 0.0046 17.0 0.3 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Orthopox_F14 PF06076.12 gi|312136426|ref|YP_004003763.1| - 0.0018 18.5 0.2 0.25 11.6 0.0 2.5 2 0 0 2 2 2 1 Orthopoxvirus F14 protein PrpR_N PF06506.11 gi|312136426|ref|YP_004003763.1| - 0.0022 17.6 0.2 0.97 9.0 0.2 2.4 2 0 0 2 2 2 2 Propionate catabolism activator HAD_2 PF13419.6 gi|312136426|ref|YP_004003763.1| - 0.0047 17.0 0.3 0.43 10.6 0.0 2.9 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase CAP59_mtransfer PF11735.8 gi|312136426|ref|YP_004003763.1| - 0.013 15.2 0.1 0.022 14.4 0.1 1.4 1 1 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Fe-ADH_2 PF13685.6 gi|312136426|ref|YP_004003763.1| - 0.024 14.4 0.7 0.19 11.4 0.4 2.0 1 1 1 2 2 2 0 Iron-containing alcohol dehydrogenase TIMELESS_C PF05029.13 gi|312136426|ref|YP_004003763.1| - 0.078 12.1 0.1 0.097 11.8 0.1 1.1 1 0 0 1 1 1 0 Timeless protein C terminal region AhpC-TSA PF00578.21 gi|312136426|ref|YP_004003763.1| - 0.079 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family PGM_PMM_II PF02879.16 gi|312136426|ref|YP_004003763.1| - 0.082 13.5 0.1 22 5.7 0.1 3.1 2 1 2 4 4 4 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Glyco_transf_21 PF13506.6 gi|312136426|ref|YP_004003763.1| - 0.13 11.7 0.3 0.47 9.9 0.1 1.8 1 1 1 2 2 2 0 Glycosyl transferase family 21 FMN_red PF03358.15 gi|312136427|ref|YP_004003764.1| - 2.4e-37 128.1 0.0 2.8e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|312136427|ref|YP_004003764.1| - 3.8e-10 39.8 0.0 4.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DMRL_synthase PF00885.19 gi|312136428|ref|YP_004003765.1| - 1.8e-17 63.5 0.1 2e-17 63.3 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF4885 PF16226.5 gi|312136428|ref|YP_004003765.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4885) OmpA PF00691.20 gi|312136428|ref|YP_004003765.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 OmpA family ABC_tran PF00005.27 gi|312136429|ref|YP_004003766.1| - 2.5e-35 122.0 0.0 6.8e-35 120.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|312136429|ref|YP_004003766.1| - 1.7e-14 54.4 0.5 8.1e-09 35.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312136429|ref|YP_004003766.1| - 3.2e-10 39.8 0.1 6.2e-09 35.6 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|312136429|ref|YP_004003766.1| - 2.5e-05 24.9 0.9 5.2e-05 23.8 0.9 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|312136429|ref|YP_004003766.1| - 6.5e-05 22.8 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|312136429|ref|YP_004003766.1| - 0.00077 18.2 0.5 0.47 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|312136429|ref|YP_004003766.1| - 0.0055 16.4 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|312136429|ref|YP_004003766.1| - 0.0065 16.2 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_27 PF13514.6 gi|312136429|ref|YP_004003766.1| - 0.023 14.3 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|312136429|ref|YP_004003766.1| - 0.029 14.6 0.0 0.19 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|312136429|ref|YP_004003766.1| - 0.034 13.9 0.0 0.091 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|312136429|ref|YP_004003766.1| - 0.055 12.9 0.0 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|312136429|ref|YP_004003766.1| - 0.07 12.7 0.0 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|312136429|ref|YP_004003766.1| - 0.071 13.5 0.0 0.1 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|312136429|ref|YP_004003766.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|312136429|ref|YP_004003766.1| - 0.082 12.8 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|312136429|ref|YP_004003766.1| - 0.083 12.6 0.5 0.19 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|312136429|ref|YP_004003766.1| - 0.16 12.0 0.0 0.49 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|312136429|ref|YP_004003766.1| - 0.17 11.4 0.2 0.31 10.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0004 PF00919.20 gi|312136430|ref|YP_004003767.1| - 5.2e-27 93.8 0.1 1.2e-26 92.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|312136430|ref|YP_004003767.1| - 1.9e-23 83.7 0.3 1.9e-23 83.7 0.3 2.0 3 0 0 3 3 3 1 Radical SAM superfamily TRAM PF01938.20 gi|312136430|ref|YP_004003767.1| - 4.2e-13 49.1 1.2 8.3e-13 48.1 1.2 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|312136430|ref|YP_004003767.1| - 0.0014 18.8 1.1 0.0069 16.5 0.5 2.5 2 1 0 2 2 2 1 TRAM domain DUF659 PF04937.15 gi|312136430|ref|YP_004003767.1| - 0.033 14.1 0.0 0.1 12.5 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) PCMT PF01135.19 gi|312136431|ref|YP_004003768.1| - 1.9e-75 253.2 0.0 2.3e-75 252.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|312136431|ref|YP_004003768.1| - 1.3e-07 31.5 0.0 1.7e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|312136431|ref|YP_004003768.1| - 8.5e-07 28.4 0.0 1.4e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.17 gi|312136431|ref|YP_004003768.1| - 9.7e-07 28.1 0.1 1.6e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|312136431|ref|YP_004003768.1| - 1.3e-06 28.3 0.0 1.7e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|312136431|ref|YP_004003768.1| - 6.6e-06 25.6 0.0 9.3e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|312136431|ref|YP_004003768.1| - 9.2e-06 24.9 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|312136431|ref|YP_004003768.1| - 0.00022 21.0 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|312136431|ref|YP_004003768.1| - 0.00045 21.2 0.0 0.00069 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312136431|ref|YP_004003768.1| - 0.00046 20.8 0.0 0.00079 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|312136431|ref|YP_004003768.1| - 0.0066 16.5 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312136431|ref|YP_004003768.1| - 0.0076 15.6 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|312136431|ref|YP_004003768.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|312136431|ref|YP_004003768.1| - 0.022 14.3 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|312136431|ref|YP_004003768.1| - 0.03 15.0 0.0 0.054 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|312136431|ref|YP_004003768.1| - 0.038 13.7 0.1 0.056 13.2 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase MTS PF05175.14 gi|312136431|ref|YP_004003768.1| - 0.057 13.0 0.0 0.095 12.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Met_10 PF02475.16 gi|312136431|ref|YP_004003768.1| - 0.063 13.0 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Met-10+ like-protein POTRA PF07244.15 gi|312136431|ref|YP_004003768.1| - 0.097 13.3 0.0 0.29 11.7 0.0 1.9 2 0 0 2 2 2 0 Surface antigen variable number repeat Methyltransf_23 PF13489.6 gi|312136431|ref|YP_004003768.1| - 0.099 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UBA PF00627.31 gi|312136431|ref|YP_004003768.1| - 0.14 12.1 0.0 0.81 9.7 0.1 2.2 2 0 0 2 2 2 0 UBA/TS-N domain Zn_Tnp_IS1595 PF12760.7 gi|312136432|ref|YP_004003769.1| - 0.0016 18.4 0.9 0.0034 17.3 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|312136432|ref|YP_004003769.1| - 0.0019 17.7 1.2 0.0071 15.8 1.2 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding DUF3268 PF11672.8 gi|312136432|ref|YP_004003769.1| - 0.002 18.5 0.1 0.0041 17.4 0.1 1.5 1 1 0 1 1 1 1 zinc-finger-containing domain zf-ZPR1 PF03367.13 gi|312136432|ref|YP_004003769.1| - 0.0077 16.1 0.3 0.012 15.5 0.3 1.4 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|312136432|ref|YP_004003769.1| - 0.015 15.4 0.3 7.7 6.7 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|312136432|ref|YP_004003769.1| - 0.088 12.7 6.1 0.68 9.9 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|312136432|ref|YP_004003769.1| - 0.14 12.1 5.1 0.95 9.4 0.5 2.9 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|312136432|ref|YP_004003769.1| - 0.17 11.9 1.6 3.8 7.6 0.1 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|312136432|ref|YP_004003769.1| - 0.18 11.5 3.0 4.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|312136432|ref|YP_004003769.1| - 0.23 11.3 2.6 0.71 9.8 2.6 1.8 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) MS_channel PF00924.18 gi|312136432|ref|YP_004003769.1| - 0.3 10.6 2.0 17 4.9 0.4 2.4 2 1 0 2 2 2 0 Mechanosensitive ion channel OrfB_Zn_ribbon PF07282.11 gi|312136432|ref|YP_004003769.1| - 0.94 9.4 3.1 4.7 7.2 3.1 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|312136432|ref|YP_004003769.1| - 2 9.0 4.1 10 6.8 1.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_SprT PF17283.2 gi|312136432|ref|YP_004003769.1| - 4.1 7.4 5.9 28 4.7 5.9 2.2 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Aconitase_C PF00694.19 gi|312136433|ref|YP_004003770.1| - 3e-22 79.4 0.2 5.1e-21 75.4 0.2 2.2 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|312136433|ref|YP_004003770.1| - 0.00014 21.6 0.3 0.0031 17.2 0.3 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus GHMP_kinases_C PF08544.13 gi|312136434|ref|YP_004003771.1| - 2.8e-11 43.6 0.0 4.9e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|312136434|ref|YP_004003771.1| - 9.3e-08 32.2 0.5 1.9e-07 31.2 0.5 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Radical_SAM PF04055.21 gi|312136435|ref|YP_004003772.1| - 1.5e-20 74.3 0.0 1.5e-20 74.3 0.0 2.0 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136435|ref|YP_004003772.1| - 2.1e-07 31.3 0.0 4.6e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312136435|ref|YP_004003772.1| - 3.8e-06 27.0 0.0 1.6e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain CarS-like PF01864.17 gi|312136436|ref|YP_004003773.1| - 2.1e-62 210.2 11.7 2.8e-62 209.8 11.7 1.1 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|312136436|ref|YP_004003773.1| - 0.00022 21.1 2.9 0.00022 21.1 2.9 2.1 2 0 0 2 2 2 1 Cytidylyltransferase family E2 PF08199.11 gi|312136436|ref|YP_004003773.1| - 0.099 12.6 1.6 0.14 12.2 0.2 1.9 2 0 0 2 2 2 0 Bacteriophage E2-like protein Gly-zipper_YMGG PF13441.6 gi|312136436|ref|YP_004003773.1| - 0.14 12.0 1.3 1.7 8.4 0.3 2.5 1 1 1 2 2 2 0 YMGG-like Gly-zipper Hydantoinase_A PF01968.18 gi|312136437|ref|YP_004003774.1| - 5.3e-28 98.1 1.1 1.6e-26 93.2 0.4 2.0 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.6 gi|312136437|ref|YP_004003774.1| - 0.00015 20.5 0.2 0.029 13.0 0.0 2.5 3 0 0 3 3 3 2 MutL protein Hydant_A_N PF05378.13 gi|312136437|ref|YP_004003774.1| - 0.0044 16.7 2.6 1.1 8.9 0.2 2.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|312136437|ref|YP_004003774.1| - 0.043 14.3 0.3 1.5 9.3 0.1 2.5 2 1 0 2 2 2 0 Cell division protein FtsA ATP-grasp_3 PF02655.14 gi|312136438|ref|YP_004003775.1| - 5.7e-42 143.5 1.6 8.3e-42 143.0 1.6 1.3 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|312136438|ref|YP_004003775.1| - 7.2e-07 29.4 0.0 1.3e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 pre ATP-grasp 3 domain VAD1-2 PF15310.6 gi|312136438|ref|YP_004003775.1| - 0.038 13.9 0.0 6.6 6.5 0.0 2.2 2 0 0 2 2 2 0 Vitamin A-deficiency (VAD) rat model signalling UDPG_MGDP_dh_N PF03721.14 gi|312136439|ref|YP_004003776.1| - 5.2e-58 195.7 1.7 8.3e-58 195.1 1.7 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|312136439|ref|YP_004003776.1| - 3.9e-30 103.9 0.0 1.3e-29 102.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|312136439|ref|YP_004003776.1| - 1.2e-19 70.7 0.0 3.9e-18 65.8 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|312136439|ref|YP_004003776.1| - 1.6e-10 40.7 0.4 5.1e-05 22.7 0.0 3.3 4 1 0 4 4 4 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|312136439|ref|YP_004003776.1| - 3.1e-07 30.7 0.0 1.4e-06 28.6 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|312136439|ref|YP_004003776.1| - 1.3e-06 28.5 0.0 3e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|312136439|ref|YP_004003776.1| - 2e-05 24.6 1.0 3e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|312136439|ref|YP_004003776.1| - 0.0029 16.9 0.9 0.012 14.9 0.2 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|312136439|ref|YP_004003776.1| - 0.0056 16.3 0.1 0.0098 15.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|312136439|ref|YP_004003776.1| - 0.021 15.4 1.5 0.063 13.9 0.2 2.5 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|312136439|ref|YP_004003776.1| - 0.042 14.1 0.2 0.042 14.1 0.2 2.7 3 1 0 3 3 2 0 TrkA-N domain DUF3343 PF11823.8 gi|312136439|ref|YP_004003776.1| - 0.05 13.1 0.0 0.56 9.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) IlvN PF07991.12 gi|312136439|ref|YP_004003776.1| - 0.073 12.6 0.2 1.5 8.3 0.2 2.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Epimerase_2 PF02350.19 gi|312136440|ref|YP_004003777.1| - 2e-124 415.0 0.0 2.4e-124 414.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|312136440|ref|YP_004003777.1| - 0.0071 15.9 1.2 0.022 14.3 1.2 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 DUF460 PF04312.13 gi|312136441|ref|YP_004003778.1| - 1.1e-36 125.6 0.8 4.8e-36 123.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DpaA_N PF16924.5 gi|312136441|ref|YP_004003778.1| - 0.0041 17.2 0.9 0.028 14.5 0.0 2.8 3 0 0 3 3 3 1 Dipicolinate synthase subunit A N-terminal domain DUF148 PF02520.17 gi|312136441|ref|YP_004003778.1| - 0.019 15.1 3.6 0.019 15.1 3.6 3.2 4 1 0 4 4 4 0 Domain of unknown function DUF148 R3H PF01424.22 gi|312136441|ref|YP_004003778.1| - 0.12 12.3 0.6 3.6 7.6 0.0 2.7 2 0 0 2 2 2 0 R3H domain Tweety PF04906.13 gi|312136441|ref|YP_004003778.1| - 0.88 8.2 2.9 1.4 7.5 0.0 2.1 2 0 0 2 2 2 0 Tweety Cep57_CLD_2 PF14197.6 gi|312136441|ref|YP_004003778.1| - 3.6 7.7 21.7 0.043 13.9 8.5 3.1 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 PseudoU_synth_1 PF01416.20 gi|312136442|ref|YP_004003779.1| - 1.5e-32 112.3 0.0 3.3e-23 82.2 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase EamA PF00892.20 gi|312136443|ref|YP_004003780.1| - 4e-47 159.8 43.9 1.1e-25 90.4 16.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|312136443|ref|YP_004003780.1| - 0.028 14.5 1.3 0.028 14.5 1.3 2.6 2 1 0 2 2 2 0 Putative transmembrane family 234 FmdE PF02663.14 gi|312136444|ref|YP_004003781.1| - 1.5e-34 118.9 0.0 1.9e-20 73.2 0.0 2.8 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF1002 PF06207.11 gi|312136445|ref|YP_004003782.1| - 7e-58 195.8 15.7 8.7e-58 195.5 15.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) ApoLp-III PF07464.11 gi|312136445|ref|YP_004003782.1| - 0.0007 19.7 11.3 0.0007 19.7 11.3 2.5 2 1 1 3 3 3 1 Apolipophorin-III precursor (apoLp-III) SpoVIF PF14069.6 gi|312136445|ref|YP_004003782.1| - 0.00076 19.2 9.6 0.0024 17.6 9.6 1.9 1 0 0 1 1 1 1 Stage VI sporulation protein F DNA_ligase_A_N PF04675.14 gi|312136445|ref|YP_004003782.1| - 0.0022 18.3 0.3 0.012 15.9 0.0 2.1 1 1 1 2 2 2 1 DNA ligase N terminus CREPT PF16566.5 gi|312136445|ref|YP_004003782.1| - 0.013 15.6 3.5 0.028 14.6 3.5 1.5 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour UPF0154 PF03672.13 gi|312136445|ref|YP_004003782.1| - 0.021 14.8 1.6 0.048 13.7 1.6 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) Apolipoprotein PF01442.18 gi|312136445|ref|YP_004003782.1| - 0.032 14.1 0.5 0.053 13.4 0.5 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain LMBR1 PF04791.16 gi|312136445|ref|YP_004003782.1| - 0.048 12.6 3.2 0.055 12.4 0.6 2.0 2 0 0 2 2 2 0 LMBR1-like membrane protein Spore_III_AB PF09548.10 gi|312136445|ref|YP_004003782.1| - 0.067 13.3 1.2 0.17 12.0 0.6 2.0 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) DUF507 PF04368.13 gi|312136445|ref|YP_004003782.1| - 0.14 12.1 7.7 0.052 13.5 4.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF507) SKA2 PF16740.5 gi|312136445|ref|YP_004003782.1| - 0.16 11.8 4.6 0.1 12.4 1.7 2.0 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF3510 PF12022.8 gi|312136445|ref|YP_004003782.1| - 0.33 11.3 3.2 0.62 10.5 1.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3510) DUF4404 PF14357.6 gi|312136445|ref|YP_004003782.1| - 0.42 11.3 5.8 15 6.3 0.9 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) GIT1_C PF12205.8 gi|312136445|ref|YP_004003782.1| - 0.42 10.7 5.8 0.84 9.8 5.7 1.6 1 1 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term SurA_N PF09312.11 gi|312136445|ref|YP_004003782.1| - 0.49 10.5 7.0 4 7.5 6.8 2.3 1 1 0 1 1 1 0 SurA N-terminal domain MCU PF04678.13 gi|312136445|ref|YP_004003782.1| - 0.69 10.0 2.3 1.3 9.1 2.3 1.4 1 0 0 1 1 1 0 Mitochondrial calcium uniporter TraQ PF09679.10 gi|312136446|ref|YP_004003783.1| - 0.18 11.7 1.0 0.48 10.4 0.2 2.1 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) EMP70 PF02990.16 gi|312136447|ref|YP_004003784.1| - 0.0057 15.4 3.4 0.0066 15.2 3.4 1.1 1 0 0 1 1 1 1 Endomembrane protein 70 DUF5113 PF17140.4 gi|312136447|ref|YP_004003784.1| - 0.095 12.5 4.1 0.16 11.8 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) MgtE PF01769.16 gi|312136447|ref|YP_004003784.1| - 0.99 9.8 8.7 4.2 7.8 0.4 2.0 1 1 1 2 2 2 0 Divalent cation transporter Ribosomal_S8e PF01201.22 gi|312136448|ref|YP_004003785.1| - 7.4e-40 136.3 6.1 8.7e-40 136.1 6.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e DNA_pol_B PF00136.21 gi|312136449|ref|YP_004003786.1| - 2.5e-27 95.7 2.3 2.8e-27 95.6 2.3 1.0 1 0 0 1 1 1 1 DNA polymerase family B HAD_2 PF13419.6 gi|312136450|ref|YP_004003787.1| - 3.4e-32 112.0 0.9 5.2e-32 111.4 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|312136450|ref|YP_004003787.1| - 8.7e-19 68.6 0.1 1.5e-17 64.6 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|312136450|ref|YP_004003787.1| - 1.6e-12 47.3 0.0 2.8e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|312136450|ref|YP_004003787.1| - 9.1e-06 26.2 0.0 1.3e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|312136450|ref|YP_004003787.1| - 0.0029 17.7 0.0 1.4 9.0 0.0 3.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|312136450|ref|YP_004003787.1| - 0.0047 16.6 0.2 5.5 6.7 0.0 3.3 2 1 1 3 3 3 2 Polynucleotide kinase 3 phosphatase DUF4898 PF16239.5 gi|312136450|ref|YP_004003787.1| - 0.061 13.3 4.3 0.41 10.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4898) Acid_phosphat_B PF03767.14 gi|312136450|ref|YP_004003787.1| - 0.13 11.8 1.3 0.28 10.7 0.1 2.1 3 0 0 3 3 3 0 HAD superfamily, subfamily IIIB (Acid phosphatase) PGP_phosphatase PF09419.10 gi|312136450|ref|YP_004003787.1| - 0.14 11.8 0.3 0.38 10.3 0.1 1.8 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase Mg_chelatase PF01078.21 gi|312136451|ref|YP_004003788.1| - 1.2e-08 34.6 0.0 1e-06 28.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_45 PF14947.6 gi|312136451|ref|YP_004003788.1| - 0.00059 19.8 0.4 0.042 13.8 0.0 3.1 3 0 0 3 3 3 1 Winged helix-turn-helix AAA_5 PF07728.14 gi|312136451|ref|YP_004003788.1| - 0.00062 19.8 0.6 0.013 15.5 0.0 3.0 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|312136451|ref|YP_004003788.1| - 0.00088 19.7 0.7 0.0088 16.5 0.1 2.6 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|312136451|ref|YP_004003788.1| - 0.0011 19.3 0.0 0.23 11.9 0.0 2.5 2 0 0 2 2 2 1 RNA helicase TIP49 PF06068.13 gi|312136451|ref|YP_004003788.1| - 0.0023 17.2 3.2 0.034 13.4 0.0 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|312136451|ref|YP_004003788.1| - 0.0025 18.2 0.0 0.0065 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain HxlR PF01638.17 gi|312136451|ref|YP_004003788.1| - 0.0028 17.5 0.1 0.021 14.7 0.1 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix AAA_22 PF13401.6 gi|312136451|ref|YP_004003788.1| - 0.0098 16.2 0.0 0.031 14.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|312136451|ref|YP_004003788.1| - 0.015 15.9 0.0 0.064 13.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 gi|312136451|ref|YP_004003788.1| - 0.018 15.8 1.3 0.053 14.2 0.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) PIF1 PF05970.14 gi|312136451|ref|YP_004003788.1| - 0.02 14.1 0.0 0.047 12.9 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.6 gi|312136451|ref|YP_004003788.1| - 0.025 14.3 0.2 0.061 13.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|312136451|ref|YP_004003788.1| - 0.029 14.2 0.1 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|312136451|ref|YP_004003788.1| - 0.048 13.4 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|312136451|ref|YP_004003788.1| - 0.051 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|312136451|ref|YP_004003788.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|312136451|ref|YP_004003788.1| - 0.1 12.3 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|312136451|ref|YP_004003788.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|312136451|ref|YP_004003788.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region MarR PF01047.22 gi|312136451|ref|YP_004003788.1| - 0.15 12.0 0.7 0.37 10.8 0.3 1.9 2 0 0 2 2 1 0 MarR family Macro PF01661.21 gi|312136452|ref|YP_004003789.1| - 2.7e-30 104.8 0.2 3.7e-30 104.4 0.2 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|312136452|ref|YP_004003789.1| - 5.6e-09 35.7 0.1 9.3e-08 31.7 0.1 2.2 1 1 0 1 1 1 1 Macro-like domain NosD PF05048.13 gi|312136453|ref|YP_004003790.1| - 8.3e-29 100.5 65.8 1.8e-15 56.9 31.9 3.1 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|312136453|ref|YP_004003790.1| - 1.1e-16 61.1 76.1 2.4e-10 40.5 31.2 3.9 2 1 2 4 4 4 2 Right handed beta helix region Transglut_C PF00927.22 gi|312136453|ref|YP_004003790.1| - 0.0039 17.3 0.3 0.011 15.8 0.3 1.8 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain fn3_5 PF06280.12 gi|312136453|ref|YP_004003790.1| - 0.0086 16.8 6.3 3.8 8.2 0.2 3.5 2 1 0 2 2 2 2 Fn3-like domain DUF4624 PF15417.6 gi|312136453|ref|YP_004003790.1| - 0.052 13.4 0.1 0.052 13.4 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4624) Glycos_transf_1 PF00534.20 gi|312136454|ref|YP_004003791.1| - 2.1e-45 154.3 1.7 4.1e-45 153.4 1.7 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312136454|ref|YP_004003791.1| - 1.7e-32 112.8 0.0 2.3e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|312136454|ref|YP_004003791.1| - 1.3e-28 100.1 0.0 2e-28 99.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|312136454|ref|YP_004003791.1| - 1.8e-15 57.8 0.0 2.2e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|312136454|ref|YP_004003791.1| - 1.3e-11 44.7 0.0 2.9e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|312136454|ref|YP_004003791.1| - 3.5e-11 43.3 0.2 3.5e-11 43.3 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like DpaA_N PF16924.5 gi|312136454|ref|YP_004003791.1| - 0.017 15.2 0.6 1.6 8.8 0.0 3.5 3 1 1 4 4 4 0 Dipicolinate synthase subunit A N-terminal domain Ubiquitin_5 PF18037.1 gi|312136454|ref|YP_004003791.1| - 0.038 14.3 0.1 0.12 12.7 0.1 1.8 1 0 0 1 1 1 0 Ubiquitin-like domain Imm58 PF15581.6 gi|312136455|ref|YP_004003792.1| - 0.072 13.2 1.4 0.069 13.3 1.4 1.2 1 0 0 1 1 1 0 Immunity protein 58 DUF3290 PF11694.8 gi|312136455|ref|YP_004003792.1| - 0.8 9.7 8.4 0.79 9.7 8.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) TrbC PF04956.13 gi|312136455|ref|YP_004003792.1| - 1 9.6 9.0 2.1 8.6 9.0 1.5 1 1 1 2 2 2 0 TrbC/VIRB2 family DUF4131 PF13567.6 gi|312136455|ref|YP_004003792.1| - 1.6 8.3 4.5 1.8 8.2 4.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Wzy_C PF04932.15 gi|312136455|ref|YP_004003792.1| - 2.1 7.9 8.2 2.3 7.9 8.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase CCG PF02754.16 gi|312136456|ref|YP_004003793.1| - 8.8e-43 144.4 0.6 2.5e-23 82.1 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|312136456|ref|YP_004003793.1| - 1.9e-30 105.0 3.3 2.3e-30 104.8 0.1 2.5 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|312136456|ref|YP_004003793.1| - 3.3e-13 49.9 3.8 3.3e-13 49.9 3.8 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136456|ref|YP_004003793.1| - 9.5e-09 35.7 4.0 9.5e-09 35.7 4.0 3.8 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|312136456|ref|YP_004003793.1| - 1.7e-06 27.9 0.1 1.7e-06 27.9 0.1 2.5 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 gi|312136456|ref|YP_004003793.1| - 2.4e-06 28.0 7.0 2.4e-06 28.0 7.0 3.9 3 1 2 5 5 5 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136456|ref|YP_004003793.1| - 4.1e-06 26.8 8.8 4.1e-06 26.8 8.8 3.4 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136456|ref|YP_004003793.1| - 4e-05 23.7 21.8 0.00015 21.9 10.8 4.3 4 1 2 6 6 6 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312136456|ref|YP_004003793.1| - 0.0017 18.5 6.8 0.59 10.3 0.1 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136456|ref|YP_004003793.1| - 0.0031 18.4 20.7 0.0075 17.2 10.7 4.0 4 1 1 5 5 4 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|312136456|ref|YP_004003793.1| - 0.014 15.2 5.7 0.014 15.2 5.7 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer2_4 PF13510.6 gi|312136456|ref|YP_004003793.1| - 0.014 15.4 1.8 0.02 14.9 0.1 2.1 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_3 PF12798.7 gi|312136456|ref|YP_004003793.1| - 0.018 15.9 6.0 0.018 15.9 6.0 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|312136456|ref|YP_004003793.1| - 0.025 15.3 3.6 4.5 8.1 0.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|312136456|ref|YP_004003793.1| - 0.045 14.3 1.6 0.045 14.3 1.6 4.7 5 0 0 5 5 4 0 4Fe-4S binding domain Peptidase_C3 PF00548.20 gi|312136456|ref|YP_004003793.1| - 0.73 9.7 2.7 8.8 6.2 0.4 2.5 1 1 1 2 2 2 0 3C cysteine protease (picornain 3C) Fer4_21 PF14697.6 gi|312136456|ref|YP_004003793.1| - 2.9 8.1 18.0 0.69 10.1 0.4 3.6 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136456|ref|YP_004003793.1| - 4.1 8.0 12.1 8.6 7.0 1.7 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|312136456|ref|YP_004003793.1| - 5.9 7.8 17.3 1.6 9.6 0.5 4.4 5 0 0 5 5 4 0 4Fe-4S dicluster domain SpoU_methylase PF00588.19 gi|312136457|ref|YP_004003794.1| - 2e-32 112.3 0.1 2.7e-32 111.9 0.1 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|312136457|ref|YP_004003794.1| - 0.00029 20.8 0.0 0.012 15.4 0.0 2.4 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DUF1512 PF07431.12 gi|312136458|ref|YP_004003795.1| - 2.9e-117 391.7 13.9 3.3e-117 391.4 13.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) DUF498 PF04430.14 gi|312136458|ref|YP_004003795.1| - 0.052 13.6 0.1 5.1 7.2 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF498/DUF598) DUF1672 PF07901.11 gi|312136458|ref|YP_004003795.1| - 0.083 12.2 3.9 0.15 11.3 3.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1672) CHASE6_C PF17150.4 gi|312136458|ref|YP_004003795.1| - 0.17 12.6 1.0 0.58 10.9 0.1 2.5 3 0 0 3 3 3 0 C-terminal domain of two-partite extracellular sensor domain OSCP PF00213.18 gi|312136458|ref|YP_004003795.1| - 0.22 11.6 5.0 0.21 11.7 2.6 2.1 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit P4Ha_N PF08336.11 gi|312136458|ref|YP_004003795.1| - 2.9 7.9 8.7 0.15 12.1 2.0 2.2 2 1 1 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Ribosomal_L22 PF00237.19 gi|312136458|ref|YP_004003795.1| - 8.8 6.6 10.6 0.71 10.1 0.2 3.0 2 1 0 2 2 2 0 Ribosomal protein L22p/L17e DCD PF06559.11 gi|312136459|ref|YP_004003796.1| - 3.7e-23 81.9 0.0 1.6e-12 46.9 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|312136459|ref|YP_004003796.1| - 1.4e-17 63.6 0.0 1.8e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 dUTPase HGTP_anticodon PF03129.20 gi|312136460|ref|YP_004003797.1| - 8.7e-23 80.3 3.2 6.8e-22 77.4 0.2 2.6 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|312136460|ref|YP_004003797.1| - 4.5e-11 43.0 0.3 1.2e-10 41.7 0.3 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|312136460|ref|YP_004003797.1| - 0.0099 15.0 0.7 2 7.4 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) DKNYY PF13644.6 gi|312136460|ref|YP_004003797.1| - 0.058 14.2 4.9 0.098 13.4 3.1 2.2 2 1 0 2 2 2 0 DKNYY family Zn-ribbon_8 PF09723.10 gi|312136460|ref|YP_004003797.1| - 0.072 13.2 0.2 1.7 8.8 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|312136460|ref|YP_004003797.1| - 0.6 10.1 3.0 2.3 8.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF366 PF04017.12 gi|312136461|ref|YP_004003798.1| - 9.1e-74 246.9 1.6 1e-73 246.7 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) PTPS PF01242.19 gi|312136462|ref|YP_004003799.1| - 2.3e-29 101.9 0.0 2.6e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|312136463|ref|YP_004003800.1| - 4.5e-16 59.7 0.1 6.5e-16 59.2 0.1 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|312136463|ref|YP_004003800.1| - 1.3e-13 51.1 0.1 2.5e-13 50.2 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|312136463|ref|YP_004003800.1| - 7e-13 49.0 0.1 1.2e-12 48.3 0.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain CBS PF00571.28 gi|312136464|ref|YP_004003801.1| - 9.1e-31 106.1 3.9 5.7e-15 55.5 0.5 2.2 2 0 0 2 2 2 2 CBS domain DUF4428 PF14471.6 gi|312136464|ref|YP_004003801.1| - 0.088 12.7 2.4 0.21 11.5 2.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) TF_Zn_Ribbon PF08271.12 gi|312136464|ref|YP_004003801.1| - 0.29 10.7 3.8 0.58 9.7 2.6 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding CBS PF00571.28 gi|312136465|ref|YP_004003802.1| - 1.4e-49 166.3 15.1 2.8e-13 50.1 0.0 4.7 4 1 0 4 4 4 4 CBS domain Terminase_6C PF17289.2 gi|312136465|ref|YP_004003802.1| - 0.0096 16.0 0.0 0.027 14.5 0.0 1.8 1 1 0 1 1 1 1 Terminase RNaseH-like domain H_kinase_N PF12282.8 gi|312136465|ref|YP_004003802.1| - 0.018 15.0 0.2 8.6 6.3 0.0 3.0 2 1 1 3 3 3 0 Signal transduction histidine kinase Peptidase_S55 PF05580.12 gi|312136465|ref|YP_004003802.1| - 0.029 14.3 0.1 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 SpoIVB peptidase S55 PduV-EutP PF10662.9 gi|312136465|ref|YP_004003802.1| - 0.3 10.8 4.6 11 5.7 0.2 3.3 2 2 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation CBS PF00571.28 gi|312136466|ref|YP_004003803.1| - 7e-61 202.5 14.6 1.3e-14 54.4 0.5 4.1 4 0 0 4 4 4 4 CBS domain Peripla_BP_4 PF13407.6 gi|312136466|ref|YP_004003803.1| - 0.0086 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain CBS PF00571.28 gi|312136467|ref|YP_004003804.1| - 2.6e-68 226.3 20.6 2.4e-18 66.3 0.6 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|312136467|ref|YP_004003804.1| - 0.0013 18.8 6.1 5.5 7.1 0.3 4.3 4 0 0 4 4 4 3 PRC-barrel domain IF3_N PF05198.16 gi|312136467|ref|YP_004003804.1| - 0.98 9.7 8.6 39 4.6 0.1 5.3 3 3 1 5 5 5 0 Translation initiation factor IF-3, N-terminal domain CBS PF00571.28 gi|312136468|ref|YP_004003805.1| - 2.2e-59 197.7 13.7 9.5e-17 61.2 0.2 4.1 4 0 0 4 4 4 4 CBS domain Lig_C PF18330.1 gi|312136469|ref|YP_004003806.1| - 3.5e-41 140.1 1.4 9e-41 138.8 1.4 1.7 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|312136469|ref|YP_004003806.1| - 3.8e-19 69.6 0.1 7.2e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|312136469|ref|YP_004003806.1| - 0.00017 21.3 0.2 0.3 10.7 0.1 2.9 3 0 0 3 3 3 2 ATP dependent DNA ligase domain A2L_zn_ribbon PF08792.10 gi|312136469|ref|YP_004003806.1| - 0.033 13.9 0.0 0.43 10.4 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain RL PF17797.1 gi|312136469|ref|YP_004003806.1| - 0.037 14.0 0.0 0.1 12.5 0.0 1.8 1 0 0 1 1 1 0 RL domain DUF1610 PF07754.11 gi|312136469|ref|YP_004003806.1| - 1.2 9.1 4.1 0.93 9.5 1.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PDT PF00800.18 gi|312136470|ref|YP_004003807.1| - 3e-61 206.4 0.0 4.1e-61 206.0 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|312136470|ref|YP_004003807.1| - 1.4e-10 40.8 0.0 4.5e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 ACT domain DUF364 PF04016.12 gi|312136471|ref|YP_004003808.1| - 6e-40 136.2 0.0 8.2e-40 135.8 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|312136471|ref|YP_004003808.1| - 1.5e-22 79.6 0.0 2.5e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Adenine_glyco PF03352.13 gi|312136471|ref|YP_004003808.1| - 0.11 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyladenine glycosylase DUF364 PF04016.12 gi|312136472|ref|YP_004003809.1| - 6.1e-14 51.8 0.0 9.1e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF2325 PF10087.9 gi|312136472|ref|YP_004003809.1| - 0.01 15.9 0.2 0.027 14.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) PHO4 PF01384.20 gi|312136473|ref|YP_004003810.1| - 1.9e-66 224.4 30.4 4.1e-66 223.3 30.4 1.5 1 1 0 1 1 1 1 Phosphate transporter family Spore_III_AB PF09548.10 gi|312136473|ref|YP_004003810.1| - 0.067 13.3 0.9 0.12 12.5 0.2 1.8 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) CBS PF00571.28 gi|312136474|ref|YP_004003811.1| - 3.2e-30 104.4 6.4 1.6e-14 54.1 1.3 2.1 2 0 0 2 2 2 2 CBS domain iPGM_N PF06415.13 gi|312136474|ref|YP_004003811.1| - 0.0017 17.9 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Intein_splicing PF14890.6 gi|312136474|ref|YP_004003811.1| - 0.7 9.8 2.8 1 9.3 2.8 1.4 1 1 0 1 1 1 0 Intein splicing domain ATP-cone PF03477.16 gi|312136475|ref|YP_004003812.1| - 2.1e-10 41.0 4.0 5e-09 36.6 0.5 3.5 4 0 0 4 4 4 1 ATP cone domain AAA_18 PF13238.6 gi|312136475|ref|YP_004003812.1| - 9.4e-05 23.0 0.0 0.00026 21.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|312136475|ref|YP_004003812.1| - 0.004 16.5 0.0 0.49 9.6 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin Cytidylate_kin PF02224.18 gi|312136475|ref|YP_004003812.1| - 0.024 14.4 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA PF00004.29 gi|312136475|ref|YP_004003812.1| - 0.033 14.6 1.0 3.1 8.2 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin2 PF13189.6 gi|312136475|ref|YP_004003812.1| - 0.04 14.0 0.6 0.068 13.3 0.0 1.7 2 0 0 2 2 2 0 Cytidylate kinase-like family Hpr_kinase_C PF07475.12 gi|312136475|ref|YP_004003812.1| - 0.07 12.7 1.0 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF4777 PF16007.5 gi|312136475|ref|YP_004003812.1| - 0.11 12.8 2.4 2.1 8.7 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) Metallophos PF00149.28 gi|312136476|ref|YP_004003813.1| - 7.3e-20 72.3 0.0 1.1e-19 71.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|312136476|ref|YP_004003813.1| - 3.6e-15 56.0 0.6 2.1e-13 50.2 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|312136476|ref|YP_004003813.1| - 4.6e-14 53.0 0.0 7.4e-14 52.3 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2096 PF09869.9 gi|312136477|ref|YP_004003814.1| - 1.1e-64 217.6 2.0 1.2e-64 217.5 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) DUF749 PF05370.11 gi|312136478|ref|YP_004003815.1| - 1.2e-37 127.9 2.7 1.3e-37 127.7 2.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) DUF4265 PF14085.6 gi|312136478|ref|YP_004003815.1| - 0.082 12.9 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) PSRP-3_Ycf65 PF04839.13 gi|312136478|ref|YP_004003815.1| - 0.11 12.7 0.4 0.21 11.8 0.1 1.6 2 0 0 2 2 2 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) PBP PF01161.20 gi|312136479|ref|YP_004003816.1| - 1.3e-42 145.2 0.0 1.6e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Tubulin PF00091.25 gi|312136480|ref|YP_004003817.1| - 2.3e-42 145.5 0.2 5.5e-42 144.2 0.2 1.7 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|312136480|ref|YP_004003817.1| - 1.7e-34 118.0 2.4 3.9e-34 116.8 1.4 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain RTT107_BRCT_6 PF16771.5 gi|312136480|ref|YP_004003817.1| - 0.12 12.5 0.2 2.5 8.3 0.0 2.6 2 1 1 3 3 3 0 Regulator of Ty1 transposition protein 107 BRCT domain Tubulin_2 PF13809.6 gi|312136480|ref|YP_004003817.1| - 0.65 9.1 4.5 0.3 10.3 0.5 1.9 1 1 0 2 2 2 0 Tubulin like PK_C PF02887.16 gi|312136481|ref|YP_004003818.1| - 2.2e-18 66.6 0.4 3.1e-18 66.1 0.4 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain gp45-slide_C PF09116.10 gi|312136481|ref|YP_004003818.1| - 0.11 12.6 1.1 0.51 10.4 0.8 2.1 1 1 1 2 2 2 0 gp45 sliding clamp, C terminal MCH PF02289.16 gi|312136482|ref|YP_004003819.1| - 1.6e-132 441.5 0.0 1.8e-132 441.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thymidylat_synt PF00303.19 gi|312136483|ref|YP_004003820.1| - 6.7e-19 68.1 0.3 5.3e-18 65.1 0.3 1.9 1 1 0 1 1 1 1 Thymidylate synthase FemAB PF02388.16 gi|312136483|ref|YP_004003820.1| - 0.048 12.5 0.1 0.066 12.1 0.1 1.1 1 0 0 1 1 1 0 FemAB family Meth_synt_2 PF01717.18 gi|312136484|ref|YP_004003821.1| - 6.4e-64 216.3 0.0 7.5e-64 216.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|312136484|ref|YP_004003821.1| - 6.3e-09 35.8 0.3 8.9e-09 35.3 0.3 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|312136484|ref|YP_004003821.1| - 1e-06 28.2 1.3 0.00072 18.8 0.3 2.1 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) DUF1894 PF08979.11 gi|312136485|ref|YP_004003822.1| - 2.2e-33 114.5 0.9 2.5e-33 114.3 0.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|312136486|ref|YP_004003823.1| - 9.3e-49 165.4 0.1 1.1e-48 165.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) PcfJ PF14284.6 gi|312136486|ref|YP_004003823.1| - 0.00029 20.7 0.1 0.00042 20.2 0.1 1.2 1 0 0 1 1 1 1 PcfJ-like protein NikR_C PF08753.11 gi|312136486|ref|YP_004003823.1| - 0.03 14.5 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 NikR C terminal nickel binding domain GTP-bdg_N PF13167.6 gi|312136486|ref|YP_004003823.1| - 0.082 13.6 0.0 0.15 12.8 0.0 1.4 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal POR PF01558.18 gi|312136488|ref|YP_004003825.1| - 4.7e-41 140.8 0.8 7.9e-41 140.1 0.8 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|312136489|ref|YP_004003826.1| - 1.9e-14 52.8 19.0 2.5e-09 36.5 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|312136489|ref|YP_004003826.1| - 1.8e-08 34.1 17.4 2.1e-05 24.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312136489|ref|YP_004003826.1| - 3.7e-08 33.4 24.5 4e-05 23.7 15.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312136489|ref|YP_004003826.1| - 5.7e-08 32.8 16.2 1.2e-07 31.7 16.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136489|ref|YP_004003826.1| - 8.2e-08 31.9 9.2 0.0016 18.4 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136489|ref|YP_004003826.1| - 1.5e-07 31.4 26.5 1.4e-05 25.1 16.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136489|ref|YP_004003826.1| - 1.6e-07 32.2 15.2 0.0012 19.8 3.3 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|312136489|ref|YP_004003826.1| - 5.3e-06 26.9 15.8 5.9e-05 23.6 16.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136489|ref|YP_004003826.1| - 0.00054 20.3 16.5 0.055 14.0 4.6 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|312136489|ref|YP_004003826.1| - 0.012 16.5 19.5 0.19 12.7 4.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312136489|ref|YP_004003826.1| - 0.012 16.0 15.1 0.025 15.0 2.8 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136489|ref|YP_004003826.1| - 0.016 15.7 15.5 0.47 11.0 5.4 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136489|ref|YP_004003826.1| - 0.02 15.5 15.0 0.069 13.7 3.1 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|312136489|ref|YP_004003826.1| - 0.082 13.8 14.8 0.49 11.3 4.1 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312136489|ref|YP_004003826.1| - 0.98 9.6 11.6 1.5 9.0 11.6 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136489|ref|YP_004003826.1| - 7.5 7.4 14.9 5.9 7.7 3.6 2.8 2 2 0 2 2 2 0 4Fe-4S single cluster domain POR_N PF01855.19 gi|312136490|ref|YP_004003827.1| - 4.1e-74 249.2 0.1 5.2e-74 248.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|312136490|ref|YP_004003827.1| - 2.3e-34 117.8 0.2 5.1e-34 116.6 0.2 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|312136490|ref|YP_004003827.1| - 3.7e-05 23.6 0.5 0.0006 19.7 0.1 2.4 2 0 0 2 2 2 1 Transketolase, C-terminal domain FAM25 PF15825.5 gi|312136490|ref|YP_004003827.1| - 0.027 14.8 1.9 5.4 7.4 0.2 3.0 3 0 0 3 3 3 0 FAM25 family HTH_40 PF14493.6 gi|312136490|ref|YP_004003827.1| - 0.042 14.3 0.1 0.24 11.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Ribul_P_3_epim PF00834.19 gi|312136490|ref|YP_004003827.1| - 0.043 13.2 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TPP_enzyme_C PF02775.21 gi|312136491|ref|YP_004003828.1| - 4.5e-29 101.2 2.7 1e-28 100.1 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|312136491|ref|YP_004003828.1| - 0.13 11.5 0.2 0.18 11.0 0.2 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4 PF00037.27 gi|312136492|ref|YP_004003829.1| - 7.9e-16 57.1 38.6 3.4e-10 39.3 2.7 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|312136492|ref|YP_004003829.1| - 2.1e-15 56.0 35.0 1.1e-06 28.4 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136492|ref|YP_004003829.1| - 6.5e-13 48.6 26.0 4.1e-08 33.2 5.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312136492|ref|YP_004003829.1| - 7.6e-13 48.8 28.3 9.8e-05 22.9 14.2 4.0 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136492|ref|YP_004003829.1| - 1e-11 44.8 26.3 0.00024 21.2 11.6 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136492|ref|YP_004003829.1| - 2.5e-10 39.8 33.1 1.4e-05 24.9 1.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136492|ref|YP_004003829.1| - 2e-08 35.0 29.9 0.035 15.0 5.1 4.4 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|312136492|ref|YP_004003829.1| - 4.7e-08 33.4 44.1 0.014 16.3 7.3 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_11 PF13247.6 gi|312136492|ref|YP_004003829.1| - 1.2e-06 28.5 14.7 1.2e-06 28.5 14.7 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136492|ref|YP_004003829.1| - 1.9e-06 27.9 33.8 0.0029 18.0 2.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136492|ref|YP_004003829.1| - 0.00015 21.8 31.2 0.004 17.3 10.6 3.5 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136492|ref|YP_004003829.1| - 0.0066 17.2 23.2 0.99 10.2 9.1 4.4 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|312136492|ref|YP_004003829.1| - 0.024 15.2 2.2 0.024 15.2 2.2 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|312136492|ref|YP_004003829.1| - 0.029 14.9 33.3 6.8 7.3 23.7 4.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136492|ref|YP_004003829.1| - 0.031 14.7 2.6 0.031 14.7 2.6 4.1 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|312136492|ref|YP_004003829.1| - 0.056 13.2 0.8 0.056 13.2 0.8 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster QSOX_Trx1 PF18108.1 gi|312136492|ref|YP_004003829.1| - 0.069 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 QSOX Trx-like domain Furin-like_2 PF15913.5 gi|312136492|ref|YP_004003829.1| - 2 8.6 18.3 4.9 7.3 3.8 3.1 1 1 1 2 2 2 0 Furin-like repeat, cysteine-rich Fer4 PF00037.27 gi|312136493|ref|YP_004003830.1| - 1.2e-18 66.1 41.6 2.7e-11 42.8 6.0 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|312136493|ref|YP_004003830.1| - 1.7e-15 56.3 42.9 4.1e-09 36.1 5.5 4.5 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136493|ref|YP_004003830.1| - 7.5e-13 48.9 43.9 7.4e-07 29.7 13.0 3.8 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136493|ref|YP_004003830.1| - 1.3e-12 47.0 30.4 1.2e-07 31.4 3.4 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|312136493|ref|YP_004003830.1| - 1.6e-11 43.8 33.0 4.4e-05 23.7 4.0 4.6 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312136493|ref|YP_004003830.1| - 2.9e-11 43.4 28.6 7.3e-07 29.3 8.0 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|312136493|ref|YP_004003830.1| - 3.1e-11 43.3 11.7 3.1e-11 43.3 11.7 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136493|ref|YP_004003830.1| - 7.9e-11 42.7 27.7 0.00061 20.7 3.7 4.4 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|312136493|ref|YP_004003830.1| - 1.1e-10 41.4 31.3 4.1e-08 33.2 9.4 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136493|ref|YP_004003830.1| - 1.6e-10 41.2 43.8 0.00057 20.6 7.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136493|ref|YP_004003830.1| - 2.2e-07 30.9 37.2 2.9e-05 24.1 12.3 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136493|ref|YP_004003830.1| - 0.00017 22.1 2.0 0.00017 22.1 2.0 4.3 4 1 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|312136493|ref|YP_004003830.1| - 0.0015 19.1 28.9 0.027 15.0 2.4 4.2 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136493|ref|YP_004003830.1| - 0.0024 18.6 10.2 0.0024 18.6 10.2 4.0 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|312136493|ref|YP_004003830.1| - 0.011 16.1 30.7 0.18 12.3 2.9 4.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312136493|ref|YP_004003830.1| - 0.013 15.7 5.5 0.013 15.7 5.5 3.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|312136493|ref|YP_004003830.1| - 0.057 14.3 2.8 0.057 14.3 2.8 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fumerase PF05681.14 gi|312136494|ref|YP_004003831.1| - 1.3e-102 342.8 0.2 1.5e-102 342.6 0.2 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) PhoU PF01895.19 gi|312136495|ref|YP_004003832.1| - 8.3e-33 112.7 10.8 7.8e-18 64.7 4.6 2.1 2 0 0 2 2 2 2 PhoU domain Mis14 PF08641.12 gi|312136495|ref|YP_004003832.1| - 0.047 14.0 7.4 1.9 8.8 0.6 2.2 2 0 0 2 2 2 0 Kinetochore protein Mis14 like DUF948 PF06103.11 gi|312136495|ref|YP_004003832.1| - 0.12 12.6 1.9 8.5 6.7 0.1 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Herpes_UL14 PF03580.14 gi|312136495|ref|YP_004003832.1| - 0.16 12.2 5.5 0.47 10.7 0.6 2.3 2 0 0 2 2 2 0 Herpesvirus UL14-like protein BLOC1_2 PF10046.9 gi|312136495|ref|YP_004003832.1| - 1.4 9.3 6.9 1.3 9.4 0.5 2.8 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|312136496|ref|YP_004003833.1| - 7.2e-33 114.0 0.0 1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136496|ref|YP_004003833.1| - 1.9e-12 47.6 0.0 2.5e-05 24.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312136496|ref|YP_004003833.1| - 2e-09 37.2 0.1 3.1e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|312136496|ref|YP_004003833.1| - 7.3e-07 29.2 0.0 1.2e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|312136496|ref|YP_004003833.1| - 1.9e-05 24.9 0.0 3.5e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|312136496|ref|YP_004003833.1| - 0.00028 20.8 0.0 0.00067 19.6 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase AAA_29 PF13555.6 gi|312136496|ref|YP_004003833.1| - 0.0005 19.8 0.0 0.00096 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|312136496|ref|YP_004003833.1| - 0.003 18.1 0.5 0.0087 16.6 0.2 1.8 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|312136496|ref|YP_004003833.1| - 0.0032 16.7 0.0 0.007 15.6 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit Spore_IV_A PF09547.10 gi|312136496|ref|YP_004003833.1| - 0.0035 16.3 0.5 0.0089 15.0 0.1 1.8 3 0 0 3 3 3 1 Stage IV sporulation protein A (spore_IV_A) Rad17 PF03215.15 gi|312136496|ref|YP_004003833.1| - 0.0037 17.2 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|312136496|ref|YP_004003833.1| - 0.0043 17.5 0.1 0.017 15.5 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|312136496|ref|YP_004003833.1| - 0.0091 14.8 0.0 0.049 12.4 0.0 1.9 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_18 PF13238.6 gi|312136496|ref|YP_004003833.1| - 0.01 16.3 0.0 0.025 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|312136496|ref|YP_004003833.1| - 0.016 15.4 0.0 0.078 13.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|312136496|ref|YP_004003833.1| - 0.016 15.0 0.5 0.035 13.8 0.0 1.8 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|312136496|ref|YP_004003833.1| - 0.016 15.6 0.0 0.046 14.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 gi|312136496|ref|YP_004003833.1| - 0.016 15.1 1.3 0.23 11.3 1.3 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|312136496|ref|YP_004003833.1| - 0.034 13.9 0.1 0.5 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|312136496|ref|YP_004003833.1| - 0.053 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|312136496|ref|YP_004003833.1| - 0.053 13.5 0.0 0.094 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|312136496|ref|YP_004003833.1| - 0.058 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|312136496|ref|YP_004003833.1| - 0.078 13.1 0.1 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase IIGP PF05049.13 gi|312136496|ref|YP_004003833.1| - 0.094 11.8 0.1 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) AAA_13 PF13166.6 gi|312136496|ref|YP_004003833.1| - 0.1 11.2 0.0 0.26 9.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|312136496|ref|YP_004003833.1| - 0.12 12.1 0.0 3.9 7.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Viral_helicase1 PF01443.18 gi|312136496|ref|YP_004003833.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.6 gi|312136496|ref|YP_004003833.1| - 0.16 11.6 0.1 0.45 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|312136497|ref|YP_004003834.1| - 1.6e-28 99.7 15.6 1.6e-28 99.7 15.6 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|312136498|ref|YP_004003835.1| - 4.3e-27 95.0 19.7 4.3e-27 95.0 19.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|312136499|ref|YP_004003836.1| - 6.1e-49 167.2 1.3 2.3e-48 165.3 1.3 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|312136499|ref|YP_004003836.1| - 1.2e-23 83.2 0.0 1.8e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|312136499|ref|YP_004003836.1| - 3.6e-14 53.1 0.0 1.4e-13 51.2 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|312136499|ref|YP_004003836.1| - 2.6e-11 44.0 0.6 7.1e-11 42.6 0.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|312136499|ref|YP_004003836.1| - 3.5e-05 23.8 0.0 0.017 14.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|312136499|ref|YP_004003836.1| - 7.7e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|312136499|ref|YP_004003836.1| - 0.00019 20.9 0.0 0.00091 18.7 0.0 1.8 1 1 0 1 1 1 1 LysR substrate binding domain DUF1340 PF07067.11 gi|312136500|ref|YP_004003837.1| - 0.012 15.1 0.5 0.02 14.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1340) Radical_SAM PF04055.21 gi|312136500|ref|YP_004003837.1| - 0.026 14.9 0.1 0.055 13.8 0.1 1.6 1 0 0 1 1 1 0 Radical SAM superfamily EMG1 PF03587.14 gi|312136501|ref|YP_004003838.1| - 3.4e-53 180.2 0.3 3.9e-53 180.0 0.3 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase MTD PF01993.18 gi|312136501|ref|YP_004003838.1| - 0.095 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Bac_luciferase PF00296.20 gi|312136502|ref|YP_004003839.1| - 9.6e-64 215.8 0.0 1.2e-63 215.5 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase STT3 PF02516.14 gi|312136503|ref|YP_004003840.1| - 2.4e-66 224.6 40.8 5e-66 223.6 40.8 1.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit NPP1 PF05630.11 gi|312136503|ref|YP_004003840.1| - 0.071 13.2 0.0 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Necrosis inducing protein (NPP1) DUF4519 PF15012.6 gi|312136503|ref|YP_004003840.1| - 0.87 9.8 0.0 0.87 9.8 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4519) Gp_dh_C PF02800.20 gi|312136504|ref|YP_004003841.1| - 7.7e-36 123.1 0.2 1.1e-35 122.5 0.2 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|312136504|ref|YP_004003841.1| - 9.7e-11 41.9 0.2 2.7e-10 40.4 0.2 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|312136504|ref|YP_004003841.1| - 2.2e-06 27.9 1.5 1.5e-05 25.2 0.4 2.7 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|312136504|ref|YP_004003841.1| - 0.00038 20.7 2.4 0.0013 18.9 0.1 3.0 4 0 0 4 4 4 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|312136504|ref|YP_004003841.1| - 0.00044 19.7 0.2 0.012 15.0 0.2 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|312136504|ref|YP_004003841.1| - 0.00056 20.2 0.1 0.0018 18.5 0.1 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|312136504|ref|YP_004003841.1| - 0.00063 20.4 1.3 0.024 15.3 0.0 3.1 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|312136504|ref|YP_004003841.1| - 0.0027 18.2 0.1 0.011 16.1 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|312136504|ref|YP_004003841.1| - 0.035 14.9 0.2 0.27 12.1 0.0 2.4 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.21 gi|312136504|ref|YP_004003841.1| - 0.053 13.6 0.1 3.2 7.8 0.1 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF348 PF03990.14 gi|312136504|ref|YP_004003841.1| - 0.06 13.1 0.2 0.7 9.7 0.0 2.5 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain F420_oxidored PF03807.17 gi|312136504|ref|YP_004003841.1| - 0.075 13.6 0.1 0.85 10.3 0.1 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PglD_N PF17836.1 gi|312136504|ref|YP_004003841.1| - 0.098 13.3 0.3 0.46 11.2 0.3 2.3 1 1 0 1 1 1 0 PglD N-terminal domain NAD_binding_7 PF13241.6 gi|312136504|ref|YP_004003841.1| - 0.69 10.4 2.3 0.81 10.2 0.1 2.2 3 0 0 3 3 3 0 Putative NAD(P)-binding AP_endonuc_2 PF01261.24 gi|312136505|ref|YP_004003842.1| - 2.7e-16 59.7 0.0 3.5e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|312136505|ref|YP_004003842.1| - 0.00095 18.5 0.0 0.0038 16.5 0.0 1.9 1 1 0 1 1 1 1 UV-endonuclease UvdE Prefoldin PF02996.17 gi|312136505|ref|YP_004003842.1| - 0.0082 16.0 0.3 0.42 10.5 0.1 2.8 3 0 0 3 3 3 1 Prefoldin subunit AAA PF00004.29 gi|312136506|ref|YP_004003843.1| - 3.2e-36 124.7 0.0 6.8e-36 123.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|312136506|ref|YP_004003843.1| - 7.3e-08 32.7 0.0 2e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|312136506|ref|YP_004003843.1| - 3.2e-07 30.2 0.0 9.3e-07 28.7 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|312136506|ref|YP_004003843.1| - 3.5e-06 26.5 0.0 6.8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|312136506|ref|YP_004003843.1| - 1.1e-05 25.5 0.0 6.6e-05 22.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_3 PF17862.1 gi|312136506|ref|YP_004003843.1| - 1.3e-05 24.9 0.0 2.8e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA+ lid domain AAA_22 PF13401.6 gi|312136506|ref|YP_004003843.1| - 0.00034 20.9 0.1 0.0028 17.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|312136506|ref|YP_004003843.1| - 0.0005 19.5 0.1 0.0012 18.3 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|312136506|ref|YP_004003843.1| - 0.0011 19.4 0.0 0.013 15.9 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|312136506|ref|YP_004003843.1| - 0.0018 17.5 0.0 0.0041 16.3 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|312136506|ref|YP_004003843.1| - 0.0019 18.7 0.0 0.0049 17.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|312136506|ref|YP_004003843.1| - 0.0023 18.2 0.0 0.0044 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|312136506|ref|YP_004003843.1| - 0.0057 16.6 0.0 0.13 12.2 0.0 2.6 2 1 1 3 3 3 1 NACHT domain AAA_24 PF13479.6 gi|312136506|ref|YP_004003843.1| - 0.0063 16.3 0.1 0.014 15.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|312136506|ref|YP_004003843.1| - 0.011 16.1 0.0 0.034 14.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|312136506|ref|YP_004003843.1| - 0.012 15.7 0.0 0.029 14.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|312136506|ref|YP_004003843.1| - 0.02 14.4 0.0 0.057 12.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|312136506|ref|YP_004003843.1| - 0.028 14.3 0.3 0.39 10.5 0.3 2.2 1 1 0 1 1 1 0 Bacterial dnaA protein IstB_IS21 PF01695.17 gi|312136506|ref|YP_004003843.1| - 0.038 13.7 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|312136506|ref|YP_004003843.1| - 0.053 12.9 0.0 2 7.7 0.0 2.6 2 0 0 2 2 2 0 KaiC Parvo_NS1 PF01057.17 gi|312136506|ref|YP_004003843.1| - 0.056 12.5 0.1 0.15 11.2 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|312136506|ref|YP_004003843.1| - 0.057 13.3 0.0 0.15 12.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|312136506|ref|YP_004003843.1| - 0.057 13.0 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|312136506|ref|YP_004003843.1| - 0.19 11.0 1.0 0.41 9.8 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Nitroreductase PF00881.24 gi|312136507|ref|YP_004003844.1| - 7e-38 130.3 0.4 4.5e-18 65.9 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|312136507|ref|YP_004003844.1| - 1.1e-16 61.1 0.0 7.5e-05 22.4 0.1 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase GDP_Man_Dehyd PF16363.5 gi|312136508|ref|YP_004003845.1| - 6.6e-93 311.7 0.0 1.7e-68 231.5 0.0 2.2 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|312136508|ref|YP_004003845.1| - 5.3e-67 225.8 0.0 2.8e-48 164.5 0.0 2.3 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|312136508|ref|YP_004003845.1| - 6.7e-17 61.4 0.0 1.1e-09 37.7 0.0 2.3 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|312136508|ref|YP_004003845.1| - 2.3e-14 53.2 0.0 1.4e-11 44.0 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|312136508|ref|YP_004003845.1| - 4.8e-13 48.9 0.0 6.6e-06 25.5 0.0 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Intein_splicing PF14890.6 gi|312136508|ref|YP_004003845.1| - 1.1e-12 48.1 0.3 1.4e-11 44.5 0.0 2.8 2 1 0 2 2 2 1 Intein splicing domain NAD_binding_4 PF07993.12 gi|312136508|ref|YP_004003845.1| - 4.2e-11 42.5 0.0 6.7e-08 32.0 0.0 2.8 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|312136508|ref|YP_004003845.1| - 0.0032 17.4 0.0 0.23 11.4 0.0 2.2 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|312136508|ref|YP_004003845.1| - 0.0034 16.9 0.0 3.8 6.9 0.0 2.9 3 0 0 3 3 3 2 short chain dehydrogenase NmrA PF05368.13 gi|312136508|ref|YP_004003845.1| - 0.056 13.0 0.0 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family dTDP_sugar_isom PF00908.17 gi|312136509|ref|YP_004003846.1| - 3e-77 258.1 0.0 3.4e-77 257.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Alpha_kinase PF02816.18 gi|312136509|ref|YP_004003846.1| - 0.013 15.6 0.4 0.018 15.1 0.4 1.4 1 1 0 1 1 1 0 Alpha-kinase family PcrB PF01884.17 gi|312136510|ref|YP_004003847.1| - 7.4e-75 251.3 0.9 8.4e-75 251.1 0.9 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|312136510|ref|YP_004003847.1| - 4.9e-10 39.2 0.1 8.8e-10 38.4 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|312136510|ref|YP_004003847.1| - 5e-06 26.0 0.3 1.7e-05 24.3 0.3 1.8 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|312136510|ref|YP_004003847.1| - 2.3e-05 23.4 0.6 9.3e-05 21.4 0.3 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DHO_dh PF01180.21 gi|312136510|ref|YP_004003847.1| - 2.9e-05 23.4 1.1 4e-05 23.0 0.3 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|312136510|ref|YP_004003847.1| - 8.5e-05 21.7 1.3 0.0011 18.0 0.6 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|312136510|ref|YP_004003847.1| - 0.00015 21.1 0.4 0.00082 18.6 0.2 2.0 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|312136510|ref|YP_004003847.1| - 0.0011 18.0 0.8 0.0034 16.5 0.1 2.0 2 1 1 3 3 3 1 FMN-dependent dehydrogenase Dus PF01207.17 gi|312136510|ref|YP_004003847.1| - 0.0018 17.4 0.1 0.056 12.5 0.2 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|312136510|ref|YP_004003847.1| - 0.0022 17.3 0.6 0.0092 15.3 0.1 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|312136510|ref|YP_004003847.1| - 0.0023 17.3 0.3 0.0089 15.4 0.1 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|312136510|ref|YP_004003847.1| - 0.0029 17.0 0.3 0.0051 16.2 0.3 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.21 gi|312136510|ref|YP_004003847.1| - 0.0032 16.7 0.3 0.01 15.0 0.1 1.9 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase HMGL-like PF00682.19 gi|312136510|ref|YP_004003847.1| - 0.0063 16.1 0.1 0.022 14.3 0.1 1.7 2 0 0 2 2 2 1 HMGL-like PEP_mutase PF13714.6 gi|312136510|ref|YP_004003847.1| - 0.013 15.0 0.0 0.32 10.4 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase NMO PF03060.15 gi|312136510|ref|YP_004003847.1| - 0.021 14.2 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase QRPTase_C PF01729.19 gi|312136510|ref|YP_004003847.1| - 0.033 14.0 0.1 0.83 9.4 0.1 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain HEPN PF05168.14 gi|312136510|ref|YP_004003847.1| - 0.2 11.8 0.4 0.81 9.8 0.3 2.0 1 1 1 2 2 2 0 HEPN domain DUF498 PF04430.14 gi|312136511|ref|YP_004003848.1| - 1.4e-18 66.9 0.0 1.6e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) NAD_binding_7 PF13241.6 gi|312136511|ref|YP_004003848.1| - 0.11 12.9 0.8 0.44 11.0 0.5 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding MetW PF07021.12 gi|312136511|ref|YP_004003848.1| - 0.15 11.7 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Lipoprotein_19 PF13617.6 gi|312136511|ref|YP_004003848.1| - 0.34 10.7 3.0 7.1 6.5 0.1 3.0 3 0 0 3 3 3 0 YnbE-like lipoprotein Gate PF07670.14 gi|312136512|ref|YP_004003849.1| - 1.3e-09 38.3 29.6 5.9e-06 26.5 3.9 2.8 3 1 0 3 3 3 2 Nucleoside recognition RmlD_sub_bind PF04321.17 gi|312136513|ref|YP_004003850.1| - 9.7e-99 330.1 0.0 1.1e-98 329.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|312136513|ref|YP_004003850.1| - 3.8e-23 82.2 0.0 5.9e-23 81.6 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|312136513|ref|YP_004003850.1| - 1.1e-13 50.9 1.9 9.3e-11 41.2 0.5 2.2 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|312136513|ref|YP_004003850.1| - 9.7e-13 48.2 0.3 8.9e-11 41.8 0.0 2.1 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|312136513|ref|YP_004003850.1| - 1.4e-11 44.1 0.9 1.3e-08 34.4 0.1 2.9 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|312136513|ref|YP_004003850.1| - 1.3e-10 40.9 0.3 1.6e-07 30.8 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein DXP_reductoisom PF02670.16 gi|312136513|ref|YP_004003850.1| - 0.0041 17.8 0.0 0.0076 17.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Semialdhyde_dh PF01118.24 gi|312136513|ref|YP_004003850.1| - 0.034 14.6 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|312136513|ref|YP_004003850.1| - 0.13 12.4 0.1 0.28 11.3 0.1 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.23 gi|312136514|ref|YP_004003851.1| - 1.6e-67 227.7 0.0 1.9e-67 227.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|312136514|ref|YP_004003851.1| - 1e-10 42.2 0.0 1.3e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ribosomal_L40e PF01020.17 gi|312136515|ref|YP_004003852.1| - 6.1e-05 22.8 5.8 6.8e-05 22.7 5.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|312136515|ref|YP_004003852.1| - 0.0011 18.6 4.5 0.0016 18.1 4.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|312136515|ref|YP_004003852.1| - 0.0018 18.2 0.7 0.0019 18.2 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|312136515|ref|YP_004003852.1| - 0.0047 16.3 2.8 0.0059 16.0 2.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribo_biogen_C PF04034.13 gi|312136516|ref|YP_004003853.1| - 2.4e-47 159.8 0.0 2.9e-47 159.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|312136516|ref|YP_004003853.1| - 1.8e-06 27.6 0.2 3.5e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI VWA_2 PF13519.6 gi|312136517|ref|YP_004003854.1| - 2.4e-14 53.9 0.0 4.4e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|312136517|ref|YP_004003854.1| - 7.7e-14 52.3 0.1 1.1e-13 51.9 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|312136517|ref|YP_004003854.1| - 2.4e-08 34.1 0.0 3.4e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|312136517|ref|YP_004003854.1| - 8.2e-06 25.4 0.0 4.7e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.9 gi|312136517|ref|YP_004003854.1| - 0.0025 18.0 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 vWA found in TerF C terminus DUF444 PF04285.12 gi|312136517|ref|YP_004003854.1| - 0.049 12.7 0.1 0.085 11.9 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF444) Copine PF07002.16 gi|312136517|ref|YP_004003854.1| - 0.051 13.0 0.0 0.084 12.3 0.0 1.3 1 0 0 1 1 1 0 Copine DUF2849 PF11011.8 gi|312136517|ref|YP_004003854.1| - 0.06 14.0 0.1 0.14 12.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2849) Radical_SAM PF04055.21 gi|312136517|ref|YP_004003854.1| - 0.081 13.3 0.1 0.59 10.5 0.0 2.1 1 1 1 2 2 2 0 Radical SAM superfamily AAA_lid_2 PF17863.1 gi|312136518|ref|YP_004003855.1| - 2.3e-17 62.6 0.0 4.2e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|312136518|ref|YP_004003855.1| - 4.6e-11 42.5 0.2 3.4e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|312136518|ref|YP_004003855.1| - 2.3e-09 37.3 0.0 0.00034 20.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|312136518|ref|YP_004003855.1| - 6.1e-05 22.2 0.3 0.0064 15.6 0.0 3.0 2 1 0 2 2 2 1 MCM P-loop domain AAA_16 PF13191.6 gi|312136518|ref|YP_004003855.1| - 7.5e-05 23.2 0.1 0.00031 21.2 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain TIP49_C PF17856.1 gi|312136518|ref|YP_004003855.1| - 0.00039 20.5 1.0 0.0017 18.4 1.0 2.2 1 0 0 1 1 1 1 TIP49 AAA-lid domain Sigma54_activat PF00158.26 gi|312136518|ref|YP_004003855.1| - 0.00067 19.4 0.3 1.6 8.4 0.0 2.8 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA PF00004.29 gi|312136518|ref|YP_004003855.1| - 0.0013 19.2 0.5 0.0052 17.2 0.1 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|312136518|ref|YP_004003855.1| - 0.0018 18.5 0.1 0.01 16.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|312136518|ref|YP_004003855.1| - 0.0032 17.3 0.0 1.3 8.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase_C PF13335.6 gi|312136518|ref|YP_004003855.1| - 0.016 15.8 0.4 0.016 15.8 0.4 2.1 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_30 PF13604.6 gi|312136518|ref|YP_004003855.1| - 0.019 14.7 0.8 0.16 11.7 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|312136518|ref|YP_004003855.1| - 0.037 13.8 0.5 0.088 12.6 0.4 1.7 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_6 PF12774.7 gi|312136518|ref|YP_004003855.1| - 0.042 12.8 0.0 0.088 11.8 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region CbiA PF01656.23 gi|312136518|ref|YP_004003855.1| - 0.049 13.7 0.0 0.12 12.4 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|312136518|ref|YP_004003855.1| - 0.053 13.9 0.1 0.18 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|312136518|ref|YP_004003855.1| - 0.069 13.1 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain TFIID-31kDa PF02291.15 gi|312136518|ref|YP_004003855.1| - 0.078 13.1 0.2 0.21 11.7 0.1 1.8 2 0 0 2 2 1 0 Transcription initiation factor IID, 31kD subunit TsaE PF02367.17 gi|312136518|ref|YP_004003855.1| - 0.092 12.7 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|312136518|ref|YP_004003855.1| - 0.14 12.7 0.1 0.14 12.7 0.1 2.4 2 2 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|312136518|ref|YP_004003855.1| - 0.6 9.9 3.9 4.2 7.1 3.9 2.4 1 1 0 1 1 1 0 AAA domain TP6A_N PF04406.14 gi|312136519|ref|YP_004003856.1| - 5.2e-17 61.6 0.0 9.4e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|312136520|ref|YP_004003857.1| - 4.7e-59 198.8 0.1 7.1e-59 198.2 0.1 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|312136520|ref|YP_004003857.1| - 4.7e-12 46.4 0.0 9.3e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|312136520|ref|YP_004003857.1| - 5.5e-07 29.5 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KH_1 PF00013.29 gi|312136521|ref|YP_004003858.1| - 8.5e-14 51.1 10.0 3.5e-08 33.1 0.5 2.5 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|312136521|ref|YP_004003858.1| - 2.5e-06 27.5 0.1 9.3e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Krr1 KH1 domain KH_2 PF07650.17 gi|312136521|ref|YP_004003858.1| - 0.00012 21.8 10.1 0.0092 15.8 0.4 3.2 2 2 1 3 3 3 2 KH domain KH_4 PF13083.6 gi|312136521|ref|YP_004003858.1| - 0.00081 19.2 2.5 0.89 9.5 0.7 2.9 2 0 0 2 2 2 2 KH domain RIO1 PF01163.22 gi|312136522|ref|YP_004003859.1| - 3.1e-59 199.7 0.2 5.6e-59 198.9 0.2 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase_fungal PF17667.1 gi|312136522|ref|YP_004003859.1| - 0.0049 15.7 0.3 0.0079 15.0 0.3 1.3 1 0 0 1 1 1 1 Fungal protein kinase YrbL-PhoP_reg PF10707.9 gi|312136522|ref|YP_004003859.1| - 0.0069 15.9 0.0 0.081 12.4 0.0 2.1 2 0 0 2 2 2 1 PhoP regulatory network protein YrbL APH PF01636.23 gi|312136522|ref|YP_004003859.1| - 0.0089 16.0 0.1 0.076 12.9 0.1 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family TetR_C_4 PF08359.11 gi|312136522|ref|YP_004003859.1| - 0.085 13.0 0.3 0.2 11.8 0.3 1.7 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region Kdo PF06293.14 gi|312136522|ref|YP_004003859.1| - 0.089 12.1 0.1 1 8.6 0.0 2.4 2 1 1 3 3 3 0 Lipopolysaccharide kinase (Kdo/WaaP) family eIF-1a PF01176.19 gi|312136523|ref|YP_004003860.1| - 3e-22 78.2 1.3 3e-22 78.2 1.3 1.5 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Myosin_N PF02736.19 gi|312136523|ref|YP_004003860.1| - 0.027 14.3 1.9 0.6 10.0 0.0 2.8 2 1 1 3 3 3 0 Myosin N-terminal SH3-like domain BPL_C PF02237.17 gi|312136523|ref|YP_004003860.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain MoeA_N PF03453.17 gi|312136524|ref|YP_004003861.1| - 1.4e-42 145.2 0.0 2.1e-42 144.5 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|312136524|ref|YP_004003861.1| - 1.7e-27 95.9 0.4 2.6e-27 95.3 0.4 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|312136524|ref|YP_004003861.1| - 4.8e-13 49.1 0.0 1.4e-12 47.6 0.0 1.8 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) T2SSE PF00437.20 gi|312136524|ref|YP_004003861.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiJ PF02571.14 gi|312136525|ref|YP_004003862.1| - 1.3e-72 244.1 0.0 1.6e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK NAD_binding_10 PF13460.6 gi|312136525|ref|YP_004003862.1| - 0.0016 18.4 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding ADH_zinc_N PF00107.26 gi|312136525|ref|YP_004003862.1| - 0.0044 17.0 0.7 0.018 15.0 0.1 2.2 3 0 0 3 3 3 1 Zinc-binding dehydrogenase Peripla_BP_4 PF13407.6 gi|312136525|ref|YP_004003862.1| - 0.008 15.8 0.0 0.037 13.6 0.0 2.2 1 1 0 1 1 1 1 Periplasmic binding protein domain Glycos_transf_N PF04413.16 gi|312136525|ref|YP_004003862.1| - 0.0095 15.6 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AP_endonuc_2 PF01261.24 gi|312136525|ref|YP_004003862.1| - 0.011 15.2 0.1 0.48 9.8 0.0 2.5 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel Response_reg PF00072.24 gi|312136525|ref|YP_004003862.1| - 0.017 15.3 0.5 0.069 13.3 0.0 2.2 2 1 1 3 3 3 0 Response regulator receiver domain DapB_N PF01113.20 gi|312136525|ref|YP_004003862.1| - 0.019 15.1 0.3 0.061 13.5 0.1 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Amidase PF01425.21 gi|312136525|ref|YP_004003862.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Amidase E1-E2_ATPase PF00122.20 gi|312136526|ref|YP_004003863.1| - 4.9e-56 189.1 11.4 1.6e-55 187.4 2.2 3.3 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|312136526|ref|YP_004003863.1| - 6.8e-42 143.2 8.7 6.8e-42 143.2 8.7 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase PF13246.6 gi|312136526|ref|YP_004003863.1| - 1.5e-25 89.1 0.1 4.8e-25 87.5 0.1 1.9 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase PF00702.26 gi|312136526|ref|YP_004003863.1| - 4.7e-25 89.1 0.2 1.1e-24 87.9 0.2 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|312136526|ref|YP_004003863.1| - 8.2e-17 60.7 0.1 1.8e-16 59.5 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|312136526|ref|YP_004003863.1| - 6.8e-07 29.3 8.7 2e-06 27.7 0.8 3.6 4 0 0 4 4 4 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|312136526|ref|YP_004003863.1| - 0.00029 21.3 0.0 0.00068 20.1 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase TFIIF_alpha PF05793.12 gi|312136526|ref|YP_004003863.1| - 0.074 11.6 0.7 0.14 10.7 0.7 1.4 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) HTH_24 PF13412.6 gi|312136526|ref|YP_004003863.1| - 0.16 11.5 0.6 12 5.5 0.0 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding UPF0146 PF03686.13 gi|312136527|ref|YP_004003864.1| - 5.1e-38 129.9 0.6 5.9e-38 129.7 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Acetyltransf_1 PF00583.25 gi|312136528|ref|YP_004003865.1| - 1.6e-23 83.2 0.1 1.9e-23 82.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|312136528|ref|YP_004003865.1| - 3.1e-18 65.9 0.1 3.5e-18 65.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|312136528|ref|YP_004003865.1| - 7e-17 61.6 0.4 9.4e-17 61.2 0.4 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|312136528|ref|YP_004003865.1| - 1.6e-12 47.2 0.1 2.2e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|312136528|ref|YP_004003865.1| - 2.9e-09 37.3 1.4 3.7e-09 36.9 1.0 1.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|312136528|ref|YP_004003865.1| - 5e-08 33.7 0.1 1.2e-07 32.5 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|312136528|ref|YP_004003865.1| - 9.2e-05 22.2 0.0 0.00012 21.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|312136528|ref|YP_004003865.1| - 0.0001 22.4 0.0 0.00016 21.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|312136528|ref|YP_004003865.1| - 0.00011 21.7 0.4 0.00017 21.1 0.4 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|312136528|ref|YP_004003865.1| - 0.00019 21.1 0.0 0.0013 18.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|312136528|ref|YP_004003865.1| - 0.00057 20.0 0.0 0.0076 16.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|312136528|ref|YP_004003865.1| - 0.0033 17.6 0.0 0.0047 17.1 0.0 1.2 1 0 0 1 1 1 1 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region RVT_3 PF13456.6 gi|312136528|ref|YP_004003865.1| - 0.012 15.4 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like GNAT_acetyltran PF12746.7 gi|312136528|ref|YP_004003865.1| - 0.017 14.7 0.1 0.023 14.3 0.1 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_18 PF18014.1 gi|312136528|ref|YP_004003865.1| - 0.036 13.9 0.2 0.15 11.9 0.2 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|312136528|ref|YP_004003865.1| - 0.047 13.7 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase YonK PF09642.10 gi|312136528|ref|YP_004003865.1| - 0.055 13.6 0.3 0.15 12.2 0.1 1.8 2 0 0 2 2 2 0 YonK protein MxiM PF11441.8 gi|312136528|ref|YP_004003865.1| - 0.09 13.1 1.6 0.13 12.6 1.3 1.6 1 1 1 2 2 2 0 Pilot protein MxiM DUF2156 PF09924.9 gi|312136528|ref|YP_004003865.1| - 0.14 11.2 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) CPSase_sm_chain PF00988.22 gi|312136529|ref|YP_004003866.1| - 1.2e-50 170.6 0.0 1.9e-50 170.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|312136529|ref|YP_004003866.1| - 1.2e-47 162.2 0.0 1.6e-47 161.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|312136529|ref|YP_004003866.1| - 1.5e-10 41.2 0.0 2.9e-08 33.7 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 RRM_1 PF00076.22 gi|312136529|ref|YP_004003866.1| - 0.022 14.6 0.0 0.075 12.9 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CPSase_L_D2 PF02786.17 gi|312136530|ref|YP_004003867.1| - 6.9e-118 391.7 0.4 4.2e-77 258.4 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|312136530|ref|YP_004003867.1| - 3.5e-45 153.3 5.1 1.4e-44 151.3 2.3 3.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|312136530|ref|YP_004003867.1| - 2.7e-24 85.6 0.2 1.6e-11 44.1 0.1 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|312136530|ref|YP_004003867.1| - 7.6e-21 74.6 0.4 1.7e-09 37.5 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus MGS PF02142.22 gi|312136530|ref|YP_004003867.1| - 2.1e-19 69.5 0.6 6.6e-18 64.7 0.3 3.7 4 0 0 4 4 2 1 MGS-like domain ATP-grasp_3 PF02655.14 gi|312136530|ref|YP_004003867.1| - 1.1e-14 54.8 2.2 9.8e-07 29.0 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|312136530|ref|YP_004003867.1| - 1.4e-13 50.7 0.0 1.3e-05 25.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|312136530|ref|YP_004003867.1| - 3.3e-13 49.8 0.9 5.2e-06 26.4 0.0 2.7 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|312136530|ref|YP_004003867.1| - 2.7e-09 36.9 0.5 0.0035 17.0 0.0 3.5 3 1 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|312136530|ref|YP_004003867.1| - 7.9e-08 32.0 0.0 0.0019 17.7 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|312136530|ref|YP_004003867.1| - 1.4e-06 28.0 0.1 0.031 13.9 0.1 2.9 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|312136530|ref|YP_004003867.1| - 1.1e-05 25.1 0.8 0.2 11.2 0.0 3.4 3 1 0 3 3 3 2 ATP-grasp domain HTH_23 PF13384.6 gi|312136530|ref|YP_004003867.1| - 0.00028 20.6 1.4 0.0056 16.4 0.1 3.3 4 0 0 4 4 3 1 Homeodomain-like domain B12-binding PF02310.19 gi|312136530|ref|YP_004003867.1| - 0.0031 17.5 0.1 0.58 10.2 0.0 3.2 3 0 0 3 3 3 1 B12 binding domain DUF5603 PF18231.1 gi|312136530|ref|YP_004003867.1| - 0.025 14.9 4.1 0.77 10.1 0.1 3.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5603) HTH_3 PF01381.22 gi|312136530|ref|YP_004003867.1| - 0.1 12.7 0.8 1.1 9.4 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix HTH_11 PF08279.12 gi|312136530|ref|YP_004003867.1| - 0.13 12.2 0.2 4.5 7.3 0.0 3.5 3 0 0 3 3 3 0 HTH domain HTH_17 PF12728.7 gi|312136530|ref|YP_004003867.1| - 0.13 12.4 0.1 0.47 10.7 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain Isochorismatase PF00857.20 gi|312136530|ref|YP_004003867.1| - 0.17 12.1 0.1 0.95 9.6 0.0 2.3 2 0 0 2 2 2 0 Isochorismatase family Robl_LC7 PF03259.17 gi|312136531|ref|YP_004003868.1| - 1.3e-19 69.7 0.3 1.6e-19 69.5 0.3 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF1611 PF07755.11 gi|312136532|ref|YP_004003869.1| - 3.3e-59 199.6 0.0 4.7e-59 199.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|312136532|ref|YP_004003869.1| - 4.5e-14 52.4 0.0 1.8e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain CoA_binding PF02629.19 gi|312136532|ref|YP_004003869.1| - 0.0062 17.2 0.1 0.035 14.8 0.0 2.3 3 0 0 3 3 3 1 CoA binding domain NAD_binding_3 PF03447.16 gi|312136532|ref|YP_004003869.1| - 0.036 14.7 0.0 0.14 12.9 0.0 2.0 1 1 1 2 2 2 0 Homoserine dehydrogenase, NAD binding domain SepF PF04472.12 gi|312136533|ref|YP_004003870.1| - 1e-10 41.7 0.3 1.4e-10 41.2 0.3 1.2 1 0 0 1 1 1 1 Cell division protein SepF DUF2226 PF09987.9 gi|312136534|ref|YP_004003871.1| - 2.7e-12 46.7 27.8 1.2e-06 28.1 18.6 2.9 1 1 2 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2226) DUF4388 PF14332.6 gi|312136534|ref|YP_004003871.1| - 0.0021 18.3 0.0 0.0033 17.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) Y1_Tnp PF01797.16 gi|312136534|ref|YP_004003871.1| - 0.01 15.9 1.3 0.01 15.9 1.3 2.8 3 0 0 3 3 3 0 Transposase IS200 like Spore_YhcN_YlaJ PF09580.10 gi|312136534|ref|YP_004003871.1| - 0.12 12.4 0.7 0.51 10.4 0.7 2.0 1 1 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) ParA PF10609.9 gi|312136535|ref|YP_004003872.1| - 1.8e-27 96.4 3.3 5.2e-27 94.9 3.3 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|312136535|ref|YP_004003872.1| - 4.1e-27 94.8 0.0 1.8e-26 92.7 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|312136535|ref|YP_004003872.1| - 2.5e-20 73.2 0.3 3.6e-20 72.6 0.3 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|312136535|ref|YP_004003872.1| - 1.5e-14 54.0 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|312136535|ref|YP_004003872.1| - 1.7e-12 47.4 0.9 1.6e-06 27.8 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|312136535|ref|YP_004003872.1| - 2.2e-08 34.2 6.5 5.2e-07 29.7 0.7 2.5 2 1 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|312136535|ref|YP_004003872.1| - 7.1e-08 32.0 3.3 4.3e-07 29.4 1.4 2.2 1 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|312136535|ref|YP_004003872.1| - 1.1e-06 28.1 4.1 1.2e-05 24.7 4.1 2.4 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|312136535|ref|YP_004003872.1| - 0.014 15.0 1.3 0.12 12.0 0.3 2.1 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|312136535|ref|YP_004003872.1| - 0.023 14.6 0.1 0.041 13.8 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase VirC1 PF07015.11 gi|312136535|ref|YP_004003872.1| - 0.024 13.9 0.2 0.056 12.7 0.2 1.5 1 0 0 1 1 1 0 VirC1 protein PhoH PF02562.16 gi|312136535|ref|YP_004003872.1| - 0.16 11.4 0.3 1.1 8.7 0.3 2.0 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.22 gi|312136535|ref|YP_004003872.1| - 0.28 10.8 2.0 0.39 10.3 0.5 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PfkB PF00294.24 gi|312136536|ref|YP_004003873.1| - 1e-62 212.2 0.0 1.1e-62 212.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|312136536|ref|YP_004003873.1| - 5.8e-07 29.1 0.1 8.4e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PEPcase_2 PF14010.6 gi|312136537|ref|YP_004003874.1| - 2.3e-188 626.7 0.5 2.6e-188 626.5 0.5 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase BofC_C PF08955.10 gi|312136538|ref|YP_004003875.1| - 0.054 13.6 0.3 0.15 12.1 0.1 1.9 1 1 0 1 1 1 0 BofC C-terminal domain DUF5446 PF17522.2 gi|312136538|ref|YP_004003875.1| - 0.15 12.2 4.2 0.14 12.4 0.9 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5446) Med4 PF10018.9 gi|312136538|ref|YP_004003875.1| - 0.88 9.2 5.8 2.5 7.8 0.2 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 IL3 PF02059.15 gi|312136538|ref|YP_004003875.1| - 1.8 8.7 7.6 0.46 10.6 1.4 2.2 1 1 1 2 2 2 0 Interleukin-3 THUMP PF02926.17 gi|312136539|ref|YP_004003876.1| - 2.7e-13 50.3 5.3 3.1e-13 50.0 5.3 1.1 1 0 0 1 1 1 1 THUMP domain BioY PF02632.14 gi|312136540|ref|YP_004003877.1| - 1.2e-35 122.5 18.6 1.2e-35 122.5 18.6 1.5 2 0 0 2 2 2 1 BioY family PRA1 PF03208.19 gi|312136540|ref|YP_004003877.1| - 1.1 8.9 5.0 42 3.7 5.0 2.2 1 1 0 1 1 1 0 PRA1 family protein Shikimate_DH PF01488.20 gi|312136541|ref|YP_004003878.1| - 8.1e-43 145.8 0.6 8.1e-43 145.8 0.6 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|312136541|ref|YP_004003878.1| - 2.9e-33 114.7 1.0 6.5e-33 113.6 0.1 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|312136541|ref|YP_004003878.1| - 2.2e-21 76.1 8.0 6.7e-21 74.6 8.0 1.9 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|312136541|ref|YP_004003878.1| - 3.8e-08 33.8 0.4 3.8e-08 33.8 0.4 2.9 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|312136541|ref|YP_004003878.1| - 6.6e-07 29.0 0.1 1.3e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus NAD_binding_2 PF03446.15 gi|312136541|ref|YP_004003878.1| - 7.8e-07 29.4 1.2 1.4e-06 28.5 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|312136541|ref|YP_004003878.1| - 3.3e-06 26.6 0.4 9.4e-06 25.1 0.1 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|312136541|ref|YP_004003878.1| - 1.2e-05 25.7 2.7 1.2e-05 25.7 0.2 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding IlvN PF07991.12 gi|312136541|ref|YP_004003878.1| - 0.00026 20.6 0.0 0.00065 19.3 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|312136541|ref|YP_004003878.1| - 0.00029 20.9 0.1 0.00085 19.4 0.1 1.8 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|312136541|ref|YP_004003878.1| - 0.00088 18.6 3.9 0.0098 15.2 1.9 3.0 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|312136541|ref|YP_004003878.1| - 0.0011 19.2 0.2 0.0011 19.2 0.2 3.0 2 2 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|312136541|ref|YP_004003878.1| - 0.0054 16.1 1.4 0.016 14.6 0.3 2.2 3 0 0 3 3 3 1 ThiF family ApbA PF02558.16 gi|312136541|ref|YP_004003878.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA OCD_Mu_crystall PF02423.15 gi|312136541|ref|YP_004003878.1| - 0.0091 15.0 0.1 0.0091 15.0 0.1 1.7 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.22 gi|312136541|ref|YP_004003878.1| - 0.029 15.2 1.5 0.089 13.6 0.0 2.5 2 1 1 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold Malic_M PF03949.15 gi|312136541|ref|YP_004003878.1| - 0.038 13.3 2.4 0.76 9.0 0.3 2.5 1 1 1 2 2 2 0 Malic enzyme, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|312136541|ref|YP_004003878.1| - 0.05 13.6 0.8 0.3 11.1 0.1 2.7 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|312136541|ref|YP_004003878.1| - 0.058 13.7 1.6 0.23 11.8 0.5 2.7 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|312136541|ref|YP_004003878.1| - 0.058 13.3 0.2 0.058 13.3 0.2 4.0 3 1 1 4 4 4 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|312136541|ref|YP_004003878.1| - 0.084 13.3 2.0 0.18 12.3 0.1 2.5 2 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain ECH_2 PF16113.5 gi|312136541|ref|YP_004003878.1| - 0.096 12.2 2.1 0.44 10.0 0.8 2.1 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase HrpE PF06188.12 gi|312136541|ref|YP_004003878.1| - 0.25 11.2 2.0 0.27 11.1 0.6 1.8 2 0 0 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Nitro_FeMo-Co PF02579.17 gi|312136541|ref|YP_004003878.1| - 1.2 9.5 5.1 0.91 9.9 0.3 2.8 3 0 0 3 3 2 0 Dinitrogenase iron-molybdenum cofactor AAA_11 PF13086.6 gi|312136541|ref|YP_004003878.1| - 2 8.1 9.9 0.58 9.9 6.8 1.7 2 0 0 2 2 2 0 AAA domain NAD_binding_7 PF13241.6 gi|312136542|ref|YP_004003879.1| - 7.4e-20 71.3 0.2 1.5e-19 70.4 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|312136542|ref|YP_004003879.1| - 1.7e-05 24.9 2.4 0.00016 21.7 0.2 2.9 2 2 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|312136542|ref|YP_004003879.1| - 4e-05 23.1 0.0 7.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|312136542|ref|YP_004003879.1| - 4.5e-05 23.1 0.0 8.9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|312136542|ref|YP_004003879.1| - 0.0002 21.9 0.1 0.00053 20.5 0.1 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CysG_dimeriser PF10414.9 gi|312136542|ref|YP_004003879.1| - 0.0007 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region Sirohm_synth_M PF14824.6 gi|312136542|ref|YP_004003879.1| - 0.00079 18.8 0.0 0.0017 17.8 0.0 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central CRISPR_Cas2 PF09827.9 gi|312136542|ref|YP_004003879.1| - 0.031 14.4 1.1 0.14 12.3 0.1 2.6 2 1 1 3 3 3 0 CRISPR associated protein Cas2 FMN_red PF03358.15 gi|312136542|ref|YP_004003879.1| - 0.057 13.1 0.0 5.6 6.7 0.0 2.2 2 0 0 2 2 2 0 NADPH-dependent FMN reductase ELFV_dehydrog PF00208.21 gi|312136542|ref|YP_004003879.1| - 0.078 12.7 0.1 0.15 11.7 0.1 1.6 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Semialdhyde_dh PF01118.24 gi|312136542|ref|YP_004003879.1| - 0.099 13.1 0.1 1.2 9.6 0.1 2.2 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Endotoxin_C2 PF18449.1 gi|312136542|ref|YP_004003879.1| - 0.13 12.7 4.1 4.7 7.6 0.0 2.8 2 1 1 3 3 3 0 Delta endotoxin Antimicrobial_7 PF08102.11 gi|312136542|ref|YP_004003879.1| - 3.9 7.8 7.6 0.8 10.0 0.7 2.9 2 0 0 2 2 2 0 Scorpion antimicrobial peptide HTH_6 PF01418.17 gi|312136543|ref|YP_004003880.1| - 0.011 15.7 0.3 0.017 15.1 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF1296 PF06972.11 gi|312136543|ref|YP_004003880.1| - 0.015 15.4 1.9 0.11 12.7 0.3 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1296) Med11 PF10280.9 gi|312136543|ref|YP_004003880.1| - 0.022 15.2 0.6 0.031 14.7 0.6 1.1 1 0 0 1 1 1 0 Mediator complex protein GrpB PF04229.14 gi|312136543|ref|YP_004003880.1| - 0.036 14.2 1.3 1.6 8.9 0.7 2.3 2 1 0 2 2 2 0 GrpB protein GIT_CC PF16559.5 gi|312136543|ref|YP_004003880.1| - 0.071 13.0 1.1 0.73 9.8 0.2 2.2 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Integrase_Zn PF02022.19 gi|312136543|ref|YP_004003880.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Integrase Zinc binding domain ABC_tran PF00005.27 gi|312136544|ref|YP_004003881.1| - 1.8e-55 187.2 0.0 2.1e-28 99.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter RsgA_GTPase PF03193.16 gi|312136544|ref|YP_004003881.1| - 9e-08 32.2 0.2 0.00069 19.6 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|312136544|ref|YP_004003881.1| - 7.4e-07 28.8 2.5 0.13 11.7 0.0 3.7 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|312136544|ref|YP_004003881.1| - 3.4e-05 24.1 0.1 0.51 10.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 gi|312136544|ref|YP_004003881.1| - 7.3e-05 22.8 0.7 0.17 12.0 0.1 3.1 3 0 0 3 3 3 2 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|312136544|ref|YP_004003881.1| - 0.00011 22.8 0.5 0.31 11.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|312136544|ref|YP_004003881.1| - 0.00012 22.0 1.1 4 7.1 0.1 3.9 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|312136544|ref|YP_004003881.1| - 0.00015 21.5 1.1 0.14 11.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|312136544|ref|YP_004003881.1| - 0.00029 20.5 0.0 0.21 11.2 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 gi|312136544|ref|YP_004003881.1| - 0.00049 20.5 0.3 1.5 9.2 0.3 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.6 gi|312136544|ref|YP_004003881.1| - 0.0027 18.2 0.6 2.4 8.7 0.1 3.1 3 1 0 3 3 3 1 AAA domain SbcCD_C PF13558.6 gi|312136544|ref|YP_004003881.1| - 0.0031 17.7 0.0 1 9.6 0.0 3.5 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|312136544|ref|YP_004003881.1| - 0.0043 16.8 0.2 5.1 6.8 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|312136544|ref|YP_004003881.1| - 0.0061 16.7 1.0 0.18 12.0 0.1 2.7 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|312136544|ref|YP_004003881.1| - 0.0068 15.6 1.9 1.7 7.7 0.2 2.5 2 0 0 2 2 2 2 NB-ARC domain cobW PF02492.19 gi|312136544|ref|YP_004003881.1| - 0.0077 15.8 2.8 7.3 6.1 0.1 3.9 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|312136544|ref|YP_004003881.1| - 0.014 14.7 0.0 5.9 6.1 0.0 2.7 3 0 0 3 3 2 0 Zeta toxin MobB PF03205.14 gi|312136544|ref|YP_004003881.1| - 0.018 14.9 0.3 1.6 8.7 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|312136544|ref|YP_004003881.1| - 0.026 13.5 0.2 0.68 8.9 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PRK PF00485.18 gi|312136544|ref|YP_004003881.1| - 0.034 13.9 0.2 5.1 6.8 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.6 gi|312136544|ref|YP_004003881.1| - 0.048 12.3 0.3 0.32 9.6 0.0 2.3 3 0 0 3 3 3 0 AAA domain Arf PF00025.21 gi|312136544|ref|YP_004003881.1| - 0.059 12.8 0.9 10 5.5 0.0 3.0 2 1 1 3 3 3 0 ADP-ribosylation factor family AAA_24 PF13479.6 gi|312136544|ref|YP_004003881.1| - 0.11 12.2 0.9 9.5 5.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|312136544|ref|YP_004003881.1| - 0.12 11.2 0.5 0.42 9.4 0.1 1.8 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DUF87 PF01935.17 gi|312136544|ref|YP_004003881.1| - 0.13 12.3 1.9 4.8 7.2 0.1 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain TsaE PF02367.17 gi|312136544|ref|YP_004003881.1| - 0.16 12.0 0.2 10 6.1 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Dus PF01207.17 gi|312136545|ref|YP_004003882.1| - 1e-17 64.3 0.1 1.4e-17 63.7 0.1 1.1 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|312136545|ref|YP_004003882.1| - 0.0018 17.8 0.0 0.0059 16.1 0.0 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein Radical_SAM PF04055.21 gi|312136545|ref|YP_004003882.1| - 0.012 16.0 0.0 0.058 13.8 0.0 2.0 1 1 2 3 3 3 0 Radical SAM superfamily GCH_III PF05165.12 gi|312136546|ref|YP_004003883.1| - 1.8e-106 355.0 0.2 2.2e-106 354.7 0.2 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III DUF3575 PF12099.8 gi|312136546|ref|YP_004003883.1| - 0.082 12.2 0.0 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) UPF0052 PF01933.18 gi|312136547|ref|YP_004003884.1| - 2.9e-45 154.7 0.1 3.6e-45 154.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF4580 PF15162.6 gi|312136547|ref|YP_004003884.1| - 0.08 12.5 0.5 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4580) F420_ligase PF01996.16 gi|312136548|ref|YP_004003885.1| - 1.4e-71 240.7 2.6 1.6e-71 240.5 2.6 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase IMP_cyclohyd PF07826.11 gi|312136549|ref|YP_004003886.1| - 9e-69 230.9 2.2 1.1e-68 230.7 2.2 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein APOBEC3 PF18771.1 gi|312136549|ref|YP_004003886.1| - 0.048 13.8 0.2 3.2 7.9 0.0 2.2 2 0 0 2 2 2 0 APOBEC3 HTH_1 PF00126.27 gi|312136550|ref|YP_004003887.1| - 1e-08 35.0 0.0 1.6e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE PF03459.17 gi|312136550|ref|YP_004003887.1| - 1.5e-07 31.6 0.1 8.7e-06 25.9 0.0 2.8 4 0 0 4 4 4 1 TOBE domain HTH_23 PF13384.6 gi|312136550|ref|YP_004003887.1| - 0.073 12.9 0.1 8.5 6.3 0.1 2.3 2 0 0 2 2 2 0 Homeodomain-like domain CysA_C_terminal PF17850.1 gi|312136550|ref|YP_004003887.1| - 0.17 12.5 0.0 0.36 11.4 0.0 1.5 1 0 0 1 1 1 0 CysA C-terminal regulatory domain IGPD PF00475.18 gi|312136551|ref|YP_004003888.1| - 1.2e-55 187.8 0.2 1.4e-55 187.6 0.2 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DUF1533 PF07550.11 gi|312136551|ref|YP_004003888.1| - 0.075 12.9 0.5 0.22 11.4 0.5 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1533) Fer4 PF00037.27 gi|312136552|ref|YP_004003889.1| - 2.5e-11 42.9 12.2 5.7e-06 25.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136552|ref|YP_004003889.1| - 3.5e-07 30.7 9.1 0.0027 18.3 1.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136552|ref|YP_004003889.1| - 3.9e-07 30.1 12.3 6.6e-07 29.4 12.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136552|ref|YP_004003889.1| - 5.6e-07 29.6 10.6 7.1e-07 29.2 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136552|ref|YP_004003889.1| - 1.3e-06 28.2 11.4 0.0027 17.7 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136552|ref|YP_004003889.1| - 2e-05 25.4 12.3 0.02 15.8 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|312136552|ref|YP_004003889.1| - 2.3e-05 24.4 12.6 6.5e-05 23.0 12.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136552|ref|YP_004003889.1| - 3.7e-05 24.1 14.2 0.0027 18.1 2.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136552|ref|YP_004003889.1| - 6e-05 22.9 13.2 0.00015 21.7 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312136552|ref|YP_004003889.1| - 0.00032 21.2 14.0 0.025 15.1 2.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136552|ref|YP_004003889.1| - 0.00037 20.8 11.6 0.00074 19.8 2.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|312136552|ref|YP_004003889.1| - 0.0078 16.7 12.4 0.12 12.9 12.4 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|312136552|ref|YP_004003889.1| - 0.064 14.2 19.1 0.18 12.8 5.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312136552|ref|YP_004003889.1| - 0.7 10.1 10.2 2.4 8.4 1.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136552|ref|YP_004003889.1| - 5 7.9 12.9 2.3 9.0 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|312136552|ref|YP_004003889.1| - 5.6 7.9 13.9 2.6 8.9 3.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTP_transf_2 PF01909.23 gi|312136553|ref|YP_004003890.1| - 9.1e-05 22.7 1.9 0.00016 21.9 0.3 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|312136553|ref|YP_004003890.1| - 0.07 13.2 2.6 0.25 11.4 0.1 2.7 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase DUF3566 PF12089.8 gi|312136555|ref|YP_004003892.1| - 0.0017 18.7 1.5 0.0019 18.5 1.5 1.1 1 0 0 1 1 1 1 Transmembrane domain of unknown function (DUF3566) SPC12 PF06645.13 gi|312136555|ref|YP_004003892.1| - 0.084 13.0 1.1 0.1 12.7 1.1 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4389 PF14333.6 gi|312136556|ref|YP_004003893.1| - 0.053 13.4 0.5 0.064 13.2 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) Wzz PF02706.15 gi|312136556|ref|YP_004003893.1| - 0.071 13.4 1.0 0.074 13.4 1.0 1.1 1 0 0 1 1 1 0 Chain length determinant protein CobN-Mg_chel PF02514.16 gi|312136557|ref|YP_004003894.1| - 1.4e-242 807.9 0.0 1.7e-104 350.7 0.0 3.0 3 0 0 3 3 3 3 CobN/Magnesium Chelatase LepA_C PF06421.12 gi|312136557|ref|YP_004003894.1| - 2.1 8.6 6.1 6.4 7.0 0.0 2.9 3 0 0 3 3 3 0 GTP-binding protein LepA C-terminus DUF3344 PF11824.8 gi|312136558|ref|YP_004003895.1| - 3.3e-75 253.3 19.0 3.3e-75 253.3 19.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) Transglut_C PF00927.22 gi|312136558|ref|YP_004003895.1| - 0.0023 18.1 0.5 0.0059 16.7 0.1 1.9 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain Flo11 PF10182.9 gi|312136558|ref|YP_004003895.1| - 0.027 14.6 2.2 0.047 13.8 0.1 2.2 2 0 0 2 2 2 0 Flo11 domain TIG PF01833.24 gi|312136558|ref|YP_004003895.1| - 0.24 11.5 2.5 0.51 10.5 0.4 2.4 2 0 0 2 2 2 0 IPT/TIG domain CbtB PF09489.10 gi|312136559|ref|YP_004003896.1| - 0.2 11.8 0.1 0.27 11.4 0.1 1.1 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) DUF169 PF02596.15 gi|312136560|ref|YP_004003897.1| - 3.1e-61 206.9 0.7 3.4e-61 206.8 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Ribosomal_L36 PF00444.18 gi|312136560|ref|YP_004003897.1| - 0.19 12.0 1.0 24 5.2 0.1 2.7 2 0 0 2 2 2 0 Ribosomal protein L36 Methyltrn_RNA_2 PF04013.12 gi|312136561|ref|YP_004003898.1| - 3.3e-60 203.2 0.0 3.8e-60 203.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.19 gi|312136561|ref|YP_004003898.1| - 0.069 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 SpoU rRNA Methylase family NTP_transf_3 PF12804.7 gi|312136562|ref|YP_004003899.1| - 5.4e-18 65.9 0.0 6.3e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|312136562|ref|YP_004003899.1| - 1.1e-10 41.9 0.1 1.3e-10 41.6 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|312136562|ref|YP_004003899.1| - 7.8e-08 32.3 0.0 9.4e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|312136562|ref|YP_004003899.1| - 0.00098 18.4 0.3 0.0014 17.9 0.3 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|312136562|ref|YP_004003899.1| - 0.0024 17.5 0.1 0.0051 16.4 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase Mur_ligase_M PF08245.12 gi|312136564|ref|YP_004003901.1| - 8.2e-22 78.1 7.8 5.3e-21 75.5 2.6 3.2 3 1 0 3 3 3 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|312136564|ref|YP_004003901.1| - 4.2e-11 42.9 0.0 1.6e-09 37.9 0.0 2.9 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain ApbA PF02558.16 gi|312136564|ref|YP_004003901.1| - 2.7e-05 23.8 0.1 0.012 15.2 0.0 2.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|312136564|ref|YP_004003901.1| - 0.0016 17.8 0.4 0.028 13.7 0.0 2.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IlvN PF07991.12 gi|312136564|ref|YP_004003901.1| - 0.0031 17.1 0.1 0.0087 15.7 0.1 1.8 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|312136564|ref|YP_004003901.1| - 0.0061 15.9 0.0 0.019 14.4 0.0 1.9 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|312136564|ref|YP_004003901.1| - 0.018 15.5 3.0 0.055 13.9 0.1 3.1 3 1 1 4 4 4 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|312136564|ref|YP_004003901.1| - 0.019 15.1 1.4 0.067 13.4 0.1 2.5 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 gi|312136564|ref|YP_004003901.1| - 0.024 14.6 0.0 0.36 10.8 0.0 2.8 2 1 1 3 3 3 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|312136564|ref|YP_004003901.1| - 0.028 13.7 0.2 0.091 12.1 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|312136564|ref|YP_004003901.1| - 0.028 14.3 0.1 0.13 12.1 0.1 2.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|312136564|ref|YP_004003901.1| - 0.039 14.2 0.1 0.18 12.1 0.1 2.2 1 0 0 1 1 1 0 TrkA-N domain Epimerase PF01370.21 gi|312136564|ref|YP_004003901.1| - 0.05 13.1 0.2 0.26 10.7 0.0 2.2 3 0 0 3 3 3 0 NAD dependent epimerase/dehydratase family DHO_dh PF01180.21 gi|312136564|ref|YP_004003901.1| - 0.25 10.5 15.1 0.37 9.9 1.3 3.2 3 1 0 4 4 4 0 Dihydroorotate dehydrogenase Mur_ligase_M PF08245.12 gi|312136565|ref|YP_004003902.1| - 1.3e-24 87.3 0.0 1.1e-22 81.0 0.0 2.5 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|312136565|ref|YP_004003902.1| - 4.3e-09 36.5 0.0 1e-08 35.3 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Pyr_redox PF00070.27 gi|312136565|ref|YP_004003902.1| - 0.015 15.9 0.0 0.12 13.0 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PCMT PF01135.19 gi|312136565|ref|YP_004003902.1| - 0.015 15.0 0.0 0.039 13.7 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pyr_redox_2 PF07992.14 gi|312136565|ref|YP_004003902.1| - 0.026 13.8 0.0 0.053 12.7 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Cyc-maltodext_C PF10438.9 gi|312136565|ref|YP_004003902.1| - 0.036 14.1 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Vps36-NZF-N PF16988.5 gi|312136565|ref|YP_004003902.1| - 0.044 13.2 0.1 0.68 9.4 0.0 2.3 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain AlaDh_PNT_C PF01262.21 gi|312136565|ref|YP_004003902.1| - 0.059 12.7 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2268 PF10026.9 gi|312136565|ref|YP_004003902.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Metallophos_2 PF12850.7 gi|312136566|ref|YP_004003903.1| - 4.8e-12 46.4 0.0 7.7e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|312136566|ref|YP_004003903.1| - 1.9e-09 38.3 0.0 3.9e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Phage_TAC_5 PF08890.11 gi|312136566|ref|YP_004003903.1| - 0.042 13.9 7.0 0.018 15.0 3.5 2.3 2 1 1 3 3 3 0 Phage XkdN-like tail assembly chaperone protein, TAC NIF3 PF01784.18 gi|312136566|ref|YP_004003903.1| - 0.063 12.9 0.1 0.082 12.5 0.0 1.3 1 1 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) AAA_15 PF13175.6 gi|312136567|ref|YP_004003904.1| - 1.4e-07 31.6 38.3 1.4e-07 31.6 38.3 4.4 1 1 3 4 4 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|312136567|ref|YP_004003904.1| - 1.6e-06 27.7 0.0 2.9e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|312136567|ref|YP_004003904.1| - 4e-06 26.4 0.1 4e-06 26.4 0.1 3.9 3 2 0 3 3 1 1 RecF/RecN/SMC N terminal domain Laminin_II PF06009.12 gi|312136567|ref|YP_004003904.1| - 1.3e-05 25.2 102.7 0.0053 16.8 15.2 6.5 2 2 4 6 6 6 4 Laminin Domain II AAA_23 PF13476.6 gi|312136567|ref|YP_004003904.1| - 0.00066 20.2 209.3 1.8e+04 -6.3 26.6 8.9 1 1 2 3 3 0 0 AAA domain BLOC1_2 PF10046.9 gi|312136567|ref|YP_004003904.1| - 0.002 18.4 11.6 0.002 18.4 11.6 10.8 4 2 7 12 12 11 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|312136567|ref|YP_004003904.1| - 0.003 17.6 23.7 1.5 8.9 0.7 6.0 2 2 3 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.12 gi|312136567|ref|YP_004003904.1| - 0.0031 17.7 9.0 3.8 7.8 0.0 7.1 6 2 1 7 7 7 1 Proteins of 100 residues with WXG Spc7 PF08317.11 gi|312136567|ref|YP_004003904.1| - 0.0034 16.3 153.6 0.0082 15.1 38.2 6.6 2 2 4 6 6 6 5 Spc7 kinetochore protein Filament PF00038.21 gi|312136567|ref|YP_004003904.1| - 0.005 16.5 31.8 0.005 16.5 31.8 5.2 1 1 2 4 4 3 1 Intermediate filament protein DivIC PF04977.15 gi|312136567|ref|YP_004003904.1| - 0.0092 15.7 10.4 0.0092 15.7 10.4 11.7 2 2 10 12 12 10 2 Septum formation initiator DUF1664 PF07889.12 gi|312136567|ref|YP_004003904.1| - 0.022 14.8 92.4 0.071 13.1 10.7 8.2 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) DUF3885 PF13021.6 gi|312136567|ref|YP_004003904.1| - 0.18 11.9 0.3 1.1 9.5 0.3 2.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3885) GAS PF13851.6 gi|312136567|ref|YP_004003904.1| - 0.25 10.7 165.2 0.14 11.5 31.7 6.6 1 1 5 6 6 6 0 Growth-arrest specific micro-tubule binding PilJ PF13675.6 gi|312136567|ref|YP_004003904.1| - 0.27 11.3 7.1 3.4 7.7 0.1 4.5 3 2 0 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Sec34 PF04136.15 gi|312136567|ref|YP_004003904.1| - 0.27 11.1 79.0 0.31 10.9 8.5 6.7 4 2 1 6 6 6 0 Sec34-like family MukB PF04310.12 gi|312136567|ref|YP_004003904.1| - 0.27 11.0 0.0 0.27 11.0 0.0 5.5 3 2 5 8 8 8 0 MukB N-terminal Fez1 PF06818.15 gi|312136567|ref|YP_004003904.1| - 1 9.7 129.3 0.56 10.6 38.8 5.7 1 1 5 6 6 6 0 Fez1 AAA_13 PF13166.6 gi|312136567|ref|YP_004003904.1| - 1.3 7.5 133.7 1.2 7.7 42.3 5.1 1 1 3 5 5 5 0 AAA domain ATG16 PF08614.11 gi|312136567|ref|YP_004003904.1| - 2.1 8.6 113.9 4.7 7.4 8.6 6.5 1 1 5 6 6 6 0 Autophagy protein 16 (ATG16) AAA_22 PF13401.6 gi|312136567|ref|YP_004003904.1| - 2.1 8.6 5.5 8.6 6.6 0.0 3.8 4 0 0 4 4 3 0 AAA domain NPV_P10 PF05531.12 gi|312136567|ref|YP_004003904.1| - 4.5 7.8 43.6 3.6 8.1 3.1 7.9 3 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein TMPIT PF07851.13 gi|312136567|ref|YP_004003904.1| - 8 5.6 121.3 0.26 10.5 16.5 6.2 2 2 4 6 6 6 0 TMPIT-like protein Mur_ligase_M PF08245.12 gi|312136568|ref|YP_004003905.1| - 2e-23 83.4 5.9 7.7e-22 78.2 0.3 3.3 2 2 2 4 4 4 2 Mur ligase middle domain 2-Hacid_dh_C PF02826.19 gi|312136568|ref|YP_004003905.1| - 0.002 17.5 0.0 0.007 15.8 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|312136568|ref|YP_004003905.1| - 0.0037 16.6 0.0 0.0073 15.6 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|312136568|ref|YP_004003905.1| - 0.0091 16.6 0.2 0.31 11.6 0.0 3.2 3 1 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent CbiA PF01656.23 gi|312136568|ref|YP_004003905.1| - 0.027 14.5 1.4 0.16 12.1 0.5 2.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NAD_binding_2 PF03446.15 gi|312136568|ref|YP_004003905.1| - 0.028 14.6 0.1 0.095 12.9 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF5371 PF17341.2 gi|312136568|ref|YP_004003905.1| - 0.041 14.1 2.0 0.06 13.6 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5371) Radical_SAM PF04055.21 gi|312136569|ref|YP_004003906.1| - 1.1e-12 48.7 0.0 2.4e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136569|ref|YP_004003906.1| - 2.7e-08 34.2 1.4 7.9e-08 32.7 1.4 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_S14 PF00253.21 gi|312136569|ref|YP_004003906.1| - 0.17 11.7 0.1 0.17 11.7 0.1 1.9 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e RLAN PF14401.6 gi|312136569|ref|YP_004003906.1| - 0.18 11.5 0.0 1.2 8.8 0.0 2.0 2 0 0 2 2 2 0 RimK-like ATPgrasp N-terminal domain PLAC8 PF04749.17 gi|312136569|ref|YP_004003906.1| - 0.72 10.9 8.4 2.2 9.3 3.8 3.0 2 1 0 2 2 2 0 PLAC8 family tRNA-synt_2d PF01409.20 gi|312136570|ref|YP_004003907.1| - 9.3e-53 179.2 0.0 4e-50 170.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|312136570|ref|YP_004003907.1| - 1.2e-10 41.3 2.4 1.2e-10 41.3 2.4 2.3 3 0 0 3 3 3 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|312136570|ref|YP_004003907.1| - 3.8e-06 26.5 0.0 4.2e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|312136570|ref|YP_004003907.1| - 0.0013 18.8 0.3 0.0052 16.8 0.3 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|312136570|ref|YP_004003907.1| - 0.0017 17.5 0.1 0.28 10.2 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) CTP-dep_RFKase PF01982.16 gi|312136571|ref|YP_004003908.1| - 5.2e-38 129.9 0.2 5.9e-38 129.7 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|312136571|ref|YP_004003908.1| - 0.054 13.4 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DHBP_synthase PF00926.19 gi|312136572|ref|YP_004003909.1| - 1.2e-64 217.4 0.2 1.5e-64 217.1 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase TbpB_C PF17483.2 gi|312136572|ref|YP_004003909.1| - 0.11 12.8 0.3 0.59 10.5 0.3 2.1 1 1 0 1 1 1 0 C-lobe handle domain of Tf-binding protein B GATase_3 PF07685.14 gi|312136573|ref|YP_004003910.1| - 1.1e-16 61.0 0.2 2.4e-16 59.9 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|312136573|ref|YP_004003910.1| - 6e-13 49.1 7.5 6.4e-08 32.7 1.9 2.5 1 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|312136573|ref|YP_004003910.1| - 1.1e-10 41.6 0.0 5.1e-10 39.5 0.0 2.1 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_5 PF13507.6 gi|312136573|ref|YP_004003910.1| - 6.5e-05 22.1 0.0 0.0007 18.8 0.0 2.3 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|312136573|ref|YP_004003910.1| - 0.00026 20.8 0.1 0.001 18.9 0.0 2.0 2 0 0 2 2 2 1 DJ-1/PfpI family KdpD PF02702.17 gi|312136573|ref|YP_004003910.1| - 0.002 17.7 0.1 0.0036 16.8 0.1 1.5 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain MobB PF03205.14 gi|312136573|ref|YP_004003910.1| - 0.0021 18.0 0.4 0.62 10.0 0.1 2.8 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.28 gi|312136573|ref|YP_004003910.1| - 0.0021 17.9 0.1 0.0039 17.0 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I HMD PF03201.16 gi|312136574|ref|YP_004003911.1| - 9.3e-36 121.9 0.6 1.9e-35 121.0 0.6 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|312136574|ref|YP_004003911.1| - 1.6e-07 31.6 0.1 1.2e-06 28.8 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|312136574|ref|YP_004003911.1| - 0.00026 20.6 0.2 0.00059 19.4 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|312136574|ref|YP_004003911.1| - 0.0065 17.0 0.1 0.0065 17.0 0.1 2.4 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|312136574|ref|YP_004003911.1| - 0.092 12.9 0.4 0.3 11.2 0.1 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus nsp9 PF08710.10 gi|312136575|ref|YP_004003912.1| - 0.054 13.9 0.0 0.065 13.6 0.0 1.4 1 0 0 1 1 1 0 nsp9 replicase TPR_8 PF13181.6 gi|312136575|ref|YP_004003912.1| - 0.11 12.7 1.2 0.33 11.3 0.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4519 PF15012.6 gi|312136576|ref|YP_004003913.1| - 0.049 13.8 0.5 0.054 13.7 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) Peptidase_M24 PF00557.24 gi|312136578|ref|YP_004003915.1| - 1.7e-59 201.0 0.1 2.4e-59 200.5 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|312136578|ref|YP_004003915.1| - 1.2e-09 39.0 0.0 2.1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Phage_CII PF05269.11 gi|312136578|ref|YP_004003915.1| - 0.22 11.7 1.5 10 6.4 0.0 2.8 3 0 0 3 3 3 0 Bacteriophage CII protein Class_IIIsignal PF04021.12 gi|312136579|ref|YP_004003916.1| - 0.00048 20.0 4.7 0.00095 19.1 4.7 1.5 1 0 0 1 1 1 1 Class III signal peptide DUF2310 PF10071.9 gi|312136579|ref|YP_004003916.1| - 0.16 11.3 0.1 0.18 11.0 0.1 1.0 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) PGA_cap PF09587.10 gi|312136580|ref|YP_004003917.1| - 5.3e-72 242.4 0.2 6.4e-72 242.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Amidase PF01425.21 gi|312136581|ref|YP_004003918.1| - 3e-133 445.1 0.0 3.4e-133 444.9 0.0 1.0 1 0 0 1 1 1 1 Amidase DUF777 PF05606.11 gi|312136581|ref|YP_004003918.1| - 0.017 14.8 0.5 0.038 13.7 0.5 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF777) Acylphosphatase PF00708.18 gi|312136581|ref|YP_004003918.1| - 0.45 11.0 3.7 2.3 8.7 0.1 3.0 3 0 0 3 3 3 0 Acylphosphatase Methyltransf_11 PF08241.12 gi|312136582|ref|YP_004003919.1| - 3.5e-24 85.3 0.0 4.8e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312136582|ref|YP_004003919.1| - 1.5e-23 83.3 0.0 2.3e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|312136582|ref|YP_004003919.1| - 2.2e-15 56.7 0.0 2.6e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|312136582|ref|YP_004003919.1| - 3.8e-13 50.0 0.0 1.5e-12 48.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312136582|ref|YP_004003919.1| - 1.2e-11 44.4 0.0 1.7e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|312136582|ref|YP_004003919.1| - 7e-10 39.0 0.0 9.3e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|312136582|ref|YP_004003919.1| - 5.1e-08 32.6 0.0 6.9e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|312136582|ref|YP_004003919.1| - 9.4e-08 32.1 0.1 1.4e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|312136582|ref|YP_004003919.1| - 1.9e-06 27.5 0.0 3.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|312136582|ref|YP_004003919.1| - 3.5e-06 26.5 0.0 3.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase ADH_zinc_N PF00107.26 gi|312136582|ref|YP_004003919.1| - 5.3e-06 26.4 0.1 3.3e-05 23.9 0.1 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Met_10 PF02475.16 gi|312136582|ref|YP_004003919.1| - 9.5e-06 25.5 0.1 1.1e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein CheR PF01739.18 gi|312136582|ref|YP_004003919.1| - 2.4e-05 23.9 0.1 0.021 14.3 0.0 2.2 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_8 PF05148.15 gi|312136582|ref|YP_004003919.1| - 4.9e-05 23.3 0.0 0.00057 19.8 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|312136582|ref|YP_004003919.1| - 8.5e-05 21.3 0.0 9.2e-05 21.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase GidB PF02527.15 gi|312136582|ref|YP_004003919.1| - 9.8e-05 21.8 0.1 0.00011 21.6 0.1 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.17 gi|312136582|ref|YP_004003919.1| - 0.00024 20.6 0.2 0.00053 19.5 0.1 1.7 1 1 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|312136582|ref|YP_004003919.1| - 0.00031 20.6 0.0 0.00049 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|312136582|ref|YP_004003919.1| - 0.00033 20.5 1.2 0.049 13.3 0.1 2.4 2 1 0 2 2 2 1 DNA methylase Methyltransf_32 PF13679.6 gi|312136582|ref|YP_004003919.1| - 0.00037 20.5 0.0 0.00051 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|312136582|ref|YP_004003919.1| - 0.00044 19.4 0.0 0.00049 19.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TrmK PF04816.12 gi|312136582|ref|YP_004003919.1| - 0.00078 19.0 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Spermine_synth PF01564.17 gi|312136582|ref|YP_004003919.1| - 0.0035 16.8 0.9 0.21 11.0 0.3 2.2 2 0 0 2 2 2 1 Spermine/spermidine synthase domain Methyltransf_3 PF01596.17 gi|312136582|ref|YP_004003919.1| - 0.0042 16.3 0.2 0.0074 15.5 0.2 1.3 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.18 gi|312136582|ref|YP_004003919.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|312136582|ref|YP_004003919.1| - 0.027 14.1 0.0 0.034 13.7 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|312136582|ref|YP_004003919.1| - 0.029 14.1 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase GCD14 PF08704.10 gi|312136582|ref|YP_004003919.1| - 0.031 13.9 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Cons_hypoth95 PF03602.15 gi|312136582|ref|YP_004003919.1| - 0.036 13.7 0.0 0.043 13.4 0.0 1.3 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_5 PF01795.19 gi|312136582|ref|YP_004003919.1| - 0.073 12.6 0.1 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 MraW methylase family PsbL PF02419.17 gi|312136583|ref|YP_004003920.1| - 6.6 6.8 11.7 1.8 8.6 3.6 3.1 3 0 0 3 3 3 0 PsbL protein V4R PF02830.18 gi|312136584|ref|YP_004003921.1| - 2e-19 69.3 0.0 3.4e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 V4R domain ATC_hydrolase PF14196.6 gi|312136584|ref|YP_004003921.1| - 0.13 13.0 0.6 0.48 11.2 0.0 2.1 2 1 0 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase DUF5530 PF17670.1 gi|312136585|ref|YP_004003922.1| - 0.08 12.7 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5530) AIRS_C PF02769.22 gi|312136586|ref|YP_004003923.1| - 2e-14 54.0 1.1 3.2e-14 53.3 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|312136586|ref|YP_004003923.1| - 3.6e-09 37.1 0.7 1.5e-08 35.2 0.6 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain GATase PF00117.28 gi|312136587|ref|YP_004003924.1| - 3.9e-27 95.3 0.0 4.7e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|312136587|ref|YP_004003924.1| - 4.9e-10 39.6 0.0 6.9e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|312136587|ref|YP_004003924.1| - 1.7e-07 31.0 0.0 2e-07 30.8 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|312136587|ref|YP_004003924.1| - 6.7e-05 22.7 0.7 0.014 15.1 0.2 2.4 2 1 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|312136587|ref|YP_004003924.1| - 0.00012 22.0 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family NTP_transferase PF00483.23 gi|312136588|ref|YP_004003925.1| - 2.3e-32 112.5 0.0 8.3e-32 110.7 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.18 gi|312136588|ref|YP_004003925.1| - 1.6e-09 37.8 0.2 2.9e-09 37.0 0.2 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 gi|312136588|ref|YP_004003925.1| - 5e-09 35.7 0.3 1.1e-08 34.7 0.0 1.6 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|312136588|ref|YP_004003925.1| - 8.7e-09 35.9 0.0 1.2e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ectoine_synth PF06339.12 gi|312136588|ref|YP_004003925.1| - 0.00062 20.0 0.4 0.00099 19.3 0.4 1.3 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.19 gi|312136588|ref|YP_004003925.1| - 0.00088 19.2 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|312136588|ref|YP_004003925.1| - 0.0059 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Cupin CspB_prodomain PF18425.1 gi|312136588|ref|YP_004003925.1| - 0.032 14.2 0.7 3.4 7.7 0.0 3.0 3 1 0 3 3 3 0 Csp protease B prodomain Hydrolase PF00702.26 gi|312136588|ref|YP_004003925.1| - 0.13 12.5 0.0 5.2 7.3 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Oxidored_nitro PF00148.19 gi|312136589|ref|YP_004003926.1| - 1.8e-23 83.0 0.1 2.8e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SOR_SNZ PF01680.17 gi|312136590|ref|YP_004003927.1| - 2.2e-109 364.0 9.5 2.9e-109 363.6 9.5 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|312136590|ref|YP_004003927.1| - 2e-08 33.9 9.3 1.4e-06 27.8 0.4 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|312136590|ref|YP_004003927.1| - 4.7e-05 22.9 1.5 0.00076 19.0 0.0 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.17 gi|312136590|ref|YP_004003927.1| - 0.00017 20.8 0.2 0.081 12.0 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|312136590|ref|YP_004003927.1| - 0.00037 19.7 1.6 0.0053 16.0 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|312136590|ref|YP_004003927.1| - 0.0046 16.5 0.2 0.04 13.4 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|312136590|ref|YP_004003927.1| - 0.006 15.8 0.1 0.093 11.9 0.0 2.2 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|312136590|ref|YP_004003927.1| - 0.03 14.4 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TMP-TENI PF02581.17 gi|312136590|ref|YP_004003927.1| - 0.042 13.2 1.0 0.42 9.9 0.1 2.4 2 1 0 2 2 2 0 Thiamine monophosphate synthase DUF515 PF04415.12 gi|312136591|ref|YP_004003928.1| - 1.1e-24 86.6 0.0 4.9e-14 51.6 0.0 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF515) RcpC PF16976.5 gi|312136591|ref|YP_004003928.1| - 0.00066 19.7 0.0 0.0018 18.3 0.0 1.8 1 0 0 1 1 1 1 Flp pilus assembly protein RcpC/CpaB Peptidase_S8 PF00082.22 gi|312136591|ref|YP_004003928.1| - 0.06 12.6 0.4 0.092 12.0 0.4 1.3 1 0 0 1 1 1 0 Subtilase family YukC PF10140.9 gi|312136591|ref|YP_004003928.1| - 0.12 11.2 0.2 0.2 10.4 0.2 1.2 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC Class_IIIsignal PF04021.12 gi|312136592|ref|YP_004003929.1| - 3.4e-08 33.2 3.3 4.4e-08 32.9 3.3 1.1 1 0 0 1 1 1 1 Class III signal peptide Flp1_like PF16982.5 gi|312136592|ref|YP_004003929.1| - 0.00012 21.3 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 Putative Flagellin, Flp1-like, domain Flp_Fap PF04964.14 gi|312136592|ref|YP_004003929.1| - 0.018 14.9 0.9 0.03 14.2 0.9 1.4 1 1 0 1 1 1 0 Flp/Fap pilin component Class_IIIsignal PF04021.12 gi|312136593|ref|YP_004003930.1| - 3.3e-08 33.3 4.9 4.5e-08 32.8 4.9 1.2 1 0 0 1 1 1 1 Class III signal peptide Flp1_like PF16982.5 gi|312136593|ref|YP_004003930.1| - 0.0013 18.1 0.1 0.0019 17.6 0.1 1.3 1 0 0 1 1 1 1 Putative Flagellin, Flp1-like, domain Flp_Fap PF04964.14 gi|312136593|ref|YP_004003930.1| - 0.0028 17.4 0.5 0.0042 16.9 0.5 1.3 1 0 0 1 1 1 1 Flp/Fap pilin component PsbJ PF01788.17 gi|312136593|ref|YP_004003930.1| - 0.055 13.4 1.1 0.082 12.8 1.1 1.2 1 0 0 1 1 1 0 PsbJ DUF4346 PF14251.6 gi|312136594|ref|YP_004003931.1| - 4.6e-12 46.0 0.1 9.9e-12 44.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|312136594|ref|YP_004003931.1| - 3.1e-10 40.2 0.0 6e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Polysacc_deac_1 PF01522.21 gi|312136594|ref|YP_004003931.1| - 0.024 14.5 0.0 6.3 6.7 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide deacetylase DUF561 PF04481.12 gi|312136594|ref|YP_004003931.1| - 0.074 12.2 0.1 0.68 9.1 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) ATP_bind_3 PF01171.20 gi|312136595|ref|YP_004003932.1| - 1.2e-16 61.0 0.0 1.9e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 PP-loop family zn-ribbon_14 PF16503.5 gi|312136595|ref|YP_004003932.1| - 0.00057 19.3 5.3 0.00057 19.3 5.3 3.7 3 1 0 3 3 3 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|312136595|ref|YP_004003932.1| - 0.013 14.3 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.19 gi|312136595|ref|YP_004003932.1| - 0.025 14.6 0.0 0.064 13.3 0.0 1.9 2 1 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family CTU2 PF10288.9 gi|312136595|ref|YP_004003932.1| - 0.076 13.3 2.4 0.088 13.0 0.5 2.1 2 1 0 2 2 2 0 Cytoplasmic tRNA 2-thiolation protein 2 EPSP_synthase PF00275.20 gi|312136596|ref|YP_004003933.1| - 1.9e-121 405.7 0.1 2.2e-121 405.5 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tRNA-synt_1 PF00133.22 gi|312136597|ref|YP_004003934.1| - 6.9e-156 520.0 5.0 9.2e-155 516.3 5.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|312136597|ref|YP_004003934.1| - 4.5e-41 140.3 0.7 9.3e-41 139.3 0.7 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|312136597|ref|YP_004003934.1| - 1.8e-30 106.0 0.3 2.2e-14 53.0 0.0 3.6 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|312136597|ref|YP_004003934.1| - 9.8e-07 28.4 0.0 0.0094 15.3 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|312136597|ref|YP_004003934.1| - 2.9e-05 23.7 0.0 0.00011 21.8 0.0 1.9 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|312136597|ref|YP_004003934.1| - 5.1e-05 22.4 0.2 0.00078 18.5 0.1 2.8 3 1 0 3 3 3 1 tRNA synthetases class I (K) HTH_39 PF14090.6 gi|312136597|ref|YP_004003934.1| - 0.031 14.0 0.1 1.1 9.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain tRNA_synthFbeta PF17759.1 gi|312136599|ref|YP_004003936.1| - 2e-43 148.4 0.1 2.7e-43 147.9 0.1 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|312136599|ref|YP_004003936.1| - 1.7e-21 76.3 5.4 1.2e-14 54.3 0.9 3.9 4 0 0 4 4 4 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|312136599|ref|YP_004003936.1| - 6.6e-13 48.7 0.1 1.1e-12 48.0 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|312136599|ref|YP_004003936.1| - 2e-06 27.9 2.5 0.0019 18.4 0.0 3.6 3 1 0 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|312136599|ref|YP_004003936.1| - 2.6e-05 23.8 0.2 5.8e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Baculo_E66 PF04850.12 gi|312136599|ref|YP_004003936.1| - 0.015 14.1 0.1 0.036 12.9 0.1 1.7 1 0 0 1 1 1 0 Baculovirus E66 occlusion-derived virus envelope protein UPF0047 PF01894.17 gi|312136600|ref|YP_004003937.1| - 1.6e-37 128.2 0.0 1.9e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 GP3_package PF16677.5 gi|312136600|ref|YP_004003937.1| - 0.064 13.4 0.1 0.11 12.6 0.1 1.4 1 1 0 1 1 1 0 DNA-packaging protein gp3 LSM PF01423.22 gi|312136602|ref|YP_004003939.1| - 1e-24 86.0 0.2 1.3e-24 85.6 0.2 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|312136602|ref|YP_004003939.1| - 0.00065 19.8 0.0 0.0008 19.5 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|312136603|ref|YP_004003940.1| - 1.4e-25 89.2 11.0 1.5e-25 89.1 11.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|312136603|ref|YP_004003940.1| - 0.0075 16.3 1.2 0.009 16.0 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-piccolo PF05715.13 gi|312136603|ref|YP_004003940.1| - 0.02 15.0 1.4 0.039 14.1 1.4 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.19 gi|312136603|ref|YP_004003940.1| - 0.036 14.1 0.8 0.041 13.9 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ephrin_rec_like PF07699.13 gi|312136603|ref|YP_004003940.1| - 0.053 13.3 0.8 0.076 12.8 0.8 1.4 1 1 0 1 1 1 0 Putative ephrin-receptor like FYVE_2 PF02318.16 gi|312136603|ref|YP_004003940.1| - 0.12 12.6 4.1 0.13 12.4 4.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Rubredoxin_2 PF18073.1 gi|312136603|ref|YP_004003940.1| - 0.26 11.1 3.7 9 6.1 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Toprim PF01751.22 gi|312136604|ref|YP_004003941.1| - 6.9e-08 32.7 0.3 6.9e-08 32.7 0.3 3.0 2 1 0 2 2 1 1 Toprim domain TMF_TATA_bd PF12325.8 gi|312136604|ref|YP_004003941.1| - 2e-05 24.8 10.7 4.2e-05 23.7 10.7 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 gi|312136604|ref|YP_004003941.1| - 2.6e-05 24.8 12.3 4e-05 24.2 12.3 1.3 1 0 0 1 1 1 1 Apg6 coiled-coil region FH2 PF02181.23 gi|312136604|ref|YP_004003941.1| - 3.5e-05 23.1 4.4 4.7e-05 22.7 4.4 1.2 1 0 0 1 1 1 1 Formin Homology 2 Domain Spc7 PF08317.11 gi|312136604|ref|YP_004003941.1| - 4.4e-05 22.5 8.1 6.2e-05 22.0 8.1 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Mod_r PF07200.13 gi|312136604|ref|YP_004003941.1| - 8.5e-05 22.7 9.5 0.00014 22.0 9.5 1.4 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein V_ATPase_I PF01496.19 gi|312136604|ref|YP_004003941.1| - 0.00012 20.1 4.8 0.00016 19.8 4.8 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family GAS PF13851.6 gi|312136604|ref|YP_004003941.1| - 0.00013 21.4 16.0 0.00015 21.2 15.1 1.6 2 0 0 2 2 1 1 Growth-arrest specific micro-tubule binding PspA_IM30 PF04012.12 gi|312136604|ref|YP_004003941.1| - 0.00014 21.5 5.6 0.00027 20.6 5.6 1.4 1 0 0 1 1 1 1 PspA/IM30 family DUF4472 PF14739.6 gi|312136604|ref|YP_004003941.1| - 0.00016 22.4 13.6 0.0003 21.5 13.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4472) Tropomyosin PF00261.20 gi|312136604|ref|YP_004003941.1| - 0.00016 21.1 11.6 0.00026 20.4 11.6 1.3 1 0 0 1 1 1 1 Tropomyosin ADIP PF11559.8 gi|312136604|ref|YP_004003941.1| - 0.00028 21.0 10.0 0.00043 20.4 10.0 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding EzrA PF06160.12 gi|312136604|ref|YP_004003941.1| - 0.00073 17.8 19.5 0.00095 17.5 18.1 1.7 1 1 0 2 2 2 1 Septation ring formation regulator, EzrA Toprim_2 PF13155.6 gi|312136604|ref|YP_004003941.1| - 0.00077 19.8 0.0 0.0024 18.2 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Fmp27_WPPW PF10359.9 gi|312136604|ref|YP_004003941.1| - 0.001 18.0 6.9 0.0014 17.6 6.9 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain HOOK PF05622.12 gi|312136604|ref|YP_004003941.1| - 0.0012 17.1 9.7 0.0016 16.7 9.7 1.3 1 0 0 1 1 1 1 HOOK protein FPP PF05911.11 gi|312136604|ref|YP_004003941.1| - 0.0015 16.8 9.7 0.0018 16.6 9.7 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Lebercilin PF15619.6 gi|312136604|ref|YP_004003941.1| - 0.0016 18.1 13.2 0.0027 17.4 13.2 1.3 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Baculo_PEP_C PF04513.12 gi|312136604|ref|YP_004003941.1| - 0.002 18.2 0.1 0.0045 17.0 0.1 1.6 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|312136604|ref|YP_004003941.1| - 0.0024 17.9 6.1 0.0056 16.7 5.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|312136604|ref|YP_004003941.1| - 0.0026 15.4 5.1 0.0029 15.2 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Jnk-SapK_ap_N PF09744.9 gi|312136604|ref|YP_004003941.1| - 0.0028 17.9 11.4 0.0028 17.9 11.4 1.7 2 0 0 2 2 1 1 JNK_SAPK-associated protein-1 FapA PF03961.13 gi|312136604|ref|YP_004003941.1| - 0.0029 16.3 16.6 0.0029 16.3 16.6 1.5 1 1 0 1 1 1 1 Flagellar Assembly Protein A Sec34 PF04136.15 gi|312136604|ref|YP_004003941.1| - 0.0033 17.3 8.8 0.024 14.5 8.9 2.1 1 1 0 1 1 1 1 Sec34-like family SHE3 PF17078.5 gi|312136604|ref|YP_004003941.1| - 0.0036 17.1 12.7 0.0062 16.3 12.7 1.5 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 COG6 PF06419.11 gi|312136604|ref|YP_004003941.1| - 0.0046 15.2 5.6 0.0073 14.6 5.6 1.3 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 DUF724 PF05266.14 gi|312136604|ref|YP_004003941.1| - 0.0048 16.7 8.4 0.0077 16.1 8.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF724) TMPIT PF07851.13 gi|312136604|ref|YP_004003941.1| - 0.0049 16.2 9.4 0.0071 15.6 9.4 1.2 1 0 0 1 1 1 1 TMPIT-like protein CALCOCO1 PF07888.11 gi|312136604|ref|YP_004003941.1| - 0.0049 15.8 7.6 0.0061 15.5 7.6 1.3 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like UPF0242 PF06785.11 gi|312136604|ref|YP_004003941.1| - 0.0057 16.8 10.9 0.0074 16.4 10.9 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|312136604|ref|YP_004003941.1| - 0.0065 16.9 8.8 0.0095 16.4 8.8 1.3 1 0 0 1 1 1 1 Fez1 ZapB PF06005.12 gi|312136604|ref|YP_004003941.1| - 0.007 16.8 20.3 0.54 10.7 6.0 2.5 1 1 1 2 2 2 2 Cell division protein ZapB HemX PF04375.14 gi|312136604|ref|YP_004003941.1| - 0.0081 15.5 1.9 0.0081 15.5 1.9 1.4 2 0 0 2 2 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase CREPT PF16566.5 gi|312136604|ref|YP_004003941.1| - 0.0084 16.3 7.8 0.017 15.3 7.8 1.4 1 0 0 1 1 1 1 Cell-cycle alteration and expression-elevated protein in tumour WXG100 PF06013.12 gi|312136604|ref|YP_004003941.1| - 0.0085 16.3 0.8 0.039 14.2 0.8 2.0 1 1 0 1 1 1 1 Proteins of 100 residues with WXG Muted PF14942.6 gi|312136604|ref|YP_004003941.1| - 0.0093 16.3 13.5 0.018 15.4 13.5 1.5 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein Snapin_Pallidin PF14712.6 gi|312136604|ref|YP_004003941.1| - 0.013 16.0 8.7 0.03 14.7 8.7 1.6 1 0 0 1 1 1 0 Snapin/Pallidin T3SSipB PF16535.5 gi|312136604|ref|YP_004003941.1| - 0.013 16.0 1.8 0.025 15.1 1.8 1.4 1 0 0 1 1 1 0 Type III cell invasion protein SipB YabA PF06156.13 gi|312136604|ref|YP_004003941.1| - 0.013 16.1 13.0 0.021 15.4 10.3 2.3 1 1 1 2 2 2 0 Initiation control protein YabA ERM PF00769.19 gi|312136604|ref|YP_004003941.1| - 0.013 15.3 10.7 0.019 14.8 10.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family AAA_13 PF13166.6 gi|312136604|ref|YP_004003941.1| - 0.013 14.2 10.0 0.017 13.8 10.0 1.2 1 0 0 1 1 1 0 AAA domain DUF4988 PF16378.5 gi|312136604|ref|YP_004003941.1| - 0.014 15.1 2.9 1.6 8.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function STAT_alpha PF01017.20 gi|312136604|ref|YP_004003941.1| - 0.015 15.2 6.9 0.026 14.4 6.9 1.4 1 0 0 1 1 1 0 STAT protein, all-alpha domain GrpE PF01025.19 gi|312136604|ref|YP_004003941.1| - 0.015 14.9 14.6 0.015 14.9 14.6 2.4 1 1 1 2 2 2 0 GrpE Toprim_4 PF13662.6 gi|312136604|ref|YP_004003941.1| - 0.016 15.6 1.0 0.046 14.2 0.3 2.2 2 0 0 2 2 1 0 Toprim domain DivIC PF04977.15 gi|312136604|ref|YP_004003941.1| - 0.019 14.8 17.5 0.063 13.0 5.4 2.5 1 1 1 2 2 2 0 Septum formation initiator DUF3450 PF11932.8 gi|312136604|ref|YP_004003941.1| - 0.019 14.3 7.4 0.033 13.5 7.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF5082 PF16888.5 gi|312136604|ref|YP_004003941.1| - 0.02 15.1 12.0 0.047 14.0 12.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) OmpH PF03938.14 gi|312136604|ref|YP_004003941.1| - 0.021 15.1 10.2 0.047 14.0 10.2 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Fzo_mitofusin PF04799.13 gi|312136604|ref|YP_004003941.1| - 0.021 14.3 4.3 0.021 14.3 4.3 2.2 2 1 1 3 3 2 0 fzo-like conserved region Atg14 PF10186.9 gi|312136604|ref|YP_004003941.1| - 0.023 13.8 10.0 0.032 13.3 10.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|312136604|ref|YP_004003941.1| - 0.023 14.8 22.1 0.17 12.0 9.8 2.6 1 1 1 2 2 2 0 bZIP transcription factor IFT57 PF10498.9 gi|312136604|ref|YP_004003941.1| - 0.025 13.6 16.5 0.048 12.6 16.5 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 ATG16 PF08614.11 gi|312136604|ref|YP_004003941.1| - 0.027 14.7 13.0 0.042 14.1 13.0 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) TACC_C PF05010.14 gi|312136604|ref|YP_004003941.1| - 0.028 14.2 16.1 0.047 13.5 15.5 1.6 2 0 0 2 2 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TolA_bind_tri PF16331.5 gi|312136604|ref|YP_004003941.1| - 0.03 14.4 2.5 0.062 13.4 2.5 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation PilJ PF13675.6 gi|312136604|ref|YP_004003941.1| - 0.034 14.2 0.3 0.16 12.0 0.3 2.0 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term BLOC1_2 PF10046.9 gi|312136604|ref|YP_004003941.1| - 0.034 14.5 15.0 0.8 10.1 5.7 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RmuC PF02646.16 gi|312136604|ref|YP_004003941.1| - 0.038 13.1 9.1 0.064 12.4 6.7 2.2 2 1 0 2 2 2 0 RmuC family FliD_C PF07195.12 gi|312136604|ref|YP_004003941.1| - 0.04 13.3 7.4 0.085 12.3 7.0 1.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus CENP-F_leu_zip PF10473.9 gi|312136604|ref|YP_004003941.1| - 0.041 13.9 18.3 0.03 14.3 15.9 1.8 2 0 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Allexi_40kDa PF05549.11 gi|312136604|ref|YP_004003941.1| - 0.042 13.4 2.0 0.066 12.7 2.0 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF4407 PF14362.6 gi|312136604|ref|YP_004003941.1| - 0.045 13.1 0.5 0.063 12.6 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spectrin PF00435.21 gi|312136604|ref|YP_004003941.1| - 0.046 14.2 10.4 0.15 12.6 8.2 2.3 2 1 0 2 2 1 0 Spectrin repeat Prominin PF05478.11 gi|312136604|ref|YP_004003941.1| - 0.046 11.7 3.6 0.065 11.2 3.6 1.1 1 0 0 1 1 1 0 Prominin MPS2 PF17060.5 gi|312136604|ref|YP_004003941.1| - 0.048 12.9 10.2 0.07 12.4 10.2 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 Med9 PF07544.13 gi|312136604|ref|YP_004003941.1| - 0.053 13.6 10.1 0.79 9.9 2.7 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Baculo_F PF12259.8 gi|312136604|ref|YP_004003941.1| - 0.055 12.0 7.7 0.079 11.5 7.7 1.1 1 0 0 1 1 1 0 Baculovirus F protein DUF4164 PF13747.6 gi|312136604|ref|YP_004003941.1| - 0.057 13.7 4.2 0.14 12.4 4.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) TelA PF05816.11 gi|312136604|ref|YP_004003941.1| - 0.06 12.4 8.2 0.095 11.8 8.2 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) DUF3810 PF12725.7 gi|312136604|ref|YP_004003941.1| - 0.065 12.6 3.2 0.11 11.8 3.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Dor1 PF04124.12 gi|312136604|ref|YP_004003941.1| - 0.072 11.8 8.5 1.3 7.6 8.2 2.1 1 1 1 2 2 2 0 Dor1-like family Exonuc_VII_L PF02601.15 gi|312136604|ref|YP_004003941.1| - 0.074 12.6 6.2 0.083 12.4 6.0 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF745 PF05335.13 gi|312136604|ref|YP_004003941.1| - 0.082 12.6 3.4 0.16 11.7 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF1204 PF06721.11 gi|312136604|ref|YP_004003941.1| - 0.083 12.3 7.4 0.12 11.8 7.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1204) H-kinase_dim PF02895.14 gi|312136604|ref|YP_004003941.1| - 0.087 13.2 0.6 0.3 11.5 0.6 2.0 2 0 0 2 2 1 0 Signal transducing histidine kinase, homodimeric domain Laminin_II PF06009.12 gi|312136604|ref|YP_004003941.1| - 0.096 12.7 7.5 0.28 11.2 7.0 1.9 1 1 1 2 2 2 0 Laminin Domain II Phage_GPO PF05929.11 gi|312136604|ref|YP_004003941.1| - 0.097 12.3 2.4 0.15 11.7 2.4 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase CENP-H PF05837.12 gi|312136604|ref|YP_004003941.1| - 0.098 13.1 12.1 0.25 11.8 12.1 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) JIP_LZII PF16471.5 gi|312136604|ref|YP_004003941.1| - 0.11 12.7 12.9 0.048 13.8 7.4 2.6 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II Nup54 PF13874.6 gi|312136604|ref|YP_004003941.1| - 0.11 12.6 3.9 0.29 11.2 3.9 1.7 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 BST2 PF16716.5 gi|312136604|ref|YP_004003941.1| - 0.11 13.1 7.3 0.25 11.9 7.3 1.6 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 MapZ_EC1 PF18041.1 gi|312136604|ref|YP_004003941.1| - 0.12 12.6 13.4 4.6 7.5 0.6 2.9 1 1 1 2 2 2 0 MapZ extracellular domain 1 DUF4047 PF13256.6 gi|312136604|ref|YP_004003941.1| - 0.14 12.3 5.8 0.36 11.0 5.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) DHR10 PF18595.1 gi|312136604|ref|YP_004003941.1| - 0.16 12.1 13.0 0.36 10.9 13.0 1.5 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain NPV_P10 PF05531.12 gi|312136604|ref|YP_004003941.1| - 0.16 12.4 3.5 0.59 10.6 2.1 2.6 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Tho2 PF11262.8 gi|312136604|ref|YP_004003941.1| - 0.17 11.0 10.3 0.28 10.4 10.3 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Spc24 PF08286.11 gi|312136604|ref|YP_004003941.1| - 0.18 12.0 14.3 0.22 11.8 9.1 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4140 PF13600.6 gi|312136604|ref|YP_004003941.1| - 0.19 12.2 6.9 1.6 9.2 1.8 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF812 PF05667.11 gi|312136604|ref|YP_004003941.1| - 0.2 10.5 16.2 0.39 9.5 15.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Ax_dynein_light PF10211.9 gi|312136604|ref|YP_004003941.1| - 0.21 11.5 17.4 1.8 8.5 17.4 2.1 1 1 0 1 1 1 0 Axonemal dynein light chain DUF4795 PF16043.5 gi|312136604|ref|YP_004003941.1| - 0.21 11.2 13.1 0.54 9.8 13.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) SKA2 PF16740.5 gi|312136604|ref|YP_004003941.1| - 0.21 11.4 10.0 1.4 8.7 2.1 2.7 2 1 1 3 3 2 0 Spindle and kinetochore-associated protein 2 Syntaxin PF00804.25 gi|312136604|ref|YP_004003941.1| - 0.22 11.2 10.7 0.1 12.2 8.1 1.8 2 0 0 2 2 1 0 Syntaxin Prefoldin_2 PF01920.20 gi|312136604|ref|YP_004003941.1| - 0.23 11.4 22.9 1.5 8.8 12.8 2.7 1 1 1 2 2 2 0 Prefoldin subunit Folliculin PF11704.8 gi|312136604|ref|YP_004003941.1| - 0.25 11.2 1.8 0.41 10.5 1.8 1.3 1 0 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport TPR_MLP1_2 PF07926.12 gi|312136604|ref|YP_004003941.1| - 0.26 11.3 16.3 0.79 9.8 13.8 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein 5_nucleotid PF05761.14 gi|312136604|ref|YP_004003941.1| - 0.26 10.1 5.6 0.36 9.7 5.6 1.2 1 0 0 1 1 1 0 5' nucleotidase family Syntaxin-6_N PF09177.11 gi|312136604|ref|YP_004003941.1| - 0.29 11.7 8.7 2.7 8.6 8.7 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF1319 PF07028.11 gi|312136604|ref|YP_004003941.1| - 0.3 11.3 8.1 0.95 9.7 2.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) ABC_tran_CTD PF16326.5 gi|312136604|ref|YP_004003941.1| - 0.33 11.2 16.1 14 6.0 16.1 2.6 1 1 0 1 1 1 0 ABC transporter C-terminal domain CLZ PF16526.5 gi|312136604|ref|YP_004003941.1| - 0.33 11.3 10.6 7.3 7.0 10.7 2.7 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PRKCSH-like PF12999.7 gi|312136604|ref|YP_004003941.1| - 0.33 10.7 4.3 0.64 9.8 4.3 1.5 1 0 0 1 1 1 0 Glucosidase II beta subunit-like FlaC_arch PF05377.11 gi|312136604|ref|YP_004003941.1| - 0.34 11.3 20.8 0.97 9.9 5.7 3.3 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) DASH_Dam1 PF08653.10 gi|312136604|ref|YP_004003941.1| - 0.35 10.7 2.3 23 4.9 0.0 2.7 1 1 1 2 2 2 0 DASH complex subunit Dam1 Cep57_CLD_2 PF14197.6 gi|312136604|ref|YP_004003941.1| - 0.36 11.0 9.9 0.75 9.9 9.9 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 LMBR1 PF04791.16 gi|312136604|ref|YP_004003941.1| - 0.36 9.7 9.2 0.52 9.1 8.8 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein HSBP1 PF06825.12 gi|312136604|ref|YP_004003941.1| - 0.37 10.7 2.5 0.76 9.7 0.2 2.5 2 1 1 3 3 2 0 Heat shock factor binding protein 1 COG5 PF10392.9 gi|312136604|ref|YP_004003941.1| - 0.4 10.9 8.1 2.3 8.4 1.4 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 YkyA PF10368.9 gi|312136604|ref|YP_004003941.1| - 0.41 10.3 22.5 1.2 8.8 22.5 1.8 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein SlyX PF04102.12 gi|312136604|ref|YP_004003941.1| - 0.42 11.3 3.7 1.3 9.7 3.7 1.8 1 1 0 1 1 1 0 SlyX Phage_GP20 PF06810.11 gi|312136604|ref|YP_004003941.1| - 0.43 10.4 16.5 0.68 9.7 15.2 1.9 1 1 0 1 1 1 0 Phage minor structural protein GP20 DUF4201 PF13870.6 gi|312136604|ref|YP_004003941.1| - 0.46 10.2 18.3 0.95 9.2 17.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF948 PF06103.11 gi|312136604|ref|YP_004003941.1| - 0.48 10.7 2.1 2.4 8.5 1.1 2.5 2 1 0 2 2 1 0 Bacterial protein of unknown function (DUF948) UPF0449 PF15136.6 gi|312136604|ref|YP_004003941.1| - 0.5 10.9 10.7 0.24 11.9 6.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 TraF_2 PF13729.6 gi|312136604|ref|YP_004003941.1| - 0.54 9.6 1.9 1.3 8.3 1.9 1.7 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein YlqD PF11068.8 gi|312136604|ref|YP_004003941.1| - 0.55 10.6 10.4 1.8 8.9 10.4 1.9 1 1 0 1 1 1 0 YlqD protein KxDL PF10241.9 gi|312136604|ref|YP_004003941.1| - 0.56 10.5 9.4 0.23 11.7 2.3 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF5344 PF17279.2 gi|312136604|ref|YP_004003941.1| - 0.56 10.8 11.6 3.6 8.2 11.7 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5344) FlxA PF14282.6 gi|312136604|ref|YP_004003941.1| - 0.57 10.2 11.5 15 5.6 11.5 2.3 1 1 0 1 1 1 0 FlxA-like protein ISG65-75 PF11727.8 gi|312136604|ref|YP_004003941.1| - 0.57 9.4 9.3 0.94 8.7 9.3 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF501 PF04417.12 gi|312136604|ref|YP_004003941.1| - 0.59 9.9 2.7 1.1 9.1 2.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF501) Paralemmin PF03285.15 gi|312136604|ref|YP_004003941.1| - 0.62 9.6 9.9 1 8.9 9.9 1.2 1 0 0 1 1 1 0 Paralemmin ApoO PF09769.9 gi|312136604|ref|YP_004003941.1| - 0.63 10.0 3.4 4 7.4 3.4 2.1 1 1 0 1 1 1 0 Apolipoprotein O Occludin_ELL PF07303.13 gi|312136604|ref|YP_004003941.1| - 0.64 10.8 14.2 2.8 8.7 14.2 2.0 1 1 0 1 1 1 0 Occludin homology domain OEP PF02321.18 gi|312136604|ref|YP_004003941.1| - 0.71 9.7 4.6 1.3 8.8 4.6 1.4 1 0 0 1 1 1 0 Outer membrane efflux protein Nsp1_C PF05064.13 gi|312136604|ref|YP_004003941.1| - 0.75 9.6 10.5 1.2 8.9 7.6 2.3 1 1 1 2 2 2 0 Nsp1-like C-terminal region DUF2205 PF10224.9 gi|312136604|ref|YP_004003941.1| - 0.82 9.7 10.2 11 6.2 4.7 3.2 2 1 1 3 3 3 0 Short coiled-coil protein BRE1 PF08647.11 gi|312136604|ref|YP_004003941.1| - 0.83 9.8 17.7 2.8 8.1 16.8 2.2 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase FliD_N PF02465.18 gi|312136604|ref|YP_004003941.1| - 0.89 10.3 8.8 3.2 8.5 1.4 2.6 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus THOC7 PF05615.13 gi|312136604|ref|YP_004003941.1| - 0.91 9.8 12.3 1.2 9.4 10.9 1.9 1 1 1 2 2 2 0 Tho complex subunit 7 Med21 PF11221.8 gi|312136604|ref|YP_004003941.1| - 0.97 9.7 12.1 0.18 12.0 5.9 2.2 1 1 1 2 2 2 0 Subunit 21 of Mediator complex KASH_CCD PF14662.6 gi|312136604|ref|YP_004003941.1| - 0.99 9.2 18.5 2.6 7.8 18.6 1.6 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Osmo_CC PF08946.10 gi|312136604|ref|YP_004003941.1| - 0.99 9.7 13.3 2.4 8.5 0.3 3.3 1 1 1 2 2 2 0 Osmosensory transporter coiled coil DUF4200 PF13863.6 gi|312136604|ref|YP_004003941.1| - 1.1 9.7 21.6 0.51 10.7 19.3 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 gi|312136604|ref|YP_004003941.1| - 1.1 9.5 12.0 3.9 7.7 11.4 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Tektin PF03148.14 gi|312136604|ref|YP_004003941.1| - 1.1 8.0 14.9 1.6 7.4 5.3 2.1 1 1 1 2 2 2 0 Tektin family Myb_DNA-bind_3 PF12776.7 gi|312136604|ref|YP_004003941.1| - 1.1 10.3 6.4 4.4 8.4 5.9 2.1 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 gi|312136604|ref|YP_004003941.1| - 1.1 9.7 15.0 37 4.8 0.6 2.9 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain Csm1_N PF18504.1 gi|312136604|ref|YP_004003941.1| - 1.2 9.5 13.6 18 5.8 13.8 2.3 1 1 0 1 1 1 0 Csm1 N-terminal domain DUF4404 PF14357.6 gi|312136604|ref|YP_004003941.1| - 1.3 9.7 5.1 3.4 8.4 5.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) DUF2203 PF09969.9 gi|312136604|ref|YP_004003941.1| - 1.3 9.7 6.5 3.8 8.2 6.5 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DMPK_coil PF08826.10 gi|312136604|ref|YP_004003941.1| - 1.4 9.1 11.8 1.3 9.1 9.3 2.3 1 1 1 2 2 1 0 DMPK coiled coil domain like Prefoldin PF02996.17 gi|312136604|ref|YP_004003941.1| - 1.5 8.8 14.8 3.5 7.6 6.9 3.1 2 1 1 3 3 2 0 Prefoldin subunit DUF573 PF04504.14 gi|312136604|ref|YP_004003941.1| - 1.6 9.5 15.2 22 5.8 13.6 2.8 1 1 1 3 3 2 0 Protein of unknown function, DUF573 LPP PF04728.13 gi|312136604|ref|YP_004003941.1| - 1.7 9.1 7.1 13 6.3 2.9 3.0 2 1 1 3 3 2 0 Lipoprotein leucine-zipper Uso1_p115_C PF04871.13 gi|312136604|ref|YP_004003941.1| - 1.8 9.0 18.5 7.4 7.0 18.5 2.0 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region EMP24_GP25L PF01105.24 gi|312136604|ref|YP_004003941.1| - 1.8 8.4 12.2 2.5 8.0 3.5 2.5 2 1 1 3 3 2 0 emp24/gp25L/p24 family/GOLD Seryl_tRNA_N PF02403.22 gi|312136604|ref|YP_004003941.1| - 1.9 8.7 17.6 3 8.1 15.1 2.4 2 1 1 3 3 2 0 Seryl-tRNA synthetase N-terminal domain DUF4337 PF14235.6 gi|312136604|ref|YP_004003941.1| - 2.1 8.5 11.1 6.9 6.8 11.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) Sipho_Gp157 PF05565.11 gi|312136604|ref|YP_004003941.1| - 2.3 8.2 18.7 3 7.8 9.4 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 DUF16 PF01519.16 gi|312136604|ref|YP_004003941.1| - 2.4 8.7 12.2 34 5.0 12.2 2.5 1 1 0 1 1 1 0 Protein of unknown function DUF16 TSC22 PF01166.18 gi|312136604|ref|YP_004003941.1| - 2.4 8.5 14.6 0.34 11.3 4.8 2.9 2 1 1 3 3 2 0 TSC-22/dip/bun family Syntaxin_2 PF14523.6 gi|312136604|ref|YP_004003941.1| - 2.7 8.4 12.6 3.4 8.1 11.0 1.9 1 1 1 2 2 1 0 Syntaxin-like protein AAA_23 PF13476.6 gi|312136604|ref|YP_004003941.1| - 2.7 8.5 20.6 4.4 7.8 20.5 1.4 1 1 0 1 1 1 0 AAA domain Cep57_MT_bd PF06657.13 gi|312136604|ref|YP_004003941.1| - 3 8.4 11.7 1.4 9.5 6.1 2.8 2 1 1 3 3 2 0 Centrosome microtubule-binding domain of Cep57 DUF3552 PF12072.8 gi|312136604|ref|YP_004003941.1| - 3.1 7.1 17.7 8.8 5.7 17.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Swi5 PF07061.11 gi|312136604|ref|YP_004003941.1| - 3.3 7.9 16.0 3.7 7.7 11.5 2.6 1 1 1 2 2 2 0 Swi5 DUF465 PF04325.13 gi|312136604|ref|YP_004003941.1| - 3.5 7.8 14.2 6.5 6.9 2.6 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF465) DUF4446 PF14584.6 gi|312136604|ref|YP_004003941.1| - 3.6 7.6 12.6 5.4 7.0 4.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) XhlA PF10779.9 gi|312136604|ref|YP_004003941.1| - 3.6 7.8 21.3 0.22 11.8 10.1 3.0 2 1 1 3 3 2 0 Haemolysin XhlA FemAB PF02388.16 gi|312136604|ref|YP_004003941.1| - 4 6.2 12.3 7 5.4 12.3 1.3 1 0 0 1 1 1 0 FemAB family Tup_N PF08581.10 gi|312136604|ref|YP_004003941.1| - 5.1 7.5 17.7 35 4.8 17.8 2.4 1 1 0 1 1 1 0 Tup N-terminal HALZ PF02183.18 gi|312136604|ref|YP_004003941.1| - 5.5 7.3 22.6 30 4.9 9.1 3.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper SLATT_fungal PF18142.1 gi|312136604|ref|YP_004003941.1| - 5.6 7.0 4.9 24 5.0 3.3 2.4 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain Rho_Binding PF08912.11 gi|312136604|ref|YP_004003941.1| - 5.8 7.8 23.9 4 8.3 10.4 2.8 2 1 1 3 3 2 0 Rho Binding ACCA PF03255.14 gi|312136604|ref|YP_004003941.1| - 7.3 6.5 10.7 23 4.9 10.7 1.9 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SRR PF07709.11 gi|312136604|ref|YP_004003941.1| - 8.8 7.2 6.3 38 5.3 1.1 3.1 2 0 0 2 2 2 0 Seven Residue Repeat TMF_DNA_bd PF12329.8 gi|312136604|ref|YP_004003941.1| - 9.2 6.3 26.4 7.5 6.6 23.9 2.2 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding GATase_7 PF13537.6 gi|312136605|ref|YP_004003942.1| - 5.7e-24 84.4 0.0 9.3e-24 83.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|312136605|ref|YP_004003942.1| - 1.7e-22 80.1 0.0 2.8e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|312136605|ref|YP_004003942.1| - 8.8e-10 37.9 0.0 1.4e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|312136605|ref|YP_004003942.1| - 4.5e-09 36.0 0.0 9.7e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|312136605|ref|YP_004003942.1| - 0.00021 20.2 0.0 0.46 9.1 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferases class-II DUF3683 PF12447.8 gi|312136605|ref|YP_004003942.1| - 0.089 12.9 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3683) PRTase_2 PF15609.6 gi|312136605|ref|YP_004003942.1| - 0.11 12.0 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Peptidase_U32 PF01136.19 gi|312136606|ref|YP_004003943.1| - 2.3e-89 298.5 0.0 3.1e-89 298.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 Radical_SAM PF04055.21 gi|312136606|ref|YP_004003943.1| - 0.026 14.9 0.0 2.3 8.6 0.0 2.4 2 0 0 2 2 2 0 Radical SAM superfamily Peptidase_U32_C PF16325.5 gi|312136606|ref|YP_004003943.1| - 0.15 12.3 0.5 0.6 10.4 0.5 2.0 1 0 0 1 1 1 0 Peptidase family U32 C-terminal domain Kri1 PF05178.12 gi|312136606|ref|YP_004003943.1| - 0.88 10.2 4.8 7.4 7.2 0.1 2.7 2 0 0 2 2 2 0 KRI1-like family Fer4_NifH PF00142.18 gi|312136607|ref|YP_004003944.1| - 1.3e-104 349.4 3.7 1.5e-104 349.2 3.7 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|312136607|ref|YP_004003944.1| - 3.9e-13 49.6 0.0 7.5e-13 48.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|312136607|ref|YP_004003944.1| - 4.1e-10 39.5 0.1 1.2e-09 38.0 0.1 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|312136607|ref|YP_004003944.1| - 5.8e-08 32.9 0.1 4.3e-06 26.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|312136607|ref|YP_004003944.1| - 9.7e-06 25.0 0.5 9.7e-05 21.7 0.1 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|312136607|ref|YP_004003944.1| - 1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|312136607|ref|YP_004003944.1| - 0.00095 18.2 0.1 0.0015 17.6 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|312136607|ref|YP_004003944.1| - 0.0012 19.2 0.0 0.0021 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|312136607|ref|YP_004003944.1| - 0.0037 16.5 0.1 0.0065 15.7 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.27 gi|312136607|ref|YP_004003944.1| - 0.0044 17.5 0.1 0.01 16.4 0.0 1.6 2 0 0 2 2 2 1 ABC transporter DUF87 PF01935.17 gi|312136607|ref|YP_004003944.1| - 0.013 15.6 0.4 0.035 14.2 0.0 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain PglD_N PF17836.1 gi|312136607|ref|YP_004003944.1| - 0.017 15.8 0.8 0.062 14.0 0.1 2.1 2 0 0 2 2 2 0 PglD N-terminal domain DUF1847 PF08901.11 gi|312136607|ref|YP_004003944.1| - 0.018 14.7 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) RNA_helicase PF00910.22 gi|312136607|ref|YP_004003944.1| - 0.03 14.7 0.0 0.088 13.2 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|312136607|ref|YP_004003944.1| - 0.03 13.9 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|312136607|ref|YP_004003944.1| - 0.034 14.4 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|312136607|ref|YP_004003944.1| - 0.041 13.4 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|312136607|ref|YP_004003944.1| - 0.072 13.1 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|312136607|ref|YP_004003944.1| - 0.075 13.1 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|312136607|ref|YP_004003944.1| - 0.086 12.0 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|312136607|ref|YP_004003944.1| - 0.098 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|312136607|ref|YP_004003944.1| - 0.12 12.0 0.2 0.13 11.9 0.2 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 gi|312136607|ref|YP_004003944.1| - 0.14 11.8 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TPP_enzyme_N PF02776.18 gi|312136607|ref|YP_004003944.1| - 0.17 11.5 0.0 0.61 9.7 0.0 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NACHT PF05729.12 gi|312136607|ref|YP_004003944.1| - 0.23 11.4 0.0 0.42 10.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF123 PF01986.16 gi|312136608|ref|YP_004003945.1| - 7.4e-28 96.9 0.1 1e-27 96.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|312136608|ref|YP_004003945.1| - 0.0028 17.9 0.6 0.0028 17.9 0.6 2.0 2 1 0 2 2 2 1 GIY-YIG catalytic domain DUF371 PF04027.13 gi|312136609|ref|YP_004003946.1| - 6.5e-55 184.7 0.3 7.4e-55 184.5 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Peptidase_U40 PF10464.9 gi|312136609|ref|YP_004003946.1| - 0.2 11.3 0.1 0.29 10.8 0.1 1.2 1 0 0 1 1 1 0 Peptidase U40 DUF167 PF02594.16 gi|312136610|ref|YP_004003947.1| - 5.2e-20 71.4 0.5 7.2e-20 70.9 0.5 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF111 PF01969.17 gi|312136611|ref|YP_004003948.1| - 5e-99 331.9 0.1 1.3e-98 330.5 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF111 QueC PF06508.13 gi|312136612|ref|YP_004003949.1| - 5.4e-69 231.9 0.0 6.1e-69 231.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|312136612|ref|YP_004003949.1| - 6.5e-11 42.2 0.1 1.2e-09 38.0 0.1 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|312136612|ref|YP_004003949.1| - 7.9e-08 32.3 0.0 1.5e-06 28.1 0.0 2.1 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|312136612|ref|YP_004003949.1| - 0.00083 19.1 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.19 gi|312136612|ref|YP_004003949.1| - 0.0038 16.6 0.0 0.0091 15.3 0.0 1.6 2 0 0 2 2 2 1 Arginosuccinate synthase tRNA_Me_trans PF03054.16 gi|312136612|ref|YP_004003949.1| - 0.008 15.0 0.0 0.014 14.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|312136612|ref|YP_004003949.1| - 0.023 13.8 0.0 0.12 11.5 0.0 2.0 2 0 0 2 2 2 0 NAD synthase PYC_OADA PF02436.18 gi|312136613|ref|YP_004003950.1| - 9.8e-56 188.6 1.6 4.9e-55 186.4 0.5 2.2 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|312136613|ref|YP_004003950.1| - 4.3e-46 157.6 0.0 5.9e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|312136613|ref|YP_004003950.1| - 3e-21 75.0 5.3 8.1e-21 73.6 5.3 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|312136613|ref|YP_004003950.1| - 5.5e-14 51.7 0.8 3.4e-06 26.8 0.9 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|312136613|ref|YP_004003950.1| - 3.7e-07 29.6 0.7 0.0057 15.9 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|312136613|ref|YP_004003950.1| - 1.3e-06 29.1 0.5 0.0066 17.1 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein QRPTase_N PF02749.16 gi|312136613|ref|YP_004003950.1| - 0.00032 20.7 0.6 0.27 11.3 0.2 2.7 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 gi|312136613|ref|YP_004003950.1| - 0.00042 20.2 1.3 0.0013 18.7 0.6 2.2 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|312136613|ref|YP_004003950.1| - 0.003 17.4 1.3 0.0076 16.1 1.3 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|312136613|ref|YP_004003950.1| - 0.0035 17.5 0.4 0.085 13.1 0.2 2.4 1 1 1 2 2 2 1 Peptidase family M23 PYNP_C PF07831.13 gi|312136613|ref|YP_004003950.1| - 0.0051 16.4 1.3 0.55 9.9 0.3 2.5 1 1 1 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 gi|312136613|ref|YP_004003950.1| - 0.0074 15.8 2.5 0.027 13.9 2.0 1.9 1 1 1 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2118 PF09891.9 gi|312136613|ref|YP_004003950.1| - 0.0089 16.0 0.9 0.0089 16.0 0.9 2.7 3 1 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2118) PTS_EIIA_1 PF00358.20 gi|312136613|ref|YP_004003950.1| - 0.058 13.2 2.6 1.4 8.7 0.5 2.8 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YqfD PF06898.11 gi|312136613|ref|YP_004003950.1| - 0.12 11.2 8.6 1.5 7.5 3.2 2.8 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD RAP1 PF07218.11 gi|312136613|ref|YP_004003950.1| - 0.88 7.8 5.6 5.8 5.1 0.5 2.4 2 0 0 2 2 2 0 Rhoptry-associated protein 1 (RAP-1) TPP_enzyme_C PF02775.21 gi|312136614|ref|YP_004003951.1| - 4.8e-19 68.6 0.0 1.1e-18 67.4 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|312136615|ref|YP_004003952.1| - 3.1e-11 43.2 0.0 3.4e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|312136615|ref|YP_004003952.1| - 0.00048 19.9 0.0 0.00062 19.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HetR_C PF18460.1 gi|312136615|ref|YP_004003952.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain Ldh_2 PF02615.14 gi|312136616|ref|YP_004003953.1| - 4.7e-125 417.2 0.0 5.2e-125 417.0 0.0 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase Spore_YhcN_YlaJ PF09580.10 gi|312136616|ref|YP_004003953.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AIRS_C PF02769.22 gi|312136617|ref|YP_004003954.1| - 1.3e-25 90.3 0.0 2.1e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|312136617|ref|YP_004003954.1| - 1.4e-16 61.0 0.5 2.2e-16 60.2 0.5 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain KH_7 PF17214.3 gi|312136618|ref|YP_004003955.1| - 2e-30 104.5 6.0 3.7e-28 97.3 1.4 2.8 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|312136618|ref|YP_004003955.1| - 5.6e-25 87.8 0.0 1.3e-24 86.6 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|312136618|ref|YP_004003955.1| - 5.6e-18 65.1 0.0 1.6e-17 63.6 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|312136618|ref|YP_004003955.1| - 2.1e-14 53.2 0.0 4.5e-14 52.1 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|312136618|ref|YP_004003955.1| - 1.4e-12 48.1 0.0 4.6e-08 33.3 0.0 3.4 2 1 1 3 3 3 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312136618|ref|YP_004003955.1| - 1.1e-09 38.1 0.1 1.9e-09 37.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|312136618|ref|YP_004003955.1| - 0.0056 16.6 0.0 0.018 15.0 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|312136618|ref|YP_004003955.1| - 0.0082 15.9 10.9 0.2 11.5 2.3 2.9 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|312136618|ref|YP_004003955.1| - 0.016 15.0 1.8 0.02 14.7 0.3 2.0 2 0 0 2 2 2 0 KH domain VHL_C PF17211.3 gi|312136618|ref|YP_004003955.1| - 0.12 12.4 0.9 0.46 10.5 0.9 2.0 1 0 0 1 1 1 0 VHL box domain KH_1 PF00013.29 gi|312136618|ref|YP_004003955.1| - 0.32 10.8 4.1 0.58 10.0 0.4 2.6 1 1 1 2 2 2 0 KH domain Proteasome PF00227.26 gi|312136619|ref|YP_004003956.1| - 1e-60 204.5 0.5 1.2e-60 204.3 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1297 PF06973.12 gi|312136620|ref|YP_004003957.1| - 3.5e-87 290.8 0.1 4.7e-87 290.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|312136620|ref|YP_004003957.1| - 2.2e-51 172.9 0.0 3.9e-51 172.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|312136620|ref|YP_004003957.1| - 0.034 13.6 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|312136620|ref|YP_004003957.1| - 0.15 11.6 0.0 0.38 10.3 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain Met_10 PF02475.16 gi|312136621|ref|YP_004003958.1| - 2.5e-68 229.8 0.4 3.6e-68 229.2 0.4 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|312136621|ref|YP_004003958.1| - 1.1e-06 28.7 0.3 3.2e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain TRM PF02005.16 gi|312136621|ref|YP_004003958.1| - 1.3e-06 27.8 0.0 1.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|312136621|ref|YP_004003958.1| - 1.7e-06 27.7 0.0 3.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|312136621|ref|YP_004003958.1| - 8.8e-06 25.3 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|312136621|ref|YP_004003958.1| - 1.1e-05 25.0 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|312136621|ref|YP_004003958.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|312136621|ref|YP_004003958.1| - 0.0014 19.3 0.0 0.0062 17.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain DNA_methylase PF00145.17 gi|312136621|ref|YP_004003958.1| - 0.0019 17.6 0.1 0.0036 16.7 0.0 1.5 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Methyltransf_31 PF13847.6 gi|312136621|ref|YP_004003958.1| - 0.002 17.9 0.0 0.0052 16.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 gi|312136621|ref|YP_004003958.1| - 0.01 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|312136621|ref|YP_004003958.1| - 0.014 14.4 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PRMT5 PF05185.16 gi|312136621|ref|YP_004003958.1| - 0.035 14.0 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase GidB PF02527.15 gi|312136621|ref|YP_004003958.1| - 0.043 13.2 0.2 0.23 10.8 0.0 2.1 2 1 0 2 2 2 0 rRNA small subunit methyltransferase G Methyltransf_32 PF13679.6 gi|312136621|ref|YP_004003958.1| - 0.081 12.9 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|312136621|ref|YP_004003958.1| - 0.12 12.2 0.0 1 9.2 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|312136621|ref|YP_004003958.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Radical_SAM PF04055.21 gi|312136622|ref|YP_004003959.1| - 1.8e-15 57.7 0.2 4.5e-15 56.4 0.1 1.7 1 1 1 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|312136622|ref|YP_004003959.1| - 0.16 12.2 0.0 0.4 10.9 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain DUF2120 PF09893.9 gi|312136623|ref|YP_004003960.1| - 8.9e-53 178.0 3.5 1e-52 177.9 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) DUF1779 PF08680.10 gi|312136623|ref|YP_004003960.1| - 0.013 15.7 0.5 0.018 15.2 0.1 1.5 2 0 0 2 2 2 0 TATA-box binding RPAP1_N PF08621.10 gi|312136623|ref|YP_004003960.1| - 0.017 14.9 1.6 0.04 13.7 1.6 1.6 1 0 0 1 1 1 0 RPAP1-like, N-terminal SpoVT_C PF15714.5 gi|312136623|ref|YP_004003960.1| - 0.033 14.3 1.1 0.04 14.0 1.1 1.4 1 1 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor ATP-cone PF03477.16 gi|312136623|ref|YP_004003960.1| - 0.19 12.3 1.6 0.6 10.7 1.5 1.9 1 1 0 1 1 1 0 ATP cone domain GCHY-1 PF02649.14 gi|312136624|ref|YP_004003961.1| - 2.5e-81 273.0 3.4 2.8e-81 272.8 3.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|312136624|ref|YP_004003961.1| - 0.2 12.2 2.3 0.21 12.1 0.1 2.2 3 1 1 4 4 4 0 Dihydroneopterin aldolase DUF2100 PF09873.9 gi|312136625|ref|YP_004003962.1| - 4.4e-73 245.7 21.6 5.1e-73 245.5 21.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) Mg296 PF09644.10 gi|312136625|ref|YP_004003962.1| - 0.015 15.4 6.3 0.11 12.7 0.2 2.6 2 1 0 2 2 2 0 Mg296 protein Ubiquitin_3 PF14836.6 gi|312136625|ref|YP_004003962.1| - 0.03 14.3 1.5 0.072 13.1 0.1 2.3 3 0 0 3 3 3 0 Ubiquitin-like domain UvrD-helicase PF00580.21 gi|312136625|ref|YP_004003962.1| - 0.6 9.6 6.0 0.79 9.2 6.0 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain SAS4 PF15460.6 gi|312136625|ref|YP_004003962.1| - 0.68 10.1 6.6 0.63 10.2 1.7 2.4 2 1 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 Hist_deacetyl PF00850.19 gi|312136626|ref|YP_004003963.1| - 1.6e-82 277.4 0.0 2.6e-82 276.8 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain HTH_24 PF13412.6 gi|312136627|ref|YP_004003964.1| - 3.1e-19 68.3 1.2 5.5e-19 67.5 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|312136627|ref|YP_004003964.1| - 3.7e-16 58.7 0.0 6.1e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|312136627|ref|YP_004003964.1| - 1.2e-10 41.2 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|312136627|ref|YP_004003964.1| - 1.6e-08 34.4 0.0 2.7e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|312136627|ref|YP_004003964.1| - 1.4e-06 27.9 0.0 2.3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|312136627|ref|YP_004003964.1| - 1.5e-06 27.9 0.3 9e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|312136627|ref|YP_004003964.1| - 4.4e-05 23.2 0.1 8.2e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|312136627|ref|YP_004003964.1| - 4.4e-05 23.3 0.0 9.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|312136627|ref|YP_004003964.1| - 4.5e-05 23.1 0.0 8.4e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|312136627|ref|YP_004003964.1| - 8.4e-05 22.4 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|312136627|ref|YP_004003964.1| - 0.0001 21.8 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|312136627|ref|YP_004003964.1| - 0.00016 21.5 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|312136627|ref|YP_004003964.1| - 0.00019 22.0 2.9 0.0024 18.5 0.3 2.4 2 1 0 2 2 2 1 Replication protein A C terminal HTH_Mga PF08280.11 gi|312136627|ref|YP_004003964.1| - 0.0004 20.4 0.0 0.00069 19.6 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|312136627|ref|YP_004003964.1| - 0.00082 19.4 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|312136627|ref|YP_004003964.1| - 0.0014 19.1 0.0 0.0029 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|312136627|ref|YP_004003964.1| - 0.0014 18.3 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|312136627|ref|YP_004003964.1| - 0.0014 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.10 gi|312136627|ref|YP_004003964.1| - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|312136627|ref|YP_004003964.1| - 0.0031 17.3 0.1 0.0087 15.8 0.0 1.8 2 0 0 2 2 1 1 LexA DNA binding domain FeoC PF09012.10 gi|312136627|ref|YP_004003964.1| - 0.0038 17.3 0.0 0.0096 16.0 0.0 1.6 2 0 0 2 2 1 1 FeoC like transcriptional regulator HTH_38 PF13936.6 gi|312136627|ref|YP_004003964.1| - 0.0039 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RepL PF05732.11 gi|312136627|ref|YP_004003964.1| - 0.0042 16.5 0.6 0.0042 16.5 0.6 1.6 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.7 gi|312136627|ref|YP_004003964.1| - 0.0059 16.6 0.0 0.0088 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|312136627|ref|YP_004003964.1| - 0.012 15.7 0.2 0.023 14.9 0.2 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4423 PF14394.6 gi|312136627|ref|YP_004003964.1| - 0.013 15.2 0.0 0.031 14.0 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|312136627|ref|YP_004003964.1| - 0.015 15.3 0.1 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|312136627|ref|YP_004003964.1| - 0.017 15.2 0.3 0.098 12.8 0.0 2.0 2 0 0 2 2 2 0 Trp repressor protein HxlR PF01638.17 gi|312136627|ref|YP_004003964.1| - 0.021 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|312136627|ref|YP_004003964.1| - 0.03 13.7 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.6 gi|312136627|ref|YP_004003964.1| - 0.03 14.5 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TnsD PF15978.5 gi|312136627|ref|YP_004003964.1| - 0.035 13.1 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_9 PF08221.11 gi|312136627|ref|YP_004003964.1| - 0.041 14.0 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF742 PF05331.11 gi|312136627|ref|YP_004003964.1| - 0.042 13.7 0.0 0.078 12.8 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF742) DDRGK PF09756.9 gi|312136627|ref|YP_004003964.1| - 0.044 13.4 1.7 0.088 12.4 0.2 1.9 2 0 0 2 2 2 0 DDRGK domain Fe_dep_repress PF01325.19 gi|312136627|ref|YP_004003964.1| - 0.053 13.7 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2089 PF09862.9 gi|312136627|ref|YP_004003964.1| - 0.059 13.4 0.4 0.48 10.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) PAX PF00292.18 gi|312136627|ref|YP_004003964.1| - 0.062 13.2 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 'Paired box' domain HTH_29 PF13551.6 gi|312136627|ref|YP_004003964.1| - 0.065 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_50 PF18024.1 gi|312136627|ref|YP_004003964.1| - 0.079 12.6 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain NdhM PF10664.9 gi|312136627|ref|YP_004003964.1| - 0.089 13.1 0.4 9.1 6.6 0.1 2.5 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M HTH_47 PF16221.5 gi|312136627|ref|YP_004003964.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|312136627|ref|YP_004003964.1| - 0.17 11.9 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HypA PF01155.19 gi|312136628|ref|YP_004003965.1| - 2.1e-32 111.4 3.4 2.4e-32 111.3 3.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|312136628|ref|YP_004003965.1| - 0.075 13.1 4.3 0.14 12.2 4.3 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|312136628|ref|YP_004003965.1| - 0.3 11.5 7.9 2.1 8.8 0.6 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar cobW PF02492.19 gi|312136629|ref|YP_004003966.1| - 4e-27 94.9 2.9 5.9e-27 94.4 2.9 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|312136629|ref|YP_004003966.1| - 3.6e-11 42.6 1.8 3.5e-07 29.5 1.1 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|312136629|ref|YP_004003966.1| - 6.3e-05 22.9 1.1 0.19 11.6 0.1 2.3 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|312136629|ref|YP_004003966.1| - 0.00032 20.3 1.4 0.49 9.9 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.12 gi|312136629|ref|YP_004003966.1| - 0.0011 18.3 0.1 0.0023 17.3 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin IMPDH PF00478.25 gi|312136629|ref|YP_004003966.1| - 0.0014 17.7 7.8 0.15 11.0 1.4 2.0 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain KAP_NTPase PF07693.14 gi|312136629|ref|YP_004003966.1| - 0.002 17.4 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain ATPase_2 PF01637.18 gi|312136629|ref|YP_004003966.1| - 0.002 18.1 0.6 0.0047 16.9 0.6 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Arf PF00025.21 gi|312136629|ref|YP_004003966.1| - 0.0023 17.4 0.7 0.2 11.1 0.1 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family SRP54 PF00448.22 gi|312136629|ref|YP_004003966.1| - 0.0025 17.5 0.2 0.0055 16.4 0.2 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MMR_HSR1_Xtn PF16897.5 gi|312136629|ref|YP_004003966.1| - 0.0061 16.6 2.3 0.013 15.5 0.5 2.5 1 1 1 2 2 2 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 gi|312136629|ref|YP_004003966.1| - 0.0071 16.2 0.3 0.8 9.4 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|312136629|ref|YP_004003966.1| - 0.0075 16.2 2.7 0.11 12.4 2.7 2.2 1 1 0 1 1 1 1 NTPase MobB PF03205.14 gi|312136629|ref|YP_004003966.1| - 0.0098 15.8 0.0 0.027 14.4 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF3929 PF13066.6 gi|312136629|ref|YP_004003966.1| - 0.012 15.6 2.1 1.6 8.9 0.1 3.4 3 1 0 4 4 3 0 Protein of unknown function (DUF3929) TsaE PF02367.17 gi|312136629|ref|YP_004003966.1| - 0.014 15.4 0.1 0.024 14.7 0.1 1.4 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|312136629|ref|YP_004003966.1| - 0.025 15.1 0.1 0.052 14.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|312136629|ref|YP_004003966.1| - 0.034 14.5 0.0 0.046 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|312136629|ref|YP_004003966.1| - 0.045 14.2 1.6 0.072 13.5 0.0 2.2 3 0 0 3 3 3 0 AAA domain PduV-EutP PF10662.9 gi|312136629|ref|YP_004003966.1| - 0.046 13.5 3.7 5.8 6.7 0.5 2.8 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation TrwB_AAD_bind PF10412.9 gi|312136629|ref|YP_004003966.1| - 0.048 12.6 0.0 0.071 12.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|312136629|ref|YP_004003966.1| - 0.055 13.7 0.0 0.22 11.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|312136629|ref|YP_004003966.1| - 0.077 13.4 1.0 0.2 12.0 0.6 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|312136629|ref|YP_004003966.1| - 0.083 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF354 PF04007.12 gi|312136630|ref|YP_004003967.1| - 6.2e-148 492.4 5.0 7e-148 492.2 5.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) LpxB PF02684.15 gi|312136630|ref|YP_004003967.1| - 0.0079 15.1 0.0 0.014 14.2 0.0 1.5 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase Glyco_trans_4_2 PF13477.6 gi|312136630|ref|YP_004003967.1| - 0.014 15.5 0.2 0.031 14.3 0.2 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Epimerase_2 PF02350.19 gi|312136630|ref|YP_004003967.1| - 0.014 14.3 0.0 0.021 13.7 0.0 1.4 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glyco_hydro_57 PF03065.15 gi|312136630|ref|YP_004003967.1| - 0.057 12.6 0.0 0.13 11.5 0.0 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase family 57 P-II PF00543.22 gi|312136630|ref|YP_004003967.1| - 0.075 13.6 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II Glyco_transf_28 PF03033.20 gi|312136630|ref|YP_004003967.1| - 0.089 12.8 0.8 0.19 11.8 0.2 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Endonuclease_5 PF04493.14 gi|312136631|ref|YP_004003968.1| - 8e-56 188.9 0.3 1.6e-55 187.9 0.3 1.4 1 1 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|312136631|ref|YP_004003968.1| - 0.00051 19.5 0.0 0.0018 17.7 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF99 Pyr_redox_2 PF07992.14 gi|312136632|ref|YP_004003969.1| - 5.9e-61 206.3 3.2 8e-61 205.8 3.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|312136632|ref|YP_004003969.1| - 2.8e-23 82.3 6.9 7.7e-19 68.0 0.8 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|312136632|ref|YP_004003969.1| - 2.2e-16 60.1 0.0 9.3e-16 58.1 0.0 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|312136632|ref|YP_004003969.1| - 4.3e-16 59.0 5.0 1.3e-14 54.2 0.8 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|312136632|ref|YP_004003969.1| - 3.7e-07 29.2 1.8 0.14 10.9 0.4 3.7 3 1 1 4 4 4 3 HI0933-like protein DAO PF01266.24 gi|312136632|ref|YP_004003969.1| - 5.8e-07 29.4 4.1 0.52 9.8 0.1 3.9 3 1 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|312136632|ref|YP_004003969.1| - 1.8e-06 28.0 0.1 0.0075 16.5 0.1 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|312136632|ref|YP_004003969.1| - 5.5e-06 25.7 0.0 0.0096 15.0 0.1 3.2 1 1 1 3 3 3 2 FAD binding domain K_oxygenase PF13434.6 gi|312136632|ref|YP_004003969.1| - 0.0013 17.9 0.1 0.13 11.4 0.0 3.2 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|312136632|ref|YP_004003969.1| - 0.025 14.6 0.5 15 5.6 0.0 3.5 3 1 1 4 4 4 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|312136632|ref|YP_004003969.1| - 0.031 13.5 2.8 0.35 10.1 0.0 3.0 2 1 1 3 3 3 0 Thi4 family Trp_halogenase PF04820.14 gi|312136632|ref|YP_004003969.1| - 0.041 12.7 0.1 1.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|312136632|ref|YP_004003969.1| - 0.053 13.8 0.5 2.4 8.5 0.1 2.7 2 1 0 2 2 2 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|312136632|ref|YP_004003969.1| - 0.14 11.2 0.9 2.3 7.2 0.0 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|312136632|ref|YP_004003969.1| - 0.19 11.0 0.3 0.61 9.4 0.0 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|312136632|ref|YP_004003969.1| - 0.65 9.0 12.7 5.8 5.9 0.0 4.3 3 2 2 5 5 5 0 Glucose inhibited division protein A Peptidase_M50 PF02163.22 gi|312136633|ref|YP_004003970.1| - 2.5e-24 85.9 2.4 9e-24 84.1 2.4 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|312136633|ref|YP_004003970.1| - 1.4e-05 25.3 0.0 2.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|312136633|ref|YP_004003970.1| - 0.0001 22.5 0.0 0.00027 21.2 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|312136633|ref|YP_004003970.1| - 0.031 14.1 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 PDZ domain PDZ_1 PF12812.7 gi|312136633|ref|YP_004003970.1| - 0.048 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain DUF418 PF04235.12 gi|312136633|ref|YP_004003970.1| - 0.21 11.5 3.4 2.9 7.8 1.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF418) FA_desaturase PF00487.24 gi|312136633|ref|YP_004003970.1| - 4.5 7.0 8.9 8.5 6.1 0.2 2.7 2 1 1 3 3 3 0 Fatty acid desaturase MoeA_N PF03453.17 gi|312136634|ref|YP_004003971.1| - 5.4e-43 146.5 0.2 1.1e-42 145.4 0.0 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|312136634|ref|YP_004003971.1| - 6.7e-23 80.9 0.1 1e-22 80.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|312136634|ref|YP_004003971.1| - 2.4e-18 66.0 0.0 5.8e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ABC_tran PF00005.27 gi|312136635|ref|YP_004003972.1| - 1.2e-33 116.5 0.0 2.4e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136635|ref|YP_004003972.1| - 4.1e-13 49.8 0.1 1.8e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|312136635|ref|YP_004003972.1| - 5.2e-08 33.5 2.5 1.6e-07 31.9 2.5 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 gi|312136635|ref|YP_004003972.1| - 0.0002 21.3 0.0 0.00043 20.3 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|312136635|ref|YP_004003972.1| - 0.0003 20.6 2.9 0.0051 16.6 0.4 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_23 PF13476.6 gi|312136635|ref|YP_004003972.1| - 0.0019 18.7 2.4 0.0019 18.7 2.4 2.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|312136635|ref|YP_004003972.1| - 0.0051 16.5 0.0 0.04 13.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|312136635|ref|YP_004003972.1| - 0.0097 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GTP_EFTU_D2 PF03144.25 gi|312136635|ref|YP_004003972.1| - 0.021 15.2 0.3 0.13 12.7 0.3 2.5 1 1 0 1 1 1 0 Elongation factor Tu domain 2 ATPase_2 PF01637.18 gi|312136635|ref|YP_004003972.1| - 0.021 14.7 1.1 0.03 14.3 0.1 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|312136635|ref|YP_004003972.1| - 0.022 14.2 1.4 0.94 8.9 0.0 2.6 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|312136635|ref|YP_004003972.1| - 0.04 14.3 0.9 0.25 11.8 0.4 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) zf-DNA_Pol PF08996.10 gi|312136635|ref|YP_004003972.1| - 0.081 12.7 0.3 0.21 11.3 0.1 1.7 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger AAA_27 PF13514.6 gi|312136635|ref|YP_004003972.1| - 0.09 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|312136635|ref|YP_004003972.1| - 0.1 12.9 0.3 0.35 11.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|312136635|ref|YP_004003972.1| - 0.17 12.2 0.3 0.74 10.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|312136635|ref|YP_004003972.1| - 0.19 12.1 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane_3 PF12698.7 gi|312136636|ref|YP_004003973.1| - 6.7e-13 48.5 41.4 6.7e-12 45.2 41.1 2.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|312136636|ref|YP_004003973.1| - 3.8e-08 33.0 26.9 9.4e-08 31.7 26.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|312136636|ref|YP_004003973.1| - 6.3e-07 29.0 17.3 6.3e-07 29.0 17.3 2.8 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|312136636|ref|YP_004003973.1| - 0.03 13.9 41.1 0.017 14.7 32.4 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|312136637|ref|YP_004003974.1| - 2.1e-23 83.0 30.1 2.5e-23 82.7 30.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|312136637|ref|YP_004003974.1| - 3.7e-15 56.0 12.2 5.6e-15 55.4 12.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|312136637|ref|YP_004003974.1| - 2.8e-07 30.2 19.1 2.8e-07 30.2 19.1 2.5 3 1 0 3 3 3 1 ABC-2 type transporter Pribosyltran_N PF13793.6 gi|312136638|ref|YP_004003975.1| - 4.2e-32 110.5 0.2 5.6e-28 97.2 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|312136638|ref|YP_004003975.1| - 7.9e-23 80.7 1.3 4.3e-22 78.3 0.6 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|312136638|ref|YP_004003975.1| - 6.8e-09 36.0 3.8 6e-08 32.9 0.5 2.7 2 1 1 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|312136638|ref|YP_004003975.1| - 0.00016 21.2 0.1 0.00028 20.4 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|312136638|ref|YP_004003975.1| - 0.00099 18.7 0.1 0.0022 17.5 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase PRTase_3 PF15610.6 gi|312136638|ref|YP_004003975.1| - 0.032 13.5 0.1 0.047 12.9 0.1 1.3 1 0 0 1 1 1 0 PRTase ComF-like AAA_32 PF13654.6 gi|312136639|ref|YP_004003976.1| - 4.1e-34 118.3 0.1 2.9e-24 85.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Lon_C PF05362.13 gi|312136639|ref|YP_004003976.1| - 2e-33 115.7 2.0 3.9e-33 114.7 2.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Mg_chelatase PF01078.21 gi|312136639|ref|YP_004003976.1| - 5.9e-19 68.3 0.1 5e-10 39.1 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|312136639|ref|YP_004003976.1| - 6.5e-19 68.3 0.1 6.7e-10 38.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|312136639|ref|YP_004003976.1| - 1.5e-12 47.7 0.0 3.1e-05 24.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|312136639|ref|YP_004003976.1| - 2.7e-10 40.5 0.0 0.00031 20.9 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain MCM PF00493.23 gi|312136639|ref|YP_004003976.1| - 1.2e-09 37.6 0.1 0.00061 19.0 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain ChlI PF13541.6 gi|312136639|ref|YP_004003976.1| - 1.5e-09 37.8 0.5 4.8e-09 36.1 0.5 1.9 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|312136639|ref|YP_004003976.1| - 7.9e-08 32.8 0.0 0.0055 17.1 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|312136639|ref|YP_004003976.1| - 1.8e-06 28.3 0.0 6.7e-05 23.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|312136639|ref|YP_004003976.1| - 3.2e-06 27.0 0.1 0.082 12.7 0.1 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|312136639|ref|YP_004003976.1| - 1.4e-05 25.4 0.9 0.00043 20.6 0.9 2.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|312136639|ref|YP_004003976.1| - 1.8e-05 24.5 0.2 0.023 14.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|312136639|ref|YP_004003976.1| - 3.3e-05 23.7 0.0 0.02 14.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|312136639|ref|YP_004003976.1| - 8e-05 22.2 0.1 0.00036 20.1 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|312136639|ref|YP_004003976.1| - 9.7e-05 22.8 0.0 0.00027 21.4 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|312136639|ref|YP_004003976.1| - 0.00028 20.7 0.0 0.0012 18.6 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein PhoH PF02562.16 gi|312136639|ref|YP_004003976.1| - 0.00085 18.8 0.1 0.0023 17.4 0.0 1.8 2 0 0 2 2 1 1 PhoH-like protein NACHT PF05729.12 gi|312136639|ref|YP_004003976.1| - 0.0014 18.5 0.0 0.007 16.3 0.0 2.0 2 0 0 2 2 2 1 NACHT domain Parvo_NS1 PF01057.17 gi|312136639|ref|YP_004003976.1| - 0.0028 16.8 0.0 0.0056 15.8 0.0 1.4 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 ResIII PF04851.15 gi|312136639|ref|YP_004003976.1| - 0.0029 17.6 1.1 0.034 14.1 0.0 2.6 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_PrkA PF08298.11 gi|312136639|ref|YP_004003976.1| - 0.004 16.1 0.2 1.8 7.4 0.0 2.6 2 0 0 2 2 2 2 PrkA AAA domain AAA_2 PF07724.14 gi|312136639|ref|YP_004003976.1| - 0.0044 17.1 0.0 4.9 7.2 0.0 3.2 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) TniB PF05621.11 gi|312136639|ref|YP_004003976.1| - 0.0053 16.2 1.3 0.15 11.4 0.0 2.9 2 1 1 3 3 3 1 Bacterial TniB protein MCM_lid PF17855.1 gi|312136639|ref|YP_004003976.1| - 0.0091 16.4 0.4 0.056 13.9 0.0 2.5 1 1 1 2 2 2 1 MCM AAA-lid domain DUF815 PF05673.13 gi|312136639|ref|YP_004003976.1| - 0.011 14.9 0.0 0.026 13.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_29 PF13555.6 gi|312136639|ref|YP_004003976.1| - 0.012 15.3 0.0 0.042 13.6 0.0 1.9 2 0 0 2 2 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|312136639|ref|YP_004003976.1| - 0.019 15.5 0.0 0.056 14.0 0.0 1.9 1 0 0 1 1 1 0 ABC transporter ATPase PF06745.13 gi|312136639|ref|YP_004003976.1| - 0.022 14.1 0.1 0.16 11.3 0.0 2.2 2 0 0 2 2 2 0 KaiC TraL PF07178.11 gi|312136639|ref|YP_004003976.1| - 0.022 15.2 2.0 0.044 14.3 2.0 1.4 1 0 0 1 1 1 0 TraL protein T2SSE PF00437.20 gi|312136639|ref|YP_004003976.1| - 0.026 13.6 0.0 0.087 11.9 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_10 PF12846.7 gi|312136639|ref|YP_004003976.1| - 0.046 12.6 0.0 0.23 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.6 gi|312136639|ref|YP_004003976.1| - 0.049 13.4 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|312136639|ref|YP_004003976.1| - 0.056 14.0 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|312136639|ref|YP_004003976.1| - 0.089 12.7 0.1 0.45 10.4 0.0 2.2 3 0 0 3 3 1 0 RsgA GTPase RNA_helicase PF00910.22 gi|312136639|ref|YP_004003976.1| - 0.089 13.2 0.0 0.34 11.3 0.0 2.1 2 0 0 2 2 1 0 RNA helicase DAP3 PF10236.9 gi|312136639|ref|YP_004003976.1| - 0.09 11.9 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Ploopntkinase3 PF18751.1 gi|312136639|ref|YP_004003976.1| - 0.099 12.5 0.2 0.31 10.9 0.0 2.0 2 0 0 2 2 1 0 P-loop Nucleotide Kinase3 DUF2075 PF09848.9 gi|312136639|ref|YP_004003976.1| - 0.1 11.8 0.0 0.29 10.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Cyclin_C PF02984.19 gi|312136639|ref|YP_004003976.1| - 0.1 12.7 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Cyclin, C-terminal domain GATase_3 PF07685.14 gi|312136640|ref|YP_004003977.1| - 1.2e-54 184.9 0.1 2e-54 184.2 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|312136640|ref|YP_004003977.1| - 8.7e-21 74.3 0.4 4.7e-20 71.9 0.1 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|312136640|ref|YP_004003977.1| - 2.2e-20 73.3 0.2 5.5e-19 68.8 0.2 2.5 1 1 0 1 1 1 1 AAA domain SNO PF01174.19 gi|312136640|ref|YP_004003977.1| - 4.4e-05 23.4 0.0 9.7e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.14 gi|312136640|ref|YP_004003977.1| - 0.00027 20.8 0.8 0.17 11.8 0.0 3.6 4 0 0 4 4 4 1 Molybdopterin guanine dinucleotide synthesis protein B DUF3725 PF12523.8 gi|312136640|ref|YP_004003977.1| - 0.061 13.6 0.1 2.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) GATase_5 PF13507.6 gi|312136640|ref|YP_004003977.1| - 0.063 12.4 0.0 0.21 10.7 0.0 1.8 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|312136640|ref|YP_004003977.1| - 0.074 12.8 0.0 0.25 11.1 0.0 1.9 2 0 0 2 2 2 0 Glutamine amidotransferase class-I Cupin_2 PF07883.11 gi|312136641|ref|YP_004003978.1| - 1.6e-17 63.0 0.0 2.8e-17 62.2 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 gi|312136641|ref|YP_004003978.1| - 5.1e-10 39.3 0.1 7.5e-10 38.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|312136641|ref|YP_004003978.1| - 5.1e-08 32.8 0.2 1e-07 31.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.18 gi|312136641|ref|YP_004003978.1| - 0.00016 21.6 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase HTH_31 PF13560.6 gi|312136641|ref|YP_004003978.1| - 0.00019 21.7 0.0 0.00027 21.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.12 gi|312136641|ref|YP_004003978.1| - 0.003 17.2 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|312136641|ref|YP_004003978.1| - 0.0046 17.2 0.1 0.0087 16.2 0.1 1.4 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding PF02311.19 gi|312136641|ref|YP_004003978.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain EutQ PF06249.12 gi|312136641|ref|YP_004003978.1| - 0.025 14.3 0.1 0.041 13.6 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ MqsA_antitoxin PF15731.5 gi|312136641|ref|YP_004003978.1| - 0.055 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA AMP-binding PF00501.28 gi|312136642|ref|YP_004003979.1| - 1.3e-84 284.3 0.0 1.6e-84 284.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|312136642|ref|YP_004003979.1| - 1.7e-24 86.6 0.4 4.2e-24 85.3 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.11 gi|312136642|ref|YP_004003979.1| - 0.26 11.2 0.1 0.26 11.2 0.1 2.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1967) POR_N PF01855.19 gi|312136643|ref|YP_004003980.1| - 1.2e-54 185.6 0.0 1.5e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|312136643|ref|YP_004003980.1| - 3.9e-26 91.3 0.1 1e-25 90.0 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|312136643|ref|YP_004003980.1| - 5.3e-05 23.1 0.0 0.0001 22.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain BLOC1_2 PF10046.9 gi|312136643|ref|YP_004003980.1| - 0.061 13.6 0.3 0.061 13.6 0.3 1.7 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PhoU PF01895.19 gi|312136643|ref|YP_004003980.1| - 0.097 13.1 1.8 0.36 11.3 0.4 2.5 3 0 0 3 3 3 0 PhoU domain Transket_pyr PF02779.24 gi|312136643|ref|YP_004003980.1| - 0.11 12.2 0.2 0.17 11.5 0.2 1.3 1 0 0 1 1 1 0 Transketolase, pyrimidine binding domain IMPDH PF00478.25 gi|312136643|ref|YP_004003980.1| - 0.13 11.3 1.1 0.38 9.7 0.0 2.1 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FlaC_arch PF05377.11 gi|312136643|ref|YP_004003980.1| - 3.4 8.1 5.9 16 6.0 1.1 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) POR PF01558.18 gi|312136644|ref|YP_004003981.1| - 2.5e-34 118.9 0.0 4.3e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|312136644|ref|YP_004003981.1| - 1.9e-21 76.5 0.1 3.6e-21 75.5 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRD1_2 PF01995.16 gi|312136645|ref|YP_004003982.1| - 2.7e-158 524.4 12.8 1.1e-82 276.9 2.4 2.1 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|312136645|ref|YP_004003982.1| - 2.4e-27 94.6 4.5 5.4e-27 93.5 4.5 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|312136645|ref|YP_004003982.1| - 0.00022 21.3 1.6 0.00057 20.0 1.1 2.0 2 0 0 2 2 2 1 HTH-like domain HTH_20 PF12840.7 gi|312136645|ref|YP_004003982.1| - 0.037 14.1 0.3 0.11 12.6 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|312136645|ref|YP_004003982.1| - 0.04 14.1 0.2 0.17 12.1 0.0 2.1 2 0 0 2 2 2 0 Ferric uptake regulator family Ribosomal_L5 PF00281.19 gi|312136645|ref|YP_004003982.1| - 0.1 13.0 1.5 15 6.1 0.0 3.4 3 0 0 3 3 3 0 Ribosomal protein L5 Glu-tRNAGln PF02686.15 gi|312136646|ref|YP_004003983.1| - 0.00088 19.5 0.1 0.0012 19.1 0.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Arm-DNA-bind_4 PF14657.6 gi|312136646|ref|YP_004003983.1| - 0.11 12.3 0.7 0.11 12.3 0.7 1.8 2 0 0 2 2 2 0 Arm DNA-binding domain Homoserine_dh PF00742.19 gi|312136647|ref|YP_004003984.1| - 3.9e-54 183.2 0.3 8.5e-54 182.1 0.3 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|312136647|ref|YP_004003984.1| - 8e-11 42.6 0.1 2e-10 41.3 0.1 1.7 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|312136647|ref|YP_004003984.1| - 5.8e-09 36.0 0.8 2.5e-08 33.9 0.8 2.0 1 1 1 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|312136647|ref|YP_004003984.1| - 0.037 14.3 0.0 0.097 12.9 0.0 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PhosphMutase PF10143.9 gi|312136648|ref|YP_004003985.1| - 1.4e-61 207.3 0.0 1.9e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|312136648|ref|YP_004003985.1| - 9.5e-49 166.0 0.0 1.2e-48 165.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Actin_micro PF17003.5 gi|312136648|ref|YP_004003985.1| - 0.0011 18.3 0.2 0.0017 17.6 0.2 1.2 1 0 0 1 1 1 1 Putative actin-like family Phosphodiest PF01663.22 gi|312136648|ref|YP_004003985.1| - 0.0058 16.3 0.0 0.022 14.3 0.0 2.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase CTP_synth_N PF06418.14 gi|312136649|ref|YP_004003986.1| - 2.4e-125 417.2 0.3 3.4e-125 416.7 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|312136649|ref|YP_004003986.1| - 2.4e-59 200.3 0.0 3.7e-59 199.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|312136649|ref|YP_004003986.1| - 5.8e-13 49.1 0.0 3.2e-11 43.4 0.0 2.5 1 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|312136649|ref|YP_004003986.1| - 2.8e-05 24.2 0.0 6.9e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|312136649|ref|YP_004003986.1| - 0.0021 17.9 0.0 0.0057 16.5 0.0 1.7 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|312136649|ref|YP_004003986.1| - 0.005 16.5 0.0 0.0094 15.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|312136649|ref|YP_004003986.1| - 0.025 14.4 0.0 6.8 6.5 0.0 2.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Arc_PepC PF06819.11 gi|312136650|ref|YP_004003987.1| - 2.3e-25 88.9 4.1 4.7e-25 87.9 4.1 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.18 gi|312136650|ref|YP_004003987.1| - 7.5e-12 45.6 8.7 7.5e-12 45.6 8.7 3.0 3 1 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|312136650|ref|YP_004003987.1| - 2.1e-06 28.2 0.2 2.1e-06 28.2 0.2 3.0 3 1 0 4 4 4 1 Archaeal Peptidase A24 C-terminus Type II Flavi_DEAD PF07652.14 gi|312136650|ref|YP_004003987.1| - 0.035 14.1 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Flavivirus DEAD domain Rubrerythrin PF02915.17 gi|312136651|ref|YP_004003988.1| - 9e-17 61.8 7.5 5e-16 59.3 7.5 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|312136651|ref|YP_004003988.1| - 5.3e-08 32.9 4.7 3.7e-06 26.9 4.7 2.1 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|312136651|ref|YP_004003988.1| - 0.024 14.9 0.4 3.3 7.9 0.1 2.1 2 0 0 2 2 2 0 Ferritin-like domain MRP-S26 PF14943.6 gi|312136651|ref|YP_004003988.1| - 0.14 12.1 5.1 0.14 12.0 5.1 1.1 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 Flavodoxin_1 PF00258.25 gi|312136652|ref|YP_004003989.1| - 7.6e-12 45.6 0.0 1.2e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|312136652|ref|YP_004003989.1| - 7.4e-07 29.4 0.0 1.8e-06 28.1 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312136652|ref|YP_004003989.1| - 0.00042 19.9 0.0 0.0015 18.1 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PGM_PMM_I PF02878.16 gi|312136652|ref|YP_004003989.1| - 0.047 13.4 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DFP PF04127.15 gi|312136652|ref|YP_004003989.1| - 0.097 12.5 0.0 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein GAF_2 PF13185.6 gi|312136653|ref|YP_004003990.1| - 2.8e-15 56.8 0.0 3.3e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|312136653|ref|YP_004003990.1| - 2.4e-10 41.1 0.0 3e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|312136653|ref|YP_004003990.1| - 1e-07 32.4 0.0 1.2e-07 32.2 0.0 1.0 1 0 0 1 1 1 1 GAF domain SpoVT_C PF15714.5 gi|312136653|ref|YP_004003990.1| - 0.00084 19.4 0.2 0.0015 18.6 0.2 1.4 1 0 0 1 1 1 1 Stage V sporulation protein T C-terminal, transcription factor H_kinase_N PF12282.8 gi|312136653|ref|YP_004003990.1| - 0.086 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Signal transduction histidine kinase DUF5402 PF17393.2 gi|312136654|ref|YP_004003991.1| - 6e-56 187.5 0.5 6.8e-56 187.3 0.5 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5402) Vps39_2 PF10367.9 gi|312136654|ref|YP_004003991.1| - 0.079 13.4 0.3 0.17 12.3 0.1 1.6 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Peptidase_U32 PF01136.19 gi|312136655|ref|YP_004003992.1| - 1.3e-19 70.3 0.2 2.8e-14 52.8 0.0 2.4 2 0 0 2 2 2 2 Peptidase family U32 Radical_SAM PF04055.21 gi|312136655|ref|YP_004003992.1| - 0.0048 17.3 0.0 0.64 10.4 0.0 2.9 2 1 0 2 2 2 1 Radical SAM superfamily NanE PF04131.14 gi|312136655|ref|YP_004003992.1| - 0.064 12.4 0.0 0.23 10.6 0.0 1.9 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Glyco_hydro_97 PF10566.9 gi|312136655|ref|YP_004003992.1| - 0.15 11.3 0.0 0.67 9.2 0.0 1.8 2 0 0 2 2 2 0 Glycoside hydrolase 97 Thymidylate_kin PF02223.17 gi|312136656|ref|YP_004003993.1| - 1.4e-36 125.9 0.0 1.6e-36 125.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|312136656|ref|YP_004003993.1| - 3.9e-10 39.9 2.9 2.1e-08 34.3 2.9 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|312136656|ref|YP_004003993.1| - 1.5e-06 28.8 0.5 3.5e-06 27.6 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|312136656|ref|YP_004003993.1| - 3.8e-05 24.1 0.0 7.7e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|312136656|ref|YP_004003993.1| - 0.0012 19.1 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|312136656|ref|YP_004003993.1| - 0.0013 18.7 0.1 0.099 12.5 0.0 2.7 2 1 1 3 3 3 1 Adenylylsulphate kinase SRP54 PF00448.22 gi|312136656|ref|YP_004003993.1| - 0.0018 17.9 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SKI PF01202.22 gi|312136656|ref|YP_004003993.1| - 0.0037 17.4 0.9 1 9.5 0.2 2.5 2 1 0 2 2 2 1 Shikimate kinase CLP1_P PF16575.5 gi|312136656|ref|YP_004003993.1| - 0.0039 17.0 0.3 0.04 13.7 0.0 2.2 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|312136656|ref|YP_004003993.1| - 0.0045 16.8 0.3 0.012 15.4 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Ploopntkinase1 PF18748.1 gi|312136656|ref|YP_004003993.1| - 0.0054 16.3 0.3 0.041 13.4 0.3 2.0 1 1 0 1 1 1 1 P-loop Nucleotide Kinase1 CbiA PF01656.23 gi|312136656|ref|YP_004003993.1| - 0.0059 16.7 0.1 0.016 15.3 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|312136656|ref|YP_004003993.1| - 0.011 15.7 0.2 0.026 14.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|312136656|ref|YP_004003993.1| - 0.015 15.4 0.0 0.13 12.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|312136656|ref|YP_004003993.1| - 0.02 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HhH-GPD PF00730.25 gi|312136656|ref|YP_004003993.1| - 0.021 15.3 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Mur_ligase_M PF08245.12 gi|312136656|ref|YP_004003993.1| - 0.022 14.8 0.5 0.06 13.3 0.0 1.9 2 1 0 2 2 2 0 Mur ligase middle domain NTPase_1 PF03266.15 gi|312136656|ref|YP_004003993.1| - 0.027 14.4 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 NTPase PPK2 PF03976.14 gi|312136656|ref|YP_004003993.1| - 0.029 13.9 0.0 0.13 11.8 0.0 2.0 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) CBP_BcsQ PF06564.12 gi|312136656|ref|YP_004003993.1| - 0.047 13.2 0.0 0.4 10.1 0.0 2.2 1 1 2 3 3 3 0 Cellulose biosynthesis protein BcsQ AAA_30 PF13604.6 gi|312136656|ref|YP_004003993.1| - 0.056 13.2 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|312136656|ref|YP_004003993.1| - 0.076 13.4 0.6 0.4 11.1 0.2 2.3 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|312136656|ref|YP_004003993.1| - 0.17 10.9 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|312136656|ref|YP_004003993.1| - 0.18 11.3 1.0 0.59 9.6 0.0 2.2 2 2 1 3 3 3 0 P-loop containing dynein motor region CobN-Mg_chel PF02514.16 gi|312136657|ref|YP_004003994.1| - 9.9e-204 679.2 0.0 2e-121 406.7 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase TatD_DNase PF01026.21 gi|312136658|ref|YP_004003995.1| - 4.2e-24 85.3 0.1 5e-24 85.1 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|312136658|ref|YP_004003995.1| - 0.041 13.7 0.0 0.89 9.3 0.0 2.5 3 0 0 3 3 3 0 Amidohydrolase Lipid_DES PF08557.10 gi|312136659|ref|YP_004003996.1| - 0.083 12.4 0.6 0.22 11.0 0.6 1.7 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) AAA PF00004.29 gi|312136660|ref|YP_004003997.1| - 8.4e-09 36.0 0.4 2.5e-08 34.4 0.1 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|312136660|ref|YP_004003997.1| - 6.5e-08 32.5 0.0 1.3e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|312136660|ref|YP_004003997.1| - 1.9e-07 31.2 0.9 1.9e-06 27.9 0.0 2.7 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|312136660|ref|YP_004003997.1| - 5.1e-06 26.5 0.1 9.8e-05 22.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|312136660|ref|YP_004003997.1| - 1e-05 26.0 0.0 4.5e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|312136660|ref|YP_004003997.1| - 2.1e-05 24.8 0.2 6.2e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|312136660|ref|YP_004003997.1| - 5.2e-05 23.3 0.0 0.00016 21.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|312136660|ref|YP_004003997.1| - 0.00012 22.3 0.0 0.00029 21.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|312136660|ref|YP_004003997.1| - 0.00013 22.2 0.1 0.034 14.4 0.0 2.7 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|312136660|ref|YP_004003997.1| - 0.0013 18.7 2.3 0.008 16.1 2.0 2.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|312136660|ref|YP_004003997.1| - 0.0024 17.7 0.0 0.39 10.5 0.0 2.7 2 1 0 3 3 3 1 Bacterial dnaA protein RNA_helicase PF00910.22 gi|312136660|ref|YP_004003997.1| - 0.0041 17.5 0.1 0.014 15.7 0.0 2.1 2 0 0 2 2 1 1 RNA helicase AAA_18 PF13238.6 gi|312136660|ref|YP_004003997.1| - 0.0049 17.4 0.1 0.073 13.6 0.1 2.8 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|312136660|ref|YP_004003997.1| - 0.0063 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region NB-ARC PF00931.22 gi|312136660|ref|YP_004003997.1| - 0.0091 15.2 0.0 0.02 14.1 0.0 1.7 1 0 0 1 1 1 1 NB-ARC domain TniB PF05621.11 gi|312136660|ref|YP_004003997.1| - 0.0092 15.4 0.8 0.53 9.7 0.0 2.9 2 1 1 3 3 2 1 Bacterial TniB protein DUF815 PF05673.13 gi|312136660|ref|YP_004003997.1| - 0.013 14.7 0.0 0.026 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|312136660|ref|YP_004003997.1| - 0.018 14.8 0.0 0.046 13.4 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|312136660|ref|YP_004003997.1| - 0.026 14.6 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|312136660|ref|YP_004003997.1| - 0.033 13.9 0.2 0.18 11.6 0.2 2.0 1 1 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|312136660|ref|YP_004003997.1| - 0.034 14.6 0.5 0.13 12.8 0.4 2.3 1 1 0 1 1 1 0 ABC transporter DEAD PF00270.29 gi|312136660|ref|YP_004003997.1| - 0.036 13.8 0.5 8.7 6.1 0.1 2.6 1 1 1 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|312136660|ref|YP_004003997.1| - 0.083 12.8 0.1 0.29 11.0 0.0 1.9 1 1 1 2 2 2 0 NACHT domain DNA_pol3_delta2 PF13177.6 gi|312136660|ref|YP_004003997.1| - 0.084 12.7 0.0 0.42 10.4 0.0 2.2 2 2 0 2 2 2 0 DNA polymerase III, delta subunit ResIII PF04851.15 gi|312136660|ref|YP_004003997.1| - 0.085 12.9 0.0 0.85 9.6 0.0 2.4 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Roc PF08477.13 gi|312136660|ref|YP_004003997.1| - 0.12 12.6 0.1 0.46 10.7 0.0 2.1 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ThiI PF02568.14 gi|312136660|ref|YP_004003997.1| - 0.66 9.5 3.6 1.7 8.2 0.2 2.6 2 1 1 3 3 3 0 Thiamine biosynthesis protein (ThiI) L31 PF09784.9 gi|312136660|ref|YP_004003997.1| - 3.6 8.1 6.8 0.91 10.0 0.9 2.8 2 1 1 3 3 3 0 Mitochondrial ribosomal protein L31 Rep_fac_C PF08542.11 gi|312136661|ref|YP_004003998.1| - 1.4e-19 70.3 0.0 3.6e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|312136661|ref|YP_004003998.1| - 1.3e-17 64.4 0.3 3e-16 60.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|312136661|ref|YP_004003998.1| - 5.3e-16 58.8 0.0 1e-10 41.6 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|312136661|ref|YP_004003998.1| - 4.5e-08 33.2 0.0 1.1e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|312136661|ref|YP_004003998.1| - 2.9e-07 30.4 0.2 3.2e-06 27.0 0.2 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|312136661|ref|YP_004003998.1| - 4.2e-07 30.2 0.4 1.4e-06 28.5 0.4 1.9 1 1 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|312136661|ref|YP_004003998.1| - 4.3e-07 29.9 0.1 8.6e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|312136661|ref|YP_004003998.1| - 5.5e-07 30.1 0.4 0.00045 20.6 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|312136661|ref|YP_004003998.1| - 1.4e-06 28.3 0.0 5.4e-06 26.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|312136661|ref|YP_004003998.1| - 3.3e-06 26.6 0.0 0.0018 17.7 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|312136661|ref|YP_004003998.1| - 2.4e-05 24.4 0.0 9.1e-05 22.5 0.0 1.9 2 1 0 2 2 1 1 Type III restriction enzyme, res subunit TIP49 PF06068.13 gi|312136661|ref|YP_004003998.1| - 3.8e-05 23.1 0.2 0.00017 20.9 0.2 1.9 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|312136661|ref|YP_004003998.1| - 0.00018 22.1 0.0 0.00058 20.4 0.0 1.9 2 2 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|312136661|ref|YP_004003998.1| - 0.00025 20.8 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|312136661|ref|YP_004003998.1| - 0.00031 20.7 0.2 0.0057 16.7 0.2 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|312136661|ref|YP_004003998.1| - 0.00035 20.3 0.0 0.00084 19.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|312136661|ref|YP_004003998.1| - 0.00068 19.4 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|312136661|ref|YP_004003998.1| - 0.00077 19.6 0.0 0.0043 17.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) Cytidylate_kin PF02224.18 gi|312136661|ref|YP_004003998.1| - 0.0019 18.0 0.0 0.57 9.9 0.0 3.0 3 0 0 3 3 3 1 Cytidylate kinase AAA_22 PF13401.6 gi|312136661|ref|YP_004003998.1| - 0.0025 18.1 0.1 0.1 12.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|312136661|ref|YP_004003998.1| - 0.0028 17.3 0.0 0.0067 16.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|312136661|ref|YP_004003998.1| - 0.0032 17.4 0.0 0.0085 16.0 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase PhoH PF02562.16 gi|312136661|ref|YP_004003998.1| - 0.004 16.6 0.4 0.042 13.3 0.0 2.3 1 1 1 2 2 2 1 PhoH-like protein RNA_helicase PF00910.22 gi|312136661|ref|YP_004003998.1| - 0.0091 16.4 0.0 0.036 14.4 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_7 PF12775.7 gi|312136661|ref|YP_004003998.1| - 0.011 15.3 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_3 PF07726.11 gi|312136661|ref|YP_004003998.1| - 0.018 14.9 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3400 PF11880.8 gi|312136661|ref|YP_004003998.1| - 0.019 14.5 0.0 0.04 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) TPR_14 PF13428.6 gi|312136661|ref|YP_004003998.1| - 0.021 15.6 0.9 0.28 12.1 0.1 2.8 3 0 0 3 3 2 0 Tetratricopeptide repeat Sigma54_activ_2 PF14532.6 gi|312136661|ref|YP_004003998.1| - 0.057 13.5 0.0 0.26 11.4 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|312136661|ref|YP_004003998.1| - 0.06 12.5 0.0 0.095 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TPR_19 PF14559.6 gi|312136661|ref|YP_004003998.1| - 0.067 13.7 1.9 0.47 11.0 0.3 2.8 4 0 0 4 4 2 0 Tetratricopeptide repeat AAA_33 PF13671.6 gi|312136661|ref|YP_004003998.1| - 0.078 13.1 0.4 0.63 10.2 0.1 2.3 2 2 0 3 3 3 0 AAA domain TniB PF05621.11 gi|312136661|ref|YP_004003998.1| - 0.082 12.3 0.0 0.63 9.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein TPR_2 PF07719.17 gi|312136661|ref|YP_004003998.1| - 0.088 13.0 0.4 0.3 11.3 0.1 2.1 2 0 0 2 2 1 0 Tetratricopeptide repeat T2SSE PF00437.20 gi|312136661|ref|YP_004003998.1| - 0.088 11.8 0.0 0.23 10.5 0.0 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|312136661|ref|YP_004003998.1| - 0.11 12.6 0.1 1 9.4 0.0 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|312136661|ref|YP_004003998.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Lyase_1 PF00206.20 gi|312136662|ref|YP_004003999.1| - 5.4e-66 223.1 0.1 7.8e-66 222.6 0.1 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|312136662|ref|YP_004003999.1| - 2e-17 63.7 0.0 6.2e-17 62.1 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal PP-binding_2 PF14573.6 gi|312136662|ref|YP_004003999.1| - 0.066 13.5 0.1 0.46 10.8 0.0 2.4 2 0 0 2 2 2 0 Acyl-carrier RIH_assoc PF08454.11 gi|312136662|ref|YP_004003999.1| - 0.09 12.6 0.5 3.2 7.6 0.0 3.4 4 1 0 4 4 4 0 RyR and IP3R Homology associated Peptidase_M24 PF00557.24 gi|312136662|ref|YP_004003999.1| - 0.098 12.3 0.1 0.7 9.5 0.0 2.1 2 0 0 2 2 2 0 Metallopeptidase family M24 Phage_holin_6_1 PF09682.10 gi|312136662|ref|YP_004003999.1| - 3.2 8.2 9.4 17 5.9 0.5 2.9 2 1 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Ribosomal_S27 PF01599.19 gi|312136663|ref|YP_004004000.1| - 1.2e-18 67.0 3.5 1.4e-18 66.7 3.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|312136663|ref|YP_004004000.1| - 0.0059 16.7 3.0 0.0078 16.4 3.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e GFA PF04828.14 gi|312136663|ref|YP_004004000.1| - 0.016 15.6 1.0 0.59 10.5 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|312136663|ref|YP_004004000.1| - 0.021 14.6 3.5 1 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|312136663|ref|YP_004004000.1| - 0.045 13.7 5.9 0.2 11.6 5.1 2.2 2 1 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|312136663|ref|YP_004004000.1| - 0.046 13.7 3.0 0.078 13.0 3.0 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|312136663|ref|YP_004004000.1| - 0.082 12.6 0.5 0.082 12.6 0.5 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|312136663|ref|YP_004004000.1| - 0.11 12.0 2.2 0.17 11.5 2.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|312136663|ref|YP_004004000.1| - 0.47 10.4 6.4 4.9 7.1 6.4 2.1 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|312136663|ref|YP_004004000.1| - 0.54 9.8 2.9 3.3 7.3 0.2 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zf_UBZ PF18439.1 gi|312136663|ref|YP_004004000.1| - 0.58 9.8 2.2 12 5.6 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1 PF03811.13 gi|312136663|ref|YP_004004000.1| - 4.4 7.1 7.9 62 3.4 7.9 2.1 1 1 0 1 1 1 0 InsA N-terminal domain Ribosomal_S24e PF01282.19 gi|312136664|ref|YP_004004001.1| - 3.8e-26 90.9 0.1 5.3e-26 90.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|312136665|ref|YP_004004002.1| - 5.9e-38 129.4 0.3 7.3e-38 129.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) MAF_flag10 PF01973.18 gi|312136665|ref|YP_004004002.1| - 0.0021 17.8 0.4 0.0054 16.5 0.3 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF115 Spt4 PF06093.13 gi|312136666|ref|YP_004004003.1| - 5.3e-16 58.5 0.6 8.6e-16 57.8 0.6 1.3 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|312136666|ref|YP_004004003.1| - 0.004 16.7 3.1 0.0058 16.2 3.1 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|312136666|ref|YP_004004003.1| - 0.025 12.5 0.2 0.025 12.5 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Med27 PF11571.8 gi|312136666|ref|YP_004004003.1| - 0.053 13.9 0.6 0.053 13.9 0.6 1.2 1 0 0 1 1 1 0 Mediator complex subunit 27 Nop10p PF04135.12 gi|312136666|ref|YP_004004003.1| - 0.097 12.7 1.3 0.15 12.1 1.3 1.3 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.6 gi|312136666|ref|YP_004004003.1| - 0.69 9.4 5.8 0.33 10.4 0.6 2.1 1 1 0 2 2 2 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|312136666|ref|YP_004004003.1| - 4.6 6.8 8.0 1.6 8.3 4.5 2.1 2 1 0 2 2 2 0 Zinc-ribbon SHS2_Rpb7-N PF03876.17 gi|312136667|ref|YP_004004004.1| - 1.3e-18 67.1 0.0 2.4e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|312136667|ref|YP_004004004.1| - 4.1e-17 62.3 1.1 7.8e-17 61.4 1.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 gi|312136667|ref|YP_004004004.1| - 0.0067 16.5 0.1 0.39 10.8 0.0 3.0 2 1 0 2 2 2 1 S1 domain RNA_pol_Rbc25 PF08292.12 gi|312136667|ref|YP_004004004.1| - 0.055 13.7 1.7 0.12 12.7 1.7 1.7 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Pyrophosphatase PF00719.19 gi|312136668|ref|YP_004004005.1| - 2.9e-60 202.7 0.3 3.3e-60 202.5 0.3 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PIN_9 PF18477.1 gi|312136669|ref|YP_004004006.1| - 4.7e-14 52.7 1.7 5.5e-14 52.5 1.7 1.1 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|312136669|ref|YP_004004006.1| - 0.00025 21.4 0.1 0.00032 21.0 0.1 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|312136669|ref|YP_004004006.1| - 0.03 14.6 0.2 0.065 13.5 0.2 1.7 1 1 0 1 1 1 0 PIN domain SAF PF08666.12 gi|312136669|ref|YP_004004006.1| - 0.097 13.3 0.1 0.12 13.0 0.1 1.3 1 0 0 1 1 1 0 SAF domain PIN_9 PF18477.1 gi|312136670|ref|YP_004004007.1| - 3.1e-10 40.4 0.2 3.4e-10 40.2 0.2 1.0 1 0 0 1 1 1 1 PIN like domain eIF2_C PF09173.11 gi|312136671|ref|YP_004004008.1| - 7.5e-33 112.7 1.4 1.1e-32 112.1 0.2 2.0 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|312136671|ref|YP_004004008.1| - 5.1e-31 107.7 1.8 5.3e-30 104.4 1.8 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|312136671|ref|YP_004004008.1| - 1.1e-08 35.3 1.5 2.8e-08 34.0 0.4 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|312136671|ref|YP_004004008.1| - 0.00012 22.0 1.4 0.00085 19.3 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|312136671|ref|YP_004004008.1| - 0.0011 19.0 0.0 0.0039 17.3 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|312136671|ref|YP_004004008.1| - 0.0019 18.0 0.6 0.56 9.9 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|312136671|ref|YP_004004008.1| - 0.0053 15.8 0.9 0.011 14.8 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 gi|312136671|ref|YP_004004008.1| - 0.006 16.6 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Nop10p PF04135.12 gi|312136671|ref|YP_004004008.1| - 0.041 13.9 2.0 0.08 13.0 2.0 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.18 gi|312136671|ref|YP_004004008.1| - 0.057 12.9 0.6 3.5 7.2 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B NOB1_Zn_bind PF08772.11 gi|312136671|ref|YP_004004008.1| - 0.079 13.1 1.5 0.16 12.1 1.5 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S6e PF01092.19 gi|312136672|ref|YP_004004009.1| - 1.9e-44 150.6 0.7 2.2e-44 150.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU_D4 PF14578.6 gi|312136673|ref|YP_004004010.1| - 1.2e-34 118.1 3.7 1.2e-34 118.1 3.7 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|312136673|ref|YP_004004010.1| - 4.3e-34 117.7 0.1 5.8e-33 114.1 0.1 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|312136673|ref|YP_004004010.1| - 5.6e-23 81.1 4.5 5.6e-23 81.1 4.5 2.7 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|312136673|ref|YP_004004010.1| - 1.1e-09 38.6 13.1 1.8e-09 37.9 0.3 3.3 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|312136673|ref|YP_004004010.1| - 1.5e-07 31.4 1.6 8e-07 29.1 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|312136673|ref|YP_004004010.1| - 0.00022 21.1 0.0 0.00066 19.5 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|312136673|ref|YP_004004010.1| - 0.0044 17.1 0.1 0.22 11.5 0.0 3.2 2 1 0 3 3 3 1 Dynamin family Roc PF08477.13 gi|312136673|ref|YP_004004010.1| - 0.018 15.3 0.0 0.12 12.5 0.0 2.3 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ComZ PF10815.8 gi|312136673|ref|YP_004004010.1| - 0.052 13.5 0.4 3.8 7.6 0.0 3.3 3 0 0 3 3 3 0 ComZ NDK PF00334.19 gi|312136674|ref|YP_004004011.1| - 3.3e-62 208.5 0.3 3.7e-62 208.3 0.3 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|312136675|ref|YP_004004012.1| - 1.6e-20 73.1 4.8 1.6e-20 73.0 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|312136675|ref|YP_004004012.1| - 0.00049 20.1 0.8 0.00072 19.6 0.8 1.2 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|312136675|ref|YP_004004012.1| - 0.00096 19.4 0.8 0.0018 18.6 0.8 1.5 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FLZ PF04570.14 gi|312136675|ref|YP_004004012.1| - 0.065 12.7 1.7 0.11 12.0 1.7 1.4 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 zf-ribbon_3 PF13248.6 gi|312136675|ref|YP_004004012.1| - 0.11 12.0 2.0 0.16 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S28e PF01200.18 gi|312136676|ref|YP_004004013.1| - 5.7e-32 109.5 3.5 6.4e-32 109.3 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|312136677|ref|YP_004004014.1| - 1.5e-29 101.6 0.3 1.8e-29 101.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|312136677|ref|YP_004004014.1| - 0.0018 18.1 0.1 0.0025 17.7 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|312136677|ref|YP_004004014.1| - 0.0042 17.6 0.1 0.0049 17.3 0.1 1.2 1 1 0 1 1 1 1 eRF1 domain 3 Mrr_cat PF04471.12 gi|312136679|ref|YP_004004016.1| - 5.5e-08 32.8 0.1 8.4e-08 32.2 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease CoA_binding_2 PF13380.6 gi|312136679|ref|YP_004004016.1| - 0.0053 17.2 0.0 0.0094 16.4 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain FdhD-NarQ PF02634.15 gi|312136679|ref|YP_004004016.1| - 0.096 12.4 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 FdhD/NarQ family HIGH_NTase1_ass PF16581.5 gi|312136680|ref|YP_004004017.1| - 3.4e-95 317.8 6.8 4.6e-95 317.4 6.8 1.2 1 0 0 1 1 1 1 Cytidyltransferase-related C-terminal region HIGH_NTase1 PF05636.11 gi|312136680|ref|YP_004004017.1| - 5.3e-23 81.9 1.8 1.4e-13 50.9 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase HHH_3 PF12836.7 gi|312136680|ref|YP_004004017.1| - 0.0048 17.1 1.2 0.014 15.7 0.6 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif ATP-sulfurylase PF01747.17 gi|312136680|ref|YP_004004017.1| - 0.0056 16.2 0.0 0.037 13.5 0.0 2.0 2 0 0 2 2 2 1 ATP-sulfurylase CTP_transf_like PF01467.26 gi|312136680|ref|YP_004004017.1| - 0.034 14.4 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 Cytidylyltransferase-like Tim44 PF04280.15 gi|312136680|ref|YP_004004017.1| - 0.12 12.5 0.1 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 Tim44-like domain PsbU PF06514.11 gi|312136680|ref|YP_004004017.1| - 0.13 12.2 0.3 0.86 9.6 0.1 2.5 3 0 0 3 3 3 0 Photosystem II 12 kDa extrinsic protein (PsbU) FKBP26_C PF18046.1 gi|312136681|ref|YP_004004018.1| - 1e-26 92.8 4.1 1.3e-26 92.4 1.9 2.3 2 1 0 3 3 3 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|312136681|ref|YP_004004018.1| - 1.7e-16 60.3 0.0 3.1e-16 59.5 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase tRNA_bind_4 PF18490.1 gi|312136682|ref|YP_004004019.1| - 1.4e-53 181.0 4.8 2.2e-53 180.3 4.8 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|312136682|ref|YP_004004019.1| - 2.1e-11 44.1 0.0 6.1e-11 42.6 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Pcc1 PF09341.10 gi|312136683|ref|YP_004004020.1| - 0.007 16.5 0.0 0.0094 16.1 0.0 1.4 1 1 0 1 1 1 1 Transcription factor Pcc1 Tap-RNA_bind PF09162.10 gi|312136683|ref|YP_004004020.1| - 0.099 12.5 0.7 0.13 12.1 0.7 1.2 1 0 0 1 1 1 0 Tap, RNA-binding CbiA PF01656.23 gi|312136684|ref|YP_004004021.1| - 1.2e-24 86.8 0.2 1.6e-24 86.4 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|312136684|ref|YP_004004021.1| - 4.5e-11 43.0 4.2 1.7e-10 41.1 2.2 2.5 1 1 1 2 2 2 1 AAA domain ParA PF10609.9 gi|312136684|ref|YP_004004021.1| - 1.1e-10 41.4 3.3 5e-05 22.9 0.1 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|312136684|ref|YP_004004021.1| - 7.7e-08 32.1 0.0 0.00099 18.7 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|312136684|ref|YP_004004021.1| - 1.1e-07 31.7 4.3 0.0017 17.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|312136684|ref|YP_004004021.1| - 1.5e-07 30.9 0.7 2.4e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|312136684|ref|YP_004004021.1| - 2e-05 24.5 3.6 0.00019 21.3 0.5 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|312136684|ref|YP_004004021.1| - 0.00025 20.8 0.1 0.0014 18.4 0.1 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|312136684|ref|YP_004004021.1| - 0.00074 19.5 1.1 0.83 9.5 0.5 2.2 2 0 0 2 2 2 2 RsgA GTPase ABC_tran PF00005.27 gi|312136684|ref|YP_004004021.1| - 0.0044 17.5 0.4 0.011 16.2 0.4 1.9 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|312136684|ref|YP_004004021.1| - 0.0066 16.9 0.0 0.012 16.0 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|312136684|ref|YP_004004021.1| - 0.0091 15.9 2.1 0.016 15.1 0.1 2.1 2 0 0 2 2 2 1 NTPase Mur_ligase_M PF08245.12 gi|312136684|ref|YP_004004021.1| - 0.018 15.0 0.8 0.042 13.9 0.1 1.9 2 1 1 3 3 3 0 Mur ligase middle domain Methyltransf_32 PF13679.6 gi|312136684|ref|YP_004004021.1| - 0.023 14.7 0.0 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain CLP1_P PF16575.5 gi|312136684|ref|YP_004004021.1| - 0.025 14.4 0.1 0.17 11.6 0.1 2.1 2 1 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF1574 PF07611.11 gi|312136684|ref|YP_004004021.1| - 0.035 13.4 0.1 0.05 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1574) AAA_18 PF13238.6 gi|312136684|ref|YP_004004021.1| - 0.039 14.5 0.0 0.08 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|312136684|ref|YP_004004021.1| - 0.062 13.3 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|312136684|ref|YP_004004021.1| - 0.081 12.5 1.1 7.4 6.1 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|312136684|ref|YP_004004021.1| - 0.1 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|312136684|ref|YP_004004021.1| - 0.13 12.5 0.1 0.24 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|312136684|ref|YP_004004021.1| - 0.14 11.7 0.3 0.29 10.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|312136684|ref|YP_004004021.1| - 0.15 11.2 1.0 0.21 10.8 0.2 1.6 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|312136684|ref|YP_004004021.1| - 0.2 11.8 3.6 3.8 7.6 3.6 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|312136684|ref|YP_004004021.1| - 0.2 11.5 0.3 0.42 10.5 0.1 1.6 2 0 0 2 2 2 0 NACHT domain Usp PF00582.26 gi|312136685|ref|YP_004004022.1| - 3.3e-39 134.6 0.1 3.8e-39 134.4 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.22 gi|312136685|ref|YP_004004022.1| - 0.041 14.1 0.7 0.084 13.1 0.4 1.6 1 1 0 1 1 1 0 MGS-like domain Amidohydro_1 PF01979.20 gi|312136686|ref|YP_004004023.1| - 1.9e-43 149.1 0.0 2.2e-43 148.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|312136686|ref|YP_004004023.1| - 2.9e-08 33.6 0.0 0.0059 16.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family PI3_PI4_kinase PF00454.27 gi|312136686|ref|YP_004004023.1| - 0.052 13.4 0.1 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 Phosphatidylinositol 3- and 4-kinase EIF_2_alpha PF07541.12 gi|312136686|ref|YP_004004023.1| - 0.78 9.9 4.9 11 6.1 0.2 2.3 1 1 1 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit AAA_32 PF13654.6 gi|312136687|ref|YP_004004024.1| - 4.2e-17 62.1 0.1 4.5e-12 45.5 0.4 3.1 3 0 0 3 3 3 3 AAA domain Mg_chelatase PF01078.21 gi|312136687|ref|YP_004004024.1| - 5.2e-15 55.4 0.0 3.1e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|312136687|ref|YP_004004024.1| - 9.2e-11 41.7 0.0 1.6e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|312136687|ref|YP_004004024.1| - 1.1e-07 31.9 0.0 0.0011 19.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|312136687|ref|YP_004004024.1| - 1.7e-07 31.8 0.0 0.0028 18.1 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|312136687|ref|YP_004004024.1| - 2.4e-05 23.5 0.0 0.036 13.2 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain RuvB_N PF05496.12 gi|312136687|ref|YP_004004024.1| - 2.6e-05 24.0 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|312136687|ref|YP_004004024.1| - 3.8e-05 24.0 0.0 0.04 14.2 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|312136687|ref|YP_004004024.1| - 0.00045 20.6 0.0 0.0024 18.3 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activ_2 PF14532.6 gi|312136687|ref|YP_004004024.1| - 0.0021 18.2 0.0 0.051 13.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|312136687|ref|YP_004004024.1| - 0.0023 17.5 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|312136687|ref|YP_004004024.1| - 0.0023 17.7 0.0 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein MCM_lid PF17855.1 gi|312136687|ref|YP_004004024.1| - 0.004 17.6 1.0 0.0095 16.3 0.4 1.9 2 0 0 2 2 1 1 MCM AAA-lid domain ABC_tran PF00005.27 gi|312136687|ref|YP_004004024.1| - 0.0063 17.0 0.0 0.014 15.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.6 gi|312136687|ref|YP_004004024.1| - 0.0064 16.5 0.0 2.8 8.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|312136687|ref|YP_004004024.1| - 0.0067 15.9 0.4 0.12 11.7 0.0 2.7 3 0 0 3 3 3 1 Bacterial TniB protein AAA_19 PF13245.6 gi|312136687|ref|YP_004004024.1| - 0.0074 16.6 0.0 2.5 8.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|312136687|ref|YP_004004024.1| - 0.0091 15.1 0.0 0.023 13.8 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein DZR PF12773.7 gi|312136687|ref|YP_004004024.1| - 0.02 14.9 0.4 0.034 14.2 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Mg_chelatase_C PF13335.6 gi|312136687|ref|YP_004004024.1| - 0.023 15.3 0.8 0.049 14.3 0.8 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_2 PF07724.14 gi|312136687|ref|YP_004004024.1| - 0.034 14.3 0.0 11 6.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) zf-ribbon_3 PF13248.6 gi|312136687|ref|YP_004004024.1| - 0.044 13.2 2.4 0.081 12.4 2.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TIP49 PF06068.13 gi|312136687|ref|YP_004004024.1| - 0.053 12.7 0.0 0.84 8.8 0.0 2.4 2 0 0 2 2 2 0 TIP49 P-loop domain HypA PF01155.19 gi|312136687|ref|YP_004004024.1| - 0.058 13.4 0.3 0.12 12.4 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rad17 PF03215.15 gi|312136687|ref|YP_004004024.1| - 0.058 13.3 0.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain DUF2072 PF09845.9 gi|312136687|ref|YP_004004024.1| - 0.076 13.3 1.1 0.13 12.5 0.2 1.9 2 0 0 2 2 2 0 Zn-ribbon containing protein Parvo_NS1 PF01057.17 gi|312136687|ref|YP_004004024.1| - 0.15 11.1 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 zinc_ribbon_2 PF13240.6 gi|312136687|ref|YP_004004024.1| - 0.84 9.4 3.2 1.6 8.6 3.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Toprim_4 PF13662.6 gi|312136688|ref|YP_004004025.1| - 4.8e-12 46.2 3.2 5.7e-12 46.0 0.7 2.4 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|312136688|ref|YP_004004025.1| - 7e-07 29.6 0.0 2e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|312136688|ref|YP_004004025.1| - 0.0029 17.8 0.3 0.0029 17.8 0.3 3.1 2 2 0 2 2 2 1 Toprim domain Toprim PF01751.22 gi|312136689|ref|YP_004004026.1| - 9.7e-05 22.5 0.2 0.00019 21.6 0.2 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|312136689|ref|YP_004004026.1| - 0.00063 20.2 0.1 0.0014 19.1 0.1 1.5 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|312136689|ref|YP_004004026.1| - 0.00075 19.9 0.0 0.0012 19.3 0.0 1.4 1 0 0 1 1 1 1 Toprim-like HEM4 PF02602.15 gi|312136689|ref|YP_004004026.1| - 0.06 12.7 0.0 0.07 12.5 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Glyco_trans_4_5 PF16994.5 gi|312136689|ref|YP_004004026.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl-transferase family 4 RraA-like PF03737.15 gi|312136690|ref|YP_004004027.1| - 1.1e-36 126.2 0.2 1.4e-36 125.9 0.2 1.1 1 0 0 1 1 1 1 Aldolase/RraA Xpo1 PF08389.12 gi|312136690|ref|YP_004004027.1| - 0.17 11.9 0.3 0.97 9.5 0.2 1.9 2 0 0 2 2 2 0 Exportin 1-like protein TauE PF01925.19 gi|312136691|ref|YP_004004028.1| - 1.1e-42 146.3 36.0 1.4e-42 146.0 36.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0016 PF01169.19 gi|312136691|ref|YP_004004028.1| - 0.093 13.1 0.2 0.093 13.1 0.2 3.6 3 2 1 4 4 4 0 Uncharacterized protein family UPF0016 Glyco_trans_1_3 PF13528.6 gi|312136693|ref|YP_004004030.1| - 3.2e-105 351.9 0.1 7e-105 350.8 0.0 1.5 1 1 1 2 2 2 1 Glycosyl transferase family 1 Glycos_transf_2 PF00535.26 gi|312136693|ref|YP_004004030.1| - 6.1e-31 107.5 0.0 1.7e-30 106.0 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312136693|ref|YP_004004030.1| - 7.3e-14 52.2 0.0 1.5e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|312136693|ref|YP_004004030.1| - 2.9e-11 43.4 0.1 2.6e-09 37.0 0.1 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tran_28_C PF04101.16 gi|312136693|ref|YP_004004030.1| - 8.9e-08 32.3 0.0 2e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_21 PF13506.6 gi|312136693|ref|YP_004004030.1| - 0.00011 21.7 0.0 0.00026 20.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|312136693|ref|YP_004004030.1| - 0.0011 19.4 0.0 0.0098 16.4 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|312136693|ref|YP_004004030.1| - 0.026 14.4 0.0 0.063 13.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Mito_fiss_Elm1 PF06258.11 gi|312136693|ref|YP_004004030.1| - 0.045 12.9 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial fission ELM1 KaiA PF07688.12 gi|312136693|ref|YP_004004030.1| - 0.3 11.2 4.1 0.31 11.2 0.3 2.7 3 0 0 3 3 3 0 KaiA C-terminal domain TFIIB PF00382.19 gi|312136694|ref|YP_004004031.1| - 3.2e-44 148.8 3.0 7e-22 77.3 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|312136694|ref|YP_004004031.1| - 5.1e-18 64.3 1.2 5.1e-18 64.3 1.2 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|312136694|ref|YP_004004031.1| - 3.4e-06 26.5 2.2 0.0064 16.0 0.9 3.8 3 0 0 3 3 3 1 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|312136694|ref|YP_004004031.1| - 0.00075 19.8 0.6 0.02 15.3 0.2 2.3 2 0 0 2 2 2 1 Restriction alleviation protein Lar Sigma70_r4_2 PF08281.12 gi|312136694|ref|YP_004004031.1| - 0.0013 18.4 1.2 0.058 13.1 0.1 3.1 4 0 0 4 4 2 1 Sigma-70, region 4 GerE PF00196.19 gi|312136694|ref|YP_004004031.1| - 0.003 17.1 0.1 0.15 11.6 0.0 2.8 3 0 0 3 3 2 1 Bacterial regulatory proteins, luxR family DUF2387 PF09526.10 gi|312136694|ref|YP_004004031.1| - 0.0036 17.4 0.3 0.0094 16.1 0.3 1.8 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) HTH_Crp_2 PF13545.6 gi|312136694|ref|YP_004004031.1| - 0.0053 16.7 1.1 6.3 6.9 0.1 3.5 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Ribosomal_S27e PF01667.17 gi|312136694|ref|YP_004004031.1| - 0.011 15.4 0.3 0.011 15.4 0.3 1.7 2 0 0 2 2 1 0 Ribosomal protein S27 RPA_interact_C PF14768.6 gi|312136694|ref|YP_004004031.1| - 0.014 16.0 0.2 0.62 10.7 0.0 2.3 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Cyclin_C PF02984.19 gi|312136694|ref|YP_004004031.1| - 0.014 15.5 0.0 1.5 9.0 0.0 2.3 1 1 1 2 2 2 0 Cyclin, C-terminal domain HTH_23 PF13384.6 gi|312136694|ref|YP_004004031.1| - 0.014 15.2 1.0 0.098 12.5 0.4 2.8 3 0 0 3 3 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|312136694|ref|YP_004004031.1| - 0.016 15.0 1.1 0.016 15.0 1.1 2.8 4 1 1 5 5 2 0 AsnC-type helix-turn-helix domain RB_B PF01857.20 gi|312136694|ref|YP_004004031.1| - 0.02 14.9 0.0 0.046 13.8 0.0 1.5 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain OrfB_Zn_ribbon PF07282.11 gi|312136694|ref|YP_004004031.1| - 0.037 13.9 0.6 0.12 12.3 0.6 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_3 PF01381.22 gi|312136694|ref|YP_004004031.1| - 0.042 13.9 0.4 1.5 8.9 0.1 3.2 3 1 1 4 4 3 0 Helix-turn-helix UPF0181 PF03701.14 gi|312136694|ref|YP_004004031.1| - 0.043 13.4 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Cyclin_N PF00134.23 gi|312136694|ref|YP_004004031.1| - 0.05 13.4 0.0 3.3 7.5 0.0 2.2 2 0 0 2 2 2 0 Cyclin, N-terminal domain DZR PF12773.7 gi|312136694|ref|YP_004004031.1| - 0.057 13.5 0.6 0.29 11.2 0.2 2.0 2 0 0 2 2 2 0 Double zinc ribbon TrmB PF01978.19 gi|312136694|ref|YP_004004031.1| - 0.061 13.2 1.9 16 5.5 0.0 3.4 4 0 0 4 4 3 0 Sugar-specific transcriptional regulator TrmB HARE-HTH PF05066.13 gi|312136694|ref|YP_004004031.1| - 0.075 13.4 0.1 17 5.9 0.0 2.7 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain UPF0253 PF06786.12 gi|312136694|ref|YP_004004031.1| - 0.1 12.9 0.0 0.71 10.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Trp_repressor PF01371.19 gi|312136694|ref|YP_004004031.1| - 0.11 12.6 1.2 0.72 10.0 0.2 2.5 2 1 0 2 2 2 0 Trp repressor protein HTH_11 PF08279.12 gi|312136694|ref|YP_004004031.1| - 0.12 12.4 0.9 1.3 9.0 0.3 2.7 3 0 0 3 3 3 0 HTH domain DUF2318 PF10080.9 gi|312136694|ref|YP_004004031.1| - 0.13 12.4 0.5 2.6 8.2 0.2 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) HTH_24 PF13412.6 gi|312136694|ref|YP_004004031.1| - 0.13 11.8 2.7 0.4 10.3 0.3 3.0 4 1 1 5 5 3 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|312136694|ref|YP_004004031.1| - 0.18 11.7 2.0 6.2 6.7 0.1 3.8 4 0 0 4 4 4 0 HTH DNA binding domain TFIIB_C_1 PF18542.1 gi|312136694|ref|YP_004004031.1| - 0.27 11.3 2.2 0.87 9.7 0.2 2.3 2 1 0 2 2 2 0 Transcription factor IIB C-terminal module 1 Auto_anti-p27 PF06677.12 gi|312136694|ref|YP_004004031.1| - 0.35 11.1 2.0 4.7 7.5 0.8 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SR1P PF13790.6 gi|312136694|ref|YP_004004031.1| - 0.8 9.9 5.6 3 8.0 0.3 2.8 3 0 0 3 3 2 0 SR1 protein Baculo_LEF5_C PF11792.8 gi|312136694|ref|YP_004004031.1| - 0.87 9.3 2.7 3.6 7.4 0.2 2.6 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain Zn-ribbon_8 PF09723.10 gi|312136694|ref|YP_004004031.1| - 1.2 9.4 5.1 5.2 7.3 3.1 2.7 2 1 1 3 3 3 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|312136694|ref|YP_004004031.1| - 1.3 9.0 3.4 13 5.7 0.8 3.0 2 1 1 3 3 3 0 Domain found in IF2B/IF5 PhnA_Zn_Ribbon PF08274.12 gi|312136694|ref|YP_004004031.1| - 1.6 8.7 4.3 0.61 10.1 1.1 1.9 2 0 0 2 2 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|312136694|ref|YP_004004031.1| - 1.6 8.7 4.3 0.88 9.6 1.1 2.2 2 1 0 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|312136694|ref|YP_004004031.1| - 2 8.2 5.4 0.69 9.7 1.1 2.3 2 1 0 2 2 2 0 A2L zinc ribbon domain Gar1 PF04410.14 gi|312136695|ref|YP_004004032.1| - 3.7e-08 33.3 0.1 4.1e-08 33.1 0.1 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|312136695|ref|YP_004004032.1| - 0.045 13.8 0.2 0.078 13.1 0.0 1.7 2 1 0 2 2 2 0 PRC-barrel domain DUF2145 PF09916.9 gi|312136695|ref|YP_004004032.1| - 0.17 11.6 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2145) NMD3 PF04981.13 gi|312136696|ref|YP_004004033.1| - 3.8e-51 173.9 9.9 5.4e-51 173.4 9.9 1.2 1 0 0 1 1 1 1 NMD3 family Multi-haem_cyto PF13447.6 gi|312136696|ref|YP_004004033.1| - 0.028 13.7 1.5 0.044 13.0 1.5 1.3 1 0 0 1 1 1 0 Seven times multi-haem cytochrome CxxCH DUF2797 PF10977.8 gi|312136696|ref|YP_004004033.1| - 0.058 13.3 10.8 3.4 7.5 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2797) A2L_zn_ribbon PF08792.10 gi|312136696|ref|YP_004004033.1| - 0.11 12.3 4.5 0.95 9.3 0.6 3.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C4pol PF14260.6 gi|312136696|ref|YP_004004033.1| - 0.65 10.5 9.5 9.1 6.8 0.3 3.3 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.7 gi|312136696|ref|YP_004004033.1| - 1.1 9.3 8.7 1.6 8.9 3.4 2.5 2 1 0 2 2 2 0 Double zinc ribbon tRNA-synt_1b PF00579.25 gi|312136697|ref|YP_004004034.1| - 2.6e-49 168.1 0.0 3e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|312136697|ref|YP_004004034.1| - 2.3e-05 23.5 0.1 0.017 14.0 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (K) UPF0242 PF06785.11 gi|312136698|ref|YP_004004035.1| - 0.00024 21.3 3.1 0.00037 20.7 3.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|312136698|ref|YP_004004035.1| - 0.011 14.8 8.9 0.013 14.6 8.9 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4398 PF14346.6 gi|312136698|ref|YP_004004035.1| - 0.024 15.3 0.1 0.032 14.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Sec8_exocyst PF04048.14 gi|312136698|ref|YP_004004035.1| - 0.036 13.9 2.1 0.036 13.9 2.1 1.7 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain TPR_MLP1_2 PF07926.12 gi|312136698|ref|YP_004004035.1| - 0.044 13.8 6.4 2.5 8.2 0.3 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein HALZ PF02183.18 gi|312136698|ref|YP_004004035.1| - 0.045 14.0 3.5 0.12 12.7 2.2 2.3 1 1 1 2 2 2 0 Homeobox associated leucine zipper Fmp27_WPPW PF10359.9 gi|312136698|ref|YP_004004035.1| - 0.052 12.4 3.8 0.058 12.2 3.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CBM39 PF15886.5 gi|312136698|ref|YP_004004035.1| - 0.091 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain (family 32) YabA PF06156.13 gi|312136698|ref|YP_004004035.1| - 0.17 12.6 5.3 0.59 10.8 5.0 1.9 1 1 0 1 1 1 0 Initiation control protein YabA Mt_ATP-synt_D PF05873.12 gi|312136698|ref|YP_004004035.1| - 0.18 11.6 3.5 0.23 11.3 3.5 1.3 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) ZapB PF06005.12 gi|312136698|ref|YP_004004035.1| - 0.32 11.4 8.6 23 5.5 8.6 2.2 1 1 0 1 1 1 0 Cell division protein ZapB DUF1664 PF07889.12 gi|312136698|ref|YP_004004035.1| - 0.46 10.5 4.9 0.9 9.6 4.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) BST2 PF16716.5 gi|312136698|ref|YP_004004035.1| - 0.61 10.7 5.6 0.62 10.7 2.0 2.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Swi5 PF07061.11 gi|312136698|ref|YP_004004035.1| - 0.65 10.1 6.6 46 4.2 6.6 2.2 1 1 0 1 1 1 0 Swi5 DivIC PF04977.15 gi|312136698|ref|YP_004004035.1| - 0.8 9.5 10.3 0.85 9.4 0.5 2.4 1 1 0 2 2 2 0 Septum formation initiator DUF3450 PF11932.8 gi|312136698|ref|YP_004004035.1| - 1.8 7.8 7.5 0.34 10.2 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FtsJ PF01728.19 gi|312136699|ref|YP_004004036.1| - 1.3e-59 201.2 0.0 1.5e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|312136699|ref|YP_004004036.1| - 8.8e-12 45.1 0.1 5.2e-11 42.6 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|312136699|ref|YP_004004036.1| - 8.1e-05 22.4 0.1 0.0007 19.3 0.1 2.1 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|312136699|ref|YP_004004036.1| - 9.6e-05 22.3 0.0 0.0002 21.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312136699|ref|YP_004004036.1| - 0.00051 20.7 0.0 0.0021 18.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312136699|ref|YP_004004036.1| - 0.001 18.5 0.2 0.0054 16.1 0.2 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CmcI PF04989.12 gi|312136699|ref|YP_004004036.1| - 0.0013 18.5 0.1 0.0016 18.2 0.1 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase TrkA_N PF02254.18 gi|312136699|ref|YP_004004036.1| - 0.027 14.7 0.0 0.067 13.5 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain MTS PF05175.14 gi|312136699|ref|YP_004004036.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|312136699|ref|YP_004004036.1| - 0.042 13.6 0.2 0.13 11.9 0.2 1.9 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) LMSTEN PF07988.12 gi|312136699|ref|YP_004004036.1| - 0.13 11.8 0.3 0.27 10.7 0.3 1.5 1 0 0 1 1 1 0 LMSTEN motif Metallophos_2 PF12850.7 gi|312136700|ref|YP_004004037.1| - 8.8e-31 107.3 0.0 1e-30 107.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|312136700|ref|YP_004004037.1| - 1.6e-06 28.8 0.1 0.0037 17.8 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase FeoA PF04023.14 gi|312136701|ref|YP_004004038.1| - 8.7e-18 64.4 1.2 9.8e-18 64.2 1.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|312136702|ref|YP_004004039.1| - 6.1e-58 194.8 0.9 9.8e-58 194.1 0.9 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|312136702|ref|YP_004004039.1| - 1.4e-27 96.2 19.4 1.3e-13 51.2 7.9 2.8 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|312136702|ref|YP_004004039.1| - 6.9e-18 64.8 0.1 1.2e-17 64.0 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|312136702|ref|YP_004004039.1| - 2.4e-10 40.0 1.2 2.4e-10 40.0 1.2 3.6 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|312136702|ref|YP_004004039.1| - 1.5e-05 24.4 0.1 3.9e-05 23.1 0.1 1.6 2 0 0 2 2 2 1 AIG1 family SRPRB PF09439.10 gi|312136702|ref|YP_004004039.1| - 2.3e-05 23.9 0.0 3.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|312136702|ref|YP_004004039.1| - 0.005 16.4 0.2 0.014 15.0 0.2 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|312136702|ref|YP_004004039.1| - 0.0062 16.1 0.1 0.029 13.9 0.1 2.0 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|312136702|ref|YP_004004039.1| - 0.014 15.2 0.2 0.063 13.0 0.0 2.0 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|312136702|ref|YP_004004039.1| - 0.022 14.2 0.1 0.1 12.1 0.1 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|312136702|ref|YP_004004039.1| - 0.049 13.5 0.8 0.2 11.6 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase Roc PF08477.13 gi|312136702|ref|YP_004004039.1| - 0.07 13.3 0.0 0.22 11.7 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase T2SSF PF00482.23 gi|312136703|ref|YP_004004040.1| - 9.4e-24 83.8 1.7 9.4e-24 83.8 1.7 3.0 2 1 1 3 3 3 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|312136703|ref|YP_004004040.1| - 3.3e-05 22.9 3.0 0.058 12.2 0.1 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) CitMHS PF03600.16 gi|312136703|ref|YP_004004040.1| - 0.06 12.5 4.7 4.9 6.2 0.0 2.1 2 0 0 2 2 2 0 Citrate transporter DUF1700 PF08006.11 gi|312136703|ref|YP_004004040.1| - 0.066 12.8 6.4 2.6 7.6 4.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) OAD_gamma PF04277.13 gi|312136703|ref|YP_004004040.1| - 0.068 13.8 0.8 0.068 13.8 0.8 3.8 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain FA_desaturase PF00487.24 gi|312136703|ref|YP_004004040.1| - 0.22 11.3 0.2 19 5.0 0.0 2.2 2 0 0 2 2 2 0 Fatty acid desaturase Phage_holin_3_6 PF07332.11 gi|312136703|ref|YP_004004040.1| - 2.5 8.2 6.8 1.6 8.8 0.5 2.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III T2SSE PF00437.20 gi|312136704|ref|YP_004004041.1| - 5.9e-62 209.2 0.0 9.8e-62 208.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|312136704|ref|YP_004004041.1| - 0.0014 17.9 0.0 0.003 16.9 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin FtsK_SpoIIIE PF01580.18 gi|312136704|ref|YP_004004041.1| - 0.041 13.2 0.1 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family GCK PF07802.11 gi|312136705|ref|YP_004004042.1| - 0.18 12.2 0.0 0.34 11.4 0.0 1.4 1 0 0 1 1 1 0 GCK domain QueC PF06508.13 gi|312136706|ref|YP_004004043.1| - 3.4e-09 36.5 0.2 9.2e-09 35.1 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|312136706|ref|YP_004004043.1| - 6.4e-08 32.3 1.9 6.1e-07 29.1 0.1 2.1 1 1 1 2 2 2 1 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|312136706|ref|YP_004004043.1| - 1.3e-06 28.3 0.2 4.4e-05 23.3 0.0 2.4 1 1 0 2 2 2 1 PP-loop family Asn_synthase PF00733.21 gi|312136706|ref|YP_004004043.1| - 6.9e-06 26.0 0.0 1.8e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|312136706|ref|YP_004004043.1| - 0.00012 21.3 0.1 0.00051 19.2 0.0 1.9 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.16 gi|312136706|ref|YP_004004043.1| - 0.0012 17.7 0.9 0.002 17.0 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|312136706|ref|YP_004004043.1| - 0.0024 17.9 0.4 0.0063 16.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Spermine_synth PF01564.17 gi|312136706|ref|YP_004004043.1| - 0.017 14.5 2.5 0.038 13.4 0.4 2.4 3 1 0 3 3 3 0 Spermine/spermidine synthase domain DUF1957 PF09210.11 gi|312136706|ref|YP_004004043.1| - 0.02 15.3 0.4 0.078 13.4 0.4 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) YcaO PF02624.16 gi|312136707|ref|YP_004004044.1| - 1.8e-93 313.4 0.0 2.2e-93 313.1 0.0 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding PduV-EutP PF10662.9 gi|312136707|ref|YP_004004044.1| - 0.0025 17.6 0.3 1.1 9.1 0.0 2.7 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation CPSase_L_D3 PF02787.19 gi|312136707|ref|YP_004004044.1| - 0.068 13.5 0.5 0.88 9.9 0.0 2.7 3 0 0 3 3 3 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Peptidase_M50 PF02163.22 gi|312136708|ref|YP_004004045.1| - 1.2e-06 28.0 15.4 8.5e-05 21.9 0.5 3.4 1 1 1 2 2 2 2 Peptidase family M50 DUF308 PF03729.13 gi|312136708|ref|YP_004004045.1| - 5.3 7.4 27.5 0.32 11.4 2.1 3.4 2 1 1 3 3 3 0 Short repeat of unknown function (DUF308) PhoU PF01895.19 gi|312136709|ref|YP_004004046.1| - 4.8e-29 100.7 10.9 5.2e-17 62.1 0.2 2.3 2 0 0 2 2 2 2 PhoU domain HTH_24 PF13412.6 gi|312136709|ref|YP_004004046.1| - 2.3e-08 33.5 0.8 2.2e-07 30.3 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|312136709|ref|YP_004004046.1| - 4.8e-07 29.6 1.2 4e-05 23.4 0.2 2.7 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|312136709|ref|YP_004004046.1| - 5.2e-05 23.1 0.1 0.00019 21.3 0.1 2.0 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.7 gi|312136709|ref|YP_004004046.1| - 5.3e-05 23.0 0.0 0.00014 21.7 0.0 1.7 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|312136709|ref|YP_004004046.1| - 8.1e-05 22.9 0.2 0.00025 21.3 0.2 1.9 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|312136709|ref|YP_004004046.1| - 0.00025 21.0 0.0 0.00092 19.1 0.0 2.0 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|312136709|ref|YP_004004046.1| - 0.00092 19.1 0.2 0.0033 17.3 0.2 2.0 2 0 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.16 gi|312136709|ref|YP_004004046.1| - 0.0013 18.2 0.0 0.0051 16.3 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|312136709|ref|YP_004004046.1| - 0.0033 17.4 0.2 0.014 15.5 0.2 2.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|312136709|ref|YP_004004046.1| - 0.0057 16.4 0.0 0.019 14.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.7 gi|312136709|ref|YP_004004046.1| - 0.0097 15.9 2.7 0.29 11.2 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1664 PF07889.12 gi|312136709|ref|YP_004004046.1| - 0.029 14.4 3.2 0.29 11.2 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) MCM_N PF14551.6 gi|312136709|ref|YP_004004046.1| - 0.032 14.8 4.5 2.9 8.5 0.3 2.4 2 0 0 2 2 2 0 MCM N-terminal domain HTH_36 PF13730.6 gi|312136709|ref|YP_004004046.1| - 0.046 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|312136709|ref|YP_004004046.1| - 0.069 13.3 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|312136709|ref|YP_004004046.1| - 0.07 12.9 0.0 1.1 9.1 0.0 2.8 2 0 0 2 2 2 0 HTH DNA binding domain KorB PF08535.10 gi|312136709|ref|YP_004004046.1| - 0.086 12.9 0.0 0.21 11.7 0.0 1.8 1 0 0 1 1 1 0 KorB domain LexA_DNA_bind PF01726.16 gi|312136709|ref|YP_004004046.1| - 0.095 12.5 0.0 0.39 10.5 0.0 2.0 1 0 0 1 1 1 0 LexA DNA binding domain TFIIE_alpha PF02002.17 gi|312136709|ref|YP_004004046.1| - 0.1 12.5 5.1 0.16 11.9 0.1 3.0 3 0 0 3 3 3 0 TFIIE alpha subunit HTH_29 PF13551.6 gi|312136709|ref|YP_004004046.1| - 0.14 12.2 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.15 gi|312136709|ref|YP_004004046.1| - 0.14 12.2 0.7 0.4 10.8 0.2 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase FaeA PF04703.12 gi|312136709|ref|YP_004004046.1| - 0.15 12.5 0.1 0.38 11.1 0.1 1.7 1 0 0 1 1 1 0 FaeA-like protein PCI PF01399.27 gi|312136709|ref|YP_004004046.1| - 0.21 12.1 0.1 0.21 12.1 0.1 2.6 3 0 0 3 3 3 0 PCI domain HTH_45 PF14947.6 gi|312136709|ref|YP_004004046.1| - 0.22 11.5 5.2 0.57 10.2 0.6 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix RGS PF00615.19 gi|312136709|ref|YP_004004046.1| - 3.2 8.0 7.9 0.38 11.1 0.7 2.5 2 1 0 2 2 2 0 Regulator of G protein signaling domain CrgA PF06781.12 gi|312136710|ref|YP_004004047.1| - 0.011 15.8 0.2 0.011 15.8 0.2 2.4 3 0 0 3 3 3 0 Cell division protein CrgA Colicin_V PF02674.16 gi|312136710|ref|YP_004004047.1| - 0.019 14.9 9.9 0.58 10.1 2.8 2.4 2 0 0 2 2 2 0 Colicin V production protein FtsX PF02687.21 gi|312136710|ref|YP_004004047.1| - 4.6 7.8 12.7 1.5e+03 -0.2 12.7 2.4 1 1 0 1 1 1 0 FtsX-like permease family Metallophos PF00149.28 gi|312136711|ref|YP_004004048.1| - 2e-14 54.6 4.5 3e-14 54.0 4.5 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|312136711|ref|YP_004004048.1| - 8.7e-13 48.8 1.0 2.6e-12 47.2 0.9 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|312136711|ref|YP_004004048.1| - 0.036 13.4 0.1 0.42 9.9 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily MutL PF13941.6 gi|312136711|ref|YP_004004048.1| - 0.17 10.5 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 MutL protein Aminotran_5 PF00266.19 gi|312136712|ref|YP_004004049.1| - 4.9e-48 163.9 0.1 6.2e-48 163.6 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|312136712|ref|YP_004004049.1| - 4.1e-05 22.3 0.1 6.9e-05 21.5 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|312136712|ref|YP_004004049.1| - 0.0016 17.7 0.1 0.031 13.5 0.2 2.3 2 1 0 2 2 2 1 Aminotransferase class I and II MAF_flag10 PF01973.18 gi|312136713|ref|YP_004004050.1| - 4.4e-42 143.7 1.0 6e-42 143.3 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|312136713|ref|YP_004004050.1| - 0.00028 20.9 0.0 0.00043 20.3 0.0 1.4 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain CST-I PF06002.12 gi|312136713|ref|YP_004004050.1| - 0.0069 16.2 0.1 0.032 14.0 0.0 2.0 2 0 0 2 2 2 1 Alpha-2,3-sialyltransferase (CST-I) CENP-L PF13092.6 gi|312136713|ref|YP_004004050.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Kinetochore complex Sim4 subunit Fta1 Archease PF01951.16 gi|312136714|ref|YP_004004051.1| - 1.9e-44 151.2 2.4 2.2e-44 151.1 2.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|312136715|ref|YP_004004052.1| - 1.7e-176 587.5 0.3 2e-176 587.2 0.3 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB PNP_UDP_1 PF01048.20 gi|312136716|ref|YP_004004053.1| - 9.2e-47 159.2 0.0 1e-46 159.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily YbjQ_1 PF01906.17 gi|312136717|ref|YP_004004054.1| - 1e-35 122.5 1.2 1.5e-35 122.0 1.2 1.2 1 0 0 1 1 1 1 Putative heavy-metal-binding zinc_ribbon_2 PF13240.6 gi|312136717|ref|YP_004004054.1| - 1.6e-07 30.8 6.8 2.6e-07 30.1 6.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|312136717|ref|YP_004004054.1| - 2.1e-06 27.6 1.0 3.4e-06 27.0 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|312136717|ref|YP_004004054.1| - 1.9e-05 23.9 3.1 3.2e-05 23.2 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain ADK_lid PF05191.14 gi|312136717|ref|YP_004004054.1| - 0.00015 21.6 3.7 0.00026 20.9 3.7 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid eRF1_3 PF03465.15 gi|312136717|ref|YP_004004054.1| - 0.00046 20.6 0.6 0.2 12.2 0.0 2.6 2 1 0 2 2 2 1 eRF1 domain 3 Nudix_N_2 PF14803.6 gi|312136717|ref|YP_004004054.1| - 0.0015 18.4 2.3 0.59 10.1 0.0 2.4 2 0 0 2 2 2 2 Nudix N-terminal SeleniumBinding PF11524.8 gi|312136717|ref|YP_004004054.1| - 0.0053 17.2 0.9 0.15 12.5 0.1 2.4 2 1 0 2 2 2 1 Selenium binding protein Cas6 PF09559.10 gi|312136717|ref|YP_004004054.1| - 0.0069 16.4 0.0 0.015 15.3 0.0 1.5 2 0 0 2 2 2 1 Cas6 Crispr TF_Zn_Ribbon PF08271.12 gi|312136717|ref|YP_004004054.1| - 0.0081 15.7 1.7 0.019 14.5 1.7 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|312136717|ref|YP_004004054.1| - 0.013 16.2 4.2 0.023 15.4 4.2 1.4 1 0 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|312136717|ref|YP_004004054.1| - 0.014 15.4 1.0 0.022 14.7 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbons NMD3 PF04981.13 gi|312136717|ref|YP_004004054.1| - 0.022 14.2 2.0 1.2 8.6 1.1 2.5 2 1 0 2 2 2 0 NMD3 family NOB1_Zn_bind PF08772.11 gi|312136717|ref|YP_004004054.1| - 0.025 14.7 2.6 0.064 13.4 2.6 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Hjc PF01870.18 gi|312136717|ref|YP_004004054.1| - 0.033 14.2 0.0 0.072 13.1 0.0 1.6 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HypA PF01155.19 gi|312136717|ref|YP_004004054.1| - 0.054 13.5 6.6 0.16 12.0 1.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|312136717|ref|YP_004004054.1| - 0.08 13.0 3.4 0.17 12.0 3.4 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2116 PF09889.9 gi|312136717|ref|YP_004004054.1| - 0.11 12.5 0.8 0.22 11.6 0.8 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.10 gi|312136717|ref|YP_004004054.1| - 0.12 12.5 2.0 4.3 7.5 0.1 2.4 1 1 2 3 3 3 0 Zinc ribbon domain YhfH PF14149.6 gi|312136717|ref|YP_004004054.1| - 0.21 11.6 6.1 2.2 8.4 0.4 2.5 1 1 1 2 2 2 0 YhfH-like protein DUF2321 PF10083.9 gi|312136717|ref|YP_004004054.1| - 0.37 10.4 3.8 3.2 7.4 3.8 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF1289 PF06945.13 gi|312136717|ref|YP_004004054.1| - 3.4 7.6 5.8 28 4.6 0.0 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1289) zf_UBZ PF18439.1 gi|312136717|ref|YP_004004054.1| - 9.9 5.9 6.0 11 5.7 0.4 2.6 2 1 1 3 3 2 0 Ubiquitin-Binding Zinc Finger HMD PF03201.16 gi|312136718|ref|YP_004004055.1| - 2.2e-41 140.0 2.5 4.4e-41 139.0 2.5 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|312136718|ref|YP_004004055.1| - 4.4e-07 30.2 0.1 1.2e-06 28.8 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|312136718|ref|YP_004004055.1| - 0.00026 20.6 0.2 0.00061 19.4 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|312136718|ref|YP_004004055.1| - 0.0022 18.5 1.1 0.0067 17.0 0.1 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent XylR_N PF06505.11 gi|312136718|ref|YP_004004055.1| - 0.074 12.8 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Activator of aromatic catabolism DapB_N PF01113.20 gi|312136718|ref|YP_004004055.1| - 0.093 12.8 0.1 0.31 11.2 0.1 1.9 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Amidohydro_1 PF01979.20 gi|312136719|ref|YP_004004056.1| - 1.1e-56 192.6 0.6 1.3e-56 192.4 0.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|312136719|ref|YP_004004056.1| - 5.7e-11 42.6 0.1 0.00029 20.4 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family HMGL-like PF00682.19 gi|312136719|ref|YP_004004056.1| - 9.7e-05 22.0 1.0 0.00073 19.2 0.0 2.3 2 1 0 2 2 2 1 HMGL-like DUF126 PF01989.16 gi|312136720|ref|YP_004004057.1| - 6.8e-38 128.3 0.6 1.1e-37 127.6 0.6 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain TruD PF01142.18 gi|312136721|ref|YP_004004058.1| - 1.2e-152 508.5 0.0 1.4e-152 508.4 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Rad17 PF03215.15 gi|312136722|ref|YP_004004059.1| - 0.0047 16.9 0.4 0.0057 16.6 0.4 1.1 1 0 0 1 1 1 1 Rad17 P-loop domain ABC2_membrane PF01061.24 gi|312136723|ref|YP_004004060.1| - 1.3e-39 135.8 24.3 1.3e-39 135.8 24.3 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|312136723|ref|YP_004004060.1| - 8.9e-16 57.9 35.4 8.9e-16 57.9 35.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|312136723|ref|YP_004004060.1| - 0.00054 19.3 31.8 0.008 15.5 31.8 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|312136723|ref|YP_004004060.1| - 0.048 13.6 27.0 0.021 14.8 20.5 2.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|312136724|ref|YP_004004061.1| - 1.5e-30 106.5 0.0 2.8e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136724|ref|YP_004004061.1| - 1.3e-11 44.9 1.8 4.9e-07 29.9 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|312136724|ref|YP_004004061.1| - 3.3e-08 34.1 2.9 7.8e-08 32.9 2.9 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|312136724|ref|YP_004004061.1| - 1.9e-07 31.8 2.2 8.9e-07 29.6 2.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|312136724|ref|YP_004004061.1| - 1.8e-05 24.6 6.5 0.0011 18.7 6.5 3.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|312136724|ref|YP_004004061.1| - 3.5e-05 23.4 0.0 6.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|312136724|ref|YP_004004061.1| - 5.8e-05 22.6 0.0 0.027 13.9 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|312136724|ref|YP_004004061.1| - 0.00013 22.4 0.1 0.0018 18.7 0.1 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|312136724|ref|YP_004004061.1| - 0.0014 19.0 0.0 0.0034 17.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|312136724|ref|YP_004004061.1| - 0.0056 16.3 0.0 0.012 15.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|312136724|ref|YP_004004061.1| - 0.011 16.0 0.2 0.077 13.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|312136724|ref|YP_004004061.1| - 0.017 15.1 0.0 0.017 15.1 0.0 2.3 1 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|312136724|ref|YP_004004061.1| - 0.024 14.4 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|312136724|ref|YP_004004061.1| - 0.029 14.2 1.0 1.1 9.0 1.0 2.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|312136724|ref|YP_004004061.1| - 0.03 14.3 0.0 0.078 12.9 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain SRP54 PF00448.22 gi|312136724|ref|YP_004004061.1| - 0.039 13.6 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|312136724|ref|YP_004004061.1| - 0.043 13.2 0.0 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|312136724|ref|YP_004004061.1| - 0.044 13.8 0.2 1.9 8.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|312136724|ref|YP_004004061.1| - 0.056 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|312136724|ref|YP_004004061.1| - 0.059 13.0 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.21 gi|312136724|ref|YP_004004061.1| - 0.059 13.4 0.1 2.3 8.2 0.0 2.4 2 0 0 2 2 2 0 MutS domain V AAA_24 PF13479.6 gi|312136724|ref|YP_004004061.1| - 0.078 12.7 1.4 0.36 10.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|312136724|ref|YP_004004061.1| - 0.089 13.0 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|312136724|ref|YP_004004061.1| - 0.2 11.8 1.6 1.1 9.4 1.6 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF4325 PF14213.6 gi|312136724|ref|YP_004004061.1| - 0.39 10.5 5.9 0.1 12.3 1.4 2.5 3 0 0 3 3 2 0 STAS-like domain of unknown function (DUF4325) Lactamase_B PF00753.27 gi|312136725|ref|YP_004004062.1| - 1.8e-25 90.1 0.9 6.1e-25 88.4 0.9 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312136725|ref|YP_004004062.1| - 4.1e-06 26.4 0.0 4.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CHB_HEX_C PF03174.13 gi|312136725|ref|YP_004004062.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain MqsA_antitoxin PF15731.5 gi|312136726|ref|YP_004004063.1| - 0.0037 17.4 0.3 0.061 13.4 0.1 2.6 3 0 0 3 3 3 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Rad50_zn_hook PF04423.14 gi|312136726|ref|YP_004004063.1| - 0.0089 15.8 0.5 0.025 14.4 0.1 2.0 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-C2HCIx2C PF10782.9 gi|312136726|ref|YP_004004063.1| - 0.96 9.4 3.9 0.98 9.4 0.4 2.7 3 1 0 3 3 3 0 Zinc-finger DUF2099 PF09872.9 gi|312136727|ref|YP_004004064.1| - 3.1e-109 364.1 6.2 3.7e-109 363.9 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) HTH_45 PF14947.6 gi|312136727|ref|YP_004004064.1| - 0.011 15.7 0.2 0.034 14.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix FrhB_FdhB_N PF04422.13 gi|312136727|ref|YP_004004064.1| - 0.31 11.2 2.0 20 5.4 0.2 2.8 3 0 0 3 3 3 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CBS PF00571.28 gi|312136728|ref|YP_004004065.1| - 2.8e-31 107.7 2.0 3.9e-15 56.0 0.1 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_S55 PF05580.12 gi|312136728|ref|YP_004004065.1| - 0.013 15.4 0.1 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 SpoIVB peptidase S55 ThiC_Rad_SAM PF01964.18 gi|312136729|ref|YP_004004066.1| - 8.9e-188 624.3 3.2 1e-187 624.1 3.2 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family TraD PF06412.11 gi|312136729|ref|YP_004004066.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Conjugal transfer protein TraD DNA_ligase_A_M PF01068.21 gi|312136730|ref|YP_004004067.1| - 1.7e-60 204.2 0.5 3e-60 203.4 0.5 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|312136730|ref|YP_004004067.1| - 8e-41 140.2 2.8 2.5e-40 138.6 1.9 2.1 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|312136730|ref|YP_004004067.1| - 2.8e-18 66.3 0.0 9.1e-18 64.7 0.0 1.9 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|312136730|ref|YP_004004067.1| - 1.4e-08 35.2 0.5 2.4e-08 34.5 0.5 1.4 1 0 0 1 1 1 1 RNA ligase Fer4 PF00037.27 gi|312136731|ref|YP_004004068.1| - 6.4e-10 38.4 17.3 2.4e-06 27.1 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136731|ref|YP_004004068.1| - 1.9e-09 38.0 9.1 2.5e-09 37.6 9.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136731|ref|YP_004004068.1| - 3e-09 36.9 21.6 4.3e-07 30.0 11.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136731|ref|YP_004004068.1| - 3.5e-09 36.3 13.1 0.0002 21.3 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136731|ref|YP_004004068.1| - 1.5e-08 34.6 22.6 3.8e-07 30.1 12.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312136731|ref|YP_004004068.1| - 5.7e-08 32.8 8.2 1.2e-07 31.8 8.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136731|ref|YP_004004068.1| - 8.1e-08 31.9 11.7 0.0004 20.3 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|312136731|ref|YP_004004068.1| - 1.3e-06 28.5 10.9 0.0011 19.3 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|312136731|ref|YP_004004068.1| - 1.6e-06 28.8 7.1 0.0018 19.1 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136731|ref|YP_004004068.1| - 2.5e-06 28.3 12.4 5.2e-05 24.1 1.0 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|312136731|ref|YP_004004068.1| - 5.1e-05 23.7 13.9 0.02 15.4 2.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136731|ref|YP_004004068.1| - 0.00012 22.4 14.0 0.052 14.0 3.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136731|ref|YP_004004068.1| - 0.0024 18.4 9.2 0.056 14.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|312136731|ref|YP_004004068.1| - 0.0047 17.8 15.6 0.35 11.9 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|312136731|ref|YP_004004068.1| - 0.013 16.2 9.6 0.44 11.3 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain MDH PF02315.16 gi|312136731|ref|YP_004004068.1| - 3.6 7.7 8.1 0.35 11.0 0.6 2.0 1 1 1 2 2 2 0 Methanol dehydrogenase beta subunit Asparaginase PF00710.20 gi|312136732|ref|YP_004004069.1| - 3.7e-62 209.3 0.1 9.5e-62 208.0 0.0 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|312136732|ref|YP_004004069.1| - 2.3e-38 130.9 0.1 1.2e-37 128.6 0.1 2.0 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|312136732|ref|YP_004004069.1| - 5.2e-21 73.7 1.8 5.2e-21 73.7 1.8 1.8 2 0 0 2 2 2 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|312136732|ref|YP_004004069.1| - 0.0059 16.2 0.3 0.09 12.3 0.0 2.6 1 1 1 2 2 2 1 Periplasmic binding protein domain HGD-D PF06050.13 gi|312136732|ref|YP_004004069.1| - 0.025 14.4 0.0 0.095 12.4 0.0 1.9 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component GatB_N PF02934.15 gi|312136733|ref|YP_004004070.1| - 3.8e-71 239.7 0.4 5.7e-71 239.1 0.4 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|312136733|ref|YP_004004070.1| - 1.7e-25 89.6 7.1 5.1e-25 88.1 7.1 1.9 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|312136733|ref|YP_004004070.1| - 1.9e-15 56.9 0.0 4.6e-14 52.4 0.0 2.9 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|312136733|ref|YP_004004070.1| - 6.9e-08 32.7 0.8 3.5e-07 30.4 0.8 2.2 1 0 0 1 1 1 1 Yqey-like protein RTBV_P12 PF06361.11 gi|312136733|ref|YP_004004070.1| - 0.091 13.2 0.2 0.31 11.4 0.2 2.0 1 0 0 1 1 1 0 Rice tungro bacilliform virus P12 protein Glycos_trans_3N PF02885.17 gi|312136733|ref|YP_004004070.1| - 0.19 11.6 2.5 19 5.2 0.2 3.3 2 1 1 3 3 3 0 Glycosyl transferase family, helical bundle domain Pyr_redox_2 PF07992.14 gi|312136734|ref|YP_004004071.1| - 1.6e-54 185.2 2.6 1.8e-54 185.0 2.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|312136734|ref|YP_004004071.1| - 5.3e-31 108.0 9.1 5.8e-26 91.5 1.5 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|312136734|ref|YP_004004071.1| - 5.4e-19 68.5 0.4 5.4e-19 68.5 0.4 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|312136734|ref|YP_004004071.1| - 2.7e-08 33.0 9.9 0.00012 20.9 0.6 3.8 3 1 1 4 4 4 3 HI0933-like protein GIDA PF01134.22 gi|312136734|ref|YP_004004071.1| - 7.2e-08 31.9 14.8 0.013 14.6 0.3 4.7 3 2 2 5 5 5 4 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|312136734|ref|YP_004004071.1| - 5.1e-07 29.4 3.3 3.7e-05 23.3 0.2 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|312136734|ref|YP_004004071.1| - 1.5e-05 25.1 0.4 0.00051 20.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|312136734|ref|YP_004004071.1| - 2.7e-05 23.5 4.4 0.00035 19.9 1.0 2.6 2 2 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|312136734|ref|YP_004004071.1| - 4.5e-05 22.9 1.6 0.0043 16.4 0.9 2.3 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.6 gi|312136734|ref|YP_004004071.1| - 7.4e-05 22.0 0.8 0.14 11.2 0.3 3.5 1 1 2 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|312136734|ref|YP_004004071.1| - 8.5e-05 21.8 9.6 0.00015 21.0 2.4 3.7 3 1 0 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.6 gi|312136734|ref|YP_004004071.1| - 8.9e-05 22.9 2.9 0.0011 19.4 0.2 2.8 3 0 0 3 3 3 1 Putative NAD(P)-binding DAO PF01266.24 gi|312136734|ref|YP_004004071.1| - 0.0022 17.6 10.9 0.0088 15.7 3.1 3.2 3 1 1 4 4 4 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|312136734|ref|YP_004004071.1| - 0.026 13.8 1.6 7.9 5.6 0.8 2.9 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|312136734|ref|YP_004004071.1| - 0.052 13.5 3.1 1.9 8.5 0.0 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding MCRA PF06100.11 gi|312136734|ref|YP_004004071.1| - 0.061 12.1 0.2 0.33 9.7 0.0 2.0 2 0 0 2 2 2 0 MCRA family Lycopene_cycl PF05834.12 gi|312136734|ref|YP_004004071.1| - 0.11 11.5 1.9 1.3 8.0 0.9 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|312136734|ref|YP_004004071.1| - 0.27 10.1 1.3 11 4.7 0.6 2.2 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|312136734|ref|YP_004004071.1| - 0.44 9.8 4.1 1.3 8.3 0.0 2.5 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|312136734|ref|YP_004004071.1| - 3 7.9 5.8 0.56 10.3 0.2 2.5 3 1 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase GATase PF00117.28 gi|312136735|ref|YP_004004072.1| - 7e-43 146.6 0.1 7.8e-43 146.5 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|312136735|ref|YP_004004072.1| - 4.1e-13 49.6 0.1 3.1e-12 46.7 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 GMP_synt_C PF00958.22 gi|312136736|ref|YP_004004073.1| - 2.2e-34 117.4 0.0 4.4e-34 116.4 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|312136736|ref|YP_004004073.1| - 1.6e-14 53.7 0.9 8.9e-08 31.5 0.0 2.4 3 0 0 3 3 3 2 NAD synthase tRNA_Me_trans PF03054.16 gi|312136736|ref|YP_004004073.1| - 1.2e-05 24.3 0.0 0.0014 17.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|312136736|ref|YP_004004073.1| - 1.8e-05 24.4 0.0 0.00099 18.7 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|312136736|ref|YP_004004073.1| - 3.8e-05 23.3 0.0 0.00012 21.7 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|312136736|ref|YP_004004073.1| - 6.8e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|312136736|ref|YP_004004073.1| - 0.0093 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|312136736|ref|YP_004004073.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|312136736|ref|YP_004004073.1| - 0.024 13.9 0.0 0.049 12.9 0.0 1.6 1 1 0 1 1 1 0 Arginosuccinate synthase DegT_DnrJ_EryC1 PF01041.17 gi|312136737|ref|YP_004004074.1| - 2.6e-08 33.6 0.0 1e-07 31.6 0.0 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|312136737|ref|YP_004004074.1| - 0.0005 19.2 0.1 0.2 10.6 0.0 2.5 2 1 0 2 2 2 2 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|312136737|ref|YP_004004074.1| - 0.0034 16.0 0.0 0.006 15.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MT0933_antitox PF14013.6 gi|312136737|ref|YP_004004074.1| - 0.0089 16.3 0.0 0.028 14.7 0.0 1.8 1 0 0 1 1 1 1 MT0933-like antitoxin protein DNA_pol_D_N PF18018.1 gi|312136737|ref|YP_004004074.1| - 0.13 12.4 0.1 0.59 10.2 0.0 2.0 2 0 0 2 2 2 0 DNA polymerase delta subunit OB-fold domain BioT2 PF15368.6 gi|312136737|ref|YP_004004074.1| - 0.39 10.6 2.6 0.5 10.3 1.6 1.6 2 0 0 2 2 2 0 Spermatogenesis family BioT2 CGI-121 PF08617.10 gi|312136738|ref|YP_004004075.1| - 6.5e-10 39.4 0.1 9.1e-10 38.9 0.1 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 HMGL-like PF00682.19 gi|312136739|ref|YP_004004076.1| - 1e-80 271.1 1.7 1.7e-80 270.3 1.7 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|312136739|ref|YP_004004076.1| - 2.2e-35 121.4 0.7 5.6e-35 120.1 0.7 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain SpoU_sub_bind PF08032.12 gi|312136739|ref|YP_004004076.1| - 0.021 15.1 0.2 0.093 13.0 0.2 2.2 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding UPF0020 PF01170.18 gi|312136740|ref|YP_004004077.1| - 1.2e-41 142.6 0.0 6.8e-41 140.1 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|312136740|ref|YP_004004077.1| - 1.1e-16 61.2 3.3 2.1e-16 60.4 3.3 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|312136740|ref|YP_004004077.1| - 6.7e-13 48.7 0.2 1.1e-12 48.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|312136740|ref|YP_004004077.1| - 1.1e-10 41.7 0.0 8.3e-06 25.7 0.0 2.4 2 1 0 2 2 2 2 DNA methylase MTS PF05175.14 gi|312136740|ref|YP_004004077.1| - 1.1e-09 38.1 0.0 1.9e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|312136740|ref|YP_004004077.1| - 1.1e-07 31.6 0.0 1.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|312136740|ref|YP_004004077.1| - 1.4e-07 31.4 0.0 2.3e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|312136740|ref|YP_004004077.1| - 3.1e-07 30.0 0.0 6.6e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.6 gi|312136740|ref|YP_004004077.1| - 9.5e-07 29.4 0.0 2e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|312136740|ref|YP_004004077.1| - 1.2e-06 28.2 0.0 0.0085 15.6 0.0 2.3 1 1 1 2 2 2 2 RRNA methyltransferase AviRa MethyltransfD12 PF02086.15 gi|312136740|ref|YP_004004077.1| - 1.5e-05 24.8 0.2 0.026 14.2 0.0 2.3 1 1 1 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase PrmA PF06325.13 gi|312136740|ref|YP_004004077.1| - 6.1e-05 22.6 0.1 0.00011 21.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|312136740|ref|YP_004004077.1| - 0.00057 19.3 0.1 0.0012 18.3 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|312136740|ref|YP_004004077.1| - 0.001 18.7 0.0 0.012 15.2 0.0 2.6 2 1 0 2 2 2 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|312136740|ref|YP_004004077.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|312136740|ref|YP_004004077.1| - 0.0021 18.7 0.0 0.005 17.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.11 gi|312136740|ref|YP_004004077.1| - 0.004 17.6 0.0 0.01 16.3 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6-adenineMlase PF10237.9 gi|312136740|ref|YP_004004077.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase DUF43 PF01861.16 gi|312136740|ref|YP_004004077.1| - 0.014 14.6 0.1 0.031 13.5 0.1 1.5 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Spermine_synth PF01564.17 gi|312136740|ref|YP_004004077.1| - 0.015 14.7 0.7 0.075 12.4 0.2 2.1 2 0 0 2 2 2 0 Spermine/spermidine synthase domain Methyltransf_12 PF08242.12 gi|312136740|ref|YP_004004077.1| - 0.021 15.5 0.0 0.045 14.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF3712 PF12505.8 gi|312136740|ref|YP_004004077.1| - 0.05 13.9 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3712) PCMT PF01135.19 gi|312136740|ref|YP_004004077.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.11 gi|312136740|ref|YP_004004077.1| - 0.19 11.4 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DAO PF01266.24 gi|312136741|ref|YP_004004078.1| - 1.9e-14 54.0 0.1 6.7e-06 25.9 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|312136741|ref|YP_004004078.1| - 6.8e-14 51.9 0.0 9.3e-08 31.7 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|312136741|ref|YP_004004078.1| - 5.9e-11 42.0 0.0 8.3e-07 28.4 0.1 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|312136741|ref|YP_004004078.1| - 4.7e-10 38.9 0.1 5.7e-06 25.4 0.0 3.1 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|312136741|ref|YP_004004078.1| - 2.9e-08 33.3 0.2 6.2e-08 32.2 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|312136741|ref|YP_004004078.1| - 1.1e-07 31.4 0.9 1e-05 24.9 0.9 2.7 1 1 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|312136741|ref|YP_004004078.1| - 1.3e-07 32.1 3.2 0.0069 16.9 0.0 3.6 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|312136741|ref|YP_004004078.1| - 1.6e-06 27.1 1.7 0.00029 19.7 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|312136741|ref|YP_004004078.1| - 7.5e-06 26.1 0.0 1.6e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|312136741|ref|YP_004004078.1| - 7.8e-05 21.9 0.1 0.00055 19.1 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|312136741|ref|YP_004004078.1| - 0.00052 19.4 7.1 0.0006 19.2 3.3 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|312136741|ref|YP_004004078.1| - 0.0018 17.7 0.0 0.0043 16.5 0.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|312136741|ref|YP_004004078.1| - 0.0023 18.4 0.0 0.0042 17.6 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|312136741|ref|YP_004004078.1| - 0.0025 17.7 0.0 0.0055 16.6 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|312136741|ref|YP_004004078.1| - 0.0066 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|312136741|ref|YP_004004078.1| - 0.0074 16.3 0.0 0.021 14.8 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Mur_ligase PF01225.25 gi|312136741|ref|YP_004004078.1| - 0.015 15.6 0.4 0.99 9.8 0.1 2.9 3 0 0 3 3 3 0 Mur ligase family, catalytic domain SE PF08491.10 gi|312136741|ref|YP_004004078.1| - 0.015 14.3 0.0 0.031 13.3 0.0 1.5 1 0 0 1 1 1 0 Squalene epoxidase DUF624 PF04854.14 gi|312136741|ref|YP_004004078.1| - 0.016 15.3 0.0 0.036 14.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF624 GIDA PF01134.22 gi|312136741|ref|YP_004004078.1| - 0.018 14.1 0.4 0.055 12.5 0.4 1.9 1 1 1 2 2 2 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|312136741|ref|YP_004004078.1| - 0.032 14.5 0.3 0.11 12.7 0.0 2.1 2 0 0 2 2 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|312136741|ref|YP_004004078.1| - 0.036 14.3 0.6 0.47 10.7 0.1 2.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|312136741|ref|YP_004004078.1| - 0.092 12.4 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|312136741|ref|YP_004004078.1| - 0.1 13.1 0.2 0.3 11.6 0.2 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|312136741|ref|YP_004004078.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|312136741|ref|YP_004004078.1| - 0.15 12.7 0.4 1.3 9.7 0.0 2.6 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Baculo_LEF-11 PF06385.12 gi|312136741|ref|YP_004004078.1| - 0.87 10.1 5.3 1.3 9.5 0.3 2.7 2 1 0 2 2 2 0 Baculovirus LEF-11 protein bPH_2 PF03703.14 gi|312136742|ref|YP_004004079.1| - 4.1e-18 65.3 0.0 5.4e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.11 gi|312136742|ref|YP_004004079.1| - 0.012 15.7 0.1 0.021 14.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial PH domain bPH_3 PF14470.6 gi|312136742|ref|YP_004004079.1| - 0.059 13.7 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial PH domain ApbE PF02424.15 gi|312136743|ref|YP_004004080.1| - 0.13 11.7 3.5 3.7 7.0 3.6 2.1 1 1 0 1 1 1 0 ApbE family AAA PF00004.29 gi|312136744|ref|YP_004004081.1| - 1.5e-45 154.8 0.2 5.8e-45 152.9 0.0 2.1 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|312136744|ref|YP_004004081.1| - 4.6e-18 64.8 0.2 1.2e-17 63.4 0.2 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|312136744|ref|YP_004004081.1| - 4.3e-14 52.2 0.1 9.2e-14 51.2 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|312136744|ref|YP_004004081.1| - 9.3e-08 32.4 0.0 2.2e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|312136744|ref|YP_004004081.1| - 1.2e-07 31.8 0.4 1.4e-06 28.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|312136744|ref|YP_004004081.1| - 1.2e-06 29.0 0.1 0.00035 21.0 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|312136744|ref|YP_004004081.1| - 2.4e-06 27.4 0.1 8.6e-06 25.6 0.0 2.0 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|312136744|ref|YP_004004081.1| - 2.4e-05 23.9 0.0 6.9e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|312136744|ref|YP_004004081.1| - 2.7e-05 24.5 0.4 0.0015 18.8 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|312136744|ref|YP_004004081.1| - 0.00014 22.1 0.0 0.00027 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|312136744|ref|YP_004004081.1| - 0.00023 20.4 0.0 0.00036 19.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|312136744|ref|YP_004004081.1| - 0.0006 19.6 0.2 0.0026 17.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|312136744|ref|YP_004004081.1| - 0.00095 19.2 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|312136744|ref|YP_004004081.1| - 0.001 18.4 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|312136744|ref|YP_004004081.1| - 0.0011 19.5 0.5 0.0033 18.0 0.0 2.1 2 0 0 2 2 1 1 AAA domain RNA_helicase PF00910.22 gi|312136744|ref|YP_004004081.1| - 0.0013 19.0 0.0 0.003 17.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|312136744|ref|YP_004004081.1| - 0.0034 17.5 0.0 0.0078 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|312136744|ref|YP_004004081.1| - 0.008 15.9 0.1 0.024 14.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|312136744|ref|YP_004004081.1| - 0.0092 15.3 4.9 0.13 11.6 0.0 3.0 2 1 1 3 3 3 1 KaiC Mg_chelatase PF01078.21 gi|312136744|ref|YP_004004081.1| - 0.0097 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI MAD PF05557.13 gi|312136744|ref|YP_004004081.1| - 0.012 14.0 1.8 0.022 13.2 1.8 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein AAA_11 PF13086.6 gi|312136744|ref|YP_004004081.1| - 0.015 15.1 0.6 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2046 PF09755.9 gi|312136744|ref|YP_004004081.1| - 0.016 14.5 7.0 0.025 13.8 7.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) AAA_7 PF12775.7 gi|312136744|ref|YP_004004081.1| - 0.019 14.5 0.0 0.045 13.3 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region AAA_17 PF13207.6 gi|312136744|ref|YP_004004081.1| - 0.021 15.3 3.4 0.29 11.6 0.1 3.3 2 1 1 3 3 3 0 AAA domain Sigma54_activat PF00158.26 gi|312136744|ref|YP_004004081.1| - 0.021 14.5 0.1 0.094 12.4 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain DUF3584 PF12128.8 gi|312136744|ref|YP_004004081.1| - 0.025 12.1 1.9 0.032 11.8 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_3 PF07726.11 gi|312136744|ref|YP_004004081.1| - 0.029 14.2 0.0 0.14 12.0 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1640 PF07798.11 gi|312136744|ref|YP_004004081.1| - 0.032 14.3 3.8 0.074 13.1 3.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) YabA PF06156.13 gi|312136744|ref|YP_004004081.1| - 0.041 14.5 0.8 0.55 10.9 1.3 2.3 2 0 0 2 2 2 0 Initiation control protein YabA ATPase_2 PF01637.18 gi|312136744|ref|YP_004004081.1| - 0.042 13.8 3.3 0.22 11.4 0.0 2.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|312136744|ref|YP_004004081.1| - 0.042 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|312136744|ref|YP_004004081.1| - 0.044 12.9 0.0 0.08 12.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF1192 PF06698.11 gi|312136744|ref|YP_004004081.1| - 0.046 13.8 4.5 0.5 10.5 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Zeta_toxin PF06414.12 gi|312136744|ref|YP_004004081.1| - 0.051 12.8 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|312136744|ref|YP_004004081.1| - 0.067 13.7 0.4 0.47 11.0 0.0 2.3 2 1 0 2 2 2 0 ABC transporter PhoH PF02562.16 gi|312136744|ref|YP_004004081.1| - 0.078 12.4 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.12 gi|312136744|ref|YP_004004081.1| - 0.11 12.4 0.1 0.42 10.5 0.0 1.9 1 1 1 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|312136744|ref|YP_004004081.1| - 0.14 11.7 2.4 0.33 10.5 0.1 2.5 2 1 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|312136744|ref|YP_004004081.1| - 0.14 11.8 0.2 0.33 10.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|312136744|ref|YP_004004081.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Torsin DUF2075 PF09848.9 gi|312136744|ref|YP_004004081.1| - 0.2 10.8 1.3 0.5 9.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) FlaC_arch PF05377.11 gi|312136744|ref|YP_004004081.1| - 0.24 11.8 4.1 14 6.2 0.3 3.4 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) JIP_LZII PF16471.5 gi|312136744|ref|YP_004004081.1| - 0.76 10.0 8.3 0.69 10.1 2.0 2.9 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Med9 PF07544.13 gi|312136744|ref|YP_004004081.1| - 1.1 9.4 6.1 6.6 6.9 0.6 3.6 3 1 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 TolA_bind_tri PF16331.5 gi|312136744|ref|YP_004004081.1| - 8.7 6.5 9.5 7.1 6.8 0.2 3.2 3 1 1 4 4 3 0 TolA binding protein trimerisation PMT_2 PF13231.6 gi|312136745|ref|YP_004004082.1| - 1.1e-08 35.4 5.6 1.1e-08 35.4 5.6 3.9 3 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Prenyltrans PF00432.21 gi|312136745|ref|YP_004004082.1| - 0.00023 20.8 2.1 0.051 13.3 0.0 4.1 5 0 0 5 5 5 1 Prenyltransferase and squalene oxidase repeat Glyco_hydro_127 PF07944.12 gi|312136745|ref|YP_004004082.1| - 0.00037 19.1 0.1 0.00083 18.0 0.1 1.5 1 1 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 SQHop_cyclase_C PF13243.6 gi|312136745|ref|YP_004004082.1| - 0.00052 19.2 0.0 0.11 11.5 0.1 2.3 1 1 1 2 2 2 2 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|312136745|ref|YP_004004082.1| - 0.053 12.5 0.0 2.1 7.3 0.0 2.6 2 1 0 2 2 2 0 A-macroglobulin TED domain Glyco_hydro_88 PF07470.13 gi|312136745|ref|YP_004004082.1| - 0.078 12.0 0.1 0.14 11.2 0.1 1.4 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 DNA_binding_1 PF01035.20 gi|312136746|ref|YP_004004083.1| - 6e-30 103.2 0.0 1e-29 102.5 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Alliinase_C PF04864.13 gi|312136746|ref|YP_004004083.1| - 0.025 13.4 0.1 0.04 12.8 0.1 1.3 1 1 0 1 1 1 0 Allinase CdhD PF03599.16 gi|312136747|ref|YP_004004084.1| - 1.4e-154 514.5 0.1 1.9e-154 514.1 0.1 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|312136747|ref|YP_004004084.1| - 1.6e-16 59.7 1.9 5.7e-16 57.9 1.9 2.1 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.22 gi|312136747|ref|YP_004004084.1| - 0.00027 20.7 0.1 0.0079 15.9 0.1 2.3 1 1 0 1 1 1 1 Pterin binding enzyme Radical_SAM PF04055.21 gi|312136747|ref|YP_004004084.1| - 0.064 13.6 0.4 0.39 11.1 0.1 2.4 2 1 0 2 2 2 0 Radical SAM superfamily CdhD PF03599.16 gi|312136748|ref|YP_004004085.1| - 1.5e-93 313.6 1.7 7.1e-89 298.2 0.0 3.4 2 1 2 4 4 4 3 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|312136748|ref|YP_004004085.1| - 0.23 11.1 2.7 3 7.5 0.3 2.9 2 1 0 2 2 2 0 Pterin binding enzyme LXG PF04740.12 gi|312136748|ref|YP_004004085.1| - 0.33 10.6 2.4 0.53 10.0 2.4 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily CbiA PF01656.23 gi|312136749|ref|YP_004004086.1| - 1.2e-23 83.6 0.1 1.7e-23 83.1 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|312136749|ref|YP_004004086.1| - 8.1e-16 58.4 1.5 1.3e-15 57.8 0.4 1.9 2 1 0 2 2 1 1 AAA domain ParA PF10609.9 gi|312136749|ref|YP_004004086.1| - 1.3e-12 47.7 0.6 4e-12 46.1 0.6 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|312136749|ref|YP_004004086.1| - 2.5e-11 43.6 2.4 4.1e-05 23.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|312136749|ref|YP_004004086.1| - 1.4e-09 37.6 5.8 3.3e-08 33.1 5.2 3.4 1 1 1 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|312136749|ref|YP_004004086.1| - 4.6e-09 36.1 0.1 4.9e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|312136749|ref|YP_004004086.1| - 2.2e-07 30.5 0.4 0.0021 17.4 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_24 PF13479.6 gi|312136749|ref|YP_004004086.1| - 1.4e-05 24.9 0.0 5.4e-05 23.0 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|312136749|ref|YP_004004086.1| - 0.0026 17.3 0.3 0.0078 15.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|312136749|ref|YP_004004086.1| - 0.0048 17.3 0.0 0.0083 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain TrkA_N PF02254.18 gi|312136749|ref|YP_004004086.1| - 0.005 17.1 1.6 17 5.7 0.2 3.2 2 1 1 3 3 3 0 TrkA-N domain ResIII PF04851.15 gi|312136749|ref|YP_004004086.1| - 0.0063 16.5 0.4 0.02 14.9 0.0 1.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.6 gi|312136749|ref|YP_004004086.1| - 0.0096 16.4 0.0 0.024 15.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DUF2075 PF09848.9 gi|312136749|ref|YP_004004086.1| - 0.011 15.0 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_26 PF13500.6 gi|312136749|ref|YP_004004086.1| - 0.011 15.6 2.2 0.3 10.9 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|312136749|ref|YP_004004086.1| - 0.013 15.8 0.2 0.075 13.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|312136749|ref|YP_004004086.1| - 0.013 15.1 1.8 0.79 9.3 0.2 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|312136749|ref|YP_004004086.1| - 0.019 15.0 2.0 0.03 14.4 0.1 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain RecA PF00154.21 gi|312136749|ref|YP_004004086.1| - 0.022 14.3 0.2 0.054 12.9 0.1 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|312136749|ref|YP_004004086.1| - 0.031 14.3 0.3 0.15 12.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|312136749|ref|YP_004004086.1| - 0.032 14.6 0.0 0.25 11.7 0.0 2.3 2 1 0 2 2 2 0 RNA helicase LSDAT_prok PF18171.1 gi|312136749|ref|YP_004004086.1| - 0.038 13.2 0.0 0.12 11.5 0.0 1.9 1 1 1 2 2 2 0 SLOG in TRPM, prokaryote APS_kinase PF01583.20 gi|312136749|ref|YP_004004086.1| - 0.05 13.5 0.2 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|312136749|ref|YP_004004086.1| - 0.052 13.8 0.4 0.13 12.5 0.3 2.1 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|312136749|ref|YP_004004086.1| - 0.058 13.3 1.7 0.14 12.0 0.0 2.4 3 2 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B VirC1 PF07015.11 gi|312136749|ref|YP_004004086.1| - 0.086 12.1 0.1 1.9 7.7 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein NACHT PF05729.12 gi|312136749|ref|YP_004004086.1| - 0.1 12.5 0.6 0.16 11.9 0.6 1.7 1 1 0 1 1 1 0 NACHT domain IF2_N PF04760.15 gi|312136749|ref|YP_004004086.1| - 0.11 12.3 1.5 0.44 10.4 0.2 2.7 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region AAA_30 PF13604.6 gi|312136749|ref|YP_004004086.1| - 0.13 12.0 0.5 0.2 11.4 0.5 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|312136749|ref|YP_004004086.1| - 0.17 11.2 0.7 0.32 10.2 0.2 1.7 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.22 gi|312136749|ref|YP_004004086.1| - 0.21 10.7 2.3 0.43 9.7 0.9 2.0 2 0 0 2 2 2 0 NB-ARC domain CdhC PF03598.15 gi|312136750|ref|YP_004004087.1| - 5.1e-66 221.3 1.6 8.1e-66 220.7 1.6 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DUF1819 PF08849.11 gi|312136750|ref|YP_004004087.1| - 0.014 15.2 0.6 0.014 15.2 0.6 2.1 2 0 0 2 2 2 0 Putative inner membrane protein (DUF1819) DUF2175 PF09943.9 gi|312136750|ref|YP_004004087.1| - 2.2 8.7 5.9 5 7.5 0.7 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) OMS28_porin PF03532.13 gi|312136750|ref|YP_004004087.1| - 7 5.8 6.0 0.42 9.8 0.4 1.7 2 0 0 2 2 2 0 OMS28 porin CO_dh PF02552.16 gi|312136751|ref|YP_004004088.1| - 4.9e-40 137.1 0.1 5.8e-40 136.8 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|312136751|ref|YP_004004088.1| - 1.1e-05 25.2 0.0 2.9e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HypD PF01924.16 gi|312136751|ref|YP_004004088.1| - 0.0027 16.9 0.0 0.0038 16.4 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase formation hypA family SCRG1 PF15224.6 gi|312136751|ref|YP_004004088.1| - 0.074 13.2 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Scrapie-responsive protein 1 Mfa2 PF08842.10 gi|312136751|ref|YP_004004088.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 Prismane PF03063.20 gi|312136752|ref|YP_004004089.1| - 2.3e-99 333.4 8.5 3.3e-84 283.4 0.1 2.2 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|312136752|ref|YP_004004089.1| - 3.7e-06 27.0 11.0 3.7e-06 27.0 11.0 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136752|ref|YP_004004089.1| - 6.6e-06 26.6 15.8 0.00012 22.5 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312136752|ref|YP_004004089.1| - 9.3e-06 26.1 10.0 9.3e-06 26.1 10.0 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136752|ref|YP_004004089.1| - 6.8e-05 23.2 11.0 6.8e-05 23.2 11.0 2.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136752|ref|YP_004004089.1| - 0.00013 22.0 11.8 0.00013 22.0 11.8 2.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312136752|ref|YP_004004089.1| - 0.0005 20.1 10.3 0.0005 20.1 10.3 2.6 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312136752|ref|YP_004004089.1| - 0.00096 18.9 3.4 0.00096 18.9 3.4 4.0 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|312136752|ref|YP_004004089.1| - 0.0033 17.2 8.1 0.013 15.3 8.1 2.0 1 1 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CODH_A_N PF18537.1 gi|312136752|ref|YP_004004089.1| - 0.0056 16.7 0.1 0.022 14.8 0.0 2.0 2 0 0 2 2 2 1 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_16 PF13484.6 gi|312136752|ref|YP_004004089.1| - 0.039 14.9 0.5 0.039 14.9 0.5 3.9 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|312136752|ref|YP_004004089.1| - 0.041 14.4 0.6 0.041 14.4 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Flavoprotein PF02441.19 gi|312136752|ref|YP_004004089.1| - 0.15 11.8 0.0 0.47 10.2 0.0 1.9 1 0 0 1 1 1 0 Flavoprotein Fer4_4 PF12800.7 gi|312136752|ref|YP_004004089.1| - 1.7 9.4 13.8 2.2 9.0 2.2 3.3 2 0 0 2 2 2 0 4Fe-4S binding domain Adenine_deam_C PF13382.6 gi|312136753|ref|YP_004004090.1| - 6.6e-71 237.1 0.0 1.1e-70 236.4 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|312136753|ref|YP_004004090.1| - 4.8e-39 134.6 0.1 1.1e-37 130.1 0.1 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|312136753|ref|YP_004004090.1| - 1.2e-11 44.8 0.0 4.1e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family NEAT PF05031.12 gi|312136753|ref|YP_004004090.1| - 0.11 13.1 0.9 0.27 11.9 0.9 1.6 1 0 0 1 1 1 0 Iron Transport-associated domain DUF3659 PF12396.8 gi|312136753|ref|YP_004004090.1| - 0.18 11.8 3.6 7.7 6.5 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) PsiF_repeat PF07769.14 gi|312136754|ref|YP_004004091.1| - 0.1 12.5 1.9 0.26 11.2 1.9 1.7 1 0 0 1 1 1 0 psiF repeat VWA_CoxE PF05762.14 gi|312136755|ref|YP_004004092.1| - 3e-50 170.7 0.0 4.3e-50 170.2 0.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MA3 PF02847.17 gi|312136755|ref|YP_004004092.1| - 0.0068 16.4 3.0 2.8 8.0 0.7 2.8 2 1 0 2 2 2 2 MA3 domain DUF498 PF04430.14 gi|312136755|ref|YP_004004092.1| - 0.013 15.6 0.0 0.08 13.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) LKAAEAR PF15478.6 gi|312136755|ref|YP_004004092.1| - 0.023 15.0 1.7 0.049 13.9 1.7 1.6 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif Rubrerythrin PF02915.17 gi|312136755|ref|YP_004004092.1| - 0.09 13.2 3.5 0.094 13.1 1.8 2.0 2 0 0 2 2 2 0 Rubrerythrin hDGE_amylase PF14701.6 gi|312136755|ref|YP_004004092.1| - 0.25 10.4 3.7 0.12 11.5 1.6 1.5 2 0 0 2 2 2 0 Glycogen debranching enzyme, glucanotransferase domain Mitovir_RNA_pol PF05919.11 gi|312136755|ref|YP_004004092.1| - 0.31 10.1 6.1 0.73 8.9 2.1 2.1 2 0 0 2 2 2 0 Mitovirus RNA-dependent RNA polymerase AAA_5 PF07728.14 gi|312136756|ref|YP_004004093.1| - 9.6e-20 71.0 0.0 1.9e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|312136756|ref|YP_004004093.1| - 8.5e-15 54.8 0.0 1.6e-06 28.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|312136756|ref|YP_004004093.1| - 6.3e-12 46.1 0.1 3.6e-11 43.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|312136756|ref|YP_004004093.1| - 1.3e-08 35.4 0.1 8e-08 32.9 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 gi|312136756|ref|YP_004004093.1| - 1.9e-08 34.6 0.0 3.3e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_6 PF12774.7 gi|312136756|ref|YP_004004093.1| - 5.8e-07 28.8 0.0 1.2e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region AAA_22 PF13401.6 gi|312136756|ref|YP_004004093.1| - 5.4e-06 26.7 0.0 3.1e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|312136756|ref|YP_004004093.1| - 3.4e-05 23.6 0.1 0.087 12.6 0.0 2.8 2 1 1 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|312136756|ref|YP_004004093.1| - 6.7e-05 22.7 0.0 0.00028 20.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|312136756|ref|YP_004004093.1| - 7.4e-05 21.9 0.0 0.0064 15.6 0.0 2.4 2 0 0 2 2 2 1 MCM P-loop domain AAA_19 PF13245.6 gi|312136756|ref|YP_004004093.1| - 0.00018 21.9 0.0 0.13 12.6 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_18 PF13238.6 gi|312136756|ref|YP_004004093.1| - 0.0002 21.9 0.0 0.00064 20.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|312136756|ref|YP_004004093.1| - 0.00021 21.1 0.0 0.00041 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|312136756|ref|YP_004004093.1| - 0.00021 21.3 0.7 0.0014 18.7 0.2 2.6 1 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|312136756|ref|YP_004004093.1| - 0.0011 18.9 0.0 0.0068 16.3 0.0 2.2 2 1 1 3 3 3 1 NACHT domain AAA_7 PF12775.7 gi|312136756|ref|YP_004004093.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|312136756|ref|YP_004004093.1| - 0.0014 18.6 0.0 0.041 13.8 0.0 2.5 2 0 0 2 2 2 1 NTPase TIP49 PF06068.13 gi|312136756|ref|YP_004004093.1| - 0.0017 17.6 0.3 0.04 13.1 0.0 2.4 3 0 0 3 3 3 1 TIP49 P-loop domain TsaE PF02367.17 gi|312136756|ref|YP_004004093.1| - 0.0019 18.2 0.0 0.0032 17.5 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|312136756|ref|YP_004004093.1| - 0.0026 17.6 0.1 0.0046 16.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta2 PF13177.6 gi|312136756|ref|YP_004004093.1| - 0.0027 17.5 0.2 0.48 10.2 0.0 3.1 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|312136756|ref|YP_004004093.1| - 0.0028 18.0 0.0 0.012 16.0 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|312136756|ref|YP_004004093.1| - 0.0032 16.9 0.0 0.065 12.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|312136756|ref|YP_004004093.1| - 0.0048 16.6 0.0 0.035 13.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|312136756|ref|YP_004004093.1| - 0.0061 16.7 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|312136756|ref|YP_004004093.1| - 0.0062 15.9 0.1 0.083 12.2 0.0 2.4 3 0 0 3 3 3 1 KaiC ATPase_2 PF01637.18 gi|312136756|ref|YP_004004093.1| - 0.0067 16.4 1.9 0.016 15.1 0.3 2.4 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|312136756|ref|YP_004004093.1| - 0.012 15.3 0.0 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Guanylate_kin PF00625.21 gi|312136756|ref|YP_004004093.1| - 0.021 14.5 0.1 5.6 6.6 0.1 2.4 2 0 0 2 2 2 0 Guanylate kinase LSM14 PF12701.7 gi|312136756|ref|YP_004004093.1| - 0.029 14.5 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 Scd6-like Sm domain CbiA PF01656.23 gi|312136756|ref|YP_004004093.1| - 0.035 14.2 0.2 0.1 12.7 0.2 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GvpD PF07088.11 gi|312136756|ref|YP_004004093.1| - 0.056 12.1 0.0 0.067 11.8 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_28 PF13521.6 gi|312136756|ref|YP_004004093.1| - 0.056 13.7 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|312136756|ref|YP_004004093.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase Zeta_toxin PF06414.12 gi|312136756|ref|YP_004004093.1| - 0.083 12.2 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Aminotran_3 PF00202.21 gi|312136757|ref|YP_004004094.1| - 2.8e-130 434.7 0.1 3.2e-130 434.4 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|312136757|ref|YP_004004094.1| - 4.7e-09 35.9 0.0 5.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|312136757|ref|YP_004004094.1| - 5.9e-06 25.8 0.0 1.3e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|312136757|ref|YP_004004094.1| - 1.5e-05 24.2 0.0 3e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Peptidase_M48 PF01435.18 gi|312136758|ref|YP_004004095.1| - 9.1e-20 71.3 0.0 2e-19 70.2 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|312136758|ref|YP_004004095.1| - 0.07 12.3 2.2 0.21 10.7 1.4 2.1 1 1 1 2 2 2 0 BlaR1 peptidase M56 SprT-like PF10263.9 gi|312136758|ref|YP_004004095.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 SprT-like family Halogen_Hydrol PF10112.9 gi|312136758|ref|YP_004004095.1| - 1.1 9.2 4.4 0.93 9.5 0.5 2.1 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein 3H PF02829.14 gi|312136759|ref|YP_004004096.1| - 3.5e-71 235.6 14.5 5.8e-24 84.2 0.1 4.2 4 0 0 4 4 4 3 3H domain TrkA_N PF02254.18 gi|312136759|ref|YP_004004096.1| - 2.1e-32 111.8 0.9 1.3e-31 109.2 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|312136759|ref|YP_004004096.1| - 3.9e-10 39.5 13.7 7e-10 38.7 13.7 1.4 1 0 0 1 1 1 1 Ion channel NAD_binding_7 PF13241.6 gi|312136759|ref|YP_004004096.1| - 0.00032 21.1 0.3 0.008 16.6 0.1 2.9 3 1 0 3 3 3 1 Putative NAD(P)-binding RraB PF06877.11 gi|312136759|ref|YP_004004096.1| - 0.024 15.4 0.0 2.4 8.9 0.0 3.5 3 0 0 3 3 3 0 Regulator of ribonuclease activity B Sacchrp_dh_NADP PF03435.18 gi|312136759|ref|YP_004004096.1| - 0.029 14.6 0.5 0.37 11.0 0.0 2.7 3 1 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Exog_C PF18026.1 gi|312136759|ref|YP_004004096.1| - 0.11 12.6 0.1 0.11 12.6 0.1 5.4 6 0 0 6 6 6 0 Endo/exonuclease (EXOG) C-terminal domain NAD_binding_10 PF13460.6 gi|312136759|ref|YP_004004096.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding ELFV_dehydrog PF00208.21 gi|312136759|ref|YP_004004096.1| - 0.16 11.7 0.2 2.1 8.0 0.0 2.4 1 1 1 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FTR_C PF02741.15 gi|312136760|ref|YP_004004097.1| - 1.2e-70 236.3 1.7 2e-70 235.6 1.7 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|312136760|ref|YP_004004097.1| - 2.2e-59 199.5 0.0 4.3e-59 198.5 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase LAL_C2 PF18603.1 gi|312136760|ref|YP_004004097.1| - 1.2 9.4 4.5 14 6.0 0.0 3.5 4 0 0 4 4 4 0 L-amino acid ligase C-terminal domain 2 LPG_synthase_TM PF03706.13 gi|312136761|ref|YP_004004098.1| - 1.3e-50 172.6 28.1 1.6e-50 172.4 28.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region UPF0242 PF06785.11 gi|312136761|ref|YP_004004098.1| - 0.5 10.4 4.0 0.13 12.4 0.4 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Metallophos_2 PF12850.7 gi|312136762|ref|YP_004004099.1| - 3.7e-30 105.3 0.0 4.1e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|312136762|ref|YP_004004099.1| - 1.7e-09 38.5 2.0 4.1e-06 27.4 0.4 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|312136762|ref|YP_004004099.1| - 3e-05 23.5 0.5 0.013 14.9 0.1 2.1 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Sigma70_r1_1 PF03979.14 gi|312136762|ref|YP_004004099.1| - 0.16 12.0 0.2 0.59 10.2 0.1 1.9 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 CobN-Mg_chel PF02514.16 gi|312136763|ref|YP_004004100.1| - 1.5e-271 903.8 0.1 1.1e-210 702.2 0.0 3.3 2 1 0 3 3 3 3 CobN/Magnesium Chelatase DUF3479 PF11965.8 gi|312136763|ref|YP_004004100.1| - 0.025 14.7 0.0 0.082 13.0 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) Acylphosphatase PF00708.18 gi|312136764|ref|YP_004004101.1| - 2.9e-29 101.3 0.5 3.2e-29 101.2 0.5 1.0 1 0 0 1 1 1 1 Acylphosphatase DNA_gyraseB PF00204.25 gi|312136764|ref|YP_004004101.1| - 0.03 13.8 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 DNA gyrase B UPF0176_N PF17773.1 gi|312136764|ref|YP_004004101.1| - 0.032 14.6 0.0 0.039 14.3 0.0 1.1 1 0 0 1 1 1 0 UPF0176 acylphosphatase like domain BLUF PF04940.12 gi|312136764|ref|YP_004004101.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Sensors of blue-light using FAD DUF87 PF01935.17 gi|312136765|ref|YP_004004102.1| - 7.5e-31 108.0 0.2 1.3e-30 107.2 0.2 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|312136765|ref|YP_004004102.1| - 3.2e-05 23.0 0.0 0.099 11.5 0.0 2.5 2 0 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|312136765|ref|YP_004004102.1| - 0.00071 19.0 0.0 0.0019 17.6 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|312136765|ref|YP_004004102.1| - 0.024 13.6 0.0 0.21 10.5 0.0 2.1 2 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SepF PF04472.12 gi|312136765|ref|YP_004004102.1| - 0.11 12.8 0.1 0.36 11.1 0.1 1.8 2 0 0 2 2 2 0 Cell division protein SepF NurA PF09376.10 gi|312136766|ref|YP_004004103.1| - 3.2e-11 43.4 0.1 2.1e-10 40.7 0.1 2.0 1 1 0 1 1 1 1 NurA domain UFD1 PF03152.14 gi|312136766|ref|YP_004004103.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 DUF2097 PF09870.9 gi|312136767|ref|YP_004004104.1| - 5.6e-28 97.0 3.0 6.8e-28 96.7 3.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) Bacteriocin_IId PF09221.10 gi|312136768|ref|YP_004004105.1| - 0.56 10.4 8.5 1.1 9.4 1.4 3.6 3 0 0 3 3 3 0 Bacteriocin class IId cyclical uberolysin-like Osmo_MPGsynth PF09488.10 gi|312136769|ref|YP_004004106.1| - 1e-147 491.9 0.5 1.2e-147 491.7 0.5 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Glyco_tranf_2_2 PF10111.9 gi|312136769|ref|YP_004004106.1| - 0.041 13.4 0.2 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Hydrolase_3 PF08282.12 gi|312136770|ref|YP_004004107.1| - 1e-16 61.5 5.1 6.9e-16 58.8 5.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|312136770|ref|YP_004004107.1| - 3.7e-09 36.5 0.0 7.3e-08 32.2 0.0 2.2 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|312136770|ref|YP_004004107.1| - 9.7e-05 22.4 0.0 0.00021 21.3 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|312136770|ref|YP_004004107.1| - 0.00044 20.7 0.4 0.14 12.5 0.0 2.9 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|312136770|ref|YP_004004107.1| - 0.00051 20.4 0.2 0.18 12.1 0.0 2.5 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|312136770|ref|YP_004004107.1| - 0.0038 16.4 0.1 0.0061 15.7 0.1 1.3 1 0 0 1 1 1 1 Trehalose-phosphatase PTS_IIB PF02302.17 gi|312136770|ref|YP_004004107.1| - 1.1 10.0 5.3 6.1 7.6 0.3 3.1 2 1 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit HAD_2 PF13419.6 gi|312136770|ref|YP_004004107.1| - 1.4 9.0 9.3 0.63 10.1 1.7 3.3 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Glyco_hydro_38N PF01074.22 gi|312136771|ref|YP_004004108.1| - 2.7e-61 207.5 0.0 4.1e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|312136771|ref|YP_004004108.1| - 6.8e-19 68.8 0.0 1.5e-18 67.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Glyco_hydro38C2 PF17677.1 gi|312136771|ref|YP_004004108.1| - 1.1e-13 51.0 0.9 2.8e-13 49.8 0.9 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Alpha-mann_mid PF09261.11 gi|312136771|ref|YP_004004108.1| - 7e-12 45.3 0.0 1.7e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro_57 PF03065.15 gi|312136771|ref|YP_004004108.1| - 3.9e-07 29.6 1.3 1.5e-06 27.6 0.3 2.2 1 1 0 2 2 2 1 Glycosyl hydrolase family 57 PGM_PMM_I PF02878.16 gi|312136772|ref|YP_004004109.1| - 3.6e-43 146.6 0.1 1.3e-42 144.8 0.0 2.0 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|312136772|ref|YP_004004109.1| - 2e-31 108.7 0.9 5.2e-31 107.3 0.1 2.1 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|312136772|ref|YP_004004109.1| - 4.9e-29 100.8 0.0 1.1e-28 99.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|312136772|ref|YP_004004109.1| - 8e-11 42.0 0.0 4.4e-10 39.6 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_29 PF03141.16 gi|312136772|ref|YP_004004109.1| - 0.025 13.1 0.0 0.039 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF2862 PF11061.8 gi|312136772|ref|YP_004004109.1| - 0.084 12.7 3.2 5.5 6.9 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2862) ThiG PF05690.14 gi|312136772|ref|YP_004004109.1| - 0.085 12.2 0.1 0.22 10.8 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DUF2748 PF10871.8 gi|312136773|ref|YP_004004110.1| - 0.034 12.8 9.1 0.028 13.1 7.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2748) DUF2701 PF10857.8 gi|312136773|ref|YP_004004110.1| - 0.037 14.0 2.8 0.091 12.8 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2701) DUF4094 PF13334.6 gi|312136773|ref|YP_004004110.1| - 0.057 13.8 6.4 0.21 12.0 6.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4094) DUF4079 PF13301.6 gi|312136773|ref|YP_004004110.1| - 0.12 12.5 0.2 0.16 12.2 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) FIN1 PF17300.2 gi|312136773|ref|YP_004004110.1| - 0.13 11.8 16.2 0.072 12.6 6.9 2.1 1 1 1 2 2 2 0 Filaments in between nuclei protein-1 FtsQ PF03799.15 gi|312136773|ref|YP_004004110.1| - 0.25 12.2 3.0 0.33 11.8 3.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsQ Mod_r PF07200.13 gi|312136773|ref|YP_004004110.1| - 0.53 10.4 16.5 0.29 11.2 3.9 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Fzo_mitofusin PF04799.13 gi|312136773|ref|YP_004004110.1| - 0.81 9.2 13.0 0.087 12.4 7.5 2.0 1 1 2 3 3 3 0 fzo-like conserved region AAA_23 PF13476.6 gi|312136773|ref|YP_004004110.1| - 0.87 10.0 16.2 1 9.8 16.2 1.1 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.19 gi|312136773|ref|YP_004004110.1| - 1.6 6.6 11.0 2.1 6.2 11.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family COG2 PF06148.11 gi|312136773|ref|YP_004004110.1| - 1.9 8.6 11.6 5.7 7.0 11.6 1.8 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.15 gi|312136773|ref|YP_004004110.1| - 2.4 8.0 17.9 7.7 6.4 1.8 3.2 2 1 1 3 3 3 0 Septum formation initiator Latarcin PF10279.9 gi|312136773|ref|YP_004004110.1| - 3.1 8.3 9.3 5.4 7.5 7.4 2.2 1 1 0 1 1 1 0 Latarcin precursor E1-E2_ATPase PF00122.20 gi|312136773|ref|YP_004004110.1| - 3.7 7.0 8.7 0.24 10.9 1.9 2.0 1 1 1 2 2 2 0 E1-E2 ATPase TMPIT PF07851.13 gi|312136773|ref|YP_004004110.1| - 6.5 5.9 11.6 5.3 6.2 10.9 1.3 1 1 0 1 1 1 0 TMPIT-like protein DUF948 PF06103.11 gi|312136774|ref|YP_004004111.1| - 0.00059 20.0 3.3 0.048 13.9 3.2 2.7 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Phasin PF05597.11 gi|312136774|ref|YP_004004111.1| - 0.00098 19.1 2.0 0.0017 18.4 0.6 1.8 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF16 PF01519.16 gi|312136774|ref|YP_004004111.1| - 0.004 17.6 6.0 0.098 13.1 0.4 2.4 1 1 1 2 2 2 2 Protein of unknown function DUF16 Phage_Mu_Gam PF07352.12 gi|312136774|ref|YP_004004111.1| - 0.006 16.5 1.2 1.1 9.2 0.2 2.1 2 0 0 2 2 2 2 Bacteriophage Mu Gam like protein LIF_OSM PF01291.17 gi|312136774|ref|YP_004004111.1| - 0.0082 16.3 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 LIF / OSM family DUF4407 PF14362.6 gi|312136774|ref|YP_004004111.1| - 0.016 14.6 0.5 0.02 14.3 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FliD_C PF07195.12 gi|312136774|ref|YP_004004111.1| - 0.016 14.6 0.5 0.022 14.2 0.5 1.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Syntaxin_2 PF14523.6 gi|312136774|ref|YP_004004111.1| - 0.021 15.2 2.3 0.056 13.8 0.5 2.2 1 1 1 2 2 2 0 Syntaxin-like protein SatD PF16264.5 gi|312136774|ref|YP_004004111.1| - 0.03 13.9 0.3 0.039 13.5 0.3 1.2 1 0 0 1 1 1 0 SatD family (SatD) NTS_2 PF15448.6 gi|312136774|ref|YP_004004111.1| - 0.037 14.4 3.1 0.037 14.4 3.1 2.3 2 1 1 3 3 3 0 N-terminal segments of P. falciparum erythrocyte membrane protein Prefoldin_2 PF01920.20 gi|312136774|ref|YP_004004111.1| - 0.037 14.0 0.9 0.037 14.0 0.9 2.2 1 1 1 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.9 gi|312136774|ref|YP_004004111.1| - 0.051 13.9 0.7 0.12 12.7 0.5 1.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CLZ PF16526.5 gi|312136774|ref|YP_004004111.1| - 0.06 13.7 2.3 0.18 12.2 2.2 1.8 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels YkyA PF10368.9 gi|312136774|ref|YP_004004111.1| - 0.067 12.9 7.1 0.087 12.5 6.4 1.5 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein NPV_P10 PF05531.12 gi|312136774|ref|YP_004004111.1| - 0.09 13.2 0.2 0.82 10.2 0.0 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4446 PF14584.6 gi|312136774|ref|YP_004004111.1| - 0.1 12.6 3.2 2.2 8.3 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) kleA_kleC PF17383.2 gi|312136774|ref|YP_004004111.1| - 0.13 12.6 0.6 1.1 9.7 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A HSBP1 PF06825.12 gi|312136774|ref|YP_004004111.1| - 0.13 12.1 1.6 10 6.0 0.1 2.9 2 2 1 3 3 3 0 Heat shock factor binding protein 1 EMP24_GP25L PF01105.24 gi|312136774|ref|YP_004004111.1| - 0.22 11.4 2.9 0.42 10.5 2.8 1.6 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Fib_alpha PF08702.10 gi|312136774|ref|YP_004004111.1| - 0.24 11.6 2.1 0.41 10.8 2.1 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Matrilin_ccoil PF10393.9 gi|312136774|ref|YP_004004111.1| - 0.26 11.2 1.5 2.3 8.1 0.0 2.8 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin ABC_tran_CTD PF16326.5 gi|312136774|ref|YP_004004111.1| - 0.28 11.5 5.3 4.5 7.6 0.5 2.3 1 1 1 2 2 2 0 ABC transporter C-terminal domain tRNA_anti-codon PF01336.25 gi|312136775|ref|YP_004004112.1| - 1.9e-07 31.0 0.8 4.7e-07 29.7 0.2 1.9 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|312136775|ref|YP_004004112.1| - 1.4e-05 25.2 0.0 2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CcmE PF03100.15 gi|312136775|ref|YP_004004112.1| - 0.08 12.9 0.1 0.12 12.4 0.1 1.3 1 1 0 1 1 1 0 CcmE PMT_2 PF13231.6 gi|312136776|ref|YP_004004113.1| - 1e-08 35.5 23.8 1e-08 35.5 23.8 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.6 gi|312136776|ref|YP_004004113.1| - 2.7e-06 26.9 44.5 6.1e-06 25.8 44.5 1.5 1 1 0 1 1 1 1 EpsG family DUF460 PF04312.13 gi|312136776|ref|YP_004004113.1| - 0.046 13.4 0.1 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Gram_pos_anchor PF00746.21 gi|312136776|ref|YP_004004113.1| - 0.76 9.8 3.0 4.6 7.3 1.1 3.3 3 1 0 3 3 3 0 LPXTG cell wall anchor motif PTH2 PF01981.16 gi|312136777|ref|YP_004004114.1| - 2.1e-42 144.1 0.1 2.4e-42 143.9 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 ABC-3 PF00950.17 gi|312136778|ref|YP_004004115.1| - 7.9e-42 143.5 24.1 9.5e-42 143.3 24.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family DUF3792 PF12670.7 gi|312136778|ref|YP_004004115.1| - 0.003 17.7 6.9 0.003 17.7 6.9 4.2 2 1 3 5 5 5 2 Protein of unknown function (DUF3792) ABC-3 PF00950.17 gi|312136779|ref|YP_004004116.1| - 1.8e-55 188.2 28.5 2.1e-55 188.0 28.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|312136779|ref|YP_004004116.1| - 0.00019 20.6 34.4 0.00073 18.6 34.4 1.8 1 1 0 1 1 1 1 FecCD transport family MASE5 PF17178.4 gi|312136779|ref|YP_004004116.1| - 0.19 11.5 9.6 0.5 10.2 9.6 1.9 1 1 0 1 1 1 0 Membrane-associated sensor ABC_tran PF00005.27 gi|312136780|ref|YP_004004117.1| - 1e-33 116.7 0.0 1.5e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136780|ref|YP_004004117.1| - 1.6e-14 54.5 0.6 4.2e-07 30.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312136780|ref|YP_004004117.1| - 8.2e-07 28.7 0.0 0.012 15.0 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|312136780|ref|YP_004004117.1| - 2.4e-05 24.9 0.0 3.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|312136780|ref|YP_004004117.1| - 0.00053 18.9 0.2 0.12 11.1 0.2 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|312136780|ref|YP_004004117.1| - 0.00062 19.5 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|312136780|ref|YP_004004117.1| - 0.0062 16.3 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|312136780|ref|YP_004004117.1| - 0.0072 15.9 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|312136780|ref|YP_004004117.1| - 0.0073 16.2 0.2 0.015 15.2 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|312136780|ref|YP_004004117.1| - 0.012 14.8 0.9 0.38 9.9 0.2 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|312136780|ref|YP_004004117.1| - 0.018 15.5 0.4 2.2 8.7 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|312136780|ref|YP_004004117.1| - 0.029 13.1 0.4 1.7 7.2 0.2 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|312136780|ref|YP_004004117.1| - 0.061 13.2 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_15 PF13175.6 gi|312136780|ref|YP_004004117.1| - 0.062 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 gi|312136780|ref|YP_004004117.1| - 0.069 12.6 0.3 0.18 11.3 0.3 1.6 2 0 0 2 2 2 0 PhoH-like protein SbcCD_C PF13558.6 gi|312136780|ref|YP_004004117.1| - 0.078 13.2 0.0 1 9.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|312136780|ref|YP_004004117.1| - 0.094 13.1 0.1 0.24 11.8 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain HSM3_N PF18795.1 gi|312136780|ref|YP_004004117.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain AAA_18 PF13238.6 gi|312136780|ref|YP_004004117.1| - 0.13 12.8 0.2 0.81 10.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|312136780|ref|YP_004004117.1| - 0.14 11.7 0.4 0.24 11.0 0.4 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|312136780|ref|YP_004004117.1| - 0.16 12.2 0.3 1.7 8.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain Cyclin_N PF00134.23 gi|312136780|ref|YP_004004117.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Cyclin, N-terminal domain AAA_25 PF13481.6 gi|312136780|ref|YP_004004117.1| - 0.37 10.4 1.3 0.57 9.7 0.3 1.8 2 0 0 2 2 2 0 AAA domain ZnuA PF01297.17 gi|312136781|ref|YP_004004118.1| - 3.1e-31 108.7 0.2 3.9e-31 108.4 0.2 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Carboxyl_trans PF01039.22 gi|312136781|ref|YP_004004118.1| - 0.028 13.1 0.1 0.057 12.0 0.0 1.4 1 1 0 1 1 1 0 Carboxyl transferase domain PCMT PF01135.19 gi|312136781|ref|YP_004004118.1| - 0.079 12.7 0.1 0.16 11.7 0.1 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPR_17 PF13431.6 gi|312136781|ref|YP_004004118.1| - 0.088 13.2 0.3 0.18 12.2 0.3 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Lactamase_B PF00753.27 gi|312136782|ref|YP_004004119.1| - 1e-13 51.8 0.0 1.4e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312136782|ref|YP_004004119.1| - 4.1e-07 29.7 0.0 1.5e-06 27.9 0.0 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|312136782|ref|YP_004004119.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Redoxin PF08534.10 gi|312136782|ref|YP_004004119.1| - 0.03 14.0 0.2 0.066 12.9 0.2 1.5 1 0 0 1 1 1 0 Redoxin AAA_19 PF13245.6 gi|312136783|ref|YP_004004120.1| - 0.00064 20.1 0.0 0.0021 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|312136783|ref|YP_004004120.1| - 0.0016 18.9 0.0 0.0035 17.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|312136783|ref|YP_004004120.1| - 0.0042 16.8 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4298 PF14131.6 gi|312136783|ref|YP_004004120.1| - 0.012 15.5 1.2 0.034 14.1 1.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) NB-ARC PF00931.22 gi|312136783|ref|YP_004004120.1| - 0.013 14.7 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|312136783|ref|YP_004004120.1| - 0.015 15.3 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 gi|312136783|ref|YP_004004120.1| - 0.027 13.5 0.0 0.069 12.1 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|312136783|ref|YP_004004120.1| - 0.043 13.1 0.0 0.091 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.14 gi|312136783|ref|YP_004004120.1| - 0.065 12.5 0.0 0.23 10.7 0.0 1.6 1 1 0 2 2 2 0 KAP family P-loop domain Thymidylate_kin PF02223.17 gi|312136783|ref|YP_004004120.1| - 0.12 12.0 2.1 5.8 6.5 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase ABC_tran PF00005.27 gi|312136783|ref|YP_004004120.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Methyltransf_31 PF13847.6 gi|312136784|ref|YP_004004121.1| - 3.6e-19 69.1 0.0 4.8e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312136784|ref|YP_004004121.1| - 5.1e-19 68.8 0.0 7.6e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312136784|ref|YP_004004121.1| - 2.3e-18 66.6 0.0 3.7e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|312136784|ref|YP_004004121.1| - 1.6e-13 51.2 0.0 2.5e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312136784|ref|YP_004004121.1| - 3.6e-12 46.1 0.0 5.7e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|312136784|ref|YP_004004121.1| - 6.8e-12 45.5 0.0 8.9e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|312136784|ref|YP_004004121.1| - 2.8e-09 36.7 0.0 4.5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|312136784|ref|YP_004004121.1| - 9e-09 35.1 0.0 1.3e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|312136784|ref|YP_004004121.1| - 4.2e-06 26.8 0.0 6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|312136784|ref|YP_004004121.1| - 2.4e-05 24.3 0.0 3.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|312136784|ref|YP_004004121.1| - 9.9e-05 21.5 0.0 0.00013 21.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|312136784|ref|YP_004004121.1| - 0.00012 21.8 0.0 0.00017 21.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.15 gi|312136784|ref|YP_004004121.1| - 0.00028 20.2 0.0 0.00041 19.7 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|312136784|ref|YP_004004121.1| - 0.001 18.9 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF43 PF01861.16 gi|312136784|ref|YP_004004121.1| - 0.0024 17.2 0.0 0.0044 16.3 0.0 1.4 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_16 PF10294.9 gi|312136784|ref|YP_004004121.1| - 0.0029 17.3 0.1 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 Lysine methyltransferase TehB PF03848.14 gi|312136784|ref|YP_004004121.1| - 0.0047 16.3 0.4 0.013 14.9 0.4 1.6 1 1 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|312136784|ref|YP_004004121.1| - 0.0064 16.1 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW AdoMet_MTase PF07757.13 gi|312136784|ref|YP_004004121.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase CMAS PF02353.20 gi|312136784|ref|YP_004004121.1| - 0.032 13.5 0.0 0.048 12.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheR PF01739.18 gi|312136784|ref|YP_004004121.1| - 0.086 12.3 0.3 7.6 6.0 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF5040 PF16443.5 gi|312136784|ref|YP_004004121.1| - 0.094 12.1 0.2 0.15 11.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5040) N2227 PF07942.12 gi|312136784|ref|YP_004004121.1| - 0.096 11.9 0.0 0.32 10.1 0.0 1.7 1 1 1 2 2 2 0 N2227-like protein GIDA PF01134.22 gi|312136785|ref|YP_004004122.1| - 9.4e-33 113.8 0.0 1.4e-21 77.1 0.0 2.2 1 1 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|312136785|ref|YP_004004122.1| - 1.3e-17 64.4 0.1 1.8e-17 63.8 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|312136785|ref|YP_004004122.1| - 1.5e-11 44.1 2.0 2.1e-07 30.5 0.4 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|312136785|ref|YP_004004122.1| - 8e-10 39.2 2.2 2.8e-07 31.0 0.2 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|312136785|ref|YP_004004122.1| - 2.5e-07 29.9 2.3 0.0054 15.6 1.6 2.2 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|312136785|ref|YP_004004122.1| - 3e-07 30.3 2.0 5.9e-05 22.8 1.8 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|312136785|ref|YP_004004122.1| - 1.2e-06 28.6 0.3 2.5e-06 27.6 0.3 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|312136785|ref|YP_004004122.1| - 1.9e-06 27.2 5.9 0.00044 19.4 3.4 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|312136785|ref|YP_004004122.1| - 5.9e-06 25.2 1.7 0.00016 20.5 0.5 2.8 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|312136785|ref|YP_004004122.1| - 3.6e-05 23.2 0.8 6.2e-05 22.4 0.8 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|312136785|ref|YP_004004122.1| - 0.00015 21.1 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|312136785|ref|YP_004004122.1| - 0.00027 20.1 0.1 0.00056 19.1 0.1 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|312136785|ref|YP_004004122.1| - 0.04 13.2 0.3 0.31 10.3 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|312136785|ref|YP_004004122.1| - 0.054 12.7 4.1 0.38 9.9 4.1 2.4 1 1 0 1 1 1 0 Thi4 family Fer2_3 PF13085.6 gi|312136786|ref|YP_004004123.1| - 0.00038 20.5 1.2 0.0024 17.8 0.7 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_8 PF08022.12 gi|312136786|ref|YP_004004123.1| - 0.037 14.1 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 FAD-binding domain DUF4263 PF14082.6 gi|312136786|ref|YP_004004123.1| - 0.18 12.1 2.4 1.2 9.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4263) MFS_1 PF07690.16 gi|312136787|ref|YP_004004124.1| - 5.9e-51 173.5 48.7 5.9e-51 173.5 48.7 1.7 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|312136787|ref|YP_004004124.1| - 1.7e-09 36.6 5.3 1.7e-09 36.6 5.3 1.9 2 0 0 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|312136787|ref|YP_004004124.1| - 5.5e-08 32.1 17.6 5.5e-08 32.1 17.6 4.1 2 2 2 4 4 4 1 Sugar (and other) transporter Baculo_11_kDa PF06143.11 gi|312136787|ref|YP_004004124.1| - 0.71 9.5 3.7 1.3 8.7 1.3 2.7 2 0 0 2 2 2 0 Baculovirus 11 kDa family MFS_1_like PF12832.7 gi|312136787|ref|YP_004004124.1| - 1 8.1 47.7 0.018 13.9 10.3 3.5 1 1 2 3 3 3 0 MFS_1 like family UPF0542 PF15086.6 gi|312136787|ref|YP_004004124.1| - 2.4 8.1 4.9 1.8 8.6 0.1 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0542 Methyltransf_2 PF00891.18 gi|312136788|ref|YP_004004125.1| - 1.1e-15 57.5 0.0 6.7e-15 55.0 0.0 2.0 2 0 0 2 2 2 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|312136788|ref|YP_004004125.1| - 6.9e-12 45.2 0.0 1.3e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain MTS PF05175.14 gi|312136788|ref|YP_004004125.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|312136788|ref|YP_004004125.1| - 0.015 16.0 0.0 0.04 14.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|312136788|ref|YP_004004125.1| - 0.029 13.7 0.0 0.066 12.5 0.0 1.6 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.6 gi|312136788|ref|YP_004004125.1| - 0.064 14.0 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|312136788|ref|YP_004004125.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Lysine methyltransferase SPASM PF13186.6 gi|312136789|ref|YP_004004126.1| - 2e-13 50.6 0.6 4.6e-13 49.5 0.6 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|312136789|ref|YP_004004126.1| - 1.1e-11 45.3 0.0 2e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312136789|ref|YP_004004126.1| - 3.2e-05 24.2 0.1 6.7e-05 23.2 0.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312136789|ref|YP_004004126.1| - 8e-05 22.8 0.4 0.00015 21.8 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain TPR_1 PF00515.28 gi|312136790|ref|YP_004004127.1| - 1.6e-35 119.5 32.5 1.1e-06 28.1 0.3 11.1 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|312136790|ref|YP_004004127.1| - 6.7e-31 103.9 28.8 3.9e-05 23.5 0.2 11.1 11 1 0 11 11 11 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|312136790|ref|YP_004004127.1| - 2.9e-24 85.2 13.8 7.8e-07 29.3 0.3 6.3 5 2 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|312136790|ref|YP_004004127.1| - 2.5e-21 74.0 32.8 5.3e-05 23.1 0.1 10.4 11 1 0 11 11 10 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|312136790|ref|YP_004004127.1| - 1.2e-16 59.9 2.9 0.06 14.2 0.3 7.7 6 1 2 8 8 7 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|312136790|ref|YP_004004127.1| - 1.2e-14 53.2 13.6 0.039 14.0 0.1 8.2 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|312136790|ref|YP_004004127.1| - 8e-12 45.5 4.7 0.0028 18.1 0.0 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|312136790|ref|YP_004004127.1| - 2.4e-11 44.1 5.3 0.022 15.4 0.1 6.1 4 2 2 6 6 6 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|312136790|ref|YP_004004127.1| - 5.9e-11 41.9 23.5 0.0082 15.8 0.1 8.3 9 2 2 11 11 11 5 TPR repeat TPR_6 PF13174.6 gi|312136790|ref|YP_004004127.1| - 1.2e-10 41.3 13.9 0.19 12.4 0.0 8.3 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|312136790|ref|YP_004004127.1| - 7.9e-09 35.6 1.5 0.0035 17.4 0.8 3.8 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|312136790|ref|YP_004004127.1| - 1.3e-07 31.2 11.1 0.28 11.1 0.0 6.9 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|312136790|ref|YP_004004127.1| - 1.2e-06 28.4 25.9 0.57 10.7 0.0 8.9 10 2 0 10 10 9 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|312136790|ref|YP_004004127.1| - 1.8e-05 24.3 1.0 1.5 8.2 0.0 3.6 1 1 2 3 3 3 3 MalT-like TPR region SHNi-TPR PF10516.9 gi|312136790|ref|YP_004004127.1| - 0.006 16.0 7.2 15 5.1 0.1 5.9 6 0 0 6 6 6 0 SHNi-TPR ANAPC3 PF12895.7 gi|312136790|ref|YP_004004127.1| - 0.0073 16.5 17.4 0.037 14.3 0.4 5.4 2 1 4 6 6 5 2 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|312136790|ref|YP_004004127.1| - 0.017 15.2 7.5 0.25 11.4 2.7 3.8 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 RPN7 PF10602.9 gi|312136790|ref|YP_004004127.1| - 0.019 14.7 7.6 0.14 11.8 0.2 4.0 3 2 2 5 5 5 0 26S proteasome subunit RPN7 Ubiq-assoc PF09145.10 gi|312136790|ref|YP_004004127.1| - 0.67 10.0 5.7 4.5 7.4 0.2 4.3 4 0 0 4 4 4 0 Ubiquitin-associated PPR PF01535.20 gi|312136790|ref|YP_004004127.1| - 1.3 9.4 6.9 37 4.9 0.0 5.3 6 0 0 6 6 6 0 PPR repeat DUF4248 PF14053.6 gi|312136790|ref|YP_004004127.1| - 4.1 7.5 5.9 26 4.9 0.0 4.4 5 1 1 6 6 6 0 Domain of unknown function (DUF4248) T_cell_tran_alt PF15128.6 gi|312136791|ref|YP_004004128.1| - 0.15 11.9 0.3 0.24 11.2 0.3 1.4 1 0 0 1 1 1 0 T-cell leukemia translocation-altered TIM21 PF08294.11 gi|312136791|ref|YP_004004128.1| - 0.46 10.4 1.7 7.8 6.4 0.1 2.2 2 0 0 2 2 2 0 TIM21 YqhR PF11085.8 gi|312136791|ref|YP_004004128.1| - 9.1 6.2 11.5 1 9.3 7.0 1.7 1 1 1 2 2 2 0 Conserved membrane protein YqhR PIG-F PF06699.11 gi|312136792|ref|YP_004004129.1| - 0.29 11.3 1.3 1.3 9.1 0.6 2.0 2 0 0 2 2 2 0 GPI biosynthesis protein family Pig-F Zn_dep_PLPC PF00882.18 gi|312136793|ref|YP_004004130.1| - 1.1e-18 67.9 1.6 1.4e-18 67.6 1.6 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|312136793|ref|YP_004004130.1| - 0.16 11.7 0.0 3 7.5 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) PrmA PF06325.13 gi|312136794|ref|YP_004004131.1| - 4.4e-07 29.6 0.0 8.1e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|312136794|ref|YP_004004131.1| - 0.00013 21.5 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|312136794|ref|YP_004004131.1| - 0.0008 18.7 0.0 0.001 18.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|312136794|ref|YP_004004131.1| - 0.0013 19.4 0.0 0.0038 17.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|312136794|ref|YP_004004131.1| - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|312136794|ref|YP_004004131.1| - 0.0093 15.7 0.0 0.019 14.7 0.0 1.6 1 1 0 1 1 1 1 Met-10+ like-protein SepF PF04472.12 gi|312136794|ref|YP_004004131.1| - 0.11 12.8 0.0 0.34 11.2 0.0 1.8 2 0 0 2 2 2 0 Cell division protein SepF PALP PF00291.25 gi|312136795|ref|YP_004004132.1| - 7e-44 150.4 0.0 9e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Fae PF08714.11 gi|312136796|ref|YP_004004133.1| - 1.5e-68 229.8 0.1 2.5e-68 229.0 0.1 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|312136796|ref|YP_004004133.1| - 2.7e-25 89.3 1.2 2.7e-25 89.3 1.2 1.5 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PRAI PF00697.22 gi|312136796|ref|YP_004004133.1| - 0.0001 22.2 0.4 0.00054 19.8 0.3 2.2 1 1 1 2 2 2 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Ribul_P_3_epim PF00834.19 gi|312136796|ref|YP_004004133.1| - 0.00015 21.2 1.2 0.00027 20.4 1.2 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|312136796|ref|YP_004004133.1| - 0.001 18.2 0.7 0.0021 17.2 0.6 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|312136796|ref|YP_004004133.1| - 0.0011 18.3 0.3 0.0025 17.2 0.3 1.6 1 0 0 1 1 1 1 Thiamine monophosphate synthase QRPTase_C PF01729.19 gi|312136796|ref|YP_004004133.1| - 0.0011 18.7 1.0 0.0027 17.5 0.4 1.9 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.17 gi|312136796|ref|YP_004004133.1| - 0.0043 16.5 1.9 0.46 9.9 0.3 2.3 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.20 gi|312136796|ref|YP_004004133.1| - 0.025 13.4 1.2 0.49 9.2 0.2 2.4 2 0 0 2 2 2 0 Tryptophan synthase alpha chain NanE PF04131.14 gi|312136796|ref|YP_004004133.1| - 0.04 13.1 0.7 0.12 11.6 0.7 1.9 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Sld7_C PF18596.1 gi|312136796|ref|YP_004004133.1| - 0.15 12.2 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 Sld7 C-terminal domain UvrB PF12344.8 gi|312136796|ref|YP_004004133.1| - 0.18 11.7 0.6 20 5.1 0.1 3.0 2 0 0 2 2 2 0 Ultra-violet resistance protein B FMN_red PF03358.15 gi|312136797|ref|YP_004004134.1| - 7.2e-32 110.3 0.0 8.6e-32 110.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|312136797|ref|YP_004004134.1| - 1.9e-05 24.4 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold AP_endonuc_2 PF01261.24 gi|312136798|ref|YP_004004135.1| - 1.6e-21 76.7 0.0 2e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DeoC PF01791.9 gi|312136798|ref|YP_004004135.1| - 0.13 11.9 0.3 0.67 9.5 0.2 2.0 1 1 1 2 2 2 0 DeoC/LacD family aldolase Sec61_beta PF03911.16 gi|312136799|ref|YP_004004136.1| - 3e-14 52.7 0.0 3.4e-14 52.6 0.0 1.0 1 0 0 1 1 1 1 Sec61beta family Lyase_1 PF00206.20 gi|312136800|ref|YP_004004137.1| - 4.4e-54 184.0 0.3 6.6e-54 183.4 0.3 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|312136800|ref|YP_004004137.1| - 1.3e-20 73.7 0.0 4.4e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|312136800|ref|YP_004004137.1| - 0.00075 19.6 0.6 0.0035 17.4 0.0 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal VHS PF00790.19 gi|312136800|ref|YP_004004137.1| - 0.0042 16.9 0.6 0.014 15.2 0.6 1.8 1 1 0 1 1 1 1 VHS domain CPBP PF02517.16 gi|312136801|ref|YP_004004138.1| - 2.3e-11 43.9 2.5 2.3e-11 43.9 2.5 2.8 2 1 1 3 3 3 1 CPBP intramembrane metalloprotease TctA PF01970.16 gi|312136803|ref|YP_004004140.1| - 2.7e-56 191.1 43.2 3.1e-56 190.9 43.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family TMEM191C PF15194.6 gi|312136803|ref|YP_004004140.1| - 1.4 9.1 6.9 0.31 11.2 2.5 2.1 1 1 1 2 2 2 0 TMEM191C family EF1_GNE PF00736.19 gi|312136804|ref|YP_004004141.1| - 1.1e-18 67.1 0.8 1.3e-18 67.0 0.8 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain VASP_tetra PF08776.11 gi|312136804|ref|YP_004004141.1| - 0.11 12.0 0.2 0.11 12.0 0.2 1.7 2 0 0 2 2 2 0 VASP tetramerisation domain DUF1610 PF07754.11 gi|312136805|ref|YP_004004142.1| - 1.5e-05 24.9 0.4 1.5e-05 24.9 0.4 2.1 2 1 1 3 3 3 1 Domain of unknown function (DUF1610) tRNA-synt_1g PF09334.11 gi|312136805|ref|YP_004004142.1| - 0.025 13.4 3.2 0.025 13.3 3.2 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) MRNIP PF15749.5 gi|312136805|ref|YP_004004142.1| - 0.1 13.3 0.5 0.1 13.3 0.5 2.0 1 1 1 2 2 2 0 MRN-interacting protein Rhodanese_C PF12368.8 gi|312136805|ref|YP_004004142.1| - 0.11 12.9 8.8 0.13 12.6 8.8 1.2 1 0 0 1 1 1 0 Rhodanase C-terminal DUF3797 PF12677.7 gi|312136805|ref|YP_004004142.1| - 0.89 9.5 11.4 6.3 6.8 10.3 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zf-Sec23_Sec24 PF04810.15 gi|312136805|ref|YP_004004142.1| - 0.98 9.5 15.5 0.34 11.0 2.5 3.3 2 2 0 3 3 3 0 Sec23/Sec24 zinc finger Sgf11 PF08209.11 gi|312136805|ref|YP_004004142.1| - 1 9.0 11.0 4.4 6.9 0.4 3.3 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) AA_kinase PF00696.28 gi|312136806|ref|YP_004004143.1| - 1.2e-17 64.3 0.0 1.2e-15 57.8 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family Aconitase PF00330.20 gi|312136807|ref|YP_004004144.1| - 6.4e-99 332.0 7.9 7.5e-97 325.2 7.9 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|312136807|ref|YP_004004144.1| - 0.00084 18.2 0.1 0.0015 17.3 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|312136808|ref|YP_004004145.1| - 9.3e-22 77.8 0.2 4.7e-20 72.3 0.5 2.2 1 1 1 2 2 2 2 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|312136808|ref|YP_004004145.1| - 2.9e-05 23.8 0.2 0.00088 19.0 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|312136809|ref|YP_004004146.1| - 6.2e-105 351.2 0.1 7.6e-105 350.9 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Dicty_CAD PF05720.12 gi|312136809|ref|YP_004004146.1| - 0.0063 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Cell-cell adhesion domain Aminotran_5 PF00266.19 gi|312136810|ref|YP_004004147.1| - 1.7e-125 418.8 0.0 2e-125 418.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|312136810|ref|YP_004004147.1| - 1.2e-13 51.0 0.4 8e-12 45.0 0.2 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|312136810|ref|YP_004004147.1| - 2.8e-13 49.9 0.1 4.5e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|312136810|ref|YP_004004147.1| - 2.5e-07 29.6 0.1 1.1e-06 27.5 0.2 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SepSecS PF05889.13 gi|312136810|ref|YP_004004147.1| - 2.2e-06 26.6 0.4 3.7e-06 25.9 0.1 1.5 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|312136810|ref|YP_004004147.1| - 5.4e-05 22.6 0.1 0.00016 21.1 0.0 1.7 1 1 1 2 2 2 1 Beta-eliminating lyase GDC-P PF02347.16 gi|312136810|ref|YP_004004147.1| - 0.021 13.6 0.4 0.033 13.0 0.4 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein DMRL_synthase PF00885.19 gi|312136811|ref|YP_004004148.1| - 9.4e-37 126.0 0.6 1e-36 125.8 0.6 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AAA_lid_9 PF17871.1 gi|312136811|ref|YP_004004148.1| - 0.033 14.1 0.1 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA lid domain DUF1743 PF08489.11 gi|312136812|ref|YP_004004149.1| - 1.2e-10 41.4 0.8 2e-07 31.0 0.2 3.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) UPF0058 PF01893.16 gi|312136813|ref|YP_004004150.1| - 1.5e-32 111.7 1.1 1.7e-32 111.5 1.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 ArsD PF06953.11 gi|312136813|ref|YP_004004150.1| - 0.047 14.0 0.0 0.084 13.2 0.0 1.4 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Histidinol_dh PF00815.20 gi|312136814|ref|YP_004004151.1| - 4e-167 556.4 0.2 4.6e-167 556.2 0.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase MbeB_N PF04837.12 gi|312136814|ref|YP_004004151.1| - 9.6 6.6 6.6 0.98 9.8 0.1 2.6 3 0 0 3 3 3 0 MbeB-like, N-term conserved region tRNA-synt_2 PF00152.20 gi|312136815|ref|YP_004004152.1| - 7.6e-98 327.5 0.4 9.3e-98 327.2 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|312136815|ref|YP_004004152.1| - 3.3e-13 49.4 0.2 7.1e-13 48.3 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|312136815|ref|YP_004004152.1| - 0.00032 20.2 0.7 0.029 13.8 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) CbiC PF02570.15 gi|312136816|ref|YP_004004153.1| - 6.7e-63 211.9 0.6 7.6e-63 211.7 0.6 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase DUF4065 PF13274.6 gi|312136816|ref|YP_004004153.1| - 0.014 16.2 0.2 0.037 14.9 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) Membralin PF09746.9 gi|312136816|ref|YP_004004153.1| - 0.018 14.1 0.3 0.022 13.8 0.3 1.1 1 0 0 1 1 1 0 Tumour-associated protein Peripla_BP_4 PF13407.6 gi|312136816|ref|YP_004004153.1| - 0.023 14.3 0.1 0.29 10.7 0.1 2.1 1 1 1 2 2 2 0 Periplasmic binding protein domain DUF434 PF04256.12 gi|312136816|ref|YP_004004153.1| - 0.12 12.1 0.0 0.62 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF434) Aminotran_3 PF00202.21 gi|312136817|ref|YP_004004154.1| - 8.4e-76 255.2 0.0 1.1e-75 254.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|312136817|ref|YP_004004154.1| - 0.0007 18.9 0.0 0.00094 18.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1154 PF06631.11 gi|312136817|ref|YP_004004154.1| - 0.01 15.9 1.9 0.072 13.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1154) PTA_PTB PF01515.19 gi|312136818|ref|YP_004004155.1| - 2.2e-07 30.5 0.0 0.0032 16.8 0.0 2.3 2 1 0 2 2 2 2 Phosphate acetyl/butaryl transferase DUF4894 PF16235.5 gi|312136818|ref|YP_004004155.1| - 0.056 13.8 0.1 0.1 13.0 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4894) DUF1471 PF07338.13 gi|312136818|ref|YP_004004155.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Prenyltransf PF01255.19 gi|312136819|ref|YP_004004156.1| - 2e-85 285.9 0.1 2.3e-85 285.7 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase PSD2 PF07624.11 gi|312136819|ref|YP_004004156.1| - 0.015 15.0 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1585) Dpoe2NT PF12213.8 gi|312136819|ref|YP_004004156.1| - 0.021 15.1 0.3 0.058 13.7 0.3 1.8 1 0 0 1 1 1 0 DNA polymerases epsilon N terminal RecG_N PF17190.4 gi|312136819|ref|YP_004004156.1| - 0.068 13.9 7.8 0.26 12.0 0.3 2.9 3 1 0 3 3 3 0 RecG N-terminal helical domain YtxH PF12732.7 gi|312136819|ref|YP_004004156.1| - 1.8 9.1 5.2 3.8 8.1 1.4 2.2 2 0 0 2 2 2 0 YtxH-like protein Seryl_tRNA_N PF02403.22 gi|312136819|ref|YP_004004156.1| - 4.2 7.6 10.4 9.4 6.5 9.8 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TatD_DNase PF01026.21 gi|312136820|ref|YP_004004157.1| - 5.3e-75 252.1 0.1 6e-75 251.9 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase DUF2533 PF10752.9 gi|312136820|ref|YP_004004157.1| - 0.011 16.2 2.9 1.4 9.4 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2533) RibD_C PF01872.17 gi|312136821|ref|YP_004004158.1| - 7e-66 221.9 0.2 7.9e-66 221.7 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PHP PF02811.19 gi|312136822|ref|YP_004004159.1| - 2.1e-09 37.9 0.1 2.6e-09 37.6 0.1 1.4 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|312136822|ref|YP_004004159.1| - 1e-06 28.4 0.0 2e-05 24.2 0.0 2.2 1 1 0 1 1 1 1 RNase P subunit p30 PHP_C PF13263.6 gi|312136822|ref|YP_004004159.1| - 5.6e-05 22.8 0.0 0.00014 21.6 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PEP-utilizers PF00391.23 gi|312136822|ref|YP_004004159.1| - 0.13 12.0 0.2 0.48 10.2 0.1 1.9 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain GHMP_kinases_N PF00288.26 gi|312136823|ref|YP_004004160.1| - 1.8e-06 28.0 0.2 3.3e-06 27.2 0.2 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|312136823|ref|YP_004004160.1| - 0.0041 17.5 0.3 0.012 15.9 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Tir_receptor_C PF07489.11 gi|312136823|ref|YP_004004160.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus DeoC PF01791.9 gi|312136824|ref|YP_004004161.1| - 1.1e-68 231.3 0.1 1.3e-68 231.1 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|312136824|ref|YP_004004161.1| - 1.6e-05 24.6 0.2 2.3e-05 24.1 0.2 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PucR PF07905.11 gi|312136824|ref|YP_004004161.1| - 0.0021 18.4 0.1 0.33 11.3 0.0 2.5 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family TMP-TENI PF02581.17 gi|312136824|ref|YP_004004161.1| - 0.003 16.9 0.0 2.5 7.4 0.1 2.6 2 0 0 2 2 2 2 Thiamine monophosphate synthase DUF561 PF04481.12 gi|312136824|ref|YP_004004161.1| - 0.006 15.8 0.1 0.027 13.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|312136824|ref|YP_004004161.1| - 0.06 12.4 0.1 19 4.2 0.0 3.0 2 1 1 3 3 3 0 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 gi|312136824|ref|YP_004004161.1| - 0.061 12.8 1.0 12 5.2 0.2 2.8 1 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase CoA_binding_2 PF13380.6 gi|312136824|ref|YP_004004161.1| - 0.087 13.3 0.5 17 5.9 0.1 3.1 3 1 0 3 3 3 0 CoA binding domain ThiG PF05690.14 gi|312136824|ref|YP_004004161.1| - 0.14 11.5 3.0 0.19 11.0 0.4 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG HBS1_N PF08938.10 gi|312136824|ref|YP_004004161.1| - 0.15 12.4 0.0 0.34 11.2 0.0 1.6 1 0 0 1 1 1 0 HBS1 N-terminus DHQS PF01959.16 gi|312136825|ref|YP_004004162.1| - 1.7e-151 504.1 4.2 1.9e-151 503.9 4.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|312136825|ref|YP_004004162.1| - 0.0038 16.8 0.0 0.19 11.2 0.0 2.3 2 0 0 2 2 2 1 Hint module TRAM PF01938.20 gi|312136825|ref|YP_004004162.1| - 0.016 15.2 0.2 0.16 12.0 0.0 2.7 2 0 0 2 2 2 0 TRAM domain OapA PF04225.12 gi|312136825|ref|YP_004004162.1| - 0.02 15.0 0.1 3.4 7.8 0.0 2.7 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain Cas6_N PF17952.1 gi|312136825|ref|YP_004004162.1| - 0.19 12.0 1.3 1.6 9.0 0.0 2.9 4 0 0 4 4 4 0 Cas6 N-terminal domain DUF104 PF01954.16 gi|312136825|ref|YP_004004162.1| - 1.3 9.5 5.5 0.31 11.5 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function DUF104 LigT_PEase PF02834.16 gi|312136826|ref|YP_004004163.1| - 1.4e-32 111.7 0.1 1.2e-18 67.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|312136826|ref|YP_004004163.1| - 1.4e-15 57.5 0.0 1.8e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|312136826|ref|YP_004004163.1| - 2.4e-10 40.6 1.5 3.7e-10 40.1 1.5 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain PhaP_Bmeg PF09602.10 gi|312136826|ref|YP_004004163.1| - 0.047 13.6 0.3 0.097 12.6 0.3 1.5 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) tRNA_NucTransf2 PF09249.11 gi|312136827|ref|YP_004004164.1| - 3e-45 153.1 0.1 5.6e-45 152.2 0.1 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|312136827|ref|YP_004004164.1| - 5e-17 62.0 1.5 1.4e-16 60.5 0.0 2.5 3 0 0 3 3 3 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|312136827|ref|YP_004004164.1| - 3.1e-05 24.2 0.0 0.00019 21.7 0.0 2.3 2 1 0 2 2 2 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|312136827|ref|YP_004004164.1| - 0.031 14.3 0.1 0.18 11.9 0.0 2.3 3 0 0 3 3 3 0 Polymerase beta, Nucleotidyltransferase DNA_primase_S PF01896.19 gi|312136828|ref|YP_004004165.1| - 4.3e-24 85.5 1.3 7.6e-24 84.7 1.3 1.4 1 0 0 1 1 1 1 DNA primase small subunit DNA_primase_lrg PF04104.14 gi|312136829|ref|YP_004004166.1| - 1.7e-17 63.7 0.3 2.6e-16 59.8 0.3 2.3 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit tRNA-synt_1g PF09334.11 gi|312136830|ref|YP_004004167.1| - 9.8e-173 574.4 1.1 1.3e-172 573.9 1.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|312136830|ref|YP_004004167.1| - 9.4e-21 73.7 9.3 7e-10 37.8 0.2 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|312136830|ref|YP_004004167.1| - 1.3e-14 54.3 0.1 2.4e-06 27.1 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|312136830|ref|YP_004004167.1| - 0.00026 20.0 0.8 0.0024 16.9 1.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|312136830|ref|YP_004004167.1| - 0.0018 17.3 0.0 0.0042 16.1 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (R) zinc-ribbons_6 PF07191.12 gi|312136830|ref|YP_004004167.1| - 0.0065 16.4 4.2 0.015 15.3 4.2 1.6 1 0 0 1 1 1 1 zinc-ribbons PHF5 PF03660.14 gi|312136830|ref|YP_004004167.1| - 0.67 10.2 5.0 0.25 11.5 0.8 2.2 1 1 1 2 2 2 0 PHF5-like protein HypA PF01155.19 gi|312136830|ref|YP_004004167.1| - 0.75 9.8 4.1 2.4 8.2 0.3 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|312136830|ref|YP_004004167.1| - 2.6 8.2 7.4 5.6 7.1 5.4 2.2 1 1 1 2 2 2 0 Double zinc ribbon DUF530 PF04409.12 gi|312136831|ref|YP_004004168.1| - 7.3e-217 720.8 36.9 8.2e-217 720.7 36.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF530) MutS_III PF05192.18 gi|312136831|ref|YP_004004168.1| - 0.0038 17.5 3.6 0.057 13.6 0.3 2.4 2 0 0 2 2 2 2 MutS domain III AIP3 PF03915.13 gi|312136831|ref|YP_004004168.1| - 0.006 15.7 4.0 0.006 15.7 4.0 2.2 2 1 0 2 2 2 1 Actin interacting protein 3 Snapin_Pallidin PF14712.6 gi|312136831|ref|YP_004004168.1| - 0.1 13.1 0.9 0.55 10.7 0.9 2.3 1 0 0 1 1 1 0 Snapin/Pallidin HTH_23 PF13384.6 gi|312136832|ref|YP_004004169.1| - 1.1e-12 47.4 0.0 1.4e-06 27.9 0.1 2.6 3 0 0 3 3 2 2 Homeodomain-like domain HTH_7 PF02796.15 gi|312136832|ref|YP_004004169.1| - 1.1e-11 44.6 6.0 1.2e-05 25.3 0.2 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|312136832|ref|YP_004004169.1| - 5.4e-07 29.7 0.7 0.0039 17.3 0.0 3.0 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 gi|312136832|ref|YP_004004169.1| - 7.8e-07 29.0 0.5 0.49 10.5 0.0 3.3 2 1 1 3 3 3 2 Winged helix-turn helix GerE PF00196.19 gi|312136832|ref|YP_004004169.1| - 2.1e-06 27.2 0.3 0.0091 15.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_32 PF13565.6 gi|312136832|ref|YP_004004169.1| - 1.6e-05 25.4 0.6 0.14 12.8 0.0 2.6 1 1 2 3 3 3 2 Homeodomain-like domain HTH_38 PF13936.6 gi|312136832|ref|YP_004004169.1| - 2.2e-05 24.1 0.0 0.14 12.0 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|312136832|ref|YP_004004169.1| - 3e-05 23.6 0.0 0.21 11.3 0.0 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 TrmB PF01978.19 gi|312136832|ref|YP_004004169.1| - 3.3e-05 23.7 2.5 0.054 13.4 0.1 3.1 2 1 1 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|312136832|ref|YP_004004169.1| - 9.2e-05 22.3 0.4 0.58 10.1 0.0 3.0 3 0 0 3 3 3 2 HTH domain HTH_40 PF14493.6 gi|312136832|ref|YP_004004169.1| - 0.00035 21.0 0.3 1.6 9.3 0.0 2.9 3 0 0 3 3 3 2 Helix-turn-helix domain DUF1699 PF08004.11 gi|312136832|ref|YP_004004169.1| - 0.00089 18.9 0.5 0.038 13.7 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1699) TnsD PF15978.5 gi|312136832|ref|YP_004004169.1| - 0.0013 17.8 1.1 0.29 10.1 0.4 2.3 1 1 1 2 2 2 2 Tn7-like transposition protein D HTH_24 PF13412.6 gi|312136832|ref|YP_004004169.1| - 0.0017 17.9 0.7 0.52 9.9 0.0 3.9 4 1 0 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_Tnp_IS630 PF01710.16 gi|312136832|ref|YP_004004169.1| - 0.0017 18.4 0.2 0.52 10.4 0.1 2.4 1 1 1 2 2 2 1 Transposase MerR_1 PF13411.6 gi|312136832|ref|YP_004004169.1| - 0.0017 18.4 6.2 0.016 15.3 0.4 3.6 3 2 0 3 3 3 1 MerR HTH family regulatory protein AT_hook PF02178.19 gi|312136832|ref|YP_004004169.1| - 0.0022 17.7 4.5 0.011 15.6 4.5 2.3 1 0 0 1 1 1 1 AT hook motif HTH_3 PF01381.22 gi|312136832|ref|YP_004004169.1| - 0.0067 16.5 0.3 1.8 8.7 0.1 3.0 3 0 0 3 3 3 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|312136832|ref|YP_004004169.1| - 0.0096 15.4 0.0 6.2 6.4 0.0 2.7 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.20 gi|312136832|ref|YP_004004169.1| - 0.013 15.8 0.2 2.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Transposase CENP-B_N PF04218.13 gi|312136832|ref|YP_004004169.1| - 0.036 13.7 1.9 1.5 8.5 0.1 2.7 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.12 gi|312136832|ref|YP_004004169.1| - 0.037 13.8 0.0 0.47 10.3 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_20 PF12840.7 gi|312136832|ref|YP_004004169.1| - 0.042 13.9 0.0 5.2 7.2 0.0 2.8 4 0 0 4 4 3 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|312136832|ref|YP_004004169.1| - 0.09 12.9 0.1 3.8 7.7 0.1 2.4 1 1 1 2 2 2 0 Trp repressor protein Terminase_5 PF06056.12 gi|312136832|ref|YP_004004169.1| - 0.12 12.2 0.3 23 5.0 0.0 2.8 2 1 1 3 3 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.7 gi|312136832|ref|YP_004004169.1| - 0.17 12.1 8.4 0.25 11.5 0.2 3.8 3 1 0 3 3 3 0 Helix-turn-helix domain Glycos_transf_4 PF00953.21 gi|312136833|ref|YP_004004170.1| - 2.1e-27 96.0 23.9 3.1e-27 95.5 19.1 2.9 2 1 0 2 2 2 1 Glycosyl transferase family 4 TPR_12 PF13424.6 gi|312136834|ref|YP_004004171.1| - 3.3e-08 33.7 1.5 1.6e-06 28.3 0.2 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|312136834|ref|YP_004004171.1| - 9.6e-08 31.6 6.1 0.086 13.0 0.1 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|312136834|ref|YP_004004171.1| - 0.00014 21.8 8.5 0.79 10.1 0.2 4.2 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|312136834|ref|YP_004004171.1| - 0.00089 18.9 0.6 0.48 10.1 0.1 2.7 2 0 0 2 2 2 2 TPR repeat TPR_1 PF00515.28 gi|312136834|ref|YP_004004171.1| - 0.0014 18.3 5.6 0.48 10.3 0.1 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|312136834|ref|YP_004004171.1| - 0.0026 17.7 0.2 0.34 11.0 0.1 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|312136834|ref|YP_004004171.1| - 0.0034 17.7 1.1 0.51 10.7 0.1 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|312136834|ref|YP_004004171.1| - 0.01 15.7 0.3 1 9.3 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat Leptin PF02024.15 gi|312136834|ref|YP_004004171.1| - 0.037 13.8 0.0 0.2 11.5 0.0 2.0 1 1 1 2 2 2 0 Leptin TPR_21 PF09976.9 gi|312136834|ref|YP_004004171.1| - 0.054 13.2 1.5 0.38 10.4 1.1 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat-like domain PriA_3primeBD PF17764.1 gi|312136834|ref|YP_004004171.1| - 0.06 13.3 0.2 7.9 6.4 0.1 2.5 2 0 0 2 2 2 0 3′ DNA-binding domain (3′BD) MtrB PF05440.12 gi|312136834|ref|YP_004004171.1| - 0.069 13.6 0.5 0.45 11.0 0.1 2.4 1 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B nsp9 PF08710.10 gi|312136834|ref|YP_004004171.1| - 0.07 13.5 0.2 0.32 11.4 0.1 2.1 1 1 1 2 2 2 0 nsp9 replicase TPR_16 PF13432.6 gi|312136834|ref|YP_004004171.1| - 0.084 13.5 0.0 0.51 11.0 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat HGD-D PF06050.13 gi|312136834|ref|YP_004004171.1| - 0.094 12.5 1.8 0.12 12.1 1.3 1.4 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component TPR_14 PF13428.6 gi|312136834|ref|YP_004004171.1| - 0.18 12.7 0.0 6.8 7.8 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Vps39_1 PF10366.9 gi|312136834|ref|YP_004004171.1| - 0.19 12.0 2.7 0.36 11.1 2.1 2.0 1 1 0 1 1 1 0 Vacuolar sorting protein 39 domain 1 DUF2373 PF10180.9 gi|312136834|ref|YP_004004171.1| - 0.31 10.9 3.2 1.6 8.6 0.2 3.0 2 1 0 3 3 3 0 Uncharacterised conserved protein (DUF2373) Tho2 PF11262.8 gi|312136834|ref|YP_004004171.1| - 0.63 9.2 7.9 0.099 11.8 3.6 1.8 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF4844 PF16133.5 gi|312136834|ref|YP_004004171.1| - 1 10.0 10.7 0.18 12.4 1.3 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4844) TFIIA_gamma_N PF02268.16 gi|312136834|ref|YP_004004171.1| - 1.5 8.9 4.8 43 4.2 0.1 3.9 3 1 1 4 4 4 0 Transcription initiation factor IIA, gamma subunit, helical domain Fib_alpha PF08702.10 gi|312136834|ref|YP_004004171.1| - 6.3 7.0 7.2 4.4 7.5 3.3 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ATPase PF06745.13 gi|312136835|ref|YP_004004172.1| - 1.4e-30 106.3 0.0 1.8e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|312136835|ref|YP_004004172.1| - 0.00014 21.5 0.0 0.00017 21.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.12 gi|312136835|ref|YP_004004172.1| - 0.0042 16.8 0.2 0.0062 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_24 PF13479.6 gi|312136835|ref|YP_004004172.1| - 0.013 15.2 0.1 0.029 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain RecA PF00154.21 gi|312136835|ref|YP_004004172.1| - 0.033 13.7 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein EKR PF10371.9 gi|312136835|ref|YP_004004172.1| - 0.19 11.5 0.0 0.72 9.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function HhH-GPD PF00730.25 gi|312136836|ref|YP_004004173.1| - 1.3e-30 106.0 0.4 2.2e-30 105.3 0.2 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|312136836|ref|YP_004004173.1| - 6.8e-11 41.5 0.1 1.3e-09 37.4 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|312136836|ref|YP_004004173.1| - 1e-05 26.0 3.3 0.077 13.6 0.6 2.7 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|312136836|ref|YP_004004173.1| - 0.00022 21.3 0.0 0.22 11.7 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|312136836|ref|YP_004004173.1| - 0.00033 20.7 0.5 0.0055 16.7 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2400) DUF3349 PF11829.8 gi|312136836|ref|YP_004004173.1| - 0.0006 20.5 0.5 0.0016 19.2 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) HRDC PF00570.23 gi|312136836|ref|YP_004004173.1| - 0.0015 18.5 0.1 0.92 9.5 0.0 2.5 2 0 0 2 2 2 2 HRDC domain AGOG PF09171.10 gi|312136836|ref|YP_004004173.1| - 0.0059 16.0 3.9 0.068 12.5 0.1 2.3 1 1 1 2 2 2 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|312136836|ref|YP_004004173.1| - 0.0079 16.5 3.3 0.013 15.8 3.3 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF763 PF05559.11 gi|312136836|ref|YP_004004173.1| - 0.034 13.3 0.1 0.052 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF763) DUF2887 PF11103.8 gi|312136836|ref|YP_004004173.1| - 0.2 11.6 2.6 0.28 11.1 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) tRNA_anti-codon PF01336.25 gi|312136837|ref|YP_004004174.1| - 3e-09 36.7 0.8 7.7e-09 35.4 0.2 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|312136837|ref|YP_004004174.1| - 4.6e-05 23.7 24.6 0.014 15.7 3.2 2.6 1 1 0 2 2 2 2 DnaJ central domain tRNA_anti_2 PF13742.6 gi|312136837|ref|YP_004004174.1| - 0.00054 20.1 0.2 0.0039 17.4 0.1 2.5 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|312136837|ref|YP_004004174.1| - 0.00064 19.9 0.1 0.0013 18.9 0.1 1.5 1 0 0 1 1 1 1 DHH family DZR PF12773.7 gi|312136837|ref|YP_004004174.1| - 0.0015 18.5 10.9 0.02 14.9 1.5 2.7 1 1 1 2 2 2 2 Double zinc ribbon S1 PF00575.23 gi|312136837|ref|YP_004004174.1| - 0.0057 17.0 1.9 0.0057 17.0 1.9 3.9 3 1 0 3 3 3 1 S1 RNA binding domain RMI2 PF16100.5 gi|312136837|ref|YP_004004174.1| - 0.011 15.5 0.1 0.023 14.5 0.1 1.5 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 Rep_fac-A_3 PF08661.11 gi|312136837|ref|YP_004004174.1| - 0.033 14.5 0.2 0.083 13.2 0.2 1.6 1 0 0 1 1 1 0 Replication factor A protein 3 TF_Zn_Ribbon PF08271.12 gi|312136837|ref|YP_004004174.1| - 5.5 6.6 19.1 0.05 13.1 1.9 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|312136837|ref|YP_004004174.1| - 9.1 6.3 23.7 2.5 8.1 0.4 4.0 2 2 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein MFS_1 PF07690.16 gi|312136838|ref|YP_004004175.1| - 8.4e-29 100.6 71.5 9.9e-22 77.3 36.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily BPL_N PF09825.9 gi|312136839|ref|YP_004004176.1| - 1.9e-13 50.3 0.0 5.1e-09 35.7 0.1 2.4 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal PMBR PF09373.10 gi|312136839|ref|YP_004004176.1| - 2.5e-10 40.0 10.5 5e-07 29.6 0.2 5.3 5 0 0 5 5 5 2 Pseudomurein-binding repeat LBP_M PF17385.2 gi|312136839|ref|YP_004004176.1| - 6e-06 25.9 0.2 1.4e-05 24.7 0.2 1.7 1 1 0 1 1 1 1 Lacto-N-biose phosphorylase central domain ThuA PF06283.11 gi|312136839|ref|YP_004004176.1| - 4.9e-05 23.6 0.0 0.0001 22.6 0.0 1.5 1 0 0 1 1 1 1 Trehalose utilisation DJ-1_PfpI PF01965.24 gi|312136839|ref|YP_004004176.1| - 0.00033 20.5 0.0 0.00061 19.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|312136839|ref|YP_004004176.1| - 0.073 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I fn3_5 PF06280.12 gi|312136839|ref|YP_004004176.1| - 0.31 11.8 4.4 3 8.6 0.6 2.6 2 1 0 2 2 2 0 Fn3-like domain NMT1_2 PF13379.6 gi|312136840|ref|YP_004004177.1| - 9.9e-48 163.0 0.3 1.3e-47 162.6 0.3 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|312136840|ref|YP_004004177.1| - 7.7e-41 140.4 0.4 1e-40 140.0 0.4 1.2 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.12 gi|312136840|ref|YP_004004177.1| - 2.7e-13 50.1 0.1 4.4e-13 49.4 0.1 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Lipoprotein_9 PF03180.14 gi|312136840|ref|YP_004004177.1| - 4e-11 42.5 0.0 1.1e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 NLPA lipoprotein NMT1_3 PF16868.5 gi|312136840|ref|YP_004004177.1| - 3.1e-10 40.0 0.1 8.4e-10 38.5 0.1 1.7 1 1 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|312136840|ref|YP_004004177.1| - 4.8e-10 39.4 0.0 1.5e-09 37.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|312136840|ref|YP_004004177.1| - 1.3e-09 37.8 0.0 6.4e-09 35.6 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 VitK2_biosynth PF02621.14 gi|312136840|ref|YP_004004177.1| - 6.5e-07 29.1 0.0 4.4e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 Menaquinone biosynthesis DUF3834 PF12916.7 gi|312136840|ref|YP_004004177.1| - 4.3e-06 26.1 1.1 8.6e-06 25.2 1.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3834) PBP_like PF12727.7 gi|312136840|ref|YP_004004177.1| - 0.0018 17.4 0.0 0.0049 16.0 0.0 1.6 1 1 1 2 2 2 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|312136840|ref|YP_004004177.1| - 0.021 14.6 0.0 0.053 13.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein DctP PF03480.13 gi|312136840|ref|YP_004004177.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 BPD_transp_1 PF00528.22 gi|312136841|ref|YP_004004178.1| - 8.4e-23 81.1 12.0 8.4e-23 81.1 12.0 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Adenosine_kin PF04008.14 gi|312136841|ref|YP_004004178.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Adenosine specific kinase ABC_tran PF00005.27 gi|312136842|ref|YP_004004179.1| - 2.9e-35 121.8 0.0 7.4e-35 120.5 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|312136842|ref|YP_004004179.1| - 2.6e-09 37.3 0.0 0.00057 19.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ATPase_2 PF01637.18 gi|312136842|ref|YP_004004179.1| - 1.4e-05 25.1 0.0 4.1e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|312136842|ref|YP_004004179.1| - 6.7e-05 23.2 0.2 0.0007 19.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|312136842|ref|YP_004004179.1| - 0.0002 21.3 0.0 0.00042 20.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|312136842|ref|YP_004004179.1| - 0.0003 20.8 0.1 0.0025 17.8 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|312136842|ref|YP_004004179.1| - 0.00032 21.2 0.5 0.00032 21.2 0.5 1.7 2 1 0 2 2 1 1 AAA domain AAA PF00004.29 gi|312136842|ref|YP_004004179.1| - 0.00083 19.8 0.2 0.0036 17.7 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|312136842|ref|YP_004004179.1| - 0.001 18.0 0.1 0.26 10.0 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|312136842|ref|YP_004004179.1| - 0.0024 18.3 0.0 0.0033 17.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|312136842|ref|YP_004004179.1| - 0.0025 17.8 0.1 0.028 14.4 0.0 2.2 2 0 0 2 2 2 1 NACHT domain SMC_N PF02463.19 gi|312136842|ref|YP_004004179.1| - 0.0039 16.6 0.1 0.28 10.6 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|312136842|ref|YP_004004179.1| - 0.0054 16.5 1.5 0.012 15.3 0.2 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|312136842|ref|YP_004004179.1| - 0.0055 16.7 0.1 0.039 14.0 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|312136842|ref|YP_004004179.1| - 0.0074 16.5 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|312136842|ref|YP_004004179.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|312136842|ref|YP_004004179.1| - 0.011 15.3 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|312136842|ref|YP_004004179.1| - 0.015 15.3 0.0 0.055 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|312136842|ref|YP_004004179.1| - 0.04 14.5 0.0 0.095 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|312136842|ref|YP_004004179.1| - 0.056 13.2 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|312136842|ref|YP_004004179.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|312136842|ref|YP_004004179.1| - 0.078 12.7 0.3 0.16 11.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|312136842|ref|YP_004004179.1| - 0.088 12.9 0.0 0.9 9.6 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase G-alpha PF00503.20 gi|312136842|ref|YP_004004179.1| - 0.094 11.9 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|312136842|ref|YP_004004179.1| - 0.11 11.7 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|312136842|ref|YP_004004179.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|312136842|ref|YP_004004179.1| - 0.15 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Phg_2220_C PF09524.10 gi|312136843|ref|YP_004004180.1| - 0.034 14.2 0.7 0.098 12.7 0.1 2.1 1 1 0 1 1 1 0 Conserved phage C-terminus (Phg_2220_C) AbiJ_NTD3 PF18860.1 gi|312136843|ref|YP_004004180.1| - 0.069 12.7 0.1 0.47 10.0 0.0 1.9 2 0 0 2 2 2 0 AbiJ N-terminal domain 3 DUF16 PF01519.16 gi|312136843|ref|YP_004004180.1| - 4.2 7.9 7.5 6.2 7.4 4.8 2.3 2 1 0 2 2 2 0 Protein of unknown function DUF16 Asn_synthase PF00733.21 gi|312136844|ref|YP_004004181.1| - 5.1e-52 177.7 0.9 8e-29 101.4 0.1 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|312136844|ref|YP_004004181.1| - 1.3e-19 70.3 0.0 3.2e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|312136844|ref|YP_004004181.1| - 4.7e-16 59.2 0.0 1.2e-15 57.9 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 gi|312136844|ref|YP_004004181.1| - 6.2e-05 22.2 0.2 0.00024 20.3 0.1 1.9 2 0 0 2 2 2 1 NAD synthase QueC PF06508.13 gi|312136844|ref|YP_004004181.1| - 0.0032 17.0 0.0 0.0064 16.0 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|312136844|ref|YP_004004181.1| - 0.085 12.1 0.2 0.14 11.4 0.2 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase DUF5518 PF17647.1 gi|312136845|ref|YP_004004182.1| - 9.8e-05 22.5 9.6 0.00013 22.1 9.6 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) MIP PF00230.20 gi|312136845|ref|YP_004004182.1| - 0.0042 16.8 1.4 0.0055 16.4 1.4 1.1 1 0 0 1 1 1 1 Major intrinsic protein DUF3169 PF11368.8 gi|312136845|ref|YP_004004182.1| - 0.057 12.9 0.8 0.057 12.9 0.8 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3169) DUF2370 PF10176.9 gi|312136845|ref|YP_004004182.1| - 0.15 11.7 0.8 0.22 11.1 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) Hum_adeno_E3A PF05393.11 gi|312136845|ref|YP_004004182.1| - 0.36 10.8 1.5 1.3 9.1 0.3 2.0 1 1 0 2 2 2 0 Human adenovirus early E3A glycoprotein TraL PF07178.11 gi|312136845|ref|YP_004004182.1| - 0.56 10.7 4.9 0.14 12.6 0.9 1.8 1 1 1 2 2 2 0 TraL protein PhoR PF11808.8 gi|312136845|ref|YP_004004182.1| - 0.56 10.6 2.9 35 4.9 0.0 2.8 3 0 0 3 3 3 0 Phosphate regulon sensor protein PhoR DUF2070 PF09843.9 gi|312136845|ref|YP_004004182.1| - 1.4 7.1 5.3 1.8 6.8 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1072 PF06380.11 gi|312136845|ref|YP_004004182.1| - 2.5 8.1 0.0 2.5 8.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) DUF3792 PF12670.7 gi|312136845|ref|YP_004004182.1| - 3.8 7.7 18.4 44 4.3 18.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) PDH PF02153.17 gi|312136846|ref|YP_004004183.1| - 1.6e-69 233.8 4.7 2.8e-69 233.0 4.7 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|312136846|ref|YP_004004183.1| - 4.4e-13 49.6 2.3 6.8e-13 49.0 0.2 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|312136846|ref|YP_004004183.1| - 6.8e-11 42.6 0.3 5e-10 39.8 0.0 2.5 3 1 1 4 4 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|312136846|ref|YP_004004183.1| - 5.3e-10 39.1 0.2 1.7e-09 37.5 0.2 1.8 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDX-ACB PF03147.14 gi|312136846|ref|YP_004004183.1| - 1.4e-06 28.6 0.1 1.2e-05 25.7 0.0 2.6 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain adh_short PF00106.25 gi|312136846|ref|YP_004004183.1| - 2.3e-06 27.2 1.1 7.2e-06 25.6 0.2 2.3 2 1 1 3 3 3 1 short chain dehydrogenase Shikimate_DH PF01488.20 gi|312136846|ref|YP_004004183.1| - 5.5e-05 23.3 4.3 0.00021 21.3 0.1 3.2 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|312136846|ref|YP_004004183.1| - 9.2e-05 21.9 0.3 0.0021 17.5 0.1 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_trans_4_2 PF13477.6 gi|312136846|ref|YP_004004183.1| - 0.00038 20.5 1.2 0.12 12.4 0.1 2.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like DpaA_N PF16924.5 gi|312136846|ref|YP_004004183.1| - 0.00067 19.7 0.2 0.0029 17.7 0.0 2.2 2 0 0 2 2 2 1 Dipicolinate synthase subunit A N-terminal domain ApbA PF02558.16 gi|312136846|ref|YP_004004183.1| - 0.00082 19.0 0.3 0.0032 17.1 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|312136846|ref|YP_004004183.1| - 0.00097 18.5 0.3 0.014 14.7 0.3 2.5 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2642 PF10842.8 gi|312136846|ref|YP_004004183.1| - 0.0024 17.7 0.1 0.0065 16.3 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2642) NAD_Gly3P_dh_N PF01210.23 gi|312136846|ref|YP_004004183.1| - 0.0057 16.6 5.7 0.18 11.8 1.6 3.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|312136846|ref|YP_004004183.1| - 0.0062 16.1 0.0 0.1 12.1 0.0 2.4 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase ADH_zinc_N PF00107.26 gi|312136846|ref|YP_004004183.1| - 0.011 15.8 0.3 0.14 12.1 0.0 2.8 2 1 1 3 3 3 0 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.22 gi|312136846|ref|YP_004004183.1| - 0.011 16.5 0.1 0.054 14.3 0.0 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Cnd1 PF12717.7 gi|312136846|ref|YP_004004183.1| - 0.013 15.5 1.0 0.037 14.1 1.0 1.8 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 Flavodoxin_5 PF12724.7 gi|312136846|ref|YP_004004183.1| - 0.017 15.3 0.0 0.78 10.0 0.0 3.2 3 1 1 4 4 4 0 Flavodoxin domain Rossmann-like PF10727.9 gi|312136846|ref|YP_004004183.1| - 0.033 14.0 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain DUF2431 PF10354.9 gi|312136846|ref|YP_004004183.1| - 0.037 14.3 1.4 0.17 12.1 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2431) DUF241 PF03087.14 gi|312136846|ref|YP_004004183.1| - 0.25 11.2 5.2 0.51 10.1 5.2 1.5 1 0 0 1 1 1 0 Arabidopsis protein of unknown function ZnuA PF01297.17 gi|312136846|ref|YP_004004183.1| - 1.8 7.9 5.6 4.7 6.5 0.0 3.1 2 1 1 3 3 3 0 Zinc-uptake complex component A periplasmic STT3 PF02516.14 gi|312136847|ref|YP_004004184.1| - 5.9e-64 216.8 41.5 4.2e-53 181.0 21.2 3.1 1 1 1 2 2 2 2 Oligosaccharyl transferase STT3 subunit TPP_enzyme_N PF02776.18 gi|312136848|ref|YP_004004185.1| - 4.5e-53 179.4 0.0 1e-50 171.7 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|312136848|ref|YP_004004185.1| - 1.5e-48 164.4 0.0 5.1e-48 162.7 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|312136848|ref|YP_004004185.1| - 1.4e-26 92.9 0.0 3.1e-26 91.7 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Ada3 PF10198.9 gi|312136848|ref|YP_004004185.1| - 0.0046 17.1 0.4 0.012 15.7 0.4 1.7 1 0 0 1 1 1 1 Histone acetyltransferases subunit 3 Oxidored_q6 PF01058.22 gi|312136850|ref|YP_004004187.1| - 8.1e-32 109.8 0.2 9.7e-32 109.6 0.2 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|312136851|ref|YP_004004188.1| - 1.6e-67 227.5 0.0 3.9e-46 157.3 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|312136851|ref|YP_004004188.1| - 3.1e-18 66.0 2.4 1.9e-14 53.5 0.1 3.5 4 0 0 4 4 4 3 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|312136851|ref|YP_004004188.1| - 5.6e-14 52.8 0.1 1.5e-13 51.5 0.0 1.7 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|312136852|ref|YP_004004189.1| - 2.6e-67 227.3 26.6 2.9e-67 227.1 26.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|312136853|ref|YP_004004190.1| - 1.7e-15 56.1 13.6 1.2e-08 34.4 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136853|ref|YP_004004190.1| - 2.5e-10 40.8 8.5 3.9e-10 40.1 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312136853|ref|YP_004004190.1| - 8.3e-10 38.7 7.5 1.8e-05 24.8 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136853|ref|YP_004004190.1| - 1.2e-08 34.6 12.6 3.4e-05 23.7 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312136853|ref|YP_004004190.1| - 5.3e-08 32.9 16.2 5.1e-07 29.8 6.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136853|ref|YP_004004190.1| - 1.9e-07 30.7 11.2 0.0011 18.9 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136853|ref|YP_004004190.1| - 1.1e-06 29.5 18.4 3.6e-05 24.6 10.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|312136853|ref|YP_004004190.1| - 4.4e-06 26.7 20.2 1.9e-05 24.7 10.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136853|ref|YP_004004190.1| - 0.00054 20.4 9.9 0.0027 18.2 10.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136853|ref|YP_004004190.1| - 0.0015 18.9 12.6 0.076 13.5 13.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136853|ref|YP_004004190.1| - 0.0046 17.8 16.1 0.047 14.6 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|312136853|ref|YP_004004190.1| - 0.23 12.2 0.2 0.23 12.2 0.2 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|312136853|ref|YP_004004190.1| - 0.5 11.0 15.2 0.41 11.3 1.9 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|312136853|ref|YP_004004190.1| - 0.56 11.1 11.5 0.83 10.5 1.1 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136853|ref|YP_004004190.1| - 0.73 10.4 11.2 2.3 8.8 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF4564 PF15169.6 gi|312136854|ref|YP_004004191.1| - 0.39 10.4 2.9 0.65 9.7 2.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4564) DUF423 PF04241.15 gi|312136854|ref|YP_004004191.1| - 5.8 7.2 9.5 1.9 8.8 2.3 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF423) Oxidored_q2 PF00420.24 gi|312136855|ref|YP_004004192.1| - 0.28 10.8 10.6 0.91 9.2 10.6 1.7 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|312136856|ref|YP_004004193.1| - 3.8e-60 203.6 28.7 3.8e-60 203.6 28.7 3.7 1 1 3 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|312136856|ref|YP_004004193.1| - 3.3e-11 43.1 2.5 3.3e-11 43.1 2.5 3.7 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|312136857|ref|YP_004004194.1| - 6e-33 114.3 29.5 6e-33 114.3 29.5 2.0 1 1 1 2 2 2 1 Proton-conducting membrane transporter SurE PF01975.17 gi|312136858|ref|YP_004004195.1| - 9.4e-55 185.4 0.1 1.1e-54 185.2 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Aminotran_4 PF01063.19 gi|312136859|ref|YP_004004196.1| - 2e-50 171.8 0.0 2.3e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DUF4041 PF13250.6 gi|312136859|ref|YP_004004196.1| - 0.13 12.1 0.4 0.5 10.3 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) CPCFC PF17223.3 gi|312136859|ref|YP_004004196.1| - 0.43 10.4 2.4 0.77 9.6 2.4 1.4 1 0 0 1 1 1 0 Cuticle protein CPCFC DUF429 PF04250.13 gi|312136860|ref|YP_004004197.1| - 0.00052 19.9 0.0 0.0081 16.0 0.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF429) DRTGG PF07085.12 gi|312136860|ref|YP_004004197.1| - 0.11 12.3 0.0 10 6.0 0.0 2.5 2 0 0 2 2 2 0 DRTGG domain Fer4_6 PF12837.7 gi|312136861|ref|YP_004004198.1| - 3.7e-10 39.4 17.1 7.6e-07 28.9 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|312136861|ref|YP_004004198.1| - 5.3e-10 38.7 20.0 5.9e-07 29.0 4.5 3.0 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312136861|ref|YP_004004198.1| - 5.8e-09 35.9 12.6 7.4e-09 35.6 12.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312136861|ref|YP_004004198.1| - 9.2e-09 35.8 36.1 9.4e-05 22.9 13.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136861|ref|YP_004004198.1| - 6.9e-08 32.1 14.2 0.00051 20.0 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312136861|ref|YP_004004198.1| - 1.8e-07 31.2 12.2 2.4e-07 30.8 12.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136861|ref|YP_004004198.1| - 2.1e-06 27.8 14.1 0.00036 20.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136861|ref|YP_004004198.1| - 2.1e-06 28.6 11.7 0.00064 20.6 2.7 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|312136861|ref|YP_004004198.1| - 1.2e-05 25.3 15.6 3.5e-05 23.9 15.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136861|ref|YP_004004198.1| - 0.00075 19.9 9.8 0.0041 17.5 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136861|ref|YP_004004198.1| - 0.0026 18.6 18.0 0.16 13.0 6.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312136861|ref|YP_004004198.1| - 0.0041 17.3 14.8 0.12 12.6 14.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136861|ref|YP_004004198.1| - 0.023 15.2 14.7 0.16 12.6 4.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136861|ref|YP_004004198.1| - 2.9 8.7 15.8 5e+02 1.5 15.8 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Inos-1-P_synth PF01658.17 gi|312136862|ref|YP_004004199.1| - 3.3e-34 117.4 0.0 5.8e-34 116.6 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|312136862|ref|YP_004004199.1| - 0.02 14.3 0.0 0.05 13.0 0.0 1.7 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Lactamase_B PF00753.27 gi|312136863|ref|YP_004004200.1| - 2.7e-10 40.6 0.0 3.7e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312136863|ref|YP_004004200.1| - 6.4e-06 25.8 0.0 9.4e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain UbiA PF01040.18 gi|312136864|ref|YP_004004201.1| - 1.1e-41 142.9 19.5 1.3e-41 142.6 19.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PmbA_TldD PF01523.16 gi|312136865|ref|YP_004004202.1| - 4.7e-58 197.2 0.4 6.5e-58 196.8 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SepSecS PF05889.13 gi|312136866|ref|YP_004004203.1| - 2.6e-38 131.8 0.2 3.8e-38 131.2 0.2 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|312136866|ref|YP_004004203.1| - 2.7e-19 69.4 0.0 6.6e-19 68.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|312136866|ref|YP_004004203.1| - 4.1e-10 39.4 0.0 4.8e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|312136866|ref|YP_004004203.1| - 0.00036 19.9 0.0 0.0005 19.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|312136866|ref|YP_004004203.1| - 0.00041 19.2 0.0 0.00081 18.2 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|312136866|ref|YP_004004203.1| - 0.0008 18.8 0.0 0.0021 17.4 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|312136866|ref|YP_004004203.1| - 0.0081 14.7 0.0 0.01 14.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Ribosomal_S10 PF00338.22 gi|312136867|ref|YP_004004204.1| - 7.1e-29 99.9 0.0 7.9e-29 99.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|312136867|ref|YP_004004204.1| - 0.0095 16.7 0.1 0.023 15.5 0.0 1.6 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|312136868|ref|YP_004004205.1| - 2.2e-61 206.8 0.0 2.9e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|312136868|ref|YP_004004205.1| - 9.1e-39 132.2 0.7 1.8e-38 131.3 0.2 1.8 2 0 0 2 2 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|312136868|ref|YP_004004205.1| - 7e-17 61.6 1.8 7e-17 61.6 1.8 1.8 2 0 0 2 2 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|312136868|ref|YP_004004205.1| - 1e-07 32.0 0.0 3.5e-07 30.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|312136868|ref|YP_004004205.1| - 0.00046 20.1 0.8 0.1 12.5 0.1 2.4 1 1 1 2 2 2 2 RsgA GTPase Septin PF00735.18 gi|312136868|ref|YP_004004205.1| - 0.0025 17.1 0.0 0.0042 16.4 0.0 1.3 1 0 0 1 1 1 1 Septin GTP_EFTU_D4 PF14578.6 gi|312136868|ref|YP_004004205.1| - 0.0025 17.7 1.1 0.0063 16.4 1.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|312136868|ref|YP_004004205.1| - 0.0035 16.9 0.6 0.057 12.9 0.1 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Gtr1_RagA PF04670.12 gi|312136868|ref|YP_004004205.1| - 0.0076 15.6 0.1 0.059 12.7 0.1 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region G-alpha PF00503.20 gi|312136868|ref|YP_004004205.1| - 0.017 14.3 0.1 2.7 7.1 0.0 2.2 1 1 1 2 2 2 0 G-protein alpha subunit Dynamin_N PF00350.23 gi|312136868|ref|YP_004004205.1| - 0.024 14.7 0.1 11 6.0 0.0 2.7 2 1 1 3 3 3 0 Dynamin family SRPRB PF09439.10 gi|312136868|ref|YP_004004205.1| - 0.029 13.8 0.1 0.12 11.8 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF977 PF06163.11 gi|312136868|ref|YP_004004205.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) cobW PF02492.19 gi|312136868|ref|YP_004004205.1| - 0.25 10.9 0.9 0.79 9.3 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|312136869|ref|YP_004004206.1| - 4.2e-61 205.9 0.9 5.7e-55 185.9 0.1 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Intein_splicing PF14890.6 gi|312136869|ref|YP_004004206.1| - 1.1e-37 129.0 7.0 4.5e-37 127.0 7.0 2.1 1 0 0 1 1 1 1 Intein splicing domain EFG_IV PF03764.18 gi|312136869|ref|YP_004004206.1| - 1e-29 102.8 0.2 5.6e-29 100.4 0.1 2.4 2 1 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|312136869|ref|YP_004004206.1| - 1.7e-24 85.7 1.2 4.9e-24 84.2 1.2 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|312136869|ref|YP_004004206.1| - 5.2e-24 84.1 0.0 1.9e-23 82.3 0.0 2.1 2 0 0 2 2 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|312136869|ref|YP_004004206.1| - 3.7e-17 62.5 2.0 4.4e-16 59.0 0.6 3.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 LAGLIDADG_3 PF14528.6 gi|312136869|ref|YP_004004206.1| - 0.0002 21.6 0.4 0.0011 19.3 0.4 2.4 1 0 0 1 1 1 1 LAGLIDADG-like domain Hint PF01079.20 gi|312136869|ref|YP_004004206.1| - 0.0004 19.9 0.1 0.0014 18.2 0.1 1.9 1 1 1 2 2 2 1 Hint module CMV_1a_C PF12503.8 gi|312136869|ref|YP_004004206.1| - 0.0048 16.9 0.1 0.026 14.5 0.1 2.3 1 0 0 1 1 1 1 Cucumber mosaic virus 1a protein C terminal MMR_HSR1 PF01926.23 gi|312136869|ref|YP_004004206.1| - 0.0069 16.4 0.8 0.072 13.2 0.0 3.0 3 0 0 3 3 3 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|312136869|ref|YP_004004206.1| - 0.0088 15.9 1.2 0.016 15.0 0.0 2.0 2 0 0 2 2 2 1 Class II release factor RF3, C-terminal domain CTI PF06934.11 gi|312136869|ref|YP_004004206.1| - 0.082 11.4 1.1 0.17 10.4 1.1 1.4 1 0 0 1 1 1 0 Fatty acid cis/trans isomerase (CTI) Ribosomal_S7 PF00177.21 gi|312136870|ref|YP_004004207.1| - 1.1e-45 154.9 6.9 1.4e-45 154.6 6.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Bestrophin PF01062.21 gi|312136870|ref|YP_004004207.1| - 0.12 11.8 0.1 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel Ribosom_S12_S23 PF00164.25 gi|312136871|ref|YP_004004208.1| - 3.1e-52 175.0 0.4 4.1e-52 174.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|312136872|ref|YP_004004209.1| - 6.7e-20 70.7 8.1 2.8e-15 55.9 0.2 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|312136872|ref|YP_004004209.1| - 8.3e-13 48.2 4.3 2.6e-12 46.6 0.1 2.7 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|312136872|ref|YP_004004209.1| - 9.7e-08 31.8 2.7 0.0012 18.7 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|312136872|ref|YP_004004209.1| - 1.9e-05 24.4 6.2 0.016 15.0 0.1 2.6 1 1 0 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|312136873|ref|YP_004004210.1| - 6.7e-23 80.2 0.1 7.4e-23 80.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|312136874|ref|YP_004004211.1| - 1e-57 195.6 4.3 1.4e-57 195.2 4.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Endotoxin_N PF03945.14 gi|312136874|ref|YP_004004211.1| - 0.16 11.6 2.8 0.22 11.2 1.2 1.9 2 0 0 2 2 2 0 delta endotoxin, N-terminal domain TraC PF07820.12 gi|312136874|ref|YP_004004211.1| - 0.42 11.0 0.1 0.42 11.0 0.1 2.5 3 0 0 3 3 3 0 TraC-like protein RNA_pol_Rpb1_7 PF04990.12 gi|312136874|ref|YP_004004211.1| - 0.71 9.9 6.2 2.8 7.9 6.1 2.2 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 7 DUF2683 PF10884.8 gi|312136874|ref|YP_004004211.1| - 7.7 6.9 12.4 0.6 10.4 3.9 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2683) RNA_pol_Rpb1_1 PF04997.12 gi|312136875|ref|YP_004004212.1| - 1.1e-101 340.3 0.3 3.3e-101 338.7 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|312136875|ref|YP_004004212.1| - 3.1e-75 252.0 0.2 7.7e-75 250.7 0.1 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|312136875|ref|YP_004004212.1| - 3.9e-34 117.8 0.0 8.4e-34 116.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|312136875|ref|YP_004004212.1| - 9e-34 115.7 0.1 4.6e-33 113.4 0.0 2.3 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|312136875|ref|YP_004004212.1| - 1.7e-25 90.0 0.0 3.9e-25 88.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 USP7_ICP0_bdg PF12436.8 gi|312136875|ref|YP_004004212.1| - 0.0046 16.3 0.0 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 ICP0-binding domain of Ubiquitin-specific protease 7 Lactamase_B_2 PF12706.7 gi|312136875|ref|YP_004004212.1| - 0.034 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TraB PF01963.17 gi|312136875|ref|YP_004004212.1| - 0.043 13.7 0.3 0.085 12.7 0.3 1.4 1 0 0 1 1 1 0 TraB family DUF1569 PF07606.11 gi|312136875|ref|YP_004004212.1| - 0.15 12.1 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1569) LMSTEN PF07988.12 gi|312136875|ref|YP_004004212.1| - 1.9 8.0 11.1 0.14 11.7 0.4 3.1 3 0 0 3 3 3 0 LMSTEN motif RNA_pol_Rpb2_6 PF00562.28 gi|312136876|ref|YP_004004213.1| - 1.4e-138 462.2 0.0 1.8e-138 461.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|312136876|ref|YP_004004213.1| - 1.9e-32 111.5 0.0 3.4e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|312136876|ref|YP_004004213.1| - 1e-23 83.4 0.2 2.3e-23 82.3 0.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|312136876|ref|YP_004004213.1| - 4.1e-12 46.5 5.2 1.6e-11 44.6 5.2 2.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|312136876|ref|YP_004004213.1| - 0.0017 18.6 0.6 0.017 15.4 0.4 2.4 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain Auto_anti-p27 PF06677.12 gi|312136876|ref|YP_004004213.1| - 0.11 12.7 1.6 0.29 11.3 1.6 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb2_1 PF04563.15 gi|312136877|ref|YP_004004214.1| - 2.1e-52 177.6 0.1 2.8e-52 177.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|312136877|ref|YP_004004214.1| - 2.3e-28 98.2 0.1 4.3e-28 97.3 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|312136877|ref|YP_004004214.1| - 9.9e-28 97.1 0.5 1.6e-27 96.4 0.5 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb5_C PF01191.19 gi|312136878|ref|YP_004004215.1| - 1.9e-33 114.2 0.7 2.1e-33 114.0 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain PASTA PF03793.19 gi|312136878|ref|YP_004004215.1| - 0.039 13.8 0.1 0.057 13.3 0.1 1.3 1 0 0 1 1 1 0 PASTA domain UPF0020 PF01170.18 gi|312136879|ref|YP_004004216.1| - 8.2e-49 166.0 0.0 1.2e-48 165.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|312136879|ref|YP_004004216.1| - 8.5e-26 90.8 0.4 1.9e-25 89.7 0.4 1.6 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.18 gi|312136879|ref|YP_004004216.1| - 3.9e-07 30.0 0.3 0.00019 21.2 0.0 2.6 2 1 0 2 2 2 2 DNA methylase Eco57I PF07669.11 gi|312136879|ref|YP_004004216.1| - 8.3e-07 29.5 0.4 2.1e-06 28.2 0.4 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.14 gi|312136879|ref|YP_004004216.1| - 1.5e-05 24.6 0.0 5.4e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain N6_Mtase PF02384.16 gi|312136879|ref|YP_004004216.1| - 2.6e-05 23.6 0.0 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|312136879|ref|YP_004004216.1| - 3.7e-05 23.6 0.0 0.00034 20.4 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|312136879|ref|YP_004004216.1| - 0.00063 19.3 0.6 0.0013 18.2 0.2 1.7 2 0 0 2 2 2 1 Putative methyltransferase AviRa PF11599.8 gi|312136879|ref|YP_004004216.1| - 0.001 18.6 0.0 0.078 12.4 0.0 2.2 2 0 0 2 2 2 1 RRNA methyltransferase AviRa DUF2325 PF10087.9 gi|312136879|ref|YP_004004216.1| - 0.017 15.2 0.5 0.22 11.7 0.2 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) Methyltransf_25 PF13649.6 gi|312136879|ref|YP_004004216.1| - 0.026 15.2 0.0 0.15 12.8 0.0 2.3 3 0 0 3 3 3 0 Methyltransferase domain N6-adenineMlase PF10237.9 gi|312136879|ref|YP_004004216.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase PPS_PS PF02006.16 gi|312136880|ref|YP_004004217.1| - 5.2e-75 250.8 5.4 6.4e-75 250.6 5.4 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DarA_N PF18788.1 gi|312136880|ref|YP_004004217.1| - 0.058 13.5 0.2 0.14 12.3 0.2 1.7 1 1 0 1 1 1 0 Defence against restriction A N-terminal NOP5NT PF08156.13 gi|312136880|ref|YP_004004217.1| - 0.13 12.7 0.9 0.36 11.2 0.9 1.7 1 0 0 1 1 1 0 NOP5NT (NUC127) domain Arabinose_Isome PF02610.15 gi|312136880|ref|YP_004004217.1| - 0.16 11.2 1.4 0.2 10.9 0.2 1.6 2 0 0 2 2 2 0 L-arabinose isomerase D5_N PF08706.11 gi|312136880|ref|YP_004004217.1| - 0.2 11.9 2.7 5.9 7.2 0.9 2.2 1 1 0 2 2 2 0 D5 N terminal like AAA_17 PF13207.6 gi|312136881|ref|YP_004004218.1| - 3.9e-17 62.9 0.1 6e-17 62.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|312136881|ref|YP_004004218.1| - 1.4e-08 35.3 0.1 2.2e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|312136881|ref|YP_004004218.1| - 2e-07 31.3 0.0 2.5e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|312136881|ref|YP_004004218.1| - 7.8e-06 26.1 0.0 1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|312136881|ref|YP_004004218.1| - 0.0079 15.9 0.0 0.059 13.0 0.1 2.0 2 0 0 2 2 2 1 Dephospho-CoA kinase P-mevalo_kinase PF04275.14 gi|312136881|ref|YP_004004218.1| - 0.013 15.4 0.0 0.044 13.7 0.0 1.9 1 1 0 1 1 1 0 Phosphomevalonate kinase RNA_binding PF01877.17 gi|312136882|ref|YP_004004219.1| - 8.9e-14 51.8 1.9 8.7e-13 48.6 1.9 2.0 1 1 0 1 1 1 1 RNA binding Diphthami_syn_2 PF01902.17 gi|312136883|ref|YP_004004220.1| - 3.1e-88 294.9 1.8 3.5e-88 294.8 1.8 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|312136883|ref|YP_004004220.1| - 0.12 11.8 0.0 0.31 10.5 0.0 1.7 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC LLGL PF08366.13 gi|312136884|ref|YP_004004221.1| - 0.037 14.4 0.0 0.073 13.4 0.0 1.5 1 0 0 1 1 1 0 LLGL2 YfhO PF09586.10 gi|312136884|ref|YP_004004221.1| - 1.1 7.4 6.8 0.31 9.2 4.1 1.4 2 0 0 2 2 2 0 Bacterial membrane protein YfhO Mub_B2 PF17966.1 gi|312136885|ref|YP_004004222.1| - 0.058 14.1 0.2 0.079 13.7 0.2 1.2 1 0 0 1 1 1 0 Mub B2-like domain SseC PF04888.12 gi|312136886|ref|YP_004004223.1| - 0.024 14.2 0.0 0.032 13.8 0.0 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DUF1533 PF07550.11 gi|312136888|ref|YP_004004225.1| - 0.64 9.9 5.4 4.2 7.3 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1533) DUF2101 PF09874.9 gi|312136889|ref|YP_004004226.1| - 2.5e-41 141.7 17.1 3.1e-41 141.4 17.1 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2244 PF10003.9 gi|312136889|ref|YP_004004226.1| - 0.046 13.4 3.3 0.13 11.9 0.2 2.2 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF2207 PF09972.9 gi|312136889|ref|YP_004004226.1| - 1.5 7.5 18.3 0.013 14.3 3.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2070 PF09843.9 gi|312136889|ref|YP_004004226.1| - 2.2 6.5 14.4 3 6.0 14.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4293 PF14126.6 gi|312136889|ref|YP_004004226.1| - 4.6 7.5 11.5 26 5.0 10.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) Sigma_reg_N PF13800.6 gi|312136889|ref|YP_004004226.1| - 6.6 7.1 13.2 0.9 9.9 0.6 2.9 2 1 0 2 2 2 0 Sigma factor regulator N-terminal DUF4097 PF13349.6 gi|312136890|ref|YP_004004227.1| - 0.011 15.1 0.1 0.013 14.8 0.1 1.2 1 0 0 1 1 1 0 Putative adhesin M60-like_N PF17291.2 gi|312136890|ref|YP_004004227.1| - 0.033 14.1 0.2 0.04 13.8 0.2 1.2 1 0 0 1 1 1 0 N-terminal domain of M60-like peptidases Class_IIIsignal PF04021.12 gi|312136890|ref|YP_004004227.1| - 0.18 11.8 3.5 0.4 10.7 3.5 1.6 1 0 0 1 1 1 0 Class III signal peptide HTH_3 PF01381.22 gi|312136891|ref|YP_004004228.1| - 3.8e-14 52.5 0.4 1.4e-13 50.6 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|312136891|ref|YP_004004228.1| - 8.4e-10 38.9 0.3 2.2e-09 37.5 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|312136891|ref|YP_004004228.1| - 1e-07 31.9 3.0 1.4e-07 31.4 0.2 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|312136891|ref|YP_004004228.1| - 2.4e-05 24.7 0.1 8.5e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|312136891|ref|YP_004004228.1| - 0.0024 17.8 0.4 0.0078 16.1 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.6 gi|312136891|ref|YP_004004228.1| - 0.003 17.4 0.1 0.0068 16.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|312136891|ref|YP_004004228.1| - 0.021 14.6 0.2 0.091 12.6 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|312136891|ref|YP_004004228.1| - 0.024 14.7 0.0 0.096 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase TPR_5 PF12688.7 gi|312136891|ref|YP_004004228.1| - 0.032 14.5 0.1 4.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Tetratrico peptide repeat HTH_37 PF13744.6 gi|312136891|ref|YP_004004228.1| - 0.067 13.2 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|312136891|ref|YP_004004228.1| - 0.085 12.7 0.0 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Phage_CI_repr PF07022.13 gi|312136891|ref|YP_004004228.1| - 0.093 12.8 0.0 0.21 11.7 0.0 1.6 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|312136891|ref|YP_004004228.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NUMOD1 PF07453.13 gi|312136891|ref|YP_004004228.1| - 0.11 12.8 0.6 0.45 10.8 0.2 2.2 2 0 0 2 2 2 0 NUMOD1 domain DUF1743 PF08489.11 gi|312136892|ref|YP_004004229.1| - 3.7e-41 139.8 0.0 7.5e-41 138.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti_2 PF13742.6 gi|312136892|ref|YP_004004229.1| - 1.7e-07 31.3 0.0 5e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|312136892|ref|YP_004004229.1| - 1.1e-06 28.5 0.0 2.2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DZR PF12773.7 gi|312136892|ref|YP_004004229.1| - 0.023 14.7 0.5 0.055 13.5 0.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|312136892|ref|YP_004004229.1| - 0.027 14.4 1.5 0.061 13.3 1.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_Rg PF17915.1 gi|312136892|ref|YP_004004229.1| - 0.075 12.4 2.4 0.15 11.5 2.4 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger C1_1 PF00130.22 gi|312136892|ref|YP_004004229.1| - 0.14 12.1 1.0 0.3 11.0 1.0 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-NADH-PPase PF09297.11 gi|312136892|ref|YP_004004229.1| - 0.15 11.7 0.5 0.28 10.9 0.5 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|312136892|ref|YP_004004229.1| - 0.32 10.6 2.3 4.9 6.8 0.1 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|312136892|ref|YP_004004229.1| - 0.45 10.3 8.0 5.7 6.8 1.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|312136892|ref|YP_004004229.1| - 1 9.1 6.5 0.6 9.8 1.9 2.9 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|312136892|ref|YP_004004229.1| - 1.1 8.8 4.2 3 7.4 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain MmgE_PrpD PF03972.14 gi|312136893|ref|YP_004004230.1| - 3.1e-107 358.8 0.0 3.8e-107 358.6 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Peptidase_U32 PF01136.19 gi|312136894|ref|YP_004004231.1| - 0.018 14.2 0.0 0.062 12.5 0.0 1.9 1 1 1 2 2 2 0 Peptidase family U32 Fumerase PF05681.14 gi|312136895|ref|YP_004004232.1| - 3.3e-64 216.9 0.1 3.7e-64 216.8 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Citrate_synt PF00285.21 gi|312136896|ref|YP_004004233.1| - 2.7e-46 158.3 0.0 6.6e-37 127.4 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase, C-terminal domain Spc7 PF08317.11 gi|312136897|ref|YP_004004234.1| - 0.0011 17.9 11.5 0.0014 17.6 11.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|312136897|ref|YP_004004234.1| - 0.0046 17.2 13.6 0.01 16.0 5.7 2.3 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|312136897|ref|YP_004004234.1| - 0.0065 17.0 7.3 0.0082 16.6 7.3 1.2 1 0 0 1 1 1 1 Fez1 SlyX PF04102.12 gi|312136897|ref|YP_004004234.1| - 0.016 15.8 2.3 4.7 7.9 0.1 2.4 1 1 1 2 2 2 0 SlyX Lebercilin PF15619.6 gi|312136897|ref|YP_004004234.1| - 0.023 14.4 16.0 0.47 10.1 16.0 2.2 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Atg14 PF10186.9 gi|312136897|ref|YP_004004234.1| - 0.032 13.3 12.7 0.038 13.1 12.7 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3552 PF12072.8 gi|312136897|ref|YP_004004234.1| - 0.046 13.1 10.3 0.061 12.7 10.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Med9 PF07544.13 gi|312136897|ref|YP_004004234.1| - 0.18 11.9 15.5 2.5 8.2 12.5 2.7 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TMPIT PF07851.13 gi|312136897|ref|YP_004004234.1| - 0.26 10.5 11.3 0.33 10.1 10.2 1.6 1 1 1 2 2 2 0 TMPIT-like protein UvrA_inter PF17760.1 gi|312136897|ref|YP_004004234.1| - 0.42 10.7 5.6 0.62 10.2 2.2 2.4 2 1 1 3 3 3 0 UvrA interaction domain ATG16 PF08614.11 gi|312136897|ref|YP_004004234.1| - 0.46 10.7 14.8 1 9.5 2.0 2.7 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Exonuc_VII_L PF02601.15 gi|312136897|ref|YP_004004234.1| - 0.49 9.9 5.1 0.57 9.7 5.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit USP8_interact PF08941.10 gi|312136897|ref|YP_004004234.1| - 0.6 9.9 4.9 1.2 9.0 1.0 2.2 1 1 1 2 2 2 0 USP8 interacting DUF2203 PF09969.9 gi|312136897|ref|YP_004004234.1| - 0.71 10.6 6.1 0.83 10.4 5.0 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF722 PF05263.11 gi|312136897|ref|YP_004004234.1| - 0.81 9.9 10.0 4.7 7.4 6.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF722) OmpH PF03938.14 gi|312136897|ref|YP_004004234.1| - 1.1 9.5 10.9 2.1 8.7 10.7 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF724 PF05266.14 gi|312136897|ref|YP_004004234.1| - 1.8 8.3 14.9 1.4 8.7 11.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF724) DUF16 PF01519.16 gi|312136897|ref|YP_004004234.1| - 1.9 9.0 14.8 79 3.8 14.7 2.7 1 1 0 1 1 1 0 Protein of unknown function DUF16 Prefoldin_2 PF01920.20 gi|312136897|ref|YP_004004234.1| - 3.2 7.7 20.5 4.8 7.2 4.4 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.12 gi|312136897|ref|YP_004004234.1| - 3.7 7.6 6.6 3.7 7.6 5.2 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|312136897|ref|YP_004004234.1| - 4 7.7 17.5 5.1 7.4 15.3 2.2 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Bcr-Abl_Oligo PF09036.10 gi|312136897|ref|YP_004004234.1| - 5.6 7.0 10.9 1.8 8.6 2.3 3.0 1 1 2 3 3 3 0 Bcr-Abl oncoprotein oligomerisation domain DivIC PF04977.15 gi|312136897|ref|YP_004004234.1| - 6 6.7 13.8 7 6.5 5.6 2.6 1 1 1 2 2 2 0 Septum formation initiator YabA PF06156.13 gi|312136897|ref|YP_004004234.1| - 6.1 7.5 12.2 7.2 7.3 10.3 2.1 1 1 1 2 2 2 0 Initiation control protein YabA BRE1 PF08647.11 gi|312136897|ref|YP_004004234.1| - 6.5 6.9 21.9 2.5 8.2 8.8 2.5 2 1 1 3 3 3 0 BRE1 E3 ubiquitin ligase CCDC-167 PF15188.6 gi|312136897|ref|YP_004004234.1| - 8.5 6.8 14.9 1.1 9.7 10.5 1.8 2 0 0 2 2 1 0 Coiled-coil domain-containing protein 167 PCRF PF03462.18 gi|312136897|ref|YP_004004234.1| - 8.6 6.2 8.3 11 5.8 7.7 1.5 1 1 0 1 1 1 0 PCRF domain Semialdhyde_dhC PF02774.18 gi|312136898|ref|YP_004004235.1| - 2.7e-46 158.0 0.0 8.8e-46 156.3 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|312136898|ref|YP_004004235.1| - 3.9e-37 127.4 0.0 9e-37 126.2 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|312136898|ref|YP_004004235.1| - 4.5e-05 23.1 0.5 0.0021 17.6 0.0 3.0 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|312136898|ref|YP_004004235.1| - 0.00057 20.2 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|312136898|ref|YP_004004235.1| - 0.012 15.7 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|312136898|ref|YP_004004235.1| - 0.014 16.2 0.0 0.033 14.9 0.0 1.8 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|312136898|ref|YP_004004235.1| - 0.032 14.1 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|312136898|ref|YP_004004235.1| - 0.037 13.9 0.0 0.083 12.8 0.0 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|312136898|ref|YP_004004235.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_C PF05173.14 gi|312136899|ref|YP_004004236.1| - 1.3e-41 141.4 0.2 2e-41 140.8 0.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|312136899|ref|YP_004004236.1| - 8.5e-38 129.3 2.7 8.5e-38 129.3 2.7 1.9 3 0 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|312136899|ref|YP_004004236.1| - 0.0047 17.2 0.4 0.011 16.0 0.4 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DHDPS PF00701.22 gi|312136900|ref|YP_004004237.1| - 7.9e-95 316.9 0.6 8.8e-95 316.7 0.6 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CoA_binding_2 PF13380.6 gi|312136900|ref|YP_004004237.1| - 0.051 14.1 0.1 0.088 13.3 0.1 1.6 1 1 0 1 1 1 0 CoA binding domain AA_kinase PF00696.28 gi|312136901|ref|YP_004004238.1| - 9e-55 185.9 2.4 1.4e-54 185.2 2.4 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|312136901|ref|YP_004004238.1| - 2e-24 85.2 0.3 1.4e-11 44.0 0.1 2.8 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|312136901|ref|YP_004004238.1| - 1.4e-12 47.2 0.1 1.6e-05 24.5 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|312136901|ref|YP_004004238.1| - 4.4e-05 24.0 0.4 0.13 12.9 0.1 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|312136901|ref|YP_004004238.1| - 0.00033 20.6 0.5 1.6 8.8 0.0 3.1 3 0 0 3 3 3 2 ACT domain SecD-TM1 PF13721.6 gi|312136901|ref|YP_004004238.1| - 0.0013 19.2 0.0 1.9 9.0 0.0 3.1 3 0 0 3 3 3 2 SecD export protein N-terminal TM region DUF2007 PF09413.10 gi|312136901|ref|YP_004004238.1| - 0.0071 16.5 0.0 0.049 13.8 0.0 2.4 3 0 0 3 3 3 1 Putative prokaryotic signal transducing protein CMD PF02627.20 gi|312136901|ref|YP_004004238.1| - 0.017 15.2 0.1 0.037 14.1 0.1 1.5 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family EIIA-man PF03610.16 gi|312136901|ref|YP_004004238.1| - 0.11 12.8 3.0 1.2 9.4 0.3 2.9 3 0 0 3 3 3 0 PTS system fructose IIA component TRIC PF05197.13 gi|312136901|ref|YP_004004238.1| - 0.11 12.1 0.3 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 TRIC channel Alba PF01918.21 gi|312136901|ref|YP_004004238.1| - 0.3 10.9 3.8 1 9.3 3.8 1.9 1 0 0 1 1 1 0 Alba KH_5 PF13184.6 gi|312136901|ref|YP_004004238.1| - 6.1 7.0 7.9 35 4.6 0.4 3.6 3 0 0 3 3 3 0 NusA-like KH domain Ribosomal_S17e PF00833.18 gi|312136902|ref|YP_004004239.1| - 6.4e-21 74.5 0.3 6.7e-21 74.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 CM_2 PF01817.21 gi|312136903|ref|YP_004004240.1| - 4.9e-12 46.0 9.7 6.1e-12 45.7 9.7 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Cytidylate_kin PF02224.18 gi|312136903|ref|YP_004004240.1| - 0.011 15.5 0.7 0.013 15.3 0.7 1.1 1 0 0 1 1 1 0 Cytidylate kinase KIP1 PF07765.12 gi|312136903|ref|YP_004004240.1| - 4 7.6 9.0 8.3 6.6 0.7 2.2 2 0 0 2 2 2 0 KIP1-like protein GHMP_kinases_N PF00288.26 gi|312136904|ref|YP_004004241.1| - 2.3e-13 50.1 2.2 8.8e-13 48.3 0.3 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|312136904|ref|YP_004004241.1| - 2e-07 31.3 0.0 1.8e-06 28.2 0.0 2.5 2 1 0 2 2 2 1 GHMP kinases C terminal Thioredoxin_3 PF13192.6 gi|312136905|ref|YP_004004242.1| - 7e-17 61.2 0.5 8.6e-17 61.0 0.5 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|312136905|ref|YP_004004242.1| - 2.9e-12 46.6 0.0 4.6e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|312136905|ref|YP_004004242.1| - 3.7e-10 40.2 0.3 5.9e-05 23.3 0.1 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.20 gi|312136905|ref|YP_004004242.1| - 4.3e-09 36.3 0.0 5.6e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|312136905|ref|YP_004004242.1| - 3.7e-06 26.9 0.0 0.0015 18.4 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain DUF836 PF05768.14 gi|312136905|ref|YP_004004242.1| - 4.2e-06 27.1 0.0 4.6e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF1223 PF06764.11 gi|312136905|ref|YP_004004242.1| - 0.00013 22.1 0.1 0.0094 16.0 0.1 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF1223) KaiB PF07689.12 gi|312136905|ref|YP_004004242.1| - 0.0028 17.3 0.0 0.0035 17.1 0.0 1.3 1 1 0 1 1 1 1 KaiB domain Thioredoxin_2 PF13098.6 gi|312136905|ref|YP_004004242.1| - 0.038 14.4 0.5 0.15 12.5 0.5 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain CbiD PF01888.17 gi|312136906|ref|YP_004004243.1| - 6.8e-91 304.0 8.1 6.8e-91 304.0 8.1 1.5 2 0 0 2 2 2 1 CbiD DNA_pol_phi PF04931.13 gi|312136906|ref|YP_004004243.1| - 0.1 10.7 0.0 0.14 10.2 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase phi Ketoacyl-synt_C PF02801.22 gi|312136906|ref|YP_004004243.1| - 0.13 12.3 2.9 0.38 10.8 0.2 2.5 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain Glycos_transf_1 PF00534.20 gi|312136907|ref|YP_004004244.1| - 1.5e-44 151.5 1.3 1.5e-44 151.5 1.3 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312136907|ref|YP_004004244.1| - 2.9e-39 134.6 0.7 3.5e-38 131.1 0.2 2.4 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312136907|ref|YP_004004244.1| - 2.1e-22 79.9 0.1 7.2e-22 78.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|312136907|ref|YP_004004244.1| - 6e-14 52.3 0.7 1.7e-13 50.8 0.7 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|312136907|ref|YP_004004244.1| - 2.3e-10 40.7 0.0 7.9e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|312136907|ref|YP_004004244.1| - 4.2e-10 40.3 0.0 1.1e-09 38.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain DUF2325 PF10087.9 gi|312136907|ref|YP_004004244.1| - 0.00027 21.0 0.5 0.0036 17.4 0.1 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2325) Glyco_transf_5 PF08323.11 gi|312136907|ref|YP_004004244.1| - 0.00042 20.1 0.0 0.0018 18.0 0.0 2.0 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_transf_20 PF00982.21 gi|312136907|ref|YP_004004244.1| - 0.014 14.1 0.0 0.024 13.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 20 DUF5507 PF17612.2 gi|312136907|ref|YP_004004244.1| - 0.024 14.3 0.2 0.67 9.7 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5507) DUF3492 PF11997.8 gi|312136907|ref|YP_004004244.1| - 0.028 14.2 1.7 0.15 11.7 0.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3492) Glyco_tran_28_C PF04101.16 gi|312136907|ref|YP_004004244.1| - 0.028 14.4 0.5 2.1 8.3 0.0 2.7 2 1 0 2 2 2 0 Glycosyltransferase family 28 C-terminal domain MAF_flag10 PF01973.18 gi|312136907|ref|YP_004004244.1| - 0.034 13.8 0.3 0.44 10.2 0.0 2.6 1 1 0 2 2 2 0 Protein of unknown function DUF115 MoaC PF01967.21 gi|312136908|ref|YP_004004245.1| - 3.8e-50 169.5 5.2 4.3e-50 169.3 5.2 1.0 1 0 0 1 1 1 1 MoaC family DEAD PF00270.29 gi|312136909|ref|YP_004004246.1| - 4.7e-17 62.3 0.1 2.5e-16 60.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|312136909|ref|YP_004004246.1| - 7.8e-12 45.5 1.0 8.4e-11 42.2 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|312136909|ref|YP_004004246.1| - 2.8e-09 37.3 0.8 2e-07 31.3 0.2 3.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|312136909|ref|YP_004004246.1| - 4.8e-08 33.5 0.4 2.7e-07 31.1 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|312136909|ref|YP_004004246.1| - 7e-06 25.7 0.8 8.9e-05 22.2 0.1 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|312136909|ref|YP_004004246.1| - 2.5e-05 24.3 0.1 0.00016 21.7 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|312136909|ref|YP_004004246.1| - 0.002 18.3 0.3 0.025 14.8 0.0 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|312136909|ref|YP_004004246.1| - 0.022 15.1 0.1 0.093 13.1 0.1 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix domain PhoH PF02562.16 gi|312136909|ref|YP_004004246.1| - 0.022 14.2 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|312136909|ref|YP_004004246.1| - 0.067 12.9 0.1 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2115 PF09888.9 gi|312136910|ref|YP_004004247.1| - 2.8e-52 177.6 5.6 3.1e-52 177.4 5.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) FRB_dom PF08771.11 gi|312136910|ref|YP_004004247.1| - 0.032 14.6 1.5 0.05 14.0 1.2 1.5 1 1 0 1 1 1 0 FKBP12-rapamycin binding domain zf-C4H2 PF10146.9 gi|312136910|ref|YP_004004247.1| - 0.11 12.7 2.6 0.17 12.2 2.6 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DUF2098 PF09871.9 gi|312136911|ref|YP_004004248.1| - 8.4e-27 93.4 3.8 9.8e-27 93.1 3.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YlaC PF10777.9 gi|312136911|ref|YP_004004248.1| - 0.035 14.0 0.9 0.045 13.6 0.9 1.1 1 0 0 1 1 1 0 Inner membrane protein YlaC YdfZ PF14001.6 gi|312136911|ref|YP_004004248.1| - 0.074 13.5 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 YdfZ protein SHOCT PF09851.9 gi|312136911|ref|YP_004004248.1| - 0.63 9.9 5.4 1.6 8.6 0.6 2.3 2 0 0 2 2 2 0 Short C-terminal domain PRC PF05239.16 gi|312136912|ref|YP_004004249.1| - 1.2e-13 50.9 1.9 1.6e-13 50.6 1.8 1.2 1 1 0 1 1 1 1 PRC-barrel domain Radical_SAM_C PF16199.5 gi|312136913|ref|YP_004004250.1| - 6.7e-28 96.5 0.5 1.4e-27 95.5 0.5 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|312136913|ref|YP_004004250.1| - 8.9e-23 81.5 0.2 8.9e-23 81.5 0.2 2.4 3 1 0 3 3 3 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|312136913|ref|YP_004004250.1| - 1.2e-07 31.9 0.2 3e-07 30.7 0.2 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|312136913|ref|YP_004004250.1| - 0.00035 20.5 0.1 0.0012 18.8 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF2192 PF09958.9 gi|312136913|ref|YP_004004250.1| - 0.043 13.4 4.2 0.32 10.5 1.3 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2192) zinc_ribbon_5 PF13719.6 gi|312136913|ref|YP_004004250.1| - 0.83 9.5 4.7 0.49 10.2 1.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|312136914|ref|YP_004004251.1| - 2.4e-21 76.8 0.2 3.7e-21 76.2 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily JHBP PF06585.11 gi|312136914|ref|YP_004004251.1| - 0.036 13.2 0.0 0.074 12.2 0.0 1.5 1 0 0 1 1 1 0 Haemolymph juvenile hormone binding protein (JHBP) Fer4_14 PF13394.6 gi|312136914|ref|YP_004004251.1| - 0.065 13.4 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain T2SSF PF00482.23 gi|312136915|ref|YP_004004252.1| - 9.1e-20 70.9 3.4 9.1e-20 70.9 3.4 2.5 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F EI24 PF07264.11 gi|312136915|ref|YP_004004252.1| - 1 9.6 10.5 1.7 8.8 7.1 2.5 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF2207 PF09972.9 gi|312136915|ref|YP_004004252.1| - 1.7 7.3 8.2 7.2 5.2 4.3 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Class_IIIsignal PF04021.12 gi|312136916|ref|YP_004004253.1| - 6.2e-08 32.4 4.2 1e-07 31.7 4.2 1.3 1 0 0 1 1 1 1 Class III signal peptide Flp1_like PF16982.5 gi|312136916|ref|YP_004004253.1| - 0.062 12.7 1.6 0.062 12.7 1.6 1.6 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain Aldedh PF00171.22 gi|312136917|ref|YP_004004254.1| - 2.1e-160 534.2 1.8 2.6e-160 533.9 1.8 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|312136917|ref|YP_004004254.1| - 2.8e-05 23.4 0.0 7.1e-05 22.0 0.0 1.7 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF4942 PF13708.6 gi|312136917|ref|YP_004004254.1| - 0.0037 17.2 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4942) DUF1487 PF07368.11 gi|312136917|ref|YP_004004254.1| - 0.035 13.5 0.2 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) DUF1104 PF06518.11 gi|312136917|ref|YP_004004254.1| - 0.069 13.5 2.6 0.12 12.7 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) Molybdopterin PF00384.22 gi|312136918|ref|YP_004004255.1| - 9.4e-108 360.9 0.6 1.1e-107 360.7 0.6 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|312136918|ref|YP_004004255.1| - 3.9e-32 110.6 0.0 7.6e-32 109.6 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|312136918|ref|YP_004004255.1| - 6.2e-20 70.9 2.6 7.2e-20 70.7 1.2 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain PEX-2N PF09263.10 gi|312136918|ref|YP_004004255.1| - 0.2 12.0 0.0 2.9 8.3 0.0 2.3 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal FrhB_FdhB_C PF04432.13 gi|312136919|ref|YP_004004256.1| - 8.8e-34 116.6 0.1 8.8e-34 116.6 0.1 2.2 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|312136919|ref|YP_004004256.1| - 2.4e-20 72.5 0.1 6.4e-20 71.1 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|312136919|ref|YP_004004256.1| - 2.3e-05 24.8 17.8 8.2e-05 23.1 15.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136919|ref|YP_004004256.1| - 9e-05 22.5 17.6 0.0018 18.3 0.9 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312136919|ref|YP_004004256.1| - 0.00015 22.1 17.4 0.00065 20.1 15.9 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136919|ref|YP_004004256.1| - 0.00016 21.5 17.7 0.0023 17.9 2.6 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|312136919|ref|YP_004004256.1| - 0.00019 21.7 2.4 0.00019 21.7 2.4 3.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136919|ref|YP_004004256.1| - 0.00024 21.6 18.3 0.073 13.7 18.7 3.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312136919|ref|YP_004004256.1| - 0.00075 19.2 5.2 0.00075 19.2 5.2 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312136919|ref|YP_004004256.1| - 0.00083 19.5 22.3 0.028 14.6 18.3 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136919|ref|YP_004004256.1| - 0.0038 17.2 4.3 0.0038 17.2 4.3 3.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|312136919|ref|YP_004004256.1| - 0.036 14.9 18.1 0.29 12.0 0.6 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312136919|ref|YP_004004256.1| - 0.18 12.7 24.2 0.52 11.3 3.7 3.8 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|312136919|ref|YP_004004256.1| - 0.64 10.2 12.0 2.1 8.6 0.9 3.4 3 1 0 3 3 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|312136920|ref|YP_004004257.1| - 3.4e-37 127.6 0.2 1.1e-36 126.0 0.2 1.9 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.22 gi|312136920|ref|YP_004004257.1| - 7.6e-33 113.3 0.4 4.8e-32 110.7 0.2 2.2 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4 PF00037.27 gi|312136920|ref|YP_004004257.1| - 1.5e-19 68.9 40.8 1.7e-07 30.7 4.6 5.8 5 0 0 5 5 5 3 4Fe-4S binding domain FrhB_FdhB_N PF04422.13 gi|312136920|ref|YP_004004257.1| - 1e-16 60.8 0.0 3.5e-16 59.1 0.0 1.9 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_2 PF12797.7 gi|312136920|ref|YP_004004257.1| - 1.5e-13 49.9 36.0 0.00014 21.7 2.4 5.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136920|ref|YP_004004257.1| - 7.5e-12 45.7 27.0 0.00095 19.7 0.2 5.0 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136920|ref|YP_004004257.1| - 1.7e-11 44.1 29.3 2.9e-06 27.3 13.4 4.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136920|ref|YP_004004257.1| - 4.5e-11 42.3 44.1 2.4e-05 24.2 2.7 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136920|ref|YP_004004257.1| - 4.6e-09 36.3 32.8 1.6e-06 28.2 11.7 3.9 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136920|ref|YP_004004257.1| - 7.2e-09 35.7 34.4 4.6e-07 29.9 11.6 4.6 3 2 2 5 5 5 4 4Fe-4S dicluster domain NIR_SIR_ferr PF03460.17 gi|312136920|ref|YP_004004257.1| - 1.4e-08 34.4 0.0 3.6e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_8 PF13183.6 gi|312136920|ref|YP_004004257.1| - 4.1e-08 33.6 21.0 0.11 13.0 0.4 5.4 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136920|ref|YP_004004257.1| - 1.7e-07 31.2 41.9 0.00065 20.0 1.6 6.1 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136920|ref|YP_004004257.1| - 3.8e-06 27.7 33.7 0.029 15.3 1.3 6.1 5 1 2 7 7 6 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|312136920|ref|YP_004004257.1| - 1.3e-05 25.7 29.5 0.014 15.9 0.3 5.5 4 1 2 6 6 6 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312136920|ref|YP_004004257.1| - 3e-05 24.2 19.5 0.00029 21.0 5.9 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|312136920|ref|YP_004004257.1| - 0.0067 17.2 30.0 0.06 14.2 1.2 5.0 6 1 0 6 6 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312136920|ref|YP_004004257.1| - 0.012 16.2 30.0 0.21 12.1 0.1 6.0 6 0 0 6 6 6 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|312136920|ref|YP_004004257.1| - 0.13 13.0 27.7 0.89 10.3 2.1 5.3 5 1 1 6 6 5 0 4Fe-4S single cluster domain Rubredoxin_C PF18267.1 gi|312136920|ref|YP_004004257.1| - 0.19 11.7 1.2 1.6 8.7 0.0 3.0 3 0 0 3 3 3 0 Rubredoxin NAD+ reductase C-terminal domain Amidohydro_1 PF01979.20 gi|312136921|ref|YP_004004258.1| - 8.5e-28 97.6 0.1 1.6e-27 96.8 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|312136921|ref|YP_004004258.1| - 3.9e-14 53.0 0.0 1.5e-06 28.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|312136921|ref|YP_004004258.1| - 0.07 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase Thioredoxin_8 PF13905.6 gi|312136921|ref|YP_004004258.1| - 0.12 12.7 0.2 0.32 11.4 0.2 1.7 1 0 0 1 1 1 0 Thioredoxin-like EF-hand_1 PF00036.32 gi|312136921|ref|YP_004004258.1| - 0.73 9.5 2.5 1.3 8.8 0.1 2.7 3 0 0 3 3 3 0 EF hand FAA_hydrolase PF01557.18 gi|312136922|ref|YP_004004259.1| - 3.7e-70 236.0 0.0 4.6e-70 235.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|312136922|ref|YP_004004259.1| - 0.0022 18.9 0.0 0.0044 17.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) Methyltransf_31 PF13847.6 gi|312136923|ref|YP_004004260.1| - 1.2e-22 80.4 0.1 1.4e-22 80.1 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312136923|ref|YP_004004260.1| - 5.3e-21 75.1 0.0 7.6e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312136923|ref|YP_004004260.1| - 9.6e-21 74.3 0.0 1.4e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312136923|ref|YP_004004260.1| - 1.2e-13 50.9 0.1 1.5e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|312136923|ref|YP_004004260.1| - 1.3e-13 51.5 0.0 2.4e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|312136923|ref|YP_004004260.1| - 1.1e-12 47.8 0.1 1.4e-12 47.5 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|312136923|ref|YP_004004260.1| - 3.7e-10 39.5 0.0 5e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|312136923|ref|YP_004004260.1| - 4.1e-09 36.2 0.7 6.1e-09 35.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|312136923|ref|YP_004004260.1| - 1.1e-07 31.9 0.3 4.8e-07 29.9 0.3 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.7 gi|312136923|ref|YP_004004260.1| - 1.1e-06 28.6 0.3 1.9e-06 27.9 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|312136923|ref|YP_004004260.1| - 1.2e-06 28.4 0.0 2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|312136923|ref|YP_004004260.1| - 6.6e-06 26.2 0.0 9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|312136923|ref|YP_004004260.1| - 7.1e-06 25.6 0.7 9.8e-06 25.1 0.6 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB GCD14 PF08704.10 gi|312136923|ref|YP_004004260.1| - 7.8e-06 25.7 0.0 0.00048 19.9 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.17 gi|312136923|ref|YP_004004260.1| - 0.00012 21.6 0.1 0.0023 17.4 0.1 2.2 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.20 gi|312136923|ref|YP_004004260.1| - 0.00017 21.0 0.1 0.001 18.5 0.1 1.9 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF938 PF06080.12 gi|312136923|ref|YP_004004260.1| - 0.00026 20.8 0.0 0.00033 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) DREV PF05219.12 gi|312136923|ref|YP_004004260.1| - 0.0004 19.6 0.1 0.00055 19.1 0.1 1.3 1 1 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|312136923|ref|YP_004004260.1| - 0.00052 19.7 0.0 0.00061 19.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Met_10 PF02475.16 gi|312136923|ref|YP_004004260.1| - 0.0006 19.6 0.3 0.00084 19.1 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.19 gi|312136923|ref|YP_004004260.1| - 0.0011 18.7 0.2 0.0045 16.8 0.0 1.8 1 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|312136923|ref|YP_004004260.1| - 0.0014 18.3 0.1 0.0045 16.7 0.0 1.7 1 1 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_PK PF05891.12 gi|312136923|ref|YP_004004260.1| - 0.0021 17.6 0.1 0.003 17.1 0.1 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_29 PF03141.16 gi|312136923|ref|YP_004004260.1| - 0.0066 15.0 0.0 0.0082 14.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase FtsJ PF01728.19 gi|312136923|ref|YP_004004260.1| - 0.0082 16.3 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|312136923|ref|YP_004004260.1| - 0.0089 15.2 0.2 0.011 14.8 0.2 1.1 1 0 0 1 1 1 1 Fibrillarin GidB PF02527.15 gi|312136923|ref|YP_004004260.1| - 0.009 15.4 0.3 0.014 14.7 0.3 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G adh_short PF00106.25 gi|312136923|ref|YP_004004260.1| - 0.018 14.5 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Cons_hypoth95 PF03602.15 gi|312136923|ref|YP_004004260.1| - 0.019 14.6 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_5 PF01795.19 gi|312136923|ref|YP_004004260.1| - 0.02 14.4 0.0 0.45 10.0 0.0 2.1 1 1 1 2 2 2 0 MraW methylase family Methyltransf_3 PF01596.17 gi|312136923|ref|YP_004004260.1| - 0.025 13.7 0.2 0.048 12.8 0.1 1.6 1 1 0 1 1 1 0 O-methyltransferase CheR PF01739.18 gi|312136923|ref|YP_004004260.1| - 0.049 13.1 0.2 0.53 9.7 0.1 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_30 PF05430.11 gi|312136923|ref|YP_004004260.1| - 0.16 11.9 0.0 2.5 8.0 0.0 2.7 2 1 0 2 2 2 0 S-adenosyl-L-methionine-dependent methyltransferase TP_methylase PF00590.20 gi|312136924|ref|YP_004004261.1| - 1.3e-21 77.6 0.0 1.5e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Fumerase_C PF05683.12 gi|312136926|ref|YP_004004263.1| - 8.9e-47 159.1 0.1 1.1e-46 158.8 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus FliMN_C PF01052.20 gi|312136926|ref|YP_004004263.1| - 0.032 14.2 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term DUF5379 PF17350.2 gi|312136927|ref|YP_004004264.1| - 7.6e-10 38.9 5.3 9.2e-10 38.7 5.3 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5379) TGT PF01702.18 gi|312136928|ref|YP_004004265.1| - 1.5e-12 47.4 0.0 3.3e-10 39.6 0.0 2.1 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase Amidohydro_1 PF01979.20 gi|312136929|ref|YP_004004266.1| - 1.2e-90 304.3 1.2 1.4e-90 304.1 1.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|312136929|ref|YP_004004266.1| - 1.1e-20 74.6 0.0 1.4e-14 54.5 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|312136929|ref|YP_004004266.1| - 0.011 15.1 0.1 0.031 13.6 0.0 1.7 2 0 0 2 2 2 0 Adenosine/AMP deaminase Lgl_C PF08596.10 gi|312136929|ref|YP_004004266.1| - 0.021 13.5 0.0 0.041 12.6 0.0 1.4 1 0 0 1 1 1 0 Lethal giant larvae(Lgl) like, C-terminal RNase_Zc3h12a_2 PF14626.6 gi|312136929|ref|YP_004004266.1| - 0.046 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Urease_alpha PF00449.20 gi|312136929|ref|YP_004004266.1| - 0.067 13.5 1.8 0.18 12.2 1.8 1.7 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain DUF4160 PF13711.6 gi|312136929|ref|YP_004004266.1| - 0.21 11.9 1.3 16 5.9 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4160) HTH_5 PF01022.20 gi|312136930|ref|YP_004004267.1| - 2e-08 34.0 0.1 3.6e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|312136930|ref|YP_004004267.1| - 6.1e-08 32.5 1.3 3.6e-07 30.0 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|312136930|ref|YP_004004267.1| - 5.2e-07 29.1 0.3 5.2e-07 29.1 0.3 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|312136930|ref|YP_004004267.1| - 2.9e-06 27.1 0.1 6.9e-06 25.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|312136930|ref|YP_004004267.1| - 1.9e-05 24.7 0.0 3.8e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|312136930|ref|YP_004004267.1| - 0.00058 19.6 0.2 0.0012 18.6 0.2 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|312136930|ref|YP_004004267.1| - 0.0011 18.8 0.2 0.0019 18.1 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|312136930|ref|YP_004004267.1| - 0.0012 18.9 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.6 gi|312136930|ref|YP_004004267.1| - 0.0069 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|312136930|ref|YP_004004267.1| - 0.013 15.3 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.14 gi|312136930|ref|YP_004004267.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GerE PF00196.19 gi|312136930|ref|YP_004004267.1| - 0.029 13.9 0.6 0.029 13.9 0.6 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family ArsR PF09824.9 gi|312136930|ref|YP_004004267.1| - 0.035 13.7 3.2 0.067 12.8 0.1 2.2 2 0 0 2 2 2 0 ArsR transcriptional regulator Mga PF05043.13 gi|312136930|ref|YP_004004267.1| - 0.046 14.3 0.1 0.11 13.1 0.1 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_DeoR PF08220.12 gi|312136930|ref|YP_004004267.1| - 0.05 13.4 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|312136930|ref|YP_004004267.1| - 0.05 13.6 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.7 gi|312136930|ref|YP_004004267.1| - 0.055 13.7 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|312136930|ref|YP_004004267.1| - 0.062 13.7 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|312136930|ref|YP_004004267.1| - 0.067 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|312136930|ref|YP_004004267.1| - 0.07 13.3 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|312136930|ref|YP_004004267.1| - 0.12 12.6 0.9 0.3 11.3 0.1 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_1 PF01527.20 gi|312136930|ref|YP_004004267.1| - 0.15 12.4 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_Crp_2 PF13545.6 gi|312136930|ref|YP_004004267.1| - 0.18 11.8 0.1 0.38 10.8 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Glyco_hydro_130 PF04041.13 gi|312136931|ref|YP_004004268.1| - 2.9e-33 115.2 1.4 4.2e-25 88.3 0.1 2.8 2 1 0 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_130 PF04041.13 gi|312136932|ref|YP_004004269.1| - 1.4e-102 342.9 2.5 1.5e-57 195.0 0.2 2.1 2 0 0 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_32N PF00251.20 gi|312136932|ref|YP_004004269.1| - 0.0036 16.9 0.0 3.3 7.2 0.0 2.8 2 1 0 3 3 3 2 Glycosyl hydrolases family 32 N-terminal domain DUF2070 PF09843.9 gi|312136933|ref|YP_004004270.1| - 3.1e-192 639.8 18.4 3.6e-192 639.6 18.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Ceramidase_alk PF04734.13 gi|312136933|ref|YP_004004270.1| - 0.073 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 Neutral/alkaline non-lysosomal ceramidase, N-terminal FbpA PF05833.11 gi|312136934|ref|YP_004004271.1| - 5.3e-92 308.9 24.3 7e-92 308.5 24.3 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|312136934|ref|YP_004004271.1| - 1.6e-32 112.4 0.0 9.4e-32 109.9 0.0 2.3 2 0 0 2 2 2 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|312136934|ref|YP_004004271.1| - 1.1e-05 25.3 0.0 1.1e-05 25.3 0.0 2.7 3 0 0 3 3 3 1 Formamidopyrimidine-DNA glycosylase H2TH domain NFACT-R_2 PF18297.1 gi|312136934|ref|YP_004004271.1| - 4.9e-05 23.5 0.0 0.00032 20.9 0.0 2.4 2 0 0 2 2 2 1 NFACT protein RNA binding domain Ribosomal_S13 PF00416.22 gi|312136934|ref|YP_004004271.1| - 0.00029 21.2 0.0 0.00029 21.2 0.0 3.4 3 1 0 4 4 4 1 Ribosomal protein S13/S18 ROS_MUCR PF05443.11 gi|312136934|ref|YP_004004271.1| - 0.021 14.9 1.0 0.074 13.1 0.4 2.2 2 1 0 2 2 2 0 ROS/MUCR transcriptional regulator protein FYRC PF05965.14 gi|312136934|ref|YP_004004271.1| - 1 9.5 3.2 2.7 8.2 0.3 2.6 1 1 1 2 2 2 0 F/Y rich C-terminus DUF2072 PF09845.9 gi|312136935|ref|YP_004004272.1| - 2e-14 54.0 5.7 5.7e-10 39.6 0.6 2.0 1 1 1 2 2 2 2 Zn-ribbon containing protein Methyltransf_FA PF12248.8 gi|312136935|ref|YP_004004272.1| - 0.065 13.6 0.1 0.078 13.3 0.1 1.2 1 0 0 1 1 1 0 Farnesoic acid 0-methyl transferase DUF2073 PF09846.9 gi|312136936|ref|YP_004004273.1| - 2.3e-35 120.6 3.1 2.8e-35 120.4 3.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|312136937|ref|YP_004004274.1| - 1.2e-18 67.3 0.0 1.5e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|312136937|ref|YP_004004274.1| - 3.9e-12 46.1 0.2 9.2e-06 25.3 0.0 3.4 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Septin PF00735.18 gi|312136937|ref|YP_004004274.1| - 3.9e-07 29.6 0.1 9.2e-07 28.4 0.0 1.6 2 0 0 2 2 2 1 Septin RsgA_GTPase PF03193.16 gi|312136937|ref|YP_004004274.1| - 4.1e-06 26.8 0.2 0.085 12.8 0.1 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|312136937|ref|YP_004004274.1| - 7.3e-06 25.6 0.2 5.6e-05 22.7 0.2 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 gi|312136937|ref|YP_004004274.1| - 1.1e-05 24.9 0.1 0.0049 16.3 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|312136937|ref|YP_004004274.1| - 3e-05 24.0 0.0 4.6e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|312136937|ref|YP_004004274.1| - 8.7e-05 22.7 0.1 0.031 14.5 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|312136937|ref|YP_004004274.1| - 0.00083 19.4 0.0 0.55 10.3 0.0 2.2 1 1 1 2 2 2 2 Dynamin family AAA PF00004.29 gi|312136937|ref|YP_004004274.1| - 0.0086 16.5 0.1 0.014 15.8 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRPRB PF09439.10 gi|312136937|ref|YP_004004274.1| - 0.012 15.1 0.0 2.6 7.4 0.0 2.3 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|312136937|ref|YP_004004274.1| - 0.028 14.1 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|312136937|ref|YP_004004274.1| - 0.032 14.6 0.0 0.05 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|312136937|ref|YP_004004274.1| - 0.04 14.4 0.1 0.073 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|312136937|ref|YP_004004274.1| - 0.044 14.3 0.0 0.063 13.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 gi|312136937|ref|YP_004004274.1| - 0.05 13.5 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|312136937|ref|YP_004004274.1| - 0.051 12.7 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_18 PF13238.6 gi|312136937|ref|YP_004004274.1| - 0.075 13.6 0.0 0.17 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|312136937|ref|YP_004004274.1| - 0.087 12.7 0.1 0.22 11.4 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Hydrolase_6 PF13344.6 gi|312136937|ref|YP_004004274.1| - 0.093 12.9 0.0 0.26 11.4 0.0 1.7 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase cobW PF02492.19 gi|312136937|ref|YP_004004274.1| - 0.13 11.9 0.1 2.9 7.4 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Lactamase_B_3 PF13483.6 gi|312136938|ref|YP_004004275.1| - 1.4e-29 103.1 0.0 1.9e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|312136938|ref|YP_004004275.1| - 4e-22 78.7 0.1 5.7e-22 78.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|312136938|ref|YP_004004275.1| - 1.8e-12 47.7 0.4 5.4e-12 46.1 0.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily UPF0242 PF06785.11 gi|312136939|ref|YP_004004276.1| - 0.00021 21.5 0.0 0.00034 20.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus TssO PF17561.2 gi|312136939|ref|YP_004004276.1| - 0.00028 21.0 5.4 0.0045 17.1 0.1 2.7 2 1 1 3 3 3 1 Type VI secretion system, TssO O-antigen_lig PF13425.6 gi|312136939|ref|YP_004004276.1| - 0.0019 17.1 0.9 0.0026 16.7 0.9 1.2 1 0 0 1 1 1 1 O-antigen ligase like membrane protein DUF87 PF01935.17 gi|312136939|ref|YP_004004276.1| - 0.0049 17.0 3.4 0.009 16.1 3.4 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain Wzy_C PF04932.15 gi|312136939|ref|YP_004004276.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 O-Antigen ligase Phage_holin_3_6 PF07332.11 gi|312136939|ref|YP_004004276.1| - 0.024 14.6 0.2 0.047 13.7 0.2 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Halogen_Hydrol PF10112.9 gi|312136939|ref|YP_004004276.1| - 0.026 14.6 0.6 0.11 12.6 0.6 1.9 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Blt1_C PF17183.4 gi|312136939|ref|YP_004004276.1| - 0.053 13.1 3.3 0.2 11.3 0.1 2.8 3 0 0 3 3 3 0 Get5 carboxyl domain DUF2304 PF10066.9 gi|312136939|ref|YP_004004276.1| - 0.074 13.3 1.4 0.16 12.2 1.4 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) COG5 PF10392.9 gi|312136939|ref|YP_004004276.1| - 0.15 12.2 2.3 0.24 11.6 1.3 1.9 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DAAD PF18752.1 gi|312136939|ref|YP_004004276.1| - 0.17 11.7 3.2 0.25 11.2 3.2 1.2 1 0 0 1 1 1 0 Dictyosteliid AID/APOBEC-like Deaminase Syntaxin_2 PF14523.6 gi|312136939|ref|YP_004004276.1| - 0.49 10.8 9.1 0.66 10.4 6.5 2.5 2 1 1 3 3 3 0 Syntaxin-like protein Atg14 PF10186.9 gi|312136939|ref|YP_004004276.1| - 3.2 6.8 9.0 4.6 6.2 9.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Translin PF01997.16 gi|312136940|ref|YP_004004277.1| - 1.4e-17 64.4 0.5 6.3e-16 59.0 0.5 2.1 1 1 0 1 1 1 1 Translin family YtxC PF08812.11 gi|312136940|ref|YP_004004277.1| - 0.03 13.9 1.9 0.036 13.7 0.4 1.9 2 1 0 2 2 2 0 YtxC-like family PhoU PF01895.19 gi|312136940|ref|YP_004004277.1| - 0.052 14.0 9.5 5 7.7 0.1 3.3 2 1 1 3 3 3 0 PhoU domain PAH PF02671.21 gi|312136940|ref|YP_004004277.1| - 0.11 12.7 0.4 0.47 10.6 0.2 2.1 1 1 1 2 2 2 0 Paired amphipathic helix repeat Stathmin PF00836.19 gi|312136940|ref|YP_004004277.1| - 0.78 9.7 5.6 1.3 9.0 5.6 1.4 1 0 0 1 1 1 0 Stathmin family FapA PF03961.13 gi|312136940|ref|YP_004004277.1| - 1.9 7.0 4.4 3 6.3 4.4 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A PIG-L PF02585.17 gi|312136941|ref|YP_004004278.1| - 1.3e-27 97.0 0.0 2.3e-27 96.2 0.0 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DUF3463 PF11946.8 gi|312136941|ref|YP_004004278.1| - 0.012 15.4 0.2 0.021 14.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) RuvC PF02075.17 gi|312136941|ref|YP_004004278.1| - 0.1 12.4 0.2 0.25 11.2 0.2 1.6 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC Hydrolase PF00702.26 gi|312136942|ref|YP_004004279.1| - 7.6e-21 75.4 0.8 1.3e-19 71.3 0.8 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|312136942|ref|YP_004004279.1| - 5.6e-05 23.0 1.5 0.16 11.7 0.0 3.5 3 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|312136942|ref|YP_004004279.1| - 5.7e-05 23.3 0.2 0.00039 20.6 0.1 2.3 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|312136942|ref|YP_004004279.1| - 0.00057 20.0 0.1 0.0087 16.1 0.0 2.8 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|312136942|ref|YP_004004279.1| - 0.0018 18.7 0.0 0.016 15.6 0.0 2.4 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase DUF1456 PF07308.13 gi|312136942|ref|YP_004004279.1| - 0.0021 18.3 0.0 0.06 13.7 0.1 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1456) Metallophos_2 PF12850.7 gi|312136942|ref|YP_004004279.1| - 0.012 15.8 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain AhpC-TSA PF00578.21 gi|312136942|ref|YP_004004279.1| - 0.061 13.3 0.2 0.92 9.4 0.0 2.7 2 1 1 3 3 3 0 AhpC/TSA family SpoU_sub_bind PF08032.12 gi|312136942|ref|YP_004004279.1| - 0.19 12.1 1.3 2.1 8.7 0.1 3.1 2 2 2 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding DNA_photolyase PF00875.18 gi|312136942|ref|YP_004004279.1| - 0.19 11.7 0.0 0.43 10.6 0.0 1.6 1 0 0 1 1 1 0 DNA photolyase HTH_IclR PF09339.10 gi|312136942|ref|YP_004004279.1| - 0.19 11.5 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_3 PF01381.22 gi|312136943|ref|YP_004004280.1| - 1.6e-12 47.3 0.5 2.7e-12 46.5 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|312136943|ref|YP_004004280.1| - 9.2e-06 25.6 1.7 2.2e-05 24.4 1.7 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|312136943|ref|YP_004004280.1| - 4.1e-05 23.3 2.1 0.0001 22.1 0.5 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|312136943|ref|YP_004004280.1| - 0.00016 22.0 0.0 0.00028 21.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain SBP PF03110.14 gi|312136943|ref|YP_004004280.1| - 0.0068 16.7 2.0 0.012 16.0 2.0 1.4 1 0 0 1 1 1 1 SBP domain DUF4428 PF14471.6 gi|312136943|ref|YP_004004280.1| - 0.01 15.7 1.4 0.034 14.1 1.4 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) CRCB PF02537.15 gi|312136944|ref|YP_004004281.1| - 2.9e-24 85.2 9.4 3.7e-24 84.9 9.4 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF190 PF02641.15 gi|312136945|ref|YP_004004282.1| - 1.4e-35 121.5 0.1 1.6e-35 121.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 HMD PF03201.16 gi|312136946|ref|YP_004004283.1| - 4.2e-40 135.9 0.9 7.5e-40 135.1 0.2 1.8 2 0 0 2 2 2 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase IlvN PF07991.12 gi|312136946|ref|YP_004004283.1| - 0.0048 16.5 0.2 0.039 13.5 0.1 2.4 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|312136946|ref|YP_004004283.1| - 0.019 15.2 0.0 0.041 14.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|312136946|ref|YP_004004283.1| - 0.026 13.5 0.0 0.047 12.7 0.0 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase Glyco_hydro_4 PF02056.16 gi|312136946|ref|YP_004004283.1| - 0.046 13.3 0.0 0.24 10.9 0.0 2.1 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase Fibrillarin_2 PF10113.9 gi|312136947|ref|YP_004004284.1| - 2.7e-271 900.5 1.1 3e-271 900.3 1.1 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein DUF1188 PF06690.11 gi|312136947|ref|YP_004004284.1| - 0.02 14.5 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) AP_endonuc_2 PF01261.24 gi|312136947|ref|YP_004004284.1| - 0.14 11.6 0.1 18 4.7 0.0 2.3 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel FlpD PF02662.16 gi|312136948|ref|YP_004004285.1| - 5.2e-58 194.4 0.0 5.9e-58 194.2 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FrhB_FdhB_C PF04432.13 gi|312136949|ref|YP_004004286.1| - 6.8e-38 129.9 0.1 6.8e-38 129.9 0.1 2.3 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|312136949|ref|YP_004004286.1| - 1.5e-22 79.6 0.0 1.1e-21 76.7 0.0 2.1 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|312136949|ref|YP_004004286.1| - 6e-06 26.3 16.7 0.00039 20.5 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136949|ref|YP_004004286.1| - 2.8e-05 24.2 28.9 0.00074 19.6 18.6 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312136949|ref|YP_004004286.1| - 5.3e-05 22.9 15.3 0.00037 20.2 4.8 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312136949|ref|YP_004004286.1| - 0.00013 22.3 15.9 0.00013 22.3 15.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136949|ref|YP_004004286.1| - 0.00018 21.9 16.9 0.00018 21.9 16.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136949|ref|YP_004004286.1| - 0.00024 21.0 17.9 0.013 15.6 1.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136949|ref|YP_004004286.1| - 0.00048 20.7 20.9 0.0061 17.1 2.5 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136949|ref|YP_004004286.1| - 0.00094 19.5 3.0 0.00094 19.5 3.0 3.4 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|312136949|ref|YP_004004286.1| - 0.016 15.2 5.0 0.016 15.2 5.0 3.4 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312136949|ref|YP_004004286.1| - 0.02 15.1 10.2 0.23 11.7 0.3 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136949|ref|YP_004004286.1| - 0.026 15.5 3.8 0.026 15.5 3.8 4.1 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136949|ref|YP_004004286.1| - 0.029 15.3 22.1 0.46 11.4 3.5 3.7 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|312136949|ref|YP_004004286.1| - 0.064 13.0 7.7 0.46 10.3 0.2 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|312136949|ref|YP_004004286.1| - 0.079 13.5 17.1 1.5 9.4 7.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|312136949|ref|YP_004004286.1| - 0.088 13.0 15.2 0.41 10.8 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|312136949|ref|YP_004004286.1| - 0.16 12.9 20.5 0.44 11.4 7.0 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|312136950|ref|YP_004004287.1| - 7.5e-20 71.3 0.2 2.6e-10 39.8 0.0 2.1 1 1 0 2 2 2 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|312136950|ref|YP_004004287.1| - 4.8e-12 45.7 2.8 1.1e-11 44.5 2.8 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain VAPB_antitox PF02697.14 gi|312136950|ref|YP_004004287.1| - 2.2 9.1 8.0 0.5 11.2 2.4 2.6 3 0 0 3 3 3 0 Putative antitoxin FlpD PF02662.16 gi|312136951|ref|YP_004004288.1| - 1.5e-56 189.7 0.1 1.7e-56 189.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Oxidored_q6 PF01058.22 gi|312136952|ref|YP_004004289.1| - 1.6e-30 105.6 0.0 3.5e-30 104.5 0.0 1.6 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|312136953|ref|YP_004004290.1| - 6e-43 147.5 0.2 6.7e-21 74.8 0.0 3.1 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|312136953|ref|YP_004004290.1| - 0.01 15.0 0.0 1.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Fer4 PF00037.27 gi|312136954|ref|YP_004004291.1| - 3.9e-67 219.6 131.0 2.3e-08 33.5 4.9 12.6 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312136954|ref|YP_004004291.1| - 3.7e-53 177.9 92.6 1.4e-10 41.6 9.8 7.8 6 1 2 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136954|ref|YP_004004291.1| - 6.9e-44 147.8 177.3 3.2e-09 36.8 6.4 8.2 3 3 8 11 11 11 11 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312136954|ref|YP_004004291.1| - 1.7e-43 145.0 122.8 2.3e-07 30.6 2.1 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312136954|ref|YP_004004291.1| - 9.2e-41 138.6 93.4 9.4e-05 23.3 1.2 12.2 9 2 3 12 12 12 12 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|312136954|ref|YP_004004291.1| - 1.8e-38 130.4 110.5 5.5e-09 36.0 11.2 8.5 2 2 9 11 11 11 11 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312136954|ref|YP_004004291.1| - 7.5e-34 113.7 118.4 4.4e-05 23.3 1.4 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312136954|ref|YP_004004291.1| - 1.9e-32 111.2 103.7 9.6e-11 41.7 9.5 8.4 5 3 4 9 9 9 9 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312136954|ref|YP_004004291.1| - 1e-23 82.4 146.2 0.01 16.7 4.2 12.3 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312136954|ref|YP_004004291.1| - 1.7e-21 76.4 99.0 7.3e-06 26.3 7.3 10.1 7 2 1 8 8 8 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136954|ref|YP_004004291.1| - 3.2e-18 64.7 113.5 0.011 16.1 2.4 12.3 12 0 0 12 12 12 9 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312136954|ref|YP_004004291.1| - 1.1e-17 64.3 101.8 9.1e-05 22.9 8.7 10.6 5 4 3 8 8 8 6 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312136954|ref|YP_004004291.1| - 9.7e-11 41.9 100.8 0.00022 21.4 6.9 9.5 1 1 8 9 9 9 6 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312136954|ref|YP_004004291.1| - 1.1e-06 29.3 91.6 0.089 13.5 0.6 12.5 9 3 2 12 12 12 6 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|312136954|ref|YP_004004291.1| - 0.00011 22.7 11.8 0.00096 19.7 2.1 12.3 10 2 2 12 12 12 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|312136954|ref|YP_004004291.1| - 0.026 15.4 104.3 0.037 14.9 1.9 11.7 7 4 6 14 14 14 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|312136954|ref|YP_004004291.1| - 0.029 14.5 1.2 0.029 14.5 1.2 7.4 2 1 6 8 8 8 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S MCR_beta PF02241.18 gi|312136955|ref|YP_004004292.1| - 2.7e-142 472.7 2.7 4.5e-142 472.0 2.7 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|312136955|ref|YP_004004292.1| - 3.6e-86 287.4 4.1 6.6e-86 286.6 4.1 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Phe_tRNA-synt_N PF02912.18 gi|312136955|ref|YP_004004292.1| - 0.067 13.1 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain MCR_D PF02505.14 gi|312136956|ref|YP_004004293.1| - 1.9e-55 186.7 0.5 2.1e-55 186.5 0.5 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_gamma PF02240.16 gi|312136957|ref|YP_004004294.1| - 4.8e-136 451.8 0.5 5.5e-136 451.6 0.5 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit IBV_3B PF03622.13 gi|312136957|ref|YP_004004294.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 IBV 3B protein MCR_alpha_N PF02745.15 gi|312136958|ref|YP_004004295.1| - 2.2e-152 506.0 0.0 2.8e-152 505.6 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|312136958|ref|YP_004004295.1| - 4.9e-70 233.9 2.8 1.1e-69 232.8 2.8 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.15 gi|312136958|ref|YP_004004295.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain CooT PF10133.9 gi|312136959|ref|YP_004004296.1| - 2.6e-20 72.5 6.4 2.8e-20 72.3 6.4 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT dUTPase PF00692.19 gi|312136960|ref|YP_004004297.1| - 2.9e-09 36.7 0.0 4.7e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|312136960|ref|YP_004004297.1| - 0.0087 14.9 0.1 0.076 11.8 0.1 2.0 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HisG PF01634.18 gi|312136961|ref|YP_004004298.1| - 1.6e-55 187.5 0.9 2.3e-55 186.9 0.9 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|312136961|ref|YP_004004298.1| - 6.9e-28 96.6 1.0 1.5e-27 95.5 1.0 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|312136961|ref|YP_004004298.1| - 2.6e-05 24.3 1.3 0.0048 16.9 1.3 3.1 1 1 0 1 1 1 1 NMT1/THI5 like RNA_pol_Rpb4 PF03874.16 gi|312136961|ref|YP_004004298.1| - 0.0027 18.0 1.5 0.0045 17.3 1.5 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 TMF_TATA_bd PF12325.8 gi|312136961|ref|YP_004004298.1| - 0.015 15.5 3.0 0.026 14.7 3.0 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF4352 PF11611.8 gi|312136962|ref|YP_004004299.1| - 0.15 12.3 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) CCG PF02754.16 gi|312136963|ref|YP_004004300.1| - 6.8e-42 141.6 0.5 1.5e-21 76.4 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain DUF2024 PF09630.10 gi|312136963|ref|YP_004004300.1| - 0.058 13.3 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) Fer4_8 PF13183.6 gi|312136964|ref|YP_004004301.1| - 5.8e-11 42.7 8.3 1.2e-10 41.7 8.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312136964|ref|YP_004004301.1| - 5.6e-09 36.0 6.9 9.8e-09 35.3 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312136964|ref|YP_004004301.1| - 2.2e-08 34.5 9.3 4.1e-08 33.6 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312136964|ref|YP_004004301.1| - 5.8e-08 32.7 20.4 6.9e-07 29.3 10.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312136964|ref|YP_004004301.1| - 1.2e-06 28.9 9.8 3.4e-06 27.5 9.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312136964|ref|YP_004004301.1| - 0.0014 18.7 6.1 0.0037 17.4 6.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312136964|ref|YP_004004301.1| - 0.0037 17.7 3.5 0.0037 17.7 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|312136964|ref|YP_004004301.1| - 0.0043 17.1 12.6 0.19 11.9 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|312136964|ref|YP_004004301.1| - 0.0068 16.2 12.7 0.21 11.4 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312136964|ref|YP_004004301.1| - 0.025 14.8 7.5 1.4 9.2 0.9 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|312136964|ref|YP_004004301.1| - 0.033 14.0 6.7 0.076 12.8 0.7 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|312136964|ref|YP_004004301.1| - 0.047 14.6 14.3 1.4 9.9 3.0 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|312136964|ref|YP_004004301.1| - 0.25 12.4 17.0 0.78 10.8 3.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|312136964|ref|YP_004004301.1| - 3.1 8.7 12.3 13 6.7 3.4 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Putative_PNPOx PF01243.20 gi|312136966|ref|YP_004004303.1| - 2.3e-08 34.1 0.0 4e-08 33.3 0.0 1.4 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|312136966|ref|YP_004004303.1| - 0.058 13.2 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) QRPTase_C PF01729.19 gi|312136967|ref|YP_004004304.1| - 1e-60 204.3 1.4 1.5e-60 203.8 1.4 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|312136967|ref|YP_004004304.1| - 1.1e-28 99.1 0.5 3e-28 97.7 0.3 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peripla_BP_4 PF13407.6 gi|312136967|ref|YP_004004304.1| - 0.012 15.3 0.2 0.022 14.3 0.2 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain Lactamase_B_2 PF12706.7 gi|312136968|ref|YP_004004305.1| - 2.5e-21 76.1 0.0 1.5e-10 41.0 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|312136968|ref|YP_004004305.1| - 2.6e-12 47.2 0.0 1.7e-10 41.3 0.0 2.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|312136968|ref|YP_004004305.1| - 4.3e-06 26.3 0.0 8.3e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|312136968|ref|YP_004004305.1| - 0.015 14.5 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II MS_channel PF00924.18 gi|312136969|ref|YP_004004306.1| - 4.3e-45 153.8 6.7 6.1e-45 153.3 6.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3822 PF12864.7 gi|312136969|ref|YP_004004306.1| - 0.0064 15.7 0.0 0.0094 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3822) FtsX PF02687.21 gi|312136969|ref|YP_004004306.1| - 5.1 7.6 10.4 82 3.8 9.1 2.2 1 1 1 2 2 2 0 FtsX-like permease family Sortase PF04203.13 gi|312136970|ref|YP_004004307.1| - 1.7e-12 47.2 0.0 2.9e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Sortase domain NadA PF02445.16 gi|312136971|ref|YP_004004308.1| - 7e-111 370.2 8.2 7.9e-111 370.0 8.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Asparaginase PF00710.20 gi|312136971|ref|YP_004004308.1| - 0.002 17.7 0.0 0.015 14.8 0.0 2.1 2 0 0 2 2 2 1 Asparaginase, N-terminal XPG_I PF00867.18 gi|312136971|ref|YP_004004308.1| - 0.016 15.6 0.9 0.05 13.9 0.0 2.3 3 0 0 3 3 3 0 XPG I-region Saccharop_dh_N PF04455.12 gi|312136972|ref|YP_004004309.1| - 7.5e-32 109.7 0.1 1.6e-31 108.7 0.1 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region FBPase_3 PF01950.16 gi|312136973|ref|YP_004004310.1| - 5.6e-191 634.4 0.0 6.3e-191 634.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF5616 PF18481.1 gi|312136974|ref|YP_004004311.1| - 3.1e-49 166.9 1.5 4.5e-49 166.4 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|312136974|ref|YP_004004311.1| - 2.6e-23 81.4 4.1 4.6e-23 80.7 4.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) PhoU_div PF01865.16 gi|312136975|ref|YP_004004312.1| - 4e-55 186.5 10.5 4.7e-55 186.2 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|312136975|ref|YP_004004312.1| - 3e-06 27.6 8.0 0.0002 21.8 0.8 2.6 2 1 0 2 2 2 2 PhoU domain FliD_C PF07195.12 gi|312136975|ref|YP_004004312.1| - 0.014 14.8 2.1 2.6 7.4 0.0 2.5 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus FliJ PF02050.16 gi|312136975|ref|YP_004004312.1| - 0.015 15.5 2.5 0.097 12.9 0.2 2.3 2 0 0 2 2 2 0 Flagellar FliJ protein Mis14 PF08641.12 gi|312136975|ref|YP_004004312.1| - 0.018 15.3 1.0 0.018 15.3 1.0 2.1 2 0 0 2 2 2 0 Kinetochore protein Mis14 like Vps51 PF08700.11 gi|312136975|ref|YP_004004312.1| - 0.044 13.9 2.4 1.8 8.7 0.1 2.9 2 2 0 2 2 2 0 Vps51/Vps67 Uds1 PF15456.6 gi|312136975|ref|YP_004004312.1| - 0.12 12.5 4.3 0.56 10.4 0.1 2.6 2 1 0 2 2 2 0 Up-regulated During Septation DUF16 PF01519.16 gi|312136975|ref|YP_004004312.1| - 0.17 12.4 10.1 4.7 7.8 4.9 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF948 PF06103.11 gi|312136975|ref|YP_004004312.1| - 0.38 11.1 3.9 2 8.7 0.7 3.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.11 gi|312136975|ref|YP_004004312.1| - 0.4 11.1 8.8 2.2 8.7 1.2 3.8 4 1 0 4 4 4 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.7 gi|312136975|ref|YP_004004312.1| - 0.43 10.7 17.1 2.2 8.5 5.0 2.8 2 1 0 2 2 2 0 Tropomyosin like Vac_Fusion PF02346.16 gi|312136975|ref|YP_004004312.1| - 0.7 9.6 7.0 4.3 7.0 0.3 3.9 3 2 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 CorA PF01544.18 gi|312136975|ref|YP_004004312.1| - 0.97 8.7 5.9 2.7 7.2 0.2 2.5 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein YkuI_C PF10388.9 gi|312136975|ref|YP_004004312.1| - 1.2 9.0 8.0 0.34 10.7 3.8 2.1 1 1 0 2 2 2 0 EAL-domain associated signalling protein domain Spectrin PF00435.21 gi|312136975|ref|YP_004004312.1| - 1.4 9.4 6.4 2.6 8.6 0.6 2.5 2 0 0 2 2 2 0 Spectrin repeat G10 PF01125.17 gi|312136975|ref|YP_004004312.1| - 1.6 8.5 4.0 0.67 9.7 0.6 2.0 2 0 0 2 2 2 0 G10 protein TMPIT PF07851.13 gi|312136975|ref|YP_004004312.1| - 1.8 7.8 8.6 1.7 7.9 0.4 2.1 1 1 0 2 2 2 0 TMPIT-like protein DUF2951 PF11166.8 gi|312136975|ref|YP_004004312.1| - 2.8 8.2 9.7 0.81 9.9 4.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) Swi5 PF07061.11 gi|312136975|ref|YP_004004312.1| - 4.6 7.4 9.8 18 5.5 0.1 3.0 3 1 0 3 3 3 0 Swi5 ABC_tran_CTD PF16326.5 gi|312136975|ref|YP_004004312.1| - 6 7.2 13.5 3.6 7.9 1.0 2.9 3 1 0 3 3 3 0 ABC transporter C-terminal domain PHM7_cyt PF14703.6 gi|312136975|ref|YP_004004312.1| - 7.7 6.7 12.7 2.2 8.5 0.8 2.8 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter DUF357 PF04010.13 gi|312136976|ref|YP_004004313.1| - 1.9e-17 63.1 0.1 2.3e-17 62.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CDP-OH_P_transf PF01066.21 gi|312136977|ref|YP_004004314.1| - 4e-12 46.7 1.5 4e-12 46.7 1.5 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase UPF0139 PF03669.13 gi|312136977|ref|YP_004004314.1| - 0.0004 20.2 0.4 0.014 15.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0139) Flavi_capsid PF01003.19 gi|312136977|ref|YP_004004314.1| - 0.07 12.9 1.0 2.7 7.8 0.0 2.5 2 1 0 2 2 2 0 Flavivirus capsid protein C NAD_synthase PF02540.17 gi|312136978|ref|YP_004004315.1| - 4.5e-97 323.9 0.0 5.1e-97 323.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|312136978|ref|YP_004004315.1| - 1.3e-11 43.9 0.0 1.3e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|312136978|ref|YP_004004315.1| - 0.00031 20.3 0.0 0.0015 18.1 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|312136978|ref|YP_004004315.1| - 0.00038 20.2 0.0 0.0006 19.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Trp_repressor PF01371.19 gi|312136978|ref|YP_004004315.1| - 0.0028 17.7 0.0 0.0057 16.8 0.0 1.4 1 0 0 1 1 1 1 Trp repressor protein ThiI PF02568.14 gi|312136978|ref|YP_004004315.1| - 0.019 14.5 0.1 0.056 13.0 0.0 1.8 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Phage_terminase PF10668.9 gi|312136978|ref|YP_004004315.1| - 0.075 13.1 0.5 10 6.2 0.0 2.6 3 0 0 3 3 3 0 Phage terminase small subunit HTH_23 PF13384.6 gi|312136978|ref|YP_004004315.1| - 0.11 12.3 0.0 0.92 9.4 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain CutA1 PF03091.15 gi|312136979|ref|YP_004004316.1| - 1e-33 115.1 2.9 1.1e-33 115.0 2.9 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein ATP-synt_F PF01990.17 gi|312136979|ref|YP_004004316.1| - 0.0063 16.8 4.4 0.044 14.1 0.9 2.5 1 1 1 2 2 2 1 ATP synthase (F/14-kDa) subunit P2 PF07194.11 gi|312136979|ref|YP_004004316.1| - 0.0074 16.3 1.9 0.047 13.7 0.6 2.0 1 1 1 2 2 2 1 P2 response regulator binding domain Pox_vIL-18BP PF05566.12 gi|312136979|ref|YP_004004316.1| - 0.039 14.2 0.1 0.063 13.5 0.1 1.7 1 1 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein Ribosomal_S13 PF00416.22 gi|312136979|ref|YP_004004316.1| - 0.041 14.3 0.3 0.054 13.9 0.3 1.1 1 0 0 1 1 1 0 Ribosomal protein S13/S18 tRNA-synt_1 PF00133.22 gi|312136980|ref|YP_004004317.1| - 2.8e-71 240.5 10.0 1.6e-63 214.9 7.3 2.7 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|312136980|ref|YP_004004317.1| - 1.2e-30 106.5 4.4 3.6e-30 104.9 4.4 1.9 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|312136980|ref|YP_004004317.1| - 3.5e-25 88.6 15.4 8.5e-13 47.8 3.1 3.7 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|312136980|ref|YP_004004317.1| - 9.6e-10 38.3 5.0 2.4e-09 37.0 0.1 2.9 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|312136980|ref|YP_004004317.1| - 7e-09 35.4 2.8 0.0003 20.2 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain AsnC_trans_reg2 PF17805.1 gi|312136980|ref|YP_004004317.1| - 0.013 15.7 0.0 0.062 13.5 0.0 2.2 1 0 0 1 1 1 0 AsnC-like ligand binding domain Lipase_GDSL PF00657.22 gi|312136980|ref|YP_004004317.1| - 0.03 14.3 1.3 2.1 8.3 0.4 3.4 3 1 0 3 3 3 0 GDSL-like Lipase/Acylhydrolase Phage_min_cap2 PF06152.11 gi|312136980|ref|YP_004004317.1| - 0.47 9.3 2.7 4.4 6.1 0.1 2.5 2 0 0 2 2 2 0 Phage minor capsid protein 2 Hexapep PF00132.24 gi|312136981|ref|YP_004004318.1| - 1.6e-28 97.4 22.6 2.9e-08 33.1 0.8 4.8 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|312136981|ref|YP_004004318.1| - 8.1e-14 51.1 17.7 1.1e-06 28.3 0.5 4.7 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|312136981|ref|YP_004004318.1| - 0.043 14.1 1.0 0.28 11.5 0.4 2.1 2 0 0 2 2 2 0 Polymer-forming cytoskeletal DUF4954 PF16314.5 gi|312136981|ref|YP_004004318.1| - 0.23 9.5 4.1 0.37 8.9 3.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) tRNA_Me_trans PF03054.16 gi|312136982|ref|YP_004004319.1| - 7.5e-07 28.3 4.3 1e-05 24.5 4.3 2.2 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|312136982|ref|YP_004004319.1| - 4.1e-06 26.5 0.1 1.3e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|312136982|ref|YP_004004319.1| - 3e-05 23.6 0.0 0.0001 21.8 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|312136982|ref|YP_004004319.1| - 0.00017 21.4 0.0 0.00045 20.0 0.0 1.7 1 0 0 1 1 1 1 PP-loop family KH_4 PF13083.6 gi|312136982|ref|YP_004004319.1| - 0.016 15.0 1.0 0.034 14.0 1.0 1.5 1 0 0 1 1 1 0 KH domain Tn7_Tnp_TnsA_C PF08721.11 gi|312136982|ref|YP_004004319.1| - 0.031 14.9 6.2 1.8 9.3 0.0 4.0 4 0 0 4 4 4 0 TnsA endonuclease C terminal KH_2 PF07650.17 gi|312136982|ref|YP_004004319.1| - 0.64 9.9 6.8 0.072 12.9 1.6 2.2 2 0 0 2 2 2 0 KH domain DUF3096 PF11295.8 gi|312136983|ref|YP_004004320.1| - 0.00015 21.3 13.7 0.00018 21.1 13.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3096) OapA_N PF08525.11 gi|312136983|ref|YP_004004320.1| - 0.017 15.0 1.1 0.03 14.3 1.1 1.4 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif DUF308 PF03729.13 gi|312136983|ref|YP_004004320.1| - 0.024 14.9 13.4 0.043 14.1 13.4 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) SLATT_6 PF18169.1 gi|312136983|ref|YP_004004320.1| - 0.057 13.0 4.3 0.062 12.9 4.3 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF5362 PF17319.2 gi|312136983|ref|YP_004004320.1| - 0.64 9.9 9.5 0.94 9.4 9.5 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5362) PGPGW PF09656.10 gi|312136983|ref|YP_004004320.1| - 1 8.9 13.2 0.82 9.2 4.4 2.2 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) DUF202 PF02656.15 gi|312136983|ref|YP_004004320.1| - 3 8.3 6.5 2.2 8.8 1.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) ATP-grasp_3 PF02655.14 gi|312136984|ref|YP_004004321.1| - 1.2e-14 54.7 1.0 1.9e-14 54.0 1.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|312136984|ref|YP_004004321.1| - 4e-09 36.3 0.1 7.8e-09 35.3 0.1 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|312136984|ref|YP_004004321.1| - 1.6e-07 31.1 0.1 2.9e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|312136984|ref|YP_004004321.1| - 6.2e-07 29.2 0.0 3.5e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|312136984|ref|YP_004004321.1| - 6.4e-07 29.1 0.3 1.1e-06 28.4 0.3 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|312136984|ref|YP_004004321.1| - 1.3e-05 25.1 0.9 2.3e-05 24.3 0.9 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.6 gi|312136984|ref|YP_004004321.1| - 0.00083 19.0 0.7 0.019 14.5 0.4 2.6 2 1 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|312136984|ref|YP_004004321.1| - 0.00096 18.8 0.2 0.0045 16.6 0.1 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|312136984|ref|YP_004004321.1| - 0.0073 15.6 0.4 0.27 10.4 0.4 2.2 1 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp Glycos_transf_4 PF00953.21 gi|312136985|ref|YP_004004322.1| - 5.4e-27 94.7 10.9 6.8e-26 91.1 9.5 3.5 4 0 0 4 4 4 2 Glycosyl transferase family 4 MraY_sig1 PF10555.9 gi|312136985|ref|YP_004004322.1| - 0.015 14.8 2.1 0.041 13.4 2.1 1.8 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Mur_ligase_M PF08245.12 gi|312136986|ref|YP_004004323.1| - 3.6e-26 92.4 3.9 3.6e-26 92.4 3.9 2.4 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|312136986|ref|YP_004004323.1| - 7.5e-10 38.9 0.0 1e-08 35.3 0.0 2.8 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain CLP1_P PF16575.5 gi|312136986|ref|YP_004004323.1| - 0.025 14.4 1.3 0.056 13.2 0.1 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PTCB-BRCT PF12738.7 gi|312136986|ref|YP_004004323.1| - 0.12 12.4 1.5 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 twin BRCT domain ISG65-75 PF11727.8 gi|312136986|ref|YP_004004323.1| - 0.12 11.6 2.9 0.22 10.7 2.9 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein PCNA_N PF00705.18 gi|312136986|ref|YP_004004323.1| - 0.21 11.3 2.1 0.41 10.4 1.6 1.7 1 1 0 1 1 1 0 Proliferating cell nuclear antigen, N-terminal domain zf-ribbon_3 PF13248.6 gi|312136988|ref|YP_004004325.1| - 0.01 15.2 2.1 1.1 8.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|312136988|ref|YP_004004325.1| - 0.029 14.4 0.2 0.053 13.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|312136988|ref|YP_004004325.1| - 0.047 13.4 2.0 2.2 8.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HalOD1 PF18545.1 gi|312136988|ref|YP_004004325.1| - 0.079 13.2 0.2 2.7 8.3 0.0 2.5 2 0 0 2 2 2 0 Halobacterial output domain 1 DUF1451 PF07295.11 gi|312136988|ref|YP_004004325.1| - 0.22 11.6 0.1 0.38 10.8 0.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF3797 PF12677.7 gi|312136988|ref|YP_004004325.1| - 2 8.4 3.9 31 4.6 0.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DNA_ligase_ZBD PF03119.16 gi|312136988|ref|YP_004004325.1| - 2.2 8.4 4.0 2.5 8.2 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0051 PF01458.17 gi|312136989|ref|YP_004004326.1| - 3.1e-58 197.1 0.6 3.8e-58 196.7 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|312136990|ref|YP_004004327.1| - 7.1e-22 78.4 0.0 9.8e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312136990|ref|YP_004004327.1| - 8.4e-08 32.4 2.3 0.0045 16.8 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312136990|ref|YP_004004327.1| - 2.9e-06 26.9 0.1 8.4e-05 22.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|312136990|ref|YP_004004327.1| - 0.0023 17.6 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|312136990|ref|YP_004004327.1| - 0.0099 16.4 1.2 0.04 14.4 0.3 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|312136990|ref|YP_004004327.1| - 0.016 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|312136990|ref|YP_004004327.1| - 0.037 13.6 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|312136990|ref|YP_004004327.1| - 0.089 12.4 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain UPF0254 PF06787.11 gi|312136991|ref|YP_004004328.1| - 7.5e-71 237.2 0.2 8.4e-71 237.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.17 gi|312136991|ref|YP_004004328.1| - 0.0045 16.6 0.3 0.11 12.1 0.1 2.1 2 0 0 2 2 2 1 Competence-damaged protein ThiF PF00899.21 gi|312136992|ref|YP_004004329.1| - 0.044 13.1 0.5 0.083 12.2 0.5 1.6 1 1 0 1 1 1 0 ThiF family CoA_binding PF02629.19 gi|312136992|ref|YP_004004329.1| - 0.075 13.7 0.6 0.36 11.6 0.5 2.3 1 1 0 1 1 1 0 CoA binding domain UPA_2 PF17809.1 gi|312136992|ref|YP_004004329.1| - 0.083 12.7 0.0 0.18 11.6 0.0 1.5 2 0 0 2 2 2 0 UPA domain NIF3 PF01784.18 gi|312136993|ref|YP_004004330.1| - 1.5e-36 126.3 0.1 2.4e-28 99.4 0.0 2.1 1 1 1 2 2 2 2 NIF3 (NGG1p interacting factor 3) DUF2267 PF10025.9 gi|312136993|ref|YP_004004330.1| - 0.086 13.1 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DUF1188 PF06690.11 gi|312136994|ref|YP_004004331.1| - 1.3e-97 326.2 4.5 1.5e-97 326.1 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Spermine_synth PF01564.17 gi|312136994|ref|YP_004004331.1| - 0.0016 17.9 2.2 0.019 14.4 0.2 2.2 1 1 1 2 2 2 2 Spermine/spermidine synthase domain SPOB_ab PF14682.6 gi|312136994|ref|YP_004004331.1| - 0.13 12.3 0.4 2.5 8.2 0.4 2.4 1 1 0 1 1 1 0 Sporulation initiation phospho-transferase B, C-terminal HTH_56 PF18662.1 gi|312136994|ref|YP_004004331.1| - 0.28 11.3 6.4 1.7 8.7 0.1 2.8 3 0 0 3 3 3 0 Cch helix turn helix domain DUF3236 PF11576.8 gi|312136995|ref|YP_004004332.1| - 1.2e-74 249.1 1.9 1.3e-74 249.0 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) PLATZ PF04640.14 gi|312136995|ref|YP_004004332.1| - 0.018 15.6 0.2 0.028 15.0 0.2 1.4 1 0 0 1 1 1 0 PLATZ transcription factor Shikimate_DH PF01488.20 gi|312136995|ref|YP_004004332.1| - 0.045 13.8 0.7 3.1 7.9 0.1 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Radical_SAM PF04055.21 gi|312136996|ref|YP_004004333.1| - 3.1e-13 50.4 0.4 2e-12 47.8 0.1 2.2 3 0 0 3 3 3 1 Radical SAM superfamily BATS PF06968.13 gi|312136996|ref|YP_004004333.1| - 1e-07 32.0 0.0 3e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain PRC PF05239.16 gi|312136997|ref|YP_004004334.1| - 1.7e-10 40.8 2.6 2e-10 40.6 2.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain NTP_transf_3 PF12804.7 gi|312136998|ref|YP_004004335.1| - 1.6e-18 67.6 0.0 1.9e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|312136998|ref|YP_004004335.1| - 7.6e-12 45.6 0.1 8.9e-12 45.4 0.1 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|312136998|ref|YP_004004335.1| - 1.5e-10 41.1 0.0 2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|312136998|ref|YP_004004335.1| - 4.5e-07 29.8 0.0 6e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|312136998|ref|YP_004004335.1| - 3.6e-05 23.1 0.1 8.7e-05 21.8 0.1 1.6 2 0 0 2 2 2 1 Guanylyl transferase CofC like DUF2114 PF09887.9 gi|312136999|ref|YP_004004336.1| - 6.8e-228 756.6 0.5 8.2e-228 756.3 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) MtrH PF02007.18 gi|312137000|ref|YP_004004337.1| - 4.1e-152 505.5 2.3 4.6e-152 505.3 2.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.13 gi|312137001|ref|YP_004004338.1| - 4.1e-29 100.2 1.8 4.7e-29 100.0 1.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2207 PF09972.9 gi|312137001|ref|YP_004004338.1| - 0.011 14.6 0.0 0.011 14.5 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Meckelin PF09773.9 gi|312137001|ref|YP_004004338.1| - 0.18 9.9 0.0 0.19 9.8 0.0 1.0 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) Adeno_E3_CR2 PF02439.15 gi|312137001|ref|YP_004004338.1| - 0.41 10.4 4.3 0.73 9.6 4.3 1.4 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 MtrF PF09472.10 gi|312137002|ref|YP_004004339.1| - 8.7e-25 85.9 0.6 1e-24 85.7 0.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DHDPS PF00701.22 gi|312137002|ref|YP_004004339.1| - 0.15 10.7 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family Flp1_like PF16982.5 gi|312137002|ref|YP_004004339.1| - 0.24 10.8 3.4 0.39 10.2 3.4 1.3 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain MtrA PF04208.14 gi|312137003|ref|YP_004004340.1| - 8.5e-90 299.0 4.6 1.2e-89 298.5 4.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Ribosomal_L18_c PF14204.6 gi|312137003|ref|YP_004004340.1| - 0.058 14.3 2.1 0.13 13.3 2.1 1.5 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region MinC_N PF05209.13 gi|312137003|ref|YP_004004340.1| - 0.14 12.1 0.1 0.25 11.3 0.1 1.4 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain DUF5388 PF17363.2 gi|312137003|ref|YP_004004340.1| - 0.14 12.3 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5388) MtrB PF05440.12 gi|312137004|ref|YP_004004341.1| - 2.5e-35 120.8 0.1 2.8e-35 120.6 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrG PF04210.13 gi|312137004|ref|YP_004004341.1| - 1.9 8.4 4.9 2 8.3 0.5 2.5 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G MtrC PF04211.13 gi|312137005|ref|YP_004004342.1| - 3.5e-95 318.1 22.1 4.3e-95 317.8 22.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrD PF04207.12 gi|312137006|ref|YP_004004343.1| - 4.5e-85 284.8 21.6 5.2e-85 284.6 21.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D FixP_N PF14715.6 gi|312137006|ref|YP_004004343.1| - 0.25 11.1 6.8 0.61 9.9 0.5 3.2 3 0 0 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP MccV PF17508.2 gi|312137006|ref|YP_004004343.1| - 0.42 11.2 0.2 0.42 11.2 0.2 2.6 2 1 1 3 3 3 0 Microcin V bacteriocin MtrE PF04206.12 gi|312137007|ref|YP_004004344.1| - 3.6e-116 387.2 13.7 4.2e-116 387.0 13.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E RseC_MucC PF04246.12 gi|312137007|ref|YP_004004344.1| - 0.056 13.4 0.2 0.056 13.4 0.2 3.1 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC TMEM208_SND2 PF05620.11 gi|312137007|ref|YP_004004344.1| - 0.18 11.6 0.1 0.18 11.6 0.1 1.7 2 0 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 DUF2721 PF11026.8 gi|312137007|ref|YP_004004344.1| - 0.3 11.0 4.5 1.1 9.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) MCR_alpha_N PF02745.15 gi|312137008|ref|YP_004004345.1| - 2.8e-152 505.7 0.1 3.7e-152 505.3 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|312137008|ref|YP_004004345.1| - 1.8e-69 232.0 3.4 3.9e-69 231.0 3.4 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|312137008|ref|YP_004004345.1| - 0.008 16.2 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 BofC C-terminal domain VHP PF02209.19 gi|312137008|ref|YP_004004345.1| - 0.14 12.2 2.3 0.24 11.5 1.5 1.8 2 0 0 2 2 2 0 Villin headpiece domain MCR_gamma PF02240.16 gi|312137009|ref|YP_004004346.1| - 1.5e-135 450.1 0.6 1.7e-135 450.0 0.6 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|312137010|ref|YP_004004347.1| - 1.9e-05 23.9 0.7 4e-05 22.8 0.7 1.6 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|312137011|ref|YP_004004348.1| - 1.8e-50 170.5 2.2 3.2e-50 169.7 2.2 1.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|312137012|ref|YP_004004349.1| - 1.6e-141 470.1 4.4 2.2e-141 469.7 4.4 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|312137012|ref|YP_004004349.1| - 2e-84 281.8 1.6 3.6e-84 280.9 1.6 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Radical_SAM PF04055.21 gi|312137013|ref|YP_004004350.1| - 5.7e-15 56.1 1.6 3.4e-14 53.6 1.0 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|312137014|ref|YP_004004351.1| - 7.5e-33 114.3 1.1 7.6e-32 111.0 0.1 2.7 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|312137014|ref|YP_004004351.1| - 6.8e-05 22.9 0.0 0.0013 18.7 0.0 2.8 2 1 0 2 2 2 1 B12 binding domain ComA PF02679.15 gi|312137014|ref|YP_004004351.1| - 0.051 13.0 0.3 0.59 9.5 0.1 2.4 2 1 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Cation_efflux PF01545.21 gi|312137015|ref|YP_004004352.1| - 9e-50 169.2 14.8 1.1e-49 168.9 14.8 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|312137015|ref|YP_004004352.1| - 3.9e-19 68.6 1.6 7.4e-19 67.7 0.9 1.9 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter Nitro_FeMo-Co PF02579.17 gi|312137015|ref|YP_004004352.1| - 4.5e-09 36.5 0.2 9.4e-09 35.5 0.2 1.6 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Oxidored_q4 PF00507.19 gi|312137015|ref|YP_004004352.1| - 0.13 12.4 1.8 15 5.8 0.4 2.4 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TctB PF07331.11 gi|312137015|ref|YP_004004352.1| - 5.1 7.4 8.2 10 6.4 7.5 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family ParA PF10609.9 gi|312137016|ref|YP_004004353.1| - 5.3e-98 327.4 0.5 6.2e-98 327.2 0.5 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|312137016|ref|YP_004004353.1| - 4.8e-15 55.7 0.0 1.7e-14 54.0 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|312137016|ref|YP_004004353.1| - 3.2e-11 43.5 1.7 5.2e-10 39.5 1.7 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|312137016|ref|YP_004004353.1| - 4.9e-05 22.7 4.7 0.00056 19.2 0.3 2.8 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|312137016|ref|YP_004004353.1| - 0.0002 21.3 0.7 0.0047 16.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|312137016|ref|YP_004004353.1| - 0.00033 20.0 0.0 0.0005 19.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|312137016|ref|YP_004004353.1| - 0.00043 19.8 1.2 0.053 13.0 0.2 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RsgA_GTPase PF03193.16 gi|312137016|ref|YP_004004353.1| - 0.00055 19.9 1.4 0.012 15.6 0.2 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|312137016|ref|YP_004004353.1| - 0.028 14.0 0.2 0.17 11.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain Ribosomal_L4 PF00573.22 gi|312137016|ref|YP_004004353.1| - 0.033 13.9 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family NB-ARC PF00931.22 gi|312137016|ref|YP_004004353.1| - 0.056 12.6 0.4 0.098 11.8 0.4 1.4 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|312137016|ref|YP_004004353.1| - 0.069 13.0 0.4 0.65 9.9 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|312137016|ref|YP_004004353.1| - 0.097 13.2 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1610 PF07754.11 gi|312137016|ref|YP_004004353.1| - 0.098 12.6 2.0 0.19 11.7 2.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) RuvB_N PF05496.12 gi|312137016|ref|YP_004004353.1| - 0.12 12.1 0.3 0.8 9.4 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF134 PF02001.16 gi|312137017|ref|YP_004004354.1| - 2.7e-32 111.2 0.2 3.6e-32 110.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|312137017|ref|YP_004004354.1| - 8.7e-05 22.1 0.2 0.00013 21.6 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|312137017|ref|YP_004004354.1| - 0.00088 19.2 0.2 0.0011 18.9 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 gi|312137017|ref|YP_004004354.1| - 0.0012 18.5 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain DZR PF12773.7 gi|312137017|ref|YP_004004354.1| - 0.0026 17.7 0.1 0.0034 17.4 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|312137017|ref|YP_004004354.1| - 0.0051 17.5 0.7 0.0056 17.4 0.7 1.3 1 1 0 1 1 1 1 zinc-ribbon family HTH_31 PF13560.6 gi|312137017|ref|YP_004004354.1| - 0.0069 16.7 0.0 0.0081 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|312137017|ref|YP_004004354.1| - 0.011 15.7 2.2 0.014 15.4 2.1 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RWP-RK PF02042.15 gi|312137017|ref|YP_004004354.1| - 0.011 15.6 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 RWP-RK domain HTH_10 PF04967.12 gi|312137017|ref|YP_004004354.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|312137017|ref|YP_004004354.1| - 0.017 14.6 0.1 0.03 13.8 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|312137017|ref|YP_004004354.1| - 0.023 14.7 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_37 PF13744.6 gi|312137017|ref|YP_004004354.1| - 0.024 14.6 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|312137017|ref|YP_004004354.1| - 0.06 13.4 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix SpoIIID PF12116.8 gi|312137017|ref|YP_004004354.1| - 0.081 13.0 0.3 1 9.5 0.1 2.1 1 1 1 2 2 2 0 Stage III sporulation protein D zf-C2HC PF01530.18 gi|312137017|ref|YP_004004354.1| - 0.54 10.5 4.3 1 9.6 4.3 1.5 1 0 0 1 1 1 0 Zinc finger, C2HC type zf-RRN7 PF11781.8 gi|312137017|ref|YP_004004354.1| - 0.57 9.9 4.7 0.56 9.9 0.5 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|312137017|ref|YP_004004354.1| - 0.96 9.5 7.8 2 8.5 1.1 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF166 PF02593.14 gi|312137018|ref|YP_004004355.1| - 8.2e-60 202.1 3.0 9.3e-60 201.9 3.0 1.0 1 0 0 1 1 1 1 Domain of unknown function CbiM PF01891.16 gi|312137019|ref|YP_004004356.1| - 3.6e-61 206.6 22.9 4.1e-61 206.4 22.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|312137020|ref|YP_004004357.1| - 3.6e-13 49.2 0.7 6.6e-12 45.2 0.7 2.1 1 1 0 1 1 1 1 PDGLE domain OppC_N PF12911.7 gi|312137020|ref|YP_004004357.1| - 0.43 10.6 4.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CbiQ PF02361.16 gi|312137021|ref|YP_004004358.1| - 3.6e-46 157.5 10.5 5.3e-46 157.0 10.5 1.2 1 0 0 1 1 1 1 Cobalt transport protein MutS_V PF00488.21 gi|312137023|ref|YP_004004360.1| - 1.5e-11 44.7 0.1 3.3e-11 43.6 0.1 1.6 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|312137023|ref|YP_004004360.1| - 4.1e-06 27.3 5.8 5.7e-06 26.8 2.7 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|312137023|ref|YP_004004360.1| - 1.4e-05 24.7 1.8 0.2 11.6 0.4 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_28 PF13521.6 gi|312137023|ref|YP_004004360.1| - 3.1e-05 24.3 0.0 5.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|312137023|ref|YP_004004360.1| - 5.9e-05 23.1 1.3 0.00023 21.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain HHH_3 PF12836.7 gi|312137023|ref|YP_004004360.1| - 7.8e-05 22.9 0.7 0.0035 17.6 0.7 3.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif AAA_29 PF13555.6 gi|312137023|ref|YP_004004360.1| - 0.00065 19.4 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain HHH_2 PF12826.7 gi|312137023|ref|YP_004004360.1| - 0.0031 17.6 3.6 0.063 13.4 0.4 3.3 2 1 1 3 3 3 2 Helix-hairpin-helix motif AAA PF00004.29 gi|312137023|ref|YP_004004360.1| - 0.006 17.0 0.2 0.006 17.0 0.2 4.6 5 1 0 5 5 5 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|312137023|ref|YP_004004360.1| - 0.014 15.3 0.0 0.014 15.3 0.0 3.7 3 1 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|312137023|ref|YP_004004360.1| - 0.018 15.3 1.0 0.14 12.4 0.2 2.9 3 1 0 3 3 2 0 AAA domain AAA_23 PF13476.6 gi|312137023|ref|YP_004004360.1| - 0.02 15.4 0.0 0.02 15.4 0.0 4.7 3 1 1 4 4 2 0 AAA domain HHH_8 PF14716.6 gi|312137023|ref|YP_004004360.1| - 0.052 13.9 1.9 0.15 12.4 0.2 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain AAA_16 PF13191.6 gi|312137023|ref|YP_004004360.1| - 0.13 12.7 0.1 0.74 10.2 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF1801 PF08818.11 gi|312137023|ref|YP_004004360.1| - 0.3 11.6 5.5 0.79 10.3 0.4 3.2 3 0 0 3 3 2 0 Domain of unknown function (DU1801) HHH_6 PF14579.6 gi|312137023|ref|YP_004004360.1| - 0.42 10.9 2.7 2 8.7 0.1 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF29 PF01724.16 gi|312137023|ref|YP_004004360.1| - 5.9 7.1 9.2 2.3 8.4 2.9 3.0 2 1 0 2 2 2 0 Domain of unknown function DUF29 Thymidylate_kin PF02223.17 gi|312137024|ref|YP_004004361.1| - 8.7e-54 182.0 0.5 9.8e-54 181.8 0.5 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|312137024|ref|YP_004004361.1| - 1.5e-09 38.0 2.4 1.5e-08 34.8 2.4 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|312137024|ref|YP_004004361.1| - 2.7e-06 28.0 0.3 4.5e-06 27.2 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|312137024|ref|YP_004004361.1| - 6.3e-05 23.4 0.7 0.00036 21.0 0.2 2.3 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|312137024|ref|YP_004004361.1| - 0.00063 19.9 2.0 0.0062 16.7 0.2 2.4 2 1 0 2 2 2 1 Shikimate kinase AAA_28 PF13521.6 gi|312137024|ref|YP_004004361.1| - 0.00084 19.6 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain PPK2 PF03976.14 gi|312137024|ref|YP_004004361.1| - 0.0011 18.6 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) AAA_33 PF13671.6 gi|312137024|ref|YP_004004361.1| - 0.0016 18.6 0.0 0.0084 16.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain SseB_C PF14581.6 gi|312137024|ref|YP_004004361.1| - 0.016 15.3 0.2 0.042 14.0 0.2 1.7 1 1 0 1 1 1 0 SseB protein C-terminal domain Fer4_NifH PF00142.18 gi|312137024|ref|YP_004004361.1| - 0.023 14.1 1.8 0.38 10.1 0.4 2.1 1 1 1 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA PF00004.29 gi|312137024|ref|YP_004004361.1| - 0.033 14.6 2.6 0.78 10.2 2.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|312137024|ref|YP_004004361.1| - 0.033 13.3 0.1 0.059 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TIR_2 PF13676.6 gi|312137024|ref|YP_004004361.1| - 0.049 14.2 0.1 2.4 8.8 0.0 2.3 1 1 1 2 2 2 0 TIR domain Peptidase_C14 PF00656.22 gi|312137024|ref|YP_004004361.1| - 0.091 12.7 0.1 0.36 10.8 0.1 2.1 1 1 0 1 1 1 0 Caspase domain KTI12 PF08433.10 gi|312137024|ref|YP_004004361.1| - 0.23 10.9 3.8 4.2 6.7 0.3 2.6 2 1 0 2 2 2 0 Chromatin associated protein KTI12 Prefoldin_3 PF13758.6 gi|312137025|ref|YP_004004362.1| - 0.016 15.2 0.0 0.017 15.2 0.0 1.0 1 0 0 1 1 1 0 Prefoldin subunit Ribosomal_S30AE PF02482.19 gi|312137025|ref|YP_004004362.1| - 0.027 15.2 0.0 0.033 15.0 0.0 1.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein SHMT PF00464.19 gi|312137026|ref|YP_004004363.1| - 1.3e-84 284.1 0.0 1.7e-84 283.7 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|312137026|ref|YP_004004363.1| - 5.5e-12 45.5 0.0 2.4e-11 43.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|312137026|ref|YP_004004363.1| - 2e-05 24.0 0.0 6.6e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|312137026|ref|YP_004004363.1| - 2e-05 23.8 0.0 3.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|312137026|ref|YP_004004363.1| - 3.2e-05 23.0 0.0 6.4e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V TMEM219 PF14940.6 gi|312137026|ref|YP_004004363.1| - 0.21 11.1 0.1 0.35 10.4 0.1 1.2 1 0 0 1 1 1 0 Transmembrane 219 Flavoprotein PF02441.19 gi|312137027|ref|YP_004004364.1| - 6.8e-18 64.9 0.0 1.2e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|312137027|ref|YP_004004364.1| - 1e-08 34.6 19.1 4.4e-08 32.6 3.6 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312137027|ref|YP_004004364.1| - 5.3e-08 33.3 6.5 1.5e-05 25.5 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137027|ref|YP_004004364.1| - 5.9e-08 32.5 14.3 8.5e-06 25.6 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|312137027|ref|YP_004004364.1| - 7.4e-07 28.9 11.0 8.4e-05 22.4 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312137027|ref|YP_004004364.1| - 1.2e-06 28.5 25.0 0.00027 21.0 2.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312137027|ref|YP_004004364.1| - 1.5e-06 29.0 10.2 8e-05 23.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|312137027|ref|YP_004004364.1| - 1.6e-06 28.1 23.7 0.00011 22.2 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312137027|ref|YP_004004364.1| - 5.8e-06 26.8 3.6 0.0022 18.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312137027|ref|YP_004004364.1| - 1.4e-05 25.4 3.4 0.0015 18.9 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137027|ref|YP_004004364.1| - 3.6e-05 23.9 12.3 0.00022 21.5 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137027|ref|YP_004004364.1| - 0.00092 19.3 9.3 0.0094 16.1 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137027|ref|YP_004004364.1| - 0.0021 18.9 4.8 0.0021 18.9 4.8 3.1 3 1 0 3 3 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312137027|ref|YP_004004364.1| - 0.052 13.7 10.6 1.2 9.4 8.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312137027|ref|YP_004004364.1| - 1.4 9.7 13.3 6.5 7.6 0.3 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|312137027|ref|YP_004004364.1| - 7 7.3 18.0 0.28 11.7 1.2 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I DUF192 PF02643.15 gi|312137028|ref|YP_004004365.1| - 9.6e-17 60.9 0.0 1.2e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.11 gi|312137028|ref|YP_004004365.1| - 0.088 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) ArsA_ATPase PF02374.15 gi|312137029|ref|YP_004004366.1| - 4.2e-124 413.7 4.7 4.9e-124 413.5 4.7 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|312137029|ref|YP_004004366.1| - 2e-17 63.7 1.0 4.7e-17 62.5 0.1 1.9 1 1 1 2 2 2 1 AAA domain ParA PF10609.9 gi|312137029|ref|YP_004004366.1| - 1.5e-11 44.2 3.8 5.6e-07 29.2 0.5 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|312137029|ref|YP_004004366.1| - 2.2e-11 43.9 0.0 6.6e-11 42.4 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PhoH PF02562.16 gi|312137029|ref|YP_004004366.1| - 8.5e-06 25.4 0.1 2.1e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 PhoH-like protein CBP_BcsQ PF06564.12 gi|312137029|ref|YP_004004366.1| - 9.6e-06 25.2 0.1 0.00047 19.7 0.0 2.2 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|312137029|ref|YP_004004366.1| - 1.2e-05 25.0 3.3 2.7e-05 23.8 0.1 2.7 2 1 1 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|312137029|ref|YP_004004366.1| - 1.2e-05 25.0 3.4 0.0024 17.5 0.4 2.6 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|312137029|ref|YP_004004366.1| - 0.00019 21.0 1.8 0.0011 18.6 1.3 2.3 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|312137029|ref|YP_004004366.1| - 0.0003 20.1 0.2 0.0003 20.1 0.2 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.6 gi|312137029|ref|YP_004004366.1| - 0.009 15.8 0.0 0.024 14.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|312137029|ref|YP_004004366.1| - 0.018 14.1 0.5 0.068 12.1 0.0 2.2 2 1 1 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|312137029|ref|YP_004004366.1| - 0.024 13.9 0.1 0.063 12.6 0.1 1.7 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|312137029|ref|YP_004004366.1| - 0.031 14.2 0.0 0.21 11.5 0.0 2.2 2 1 0 2 2 2 0 NTPase ATP_bind_1 PF03029.17 gi|312137029|ref|YP_004004366.1| - 0.041 13.7 2.5 0.35 10.6 0.1 2.6 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|312137029|ref|YP_004004366.1| - 0.046 13.1 2.1 0.063 12.6 0.2 2.0 2 1 0 2 2 2 0 KaiC PIF1 PF05970.14 gi|312137029|ref|YP_004004366.1| - 0.12 11.5 5.2 0.14 11.3 0.2 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_30 PF13604.6 gi|312137029|ref|YP_004004366.1| - 0.13 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|312137029|ref|YP_004004366.1| - 0.14 12.5 0.0 0.3 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RNase_3_N PF18497.1 gi|312137029|ref|YP_004004366.1| - 0.15 12.3 2.0 1 9.6 0.2 2.6 3 0 0 3 3 3 0 Ribonuclease III N-terminal domain Polysacc_synt PF01943.17 gi|312137030|ref|YP_004004367.1| - 4.1e-46 157.6 38.2 4.1e-46 157.6 38.2 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|312137030|ref|YP_004004367.1| - 2.2e-18 66.7 25.6 2.2e-18 66.7 25.6 4.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|312137030|ref|YP_004004367.1| - 6.7e-17 61.6 23.7 6.7e-17 61.6 23.7 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|312137030|ref|YP_004004367.1| - 2.7e-07 29.6 50.6 2.7e-07 29.6 50.6 1.9 1 1 1 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|312137030|ref|YP_004004367.1| - 3.5e-07 30.0 15.6 3.5e-07 30.0 15.6 4.5 4 2 0 4 4 4 2 MatE UDPG_MGDP_dh_N PF03721.14 gi|312137031|ref|YP_004004368.1| - 3.2e-63 212.7 0.1 6.3e-63 211.7 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|312137031|ref|YP_004004368.1| - 2.5e-38 130.7 0.0 1.2e-34 118.8 0.0 3.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|312137031|ref|YP_004004368.1| - 1.2e-36 124.7 0.1 3.3e-36 123.4 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain F420_oxidored PF03807.17 gi|312137031|ref|YP_004004368.1| - 4.2e-10 40.1 0.0 4.8e-06 27.1 0.0 3.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|312137031|ref|YP_004004368.1| - 2.9e-06 27.6 0.0 7.6e-05 22.9 0.0 2.7 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|312137031|ref|YP_004004368.1| - 0.00011 22.2 0.0 0.00036 20.5 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|312137031|ref|YP_004004368.1| - 0.00017 21.0 0.1 0.0023 17.3 0.0 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|312137031|ref|YP_004004368.1| - 0.00023 20.9 0.0 0.0076 15.9 0.0 2.6 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|312137031|ref|YP_004004368.1| - 0.00037 21.0 0.2 0.05 14.2 0.0 3.6 5 0 0 5 5 5 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|312137031|ref|YP_004004368.1| - 0.0037 16.5 0.1 0.073 12.3 0.0 2.5 2 2 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|312137031|ref|YP_004004368.1| - 0.0042 17.1 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus OTCace PF00185.24 gi|312137031|ref|YP_004004368.1| - 0.0066 16.5 0.0 0.26 11.4 0.0 2.9 3 0 0 3 3 3 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AlaDh_PNT_C PF01262.21 gi|312137031|ref|YP_004004368.1| - 0.011 15.0 0.0 0.03 13.6 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|312137031|ref|YP_004004368.1| - 0.048 14.1 0.0 1.5 9.3 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding N6_N4_Mtase PF01555.18 gi|312137031|ref|YP_004004368.1| - 0.057 13.1 2.3 0.039 13.6 0.4 1.7 2 0 0 2 2 2 0 DNA methylase Rossmann-like PF10727.9 gi|312137031|ref|YP_004004368.1| - 0.073 12.9 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 1 0 Rossmann-like domain TrkA_N PF02254.18 gi|312137031|ref|YP_004004368.1| - 0.09 13.0 0.1 4.6 7.5 0.0 3.5 4 1 0 4 4 3 0 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|312137032|ref|YP_004004369.1| - 2.5e-55 188.2 0.0 3.4e-55 187.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|312137032|ref|YP_004004369.1| - 2.1e-51 174.7 0.0 2.5e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|312137032|ref|YP_004004369.1| - 5.9e-10 38.8 0.0 7.6e-06 25.3 0.0 2.4 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|312137032|ref|YP_004004369.1| - 6e-09 35.3 0.0 8.3e-09 34.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|312137032|ref|YP_004004369.1| - 3.4e-07 29.6 0.0 4.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|312137032|ref|YP_004004369.1| - 5.8e-05 22.4 0.0 0.084 12.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|312137032|ref|YP_004004369.1| - 0.0068 15.9 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|312137032|ref|YP_004004369.1| - 0.13 12.4 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glycos_transf_2 PF00535.26 gi|312137033|ref|YP_004004370.1| - 3.2e-07 30.3 0.1 4.4e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137033|ref|YP_004004370.1| - 0.073 13.0 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Mtc PF03820.17 gi|312137033|ref|YP_004004370.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Tricarboxylate carrier Epimerase PF01370.21 gi|312137034|ref|YP_004004371.1| - 4.4e-59 199.9 0.0 5.5e-59 199.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|312137034|ref|YP_004004371.1| - 1.5e-53 182.4 0.1 8.7e-53 179.8 0.1 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|312137034|ref|YP_004004371.1| - 4.4e-24 85.0 0.2 6.1e-24 84.5 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|312137034|ref|YP_004004371.1| - 6.5e-20 71.4 0.9 8.5e-19 67.8 0.9 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|312137034|ref|YP_004004371.1| - 1.1e-13 50.9 0.0 1.8e-13 50.3 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|312137034|ref|YP_004004371.1| - 1.7e-07 30.7 0.2 0.00011 21.5 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|312137034|ref|YP_004004371.1| - 2e-06 27.8 0.0 2.8e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 gi|312137034|ref|YP_004004371.1| - 0.00032 20.9 0.2 0.00061 20.0 0.2 1.6 1 1 0 1 1 1 1 TrkA-N domain DUF1188 PF06690.11 gi|312137034|ref|YP_004004371.1| - 0.0022 17.6 0.2 0.0033 17.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Ldh_1_N PF00056.23 gi|312137034|ref|YP_004004371.1| - 0.028 14.5 0.6 0.052 13.7 0.1 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain KR PF08659.10 gi|312137034|ref|YP_004004371.1| - 0.063 13.2 0.0 0.15 12.0 0.0 1.6 1 1 1 2 2 2 0 KR domain Sacchrp_dh_NADP PF03435.18 gi|312137034|ref|YP_004004371.1| - 0.099 12.9 0.1 0.17 12.1 0.1 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain MTD PF01993.18 gi|312137035|ref|YP_004004372.1| - 2.6e-140 466.5 2.9 2.9e-140 466.3 2.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF364 PF04016.12 gi|312137035|ref|YP_004004372.1| - 0.019 14.6 0.0 0.37 10.4 0.0 2.7 2 1 0 3 3 3 0 Putative heavy-metal chelation Radical_SAM PF04055.21 gi|312137036|ref|YP_004004373.1| - 4.4e-22 79.2 2.6 3.3e-18 66.6 0.0 2.3 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|312137036|ref|YP_004004373.1| - 0.58 10.3 11.7 6.4 6.9 3.6 3.7 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|312137036|ref|YP_004004373.1| - 3.6 7.8 6.2 64 3.8 4.3 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain Peptidase_M42 PF05343.14 gi|312137037|ref|YP_004004374.1| - 1.9e-112 375.1 3.7 2.2e-112 374.9 3.7 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|312137037|ref|YP_004004374.1| - 1e-07 31.9 0.0 1.7e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|312137037|ref|YP_004004374.1| - 0.0018 18.0 0.0 0.58 9.8 0.0 2.4 2 1 0 2 2 2 2 Peptidase family M28 Abi_HHR PF07815.14 gi|312137037|ref|YP_004004374.1| - 0.022 14.9 1.0 2.9 8.1 0.0 2.9 3 0 0 3 3 3 0 Abl-interactor HHR EnY2 PF10163.9 gi|312137037|ref|YP_004004374.1| - 0.11 12.8 0.1 0.56 10.6 0.0 2.1 2 0 0 2 2 2 0 Transcription factor e(y)2 DUF1476 PF07345.11 gi|312137037|ref|YP_004004374.1| - 0.15 12.4 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 ATPase inhibitor subunit zeta Flavoprotein PF02441.19 gi|312137038|ref|YP_004004375.1| - 2.7e-18 66.2 0.0 5.8e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 Flavoprotein CopG_antitoxin PF12441.8 gi|312137038|ref|YP_004004375.1| - 0.034 14.7 0.1 0.26 11.8 0.0 2.2 2 0 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system TPR_1 PF00515.28 gi|312137039|ref|YP_004004376.1| - 7.5e-55 180.7 19.0 4e-13 48.6 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|312137039|ref|YP_004004376.1| - 1.4e-50 165.3 11.1 2.3e-09 36.6 0.0 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|312137039|ref|YP_004004376.1| - 1.3e-42 140.4 15.0 6.8e-10 38.4 0.0 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|312137039|ref|YP_004004376.1| - 9.1e-33 111.7 13.8 8.7e-11 41.3 0.1 6.1 3 2 3 6 6 6 5 TPR repeat TPR_12 PF13424.6 gi|312137039|ref|YP_004004376.1| - 1.7e-31 108.4 5.5 1.2e-10 41.5 0.3 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|312137039|ref|YP_004004376.1| - 7.3e-29 98.0 12.4 3.6e-08 33.2 0.0 6.4 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|312137039|ref|YP_004004376.1| - 1.2e-28 97.0 0.4 0.0001 22.1 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|312137039|ref|YP_004004376.1| - 3.7e-28 97.8 0.1 2.1e-07 31.4 0.0 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|312137039|ref|YP_004004376.1| - 5.4e-25 87.8 0.0 2.6e-07 31.2 0.0 3.4 1 1 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|312137039|ref|YP_004004376.1| - 2e-24 84.2 0.0 0.0051 17.5 0.0 6.1 1 1 5 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|312137039|ref|YP_004004376.1| - 2.2e-20 72.7 5.4 1.9e-08 34.4 0.2 3.3 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|312137039|ref|YP_004004376.1| - 2.1e-19 68.8 0.8 0.018 15.6 0.0 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|312137039|ref|YP_004004376.1| - 2.9e-19 68.3 9.4 0.0078 16.1 0.0 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|312137039|ref|YP_004004376.1| - 1.6e-17 63.4 0.0 1.8e-07 31.2 0.0 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|312137039|ref|YP_004004376.1| - 2.9e-17 62.5 8.5 0.0013 18.8 0.3 6.1 6 0 0 6 6 6 5 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|312137039|ref|YP_004004376.1| - 1.9e-10 41.0 0.8 0.0096 16.0 0.1 5.5 1 1 4 5 5 5 3 Domain of Unknown Function (DUF3856) NRBF2_MIT PF17169.4 gi|312137039|ref|YP_004004376.1| - 1.7e-09 37.8 4.4 0.065 13.5 0.0 5.6 2 1 3 6 6 6 2 MIT domain of nuclear receptor-binding factor 2 MIT PF04212.18 gi|312137039|ref|YP_004004376.1| - 3.5e-09 36.6 12.3 1.4 9.1 0.0 6.1 4 1 2 6 6 6 3 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|312137039|ref|YP_004004376.1| - 9.2e-09 34.7 2.1 0.00018 20.6 0.0 3.6 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|312137039|ref|YP_004004376.1| - 3.5e-08 33.5 2.6 0.12 12.4 0.2 4.6 1 1 3 4 4 4 3 Putative TPR-like repeat DUF5113 PF17140.4 gi|312137039|ref|YP_004004376.1| - 1.1e-07 31.8 2.5 1.9 8.3 0.0 5.2 1 1 4 5 5 5 2 Domain of unknown function (DUF5113) Coatomer_E PF04733.14 gi|312137039|ref|YP_004004376.1| - 3e-07 30.1 0.4 0.0026 17.2 0.0 3.4 1 1 3 4 4 4 1 Coatomer epsilon subunit PPR PF01535.20 gi|312137039|ref|YP_004004376.1| - 5.9e-06 26.2 9.2 3.6 8.1 0.1 6.3 6 0 0 6 6 6 1 PPR repeat TPR_3 PF07720.12 gi|312137039|ref|YP_004004376.1| - 0.00011 22.1 2.3 4.5 7.4 0.0 5.2 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|312137039|ref|YP_004004376.1| - 0.00013 22.3 0.0 12 6.3 0.0 4.2 1 1 2 4 4 4 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|312137039|ref|YP_004004376.1| - 0.00035 20.8 0.0 2.7 8.3 0.0 3.4 1 1 1 3 3 3 1 Tetratrico peptide repeat PknG_TPR PF16918.5 gi|312137039|ref|YP_004004376.1| - 0.00038 19.3 0.0 1.6 7.3 0.0 3.2 3 1 0 3 3 3 2 Protein kinase G tetratricopeptide repeat SPOB_a PF14689.6 gi|312137039|ref|YP_004004376.1| - 0.00039 20.1 0.7 4.7 7.0 0.0 4.0 4 0 0 4 4 4 0 Sensor_kinase_SpoOB-type, alpha-helical domain ANAPC5 PF12862.7 gi|312137039|ref|YP_004004376.1| - 0.00074 19.5 1.4 3.8 7.6 0.1 4.3 4 1 1 5 5 4 1 Anaphase-promoting complex subunit 5 Rapsyn_N PF10579.9 gi|312137039|ref|YP_004004376.1| - 0.00078 19.5 0.0 2.2 8.4 0.0 3.6 3 2 1 4 4 3 1 Rapsyn N-terminal myristoylation and linker region HTH_Bact PF18768.1 gi|312137039|ref|YP_004004376.1| - 0.00096 18.7 4.4 1.9 8.2 0.1 5.1 5 0 0 5 5 5 1 Helix-turn-helix bacterial domain TPR_4 PF07721.14 gi|312137039|ref|YP_004004376.1| - 0.0012 19.2 0.0 28 5.7 0.0 4.5 5 0 0 5 5 4 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|312137039|ref|YP_004004376.1| - 0.0015 19.0 0.0 1.1 9.7 0.0 3.1 1 1 2 3 3 3 1 Alkyl sulfatase dimerisation RPN7 PF10602.9 gi|312137039|ref|YP_004004376.1| - 0.0024 17.6 1.3 35 4.0 0.0 4.9 3 1 3 6 6 6 0 26S proteasome subunit RPN7 MAS20 PF02064.15 gi|312137039|ref|YP_004004376.1| - 0.0033 17.5 0.0 7.9 6.6 0.0 3.8 1 1 3 4 4 4 0 MAS20 protein import receptor BTAD PF03704.17 gi|312137039|ref|YP_004004376.1| - 0.0033 17.9 0.0 11 6.5 0.1 3.7 2 1 0 2 2 2 0 Bacterial transcriptional activator domain ChAPs PF09295.10 gi|312137039|ref|YP_004004376.1| - 0.0036 16.4 0.0 0.0068 15.5 0.0 1.3 1 1 0 1 1 1 1 ChAPs (Chs5p-Arf1p-binding proteins) DUF4919 PF16266.5 gi|312137039|ref|YP_004004376.1| - 0.019 14.9 0.1 7.9 6.4 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4919) DUF5388 PF17363.2 gi|312137039|ref|YP_004004376.1| - 0.022 14.9 0.0 6.6 7.0 0.0 3.0 2 1 0 2 2 2 0 Family of unknown function (DUF5388) DUF3808 PF10300.9 gi|312137039|ref|YP_004004376.1| - 0.025 13.3 0.1 0.37 9.5 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3808) TPR_MalT PF17874.1 gi|312137039|ref|YP_004004376.1| - 0.17 11.2 0.0 2.4 7.5 0.0 2.6 1 1 1 2 2 2 0 MalT-like TPR region SGTA_dimer PF16546.5 gi|312137039|ref|YP_004004376.1| - 0.48 10.2 2.6 64 3.4 0.1 3.7 2 2 2 4 4 4 0 Homodimerisation domain of SGTA SPO22 PF08631.10 gi|312137039|ref|YP_004004376.1| - 1.3 8.4 6.1 79 2.6 0.0 4.3 3 1 1 5 5 5 0 Meiosis protein SPO22/ZIP4 like CMD PF02627.20 gi|312137040|ref|YP_004004377.1| - 3e-12 46.4 0.0 3.4e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Ribosomal_L15e PF00827.17 gi|312137041|ref|YP_004004378.1| - 5.8e-86 287.1 10.9 6.4e-86 287.0 10.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|312137042|ref|YP_004004379.1| - 1.3e-34 119.1 4.5 1.6e-34 118.7 4.5 1.1 1 0 0 1 1 1 1 RNA binding Ig_J_chain PF15097.6 gi|312137042|ref|YP_004004379.1| - 0.044 13.7 0.0 0.065 13.1 0.0 1.3 1 1 0 1 1 1 0 Immunoglobulin J chain RNase_P_p30 PF01876.16 gi|312137043|ref|YP_004004380.1| - 5e-45 153.6 0.0 7.2e-45 153.1 0.0 1.3 1 1 0 1 1 1 1 RNase P subunit p30 NUFIP1 PF10453.9 gi|312137043|ref|YP_004004380.1| - 0.14 12.0 0.1 0.33 10.8 0.1 1.5 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) RNase_P_Rpp14 PF01900.19 gi|312137044|ref|YP_004004381.1| - 4.1e-21 75.1 0.2 5.1e-21 74.8 0.2 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|312137045|ref|YP_004004382.1| - 7.9e-63 211.4 0.1 1e-62 211.0 0.1 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|312137045|ref|YP_004004382.1| - 1.2e-14 53.6 0.5 4.2e-14 51.9 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF5331 PF17265.2 gi|312137045|ref|YP_004004382.1| - 0.018 14.8 0.0 0.046 13.4 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5331) SBDS PF01172.18 gi|312137046|ref|YP_004004383.1| - 5.6e-24 84.0 0.4 1.1e-23 83.1 0.4 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|312137046|ref|YP_004004383.1| - 1.1e-21 77.0 0.2 2e-21 76.2 0.0 1.5 2 0 0 2 2 2 1 SBDS protein C-terminal domain ECR1_N PF14382.6 gi|312137047|ref|YP_004004384.1| - 3.6e-10 39.5 0.0 6e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_6 PF15985.5 gi|312137047|ref|YP_004004384.1| - 1.2e-08 35.1 0.1 2.1e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|312137047|ref|YP_004004384.1| - 7e-07 29.0 0.2 4.4e-06 26.4 0.1 2.3 2 0 0 2 2 2 1 KH domain S1 PF00575.23 gi|312137047|ref|YP_004004384.1| - 9.5e-07 29.1 1.4 2.3e-06 27.8 1.4 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 gi|312137047|ref|YP_004004384.1| - 5.2e-05 23.0 2.3 9.8e-05 22.1 0.4 2.3 1 1 1 2 2 2 1 KH domain KH_4 PF13083.6 gi|312137047|ref|YP_004004384.1| - 0.033 14.1 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 KH domain RNase_PH PF01138.21 gi|312137048|ref|YP_004004385.1| - 4.7e-38 130.7 0.1 1e-37 129.6 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|312137048|ref|YP_004004385.1| - 3.1e-16 59.2 0.5 4.8e-16 58.5 0.5 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 OsmC PF02566.19 gi|312137048|ref|YP_004004385.1| - 0.017 15.6 0.1 0.035 14.6 0.1 1.5 1 0 0 1 1 1 0 OsmC-like protein HTH_psq PF05225.16 gi|312137048|ref|YP_004004385.1| - 0.045 13.5 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain RNase_PH PF01138.21 gi|312137049|ref|YP_004004386.1| - 9.8e-34 116.7 0.0 2.6e-33 115.3 0.0 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|312137049|ref|YP_004004386.1| - 2.5e-15 56.3 0.4 5.6e-15 55.1 0.4 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|312137050|ref|YP_004004387.1| - 2.7e-34 117.1 5.1 2.9e-34 117.0 5.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|312137050|ref|YP_004004387.1| - 1.3e-05 25.0 2.6 2e-05 24.4 2.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|312137050|ref|YP_004004387.1| - 0.0083 16.2 0.6 4.6 7.5 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zf-tcix PF14952.6 gi|312137050|ref|YP_004004387.1| - 0.024 14.3 1.0 0.024 14.3 1.0 1.9 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF4379 PF14311.6 gi|312137050|ref|YP_004004387.1| - 0.031 14.6 1.3 1.6 9.2 0.1 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain C1_1 PF00130.22 gi|312137050|ref|YP_004004387.1| - 0.041 13.8 1.3 0.057 13.3 1.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|312137050|ref|YP_004004387.1| - 0.057 13.0 0.8 0.11 12.0 0.8 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Elf1 PF05129.13 gi|312137050|ref|YP_004004387.1| - 0.071 13.2 2.1 0.13 12.3 2.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 gi|312137050|ref|YP_004004387.1| - 0.072 14.0 1.4 6.4 7.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|312137050|ref|YP_004004387.1| - 0.086 12.3 2.8 5.8 6.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|312137050|ref|YP_004004387.1| - 0.09 12.7 0.1 0.09 12.7 0.1 1.5 2 0 0 2 2 1 0 Halobacterial output domain 2 OrfB_Zn_ribbon PF07282.11 gi|312137050|ref|YP_004004387.1| - 0.12 12.3 2.1 0.25 11.3 2.1 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-BED PF02892.15 gi|312137050|ref|YP_004004387.1| - 0.14 12.2 0.2 0.14 12.2 0.2 2.2 1 1 1 2 2 2 0 BED zinc finger Zn_ribbon_SprT PF17283.2 gi|312137050|ref|YP_004004387.1| - 0.17 11.8 3.6 5.4 7.0 0.2 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|312137050|ref|YP_004004387.1| - 0.37 11.3 2.1 8 7.1 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_3 PF13878.6 gi|312137050|ref|YP_004004387.1| - 0.39 10.6 2.9 4.1 7.3 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2_6 PF13912.6 gi|312137050|ref|YP_004004387.1| - 0.84 9.7 4.7 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|312137051|ref|YP_004004388.1| - 0.00027 20.4 2.8 0.2 11.3 0.2 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|312137051|ref|YP_004004388.1| - 0.00045 20.2 1.2 0.0005 20.0 1.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|312137051|ref|YP_004004388.1| - 0.00054 19.6 1.6 0.00089 18.9 1.6 1.4 1 1 0 1 1 1 1 zinc-ribbon domain HscB_4_cys PF18256.1 gi|312137051|ref|YP_004004388.1| - 0.00063 19.5 0.2 0.00082 19.1 0.2 1.1 1 0 0 1 1 1 1 Co-chaperone HscB tetracysteine metal binding motif zf-FPG_IleRS PF06827.14 gi|312137051|ref|YP_004004388.1| - 0.0013 18.5 4.1 0.0019 18.0 4.1 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|312137051|ref|YP_004004388.1| - 0.0038 17.3 1.4 0.0057 16.7 1.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-HIT PF04438.16 gi|312137051|ref|YP_004004388.1| - 0.0039 17.0 9.4 0.23 11.4 3.3 2.1 2 0 0 2 2 2 2 HIT zinc finger C1_2 PF03107.16 gi|312137051|ref|YP_004004388.1| - 0.0041 17.4 1.5 0.0051 17.1 1.5 1.2 1 0 0 1 1 1 1 C1 domain NOB1_Zn_bind PF08772.11 gi|312137051|ref|YP_004004388.1| - 0.0042 17.2 0.7 0.0043 17.2 0.7 1.1 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|312137051|ref|YP_004004388.1| - 0.0053 16.8 0.6 0.0053 16.8 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|312137051|ref|YP_004004388.1| - 0.0053 16.4 6.7 0.0069 16.0 6.7 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2HC5 PF06221.13 gi|312137051|ref|YP_004004388.1| - 0.0092 15.9 0.4 0.01 15.8 0.4 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.11 gi|312137051|ref|YP_004004388.1| - 0.0094 15.8 1.2 0.011 15.6 1.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|312137051|ref|YP_004004388.1| - 0.012 15.5 4.4 0.24 11.3 5.1 2.0 1 1 1 2 2 2 0 SprT-like zinc ribbon domain NMD3 PF04981.13 gi|312137051|ref|YP_004004388.1| - 0.018 14.5 0.7 0.018 14.5 0.7 1.1 1 0 0 1 1 1 0 NMD3 family zinc-ribbons_6 PF07191.12 gi|312137051|ref|YP_004004388.1| - 0.02 14.9 1.0 0.021 14.8 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons Spt4 PF06093.13 gi|312137051|ref|YP_004004388.1| - 0.024 14.7 0.5 0.024 14.7 0.5 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger RNHCP PF12647.7 gi|312137051|ref|YP_004004388.1| - 0.027 14.4 0.2 0.03 14.3 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain PHD PF00628.29 gi|312137051|ref|YP_004004388.1| - 0.07 13.0 3.4 0.092 12.7 3.4 1.2 1 0 0 1 1 1 0 PHD-finger zinc_ribbon_10 PF10058.9 gi|312137051|ref|YP_004004388.1| - 0.073 12.8 2.7 1.3 8.8 0.3 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF2197 PF09963.9 gi|312137051|ref|YP_004004388.1| - 0.094 13.0 1.3 0.094 13.0 1.3 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zf_C2H2_10 PF18414.1 gi|312137051|ref|YP_004004388.1| - 0.15 11.6 0.8 0.15 11.6 0.8 1.7 2 0 0 2 2 2 0 C2H2 type zinc-finger Rubredoxin PF00301.20 gi|312137051|ref|YP_004004388.1| - 0.18 11.8 3.6 4.3 7.4 0.1 2.1 1 1 1 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|312137051|ref|YP_004004388.1| - 0.34 10.5 4.3 0.86 9.2 4.4 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding Pcc1 PF09341.10 gi|312137053|ref|YP_004004390.1| - 6.7e-10 39.0 0.0 7.8e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|312137054|ref|YP_004004391.1| - 2.5e-27 94.9 19.8 2.8e-27 94.7 19.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.6 gi|312137054|ref|YP_004004391.1| - 0.011 15.0 13.6 0.014 14.7 13.6 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV FlaC_arch PF05377.11 gi|312137054|ref|YP_004004391.1| - 0.054 13.9 3.7 0.054 13.9 3.7 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3287 PF11690.8 gi|312137054|ref|YP_004004391.1| - 0.11 12.3 0.5 0.11 12.3 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) TPR_MLP1_2 PF07926.12 gi|312137054|ref|YP_004004391.1| - 0.14 12.2 20.6 0.48 10.5 20.6 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein IFT57 PF10498.9 gi|312137054|ref|YP_004004391.1| - 0.14 11.1 17.4 0.7 8.8 5.2 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF424 PF04242.13 gi|312137054|ref|YP_004004391.1| - 0.16 12.2 1.9 3.3 8.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF424) Occludin_ELL PF07303.13 gi|312137054|ref|YP_004004391.1| - 0.54 11.0 12.0 0.6 10.9 6.6 2.0 1 1 1 2 2 2 0 Occludin homology domain CdvA PF18822.1 gi|312137054|ref|YP_004004391.1| - 0.57 10.0 17.2 1.1 9.2 8.3 2.2 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Prefoldin PF02996.17 gi|312137054|ref|YP_004004391.1| - 0.65 9.9 15.3 0.61 10.0 3.3 2.4 1 1 1 2 2 2 0 Prefoldin subunit Spore_III_AB PF09548.10 gi|312137054|ref|YP_004004391.1| - 0.86 9.7 12.7 1.6 8.8 12.5 1.6 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DUF87 PF01935.17 gi|312137054|ref|YP_004004391.1| - 1.1 9.3 6.9 1.3 9.1 6.9 1.1 1 0 0 1 1 1 0 Helicase HerA, central domain WXG100 PF06013.12 gi|312137054|ref|YP_004004391.1| - 1.3 9.3 11.0 7.7 6.8 4.9 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Cas_Cas1 PF01867.16 gi|312137054|ref|YP_004004391.1| - 1.3 8.1 9.6 1.9 7.6 9.6 1.4 1 1 0 1 1 1 0 CRISPR associated protein Cas1 CemA PF03040.14 gi|312137054|ref|YP_004004391.1| - 1.8 8.4 9.9 2.5 8.0 9.9 1.3 1 1 0 1 1 1 0 CemA family DUF3450 PF11932.8 gi|312137054|ref|YP_004004391.1| - 1.9 7.7 21.8 0.21 10.9 9.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Prominin PF05478.11 gi|312137054|ref|YP_004004391.1| - 2.2 6.1 7.9 2.8 5.8 7.9 1.1 1 0 0 1 1 1 0 Prominin POTRA_TamA_1 PF17243.2 gi|312137054|ref|YP_004004391.1| - 2.5 8.3 10.1 0.3 11.2 1.1 2.1 2 0 0 2 2 2 0 POTRA domain TamA domain 1 Laminin_II PF06009.12 gi|312137054|ref|YP_004004391.1| - 2.7 8.0 13.3 24 4.9 13.3 2.0 1 1 0 1 1 1 0 Laminin Domain II AAA_11 PF13086.6 gi|312137054|ref|YP_004004391.1| - 3.1 7.5 10.8 3.8 7.2 10.8 1.0 1 0 0 1 1 1 0 AAA domain DHR10 PF18595.1 gi|312137054|ref|YP_004004391.1| - 3.5 7.7 23.7 2.2 8.4 7.1 2.1 1 1 0 2 2 2 0 Designed helical repeat protein 10 domain Het-C PF07217.11 gi|312137054|ref|YP_004004391.1| - 3.7 6.0 7.3 4.1 5.8 7.3 1.0 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C T3SS_needle_E PF08988.10 gi|312137054|ref|YP_004004391.1| - 4 7.7 16.2 8.3 6.6 3.6 3.5 2 2 2 4 4 4 0 Type III secretion system, cytoplasmic E component of needle KfrA_N PF11740.8 gi|312137054|ref|YP_004004391.1| - 4.1 8.1 15.6 2.4 8.9 7.9 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Nup54 PF13874.6 gi|312137054|ref|YP_004004391.1| - 4.7 7.3 15.2 81 3.3 15.2 2.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4407 PF14362.6 gi|312137054|ref|YP_004004391.1| - 5.3 6.3 11.5 7 5.9 11.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4795 PF16043.5 gi|312137054|ref|YP_004004391.1| - 6.3 6.3 18.0 15 5.2 18.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF2121 PF09894.9 gi|312137055|ref|YP_004004392.1| - 7.7e-76 254.0 10.1 1.4e-75 253.2 10.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) Proteasome PF00227.26 gi|312137055|ref|YP_004004392.1| - 0.00062 19.3 0.1 0.15 11.6 0.0 2.7 2 0 0 2 2 2 2 Proteasome subunit Focal_AT PF03623.13 gi|312137055|ref|YP_004004392.1| - 0.056 13.4 1.5 0.1 12.6 1.5 1.4 1 0 0 1 1 1 0 Focal adhesion targeting region DUF424 PF04242.13 gi|312137055|ref|YP_004004392.1| - 0.15 12.3 1.5 1.5 9.1 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF424) Sen15 PF09631.10 gi|312137055|ref|YP_004004392.1| - 1.7 9.0 4.2 23 5.4 0.2 2.6 2 1 1 3 3 3 0 Sen15 protein Lactamase_B_2 PF12706.7 gi|312137056|ref|YP_004004393.1| - 1.8e-23 83.1 0.1 2.3e-23 82.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|312137056|ref|YP_004004393.1| - 1.7e-13 50.8 0.1 2.3e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|312137056|ref|YP_004004393.1| - 4.6e-06 26.8 1.0 3.1e-05 24.1 1.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Chorismate_synt PF01264.21 gi|312137057|ref|YP_004004394.1| - 1.9e-142 473.8 0.7 2.1e-142 473.7 0.7 1.0 1 0 0 1 1 1 1 Chorismate synthase TP_methylase PF00590.20 gi|312137058|ref|YP_004004395.1| - 7.3e-53 179.7 0.1 8.4e-53 179.5 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|312137058|ref|YP_004004395.1| - 0.00053 20.4 0.3 0.0013 19.1 0.3 1.6 1 1 0 1 1 1 1 Radical SAM superfamily UPF0180 PF03698.13 gi|312137058|ref|YP_004004395.1| - 0.13 12.4 0.9 0.32 11.2 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DUF131 PF01998.17 gi|312137059|ref|YP_004004396.1| - 3.6e-22 77.8 6.4 3.6e-22 77.8 6.4 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF973 PF06157.11 gi|312137059|ref|YP_004004396.1| - 0.012 14.7 12.1 0.014 14.5 12.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Pox_A14 PF05767.12 gi|312137059|ref|YP_004004396.1| - 0.67 10.1 9.2 0.75 10.0 0.6 2.2 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF2976 PF11190.8 gi|312137059|ref|YP_004004396.1| - 1.8 8.4 11.4 0.041 13.7 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) Saf_2TM PF18303.1 gi|312137059|ref|YP_004004396.1| - 2.4 7.7 8.1 0.23 11.0 0.4 2.0 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain Phage_holin_2_4 PF16082.5 gi|312137059|ref|YP_004004396.1| - 4.4 7.1 6.8 9.2 6.1 0.2 2.2 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like LapA_dom PF06305.11 gi|312137059|ref|YP_004004396.1| - 7.8 6.4 9.4 14 5.6 0.9 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2207 PF09972.9 gi|312137059|ref|YP_004004396.1| - 8.3 5.0 7.4 11 4.7 7.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MCR_C PF04609.12 gi|312137060|ref|YP_004004397.1| - 6.3e-11 41.9 0.2 9.7e-11 41.2 0.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF3410 PF11890.8 gi|312137060|ref|YP_004004397.1| - 0.026 14.3 0.0 0.7 9.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3410) Zn_dep_PLPC PF00882.18 gi|312137061|ref|YP_004004398.1| - 5.6e-18 65.6 0.6 7.1e-18 65.2 0.6 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C SBP_bac_11 PF13531.6 gi|312137062|ref|YP_004004399.1| - 9e-54 182.6 0.0 1e-53 182.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|312137062|ref|YP_004004399.1| - 1.1e-09 38.7 2.5 2.9e-08 34.0 2.5 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|312137062|ref|YP_004004399.1| - 1.4e-08 34.6 0.0 1.8e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.6 gi|312137062|ref|YP_004004399.1| - 6.4e-08 32.8 4.9 0.00023 21.1 0.0 2.2 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|312137062|ref|YP_004004399.1| - 2.9e-05 23.3 0.1 6.3e-05 22.2 0.1 1.5 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.6 gi|312137062|ref|YP_004004399.1| - 0.0035 16.8 0.5 0.49 9.8 0.1 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein ABC2_membrane_3 PF12698.7 gi|312137062|ref|YP_004004399.1| - 0.013 14.6 0.1 0.04 13.0 0.1 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein Rubis-subs-bind PF09273.11 gi|312137062|ref|YP_004004399.1| - 0.047 14.4 0.0 0.075 13.7 0.0 1.2 1 0 0 1 1 1 0 Rubisco LSMT substrate-binding Cas_Csa5 PF09702.10 gi|312137062|ref|YP_004004399.1| - 0.08 13.2 0.5 14 6.0 0.0 2.4 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Csa5) HEM4 PF02602.15 gi|312137062|ref|YP_004004399.1| - 0.11 11.9 0.1 0.56 9.5 0.0 2.0 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD ART PF01129.18 gi|312137062|ref|YP_004004399.1| - 0.18 11.0 0.0 0.51 9.6 0.0 1.6 2 0 0 2 2 2 0 NAD:arginine ADP-ribosyltransferase BPD_transp_1 PF00528.22 gi|312137063|ref|YP_004004400.1| - 2.9e-19 69.5 12.5 2.9e-19 69.5 12.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Radical_SAM PF04055.21 gi|312137064|ref|YP_004004401.1| - 1e-23 84.6 0.0 7.3e-23 81.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137064|ref|YP_004004401.1| - 1.2e-13 51.5 0.1 5e-13 49.5 0.1 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137064|ref|YP_004004401.1| - 5.2e-11 42.7 0.2 1.4e-10 41.3 0.0 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain CobN-Mg_chel PF02514.16 gi|312137065|ref|YP_004004402.1| - 1.9e-282 939.8 0.0 2.4e-282 939.5 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase TetR PF13972.6 gi|312137065|ref|YP_004004402.1| - 0.18 11.5 0.0 0.51 10.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial transcriptional repressor Epimerase_2 PF02350.19 gi|312137066|ref|YP_004004403.1| - 8.1e-07 28.2 0.2 9e-06 24.8 0.2 2.1 1 1 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase O_anti_polymase PF01901.16 gi|312137067|ref|YP_004004404.1| - 1.1e-84 284.6 36.3 1.4e-84 284.3 36.3 1.0 1 0 0 1 1 1 1 Putative O-antigen polymerase O-ag_pol_Wzy PF14296.6 gi|312137067|ref|YP_004004404.1| - 1.3e-05 24.0 38.3 7.8e-05 21.5 1.6 2.3 2 0 0 2 2 2 2 O-antigen polysaccharide polymerase Wzy 2-Hacid_dh_C PF02826.19 gi|312137068|ref|YP_004004405.1| - 1.3e-70 236.4 0.0 2e-70 235.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|312137068|ref|YP_004004405.1| - 7.9e-41 138.9 2.8 8.5e-40 135.5 0.5 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|312137068|ref|YP_004004405.1| - 2e-12 46.6 0.8 3.1e-11 42.8 0.0 3.0 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.15 gi|312137068|ref|YP_004004405.1| - 5e-06 26.8 0.7 1.6e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|312137068|ref|YP_004004405.1| - 6.9e-05 22.5 0.5 0.00095 18.8 0.0 2.6 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|312137068|ref|YP_004004405.1| - 0.0075 16.7 0.0 0.036 14.5 0.0 2.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|312137068|ref|YP_004004405.1| - 0.028 15.0 1.0 0.15 12.7 0.0 2.8 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent GATase_3 PF07685.14 gi|312137069|ref|YP_004004406.1| - 1.2e-38 132.7 0.3 1.8e-38 132.1 0.3 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|312137069|ref|YP_004004406.1| - 2.1e-17 63.4 0.1 7.2e-17 61.6 0.1 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|312137069|ref|YP_004004406.1| - 3.5e-13 49.8 1.1 7.7e-07 29.1 0.1 2.3 2 0 0 2 2 2 2 AAA domain DJ-1_PfpI PF01965.24 gi|312137069|ref|YP_004004406.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family SNO PF01174.19 gi|312137069|ref|YP_004004406.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Radical_SAM PF04055.21 gi|312137070|ref|YP_004004407.1| - 9.7e-19 68.4 0.8 3.9e-17 63.1 0.1 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137070|ref|YP_004004407.1| - 1.6e-14 54.4 0.2 5.3e-14 52.7 0.2 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137070|ref|YP_004004407.1| - 1.6e-11 44.4 0.4 4.4e-11 42.9 0.4 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|312137070|ref|YP_004004407.1| - 1.7e-06 27.6 3.5 1.7e-06 27.6 3.5 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer2_4 PF13510.6 gi|312137070|ref|YP_004004407.1| - 7.5e-06 25.9 0.2 1.8e-05 24.7 0.2 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 gi|312137070|ref|YP_004004407.1| - 1.9e-05 25.2 17.5 0.001 19.6 5.2 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137070|ref|YP_004004407.1| - 2.4e-05 24.2 2.5 2.4e-05 24.2 2.5 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|312137070|ref|YP_004004407.1| - 3.9e-05 23.5 10.7 0.0006 19.7 1.4 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137070|ref|YP_004004407.1| - 5.5e-05 23.2 27.4 0.00047 20.2 13.0 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312137070|ref|YP_004004407.1| - 7.8e-05 22.7 0.9 7.8e-05 22.7 0.9 3.7 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312137070|ref|YP_004004407.1| - 0.00052 20.2 6.4 0.0019 18.3 6.4 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137070|ref|YP_004004407.1| - 0.001 19.4 0.8 0.001 19.4 0.8 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312137070|ref|YP_004004407.1| - 0.0013 18.9 12.7 0.0013 18.9 12.7 3.5 2 2 1 3 3 2 1 4Fe-4S dicluster domain UBA_4 PF14555.6 gi|312137070|ref|YP_004004407.1| - 0.0026 17.6 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain Fer4_8 PF13183.6 gi|312137070|ref|YP_004004407.1| - 0.011 16.2 17.2 0.042 14.3 2.1 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312137070|ref|YP_004004407.1| - 0.022 15.3 14.0 0.057 14.0 1.1 3.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer2_3 PF13085.6 gi|312137070|ref|YP_004004407.1| - 0.05 13.6 0.2 0.12 12.4 0.2 1.8 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|312137070|ref|YP_004004407.1| - 0.077 13.6 0.8 0.077 13.6 0.8 3.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain RNaseH_like PF04308.12 gi|312137070|ref|YP_004004407.1| - 0.081 12.8 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease H-like Anti-TRAP PF15777.5 gi|312137070|ref|YP_004004407.1| - 0.11 12.5 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Fer4_15 PF13459.6 gi|312137070|ref|YP_004004407.1| - 2 9.2 9.1 0.28 12.0 0.5 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|312137070|ref|YP_004004407.1| - 2.3 9.2 22.9 0.072 14.0 5.1 3.2 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|312137070|ref|YP_004004407.1| - 6.1 7.7 17.9 0.24 12.3 1.9 3.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain PolC_DP2 PF03833.13 gi|312137071|ref|YP_004004408.1| - 0 1229.6 3.6 0 1226.4 3.6 2.2 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|312137071|ref|YP_004004408.1| - 3.4e-13 49.7 5.3 3.4e-13 49.7 5.3 2.3 3 0 0 3 3 3 1 Intein splicing domain Yqai PF09466.10 gi|312137071|ref|YP_004004408.1| - 0.058 13.7 0.1 0.4 11.0 0.1 2.5 1 0 0 1 1 1 0 Hypothetical protein Yqai zinc-ribbons_6 PF07191.12 gi|312137071|ref|YP_004004408.1| - 0.064 13.2 2.1 11 6.1 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbons Iron_traffic PF04362.14 gi|312137071|ref|YP_004004408.1| - 0.094 12.4 0.0 0.74 9.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial Fe(2+) trafficking AAA_26 PF13500.6 gi|312137071|ref|YP_004004408.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Nop10p PF04135.12 gi|312137071|ref|YP_004004408.1| - 0.1 12.6 2.7 1.3 9.2 0.8 2.8 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family PT-HINT PF07591.11 gi|312137071|ref|YP_004004408.1| - 0.11 12.8 0.8 2.5 8.4 0.1 2.9 2 0 0 2 2 2 0 Pretoxin HINT domain Type2_restr_D3 PF16902.5 gi|312137071|ref|YP_004004408.1| - 6.9 6.7 6.7 1.1 9.3 1.3 2.6 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain CobN-Mg_chel PF02514.16 gi|312137072|ref|YP_004004409.1| - 3.9e-277 922.3 0.0 2.1e-214 714.6 0.0 2.1 1 1 0 2 2 2 2 CobN/Magnesium Chelatase FliD_C PF07195.12 gi|312137072|ref|YP_004004409.1| - 0.0034 16.8 0.3 0.0088 15.5 0.3 1.7 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus NRN1 PF15056.6 gi|312137072|ref|YP_004004409.1| - 0.22 11.7 1.5 0.82 9.8 0.5 2.4 2 0 0 2 2 2 0 Neuritin protein family NES_C_h PF18208.1 gi|312137072|ref|YP_004004409.1| - 0.96 9.8 4.5 3.1 8.1 4.5 1.9 1 0 0 1 1 1 0 Nicking enzyme C-terminal middle helical domain Phage_holin_6_1 PF09682.10 gi|312137072|ref|YP_004004409.1| - 9 6.8 9.5 7.2 7.1 1.9 3.8 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) MotA_ExbB PF01618.16 gi|312137073|ref|YP_004004410.1| - 1.3e-07 31.4 0.0 1.3e-07 31.4 0.0 1.6 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family Sigma70_r4 PF04545.16 gi|312137073|ref|YP_004004410.1| - 0.053 13.1 0.7 6.6 6.3 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Methyltrn_RNA_3 PF02598.17 gi|312137074|ref|YP_004004411.1| - 1.6e-60 205.1 0.0 2e-60 204.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.6 gi|312137074|ref|YP_004004411.1| - 1.5e-05 24.4 0.2 0.0012 18.2 0.0 2.4 2 1 0 2 2 2 2 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 gi|312137074|ref|YP_004004411.1| - 0.0074 16.5 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|312137075|ref|YP_004004412.1| - 7.3e-97 324.6 0.5 1.4e-96 323.7 0.5 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|312137076|ref|YP_004004413.1| - 1.9e-49 167.9 0.3 2.2e-49 167.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|312137076|ref|YP_004004413.1| - 0.096 13.0 0.2 0.18 12.1 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L23 PF00276.20 gi|312137077|ref|YP_004004414.1| - 1.2e-17 64.1 4.7 3.8e-17 62.4 4.7 1.6 1 1 0 1 1 1 1 Ribosomal protein L23 Chromo_shadow PF01393.19 gi|312137077|ref|YP_004004414.1| - 0.064 13.4 0.2 6.8 6.9 0.0 2.1 2 0 0 2 2 2 0 Chromo shadow domain ResIII PF04851.15 gi|312137077|ref|YP_004004414.1| - 0.067 13.2 0.3 0.077 13.0 0.3 1.1 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Ribosomal_L2_C PF03947.18 gi|312137078|ref|YP_004004415.1| - 3.5e-46 156.5 3.4 5.8e-46 155.8 3.4 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|312137078|ref|YP_004004415.1| - 1.4e-22 79.4 0.2 4.6e-22 77.8 0.2 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|312137079|ref|YP_004004416.1| - 1.4e-36 124.2 0.9 2e-36 123.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Myb_DNA-bind_7 PF15963.5 gi|312137079|ref|YP_004004416.1| - 0.15 12.0 2.0 0.27 11.1 1.7 1.6 1 1 0 1 1 1 0 Myb DNA-binding like DUF5315 PF17242.2 gi|312137079|ref|YP_004004416.1| - 0.18 11.6 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Disordered region of unknown function (DUF5315) DMA PF03474.14 gi|312137079|ref|YP_004004416.1| - 0.27 10.9 1.7 2.4 7.8 0.2 2.2 1 1 1 2 2 2 0 DMRTA motif Ribosomal_L22 PF00237.19 gi|312137080|ref|YP_004004417.1| - 1.9e-32 111.5 0.1 2.4e-32 111.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF98 PF01947.16 gi|312137080|ref|YP_004004417.1| - 0.0079 16.2 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase Ribosomal_S3_C PF00189.20 gi|312137081|ref|YP_004004418.1| - 1.2e-23 83.4 1.4 2.4e-23 82.4 1.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|312137081|ref|YP_004004418.1| - 1.2e-16 60.3 0.2 3.2e-16 58.9 0.0 1.8 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|312137081|ref|YP_004004418.1| - 0.083 12.8 0.5 0.23 11.4 0.1 1.9 2 0 0 2 2 2 0 KH domain KH_1 PF00013.29 gi|312137081|ref|YP_004004418.1| - 0.088 12.7 1.4 0.41 10.5 0.1 2.5 3 0 0 3 3 3 0 KH domain Ribosomal_L29 PF00831.23 gi|312137082|ref|YP_004004419.1| - 6.3e-21 74.1 2.0 7e-21 74.0 2.0 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MADF_DNA_bdg PF10545.9 gi|312137082|ref|YP_004004419.1| - 0.033 14.5 0.2 0.045 14.1 0.2 1.3 1 1 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like DUF4355 PF14265.6 gi|312137082|ref|YP_004004419.1| - 0.043 14.1 2.8 0.056 13.7 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) His_Phos_1 PF00300.22 gi|312137082|ref|YP_004004419.1| - 0.045 13.5 0.1 0.045 13.5 0.1 1.0 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) E2_bind PF08825.10 gi|312137082|ref|YP_004004419.1| - 0.053 13.7 0.1 0.071 13.3 0.1 1.2 1 0 0 1 1 1 0 E2 binding domain DUF1192 PF06698.11 gi|312137082|ref|YP_004004419.1| - 0.72 9.9 12.2 0.1 12.7 5.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) SUI1 PF01253.22 gi|312137083|ref|YP_004004420.1| - 6.8e-23 81.0 3.4 8.8e-23 80.6 3.4 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|312137083|ref|YP_004004420.1| - 3.7e-06 27.2 0.7 4.8e-06 26.8 0.7 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|312137083|ref|YP_004004420.1| - 0.0012 18.6 2.6 0.0012 18.6 2.0 1.3 1 1 0 1 1 1 1 DTW domain UPF0086 PF01868.16 gi|312137084|ref|YP_004004421.1| - 2.6e-23 81.7 0.3 2.9e-23 81.6 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.19 gi|312137084|ref|YP_004004421.1| - 0.014 15.2 0.8 0.063 13.1 0.6 2.0 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Ribosomal_S17 PF00366.20 gi|312137085|ref|YP_004004422.1| - 1.3e-28 98.9 1.9 1.9e-28 98.4 1.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|312137085|ref|YP_004004422.1| - 0.0035 17.7 0.1 0.0075 16.6 0.1 1.6 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|312137086|ref|YP_004004423.1| - 9.1e-37 125.9 0.3 1e-36 125.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|312137087|ref|YP_004004424.1| - 7.3e-32 109.7 2.6 8.5e-32 109.5 2.6 1.0 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|312137087|ref|YP_004004424.1| - 4e-09 36.1 4.3 7.5e-09 35.2 4.3 1.5 1 0 0 1 1 1 1 KOW motif CHAP PF05257.16 gi|312137087|ref|YP_004004424.1| - 0.18 12.4 0.0 0.23 12.0 0.0 1.2 1 0 0 1 1 1 0 CHAP domain Ribosomal_S4e PF00900.20 gi|312137088|ref|YP_004004425.1| - 1.1e-26 92.6 1.7 1.1e-26 92.6 1.7 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|312137088|ref|YP_004004425.1| - 2.1e-17 62.9 8.9 2.1e-17 62.9 8.9 1.7 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.25 gi|312137088|ref|YP_004004425.1| - 8.9e-11 41.3 0.0 3.3e-10 39.5 0.0 2.1 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|312137088|ref|YP_004004425.1| - 0.0016 18.3 0.2 0.0041 17.0 0.0 1.8 2 0 0 2 2 2 1 KOW motif Pox_A8 PF04745.12 gi|312137088|ref|YP_004004425.1| - 0.042 12.9 0.2 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 VITF-3 subunit protein 40S_S4_C PF16121.5 gi|312137088|ref|YP_004004425.1| - 0.094 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 40S ribosomal protein S4 C-terminus Ribosomal_S28e PF01200.18 gi|312137088|ref|YP_004004425.1| - 0.27 11.3 2.3 1.8 8.6 0.1 2.9 2 1 1 3 3 3 0 Ribosomal protein S28e Ribosomal_L5_C PF00673.21 gi|312137089|ref|YP_004004426.1| - 8.4e-25 86.8 0.1 1.5e-24 86.0 0.1 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|312137089|ref|YP_004004426.1| - 8.5e-19 67.6 0.0 2.2e-18 66.3 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|312137090|ref|YP_004004427.1| - 5.7e-14 51.6 3.3 6.2e-14 51.5 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF1451 PF07295.11 gi|312137090|ref|YP_004004427.1| - 0.063 13.3 0.5 0.074 13.1 0.5 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_S8 PF00410.19 gi|312137091|ref|YP_004004428.1| - 1.8e-29 102.3 0.0 2.1e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|312137092|ref|YP_004004429.1| - 4e-29 101.1 12.9 9.7e-18 64.6 2.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|312137092|ref|YP_004004429.1| - 0.043 14.0 5.9 2.1 8.5 0.1 3.1 3 1 1 4 4 4 0 Hsp20/alpha crystallin family CooT PF10133.9 gi|312137092|ref|YP_004004429.1| - 0.11 12.8 2.9 29 5.1 0.1 3.6 2 1 1 3 3 3 0 CO dehydrogenase accessory protein CooT Ribosomal_L32e PF01655.18 gi|312137093|ref|YP_004004430.1| - 1.4e-44 150.9 1.3 1.6e-44 150.8 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|312137094|ref|YP_004004431.1| - 6.8e-58 194.8 17.4 7.5e-58 194.7 17.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e GntR PF00392.21 gi|312137094|ref|YP_004004431.1| - 0.049 13.3 0.5 0.25 11.0 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Ribosomal_L5e PF17144.4 gi|312137095|ref|YP_004004432.1| - 9.3e-38 129.8 1.3 2.1e-24 86.3 0.2 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|312137095|ref|YP_004004432.1| - 1.2e-09 38.6 0.1 1.6e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|312137095|ref|YP_004004432.1| - 4.5e-07 30.7 0.0 8.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.20 gi|312137096|ref|YP_004004433.1| - 1.9e-25 88.6 3.2 1.9e-25 88.6 3.2 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|312137096|ref|YP_004004433.1| - 1.9e-23 81.7 0.1 3.1e-23 81.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Qn_am_d_aIII PF09099.10 gi|312137096|ref|YP_004004433.1| - 0.079 13.4 0.7 0.18 12.2 0.7 1.5 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Ribosomal_L30 PF00327.20 gi|312137097|ref|YP_004004434.1| - 1.8e-15 56.5 0.0 3e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|312137098|ref|YP_004004435.1| - 9.9e-22 78.0 0.5 1.3e-21 77.6 0.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|312137099|ref|YP_004004436.1| - 1.7e-67 227.9 13.6 2.1e-67 227.6 13.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|312137099|ref|YP_004004436.1| - 1e-10 41.2 2.7 1.5e-10 40.7 1.1 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p RseC_MucC PF04246.12 gi|312137099|ref|YP_004004436.1| - 1.1 9.2 0.0 1.1 9.2 0.0 3.2 4 0 0 4 4 4 0 Positive regulator of sigma(E), RseC/MucC AAA_17 PF13207.6 gi|312137100|ref|YP_004004437.1| - 6.4e-42 143.2 0.1 8.6e-42 142.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|312137100|ref|YP_004004437.1| - 8.8e-13 48.9 0.3 2.1e-12 47.7 0.2 1.7 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|312137100|ref|YP_004004437.1| - 3.6e-06 27.3 0.1 1.5e-05 25.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|312137100|ref|YP_004004437.1| - 4.2e-05 23.7 0.1 0.0001 22.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|312137100|ref|YP_004004437.1| - 0.0011 18.5 0.9 0.0016 17.9 0.7 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|312137100|ref|YP_004004437.1| - 0.0012 18.1 0.1 0.0019 17.4 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain Viral_helicase1 PF01443.18 gi|312137100|ref|YP_004004437.1| - 0.0016 18.2 0.0 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Pyr_redox PF00070.27 gi|312137100|ref|YP_004004437.1| - 0.0016 18.9 0.7 0.058 13.9 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase dNK PF01712.19 gi|312137100|ref|YP_004004437.1| - 0.002 18.0 2.4 0.049 13.5 0.3 2.1 1 1 0 2 2 2 1 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|312137100|ref|YP_004004437.1| - 0.0052 16.7 0.1 0.0052 16.7 0.1 2.1 2 1 0 2 2 2 1 NTPase cobW PF02492.19 gi|312137100|ref|YP_004004437.1| - 0.0089 15.6 0.4 0.016 14.8 0.4 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|312137100|ref|YP_004004437.1| - 0.014 15.8 0.2 0.13 12.7 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|312137100|ref|YP_004004437.1| - 0.017 14.4 0.1 0.026 13.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|312137100|ref|YP_004004437.1| - 0.056 13.7 1.1 0.35 11.1 1.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|312137100|ref|YP_004004437.1| - 0.056 13.5 0.6 0.12 12.4 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|312137100|ref|YP_004004437.1| - 0.07 13.5 1.2 0.11 12.9 1.2 1.8 1 1 0 1 1 1 0 AAA domain ADK PF00406.22 gi|312137100|ref|YP_004004437.1| - 0.096 12.8 0.4 0.32 11.1 0.3 2.0 1 1 0 1 1 1 0 Adenylate kinase AAA_16 PF13191.6 gi|312137100|ref|YP_004004437.1| - 0.1 13.0 0.0 0.16 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|312137100|ref|YP_004004437.1| - 0.12 12.9 0.5 0.16 12.5 0.5 1.4 1 1 0 1 1 1 0 ABC transporter Sulfotransfer_4 PF17784.1 gi|312137100|ref|YP_004004437.1| - 0.16 11.8 0.0 0.35 10.6 0.0 1.5 2 0 0 2 2 2 0 Sulfotransferase domain RE_XamI PF09572.10 gi|312137100|ref|YP_004004437.1| - 0.21 11.3 2.3 5.4 6.6 0.1 2.1 2 0 0 2 2 2 0 XamI restriction endonuclease ATP_bind_2 PF03668.15 gi|312137100|ref|YP_004004437.1| - 0.31 10.3 2.6 11 5.2 2.6 2.4 1 1 0 1 1 1 0 P-loop ATPase protein family EMC3_TMCO1 PF01956.16 gi|312137101|ref|YP_004004438.1| - 1.8e-32 112.4 3.2 2.2e-32 112.2 3.2 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|312137101|ref|YP_004004438.1| - 3.6e-05 23.7 1.8 4.6e-05 23.4 1.8 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein FliJ PF02050.16 gi|312137101|ref|YP_004004438.1| - 0.0045 17.2 0.6 0.0059 16.8 0.6 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein DUF4423 PF14394.6 gi|312137101|ref|YP_004004438.1| - 0.042 13.6 3.1 0.27 10.9 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DUF2207 PF09972.9 gi|312137101|ref|YP_004004438.1| - 0.091 11.5 1.3 0.17 10.6 1.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4199 PF13858.6 gi|312137101|ref|YP_004004438.1| - 0.35 11.3 5.3 0.13 12.6 2.5 1.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) SLATT_5 PF18160.1 gi|312137101|ref|YP_004004438.1| - 0.71 9.2 4.7 0.23 10.8 1.5 1.9 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 ETRAMP PF09716.10 gi|312137101|ref|YP_004004438.1| - 4.3 7.5 6.9 0.9 9.7 1.8 2.2 2 1 1 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) Ribosomal_L34e PF01199.18 gi|312137102|ref|YP_004004439.1| - 8.1e-27 93.4 7.8 9.5e-27 93.2 7.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e C1_1 PF00130.22 gi|312137102|ref|YP_004004439.1| - 0.0099 15.7 0.1 0.05 13.5 0.1 1.9 1 1 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-FCS PF06467.14 gi|312137102|ref|YP_004004439.1| - 0.02 14.9 0.1 0.15 12.1 0.1 2.1 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif NinF PF05810.12 gi|312137102|ref|YP_004004439.1| - 0.061 13.2 0.1 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 NinF protein PHD PF00628.29 gi|312137102|ref|YP_004004439.1| - 0.095 12.6 1.2 0.62 10.0 1.2 2.0 1 1 0 1 1 1 0 PHD-finger DUF2197 PF09963.9 gi|312137102|ref|YP_004004439.1| - 0.1 12.9 1.2 0.1 12.9 1.2 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Cytidylate_kin2 PF13189.6 gi|312137103|ref|YP_004004440.1| - 1.4e-26 93.7 1.1 1.7e-25 90.2 1.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|312137103|ref|YP_004004440.1| - 6.1e-20 72.1 0.3 8.4e-20 71.6 0.3 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|312137103|ref|YP_004004440.1| - 1.7e-17 63.9 3.1 1.5e-10 41.2 0.5 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|312137103|ref|YP_004004440.1| - 2.8e-13 50.5 0.4 4.7e-13 49.7 0.4 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|312137103|ref|YP_004004440.1| - 1.2e-05 25.5 2.6 5.1e-05 23.4 2.6 1.9 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|312137103|ref|YP_004004440.1| - 1.9e-05 24.9 0.3 0.0017 18.5 0.3 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|312137103|ref|YP_004004440.1| - 3.2e-05 24.1 0.2 0.00012 22.3 0.0 1.9 1 1 1 2 2 2 1 Adenylate kinase dNK PF01712.19 gi|312137103|ref|YP_004004440.1| - 3.5e-05 23.8 1.5 0.013 15.4 0.2 2.5 1 1 1 2 2 2 2 Deoxynucleoside kinase SRP54 PF00448.22 gi|312137103|ref|YP_004004440.1| - 0.0024 17.5 0.1 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PRK PF00485.18 gi|312137103|ref|YP_004004440.1| - 0.0074 16.0 0.7 0.16 11.7 0.2 2.1 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|312137103|ref|YP_004004440.1| - 0.02 15.1 0.0 0.033 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|312137103|ref|YP_004004440.1| - 0.027 14.3 0.1 0.63 9.9 0.1 2.1 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA PF00004.29 gi|312137103|ref|YP_004004440.1| - 0.031 14.7 0.1 0.054 13.9 0.1 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1128 PF06569.11 gi|312137103|ref|YP_004004440.1| - 0.036 14.0 1.0 0.13 12.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) APS_kinase PF01583.20 gi|312137103|ref|YP_004004440.1| - 0.048 13.6 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase Sulfotransfer_3 PF13469.6 gi|312137103|ref|YP_004004440.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.3 1 1 0 1 1 1 0 Sulfotransferase family Thymidylate_kin PF02223.17 gi|312137103|ref|YP_004004440.1| - 1.3 8.7 5.3 9.5 5.9 0.1 2.8 1 1 2 3 3 3 0 Thymidylate kinase KOW PF00467.29 gi|312137104|ref|YP_004004441.1| - 0.031 14.2 0.9 0.055 13.4 0.9 1.4 1 0 0 1 1 1 0 KOW motif MtrG PF04210.13 gi|312137104|ref|YP_004004441.1| - 0.032 14.1 0.7 0.032 14.1 0.7 1.8 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G TruB_N PF01509.18 gi|312137105|ref|YP_004004442.1| - 1.9e-29 102.9 1.8 7.9e-26 91.2 1.8 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|312137105|ref|YP_004004442.1| - 9.5e-25 86.5 0.1 1.7e-24 85.7 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|312137105|ref|YP_004004442.1| - 1.3e-21 76.3 0.3 7e-21 74.0 0.6 2.1 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|312137105|ref|YP_004004442.1| - 5.7e-20 71.1 0.2 1.7e-19 69.6 0.0 1.9 2 0 0 2 2 2 1 DKCLD (NUC011) domain RNA_pol_Rpb5_C PF01191.19 gi|312137105|ref|YP_004004442.1| - 0.028 14.3 1.1 5.8 6.9 0.0 2.5 2 1 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain Ribosomal_S13 PF00416.22 gi|312137106|ref|YP_004004443.1| - 7e-42 142.9 0.6 8.1e-42 142.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|312137107|ref|YP_004004444.1| - 2.6e-15 55.9 0.2 2.6e-15 55.9 0.2 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|312137107|ref|YP_004004444.1| - 6e-05 23.9 4.4 0.00012 23.0 3.6 2.0 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain RQC PF09382.10 gi|312137107|ref|YP_004004444.1| - 0.013 15.2 0.1 0.054 13.3 0.1 1.9 1 1 1 2 2 2 0 RQC domain EF-hand_14 PF17959.1 gi|312137107|ref|YP_004004444.1| - 0.059 13.7 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 EF-hand domain Ribosomal_S11 PF00411.19 gi|312137108|ref|YP_004004445.1| - 4.1e-45 152.7 2.8 5.5e-45 152.3 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|312137109|ref|YP_004004446.1| - 3e-34 117.8 0.6 3e-33 114.5 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|312137109|ref|YP_004004446.1| - 3.1e-19 68.2 0.0 4.2e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L_2 PF13656.6 gi|312137109|ref|YP_004004446.1| - 3.1e-06 26.8 0.2 0.003 17.3 0.0 3.2 3 0 0 3 3 3 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|312137109|ref|YP_004004446.1| - 3.7e-06 26.5 14.1 0.00069 19.3 4.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312137109|ref|YP_004004446.1| - 4.9e-06 26.6 10.7 4.9e-06 26.6 10.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312137109|ref|YP_004004446.1| - 0.0003 20.8 13.8 0.0003 20.8 13.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312137109|ref|YP_004004446.1| - 0.028 15.3 3.4 0.028 15.3 3.4 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|312137109|ref|YP_004004446.1| - 0.034 14.7 14.2 0.034 14.7 14.2 2.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312137109|ref|YP_004004446.1| - 0.039 14.0 2.4 0.039 14.0 2.4 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|312137109|ref|YP_004004446.1| - 0.076 13.6 1.5 0.076 13.6 1.5 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137109|ref|YP_004004446.1| - 0.28 11.6 17.6 0.74 10.3 1.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137109|ref|YP_004004446.1| - 6.1 7.1 28.5 0.14 12.3 2.9 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Ribosomal_L18 PF17135.4 gi|312137110|ref|YP_004004447.1| - 1.6e-15 57.0 0.2 2e-15 56.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|312137110|ref|YP_004004447.1| - 8.7e-11 42.6 1.0 1.2e-10 42.2 1.0 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|312137111|ref|YP_004004448.1| - 9.4e-10 38.8 0.0 7.5e-07 29.4 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|312137112|ref|YP_004004449.1| - 5.6e-35 120.5 1.1 6.3e-35 120.3 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|312137113|ref|YP_004004450.1| - 1.7e-28 98.7 1.5 1.8e-28 98.6 1.5 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|312137113|ref|YP_004004450.1| - 0.0007 19.8 0.4 0.00088 19.5 0.4 1.1 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.22 gi|312137114|ref|YP_004004451.1| - 7.3e-12 45.0 0.0 8.5e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|312137115|ref|YP_004004452.1| - 1e-76 258.0 0.1 1.4e-76 257.6 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|312137115|ref|YP_004004452.1| - 1.4e-38 132.1 0.1 8e-38 129.6 0.1 2.3 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|312137115|ref|YP_004004452.1| - 1e-08 35.0 0.0 1.6e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like Ribosomal_S2 PF00318.20 gi|312137116|ref|YP_004004453.1| - 1.4e-25 89.8 0.0 8.1e-12 44.8 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|312137117|ref|YP_004004454.1| - 2.4e-94 315.5 0.0 2.8e-94 315.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein ETF PF01012.21 gi|312137117|ref|YP_004004454.1| - 0.03 14.2 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain LigB PF02900.18 gi|312137117|ref|YP_004004454.1| - 0.03 13.4 0.0 0.045 12.8 0.0 1.4 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase HTH_6 PF01418.17 gi|312137117|ref|YP_004004454.1| - 0.14 12.1 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family GHMP_kinases_N PF00288.26 gi|312137118|ref|YP_004004455.1| - 9e-15 54.7 0.3 9e-15 54.7 0.3 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|312137118|ref|YP_004004455.1| - 6.1e-10 39.3 0.1 1.1e-09 38.5 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Pox_A12 PF04651.13 gi|312137118|ref|YP_004004455.1| - 0.0062 16.6 0.1 0.013 15.5 0.1 1.6 1 0 0 1 1 1 1 Poxvirus A12 protein AA_kinase PF00696.28 gi|312137119|ref|YP_004004456.1| - 3.2e-49 167.7 0.0 3.6e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|312137120|ref|YP_004004457.1| - 1.7e-35 122.7 0.5 6.1e-25 88.0 1.2 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|312137120|ref|YP_004004457.1| - 6.6e-07 28.6 8.9 0.00026 20.1 7.6 3.0 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|312137120|ref|YP_004004457.1| - 4.8e-06 26.0 2.5 4.8e-06 26.0 2.5 2.0 1 1 1 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|312137120|ref|YP_004004457.1| - 2.2e-05 23.8 1.9 9.2e-05 21.8 0.1 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|312137120|ref|YP_004004457.1| - 7e-05 22.4 2.2 7e-05 22.4 2.2 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|312137120|ref|YP_004004457.1| - 0.00018 21.0 1.2 0.0072 15.8 0.1 2.9 3 1 0 3 3 3 1 Histidine biosynthesis protein ThiG PF05690.14 gi|312137120|ref|YP_004004457.1| - 0.00066 19.1 4.4 0.023 14.0 0.5 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|312137120|ref|YP_004004457.1| - 0.0016 17.6 0.3 0.021 14.0 0.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|312137120|ref|YP_004004457.1| - 0.1 11.7 0.5 0.29 10.2 0.5 1.8 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|312137120|ref|YP_004004457.1| - 3.9 6.7 6.6 4.5 6.6 0.5 2.6 2 1 0 2 2 2 0 Thiamine monophosphate synthase RMMBL PF07521.12 gi|312137121|ref|YP_004004458.1| - 2.5e-13 49.8 0.5 5.9e-12 45.4 0.1 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|312137121|ref|YP_004004458.1| - 1.4e-07 31.7 1.4 4.1e-07 30.2 0.8 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|312137121|ref|YP_004004458.1| - 3.1e-06 26.8 0.1 1.2e-05 25.0 0.2 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRTGG PF07085.12 gi|312137121|ref|YP_004004458.1| - 0.068 13.0 0.2 0.5 10.2 0.0 2.4 2 1 1 3 3 3 0 DRTGG domain polyprenyl_synt PF00348.17 gi|312137122|ref|YP_004004459.1| - 6.5e-81 271.2 0.2 8.6e-81 270.8 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase baeRF_family7 PF18849.1 gi|312137122|ref|YP_004004459.1| - 0.21 11.8 2.2 0.49 10.6 0.1 2.3 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 7 tRNA-synt_1c PF00749.21 gi|312137123|ref|YP_004004460.1| - 1.4e-84 283.7 0.2 1.4e-84 283.7 0.2 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|312137123|ref|YP_004004460.1| - 1.3e-27 96.8 0.1 1.3e-27 96.8 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|312137123|ref|YP_004004460.1| - 0.0031 16.5 0.0 1 8.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) FKBP_N PF01346.18 gi|312137123|ref|YP_004004460.1| - 0.081 13.9 0.8 1.3 10.1 1.0 2.3 2 0 0 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase OHCU_decarbox PF09349.10 gi|312137123|ref|YP_004004460.1| - 0.089 13.3 0.3 0.29 11.6 0.2 1.8 2 1 0 2 2 2 0 OHCU decarboxylase Aminotran_1_2 PF00155.21 gi|312137124|ref|YP_004004461.1| - 9.1e-34 117.2 0.0 1.6e-33 116.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II DUF3169 PF11368.8 gi|312137124|ref|YP_004004461.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) Beta_elim_lyase PF01212.21 gi|312137124|ref|YP_004004461.1| - 0.13 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Desulfoferrodox PF01880.18 gi|312137125|ref|YP_004004462.1| - 3.4e-21 75.6 0.1 3.4e-21 75.6 0.1 1.4 2 0 0 2 2 2 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|312137125|ref|YP_004004462.1| - 2.5e-19 68.6 6.7 4.2e-19 67.9 6.7 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|312137125|ref|YP_004004462.1| - 0.032 14.3 0.3 0.067 13.3 0.3 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Sigma_reg_N PF13800.6 gi|312137126|ref|YP_004004463.1| - 0.0072 16.6 0.9 0.0072 16.6 0.9 2.3 2 1 0 2 2 2 1 Sigma factor regulator N-terminal SMBP PF16785.5 gi|312137126|ref|YP_004004463.1| - 0.017 15.3 1.7 8.9 6.6 0.0 2.8 2 1 1 3 3 3 0 Small metal-binding protein YfdX PF10938.8 gi|312137126|ref|YP_004004463.1| - 0.051 13.5 0.2 2.9 7.8 0.0 2.7 2 1 1 3 3 3 0 YfdX protein DUF3533 PF12051.8 gi|312137126|ref|YP_004004463.1| - 0.12 11.2 5.4 0.12 11.3 4.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3533) Tetraspanin PF00335.20 gi|312137126|ref|YP_004004463.1| - 0.14 11.9 0.5 0.26 11.0 0.4 1.4 1 1 0 1 1 1 0 Tetraspanin family FixQ PF05545.11 gi|312137126|ref|YP_004004463.1| - 0.41 10.6 2.3 1.7 8.7 0.3 2.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ ABC2_membrane_3 PF12698.7 gi|312137126|ref|YP_004004463.1| - 0.44 9.6 6.0 0.58 9.2 6.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein YMF19 PF02326.15 gi|312137126|ref|YP_004004463.1| - 1.1 10.1 4.9 0.53 11.1 1.2 2.1 1 1 0 2 2 2 0 Plant ATP synthase F0 DNA_pol_B_exo1 PF03104.19 gi|312137127|ref|YP_004004464.1| - 5e-46 157.4 6.9 1.1e-45 156.3 6.9 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B PF00136.21 gi|312137127|ref|YP_004004464.1| - 2.3e-40 138.7 0.0 4.2e-40 137.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo2 PF10108.9 gi|312137127|ref|YP_004004464.1| - 6.4e-11 42.3 0.0 1.1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|312137127|ref|YP_004004464.1| - 1.2e-09 38.4 0.2 4.9e-09 36.4 0.2 2.1 1 1 0 1 1 1 1 RNase_H superfamily DUF643 PF04867.12 gi|312137127|ref|YP_004004464.1| - 1.3 9.7 9.3 0.16 12.6 0.6 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF643) DUF521 PF04412.13 gi|312137128|ref|YP_004004465.1| - 2.5e-163 543.5 0.2 2.8e-163 543.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.20 gi|312137128|ref|YP_004004465.1| - 0.032 13.2 0.4 0.052 12.5 0.4 1.2 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) DHHA1 PF02272.19 gi|312137129|ref|YP_004004466.1| - 1.7e-17 64.1 1.5 1.7e-17 64.1 1.5 2.2 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|312137129|ref|YP_004004466.1| - 0.00018 21.7 0.2 0.00035 20.8 0.2 1.5 1 0 0 1 1 1 1 DHH family Ribosomal_S15 PF00312.22 gi|312137130|ref|YP_004004467.1| - 7.9e-21 74.1 0.6 1.1e-20 73.6 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.12 gi|312137130|ref|YP_004004467.1| - 1.8e-17 63.1 0.1 6e-17 61.4 0.1 1.9 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain HTH_7 PF02796.15 gi|312137130|ref|YP_004004467.1| - 0.035 14.2 1.2 0.1 12.7 0.0 2.5 4 0 0 4 4 4 0 Helix-turn-helix domain of resolvase Ham1p_like PF01725.16 gi|312137131|ref|YP_004004468.1| - 1.5e-52 178.2 0.0 1.7e-52 178.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Virulence_fact PF13769.6 gi|312137131|ref|YP_004004468.1| - 0.11 12.8 0.1 0.19 12.0 0.1 1.3 1 0 0 1 1 1 0 Virulence factor Peptidase_M22 PF00814.25 gi|312137132|ref|YP_004004469.1| - 3e-96 322.3 0.0 4.2e-96 321.8 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Pkinase PF00069.25 gi|312137132|ref|YP_004004469.1| - 7.5e-12 45.2 2.8 1.3e-11 44.4 2.8 1.3 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|312137132|ref|YP_004004469.1| - 5.6e-11 42.4 0.1 1.1e-10 41.4 0.1 1.5 1 1 0 1 1 1 1 RIO1 family Pkinase_Tyr PF07714.17 gi|312137132|ref|YP_004004469.1| - 4e-10 39.4 0.3 6.7e-10 38.7 0.3 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|312137132|ref|YP_004004469.1| - 1.1e-08 34.6 0.2 2.7e-08 33.4 0.1 1.7 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|312137132|ref|YP_004004469.1| - 0.00018 21.5 0.0 0.016 15.1 0.1 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|312137132|ref|YP_004004469.1| - 0.0028 17.3 0.1 0.0048 16.5 0.1 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase Carbam_trans_N PF02543.15 gi|312137132|ref|YP_004004469.1| - 0.038 13.7 0.0 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus PAP2 PF01569.21 gi|312137133|ref|YP_004004470.1| - 2.9e-28 98.3 3.3 4e-28 97.9 2.1 1.7 1 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|312137133|ref|YP_004004470.1| - 7.2e-11 42.1 5.9 7.9e-10 38.7 5.9 2.0 1 1 0 1 1 1 1 PAP2 superfamily DUF212 PF02681.14 gi|312137133|ref|YP_004004470.1| - 0.00086 19.4 1.8 0.013 15.6 0.0 2.2 1 1 1 2 2 2 1 Divergent PAP2 family PAP2_C PF14360.6 gi|312137133|ref|YP_004004470.1| - 0.0022 18.5 1.5 0.0022 18.5 1.5 2.4 2 0 0 2 2 2 1 PAP2 superfamily C-terminal YesK PF14150.6 gi|312137133|ref|YP_004004470.1| - 9.6 6.5 12.4 4.1 7.7 2.2 2.4 2 1 0 2 2 2 0 YesK-like protein eRF1_2 PF03464.15 gi|312137134|ref|YP_004004471.1| - 2.7e-47 160.4 0.0 1.5e-46 158.0 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|312137134|ref|YP_004004471.1| - 2.3e-31 108.6 1.4 8.6e-31 106.8 1.4 2.0 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|312137134|ref|YP_004004471.1| - 2.9e-18 66.5 0.0 3.3e-17 63.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|312137134|ref|YP_004004471.1| - 5.9e-16 58.6 0.0 9.3e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|312137134|ref|YP_004004471.1| - 2.3e-15 57.0 0.0 5e-15 56.0 0.0 1.6 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family12 PF18856.1 gi|312137134|ref|YP_004004471.1| - 0.01 16.5 0.0 0.042 14.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 Thioredoxin_8 PF13905.6 gi|312137134|ref|YP_004004471.1| - 0.021 15.1 0.1 2.9 8.3 0.0 2.7 2 0 0 2 2 2 0 Thioredoxin-like O-FucT PF10250.9 gi|312137134|ref|YP_004004471.1| - 0.047 13.4 0.4 0.5 10.0 0.0 2.3 2 1 1 3 3 3 0 GDP-fucose protein O-fucosyltransferase Clr5 PF14420.6 gi|312137134|ref|YP_004004471.1| - 0.049 13.9 0.1 0.22 11.7 0.0 2.1 2 0 0 2 2 2 0 Clr5 domain SpoU_sub_bind PF08032.12 gi|312137134|ref|YP_004004471.1| - 0.061 13.6 0.0 0.26 11.6 0.0 2.1 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding DUF308 PF03729.13 gi|312137135|ref|YP_004004472.1| - 5.1e-05 23.5 52.4 0.00017 21.8 20.5 3.1 2 1 0 3 3 3 3 Short repeat of unknown function (DUF308) DUF2116 PF09889.9 gi|312137136|ref|YP_004004473.1| - 6.5e-23 80.5 1.2 7.1e-23 80.4 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|312137136|ref|YP_004004473.1| - 0.0033 17.4 9.4 0.051 13.6 1.1 1.3 1 1 1 2 2 2 2 Double zinc ribbon UPF0547 PF10571.9 gi|312137136|ref|YP_004004473.1| - 0.0054 16.8 5.7 0.03 14.4 6.2 1.8 1 1 1 2 2 2 1 Uncharacterised protein family UPF0547 zf-dskA_traR PF01258.17 gi|312137136|ref|YP_004004473.1| - 0.034 14.1 1.1 0.058 13.3 1.1 1.5 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|312137136|ref|YP_004004473.1| - 0.035 13.5 4.2 0.052 13.0 4.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Rhodanese_C PF12368.8 gi|312137136|ref|YP_004004473.1| - 0.055 13.9 0.3 0.062 13.7 0.3 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal DUF2256 PF10013.9 gi|312137136|ref|YP_004004473.1| - 0.14 12.3 5.5 1.8 8.7 5.5 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) Rad50_zn_hook PF04423.14 gi|312137136|ref|YP_004004473.1| - 0.22 11.4 2.9 0.46 10.4 2.9 1.7 1 1 0 1 1 1 0 Rad50 zinc hook motif YhfH PF14149.6 gi|312137136|ref|YP_004004473.1| - 1.2 9.2 6.9 3 7.9 6.4 1.8 1 1 1 2 2 2 0 YhfH-like protein AA_kinase PF00696.28 gi|312137137|ref|YP_004004474.1| - 5.6e-27 94.9 0.4 1.9e-26 93.1 0.4 1.7 1 1 0 1 1 1 1 Amino acid kinase family Radical_SAM PF04055.21 gi|312137137|ref|YP_004004474.1| - 0.005 17.2 0.0 3.3 8.0 0.0 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Mur_ligase_C PF02875.21 gi|312137137|ref|YP_004004474.1| - 0.077 13.3 0.0 6.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain MreB_Mbl PF06723.13 gi|312137139|ref|YP_004004476.1| - 4.9e-100 334.5 16.1 5.7e-100 334.3 16.1 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 gi|312137139|ref|YP_004004476.1| - 2e-19 69.2 8.1 2.3e-16 59.1 5.6 2.1 1 1 1 2 2 2 2 Hsp70 protein Actin PF00022.19 gi|312137139|ref|YP_004004476.1| - 1.6e-11 43.5 0.6 2.8e-07 29.5 0.1 2.1 1 1 1 2 2 2 2 Actin FtsA PF14450.6 gi|312137139|ref|YP_004004476.1| - 5.2e-09 36.5 0.5 5.2e-09 36.5 0.5 2.5 2 1 0 2 2 2 1 Cell division protein FtsA DDR PF08841.10 gi|312137139|ref|YP_004004476.1| - 0.00019 20.5 0.3 0.00037 19.6 0.3 1.5 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain PilM_2 PF11104.8 gi|312137139|ref|YP_004004476.1| - 0.0065 15.5 0.4 2.4 7.1 0.0 2.8 2 1 1 3 3 3 2 Type IV pilus assembly protein PilM; DAHP_snth_FXD PF18152.1 gi|312137139|ref|YP_004004476.1| - 0.35 10.7 4.9 0.19 11.6 1.5 2.3 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain StbA PF06406.11 gi|312137139|ref|YP_004004476.1| - 0.56 9.4 5.8 0.15 11.2 1.4 2.3 2 1 0 2 2 2 0 StbA protein RNase_HII PF01351.18 gi|312137140|ref|YP_004004477.1| - 1.6e-56 191.3 1.9 1.8e-56 191.1 1.9 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF2924 PF11149.8 gi|312137140|ref|YP_004004477.1| - 0.016 15.6 0.1 0.026 14.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) SEP PF08059.13 gi|312137140|ref|YP_004004477.1| - 0.068 13.8 0.1 6.3 7.4 0.1 2.4 2 0 0 2 2 2 0 SEP domain PAS_5 PF07310.13 gi|312137140|ref|YP_004004477.1| - 0.086 12.6 0.1 2.2 8.1 0.0 2.1 2 0 0 2 2 2 0 PAS domain LRR_3 PF07725.12 gi|312137140|ref|YP_004004477.1| - 0.15 11.9 0.4 2.9 7.9 0.2 2.4 2 0 0 2 2 2 0 Leucine Rich Repeat PTS_IIB PF02302.17 gi|312137140|ref|YP_004004477.1| - 0.15 12.7 2.5 5.9 7.7 0.1 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Radical_SAM PF04055.21 gi|312137141|ref|YP_004004478.1| - 9.7e-23 81.4 0.0 2.2e-22 80.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|312137141|ref|YP_004004478.1| - 0.13 12.3 0.1 0.32 11.0 0.1 1.6 1 0 0 1 1 1 0 TRAM domain Fer4_14 PF13394.6 gi|312137141|ref|YP_004004478.1| - 0.16 12.1 0.0 0.42 10.7 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain CBFD_NFYB_HMF PF00808.23 gi|312137142|ref|YP_004004479.1| - 3.9e-22 78.3 0.4 4.6e-22 78.1 0.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|312137142|ref|YP_004004479.1| - 6.5e-13 49.2 0.1 7.7e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|312137142|ref|YP_004004479.1| - 1.9e-06 27.9 0.0 2.3e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|312137142|ref|YP_004004479.1| - 1.6e-05 25.0 0.2 1.9e-05 24.8 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|312137142|ref|YP_004004479.1| - 8.5e-05 22.9 0.0 9.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|312137142|ref|YP_004004479.1| - 0.0014 19.0 0.1 0.0017 18.8 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-31kDa PF02291.15 gi|312137142|ref|YP_004004479.1| - 0.0045 17.1 0.0 0.0051 16.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit EPSP_synthase PF00275.20 gi|312137142|ref|YP_004004479.1| - 0.025 13.3 0.1 0.027 13.2 0.1 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABC_tran PF00005.27 gi|312137143|ref|YP_004004480.1| - 6.9e-40 136.7 0.0 5.5e-19 69.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|312137143|ref|YP_004004480.1| - 1.4e-12 47.5 2.7 0.00011 21.8 0.1 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|312137143|ref|YP_004004480.1| - 2.9e-10 39.8 2.0 6.6e-10 38.6 2.0 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|312137143|ref|YP_004004480.1| - 4e-08 33.4 11.1 0.0075 16.1 1.3 4.3 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|312137143|ref|YP_004004480.1| - 6.5e-07 28.9 3.5 6.5e-07 28.9 3.5 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|312137143|ref|YP_004004480.1| - 3.3e-05 23.9 0.0 0.0025 17.7 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain AAA PF00004.29 gi|312137143|ref|YP_004004480.1| - 0.00013 22.4 0.0 0.37 11.2 0.0 3.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|312137143|ref|YP_004004480.1| - 0.00014 21.9 7.5 0.00024 21.2 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137143|ref|YP_004004480.1| - 0.00052 20.0 11.7 0.00068 19.6 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.6 gi|312137143|ref|YP_004004480.1| - 0.00073 19.3 6.1 0.024 14.4 0.2 2.7 2 1 0 3 3 3 2 AAA ATPase domain Fer4_9 PF13187.6 gi|312137143|ref|YP_004004480.1| - 0.00094 19.3 7.6 0.0018 18.4 7.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312137143|ref|YP_004004480.1| - 0.0014 19.1 7.2 0.0028 18.2 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312137143|ref|YP_004004480.1| - 0.0015 18.6 9.0 0.0024 17.9 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|312137143|ref|YP_004004480.1| - 0.0019 18.1 0.0 0.11 12.4 0.0 2.8 3 0 0 3 3 3 1 RsgA GTPase AAA_24 PF13479.6 gi|312137143|ref|YP_004004480.1| - 0.002 17.9 0.2 1.6 8.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|312137143|ref|YP_004004480.1| - 0.0035 17.5 0.0 2 8.7 0.1 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RuvB_N PF05496.12 gi|312137143|ref|YP_004004480.1| - 0.0061 16.3 0.0 3.6 7.3 0.0 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Fer4_2 PF12797.7 gi|312137143|ref|YP_004004480.1| - 0.0065 16.5 8.2 0.008 16.2 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain RNA_helicase PF00910.22 gi|312137143|ref|YP_004004480.1| - 0.016 15.5 0.0 3.5 8.0 0.0 2.7 2 0 0 2 2 2 0 RNA helicase Fer4_16 PF13484.6 gi|312137143|ref|YP_004004480.1| - 0.022 15.7 6.8 0.26 12.2 2.4 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain AAA_22 PF13401.6 gi|312137143|ref|YP_004004480.1| - 0.023 15.0 0.0 16 5.7 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|312137143|ref|YP_004004480.1| - 0.025 15.1 0.0 0.39 11.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|312137143|ref|YP_004004480.1| - 0.026 14.8 0.0 14 5.9 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.6 gi|312137143|ref|YP_004004480.1| - 0.034 14.5 0.0 0.42 11.0 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|312137143|ref|YP_004004480.1| - 0.049 13.7 0.2 4 7.6 0.1 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase SpoIISA_toxin PF14171.6 gi|312137143|ref|YP_004004480.1| - 0.051 13.3 0.3 0.095 12.4 0.3 1.5 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system AAA_29 PF13555.6 gi|312137143|ref|YP_004004480.1| - 0.089 12.6 0.2 0.55 10.0 0.1 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|312137143|ref|YP_004004480.1| - 0.1 12.8 0.1 23 5.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|312137143|ref|YP_004004480.1| - 0.1 12.3 0.0 2.4 7.8 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|312137143|ref|YP_004004480.1| - 0.14 12.7 0.2 0.14 12.7 0.2 3.8 2 2 2 4 4 4 0 AAA domain AAA_14 PF13173.6 gi|312137143|ref|YP_004004480.1| - 0.15 12.1 2.9 8.1 6.5 0.7 3.4 2 2 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|312137143|ref|YP_004004480.1| - 0.16 11.5 1.1 14 5.2 0.3 3.0 2 1 0 2 2 2 0 AAA domain Fer4_17 PF13534.6 gi|312137143|ref|YP_004004480.1| - 3.3 8.3 10.4 55 4.4 10.4 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137143|ref|YP_004004480.1| - 5.6 8.1 15.1 1.3 10.1 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137143|ref|YP_004004480.1| - 6.7 7.2 7.2 5.8 7.4 2.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Aminotran_1_2 PF00155.21 gi|312137145|ref|YP_004004482.1| - 2.3e-38 132.3 0.0 2.6e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|312137145|ref|YP_004004482.1| - 2.1e-12 46.7 0.0 3.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|312137145|ref|YP_004004482.1| - 4.6e-06 26.2 0.0 0.00023 20.6 0.0 2.0 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|312137145|ref|YP_004004482.1| - 0.0011 18.4 0.0 0.0041 16.4 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|312137145|ref|YP_004004482.1| - 0.024 13.2 0.0 0.043 12.3 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Rad51 PF08423.11 gi|312137146|ref|YP_004004483.1| - 2.6e-27 95.7 0.0 3.1e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|312137146|ref|YP_004004483.1| - 2.7e-15 56.5 0.6 5.3e-15 55.6 0.6 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|312137146|ref|YP_004004483.1| - 1.8e-11 44.0 0.0 3.3e-11 43.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|312137146|ref|YP_004004483.1| - 6.6e-10 39.0 0.0 3.6e-09 36.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|312137146|ref|YP_004004483.1| - 2e-08 33.9 1.1 3.3e-08 33.2 1.1 1.5 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|312137146|ref|YP_004004483.1| - 2e-06 27.6 0.0 2.8e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) ATPase_2 PF01637.18 gi|312137146|ref|YP_004004483.1| - 9.1e-06 25.7 0.3 1.4e-05 25.2 0.3 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_31 PF13614.6 gi|312137146|ref|YP_004004483.1| - 2.5e-05 24.3 0.5 0.00044 20.2 0.1 2.1 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|312137146|ref|YP_004004483.1| - 4.5e-05 23.5 0.1 8.4e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|312137146|ref|YP_004004483.1| - 6.7e-05 22.7 0.0 0.00019 21.2 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|312137146|ref|YP_004004483.1| - 0.00049 20.5 0.2 0.0011 19.4 0.2 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|312137146|ref|YP_004004483.1| - 0.00097 18.1 0.1 0.0024 16.9 0.1 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|312137146|ref|YP_004004483.1| - 0.0012 18.2 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.22 gi|312137146|ref|YP_004004483.1| - 0.0015 18.2 0.0 0.0029 17.3 0.0 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|312137146|ref|YP_004004483.1| - 0.0022 17.5 0.1 0.0035 16.8 0.1 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_18 PF13238.6 gi|312137146|ref|YP_004004483.1| - 0.0024 18.4 0.0 0.0059 17.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|312137146|ref|YP_004004483.1| - 0.0052 16.0 0.1 0.039 13.1 0.0 1.9 1 1 1 2 2 2 1 Anion-transporting ATPase DFP PF04127.15 gi|312137146|ref|YP_004004483.1| - 0.0053 16.6 0.1 0.31 10.8 0.1 2.3 1 1 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein ParA PF10609.9 gi|312137146|ref|YP_004004483.1| - 0.0054 16.2 0.0 0.0094 15.4 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase KTI12 PF08433.10 gi|312137146|ref|YP_004004483.1| - 0.0069 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_11 PF13086.6 gi|312137146|ref|YP_004004483.1| - 0.0099 15.7 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|312137146|ref|YP_004004483.1| - 0.027 13.8 0.2 0.085 12.2 0.0 1.7 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|312137146|ref|YP_004004483.1| - 0.041 14.1 0.0 0.1 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|312137146|ref|YP_004004483.1| - 0.047 14.1 0.0 0.09 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.15 gi|312137146|ref|YP_004004483.1| - 0.048 13.7 0.2 0.085 12.8 0.2 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit MeaB PF03308.16 gi|312137146|ref|YP_004004483.1| - 0.049 12.6 0.1 0.078 11.9 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|312137146|ref|YP_004004483.1| - 0.07 12.4 0.1 0.25 10.6 0.1 1.8 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 gi|312137146|ref|YP_004004483.1| - 0.073 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Flg_bbr_C PF06429.13 gi|312137146|ref|YP_004004483.1| - 0.088 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Flagellar basal body rod FlgEFG protein C-terminal MipZ PF09140.11 gi|312137146|ref|YP_004004483.1| - 0.14 11.4 0.1 0.34 10.1 0.1 1.7 1 1 0 1 1 1 0 ATPase MipZ Radical_SAM PF04055.21 gi|312137147|ref|YP_004004484.1| - 2.1e-20 73.7 0.0 7.5e-20 72.0 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Zn_ribbon_SprT PF17283.2 gi|312137147|ref|YP_004004484.1| - 0.0025 17.7 2.5 0.25 11.3 0.7 2.8 2 0 0 2 2 2 1 SprT-like zinc ribbon domain DiS_P_DiS PF06750.13 gi|312137147|ref|YP_004004484.1| - 0.011 15.8 0.3 0.011 15.8 0.3 2.1 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 gi|312137147|ref|YP_004004484.1| - 0.042 13.9 6.8 0.076 13.1 0.1 3.3 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|312137147|ref|YP_004004484.1| - 0.059 12.8 10.7 0.13 11.7 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|312137147|ref|YP_004004484.1| - 0.093 13.0 6.3 17 5.8 0.0 4.1 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|312137147|ref|YP_004004484.1| - 0.13 12.1 0.1 0.13 12.1 0.1 4.5 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L11 PF00298.19 gi|312137147|ref|YP_004004484.1| - 0.35 11.4 2.4 0.52 10.9 0.2 2.4 3 0 0 3 3 3 0 Ribosomal protein L11, RNA binding domain Zn_Tnp_IS1595 PF12760.7 gi|312137147|ref|YP_004004484.1| - 0.46 10.5 13.3 1.7 8.7 0.7 3.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|312137147|ref|YP_004004484.1| - 0.91 9.7 7.2 0.97 9.6 1.3 3.3 3 1 1 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DpnI PF06044.12 gi|312137147|ref|YP_004004484.1| - 1.2 8.7 7.0 4 7.0 1.6 2.8 2 1 0 2 2 2 0 Dam-replacing family ADK_lid PF05191.14 gi|312137147|ref|YP_004004484.1| - 3.5 7.7 0.0 3.5 7.7 0.0 3.7 4 0 0 4 4 4 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|312137147|ref|YP_004004484.1| - 4.7 6.8 0.0 4.7 6.8 0.0 3.9 4 0 0 4 4 4 0 TFIIB zinc-binding DUF483 PF04467.12 gi|312137148|ref|YP_004004485.1| - 4.8e-55 184.8 1.0 7e-55 184.3 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF483) Acyl-ACP_TE PF01643.17 gi|312137148|ref|YP_004004485.1| - 0.042 13.1 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Acyl-ACP thioesterase UPF0147 PF03685.13 gi|312137149|ref|YP_004004486.1| - 9.8e-36 121.7 5.0 1.1e-35 121.5 5.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|312137149|ref|YP_004004486.1| - 0.0074 16.5 0.4 1.2 9.5 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) Sec8_exocyst PF04048.14 gi|312137149|ref|YP_004004486.1| - 0.0077 16.1 0.4 0.012 15.5 0.4 1.4 1 0 0 1 1 1 1 Sec8 exocyst complex component specific domain DUF1296 PF06972.11 gi|312137149|ref|YP_004004486.1| - 0.13 12.4 3.6 3.7 7.8 0.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1296) GMC_oxred_N PF00732.19 gi|312137150|ref|YP_004004487.1| - 5.1e-16 58.9 0.5 2e-14 53.7 0.2 2.9 2 1 0 2 2 2 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|312137150|ref|YP_004004487.1| - 4e-13 50.1 0.0 9.8e-13 48.8 0.0 1.7 1 1 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|312137150|ref|YP_004004487.1| - 2e-09 37.0 0.1 0.00033 19.9 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|312137150|ref|YP_004004487.1| - 1e-08 34.8 6.0 8.3e-06 25.2 3.8 3.0 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|312137150|ref|YP_004004487.1| - 4.8e-08 33.0 2.7 1.1e-06 28.5 2.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|312137150|ref|YP_004004487.1| - 3.6e-07 29.7 0.3 0.004 16.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|312137150|ref|YP_004004487.1| - 6.3e-07 29.5 0.1 2.6e-06 27.6 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|312137150|ref|YP_004004487.1| - 4.5e-06 26.0 0.8 0.028 13.5 0.1 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|312137150|ref|YP_004004487.1| - 7.2e-05 21.7 2.5 0.026 13.2 0.5 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|312137150|ref|YP_004004487.1| - 0.00027 20.3 0.3 0.00046 19.6 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|312137150|ref|YP_004004487.1| - 0.00034 19.8 0.1 0.0032 16.6 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|312137150|ref|YP_004004487.1| - 0.00052 20.5 1.3 0.04 14.5 0.1 3.6 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|312137150|ref|YP_004004487.1| - 0.0021 17.3 4.6 0.12 11.6 0.4 2.8 2 1 1 3 3 3 2 Thi4 family Fer4_10 PF13237.6 gi|312137150|ref|YP_004004487.1| - 0.0031 17.6 0.6 0.0031 17.6 0.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain TrkA_N PF02254.18 gi|312137150|ref|YP_004004487.1| - 0.018 15.3 0.7 0.72 10.1 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain ApbA PF02558.16 gi|312137150|ref|YP_004004487.1| - 0.036 13.7 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4_6 PF12837.7 gi|312137150|ref|YP_004004487.1| - 1.9 8.7 7.5 0.89 9.7 4.5 2.0 2 0 0 2 2 1 0 4Fe-4S binding domain PMBR PF09373.10 gi|312137151|ref|YP_004004488.1| - 4.6e-15 54.9 0.2 9.2e-10 38.2 0.2 3.6 3 0 0 3 3 3 3 Pseudomurein-binding repeat Transglut_core PF01841.19 gi|312137151|ref|YP_004004488.1| - 0.0072 16.8 0.1 0.025 15.0 0.0 1.9 2 0 0 2 2 2 1 Transglutaminase-like superfamily Picorna_P3A PF06363.11 gi|312137151|ref|YP_004004488.1| - 0.11 12.4 0.0 4.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Picornaviridae P3A protein ATP-grasp_3 PF02655.14 gi|312137153|ref|YP_004004490.1| - 1.7e-39 135.4 1.1 3.6e-39 134.4 0.6 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|312137153|ref|YP_004004490.1| - 5.9e-13 48.7 1.7 1.2e-07 31.3 0.2 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|312137153|ref|YP_004004490.1| - 2.8e-09 36.8 0.1 1.7e-08 34.3 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.11 gi|312137153|ref|YP_004004490.1| - 1.1e-08 35.0 0.2 2.3e-08 33.9 0.2 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|312137153|ref|YP_004004490.1| - 1.8e-07 30.7 0.9 2.3e-05 23.8 0.3 3.0 2 1 0 2 2 2 1 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|312137153|ref|YP_004004490.1| - 0.00018 21.0 0.3 0.00051 19.6 0.3 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_TupA PF14305.6 gi|312137153|ref|YP_004004490.1| - 0.00019 21.3 0.3 0.0036 17.1 0.1 2.3 1 1 1 2 2 2 1 TupA-like ATPgrasp ATP-grasp PF02222.22 gi|312137153|ref|YP_004004490.1| - 0.0008 19.0 0.0 0.0032 17.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|312137153|ref|YP_004004490.1| - 0.0046 16.4 1.4 0.0078 15.6 0.0 2.1 3 0 0 3 3 3 1 Prokaryotic glutathione synthetase, ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|312137153|ref|YP_004004490.1| - 0.03 13.9 0.3 0.08 12.5 0.3 1.7 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus PYNP_C PF07831.13 gi|312137153|ref|YP_004004490.1| - 0.11 12.1 1.1 0.67 9.7 0.2 2.6 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF61 PF01886.16 gi|312137154|ref|YP_004004491.1| - 4.8e-42 143.0 6.4 5.4e-42 142.8 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 YqgF PF14639.6 gi|312137154|ref|YP_004004491.1| - 0.0015 18.3 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 XdhC_C PF13478.6 gi|312137154|ref|YP_004004491.1| - 0.029 14.9 0.0 0.043 14.3 0.0 1.2 1 0 0 1 1 1 0 XdhC Rossmann domain Phage_rep_org_N PF09681.10 gi|312137155|ref|YP_004004492.1| - 0.036 14.0 0.2 0.038 13.9 0.2 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF1205 PF06722.12 gi|312137156|ref|YP_004004493.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1205) CbiG_N PF11760.8 gi|312137157|ref|YP_004004494.1| - 4.4e-35 119.5 0.2 1.1e-34 118.3 0.1 1.7 1 1 1 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|312137157|ref|YP_004004494.1| - 1e-29 103.4 0.2 6e-29 100.9 0.2 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus DbpA PF03880.15 gi|312137157|ref|YP_004004494.1| - 0.0015 18.5 4.2 0.003 17.5 2.8 2.3 2 0 0 2 2 2 1 DbpA RNA binding domain CbiG_mid PF11761.8 gi|312137157|ref|YP_004004494.1| - 0.012 15.7 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Cobalamin biosynthesis central region Aldolase_II PF00596.21 gi|312137158|ref|YP_004004495.1| - 1.1e-43 149.3 0.0 1.3e-43 149.2 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Helicase_C PF00271.31 gi|312137159|ref|YP_004004496.1| - 1.2e-28 99.7 1.9 3.2e-27 95.1 0.3 3.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|312137159|ref|YP_004004496.1| - 4.8e-26 91.8 0.0 4.8e-26 91.8 0.0 3.1 3 1 0 3 3 3 1 ERCC4 domain DEAD PF00270.29 gi|312137159|ref|YP_004004496.1| - 1.4e-21 77.0 1.6 1.2e-19 70.7 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|312137159|ref|YP_004004496.1| - 1e-19 71.2 1.3 6.9e-19 68.5 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|312137159|ref|YP_004004496.1| - 2.2e-12 46.9 0.1 5.7e-12 45.6 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|312137159|ref|YP_004004496.1| - 4.4e-09 36.8 1.8 1.4e-08 35.2 0.3 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|312137159|ref|YP_004004496.1| - 3.3e-07 29.8 0.1 8.2e-07 28.6 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.16 gi|312137159|ref|YP_004004496.1| - 0.0015 18.0 0.0 0.0052 16.3 0.0 2.0 1 0 0 1 1 1 1 PhoH-like protein 5_3_exonuc PF01367.20 gi|312137159|ref|YP_004004496.1| - 0.009 16.6 0.2 0.009 16.6 0.2 3.9 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|312137159|ref|YP_004004496.1| - 0.012 15.8 0.0 0.061 13.6 0.0 2.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif IstB_IS21 PF01695.17 gi|312137159|ref|YP_004004496.1| - 0.044 13.5 0.2 0.28 10.9 0.0 2.4 3 0 0 3 3 3 0 IstB-like ATP binding protein HHH_8 PF14716.6 gi|312137159|ref|YP_004004496.1| - 0.073 13.4 1.1 1 9.8 0.4 3.1 2 1 1 3 3 3 0 Helix-hairpin-helix domain PaREP1 PF05942.11 gi|312137159|ref|YP_004004496.1| - 0.51 10.3 10.2 0.041 13.8 1.5 3.4 4 0 0 4 4 4 0 Archaeal PaREP1/PaREP8 family PTPLA PF04387.14 gi|312137160|ref|YP_004004497.1| - 0.24 11.1 3.5 0.24 11.1 2.9 1.4 1 1 0 1 1 1 0 Protein tyrosine phosphatase-like protein, PTPLA DUF11 PF01345.18 gi|312137161|ref|YP_004004498.1| - 5.5e-15 55.4 0.8 1.5e-14 54.1 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF11 Reg_prop PF07494.11 gi|312137161|ref|YP_004004498.1| - 1.3e-09 37.1 12.2 0.041 14.1 0.0 6.7 6 0 0 6 6 5 2 Two component regulator propeller NHL PF01436.21 gi|312137161|ref|YP_004004498.1| - 0.00011 22.0 8.8 0.0026 17.7 0.2 5.5 5 0 0 5 5 5 1 NHL repeat SBBP PF06739.11 gi|312137161|ref|YP_004004498.1| - 0.00014 21.8 18.5 0.13 12.3 0.1 6.3 6 0 0 6 6 6 2 Beta-propeller repeat SGL PF08450.12 gi|312137161|ref|YP_004004498.1| - 0.00018 21.1 3.9 0.025 14.2 0.1 3.7 2 1 0 3 3 3 1 SMP-30/Gluconolactonase/LRE-like region Adeno_E1B_55K PF01696.17 gi|312137161|ref|YP_004004498.1| - 0.0012 17.6 1.4 0.0021 16.8 1.4 1.3 1 0 0 1 1 1 1 Adenovirus EB1 55K protein / large t-antigen bMG10 PF17973.1 gi|312137161|ref|YP_004004498.1| - 0.0018 18.5 0.0 0.0034 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial Alpha-2-macroglobulin MG10 domain Beta_helix PF13229.6 gi|312137161|ref|YP_004004498.1| - 0.0018 18.1 20.3 0.0018 18.1 20.3 4.8 3 2 1 4 4 4 2 Right handed beta helix region CARDB PF07705.11 gi|312137161|ref|YP_004004498.1| - 0.0035 17.6 0.5 0.02 15.2 0.5 2.4 1 0 0 1 1 1 1 CARDB TRAP_beta PF05753.14 gi|312137161|ref|YP_004004498.1| - 0.0036 16.7 0.0 0.029 13.8 0.1 2.3 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|312137161|ref|YP_004004498.1| - 0.0091 16.2 0.1 0.044 14.0 0.0 2.1 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase PQQ PF01011.21 gi|312137161|ref|YP_004004498.1| - 0.066 13.2 6.8 24 5.1 0.0 4.8 4 0 0 4 4 4 0 PQQ enzyme repeat ApeA_NTD1 PF18862.1 gi|312137161|ref|YP_004004498.1| - 0.69 9.4 4.7 6 6.4 0.0 3.3 2 1 1 3 3 3 0 ApeA N-terminal domain 1 Chlam_PMP PF02415.17 gi|312137161|ref|YP_004004498.1| - 1 10.0 42.2 1.4 9.6 3.7 8.2 9 0 0 9 9 9 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Fil_haemagg PF05594.14 gi|312137161|ref|YP_004004498.1| - 1.1 9.9 12.3 5.6 7.6 0.9 4.2 4 1 0 4 4 3 0 Haemagluttinin repeat PLDc PF00614.22 gi|312137161|ref|YP_004004498.1| - 1.4 9.2 5.3 0.76 10.1 0.2 3.0 3 0 0 3 3 2 0 Phospholipase D Active site motif Peptidase_C39 PF03412.15 gi|312137163|ref|YP_004004500.1| - 4.3e-33 114.0 0.1 6.7e-33 113.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.6 gi|312137163|ref|YP_004004500.1| - 3.9e-07 30.7 1.0 3.5e-06 27.6 0.9 2.6 1 1 1 2 2 2 1 Peptidase_C39 like family DUF3335 PF11814.8 gi|312137163|ref|YP_004004500.1| - 0.0014 18.1 0.3 0.0099 15.4 0.2 2.0 1 1 2 3 3 3 1 Peptidase_C39 like family Phytochelatin PF05023.14 gi|312137163|ref|YP_004004500.1| - 0.016 14.5 0.9 0.038 13.2 0.1 2.0 2 1 0 2 2 2 0 Phytochelatin synthase DUF2156 PF09924.9 gi|312137163|ref|YP_004004500.1| - 0.077 12.0 0.2 0.12 11.4 0.2 1.4 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) SpoIIM PF01944.17 gi|312137164|ref|YP_004004501.1| - 2.2e-11 44.1 10.5 2.2e-11 44.1 10.5 2.1 2 0 0 2 2 2 1 Stage II sporulation protein M Claudin_2 PF13903.6 gi|312137164|ref|YP_004004501.1| - 0.058 13.1 0.2 0.058 13.1 0.2 2.5 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Cytochrome-c551 PF10643.9 gi|312137164|ref|YP_004004501.1| - 1 8.9 4.8 1.9 8.0 4.8 1.4 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 TF_Zn_Ribbon PF08271.12 gi|312137165|ref|YP_004004502.1| - 0.0033 16.9 1.4 0.91 9.1 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|312137165|ref|YP_004004502.1| - 0.0034 17.7 1.0 0.0053 17.1 1.0 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-CSL PF05207.13 gi|312137165|ref|YP_004004502.1| - 0.0081 15.9 0.6 0.011 15.4 0.6 1.2 1 0 0 1 1 1 1 CSL zinc finger zf-Mss51 PF13824.6 gi|312137165|ref|YP_004004502.1| - 0.011 15.9 1.2 0.022 14.9 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.16 gi|312137165|ref|YP_004004502.1| - 0.012 15.5 1.8 0.11 12.4 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin_2 PF18073.1 gi|312137165|ref|YP_004004502.1| - 0.014 15.1 6.1 0.43 10.3 0.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain ADK_lid PF05191.14 gi|312137165|ref|YP_004004502.1| - 0.024 14.6 5.9 0.12 12.4 5.9 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-RRN7 PF11781.8 gi|312137165|ref|YP_004004502.1| - 0.051 13.3 3.2 0.97 9.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_Rg PF17915.1 gi|312137165|ref|YP_004004502.1| - 0.052 13.0 1.0 0.26 10.7 0.1 2.2 2 0 0 2 2 2 0 Reverse gyrase zinc finger Ribosomal_L37e PF01907.19 gi|312137165|ref|YP_004004502.1| - 0.053 13.7 4.3 0.42 10.8 0.9 2.4 2 1 0 2 2 2 0 Ribosomal protein L37e zf_C2H2_13 PF18508.1 gi|312137165|ref|YP_004004502.1| - 0.08 12.5 0.6 0.08 12.5 0.6 1.9 2 0 0 2 2 1 0 Zinc finger domain DUF4379 PF14311.6 gi|312137165|ref|YP_004004502.1| - 0.084 13.3 5.0 0.25 11.7 4.9 1.9 1 1 1 2 2 2 0 Probable Zinc-ribbon domain DUF1610 PF07754.11 gi|312137165|ref|YP_004004502.1| - 0.096 12.7 3.1 0.13 12.2 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.7 gi|312137165|ref|YP_004004502.1| - 0.11 13.0 1.2 3.2 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TarH PF02203.15 gi|312137165|ref|YP_004004502.1| - 0.11 12.4 0.2 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue MuF_C PF18819.1 gi|312137165|ref|YP_004004502.1| - 0.15 12.1 0.1 0.18 11.8 0.1 1.1 1 0 0 1 1 1 0 Phage MuF-C-terminal domain Terminase_GpA PF05876.12 gi|312137165|ref|YP_004004502.1| - 0.2 10.1 0.2 0.22 10.0 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-H2C2_2 PF13465.6 gi|312137165|ref|YP_004004502.1| - 0.22 12.0 1.3 28 5.3 0.1 2.5 2 1 0 2 2 2 0 Zinc-finger double domain CpXC PF14353.6 gi|312137165|ref|YP_004004502.1| - 0.31 11.1 1.0 1.8 8.6 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Sgf11 PF08209.11 gi|312137165|ref|YP_004004502.1| - 0.55 9.8 3.5 14 5.4 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.6 gi|312137165|ref|YP_004004502.1| - 0.55 9.7 8.6 3.2 7.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|312137165|ref|YP_004004502.1| - 0.75 9.8 4.0 6.8 6.8 4.5 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|312137165|ref|YP_004004502.1| - 0.91 9.5 5.6 14 5.6 5.6 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|312137165|ref|YP_004004502.1| - 6.3 6.7 9.0 15 5.5 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CBFD_NFYB_HMF PF00808.23 gi|312137167|ref|YP_004004504.1| - 0.00061 20.0 0.7 0.0012 19.1 0.2 1.7 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone THP2 PF09432.10 gi|312137167|ref|YP_004004504.1| - 0.005 16.9 1.3 0.015 15.4 1.2 1.7 1 1 0 1 1 1 1 Tho complex subunit THP2 DUF5097 PF17020.5 gi|312137167|ref|YP_004004504.1| - 0.023 15.0 1.0 0.029 14.7 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5097) DUF677 PF05055.12 gi|312137167|ref|YP_004004504.1| - 0.11 11.4 2.4 0.13 11.1 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Peptidase_M29 PF02073.15 gi|312137167|ref|YP_004004504.1| - 0.11 11.2 0.1 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) SOGA PF11365.8 gi|312137167|ref|YP_004004504.1| - 0.5 11.5 3.9 13 7.0 0.1 2.8 2 1 0 2 2 2 0 Protein SOGA zf-ZPR1 PF03367.13 gi|312137168|ref|YP_004004505.1| - 2.5e-39 134.7 0.5 3e-39 134.4 0.5 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|312137168|ref|YP_004004505.1| - 0.15 12.5 0.3 0.26 11.7 0.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar 3H PF02829.14 gi|312137169|ref|YP_004004506.1| - 5.9e-24 84.2 1.2 9.9e-24 83.5 0.1 2.0 2 0 0 2 2 2 1 3H domain AAA_18 PF13238.6 gi|312137169|ref|YP_004004506.1| - 1.2e-09 38.8 0.1 4.5e-09 36.9 0.1 2.0 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|312137169|ref|YP_004004506.1| - 1.7e-06 28.5 1.5 7.9e-05 23.1 0.7 2.7 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|312137169|ref|YP_004004506.1| - 7.5e-05 22.9 0.1 0.076 13.2 0.0 2.7 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.12 gi|312137169|ref|YP_004004506.1| - 0.00012 21.4 0.8 0.0062 15.8 0.8 2.3 1 1 0 1 1 1 1 Zeta toxin Hydrolase_6 PF13344.6 gi|312137169|ref|YP_004004506.1| - 0.0033 17.5 0.0 0.017 15.2 0.0 2.2 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase CbiA PF01656.23 gi|312137169|ref|YP_004004506.1| - 0.005 16.9 0.2 0.065 13.3 0.2 2.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|312137169|ref|YP_004004506.1| - 0.007 16.6 0.1 0.065 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|312137169|ref|YP_004004506.1| - 0.0083 16.0 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Serum_albumin PF00273.20 gi|312137169|ref|YP_004004506.1| - 0.03 14.1 0.2 0.13 12.0 0.1 2.0 2 0 0 2 2 2 0 Serum albumin family AAA_16 PF13191.6 gi|312137169|ref|YP_004004506.1| - 0.036 14.4 0.0 0.068 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|312137169|ref|YP_004004506.1| - 0.046 13.8 0.5 0.42 10.7 0.0 2.6 3 0 0 3 3 3 0 Shikimate kinase AAA_22 PF13401.6 gi|312137169|ref|YP_004004506.1| - 0.046 14.0 0.2 0.46 10.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain ADK PF00406.22 gi|312137169|ref|YP_004004506.1| - 0.047 13.8 0.1 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Adenylate kinase Cytidylate_kin PF02224.18 gi|312137169|ref|YP_004004506.1| - 0.061 13.0 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|312137169|ref|YP_004004506.1| - 0.086 13.2 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|312137169|ref|YP_004004506.1| - 0.087 13.3 0.3 0.23 11.9 0.2 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) ParA PF10609.9 gi|312137169|ref|YP_004004506.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase RsgA_GTPase PF03193.16 gi|312137169|ref|YP_004004506.1| - 0.15 12.0 0.0 0.93 9.4 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase betaPIX_CC PF16523.5 gi|312137169|ref|YP_004004506.1| - 0.66 9.8 3.5 1 9.2 0.5 2.9 3 1 0 3 3 3 0 betaPIX coiled coil Robl_LC7 PF03259.17 gi|312137170|ref|YP_004004507.1| - 1.3e-19 69.7 0.3 1.6e-19 69.5 0.3 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF5093 PF17011.5 gi|312137171|ref|YP_004004508.1| - 0.0022 18.3 4.8 0.0025 18.1 4.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5093) SSrecog PF03531.14 gi|312137171|ref|YP_004004508.1| - 0.073 13.0 1.0 0.077 12.9 1.0 1.2 1 0 0 1 1 1 0 Structure-specific recognition protein (SSRP1) CbiN PF02553.15 gi|312137173|ref|YP_004004510.1| - 7.3e-25 86.7 0.1 9e-25 86.5 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|312137174|ref|YP_004004511.1| - 9.8e-50 169.2 6.7 1.3e-49 168.8 6.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein AIRC PF00731.20 gi|312137175|ref|YP_004004512.1| - 1.2e-96 320.2 0.6 1.2e-49 167.7 0.2 2.0 2 0 0 2 2 2 2 AIR carboxylase Glutaredoxin PF00462.24 gi|312137175|ref|YP_004004512.1| - 0.02 15.1 1.7 1.8 8.9 0.0 3.2 3 0 0 3 3 3 0 Glutaredoxin N6_Mtase PF02384.16 gi|312137175|ref|YP_004004512.1| - 0.035 13.4 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Sigma54_AID PF00309.20 gi|312137175|ref|YP_004004512.1| - 0.053 13.4 0.5 0.12 12.3 0.5 1.5 1 0 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) M20_dimer PF07687.14 gi|312137175|ref|YP_004004512.1| - 0.13 12.2 0.3 2 8.4 0.0 2.4 2 1 0 2 2 2 0 Peptidase dimerisation domain UbiD PF01977.16 gi|312137176|ref|YP_004004513.1| - 8.7e-116 387.1 0.2 9.8e-116 386.9 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Peptidase_C31 PF05410.13 gi|312137176|ref|YP_004004513.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Porcine arterivirus-type cysteine proteinase alpha DDR_swiveling PF18427.1 gi|312137176|ref|YP_004004513.1| - 0.16 12.0 1.3 0.36 10.8 0.3 2.1 1 1 1 2 2 2 0 DD-reactivating factor swiveling domain Lactamase_B_3 PF13483.6 gi|312137177|ref|YP_004004514.1| - 2.8e-07 30.6 0.0 4.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|312137177|ref|YP_004004514.1| - 1.2e-06 28.1 0.0 1.8e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|312137177|ref|YP_004004514.1| - 1.4e-05 25.2 0.4 3e-05 24.1 0.4 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Glycos_transf_2 PF00535.26 gi|312137178|ref|YP_004004515.1| - 7.1e-34 117.1 0.0 1.2e-33 116.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137178|ref|YP_004004515.1| - 2.3e-32 112.7 0.0 2.9e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|312137178|ref|YP_004004515.1| - 1.3e-27 97.0 9.0 6.8e-27 94.7 9.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|312137178|ref|YP_004004515.1| - 6.5e-20 71.3 0.0 2.9e-19 69.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|312137178|ref|YP_004004515.1| - 2.5e-10 40.3 0.1 4e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 gi|312137178|ref|YP_004004515.1| - 1.4e-06 27.3 8.8 4.6e-05 22.2 0.0 2.4 2 1 1 3 3 3 2 Chitin synthase Thioredoxin_8 PF13905.6 gi|312137178|ref|YP_004004515.1| - 0.0039 17.5 0.4 0.011 16.1 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like Glyco_tranf_2_4 PF13704.6 gi|312137178|ref|YP_004004515.1| - 0.03 14.8 0.0 0.059 13.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|312137178|ref|YP_004004515.1| - 0.042 13.5 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family Glyco_transf_49 PF13896.6 gi|312137178|ref|YP_004004515.1| - 0.068 12.5 0.1 0.092 12.1 0.1 1.3 1 1 0 1 1 1 0 Glycosyl-transferase for dystroglycan BBS2_Mid PF14783.6 gi|312137179|ref|YP_004004516.1| - 0.051 13.6 0.2 0.063 13.3 0.2 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region Radical_SAM PF04055.21 gi|312137180|ref|YP_004004517.1| - 2.9e-23 83.1 0.1 6.1e-23 82.0 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137180|ref|YP_004004517.1| - 5.1e-05 23.6 0.1 0.00012 22.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.7 gi|312137180|ref|YP_004004517.1| - 0.0055 16.7 6.1 0.0061 16.6 0.1 3.1 3 0 0 3 3 3 1 Double zinc ribbon Fer4_14 PF13394.6 gi|312137180|ref|YP_004004517.1| - 0.039 14.1 0.2 0.039 14.1 0.2 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF1699 PF08004.11 gi|312137180|ref|YP_004004517.1| - 0.051 13.3 0.0 15 5.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1699) Phage_RpbA PF10789.9 gi|312137180|ref|YP_004004517.1| - 0.068 13.2 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA DUF3256 PF11644.8 gi|312137180|ref|YP_004004517.1| - 0.11 11.9 0.5 0.16 11.4 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3256) YhfH PF14149.6 gi|312137180|ref|YP_004004517.1| - 0.12 12.4 0.3 0.12 12.4 0.3 3.2 4 0 0 4 4 3 0 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|312137180|ref|YP_004004517.1| - 0.12 12.1 0.1 0.12 12.1 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|312137180|ref|YP_004004517.1| - 0.14 11.6 0.2 0.14 11.6 0.2 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|312137180|ref|YP_004004517.1| - 1.3 9.2 8.7 4.9 7.4 2.1 3.6 3 1 1 4 4 4 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|312137180|ref|YP_004004517.1| - 4.6 7.2 11.4 46 4.0 0.9 4.4 4 0 0 4 4 4 0 zinc-ribbon domain AIRS PF00586.24 gi|312137181|ref|YP_004004518.1| - 1e-20 74.2 0.1 2e-20 73.3 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|312137181|ref|YP_004004518.1| - 1.5e-11 44.7 0.0 2.2e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF469 PF04320.14 gi|312137181|ref|YP_004004518.1| - 0.19 12.6 0.0 0.41 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein with unknown function (DUF469) OB_aCoA_assoc PF01796.17 gi|312137182|ref|YP_004004519.1| - 6e-23 80.6 0.0 8.1e-23 80.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|312137182|ref|YP_004004519.1| - 1.6e-12 47.0 0.2 2.4e-12 46.5 0.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|312137182|ref|YP_004004519.1| - 0.00078 19.3 4.4 0.05 13.5 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|312137182|ref|YP_004004519.1| - 0.0027 17.8 0.3 0.0043 17.2 0.3 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_6 PF14599.6 gi|312137182|ref|YP_004004519.1| - 0.0043 17.0 0.3 1.3 9.1 0.1 2.6 2 0 0 2 2 2 1 Zinc-ribbon DZR PF12773.7 gi|312137182|ref|YP_004004519.1| - 0.037 14.1 0.2 0.058 13.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|312137182|ref|YP_004004519.1| - 0.078 13.2 0.3 0.14 12.4 0.3 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.12 gi|312137182|ref|YP_004004519.1| - 0.13 11.8 3.1 2.7 7.6 0.4 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|312137182|ref|YP_004004519.1| - 0.32 10.8 3.8 6 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|312137182|ref|YP_004004519.1| - 4.5 6.8 7.8 6.3 6.4 0.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CbiX PF01903.17 gi|312137183|ref|YP_004004520.1| - 1.3e-34 118.7 0.7 1.7e-34 118.4 0.7 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|312137183|ref|YP_004004520.1| - 4.3e-10 39.4 0.7 4.7e-10 39.2 0.7 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|312137183|ref|YP_004004520.1| - 5.2e-05 22.5 0.0 0.00014 21.1 0.0 1.6 2 0 0 2 2 2 1 Ferrochelatase DUF4839 PF16127.5 gi|312137183|ref|YP_004004520.1| - 0.14 12.2 0.1 0.35 11.0 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4839) GCD14 PF08704.10 gi|312137184|ref|YP_004004521.1| - 9e-34 117.2 0.0 3.5e-31 108.8 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|312137184|ref|YP_004004521.1| - 1.5e-10 41.2 0.0 1.9e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|312137184|ref|YP_004004521.1| - 1.5e-09 37.9 0.0 2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312137184|ref|YP_004004521.1| - 6.4e-05 23.6 0.0 0.00013 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|312137184|ref|YP_004004521.1| - 0.00013 21.2 0.0 0.00025 20.3 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|312137184|ref|YP_004004521.1| - 0.00044 21.2 0.0 0.0019 19.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|312137184|ref|YP_004004521.1| - 0.0029 17.3 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 gi|312137184|ref|YP_004004521.1| - 0.0049 17.5 0.0 0.01 16.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|312137184|ref|YP_004004521.1| - 0.035 13.8 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|312137184|ref|YP_004004521.1| - 0.045 13.1 0.0 0.11 11.8 0.0 1.6 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|312137184|ref|YP_004004521.1| - 0.048 12.7 0.0 0.078 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|312137184|ref|YP_004004521.1| - 0.06 12.8 0.0 0.095 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.17 gi|312137184|ref|YP_004004521.1| - 0.073 12.2 0.1 0.15 11.1 0.1 1.6 1 1 0 1 1 1 0 Fibrillarin HMGL-like PF00682.19 gi|312137185|ref|YP_004004522.1| - 1.9e-85 286.6 0.2 2.8e-85 286.1 0.2 1.2 1 0 0 1 1 1 1 HMGL-like Aconitase PF00330.20 gi|312137186|ref|YP_004004523.1| - 1.8e-102 343.7 2.3 3.5e-63 214.2 0.3 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|312137186|ref|YP_004004523.1| - 0.059 12.1 0.1 0.059 12.1 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF521) DUF98 PF01947.16 gi|312137187|ref|YP_004004524.1| - 3.8e-32 111.3 0.1 4.5e-32 111.1 0.1 1.0 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase UTRA PF07702.13 gi|312137187|ref|YP_004004524.1| - 0.00013 21.9 0.0 0.00021 21.1 0.0 1.3 1 1 0 1 1 1 1 UTRA domain Chor_lyase PF04345.13 gi|312137187|ref|YP_004004524.1| - 0.00046 19.9 0.0 0.00054 19.6 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase XPG_I PF00867.18 gi|312137188|ref|YP_004004525.1| - 5.3e-29 100.4 0.2 1.9e-28 98.7 0.0 2.0 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|312137188|ref|YP_004004525.1| - 2.2e-22 79.4 0.0 4e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|312137188|ref|YP_004004525.1| - 3.2e-06 27.7 0.6 7.1e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|312137188|ref|YP_004004525.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain AAA_11 PF13086.6 gi|312137189|ref|YP_004004526.1| - 3.7e-57 194.1 0.3 1.1e-56 192.6 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|312137189|ref|YP_004004526.1| - 6.7e-57 192.3 0.0 1.2e-56 191.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|312137189|ref|YP_004004526.1| - 7.7e-12 45.3 0.0 1.2e-06 28.4 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|312137189|ref|YP_004004526.1| - 1.7e-08 34.9 0.0 1e-07 32.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|312137189|ref|YP_004004526.1| - 1.4e-07 31.5 0.0 0.15 11.7 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|312137189|ref|YP_004004526.1| - 1.8e-06 28.1 5.1 3e-05 24.1 3.8 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|312137189|ref|YP_004004526.1| - 1.3e-05 25.2 0.1 0.0067 16.3 0.0 2.7 3 0 0 3 3 3 1 Helicase PIF1 PF05970.14 gi|312137189|ref|YP_004004526.1| - 4.4e-05 22.8 0.1 0.014 14.6 0.0 2.7 3 0 0 3 3 3 1 PIF1-like helicase AAA_22 PF13401.6 gi|312137189|ref|YP_004004526.1| - 0.00025 21.4 1.0 0.0039 17.5 0.0 3.3 4 0 0 4 4 4 1 AAA domain T2SSE PF00437.20 gi|312137189|ref|YP_004004526.1| - 0.00035 19.7 0.1 0.00092 18.3 0.1 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein PhoH PF02562.16 gi|312137189|ref|YP_004004526.1| - 0.0036 16.8 0.1 1.2 8.5 0.0 3.0 2 1 1 3 3 3 1 PhoH-like protein Phe_tRNA-synt_N PF02912.18 gi|312137189|ref|YP_004004526.1| - 0.0074 16.2 0.5 0.034 14.1 0.5 2.1 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain ATPase_2 PF01637.18 gi|312137189|ref|YP_004004526.1| - 0.015 15.2 0.4 0.015 15.2 0.4 2.4 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|312137189|ref|YP_004004526.1| - 0.024 15.0 0.0 0.1 13.0 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain UvrD-helicase PF00580.21 gi|312137189|ref|YP_004004526.1| - 0.032 13.8 2.4 0.081 12.4 0.6 2.3 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain TrwB_AAD_bind PF10412.9 gi|312137189|ref|YP_004004526.1| - 0.037 13.0 0.0 0.067 12.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.26 gi|312137189|ref|YP_004004526.1| - 0.095 12.4 0.1 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain Flavi_DEAD PF07652.14 gi|312137189|ref|YP_004004526.1| - 0.15 12.0 0.3 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 Flavivirus DEAD domain UvrD_C_2 PF13538.6 gi|312137189|ref|YP_004004526.1| - 0.19 11.6 0.1 1.9 8.3 0.0 2.4 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain DivIC PF04977.15 gi|312137189|ref|YP_004004526.1| - 0.81 9.5 6.4 5.4 6.9 0.3 3.8 3 0 0 3 3 3 0 Septum formation initiator HSBP1 PF06825.12 gi|312137189|ref|YP_004004526.1| - 1.8 8.5 4.5 4.2 7.3 1.2 2.7 3 0 0 3 3 2 0 Heat shock factor binding protein 1 YvrJ PF12841.7 gi|312137189|ref|YP_004004526.1| - 2.4 7.7 6.3 22 4.7 0.8 3.2 2 0 0 2 2 2 0 YvrJ protein family MMR_HSR1_Xtn PF16897.5 gi|312137189|ref|YP_004004526.1| - 7.5 6.6 10.1 0.3 11.1 0.3 3.4 5 0 0 5 5 2 0 C-terminal region of MMR_HSR1 domain DUF2119 PF09892.9 gi|312137190|ref|YP_004004527.1| - 4e-75 251.3 2.4 4.5e-75 251.2 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Tn7_Tnp_TnsA_N PF08722.11 gi|312137190|ref|YP_004004527.1| - 0.069 13.4 0.7 0.14 12.4 0.7 1.5 1 0 0 1 1 1 0 TnsA endonuclease N terminal AdoHcyase PF05221.17 gi|312137191|ref|YP_004004528.1| - 1e-62 212.0 0.0 3.6e-32 111.7 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|312137191|ref|YP_004004528.1| - 1.5e-54 184.5 1.2 2.7e-54 183.6 1.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|312137191|ref|YP_004004528.1| - 9.8e-11 41.3 0.3 1.8e-10 40.5 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|312137191|ref|YP_004004528.1| - 1.5e-09 37.6 0.0 2.9e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|312137191|ref|YP_004004528.1| - 0.0035 16.7 1.1 0.0074 15.6 1.1 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|312137191|ref|YP_004004528.1| - 0.033 14.4 0.2 0.084 13.1 0.2 1.7 1 0 0 1 1 1 0 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|312137191|ref|YP_004004528.1| - 0.1 11.9 0.6 0.4 10.0 0.6 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AAA PF00004.29 gi|312137192|ref|YP_004004529.1| - 1.6e-102 339.2 0.0 3.1e-50 170.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|312137192|ref|YP_004004529.1| - 1.5e-35 120.7 3.1 2.1e-18 65.9 0.2 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|312137192|ref|YP_004004529.1| - 5.6e-32 109.8 1.5 9.3e-29 99.4 1.3 3.6 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|312137192|ref|YP_004004529.1| - 9.4e-18 64.9 0.0 1.6e-08 34.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|312137192|ref|YP_004004529.1| - 2.5e-16 59.8 0.0 5.1e-08 32.8 0.0 2.9 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|312137192|ref|YP_004004529.1| - 5.4e-15 56.2 0.1 4.4e-07 30.5 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|312137192|ref|YP_004004529.1| - 7.2e-15 54.5 1.2 1.3e-14 53.8 0.3 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.13 gi|312137192|ref|YP_004004529.1| - 7e-13 48.5 0.8 0.00013 21.3 0.0 3.5 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|312137192|ref|YP_004004529.1| - 2.3e-11 44.1 0.2 0.001 19.4 0.0 3.7 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|312137192|ref|YP_004004529.1| - 6.2e-11 42.6 0.0 0.00013 22.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|312137192|ref|YP_004004529.1| - 6.7e-11 42.3 1.5 0.00045 20.2 0.2 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|312137192|ref|YP_004004529.1| - 8.1e-11 42.1 0.0 6.5e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|312137192|ref|YP_004004529.1| - 2.2e-07 30.7 0.0 0.012 15.3 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|312137192|ref|YP_004004529.1| - 3e-07 30.3 0.1 0.032 14.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|312137192|ref|YP_004004529.1| - 5.6e-07 30.2 0.4 0.055 14.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|312137192|ref|YP_004004529.1| - 8.5e-07 29.3 0.0 0.061 13.7 0.0 3.0 3 0 0 3 3 2 2 RNA helicase Bac_DnaA PF00308.18 gi|312137192|ref|YP_004004529.1| - 1.1e-06 28.6 0.0 0.014 15.3 0.0 3.2 2 2 0 2 2 2 2 Bacterial dnaA protein Mg_chelatase PF01078.21 gi|312137192|ref|YP_004004529.1| - 1.3e-06 28.0 0.7 0.047 13.1 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|312137192|ref|YP_004004529.1| - 1.6e-06 28.5 0.0 0.05 13.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|312137192|ref|YP_004004529.1| - 2.1e-06 27.6 0.0 0.062 13.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|312137192|ref|YP_004004529.1| - 3.6e-06 26.5 2.8 0.3 10.4 0.0 3.8 3 1 1 4 4 3 2 KaiC AAA_3 PF07726.11 gi|312137192|ref|YP_004004529.1| - 4.1e-06 26.7 0.0 0.056 13.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|312137192|ref|YP_004004529.1| - 5.8e-06 26.3 0.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|312137192|ref|YP_004004529.1| - 6.2e-06 25.9 0.0 0.12 11.9 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|312137192|ref|YP_004004529.1| - 6.9e-06 25.5 0.1 0.12 11.7 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|312137192|ref|YP_004004529.1| - 7.4e-06 25.3 0.0 0.12 11.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|312137192|ref|YP_004004529.1| - 1.3e-05 25.7 0.0 0.17 12.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.6 gi|312137192|ref|YP_004004529.1| - 2.6e-05 23.9 3.0 0.63 9.6 0.3 3.8 3 1 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|312137192|ref|YP_004004529.1| - 4.9e-05 22.7 0.0 0.23 10.6 0.0 3.1 3 0 0 3 3 3 2 NB-ARC domain PhoH PF02562.16 gi|312137192|ref|YP_004004529.1| - 8.1e-05 22.2 0.3 0.51 9.7 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.6 gi|312137192|ref|YP_004004529.1| - 0.00015 21.7 0.0 0.32 10.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|312137192|ref|YP_004004529.1| - 0.00015 20.9 0.0 0.32 10.0 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|312137192|ref|YP_004004529.1| - 0.00019 20.8 0.0 0.2 10.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|312137192|ref|YP_004004529.1| - 0.00027 20.9 1.1 0.76 9.7 0.0 3.2 4 0 0 4 4 2 2 NACHT domain ATPase_2 PF01637.18 gi|312137192|ref|YP_004004529.1| - 0.00043 20.3 0.1 3.1 7.6 0.0 3.4 2 2 0 3 3 3 2 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|312137192|ref|YP_004004529.1| - 0.00052 19.8 0.3 0.74 9.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|312137192|ref|YP_004004529.1| - 0.0008 19.2 0.0 1.1 9.0 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.6 gi|312137192|ref|YP_004004529.1| - 0.0013 18.9 0.0 1.9 8.6 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain Vps4_C PF09336.10 gi|312137192|ref|YP_004004529.1| - 0.0016 18.4 1.2 0.7 9.9 0.0 3.5 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|312137192|ref|YP_004004529.1| - 0.0016 18.8 0.0 2.5 8.5 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|312137192|ref|YP_004004529.1| - 0.0028 18.0 1.5 3 8.2 0.0 3.1 2 1 1 3 3 2 1 AAA domain ResIII PF04851.15 gi|312137192|ref|YP_004004529.1| - 0.0034 17.4 0.0 1.4 8.9 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|312137192|ref|YP_004004529.1| - 0.0062 15.5 0.0 2.7 6.8 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|312137192|ref|YP_004004529.1| - 0.013 15.3 0.2 7.8 6.2 0.0 2.9 3 0 0 3 3 2 0 Cytidylate kinase IPT PF01745.16 gi|312137192|ref|YP_004004529.1| - 0.015 14.7 0.2 1.8 7.9 0.1 2.9 3 0 0 3 3 3 0 Isopentenyl transferase SKI PF01202.22 gi|312137192|ref|YP_004004529.1| - 0.018 15.1 0.1 19 5.4 0.0 3.3 3 0 0 3 3 3 0 Shikimate kinase Rad17 PF03215.15 gi|312137192|ref|YP_004004529.1| - 0.023 14.6 0.0 2.4 8.0 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain CPT PF07931.12 gi|312137192|ref|YP_004004529.1| - 0.045 13.6 0.0 4.8 7.0 0.0 2.8 2 1 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.15 gi|312137192|ref|YP_004004529.1| - 0.057 13.3 6.9 12 5.8 0.0 4.8 4 1 1 5 5 4 0 NTPase AAA_29 PF13555.6 gi|312137192|ref|YP_004004529.1| - 0.065 13.0 0.0 16 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|312137192|ref|YP_004004529.1| - 0.078 12.6 0.1 12 5.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Hydin_ADK PF17213.3 gi|312137192|ref|YP_004004529.1| - 0.17 12.2 0.2 7.1 6.9 0.0 2.5 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Torsin PF06309.11 gi|312137192|ref|YP_004004529.1| - 0.18 11.9 0.0 9.1 6.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Molydop_binding PF01568.21 gi|312137192|ref|YP_004004529.1| - 0.18 11.8 0.0 0.74 9.9 0.0 2.0 2 0 0 2 2 1 0 Molydopterin dinucleotide binding domain DUF3213 PF11491.8 gi|312137192|ref|YP_004004529.1| - 3.3 7.9 5.0 5.9 7.1 0.2 3.2 3 0 0 3 3 2 0 Protein of unknown function (DUF3213) FmdE PF02663.14 gi|312137193|ref|YP_004004530.1| - 0.019 15.0 0.1 0.075 13.1 0.1 1.9 2 0 0 2 2 2 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ETRAMP PF09716.10 gi|312137193|ref|YP_004004530.1| - 0.029 14.4 0.1 3.4 7.8 0.0 2.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Wzz PF02706.15 gi|312137193|ref|YP_004004530.1| - 0.56 10.6 4.4 1.2 9.5 0.1 2.9 2 0 0 2 2 2 0 Chain length determinant protein Chlam_PMP PF02415.17 gi|312137194|ref|YP_004004531.1| - 2.5e-06 27.6 50.3 0.81 10.3 1.0 10.2 10 0 0 10 10 10 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Transglut_C PF00927.22 gi|312137194|ref|YP_004004531.1| - 0.0038 17.3 0.2 0.014 15.5 0.2 2.0 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain Flo11 PF10182.9 gi|312137194|ref|YP_004004531.1| - 0.037 14.2 0.8 0.087 13.0 0.2 1.8 2 0 0 2 2 2 0 Flo11 domain DUF1926 PF09095.11 gi|312137194|ref|YP_004004531.1| - 0.2 11.2 0.0 0.48 10.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1926) Phage_spike_2 PF18781.1 gi|312137194|ref|YP_004004531.1| - 0.22 11.5 6.2 2.8 8.0 0.4 3.4 2 1 1 3 3 3 0 Phage spike trimer Methyltransf_25 PF13649.6 gi|312137195|ref|YP_004004532.1| - 1.2e-15 57.9 0.0 2e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|312137195|ref|YP_004004532.1| - 1.4e-14 54.2 0.1 1.6e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312137195|ref|YP_004004532.1| - 1.2e-11 45.1 0.0 2.2e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|312137195|ref|YP_004004532.1| - 4.6e-10 40.1 0.0 1.1e-09 38.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|312137195|ref|YP_004004532.1| - 1.2e-09 37.6 0.1 2e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|312137195|ref|YP_004004532.1| - 9e-09 35.1 0.0 1.6e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|312137195|ref|YP_004004532.1| - 1.8e-08 34.0 0.1 2.9e-08 33.3 0.1 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|312137195|ref|YP_004004532.1| - 2.1e-08 34.0 0.1 2.1e-08 34.0 0.1 1.6 2 0 0 2 2 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|312137195|ref|YP_004004532.1| - 9.4e-08 31.8 0.3 9.4e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|312137195|ref|YP_004004532.1| - 9.7e-08 32.0 0.0 1.1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|312137195|ref|YP_004004532.1| - 2.9e-07 30.1 0.0 5.4e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|312137195|ref|YP_004004532.1| - 7e-07 29.2 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|312137195|ref|YP_004004532.1| - 2.8e-06 27.1 0.0 5.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 gi|312137195|ref|YP_004004532.1| - 3.5e-06 26.2 0.2 6.9e-06 25.3 0.2 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase GidB PF02527.15 gi|312137195|ref|YP_004004532.1| - 1.1e-05 24.9 1.0 9.4e-05 21.8 0.2 2.0 1 1 1 2 2 2 1 rRNA small subunit methyltransferase G Met_10 PF02475.16 gi|312137195|ref|YP_004004532.1| - 1.4e-05 24.9 0.2 1.9e-05 24.5 0.2 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|312137195|ref|YP_004004532.1| - 2.6e-05 24.2 1.4 3.2e-05 23.9 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|312137195|ref|YP_004004532.1| - 5.6e-05 22.6 0.1 0.0001 21.8 0.1 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|312137195|ref|YP_004004532.1| - 9.5e-05 21.9 0.5 0.00026 20.5 0.0 1.9 3 0 0 3 3 2 1 Putative methyltransferase DREV PF05219.12 gi|312137195|ref|YP_004004532.1| - 0.00073 18.7 0.0 0.0016 17.6 0.0 1.5 1 0 0 1 1 1 1 DREV methyltransferase Cons_hypoth95 PF03602.15 gi|312137195|ref|YP_004004532.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 FtsJ PF01728.19 gi|312137195|ref|YP_004004532.1| - 0.0014 18.8 0.0 0.002 18.3 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase TRM PF02005.16 gi|312137195|ref|YP_004004532.1| - 0.002 17.4 0.2 0.0028 16.9 0.2 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase NodS PF05401.11 gi|312137195|ref|YP_004004532.1| - 0.005 16.5 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|312137195|ref|YP_004004532.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|312137195|ref|YP_004004532.1| - 0.02 14.3 0.0 0.02 14.3 0.0 2.6 3 0 0 3 3 3 0 C-5 cytosine-specific DNA methylase DUF43 PF01861.16 gi|312137195|ref|YP_004004532.1| - 0.021 14.1 1.2 0.025 13.8 0.1 1.7 2 0 0 2 2 2 0 Branched-chain polyamine synthase A C-terminal domain DUF4252 PF14060.6 gi|312137195|ref|YP_004004532.1| - 0.026 14.5 1.7 0.026 14.5 1.7 2.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4252) MetW PF07021.12 gi|312137195|ref|YP_004004532.1| - 0.026 14.1 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TRM13 PF05206.14 gi|312137195|ref|YP_004004532.1| - 0.028 14.0 0.1 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase TRM13 UPF0020 PF01170.18 gi|312137195|ref|YP_004004532.1| - 0.056 13.1 0.8 0.34 10.6 0.8 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF938 PF06080.12 gi|312137195|ref|YP_004004532.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fer4 PF00037.27 gi|312137196|ref|YP_004004533.1| - 1.4e-11 43.7 17.0 1.2e-07 31.2 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137196|ref|YP_004004533.1| - 1.7e-08 34.4 16.1 2.1e-05 24.6 3.4 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|312137196|ref|YP_004004533.1| - 5e-08 32.9 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Fer4_7 PF12838.7 gi|312137196|ref|YP_004004533.1| - 5.9e-07 30.0 16.4 0.001 19.6 1.9 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137196|ref|YP_004004533.1| - 7.9e-07 29.2 15.8 1.1e-06 28.7 14.5 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain HTH_23 PF13384.6 gi|312137196|ref|YP_004004533.1| - 1.6e-06 27.8 0.0 2.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fer4_6 PF12837.7 gi|312137196|ref|YP_004004533.1| - 8.7e-06 25.6 16.1 0.00078 19.4 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312137196|ref|YP_004004533.1| - 2.6e-05 24.7 12.4 0.00047 20.6 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain HTH_38 PF13936.6 gi|312137196|ref|YP_004004533.1| - 8.3e-05 22.3 0.1 0.00016 21.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_16 PF13484.6 gi|312137196|ref|YP_004004533.1| - 0.0001 23.1 13.7 0.0021 19.0 4.2 2.6 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|312137196|ref|YP_004004533.1| - 0.00013 21.8 13.5 0.0014 18.6 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137196|ref|YP_004004533.1| - 0.00018 21.5 19.3 0.0023 18.0 17.2 3.0 2 1 1 3 3 3 1 4Fe-4S dicluster domain HTH_19 PF12844.7 gi|312137196|ref|YP_004004533.1| - 0.00034 20.6 0.1 0.00064 19.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|312137196|ref|YP_004004533.1| - 0.00088 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0175 PF03683.13 gi|312137196|ref|YP_004004533.1| - 0.00093 18.9 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_31 PF13560.6 gi|312137196|ref|YP_004004533.1| - 0.00096 19.5 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|312137196|ref|YP_004004533.1| - 0.0011 19.0 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|312137196|ref|YP_004004533.1| - 0.0024 17.5 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|312137196|ref|YP_004004533.1| - 0.0038 16.8 0.0 0.0066 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|312137196|ref|YP_004004533.1| - 0.0087 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|312137196|ref|YP_004004533.1| - 0.012 15.7 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.20 gi|312137196|ref|YP_004004533.1| - 0.012 15.4 0.1 0.03 14.2 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fer4_22 PF17179.4 gi|312137196|ref|YP_004004533.1| - 0.014 16.3 17.2 0.19 12.6 4.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain HTH_35 PF13693.6 gi|312137196|ref|YP_004004533.1| - 0.018 15.1 0.1 0.029 14.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|312137196|ref|YP_004004533.1| - 0.018 15.4 0.1 0.038 14.4 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 gi|312137196|ref|YP_004004533.1| - 0.026 14.6 0.1 0.058 13.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HNF-1_N PF04814.13 gi|312137196|ref|YP_004004533.1| - 0.029 15.0 0.1 0.045 14.4 0.1 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_psq PF05225.16 gi|312137196|ref|YP_004004533.1| - 0.03 14.0 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain RepB PF07506.11 gi|312137196|ref|YP_004004533.1| - 0.037 14.1 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_40 PF14493.6 gi|312137196|ref|YP_004004533.1| - 0.042 14.3 0.5 0.2 12.1 0.5 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|312137196|ref|YP_004004533.1| - 0.044 13.5 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4 PF04545.16 gi|312137196|ref|YP_004004533.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|312137196|ref|YP_004004533.1| - 0.068 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Fer4_3 PF12798.7 gi|312137196|ref|YP_004004533.1| - 0.072 14.1 4.3 0.072 14.1 4.3 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain TnsD PF15978.5 gi|312137196|ref|YP_004004533.1| - 0.13 11.3 0.1 0.13 11.3 0.1 1.6 2 1 0 2 2 1 0 Tn7-like transposition protein D Fer4_4 PF12800.7 gi|312137196|ref|YP_004004533.1| - 0.14 12.7 20.7 0.13 12.8 4.3 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|312137196|ref|YP_004004533.1| - 0.4 11.2 13.9 0.62 10.6 4.3 3.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|312137196|ref|YP_004004533.1| - 0.98 9.6 15.2 18 5.5 15.2 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|312137196|ref|YP_004004533.1| - 2.4 8.7 19.5 0.14 12.6 5.2 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain GCM PF03615.15 gi|312137196|ref|YP_004004533.1| - 4.9 7.0 12.5 0.087 12.7 1.9 2.1 1 1 1 2 2 2 0 GCM motif protein Fer4 PF00037.27 gi|312137197|ref|YP_004004534.1| - 2.6e-63 207.5 89.8 1.4e-08 34.1 4.0 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312137197|ref|YP_004004534.1| - 2.6e-43 146.4 98.5 5.6e-11 42.9 9.5 5.5 3 1 3 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137197|ref|YP_004004534.1| - 7.3e-35 117.6 89.9 6.1e-06 26.1 2.6 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137197|ref|YP_004004534.1| - 4.9e-34 116.3 67.0 5.4e-09 36.0 11.9 6.3 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137197|ref|YP_004004534.1| - 3.7e-30 103.8 67.1 1.5e-07 31.5 6.7 6.1 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312137197|ref|YP_004004534.1| - 6e-29 99.9 75.4 5.4e-07 29.6 12.2 7.8 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312137197|ref|YP_004004534.1| - 3e-27 95.3 70.6 5.8e-05 23.9 9.1 8.2 5 3 3 8 8 8 8 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|312137197|ref|YP_004004534.1| - 5e-26 89.2 72.5 0.00035 20.5 0.6 9.0 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137197|ref|YP_004004534.1| - 1.4e-14 54.3 74.1 6.8e-05 23.2 9.1 6.5 2 2 5 7 7 7 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312137197|ref|YP_004004534.1| - 1.6e-10 41.4 76.2 0.0018 18.8 9.5 6.8 3 3 4 7 7 7 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137197|ref|YP_004004534.1| - 2.9e-10 39.8 89.1 0.04 14.4 4.6 8.8 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_13 PF13370.6 gi|312137197|ref|YP_004004534.1| - 2.4e-08 34.4 77.1 0.036 14.6 3.5 8.8 8 1 1 9 9 9 7 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|312137197|ref|YP_004004534.1| - 5.3e-08 33.3 106.2 0.069 14.1 5.6 9.1 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_22 PF17179.4 gi|312137197|ref|YP_004004534.1| - 9.4e-07 29.6 59.2 0.5 11.2 0.4 8.2 7 1 1 8 8 8 7 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|312137197|ref|YP_004004534.1| - 2.3e-06 27.7 51.5 0.087 13.0 1.3 6.5 1 1 6 7 7 7 4 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|312137197|ref|YP_004004534.1| - 6.1 7.7 82.6 0.7 10.7 3.8 10.7 7 5 3 10 10 10 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|312137198|ref|YP_004004535.1| - 9.1e-18 63.3 13.8 5.6e-09 35.4 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137198|ref|YP_004004535.1| - 5.5e-13 48.8 20.8 5.4e-10 39.2 10.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137198|ref|YP_004004535.1| - 5.9e-11 42.4 4.6 9.2e-11 41.8 4.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137198|ref|YP_004004535.1| - 1.1e-10 41.1 14.8 9.6e-06 25.5 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312137198|ref|YP_004004535.1| - 1.9e-10 41.2 8.7 4.2e-10 40.0 8.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312137198|ref|YP_004004535.1| - 9.5e-10 39.3 8.5 0.00016 22.5 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|312137198|ref|YP_004004535.1| - 6.5e-08 32.2 12.9 0.00087 19.2 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137198|ref|YP_004004535.1| - 4.6e-07 29.9 10.8 0.0025 17.9 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137198|ref|YP_004004535.1| - 1.1e-06 29.1 21.9 0.0039 18.0 9.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137198|ref|YP_004004535.1| - 2.4e-06 27.9 9.6 5.6e-06 26.7 9.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137198|ref|YP_004004535.1| - 1.4e-05 25.2 13.6 0.0031 17.9 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|312137198|ref|YP_004004535.1| - 0.0002 21.8 12.8 0.007 16.9 13.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312137198|ref|YP_004004535.1| - 0.0021 18.7 11.9 0.014 16.2 11.9 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|312137198|ref|YP_004004535.1| - 0.0029 18.4 5.9 0.21 12.5 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|312137198|ref|YP_004004535.1| - 0.039 14.5 12.6 1.2 9.7 12.6 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I DUF3954 PF13128.6 gi|312137198|ref|YP_004004535.1| - 0.075 12.8 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3954) Fer4_11 PF13247.6 gi|312137198|ref|YP_004004535.1| - 0.15 12.2 6.0 2.7 8.1 6.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain MTHFR_C PF12225.8 gi|312137198|ref|YP_004004535.1| - 0.81 9.4 9.4 1 9.0 1.2 2.2 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Me-amine-dh_L PF02975.14 gi|312137198|ref|YP_004004535.1| - 0.93 10.0 7.9 4.2 7.9 1.0 2.0 1 1 1 2 2 2 0 Methylamine dehydrogenase, L chain Fer4_18 PF13746.6 gi|312137198|ref|YP_004004535.1| - 7 6.9 12.7 2.5 8.3 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Molydop_binding PF01568.21 gi|312137199|ref|YP_004004536.1| - 2.1e-19 69.6 0.1 2.5e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|312137199|ref|YP_004004536.1| - 5.8e-05 23.2 0.0 8.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF1905 PF08922.11 gi|312137199|ref|YP_004004536.1| - 0.029 14.4 0.1 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) DNA_ligase_OB PF03120.16 gi|312137199|ref|YP_004004536.1| - 0.061 13.2 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain Amidohydro_3 PF07969.11 gi|312137200|ref|YP_004004537.1| - 1.5e-100 337.9 0.0 1.8e-100 337.6 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|312137200|ref|YP_004004537.1| - 6.4e-09 35.6 0.0 1.8e-05 24.2 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family DUF2226 PF09987.9 gi|312137200|ref|YP_004004537.1| - 0.21 10.9 1.6 0.25 10.6 0.2 1.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2226) GXGXG PF01493.19 gi|312137201|ref|YP_004004538.1| - 9.7e-13 48.1 18.6 9e-10 38.4 14.8 2.8 1 1 1 2 2 2 2 GXGXG motif Molybdopterin PF00384.22 gi|312137202|ref|YP_004004539.1| - 9.8e-15 54.4 0.0 4.3e-14 52.3 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|312137202|ref|YP_004004539.1| - 0.035 13.8 0.0 2.5 7.8 0.0 2.8 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain ABC_tran PF00005.27 gi|312137203|ref|YP_004004540.1| - 1.7e-35 122.5 0.0 3.2e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|312137203|ref|YP_004004540.1| - 7.6e-10 38.9 0.0 1.5e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|312137203|ref|YP_004004540.1| - 1e-05 25.5 2.4 0.045 13.6 0.4 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|312137203|ref|YP_004004540.1| - 3.3e-05 24.0 0.0 6.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|312137203|ref|YP_004004540.1| - 0.00017 21.1 0.3 0.057 12.8 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|312137203|ref|YP_004004540.1| - 0.0039 17.7 0.3 0.0081 16.7 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|312137203|ref|YP_004004540.1| - 0.0054 16.5 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|312137203|ref|YP_004004540.1| - 0.017 15.4 0.2 0.056 13.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|312137203|ref|YP_004004540.1| - 0.023 14.9 0.1 0.38 11.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|312137203|ref|YP_004004540.1| - 0.042 14.3 0.0 1.8 9.0 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|312137203|ref|YP_004004540.1| - 0.059 13.7 0.0 0.16 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|312137203|ref|YP_004004540.1| - 0.074 11.8 0.0 0.43 9.3 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class TOBE_3 PF12857.7 gi|312137203|ref|YP_004004540.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 TOBE-like domain BPD_transp_1 PF00528.22 gi|312137204|ref|YP_004004541.1| - 2.9e-21 76.0 14.1 2.9e-21 76.0 14.1 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|312137204|ref|YP_004004541.1| - 0.31 10.8 1.7 0.75 9.6 0.2 2.2 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family Pex24p PF06398.11 gi|312137204|ref|YP_004004541.1| - 0.37 9.7 6.6 1.4 7.8 6.6 2.1 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin SBP_bac_11 PF13531.6 gi|312137205|ref|YP_004004542.1| - 9.8e-43 146.5 0.0 1.4e-42 146.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|312137205|ref|YP_004004542.1| - 4.8e-20 72.7 3.1 7.4e-20 72.1 3.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|312137205|ref|YP_004004542.1| - 1.2e-08 35.0 0.1 3.7e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 PBP superfamily domain SBP_bac_6 PF13343.6 gi|312137205|ref|YP_004004542.1| - 4.4e-05 23.0 0.0 0.0001 21.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|312137205|ref|YP_004004542.1| - 0.0092 15.4 0.0 0.27 10.5 0.0 2.2 2 0 0 2 2 2 1 LysR substrate binding domain Ubiq-assoc PF09145.10 gi|312137205|ref|YP_004004542.1| - 0.05 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-associated Oxidored_nitro PF00148.19 gi|312137206|ref|YP_004004543.1| - 7.8e-93 311.4 0.0 8.7e-93 311.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase HMGL-like PF00682.19 gi|312137207|ref|YP_004004544.1| - 6.3e-93 311.1 3.2 6.3e-93 311.1 3.2 2.0 3 1 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|312137207|ref|YP_004004544.1| - 6.9e-39 132.8 3.9 1.8e-38 131.5 3.9 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|312137207|ref|YP_004004544.1| - 0.011 15.2 0.0 0.041 13.3 0.0 2.0 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel PHP_C PF13263.6 gi|312137208|ref|YP_004004545.1| - 1.7e-17 62.9 0.0 4.3e-17 61.6 0.0 1.7 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|312137208|ref|YP_004004545.1| - 1.2e-11 45.1 0.0 1.7e-11 44.7 0.0 1.3 1 1 0 1 1 1 1 PHP domain HTH_40 PF14493.6 gi|312137208|ref|YP_004004545.1| - 0.3 11.6 3.0 15 6.1 0.3 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain tRNA-Thr_ED PF08915.11 gi|312137209|ref|YP_004004546.1| - 5.7e-56 188.4 0.3 1.4e-55 187.1 0.3 1.7 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|312137209|ref|YP_004004546.1| - 4.1e-22 78.1 4.0 1.4e-21 76.4 3.0 2.5 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|312137209|ref|YP_004004546.1| - 2.6e-20 73.1 0.4 9.4e-20 71.3 0.1 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|312137209|ref|YP_004004546.1| - 0.0043 16.6 0.8 0.01 15.4 0.8 1.5 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs Syntaxin-6_N PF09177.11 gi|312137209|ref|YP_004004546.1| - 0.087 13.4 0.1 0.087 13.4 0.1 2.6 3 1 0 3 3 3 0 Syntaxin 6, N-terminal DUF998 PF06197.13 gi|312137210|ref|YP_004004547.1| - 0.78 9.3 7.6 0.045 13.4 2.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF998) VIT1 PF01988.19 gi|312137210|ref|YP_004004547.1| - 0.89 9.4 6.5 1.3 8.8 5.3 1.7 2 0 0 2 2 2 0 VIT family FeoB_N PF02421.18 gi|312137211|ref|YP_004004548.1| - 1.2e-64 216.5 0.8 2.2e-64 215.7 0.8 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|312137211|ref|YP_004004548.1| - 2.6e-50 169.4 9.2 1.9e-33 115.1 2.2 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|312137211|ref|YP_004004548.1| - 1.7e-20 72.5 2.2 1.7e-20 72.5 2.2 4.0 5 0 0 5 5 5 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|312137211|ref|YP_004004548.1| - 5e-19 68.5 0.3 9.8e-19 67.5 0.3 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|312137211|ref|YP_004004548.1| - 1e-14 54.8 1.0 3.6e-14 53.1 0.6 2.0 2 0 0 2 2 2 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|312137211|ref|YP_004004548.1| - 0.00013 21.4 0.1 0.00013 21.4 0.1 1.6 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.27 gi|312137211|ref|YP_004004548.1| - 0.00019 21.1 1.4 0.043 13.3 1.4 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|312137211|ref|YP_004004548.1| - 0.00021 20.8 0.5 0.00048 19.6 0.1 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|312137211|ref|YP_004004548.1| - 0.00057 19.8 1.7 0.084 12.8 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|312137211|ref|YP_004004548.1| - 0.00059 19.3 0.4 0.0011 18.4 0.4 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family Phage_holin_3_3 PF16083.5 gi|312137211|ref|YP_004004548.1| - 0.018 15.2 2.7 6.4 7.0 0.0 3.7 3 0 0 3 3 3 0 LydA holin phage, holin superfamily III Dynamin_N PF00350.23 gi|312137211|ref|YP_004004548.1| - 0.028 14.5 0.5 0.22 11.6 0.1 2.4 1 1 0 2 2 2 0 Dynamin family Poly_export PF02563.16 gi|312137211|ref|YP_004004548.1| - 0.24 11.7 0.5 21 5.4 0.0 2.7 3 0 0 3 3 2 0 Polysaccharide biosynthesis/export protein DUF2206 PF09971.9 gi|312137211|ref|YP_004004548.1| - 0.72 8.5 6.9 0.59 8.8 0.8 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2206) DUF347 PF03988.12 gi|312137211|ref|YP_004004548.1| - 2.7 8.2 10.5 0.42 10.8 1.7 3.3 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) FeoA PF04023.14 gi|312137212|ref|YP_004004549.1| - 1.1e-15 57.6 0.2 1.2e-15 57.5 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|312137213|ref|YP_004004550.1| - 3.5e-17 62.4 0.0 4.1e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|312137214|ref|YP_004004551.1| - 3.5e-33 113.7 0.2 1.5e-10 41.2 0.0 3.4 3 1 0 3 3 3 3 FeoA domain DUF1967 PF09269.11 gi|312137214|ref|YP_004004551.1| - 0.003 17.5 4.0 3 7.8 0.3 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF1967) MAP7 PF05672.11 gi|312137214|ref|YP_004004551.1| - 0.034 13.9 0.6 0.061 13.0 0.6 1.5 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family DUF4115 PF13464.6 gi|312137214|ref|YP_004004551.1| - 0.076 13.2 0.0 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) Cation_efflux PF01545.21 gi|312137215|ref|YP_004004552.1| - 0.011 15.5 3.6 0.011 15.5 3.6 1.8 1 1 1 2 2 2 0 Cation efflux family DUF2070 PF09843.9 gi|312137215|ref|YP_004004552.1| - 0.085 11.1 4.8 0.1 10.9 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1129 PF06570.11 gi|312137215|ref|YP_004004552.1| - 0.13 11.7 5.1 0.25 10.8 5.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3995 PF13160.6 gi|312137215|ref|YP_004004552.1| - 0.28 11.5 3.7 0.29 11.5 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF373 PF04123.13 gi|312137215|ref|YP_004004552.1| - 0.42 10.0 5.1 0.5 9.8 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3153 PF11353.8 gi|312137215|ref|YP_004004552.1| - 0.42 10.2 1.5 0.63 9.6 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) Polysacc_synt_C PF14667.6 gi|312137215|ref|YP_004004552.1| - 0.46 10.5 13.5 0.94 9.5 13.5 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF3021 PF11457.8 gi|312137215|ref|YP_004004552.1| - 0.78 10.1 8.1 0.53 10.6 4.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3021) Phage_holin_5_2 PF16079.5 gi|312137215|ref|YP_004004552.1| - 0.78 10.1 12.1 0.49 10.8 6.9 2.3 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V PadR PF03551.14 gi|312137216|ref|YP_004004553.1| - 1.8e-17 63.1 0.1 3.9e-17 62.0 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|312137216|ref|YP_004004553.1| - 3.2e-05 24.6 0.3 4.1e-05 24.2 0.3 1.2 1 0 0 1 1 1 1 Replication terminator protein HTH_45 PF14947.6 gi|312137216|ref|YP_004004553.1| - 0.0028 17.6 0.2 0.0053 16.7 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix Ribosomal_S19e PF01090.19 gi|312137216|ref|YP_004004553.1| - 0.0046 16.7 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19e DUF4364 PF14277.6 gi|312137216|ref|YP_004004553.1| - 0.0046 16.7 0.1 0.0082 15.9 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|312137216|ref|YP_004004553.1| - 0.0069 16.5 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|312137216|ref|YP_004004553.1| - 0.012 14.0 0.0 0.012 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Cdc6_C PF09079.11 gi|312137216|ref|YP_004004553.1| - 0.039 13.9 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DUF655 PF04919.12 gi|312137216|ref|YP_004004553.1| - 0.046 13.7 0.0 0.66 9.9 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF655) DUF1495 PF07381.11 gi|312137216|ref|YP_004004553.1| - 0.074 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HxlR PF01638.17 gi|312137216|ref|YP_004004553.1| - 0.078 12.8 0.1 0.11 12.4 0.1 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|312137216|ref|YP_004004553.1| - 0.078 13.5 0.0 0.26 11.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|312137217|ref|YP_004004554.1| - 1.5e-34 119.4 0.0 2.7e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|312137217|ref|YP_004004554.1| - 2.5e-15 57.1 0.8 2.6e-11 43.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|312137217|ref|YP_004004554.1| - 1.2e-07 32.3 2.4 2e-07 31.6 1.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|312137217|ref|YP_004004554.1| - 0.0009 18.7 3.5 0.0083 15.6 0.3 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|312137217|ref|YP_004004554.1| - 0.014 14.8 0.3 0.38 10.1 0.1 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|312137217|ref|YP_004004554.1| - 0.023 15.0 0.7 0.26 11.5 0.5 2.5 1 1 2 3 3 3 0 AAA domain DUF4928 PF16280.5 gi|312137217|ref|YP_004004554.1| - 0.028 13.7 0.1 0.052 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4928) DUF2813 PF11398.8 gi|312137217|ref|YP_004004554.1| - 0.042 13.1 0.0 0.31 10.2 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2813) Rad17 PF03215.15 gi|312137217|ref|YP_004004554.1| - 0.05 13.5 0.6 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|312137217|ref|YP_004004554.1| - 0.053 13.2 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|312137217|ref|YP_004004554.1| - 0.06 13.1 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|312137217|ref|YP_004004554.1| - 0.076 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|312137217|ref|YP_004004554.1| - 0.17 12.2 0.0 1.9 8.8 0.0 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|312137217|ref|YP_004004554.1| - 0.36 11.3 10.2 4.6 7.7 10.2 2.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|312137217|ref|YP_004004554.1| - 0.96 9.9 4.3 2.4 8.6 1.9 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_3 PF12698.7 gi|312137218|ref|YP_004004555.1| - 6.9e-46 156.9 18.1 8.4e-46 156.7 18.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|312137218|ref|YP_004004555.1| - 1.7e-35 122.4 24.1 5.5e-34 117.4 14.5 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|312137218|ref|YP_004004555.1| - 3.6e-18 65.9 10.2 5e-18 65.4 10.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|312137218|ref|YP_004004555.1| - 1.2e-06 28.2 12.4 8.3e-05 22.2 8.9 2.4 2 1 0 2 2 2 2 CcmB protein Band_7 PF01145.25 gi|312137219|ref|YP_004004556.1| - 4.2e-39 134.4 4.9 6.2e-39 133.8 4.9 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|312137219|ref|YP_004004556.1| - 2.2e-06 27.6 1.2 2.6e-05 24.0 1.0 2.4 1 1 1 2 2 2 1 SPFH domain-Band 7 family Glyco_hydro_38 PF18438.1 gi|312137219|ref|YP_004004556.1| - 0.079 13.0 0.2 1.1 9.4 0.2 2.3 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal domain 1 Hexapep PF00132.24 gi|312137220|ref|YP_004004557.1| - 4.2e-20 70.6 16.5 2.9e-08 33.1 3.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|312137220|ref|YP_004004557.1| - 0.00017 21.3 17.3 0.00097 18.8 4.5 3.8 1 1 4 5 5 5 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|312137220|ref|YP_004004557.1| - 0.019 13.9 0.7 0.075 12.0 0.4 1.8 1 1 1 2 2 2 0 L-fucokinase HAS-barrel PF09378.10 gi|312137220|ref|YP_004004557.1| - 0.052 13.7 0.2 0.49 10.6 0.2 2.4 1 1 0 1 1 1 0 HAS barrel domain DUF4954 PF16314.5 gi|312137220|ref|YP_004004557.1| - 5.1 5.1 7.6 0.73 7.9 3.2 1.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4954) ATP-grasp_5 PF13549.6 gi|312137221|ref|YP_004004558.1| - 6.3e-57 192.6 0.0 1.1e-56 191.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|312137221|ref|YP_004004558.1| - 3.6e-50 169.4 0.1 1.2e-48 164.4 0.0 2.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|312137221|ref|YP_004004558.1| - 2.3e-27 95.8 0.0 9.8e-27 93.8 0.0 2.2 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|312137221|ref|YP_004004558.1| - 1.1e-16 61.2 0.8 3e-15 56.7 0.2 2.8 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|312137221|ref|YP_004004558.1| - 0.0026 17.4 0.0 0.0067 16.0 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain Peptidase_C14 PF00656.22 gi|312137222|ref|YP_004004559.1| - 4.4e-30 105.5 0.1 6.3e-30 104.9 0.1 1.2 1 0 0 1 1 1 1 Caspase domain CARDB PF07705.11 gi|312137222|ref|YP_004004559.1| - 6.2e-11 42.5 2.2 7.7e-09 35.7 0.1 3.6 3 0 0 3 3 3 1 CARDB Peptidase_C13 PF01650.18 gi|312137222|ref|YP_004004559.1| - 1.2e-05 25.0 0.7 8.5e-05 22.2 0.5 2.0 1 1 1 2 2 2 1 Peptidase C13 family Orn_Arg_deC_N PF02784.16 gi|312137223|ref|YP_004004560.1| - 1.3e-60 204.9 0.0 1.7e-60 204.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|312137223|ref|YP_004004560.1| - 7.2e-29 99.9 0.0 8.4e-29 99.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|312137223|ref|YP_004004560.1| - 3e-05 23.8 0.0 7.8e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain DAP_epimerase PF01678.19 gi|312137224|ref|YP_004004561.1| - 1.9e-71 237.8 1.4 3.3e-39 133.8 0.1 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|312137224|ref|YP_004004561.1| - 0.00011 21.8 0.0 0.00071 19.1 0.0 1.9 2 0 0 2 2 2 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|312137224|ref|YP_004004561.1| - 0.0024 17.0 0.1 0.011 14.8 0.0 1.8 2 0 0 2 2 2 1 Proline racemase Draxin PF15550.6 gi|312137224|ref|YP_004004561.1| - 0.12 12.3 0.1 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 Draxin SRP54 PF00448.22 gi|312137225|ref|YP_004004562.1| - 1.5e-75 253.1 0.0 3.1e-75 252.1 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|312137225|ref|YP_004004562.1| - 4.5e-30 104.2 0.7 5.8e-29 100.6 0.3 2.7 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|312137225|ref|YP_004004562.1| - 5.8e-20 71.3 3.1 5.8e-20 71.3 3.1 2.6 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|312137225|ref|YP_004004562.1| - 2e-07 31.1 0.0 1.2e-06 28.6 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|312137225|ref|YP_004004562.1| - 2e-05 24.3 1.0 0.00045 19.9 1.0 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 gi|312137225|ref|YP_004004562.1| - 3.2e-05 24.4 0.7 0.00051 20.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|312137225|ref|YP_004004562.1| - 9.1e-05 22.5 0.3 0.00024 21.1 0.3 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_33 PF13671.6 gi|312137225|ref|YP_004004562.1| - 9.3e-05 22.6 0.0 0.0003 20.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|312137225|ref|YP_004004562.1| - 0.0003 20.9 0.1 0.00099 19.2 0.1 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|312137225|ref|YP_004004562.1| - 0.00035 20.8 0.0 0.0049 17.1 0.0 2.4 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|312137225|ref|YP_004004562.1| - 0.00043 19.6 0.0 0.0011 18.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin G-alpha PF00503.20 gi|312137225|ref|YP_004004562.1| - 0.00045 19.5 0.0 0.0009 18.5 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit ATP_bind_1 PF03029.17 gi|312137225|ref|YP_004004562.1| - 0.00064 19.6 0.1 0.0037 17.1 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|312137225|ref|YP_004004562.1| - 0.0014 18.2 0.2 0.0042 16.6 0.2 1.8 1 0 0 1 1 1 1 ADP-ribosylation factor family APS_kinase PF01583.20 gi|312137225|ref|YP_004004562.1| - 0.0034 17.3 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase SRPRB PF09439.10 gi|312137225|ref|YP_004004562.1| - 0.0035 16.8 1.9 0.6 9.5 0.0 3.1 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit 6PF2K PF01591.18 gi|312137225|ref|YP_004004562.1| - 0.005 16.2 0.1 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 6-phosphofructo-2-kinase AAA_24 PF13479.6 gi|312137225|ref|YP_004004562.1| - 0.0056 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|312137225|ref|YP_004004562.1| - 0.0059 17.0 0.0 0.013 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|312137225|ref|YP_004004562.1| - 0.0081 16.6 0.4 0.089 13.2 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|312137225|ref|YP_004004562.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|312137225|ref|YP_004004562.1| - 0.016 15.2 0.1 0.21 11.6 0.1 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|312137225|ref|YP_004004562.1| - 0.018 14.5 0.0 0.067 12.6 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MeaB PF03308.16 gi|312137225|ref|YP_004004562.1| - 0.021 13.8 0.0 0.078 11.9 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|312137225|ref|YP_004004562.1| - 0.024 14.9 0.0 0.079 13.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain SWI2_SNF2 PF18766.1 gi|312137225|ref|YP_004004562.1| - 0.027 14.1 0.1 0.12 12.1 0.0 2.0 1 1 0 2 2 2 0 SWI2/SNF2 ATPase PduV-EutP PF10662.9 gi|312137225|ref|YP_004004562.1| - 0.029 14.1 0.0 5.2 6.8 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|312137225|ref|YP_004004562.1| - 0.032 13.8 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Thymidylate_kin PF02223.17 gi|312137225|ref|YP_004004562.1| - 0.034 13.8 0.7 0.1 12.3 0.0 2.2 2 0 0 2 2 1 0 Thymidylate kinase AAA_19 PF13245.6 gi|312137225|ref|YP_004004562.1| - 0.035 14.4 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|312137225|ref|YP_004004562.1| - 0.079 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|312137225|ref|YP_004004562.1| - 0.11 13.1 0.1 0.33 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|312137225|ref|YP_004004562.1| - 0.13 11.7 0.7 0.46 9.9 0.0 2.2 3 0 0 3 3 2 0 Poxvirus A32 protein DUF1611 PF07755.11 gi|312137225|ref|YP_004004562.1| - 0.14 11.5 0.0 0.45 9.8 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain XRN_M PF17846.1 gi|312137225|ref|YP_004004562.1| - 0.16 10.9 3.0 0.6 9.0 0.2 2.7 2 1 1 3 3 3 0 Xrn1 helical domain AAA_31 PF13614.6 gi|312137225|ref|YP_004004562.1| - 0.24 11.3 2.5 2.5 8.0 0.1 2.9 2 1 1 3 3 3 0 AAA domain Efg1 PF10153.9 gi|312137225|ref|YP_004004562.1| - 5.8 7.3 7.2 4 7.8 0.5 3.6 2 1 1 3 3 3 0 rRNA-processing protein Efg1 THUMP PF02926.17 gi|312137226|ref|YP_004004563.1| - 7.7e-14 52.0 2.6 7.7e-14 52.0 2.6 2.4 2 0 0 2 2 2 1 THUMP domain DUF2703 PF10865.8 gi|312137226|ref|YP_004004563.1| - 0.13 12.5 0.6 19 5.5 0.0 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF2703) DUF836 PF05768.14 gi|312137226|ref|YP_004004563.1| - 0.19 12.2 4.1 2.2 8.7 0.6 2.9 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) zf-C4_ClpX PF06689.13 gi|312137226|ref|YP_004004563.1| - 0.41 10.6 4.0 3.2 7.7 0.5 3.4 3 0 0 3 3 3 0 ClpX C4-type zinc finger Ribosomal_L21e PF01157.18 gi|312137227|ref|YP_004004564.1| - 1.9e-35 120.8 5.1 2.1e-35 120.6 5.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Lar_N PF09861.9 gi|312137227|ref|YP_004004564.1| - 0.049 12.8 0.1 0.056 12.6 0.1 1.1 1 0 0 1 1 1 0 Lactate racemase N-terminal domain RNA_pol_Rpb4 PF03874.16 gi|312137228|ref|YP_004004565.1| - 2.5e-07 31.0 2.0 3e-07 30.8 2.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|312137229|ref|YP_004004566.1| - 1.4e-73 246.7 0.5 1.6e-73 246.5 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|312137229|ref|YP_004004566.1| - 4.2e-05 23.7 0.0 0.00039 20.6 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|312137229|ref|YP_004004566.1| - 7.3e-05 22.9 0.0 0.00085 19.5 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|312137230|ref|YP_004004567.1| - 7.9e-58 195.6 4.3 9e-58 195.4 4.3 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|312137230|ref|YP_004004567.1| - 5.5e-08 33.4 0.0 1.3e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|312137230|ref|YP_004004567.1| - 7.3e-08 32.4 0.2 1.3e-07 31.6 0.2 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|312137230|ref|YP_004004567.1| - 1.6e-07 31.0 1.1 1.8e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|312137230|ref|YP_004004567.1| - 2.4e-07 30.7 0.1 6.2e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|312137230|ref|YP_004004567.1| - 2.1e-06 27.6 0.0 3.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|312137230|ref|YP_004004567.1| - 1.2e-05 25.0 0.0 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|312137230|ref|YP_004004567.1| - 1.5e-05 25.6 0.0 3.1e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|312137230|ref|YP_004004567.1| - 2.3e-05 24.3 0.0 3.6e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|312137230|ref|YP_004004567.1| - 4.1e-05 23.0 0.2 8.7e-05 21.9 0.2 1.6 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G tRNA_U5-meth_tr PF05958.11 gi|312137230|ref|YP_004004567.1| - 0.00013 21.1 0.1 0.00027 20.1 0.1 1.5 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.15 gi|312137230|ref|YP_004004567.1| - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|312137230|ref|YP_004004567.1| - 0.0039 16.6 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_28 PF02636.17 gi|312137230|ref|YP_004004567.1| - 0.0059 16.3 0.1 1.8 8.1 0.0 2.1 2 0 0 2 2 2 2 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltr_RsmB-F PF01189.17 gi|312137230|ref|YP_004004567.1| - 0.009 15.7 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DREV PF05219.12 gi|312137230|ref|YP_004004567.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase UPF0020 PF01170.18 gi|312137230|ref|YP_004004567.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Spermine_synth PF01564.17 gi|312137230|ref|YP_004004567.1| - 0.027 13.9 0.2 0.048 13.1 0.2 1.4 1 0 0 1 1 1 0 Spermine/spermidine synthase domain PrmA PF06325.13 gi|312137230|ref|YP_004004567.1| - 0.056 12.8 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|312137230|ref|YP_004004567.1| - 0.066 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|312137230|ref|YP_004004567.1| - 0.082 12.4 0.0 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 Histone methylation protein DOT1 PRMT5 PF05185.16 gi|312137230|ref|YP_004004567.1| - 0.1 12.4 0.8 0.2 11.5 0.1 1.7 2 0 0 2 2 2 0 PRMT5 arginine-N-methyltransferase Methyltransf_12 PF08242.12 gi|312137230|ref|YP_004004567.1| - 0.17 12.6 0.0 0.45 11.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|312137231|ref|YP_004004568.1| - 2e-19 69.8 0.0 2.8e-16 59.5 0.0 2.0 2 0 0 2 2 2 2 Methyltransferase small domain PrmA PF06325.13 gi|312137231|ref|YP_004004568.1| - 3.9e-12 46.2 0.1 1.1e-11 44.7 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|312137231|ref|YP_004004568.1| - 7.9e-12 45.2 0.1 1e-11 44.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312137231|ref|YP_004004568.1| - 1.4e-08 35.3 0.0 2.4e-07 31.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312137231|ref|YP_004004568.1| - 8.5e-08 32.7 0.0 1.9e-05 25.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|312137231|ref|YP_004004568.1| - 5.1e-06 26.4 0.1 6.6e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|312137231|ref|YP_004004568.1| - 2.5e-05 24.3 0.1 5.9e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|312137231|ref|YP_004004568.1| - 2.7e-05 24.9 0.0 0.0019 18.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|312137231|ref|YP_004004568.1| - 3.8e-05 23.6 0.0 0.00011 22.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|312137231|ref|YP_004004568.1| - 0.00013 21.7 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|312137231|ref|YP_004004568.1| - 0.00033 19.8 0.4 0.00057 19.0 0.2 1.4 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase TRM PF02005.16 gi|312137231|ref|YP_004004568.1| - 0.00035 19.9 0.0 0.00055 19.2 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|312137231|ref|YP_004004568.1| - 0.0005 19.8 0.0 0.0015 18.2 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|312137231|ref|YP_004004568.1| - 0.001 18.9 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|312137231|ref|YP_004004568.1| - 0.0011 18.5 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|312137231|ref|YP_004004568.1| - 0.0033 16.8 0.1 0.005 16.3 0.1 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|312137231|ref|YP_004004568.1| - 0.0054 16.1 0.0 0.033 13.5 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|312137231|ref|YP_004004568.1| - 0.0073 15.6 0.0 1 8.6 0.0 2.1 2 0 0 2 2 2 1 O-methyltransferase domain RrnaAD PF00398.20 gi|312137231|ref|YP_004004568.1| - 0.0078 15.3 0.1 0.016 14.3 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|312137231|ref|YP_004004568.1| - 0.012 14.9 0.0 0.038 13.3 0.0 1.7 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF3419 PF11899.8 gi|312137231|ref|YP_004004568.1| - 0.014 14.6 0.1 0.77 8.9 0.0 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF3419) Methyltransf_4 PF02390.17 gi|312137231|ref|YP_004004568.1| - 0.017 14.6 0.2 0.2 11.1 0.1 2.0 2 0 0 2 2 2 0 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|312137231|ref|YP_004004568.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_10 PF05971.12 gi|312137231|ref|YP_004004568.1| - 0.033 13.5 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase rRNA_methylase PF06962.12 gi|312137231|ref|YP_004004568.1| - 0.071 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative rRNA methylase DUF43 PF01861.16 gi|312137231|ref|YP_004004568.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Pribosyltran PF00156.27 gi|312137232|ref|YP_004004569.1| - 1.1e-17 64.0 2.2 1.5e-17 63.5 2.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|312137232|ref|YP_004004569.1| - 8e-05 22.2 0.2 0.00012 21.6 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|312137232|ref|YP_004004569.1| - 0.00018 21.0 0.2 0.00026 20.5 0.2 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Diphthamide_syn PF01866.17 gi|312137233|ref|YP_004004570.1| - 2.8e-90 302.8 0.0 3.6e-90 302.5 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein F420_ligase PF01996.16 gi|312137233|ref|YP_004004570.1| - 0.13 11.6 0.3 0.29 10.4 0.1 1.8 2 1 0 2 2 2 0 F420-0:Gamma-glutamyl ligase ECR1_N PF14382.6 gi|312137234|ref|YP_004004571.1| - 7.4e-09 35.3 0.0 1.4e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region C1_1 PF00130.22 gi|312137234|ref|YP_004004571.1| - 0.11 12.4 0.6 0.18 11.7 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.6 gi|312137234|ref|YP_004004571.1| - 0.2 11.0 1.2 0.36 10.2 1.2 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DNA_RNApol_7kD PF03604.13 gi|312137234|ref|YP_004004571.1| - 0.47 10.2 2.9 0.9 9.3 2.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|312137234|ref|YP_004004571.1| - 2.1 8.4 5.9 2.7 8.0 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_L_2 PF13656.6 gi|312137235|ref|YP_004004572.1| - 2.7e-19 68.7 0.0 4.1e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|312137235|ref|YP_004004572.1| - 6.6e-05 22.3 0.0 0.00033 20.0 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF99 PF01949.16 gi|312137236|ref|YP_004004573.1| - 1e-62 210.8 0.0 1.2e-62 210.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Latarcin PF10279.9 gi|312137236|ref|YP_004004573.1| - 0.0094 16.3 0.2 0.035 14.5 0.2 2.0 1 1 0 1 1 1 1 Latarcin precursor NUDIX PF00293.28 gi|312137237|ref|YP_004004574.1| - 1.2e-25 90.0 0.0 1.4e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|312137237|ref|YP_004004574.1| - 2.4e-06 27.2 0.0 0.00014 21.4 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4916) Cadherin_3 PF16184.5 gi|312137237|ref|YP_004004574.1| - 0.06 13.4 0.0 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Cadherin-like TFIIS_C PF01096.18 gi|312137238|ref|YP_004004575.1| - 1.1e-18 66.7 8.2 1.1e-18 66.7 8.2 3.4 4 0 0 4 4 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|312137238|ref|YP_004004575.1| - 2.3e-08 33.8 20.3 5.5e-08 32.6 3.3 3.2 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|312137238|ref|YP_004004575.1| - 1.2e-05 25.2 11.2 0.0017 18.3 3.0 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|312137238|ref|YP_004004575.1| - 0.00068 19.5 10.8 0.12 12.3 0.6 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|312137238|ref|YP_004004575.1| - 0.002 17.8 0.4 0.002 17.8 0.4 2.8 2 1 0 2 2 2 1 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|312137238|ref|YP_004004575.1| - 0.0034 16.7 15.0 0.021 14.2 1.9 3.2 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|312137238|ref|YP_004004575.1| - 0.013 15.5 10.9 0.053 13.6 0.7 2.8 2 1 1 3 3 3 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.13 gi|312137238|ref|YP_004004575.1| - 0.014 15.1 8.3 0.38 10.5 2.0 3.1 2 2 0 2 2 2 0 InsA N-terminal domain Lar_restr_allev PF14354.6 gi|312137238|ref|YP_004004575.1| - 0.015 15.7 8.1 0.048 14.0 0.7 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|312137238|ref|YP_004004575.1| - 0.018 15.2 9.5 2.7 8.2 0.1 4.1 4 0 0 4 4 4 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|312137238|ref|YP_004004575.1| - 0.018 14.8 16.3 2.3 8.1 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain FdhE PF04216.12 gi|312137238|ref|YP_004004575.1| - 0.048 13.5 0.9 0.048 13.5 0.9 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DUF2387 PF09526.10 gi|312137238|ref|YP_004004575.1| - 0.081 13.1 12.1 0.93 9.7 2.7 2.7 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zinc-ribbons_6 PF07191.12 gi|312137238|ref|YP_004004575.1| - 0.085 12.9 0.7 0.085 12.9 0.7 2.7 2 1 1 3 3 3 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.12 gi|312137238|ref|YP_004004575.1| - 0.091 12.7 6.7 0.64 10.0 0.2 3.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|312137238|ref|YP_004004575.1| - 0.1 12.6 10.3 0.35 10.9 4.9 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|312137238|ref|YP_004004575.1| - 0.17 11.9 18.6 0.86 9.6 0.7 4.2 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|312137238|ref|YP_004004575.1| - 0.18 11.4 11.5 0.32 10.6 0.8 3.1 2 2 0 2 2 2 0 TFIIB zinc-binding VP_N-CPKC PF11475.8 gi|312137238|ref|YP_004004575.1| - 0.2 11.6 8.6 0.95 9.4 0.1 3.2 3 0 0 3 3 3 0 Virion protein N terminal domain CxC4 PF18717.1 gi|312137238|ref|YP_004004575.1| - 0.29 11.0 7.3 0.23 11.3 2.4 2.3 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Nudix_N_2 PF14803.6 gi|312137238|ref|YP_004004575.1| - 0.49 10.4 10.2 3.2 7.7 2.2 3.6 3 1 0 3 3 3 0 Nudix N-terminal HscB_4_cys PF18256.1 gi|312137238|ref|YP_004004575.1| - 0.54 10.1 0.2 0.54 10.1 0.2 3.5 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif zf-ISL3 PF14690.6 gi|312137238|ref|YP_004004575.1| - 0.7 10.6 10.2 11 6.8 0.1 3.9 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.19 gi|312137238|ref|YP_004004575.1| - 1.2 8.9 19.3 0.4 10.5 4.0 3.5 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Opy2 PF09463.10 gi|312137238|ref|YP_004004575.1| - 2.1 8.7 9.9 2.6 8.4 0.1 3.3 3 1 0 3 3 3 0 Opy2 protein zf-TFIIB PF13453.6 gi|312137238|ref|YP_004004575.1| - 3 7.3 14.6 0.47 9.8 2.3 3.3 2 2 1 3 3 3 0 Transcription factor zinc-finger PADR1 PF08063.12 gi|312137238|ref|YP_004004575.1| - 3.4 7.5 12.0 9.7 6.1 0.1 3.5 3 1 0 3 3 3 0 PADR1 (NUC008) domain zf-LITAF-like PF10601.9 gi|312137238|ref|YP_004004575.1| - 4.5 7.6 8.9 13 6.1 0.0 3.7 3 1 1 4 4 4 0 LITAF-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|312137238|ref|YP_004004575.1| - 4.7 7.0 11.4 0.52 10.0 1.3 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit SPT_ssu-like PF11779.8 gi|312137239|ref|YP_004004576.1| - 0.033 13.8 0.5 0.066 12.8 0.2 1.7 1 1 1 2 2 2 0 Small subunit of serine palmitoyltransferase-like SieB PF14163.6 gi|312137239|ref|YP_004004576.1| - 0.035 13.6 0.1 0.058 12.9 0.0 1.4 1 1 0 1 1 1 0 Super-infection exclusion protein B PCNA_N PF00705.18 gi|312137240|ref|YP_004004577.1| - 7.4e-20 71.0 2.2 1.1e-19 70.4 1.4 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|312137240|ref|YP_004004577.1| - 1e-08 35.0 0.1 1.1e-08 34.9 0.1 1.1 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|312137240|ref|YP_004004577.1| - 2e-07 30.4 0.4 0.0012 17.9 0.0 2.3 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|312137240|ref|YP_004004577.1| - 6.5e-06 26.3 0.1 0.00054 20.1 0.0 2.9 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta PF00712.19 gi|312137240|ref|YP_004004577.1| - 0.029 14.5 6.2 1.3 9.2 0.1 2.5 1 1 2 3 3 3 0 DNA polymerase III beta subunit, N-terminal domain Sld5 PF05916.11 gi|312137241|ref|YP_004004578.1| - 0.024 15.1 1.0 0.039 14.4 1.0 1.3 1 0 0 1 1 1 0 GINS complex protein DUF2856 PF11043.8 gi|312137241|ref|YP_004004578.1| - 0.13 12.4 2.4 0.096 12.8 0.4 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2856) MSA-2c PF12238.8 gi|312137241|ref|YP_004004578.1| - 0.52 10.3 4.3 0.68 9.9 4.3 1.1 1 0 0 1 1 1 0 Merozoite surface antigen 2c Ribosomal_L44 PF00935.19 gi|312137242|ref|YP_004004579.1| - 2.3e-25 88.9 5.1 2.9e-25 88.5 5.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|312137242|ref|YP_004004579.1| - 5.9e-05 23.4 4.5 0.00045 20.6 2.0 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 zinc_ribbon_2 PF13240.6 gi|312137242|ref|YP_004004579.1| - 0.0033 17.1 3.7 0.71 9.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain RNHCP PF12647.7 gi|312137242|ref|YP_004004579.1| - 0.019 15.0 0.1 0.73 9.8 0.0 2.1 2 0 0 2 2 2 0 RNHCP domain Ribosomal_S14 PF00253.21 gi|312137242|ref|YP_004004579.1| - 0.026 14.3 0.4 0.026 14.3 0.4 1.9 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e Zn-ribbon_8 PF09723.10 gi|312137242|ref|YP_004004579.1| - 0.053 13.7 2.4 1.3 9.2 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|312137242|ref|YP_004004579.1| - 0.059 13.8 5.2 3.5 8.2 0.5 2.4 2 0 0 2 2 2 0 Zinc-finger double domain PyrI_C PF02748.15 gi|312137242|ref|YP_004004579.1| - 0.072 13.0 1.8 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Zn_Tnp_IS91 PF14319.6 gi|312137242|ref|YP_004004579.1| - 0.12 12.4 2.8 1.1 9.4 0.4 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_10 PF10058.9 gi|312137242|ref|YP_004004579.1| - 0.14 11.9 1.0 3.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Mss51 PF13824.6 gi|312137242|ref|YP_004004579.1| - 0.19 11.9 2.5 0.46 10.6 2.5 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_jaz PF12171.8 gi|312137242|ref|YP_004004579.1| - 0.21 11.9 3.3 3.4 8.1 0.4 2.4 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding DZR PF12773.7 gi|312137242|ref|YP_004004579.1| - 0.32 11.1 3.5 1.3 9.1 3.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|312137242|ref|YP_004004579.1| - 0.42 10.6 2.1 1.7 8.7 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|312137242|ref|YP_004004579.1| - 0.69 10.5 5.8 4.3 8.0 0.5 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.7 gi|312137242|ref|YP_004004579.1| - 1.1 9.3 7.7 4.3 7.4 0.2 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|312137243|ref|YP_004004580.1| - 1.8e-24 85.2 1.8 1.9e-24 85.1 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|312137243|ref|YP_004004580.1| - 0.00033 20.1 0.4 0.00041 19.8 0.4 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|312137243|ref|YP_004004580.1| - 0.0039 17.1 0.1 0.0048 16.8 0.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|312137243|ref|YP_004004580.1| - 0.019 15.0 0.2 0.022 14.8 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-BED PF02892.15 gi|312137243|ref|YP_004004580.1| - 0.062 13.3 1.2 0.66 10.1 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger DUF951 PF06107.11 gi|312137243|ref|YP_004004580.1| - 0.1 12.5 3.0 0.35 10.8 0.2 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Desulfoferrod_N PF06397.12 gi|312137243|ref|YP_004004580.1| - 0.1 12.2 2.9 0.96 9.1 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TFIIS_C PF01096.18 gi|312137243|ref|YP_004004580.1| - 0.11 12.4 0.4 3.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_ligase_ZBD PF03119.16 gi|312137243|ref|YP_004004580.1| - 0.11 12.5 1.3 0.24 11.5 0.1 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DNA_RNApol_7kD PF03604.13 gi|312137243|ref|YP_004004580.1| - 0.19 11.4 3.4 0.8 9.4 3.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_12 PF18658.1 gi|312137243|ref|YP_004004580.1| - 0.3 10.7 1.5 0.74 9.4 0.2 1.9 1 1 1 2 2 2 0 Zinc-finger C2H2-type zf-C2HC5 PF06221.13 gi|312137243|ref|YP_004004580.1| - 0.35 10.9 3.4 1.1 9.3 0.2 2.0 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2_11 PF16622.5 gi|312137243|ref|YP_004004580.1| - 0.56 10.0 3.1 11 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type EIF_2_alpha PF07541.12 gi|312137244|ref|YP_004004581.1| - 3.2e-25 88.5 1.0 5e-25 87.9 0.4 1.6 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|312137244|ref|YP_004004581.1| - 1.1e-12 48.0 1.1 2.3e-12 47.1 1.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain EXOSC1 PF10447.9 gi|312137244|ref|YP_004004581.1| - 0.0096 16.5 0.9 0.11 13.1 0.2 2.4 2 1 0 2 2 2 1 Exosome component EXOSC1/CSL4 DUF1533 PF07550.11 gi|312137244|ref|YP_004004581.1| - 0.065 13.1 1.6 3.8 7.5 0.6 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1533) DUF4041 PF13250.6 gi|312137244|ref|YP_004004581.1| - 0.072 13.0 0.6 6.6 6.7 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4041) PCB_OB PF17092.5 gi|312137244|ref|YP_004004581.1| - 0.6 10.9 4.1 0.74 10.6 1.0 2.6 2 1 1 3 3 3 0 Penicillin-binding protein OB-like domain RTP PF02334.16 gi|312137244|ref|YP_004004581.1| - 1 10.0 4.7 1.4 9.5 1.5 2.5 2 2 0 2 2 2 0 Replication terminator protein Nop10p PF04135.12 gi|312137245|ref|YP_004004582.1| - 1.1e-24 86.2 3.6 1.2e-24 86.1 3.6 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.11 gi|312137245|ref|YP_004004582.1| - 0.00014 21.9 2.0 0.00017 21.6 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RecR PF02132.15 gi|312137245|ref|YP_004004582.1| - 0.00021 20.8 0.2 0.00025 20.5 0.2 1.1 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|312137245|ref|YP_004004582.1| - 0.024 12.5 0.2 0.024 12.5 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NRDD PF13597.6 gi|312137245|ref|YP_004004582.1| - 0.036 12.8 0.5 0.036 12.8 0.5 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Desulfoferrod_N PF06397.12 gi|312137245|ref|YP_004004582.1| - 0.051 13.2 1.9 7 6.4 0.5 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|312137245|ref|YP_004004582.1| - 0.091 12.3 3.3 2.2 7.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|312137245|ref|YP_004004582.1| - 0.14 12.2 1.1 0.19 11.7 1.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|312137245|ref|YP_004004582.1| - 0.61 9.6 7.8 5.6 6.5 7.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|312137245|ref|YP_004004582.1| - 1.3 8.9 6.4 8.8 6.2 1.4 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PAC2 PF09754.9 gi|312137246|ref|YP_004004583.1| - 2.6e-57 194.3 0.0 3e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Ribosomal_L9_C PF03948.14 gi|312137246|ref|YP_004004583.1| - 0.0056 17.1 0.8 0.027 14.9 0.1 2.4 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain Radical_SAM PF04055.21 gi|312137246|ref|YP_004004583.1| - 0.083 13.3 0.0 0.13 12.7 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily KR PF08659.10 gi|312137246|ref|YP_004004583.1| - 0.15 12.0 0.0 6.7 6.6 0.0 2.3 2 0 0 2 2 2 0 KR domain IMS_HHH PF11798.8 gi|312137246|ref|YP_004004583.1| - 0.22 11.9 1.6 26 5.4 0.0 3.8 3 0 0 3 3 3 0 IMS family HHH motif PHP_C PF13263.6 gi|312137247|ref|YP_004004584.1| - 0.015 15.1 0.0 0.098 12.4 0.0 2.1 2 0 0 2 2 2 0 PHP-associated PHP PF02811.19 gi|312137247|ref|YP_004004584.1| - 0.096 13.0 0.7 0.83 9.9 0.7 2.4 1 1 0 1 1 1 0 PHP domain DUF5484 PF17583.2 gi|312137247|ref|YP_004004584.1| - 0.49 10.1 3.3 2.8 7.7 2.7 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5484) Radical_SAM PF04055.21 gi|312137248|ref|YP_004004585.1| - 6.5e-29 101.4 0.6 2.4e-28 99.6 0.2 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|312137248|ref|YP_004004585.1| - 2e-19 69.8 0.0 4e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Fer4_12 PF13353.6 gi|312137248|ref|YP_004004585.1| - 0.00063 20.0 0.7 0.0023 18.2 0.1 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Glyco_trans_4_2 PF13477.6 gi|312137248|ref|YP_004004585.1| - 0.0094 16.0 0.3 3.1 7.8 0.1 2.6 2 0 0 2 2 2 2 Glycosyl transferase 4-like DNA_photolyase PF00875.18 gi|312137248|ref|YP_004004585.1| - 0.11 12.6 0.2 1.8 8.6 0.0 2.3 2 0 0 2 2 2 0 DNA photolyase Radical_SAM PF04055.21 gi|312137249|ref|YP_004004586.1| - 5.8e-20 72.3 0.1 1.2e-19 71.3 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137249|ref|YP_004004586.1| - 6.1e-10 39.5 0.1 6.1e-10 39.5 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|312137249|ref|YP_004004586.1| - 1.5e-09 38.3 0.2 1.5e-09 38.3 0.2 3.2 3 1 1 4 4 4 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|312137249|ref|YP_004004586.1| - 5.2e-08 33.0 0.1 5.2e-08 33.0 0.1 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain DUF3147 PF11345.8 gi|312137250|ref|YP_004004587.1| - 2.3e-05 24.7 8.7 3.2e-05 24.3 8.7 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3147) GlpM PF06942.12 gi|312137250|ref|YP_004004587.1| - 0.11 13.0 12.1 0.12 12.8 12.1 1.0 1 0 0 1 1 1 0 GlpM protein HKR_ArcB_TM PF18415.1 gi|312137250|ref|YP_004004587.1| - 2.3 9.1 10.4 0.1 13.4 2.4 2.4 2 1 0 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain CDC45 PF02724.14 gi|312137251|ref|YP_004004588.1| - 0.022 13.1 0.0 0.023 13.0 0.0 1.0 1 0 0 1 1 1 0 CDC45-like protein NiFeSe_Hases PF00374.19 gi|312137252|ref|YP_004004589.1| - 1.5e-42 146.2 8.9 5.3e-23 81.7 0.0 5.3 3 2 2 5 5 5 5 Nickel-dependent hydrogenase DUF2891 PF11199.8 gi|312137252|ref|YP_004004589.1| - 0.16 10.9 0.0 0.25 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2891) Complex1_49kDa PF00346.19 gi|312137252|ref|YP_004004589.1| - 0.17 11.0 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HycI PF01750.18 gi|312137253|ref|YP_004004590.1| - 1.9e-32 111.8 0.1 2.3e-32 111.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|312137254|ref|YP_004004591.1| - 2.4e-28 98.6 0.1 2.4e-28 98.6 0.1 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|312137254|ref|YP_004004591.1| - 6.1e-10 38.5 21.8 4.3e-05 23.1 5.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|312137254|ref|YP_004004591.1| - 1.4e-05 25.0 1.5 1.4e-05 25.0 1.5 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137254|ref|YP_004004591.1| - 1.7e-05 24.9 18.3 0.00084 19.4 16.0 3.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137254|ref|YP_004004591.1| - 2.4e-05 24.4 18.3 3.4e-05 23.9 15.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|312137254|ref|YP_004004591.1| - 6.6e-05 23.4 19.5 0.0011 19.5 17.4 2.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312137254|ref|YP_004004591.1| - 0.0015 18.5 3.7 0.0015 18.5 3.7 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137254|ref|YP_004004591.1| - 0.0025 17.9 19.0 0.0058 16.7 16.7 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137254|ref|YP_004004591.1| - 0.012 16.0 2.4 0.012 16.0 2.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|312137254|ref|YP_004004591.1| - 0.026 15.0 0.7 0.026 15.0 0.7 3.6 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I zf-C2H2_11 PF16622.5 gi|312137254|ref|YP_004004591.1| - 0.046 13.5 0.3 0.046 13.5 0.3 2.3 2 0 0 2 2 1 0 zinc-finger C2H2-type Fer4_16 PF13484.6 gi|312137254|ref|YP_004004591.1| - 0.05 14.5 19.1 0.17 12.8 7.8 3.4 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|312137254|ref|YP_004004591.1| - 0.066 13.7 1.1 0.066 13.7 1.1 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|312137255|ref|YP_004004592.1| - 5.7e-42 143.2 0.0 7.9e-42 142.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|312137255|ref|YP_004004592.1| - 1e-28 99.3 0.1 1.6e-28 98.6 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CBS PF00571.28 gi|312137256|ref|YP_004004593.1| - 4.9e-24 84.5 3.1 3.5e-11 43.4 0.3 2.1 2 0 0 2 2 2 2 CBS domain Adenylsucc_synt PF00709.21 gi|312137257|ref|YP_004004594.1| - 3.1e-96 322.9 3.9 5.4e-46 157.4 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Phos_pyr_kin PF08543.12 gi|312137258|ref|YP_004004595.1| - 5.2e-77 258.5 0.2 6.2e-77 258.3 0.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|312137258|ref|YP_004004595.1| - 5.3e-11 42.4 0.1 6.8e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|312137258|ref|YP_004004595.1| - 0.014 14.9 0.3 0.074 12.5 0.1 2.0 1 1 1 2 2 2 0 Carbohydrate kinase DUF4277 PF14104.6 gi|312137258|ref|YP_004004595.1| - 0.015 15.6 0.0 0.037 14.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4277) CofC PF01983.16 gi|312137259|ref|YP_004004596.1| - 3.1e-81 271.7 0.2 3.5e-81 271.5 0.2 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|312137259|ref|YP_004004596.1| - 1.4e-08 35.3 0.0 2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|312137259|ref|YP_004004596.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) DNA_pol_B_3 PF08408.10 gi|312137260|ref|YP_004004597.1| - 0.079 13.2 1.3 0.32 11.2 0.1 2.3 1 1 1 2 2 2 0 DNA polymerase family B viral insert tRNA-synt_2b PF00587.25 gi|312137261|ref|YP_004004598.1| - 8.2e-30 104.1 0.1 1.6e-29 103.1 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|312137261|ref|YP_004004598.1| - 1.8e-20 72.9 1.1 5.8e-20 71.2 1.1 2.0 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|312137261|ref|YP_004004598.1| - 4e-11 43.0 1.3 1.4e-10 41.2 1.2 2.1 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|312137261|ref|YP_004004598.1| - 0.078 13.1 2.5 0.15 12.2 0.3 2.8 2 1 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal PAC2 PF09754.9 gi|312137262|ref|YP_004004599.1| - 4.5e-38 131.4 0.0 5.2e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PepSY PF03413.19 gi|312137263|ref|YP_004004600.1| - 1.1e-05 25.8 0.4 2e-05 25.0 0.4 1.4 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF4834 PF16118.5 gi|312137263|ref|YP_004004600.1| - 0.033 15.1 0.1 0.046 14.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF2188 PF09954.9 gi|312137264|ref|YP_004004601.1| - 0.055 13.6 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) TRM PF02005.16 gi|312137265|ref|YP_004004602.1| - 2.3e-131 438.5 1.3 2.6e-131 438.3 1.3 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|312137265|ref|YP_004004602.1| - 0.00024 20.6 0.2 0.00038 20.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|312137265|ref|YP_004004602.1| - 0.00045 19.8 0.0 0.0007 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF2067 PF09840.9 gi|312137265|ref|YP_004004602.1| - 0.0014 18.2 0.0 0.003 17.1 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Met_10 PF02475.16 gi|312137265|ref|YP_004004602.1| - 0.0018 18.1 0.1 0.0027 17.5 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|312137265|ref|YP_004004602.1| - 0.0022 17.7 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|312137265|ref|YP_004004602.1| - 0.013 15.2 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 Lysine methyltransferase DUF43 PF01861.16 gi|312137265|ref|YP_004004602.1| - 0.016 14.5 0.6 0.048 12.9 0.2 1.8 2 0 0 2 2 2 0 Branched-chain polyamine synthase A C-terminal domain RNA_pol_Rpc34 PF05158.12 gi|312137265|ref|YP_004004602.1| - 0.036 13.5 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit eIF-5_eIF-2B PF01873.17 gi|312137265|ref|YP_004004602.1| - 0.23 11.4 4.2 0.25 11.2 1.4 2.4 2 1 1 3 3 3 0 Domain found in IF2B/IF5 CPBP PF02517.16 gi|312137266|ref|YP_004004603.1| - 6.9e-13 48.8 22.4 3.4e-12 46.6 19.4 3.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease CPT_N PF16484.5 gi|312137266|ref|YP_004004603.1| - 0.091 12.8 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Carnitine O-palmitoyltransferase N-terminus DUF2157 PF09925.9 gi|312137266|ref|YP_004004603.1| - 0.53 10.1 13.5 1.1 9.0 6.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) DegT_DnrJ_EryC1 PF01041.17 gi|312137267|ref|YP_004004604.1| - 2.8e-140 467.7 0.0 3.5e-140 467.4 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|312137267|ref|YP_004004604.1| - 5.8e-11 42.2 0.2 4.3e-10 39.3 0.2 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|312137267|ref|YP_004004604.1| - 8.9e-11 40.9 0.3 1.5e-10 40.2 0.3 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|312137267|ref|YP_004004604.1| - 8.5e-09 35.1 0.0 2.4e-08 33.6 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|312137267|ref|YP_004004604.1| - 2.6e-06 26.7 0.4 4.2e-06 26.0 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V HycI PF01750.18 gi|312137268|ref|YP_004004605.1| - 9.4e-26 90.2 0.1 1.3e-25 89.7 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_31 PF13847.6 gi|312137269|ref|YP_004004606.1| - 2.3e-08 34.0 0.1 3e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312137269|ref|YP_004004606.1| - 1e-07 32.6 0.0 1.5e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|312137269|ref|YP_004004606.1| - 4.4e-07 29.2 0.1 6.3e-07 28.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|312137269|ref|YP_004004606.1| - 7.4e-05 22.3 0.0 9.9e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|312137269|ref|YP_004004606.1| - 0.00024 21.7 0.0 0.00037 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|312137269|ref|YP_004004606.1| - 0.00045 20.0 0.2 0.00079 19.2 0.2 1.4 1 1 0 1 1 1 1 Met-10+ like-protein PRMT5 PF05185.16 gi|312137269|ref|YP_004004606.1| - 0.00053 19.9 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase TehB PF03848.14 gi|312137269|ref|YP_004004606.1| - 0.00076 18.9 0.7 0.00096 18.6 0.7 1.4 1 1 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|312137269|ref|YP_004004606.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|312137269|ref|YP_004004606.1| - 0.024 15.4 0.0 0.052 14.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|312137269|ref|YP_004004606.1| - 0.024 13.7 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DOT1 PF08123.13 gi|312137269|ref|YP_004004606.1| - 0.045 13.3 0.2 0.072 12.6 0.0 1.4 2 0 0 2 2 2 0 Histone methylation protein DOT1 NodS PF05401.11 gi|312137269|ref|YP_004004606.1| - 0.065 12.9 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|312137269|ref|YP_004004606.1| - 0.081 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NikR_C PF08753.11 gi|312137270|ref|YP_004004607.1| - 1.7e-28 98.5 3.9 2.8e-28 97.9 3.9 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|312137270|ref|YP_004004607.1| - 5.6e-08 32.4 1.0 1.8e-07 30.8 0.2 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Mrr_cat PF04471.12 gi|312137270|ref|YP_004004607.1| - 0.032 14.3 0.2 5.6 7.0 0.0 2.8 1 1 2 3 3 3 0 Restriction endonuclease HicB_lk_antitox PF15919.5 gi|312137270|ref|YP_004004607.1| - 0.04 14.0 0.1 0.24 11.5 0.0 2.0 1 1 1 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1815 PF08844.10 gi|312137270|ref|YP_004004607.1| - 0.08 12.9 0.0 0.3 11.1 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1815) Pyr_redox_2 PF07992.14 gi|312137271|ref|YP_004004608.1| - 7.8e-49 166.5 3.3 1.1e-48 166.0 3.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|312137271|ref|YP_004004608.1| - 3e-18 66.1 8.2 8.5e-15 54.8 3.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|312137271|ref|YP_004004608.1| - 1.1e-14 54.8 9.0 1.7e-11 44.5 0.1 3.9 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|312137271|ref|YP_004004608.1| - 1.3e-05 24.1 0.8 0.0002 20.2 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|312137271|ref|YP_004004608.1| - 1.7e-05 24.4 0.0 3.8e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|312137271|ref|YP_004004608.1| - 3e-05 24.1 1.0 0.0067 16.6 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|312137271|ref|YP_004004608.1| - 6.1e-05 22.8 2.4 0.015 14.9 0.0 3.0 3 1 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|312137271|ref|YP_004004608.1| - 0.00015 21.0 15.1 0.11 11.6 5.6 4.2 2 2 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|312137271|ref|YP_004004608.1| - 0.00016 20.9 0.1 0.0045 16.1 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.6 gi|312137271|ref|YP_004004608.1| - 0.0022 17.2 0.0 0.0038 16.4 0.0 1.3 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_dim PF02852.22 gi|312137271|ref|YP_004004608.1| - 0.0025 18.1 0.1 0.013 15.8 0.0 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_3 PF01494.19 gi|312137271|ref|YP_004004608.1| - 0.0069 15.7 0.1 0.032 13.5 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 gi|312137271|ref|YP_004004608.1| - 0.014 15.8 1.7 0.034 14.6 0.1 2.3 2 2 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|312137271|ref|YP_004004608.1| - 0.044 13.0 2.7 0.46 9.7 0.2 3.0 3 0 0 3 3 3 0 Thi4 family Trp_halogenase PF04820.14 gi|312137271|ref|YP_004004608.1| - 0.088 11.6 0.1 0.35 9.7 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Lsm_C PF14894.6 gi|312137271|ref|YP_004004608.1| - 7.1 6.5 7.5 0.75 9.6 0.1 3.1 3 0 0 3 3 3 0 Lsm C-terminal HupF_HypC PF01455.18 gi|312137272|ref|YP_004004609.1| - 2.9e-24 85.0 0.3 3.3e-24 84.8 0.3 1.0 1 0 0 1 1 1 1 HupF/HypC family DUF3334 PF11813.8 gi|312137272|ref|YP_004004609.1| - 0.029 14.1 0.0 0.03 14.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) TFIIE_alpha PF02002.17 gi|312137273|ref|YP_004004610.1| - 1.4e-28 98.8 6.7 2.4e-28 98.0 6.7 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|312137273|ref|YP_004004610.1| - 0.00042 20.1 0.5 0.0013 18.6 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|312137273|ref|YP_004004610.1| - 0.0039 17.5 0.0 0.0086 16.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HypA PF01155.19 gi|312137273|ref|YP_004004610.1| - 0.0042 17.1 0.4 0.0078 16.2 0.4 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_9 PF08221.11 gi|312137273|ref|YP_004004610.1| - 0.0056 16.7 0.0 0.0099 16.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.16 gi|312137273|ref|YP_004004610.1| - 0.0092 16.1 0.0 0.028 14.5 0.0 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Sulfolobus_pRN PF05584.11 gi|312137273|ref|YP_004004610.1| - 0.024 14.7 0.5 0.024 14.7 0.5 1.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein DNA_ligase_ZBD PF03119.16 gi|312137273|ref|YP_004004610.1| - 0.051 13.6 0.1 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|312137273|ref|YP_004004610.1| - 0.08 12.8 0.1 0.08 12.8 0.1 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif zf_C2H2_10 PF18414.1 gi|312137273|ref|YP_004004610.1| - 0.086 12.4 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 C2H2 type zinc-finger TF_Zn_Ribbon PF08271.12 gi|312137273|ref|YP_004004610.1| - 0.095 12.2 4.2 2.1 7.9 4.2 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding CRS1_YhbY PF01985.21 gi|312137273|ref|YP_004004610.1| - 0.31 11.3 2.3 1.1 9.4 2.3 2.0 1 1 0 1 1 1 0 CRS1 / YhbY (CRM) domain HD PF01966.22 gi|312137274|ref|YP_004004611.1| - 4.1e-16 59.3 0.3 5.8e-16 58.8 0.3 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|312137274|ref|YP_004004611.1| - 0.00041 19.9 0.0 0.082 12.4 0.0 2.1 1 1 1 2 2 2 2 HDOD domain Acetate_kinase PF00871.17 gi|312137274|ref|YP_004004611.1| - 0.049 12.3 0.1 0.071 11.8 0.1 1.2 1 0 0 1 1 1 0 Acetokinase family DUF5591 PF17884.1 gi|312137275|ref|YP_004004612.1| - 3.8e-43 147.0 0.1 5.3e-43 146.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|312137275|ref|YP_004004612.1| - 6.7e-12 45.2 0.5 1.2e-11 44.4 0.5 1.5 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|312137275|ref|YP_004004612.1| - 2.2e-09 37.3 0.0 4.5e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase HRXXH PF13933.6 gi|312137275|ref|YP_004004612.1| - 0.1 12.1 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Methyltranf_PUA PF13636.6 gi|312137275|ref|YP_004004612.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA-binding PUA-like domain of methyltransferase RsmF F420_ligase PF01996.16 gi|312137276|ref|YP_004004613.1| - 2e-24 86.3 0.0 3.5e-24 85.5 0.0 1.5 1 1 0 1 1 1 1 F420-0:Gamma-glutamyl ligase FeS PF04060.13 gi|312137277|ref|YP_004004614.1| - 1.7e-11 43.6 0.5 4.1e-11 42.3 0.5 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster Cut8 PF08559.10 gi|312137277|ref|YP_004004614.1| - 0.037 13.7 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 Cut8, nuclear proteasome tether protein cobW PF02492.19 gi|312137278|ref|YP_004004615.1| - 2.8e-15 56.4 0.1 5e-15 55.5 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|312137278|ref|YP_004004615.1| - 5.1e-05 23.0 0.0 0.0003 20.5 0.0 2.4 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|312137278|ref|YP_004004615.1| - 0.00011 21.3 0.1 0.043 12.8 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|312137278|ref|YP_004004615.1| - 0.00053 19.9 0.2 0.0016 18.4 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|312137278|ref|YP_004004615.1| - 0.00082 19.8 0.0 0.0074 16.7 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|312137278|ref|YP_004004615.1| - 0.00092 18.5 0.0 0.0021 17.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|312137278|ref|YP_004004615.1| - 0.0012 18.8 0.2 0.0015 18.6 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|312137278|ref|YP_004004615.1| - 0.0013 19.1 0.0 0.0022 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|312137278|ref|YP_004004615.1| - 0.0062 16.0 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|312137278|ref|YP_004004615.1| - 0.0063 16.3 0.1 0.026 14.3 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DUF2075 PF09848.9 gi|312137278|ref|YP_004004615.1| - 0.0071 15.6 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|312137278|ref|YP_004004615.1| - 0.015 15.1 0.1 0.021 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|312137278|ref|YP_004004615.1| - 0.019 15.3 0.1 0.051 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|312137278|ref|YP_004004615.1| - 0.025 15.1 0.0 0.039 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|312137278|ref|YP_004004615.1| - 0.041 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 gi|312137278|ref|YP_004004615.1| - 0.12 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DnaB_C PF03796.15 gi|312137278|ref|YP_004004615.1| - 0.19 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.27 gi|312137279|ref|YP_004004616.1| - 1.9e-15 57.6 0.3 3.5e-15 56.7 0.1 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|312137279|ref|YP_004004616.1| - 8.5e-10 38.9 1.1 0.00083 19.3 0.0 2.8 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312137279|ref|YP_004004616.1| - 2.7e-05 23.7 2.4 0.00084 18.8 2.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|312137279|ref|YP_004004616.1| - 0.00019 21.7 0.1 0.00069 19.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|312137279|ref|YP_004004616.1| - 0.0019 18.0 0.0 0.005 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|312137279|ref|YP_004004616.1| - 0.0027 17.2 0.4 0.63 9.5 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_16 PF13191.6 gi|312137279|ref|YP_004004616.1| - 0.0054 17.1 0.0 0.01 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|312137279|ref|YP_004004616.1| - 0.008 16.1 2.3 0.008 16.1 2.3 2.4 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea KAP_NTPase PF07693.14 gi|312137279|ref|YP_004004616.1| - 0.011 15.0 1.7 0.12 11.6 1.7 2.1 1 1 0 1 1 1 0 KAP family P-loop domain AAA_29 PF13555.6 gi|312137279|ref|YP_004004616.1| - 0.013 15.3 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|312137279|ref|YP_004004616.1| - 0.013 15.5 0.2 4.6 7.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|312137279|ref|YP_004004616.1| - 0.026 15.1 0.3 0.13 12.8 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|312137279|ref|YP_004004616.1| - 0.029 14.4 0.3 2.1 8.4 0.0 2.5 1 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|312137279|ref|YP_004004616.1| - 0.054 13.0 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Nnf1 PF03980.14 gi|312137279|ref|YP_004004616.1| - 0.083 13.3 2.1 0.11 12.9 0.4 1.9 2 0 0 2 2 2 0 Nnf1 Peptidase_M23 PF01551.22 gi|312137279|ref|YP_004004616.1| - 0.12 12.6 0.2 0.65 10.2 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M23 MMR_HSR1 PF01926.23 gi|312137279|ref|YP_004004616.1| - 0.19 11.8 1.8 0.93 9.6 1.8 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|312137279|ref|YP_004004616.1| - 0.24 11.9 7.3 1.8 9.0 7.3 2.1 1 1 0 1 1 1 0 AAA domain ComA PF02679.15 gi|312137280|ref|YP_004004617.1| - 1.4e-94 316.1 0.2 1.6e-94 315.9 0.2 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) DUF4330 PF14221.6 gi|312137280|ref|YP_004004617.1| - 0.042 14.1 0.0 0.069 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Coat_X PF07552.11 gi|312137280|ref|YP_004004617.1| - 0.18 11.6 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 Spore Coat Protein X and V domain Glyco_hydro_18 PF00704.28 gi|312137281|ref|YP_004004618.1| - 1.7e-10 41.1 4.0 8.9e-10 38.8 3.6 1.9 1 1 1 2 2 2 1 Glycosyl hydrolases family 18 DUF4015 PF13200.6 gi|312137281|ref|YP_004004618.1| - 3.7e-09 36.1 2.7 1e-08 34.6 2.8 1.6 1 1 0 1 1 1 1 Putative glycosyl hydrolase domain GHL10 PF02638.15 gi|312137281|ref|YP_004004618.1| - 9.2e-08 31.5 8.0 0.00039 19.6 0.3 3.1 1 1 2 3 3 3 3 Glycosyl hydrolase-like 10 Polysacc_synt PF01943.17 gi|312137282|ref|YP_004004619.1| - 4.2e-45 154.3 26.4 4.2e-45 154.3 26.4 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|312137282|ref|YP_004004619.1| - 6.4e-33 114.2 16.9 6.4e-33 114.2 16.9 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|312137282|ref|YP_004004619.1| - 6.8e-24 84.3 29.1 1.8e-19 69.9 11.5 4.6 2 2 1 4 4 4 3 MatE Polysacc_synt_C PF14667.6 gi|312137282|ref|YP_004004619.1| - 2.3e-21 76.4 25.1 2.3e-21 76.4 25.1 4.2 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|312137282|ref|YP_004004619.1| - 6.9e-17 61.2 46.1 1e-16 60.6 46.1 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ Peptidase_M24 PF00557.24 gi|312137283|ref|YP_004004620.1| - 2.4e-41 141.7 0.0 3.1e-41 141.4 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Ald_deCOase PF11266.8 gi|312137283|ref|YP_004004620.1| - 0.025 14.3 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Long-chain fatty aldehyde decarbonylase Hjc PF01870.18 gi|312137284|ref|YP_004004621.1| - 1.5e-30 105.0 0.0 2e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Methyltransf_21 PF05050.12 gi|312137285|ref|YP_004004622.1| - 9.8e-17 61.5 0.3 1.7e-16 60.7 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|312137285|ref|YP_004004622.1| - 3e-06 27.1 0.1 5e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|312137285|ref|YP_004004622.1| - 0.0043 16.9 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Phage_sheath_1C PF17482.2 gi|312137285|ref|YP_004004622.1| - 0.0059 16.6 0.1 0.019 14.9 0.1 1.9 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Glycos_transf_1 PF00534.20 gi|312137286|ref|YP_004004623.1| - 8.1e-23 80.8 1.3 9.2e-23 80.6 0.4 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312137286|ref|YP_004004623.1| - 6.6e-14 52.5 0.0 1.2e-13 51.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312137286|ref|YP_004004623.1| - 5.3e-08 33.0 0.0 8.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUSP PF06337.12 gi|312137286|ref|YP_004004623.1| - 0.2 12.3 4.4 0.21 12.2 0.5 2.8 2 2 1 3 3 3 0 DUSP domain NRDD PF13597.6 gi|312137287|ref|YP_004004624.1| - 2e-165 551.8 0.0 2.9e-165 551.3 0.0 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|312137287|ref|YP_004004624.1| - 4.6e-12 46.3 6.9 1.5e-06 28.7 0.4 3.3 1 1 2 3 3 3 2 ATP cone domain DUF4494 PF14902.6 gi|312137287|ref|YP_004004624.1| - 0.073 12.9 1.4 0.15 12.0 1.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4494) Sortase PF04203.13 gi|312137288|ref|YP_004004625.1| - 6.8e-18 64.7 0.0 9.6e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 Sortase domain FUSC_2 PF13515.6 gi|312137288|ref|YP_004004625.1| - 0.091 12.9 3.8 0.14 12.3 0.4 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein-like OST3_OST6 PF04756.13 gi|312137288|ref|YP_004004625.1| - 7.3 5.9 7.9 0.58 9.4 1.7 1.9 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family Glycos_transf_2 PF00535.26 gi|312137289|ref|YP_004004626.1| - 5.7e-30 104.4 0.0 7.1e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137289|ref|YP_004004626.1| - 8.2e-08 32.4 0.0 1.1e-07 32.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|312137289|ref|YP_004004626.1| - 9.4e-05 22.9 0.0 0.00017 22.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|312137289|ref|YP_004004626.1| - 0.0013 18.3 0.1 0.0027 17.2 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 STE PF02200.16 gi|312137289|ref|YP_004004626.1| - 0.014 15.8 0.8 0.06 13.8 0.1 2.3 2 1 0 2 2 2 0 STE like transcription factor DUF3447 PF11929.8 gi|312137289|ref|YP_004004626.1| - 0.027 14.4 0.8 0.83 9.6 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3447) DUF374 PF04028.13 gi|312137289|ref|YP_004004626.1| - 0.028 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF374) LPG_synthase_TM PF03706.13 gi|312137290|ref|YP_004004627.1| - 3e-41 141.9 26.2 4e-41 141.5 26.2 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|312137291|ref|YP_004004628.1| - 2.6e-30 105.5 0.2 4.1e-30 104.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137291|ref|YP_004004628.1| - 4.2e-24 85.7 0.0 5.7e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|312137291|ref|YP_004004628.1| - 1.9e-09 37.7 0.0 2.6e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|312137291|ref|YP_004004628.1| - 1.7e-07 31.0 0.6 3.6e-07 29.9 0.5 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|312137291|ref|YP_004004628.1| - 1.4e-06 28.2 0.7 2.5e-06 27.3 0.3 1.6 1 1 1 2 2 2 1 Glycosyltransferase like family Anp1 PF03452.14 gi|312137291|ref|YP_004004628.1| - 0.00011 21.8 0.3 0.00044 19.8 0.0 2.0 2 1 0 2 2 2 1 Anp1 Glyco_transf_21 PF13506.6 gi|312137291|ref|YP_004004628.1| - 0.0081 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|312137291|ref|YP_004004628.1| - 0.035 14.6 0.0 0.21 12.1 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|312137292|ref|YP_004004629.1| - 2.6e-32 111.7 2.5 5.1e-28 97.7 0.0 3.0 3 1 1 4 4 4 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312137292|ref|YP_004004629.1| - 2.2e-21 76.7 0.0 2.8e-20 73.1 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|312137292|ref|YP_004004629.1| - 1.4e-15 57.5 0.0 3.1e-15 56.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312137292|ref|YP_004004629.1| - 4e-09 36.7 0.0 1.2e-08 35.2 0.0 1.8 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_tranf_2_5 PF13712.6 gi|312137293|ref|YP_004004630.1| - 2.1e-22 79.8 0.1 6.1e-21 75.1 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family Glycos_transf_2 PF00535.26 gi|312137293|ref|YP_004004630.1| - 2.8e-06 27.2 0.9 1.5e-05 24.9 0.5 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 AHH PF14412.6 gi|312137293|ref|YP_004004630.1| - 0.024 14.7 0.1 0.042 13.9 0.1 1.5 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Glyco_tranf_2_3 PF13641.6 gi|312137293|ref|YP_004004630.1| - 0.044 13.7 0.0 1.5 8.6 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|312137294|ref|YP_004004631.1| - 1.9e-16 60.1 0.0 4.3e-16 58.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312137294|ref|YP_004004631.1| - 9.9e-16 58.4 0.0 3.2e-15 56.7 0.0 1.9 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|312137294|ref|YP_004004631.1| - 3.6e-08 33.7 0.0 6.7e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 TyeA PF09059.10 gi|312137294|ref|YP_004004631.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.8 1 0 0 1 1 1 0 TyeA Filamin PF00630.19 gi|312137295|ref|YP_004004632.1| - 0.063 14.1 0.4 0.063 14.1 0.4 6.7 5 2 0 5 5 5 0 Filamin/ABP280 repeat PapC_N PF13954.6 gi|312137295|ref|YP_004004632.1| - 0.12 12.4 0.1 0.12 12.4 0.1 5.1 5 2 1 6 6 6 0 PapC N-terminal domain Glycos_transf_1 PF00534.20 gi|312137296|ref|YP_004004633.1| - 1.9e-33 115.4 0.3 3e-33 114.8 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312137296|ref|YP_004004633.1| - 2e-30 105.9 0.0 3.1e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312137296|ref|YP_004004633.1| - 1.5e-17 64.1 0.2 2.8e-17 63.2 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|312137296|ref|YP_004004633.1| - 1.6e-09 38.4 0.0 2.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|312137296|ref|YP_004004633.1| - 8.9e-06 26.0 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|312137297|ref|YP_004004634.1| - 1.6e-18 67.4 0.0 4.1e-18 66.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|312137297|ref|YP_004004634.1| - 4.3e-18 65.4 0.6 3.3e-17 62.6 0.6 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|312137297|ref|YP_004004634.1| - 4.5e-12 46.3 0.0 8.8e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|312137297|ref|YP_004004634.1| - 0.0021 18.1 3.6 0.0077 16.3 3.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|312137297|ref|YP_004004634.1| - 0.0052 17.1 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|312137297|ref|YP_004004634.1| - 0.011 16.2 0.0 0.024 15.1 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DUF2689 PF10894.8 gi|312137297|ref|YP_004004634.1| - 0.032 14.0 0.1 0.073 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2689) DHFR_1 PF00186.19 gi|312137297|ref|YP_004004634.1| - 0.09 12.5 0.0 6.4 6.5 0.0 2.4 1 1 1 2 2 2 0 Dihydrofolate reductase Epimerase PF01370.21 gi|312137298|ref|YP_004004635.1| - 3.5e-56 190.4 0.0 4.3e-56 190.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|312137298|ref|YP_004004635.1| - 5.2e-52 177.3 0.0 9.7e-52 176.4 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|312137298|ref|YP_004004635.1| - 2.8e-15 56.2 0.0 1.4e-11 44.0 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|312137298|ref|YP_004004635.1| - 9.9e-14 51.0 0.0 1.5e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|312137298|ref|YP_004004635.1| - 4.1e-12 45.8 0.0 7.4e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|312137298|ref|YP_004004635.1| - 2e-07 30.6 0.0 9.1e-07 28.5 0.0 2.0 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|312137298|ref|YP_004004635.1| - 2.6e-06 27.5 0.0 3.9e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|312137298|ref|YP_004004635.1| - 0.00023 20.4 0.0 0.0035 16.6 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|312137298|ref|YP_004004635.1| - 0.00063 19.7 0.1 0.0019 18.1 0.1 1.8 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.18 gi|312137298|ref|YP_004004635.1| - 0.009 16.3 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|312137298|ref|YP_004004635.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.5 1 1 0 1 1 1 0 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|312137298|ref|YP_004004635.1| - 0.024 14.0 0.0 0.055 12.8 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Complex1_51K PF01512.17 gi|312137298|ref|YP_004004635.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit XdhC_C PF13478.6 gi|312137298|ref|YP_004004635.1| - 0.21 12.1 0.0 0.37 11.3 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain Glycos_transf_2 PF00535.26 gi|312137299|ref|YP_004004636.1| - 3.4e-27 95.3 0.0 5e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137299|ref|YP_004004636.1| - 1.8e-05 24.7 0.0 2.6e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|312137299|ref|YP_004004636.1| - 0.00053 19.6 0.0 0.00081 18.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|312137299|ref|YP_004004636.1| - 0.00065 20.2 0.0 0.00098 19.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PGM_PMM_II PF02879.16 gi|312137299|ref|YP_004004636.1| - 0.031 14.9 0.3 0.44 11.2 0.0 2.4 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF973 PF06157.11 gi|312137299|ref|YP_004004636.1| - 0.094 11.8 3.6 0.15 11.1 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF373 PF04123.13 gi|312137299|ref|YP_004004636.1| - 0.13 11.7 7.3 0.028 13.9 1.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Epimerase PF01370.21 gi|312137300|ref|YP_004004637.1| - 1.5e-46 158.8 0.3 2.2e-46 158.3 0.3 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|312137300|ref|YP_004004637.1| - 1.2e-33 116.9 0.8 6.3e-33 114.6 0.8 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|312137300|ref|YP_004004637.1| - 1.6e-17 63.4 0.0 2.4e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|312137300|ref|YP_004004637.1| - 4e-16 59.0 0.0 7.2e-12 45.0 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|312137300|ref|YP_004004637.1| - 1.9e-14 53.5 0.0 2.2e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|312137300|ref|YP_004004637.1| - 4.2e-10 39.3 0.0 5.2e-08 32.4 0.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|312137300|ref|YP_004004637.1| - 0.00018 21.5 0.0 0.00056 19.8 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|312137300|ref|YP_004004637.1| - 0.0034 16.9 0.0 0.061 12.8 0.0 2.4 2 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|312137300|ref|YP_004004637.1| - 0.17 12.0 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.6 gi|312137300|ref|YP_004004637.1| - 0.3 11.1 3.4 1.9 8.4 1.5 2.5 2 1 0 2 2 2 0 Glycosyltransferase Family 4 PMT_2 PF13231.6 gi|312137301|ref|YP_004004638.1| - 2.3e-24 86.4 20.7 2.3e-24 86.4 20.7 3.5 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|312137302|ref|YP_004004639.1| - 4.7e-20 72.4 21.8 4.7e-20 72.4 21.8 4.2 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMBR PF09373.10 gi|312137303|ref|YP_004004640.1| - 2.1e-44 147.6 18.5 3e-08 33.4 0.6 9.1 9 1 0 9 9 9 6 Pseudomurein-binding repeat Transglut_core PF01841.19 gi|312137303|ref|YP_004004640.1| - 3e-26 92.1 6.2 1.1e-25 90.2 2.2 2.7 2 0 0 2 2 2 1 Transglutaminase-like superfamily Glyco_hydro_18 PF00704.28 gi|312137303|ref|YP_004004640.1| - 8.9e-10 38.8 3.0 2.1e-09 37.5 2.2 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 Peptidase_C71 PF12386.8 gi|312137303|ref|YP_004004640.1| - 3.6e-09 36.4 1.6 8.2e-09 35.3 1.6 1.6 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF4015 PF13200.6 gi|312137303|ref|YP_004004640.1| - 2.8e-07 29.9 3.3 8.8e-07 28.3 2.9 1.9 1 1 1 2 2 2 1 Putative glycosyl hydrolase domain GHL10 PF02638.15 gi|312137303|ref|YP_004004640.1| - 1.5e-06 27.6 13.8 0.00081 18.6 0.3 3.3 1 1 2 3 3 3 3 Glycosyl hydrolase-like 10 DUF553 PF04473.12 gi|312137303|ref|YP_004004640.1| - 0.021 14.4 11.8 0.19 11.3 0.1 3.7 3 1 1 4 4 4 0 Transglutaminase-like domain GDPD PF03009.17 gi|312137303|ref|YP_004004640.1| - 0.037 13.7 1.0 0.095 12.4 0.3 1.9 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Transglut_core3 PF13471.6 gi|312137303|ref|YP_004004640.1| - 0.16 11.9 3.1 0.82 9.6 1.4 2.3 2 0 0 2 2 2 0 Transglutaminase-like superfamily Radical_SAM PF04055.21 gi|312137304|ref|YP_004004641.1| - 1.1e-15 58.4 0.1 2.2e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137304|ref|YP_004004641.1| - 2.5e-09 37.6 0.6 2.8e-08 34.1 0.1 2.4 1 1 2 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137304|ref|YP_004004641.1| - 2.4e-07 30.9 0.4 1.1e-06 28.8 0.1 2.2 1 1 0 2 2 2 1 4Fe-4S single cluster domain DUF1566 PF07603.11 gi|312137304|ref|YP_004004641.1| - 0.041 14.3 0.0 0.32 11.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1566) DUF2112 PF09885.9 gi|312137304|ref|YP_004004641.1| - 0.066 13.3 0.5 0.13 12.3 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2112) MFS_1 PF07690.16 gi|312137305|ref|YP_004004642.1| - 6e-54 183.3 33.1 6e-54 183.3 33.1 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|312137305|ref|YP_004004642.1| - 5e-09 35.1 6.1 2.3e-05 23.0 0.8 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector PIN_6 PF17146.4 gi|312137306|ref|YP_004004643.1| - 2.1e-12 47.4 0.7 3.3e-12 46.7 0.7 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease NOB1_Zn_bind PF08772.11 gi|312137306|ref|YP_004004643.1| - 0.00037 20.6 1.7 0.0007 19.7 1.0 1.8 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zf-RING_9 PF13901.6 gi|312137306|ref|YP_004004643.1| - 0.003 17.5 0.4 0.0063 16.5 0.4 1.5 1 1 0 1 1 1 1 Putative zinc-RING and/or ribbon YqaH PF17448.2 gi|312137306|ref|YP_004004643.1| - 0.0063 16.8 0.5 0.011 16.1 0.5 1.3 1 0 0 1 1 1 1 Uncharacterized YqaH-like zf-C2HC5 PF06221.13 gi|312137306|ref|YP_004004643.1| - 0.031 14.3 0.2 0.06 13.3 0.2 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RBD PF02196.15 gi|312137306|ref|YP_004004643.1| - 0.11 12.6 0.3 0.21 11.7 0.3 1.5 1 0 0 1 1 1 0 Raf-like Ras-binding domain Isochorismatase PF00857.20 gi|312137307|ref|YP_004004644.1| - 8.1e-45 153.1 0.0 9.1e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF2117 PF09890.9 gi|312137308|ref|YP_004004645.1| - 1.7e-81 272.7 10.2 1.7e-81 272.7 10.2 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|312137308|ref|YP_004004645.1| - 0.004 16.4 0.4 0.0071 15.6 0.1 1.5 2 0 0 2 2 2 1 ATP-NAD kinase AIRS PF00586.24 gi|312137309|ref|YP_004004646.1| - 6.5e-18 65.2 0.3 1.2e-17 64.4 0.3 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|312137309|ref|YP_004004646.1| - 1.2e-17 64.5 0.0 1.9e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF3336 PF11815.8 gi|312137309|ref|YP_004004646.1| - 0.059 13.1 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3336) DUF2102 PF09875.9 gi|312137311|ref|YP_004004648.1| - 3.2e-43 145.6 0.1 4.1e-43 145.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) GcnA_N PF18229.1 gi|312137311|ref|YP_004004648.1| - 0.17 11.9 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 N-acetyl-beta-D-glucosaminidase N-terminal domain DUF2111 PF09884.9 gi|312137312|ref|YP_004004649.1| - 5e-39 132.2 0.9 6.2e-39 132.0 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Oxidored_molyb PF00174.19 gi|312137312|ref|YP_004004649.1| - 0.09 12.4 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain DUF2112 PF09885.9 gi|312137313|ref|YP_004004650.1| - 1e-66 223.4 0.2 1.1e-66 223.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.20 gi|312137314|ref|YP_004004651.1| - 9.6e-61 205.6 6.6 1.4e-60 205.0 6.6 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|312137314|ref|YP_004004651.1| - 4.1e-06 27.1 1.9 0.056 13.9 0.2 2.8 2 1 0 2 2 2 2 Cell division protein FtsA MutL PF13941.6 gi|312137314|ref|YP_004004651.1| - 0.0013 17.5 2.1 0.047 12.3 0.3 2.3 2 0 0 2 2 2 2 MutL protein CGGC PF08821.11 gi|312137314|ref|YP_004004651.1| - 0.0055 16.9 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 CGGC domain Peptidase_M22 PF00814.25 gi|312137314|ref|YP_004004651.1| - 0.056 13.1 0.0 11 5.6 0.0 2.5 3 0 0 3 3 3 0 Glycoprotease family UPF0004 PF00919.20 gi|312137314|ref|YP_004004651.1| - 0.071 13.2 0.2 0.58 10.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 FGGY_N PF00370.21 gi|312137314|ref|YP_004004651.1| - 0.091 12.3 0.1 2.3 7.7 0.1 2.4 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Peptidase_M78 PF06114.13 gi|312137314|ref|YP_004004651.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 IrrE N-terminal-like domain Hydant_A_N PF05378.13 gi|312137314|ref|YP_004004651.1| - 0.21 11.3 5.5 0.081 12.6 1.7 2.2 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region FTR_C PF02741.15 gi|312137315|ref|YP_004004652.1| - 5.4e-59 198.5 0.0 1.2e-58 197.4 0.0 1.5 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|312137315|ref|YP_004004652.1| - 1.2e-47 161.5 0.0 1.7e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase HAD_2 PF13419.6 gi|312137316|ref|YP_004004653.1| - 1.8e-05 24.9 3.0 0.00011 22.3 0.7 2.5 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|312137316|ref|YP_004004653.1| - 0.0021 17.2 0.4 0.0054 15.9 0.1 1.8 2 0 0 2 2 2 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|312137316|ref|YP_004004653.1| - 0.0039 17.0 2.7 0.0068 16.2 2.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|312137316|ref|YP_004004653.1| - 0.0054 17.1 0.0 0.018 15.3 0.0 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|312137316|ref|YP_004004653.1| - 0.014 15.4 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like HAD PF12710.7 gi|312137316|ref|YP_004004653.1| - 0.025 15.0 0.0 2.9 8.2 0.0 2.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|312137316|ref|YP_004004653.1| - 0.058 13.2 0.6 0.28 11.0 0.0 2.3 2 1 0 2 2 2 0 NLI interacting factor-like phosphatase Band_7_C PF16200.5 gi|312137316|ref|YP_004004653.1| - 0.19 11.8 0.0 0.79 9.8 0.0 2.1 2 0 0 2 2 2 0 C-terminal region of band_7 40S_S4_C PF16121.5 gi|312137316|ref|YP_004004653.1| - 0.55 9.9 3.1 0.92 9.2 0.0 2.8 4 0 0 4 4 4 0 40S ribosomal protein S4 C-terminus PfkB PF00294.24 gi|312137317|ref|YP_004004654.1| - 6e-55 186.7 0.0 6.8e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TrwB_AAD_bind PF10412.9 gi|312137318|ref|YP_004004655.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.6 gi|312137319|ref|YP_004004656.1| - 5.4e-67 225.1 0.6 8e-67 224.6 0.6 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|312137319|ref|YP_004004656.1| - 1.1e-22 80.5 0.0 1.4e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|312137319|ref|YP_004004656.1| - 1.1e-11 44.7 0.0 1.9e-11 43.9 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|312137319|ref|YP_004004656.1| - 1.1e-11 44.6 0.2 2.5e-10 40.1 0.2 2.1 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 gi|312137319|ref|YP_004004656.1| - 3.7e-10 39.7 0.4 5.2e-09 35.9 0.4 2.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|312137319|ref|YP_004004656.1| - 1.4e-09 37.9 0.4 2.1e-08 34.0 0.4 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|312137319|ref|YP_004004656.1| - 4e-07 29.5 1.1 7.7e-06 25.3 1.1 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.11 gi|312137319|ref|YP_004004656.1| - 0.00097 18.5 0.4 0.0071 15.7 0.1 2.0 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.22 gi|312137319|ref|YP_004004656.1| - 0.0057 16.3 0.3 0.29 10.8 0.1 2.3 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain FTHFS PF01268.19 gi|312137319|ref|YP_004004656.1| - 0.039 12.2 0.2 0.065 11.4 0.2 1.3 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_24 PF13479.6 gi|312137319|ref|YP_004004656.1| - 0.082 12.6 0.1 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|312137319|ref|YP_004004656.1| - 0.095 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|312137319|ref|YP_004004656.1| - 0.16 11.8 0.3 0.61 9.8 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Radical_SAM PF04055.21 gi|312137320|ref|YP_004004657.1| - 2.2e-15 57.4 0.0 5.3e-15 56.2 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|312137320|ref|YP_004004657.1| - 0.003 17.6 0.0 0.0064 16.5 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain RadC PF04002.15 gi|312137320|ref|YP_004004657.1| - 0.11 12.4 1.1 19 5.2 0.1 3.2 3 1 0 3 3 3 0 RadC-like JAB domain AAA PF00004.29 gi|312137320|ref|YP_004004657.1| - 0.16 12.4 0.1 1 9.8 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Silic_transp PF03842.13 gi|312137320|ref|YP_004004657.1| - 0.22 9.8 0.0 0.28 9.4 0.0 1.2 1 0 0 1 1 1 0 Silicon transporter DUF2142 PF09913.9 gi|312137321|ref|YP_004004658.1| - 7.3e-78 262.1 24.6 7.3e-78 262.1 24.6 1.5 1 1 1 2 2 2 1 Predicted membrane protein (DUF2142) Ribosomal_L50 PF10501.9 gi|312137321|ref|YP_004004658.1| - 0.012 15.7 0.4 0.025 14.7 0.4 1.4 1 0 0 1 1 1 0 Ribosomal subunit 39S Cpta_toxin PF07254.12 gi|312137321|ref|YP_004004658.1| - 2.2 8.3 5.7 6.6 6.7 0.5 3.4 2 1 1 3 3 3 0 Membrane-bound toxin component of toxin-antitoxin system GATase_7 PF13537.6 gi|312137322|ref|YP_004004659.1| - 9.7e-18 64.3 0.0 1.4e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|312137322|ref|YP_004004659.1| - 5.4e-17 62.3 0.0 7.7e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|312137322|ref|YP_004004659.1| - 1.1e-05 24.4 0.8 0.27 9.9 0.0 3.1 2 1 1 3 3 3 3 Glutamine amidotransferases class-II Fra10Ac1 PF09725.9 gi|312137322|ref|YP_004004659.1| - 0.0031 17.6 0.0 0.0055 16.8 0.0 1.4 1 0 0 1 1 1 1 Folate-sensitive fragile site protein Fra10Ac1 GATase_4 PF13230.6 gi|312137322|ref|YP_004004659.1| - 0.0049 15.8 0.0 0.0066 15.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GXGXG PF01493.19 gi|312137323|ref|YP_004004660.1| - 1.7e-32 112.5 10.4 2.3e-32 112.2 10.4 1.1 1 0 0 1 1 1 1 GXGXG motif UPF0180 PF03698.13 gi|312137323|ref|YP_004004660.1| - 0.039 14.1 0.2 2.7 8.2 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) FrhB_FdhB_C PF04432.13 gi|312137324|ref|YP_004004661.1| - 1.2e-41 142.1 0.2 1.2e-41 142.1 0.2 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|312137324|ref|YP_004004661.1| - 7.2e-19 67.7 0.0 1.4e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.6 gi|312137324|ref|YP_004004661.1| - 3.3e-05 23.9 11.1 3.4e-05 23.9 9.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|312137324|ref|YP_004004661.1| - 9.6e-05 22.4 9.5 9.6e-05 22.4 9.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312137324|ref|YP_004004661.1| - 0.00033 20.3 4.4 0.00033 20.3 4.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137324|ref|YP_004004661.1| - 0.00096 19.2 12.3 0.00096 19.2 12.3 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137324|ref|YP_004004661.1| - 0.0018 18.3 3.4 0.0018 18.3 3.4 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|312137324|ref|YP_004004661.1| - 0.022 14.8 1.7 0.022 14.8 1.7 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312137324|ref|YP_004004661.1| - 0.052 14.5 2.2 0.052 14.5 2.2 3.7 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|312137324|ref|YP_004004661.1| - 0.08 13.5 0.1 0.08 13.5 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|312137324|ref|YP_004004661.1| - 0.14 12.2 0.2 3.5 7.7 0.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_7 PF12838.7 gi|312137324|ref|YP_004004661.1| - 0.81 10.3 16.3 0.47 11.1 11.7 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137324|ref|YP_004004661.1| - 3.7 8.7 18.3 0.4 11.7 2.7 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137324|ref|YP_004004661.1| - 8.3 6.9 14.5 0.33 11.4 1.5 3.1 2 1 3 5 5 4 0 4Fe-4S dicluster domain Glu_synthase PF01645.17 gi|312137325|ref|YP_004004662.1| - 1.5e-134 448.8 7.5 4.5e-134 447.2 7.5 1.7 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|312137325|ref|YP_004004662.1| - 1.5e-14 53.8 19.7 6.6e-13 48.4 9.5 3.1 2 1 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|312137325|ref|YP_004004662.1| - 5.6e-14 52.3 3.9 8.1e-14 51.7 3.0 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|312137325|ref|YP_004004662.1| - 9.5e-09 34.7 13.7 5.1e-08 32.3 7.8 2.9 4 0 0 4 4 4 1 IMP dehydrogenase / GMP reductase domain Glu_syn_central PF04898.14 gi|312137325|ref|YP_004004662.1| - 1.2e-07 31.6 0.4 0.00011 21.8 0.1 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_21 PF14697.6 gi|312137325|ref|YP_004004662.1| - 1.8e-07 31.1 8.6 1.8e-07 31.1 8.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|312137325|ref|YP_004004662.1| - 2.2e-07 30.4 2.8 2.2e-07 30.4 2.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|312137325|ref|YP_004004662.1| - 9.9e-07 28.8 22.2 2e-05 24.6 11.7 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|312137325|ref|YP_004004662.1| - 2.8e-06 28.2 10.6 0.00049 21.0 1.5 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|312137325|ref|YP_004004662.1| - 4.3e-05 24.0 1.9 4.3e-05 24.0 1.9 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|312137325|ref|YP_004004662.1| - 0.00087 18.8 0.6 0.0016 17.9 0.3 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein Fer4_6 PF12837.7 gi|312137325|ref|YP_004004662.1| - 0.00096 19.1 2.8 0.00096 19.1 2.8 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|312137325|ref|YP_004004662.1| - 0.0023 17.2 1.0 0.0023 17.2 1.0 1.8 3 0 0 3 3 3 1 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|312137325|ref|YP_004004662.1| - 0.028 13.7 4.4 0.063 12.6 1.3 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Fer4_17 PF13534.6 gi|312137325|ref|YP_004004662.1| - 0.048 14.2 0.7 0.048 14.2 0.7 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain QRPTase_C PF01729.19 gi|312137325|ref|YP_004004662.1| - 0.052 13.3 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain PRAI PF00697.22 gi|312137325|ref|YP_004004662.1| - 0.066 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Fer4_2 PF12797.7 gi|312137325|ref|YP_004004662.1| - 0.066 13.3 23.2 0.07 13.3 2.7 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137325|ref|YP_004004662.1| - 0.066 13.7 0.9 0.066 13.7 0.9 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain CMD PF02627.20 gi|312137325|ref|YP_004004662.1| - 0.089 12.8 0.2 0.41 10.7 0.2 2.2 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Fer4_10 PF13237.6 gi|312137325|ref|YP_004004662.1| - 0.091 12.9 20.2 0.03 14.4 12.5 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137325|ref|YP_004004662.1| - 9.5 7.0 22.6 0.22 12.1 1.7 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain PEP-utilizers_C PF02896.18 gi|312137326|ref|YP_004004663.1| - 4.7e-54 183.5 0.0 6e-54 183.1 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|312137326|ref|YP_004004663.1| - 4.2e-24 84.1 1.3 7.5e-24 83.2 1.3 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Peptidase_M48 PF01435.18 gi|312137327|ref|YP_004004664.1| - 3e-46 157.7 0.0 4.4e-46 157.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|312137327|ref|YP_004004664.1| - 6.7e-07 28.8 0.4 6.7e-07 28.8 0.4 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 EF-hand_5 PF13202.6 gi|312137327|ref|YP_004004664.1| - 1e-06 28.0 1.2 2e-05 23.9 0.1 2.8 3 0 0 3 3 3 1 EF hand EF-hand_1 PF00036.32 gi|312137327|ref|YP_004004664.1| - 0.017 14.6 0.0 0.2 11.3 0.0 2.4 2 0 0 2 2 2 0 EF hand DUF3169 PF11368.8 gi|312137327|ref|YP_004004664.1| - 0.028 13.9 7.7 0.11 12.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) HTH_IclR PF09339.10 gi|312137327|ref|YP_004004664.1| - 0.1 12.4 0.0 11 6.0 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain Peptidase_S24 PF00717.23 gi|312137328|ref|YP_004004665.1| - 9.1e-14 51.2 1.6 1.5e-13 50.4 1.6 1.4 1 0 0 1 1 1 1 Peptidase S24-like DHquinase_I PF01487.15 gi|312137329|ref|YP_004004666.1| - 3.3e-59 200.9 0.2 3.7e-59 200.8 0.2 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.16 gi|312137329|ref|YP_004004666.1| - 0.0053 15.7 0.4 0.0063 15.5 0.4 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase II Ead_Ea22 PF13935.6 gi|312137329|ref|YP_004004666.1| - 0.13 12.9 0.4 13 6.4 0.1 2.8 1 1 1 2 2 2 0 Ead/Ea22-like protein P-II PF00543.22 gi|312137330|ref|YP_004004667.1| - 5.1e-42 142.6 4.0 5.7e-42 142.5 4.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|312137330|ref|YP_004004667.1| - 0.014 15.6 1.1 1.3 9.3 0.4 2.5 2 1 1 3 3 3 0 Cyclic-di-AMP receptor DUF190 PF02641.15 gi|312137330|ref|YP_004004667.1| - 0.17 12.2 2.2 0.57 10.5 1.4 1.9 1 1 1 2 2 2 0 Uncharacterized ACR, COG1993 Gln-synt_C PF00120.24 gi|312137331|ref|YP_004004668.1| - 4.6e-135 450.1 0.0 5.4e-135 449.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|312137331|ref|YP_004004668.1| - 5.1e-31 106.2 0.1 9.8e-31 105.3 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AA_permease_2 PF13520.6 gi|312137332|ref|YP_004004669.1| - 5.7e-59 200.0 60.3 8.2e-59 199.5 60.3 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|312137332|ref|YP_004004669.1| - 2e-39 135.5 52.9 3e-39 135.0 52.9 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|312137332|ref|YP_004004669.1| - 5.4e-17 61.6 5.9 5.4e-17 61.6 5.9 5.6 7 0 0 7 7 7 1 C-terminus of AA_permease SLATT_5 PF18160.1 gi|312137332|ref|YP_004004669.1| - 0.11 11.8 3.8 0.11 11.8 0.3 2.8 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 UPF0139 PF03669.13 gi|312137332|ref|YP_004004669.1| - 0.37 10.7 1.7 1.3 9.0 1.1 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0139) Spore_permease PF03845.13 gi|312137332|ref|YP_004004669.1| - 1.1 8.0 40.8 0.11 11.3 5.6 3.9 2 1 1 3 3 3 0 Spore germination protein TcdA_TcdB_pore PF12920.7 gi|312137332|ref|YP_004004669.1| - 1.4 7.1 2.9 2.3 6.3 2.9 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain FIST PF08495.10 gi|312137333|ref|YP_004004670.1| - 2.5e-34 118.8 0.4 8.9e-33 113.7 0.1 2.1 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.9 gi|312137333|ref|YP_004004670.1| - 1.6e-21 76.7 0.0 8.7e-21 74.2 0.0 2.0 2 0 0 2 2 2 1 FIST C domain AdoMet_Synthase PF01941.19 gi|312137334|ref|YP_004004671.1| - 5.1e-182 605.0 7.1 5.8e-182 604.9 7.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) NusG_add PF18298.1 gi|312137334|ref|YP_004004671.1| - 0.0027 17.9 1.1 0.0085 16.3 1.1 1.8 1 0 0 1 1 1 1 NusG additional domain tRNA-synt_1 PF00133.22 gi|312137335|ref|YP_004004672.1| - 5.2e-208 692.1 11.1 7.4e-208 691.6 11.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|312137335|ref|YP_004004672.1| - 9.6e-33 113.3 2.6 9.6e-33 113.3 2.6 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|312137335|ref|YP_004004672.1| - 8.1e-24 84.1 8.8 1.4e-10 40.5 0.0 4.6 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|312137335|ref|YP_004004672.1| - 8.1e-08 32.0 1.5 3.1e-07 30.1 0.1 2.3 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|312137335|ref|YP_004004672.1| - 1.8e-06 27.6 0.0 1.3e-05 24.7 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|312137335|ref|YP_004004672.1| - 2.4e-05 23.4 0.0 0.00024 20.1 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) IBR PF01485.21 gi|312137335|ref|YP_004004672.1| - 0.15 12.3 2.9 7.2 6.9 0.1 3.1 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain Cas6b_C PF17262.2 gi|312137335|ref|YP_004004672.1| - 0.23 11.6 5.1 0.61 10.2 0.0 3.4 3 0 0 3 3 3 0 Cas6b C-terminal domain AIRS_C PF02769.22 gi|312137336|ref|YP_004004673.1| - 2.5e-61 206.4 0.4 1.7e-34 119.2 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|312137336|ref|YP_004004673.1| - 1e-49 167.1 0.6 1.2e-23 83.5 0.2 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|312137336|ref|YP_004004673.1| - 5.8e-10 39.6 0.0 1.7e-09 38.0 0.0 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain CobN-Mg_chel PF02514.16 gi|312137337|ref|YP_004004674.1| - 2e-246 820.6 0.0 3e-189 631.3 0.0 2.3 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF1825 PF08855.10 gi|312137337|ref|YP_004004674.1| - 0.016 15.1 0.1 0.044 13.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) Sda PF08970.10 gi|312137337|ref|YP_004004674.1| - 0.17 11.6 4.1 1.7 8.4 1.3 2.6 1 1 1 2 2 2 0 Sporulation inhibitor A CobD_Cbib PF03186.13 gi|312137338|ref|YP_004004675.1| - 2.2e-88 296.1 0.0 2.7e-88 295.8 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Reticulon PF02453.17 gi|312137338|ref|YP_004004675.1| - 0.003 17.6 6.5 0.17 11.8 1.3 2.9 2 1 1 3 3 3 2 Reticulon DUF2892 PF11127.8 gi|312137338|ref|YP_004004675.1| - 0.052 13.6 0.5 0.16 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) CYTH PF01928.21 gi|312137339|ref|YP_004004676.1| - 6.7e-36 123.9 7.1 7.7e-36 123.7 7.1 1.0 1 0 0 1 1 1 1 CYTH domain ATP-synt_C PF00137.21 gi|312137340|ref|YP_004004677.1| - 2e-18 66.5 9.1 2e-18 66.5 9.1 1.5 2 0 0 2 2 2 1 ATP synthase subunit C TauE PF01925.19 gi|312137341|ref|YP_004004678.1| - 7.9e-46 156.6 36.1 9.9e-46 156.3 36.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF865 PF05906.11 gi|312137341|ref|YP_004004678.1| - 0.15 11.9 1.4 0.26 11.1 1.4 1.4 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) ATPase PF06745.13 gi|312137342|ref|YP_004004679.1| - 4.6e-90 301.0 0.2 5.2e-90 300.8 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|312137342|ref|YP_004004679.1| - 3.1e-05 23.6 0.0 9.5e-05 22.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|312137342|ref|YP_004004679.1| - 8.5e-05 21.9 0.1 0.00019 20.8 0.1 1.6 1 0 0 1 1 1 1 Rad51 GvpD PF07088.11 gi|312137342|ref|YP_004004679.1| - 9.4e-05 21.2 0.1 0.043 12.4 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein NTPase_1 PF03266.15 gi|312137342|ref|YP_004004679.1| - 0.00027 20.9 0.0 0.00041 20.3 0.0 1.3 1 0 0 1 1 1 1 NTPase T2SSE PF00437.20 gi|312137342|ref|YP_004004679.1| - 0.00066 18.8 0.0 0.00097 18.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DnaB_C PF03796.15 gi|312137342|ref|YP_004004679.1| - 0.005 16.2 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|312137342|ref|YP_004004679.1| - 0.0069 16.8 0.0 0.013 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|312137342|ref|YP_004004679.1| - 0.016 15.5 0.0 0.028 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|312137342|ref|YP_004004679.1| - 0.017 15.4 0.0 0.029 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|312137342|ref|YP_004004679.1| - 0.028 14.8 0.1 0.049 14.0 0.1 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|312137342|ref|YP_004004679.1| - 0.042 13.9 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|312137342|ref|YP_004004679.1| - 0.042 13.7 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_7 PF12775.7 gi|312137342|ref|YP_004004679.1| - 0.049 13.1 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|312137342|ref|YP_004004679.1| - 0.052 12.8 0.0 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PPV_E1_C PF00519.17 gi|312137342|ref|YP_004004679.1| - 0.052 12.4 0.0 0.075 11.9 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase HutP PF09021.11 gi|312137342|ref|YP_004004679.1| - 0.06 13.7 0.0 0.096 13.0 0.0 1.3 1 0 0 1 1 1 0 HutP TsaE PF02367.17 gi|312137342|ref|YP_004004679.1| - 0.077 13.0 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|312137342|ref|YP_004004679.1| - 0.14 12.4 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain HTH_38 PF13936.6 gi|312137343|ref|YP_004004680.1| - 2.8e-06 27.0 0.3 7.9e-06 25.5 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|312137343|ref|YP_004004680.1| - 2.7e-05 23.8 0.1 5.3e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain AAA_23 PF13476.6 gi|312137343|ref|YP_004004680.1| - 8e-05 23.2 10.9 8.3e-05 23.2 10.9 1.1 1 0 0 1 1 1 1 AAA domain Sigma70_r4_2 PF08281.12 gi|312137343|ref|YP_004004680.1| - 0.00036 20.2 0.1 0.0011 18.6 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|312137343|ref|YP_004004680.1| - 0.00039 19.9 0.1 0.0017 17.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|312137343|ref|YP_004004680.1| - 0.0004 20.3 0.7 0.0013 18.7 0.1 2.2 2 0 0 2 2 1 1 HTH domain HTH_17 PF12728.7 gi|312137343|ref|YP_004004680.1| - 0.00072 19.7 0.8 0.0058 16.8 0.8 2.7 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|312137343|ref|YP_004004680.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_40 PF14493.6 gi|312137343|ref|YP_004004680.1| - 0.0013 19.1 8.7 0.014 15.9 8.7 2.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|312137343|ref|YP_004004680.1| - 0.0016 18.5 0.1 0.0027 17.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Cluap1 PF10234.9 gi|312137343|ref|YP_004004680.1| - 0.0017 17.8 7.8 0.0021 17.5 7.8 1.2 1 0 0 1 1 1 1 Clusterin-associated protein-1 GerE PF00196.19 gi|312137343|ref|YP_004004680.1| - 0.0017 17.8 0.0 0.005 16.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family NPV_P10 PF05531.12 gi|312137343|ref|YP_004004680.1| - 0.0041 17.6 1.8 0.0088 16.5 1.4 1.8 2 0 0 2 2 1 1 Nucleopolyhedrovirus P10 protein DUF148 PF02520.17 gi|312137343|ref|YP_004004680.1| - 0.0041 17.2 3.7 0.0084 16.2 3.7 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF148 HTH_29 PF13551.6 gi|312137343|ref|YP_004004680.1| - 0.0046 17.0 0.0 0.0081 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF4795 PF16043.5 gi|312137343|ref|YP_004004680.1| - 0.0055 16.3 5.7 0.0059 16.2 5.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) ALIX_LYPXL_bnd PF13949.6 gi|312137343|ref|YP_004004680.1| - 0.0056 16.0 6.0 0.0074 15.6 6.0 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Sigma70_r4 PF04545.16 gi|312137343|ref|YP_004004680.1| - 0.0071 15.8 1.6 0.01 15.3 0.3 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|312137343|ref|YP_004004680.1| - 0.013 15.8 0.1 0.04 14.3 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|312137343|ref|YP_004004680.1| - 0.022 14.8 0.2 0.022 14.8 0.2 2.6 2 1 0 2 2 2 0 Helix-turn-helix HTH_20 PF12840.7 gi|312137343|ref|YP_004004680.1| - 0.03 14.4 0.0 0.094 12.8 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|312137343|ref|YP_004004680.1| - 0.031 14.0 0.1 0.13 12.0 0.1 2.1 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Med30 PF11315.8 gi|312137343|ref|YP_004004680.1| - 0.039 14.2 6.9 0.054 13.7 6.9 1.3 1 0 0 1 1 1 0 Mediator complex subunit 30 MarR_2 PF12802.7 gi|312137343|ref|YP_004004680.1| - 0.039 13.8 0.1 0.079 12.9 0.1 1.5 1 0 0 1 1 1 0 MarR family Spc7 PF08317.11 gi|312137343|ref|YP_004004680.1| - 0.041 12.8 13.1 0.053 12.4 13.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein AAA_11 PF13086.6 gi|312137343|ref|YP_004004680.1| - 0.056 13.2 4.1 0.062 13.1 4.1 1.1 1 0 0 1 1 1 0 AAA domain eIF-5_eIF-2B PF01873.17 gi|312137343|ref|YP_004004680.1| - 0.061 13.2 0.4 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_Tnp_1 PF01527.20 gi|312137343|ref|YP_004004680.1| - 0.089 13.1 4.8 3.3 8.1 4.8 2.3 1 1 0 1 1 1 0 Transposase FlaC_arch PF05377.11 gi|312137343|ref|YP_004004680.1| - 0.13 12.7 14.0 0.068 13.6 9.8 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF489 PF04356.12 gi|312137343|ref|YP_004004680.1| - 0.13 12.2 1.3 0.18 11.8 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) DUF2316 PF10078.9 gi|312137343|ref|YP_004004680.1| - 0.15 12.3 4.0 3.6 7.9 0.1 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) Laminin_II PF06009.12 gi|312137343|ref|YP_004004680.1| - 0.16 12.0 7.6 0.38 10.8 2.3 2.1 1 1 1 2 2 2 0 Laminin Domain II Snapin_Pallidin PF14712.6 gi|312137343|ref|YP_004004680.1| - 0.16 12.4 7.6 0.25 11.8 6.2 1.7 1 1 0 1 1 1 0 Snapin/Pallidin HTH_19 PF12844.7 gi|312137343|ref|YP_004004680.1| - 0.21 11.6 7.9 0.45 10.6 5.0 2.8 2 1 0 2 2 1 0 Helix-turn-helix domain LMP PF04778.12 gi|312137343|ref|YP_004004680.1| - 0.24 11.3 11.5 0.27 11.1 10.7 1.6 1 1 0 1 1 1 0 LMP repeated region YojJ PF10372.9 gi|312137343|ref|YP_004004680.1| - 0.29 11.3 6.6 0.29 11.3 5.3 1.7 2 0 0 2 2 1 0 Bacterial membrane-spanning protein N-terminus DUF1664 PF07889.12 gi|312137343|ref|YP_004004680.1| - 0.3 11.1 7.5 0.18 11.8 4.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF2443 PF10398.9 gi|312137343|ref|YP_004004680.1| - 0.39 10.8 7.3 0.14 12.2 2.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2443) Goodbye PF17109.5 gi|312137343|ref|YP_004004680.1| - 0.44 11.0 5.4 0.51 10.8 3.8 1.8 1 1 2 3 3 3 0 fungal STAND N-terminal Goodbye domain Sigma70_ner PF04546.13 gi|312137343|ref|YP_004004680.1| - 0.47 10.3 11.4 6.3 6.6 7.3 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region Lipoprotein_20 PF13942.6 gi|312137343|ref|YP_004004680.1| - 0.49 10.3 10.8 0.36 10.7 7.8 1.9 1 1 1 2 2 2 0 YfhG lipoprotein Atg14 PF10186.9 gi|312137343|ref|YP_004004680.1| - 0.5 9.4 5.7 0.57 9.2 5.7 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|312137343|ref|YP_004004680.1| - 0.52 10.1 12.3 0.76 9.6 7.8 2.5 2 1 0 2 2 2 0 Septum formation initiator bZIP_1 PF00170.21 gi|312137343|ref|YP_004004680.1| - 0.57 10.3 14.1 1.6 8.9 14.1 1.8 1 0 0 1 1 1 0 bZIP transcription factor DUF883 PF05957.13 gi|312137343|ref|YP_004004680.1| - 0.71 10.5 8.0 7.7 7.2 2.9 2.5 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Med21 PF11221.8 gi|312137343|ref|YP_004004680.1| - 0.89 9.8 14.1 2.2 8.5 8.9 2.2 2 0 0 2 2 2 0 Subunit 21 of Mediator complex DUF745 PF05335.13 gi|312137343|ref|YP_004004680.1| - 0.91 9.2 4.6 1.3 8.8 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF745) APG6_N PF17675.1 gi|312137343|ref|YP_004004680.1| - 1.1 9.8 16.6 0.58 10.7 14.9 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF16 PF01519.16 gi|312137343|ref|YP_004004680.1| - 1.2 9.7 11.7 2.4 8.7 8.5 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|312137343|ref|YP_004004680.1| - 1.4 6.8 5.8 1.3 6.9 4.5 1.3 1 1 0 1 1 1 0 Prominin XhlA PF10779.9 gi|312137343|ref|YP_004004680.1| - 1.4 9.2 18.4 4.3 7.6 11.7 2.5 2 0 0 2 2 2 0 Haemolysin XhlA YabA PF06156.13 gi|312137343|ref|YP_004004680.1| - 1.6 9.4 11.2 0.94 10.2 7.8 2.0 1 1 1 2 2 2 0 Initiation control protein YabA DUF4140 PF13600.6 gi|312137343|ref|YP_004004680.1| - 1.8 9.1 6.4 3.6 8.1 6.4 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF4446 PF14584.6 gi|312137343|ref|YP_004004680.1| - 2.5 8.1 7.9 3 7.8 6.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF948 PF06103.11 gi|312137343|ref|YP_004004680.1| - 3.5 8.0 5.0 52 4.2 5.0 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Phage_holin_6_1 PF09682.10 gi|312137343|ref|YP_004004680.1| - 4 7.9 8.8 1.7 9.1 0.4 2.5 1 1 1 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) BST2 PF16716.5 gi|312137343|ref|YP_004004680.1| - 4.5 7.9 12.3 3.8 8.2 10.0 1.9 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 UPF0242 PF06785.11 gi|312137343|ref|YP_004004680.1| - 5.2 7.1 14.0 8.5 6.4 14.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus LMBR1 PF04791.16 gi|312137343|ref|YP_004004680.1| - 7.4 5.3 5.8 7.7 5.3 5.3 1.3 1 1 0 1 1 1 0 LMBR1-like membrane protein BPS1 PF05633.11 gi|312137343|ref|YP_004004680.1| - 7.6 5.4 9.5 9.7 5.1 9.5 1.1 1 0 0 1 1 1 0 Protein BYPASS1-related DUF2299 PF10061.9 gi|312137344|ref|YP_004004681.1| - 3.4e-48 162.9 0.5 3.9e-48 162.7 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) KR PF08659.10 gi|312137344|ref|YP_004004681.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 1 0 1 1 1 0 KR domain DUF87 PF01935.17 gi|312137345|ref|YP_004004682.1| - 0.062 13.4 2.2 0.99 9.5 0.5 2.2 1 1 0 2 2 2 0 Helicase HerA, central domain DUF3149 PF11346.8 gi|312137345|ref|YP_004004682.1| - 0.14 11.8 3.0 0.32 10.6 3.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) SNARE_assoc PF09335.11 gi|312137346|ref|YP_004004683.1| - 5.1e-26 91.5 3.9 1.1e-25 90.5 3.9 1.5 1 0 0 1 1 1 1 SNARE associated Golgi protein NADH-u_ox-rdase PF10785.9 gi|312137346|ref|YP_004004683.1| - 0.086 13.5 1.1 1.3 9.7 0.0 3.0 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Sua5_yciO_yrdC PF01300.18 gi|312137347|ref|YP_004004684.1| - 1.7e-49 167.7 0.1 2e-49 167.5 0.1 1.0 1 0 0 1 1 1 1 Telomere recombination YueH PF14166.6 gi|312137347|ref|YP_004004684.1| - 0.061 13.2 0.1 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 YueH-like protein CRISPR_Cas2 PF09827.9 gi|312137348|ref|YP_004004685.1| - 1.3e-23 83.0 1.6 1.6e-23 82.7 1.6 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 TetR_C_10 PF16295.5 gi|312137348|ref|YP_004004685.1| - 0.024 15.0 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Cas_Cas6 PF01881.16 gi|312137351|ref|YP_004004688.1| - 2.4e-20 73.6 3.2 2.4e-20 73.6 3.2 1.8 2 0 0 2 2 2 1 CRISPR associated protein Cas6 Zn_dep_PLPC PF00882.18 gi|312137352|ref|YP_004004689.1| - 1.6e-18 67.3 1.9 2.1e-18 67.0 1.9 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|312137352|ref|YP_004004689.1| - 0.17 11.6 0.0 3.5 7.3 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) OrfB_IS605 PF01385.19 gi|312137356|ref|YP_004004693.1| - 8.3e-28 97.0 1.5 8.3e-28 97.0 1.5 2.4 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|312137356|ref|YP_004004693.1| - 5.3e-14 51.4 0.0 1.8e-13 49.7 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|312137356|ref|YP_004004693.1| - 7.2e-06 25.8 0.0 2.3e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Methyltransf_20 PF12147.8 gi|312137356|ref|YP_004004693.1| - 0.018 14.2 0.4 0.027 13.6 0.4 1.2 1 0 0 1 1 1 0 Putative methyltransferase TLE_N PF03920.15 gi|312137356|ref|YP_004004693.1| - 7.2 6.7 9.3 2.1 8.4 0.4 3.0 2 1 1 3 3 3 0 Groucho/TLE N-terminal Q-rich domain S_4TM PF18159.1 gi|312137357|ref|YP_004004694.1| - 0.0025 17.2 1.1 0.0025 17.2 1.1 2.6 2 1 1 3 3 3 1 SMODS-associating 4TM effector domain TRP PF06011.12 gi|312137357|ref|YP_004004694.1| - 0.015 14.1 4.4 0.039 12.7 4.4 1.7 1 1 0 1 1 1 0 Transient receptor potential (TRP) ion channel Serinc PF03348.15 gi|312137357|ref|YP_004004694.1| - 0.029 13.3 0.9 0.057 12.4 0.6 1.7 1 1 0 1 1 1 0 Serine incorporator (Serinc) DUF996 PF06195.13 gi|312137357|ref|YP_004004694.1| - 0.087 13.1 15.8 1.6 9.0 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF996) MIG-14_Wnt-bd PF06664.12 gi|312137357|ref|YP_004004694.1| - 0.2 10.8 21.5 0.09 12.0 14.0 2.1 2 0 0 2 2 2 0 Wnt-binding factor required for Wnt secretion GWT1 PF06423.12 gi|312137357|ref|YP_004004694.1| - 0.41 10.7 4.7 0.39 10.8 2.4 1.9 2 0 0 2 2 2 0 GWT1 YwiC PF14256.6 gi|312137357|ref|YP_004004694.1| - 0.65 10.3 6.2 0.74 10.1 3.4 2.2 2 1 0 2 2 2 0 YwiC-like protein Radical_SAM PF04055.21 gi|312137358|ref|YP_004004695.1| - 1e-18 68.3 0.1 2.4e-18 67.1 0.1 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137358|ref|YP_004004695.1| - 3.1e-11 43.7 0.1 8.1e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137358|ref|YP_004004695.1| - 1.6e-08 34.7 0.0 5.1e-08 33.1 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain PDZ_1 PF12812.7 gi|312137358|ref|YP_004004695.1| - 0.046 13.7 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 PDZ-like domain DHNA PF04038.12 gi|312137359|ref|YP_004004696.1| - 2.1e-40 137.6 0.6 2.5e-40 137.3 0.6 1.1 1 0 0 1 1 1 1 Dihydroneopterin aldolase DUF4013 PF13197.6 gi|312137360|ref|YP_004004697.1| - 4.4e-36 124.3 23.0 4.4e-36 124.3 23.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) CARDB PF07705.11 gi|312137361|ref|YP_004004698.1| - 1.5e-06 28.4 5.2 0.017 15.4 4.3 3.3 2 2 0 2 2 2 2 CARDB DUF11 PF01345.18 gi|312137361|ref|YP_004004698.1| - 0.00037 20.7 0.0 0.66 10.3 0.0 2.9 2 2 0 2 2 2 2 Domain of unknown function DUF11 PKD PF00801.20 gi|312137361|ref|YP_004004698.1| - 0.011 15.6 0.4 0.29 11.0 0.0 2.7 3 0 0 3 3 3 0 PKD domain Arrestin_C PF02752.22 gi|312137361|ref|YP_004004698.1| - 0.025 15.0 0.6 2.8 8.4 0.0 2.3 2 0 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain CBM49 PF09478.10 gi|312137361|ref|YP_004004698.1| - 0.78 10.1 6.7 0.19 12.1 0.4 2.9 4 0 0 4 4 4 0 Carbohydrate binding domain CBM49 UPF0223 PF05256.12 gi|312137362|ref|YP_004004699.1| - 0.037 14.3 0.4 0.079 13.3 0.1 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0223) Transglut_C PF00927.22 gi|312137363|ref|YP_004004700.1| - 0.0044 17.1 2.9 0.1 12.8 0.2 3.3 3 0 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain PapC_N PF13954.6 gi|312137363|ref|YP_004004700.1| - 0.0048 16.9 0.3 1.2 9.1 0.0 2.7 2 0 0 2 2 2 2 PapC N-terminal domain DUF4981 PF16353.5 gi|312137363|ref|YP_004004700.1| - 0.0086 16.5 0.4 5.8 7.5 0.1 3.1 2 0 0 2 2 2 2 Domain of unknown function(DUF4981) Ig_GlcNase PF18368.1 gi|312137363|ref|YP_004004700.1| - 0.022 14.9 2.5 0.67 10.1 0.5 2.8 1 1 1 2 2 2 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF4232 PF14016.6 gi|312137363|ref|YP_004004700.1| - 1.9 8.6 10.8 48 4.1 9.6 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) TssN PF17555.2 gi|312137364|ref|YP_004004701.1| - 0.0063 15.9 17.7 0.0063 15.9 17.7 2.1 1 1 1 2 2 2 1 Type VI secretion system, TssN DUF2500 PF10694.9 gi|312137364|ref|YP_004004701.1| - 0.24 11.9 0.0 0.24 11.9 0.0 3.3 4 1 0 4 4 4 0 Protein of unknown function (DUF2500) DUF2142 PF09913.9 gi|312137364|ref|YP_004004701.1| - 1.1 8.0 18.8 0.022 13.6 2.6 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2142) DUF3021 PF11457.8 gi|312137364|ref|YP_004004701.1| - 2.9 8.2 26.3 0.57 10.5 15.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3021) DHO_dh PF01180.21 gi|312137365|ref|YP_004004702.1| - 2.2e-73 247.1 6.7 2.5e-73 246.9 6.7 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|312137365|ref|YP_004004702.1| - 1.1e-19 70.7 1.1 1.3e-14 54.0 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|312137365|ref|YP_004004702.1| - 1.7e-07 31.0 2.0 1.2e-06 28.1 0.1 2.3 1 1 2 3 3 3 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|312137365|ref|YP_004004702.1| - 8.8e-06 25.0 0.9 2.6e-05 23.4 0.4 1.9 2 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|312137365|ref|YP_004004702.1| - 0.00016 21.2 0.2 0.00085 18.8 0.0 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|312137365|ref|YP_004004702.1| - 0.0016 17.5 2.8 0.0032 16.5 2.3 1.9 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|312137365|ref|YP_004004702.1| - 0.0053 16.2 0.5 0.027 13.9 0.0 2.4 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.12 gi|312137365|ref|YP_004004702.1| - 0.0059 15.8 3.1 0.061 12.5 0.0 2.6 2 1 0 3 3 3 1 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|312137365|ref|YP_004004702.1| - 0.62 9.4 3.0 1.5 8.1 0.1 2.8 4 0 0 4 4 4 0 Thiamine monophosphate synthase Glu_synthase PF01645.17 gi|312137365|ref|YP_004004702.1| - 1.2 8.2 6.7 0.29 10.2 2.6 1.9 2 1 0 2 2 2 0 Conserved region in glutamate synthase Nop PF01798.18 gi|312137366|ref|YP_004004703.1| - 5.3e-60 202.8 1.0 1e-59 201.8 1.0 1.5 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HTH_35 PF13693.6 gi|312137366|ref|YP_004004703.1| - 0.033 14.2 1.0 0.62 10.1 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF4974 PF16344.5 gi|312137366|ref|YP_004004703.1| - 0.059 13.4 6.4 3.9 7.6 2.2 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4974) SLAM PF06214.11 gi|312137366|ref|YP_004004703.1| - 0.066 13.2 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Signaling lymphocytic activation molecule (SLAM) protein ABC1 PF03109.16 gi|312137366|ref|YP_004004703.1| - 0.22 11.7 3.6 0.41 10.8 2.2 2.1 1 1 1 2 2 2 0 ABC1 family SKI PF01202.22 gi|312137366|ref|YP_004004703.1| - 8.6 6.5 7.9 2 8.5 0.2 2.7 3 1 0 3 3 3 0 Shikimate kinase Fibrillarin PF01269.17 gi|312137367|ref|YP_004004704.1| - 8.2e-91 303.1 0.0 9.9e-91 302.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|312137367|ref|YP_004004704.1| - 0.00014 22.5 0.0 0.00023 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|312137367|ref|YP_004004704.1| - 0.0092 16.6 0.0 0.08 13.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|312137367|ref|YP_004004704.1| - 0.16 11.1 0.0 0.42 9.7 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_12 PF08242.12 gi|312137367|ref|YP_004004704.1| - 0.18 12.6 0.0 0.48 11.2 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain HTH_3 PF01381.22 gi|312137368|ref|YP_004004705.1| - 4.4e-06 26.6 0.0 2.2e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|312137368|ref|YP_004004705.1| - 2.5e-05 24.2 0.2 7.2e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|312137368|ref|YP_004004705.1| - 4.7e-05 23.2 0.0 8.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|312137368|ref|YP_004004705.1| - 0.00014 21.3 0.0 0.00026 20.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|312137368|ref|YP_004004705.1| - 0.0031 17.8 0.0 0.0063 16.8 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|312137368|ref|YP_004004705.1| - 0.06 13.4 0.0 0.066 13.3 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|312137368|ref|YP_004004705.1| - 0.18 11.5 0.2 0.73 9.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 KORA PF16509.5 gi|312137368|ref|YP_004004705.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor SIS PF01380.22 gi|312137369|ref|YP_004004706.1| - 3.6e-19 68.9 0.3 4.8e-19 68.5 0.3 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|312137369|ref|YP_004004706.1| - 9.7e-13 48.3 3.2 2.7e-07 30.7 0.3 2.2 1 1 1 2 2 2 2 SIS domain SMN PF06003.12 gi|312137369|ref|YP_004004706.1| - 0.0096 15.2 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Survival motor neuron protein (SMN) PRMT5 PF05185.16 gi|312137369|ref|YP_004004706.1| - 0.053 13.4 0.5 0.14 12.0 0.1 1.8 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase FdhD-NarQ PF02634.15 gi|312137370|ref|YP_004004707.1| - 4.6e-50 170.5 0.0 2.3e-42 145.3 0.0 2.0 1 1 1 2 2 2 2 FdhD/NarQ family DUF1667 PF07892.11 gi|312137370|ref|YP_004004707.1| - 0.037 14.1 0.1 0.08 13.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) DUF1447 PF07288.11 gi|312137370|ref|YP_004004707.1| - 0.058 13.4 0.1 0.14 12.2 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) UPF0086 PF01868.16 gi|312137370|ref|YP_004004707.1| - 0.1 12.5 0.4 0.22 11.5 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function UPF0086 Radical_SAM PF04055.21 gi|312137371|ref|YP_004004708.1| - 2.9e-32 112.4 1.5 9.8e-32 110.6 0.2 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|312137371|ref|YP_004004708.1| - 2.7e-23 82.3 0.2 4.7e-23 81.5 0.2 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|312137371|ref|YP_004004708.1| - 3.9e-10 40.2 0.1 8.7e-10 39.0 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137371|ref|YP_004004708.1| - 1.4e-09 38.1 0.2 3.3e-09 36.9 0.2 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain FMP23 PF17315.2 gi|312137371|ref|YP_004004708.1| - 0.033 14.4 0.3 0.061 13.5 0.3 1.4 1 0 0 1 1 1 0 Found in mitochondrial proteome Chlam_PMP PF02415.17 gi|312137372|ref|YP_004004709.1| - 8.9e-13 47.9 41.7 0.11 13.1 0.5 8.8 8 0 0 8 8 8 7 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat TOBE PF03459.17 gi|312137373|ref|YP_004004710.1| - 1.3e-13 51.0 0.8 1.4e-13 50.9 0.8 1.0 1 0 0 1 1 1 1 TOBE domain Rad9_Rad53_bind PF08605.10 gi|312137373|ref|YP_004004710.1| - 0.068 13.4 0.1 0.084 13.1 0.1 1.2 1 1 0 1 1 1 0 Fungal Rad9-like Rad53-binding HOK_GEF PF01848.16 gi|312137373|ref|YP_004004710.1| - 0.07 12.6 0.1 0.13 11.7 0.1 1.5 1 1 0 1 1 1 0 Hok/gef family OB_aCoA_assoc PF01796.17 gi|312137373|ref|YP_004004710.1| - 0.13 12.3 0.1 0.15 12.1 0.1 1.2 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated FmdE PF02663.14 gi|312137374|ref|YP_004004711.1| - 2.3e-28 98.8 0.0 3.1e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DZR PF12773.7 gi|312137374|ref|YP_004004711.1| - 0.065 13.3 1.9 0.15 12.2 1.9 1.6 1 0 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.16 gi|312137374|ref|YP_004004711.1| - 0.51 10.7 5.7 0.091 13.1 2.0 1.7 2 0 0 2 2 2 0 C1 domain Molydop_binding PF01568.21 gi|312137375|ref|YP_004004712.1| - 1.2e-11 44.6 0.0 2.1e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain GXGXG PF01493.19 gi|312137375|ref|YP_004004712.1| - 6.8e-10 38.8 24.7 2.6e-09 37.0 24.7 2.2 1 1 0 1 1 1 1 GXGXG motif Molybdopterin PF00384.22 gi|312137376|ref|YP_004004713.1| - 9.9e-18 64.3 0.0 3.8e-17 62.4 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|312137376|ref|YP_004004713.1| - 3e-06 27.0 1.8 0.00018 21.3 0.2 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|312137376|ref|YP_004004713.1| - 0.0049 16.6 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit MobB PF03205.14 gi|312137377|ref|YP_004004714.1| - 6.2e-21 74.7 0.5 1.1e-20 73.9 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|312137377|ref|YP_004004714.1| - 1.5e-06 27.7 3.4 3e-06 26.8 3.4 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster NTPase_1 PF03266.15 gi|312137377|ref|YP_004004714.1| - 2.6e-05 24.2 0.1 7.3e-05 22.7 0.1 1.7 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.6 gi|312137377|ref|YP_004004714.1| - 0.00041 20.4 0.3 0.0011 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|312137377|ref|YP_004004714.1| - 0.0022 17.9 1.4 0.0022 17.9 1.4 1.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea DLIC PF05783.11 gi|312137377|ref|YP_004004714.1| - 0.031 13.1 0.0 0.038 12.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) MeaB PF03308.16 gi|312137377|ref|YP_004004714.1| - 0.038 13.0 0.3 0.061 12.3 0.3 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|312137377|ref|YP_004004714.1| - 0.041 13.4 0.1 0.077 12.5 0.1 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain NACHT PF05729.12 gi|312137377|ref|YP_004004714.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.9 gi|312137377|ref|YP_004004714.1| - 0.079 12.7 2.4 0.2 11.4 0.2 2.3 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|312137377|ref|YP_004004714.1| - 0.083 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|312137377|ref|YP_004004714.1| - 0.094 12.8 0.3 0.092 12.8 0.3 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|312137377|ref|YP_004004714.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|312137377|ref|YP_004004714.1| - 0.17 11.6 0.1 0.32 10.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain PyrI PF01948.18 gi|312137378|ref|YP_004004715.1| - 2.7e-35 120.5 6.3 3.6e-35 120.1 6.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|312137378|ref|YP_004004715.1| - 2.1e-21 75.5 4.0 2.1e-21 75.5 4.0 1.9 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF465 PF04325.13 gi|312137378|ref|YP_004004715.1| - 0.071 13.2 1.5 0.1 12.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF465) HALZ PF02183.18 gi|312137378|ref|YP_004004715.1| - 0.11 12.7 0.2 2 8.7 0.0 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper SecD_SecF PF02355.16 gi|312137379|ref|YP_004004716.1| - 2e-20 73.0 10.1 3.4e-20 72.2 10.1 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|312137379|ref|YP_004004716.1| - 1.1e-07 31.1 0.3 2.3e-07 30.1 0.3 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|312137379|ref|YP_004004716.1| - 9.8e-07 28.0 5.2 1.5e-06 27.4 5.2 1.3 1 0 0 1 1 1 1 MMPL family ACR_tran PF00873.19 gi|312137379|ref|YP_004004716.1| - 0.023 12.4 5.5 0.032 11.9 5.5 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family UPF0154 PF03672.13 gi|312137379|ref|YP_004004716.1| - 0.18 11.9 0.4 0.57 10.2 0.4 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) SecD_SecF PF02355.16 gi|312137380|ref|YP_004004717.1| - 7.7e-41 139.6 14.4 1.4e-40 138.7 14.4 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|312137380|ref|YP_004004717.1| - 2.4e-06 26.8 0.2 7.3e-06 25.3 0.0 2.0 2 0 0 2 2 2 1 SecD/SecF GG Motif Patched PF02460.18 gi|312137380|ref|YP_004004717.1| - 2 6.4 21.7 3 5.8 20.1 1.8 1 1 0 1 1 1 0 Patched family DUF3671 PF12420.8 gi|312137380|ref|YP_004004717.1| - 2.4 8.2 13.6 4.2 7.5 5.6 2.9 1 1 1 2 2 2 0 Protein of unknown function Flavodoxin_5 PF12724.7 gi|312137381|ref|YP_004004718.1| - 1.7e-11 44.5 0.5 4e-05 23.9 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|312137381|ref|YP_004004718.1| - 2.9e-11 43.3 0.9 5.8e-05 22.8 0.2 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|312137381|ref|YP_004004718.1| - 8.1e-10 38.6 0.9 2.6e-08 33.7 0.9 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_1 PF00258.25 gi|312137381|ref|YP_004004718.1| - 4.3e-06 27.0 0.1 0.00013 22.2 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|312137381|ref|YP_004004718.1| - 0.00027 20.7 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Semialdhyde_dh PF01118.24 gi|312137382|ref|YP_004004719.1| - 3.2e-36 124.4 0.0 5.6e-36 123.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|312137382|ref|YP_004004719.1| - 1.3e-29 103.6 0.0 2.2e-29 102.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|312137382|ref|YP_004004719.1| - 0.00017 21.7 0.0 0.00079 19.5 0.0 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|312137382|ref|YP_004004719.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|312137382|ref|YP_004004719.1| - 0.012 16.5 0.0 0.023 15.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|312137382|ref|YP_004004719.1| - 0.017 15.6 0.0 0.043 14.3 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain CTP_transf_like PF01467.26 gi|312137383|ref|YP_004004720.1| - 1e-21 77.7 0.0 1.2e-21 77.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|312137383|ref|YP_004004720.1| - 0.0042 17.0 0.0 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 FAD synthetase Urm1 PF09138.11 gi|312137383|ref|YP_004004720.1| - 0.033 14.5 0.2 0.048 14.0 0.2 1.3 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Citrate_ly_lig PF08218.11 gi|312137383|ref|YP_004004720.1| - 0.083 12.6 0.5 0.76 9.4 0.2 2.0 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain His_biosynth PF00977.21 gi|312137384|ref|YP_004004721.1| - 6.2e-77 258.1 5.0 7e-77 257.9 5.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|312137384|ref|YP_004004721.1| - 7.8e-07 28.8 0.1 0.0041 16.5 0.0 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase NanE PF04131.14 gi|312137384|ref|YP_004004721.1| - 1.1e-06 27.9 1.0 0.0031 16.7 0.2 2.4 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.17 gi|312137384|ref|YP_004004721.1| - 1.2e-06 27.8 0.7 0.0029 16.8 0.1 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|312137384|ref|YP_004004721.1| - 1.7e-06 27.6 0.2 0.02 14.2 0.1 2.3 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|312137384|ref|YP_004004721.1| - 5.7e-06 25.8 1.2 0.0022 17.4 0.2 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|312137384|ref|YP_004004721.1| - 2.1e-05 24.0 2.1 0.01 15.2 0.2 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|312137384|ref|YP_004004721.1| - 0.00047 19.1 1.7 0.03 13.2 0.3 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain DHO_dh PF01180.21 gi|312137384|ref|YP_004004721.1| - 0.00058 19.2 1.8 0.0048 16.2 0.2 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|312137384|ref|YP_004004721.1| - 0.00093 18.3 1.3 0.065 12.2 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|312137384|ref|YP_004004721.1| - 0.001 18.3 0.1 0.013 14.7 0.1 2.4 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|312137384|ref|YP_004004721.1| - 0.016 14.3 0.2 0.66 8.9 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DHODB_Fe-S_bind PF10418.9 gi|312137385|ref|YP_004004722.1| - 2.5e-11 43.2 8.8 3.6e-11 42.7 8.0 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|312137385|ref|YP_004004722.1| - 3.4e-06 27.7 0.0 7.1e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|312137385|ref|YP_004004722.1| - 0.014 15.8 0.0 0.033 14.6 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|312137385|ref|YP_004004722.1| - 0.038 14.1 0.0 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain AI-2E_transport PF01594.16 gi|312137386|ref|YP_004004723.1| - 9.8e-45 153.1 42.0 1.4e-44 152.6 42.0 1.2 1 1 0 1 1 1 1 AI-2E family transporter UL41A PF17591.2 gi|312137386|ref|YP_004004723.1| - 2.6 8.2 6.5 0.66 10.1 0.2 3.1 3 0 0 3 3 3 0 Herpesvirus UL41A ATP_bind_3 PF01171.20 gi|312137387|ref|YP_004004724.1| - 1.3e-09 38.0 0.0 2.9e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|312137387|ref|YP_004004724.1| - 1.8e-06 28.1 0.0 2.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|312137387|ref|YP_004004724.1| - 5.1e-05 22.9 0.0 0.00043 19.9 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|312137387|ref|YP_004004724.1| - 0.00021 20.2 0.1 0.00073 18.4 0.1 1.9 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|312137387|ref|YP_004004724.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RecR PF02132.15 gi|312137387|ref|YP_004004724.1| - 0.23 11.1 7.2 0.11 12.0 1.1 2.8 3 0 0 3 3 3 0 RecR protein Baculo_p48 PF04878.13 gi|312137387|ref|YP_004004724.1| - 1.3 7.9 7.4 0.4 9.6 0.3 2.7 2 1 1 3 3 3 0 Baculovirus P48 protein C1_2 PF03107.16 gi|312137387|ref|YP_004004724.1| - 1.7 9.0 5.7 6.3 7.2 1.1 3.1 3 0 0 3 3 3 0 C1 domain DFP PF04127.15 gi|312137388|ref|YP_004004725.1| - 1.9e-53 181.1 0.9 3.6e-52 176.9 0.1 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|312137388|ref|YP_004004725.1| - 3.1e-33 114.8 1.0 7.2e-33 113.6 1.0 1.6 1 0 0 1 1 1 1 Flavoprotein FlpD PF02662.16 gi|312137388|ref|YP_004004725.1| - 0.023 14.7 0.0 9.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit DUF4065 PF13274.6 gi|312137388|ref|YP_004004725.1| - 0.68 10.8 7.7 1.6 9.6 1.8 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4065) KH_5 PF13184.6 gi|312137389|ref|YP_004004726.1| - 2.5e-13 49.9 8.4 1e-12 47.9 4.8 2.3 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_S7e PF01251.18 gi|312137389|ref|YP_004004726.1| - 6.4e-07 29.3 0.5 3.2e-06 27.0 0.3 2.0 1 1 0 2 2 2 1 Ribosomal protein S7e KH_1 PF00013.29 gi|312137389|ref|YP_004004726.1| - 0.00016 21.4 1.7 0.00016 21.4 1.7 1.9 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|312137389|ref|YP_004004726.1| - 0.0073 16.2 8.7 0.033 14.1 3.7 2.7 3 1 0 3 3 3 1 KH domain KH_2 PF07650.17 gi|312137389|ref|YP_004004726.1| - 0.014 15.2 8.8 0.014 15.2 8.8 2.1 2 1 0 2 2 2 0 KH domain Ribosomal_L13 PF00572.18 gi|312137389|ref|YP_004004726.1| - 0.016 15.5 0.2 0.045 14.0 0.1 1.7 2 1 0 2 2 2 0 Ribosomal protein L13 Lpp-LpqN PF10738.9 gi|312137390|ref|YP_004004727.1| - 0.00056 19.4 0.1 0.0007 19.1 0.1 1.1 1 0 0 1 1 1 1 Probable lipoprotein LpqN PsbP PF01789.16 gi|312137390|ref|YP_004004727.1| - 0.00097 19.3 0.2 0.0094 16.1 0.2 2.0 1 1 0 1 1 1 1 PsbP Myosin_N PF02736.19 gi|312137390|ref|YP_004004727.1| - 0.11 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain DUF4006 PF13179.6 gi|312137390|ref|YP_004004727.1| - 8.6 6.4 5.9 2.8 7.9 2.2 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF4006) GvpG PF05120.12 gi|312137391|ref|YP_004004728.1| - 0.023 14.7 1.9 0.076 13.0 1.9 1.8 1 1 0 1 1 1 0 Gas vesicle protein G CdvA PF18822.1 gi|312137391|ref|YP_004004728.1| - 0.028 14.2 2.3 0.028 14.2 2.3 2.4 1 1 1 2 2 2 0 CdvA-like coiled-coil domain ABC2_membrane_3 PF12698.7 gi|312137391|ref|YP_004004728.1| - 0.86 8.6 4.5 1.3 8.1 4.5 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF334 PF03904.13 gi|312137391|ref|YP_004004728.1| - 0.87 9.1 6.5 1.3 8.5 6.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF2113 PF09886.9 gi|312137392|ref|YP_004004729.1| - 4.2e-63 212.0 1.8 4.7e-63 211.9 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Radical_SAM PF04055.21 gi|312137393|ref|YP_004004730.1| - 1.8e-27 96.8 0.2 3.1e-27 96.0 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137393|ref|YP_004004730.1| - 3.2e-07 30.7 0.2 8.4e-07 29.3 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137393|ref|YP_004004730.1| - 1.3e-06 28.5 0.8 3.4e-06 27.2 0.3 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Rpr2 PF04032.16 gi|312137393|ref|YP_004004730.1| - 0.011 16.0 0.9 0.011 16.0 0.9 2.1 2 2 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2368 PF10166.9 gi|312137393|ref|YP_004004730.1| - 0.091 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) Peptidase_C93 PF06035.11 gi|312137393|ref|YP_004004730.1| - 0.13 12.0 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP Pox_F12L PF03337.13 gi|312137393|ref|YP_004004730.1| - 0.14 10.2 0.2 0.28 9.3 0.0 1.5 2 0 0 2 2 2 0 Poxvirus F12L protein Met_10 PF02475.16 gi|312137394|ref|YP_004004731.1| - 3.6e-74 248.8 2.5 5.3e-74 248.3 2.5 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|312137394|ref|YP_004004731.1| - 2.5e-16 59.3 4.7 2.5e-16 59.3 4.7 2.7 2 1 1 3 3 2 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|312137394|ref|YP_004004731.1| - 1.5e-09 37.6 0.0 2.8e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|312137394|ref|YP_004004731.1| - 1.6e-09 37.4 0.1 2.3e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|312137394|ref|YP_004004731.1| - 3.8e-09 36.4 0.0 6.9e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|312137394|ref|YP_004004731.1| - 1e-07 31.9 0.1 6.1e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312137394|ref|YP_004004731.1| - 1.7e-07 31.8 0.0 5.1e-07 30.3 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|312137394|ref|YP_004004731.1| - 3e-06 27.0 0.0 0.00013 21.6 0.0 2.4 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_15 PF09445.10 gi|312137394|ref|YP_004004731.1| - 7.9e-06 25.5 0.2 1.7e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|312137394|ref|YP_004004731.1| - 1.1e-05 25.1 0.1 3.9e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|312137394|ref|YP_004004731.1| - 2.6e-05 24.2 0.4 0.0001 22.3 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|312137394|ref|YP_004004731.1| - 3.8e-05 24.4 0.0 0.0008 20.1 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312137394|ref|YP_004004731.1| - 0.00015 21.2 0.2 0.00056 19.3 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DUF43 PF01861.16 gi|312137394|ref|YP_004004731.1| - 0.0014 17.9 2.5 0.0028 16.9 0.1 2.2 2 1 0 2 2 2 1 Branched-chain polyamine synthase A C-terminal domain ADH_zinc_N PF00107.26 gi|312137394|ref|YP_004004731.1| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FtsJ PF01728.19 gi|312137394|ref|YP_004004731.1| - 0.0067 16.6 0.0 0.039 14.1 0.0 2.1 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|312137394|ref|YP_004004731.1| - 0.0081 15.6 0.1 0.13 11.7 0.1 2.7 2 1 0 2 2 2 1 Putative methyltransferase PRMT5 PF05185.16 gi|312137394|ref|YP_004004731.1| - 0.0088 15.9 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_24 PF13578.6 gi|312137394|ref|YP_004004731.1| - 0.01 16.8 0.0 0.032 15.3 0.0 1.8 2 0 0 2 2 1 0 Methyltransferase domain AAA_31 PF13614.6 gi|312137394|ref|YP_004004731.1| - 0.012 15.5 6.0 0.32 10.9 2.0 2.5 2 0 0 2 2 2 0 AAA domain Methyltransf_23 PF13489.6 gi|312137394|ref|YP_004004731.1| - 0.02 14.7 0.0 0.053 13.4 0.0 1.8 2 1 0 2 2 2 0 Methyltransferase domain KHA PF11834.8 gi|312137394|ref|YP_004004731.1| - 0.031 14.4 0.7 0.2 11.7 0.2 2.3 2 0 0 2 2 2 0 KHA, dimerisation domain of potassium ion channel Methyltransf_11 PF08241.12 gi|312137394|ref|YP_004004731.1| - 0.033 14.8 0.0 0.13 12.9 0.0 2.1 2 1 0 2 2 1 0 Methyltransferase domain Spermine_synth PF01564.17 gi|312137394|ref|YP_004004731.1| - 0.04 13.3 0.3 0.04 13.3 0.3 2.2 2 1 0 2 2 2 0 Spermine/spermidine synthase domain Methyltransf_16 PF10294.9 gi|312137394|ref|YP_004004731.1| - 0.046 13.5 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase UPF0020 PF01170.18 gi|312137394|ref|YP_004004731.1| - 0.054 13.2 0.1 0.29 10.8 0.1 2.0 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 ATPgrasp_Ter PF15632.6 gi|312137394|ref|YP_004004731.1| - 0.07 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon IF-2B PF01008.17 gi|312137395|ref|YP_004004732.1| - 2.8e-82 276.1 0.6 4.3e-82 275.5 0.6 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family YokU PF14122.6 gi|312137395|ref|YP_004004732.1| - 0.13 12.2 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin TP_methylase PF00590.20 gi|312137396|ref|YP_004004733.1| - 1.5e-34 119.8 0.1 2.5e-34 119.1 0.0 1.4 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases zf-like PF04071.12 gi|312137396|ref|YP_004004733.1| - 5.7e-23 80.6 13.7 1.1e-22 79.7 13.7 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain DNA_pol_E_B PF04042.16 gi|312137398|ref|YP_004004735.1| - 1.7e-17 63.5 0.0 2.4e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|312137398|ref|YP_004004735.1| - 2.3e-13 51.1 0.1 4.1e-13 50.3 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|312137398|ref|YP_004004735.1| - 1e-08 35.5 0.0 3.3e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|312137398|ref|YP_004004735.1| - 9.9e-05 22.3 1.6 0.00026 20.9 1.6 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PIN_5 PF08745.11 gi|312137399|ref|YP_004004736.1| - 2.1e-90 301.7 0.2 2.4e-90 301.5 0.2 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Collectrin PF16959.5 gi|312137399|ref|YP_004004736.1| - 0.0037 17.0 0.2 0.042 13.6 0.0 2.0 1 1 1 2 2 2 1 Renal amino acid transporter tRNA-synt_His PF13393.6 gi|312137400|ref|YP_004004737.1| - 6.7e-69 232.5 0.0 8.9e-69 232.1 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|312137400|ref|YP_004004737.1| - 1.2e-21 76.6 0.9 2.6e-21 75.6 0.9 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|312137400|ref|YP_004004737.1| - 1.8e-16 60.6 0.1 4e-16 59.5 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|312137400|ref|YP_004004737.1| - 5.1e-07 29.5 0.1 7.7e-07 28.9 0.1 1.2 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs tRNA-synt_2 PF00152.20 gi|312137400|ref|YP_004004737.1| - 2.2e-06 27.0 4.0 0.00018 20.7 2.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|312137400|ref|YP_004004737.1| - 0.00014 21.4 0.0 0.00031 20.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) MA3 PF02847.17 gi|312137400|ref|YP_004004737.1| - 0.01 15.8 0.3 2 8.4 0.0 3.3 3 1 1 4 4 4 0 MA3 domain DUF5397 PF17375.2 gi|312137400|ref|YP_004004737.1| - 0.25 11.1 1.0 1.4 8.7 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5397) PRA-CH PF01502.18 gi|312137401|ref|YP_004004738.1| - 1.8e-36 123.8 2.6 2.6e-36 123.3 2.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SSE PF00437.20 gi|312137402|ref|YP_004004739.1| - 2.6e-11 43.1 0.1 6.3e-11 41.8 0.1 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|312137402|ref|YP_004004739.1| - 7.2e-11 42.7 0.0 2.5e-10 40.9 0.0 2.0 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|312137402|ref|YP_004004739.1| - 3.8e-08 33.0 1.0 1.4e-07 31.2 1.0 2.0 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|312137402|ref|YP_004004739.1| - 2.4e-05 24.1 1.7 0.03 14.2 0.1 3.3 2 0 0 2 2 2 2 KH domain AAA_18 PF13238.6 gi|312137402|ref|YP_004004739.1| - 0.00023 21.7 0.0 0.001 19.6 0.0 2.2 2 0 0 2 2 1 1 AAA domain ABC_tran PF00005.27 gi|312137402|ref|YP_004004739.1| - 0.00042 20.8 0.0 0.0017 18.9 0.0 2.0 2 0 0 2 2 1 1 ABC transporter PIN_4 PF13638.6 gi|312137402|ref|YP_004004739.1| - 0.00048 20.4 2.2 0.00065 20.0 0.0 2.3 3 0 0 3 3 2 1 PIN domain AAA_22 PF13401.6 gi|312137402|ref|YP_004004739.1| - 0.00052 20.3 0.0 0.027 14.7 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|312137402|ref|YP_004004739.1| - 0.0011 18.9 0.0 0.0045 17.0 0.0 2.1 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) KH_2 PF07650.17 gi|312137402|ref|YP_004004739.1| - 0.0012 18.6 3.3 0.0012 18.6 3.3 2.7 2 0 0 2 2 2 1 KH domain Thymidylate_kin PF02223.17 gi|312137402|ref|YP_004004739.1| - 0.0013 18.4 0.0 0.0073 16.0 0.0 2.3 2 1 1 3 3 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|312137402|ref|YP_004004739.1| - 0.0025 18.2 0.0 0.005 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain KH_5 PF13184.6 gi|312137402|ref|YP_004004739.1| - 0.0049 16.9 0.7 0.021 14.9 0.7 2.2 1 0 0 1 1 1 1 NusA-like KH domain AAA PF00004.29 gi|312137402|ref|YP_004004739.1| - 0.0059 17.0 0.0 0.016 15.7 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PIN_9 PF18477.1 gi|312137402|ref|YP_004004739.1| - 0.0059 16.9 0.3 0.94 9.8 0.4 3.3 2 1 0 2 2 1 1 PIN like domain RuvB_N PF05496.12 gi|312137402|ref|YP_004004739.1| - 0.006 16.3 0.1 0.021 14.5 0.0 2.0 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|312137402|ref|YP_004004739.1| - 0.0075 16.0 0.0 0.059 13.1 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain Sigma54_activat PF00158.26 gi|312137402|ref|YP_004004739.1| - 0.0083 15.8 0.0 0.033 13.9 0.0 2.0 3 0 0 3 3 1 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|312137402|ref|YP_004004739.1| - 0.011 15.5 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|312137402|ref|YP_004004739.1| - 0.015 15.7 0.0 0.16 12.4 0.0 2.9 2 1 1 3 3 2 0 AAA domain ATP_bind_1 PF03029.17 gi|312137402|ref|YP_004004739.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|312137402|ref|YP_004004739.1| - 0.019 14.9 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|312137402|ref|YP_004004739.1| - 0.021 15.0 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|312137402|ref|YP_004004739.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein VASP_tetra PF08776.11 gi|312137402|ref|YP_004004739.1| - 0.024 14.2 0.2 0.024 14.2 0.2 2.6 3 0 0 3 3 1 0 VASP tetramerisation domain Rad17 PF03215.15 gi|312137402|ref|YP_004004739.1| - 0.027 14.4 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|312137402|ref|YP_004004739.1| - 0.028 13.7 0.0 0.068 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|312137402|ref|YP_004004739.1| - 0.038 14.0 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|312137402|ref|YP_004004739.1| - 0.048 14.0 0.0 0.14 12.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|312137402|ref|YP_004004739.1| - 0.049 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|312137402|ref|YP_004004739.1| - 0.052 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|312137402|ref|YP_004004739.1| - 0.059 12.9 0.0 0.29 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|312137402|ref|YP_004004739.1| - 0.064 12.6 0.0 0.23 10.8 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|312137402|ref|YP_004004739.1| - 0.076 13.0 0.1 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|312137402|ref|YP_004004739.1| - 0.089 12.9 0.0 0.35 11.0 0.0 2.1 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|312137402|ref|YP_004004739.1| - 0.74 10.3 0.0 0.74 10.3 0.0 3.0 3 1 0 3 3 3 0 AAA domain AP_endonuc_2 PF01261.24 gi|312137403|ref|YP_004004740.1| - 5.1e-19 68.5 0.1 6.9e-19 68.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AMP-binding_C_2 PF14535.6 gi|312137403|ref|YP_004004740.1| - 0.084 13.2 0.8 2.5 8.5 0.2 2.9 2 1 0 2 2 2 0 AMP-binding enzyme C-terminal domain F420_oxidored PF03807.17 gi|312137404|ref|YP_004004741.1| - 1.1e-21 77.2 1.4 2.2e-21 76.2 1.4 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|312137404|ref|YP_004004741.1| - 5.1e-08 32.7 0.6 2.6e-07 30.3 0.3 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|312137404|ref|YP_004004741.1| - 6.4e-06 26.4 0.4 3.3e-05 24.1 0.1 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|312137404|ref|YP_004004741.1| - 4.5e-05 23.1 0.3 0.0001 22.0 0.3 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|312137404|ref|YP_004004741.1| - 0.0002 20.4 0.3 0.00031 19.8 0.3 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|312137404|ref|YP_004004741.1| - 0.00048 20.5 0.6 0.0023 18.4 0.1 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.13 gi|312137404|ref|YP_004004741.1| - 0.0005 19.7 0.4 0.0011 18.6 0.4 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|312137404|ref|YP_004004741.1| - 0.0021 17.5 0.1 0.0032 16.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|312137404|ref|YP_004004741.1| - 0.0023 17.9 0.7 0.017 15.1 0.7 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|312137404|ref|YP_004004741.1| - 0.0041 17.4 0.2 0.0083 16.4 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|312137404|ref|YP_004004741.1| - 0.016 14.7 0.4 0.016 14.7 0.4 2.0 2 1 0 2 2 2 0 short chain dehydrogenase 3HCDH_N PF02737.18 gi|312137404|ref|YP_004004741.1| - 0.019 14.9 0.5 0.036 14.0 0.5 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_tran_WecB PF03808.13 gi|312137404|ref|YP_004004741.1| - 0.056 13.4 0.0 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Rossmann-like PF10727.9 gi|312137404|ref|YP_004004741.1| - 0.061 13.2 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Rossmann-like domain TrkA_N PF02254.18 gi|312137404|ref|YP_004004741.1| - 0.12 12.6 2.5 0.095 13.0 0.8 1.7 2 0 0 2 2 2 0 TrkA-N domain PTS_IIB PF02302.17 gi|312137404|ref|YP_004004741.1| - 0.46 11.2 4.9 0.65 10.7 0.6 2.4 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit SIS PF01380.22 gi|312137405|ref|YP_004004742.1| - 1.2e-18 67.2 0.1 1.8e-18 66.6 0.1 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|312137405|ref|YP_004004742.1| - 1.8e-09 37.8 1.0 8.3e-05 22.6 0.1 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.19 gi|312137405|ref|YP_004004742.1| - 0.035 13.4 1.6 0.049 13.0 1.0 1.5 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PRMT5 PF05185.16 gi|312137405|ref|YP_004004742.1| - 0.079 12.8 0.4 0.39 10.5 0.1 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase StbA PF06406.11 gi|312137405|ref|YP_004004742.1| - 0.083 12.1 1.0 0.11 11.7 1.0 1.2 1 0 0 1 1 1 0 StbA protein ORC2 PF04084.14 gi|312137405|ref|YP_004004742.1| - 0.13 11.2 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 2 tRNA_int_endo PF01974.17 gi|312137406|ref|YP_004004743.1| - 2e-32 111.1 1.8 2.9e-32 110.6 1.4 1.4 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|312137406|ref|YP_004004743.1| - 8.9e-15 54.1 0.0 1.8e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain HU-HIG PF18291.1 gi|312137406|ref|YP_004004743.1| - 0.028 14.5 0.1 0.05 13.7 0.1 1.4 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif Sen15 PF09631.10 gi|312137406|ref|YP_004004743.1| - 0.072 13.4 0.3 0.5 10.7 0.1 2.0 1 1 1 2 2 2 0 Sen15 protein tRNA-synt_1b PF00579.25 gi|312137407|ref|YP_004004744.1| - 4.7e-58 196.8 0.0 5.9e-58 196.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|312137407|ref|YP_004004744.1| - 0.056 12.3 0.4 0.22 10.4 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class I (K) SR1P PF13790.6 gi|312137407|ref|YP_004004744.1| - 2.3 8.4 6.9 22 5.2 5.8 2.3 1 1 1 2 2 2 0 SR1 protein SpoIIM PF01944.17 gi|312137408|ref|YP_004004745.1| - 1.3e-26 93.5 18.3 1.7e-26 93.1 18.3 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF4337 PF14235.6 gi|312137408|ref|YP_004004745.1| - 0.5 10.5 1.8 1.5 8.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) PALP PF00291.25 gi|312137409|ref|YP_004004746.1| - 1.6e-78 264.1 0.0 1.9e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|312137409|ref|YP_004004746.1| - 0.03 13.8 3.2 0.067 12.7 3.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.12 gi|312137409|ref|YP_004004746.1| - 0.045 13.4 2.6 0.59 9.8 0.1 2.6 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain C1_2 PF03107.16 gi|312137409|ref|YP_004004746.1| - 0.051 13.9 0.6 0.1 13.0 0.6 1.5 1 0 0 1 1 1 0 C1 domain zinc_ribbon_12 PF11331.8 gi|312137409|ref|YP_004004746.1| - 0.087 12.7 1.0 2.2 8.2 0.0 2.9 3 0 0 3 3 3 0 Probable zinc-ribbon domain HypA PF01155.19 gi|312137409|ref|YP_004004746.1| - 0.11 12.6 0.3 0.22 11.5 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|312137409|ref|YP_004004746.1| - 0.14 12.1 1.3 0.33 10.9 1.3 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 CBFD_NFYB_HMF PF00808.23 gi|312137410|ref|YP_004004747.1| - 2.3e-22 79.1 0.6 2.5e-22 78.9 0.6 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|312137410|ref|YP_004004747.1| - 9.1e-11 42.2 0.2 1.1e-10 42.0 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|312137410|ref|YP_004004747.1| - 4.3e-06 26.8 0.0 4.6e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|312137410|ref|YP_004004747.1| - 9.2e-06 26.0 0.0 9.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|312137410|ref|YP_004004747.1| - 9.4e-06 25.7 0.3 1e-05 25.6 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|312137410|ref|YP_004004747.1| - 0.00087 19.4 0.0 0.0011 19.1 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|312137410|ref|YP_004004747.1| - 0.0011 19.4 0.2 0.0014 19.1 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|312137410|ref|YP_004004747.1| - 0.0033 17.4 0.1 0.0035 17.3 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit Arginase PF00491.21 gi|312137411|ref|YP_004004748.1| - 2.9e-73 246.8 0.0 3.3e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 gi|312137411|ref|YP_004004748.1| - 0.00085 19.6 0.0 0.0014 18.9 0.0 1.3 1 0 0 1 1 1 1 UPF0489 domain Glyco_transf_10 PF00852.19 gi|312137411|ref|YP_004004748.1| - 0.083 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 10 (fucosyltransferase) C-term eIF-5a PF01287.20 gi|312137412|ref|YP_004004749.1| - 6.2e-12 45.4 0.4 9.9e-12 44.8 0.4 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|312137412|ref|YP_004004749.1| - 0.0043 17.0 0.5 0.0089 16.0 0.2 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|312137412|ref|YP_004004749.1| - 0.0069 16.4 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PvlArgDC PF01862.16 gi|312137413|ref|YP_004004750.1| - 6.2e-41 139.9 0.5 6.9e-41 139.8 0.5 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Rap1a PF18602.1 gi|312137413|ref|YP_004004750.1| - 0.08 13.3 0.1 1.7 9.0 0.0 2.1 2 0 0 2 2 2 0 Rap1a immunity proteins Inositol_P PF00459.25 gi|312137414|ref|YP_004004751.1| - 8e-34 117.4 0.0 9.5e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|312137414|ref|YP_004004751.1| - 1.7e-05 24.4 0.0 2.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain NAD_kinase PF01513.21 gi|312137415|ref|YP_004004752.1| - 8.4e-67 225.4 1.0 2.6e-66 223.8 1.0 1.7 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|312137415|ref|YP_004004752.1| - 0.0025 17.4 0.1 0.005 16.5 0.1 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Mur_ligase_M PF08245.12 gi|312137416|ref|YP_004004753.1| - 2.3e-08 34.3 0.2 5.4e-08 33.0 0.2 1.7 1 0 0 1 1 1 1 Mur ligase middle domain Porphobil_deam PF01379.20 gi|312137417|ref|YP_004004754.1| - 4e-72 242.0 0.0 5.4e-72 241.6 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|312137417|ref|YP_004004754.1| - 2.1e-18 66.5 0.1 4.9e-18 65.3 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|312137418|ref|YP_004004755.1| - 9.9e-33 113.5 0.4 1.7e-32 112.8 0.4 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|312137418|ref|YP_004004755.1| - 6.9e-07 29.3 0.0 1.5e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|312137418|ref|YP_004004755.1| - 0.00026 21.2 0.3 0.00052 20.2 0.3 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.19 gi|312137418|ref|YP_004004755.1| - 0.021 15.5 1.1 0.036 14.7 0.2 1.8 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.16 gi|312137418|ref|YP_004004755.1| - 0.03 15.0 0.1 0.051 14.2 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.12 gi|312137418|ref|YP_004004755.1| - 0.043 13.4 0.2 0.071 12.7 0.2 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|312137418|ref|YP_004004755.1| - 0.1 11.9 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|312137418|ref|YP_004004755.1| - 0.11 13.3 0.4 0.86 10.3 0.1 2.5 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Pribosyltran PF00156.27 gi|312137419|ref|YP_004004756.1| - 1.2e-16 60.6 1.8 1.9e-16 60.0 1.8 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|312137419|ref|YP_004004756.1| - 7.6e-05 22.2 0.1 0.0001 21.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_11 PF08279.12 gi|312137419|ref|YP_004004756.1| - 0.00083 19.3 0.3 0.016 15.1 0.1 2.6 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|312137419|ref|YP_004004756.1| - 0.00097 18.9 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.6 gi|312137419|ref|YP_004004756.1| - 0.001 18.6 0.2 0.002 17.7 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase HTH_10 PF04967.12 gi|312137419|ref|YP_004004756.1| - 0.002 17.9 0.0 0.0039 17.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|312137419|ref|YP_004004756.1| - 0.0068 15.9 0.0 0.026 14.1 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|312137419|ref|YP_004004756.1| - 0.011 15.2 0.1 0.021 14.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.7 gi|312137419|ref|YP_004004756.1| - 0.019 15.2 0.1 0.066 13.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Pribosyl_synth PF14572.6 gi|312137419|ref|YP_004004756.1| - 0.026 14.5 1.3 0.04 13.9 1.2 1.4 1 1 0 1 1 1 0 Phosphoribosyl synthetase-associated domain HTH_7 PF02796.15 gi|312137419|ref|YP_004004756.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Nucleo_LEF-12 PF06256.11 gi|312137419|ref|YP_004004756.1| - 0.092 12.5 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 Nucleopolyhedrovirus LEF-12 protein HTH_29 PF13551.6 gi|312137419|ref|YP_004004756.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.6 gi|312137419|ref|YP_004004756.1| - 0.12 12.0 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|312137419|ref|YP_004004756.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|312137419|ref|YP_004004756.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|312137419|ref|YP_004004756.1| - 0.16 12.1 0.1 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1727 PF08353.10 gi|312137420|ref|YP_004004757.1| - 5e-39 132.6 0.2 2.5e-38 130.4 0.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1727) Mur_ligase_M PF08245.12 gi|312137420|ref|YP_004004757.1| - 1.9e-21 76.9 0.1 5.4e-19 68.9 0.1 2.4 1 1 0 1 1 1 1 Mur ligase middle domain Vps36-NZF-N PF16988.5 gi|312137420|ref|YP_004004757.1| - 0.018 14.4 0.0 0.049 13.0 0.0 1.7 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DZR PF12773.7 gi|312137420|ref|YP_004004757.1| - 0.022 14.8 0.3 0.046 13.7 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|312137420|ref|YP_004004757.1| - 0.046 13.4 8.1 0.65 9.8 0.3 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|312137420|ref|YP_004004757.1| - 0.048 13.6 1.6 0.093 12.7 1.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|312137420|ref|YP_004004757.1| - 0.056 13.4 1.6 0.23 11.4 1.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|312137420|ref|YP_004004757.1| - 0.086 13.0 1.8 12 6.1 0.5 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|312137420|ref|YP_004004757.1| - 0.22 11.0 4.2 2.4 7.7 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|312137420|ref|YP_004004757.1| - 0.4 10.4 6.1 1.2 8.9 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|312137420|ref|YP_004004757.1| - 0.96 9.2 7.4 3.5 7.4 0.2 3.2 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein GATase_3 PF07685.14 gi|312137421|ref|YP_004004758.1| - 3.5e-39 134.4 0.0 4.5e-39 134.1 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|312137421|ref|YP_004004758.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_5 PF13507.6 gi|312137421|ref|YP_004004758.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|312137421|ref|YP_004004758.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Carb_kinase PF01256.17 gi|312137422|ref|YP_004004759.1| - 2.4e-66 223.7 0.0 3.2e-66 223.3 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|312137422|ref|YP_004004759.1| - 5.1e-47 159.9 0.0 8.1e-47 159.3 0.0 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|312137422|ref|YP_004004759.1| - 0.00011 21.7 0.0 0.00024 20.6 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|312137422|ref|YP_004004759.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase BofA PF07441.11 gi|312137423|ref|YP_004004760.1| - 1e-10 41.6 23.3 1.4e-10 41.2 23.3 1.3 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Arginosuc_synth PF00764.19 gi|312137424|ref|YP_004004761.1| - 4.9e-174 579.1 2.9 5.6e-174 579.0 2.9 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|312137424|ref|YP_004004761.1| - 1.1e-05 25.1 0.1 4.3e-05 23.1 0.1 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|312137424|ref|YP_004004761.1| - 0.00071 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|312137424|ref|YP_004004761.1| - 0.00092 19.0 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|312137424|ref|YP_004004761.1| - 0.0034 16.2 0.2 0.0059 15.4 0.2 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|312137424|ref|YP_004004761.1| - 0.0061 16.3 0.1 0.019 14.7 0.1 2.1 1 1 0 1 1 1 1 PP-loop family AstE_AspA PF04952.14 gi|312137425|ref|YP_004004762.1| - 4e-12 45.8 0.1 1.1e-11 44.4 0.1 1.8 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|312137425|ref|YP_004004762.1| - 0.018 14.5 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic DUF5507 PF17612.2 gi|312137425|ref|YP_004004762.1| - 0.031 14.0 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5507) YdjM PF04307.14 gi|312137426|ref|YP_004004763.1| - 5.5e-22 77.9 0.2 1.2e-21 76.8 0.2 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|312137426|ref|YP_004004763.1| - 0.0019 18.2 0.1 0.088 12.8 0.0 2.2 2 0 0 2 2 2 1 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|312137426|ref|YP_004004763.1| - 0.016 14.9 14.5 0.19 11.4 14.1 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) DUF2715 PF10895.8 gi|312137426|ref|YP_004004763.1| - 0.15 11.7 1.6 0.21 11.2 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2715) DUF5612 PF18462.1 gi|312137427|ref|YP_004004764.1| - 9.7e-75 249.2 7.5 9.7e-75 249.2 7.5 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|312137427|ref|YP_004004764.1| - 4e-09 36.1 0.3 2.3e-08 33.6 0.1 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|312137427|ref|YP_004004764.1| - 3.4e-08 34.0 2.0 3.4e-08 34.0 2.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|312137427|ref|YP_004004764.1| - 0.0013 18.7 0.0 0.0051 16.8 0.0 2.0 2 0 0 2 2 2 1 ACT domain StbA PF06406.11 gi|312137427|ref|YP_004004764.1| - 0.0017 17.6 0.6 0.0032 16.8 0.6 1.4 1 0 0 1 1 1 1 StbA protein ACT_7 PF13840.6 gi|312137427|ref|YP_004004764.1| - 0.0085 15.9 0.8 0.036 13.9 0.1 2.4 2 1 0 2 2 2 1 ACT domain ACT_5 PF13710.6 gi|312137427|ref|YP_004004764.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 ACT domain DUF1529 PF07485.11 gi|312137427|ref|YP_004004764.1| - 0.071 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1259) Ribonuc_red_lgC PF02867.15 gi|312137428|ref|YP_004004765.1| - 3.1e-168 560.6 0.0 4.9e-167 556.6 0.0 2.2 2 1 0 2 2 2 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|312137428|ref|YP_004004765.1| - 2e-27 95.0 0.1 4.8e-27 93.8 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Intein_splicing PF14890.6 gi|312137428|ref|YP_004004765.1| - 3.1e-13 49.8 0.0 1.6e-12 47.6 0.0 2.2 2 1 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|312137428|ref|YP_004004765.1| - 0.006 16.9 0.1 0.02 15.2 0.1 1.9 1 0 0 1 1 1 1 LAGLIDADG-like domain NRDD PF13597.6 gi|312137428|ref|YP_004004765.1| - 0.049 12.4 0.1 0.14 10.9 0.1 1.7 1 1 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Creatininase PF02633.14 gi|312137429|ref|YP_004004766.1| - 1.1e-14 54.6 0.0 1.4e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase PUA PF01472.20 gi|312137430|ref|YP_004004767.1| - 2.4e-22 78.7 1.8 2.4e-22 78.7 1.8 1.7 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|312137430|ref|YP_004004767.1| - 7.1e-20 71.1 6.0 1.3e-19 70.3 6.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|312137430|ref|YP_004004767.1| - 0.00069 19.8 3.3 0.00069 19.8 0.2 2.3 2 1 1 3 3 3 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|312137430|ref|YP_004004767.1| - 0.021 15.5 2.2 0.2 12.4 2.2 2.2 1 1 0 1 1 1 0 Pre-PUA-like domain Shikimate_dh_N PF08501.11 gi|312137431|ref|YP_004004768.1| - 2.5e-31 107.7 0.1 6.9e-31 106.3 0.0 1.8 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|312137431|ref|YP_004004768.1| - 4.7e-16 58.2 0.4 9.5e-16 57.3 0.4 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|312137431|ref|YP_004004768.1| - 5e-15 55.8 0.8 8.3e-15 55.1 0.8 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|312137431|ref|YP_004004768.1| - 2.5e-06 27.0 0.5 3.8e-06 26.3 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|312137431|ref|YP_004004768.1| - 2.9e-06 27.8 0.2 5.8e-06 26.8 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|312137431|ref|YP_004004768.1| - 9e-06 26.0 0.2 1.6e-05 25.2 0.2 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|312137431|ref|YP_004004768.1| - 0.0028 17.0 1.2 0.0091 15.4 0.5 1.9 1 1 1 2 2 2 1 ThiF family Staph_opine_DH PF10100.9 gi|312137431|ref|YP_004004768.1| - 0.0053 15.4 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 Staphylopine dehydrogenase NAD_binding_7 PF13241.6 gi|312137431|ref|YP_004004768.1| - 0.0071 16.8 0.1 0.015 15.7 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding PglD_N PF17836.1 gi|312137431|ref|YP_004004768.1| - 0.022 15.4 1.7 0.11 13.1 0.2 2.5 2 0 0 2 2 2 0 PglD N-terminal domain ApbA PF02558.16 gi|312137431|ref|YP_004004768.1| - 0.034 13.8 0.1 0.063 12.9 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|312137431|ref|YP_004004768.1| - 0.045 13.1 0.1 0.078 12.3 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fer4 PF00037.27 gi|312137432|ref|YP_004004769.1| - 2.1e-14 52.6 12.9 6.8e-07 28.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|312137432|ref|YP_004004769.1| - 2.1e-06 28.5 16.5 0.0026 18.7 4.8 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|312137432|ref|YP_004004769.1| - 3.6e-06 27.5 16.5 7.3e-06 26.5 15.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137432|ref|YP_004004769.1| - 4.4e-06 26.5 17.5 1e-05 25.4 1.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|312137432|ref|YP_004004769.1| - 7.2e-06 26.0 15.7 1.1e-05 25.5 15.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|312137432|ref|YP_004004769.1| - 5.8e-05 22.9 18.6 0.00038 20.4 2.8 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137432|ref|YP_004004769.1| - 0.00015 21.8 19.5 0.0017 18.4 3.7 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137432|ref|YP_004004769.1| - 0.00021 21.4 29.2 0.0017 18.5 15.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312137432|ref|YP_004004769.1| - 0.001 19.6 15.6 0.053 14.1 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137432|ref|YP_004004769.1| - 0.014 15.9 20.4 0.018 15.5 2.9 2.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|312137432|ref|YP_004004769.1| - 0.021 15.3 19.4 0.15 12.6 4.1 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137432|ref|YP_004004769.1| - 0.021 15.7 24.1 0.027 15.4 3.2 3.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|312137432|ref|YP_004004769.1| - 0.044 14.0 3.2 0.044 14.0 3.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|312137432|ref|YP_004004769.1| - 2.1 9.2 10.7 1.9 9.3 0.7 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|312137432|ref|YP_004004769.1| - 6.6 7.3 16.5 0.61 10.7 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|312137433|ref|YP_004004770.1| - 4.6e-19 68.9 0.7 3.9e-18 65.8 0.7 2.1 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|312137433|ref|YP_004004770.1| - 1.7e-09 37.1 0.2 4.8e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|312137433|ref|YP_004004770.1| - 6e-09 35.4 0.0 2e-08 33.7 0.0 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|312137433|ref|YP_004004770.1| - 2.7e-08 33.8 1.1 0.00054 19.6 0.5 2.5 1 1 2 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|312137433|ref|YP_004004770.1| - 6.1e-08 31.8 5.1 3.4e-07 29.3 0.5 2.9 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|312137433|ref|YP_004004770.1| - 2.5e-07 30.4 2.2 3.3e-07 30.0 1.6 1.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|312137433|ref|YP_004004770.1| - 3.1e-07 29.8 0.5 6.3e-07 28.8 0.5 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|312137433|ref|YP_004004770.1| - 1.4e-05 24.5 4.9 4.9e-05 22.7 3.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|312137433|ref|YP_004004770.1| - 3.8e-05 23.0 0.1 3.8e-05 23.0 0.1 2.5 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|312137433|ref|YP_004004770.1| - 4.5e-05 23.6 0.1 0.00031 20.9 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|312137433|ref|YP_004004770.1| - 0.00089 18.6 0.9 0.005 16.1 0.1 2.2 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|312137433|ref|YP_004004770.1| - 0.0015 17.9 0.1 0.0031 16.8 0.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|312137433|ref|YP_004004770.1| - 0.013 16.0 1.1 0.062 13.7 1.1 2.3 1 1 0 1 1 1 0 Putative NAD(P)-binding SE PF08491.10 gi|312137433|ref|YP_004004770.1| - 0.022 13.8 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox_3 PF13738.6 gi|312137433|ref|YP_004004770.1| - 0.062 12.5 2.3 0.64 9.2 2.1 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Retrotran_gag_2 PF14223.6 gi|312137433|ref|YP_004004770.1| - 0.094 12.4 0.6 0.19 11.4 0.6 1.5 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Pyr_redox PF00070.27 gi|312137433|ref|YP_004004770.1| - 0.097 13.2 0.1 0.097 13.2 0.1 2.8 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|312137433|ref|YP_004004770.1| - 0.11 11.8 0.0 2 7.7 0.1 2.3 1 1 1 2 2 2 0 ThiF family 3HCDH_N PF02737.18 gi|312137433|ref|YP_004004770.1| - 0.12 12.3 2.1 0.14 12.1 0.1 2.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain G2F PF07474.12 gi|312137433|ref|YP_004004770.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 G2F domain DUF1492 PF07374.11 gi|312137433|ref|YP_004004770.1| - 0.16 12.2 3.7 0.25 11.5 0.3 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF1492) Adenosine_kin PF04008.14 gi|312137434|ref|YP_004004771.1| - 2e-76 255.0 1.5 2.2e-76 254.9 1.5 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Radical_SAM PF04055.21 gi|312137435|ref|YP_004004772.1| - 6.3e-09 36.4 0.6 2e-08 34.8 0.2 2.0 3 0 0 3 3 3 1 Radical SAM superfamily BATS PF06968.13 gi|312137435|ref|YP_004004772.1| - 0.0029 17.7 0.0 0.0087 16.2 0.0 1.8 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain XTBD PF11952.8 gi|312137435|ref|YP_004004772.1| - 0.063 13.0 0.0 2.2 8.1 0.0 2.4 2 0 0 2 2 2 0 XRN-Two Binding Domain, XTBD NKAIN PF05640.14 gi|312137435|ref|YP_004004772.1| - 0.085 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein GatB_N PF02934.15 gi|312137436|ref|YP_004004773.1| - 6.3e-89 298.0 0.0 9.2e-89 297.5 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|312137436|ref|YP_004004773.1| - 2e-43 147.8 7.7 4.4e-43 146.7 7.7 1.6 1 0 0 1 1 1 1 GatB domain Mu-like_Pro PF10123.9 gi|312137436|ref|YP_004004773.1| - 0.086 12.4 1.0 0.47 9.9 0.5 2.0 2 0 0 2 2 2 0 Mu-like prophage I protein MJ1316 PF04457.12 gi|312137437|ref|YP_004004774.1| - 4.3e-14 53.0 0.1 4.8e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain CBS PF00571.28 gi|312137438|ref|YP_004004775.1| - 4e-30 104.0 10.1 1.3e-15 57.5 1.8 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|312137438|ref|YP_004004775.1| - 2.7e-14 53.2 0.1 5.9e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|312137438|ref|YP_004004775.1| - 0.0082 16.2 1.5 0.046 13.8 1.5 2.3 1 1 0 1 1 1 1 Putative ParB-like nuclease Hyd_WA PF06462.12 gi|312137438|ref|YP_004004775.1| - 0.13 12.2 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Propeller HNH_3 PF13392.6 gi|312137438|ref|YP_004004775.1| - 0.24 11.2 1.3 0.44 10.3 1.3 1.5 1 0 0 1 1 1 0 HNH endonuclease PRA-PH PF01503.17 gi|312137439|ref|YP_004004776.1| - 2.5e-15 56.7 0.2 2.9e-15 56.5 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|312137439|ref|YP_004004776.1| - 9.3e-05 22.5 1.6 0.00015 21.9 1.6 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain AIRC PF00731.20 gi|312137440|ref|YP_004004777.1| - 2.3e-22 79.1 2.6 8.9e-22 77.3 2.3 1.8 2 0 0 2 2 2 1 AIR carboxylase Sua5_yciO_yrdC PF01300.18 gi|312137441|ref|YP_004004778.1| - 2e-47 161.0 0.0 3.4e-47 160.3 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|312137441|ref|YP_004004778.1| - 1.9e-33 113.9 16.9 2.6e-17 62.3 4.3 2.8 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|312137441|ref|YP_004004778.1| - 6.9e-31 107.0 0.3 2e-30 105.5 0.4 1.8 2 0 0 2 2 2 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|312137441|ref|YP_004004778.1| - 1.6e-22 79.7 0.0 3.8e-22 78.5 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|312137441|ref|YP_004004778.1| - 0.00018 21.3 0.6 0.026 14.2 0.1 2.4 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.20 gi|312137441|ref|YP_004004778.1| - 0.0047 16.4 0.1 0.01 15.4 0.1 1.5 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family CitX PF03802.14 gi|312137441|ref|YP_004004778.1| - 0.018 14.8 0.1 0.081 12.7 0.0 2.1 2 0 0 2 2 2 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DUF3970 PF13113.6 gi|312137441|ref|YP_004004778.1| - 0.049 13.9 1.6 10 6.4 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3970) Carbam_trans_N PF02543.15 gi|312137441|ref|YP_004004778.1| - 0.16 11.6 2.2 0.96 9.0 2.2 2.0 1 1 0 1 1 1 0 Carbamoyltransferase N-terminus Zn-ribbon_8 PF09723.10 gi|312137441|ref|YP_004004778.1| - 0.5 10.5 10.6 9.3 6.5 4.8 3.3 3 0 0 3 3 3 0 Zinc ribbon domain CagY_M PF07337.11 gi|312137441|ref|YP_004004778.1| - 3.7 7.3 7.0 1.2 8.8 0.5 2.6 2 0 0 2 2 2 0 DC-EC Repeat NMD3 PF04981.13 gi|312137441|ref|YP_004004778.1| - 4.9 6.5 7.9 4.7 6.6 5.1 2.3 1 1 1 2 2 2 0 NMD3 family HTH_5 PF01022.20 gi|312137442|ref|YP_004004779.1| - 7.4e-14 51.4 0.1 1.4e-13 50.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|312137442|ref|YP_004004779.1| - 3e-10 40.0 0.0 5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|312137442|ref|YP_004004779.1| - 1.2e-05 25.2 0.1 5.9e-05 23.0 0.1 2.1 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family ArsR PF09824.9 gi|312137442|ref|YP_004004779.1| - 4.8e-05 23.0 0.8 6.5e-05 22.6 0.8 1.2 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_24 PF13412.6 gi|312137442|ref|YP_004004779.1| - 5.5e-05 22.6 0.8 0.00074 19.0 0.8 2.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|312137442|ref|YP_004004779.1| - 0.0011 18.8 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|312137442|ref|YP_004004779.1| - 0.0015 18.4 0.1 0.0044 16.9 0.1 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|312137442|ref|YP_004004779.1| - 0.0076 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family CAP59_mtransfer PF11735.8 gi|312137442|ref|YP_004004779.1| - 0.015 15.0 0.7 0.017 14.8 0.7 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 HTH_34 PF13601.6 gi|312137442|ref|YP_004004779.1| - 0.016 15.3 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|312137442|ref|YP_004004779.1| - 0.019 14.7 0.2 0.066 13.0 0.1 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_CodY PF08222.11 gi|312137442|ref|YP_004004779.1| - 0.02 14.4 0.0 0.062 12.9 0.0 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|312137442|ref|YP_004004779.1| - 0.026 14.9 0.2 0.085 13.2 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 gi|312137442|ref|YP_004004779.1| - 0.03 14.8 0.6 0.069 13.6 0.1 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|312137442|ref|YP_004004779.1| - 0.069 13.0 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF1349 PF07081.11 gi|312137442|ref|YP_004004779.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) CHB_HEX_C_1 PF13290.6 gi|312137443|ref|YP_004004780.1| - 7.6e-20 70.7 10.8 8.8e-12 44.9 1.8 2.3 2 0 0 2 2 2 2 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 gi|312137443|ref|YP_004004780.1| - 1.3e-18 66.9 20.5 7.2e-13 48.5 2.7 2.7 3 0 0 3 3 3 2 Fn3 associated CHB_HEX_C PF03174.13 gi|312137443|ref|YP_004004780.1| - 0.00067 19.6 0.1 0.47 10.5 0.0 2.7 2 1 1 3 3 3 2 Chitobiase/beta-hexosaminidase C-terminal domain Glycos_transf_2 PF00535.26 gi|312137444|ref|YP_004004781.1| - 3e-28 98.7 0.1 4.9e-28 98.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|312137444|ref|YP_004004781.1| - 1.3e-08 35.0 0.0 2.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|312137444|ref|YP_004004781.1| - 1.5e-07 31.2 0.1 2.4e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CDC48_N PF02359.18 gi|312137444|ref|YP_004004781.1| - 0.001 19.2 0.9 0.0026 17.9 0.1 2.1 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Glyco_tranf_2_4 PF13704.6 gi|312137444|ref|YP_004004781.1| - 0.0021 18.5 0.0 0.005 17.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 MazE_antitoxin PF04014.18 gi|312137444|ref|YP_004004781.1| - 0.0036 17.2 1.8 5.3 7.1 0.1 4.0 5 0 0 5 5 5 2 Antidote-toxin recognition MazE, bacterial antitoxin CofC PF01983.16 gi|312137444|ref|YP_004004781.1| - 0.0045 16.2 0.2 0.0091 15.2 0.2 1.5 1 0 0 1 1 1 1 Guanylyl transferase CofC like SPOUT_MTase_2 PF14419.6 gi|312137445|ref|YP_004004782.1| - 8.3e-80 266.2 0.0 1.3e-79 265.6 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|312137445|ref|YP_004004782.1| - 3.1e-29 101.9 3.5 5.7e-29 101.1 2.4 2.0 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_4 PF09936.9 gi|312137445|ref|YP_004004782.1| - 0.022 14.6 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase ATP_transf PF09830.9 gi|312137445|ref|YP_004004782.1| - 0.17 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 ATP adenylyltransferase DJ-1_PfpI PF01965.24 gi|312137446|ref|YP_004004783.1| - 4.2e-23 82.0 0.7 6.2e-23 81.4 0.7 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|312137446|ref|YP_004004783.1| - 0.0047 16.6 0.0 0.0081 15.9 0.0 1.3 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|312137446|ref|YP_004004783.1| - 0.024 13.7 0.0 0.045 12.8 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF3783 PF12646.7 gi|312137446|ref|YP_004004783.1| - 0.16 11.9 0.2 45 4.1 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF3783) 2-ph_phosp PF04029.14 gi|312137447|ref|YP_004004784.1| - 1.9e-66 223.5 1.2 2.3e-66 223.2 1.2 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase TK PF00265.18 gi|312137447|ref|YP_004004784.1| - 0.057 13.3 0.2 0.12 12.2 0.1 1.7 1 1 1 2 2 2 0 Thymidine kinase ELL PF10390.9 gi|312137447|ref|YP_004004784.1| - 0.091 12.2 0.5 0.16 11.4 0.5 1.3 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL MCR_C PF04609.12 gi|312137449|ref|YP_004004786.1| - 1.5e-126 421.0 1.6 1.8e-126 420.8 1.6 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C TraB PF01963.17 gi|312137450|ref|YP_004004787.1| - 3.5e-29 102.5 0.0 4.5e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 TraB family Ric8 PF10165.9 gi|312137450|ref|YP_004004787.1| - 0.082 11.9 0.0 0.087 11.8 0.0 1.2 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn DUF1922 PF09082.10 gi|312137451|ref|YP_004004788.1| - 5.6e-34 116.3 1.8 6.3e-34 116.1 1.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Rh5 PF18515.1 gi|312137451|ref|YP_004004788.1| - 0.047 13.0 0.0 0.057 12.7 0.0 1.0 1 0 0 1 1 1 0 Rh5 coiled-coil domain GTP_EFTU PF00009.27 gi|312137452|ref|YP_004004789.1| - 3e-31 108.5 0.1 5.9e-31 107.5 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|312137452|ref|YP_004004789.1| - 1.3e-10 41.5 1.1 1.3e-10 41.5 1.1 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|312137452|ref|YP_004004789.1| - 6.4e-07 29.7 0.2 1.8e-06 28.2 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|312137452|ref|YP_004004789.1| - 0.0039 17.1 1.5 0.15 11.9 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|312137452|ref|YP_004004789.1| - 0.0043 17.1 0.1 0.018 15.1 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|312137452|ref|YP_004004789.1| - 0.028 14.2 0.1 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein IF3_C PF00707.22 gi|312137452|ref|YP_004004789.1| - 0.034 14.1 0.7 0.17 11.9 0.1 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, C-terminal domain Baculo_FP PF03258.14 gi|312137452|ref|YP_004004789.1| - 0.035 14.3 0.1 0.09 12.9 0.1 1.7 1 0 0 1 1 1 0 Baculovirus FP protein AlbA_2 PF04326.14 gi|312137452|ref|YP_004004789.1| - 0.05 13.9 0.6 0.25 11.7 0.3 2.3 2 0 0 2 2 2 0 Putative DNA-binding domain Arf PF00025.21 gi|312137452|ref|YP_004004789.1| - 0.18 11.2 1.5 18 4.7 0.0 3.2 3 1 1 4 4 4 0 ADP-ribosylation factor family ATP_bind_3 PF01171.20 gi|312137453|ref|YP_004004790.1| - 9.9e-16 58.0 0.0 2.4e-15 56.8 0.0 1.5 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|312137453|ref|YP_004004790.1| - 4.4e-05 22.4 0.0 7.8e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|312137453|ref|YP_004004790.1| - 0.0017 18.4 2.4 0.0045 17.0 0.3 2.5 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|312137453|ref|YP_004004790.1| - 0.0077 15.7 0.9 0.016 14.7 0.9 1.6 1 0 0 1 1 1 1 Zinc-ribbon Diphthami_syn_2 PF01902.17 gi|312137453|ref|YP_004004790.1| - 0.018 14.5 0.2 0.21 11.1 0.0 2.3 2 0 0 2 2 2 0 Diphthamide synthase RecR PF02132.15 gi|312137453|ref|YP_004004790.1| - 0.023 14.3 0.4 0.023 14.3 0.4 2.1 2 0 0 2 2 2 0 RecR protein Peptidase_C14 PF00656.22 gi|312137453|ref|YP_004004790.1| - 0.028 14.4 0.5 0.11 12.5 0.0 2.1 3 0 0 3 3 3 0 Caspase domain DrsE PF02635.15 gi|312137453|ref|YP_004004790.1| - 0.075 13.4 0.2 15 6.0 0.0 2.4 2 0 0 2 2 2 0 DsrE/DsrF-like family BAG PF02179.16 gi|312137453|ref|YP_004004790.1| - 0.081 13.4 0.2 0.27 11.7 0.2 2.0 1 0 0 1 1 1 0 BAG domain Thiamine_BP PF01910.17 gi|312137454|ref|YP_004004791.1| - 4.8e-32 109.7 3.3 5.4e-32 109.6 3.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein ParB_C PF18064.1 gi|312137454|ref|YP_004004791.1| - 0.17 12.1 0.1 0.51 10.5 0.0 1.8 2 0 0 2 2 2 0 Centromere-binding protein ParB C-terminal Agenet PF05641.12 gi|312137454|ref|YP_004004791.1| - 1.7 9.2 4.2 3 8.4 1.0 2.2 1 1 1 2 2 2 0 Agenet domain V-ATPase_G PF03179.15 gi|312137455|ref|YP_004004792.1| - 3.8e-06 27.4 18.1 4e-06 27.3 18.1 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G_2 PF16999.5 gi|312137455|ref|YP_004004792.1| - 6.5e-05 23.3 15.7 0.00016 22.1 15.7 1.5 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|312137455|ref|YP_004004792.1| - 0.0011 18.4 10.6 0.0011 18.4 10.6 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) ATP-synt_B PF00430.18 gi|312137455|ref|YP_004004792.1| - 0.0012 19.0 18.5 0.0038 17.3 4.0 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF883 PF05957.13 gi|312137455|ref|YP_004004792.1| - 0.0083 16.7 8.2 0.17 12.5 0.7 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) DivIVA PF05103.13 gi|312137455|ref|YP_004004792.1| - 0.025 14.7 17.8 6.2 6.9 17.8 2.1 1 1 0 1 1 1 0 DivIVA protein DUF3788 PF12663.7 gi|312137455|ref|YP_004004792.1| - 0.065 13.2 2.0 0.22 11.5 1.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3788) YtxH PF12732.7 gi|312137455|ref|YP_004004792.1| - 0.078 13.5 13.7 25 5.5 13.7 2.2 1 1 0 1 1 1 0 YtxH-like protein FIVAR PF07554.13 gi|312137455|ref|YP_004004792.1| - 0.1 13.4 2.1 0.1 13.4 2.1 2.3 2 0 0 2 2 2 0 FIVAR domain Mitofilin PF09731.9 gi|312137455|ref|YP_004004792.1| - 0.13 11.1 15.0 0.15 10.9 15.0 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein RNase_J_C PF17770.1 gi|312137455|ref|YP_004004792.1| - 8 7.6 13.2 2.1 9.5 1.6 2.4 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain V_ATPase_I PF01496.19 gi|312137456|ref|YP_004004793.1| - 2.5e-27 95.2 15.9 4.4e-19 67.9 1.5 3.0 3 1 1 4 4 4 2 V-type ATPase 116kDa subunit family Mt_ATP-synt_D PF05873.12 gi|312137456|ref|YP_004004793.1| - 0.083 12.7 9.8 1.1 9.1 0.5 2.4 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF2203 PF09969.9 gi|312137456|ref|YP_004004793.1| - 0.1 13.4 2.3 3 8.6 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF948 PF06103.11 gi|312137456|ref|YP_004004793.1| - 0.11 12.7 5.3 11 6.4 0.3 3.9 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Glu_syn_central PF04898.14 gi|312137456|ref|YP_004004793.1| - 0.12 11.9 0.2 0.22 11.0 0.2 1.4 1 0 0 1 1 1 0 Glutamate synthase central domain Snapin_Pallidin PF14712.6 gi|312137456|ref|YP_004004793.1| - 0.23 11.9 3.4 12 6.4 0.2 2.8 2 0 0 2 2 2 0 Snapin/Pallidin APG17 PF04108.12 gi|312137456|ref|YP_004004793.1| - 0.35 9.9 9.2 0.15 11.1 1.4 2.5 2 1 0 2 2 2 0 Autophagy protein Apg17 Laminin_I PF06008.14 gi|312137456|ref|YP_004004793.1| - 0.82 9.3 6.2 1.6 8.4 1.8 2.2 2 0 0 2 2 2 0 Laminin Domain I DUF4225 PF13988.6 gi|312137456|ref|YP_004004793.1| - 1 8.9 3.0 25 4.4 0.9 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) DUF4125 PF13526.6 gi|312137456|ref|YP_004004793.1| - 1.2 8.8 5.0 0.64 9.6 1.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4125) Laminin_II PF06009.12 gi|312137456|ref|YP_004004793.1| - 1.4 8.9 9.3 5.1 7.1 0.2 3.3 2 1 2 4 4 4 0 Laminin Domain II CREPT PF16566.5 gi|312137456|ref|YP_004004793.1| - 2.4 8.3 7.5 7.4 6.7 1.0 2.5 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Spectrin PF00435.21 gi|312137456|ref|YP_004004793.1| - 2.4 8.7 7.9 3 8.4 0.1 2.6 3 0 0 3 3 2 0 Spectrin repeat DUF1664 PF07889.12 gi|312137456|ref|YP_004004793.1| - 3.3 7.8 6.3 18 5.4 0.7 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|312137456|ref|YP_004004793.1| - 3.5 7.9 13.3 2.7 8.2 4.1 3.2 2 0 0 2 2 2 0 Haemolysin XhlA Nsp1_C PF05064.13 gi|312137456|ref|YP_004004793.1| - 3.6 7.4 7.9 0.68 9.8 0.6 2.4 2 0 0 2 2 2 0 Nsp1-like C-terminal region OmpH PF03938.14 gi|312137456|ref|YP_004004793.1| - 6.6 7.1 8.7 1.5 9.2 0.7 2.4 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) SKA2 PF16740.5 gi|312137456|ref|YP_004004793.1| - 9.9 6.0 8.0 2.4 8.0 1.5 2.7 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 ATP-synt_C PF00137.21 gi|312137457|ref|YP_004004794.1| - 1.8e-18 66.6 8.6 2.9e-18 65.9 8.6 1.3 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|312137458|ref|YP_004004795.1| - 1e-42 145.8 22.9 1.2e-42 145.6 22.9 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit FliH PF02108.16 gi|312137458|ref|YP_004004795.1| - 1.4e-06 28.4 2.2 1.4e-06 28.4 2.2 1.9 2 1 0 2 2 2 1 Flagellar assembly protein FliH OSCP PF00213.18 gi|312137458|ref|YP_004004795.1| - 0.00071 19.7 1.3 0.00071 19.7 1.3 2.0 1 1 0 2 2 2 1 ATP synthase delta (OSCP) subunit DivIVA PF05103.13 gi|312137458|ref|YP_004004795.1| - 0.0017 18.5 7.2 0.0017 18.5 7.2 2.7 3 1 1 4 4 4 1 DivIVA protein YtxH PF12732.7 gi|312137458|ref|YP_004004795.1| - 0.0021 18.5 11.6 0.007 16.9 0.1 2.7 1 1 1 2 2 2 1 YtxH-like protein V-ATPase_G_2 PF16999.5 gi|312137458|ref|YP_004004795.1| - 0.052 14.0 15.6 0.57 10.6 10.3 2.4 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit REF PF05755.12 gi|312137458|ref|YP_004004795.1| - 0.065 13.0 3.6 0.059 13.2 2.2 1.5 2 0 0 2 2 2 0 Rubber elongation factor protein (REF) MT0933_antitox PF14013.6 gi|312137458|ref|YP_004004795.1| - 0.25 11.7 0.2 0.25 11.7 0.2 3.3 3 0 0 3 3 3 0 MT0933-like antitoxin protein DUF3552 PF12072.8 gi|312137458|ref|YP_004004795.1| - 0.33 10.3 24.4 2.5 7.5 24.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) ATP-synt_B PF00430.18 gi|312137458|ref|YP_004004795.1| - 0.46 10.6 18.6 4.1 7.5 9.7 3.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DYW_deaminase PF14432.6 gi|312137458|ref|YP_004004795.1| - 3 7.7 8.5 9.7 6.1 6.3 2.7 1 1 1 2 2 2 0 DYW family of nucleic acid deaminases V-ATPase_G PF03179.15 gi|312137458|ref|YP_004004795.1| - 3.5 8.2 27.7 1.1 9.9 22.3 2.6 2 2 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF1054 PF06335.12 gi|312137458|ref|YP_004004795.1| - 9.4 6.1 9.8 8.3 6.3 1.6 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1054) vATP-synt_AC39 PF01992.16 gi|312137459|ref|YP_004004796.1| - 6e-75 252.8 10.1 6.8e-75 252.7 10.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit HTH_40 PF14493.6 gi|312137459|ref|YP_004004796.1| - 0.045 14.2 3.1 10 6.6 0.1 4.0 2 1 2 4 4 4 0 Helix-turn-helix domain MAM1 PF10434.9 gi|312137459|ref|YP_004004796.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Monopolin complex protein MAM1 ATP-synt_F PF01990.17 gi|312137460|ref|YP_004004797.1| - 1.7e-24 85.9 2.4 2e-24 85.7 2.4 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|312137461|ref|YP_004004798.1| - 6.1e-88 294.0 0.0 2.2e-81 272.6 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|312137461|ref|YP_004004798.1| - 6.7e-48 161.5 1.0 6.7e-48 161.5 1.0 2.3 2 0 0 2 2 2 1 ATPsynthase alpha/beta subunit N-term extension Intein_splicing PF14890.6 gi|312137461|ref|YP_004004798.1| - 7.9e-20 71.2 1.8 7.9e-20 71.2 1.8 2.3 3 1 0 3 3 3 1 Intein splicing domain ATP-synt_ab_N PF02874.23 gi|312137461|ref|YP_004004798.1| - 6.3e-17 61.9 3.4 2.3e-16 60.1 3.4 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|312137461|ref|YP_004004798.1| - 0.0052 16.7 0.3 0.042 13.8 0.1 2.5 3 0 0 3 3 3 1 RnfC Barrel sandwich hybrid domain Hint PF01079.20 gi|312137461|ref|YP_004004798.1| - 0.007 15.9 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.6 gi|312137461|ref|YP_004004798.1| - 0.03 14.6 0.8 1.7 9.0 0.0 2.6 2 0 0 2 2 2 0 LAGLIDADG-like domain DUF4258 PF14076.6 gi|312137461|ref|YP_004004798.1| - 0.048 14.1 0.3 0.21 12.0 0.3 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) Pep_deformylase PF01327.21 gi|312137461|ref|YP_004004798.1| - 0.069 12.7 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Polypeptide deformylase FAM180 PF15173.6 gi|312137461|ref|YP_004004798.1| - 0.083 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 FAM180 family Myosin_N PF02736.19 gi|312137461|ref|YP_004004798.1| - 0.39 10.6 5.2 1.8 8.5 0.2 3.4 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain ATP-synt_ab PF00006.25 gi|312137462|ref|YP_004004799.1| - 1.1e-69 234.4 0.0 1.4e-69 234.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|312137462|ref|YP_004004799.1| - 1.7e-12 47.7 2.5 3.4e-12 46.7 2.5 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|312137462|ref|YP_004004799.1| - 8.6e-06 25.8 0.9 2.6e-05 24.3 0.9 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.17 gi|312137463|ref|YP_004004800.1| - 1.1e-63 214.6 13.2 1.3e-63 214.4 13.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF2730 PF10805.8 gi|312137463|ref|YP_004004800.1| - 0.074 13.2 1.5 0.75 9.9 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) DUF22 PF01629.16 gi|312137464|ref|YP_004004801.1| - 1.2e-15 57.1 0.2 1.5e-15 56.7 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 tRNA-synt_2d PF01409.20 gi|312137465|ref|YP_004004802.1| - 3.1e-95 318.3 0.0 4.9e-95 317.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|312137465|ref|YP_004004802.1| - 4.2e-12 46.0 0.0 2.1e-10 40.4 0.0 2.3 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain DUF2582 PF10771.9 gi|312137465|ref|YP_004004802.1| - 5.3e-06 26.5 1.0 0.00031 20.8 0.2 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix domain (DUF2582) tRNA-synt_2 PF00152.20 gi|312137465|ref|YP_004004802.1| - 9e-05 21.7 1.0 0.05 12.7 0.1 3.3 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|312137465|ref|YP_004004802.1| - 0.00036 20.5 0.2 0.0039 17.2 0.0 2.7 3 1 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF3290 PF11694.8 gi|312137465|ref|YP_004004802.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) TFIIE_alpha PF02002.17 gi|312137465|ref|YP_004004802.1| - 0.062 13.2 0.1 0.062 13.2 0.1 3.2 3 1 1 4 4 4 0 TFIIE alpha subunit TrmB PF01978.19 gi|312137465|ref|YP_004004802.1| - 0.11 12.4 0.5 9 6.3 0.1 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB STN1_2 PF09170.10 gi|312137465|ref|YP_004004802.1| - 0.12 12.6 0.9 0.32 11.2 0.9 1.6 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 CitG PF01874.16 gi|312137466|ref|YP_004004803.1| - 5.2e-77 259.2 0.0 5.9e-77 259.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Chalcone PF02431.15 gi|312137466|ref|YP_004004803.1| - 0.014 14.9 0.0 0.036 13.5 0.0 1.6 2 0 0 2 2 2 0 Chalcone-flavanone isomerase ALAD PF00490.21 gi|312137467|ref|YP_004004804.1| - 1.3e-147 491.1 0.5 1.5e-147 490.9 0.5 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NosD PF05048.13 gi|312137468|ref|YP_004004805.1| - 4.2e-37 127.7 38.9 1.8e-35 122.4 20.4 3.2 2 2 2 4 4 4 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|312137468|ref|YP_004004805.1| - 1.6e-17 63.8 69.0 3.9e-14 52.8 24.8 4.0 2 2 2 4 4 4 3 Right handed beta helix region Transglut_C PF00927.22 gi|312137468|ref|YP_004004805.1| - 0.0021 18.1 0.6 0.011 15.9 0.3 2.3 1 1 1 2 2 2 1 Transglutaminase family, C-terminal ig like domain FixG_C PF11614.8 gi|312137468|ref|YP_004004805.1| - 0.073 13.3 1.0 0.22 11.8 1.0 1.8 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase Ig_GlcNase PF18368.1 gi|312137468|ref|YP_004004805.1| - 0.074 13.2 0.2 0.21 11.8 0.2 1.8 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF4981 PF16353.5 gi|312137468|ref|YP_004004805.1| - 0.11 13.0 0.8 3.1 8.3 0.1 3.4 2 2 1 3 3 3 0 Domain of unknown function(DUF4981) Linker_histone PF00538.19 gi|312137468|ref|YP_004004805.1| - 1.1 9.6 3.9 2.9 8.3 0.0 2.9 3 0 0 3 3 3 0 linker histone H1 and H5 family Big_3 PF07523.12 gi|312137468|ref|YP_004004805.1| - 3.2 8.1 5.7 11 6.4 1.0 3.4 1 1 2 3 3 3 0 Bacterial Ig-like domain (group 3) CobN-Mg_chel PF02514.16 gi|312137469|ref|YP_004004806.1| - 2.9e-227 757.1 0.0 3.9e-227 756.7 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|312137469|ref|YP_004004806.1| - 0.0011 19.2 0.4 0.0033 17.7 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|312137469|ref|YP_004004806.1| - 0.002 18.1 0.2 0.0045 17.0 0.2 1.5 1 0 0 1 1 1 1 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|312137469|ref|YP_004004806.1| - 0.0044 17.0 0.0 0.0088 16.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain Gp-FAR-1 PF05823.12 gi|312137469|ref|YP_004004806.1| - 0.089 13.1 0.2 0.25 11.7 0.2 1.7 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Ferritin PF00210.24 gi|312137469|ref|YP_004004806.1| - 0.13 12.2 0.0 1.5 8.7 0.0 2.6 3 0 0 3 3 3 0 Ferritin-like domain Fer4 PF00037.27 gi|312137470|ref|YP_004004807.1| - 3e-15 55.3 22.3 1.2e-09 37.5 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|312137470|ref|YP_004004807.1| - 2.4e-13 50.5 25.5 2.1e-09 37.8 15.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|312137470|ref|YP_004004807.1| - 1.2e-12 47.4 21.0 1.1e-07 31.6 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|312137470|ref|YP_004004807.1| - 4.3e-11 42.8 10.2 2.9e-05 24.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|312137470|ref|YP_004004807.1| - 3.1e-10 40.0 14.8 5e-10 39.4 14.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|312137470|ref|YP_004004807.1| - 3.9e-10 39.7 8.9 4e-06 26.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|312137470|ref|YP_004004807.1| - 3.6e-09 36.4 19.0 2e-05 24.7 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|312137470|ref|YP_004004807.1| - 5.4e-09 35.6 17.0 4.5e-05 23.3 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.10 gi|312137470|ref|YP_004004807.1| - 1.5e-08 34.4 0.0 2.2e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 NIL domain Fer4_16 PF13484.6 gi|312137470|ref|YP_004004807.1| - 5.9e-06 27.1 15.5 4.2e-05 24.4 1.1 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|312137470|ref|YP_004004807.1| - 5.5e-05 23.6 16.6 0.0011 19.5 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|312137470|ref|YP_004004807.1| - 0.00038 20.9 12.9 0.0099 16.3 2.6 2.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|312137470|ref|YP_004004807.1| - 0.00047 20.9 13.3 0.079 13.8 4.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|312137470|ref|YP_004004807.1| - 0.001 19.3 16.1 0.0075 16.5 16.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|312137470|ref|YP_004004807.1| - 0.0036 17.8 15.4 0.043 14.4 1.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|312137470|ref|YP_004004807.1| - 0.0053 17.6 24.4 0.0053 17.6 5.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|312137470|ref|YP_004004807.1| - 0.047 14.4 17.4 0.8 10.5 4.5 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain HcyBio PF01837.16 gi|312137471|ref|YP_004004808.1| - 1.1e-154 514.5 0.2 1.5e-154 514.1 0.2 1.2 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|312137471|ref|YP_004004808.1| - 1.1e-27 96.2 7.5 4.7e-15 55.8 0.7 3.1 3 0 0 3 3 3 2 CBS domain TrkA_N PF02254.18 gi|312137472|ref|YP_004004809.1| - 1.8e-36 124.9 0.5 4.9e-36 123.5 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|312137472|ref|YP_004004809.1| - 1.7e-13 50.2 0.3 5.9e-13 48.4 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|312137472|ref|YP_004004809.1| - 2.4e-07 31.1 0.1 5.9e-07 29.9 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|312137472|ref|YP_004004809.1| - 7.5e-07 29.7 0.4 4.1e-06 27.3 0.0 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|312137472|ref|YP_004004809.1| - 8.1e-07 29.4 0.1 1.6e-06 28.4 0.1 1.6 2 0 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|312137472|ref|YP_004004809.1| - 8.2e-07 29.2 0.2 4.9e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|312137472|ref|YP_004004809.1| - 5.2e-06 26.5 0.0 9.2e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding ApbA PF02558.16 gi|312137472|ref|YP_004004809.1| - 3.3e-05 23.6 0.4 0.00013 21.7 0.0 2.1 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|312137472|ref|YP_004004809.1| - 5.6e-05 23.6 0.0 0.00015 22.3 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|312137472|ref|YP_004004809.1| - 9.2e-05 22.5 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|312137472|ref|YP_004004809.1| - 0.00018 21.1 0.5 0.00084 19.0 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|312137472|ref|YP_004004809.1| - 0.00021 20.6 0.0 0.00059 19.2 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain ADH_zinc_N PF00107.26 gi|312137472|ref|YP_004004809.1| - 0.00032 20.7 0.1 0.053 13.5 0.0 2.3 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|312137472|ref|YP_004004809.1| - 0.00043 20.2 0.2 0.00085 19.3 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|312137472|ref|YP_004004809.1| - 0.001 18.7 0.1 0.003 17.2 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family AlaDh_PNT_C PF01262.21 gi|312137472|ref|YP_004004809.1| - 0.0015 17.8 0.1 0.0029 16.9 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|312137472|ref|YP_004004809.1| - 0.0021 18.3 0.1 0.0096 16.1 0.0 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|312137472|ref|YP_004004809.1| - 0.0068 15.7 0.1 0.018 14.3 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|312137472|ref|YP_004004809.1| - 0.0068 16.6 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Epimerase PF01370.21 gi|312137472|ref|YP_004004809.1| - 0.008 15.7 0.1 0.027 13.9 0.0 1.8 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family DAO PF01266.24 gi|312137472|ref|YP_004004809.1| - 0.0097 15.5 0.0 0.029 13.9 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|312137472|ref|YP_004004809.1| - 0.013 16.0 0.0 0.019 15.5 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain THF_DHG_CYH_C PF02882.19 gi|312137472|ref|YP_004004809.1| - 0.078 12.3 0.4 1.7 7.9 0.1 2.7 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_4 PF13439.6 gi|312137472|ref|YP_004004809.1| - 0.1 12.6 0.1 1.7 8.6 0.0 2.5 2 1 1 3 3 3 0 Glycosyltransferase Family 4 Rossmann-like PF10727.9 gi|312137472|ref|YP_004004809.1| - 0.1 12.5 0.2 0.25 11.2 0.0 1.8 2 1 1 3 3 3 0 Rossmann-like domain Trp_halogenase PF04820.14 gi|312137472|ref|YP_004004809.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase adh_short PF00106.25 gi|312137472|ref|YP_004004809.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase HI0933_like PF03486.14 gi|312137472|ref|YP_004004809.1| - 0.12 11.0 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.19 gi|312137472|ref|YP_004004809.1| - 0.14 11.5 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PmbA_TldD PF01523.16 gi|312137473|ref|YP_004004810.1| - 1.4e-57 195.7 1.0 1.4e-57 195.7 1.0 1.6 2 0 0 2 2 2 1 Putative modulator of DNA gyrase AMMECR1 PF01871.17 gi|312137474|ref|YP_004004811.1| - 1.5e-57 193.8 0.0 1.7e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 ATP-grasp_6 PF18419.1 gi|312137474|ref|YP_004004811.1| - 0.17 11.6 0.0 0.52 10.0 0.0 1.8 1 0 0 1 1 1 0 ATP-grasp-like domain NOG1_N PF17835.1 gi|312137475|ref|YP_004004812.1| - 1.9e-39 135.2 3.4 1.9e-39 135.2 3.4 1.9 2 0 0 2 2 2 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|312137475|ref|YP_004004812.1| - 1.2e-23 82.6 0.1 5.4e-23 80.5 0.1 2.1 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|312137475|ref|YP_004004812.1| - 1.8e-20 73.1 0.0 4.1e-20 72.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|312137475|ref|YP_004004812.1| - 6.7e-14 51.7 0.1 1.1e-13 51.0 0.1 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|312137475|ref|YP_004004812.1| - 2.2e-05 24.4 0.6 0.27 11.1 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|312137475|ref|YP_004004812.1| - 4.5e-05 23.2 0.2 0.00038 20.2 0.1 2.4 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|312137475|ref|YP_004004812.1| - 0.0027 17.7 0.2 0.0027 17.7 0.2 2.0 2 1 0 2 2 2 1 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|312137475|ref|YP_004004812.1| - 0.0031 18.1 0.1 0.13 12.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|312137475|ref|YP_004004812.1| - 0.0031 17.1 0.0 1 8.9 0.0 2.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|312137475|ref|YP_004004812.1| - 0.016 15.3 1.2 6 6.9 0.0 2.9 3 1 1 4 4 4 0 Dynamin family cobW PF02492.19 gi|312137475|ref|YP_004004812.1| - 0.018 14.6 0.1 3.5 7.2 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|312137475|ref|YP_004004812.1| - 0.028 13.4 0.0 2 7.4 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF3410 PF11890.8 gi|312137475|ref|YP_004004812.1| - 0.045 13.6 0.0 15 5.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3410) AIG1 PF04548.16 gi|312137475|ref|YP_004004812.1| - 0.047 13.0 0.0 0.071 12.4 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Arf PF00025.21 gi|312137475|ref|YP_004004812.1| - 0.078 12.4 0.5 1.9 7.9 0.5 2.8 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_23 PF13476.6 gi|312137475|ref|YP_004004812.1| - 1.1 9.7 7.6 3.4 8.1 0.0 3.0 2 1 1 3 3 3 0 AAA domain HSP20 PF00011.21 gi|312137476|ref|YP_004004813.1| - 9.5e-20 70.7 5.9 1.5e-19 70.0 5.9 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|312137476|ref|YP_004004813.1| - 2.8e-16 58.8 0.1 4.3e-16 58.2 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA FKBP26_C PF18046.1 gi|312137476|ref|YP_004004813.1| - 0.0012 18.9 3.1 0.1 12.7 0.3 2.4 2 0 0 2 2 2 2 FKBP26_C-terminal GvpH PF05455.11 gi|312137476|ref|YP_004004813.1| - 0.0019 18.3 0.1 0.0025 17.9 0.1 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|312137476|ref|YP_004004813.1| - 0.0021 18.4 0.0 0.0047 17.3 0.0 1.6 1 1 1 2 2 2 1 PIH1 CS-like domain CS PF04969.16 gi|312137476|ref|YP_004004813.1| - 0.0023 18.9 2.3 0.0023 18.9 2.3 1.6 1 1 1 2 2 2 1 CS domain DUF4097 PF13349.6 gi|312137476|ref|YP_004004813.1| - 0.043 13.2 1.8 0.055 12.8 1.8 1.1 1 0 0 1 1 1 0 Putative adhesin DUF3958 PF13125.6 gi|312137476|ref|YP_004004813.1| - 0.68 10.2 5.2 11 6.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3958) DUF447 PF04289.12 gi|312137477|ref|YP_004004814.1| - 5.9e-43 146.7 1.1 6.8e-43 146.5 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Putative_PNPOx PF01243.20 gi|312137477|ref|YP_004004814.1| - 0.0074 16.5 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2124 PF09897.9 gi|312137478|ref|YP_004004815.1| - 3.2e-54 182.7 0.3 3.6e-54 182.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DJ-1_PfpI PF01965.24 gi|312137478|ref|YP_004004815.1| - 0.039 13.8 0.1 0.053 13.3 0.1 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family ThiP_synth PF10120.9 gi|312137479|ref|YP_004004816.1| - 4e-61 205.4 0.0 4.6e-61 205.2 0.0 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase SIS PF01380.22 gi|312137480|ref|YP_004004817.1| - 1.5e-22 79.8 0.1 1.7e-16 60.2 0.1 2.1 2 0 0 2 2 2 2 SIS domain bact-PGI_C PF10432.9 gi|312137480|ref|YP_004004817.1| - 0.00016 21.7 0.0 0.00037 20.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain COX1 PF00115.20 gi|312137481|ref|YP_004004818.1| - 0.0052 15.7 0.6 0.0059 15.5 0.6 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I SurA_N_2 PF13623.6 gi|312137481|ref|YP_004004818.1| - 0.079 12.8 0.7 0.092 12.6 0.7 1.1 1 0 0 1 1 1 0 SurA N-terminal domain DDE_Tnp_1_assoc PF13808.6 gi|312137481|ref|YP_004004818.1| - 0.17 11.9 0.3 0.25 11.4 0.3 1.3 1 0 0 1 1 1 0 DDE_Tnp_1-associated ArgJ PF01960.18 gi|312137482|ref|YP_004004819.1| - 1.1e-138 462.1 9.9 1.4e-138 461.8 9.9 1.0 1 0 0 1 1 1 1 ArgJ family DUF555 PF04475.12 gi|312137482|ref|YP_004004819.1| - 0.051 13.9 0.2 0.51 10.7 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF555) BORCS7 PF16088.5 gi|312137482|ref|YP_004004819.1| - 0.058 13.7 0.3 0.15 12.3 0.3 1.7 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 7 Spc24 PF08286.11 gi|312137482|ref|YP_004004819.1| - 0.16 12.2 1.9 0.25 11.6 0.1 2.2 3 1 0 3 3 3 0 Spc24 subunit of Ndc80 AA_kinase PF00696.28 gi|312137483|ref|YP_004004820.1| - 8e-47 159.8 2.2 9.3e-47 159.6 2.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family Iso_dh PF00180.20 gi|312137484|ref|YP_004004821.1| - 6.4e-108 361.0 0.1 7.8e-108 360.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Dicty_CAD PF05720.12 gi|312137484|ref|YP_004004821.1| - 0.0063 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Cell-cell adhesion domain Nit_Regul_Hom PF10126.9 gi|312137485|ref|YP_004004822.1| - 1.8e-47 159.8 1.9 2e-47 159.7 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII ATP-synt_F PF01990.17 gi|312137485|ref|YP_004004822.1| - 0.02 15.2 0.1 0.026 14.9 0.1 1.1 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit MOR2-PAG1_mid PF14228.6 gi|312137485|ref|YP_004004822.1| - 0.097 10.3 0.1 0.1 10.2 0.1 1.0 1 0 0 1 1 1 0 Cell morphogenesis central region NTP_transferase PF00483.23 gi|312137486|ref|YP_004004823.1| - 5.4e-29 101.5 0.1 1.1e-28 100.5 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|312137486|ref|YP_004004823.1| - 1.1e-10 42.1 0.0 1.7e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|312137486|ref|YP_004004823.1| - 0.011 15.5 0.0 0.026 14.2 0.0 1.6 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|312137486|ref|YP_004004823.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Smr PF01713.21 gi|312137486|ref|YP_004004823.1| - 0.049 14.0 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Smr domain RNase_Zc3h12a PF11977.8 gi|312137488|ref|YP_004004825.1| - 6e-21 74.8 2.6 1.2e-20 73.9 2.6 1.5 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain PRORP PF16953.5 gi|312137488|ref|YP_004004825.1| - 0.0018 17.9 0.1 0.0047 16.5 0.1 1.7 1 0 0 1 1 1 1 Protein-only RNase P DUF5615 PF18480.1 gi|312137488|ref|YP_004004825.1| - 0.13 12.0 0.3 1 9.1 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF5615) Metallophos PF00149.28 gi|312137489|ref|YP_004004826.1| - 1e-19 71.8 0.6 1.3e-19 71.5 0.6 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|312137489|ref|YP_004004826.1| - 1.6e-17 64.2 0.0 2.5e-17 63.5 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|312137489|ref|YP_004004826.1| - 0.00062 19.2 1.3 0.11 11.8 1.3 2.7 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily PGA_cap PF09587.10 gi|312137489|ref|YP_004004826.1| - 0.0053 16.2 0.1 0.074 12.5 0.0 2.0 1 1 0 2 2 2 1 Bacterial capsule synthesis protein PGA_cap PhoD PF09423.10 gi|312137489|ref|YP_004004826.1| - 0.0061 15.6 0.0 0.015 14.4 0.0 1.7 2 0 0 2 2 2 1 PhoD-like phosphatase MutL PF13941.6 gi|312137489|ref|YP_004004826.1| - 0.06 11.9 0.0 0.095 11.3 0.0 1.2 1 0 0 1 1 1 0 MutL protein GRAS PF03514.14 gi|312137489|ref|YP_004004826.1| - 0.18 10.7 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 GRAS domain family NAC PF01849.18 gi|312137490|ref|YP_004004827.1| - 4.5e-18 65.0 5.3 7e-18 64.4 4.5 1.7 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|312137490|ref|YP_004004827.1| - 0.0049 16.7 0.0 0.0069 16.2 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain SPT6_acidic PF14632.6 gi|312137490|ref|YP_004004827.1| - 0.012 16.1 1.5 0.014 15.9 1.2 1.4 1 1 0 1 1 1 0 Acidic N-terminal SPT6 HOIP-UBA PF16678.5 gi|312137490|ref|YP_004004827.1| - 0.025 14.6 1.0 0.03 14.3 1.0 1.5 1 1 0 1 1 1 0 HOIP UBA domain pair RTC4 PF14474.6 gi|312137490|ref|YP_004004827.1| - 0.06 13.5 0.5 0.17 12.0 0.1 1.8 2 1 0 2 2 2 0 RTC4-like domain CUE PF02845.16 gi|312137490|ref|YP_004004827.1| - 0.063 13.0 0.2 0.88 9.3 0.0 2.7 2 1 1 3 3 3 0 CUE domain TAP_C PF03943.13 gi|312137490|ref|YP_004004827.1| - 0.1 12.2 2.3 1.6 8.4 0.0 2.9 3 0 0 3 3 3 0 TAP C-terminal domain TIP49 PF06068.13 gi|312137490|ref|YP_004004827.1| - 0.11 11.7 5.4 0.12 11.5 5.4 1.0 1 0 0 1 1 1 0 TIP49 P-loop domain TGT PF01702.18 gi|312137491|ref|YP_004004828.1| - 1.9e-80 270.6 0.0 2.6e-80 270.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|312137491|ref|YP_004004828.1| - 3.9e-23 81.4 0.0 2.2e-22 78.9 0.0 2.3 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|312137491|ref|YP_004004828.1| - 1.3e-18 66.7 0.4 1.3e-18 66.7 0.4 2.8 4 0 0 4 4 4 1 PUA domain UPF0113 PF03657.13 gi|312137491|ref|YP_004004828.1| - 5.7e-07 29.7 0.1 1.5e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 UPF0113 PUA domain DUF5591 PF17884.1 gi|312137491|ref|YP_004004828.1| - 7.8e-06 25.8 0.1 1.8e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) ThiS-like PF14453.6 gi|312137491|ref|YP_004004828.1| - 0.27 11.3 2.6 1.4 9.0 0.1 2.6 2 0 0 2 2 2 0 ThiS-like ubiquitin Methyltransf_30 PF05430.11 gi|312137492|ref|YP_004004829.1| - 6.7e-30 103.5 0.0 1.4e-29 102.5 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|312137492|ref|YP_004004829.1| - 0.00057 20.5 0.0 1.5 9.6 0.0 2.6 2 0 0 2 2 2 2 Methyltransferase domain Spermine_synth PF01564.17 gi|312137492|ref|YP_004004829.1| - 0.00093 18.7 0.7 0.0031 16.9 0.1 2.1 2 1 0 2 2 2 1 Spermine/spermidine synthase domain MTS PF05175.14 gi|312137492|ref|YP_004004829.1| - 0.0061 16.1 0.1 0.016 14.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain SAM_MT PF04445.13 gi|312137492|ref|YP_004004829.1| - 0.02 14.3 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase E1_UFD PF09358.10 gi|312137492|ref|YP_004004829.1| - 0.026 15.2 0.2 0.086 13.5 0.2 1.8 1 1 0 1 1 1 0 Ubiquitin fold domain PCMT PF01135.19 gi|312137492|ref|YP_004004829.1| - 0.028 14.2 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|312137492|ref|YP_004004829.1| - 0.057 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|312137492|ref|YP_004004829.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|312137492|ref|YP_004004829.1| - 0.082 12.7 0.0 10 5.9 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|312137492|ref|YP_004004829.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Radical_SAM PF04055.21 gi|312137493|ref|YP_004004830.1| - 1.5e-20 74.2 1.3 2e-20 73.8 1.3 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|312137493|ref|YP_004004830.1| - 4.3e-13 49.7 0.4 8.4e-13 48.8 0.4 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|312137493|ref|YP_004004830.1| - 1.6e-09 37.9 0.3 3e-09 37.0 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain MAF_flag10 PF01973.18 gi|312137493|ref|YP_004004830.1| - 0.032 13.9 0.1 0.052 13.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 BET PF17035.5 gi|312137493|ref|YP_004004830.1| - 0.089 13.0 0.6 0.46 10.7 0.1 2.3 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation DUF211 PF02680.14 gi|312137494|ref|YP_004004831.1| - 6.4e-37 125.6 1.5 7.1e-37 125.5 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 ACT PF01842.25 gi|312137494|ref|YP_004004831.1| - 0.11 12.3 0.2 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 ACT domain Metallophos PF00149.28 gi|312137495|ref|YP_004004832.1| - 4.3e-17 63.3 1.4 6.6e-17 62.7 1.4 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|312137495|ref|YP_004004832.1| - 3.7e-06 27.2 0.0 7e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RDD PF06271.12 gi|312137496|ref|YP_004004833.1| - 5.1e-17 62.4 5.8 6.2e-17 62.1 5.8 1.1 1 0 0 1 1 1 1 RDD family DUF5079 PF16882.5 gi|312137496|ref|YP_004004833.1| - 0.043 13.7 11.6 0.054 13.4 11.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5079) Peptidase_M56 PF05569.11 gi|312137496|ref|YP_004004833.1| - 0.55 9.4 11.1 0.91 8.7 11.1 1.4 1 1 0 1 1 1 0 BlaR1 peptidase M56 FA_desaturase PF00487.24 gi|312137496|ref|YP_004004833.1| - 0.58 9.9 4.1 0.56 10.0 3.8 1.3 1 1 0 1 1 1 0 Fatty acid desaturase Wzy_C PF04932.15 gi|312137496|ref|YP_004004833.1| - 2.6 7.7 7.5 3.5 7.2 7.5 1.3 1 1 0 1 1 1 0 O-Antigen ligase AIRS_C PF02769.22 gi|312137497|ref|YP_004004834.1| - 2e-31 109.2 3.7 3.3e-31 108.5 3.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|312137497|ref|YP_004004834.1| - 8.1e-20 71.3 0.1 1.7e-19 70.2 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Methyltransf_31 PF13847.6 gi|312137498|ref|YP_004004835.1| - 3.6e-14 52.8 0.3 4.7e-14 52.4 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|312137498|ref|YP_004004835.1| - 3e-11 43.9 0.0 4.9e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|312137498|ref|YP_004004835.1| - 1.5e-10 41.2 2.4 2e-10 40.8 2.4 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|312137498|ref|YP_004004835.1| - 3.7e-10 39.6 1.0 9e-10 38.4 0.8 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|312137498|ref|YP_004004835.1| - 1.5e-08 34.4 0.4 2.5e-08 33.7 0.2 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|312137498|ref|YP_004004835.1| - 7.7e-07 28.8 3.8 9.5e-07 28.5 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|312137498|ref|YP_004004835.1| - 8.7e-07 28.9 0.2 1.1e-06 28.6 0.2 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|312137498|ref|YP_004004835.1| - 9.6e-07 29.4 0.0 1.7e-06 28.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|312137498|ref|YP_004004835.1| - 1.1e-06 28.2 0.6 3e-06 26.7 0.3 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_3 PF01596.17 gi|312137498|ref|YP_004004835.1| - 1.5e-06 27.5 0.7 2.1e-06 27.1 0.6 1.4 1 1 0 1 1 1 1 O-methyltransferase Met_10 PF02475.16 gi|312137498|ref|YP_004004835.1| - 3.3e-06 27.0 0.2 5.8e-06 26.2 0.2 1.4 1 1 0 1 1 1 1 Met-10+ like-protein NodS PF05401.11 gi|312137498|ref|YP_004004835.1| - 1.1e-05 25.2 0.2 3e-05 23.7 0.1 1.7 1 1 1 2 2 2 1 Nodulation protein S (NodS) Methyltransf_12 PF08242.12 gi|312137498|ref|YP_004004835.1| - 1.1e-05 26.1 0.1 1.6e-05 25.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|312137498|ref|YP_004004835.1| - 1.8e-05 24.4 2.3 2.3e-05 24.0 2.3 1.3 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase UPF0020 PF01170.18 gi|312137498|ref|YP_004004835.1| - 4.6e-05 23.2 0.3 0.0018 18.0 0.3 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|312137498|ref|YP_004004835.1| - 7.1e-05 22.5 0.1 0.00015 21.4 0.1 1.6 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|312137498|ref|YP_004004835.1| - 8.3e-05 23.6 0.0 0.00012 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|312137498|ref|YP_004004835.1| - 0.00021 20.8 0.6 0.00038 20.0 0.2 1.6 2 0 0 2 2 2 1 Putative methyltransferase RrnaAD PF00398.20 gi|312137498|ref|YP_004004835.1| - 0.00031 19.9 0.1 0.00036 19.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|312137498|ref|YP_004004835.1| - 0.001 19.0 0.0 0.0014 18.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|312137498|ref|YP_004004835.1| - 0.0049 16.2 0.5 0.0072 15.6 0.5 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.11 gi|312137498|ref|YP_004004835.1| - 0.011 14.8 0.2 0.015 14.3 0.2 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 gi|312137498|ref|YP_004004835.1| - 0.017 14.5 0.5 0.039 13.4 0.2 1.7 1 1 1 2 2 2 0 Tellurite resistance protein TehB PRMT5 PF05185.16 gi|312137498|ref|YP_004004835.1| - 0.084 12.7 3.8 0.094 12.6 0.7 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Methyltr_RsmB-F PF01189.17 gi|312137498|ref|YP_004004835.1| - 0.12 12.0 1.2 0.3 10.7 0.2 1.8 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F Methyltransf_32 PF13679.6 gi|312137498|ref|YP_004004835.1| - 0.13 12.3 0.1 0.19 11.7 0.1 1.4 1 1 0 1 1 1 0 Methyltransferase domain Flavoprotein PF02441.19 gi|312137499|ref|YP_004004836.1| - 2.9e-24 85.6 0.0 4e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein HD PF01966.22 gi|312137500|ref|YP_004004837.1| - 7.2e-18 65.0 0.5 1.9e-17 63.6 0.5 1.8 1 0 0 1 1 1 1 HD domain PDEase_I PF00233.19 gi|312137500|ref|YP_004004837.1| - 0.0004 20.2 0.2 0.12 12.0 0.0 2.3 2 0 0 2 2 2 2 3'5'-cyclic nucleotide phosphodiesterase HDOD PF08668.12 gi|312137500|ref|YP_004004837.1| - 0.0043 16.5 0.3 0.026 14.0 0.0 2.3 2 1 0 2 2 2 1 HDOD domain MoaE PF02391.17 gi|312137501|ref|YP_004004838.1| - 3.2e-15 56.4 0.1 3.7e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 MoaE protein AAA_25 PF13481.6 gi|312137501|ref|YP_004004838.1| - 0.031 13.9 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Peptidase_C11 PF03415.14 gi|312137501|ref|YP_004004838.1| - 0.068 12.6 1.1 0.074 12.4 1.1 1.2 1 0 0 1 1 1 0 Clostripain family CTP_transf_like PF01467.26 gi|312137502|ref|YP_004004839.1| - 1.9e-15 57.3 0.0 3e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|312137502|ref|YP_004004839.1| - 0.048 12.9 0.0 1.7 7.7 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase ATP-sulfurylase PF01747.17 gi|312137502|ref|YP_004004839.1| - 0.072 12.6 0.0 9.2 5.7 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase ABC_tran PF00005.27 gi|312137503|ref|YP_004004840.1| - 2.7e-58 196.3 0.0 2.4e-29 102.6 0.1 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|312137503|ref|YP_004004840.1| - 2.3e-15 57.2 0.1 0.0033 17.3 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|312137503|ref|YP_004004840.1| - 2.8e-07 30.2 4.7 0.001 18.6 0.1 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|312137503|ref|YP_004004840.1| - 3.8e-07 30.2 1.1 0.0068 16.3 0.1 2.6 2 1 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|312137503|ref|YP_004004840.1| - 2.1e-06 28.1 3.2 0.22 11.8 0.2 3.8 4 0 0 4 4 3 2 AAA domain AAA_23 PF13476.6 gi|312137503|ref|YP_004004840.1| - 5.5e-06 27.0 0.8 0.03 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|312137503|ref|YP_004004840.1| - 1.8e-05 24.4 2.0 0.15 11.8 0.3 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|312137503|ref|YP_004004840.1| - 2e-05 25.0 0.6 0.16 12.4 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.6 gi|312137503|ref|YP_004004840.1| - 6.2e-05 22.6 0.5 8.1 6.0 0.0 4.5 4 1 0 4 4 4 0 AAA domain Rad17 PF03215.15 gi|312137503|ref|YP_004004840.1| - 0.00012 22.1 0.0 0.12 12.2 0.0 2.7 2 0 0 2 2 2 1 Rad17 P-loop domain TniB PF05621.11 gi|312137503|ref|YP_004004840.1| - 0.00017 21.0 2.9 0.02 14.3 0.0 3.9 4 0 0 4 4 4 1 Bacterial TniB protein PhoH PF02562.16 gi|312137503|ref|YP_004004840.1| - 0.00031 20.3 0.2 0.3 10.5 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_18 PF13238.6 gi|312137503|ref|YP_004004840.1| - 0.00062 20.3 0.2 0.78 10.3 0.0 3.6 4 0 0 4 4 3 1 AAA domain MMR_HSR1 PF01926.23 gi|312137503|ref|YP_004004840.1| - 0.00072 19.6 1.7 0.06 13.4 0.3 3.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|312137503|ref|YP_004004840.1| - 0.00074 19.3 2.7 1.1 8.9 1.1 3.2 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|312137503|ref|YP_004004840.1| - 0.0008 19.6 0.1 0.052 13.8 0.0 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|312137503|ref|YP_004004840.1| - 0.00088 19.2 0.4 0.21 11.5 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.6 gi|312137503|ref|YP_004004840.1| - 0.0012 18.7 0.9 0.29 10.8 0.2 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_24 PF13479.6 gi|312137503|ref|YP_004004840.1| - 0.0012 18.6 0.4 0.87 9.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|312137503|ref|YP_004004840.1| - 0.0015 18.5 0.3 0.98 9.3 0.1 2.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|312137503|ref|YP_004004840.1| - 0.0021 18.5 2.4 17 5.9 0.0 4.3 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|312137503|ref|YP_004004840.1| - 0.0038 16.5 2.6 2 7.5 0.0 2.8 2 1 0 2 2 2 2 NB-ARC domain cobW PF02492.19 gi|312137503|ref|YP_004004840.1| - 0.004 16.8 1.3 0.77 9.3 0.0 2.9 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|312137503|ref|YP_004004840.1| - 0.0042 17.2 0.7 3.8 7.7 0.0 3.2 4 0 0 4 4 2 1 AAA domain IstB_IS21 PF01695.17 gi|312137503|ref|YP_004004840.1| - 0.0065 16.2 0.6 2.5 7.8 0.0 3.7 4 0 0 4 4 4 1 IstB-like ATP binding protein PRK PF00485.18 gi|312137503|ref|YP_004004840.1| - 0.0068 16.2 0.0 0.61 9.8 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 gi|312137503|ref|YP_004004840.1| - 0.0078 16.2 0.8 5.4 7.0 0.1 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|312137503|ref|YP_004004840.1| - 0.0098 15.6 0.0 1.7 8.4 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 gi|312137503|ref|YP_004004840.1| - 0.019 13.6 0.3 2.1 6.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|312137503|ref|YP_004004840.1| - 0.02 14.8 3.3 3 7.7 0.5 2.6 2 0 0 2 2 2 0 NACHT domain KdpD PF02702.17 gi|312137503|ref|YP_004004840.1| - 0.022 14.3 0.7 4.5 6.7 0.0 2.8 3 0 0 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain Roc PF08477.13 gi|312137503|ref|YP_004004840.1| - 0.024 14.9 0.3 4.6 7.5 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|312137503|ref|YP_004004840.1| - 0.026 14.8 0.4 10 6.3 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|312137503|ref|YP_004004840.1| - 0.063 13.3 2.9 8.6 6.4 0.0 3.8 3 1 1 4 4 4 0 AAA domain Zeta_toxin PF06414.12 gi|312137503|ref|YP_004004840.1| - 0.13 11.6 0.0 2.2 7.5 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin GTP_EFTU PF00009.27 gi|312137503|ref|YP_004004840.1| - 0.18 11.3 1.9 1.3 8.5 0.1 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain ATP-synt_ab PF00006.25 gi|312137503|ref|YP_004004840.1| - 0.31 10.7 1.0 24 4.5 0.1 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_pol_Rpb5_C PF01191.19 gi|312137503|ref|YP_004004840.1| - 0.36 10.7 2.4 24 4.9 0.1 3.9 3 1 0 3 3 3 0 RNA polymerase Rpb5, C-terminal domain ABC_ATPase PF09818.9 gi|312137503|ref|YP_004004840.1| - 0.45 9.2 7.3 13 4.4 0.4 3.7 4 0 0 4 4 4 0 Predicted ATPase of the ABC class ATPase PF06745.13 gi|312137503|ref|YP_004004840.1| - 1.4 8.2 9.5 10 5.4 0.5 4.1 4 1 0 4 4 4 0 KaiC AAA_19 PF13245.6 gi|312137503|ref|YP_004004840.1| - 4.6 7.6 6.1 34 4.8 0.1 3.1 2 1 0 2 2 2 0 AAA domain Flavin_Reduct PF01613.18 gi|312137504|ref|YP_004004841.1| - 1.8e-25 89.8 0.0 2.2e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|312137504|ref|YP_004004841.1| - 0.002 17.9 0.2 0.0029 17.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Putative_PNPOx PF01243.20 gi|312137504|ref|YP_004004841.1| - 0.022 15.0 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.26 gi|312137505|ref|YP_004004842.1| - 4.4e-26 92.1 0.0 5.2e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family HTH_24 PF13412.6 gi|312137506|ref|YP_004004843.1| - 1.2e-11 43.9 1.5 1.6e-11 43.6 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|312137506|ref|YP_004004843.1| - 9.8e-11 41.4 0.0 8e-10 38.5 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|312137506|ref|YP_004004843.1| - 3.4e-07 30.1 0.4 1e-06 28.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|312137506|ref|YP_004004843.1| - 1.9e-05 24.6 0.2 4.8e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|312137506|ref|YP_004004843.1| - 2.1e-05 24.6 0.2 8.3e-05 22.7 0.2 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|312137506|ref|YP_004004843.1| - 2.7e-05 24.6 0.0 7.1e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|312137506|ref|YP_004004843.1| - 3.2e-05 23.8 0.2 9e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|312137506|ref|YP_004004843.1| - 0.00016 21.8 0.0 0.0008 19.5 0.0 2.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|312137506|ref|YP_004004843.1| - 0.00038 20.3 0.1 0.00095 19.1 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|312137506|ref|YP_004004843.1| - 0.00056 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|312137506|ref|YP_004004843.1| - 0.0021 17.9 0.0 0.0043 16.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|312137506|ref|YP_004004843.1| - 0.0042 16.8 0.1 0.011 15.5 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|312137506|ref|YP_004004843.1| - 0.008 15.8 0.1 0.021 14.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family S10_plectin PF03501.15 gi|312137506|ref|YP_004004843.1| - 0.0085 16.1 0.1 0.079 13.0 0.0 2.2 2 0 0 2 2 2 1 Plectin/S10 domain TrmB PF01978.19 gi|312137506|ref|YP_004004843.1| - 0.011 15.7 1.7 0.019 14.8 0.4 2.3 2 1 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|312137506|ref|YP_004004843.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|312137506|ref|YP_004004843.1| - 0.024 14.5 0.3 0.085 12.7 0.2 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_3 PF01381.22 gi|312137506|ref|YP_004004843.1| - 0.027 14.5 0.1 0.14 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix Mnd1 PF03962.15 gi|312137506|ref|YP_004004843.1| - 0.028 14.7 1.4 0.1 12.9 0.1 2.5 3 0 0 3 3 3 0 Mnd1 HTH domain B-block_TFIIIC PF04182.12 gi|312137506|ref|YP_004004843.1| - 0.044 14.0 0.1 0.085 13.0 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Mrr_N PF14338.6 gi|312137506|ref|YP_004004843.1| - 0.052 13.7 0.2 0.14 12.3 0.2 1.8 1 1 0 1 1 1 0 Mrr N-terminal domain Rrf2 PF02082.20 gi|312137506|ref|YP_004004843.1| - 0.067 13.5 0.1 0.25 11.7 0.0 2.0 2 0 0 2 2 1 0 Transcriptional regulator MMR_HSR1_C PF08438.10 gi|312137506|ref|YP_004004843.1| - 0.11 13.1 0.2 0.82 10.3 0.1 2.2 2 0 0 2 2 2 0 GTPase of unknown function C-terminal DHHA1 PF02272.19 gi|312137507|ref|YP_004004844.1| - 1.3e-19 71.0 0.0 3e-19 69.8 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|312137507|ref|YP_004004844.1| - 0.0042 17.3 0.0 0.0073 16.5 0.0 1.4 1 0 0 1 1 1 1 DHH family SRP19 PF01922.17 gi|312137508|ref|YP_004004845.1| - 6.6e-26 91.1 1.8 7.6e-26 90.9 1.8 1.0 1 0 0 1 1 1 1 SRP19 protein Ribonuclease_3 PF00636.26 gi|312137508|ref|YP_004004845.1| - 0.092 13.4 0.1 0.099 13.3 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease III domain HEM4 PF02602.15 gi|312137509|ref|YP_004004846.1| - 9.9e-47 159.2 0.1 1.3e-46 158.8 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD BRCT PF00533.26 gi|312137509|ref|YP_004004846.1| - 0.033 14.6 0.1 4 7.9 0.0 2.4 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain TusA PF01206.17 gi|312137509|ref|YP_004004846.1| - 0.034 14.0 0.4 3.7 7.5 0.1 2.8 2 0 0 2 2 2 0 Sulfurtransferase TusA XPG_I PF00867.18 gi|312137509|ref|YP_004004846.1| - 0.051 13.9 0.1 0.18 12.2 0.0 1.9 2 1 0 2 2 2 0 XPG I-region TP_methylase PF00590.20 gi|312137510|ref|YP_004004847.1| - 6.7e-50 170.0 0.0 7.7e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|312137510|ref|YP_004004847.1| - 0.028 14.8 0.3 0.099 13.0 0.1 2.0 1 1 1 2 2 2 0 Radical SAM superfamily CTV_P23 PF04808.12 gi|312137510|ref|YP_004004847.1| - 0.16 11.5 0.1 0.24 10.9 0.1 1.2 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein GATase_5 PF13507.6 gi|312137511|ref|YP_004004848.1| - 3.5e-39 134.5 0.0 4.5e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|312137511|ref|YP_004004848.1| - 5.5e-08 32.8 0.1 1.9e-07 31.1 0.0 1.7 1 1 1 2 2 2 1 DJ-1/PfpI family GATase PF00117.28 gi|312137511|ref|YP_004004848.1| - 1e-07 32.0 0.0 1.3e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|312137511|ref|YP_004004848.1| - 1.2e-06 28.3 0.0 2.2e-06 27.4 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|312137511|ref|YP_004004848.1| - 0.00029 20.7 0.0 0.00075 19.4 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|312137511|ref|YP_004004848.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.6 2 0 0 2 2 2 0 Peptidase C26 PurS PF02700.14 gi|312137512|ref|YP_004004849.1| - 1.9e-25 88.8 0.1 2.1e-25 88.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SAICAR_synt PF01259.18 gi|312137513|ref|YP_004004850.1| - 8.7e-66 222.1 0.7 1.1e-65 221.8 0.7 1.1 1 0 0 1 1 1 1 SAICAR synthetase YxiJ PF14176.6 gi|312137513|ref|YP_004004850.1| - 0.017 15.6 0.2 0.37 11.3 0.0 2.3 2 0 0 2 2 2 0 YxiJ-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermus_fervidus_DSM_2088_uid60167/NC_014658.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermus_fervidus_DSM_2088_uid60167/NC_014658.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermus_fervidus_DSM_2088_uid60167/NC_014658.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermus_fervidus_DSM_2088_uid60167/NC_014658.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:02:06 2019 # [ok]