# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|304313779|ref|YP_003848926.1| - 3.6e-20 71.4 0.4 3.6e-20 71.4 0.3 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|304313779|ref|YP_003848926.1| - 7.5e-11 42.2 0.0 1.5e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|304313779|ref|YP_003848926.1| - 3.1e-08 33.8 0.1 1.5e-07 31.5 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|304313779|ref|YP_003848926.1| - 7.3e-07 29.4 0.0 1.3e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|304313779|ref|YP_003848926.1| - 0.0015 17.4 0.0 0.0023 16.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|304313779|ref|YP_003848926.1| - 0.0028 18.4 0.4 0.0082 16.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|304313779|ref|YP_003848926.1| - 0.0072 16.6 0.0 0.02 15.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|304313779|ref|YP_003848926.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|304313779|ref|YP_003848926.1| - 0.013 15.2 0.1 0.043 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DEAD PF00270.24 gi|304313779|ref|YP_003848926.1| - 0.015 14.7 1.9 0.61 9.5 0.2 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase DUF87 PF01935.12 gi|304313779|ref|YP_003848926.1| - 0.018 14.8 0.1 9 6.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function DUF87 E2F_TDP PF02319.15 gi|304313779|ref|YP_003848926.1| - 0.022 14.3 0.1 0.069 12.7 0.0 1.8 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain DUF2075 PF09848.4 gi|304313779|ref|YP_003848926.1| - 0.033 13.1 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|304313779|ref|YP_003848926.1| - 0.05 13.1 0.6 0.11 12.1 0.4 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304313779|ref|YP_003848926.1| - 0.057 12.8 0.0 0.3 10.4 0.0 1.9 1 1 1 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|304313779|ref|YP_003848926.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|304313779|ref|YP_003848926.1| - 0.087 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|304313779|ref|YP_003848926.1| - 0.11 11.4 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.10 gi|304313779|ref|YP_003848926.1| - 0.11 12.3 0.1 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Torsin PF06309.6 gi|304313779|ref|YP_003848926.1| - 0.14 12.0 0.0 0.39 10.5 0.0 1.7 2 0 0 2 2 2 0 Torsin OTCace_N PF02729.16 gi|304313780|ref|YP_003848927.1| - 8.3e-45 151.9 0.0 3.3e-44 149.9 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|304313780|ref|YP_003848927.1| - 2e-37 128.5 0.0 3.4e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GCD14 PF08704.5 gi|304313781|ref|YP_003848928.1| - 6.4e-32 110.9 0.0 5e-29 101.5 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|304313781|ref|YP_003848928.1| - 1.2e-10 41.2 0.0 1.6e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|304313781|ref|YP_003848928.1| - 6.8e-10 38.8 0.0 9e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|304313781|ref|YP_003848928.1| - 2.6e-08 34.4 0.0 4.1e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304313781|ref|YP_003848928.1| - 2.7e-07 30.1 0.0 4.3e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|304313781|ref|YP_003848928.1| - 2.3e-05 24.4 0.0 3.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304313781|ref|YP_003848928.1| - 2.7e-05 23.3 0.1 4.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|304313781|ref|YP_003848928.1| - 4.7e-05 23.6 0.0 7.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|304313781|ref|YP_003848928.1| - 0.00039 19.5 0.0 0.00055 19.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|304313781|ref|YP_003848928.1| - 0.0033 17.8 0.0 0.0054 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|304313781|ref|YP_003848928.1| - 0.0056 15.7 0.0 0.0087 15.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|304313781|ref|YP_003848928.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|304313781|ref|YP_003848928.1| - 0.022 15.5 0.0 0.044 14.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304313781|ref|YP_003848928.1| - 0.031 14.7 0.0 0.061 13.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|304313781|ref|YP_003848928.1| - 0.035 13.1 0.0 0.054 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MetW PF07021.7 gi|304313781|ref|YP_003848928.1| - 0.12 11.7 0.1 0.22 10.8 0.1 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ERCC4 PF02732.10 gi|304313782|ref|YP_003848929.1| - 3e-27 95.1 0.0 6e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|304313782|ref|YP_003848929.1| - 2e-21 75.6 0.4 6.4e-21 74.0 0.3 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|304313782|ref|YP_003848929.1| - 2e-19 69.7 0.0 7.8e-19 67.7 0.0 2.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|304313782|ref|YP_003848929.1| - 3e-12 46.2 0.1 6.5e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|304313782|ref|YP_003848929.1| - 1.7e-11 44.2 0.0 3.6e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|304313782|ref|YP_003848929.1| - 2.9e-09 36.9 0.4 2.3e-08 34.0 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|304313782|ref|YP_003848929.1| - 4.8e-05 22.8 0.1 0.00014 21.3 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.11 gi|304313782|ref|YP_003848929.1| - 0.0057 15.9 0.2 0.023 13.9 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein 5_3_exonuc PF01367.15 gi|304313782|ref|YP_003848929.1| - 0.0095 16.1 0.1 0.035 14.3 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold AAA_19 PF13245.1 gi|304313782|ref|YP_003848929.1| - 0.012 15.3 0.3 0.068 12.9 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain HHH_8 PF14716.1 gi|304313782|ref|YP_003848929.1| - 0.035 14.2 0.2 1.5 9.0 0.1 3.3 3 1 1 4 4 4 0 Helix-hairpin-helix domain DrsE PF02635.10 gi|304313784|ref|YP_003848931.1| - 1.4e-18 67.1 0.0 2.1e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|304313784|ref|YP_003848931.1| - 3e-12 46.5 5.5 7.6e-07 29.0 0.2 2.6 2 1 1 3 3 3 2 DsrE/DsrF/DrsH-like family TusA PF01206.12 gi|304313784|ref|YP_003848931.1| - 9.2e-09 34.7 0.0 2.5e-08 33.4 0.0 1.8 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox PF00070.22 gi|304313784|ref|YP_003848931.1| - 0.018 15.4 0.2 8.5 6.8 0.0 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase OapA PF04225.7 gi|304313784|ref|YP_003848931.1| - 0.063 13.1 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain Cas_Cas2CT1978 PF09707.5 gi|304313784|ref|YP_003848931.1| - 0.084 12.8 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cas2CT1978) DUF169 PF02596.10 gi|304313785|ref|YP_003848932.1| - 4.8e-65 218.9 0.1 5.4e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 GAF_2 PF13185.1 gi|304313786|ref|YP_003848933.1| - 4.7e-15 56.3 0.0 1.8e-11 44.6 0.0 2.7 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|304313786|ref|YP_003848933.1| - 5.7e-11 42.6 0.2 2.4e-05 24.4 0.0 2.8 2 1 0 2 2 2 2 GAF domain GAF PF01590.21 gi|304313786|ref|YP_003848933.1| - 9.5e-05 22.5 0.0 0.003 17.6 0.0 2.6 2 0 0 2 2 2 1 GAF domain Penicillinase_R PF03965.11 gi|304313786|ref|YP_003848933.1| - 0.0058 16.6 0.0 0.023 14.7 0.0 2.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|304313786|ref|YP_003848933.1| - 0.025 14.1 0.1 0.44 10.1 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|304313786|ref|YP_003848933.1| - 0.061 12.9 0.1 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 HTH domain TrmB PF01978.14 gi|304313786|ref|YP_003848933.1| - 0.084 12.5 0.1 0.44 10.2 0.0 2.3 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF521 PF04412.8 gi|304313787|ref|YP_003848934.1| - 2.4e-158 526.9 0.0 2.6e-158 526.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DHHA1 PF02272.14 gi|304313788|ref|YP_003848935.1| - 2.8e-14 52.5 0.8 7.8e-14 51.1 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|304313788|ref|YP_003848935.1| - 1.8e-12 47.1 0.0 2.7e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 DHH family XylR_N PF06505.6 gi|304313788|ref|YP_003848935.1| - 0.038 13.4 0.0 1.1 8.7 0.0 2.5 2 1 0 2 2 2 0 Activator of aromatic catabolism Ribosomal_S15 PF00312.17 gi|304313789|ref|YP_003848936.1| - 1.3e-22 79.3 0.1 1.7e-22 78.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|304313789|ref|YP_003848936.1| - 4e-17 61.7 0.0 1e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain HTH_23 PF13384.1 gi|304313789|ref|YP_003848936.1| - 0.11 12.1 0.2 12 5.6 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain Ham1p_like PF01725.11 gi|304313790|ref|YP_003848937.1| - 1e-52 178.2 0.0 1.2e-52 178.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Methyltransf_17 PF12692.2 gi|304313790|ref|YP_003848937.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase Peptidase_M22 PF00814.20 gi|304313791|ref|YP_003848938.1| - 3.1e-92 308.8 0.0 4.3e-92 308.3 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|304313791|ref|YP_003848938.1| - 5.8e-09 35.3 0.0 2.9e-08 33.0 0.0 2.0 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|304313791|ref|YP_003848938.1| - 7e-09 35.7 0.1 0.00011 21.9 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|304313791|ref|YP_003848938.1| - 5.6e-08 32.3 0.0 9.7e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|304313791|ref|YP_003848938.1| - 7.2e-07 28.6 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|304313791|ref|YP_003848938.1| - 0.0012 18.1 0.1 0.0029 16.8 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|304313791|ref|YP_003848938.1| - 0.0042 16.1 0.0 0.0063 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase DBI_PRT PF02277.12 gi|304313792|ref|YP_003848939.1| - 9.6e-27 93.9 0.8 9.6e-27 93.9 0.6 1.4 2 0 0 2 2 2 1 Phosphoribosyltransferase DUF95 PF01944.12 gi|304313793|ref|YP_003848940.1| - 0.003 17.2 22.7 0.0062 16.1 15.7 1.6 1 1 0 1 1 1 1 Integral membrane protein DUF95 DUF2976 PF11190.3 gi|304313793|ref|YP_003848940.1| - 0.01 15.3 0.4 0.01 15.3 0.3 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF2976) zf-DHHC PF01529.15 gi|304313793|ref|YP_003848940.1| - 2 7.7 4.7 3.5 6.9 3.3 1.5 1 1 0 1 1 1 0 DHHC palmitoyltransferase BacA PF02673.13 gi|304313794|ref|YP_003848941.1| - 6.7e-86 287.6 13.4 7.7e-86 287.4 9.3 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Aminotran_4 PF01063.14 gi|304313795|ref|YP_003848942.1| - 1.8e-49 168.3 0.0 2.1e-49 168.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV Mrr_cat PF04471.7 gi|304313797|ref|YP_003848944.1| - 2.5e-16 59.4 0.3 3.4e-16 59.0 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.1 gi|304313797|ref|YP_003848944.1| - 0.037 13.9 0.2 0.074 12.9 0.1 1.5 2 0 0 2 2 2 0 Restriction endonuclease SurE PF01975.12 gi|304313798|ref|YP_003848945.1| - 6.4e-62 208.3 0.0 7.8e-62 208.0 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF4405 PF14358.1 gi|304313799|ref|YP_003848946.1| - 0.01 15.9 7.9 0.017 15.2 5.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) MASE1 PF05231.9 gi|304313799|ref|YP_003848946.1| - 0.087 11.8 6.4 0.11 11.5 4.4 1.0 1 0 0 1 1 1 0 MASE1 Ferric_reduct PF01794.14 gi|304313799|ref|YP_003848946.1| - 0.1 12.6 8.2 0.082 13.0 4.2 1.8 1 1 1 2 2 2 0 Ferric reductase like transmembrane component Cu-oxidase_2 PF07731.9 gi|304313799|ref|YP_003848946.1| - 0.11 12.0 0.1 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 Multicopper oxidase UPF0233 PF06781.7 gi|304313799|ref|YP_003848946.1| - 1.6 8.4 6.4 1.1 8.9 2.5 1.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) Cytochrom_B_N PF00033.14 gi|304313799|ref|YP_003848946.1| - 1.6 8.0 9.2 1.6 8.0 6.0 1.3 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.1 gi|304313800|ref|YP_003848947.1| - 0.024 14.7 4.3 0.051 13.7 3.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) VKOR PF07884.9 gi|304313800|ref|YP_003848947.1| - 0.24 11.2 4.4 0.42 10.4 2.9 1.5 1 1 0 1 1 1 0 Vitamin K epoxide reductase family DUF2628 PF10947.3 gi|304313800|ref|YP_003848947.1| - 0.74 9.6 5.2 1.4 8.7 3.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) HTH_5 PF01022.15 gi|304313801|ref|YP_003848948.1| - 2.8e-09 36.5 0.1 4.5e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|304313801|ref|YP_003848948.1| - 8.4e-08 31.9 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|304313801|ref|YP_003848948.1| - 0.00041 19.6 0.1 0.00068 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AAT PF03417.11 gi|304313801|ref|YP_003848948.1| - 0.00097 18.6 0.1 0.0015 18.0 0.0 1.3 1 1 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Phage_rep_org_N PF09681.5 gi|304313801|ref|YP_003848948.1| - 0.0015 18.1 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|304313801|ref|YP_003848948.1| - 0.002 17.7 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|304313801|ref|YP_003848948.1| - 0.004 16.7 0.0 0.007 15.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|304313801|ref|YP_003848948.1| - 0.0059 16.2 0.1 0.014 15.0 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|304313801|ref|YP_003848948.1| - 0.0085 16.2 0.1 0.028 14.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_45 PF14947.1 gi|304313801|ref|YP_003848948.1| - 0.016 15.0 0.2 0.043 13.6 0.1 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|304313801|ref|YP_003848948.1| - 0.02 14.6 0.2 0.082 12.7 0.1 2.0 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|304313801|ref|YP_003848948.1| - 0.09 12.6 0.1 0.2 11.5 0.0 1.6 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Acetyltransf_7 PF13508.1 gi|304313802|ref|YP_003848949.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CbiQ PF02361.11 gi|304313802|ref|YP_003848949.1| - 0.7 9.4 6.8 0.72 9.3 4.7 1.1 1 0 0 1 1 1 0 Cobalt transport protein DUF2207 PF09972.4 gi|304313802|ref|YP_003848949.1| - 1.7 7.1 3.5 1.6 7.2 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) LSM PF01423.17 gi|304313803|ref|YP_003848950.1| - 2.4e-07 30.1 0.9 5.1e-07 29.1 0.6 1.6 1 1 0 1 1 1 1 LSM domain DUF150 PF02576.12 gi|304313803|ref|YP_003848950.1| - 0.03 13.9 0.1 0.032 13.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised BCR, YhbC family COG0779 COP23 PF14218.1 gi|304313803|ref|YP_003848950.1| - 0.069 12.7 0.1 0.069 12.6 0.0 1.1 1 0 0 1 1 1 0 Circadian oscillating protein COP23 Acetate_kinase PF00871.12 gi|304313804|ref|YP_003848951.1| - 0.071 11.6 0.1 0.092 11.2 0.0 1.3 1 0 0 1 1 1 0 Acetokinase family IlvN PF07991.7 gi|304313805|ref|YP_003848952.1| - 1e-72 242.8 0.4 1.4e-72 242.3 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|304313805|ref|YP_003848952.1| - 2.4e-56 189.6 0.6 3.4e-56 189.2 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|304313805|ref|YP_003848952.1| - 2.1e-08 34.4 0.2 5.2e-08 33.2 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|304313805|ref|YP_003848952.1| - 6.3e-07 29.3 0.0 1.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|304313805|ref|YP_003848952.1| - 7.4e-06 25.2 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|304313805|ref|YP_003848952.1| - 0.0005 19.9 0.1 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FMO-like PF00743.14 gi|304313805|ref|YP_003848952.1| - 0.057 11.6 0.0 0.087 11.0 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.18 gi|304313805|ref|YP_003848952.1| - 0.085 12.5 0.8 3.2 7.4 0.1 2.8 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|304313805|ref|YP_003848952.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain ALS_ss_C PF10369.4 gi|304313806|ref|YP_003848953.1| - 2.8e-32 110.2 0.7 5e-32 109.4 0.1 1.7 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|304313806|ref|YP_003848953.1| - 1.2e-22 79.4 0.2 6.4e-22 77.1 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|304313806|ref|YP_003848953.1| - 2.3e-14 52.4 0.2 5.6e-14 51.2 0.1 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|304313806|ref|YP_003848953.1| - 0.00023 21.4 0.1 0.00051 20.3 0.1 1.5 1 0 0 1 1 1 1 ACT domain Saccharop_dh_N PF04455.7 gi|304313806|ref|YP_003848953.1| - 0.0094 16.0 0.2 0.073 13.1 0.0 2.2 1 1 2 3 3 3 1 LOR/SDH bifunctional enzyme conserved region NIL PF09383.5 gi|304313806|ref|YP_003848953.1| - 0.061 12.8 0.0 0.73 9.4 0.0 2.3 2 0 0 2 2 2 0 NIL domain TPP_enzyme_N PF02776.13 gi|304313807|ref|YP_003848954.1| - 2.7e-66 222.2 0.1 1e-61 207.4 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|304313807|ref|YP_003848954.1| - 1.1e-49 167.9 0.0 3.3e-49 166.3 0.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|304313807|ref|YP_003848954.1| - 2.1e-49 166.8 0.2 6.8e-49 165.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Strumpellin PF10266.4 gi|304313807|ref|YP_003848954.1| - 0.12 9.7 0.0 0.16 9.3 0.0 1.0 1 0 0 1 1 1 0 Hereditary spastic paraplegia protein strumpellin GARS_A PF01071.14 gi|304313808|ref|YP_003848955.1| - 3.8e-65 219.1 0.0 5.5e-65 218.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|304313808|ref|YP_003848955.1| - 1.6e-28 99.0 0.1 3.1e-28 98.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|304313808|ref|YP_003848955.1| - 3.4e-20 72.5 0.0 7.2e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|304313808|ref|YP_003848955.1| - 2.9e-19 69.0 0.5 7.7e-19 67.6 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.9 gi|304313808|ref|YP_003848955.1| - 6.7e-06 26.0 0.0 6.5e-05 22.8 0.0 2.4 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|304313808|ref|YP_003848955.1| - 1.6e-05 23.8 0.0 0.00011 21.1 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|304313808|ref|YP_003848955.1| - 0.00096 18.3 0.0 0.0062 15.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.11 gi|304313808|ref|YP_003848955.1| - 0.036 13.1 0.0 0.069 12.2 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.17 gi|304313808|ref|YP_003848955.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain OTCace PF00185.19 gi|304313809|ref|YP_003848956.1| - 3.1e-57 192.8 0.0 9.5e-57 191.2 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|304313809|ref|YP_003848956.1| - 1.1e-44 151.5 0.0 1.6e-44 150.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain tRNA-synt_1d PF00750.14 gi|304313810|ref|YP_003848957.1| - 3.1e-61 207.1 0.0 4.2e-61 206.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|304313810|ref|YP_003848957.1| - 7.5e-33 113.0 0.0 1.6e-32 111.9 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|304313810|ref|YP_003848957.1| - 1.9e-19 69.9 0.1 1.5e-18 67.1 0.0 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|304313810|ref|YP_003848957.1| - 8.2e-11 41.1 0.1 0.00022 20.0 0.0 3.4 4 0 0 4 4 4 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|304313810|ref|YP_003848957.1| - 7.4e-07 28.1 0.0 0.0055 15.4 0.0 4.0 4 0 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|304313810|ref|YP_003848957.1| - 0.00014 21.0 0.0 0.00053 19.1 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|304313810|ref|YP_003848957.1| - 0.0041 15.2 0.0 0.0078 14.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Peptidase_S24 PF00717.18 gi|304313811|ref|YP_003848958.1| - 3.9e-09 36.0 0.2 5.8e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like Amidase_6 PF12671.2 gi|304313811|ref|YP_003848958.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.5 1 1 0 1 1 1 0 Putative amidase domain ILVD_EDD PF00920.16 gi|304313812|ref|YP_003848959.1| - 2.7e-218 725.6 8.0 3e-218 725.4 5.6 1.0 1 0 0 1 1 1 1 Dehydratase family DUF2335 PF10097.4 gi|304313812|ref|YP_003848959.1| - 0.12 12.0 0.1 0.52 9.9 0.1 2.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2335) DUF4010 PF13194.1 gi|304313813|ref|YP_003848960.1| - 2e-64 216.7 23.1 2e-64 216.7 16.0 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|304313813|ref|YP_003848960.1| - 4.1e-21 75.2 8.5 4.1e-21 75.2 5.9 2.8 3 1 0 3 3 3 1 MgtC family Cupin_2 PF07883.6 gi|304313814|ref|YP_003848961.1| - 1.5e-09 37.2 0.0 1.9e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|304313814|ref|YP_003848961.1| - 0.00019 21.1 0.0 0.00023 20.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|304313814|ref|YP_003848961.1| - 0.0012 18.3 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|304313814|ref|YP_003848961.1| - 0.0039 16.5 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1255 PF06865.6 gi|304313814|ref|YP_003848961.1| - 0.011 15.9 0.0 0.014 15.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) Cupin_6 PF12852.2 gi|304313814|ref|YP_003848961.1| - 0.024 14.2 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 Cupin AraC_binding_2 PF14525.1 gi|304313814|ref|YP_003848961.1| - 0.061 12.8 0.0 0.069 12.7 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Ectoine_synth PF06339.7 gi|304313814|ref|YP_003848961.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 1 0 1 1 1 0 Ectoine synthase Prismane PF03063.15 gi|304313815|ref|YP_003848962.1| - 4.6e-117 391.5 0.0 6e-99 331.7 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Rubredoxin PF00301.15 gi|304313815|ref|YP_003848962.1| - 1.8e-23 82.1 4.2 3.6e-23 81.1 2.9 1.6 1 0 0 1 1 1 1 Rubredoxin zf-RING_3 PF14369.1 gi|304313815|ref|YP_003848962.1| - 0.12 12.3 3.4 0.44 10.5 0.5 2.5 2 0 0 2 2 2 0 zinc-finger TrmB PF01978.14 gi|304313816|ref|YP_003848963.1| - 3.8e-22 77.7 0.0 7.3e-22 76.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|304313816|ref|YP_003848963.1| - 4.7e-05 22.8 0.0 0.00011 21.6 0.0 1.7 1 1 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|304313816|ref|YP_003848963.1| - 0.00059 19.8 0.0 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator HTH_42 PF06224.7 gi|304313816|ref|YP_003848963.1| - 0.0067 15.7 0.8 0.0078 15.5 0.1 1.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Regulator_TrmB PF11495.3 gi|304313816|ref|YP_003848963.1| - 0.0079 15.1 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.2 gi|304313816|ref|YP_003848963.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|304313816|ref|YP_003848963.1| - 0.043 13.6 0.0 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|304313816|ref|YP_003848963.1| - 0.046 13.1 0.0 0.14 11.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family NUC194 PF08163.7 gi|304313816|ref|YP_003848963.1| - 0.047 12.5 0.0 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 NUC194 domain HTH_CodY PF08222.6 gi|304313816|ref|YP_003848963.1| - 0.077 12.3 0.1 0.15 11.3 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_24 PF13412.1 gi|304313816|ref|YP_003848963.1| - 0.11 11.8 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding tRNA-Thr_ED PF08915.6 gi|304313817|ref|YP_003848964.1| - 4.6e-57 191.8 0.0 8.5e-57 190.9 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|304313817|ref|YP_003848964.1| - 4e-23 81.1 0.3 9.5e-23 79.9 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|304313817|ref|YP_003848964.1| - 1.1e-22 80.4 0.2 2e-22 79.5 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.2 gi|304313817|ref|YP_003848964.1| - 0.014 14.5 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs Band_7 PF01145.20 gi|304313817|ref|YP_003848964.1| - 0.03 14.2 0.1 12 5.7 0.0 2.6 3 0 0 3 3 3 0 SPFH domain / Band 7 family Glycoamylase PF10091.4 gi|304313817|ref|YP_003848964.1| - 0.056 12.5 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative glucoamylase CbiA PF01656.18 gi|304313818|ref|YP_003848965.1| - 1.6e-38 132.0 0.0 1.9e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|304313818|ref|YP_003848965.1| - 5.4e-13 49.1 0.1 8.5e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|304313818|ref|YP_003848965.1| - 2.2e-11 43.3 0.1 5.3e-10 38.8 0.1 2.2 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|304313818|ref|YP_003848965.1| - 2.4e-08 33.5 0.0 2.8e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|304313818|ref|YP_003848965.1| - 8.8e-06 25.2 0.0 2.1e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|304313818|ref|YP_003848965.1| - 1.4e-05 24.2 0.8 5.7e-05 22.3 0.1 1.9 1 1 1 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|304313818|ref|YP_003848965.1| - 0.064 12.3 0.4 0.25 10.4 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein ATP_bind_1 PF03029.12 gi|304313818|ref|YP_003848965.1| - 0.071 12.6 0.2 0.18 11.2 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|304313818|ref|YP_003848965.1| - 0.13 12.0 0.1 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|304313818|ref|YP_003848965.1| - 0.15 11.4 0.0 0.4 10.1 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF3618 PF12277.3 gi|304313819|ref|YP_003848966.1| - 0.037 14.0 0.1 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) Radical_SAM PF04055.16 gi|304313820|ref|YP_003848967.1| - 2.5e-11 44.0 0.1 7.6e-11 42.4 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|304313820|ref|YP_003848967.1| - 0.00025 20.9 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|304313820|ref|YP_003848967.1| - 0.00044 20.3 0.0 0.0011 19.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Fer4_12 PF13353.1 gi|304313820|ref|YP_003848967.1| - 0.0073 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH PF00633.18 gi|304313820|ref|YP_003848967.1| - 0.0082 15.8 0.2 0.037 13.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|304313820|ref|YP_003848967.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif SAM_PNT PF02198.11 gi|304313820|ref|YP_003848967.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Sterile alpha motif (SAM)/Pointed domain DRP PF06044.7 gi|304313821|ref|YP_003848968.1| - 0.018 14.0 0.5 0.018 14.0 0.3 1.5 2 0 0 2 2 2 0 Dam-replacing family IBR PF01485.16 gi|304313821|ref|YP_003848968.1| - 1.1 9.1 9.9 2.9 7.8 6.9 2.0 1 1 0 1 1 1 0 IBR domain Prim_Zn_Ribbon PF08273.7 gi|304313821|ref|YP_003848968.1| - 2 8.5 15.9 0.053 13.6 6.6 1.7 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|304313821|ref|YP_003848968.1| - 2.1 8.6 7.4 0.76 10.1 3.3 1.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|304313821|ref|YP_003848968.1| - 2.5 8.0 13.1 0.85 9.5 4.4 2.9 1 1 2 3 3 3 0 AN1-like Zinc finger Transp_Tc5_C PF04236.10 gi|304313821|ref|YP_003848968.1| - 2.9 8.1 7.4 5.2 7.3 5.1 1.4 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain zf-ribbon_3 PF13248.1 gi|304313821|ref|YP_003848968.1| - 3.4 6.9 9.6 1.8 7.8 1.4 2.9 3 0 0 3 3 3 0 zinc-ribbon domain GATase_3 PF07685.9 gi|304313822|ref|YP_003848969.1| - 2.6e-31 108.3 0.0 3.9e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|304313822|ref|YP_003848969.1| - 3.2e-23 82.1 0.1 4.4e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|304313822|ref|YP_003848969.1| - 2.1e-14 53.6 1.2 7.8e-09 35.4 0.1 2.3 1 1 1 2 2 2 2 AAA domain DJ-1_PfpI PF01965.19 gi|304313822|ref|YP_003848969.1| - 0.001 18.5 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.14 gi|304313822|ref|YP_003848969.1| - 0.0047 16.5 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.12 gi|304313822|ref|YP_003848969.1| - 0.028 14.1 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 DUF1611 PF07755.6 gi|304313822|ref|YP_003848969.1| - 0.11 11.1 0.2 0.28 9.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) DUF70 PF01901.11 gi|304313823|ref|YP_003848970.1| - 2.2e-90 303.1 30.5 2.5e-90 302.9 21.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF70 Epimerase_2 PF02350.14 gi|304313824|ref|YP_003848971.1| - 8.7e-06 24.7 0.0 0.0025 16.6 0.0 2.3 2 0 0 2 2 2 2 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|304313824|ref|YP_003848971.1| - 0.00073 18.5 0.0 0.0012 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_tran_28_C PF04101.11 gi|304313824|ref|YP_003848971.1| - 0.0071 16.0 0.1 0.028 14.0 0.0 1.9 1 1 1 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|304313824|ref|YP_003848971.1| - 0.029 13.5 0.0 0.076 12.1 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase family 1 Glyco_trans_4_2 PF13477.1 gi|304313824|ref|YP_003848971.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Peptidase_C39 PF03412.10 gi|304313825|ref|YP_003848972.1| - 6.4e-36 123.0 0.0 7e-36 122.9 0.0 1.0 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.1 gi|304313825|ref|YP_003848972.1| - 3.3e-06 27.5 0.2 0.00043 20.6 0.0 2.1 1 1 1 2 2 2 2 Peptidase_C39 like family DUF3335 PF11814.3 gi|304313825|ref|YP_003848972.1| - 0.0006 19.0 0.2 0.093 11.8 0.1 2.7 1 1 1 2 2 2 2 Peptidase_C39 like family Phytochelatin PF05023.9 gi|304313825|ref|YP_003848972.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.3 1 1 0 1 1 1 0 Phytochelatin synthase Peptidase_C58 PF03543.9 gi|304313825|ref|YP_003848972.1| - 0.16 11.4 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen MTD PF01993.13 gi|304313826|ref|YP_003848973.1| - 2.1e-156 519.0 7.4 2.3e-156 518.8 5.1 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase GATase_4 PF13230.1 gi|304313827|ref|YP_003848974.1| - 1.3e-79 266.6 0.0 1.5e-79 266.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|304313827|ref|YP_003848974.1| - 2e-06 27.8 0.0 3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|304313827|ref|YP_003848974.1| - 0.00044 19.0 0.0 0.00084 18.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II IGPD PF00475.13 gi|304313828|ref|YP_003848975.1| - 1.7e-61 206.3 2.8 1.8e-61 206.2 1.5 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Fer4 PF00037.22 gi|304313829|ref|YP_003848976.1| - 2.2e-14 52.3 14.1 4.8e-08 32.2 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304313829|ref|YP_003848976.1| - 1.8e-10 40.1 15.3 2.2e-06 27.2 3.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304313829|ref|YP_003848976.1| - 3.4e-10 40.1 9.9 1.1e-05 25.7 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304313829|ref|YP_003848976.1| - 3.5e-10 39.9 36.4 6.2e-07 29.5 9.0 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304313829|ref|YP_003848976.1| - 4.1e-10 39.2 23.1 7e-09 35.3 9.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304313829|ref|YP_003848976.1| - 1.9e-09 38.1 9.5 3.6e-06 27.6 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304313829|ref|YP_003848976.1| - 4.2e-09 35.8 12.2 2.2e-06 27.2 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304313829|ref|YP_003848976.1| - 2.7e-07 30.5 24.2 9.9e-06 25.4 9.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304313829|ref|YP_003848976.1| - 2.9e-07 30.2 8.5 4.6e-07 29.5 5.9 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304313829|ref|YP_003848976.1| - 2.7e-06 27.2 10.1 0.00033 20.7 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304313829|ref|YP_003848976.1| - 4e-05 23.8 16.0 0.015 15.5 3.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304313829|ref|YP_003848976.1| - 8.6e-05 22.8 10.6 0.0026 18.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|304313829|ref|YP_003848976.1| - 0.00055 20.3 10.6 0.011 16.0 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304313829|ref|YP_003848976.1| - 0.00062 20.1 19.8 0.011 16.1 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304313829|ref|YP_003848976.1| - 0.003 18.0 13.9 0.26 11.8 9.5 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|304313829|ref|YP_003848976.1| - 0.0035 17.1 4.6 0.0054 16.5 3.2 1.3 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|304313829|ref|YP_003848976.1| - 0.15 11.9 6.9 1.3 8.9 4.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF866 PF05907.8 gi|304313829|ref|YP_003848976.1| - 0.3 10.5 4.1 0.36 10.2 2.8 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) DUF4001 PF13165.1 gi|304313829|ref|YP_003848976.1| - 0.67 9.6 6.4 0.83 9.3 1.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF4001) TOBE PF03459.12 gi|304313830|ref|YP_003848977.1| - 2.5e-22 78.7 0.3 1.4e-15 57.1 0.0 2.6 2 1 0 2 2 2 2 TOBE domain HTH_1 PF00126.22 gi|304313830|ref|YP_003848977.1| - 1.6e-09 37.3 0.1 2.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.5 gi|304313830|ref|YP_003848977.1| - 6.9e-06 25.9 0.2 0.33 10.9 0.0 3.0 2 1 0 2 2 2 2 TOBE domain HTH_28 PF13518.1 gi|304313830|ref|YP_003848977.1| - 0.00017 21.5 0.8 0.0003 20.6 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Antitoxin-MazE PF04014.13 gi|304313830|ref|YP_003848977.1| - 0.0049 16.5 1.9 0.034 13.8 0.1 2.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE HTH_23 PF13384.1 gi|304313830|ref|YP_003848977.1| - 0.0078 15.8 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|304313830|ref|YP_003848977.1| - 0.016 14.6 0.1 0.039 13.3 0.1 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|304313830|ref|YP_003848977.1| - 0.064 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Polysacc_synt PF01943.12 gi|304313831|ref|YP_003848978.1| - 4.2e-40 137.7 22.6 4.2e-40 137.7 15.7 3.1 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|304313831|ref|YP_003848978.1| - 1.5e-23 83.2 24.5 1.5e-23 83.2 17.0 4.3 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|304313831|ref|YP_003848978.1| - 4.3e-17 61.6 40.6 7.3e-17 60.9 28.2 1.3 1 1 0 1 1 1 1 MviN-like protein MatE PF01554.13 gi|304313831|ref|YP_003848978.1| - 4.8e-17 62.0 42.1 7.4e-12 45.1 11.6 3.4 3 1 0 3 3 3 2 MatE Polysacc_synt_3 PF13440.1 gi|304313831|ref|YP_003848978.1| - 3.2e-14 53.0 24.6 3.2e-14 53.0 17.1 2.7 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein FMN_red PF03358.10 gi|304313832|ref|YP_003848979.1| - 3.8e-31 107.6 0.0 5e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|304313832|ref|YP_003848979.1| - 1e-06 28.4 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|304313832|ref|YP_003848979.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) Fae PF08714.6 gi|304313833|ref|YP_003848980.1| - 5.2e-71 237.5 0.0 9.3e-71 236.7 0.0 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|304313833|ref|YP_003848980.1| - 2.7e-27 95.6 0.1 4.1e-27 95.0 0.1 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|304313833|ref|YP_003848980.1| - 0.001 18.2 0.3 0.0031 16.6 0.2 1.9 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|304313833|ref|YP_003848980.1| - 0.0013 18.0 0.7 0.058 12.6 0.0 2.3 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|304313833|ref|YP_003848980.1| - 0.068 12.6 0.0 0.27 10.7 0.0 1.9 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain EFG_IV PF03764.13 gi|304313833|ref|YP_003848980.1| - 0.087 12.3 0.0 18 4.9 0.0 2.6 2 0 0 2 2 2 0 Elongation factor G, domain IV DUF3317 PF11779.3 gi|304313834|ref|YP_003848981.1| - 0.15 11.4 0.2 0.2 11.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) DUF515 PF04415.7 gi|304313834|ref|YP_003848981.1| - 0.22 9.7 1.3 0.31 9.2 0.8 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF515) PALP PF00291.20 gi|304313835|ref|YP_003848982.1| - 2.4e-38 132.0 0.0 2.9e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1786 PF08735.5 gi|304313836|ref|YP_003848983.1| - 3.3e-90 301.6 0.6 5.1e-90 301.0 0.4 1.3 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) PHP_C PF13263.1 gi|304313837|ref|YP_003848984.1| - 4.7e-19 67.6 0.1 8.4e-19 66.8 0.1 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|304313837|ref|YP_003848984.1| - 3.1e-12 46.6 0.0 5.1e-12 45.9 0.0 1.5 1 1 0 1 1 1 1 PHP domain DUF63 PF01889.12 gi|304313838|ref|YP_003848985.1| - 7.7e-60 203.2 11.2 8.6e-60 203.1 7.8 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF4131 PF13567.1 gi|304313838|ref|YP_003848985.1| - 5.6 6.3 11.5 0.62 9.4 1.2 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) HMGL-like PF00682.14 gi|304313839|ref|YP_003848986.1| - 3.2e-80 269.2 0.2 6.1e-80 268.2 0.1 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|304313839|ref|YP_003848986.1| - 8e-37 125.9 3.7 1.4e-36 125.2 2.6 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|304313839|ref|YP_003848986.1| - 0.045 13.0 0.1 0.85 8.8 0.0 2.7 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel Oxidored_nitro PF00148.14 gi|304313840|ref|YP_003848987.1| - 1.6e-87 293.7 0.1 1.8e-87 293.5 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Alba PF01918.16 gi|304313841|ref|YP_003848988.1| - 6.1e-20 70.5 0.2 8.9e-20 70.0 0.1 1.3 1 1 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|304313841|ref|YP_003848988.1| - 0.0062 16.1 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P DUF1034 PF06280.7 gi|304313842|ref|YP_003848989.1| - 5.7 7.3 7.6 1.3 9.4 1.1 2.8 3 0 0 3 3 3 0 Fn3-like domain (DUF1034) Flavodoxin_5 PF12724.2 gi|304313843|ref|YP_003848990.1| - 1.6e-14 54.1 0.0 2.6e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Pyridox_oxidase PF01243.15 gi|304313843|ref|YP_003848990.1| - 2.1e-12 46.8 0.0 4.1e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|304313843|ref|YP_003848990.1| - 8.9e-09 35.3 0.0 1.5e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Flavodoxin_3 PF12641.2 gi|304313843|ref|YP_003848990.1| - 1.6e-08 34.1 0.0 2.8e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain PS_pyruv_trans PF04230.8 gi|304313843|ref|YP_003848990.1| - 0.0088 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase FMN_red PF03358.10 gi|304313843|ref|YP_003848990.1| - 0.012 15.1 0.0 0.031 13.7 0.0 1.6 1 1 0 1 1 1 0 NADPH-dependent FMN reductase TSA PF03249.8 gi|304313843|ref|YP_003848990.1| - 0.079 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Type specific antigen DrrA_P4M PF14860.1 gi|304313843|ref|YP_003848990.1| - 0.098 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain PQQ_3 PF13570.1 gi|304313844|ref|YP_003848991.1| - 3.1e-81 265.6 32.6 3.2e-13 49.4 3.4 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|304313844|ref|YP_003848991.1| - 2.9e-71 231.6 19.3 2.4e-10 39.4 0.1 8.2 8 0 0 8 8 8 8 PQQ enzyme repeat PQQ_2 PF13360.1 gi|304313844|ref|YP_003848991.1| - 1.5e-59 201.3 14.6 4.5e-23 81.9 0.8 3.9 1 1 3 4 4 4 4 PQQ-like domain DUF4394 PF14339.1 gi|304313844|ref|YP_003848991.1| - 0.0037 16.5 1.4 0.93 8.7 0.1 4.4 2 2 3 5 5 5 1 Domain of unknown function (DUF4394) WD40 PF00400.27 gi|304313844|ref|YP_003848991.1| - 0.023 14.6 4.9 1.7 8.6 0.0 5.0 6 0 0 6 6 6 0 WD domain, G-beta repeat ABC2_membrane_3 PF12698.2 gi|304313845|ref|YP_003848992.1| - 1.2e-45 156.0 15.1 1.4e-45 155.8 10.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|304313845|ref|YP_003848992.1| - 1.8e-38 131.8 24.8 1.7e-36 125.3 10.4 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|304313845|ref|YP_003848992.1| - 9.2e-28 96.8 1.5 1.4e-27 96.2 1.1 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|304313845|ref|YP_003848992.1| - 9e-08 31.5 15.1 1.8e-07 30.5 4.8 2.5 2 1 1 3 3 3 2 CcmB protein ABC2_membrane_5 PF13346.1 gi|304313845|ref|YP_003848992.1| - 0.03 13.6 20.6 0.012 14.9 7.4 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|304313846|ref|YP_003848993.1| - 8.5e-32 110.3 0.0 1.7e-31 109.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304313846|ref|YP_003848993.1| - 8.3e-17 62.0 0.3 2.3e-12 47.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|304313846|ref|YP_003848993.1| - 1.7e-06 28.4 0.3 6.3e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|304313846|ref|YP_003848993.1| - 0.0002 20.5 0.2 0.043 12.8 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|304313846|ref|YP_003848993.1| - 0.0011 18.8 0.0 0.011 15.6 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|304313846|ref|YP_003848993.1| - 0.003 16.8 0.2 0.6 9.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|304313846|ref|YP_003848993.1| - 0.0082 15.3 0.0 0.033 13.3 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|304313846|ref|YP_003848993.1| - 0.013 14.9 0.1 0.023 14.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|304313846|ref|YP_003848993.1| - 0.021 15.1 5.7 0.05 13.9 4.0 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|304313846|ref|YP_003848993.1| - 0.082 12.3 0.2 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain HAD PF12710.2 gi|304313846|ref|YP_003848993.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA PF00004.24 gi|304313846|ref|YP_003848993.1| - 0.14 12.3 1.3 0.85 9.8 0.2 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PadR PF03551.9 gi|304313847|ref|YP_003848994.1| - 5.5e-16 58.0 0.1 1.4e-15 56.8 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|304313847|ref|YP_003848994.1| - 0.009 15.8 0.1 0.023 14.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|304313847|ref|YP_003848994.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|304313847|ref|YP_003848994.1| - 0.038 13.6 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF505 PF04458.7 gi|304313847|ref|YP_003848994.1| - 0.085 10.9 0.0 0.091 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Cdc6_C PF09079.6 gi|304313847|ref|YP_003848994.1| - 0.091 12.4 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal AP_endonuc_2 PF01261.19 gi|304313848|ref|YP_003848995.1| - 4.1e-26 91.5 0.1 5.2e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1211 PF06736.6 gi|304313849|ref|YP_003848996.1| - 7.3e-25 86.9 1.3 1.3e-24 86.1 0.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1211) DrsE PF02635.10 gi|304313850|ref|YP_003848997.1| - 3.9e-24 85.0 0.0 4.3e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|304313850|ref|YP_003848997.1| - 0.0057 16.4 0.0 0.0062 16.3 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family 5_nucleotid_C PF02872.13 gi|304313851|ref|YP_003848998.1| - 3.5e-21 75.8 0.0 6.3e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|304313851|ref|YP_003848998.1| - 0.052 12.9 0.6 0.29 10.5 0.4 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase Tox-HDC PF15656.1 gi|304313851|ref|YP_003848998.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Toxin with a H, D/N and C signature Hydrolase PF00702.21 gi|304313852|ref|YP_003848999.1| - 5.9e-16 59.5 0.1 1.7e-15 58.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304313852|ref|YP_003848999.1| - 8e-12 45.7 0.2 4.8e-11 43.1 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304313852|ref|YP_003848999.1| - 8.7e-07 28.7 0.4 0.23 10.9 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|304313852|ref|YP_003848999.1| - 4.1e-05 23.8 0.0 0.0016 18.6 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|304313852|ref|YP_003848999.1| - 0.011 15.1 0.0 0.049 12.9 0.0 1.9 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.1 gi|304313852|ref|YP_003848999.1| - 0.018 14.9 0.0 0.25 11.2 0.0 2.5 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|304313852|ref|YP_003848999.1| - 0.026 14.1 0.0 0.5 9.9 0.0 2.2 1 1 1 2 2 2 0 Acid Phosphatase Hydrolase_like PF13242.1 gi|304313852|ref|YP_003848999.1| - 0.062 13.0 0.0 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 HAD-hyrolase-like Transketolase_C PF02780.15 gi|304313852|ref|YP_003848999.1| - 0.084 12.8 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Transketolase, C-terminal domain SPOUT_MTase_2 PF14419.1 gi|304313852|ref|YP_003848999.1| - 0.14 11.3 0.6 0.53 9.4 0.1 2.1 2 1 1 3 3 3 0 AF2226-like SPOUT RNA Methylase fused to THUMP Radical_SAM PF04055.16 gi|304313852|ref|YP_003848999.1| - 0.15 12.2 0.6 1.2 9.2 0.2 2.1 1 1 1 2 2 2 0 Radical SAM superfamily DUF1156 PF06634.7 gi|304313853|ref|YP_003849000.1| - 4.2e-23 80.8 1.7 9.6e-23 79.7 0.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|304313853|ref|YP_003849000.1| - 1e-11 44.8 1.8 4.9e-10 39.4 1.2 2.7 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|304313853|ref|YP_003849000.1| - 0.00014 21.3 0.1 0.25 10.7 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|304313853|ref|YP_003849000.1| - 0.00014 22.2 0.0 0.83 10.1 0.0 3.0 3 0 0 3 3 3 2 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|304313853|ref|YP_003849000.1| - 0.00019 20.9 0.0 0.02 14.4 0.0 2.3 2 0 0 2 2 2 1 DNA methylase UPF0020 PF01170.13 gi|304313853|ref|YP_003849000.1| - 0.0014 18.1 0.0 0.42 10.1 0.0 3.1 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|304313853|ref|YP_003849000.1| - 0.041 13.3 0.0 0.77 9.1 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase UPF0547 PF10571.4 gi|304313853|ref|YP_003849000.1| - 0.46 10.2 1.4 22 4.8 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 LysE PF01810.13 gi|304313854|ref|YP_003849001.1| - 1.3e-32 112.6 11.1 1.5e-32 112.4 7.7 1.1 1 0 0 1 1 1 1 LysE type translocator CD52 PF15116.1 gi|304313854|ref|YP_003849001.1| - 1.2 9.0 6.0 4.4 7.1 1.0 2.7 1 1 1 2 2 2 0 CAMPATH-1 antigen Cortex-I_coil PF09304.5 gi|304313855|ref|YP_003849002.1| - 0.058 13.4 0.0 0.058 13.4 0.0 1.0 1 0 0 1 1 1 0 Cortexillin I, coiled coil OCD_Mu_crystall PF02423.10 gi|304313856|ref|YP_003849003.1| - 2.1e-118 394.6 0.0 2.4e-118 394.4 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|304313856|ref|YP_003849003.1| - 0.001 19.1 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|304313856|ref|YP_003849003.1| - 0.038 13.0 0.0 0.066 12.2 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Amidase PF01425.16 gi|304313857|ref|YP_003849004.1| - 1.4e-128 429.5 0.0 1.6e-128 429.3 0.0 1.0 1 0 0 1 1 1 1 Amidase CbiA PF01656.18 gi|304313858|ref|YP_003849005.1| - 3.1e-18 65.8 0.4 7.8e-18 64.5 0.3 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|304313858|ref|YP_003849005.1| - 2.2e-16 59.8 0.0 3.8e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.1 gi|304313858|ref|YP_003849005.1| - 1.6e-12 47.4 0.8 1.9e-05 24.3 0.2 2.2 1 1 1 2 2 2 2 AAA domain GATase_5 PF13507.1 gi|304313858|ref|YP_003849005.1| - 6.7e-07 28.4 0.0 0.00037 19.4 0.0 2.8 2 1 0 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|304313858|ref|YP_003849005.1| - 0.00015 21.2 0.0 0.00033 20.1 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|304313858|ref|YP_003849005.1| - 0.0014 18.0 0.3 0.0024 17.3 0.2 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|304313858|ref|YP_003849005.1| - 0.012 15.2 0.1 0.074 12.6 0.0 2.0 1 1 1 2 2 2 0 SNO glutamine amidotransferase family MobB PF03205.9 gi|304313858|ref|YP_003849005.1| - 0.022 14.4 0.2 3.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4066 PF13278.1 gi|304313858|ref|YP_003849005.1| - 0.056 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative amidotransferase KaiC PF06745.8 gi|304313859|ref|YP_003849006.1| - 6.1e-65 218.5 0.2 6.9e-65 218.3 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|304313859|ref|YP_003849006.1| - 2.6e-08 33.5 0.0 1.1e-07 31.4 0.0 1.8 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|304313859|ref|YP_003849006.1| - 7.9e-06 25.4 0.0 3.9e-05 23.1 0.0 2.0 2 1 0 2 2 2 1 IstB-like ATP binding protein GvpD PF07088.6 gi|304313859|ref|YP_003849006.1| - 0.00036 18.9 0.0 0.00048 18.5 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|304313859|ref|YP_003849006.1| - 0.00079 18.3 0.0 0.00098 18.0 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|304313859|ref|YP_003849006.1| - 0.00087 18.4 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|304313859|ref|YP_003849006.1| - 0.0062 16.6 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|304313859|ref|YP_003849006.1| - 0.03 13.2 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|304313859|ref|YP_003849006.1| - 0.038 13.5 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|304313859|ref|YP_003849006.1| - 0.053 13.4 0.4 0.078 12.9 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|304313859|ref|YP_003849006.1| - 0.068 13.4 0.2 0.35 11.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain UPF0227 PF05728.7 gi|304313859|ref|YP_003849006.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) ATP-synt_ab PF00006.20 gi|304313859|ref|YP_003849006.1| - 0.092 12.2 0.0 0.12 11.8 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|304313859|ref|YP_003849006.1| - 0.11 12.1 0.1 0.22 11.2 0.1 1.6 1 1 0 1 1 1 0 NTPase AAA_5 PF07728.9 gi|304313859|ref|YP_003849006.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DHBP_synthase PF00926.14 gi|304313860|ref|YP_003849007.1| - 2.4e-72 242.2 0.2 2.7e-72 242.0 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|304313861|ref|YP_003849008.1| - 4.1e-34 116.7 0.0 5e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|304313861|ref|YP_003849008.1| - 0.004 16.8 0.2 0.38 10.5 0.0 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE tRNA-synt_2d PF01409.15 gi|304313862|ref|YP_003849009.1| - 1.2e-57 194.9 0.0 3.1e-55 187.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|304313862|ref|YP_003849009.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|304313862|ref|YP_003849009.1| - 0.059 12.1 0.1 4.3 6.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) FAD_binding_2 PF00890.19 gi|304313864|ref|YP_003849011.1| - 1.1e-103 347.3 2.0 1.6e-103 346.8 1.4 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|304313864|ref|YP_003849011.1| - 2.8e-25 88.6 0.1 5.2e-25 87.7 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|304313864|ref|YP_003849011.1| - 3.1e-09 37.0 0.3 0.0013 18.6 0.0 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|304313864|ref|YP_003849011.1| - 6.4e-05 22.0 0.0 0.00016 20.7 0.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|304313864|ref|YP_003849011.1| - 0.0028 16.7 2.6 0.038 13.0 0.1 3.0 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|304313864|ref|YP_003849011.1| - 0.044 12.2 3.2 0.55 8.6 0.2 2.9 3 0 0 3 3 3 0 HI0933-like protein GIDA PF01134.17 gi|304313864|ref|YP_003849011.1| - 0.61 8.8 6.9 0.5 9.1 0.5 2.9 3 0 0 3 3 3 0 Glucose inhibited division protein A HAD_2 PF13419.1 gi|304313865|ref|YP_003849012.1| - 1.5e-10 41.5 0.1 2.6e-10 40.8 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|304313865|ref|YP_003849012.1| - 0.0001 22.8 0.0 0.00077 19.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|304313865|ref|YP_003849012.1| - 0.00032 20.3 0.2 0.0011 18.5 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|304313865|ref|YP_003849012.1| - 0.023 14.8 0.5 0.039 14.1 0.4 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase STAG PF08514.6 gi|304313865|ref|YP_003849012.1| - 0.034 13.8 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 STAG domain Amidohydro_1 PF01979.15 gi|304313866|ref|YP_003849013.1| - 9.2e-67 226.0 1.7 1.1e-66 225.7 1.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|304313866|ref|YP_003849013.1| - 1.1e-16 61.7 1.1 2.2e-16 60.7 0.8 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|304313866|ref|YP_003849013.1| - 1.6e-13 50.2 1.0 8.4e-13 47.9 0.0 2.7 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304313866|ref|YP_003849013.1| - 1.8e-13 50.5 2.5 2.2e-11 43.6 0.1 2.9 2 1 1 3 3 3 2 Amidohydrolase family A_deaminase PF00962.17 gi|304313866|ref|YP_003849013.1| - 0.00022 20.2 0.0 0.00041 19.3 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.16 gi|304313866|ref|YP_003849013.1| - 0.002 17.3 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase SCRG1 PF15224.1 gi|304313866|ref|YP_003849013.1| - 0.15 11.8 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 Scrapie-responsive protein 1 HisG PF01634.13 gi|304313867|ref|YP_003849014.1| - 4.4e-55 185.6 0.0 6.9e-55 185.0 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|304313867|ref|YP_003849014.1| - 2.2e-27 94.8 0.2 4.3e-27 93.8 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain LysR_substrate PF03466.15 gi|304313867|ref|YP_003849014.1| - 0.0074 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain DUF881 PF05949.7 gi|304313867|ref|YP_003849014.1| - 0.039 13.4 0.1 0.073 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) FAA_hydrolase PF01557.13 gi|304313868|ref|YP_003849015.1| - 7.1e-70 234.8 0.1 8.8e-70 234.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|304313868|ref|YP_003849015.1| - 0.048 14.0 0.0 0.15 12.5 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2437) tRNA-synt_1 PF00133.17 gi|304313869|ref|YP_003849016.1| - 2.4e-65 220.6 0.0 7.6e-55 186.0 0.0 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|304313869|ref|YP_003849016.1| - 6.1e-25 87.7 0.7 2e-10 39.8 0.1 3.6 2 2 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|304313869|ref|YP_003849016.1| - 3.4e-24 85.3 0.1 6.7e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|304313869|ref|YP_003849016.1| - 9.7e-10 38.0 0.0 2.9e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|304313869|ref|YP_003849016.1| - 7.3e-09 35.1 0.0 0.00054 19.1 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|304313869|ref|YP_003849016.1| - 0.00024 20.0 0.0 0.0094 14.8 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|304313869|ref|YP_003849016.1| - 0.00026 19.7 0.0 0.0061 15.2 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1b PF00579.20 gi|304313869|ref|YP_003849016.1| - 0.2 10.7 0.0 0.61 9.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) CutA1 PF03091.10 gi|304313870|ref|YP_003849017.1| - 1.2e-38 130.9 0.1 1.3e-38 130.7 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DEAD PF00270.24 gi|304313870|ref|YP_003849017.1| - 0.0016 17.9 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 DEAD/DEAH box helicase ATP-synt_F PF01990.12 gi|304313870|ref|YP_003849017.1| - 0.11 12.9 0.4 0.58 10.5 0.1 1.9 1 1 1 2 2 2 0 ATP synthase (F/14-kDa) subunit NAD_synthase PF02540.12 gi|304313871|ref|YP_003849018.1| - 1.6e-91 305.5 0.0 1.8e-91 305.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|304313871|ref|YP_003849018.1| - 2.7e-08 32.7 0.0 2.7e-05 22.9 0.0 2.4 3 0 0 3 3 3 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|304313871|ref|YP_003849018.1| - 3.7e-06 26.6 0.0 5.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|304313871|ref|YP_003849018.1| - 0.0056 15.9 0.0 0.016 14.4 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC IF2_N PF04760.10 gi|304313871|ref|YP_003849018.1| - 0.0086 15.7 1.8 2.7 7.7 0.0 3.0 3 0 0 3 3 3 2 Translation initiation factor IF-2, N-terminal region Sigma70_r4 PF04545.11 gi|304313871|ref|YP_003849018.1| - 0.022 14.0 0.1 0.82 9.0 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 GST_N_3 PF13417.1 gi|304313871|ref|YP_003849018.1| - 0.08 13.1 0.0 19 5.5 0.0 2.7 3 0 0 3 3 3 0 Glutathione S-transferase, N-terminal domain Sigma70_r4_2 PF08281.7 gi|304313871|ref|YP_003849018.1| - 0.15 11.4 0.1 14 5.2 0.0 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|304313871|ref|YP_003849018.1| - 0.4 10.6 1.6 0.83 9.5 0.0 2.3 3 0 0 3 3 3 0 Sigma-70 region 3 ArsA_ATPase PF02374.10 gi|304313872|ref|YP_003849019.1| - 3.2e-125 417.2 0.4 3.6e-125 417.0 0.3 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|304313872|ref|YP_003849019.1| - 5e-16 58.6 0.0 1.4e-15 57.2 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|304313872|ref|YP_003849019.1| - 4.3e-09 36.4 0.0 2e-08 34.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|304313872|ref|YP_003849019.1| - 4e-06 26.2 0.9 8.5e-05 21.8 0.0 2.5 3 0 0 3 3 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|304313872|ref|YP_003849019.1| - 1e-05 25.0 0.4 0.0093 15.4 0.3 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|304313872|ref|YP_003849019.1| - 0.0005 19.3 0.0 0.0011 18.2 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.1 gi|304313872|ref|YP_003849019.1| - 0.002 17.5 4.3 0.002 17.5 0.9 2.5 2 1 1 3 3 3 1 AAA domain ArgK PF03308.11 gi|304313872|ref|YP_003849019.1| - 0.0032 16.2 0.1 0.0073 15.1 0.1 1.5 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|304313872|ref|YP_003849019.1| - 0.0046 16.4 0.4 0.0079 15.6 0.3 1.5 1 1 0 1 1 1 1 AAA-like domain YhjQ PF06564.7 gi|304313872|ref|YP_003849019.1| - 0.0053 16.1 0.0 0.042 13.2 0.0 2.1 3 0 0 3 3 3 1 YhjQ protein NB-ARC PF00931.17 gi|304313872|ref|YP_003849019.1| - 0.0058 15.5 0.3 0.011 14.6 0.2 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_13 PF13166.1 gi|304313872|ref|YP_003849019.1| - 0.0098 14.4 0.1 0.0098 14.4 0.1 2.0 2 0 0 2 2 2 1 AAA domain ParA PF10609.4 gi|304313872|ref|YP_003849019.1| - 0.011 15.6 0.2 0.06 13.2 0.0 2.1 2 0 0 2 2 2 0 ParA/MinD ATPase like Zeta_toxin PF06414.7 gi|304313872|ref|YP_003849019.1| - 0.011 14.8 0.4 0.064 12.3 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin Tir_receptor_N PF07490.6 gi|304313872|ref|YP_003849019.1| - 0.042 13.4 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus AAA_16 PF13191.1 gi|304313872|ref|YP_003849019.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain MipZ PF09140.6 gi|304313872|ref|YP_003849019.1| - 0.05 12.6 0.3 0.3 10.1 0.1 2.1 1 1 1 2 2 2 0 ATPase MipZ AAA_30 PF13604.1 gi|304313872|ref|YP_003849019.1| - 0.052 13.1 0.1 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|304313872|ref|YP_003849019.1| - 0.064 12.9 0.8 3 7.5 0.3 2.4 2 0 0 2 2 2 0 NTPase SecA_DEAD PF07517.9 gi|304313872|ref|YP_003849019.1| - 0.074 12.3 0.4 0.43 9.8 0.0 1.8 1 1 0 2 2 2 0 SecA DEAD-like domain AAA_26 PF13500.1 gi|304313872|ref|YP_003849019.1| - 0.092 12.3 0.1 11 5.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|304313872|ref|YP_003849019.1| - 0.3 10.6 2.1 1.2 8.7 1.5 2.0 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|304313872|ref|YP_003849019.1| - 0.31 10.5 0.1 0.31 10.5 0.1 2.5 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|304313872|ref|YP_003849019.1| - 3.6 7.9 4.8 3.2 8.0 1.1 2.6 2 2 0 2 2 2 0 AAA domain HMD PF03201.11 gi|304313873|ref|YP_003849020.1| - 1.4e-39 133.9 3.3 2.5e-39 133.1 2.3 1.4 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.10 gi|304313873|ref|YP_003849020.1| - 5.4e-05 23.0 0.3 0.00018 21.3 0.0 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|304313873|ref|YP_003849020.1| - 0.00032 21.0 0.1 0.0029 18.0 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|304313873|ref|YP_003849020.1| - 0.023 14.3 1.4 0.35 10.4 0.1 2.9 2 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_12 PF08461.5 gi|304313873|ref|YP_003849020.1| - 0.027 14.1 0.1 0.075 12.7 0.0 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain IlvN PF07991.7 gi|304313873|ref|YP_003849020.1| - 0.044 13.1 0.0 0.087 12.1 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain SBBP PF06739.6 gi|304313874|ref|YP_003849021.1| - 3.3e-42 141.9 57.4 2.3e-09 36.8 2.4 8.8 8 0 0 8 8 8 7 Beta-propeller repeat CARDB PF07705.6 gi|304313874|ref|YP_003849021.1| - 2.7e-33 114.0 41.3 1.5e-06 28.2 0.2 10.7 8 1 2 10 10 10 10 CARDB Glyco_hydro_2 PF00703.16 gi|304313874|ref|YP_003849021.1| - 0.00038 20.8 0.5 3.8 7.9 0.0 4.7 4 0 0 4 4 4 1 Glycosyl hydrolases family 2 Reg_prop PF07494.6 gi|304313874|ref|YP_003849021.1| - 0.004 16.9 4.7 25 5.3 0.2 5.9 6 0 0 6 6 6 0 Two component regulator propeller NHL PF01436.16 gi|304313874|ref|YP_003849021.1| - 0.0096 15.8 5.0 0.48 10.4 0.0 4.7 4 0 0 4 4 4 1 NHL repeat DUF4140 PF13600.1 gi|304313874|ref|YP_003849021.1| - 0.11 12.9 9.5 14 6.1 0.0 6.5 6 2 1 7 7 7 0 N-terminal domain of unknown function (DUF4140) FliD_N PF02465.13 gi|304313874|ref|YP_003849021.1| - 1.2 9.5 7.0 14 6.0 0.0 4.6 5 1 0 5 5 5 0 Flagellar hook-associated protein 2 N-terminus TP_methylase PF00590.15 gi|304313875|ref|YP_003849022.1| - 2.2e-43 148.3 0.1 2.5e-43 148.2 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MMR_HSR1_C PF08438.5 gi|304313876|ref|YP_003849023.1| - 1.4e-38 131.4 0.0 2.7e-38 130.5 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|304313876|ref|YP_003849023.1| - 1.4e-18 66.9 0.0 1e-17 64.1 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|304313876|ref|YP_003849023.1| - 8.1e-14 51.2 0.0 1.7e-13 50.1 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|304313876|ref|YP_003849023.1| - 7.2e-08 31.8 0.0 3.8e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B LexA_DNA_bind PF01726.11 gi|304313876|ref|YP_003849023.1| - 0.15 11.6 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain E1-E2_ATPase PF00122.15 gi|304313877|ref|YP_003849024.1| - 1.1e-69 234.0 7.2 1.4e-69 233.6 2.9 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|304313877|ref|YP_003849024.1| - 9.8e-46 155.5 3.2 9.8e-46 155.5 2.2 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|304313877|ref|YP_003849024.1| - 2.2e-36 126.2 0.0 7.2e-36 124.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|304313877|ref|YP_003849024.1| - 9.5e-22 76.7 0.0 1.9e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|304313877|ref|YP_003849024.1| - 6.9e-19 67.0 0.0 1.6e-18 65.9 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|304313877|ref|YP_003849024.1| - 7.3e-16 58.8 0.0 1.9e-15 57.5 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304313877|ref|YP_003849024.1| - 2.2e-07 30.6 2.6 1.2e-06 28.2 1.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|304313877|ref|YP_003849024.1| - 0.023 14.9 0.3 0.059 13.5 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ATG27 PF09451.5 gi|304313878|ref|YP_003849025.1| - 0.0012 18.1 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Autophagy-related protein 27 BPD_transp_1 PF00528.17 gi|304313878|ref|YP_003849025.1| - 0.0045 16.5 0.0 0.0051 16.3 0.0 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF202 PF02656.10 gi|304313878|ref|YP_003849025.1| - 0.016 15.4 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) ASFV_J13L PF05568.6 gi|304313878|ref|YP_003849025.1| - 0.037 13.5 0.8 0.068 12.7 0.6 1.4 1 0 0 1 1 1 0 African swine fever virus J13L protein DUF1469 PF07332.6 gi|304313878|ref|YP_003849025.1| - 0.048 13.3 0.2 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF912 PF06024.7 gi|304313878|ref|YP_003849025.1| - 0.056 13.4 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ABC2_membrane_2 PF12679.2 gi|304313878|ref|YP_003849025.1| - 0.062 12.1 0.5 0.15 10.9 0.4 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4307 PF14155.1 gi|304313878|ref|YP_003849025.1| - 0.097 12.4 0.1 6 6.6 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF347 PF03988.7 gi|304313878|ref|YP_003849025.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) DUF805 PF05656.9 gi|304313878|ref|YP_003849025.1| - 0.47 10.2 2.6 2.2 8.1 1.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF4051 PF13260.1 gi|304313878|ref|YP_003849025.1| - 5 6.5 6.3 1.3 8.4 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) TrkA_N PF02254.13 gi|304313879|ref|YP_003849026.1| - 1.5e-20 73.3 0.2 3.7e-20 72.0 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|304313879|ref|YP_003849026.1| - 1.2e-15 56.9 11.1 1.9e-15 56.2 7.7 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.16 gi|304313879|ref|YP_003849026.1| - 3.3e-14 52.2 0.6 1e-13 50.6 0.4 1.9 1 0 0 1 1 1 1 TrkA-C domain Ion_trans PF00520.26 gi|304313879|ref|YP_003849026.1| - 0.016 14.4 2.8 0.024 13.8 1.9 1.3 1 0 0 1 1 1 0 Ion transport protein DUF2111 PF09884.4 gi|304313879|ref|YP_003849026.1| - 0.032 14.0 0.3 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2111) SfsA PF03749.8 gi|304313880|ref|YP_003849027.1| - 3e-70 236.0 0.0 3.4e-70 235.8 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Oxidored_nitro PF00148.14 gi|304313881|ref|YP_003849028.1| - 1.4e-22 79.9 0.1 2.2e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peptidase_S66 PF02016.10 gi|304313881|ref|YP_003849028.1| - 0.071 12.0 0.0 0.096 11.6 0.0 1.2 1 0 0 1 1 1 0 LD-carboxypeptidase NTP_transferase PF00483.18 gi|304313882|ref|YP_003849029.1| - 7.5e-28 97.4 0.0 1.4e-27 96.6 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.13 gi|304313882|ref|YP_003849029.1| - 4.1e-09 36.2 0.7 5.9e-09 35.7 0.2 1.5 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase NTP_transf_3 PF12804.2 gi|304313882|ref|YP_003849029.1| - 8.7e-09 35.6 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cupin_2 PF07883.6 gi|304313882|ref|YP_003849029.1| - 2.4e-07 30.1 0.3 6.1e-07 28.8 0.1 1.7 2 0 0 2 2 2 1 Cupin domain Ectoine_synth PF06339.7 gi|304313882|ref|YP_003849029.1| - 0.00011 22.1 0.5 0.00017 21.4 0.4 1.2 1 0 0 1 1 1 1 Ectoine synthase Sigma_reg_C PF13791.1 gi|304313882|ref|YP_003849029.1| - 0.00043 20.3 1.8 0.00068 19.7 1.3 1.3 1 0 0 1 1 1 1 Sigma factor regulator C-terminal AraC_binding PF02311.14 gi|304313882|ref|YP_003849029.1| - 0.0087 15.7 0.1 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|304313882|ref|YP_003849029.1| - 0.057 12.8 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Cupin GATase PF00117.23 gi|304313883|ref|YP_003849030.1| - 5.2e-37 127.1 0.0 6.2e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|304313883|ref|YP_003849030.1| - 2.2e-07 30.6 0.0 5.3e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|304313883|ref|YP_003849030.1| - 1.9e-06 27.5 0.0 3.1e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|304313883|ref|YP_003849030.1| - 6.6e-05 22.4 0.1 0.073 12.4 0.0 2.1 2 0 0 2 2 2 2 Peptidase C26 AIRS_C PF02769.17 gi|304313884|ref|YP_003849031.1| - 1.3e-18 67.4 1.2 2.6e-18 66.4 0.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|304313884|ref|YP_003849031.1| - 8.9e-11 41.8 0.3 2.4e-10 40.5 0.2 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AMP-binding PF00501.23 gi|304313886|ref|YP_003849033.1| - 1.2e-21 76.6 0.0 2.8e-21 75.3 0.0 1.4 1 1 1 2 2 2 1 AMP-binding enzyme SIS_2 PF13580.1 gi|304313886|ref|YP_003849033.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 SIS domain TruD PF01142.13 gi|304313887|ref|YP_003849034.1| - 1.5e-119 399.0 0.0 1.7e-119 398.8 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF126 PF01989.11 gi|304313888|ref|YP_003849035.1| - 8.8e-39 131.0 0.7 1.4e-38 130.4 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 Romo1 PF10247.4 gi|304313889|ref|YP_003849036.1| - 4.7 7.4 6.5 1.4 9.1 2.1 1.9 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Amidohydro_1 PF01979.15 gi|304313891|ref|YP_003849038.1| - 2.3e-36 126.1 0.3 2.9e-36 125.7 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|304313891|ref|YP_003849038.1| - 2.5e-14 52.8 0.7 1.1e-13 50.7 0.0 2.4 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|304313891|ref|YP_003849038.1| - 5.5e-08 33.1 0.2 1e-07 32.3 0.1 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304313891|ref|YP_003849038.1| - 0.00037 19.8 0.7 0.2 10.8 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family DUF769 PF05590.6 gi|304313891|ref|YP_003849038.1| - 0.088 12.0 1.2 2.7 7.1 0.8 2.3 1 1 0 1 1 1 0 Xylella fastidiosa protein of unknown function (DUF769) Amidohydro_1 PF01979.15 gi|304313892|ref|YP_003849039.1| - 2.3e-10 40.6 0.0 2.6e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|304313892|ref|YP_003849039.1| - 2.2e-07 31.2 0.0 2.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304313892|ref|YP_003849039.1| - 0.00033 20.0 0.0 0.00036 19.8 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family E1-E2_ATPase PF00122.15 gi|304313893|ref|YP_003849040.1| - 1.4e-62 210.7 3.8 2.2e-61 206.8 0.0 2.4 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|304313893|ref|YP_003849040.1| - 3.5e-48 164.8 1.8 3.5e-48 164.8 1.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|304313893|ref|YP_003849040.1| - 2.2e-33 114.1 0.2 5.4e-16 58.4 0.0 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|304313893|ref|YP_003849040.1| - 2.7e-17 63.5 0.0 6e-17 62.4 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304313893|ref|YP_003849040.1| - 0.0004 20.0 0.6 0.0086 15.6 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Spore_YhcN_YlaJ PF09580.5 gi|304313893|ref|YP_003849040.1| - 0.0062 16.6 0.4 0.15 12.1 0.0 2.6 3 0 0 3 3 3 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Hydrolase_6 PF13344.1 gi|304313893|ref|YP_003849040.1| - 0.019 14.8 0.0 0.073 12.9 0.0 2.0 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PCP_red PF08369.5 gi|304313893|ref|YP_003849040.1| - 0.14 12.0 0.3 0.4 10.5 0.2 1.8 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit PolC_DP2 PF03833.8 gi|304313894|ref|YP_003849041.1| - 0 1318.3 0.3 0 1316.5 0.2 1.7 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.1 gi|304313894|ref|YP_003849041.1| - 3.9 6.8 5.2 6.6 6.0 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|304313894|ref|YP_003849041.1| - 7 6.4 9.7 5.1 6.8 0.7 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|304313894|ref|YP_003849041.1| - 8.5 6.0 9.9 4.6 6.9 0.7 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Sec61_beta PF03911.11 gi|304313895|ref|YP_003849042.1| - 7e-16 57.7 0.0 7.7e-16 57.6 0.0 1.0 1 0 0 1 1 1 1 Sec61beta family Lyase_1 PF00206.15 gi|304313896|ref|YP_003849043.1| - 1.9e-54 184.9 0.1 2.6e-54 184.5 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|304313896|ref|YP_003849043.1| - 1.5e-25 88.9 0.5 5.7e-25 87.1 0.2 2.2 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.4 gi|304313896|ref|YP_003849043.1| - 2.1e-05 24.5 0.6 0.0012 18.8 0.0 2.8 2 0 0 2 2 2 1 Fumarase C C-terminus ASL_C2 PF14698.1 gi|304313896|ref|YP_003849043.1| - 0.0064 16.5 0.1 0.031 14.3 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Terminase_2 PF03592.11 gi|304313896|ref|YP_003849043.1| - 0.11 12.7 0.2 1.5 9.1 0.0 2.4 2 0 0 2 2 2 0 Terminase small subunit NRDD PF13597.1 gi|304313898|ref|YP_003849045.1| - 1.2e-146 488.9 0.0 1.7e-146 488.5 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|304313898|ref|YP_003849045.1| - 9.1e-16 58.0 2.2 3.7e-07 30.4 0.4 2.8 1 1 1 2 2 2 2 ATP cone domain HTH_29 PF13551.1 gi|304313899|ref|YP_003849046.1| - 1.2e-19 70.5 0.0 3.1e-19 69.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|304313899|ref|YP_003849046.1| - 1.5e-15 57.7 0.1 1.5e-15 57.7 0.1 2.0 3 0 0 3 3 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|304313899|ref|YP_003849046.1| - 7.4e-12 44.6 0.3 3.4e-11 42.5 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|304313899|ref|YP_003849046.1| - 8.8e-10 37.9 1.7 3.8e-09 35.8 0.1 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|304313899|ref|YP_003849046.1| - 4.6e-09 36.1 0.2 1.8e-08 34.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|304313899|ref|YP_003849046.1| - 8e-05 22.8 0.8 0.00079 19.6 0.0 3.0 3 1 0 3 3 3 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|304313899|ref|YP_003849046.1| - 0.00061 20.0 0.0 0.0012 19.1 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_IS630 PF01710.11 gi|304313899|ref|YP_003849046.1| - 0.0044 16.6 1.8 0.0062 16.2 0.4 1.8 1 1 0 1 1 1 1 Transposase DUF746 PF05344.6 gi|304313899|ref|YP_003849046.1| - 0.0072 15.8 0.0 0.022 14.3 0.0 1.8 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) HTH_21 PF13276.1 gi|304313899|ref|YP_003849046.1| - 0.018 15.0 0.4 0.15 12.1 0.0 2.3 2 0 0 2 2 2 0 HTH-like domain Tox-GHH PF15636.1 gi|304313899|ref|YP_003849046.1| - 0.02 14.5 1.3 0.041 13.5 0.2 2.0 2 0 0 2 2 2 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin Ribosomal_S24e PF01282.14 gi|304313899|ref|YP_003849046.1| - 0.033 13.9 1.7 0.31 10.8 0.0 2.9 3 1 0 3 3 3 0 Ribosomal protein S24e HTH_20 PF12840.2 gi|304313899|ref|YP_003849046.1| - 0.037 13.8 0.0 0.73 9.6 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain Enkurin PF13864.1 gi|304313899|ref|YP_003849046.1| - 0.06 13.5 4.3 5 7.4 0.0 2.7 3 0 0 3 3 3 0 Calmodulin-binding P16-Arc PF04699.9 gi|304313899|ref|YP_003849046.1| - 0.067 13.2 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 ARP2/3 complex 16 kDa subunit (p16-Arc) Integrase_1 PF12835.2 gi|304313899|ref|YP_003849046.1| - 0.078 12.7 0.3 0.094 12.4 0.2 1.2 1 0 0 1 1 1 0 Integrase HTH_7 PF02796.10 gi|304313899|ref|YP_003849046.1| - 0.079 12.8 0.1 1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MS_channel PF00924.13 gi|304313899|ref|YP_003849046.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel HTH_38 PF13936.1 gi|304313899|ref|YP_003849046.1| - 0.11 12.0 1.5 5.9 6.5 0.1 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain GAD PF02938.9 gi|304313899|ref|YP_003849046.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 GAD domain DUF1128 PF06569.6 gi|304313899|ref|YP_003849046.1| - 0.14 11.8 1.1 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) Gp-FAR-1 PF05823.7 gi|304313899|ref|YP_003849046.1| - 0.36 10.7 0.0 0.36 10.7 0.0 2.2 3 0 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DDE_3 PF13358.1 gi|304313900|ref|YP_003849047.1| - 2.1e-23 82.6 0.1 3.7e-23 81.9 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease rve PF00665.21 gi|304313900|ref|YP_003849047.1| - 5.5e-07 29.7 0.0 9.4e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|304313900|ref|YP_003849047.1| - 7e-07 28.6 0.1 9.5e-07 28.1 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease Phytoreo_P8 PF07124.6 gi|304313900|ref|YP_003849047.1| - 0.074 11.6 0.1 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Phytoreovirus outer capsid protein P8 Lipase_GDSL_3 PF14606.1 gi|304313900|ref|YP_003849047.1| - 0.16 11.6 0.4 0.6 9.8 0.1 2.0 2 1 1 3 3 3 0 GDSL-like Lipase/Acylhydrolase family tRNA-synt_1f PF01921.13 gi|304313903|ref|YP_003849050.1| - 1.4e-131 438.4 0.0 2.3e-131 437.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|304313903|ref|YP_003849050.1| - 8.3e-05 21.4 0.0 0.00035 19.3 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (M) ThiC PF01964.13 gi|304313904|ref|YP_003849051.1| - 5.5e-188 624.7 0.5 6.2e-188 624.5 0.3 1.0 1 0 0 1 1 1 1 ThiC family Fer4_7 PF12838.2 gi|304313904|ref|YP_003849051.1| - 0.28 11.5 2.6 0.72 10.2 1.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain PfkB PF00294.19 gi|304313905|ref|YP_003849052.1| - 3.6e-60 203.6 0.0 4.1e-60 203.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_1 PF00126.22 gi|304313906|ref|YP_003849053.1| - 2.6e-09 36.6 0.2 4.9e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|304313906|ref|YP_003849053.1| - 0.00018 21.0 0.0 0.00051 19.5 0.0 1.7 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Dirigent PF03018.9 gi|304313906|ref|YP_003849053.1| - 0.041 13.3 0.1 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Dirigent-like protein HTH_8 PF02954.14 gi|304313906|ref|YP_003849053.1| - 0.053 13.0 0.1 0.098 12.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family SIS PF01380.17 gi|304313907|ref|YP_003849054.1| - 7.9e-17 61.0 0.1 1.1e-16 60.6 0.1 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|304313907|ref|YP_003849054.1| - 1e-13 51.2 1.0 1.6e-08 34.3 0.2 2.3 1 1 1 2 2 2 2 SIS domain DUF531 PF04407.7 gi|304313907|ref|YP_003849054.1| - 0.025 14.4 0.0 0.053 13.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF531) AlaDh_PNT_C PF01262.16 gi|304313907|ref|YP_003849054.1| - 0.033 13.7 2.1 3 7.3 0.1 2.3 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FdhD-NarQ PF02634.10 gi|304313908|ref|YP_003849055.1| - 2.7e-62 210.3 0.0 3.1e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family BolA PF01722.13 gi|304313908|ref|YP_003849055.1| - 0.06 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 BolA-like protein 2Fe-2S_thioredx PF01257.14 gi|304313909|ref|YP_003849056.1| - 4e-48 162.7 0.0 4.7e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_51K PF01512.12 gi|304313910|ref|YP_003849057.1| - 2.4e-49 166.9 0.0 4.2e-49 166.1 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|304313910|ref|YP_003849057.1| - 1.1e-18 66.0 0.2 1.1e-18 66.0 0.1 3.7 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.22 gi|304313910|ref|YP_003849057.1| - 2.1e-09 36.5 16.0 1.6e-05 24.3 2.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain SLBB PF10531.4 gi|304313910|ref|YP_003849057.1| - 5.2e-09 35.8 0.2 9.9e-09 34.9 0.2 1.5 1 0 0 1 1 1 1 SLBB domain Fer4_7 PF12838.2 gi|304313910|ref|YP_003849057.1| - 1.8e-07 31.4 11.1 1.8e-07 31.4 7.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304313910|ref|YP_003849057.1| - 2e-07 30.7 10.2 2e-07 30.7 7.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304313910|ref|YP_003849057.1| - 1.9e-06 28.0 10.5 1.9e-06 28.0 7.3 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304313910|ref|YP_003849057.1| - 2.4e-05 24.0 9.5 0.00075 19.2 0.6 4.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304313910|ref|YP_003849057.1| - 4.2e-05 23.2 3.6 4.2e-05 23.2 2.5 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304313910|ref|YP_003849057.1| - 5.7e-05 22.8 16.9 0.015 15.1 0.7 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304313910|ref|YP_003849057.1| - 0.0054 17.4 14.6 0.0069 17.1 1.4 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304313910|ref|YP_003849057.1| - 0.64 10.0 19.8 0.07 13.1 8.5 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304313910|ref|YP_003849057.1| - 5.3 7.5 14.3 9.5 6.7 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|304313911|ref|YP_003849058.1| - 7e-31 107.6 0.4 1.2e-30 106.8 0.3 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|304313911|ref|YP_003849058.1| - 6.2e-29 100.2 0.4 1e-28 99.5 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|304313911|ref|YP_003849058.1| - 1.6e-10 41.2 0.0 2.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304313911|ref|YP_003849058.1| - 6.6e-08 32.5 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2042 PF09743.4 gi|304313911|ref|YP_003849058.1| - 0.08 12.2 0.2 0.29 10.4 0.0 1.9 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2042) A2L_zn_ribbon PF08792.5 gi|304313911|ref|YP_003849058.1| - 0.24 10.8 2.4 1 8.8 0.5 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain MobB PF03205.9 gi|304313912|ref|YP_003849059.1| - 2e-35 121.5 0.1 2.9e-35 121.0 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.8 gi|304313912|ref|YP_003849059.1| - 9.7e-16 57.0 2.4 1.7e-15 56.2 1.7 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster NTPase_1 PF03266.10 gi|304313912|ref|YP_003849059.1| - 0.002 17.8 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_14 PF13173.1 gi|304313912|ref|YP_003849059.1| - 0.0073 16.2 0.0 0.015 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|304313912|ref|YP_003849059.1| - 0.0088 14.8 0.1 0.013 14.2 0.1 1.2 1 0 0 1 1 1 1 ArgK protein APS_kinase PF01583.15 gi|304313912|ref|YP_003849059.1| - 0.0089 15.7 0.1 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase LpxK PF02606.9 gi|304313912|ref|YP_003849059.1| - 0.01 14.7 0.1 0.013 14.4 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.1 gi|304313912|ref|YP_003849059.1| - 0.056 13.4 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|304313912|ref|YP_003849059.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase Miro PF08477.8 gi|304313912|ref|YP_003849059.1| - 0.066 13.7 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|304313912|ref|YP_003849059.1| - 0.093 12.3 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Molybdopterin PF00384.17 gi|304313913|ref|YP_003849060.1| - 6.6e-87 292.0 0.0 8.2e-87 291.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|304313913|ref|YP_003849060.1| - 3.3e-33 113.7 0.0 6.5e-33 112.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|304313913|ref|YP_003849060.1| - 1.2e-19 69.8 1.1 3.5e-19 68.3 0.8 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|304313913|ref|YP_003849060.1| - 2.1e-18 65.8 0.2 8.3e-18 63.9 0.1 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|304313913|ref|YP_003849060.1| - 4.9e-12 44.8 0.1 4.9e-12 44.8 0.1 2.6 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.22 gi|304313913|ref|YP_003849060.1| - 1.6e-09 36.9 19.6 1.6e-06 27.4 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304313913|ref|YP_003849060.1| - 5.3e-08 32.7 5.3 5.3e-08 32.7 3.6 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|304313913|ref|YP_003849060.1| - 6e-08 32.3 0.4 6e-08 32.3 0.3 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.2 gi|304313913|ref|YP_003849060.1| - 6e-08 32.9 7.0 6e-08 32.9 4.8 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304313913|ref|YP_003849060.1| - 2.3e-07 30.9 7.4 2.3e-07 30.9 5.1 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304313913|ref|YP_003849060.1| - 4.2e-07 29.7 5.7 4.2e-07 29.7 3.9 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304313913|ref|YP_003849060.1| - 1.1e-05 25.0 12.7 6.4e-05 22.6 1.6 3.7 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304313913|ref|YP_003849060.1| - 1.5e-05 25.6 7.2 0.0021 18.7 1.9 2.9 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|304313913|ref|YP_003849060.1| - 3e-05 23.7 11.2 3e-05 23.7 7.8 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304313913|ref|YP_003849060.1| - 6.9e-05 23.1 9.4 0.00096 19.5 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304313913|ref|YP_003849060.1| - 0.0012 18.6 23.7 0.0039 17.0 1.5 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain FeoA PF04023.9 gi|304313913|ref|YP_003849060.1| - 0.058 13.3 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 FeoA domain Fer4_17 PF13534.1 gi|304313913|ref|YP_003849060.1| - 0.099 13.0 16.3 0.096 13.0 7.1 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304313913|ref|YP_003849060.1| - 0.54 10.6 11.2 5 7.5 2.0 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|304313913|ref|YP_003849060.1| - 1.3 9.6 14.8 5.2 7.7 1.9 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304313914|ref|YP_003849061.1| - 3.1e-10 39.1 17.0 8.9e-06 25.0 4.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304313914|ref|YP_003849061.1| - 2.4e-08 34.0 22.6 1.6e-06 28.2 8.3 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304313914|ref|YP_003849061.1| - 3.7e-08 33.6 24.4 1e-07 32.2 8.0 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304313914|ref|YP_003849061.1| - 4.1e-08 32.9 24.6 3.9e-07 29.8 9.5 2.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain HTH_3 PF01381.17 gi|304313914|ref|YP_003849061.1| - 8.3e-07 28.7 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|304313914|ref|YP_003849061.1| - 1.3e-06 27.8 0.1 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|304313914|ref|YP_003849061.1| - 4.2e-06 26.2 0.1 1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_16 PF13484.1 gi|304313914|ref|YP_003849061.1| - 6.4e-06 26.8 12.7 0.017 15.8 0.6 2.7 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304313914|ref|YP_003849061.1| - 9.6e-06 25.2 21.1 0.0019 17.9 3.8 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain HTH_28 PF13518.1 gi|304313914|ref|YP_003849061.1| - 4.2e-05 23.4 0.1 7.9e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_10 PF13237.1 gi|304313914|ref|YP_003849061.1| - 6.3e-05 22.6 16.7 0.0011 18.7 2.1 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain NUMOD1 PF07453.8 gi|304313914|ref|YP_003849061.1| - 6.5e-05 22.6 0.1 0.00012 21.7 0.1 1.4 1 0 0 1 1 1 1 NUMOD1 domain Fer4_8 PF13183.1 gi|304313914|ref|YP_003849061.1| - 9.1e-05 22.4 9.7 0.014 15.3 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304313914|ref|YP_003849061.1| - 0.00011 22.4 18.1 0.033 14.6 3.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304313914|ref|YP_003849061.1| - 0.00023 21.4 10.6 0.01 16.1 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain HTH_19 PF12844.2 gi|304313914|ref|YP_003849061.1| - 0.00023 21.1 0.1 0.00048 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|304313914|ref|YP_003849061.1| - 0.00027 20.2 0.1 0.00055 19.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fer4_6 PF12837.2 gi|304313914|ref|YP_003849061.1| - 0.00038 20.2 15.6 0.00094 18.9 1.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain HTH_7 PF02796.10 gi|304313914|ref|YP_003849061.1| - 0.00057 19.6 0.1 0.00095 18.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Fer4_4 PF12800.2 gi|304313914|ref|YP_003849061.1| - 0.00066 19.8 21.0 0.012 15.8 2.7 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain HTH_5 PF01022.15 gi|304313914|ref|YP_003849061.1| - 0.00077 19.0 0.1 0.0017 17.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_37 PF13744.1 gi|304313914|ref|YP_003849061.1| - 0.00081 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|304313914|ref|YP_003849061.1| - 0.00082 19.5 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|304313914|ref|YP_003849061.1| - 0.00098 18.5 0.1 0.0042 16.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|304313914|ref|YP_003849061.1| - 0.0046 16.5 0.0 0.0079 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fer4_15 PF13459.1 gi|304313914|ref|YP_003849061.1| - 0.005 17.3 12.8 0.068 13.7 0.7 2.8 3 0 0 3 3 2 2 4Fe-4S single cluster domain HTH_40 PF14493.1 gi|304313914|ref|YP_003849061.1| - 0.0069 16.5 0.1 0.0093 16.1 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|304313914|ref|YP_003849061.1| - 0.011 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Terminase_5 PF06056.7 gi|304313914|ref|YP_003849061.1| - 0.014 14.9 0.1 0.066 12.7 0.0 1.9 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|304313914|ref|YP_003849061.1| - 0.016 15.3 0.1 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix CENP-B_N PF04218.8 gi|304313914|ref|YP_003849061.1| - 0.023 14.0 0.0 0.053 12.9 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Fer4_3 PF12798.2 gi|304313914|ref|YP_003849061.1| - 0.025 15.0 22.5 0.029 14.9 2.4 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain RepB PF07506.6 gi|304313914|ref|YP_003849061.1| - 0.031 14.1 0.0 0.045 13.6 0.0 1.3 1 1 0 1 1 1 0 RepB plasmid partitioning protein Sigma70_r4 PF04545.11 gi|304313914|ref|YP_003849061.1| - 0.034 13.4 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|304313914|ref|YP_003849061.1| - 0.034 13.4 0.7 0.068 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_26 PF13443.1 gi|304313914|ref|YP_003849061.1| - 0.057 13.6 0.1 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Phage_NinH PF06322.6 gi|304313914|ref|YP_003849061.1| - 0.079 12.5 0.2 0.18 11.4 0.0 1.8 2 0 0 2 2 1 0 Phage NinH protein Aminotran_3 PF00202.16 gi|304313914|ref|YP_003849061.1| - 0.13 11.1 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III Fer4_13 PF13370.1 gi|304313914|ref|YP_003849061.1| - 0.13 12.6 15.8 0.28 11.6 1.2 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304313915|ref|YP_003849062.1| - 1.5e-54 179.5 90.9 1.4e-08 34.0 4.2 8.7 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304313915|ref|YP_003849062.1| - 3.3e-38 129.8 69.6 1.6e-12 47.6 7.3 5.4 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304313915|ref|YP_003849062.1| - 6.3e-34 115.5 76.3 3.8e-07 29.7 9.9 7.7 5 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304313915|ref|YP_003849062.1| - 4.6e-30 103.6 72.6 6.9e-08 32.6 4.5 5.9 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304313915|ref|YP_003849062.1| - 3.1e-29 99.5 93.6 7.9e-07 28.6 0.6 8.8 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304313915|ref|YP_003849062.1| - 1.8e-27 94.9 74.4 2.1e-09 37.1 9.3 6.3 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304313915|ref|YP_003849062.1| - 1.1e-25 88.0 87.1 3.1e-06 26.7 2.5 8.5 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304313915|ref|YP_003849062.1| - 1.2e-25 90.0 67.8 7.8e-07 29.7 4.5 6.7 5 1 2 7 7 7 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304313915|ref|YP_003849062.1| - 8.9e-22 76.8 71.9 2.8e-08 33.6 5.4 5.6 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304313915|ref|YP_003849062.1| - 2.5e-13 50.2 66.1 0.018 15.4 0.3 8.3 7 1 1 8 8 8 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304313915|ref|YP_003849062.1| - 3.3e-13 49.9 74.8 0.02 15.4 1.5 9.2 8 2 0 8 8 8 7 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304313915|ref|YP_003849062.1| - 2.4e-12 47.0 79.2 5.2e-05 23.5 7.4 7.1 2 2 7 9 9 9 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304313915|ref|YP_003849062.1| - 5e-12 45.1 85.6 0.0063 16.7 1.6 8.7 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304313915|ref|YP_003849062.1| - 5.7e-12 45.3 48.6 0.00019 21.2 9.4 4.9 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304313915|ref|YP_003849062.1| - 4.3e-09 36.6 90.1 0.012 15.9 2.4 9.1 8 1 1 9 9 9 7 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|304313915|ref|YP_003849062.1| - 2.9e-08 33.6 108.3 0.049 14.2 3.7 9.1 9 0 0 9 9 8 6 4Fe-4S binding domain zf-ribbon_3 PF13248.1 gi|304313915|ref|YP_003849062.1| - 0.11 11.7 0.1 0.11 11.7 0.1 7.1 9 0 0 9 9 8 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304313915|ref|YP_003849062.1| - 0.19 11.2 0.1 0.19 11.2 0.1 6.2 7 0 0 7 7 6 0 zinc-ribbon domain Fer4 PF00037.22 gi|304313916|ref|YP_003849063.1| - 2.5e-17 61.6 14.9 1.2e-08 34.1 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304313916|ref|YP_003849063.1| - 3.8e-13 49.6 19.4 1.6e-10 41.2 6.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304313916|ref|YP_003849063.1| - 3.3e-12 45.6 13.9 1.7e-06 27.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304313916|ref|YP_003849063.1| - 7.5e-11 42.1 7.9 1.5e-10 41.1 5.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304313916|ref|YP_003849063.1| - 7.6e-11 42.6 6.4 5e-05 23.9 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|304313916|ref|YP_003849063.1| - 9e-09 34.9 23.3 2.7e-06 27.0 8.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304313916|ref|YP_003849063.1| - 3.1e-08 33.5 19.1 7.1e-07 29.1 6.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304313916|ref|YP_003849063.1| - 3.1e-08 33.0 14.0 0.00014 21.5 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304313916|ref|YP_003849063.1| - 1.4e-07 31.2 9.4 0.0016 18.2 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304313916|ref|YP_003849063.1| - 4.8e-07 29.8 20.5 0.0014 19.0 5.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304313916|ref|YP_003849063.1| - 7.2e-06 25.9 13.5 0.002 18.3 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304313916|ref|YP_003849063.1| - 4.9e-05 23.5 10.6 0.00045 20.5 7.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304313916|ref|YP_003849063.1| - 5.9e-05 23.4 10.5 0.036 14.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304313916|ref|YP_003849063.1| - 0.00033 20.5 1.9 0.00091 19.0 1.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304313916|ref|YP_003849063.1| - 0.0072 16.8 11.8 0.1 13.1 0.3 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain RLI PF04068.10 gi|304313916|ref|YP_003849063.1| - 0.17 11.4 2.4 4.2 7.0 0.1 2.4 2 0 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_13 PF13370.1 gi|304313916|ref|YP_003849063.1| - 0.45 10.9 13.9 3.4 8.1 1.4 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|304313916|ref|YP_003849063.1| - 0.67 9.8 4.2 5.1 7.0 0.2 2.4 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster P12 PF12669.2 gi|304313916|ref|YP_003849063.1| - 4.6 7.5 7.5 7.3 6.8 0.3 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family Molydop_binding PF01568.16 gi|304313917|ref|YP_003849064.1| - 8.6e-20 70.6 0.1 1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF192 PF02643.10 gi|304313917|ref|YP_003849064.1| - 0.069 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized ACR, COG1430 CDC48_N PF02359.13 gi|304313917|ref|YP_003849064.1| - 0.074 13.0 0.1 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Amidohydro_3 PF07969.6 gi|304313918|ref|YP_003849065.1| - 2.5e-83 280.5 1.2 3e-83 280.3 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|304313918|ref|YP_003849065.1| - 8.6e-12 44.7 0.1 3.6e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|304313918|ref|YP_003849065.1| - 1.3e-07 31.9 0.4 0.00073 19.6 0.0 2.7 3 1 0 3 3 3 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|304313918|ref|YP_003849065.1| - 7.3e-05 22.5 0.2 0.11 12.1 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family GXGXG PF01493.14 gi|304313919|ref|YP_003849066.1| - 8.1e-44 149.0 20.7 1.3e-43 148.3 14.3 1.3 1 0 0 1 1 1 1 GXGXG motif Molybdopterin PF00384.17 gi|304313920|ref|YP_003849067.1| - 4.7e-18 65.1 0.0 1.5e-17 63.4 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase PcrB PF01884.12 gi|304313920|ref|YP_003849067.1| - 0.00045 19.5 0.0 0.0058 15.9 0.0 2.2 2 0 0 2 2 2 1 PcrB family TPP_enzyme_M PF00205.17 gi|304313920|ref|YP_003849067.1| - 0.021 14.5 0.1 3.2 7.5 0.1 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Fer4_NifH PF00142.13 gi|304313921|ref|YP_003849068.1| - 3.1e-133 443.1 2.6 3.4e-133 442.9 1.8 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|304313921|ref|YP_003849068.1| - 0.00016 21.1 0.0 0.00032 20.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|304313921|ref|YP_003849068.1| - 0.0048 15.9 1.8 0.0061 15.6 0.1 1.9 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|304313921|ref|YP_003849068.1| - 0.028 13.8 0.1 0.056 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|304313921|ref|YP_003849068.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|304313921|ref|YP_003849068.1| - 0.066 12.0 0.7 0.22 10.3 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain MHC_II_beta PF00969.14 gi|304313921|ref|YP_003849068.1| - 0.085 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Class II histocompatibility antigen, beta domain P-II PF00543.17 gi|304313922|ref|YP_003849069.1| - 3.7e-34 117.2 0.3 4.2e-34 117.0 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|304313922|ref|YP_003849069.1| - 0.00013 21.9 0.1 0.1 12.5 0.0 2.4 2 1 1 3 3 3 2 Protein of unknown function (DUF970) Imm26 PF15572.1 gi|304313922|ref|YP_003849069.1| - 0.15 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 26 P-II PF00543.17 gi|304313923|ref|YP_003849070.1| - 6.7e-35 119.6 0.5 9.1e-35 119.2 0.3 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.14 gi|304313924|ref|YP_003849071.1| - 5e-122 407.3 0.0 5.6e-122 407.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase AAA_17 PF13207.1 gi|304313924|ref|YP_003849071.1| - 0.032 15.0 0.4 0.48 11.2 0.2 2.6 1 1 1 2 2 2 0 AAA domain Oxidored_nitro PF00148.14 gi|304313925|ref|YP_003849072.1| - 1.4e-118 396.0 0.0 1.6e-118 395.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|304313926|ref|YP_003849073.1| - 8e-121 403.4 0.0 9.1e-121 403.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|304313927|ref|YP_003849074.1| - 1e-114 383.2 0.0 1.2e-114 383.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.12 gi|304313928|ref|YP_003849075.1| - 9.3e-17 60.8 0.0 1.1e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CTP_transf_2 PF01467.21 gi|304313928|ref|YP_003849075.1| - 0.14 12.2 0.0 0.22 11.5 0.0 1.3 1 1 0 1 1 1 0 Cytidylyltransferase Molybdopterin PF00384.17 gi|304313929|ref|YP_003849076.1| - 1.4e-55 188.7 0.0 2.9e-54 184.4 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|304313929|ref|YP_003849076.1| - 2.1e-11 43.6 0.0 5.8e-11 42.1 0.0 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|304313929|ref|YP_003849076.1| - 1.1e-08 34.7 1.7 2e-08 33.9 1.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2097 PF09870.4 gi|304313930|ref|YP_003849077.1| - 6e-32 109.5 0.4 6.8e-32 109.3 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) DUF128 PF01995.11 gi|304313931|ref|YP_003849078.1| - 3.8e-156 516.9 0.0 5.1e-82 274.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|304313931|ref|YP_003849078.1| - 4.1e-31 106.5 3.2 9.6e-31 105.3 2.2 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|304313931|ref|YP_003849078.1| - 0.017 15.0 0.4 0.047 13.7 0.3 1.7 1 0 0 1 1 1 0 HTH-like domain HTH_20 PF12840.2 gi|304313931|ref|YP_003849078.1| - 0.068 12.9 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Gln-synt_C PF00120.19 gi|304313932|ref|YP_003849079.1| - 1.2e-102 342.5 0.0 1.5e-102 342.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|304313932|ref|YP_003849079.1| - 1e-30 105.0 0.0 2e-30 104.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ThiF PF00899.16 gi|304313933|ref|YP_003849080.1| - 7.6e-43 145.5 0.1 1e-42 145.1 0.1 1.1 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|304313933|ref|YP_003849080.1| - 1.5e-07 30.8 0.0 4.4e-07 29.3 0.0 1.9 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|304313933|ref|YP_003849080.1| - 0.00028 20.9 0.0 0.0057 16.7 0.0 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|304313933|ref|YP_003849080.1| - 0.0025 17.0 0.1 0.0039 16.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|304313933|ref|YP_003849080.1| - 0.018 15.2 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|304313933|ref|YP_003849080.1| - 0.035 13.0 0.4 0.07 12.0 0.3 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|304313933|ref|YP_003849080.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF164 PF02591.10 gi|304313934|ref|YP_003849081.1| - 0.071 12.9 0.3 11 5.9 0.0 2.6 2 0 0 2 2 2 0 Putative zinc ribbon domain DUF2099 PF09872.4 gi|304313935|ref|YP_003849082.1| - 2.4e-111 370.8 0.6 2.7e-111 370.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) CBS PF00571.23 gi|304313936|ref|YP_003849083.1| - 8.1e-30 102.3 6.7 2.9e-15 55.7 0.5 2.1 2 0 0 2 2 2 2 CBS domain CDC48_2 PF02933.12 gi|304313936|ref|YP_003849083.1| - 0.044 13.4 0.8 0.076 12.6 0.1 1.8 2 1 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 ThiC PF01964.13 gi|304313937|ref|YP_003849084.1| - 4.6e-192 638.1 0.2 5.7e-192 637.8 0.1 1.0 1 0 0 1 1 1 1 ThiC family Glutaredoxin PF00462.19 gi|304313938|ref|YP_003849085.1| - 2.9e-12 46.3 0.0 4.3e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|304313938|ref|YP_003849085.1| - 4.8e-08 33.1 0.0 6.1e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|304313938|ref|YP_003849085.1| - 4.1e-07 29.8 0.0 5.1e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|304313938|ref|YP_003849085.1| - 0.0036 17.4 0.0 0.011 15.8 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain GST_N PF02798.15 gi|304313938|ref|YP_003849085.1| - 0.024 14.8 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Methyltransf_24 PF13578.1 gi|304313938|ref|YP_003849085.1| - 0.039 14.7 0.0 0.092 13.5 0.0 1.6 1 1 1 2 2 2 0 Methyltransferase domain ArsC PF03960.10 gi|304313938|ref|YP_003849085.1| - 0.059 13.4 0.0 0.27 11.3 0.0 1.9 1 1 1 2 2 2 0 ArsC family Thioredoxin_3 PF13192.1 gi|304313938|ref|YP_003849085.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain DUF836 PF05768.9 gi|304313938|ref|YP_003849085.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FeThRed_B PF02943.10 gi|304313939|ref|YP_003849086.1| - 9.3e-25 86.4 0.1 1.2e-24 86.1 0.1 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|304313939|ref|YP_003849086.1| - 0.022 14.1 1.1 0.022 14.1 0.7 2.0 2 0 0 2 2 2 0 RecR protein Prim_Zn_Ribbon PF08273.7 gi|304313939|ref|YP_003849086.1| - 0.044 13.8 0.5 0.044 13.8 0.3 3.2 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase Vpu PF00558.14 gi|304313939|ref|YP_003849086.1| - 0.08 12.5 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Vpu protein DUF1724 PF08350.5 gi|304313940|ref|YP_003849087.1| - 1e-13 50.5 0.1 1.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|304313940|ref|YP_003849087.1| - 0.0061 16.3 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|304313940|ref|YP_003849087.1| - 0.0069 16.0 0.9 0.012 15.2 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|304313940|ref|YP_003849087.1| - 0.065 12.8 0.1 0.31 10.6 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DNA_ligase_A_M PF01068.16 gi|304313941|ref|YP_003849088.1| - 1.6e-54 184.3 0.0 2.5e-54 183.7 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|304313941|ref|YP_003849088.1| - 4.5e-52 176.4 0.5 1.3e-50 171.6 0.4 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|304313941|ref|YP_003849088.1| - 4.8e-19 68.5 0.0 1.1e-18 67.3 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DUF2710 PF10921.3 gi|304313941|ref|YP_003849088.1| - 0.04 14.0 0.0 0.092 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) tRNA_anti-codon PF01336.20 gi|304313942|ref|YP_003849089.1| - 1e-11 44.5 0.0 1.4e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|304313942|ref|YP_003849089.1| - 2.5e-06 27.2 0.0 3.3e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|304313942|ref|YP_003849089.1| - 0.00074 19.0 1.0 0.0021 17.5 0.1 1.8 1 1 1 2 2 2 1 tRNA_anti-like DUF4131 PF13567.1 gi|304313942|ref|YP_003849089.1| - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Gmad2 PF10648.4 gi|304313942|ref|YP_003849089.1| - 0.029 14.5 0.3 0.42 10.8 0.1 2.1 1 1 1 2 2 2 0 Immunoglobulin-like domain of bacterial spore germination Ost4 PF10215.4 gi|304313942|ref|YP_003849089.1| - 0.57 9.7 2.7 0.87 9.1 1.9 1.3 1 0 0 1 1 1 0 Oligosaccaryltransferase Pro_CA PF00484.14 gi|304313943|ref|YP_003849090.1| - 1.2e-31 109.8 0.1 1.5e-31 109.4 0.1 1.1 1 0 0 1 1 1 1 Carbonic anhydrase PMT_2 PF13231.1 gi|304313944|ref|YP_003849091.1| - 1.2e-08 35.0 26.3 1.2e-08 35.0 18.3 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.4 gi|304313944|ref|YP_003849091.1| - 0.025 12.7 34.9 0.04 12.0 22.9 1.8 1 1 1 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein YobH PF13996.1 gi|304313944|ref|YP_003849091.1| - 0.026 14.4 4.4 4.5 7.2 0.6 3.6 3 0 0 3 3 3 0 YobH-like protein HAMP PF00672.20 gi|304313944|ref|YP_003849091.1| - 0.3 11.2 3.5 0.91 9.7 1.3 2.8 1 1 1 2 2 2 0 HAMP domain Lig_chan PF00060.21 gi|304313944|ref|YP_003849091.1| - 1.8 8.2 3.8 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Ligand-gated ion channel PGM_PMM_I PF02878.11 gi|304313945|ref|YP_003849092.1| - 4e-43 146.1 0.0 9e-43 145.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|304313945|ref|YP_003849092.1| - 2.4e-31 108.1 0.0 8.6e-31 106.3 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|304313945|ref|YP_003849092.1| - 3.1e-27 94.8 0.0 6.8e-27 93.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|304313945|ref|YP_003849092.1| - 2.6e-10 40.1 0.1 1.9e-09 37.3 0.0 2.4 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_23 PF13489.1 gi|304313945|ref|YP_003849092.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TPR_11 PF13414.1 gi|304313946|ref|YP_003849093.1| - 2.2e-64 213.0 15.2 3.8e-18 64.9 0.2 5.1 1 1 3 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|304313946|ref|YP_003849093.1| - 2.7e-61 200.8 4.0 2.8e-10 39.3 0.1 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304313946|ref|YP_003849093.1| - 1.6e-54 177.5 10.3 7.4e-09 34.8 0.2 7.5 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304313946|ref|YP_003849093.1| - 1.3e-40 134.1 8.8 2.3e-08 33.5 0.0 7.4 8 0 0 8 8 7 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304313946|ref|YP_003849093.1| - 1.1e-36 121.8 0.9 9.3e-06 25.0 0.0 7.4 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304313946|ref|YP_003849093.1| - 1.1e-35 121.5 14.6 1.3e-11 44.7 0.0 4.5 2 1 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304313946|ref|YP_003849093.1| - 8.7e-34 112.9 16.8 1.2e-06 28.5 0.1 7.3 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|304313946|ref|YP_003849093.1| - 2.1e-30 104.4 11.0 1.1e-11 44.5 0.0 5.3 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304313946|ref|YP_003849093.1| - 1.2e-27 96.0 6.6 2.3e-08 34.2 0.0 5.1 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304313946|ref|YP_003849093.1| - 1.5e-23 80.6 13.0 0.00033 20.2 0.1 7.4 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|304313946|ref|YP_003849093.1| - 5.4e-21 74.2 15.7 4.9e-08 32.7 0.7 4.6 1 1 3 5 5 5 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|304313946|ref|YP_003849093.1| - 8.4e-14 51.4 0.1 8.9e-05 22.5 0.0 4.1 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.1 gi|304313946|ref|YP_003849093.1| - 5.2e-13 48.6 5.8 4.9e-06 25.7 0.0 3.1 1 1 0 2 2 2 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|304313946|ref|YP_003849093.1| - 1.7e-11 43.5 0.3 0.0043 15.8 0.0 4.2 2 2 2 4 4 4 3 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|304313946|ref|YP_003849093.1| - 5e-11 42.2 3.3 2.5 8.7 0.0 6.8 7 0 0 7 7 6 1 Tetratricopeptide repeat BTAD PF03704.12 gi|304313946|ref|YP_003849093.1| - 8.7e-10 39.0 12.4 0.00039 20.7 0.0 3.8 2 1 1 4 4 4 2 Bacterial transcriptional activator domain MIT PF04212.13 gi|304313946|ref|YP_003849093.1| - 3.5e-08 33.2 3.1 4.1 7.3 0.0 5.9 7 0 0 7 7 6 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|304313946|ref|YP_003849093.1| - 3.8e-07 30.0 4.1 1 9.1 0.1 5.1 3 1 0 4 4 4 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|304313946|ref|YP_003849093.1| - 4.8e-07 29.5 3.3 3.1 8.4 0.0 5.8 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|304313946|ref|YP_003849093.1| - 7.8e-07 29.1 4.4 1.6 8.9 0.2 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|304313946|ref|YP_003849093.1| - 1.3e-06 28.1 6.6 2 8.3 0.0 6.4 7 0 0 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat ASCH PF04266.9 gi|304313946|ref|YP_003849093.1| - 1.9e-06 28.2 0.2 4e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 ASCH domain ChAPs PF09295.5 gi|304313946|ref|YP_003849093.1| - 1.1e-05 24.3 0.0 0.069 11.9 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_5 PF12688.2 gi|304313946|ref|YP_003849093.1| - 5.8e-05 23.1 0.3 0.32 11.0 0.1 2.9 1 1 0 2 2 2 2 Tetratrico peptide repeat TPR_10 PF13374.1 gi|304313946|ref|YP_003849093.1| - 9.6e-05 22.1 32.7 0.18 11.8 0.1 7.9 9 0 0 9 9 8 3 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|304313946|ref|YP_003849093.1| - 0.00035 20.2 0.8 0.11 12.1 0.0 4.2 1 1 5 6 6 6 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|304313946|ref|YP_003849093.1| - 0.00048 20.0 0.4 2.1 8.2 0.0 4.4 4 1 1 5 5 5 1 Tetratricopeptide repeat PPTA PF01239.17 gi|304313946|ref|YP_003849093.1| - 0.00055 19.1 3.2 0.67 9.4 0.0 4.5 5 0 0 5 5 5 1 Protein prenyltransferase alpha subunit repeat Coatomer_E PF04733.9 gi|304313946|ref|YP_003849093.1| - 0.00066 18.9 0.4 0.35 10.0 0.2 2.9 1 1 2 3 3 3 1 Coatomer epsilon subunit FAT PF02259.18 gi|304313946|ref|YP_003849093.1| - 0.0012 17.9 0.0 2.1 7.2 0.0 3.2 1 1 1 3 3 3 2 FAT domain Sel1 PF08238.7 gi|304313946|ref|YP_003849093.1| - 0.004 17.7 0.5 2.8 8.7 0.0 3.6 3 0 0 3 3 3 1 Sel1 repeat NdhM PF10664.4 gi|304313946|ref|YP_003849093.1| - 0.012 15.5 0.5 7.6 6.5 0.0 3.3 2 2 1 3 3 3 0 Cyanobacterial and plastid NDH-1 subunit M PPR PF01535.15 gi|304313946|ref|YP_003849093.1| - 0.018 15.0 8.6 22 5.2 0.0 6.1 6 0 0 6 6 6 0 PPR repeat SHNi-TPR PF10516.4 gi|304313946|ref|YP_003849093.1| - 0.029 13.6 11.6 1.2 8.4 0.0 4.9 5 0 0 5 5 5 0 SHNi-TPR DUF4082 PF13313.1 gi|304313946|ref|YP_003849093.1| - 0.03 13.7 0.0 0.08 12.3 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4082) Radical_SAM PF04055.16 gi|304313947|ref|YP_003849094.1| - 6e-21 75.3 0.0 9.1e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304313947|ref|YP_003849094.1| - 8.5e-16 58.3 0.0 1.3e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304313947|ref|YP_003849094.1| - 2.1e-10 40.6 0.0 3.5e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PilI PF10623.4 gi|304313947|ref|YP_003849094.1| - 0.085 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Plasmid conjugative transfer protein PilI Aminotran_1_2 PF00155.16 gi|304313948|ref|YP_003849095.1| - 2.7e-59 200.9 0.0 3.1e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|304313948|ref|YP_003849095.1| - 3.5e-10 39.1 0.0 1.5e-06 27.2 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|304313948|ref|YP_003849095.1| - 3.7e-07 28.7 0.0 6e-07 28.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|304313948|ref|YP_003849095.1| - 1.9e-06 26.7 0.0 1.1e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Allinase DegT_DnrJ_EryC1 PF01041.12 gi|304313948|ref|YP_003849095.1| - 0.017 14.1 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Hexapep PF00132.19 gi|304313949|ref|YP_003849096.1| - 1.5e-15 55.8 12.7 5.7e-08 31.9 1.2 4.1 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|304313949|ref|YP_003849096.1| - 4e-07 29.4 7.5 0.00024 20.6 1.2 4.4 3 2 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase NTP_transferase PF00483.18 gi|304313950|ref|YP_003849097.1| - 3.8e-44 150.8 0.0 4.7e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|304313950|ref|YP_003849097.1| - 1.9e-21 74.5 32.4 3.3e-07 29.5 1.5 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|304313950|ref|YP_003849097.1| - 9.8e-15 54.9 0.0 1.3e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|304313950|ref|YP_003849097.1| - 9.1e-08 31.5 26.2 0.003 17.0 2.9 4.9 4 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|304313950|ref|YP_003849097.1| - 0.00018 21.1 0.0 0.00028 20.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|304313951|ref|YP_003849098.1| - 7.5e-44 148.5 0.0 1.2e-43 147.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|304313951|ref|YP_003849098.1| - 4.6e-28 97.5 0.1 9.9e-28 96.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|304313951|ref|YP_003849098.1| - 9.3e-19 67.5 0.0 1.9e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|304313951|ref|YP_003849098.1| - 6.9e-14 51.5 0.0 1.4e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Metalloenzyme PF01676.13 gi|304313952|ref|YP_003849099.1| - 1.1e-61 208.3 0.0 1.3e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PhosphMutase PF10143.4 gi|304313952|ref|YP_003849099.1| - 2e-61 206.6 0.0 2.8e-61 206.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Phosphodiest PF01663.17 gi|304313952|ref|YP_003849099.1| - 0.004 16.5 0.1 0.088 12.1 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF92 PF01940.11 gi|304313953|ref|YP_003849100.1| - 3.6e-63 212.7 12.8 4.2e-63 212.5 8.8 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 DUF3951 PF13131.1 gi|304313953|ref|YP_003849100.1| - 1.1 9.1 8.4 10 5.9 0.2 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) DUF2244 PF10003.4 gi|304313953|ref|YP_003849100.1| - 3.2 7.1 6.8 0.2 11.0 0.9 1.8 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Wzy_C PF04932.10 gi|304313953|ref|YP_003849100.1| - 3.7 7.3 11.7 1.5 8.6 3.4 2.1 2 0 0 2 2 2 0 O-Antigen ligase Ribosomal_S3Ae PF01015.13 gi|304313954|ref|YP_003849101.1| - 1.2e-72 243.3 5.9 1.3e-72 243.2 4.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.20 gi|304313954|ref|YP_003849101.1| - 0.0031 17.4 0.1 0.072 12.9 0.1 2.2 1 1 1 2 2 2 1 SPFH domain / Band 7 family PEP_mutase PF13714.1 gi|304313954|ref|YP_003849101.1| - 0.022 13.9 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Abhydro_lipase PF04083.11 gi|304313954|ref|YP_003849101.1| - 0.077 12.3 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Nitro_FeMo-Co PF02579.12 gi|304313955|ref|YP_003849102.1| - 2.4e-18 65.9 0.0 2.7e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF4062 PF13271.1 gi|304313955|ref|YP_003849102.1| - 0.029 14.3 0.1 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4062) DUF2148 PF09918.4 gi|304313955|ref|YP_003849102.1| - 0.088 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) FMN_red PF03358.10 gi|304313956|ref|YP_003849103.1| - 2.2e-24 85.7 0.0 2.6e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|304313956|ref|YP_003849103.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold PNP_UDP_1 PF01048.15 gi|304313957|ref|YP_003849104.1| - 3.9e-45 153.6 0.0 4.5e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily RtcB PF01139.12 gi|304313958|ref|YP_003849105.1| - 4.4e-154 513.5 0.0 5e-154 513.3 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|304313959|ref|YP_003849106.1| - 3.8e-38 130.5 0.7 4.2e-38 130.3 0.5 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF3566 PF12089.3 gi|304313960|ref|YP_003849107.1| - 0.19 11.7 2.3 0.22 11.5 1.6 1.0 1 0 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) Sec62 PF03839.11 gi|304313960|ref|YP_003849107.1| - 0.2 11.0 0.8 0.2 11.0 0.5 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 AAA_16 PF13191.1 gi|304313961|ref|YP_003849108.1| - 8.8e-08 32.3 0.0 7.2e-07 29.3 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|304313961|ref|YP_003849108.1| - 1.3e-06 28.5 0.0 2.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|304313961|ref|YP_003849108.1| - 0.0017 18.0 0.0 0.0058 16.3 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_11 PF13086.1 gi|304313961|ref|YP_003849108.1| - 0.0057 16.2 0.0 0.053 13.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|304313961|ref|YP_003849108.1| - 0.0097 15.6 0.1 0.031 13.9 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal T2SE PF00437.15 gi|304313961|ref|YP_003849108.1| - 0.037 12.9 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|304313961|ref|YP_003849108.1| - 0.044 13.6 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|304313961|ref|YP_003849108.1| - 0.11 11.1 0.1 1.1 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|304313961|ref|YP_003849108.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MAF_flag10 PF01973.13 gi|304313962|ref|YP_003849109.1| - 1.9e-38 131.6 0.0 2.3e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|304313962|ref|YP_003849109.1| - 0.0032 17.0 0.0 0.16 11.5 0.0 2.2 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain DUF3134 PF11332.3 gi|304313962|ref|YP_003849109.1| - 0.085 13.0 0.3 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3134) Aminotran_5 PF00266.14 gi|304313963|ref|YP_003849110.1| - 9.4e-42 143.0 0.0 1.1e-41 142.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V MCR_beta_N PF02783.10 gi|304313963|ref|YP_003849110.1| - 0.049 13.0 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Cys_Met_Meta_PP PF01053.15 gi|304313963|ref|YP_003849110.1| - 0.053 11.8 0.1 0.16 10.2 0.0 1.7 1 1 1 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme TPP_enzyme_N PF02776.13 gi|304313964|ref|YP_003849111.1| - 1.7e-49 167.6 0.1 3e-49 166.8 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|304313964|ref|YP_003849111.1| - 1.3e-39 135.2 0.4 3.9e-39 133.6 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|304313964|ref|YP_003849111.1| - 3.6e-28 98.0 0.0 7.2e-28 97.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain AMP-binding PF00501.23 gi|304313965|ref|YP_003849112.1| - 1.1e-98 330.3 0.0 1.4e-98 330.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|304313965|ref|YP_003849112.1| - 3.1e-23 82.5 0.4 6.4e-23 81.4 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain dUTPase PF00692.14 gi|304313966|ref|YP_003849113.1| - 6.5e-13 48.2 0.0 9.6e-13 47.7 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|304313966|ref|YP_003849113.1| - 0.067 11.5 0.0 0.84 7.9 0.0 2.0 2 0 0 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Tautomerase PF01361.16 gi|304313967|ref|YP_003849114.1| - 4.9e-19 67.7 0.0 5.2e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|304313967|ref|YP_003849114.1| - 1.9e-06 27.7 0.0 2e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|304313967|ref|YP_003849114.1| - 6e-05 23.0 0.0 6.5e-05 22.9 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme MIF PF01187.13 gi|304313967|ref|YP_003849114.1| - 0.13 12.4 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Macrophage migration inhibitory factor (MIF) RRF PF01765.14 gi|304313967|ref|YP_003849114.1| - 0.14 11.6 0.3 0.15 11.5 0.2 1.1 1 0 0 1 1 1 0 Ribosome recycling factor GAF_2 PF13185.1 gi|304313968|ref|YP_003849115.1| - 5e-16 59.5 0.0 9.3e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|304313968|ref|YP_003849115.1| - 5.4e-16 58.5 0.0 9.8e-16 57.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|304313968|ref|YP_003849115.1| - 1e-12 48.4 0.0 1.6e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|304313968|ref|YP_003849115.1| - 2e-09 37.6 0.0 4.7e-09 36.4 0.0 1.6 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|304313968|ref|YP_003849115.1| - 0.0028 17.4 0.1 0.0085 15.9 0.1 1.9 1 1 0 1 1 1 1 PAS domain Peripla_BP_2 PF01497.13 gi|304313968|ref|YP_003849115.1| - 0.024 13.7 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein SRP54 PF00448.17 gi|304313969|ref|YP_003849116.1| - 3.6e-76 254.9 1.9 5.4e-76 254.4 1.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|304313969|ref|YP_003849116.1| - 2.5e-15 56.3 5.0 6.3e-15 55.0 2.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|304313969|ref|YP_003849116.1| - 2.2e-07 30.6 1.5 3.1e-05 23.6 0.1 2.5 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|304313969|ref|YP_003849116.1| - 1.6e-05 24.6 1.2 2.7e-05 23.8 0.8 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|304313969|ref|YP_003849116.1| - 0.00011 21.3 0.5 0.00021 20.4 0.2 1.5 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|304313969|ref|YP_003849116.1| - 0.00075 19.2 0.9 0.0021 17.7 0.1 2.2 2 1 1 3 3 2 1 Part of AAA domain ArgK PF03308.11 gi|304313969|ref|YP_003849116.1| - 0.00083 18.2 2.0 0.0021 16.8 1.4 1.7 1 1 0 1 1 1 1 ArgK protein AAA_33 PF13671.1 gi|304313969|ref|YP_003849116.1| - 0.0011 18.8 0.1 0.0029 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|304313969|ref|YP_003849116.1| - 0.0036 17.4 1.5 0.014 15.6 0.3 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|304313969|ref|YP_003849116.1| - 0.0041 16.5 2.6 0.014 14.8 1.8 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|304313969|ref|YP_003849116.1| - 0.0061 16.7 0.3 0.021 14.9 0.1 2.0 2 1 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|304313969|ref|YP_003849116.1| - 0.012 15.0 6.1 0.026 13.9 2.4 2.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain 6PF2K PF01591.13 gi|304313969|ref|YP_003849116.1| - 0.017 14.1 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase Thymidylate_kin PF02223.12 gi|304313969|ref|YP_003849116.1| - 0.02 14.3 0.4 0.073 12.4 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase AAA_17 PF13207.1 gi|304313969|ref|YP_003849116.1| - 0.029 15.2 1.7 0.062 14.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|304313969|ref|YP_003849116.1| - 0.045 13.3 0.1 0.099 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|304313969|ref|YP_003849116.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.5 1 1 0 1 1 1 0 Torsin APS_kinase PF01583.15 gi|304313969|ref|YP_003849116.1| - 0.049 13.2 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase Helicase_RecD PF05127.9 gi|304313969|ref|YP_003849116.1| - 0.075 12.6 0.2 0.19 11.3 0.2 1.6 1 0 0 1 1 1 0 Helicase DUF258 PF03193.11 gi|304313969|ref|YP_003849116.1| - 0.093 11.9 0.0 0.27 10.3 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|304313969|ref|YP_003849116.1| - 0.14 12.0 0.9 0.33 10.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|304313969|ref|YP_003849116.1| - 0.16 10.8 1.7 0.2 10.4 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.10 gi|304313969|ref|YP_003849116.1| - 0.19 11.3 4.6 4.5 6.9 0.2 2.9 2 1 1 3 3 3 0 NTPase TFIIF_alpha PF05793.7 gi|304313969|ref|YP_003849116.1| - 2 6.6 10.4 3 6.1 7.2 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Prefoldin PF02996.12 gi|304313970|ref|YP_003849117.1| - 6.7e-29 99.9 6.9 1e-28 99.4 4.8 1.3 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|304313970|ref|YP_003849117.1| - 0.0007 19.3 14.8 0.016 14.9 10.1 2.4 1 1 0 1 1 1 1 Prefoldin subunit Desmo_N PF06771.6 gi|304313970|ref|YP_003849117.1| - 0.0029 17.5 0.4 0.0063 16.4 0.0 1.7 2 0 0 2 2 1 1 Viral Desmoplakin N-terminus Cob_adeno_trans PF01923.13 gi|304313970|ref|YP_003849117.1| - 0.016 14.9 5.4 0.023 14.4 0.1 2.0 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DUF892 PF05974.7 gi|304313970|ref|YP_003849117.1| - 0.017 14.9 1.0 0.017 14.9 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) NPV_P10 PF05531.7 gi|304313970|ref|YP_003849117.1| - 0.017 15.3 8.9 0.21 11.8 0.2 2.4 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|304313970|ref|YP_003849117.1| - 0.027 14.2 0.5 0.027 14.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) FliD_N PF02465.13 gi|304313970|ref|YP_003849117.1| - 0.029 14.7 3.6 0.044 14.1 0.2 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Phasin_2 PF09361.5 gi|304313970|ref|YP_003849117.1| - 0.061 13.3 2.7 2.4 8.2 0.1 2.4 2 0 0 2 2 2 0 Phasin protein DUF479 PF04336.7 gi|304313970|ref|YP_003849117.1| - 0.064 13.3 2.2 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF479 ERK-JNK_inhib PF15002.1 gi|304313970|ref|YP_003849117.1| - 0.066 12.5 0.2 0.066 12.5 0.2 1.9 1 1 1 2 2 2 0 ERK and JNK pathways, inhibitor Mer2 PF09074.5 gi|304313970|ref|YP_003849117.1| - 0.073 12.9 8.1 0.11 12.3 5.6 1.3 1 1 0 1 1 1 0 Mer2 WXG100 PF06013.7 gi|304313970|ref|YP_003849117.1| - 0.081 12.9 4.8 0.55 10.2 0.1 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Med30 PF11315.3 gi|304313970|ref|YP_003849117.1| - 0.086 12.9 5.0 0.31 11.1 3.2 1.9 1 1 0 1 1 1 0 Mediator complex subunit 30 Nucleoporin_C PF03177.9 gi|304313970|ref|YP_003849117.1| - 0.11 11.0 1.8 0.12 10.8 1.3 1.2 1 1 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal YlqD PF11068.3 gi|304313970|ref|YP_003849117.1| - 0.12 12.4 7.7 0.42 10.6 0.2 2.2 2 0 0 2 2 2 0 YlqD protein Sin3_corepress PF08295.7 gi|304313970|ref|YP_003849117.1| - 0.12 12.1 2.2 4.6 7.0 0.0 2.3 2 1 0 2 2 2 0 Sin3 family co-repressor Prominin PF05478.6 gi|304313970|ref|YP_003849117.1| - 0.14 9.7 5.7 0.17 9.3 4.0 1.1 1 0 0 1 1 1 0 Prominin Borrelia_lipo_1 PF05714.6 gi|304313970|ref|YP_003849117.1| - 0.14 11.1 8.6 0.24 10.4 6.0 1.3 1 1 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein USP8_interact PF08941.5 gi|304313970|ref|YP_003849117.1| - 0.17 11.1 2.9 4.7 6.5 0.3 2.1 2 0 0 2 2 2 0 USP8 interacting CK2S PF15011.1 gi|304313970|ref|YP_003849117.1| - 0.17 11.6 4.7 0.19 11.4 0.1 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate Nsp1_C PF05064.8 gi|304313970|ref|YP_003849117.1| - 0.2 11.2 0.1 0.2 11.2 0.1 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF2524 PF10732.4 gi|304313970|ref|YP_003849117.1| - 0.21 11.7 6.2 17 5.6 3.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) DUF4473 PF14747.1 gi|304313970|ref|YP_003849117.1| - 0.27 11.4 2.9 0.68 10.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Noelin-1 PF12308.3 gi|304313970|ref|YP_003849117.1| - 0.29 10.9 2.7 1.4 8.7 0.1 2.3 1 1 1 2 2 2 0 Neurogenesis glycoprotein COG2 PF06148.6 gi|304313970|ref|YP_003849117.1| - 0.35 10.7 5.2 2 8.2 0.1 2.4 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-F_leu_zip PF10473.4 gi|304313970|ref|YP_003849117.1| - 0.41 10.5 14.3 13 5.6 7.3 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mod_r PF07200.8 gi|304313970|ref|YP_003849117.1| - 0.44 10.4 7.0 0.58 10.0 4.5 1.5 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein LTXXQ PF07813.7 gi|304313970|ref|YP_003849117.1| - 0.44 11.0 4.9 3.5 8.1 3.4 2.1 1 1 0 1 1 1 0 LTXXQ motif family protein DUF1043 PF06295.7 gi|304313970|ref|YP_003849117.1| - 0.45 10.1 5.8 0.5 10.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) Effector_1 PF04518.7 gi|304313970|ref|YP_003849117.1| - 0.47 9.4 7.8 0.35 9.8 1.7 2.0 1 1 1 2 2 2 0 Effector from type III secretion system KxDL PF10241.4 gi|304313970|ref|YP_003849117.1| - 0.6 10.0 3.9 1 9.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein TPR_MLP1_2 PF07926.7 gi|304313970|ref|YP_003849117.1| - 0.65 9.7 12.4 3.7 7.2 0.4 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Apolipoprotein PF01442.13 gi|304313970|ref|YP_003849117.1| - 0.66 9.4 8.3 6.3 6.2 5.7 2.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF4200 PF13863.1 gi|304313970|ref|YP_003849117.1| - 0.72 9.8 10.3 0.63 9.9 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF2317 PF10079.4 gi|304313970|ref|YP_003849117.1| - 0.84 8.1 5.5 2.5 6.6 3.8 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF972 PF06156.8 gi|304313970|ref|YP_003849117.1| - 1.1 9.6 6.8 6.3 7.1 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) LXG PF04740.7 gi|304313970|ref|YP_003849117.1| - 1.2 8.8 8.5 7.5 6.2 2.3 2.2 2 0 0 2 2 2 0 LXG domain of WXG superfamily RasGAP_C PF03836.10 gi|304313970|ref|YP_003849117.1| - 1.7 8.3 7.5 21 4.7 2.8 2.7 2 1 0 2 2 2 0 RasGAP C-terminus Tup_N PF08581.5 gi|304313970|ref|YP_003849117.1| - 1.7 8.8 10.7 10 6.3 0.2 2.4 2 0 0 2 2 2 0 Tup N-terminal GrpE PF01025.14 gi|304313970|ref|YP_003849117.1| - 1.7 8.1 6.5 3.5 7.1 0.7 2.2 2 0 0 2 2 2 0 GrpE MerR-DNA-bind PF09278.6 gi|304313970|ref|YP_003849117.1| - 2 8.8 6.6 3.4 8.1 1.8 2.5 2 1 0 2 2 2 0 MerR, DNA binding DUF948 PF06103.6 gi|304313970|ref|YP_003849117.1| - 2.3 8.1 7.0 4.4 7.2 0.4 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Tweety PF04906.8 gi|304313970|ref|YP_003849117.1| - 2.5 6.4 5.0 3.3 6.0 1.2 2.0 2 0 0 2 2 2 0 Tweety CENP-Q PF13094.1 gi|304313970|ref|YP_003849117.1| - 2.9 7.9 7.8 1.7 8.6 0.4 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FemAB PF02388.11 gi|304313970|ref|YP_003849117.1| - 3 6.4 6.8 5.9 5.4 0.4 2.0 2 0 0 2 2 2 0 FemAB family Spc24 PF08286.6 gi|304313970|ref|YP_003849117.1| - 3 7.5 8.6 2.4 7.8 1.8 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF3782 PF12644.2 gi|304313970|ref|YP_003849117.1| - 3.1 7.6 6.2 16 5.3 0.0 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3782) DUF16 PF01519.11 gi|304313970|ref|YP_003849117.1| - 3.2 8.0 13.2 3.6 7.8 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 H-kinase_dim PF02895.9 gi|304313970|ref|YP_003849117.1| - 3.6 8.0 7.7 13 6.1 0.1 2.3 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain MutS_IV PF05190.13 gi|304313970|ref|YP_003849117.1| - 4.5 7.5 6.0 17 5.6 0.2 2.6 3 0 0 3 3 2 0 MutS family domain IV DUF4140 PF13600.1 gi|304313970|ref|YP_003849117.1| - 6.9 7.1 7.7 6.5 7.2 1.3 2.6 2 2 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Fzo_mitofusin PF04799.8 gi|304313970|ref|YP_003849117.1| - 8.8 5.6 7.8 17 4.7 0.1 2.2 2 0 0 2 2 2 0 fzo-like conserved region Ribosomal_L18ae PF01775.12 gi|304313971|ref|YP_003849118.1| - 3.5e-11 43.0 0.1 4.1e-11 42.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Lipoprotein_Ltp PF07553.6 gi|304313971|ref|YP_003849118.1| - 0.086 12.7 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein eIF-6 PF01912.13 gi|304313972|ref|YP_003849119.1| - 2.8e-65 219.1 5.4 3.5e-65 218.8 3.4 1.4 1 1 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|304313973|ref|YP_003849120.1| - 1.4e-28 98.4 3.5 1.5e-28 98.2 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e CsrA PF02599.11 gi|304313973|ref|YP_003849120.1| - 0.16 11.7 2.0 0.17 11.6 0.2 2.0 1 1 1 2 2 2 0 Global regulator protein family Ribosomal_L39 PF00832.15 gi|304313974|ref|YP_003849121.1| - 2.8e-22 77.8 15.0 3.4e-22 77.6 10.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.16 gi|304313975|ref|YP_003849122.1| - 8.5e-05 22.1 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|304313975|ref|YP_003849122.1| - 0.008 15.4 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|304313975|ref|YP_003849122.1| - 0.033 13.5 0.1 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region dsDNA_bind PF01984.15 gi|304313976|ref|YP_003849123.1| - 1.8e-32 111.5 22.8 2e-32 111.3 15.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF945 PF06097.6 gi|304313976|ref|YP_003849123.1| - 0.042 12.6 4.0 0.043 12.6 2.8 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) Meckelin PF09773.4 gi|304313976|ref|YP_003849123.1| - 0.16 9.6 4.1 0.18 9.5 2.9 1.0 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) ClpB_D2-small PF10431.4 gi|304313976|ref|YP_003849123.1| - 1.6 8.7 10.6 4.5 7.2 2.0 2.8 1 1 1 3 3 3 0 C-terminal, D2-small domain, of ClpB protein Ribosomal_S19e PF01090.14 gi|304313977|ref|YP_003849124.1| - 1.8e-60 202.4 0.0 2e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|304313977|ref|YP_003849124.1| - 0.0011 18.7 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|304313977|ref|YP_003849124.1| - 0.0079 15.7 0.0 0.026 14.0 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HemN_C PF06969.11 gi|304313977|ref|YP_003849124.1| - 0.009 16.0 0.1 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain HTH_12 PF08461.5 gi|304313977|ref|YP_003849124.1| - 0.017 14.8 0.1 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain RuvB_C PF05491.8 gi|304313977|ref|YP_003849124.1| - 0.021 14.4 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus GntR PF00392.16 gi|304313977|ref|YP_003849124.1| - 0.039 13.3 0.1 0.085 12.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CRS1_YhbY PF01985.16 gi|304313978|ref|YP_003849125.1| - 3.3e-20 71.8 0.5 3.9e-20 71.6 0.4 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain EcoR124_C PF12008.3 gi|304313978|ref|YP_003849125.1| - 0.031 13.4 0.3 0.033 13.3 0.2 1.0 1 0 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal Nab6_mRNP_bdg PF10567.4 gi|304313978|ref|YP_003849125.1| - 0.054 12.4 0.1 0.062 12.2 0.1 1.0 1 0 0 1 1 1 0 RNA-recognition motif Ribosomal_L10 PF00466.15 gi|304313978|ref|YP_003849125.1| - 0.06 13.2 0.4 0.14 12.0 0.3 1.6 1 1 0 1 1 1 0 Ribosomal protein L10 Rpr2 PF04032.11 gi|304313979|ref|YP_003849126.1| - 5.4e-21 74.2 0.2 7.4e-21 73.8 0.1 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Antitoxin-MazE PF04014.13 gi|304313979|ref|YP_003849126.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TF_Zn_Ribbon PF08271.7 gi|304313979|ref|YP_003849126.1| - 0.027 13.8 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|304313979|ref|YP_003849126.1| - 0.036 13.8 0.6 0.065 13.0 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L40e PF01020.12 gi|304313979|ref|YP_003849126.1| - 0.13 11.8 7.6 3.3 7.3 5.3 2.3 1 1 0 1 1 1 0 Ribosomal L40e family SBP PF03110.9 gi|304313979|ref|YP_003849126.1| - 2.7 8.2 7.1 12 6.2 0.5 2.4 1 1 1 2 2 2 0 SBP domain AAA_18 PF13238.1 gi|304313980|ref|YP_003849127.1| - 8.4e-23 81.0 0.0 1.1e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304313980|ref|YP_003849127.1| - 4.5e-14 53.2 0.0 6.8e-14 52.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|304313980|ref|YP_003849127.1| - 1.9e-05 24.6 0.5 0.00026 20.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|304313980|ref|YP_003849127.1| - 0.00018 21.3 0.0 0.028 14.3 0.0 2.6 2 1 1 3 3 3 1 Shikimate kinase AAA_19 PF13245.1 gi|304313980|ref|YP_003849127.1| - 0.00076 19.1 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain ArgK PF03308.11 gi|304313980|ref|YP_003849127.1| - 0.0068 15.2 0.3 0.033 12.9 0.0 1.9 2 0 0 2 2 2 1 ArgK protein NTPase_1 PF03266.10 gi|304313980|ref|YP_003849127.1| - 0.02 14.6 0.2 0.048 13.3 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA PF00004.24 gi|304313980|ref|YP_003849127.1| - 0.023 14.9 0.1 0.088 13.0 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|304313980|ref|YP_003849127.1| - 0.026 14.4 0.1 0.067 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain CoaE PF01121.15 gi|304313980|ref|YP_003849127.1| - 0.029 13.7 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase KTI12 PF08433.5 gi|304313980|ref|YP_003849127.1| - 0.037 13.2 0.0 0.07 12.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|304313980|ref|YP_003849127.1| - 0.039 14.0 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|304313980|ref|YP_003849127.1| - 0.1 12.3 0.0 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|304313980|ref|YP_003849127.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|304313980|ref|YP_003849127.1| - 0.15 11.9 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Thi4 PF01946.12 gi|304313981|ref|YP_003849128.1| - 3e-105 350.4 0.5 3.6e-105 350.1 0.4 1.1 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|304313981|ref|YP_003849128.1| - 5.8e-10 38.8 0.8 1.1e-09 37.9 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.19 gi|304313981|ref|YP_003849128.1| - 8.2e-09 34.8 3.8 1.4e-05 24.1 1.2 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|304313981|ref|YP_003849128.1| - 8.2e-07 28.9 3.6 1.2e-06 28.3 1.3 2.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|304313981|ref|YP_003849128.1| - 1.8e-05 23.8 5.0 0.0029 16.5 1.2 2.5 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|304313981|ref|YP_003849128.1| - 0.00021 21.2 0.1 0.00031 20.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|304313981|ref|YP_003849128.1| - 0.00064 18.8 0.1 0.00081 18.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|304313981|ref|YP_003849128.1| - 0.0011 19.1 0.8 0.0031 17.6 0.6 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|304313981|ref|YP_003849128.1| - 0.004 15.6 1.7 0.0065 14.9 1.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.19 gi|304313981|ref|YP_003849128.1| - 0.005 15.9 0.6 0.018 14.1 0.1 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|304313981|ref|YP_003849128.1| - 0.012 14.5 0.7 0.012 14.5 0.5 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|304313981|ref|YP_003849128.1| - 0.06 13.7 0.4 0.15 12.4 0.3 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TGS PF02824.16 gi|304313982|ref|YP_003849129.1| - 7.6e-22 76.9 0.1 1.4e-21 76.0 0.1 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|304313982|ref|YP_003849129.1| - 4.7e-21 74.9 0.1 9.6e-21 73.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|304313982|ref|YP_003849129.1| - 1e-15 57.3 0.3 3.2e-15 55.7 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|304313982|ref|YP_003849129.1| - 0.00012 21.9 0.1 0.44 10.3 0.1 2.4 1 1 1 2 2 2 2 Dynamin family Miro PF08477.8 gi|304313982|ref|YP_003849129.1| - 0.0003 21.2 0.5 0.0012 19.3 0.0 2.2 3 0 0 3 3 2 1 Miro-like protein Arf PF00025.16 gi|304313982|ref|YP_003849129.1| - 0.00061 19.0 0.4 0.018 14.2 0.1 2.5 2 1 0 2 2 2 1 ADP-ribosylation factor family GTP_EFTU PF00009.22 gi|304313982|ref|YP_003849129.1| - 0.0015 17.9 0.3 0.13 11.6 0.0 2.6 3 0 0 3 3 2 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|304313982|ref|YP_003849129.1| - 0.0032 16.6 0.1 0.0053 15.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|304313982|ref|YP_003849129.1| - 0.0064 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|304313982|ref|YP_003849129.1| - 0.009 16.0 0.0 0.035 14.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AIG1 PF04548.11 gi|304313982|ref|YP_003849129.1| - 0.015 14.4 0.1 0.032 13.3 0.0 1.6 1 0 0 1 1 1 0 AIG1 family cobW PF02492.14 gi|304313982|ref|YP_003849129.1| - 0.018 14.4 1.9 0.63 9.4 0.0 2.9 3 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|304313982|ref|YP_003849129.1| - 0.025 13.3 0.1 0.083 11.6 0.0 1.9 2 0 0 2 2 2 0 ArgK protein ATP_bind_1 PF03029.12 gi|304313982|ref|YP_003849129.1| - 0.027 13.9 0.0 3 7.3 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|304313982|ref|YP_003849129.1| - 0.032 13.4 0.0 0.061 12.5 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|304313982|ref|YP_003849129.1| - 0.049 13.9 0.0 0.14 12.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|304313982|ref|YP_003849129.1| - 0.065 12.0 0.0 0.1 11.3 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family Ras PF00071.17 gi|304313982|ref|YP_003849129.1| - 0.09 12.1 0.1 0.71 9.2 0.0 2.3 2 1 0 2 2 2 0 Ras family AAA_22 PF13401.1 gi|304313982|ref|YP_003849129.1| - 0.12 12.5 0.1 0.45 10.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|304313982|ref|YP_003849129.1| - 0.13 11.7 0.3 4 6.9 0.1 2.8 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KTI12 PF08433.5 gi|304313982|ref|YP_003849129.1| - 0.13 11.4 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|304313982|ref|YP_003849129.1| - 0.16 12.7 0.9 0.72 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain CBS PF00571.23 gi|304313983|ref|YP_003849130.1| - 1.6e-23 82.2 5.6 1.3e-14 53.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain STT3 PF02516.9 gi|304313984|ref|YP_003849131.1| - 3.8e-141 471.3 22.8 4.6e-141 471.0 15.8 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|304313984|ref|YP_003849131.1| - 6.8e-07 29.3 14.0 6.8e-07 29.3 9.7 3.1 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1673 PF07895.6 gi|304313984|ref|YP_003849131.1| - 0.82 9.1 3.7 3.9 6.9 0.0 3.4 2 2 2 4 4 4 0 Protein of unknown function (DUF1673) SPC12 PF06645.8 gi|304313984|ref|YP_003849131.1| - 5.3 6.9 13.7 5.6 6.8 0.5 4.1 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Topoisom_bac PF01131.15 gi|304313985|ref|YP_003849132.1| - 1.5e-111 373.0 0.0 1.9e-111 372.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|304313985|ref|YP_003849132.1| - 1.2e-29 101.5 18.3 3.8e-15 55.1 3.2 3.5 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|304313985|ref|YP_003849132.1| - 5.3e-10 39.1 0.0 1.3e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DNA_ligase_ZBD PF03119.11 gi|304313985|ref|YP_003849132.1| - 0.00082 19.0 1.6 0.12 12.0 0.0 3.3 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain SAP PF02037.22 gi|304313985|ref|YP_003849132.1| - 0.0026 17.2 1.0 0.11 12.0 0.1 2.6 2 0 0 2 2 2 1 SAP domain ADK_lid PF05191.9 gi|304313985|ref|YP_003849132.1| - 0.0058 16.2 3.6 1 9.0 0.1 3.8 3 0 0 3 3 3 1 Adenylate kinase, active site lid Auto_anti-p27 PF06677.7 gi|304313985|ref|YP_003849132.1| - 0.036 13.8 6.7 0.086 12.6 0.2 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|304313985|ref|YP_003849132.1| - 0.096 12.6 3.0 22 5.0 0.1 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-ISL3 PF14690.1 gi|304313985|ref|YP_003849132.1| - 0.19 11.8 9.7 11 6.1 0.1 3.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|304313985|ref|YP_003849132.1| - 2.3 8.0 9.8 1.7e+02 2.1 0.1 2.9 1 1 1 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|304313985|ref|YP_003849132.1| - 3.4 7.7 9.7 47 4.0 0.0 4.0 2 1 1 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|304313985|ref|YP_003849132.1| - 4.6 6.8 9.4 28 4.3 1.5 3.9 3 1 0 3 3 3 0 zinc-ribbon domain HAD PF12710.2 gi|304313986|ref|YP_003849133.1| - 7e-19 68.7 0.2 7e-19 68.7 0.2 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|304313986|ref|YP_003849133.1| - 2.2e-16 60.9 6.5 2e-15 57.8 0.1 3.1 2 2 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304313986|ref|YP_003849133.1| - 1.5e-09 37.8 0.1 1.5e-09 37.8 0.1 4.2 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|304313986|ref|YP_003849133.1| - 4.4e-08 32.5 3.0 1.5e-06 27.6 0.0 3.0 3 1 1 4 4 4 1 Putative Phosphatase HAD_2 PF13419.1 gi|304313986|ref|YP_003849133.1| - 8.4e-08 32.6 6.6 1.3e-06 28.7 0.0 4.0 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NPV_P10 PF05531.7 gi|304313986|ref|YP_003849133.1| - 0.44 10.8 7.1 2.2 8.6 1.6 4.3 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|304313986|ref|YP_003849133.1| - 5 6.8 25.3 0.28 10.9 2.6 3.7 3 1 0 4 4 4 0 Laminin Domain II AATF-Che1 PF13339.1 gi|304313986|ref|YP_003849133.1| - 6 7.0 29.8 0.2 11.8 3.3 3.5 1 1 1 3 3 3 0 Apoptosis antagonizing transcription factor OmpH PF03938.9 gi|304313986|ref|YP_003849133.1| - 7.6 6.4 39.2 0.07 13.0 7.5 3.4 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) TBP PF00352.16 gi|304313987|ref|YP_003849134.1| - 2.4e-68 225.5 0.0 2.3e-34 116.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|304313987|ref|YP_003849134.1| - 2.3e-05 24.3 0.0 0.29 11.2 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|304313987|ref|YP_003849134.1| - 0.1 11.9 0.3 0.94 8.8 0.1 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3596 PF12167.3 gi|304313988|ref|YP_003849135.1| - 0.0052 16.2 0.1 0.16 11.5 0.0 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF3596) CYTH PF01928.16 gi|304313989|ref|YP_003849136.1| - 1e-39 136.1 2.3 1.1e-39 135.9 1.6 1.0 1 0 0 1 1 1 1 CYTH domain HMGL-like PF00682.14 gi|304313990|ref|YP_003849137.1| - 7.6e-74 248.3 0.5 1.1e-73 247.8 0.3 1.2 1 0 0 1 1 1 1 HMGL-like HTH_22 PF13309.1 gi|304313990|ref|YP_003849137.1| - 0.00031 20.4 0.0 0.0014 18.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain Aconitase PF00330.15 gi|304313991|ref|YP_003849138.1| - 1.5e-86 290.7 1.0 3.2e-57 194.0 0.5 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF98 PF01947.11 gi|304313992|ref|YP_003849139.1| - 1.2e-36 125.7 0.0 1.5e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF98) UTRA PF07702.8 gi|304313992|ref|YP_003849139.1| - 1.1e-07 31.5 0.1 1.5e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.8 gi|304313992|ref|YP_003849139.1| - 0.0004 19.8 0.0 0.00049 19.5 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase XPG_I PF00867.13 gi|304313993|ref|YP_003849140.1| - 6e-27 93.5 0.0 1.2e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|304313993|ref|YP_003849140.1| - 1.2e-15 57.5 0.0 1.8e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|304313993|ref|YP_003849140.1| - 0.0036 17.5 0.2 0.0078 16.4 0.2 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold AAA_12 PF13087.1 gi|304313994|ref|YP_003849141.1| - 2.7e-55 186.8 0.0 5.1e-55 185.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|304313994|ref|YP_003849141.1| - 8.4e-54 182.6 0.1 2.6e-53 181.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|304313994|ref|YP_003849141.1| - 5.2e-12 45.7 0.3 2.1e-08 33.9 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_19 PF13245.1 gi|304313994|ref|YP_003849141.1| - 8.3e-11 41.4 0.1 4.8e-09 35.8 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|304313994|ref|YP_003849141.1| - 4.7e-06 26.2 0.0 0.54 9.7 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.9 gi|304313994|ref|YP_003849141.1| - 4.5e-05 23.1 0.7 0.0068 16.0 0.0 2.4 1 1 1 2 2 2 1 Helicase AAA_22 PF13401.1 gi|304313994|ref|YP_003849141.1| - 5.7e-05 23.2 0.3 0.00047 20.3 0.0 2.6 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|304313994|ref|YP_003849141.1| - 0.00026 21.0 0.2 0.00072 19.5 0.1 1.9 2 1 0 2 2 1 1 AAA ATPase domain PIF1 PF05970.9 gi|304313994|ref|YP_003849141.1| - 0.00027 20.0 0.0 0.0056 15.6 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase TrwB_AAD_bind PF10412.4 gi|304313994|ref|YP_003849141.1| - 0.00035 19.2 0.0 0.00067 18.3 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.10 gi|304313994|ref|YP_003849141.1| - 0.0021 17.8 0.1 0.01 15.7 0.1 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|304313994|ref|YP_003849141.1| - 0.0067 15.3 0.0 0.021 13.7 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein UvrD-helicase PF00580.16 gi|304313994|ref|YP_003849141.1| - 0.013 14.7 0.1 0.059 12.6 0.0 1.9 1 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain Phe_tRNA-synt_N PF02912.13 gi|304313994|ref|YP_003849141.1| - 0.028 14.1 0.2 0.065 12.9 0.1 1.6 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain PhoH PF02562.11 gi|304313994|ref|YP_003849141.1| - 0.055 12.6 0.0 2.3 7.3 0.0 2.5 2 1 0 2 2 2 0 PhoH-like protein Sigma54_activat PF00158.21 gi|304313994|ref|YP_003849141.1| - 0.06 12.8 0.0 0.24 10.8 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|304313994|ref|YP_003849141.1| - 0.061 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|304313994|ref|YP_003849141.1| - 0.065 12.9 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UvrD_C_2 PF13538.1 gi|304313994|ref|YP_003849141.1| - 0.07 13.2 0.0 0.5 10.5 0.0 2.3 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain DUF2119 PF09892.4 gi|304313995|ref|YP_003849142.1| - 2.3e-72 242.3 0.0 2.7e-72 242.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) AdoHcyase PF05221.12 gi|304313996|ref|YP_003849143.1| - 3e-61 206.7 0.0 3.3e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|304313996|ref|YP_003849143.1| - 3.1e-53 179.9 1.1 5.8e-53 179.0 0.7 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|304313996|ref|YP_003849143.1| - 6.6e-11 41.6 0.2 1.2e-10 40.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|304313996|ref|YP_003849143.1| - 3.1e-09 36.4 0.1 5.8e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|304313996|ref|YP_003849143.1| - 0.00074 19.4 0.3 0.0038 17.2 0.2 2.2 1 1 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|304313996|ref|YP_003849143.1| - 0.00095 19.5 0.2 0.0025 18.2 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|304313996|ref|YP_003849143.1| - 0.0018 17.8 0.8 0.0084 15.6 0.2 2.0 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|304313996|ref|YP_003849143.1| - 0.0087 16.0 0.6 0.018 15.0 0.2 1.6 2 0 0 2 2 2 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|304313996|ref|YP_003849143.1| - 0.013 14.5 1.0 0.045 12.8 0.7 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain zf-RNPHF PF08080.7 gi|304313996|ref|YP_003849143.1| - 0.17 11.4 0.6 0.33 10.4 0.4 1.4 1 0 0 1 1 1 0 RNPHF zinc finger GBS_Bsp-like PF08481.5 gi|304313997|ref|YP_003849144.1| - 0.0035 17.2 1.6 20 5.1 0.0 4.6 3 1 2 5 5 5 1 GBS Bsp-like repeat DUF3177 PF11375.3 gi|304313997|ref|YP_003849144.1| - 0.083 12.3 7.1 2.4 7.5 0.1 4.0 1 1 4 5 5 5 0 Protein of unknown function (DUF3177) Myotoxins PF00819.12 gi|304313997|ref|YP_003849144.1| - 1.1 9.3 4.2 12 6.0 0.1 3.9 3 1 2 5 5 5 0 Myotoxin WVELL PF14043.1 gi|304313997|ref|YP_003849144.1| - 1.1 8.8 6.2 6.4 6.4 0.0 4.0 5 0 0 5 5 5 0 WVELL protein AAA PF00004.24 gi|304313998|ref|YP_003849145.1| - 1.8e-100 332.3 0.1 7.7e-50 168.5 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|304313998|ref|YP_003849145.1| - 2.1e-31 107.6 0.3 7.9e-29 99.4 0.1 3.0 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|304313998|ref|YP_003849145.1| - 1e-17 64.5 0.0 6e-09 36.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|304313998|ref|YP_003849145.1| - 2.3e-16 59.1 1.5 5.2e-16 58.0 0.3 2.2 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|304313998|ref|YP_003849145.1| - 5.6e-14 52.5 0.4 1.7e-06 28.1 0.0 3.1 3 1 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|304313998|ref|YP_003849145.1| - 1.7e-13 50.8 0.1 8.8e-05 22.6 0.0 4.2 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|304313998|ref|YP_003849145.1| - 2.1e-13 49.8 0.1 1.5e-06 27.4 0.0 2.9 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|304313998|ref|YP_003849145.1| - 5e-12 45.8 0.0 1.1e-05 25.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|304313998|ref|YP_003849145.1| - 3.2e-11 43.2 0.0 3.3e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|304313998|ref|YP_003849145.1| - 7.4e-11 42.9 0.4 8.4e-05 23.3 0.0 3.3 3 2 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|304313998|ref|YP_003849145.1| - 1.1e-10 40.8 0.0 0.00016 20.5 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|304313998|ref|YP_003849145.1| - 2.4e-10 39.8 0.0 0.00046 19.3 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.9 gi|304313998|ref|YP_003849145.1| - 1.4e-09 37.8 1.3 0.0034 17.0 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|304313998|ref|YP_003849145.1| - 4.6e-08 32.7 2.0 0.0065 16.2 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|304313998|ref|YP_003849145.1| - 1.3e-07 31.2 0.6 0.015 14.7 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|304313998|ref|YP_003849145.1| - 2.5e-07 30.3 2.5 2.1 7.7 0.2 4.4 3 1 0 4 4 4 2 AAA domain IstB_IS21 PF01695.12 gi|304313998|ref|YP_003849145.1| - 1e-06 28.2 0.5 0.03 13.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_3 PF07726.6 gi|304313998|ref|YP_003849145.1| - 1.3e-06 28.0 0.0 0.041 13.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|304313998|ref|YP_003849145.1| - 1.6e-06 28.4 0.2 0.091 13.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|304313998|ref|YP_003849145.1| - 1.6e-06 27.4 0.3 0.029 13.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|304313998|ref|YP_003849145.1| - 1.6e-06 28.1 0.0 0.076 12.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|304313998|ref|YP_003849145.1| - 6e-06 26.0 0.0 0.057 13.0 0.0 3.3 2 2 1 3 3 2 2 Bacterial dnaA protein RNA_helicase PF00910.17 gi|304313998|ref|YP_003849145.1| - 7.1e-06 26.1 0.0 0.15 12.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|304313998|ref|YP_003849145.1| - 8.8e-06 25.0 2.5 0.14 11.2 0.0 3.9 4 1 1 5 5 3 2 KaiC NACHT PF05729.7 gi|304313998|ref|YP_003849145.1| - 2e-05 24.3 0.7 0.63 9.6 0.0 3.8 4 1 0 4 4 4 2 NACHT domain Viral_helicase1 PF01443.13 gi|304313998|ref|YP_003849145.1| - 2e-05 24.2 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase DUF815 PF05673.8 gi|304313998|ref|YP_003849145.1| - 2.2e-05 23.5 0.0 0.07 12.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|304313998|ref|YP_003849145.1| - 2.4e-05 23.4 0.0 0.14 11.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|304313998|ref|YP_003849145.1| - 2.6e-05 23.2 0.0 0.18 10.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|304313998|ref|YP_003849145.1| - 2.9e-05 23.4 0.4 0.17 11.1 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|304313998|ref|YP_003849145.1| - 4e-05 23.9 0.0 0.15 12.3 0.0 2.6 2 0 0 2 2 2 2 ABC transporter ResIII PF04851.10 gi|304313998|ref|YP_003849145.1| - 6.2e-05 22.9 0.0 0.067 13.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|304313998|ref|YP_003849145.1| - 0.00012 22.1 0.0 0.66 10.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|304313998|ref|YP_003849145.1| - 0.00038 20.2 1.9 1.8 8.2 0.0 4.1 3 2 2 5 5 4 1 NTPase AAA_11 PF13086.1 gi|304313998|ref|YP_003849145.1| - 0.0016 18.0 0.0 0.64 9.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|304313998|ref|YP_003849145.1| - 0.0016 18.0 0.0 0.47 10.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|304313998|ref|YP_003849145.1| - 0.0017 17.9 0.0 2.1 7.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|304313998|ref|YP_003849145.1| - 0.0018 17.7 0.0 0.91 8.9 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Parvo_NS1 PF01057.12 gi|304313998|ref|YP_003849145.1| - 0.0026 16.6 0.1 1.1 8.0 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 CPT PF07931.7 gi|304313998|ref|YP_003849145.1| - 0.0039 16.8 0.2 1.9 8.0 0.0 2.9 2 1 1 3 3 3 1 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|304313998|ref|YP_003849145.1| - 0.0047 16.8 0.0 2.2 8.1 0.0 2.4 2 0 0 2 2 2 1 Torsin UPF0079 PF02367.12 gi|304313998|ref|YP_003849145.1| - 0.0057 16.2 0.1 3.5 7.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AFG1_ATPase PF03969.11 gi|304313998|ref|YP_003849145.1| - 0.0082 14.9 0.0 2.1 7.0 0.0 2.7 3 0 0 3 3 3 1 AFG1-like ATPase SKI PF01202.17 gi|304313998|ref|YP_003849145.1| - 0.01 15.7 0.0 5.1 6.9 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase T2SE PF00437.15 gi|304313998|ref|YP_003849145.1| - 0.011 14.6 0.0 4.9 5.9 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.24 gi|304313998|ref|YP_003849145.1| - 0.015 14.7 1.8 20 4.6 0.0 3.8 2 2 2 4 4 4 0 DEAD/DEAH box helicase Cytidylate_kin2 PF13189.1 gi|304313998|ref|YP_003849145.1| - 0.031 14.1 0.1 4.7 7.0 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase-like family cobW PF02492.14 gi|304313998|ref|YP_003849145.1| - 0.035 13.5 0.3 6 6.2 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PDH PF02153.12 gi|304313999|ref|YP_003849146.1| - 5.6e-76 254.8 0.2 9.9e-76 254.0 0.1 1.4 2 0 0 2 2 2 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|304313999|ref|YP_003849146.1| - 1.2e-09 38.4 0.2 3.1e-09 37.1 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|304313999|ref|YP_003849146.1| - 3.8e-07 30.0 0.0 8.1e-06 25.7 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|304313999|ref|YP_003849146.1| - 4.3e-05 22.9 0.0 0.00012 21.5 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain adh_short PF00106.20 gi|304313999|ref|YP_003849146.1| - 0.0011 18.9 0.5 0.0066 16.3 0.2 2.1 2 0 0 2 2 2 1 short chain dehydrogenase B12-binding PF02310.14 gi|304313999|ref|YP_003849146.1| - 0.002 17.9 0.4 0.051 13.4 0.0 2.8 2 1 1 3 3 3 1 B12 binding domain adh_short_C2 PF13561.1 gi|304313999|ref|YP_003849146.1| - 0.0055 16.4 0.1 0.15 11.8 0.0 2.2 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_C PF03720.10 gi|304313999|ref|YP_003849146.1| - 0.0084 16.2 0.2 5.3 7.2 0.0 3.0 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDX-ACB PF03147.9 gi|304313999|ref|YP_003849146.1| - 0.011 15.9 0.0 0.038 14.1 0.0 2.0 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain NAD_Gly3P_dh_N PF01210.18 gi|304313999|ref|YP_003849146.1| - 0.011 15.4 0.1 0.029 14.0 0.1 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|304313999|ref|YP_003849146.1| - 0.032 14.3 0.4 0.24 11.5 0.1 2.2 1 1 0 2 2 2 0 CoA binding domain TPR_8 PF13181.1 gi|304313999|ref|YP_003849146.1| - 0.035 13.8 0.1 0.076 12.8 0.1 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat KR PF08659.5 gi|304313999|ref|YP_003849146.1| - 0.044 13.4 0.6 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 KR domain MnhB PF04039.8 gi|304314000|ref|YP_003849147.1| - 0.0034 17.4 12.6 0.0068 16.4 8.7 1.5 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter eRF1_1 PF03463.10 gi|304314001|ref|YP_003849148.1| - 3.6e-31 107.4 0.1 6.2e-31 106.7 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|304314001|ref|YP_003849148.1| - 2.8e-27 95.6 0.0 4.4e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|304314001|ref|YP_003849148.1| - 2.4e-23 82.5 0.9 7.8e-23 80.8 0.2 2.2 2 2 0 2 2 2 1 eRF1 domain 3 Radical_SAM PF04055.16 gi|304314002|ref|YP_003849149.1| - 6.1e-13 49.2 0.0 1.7e-12 47.8 0.0 1.9 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304314002|ref|YP_003849149.1| - 1.1e-08 35.2 0.1 1.1e-08 35.2 0.1 2.1 2 0 0 2 2 1 1 4Fe-4S single cluster domain Fer2_4 PF13510.1 gi|304314002|ref|YP_003849149.1| - 8.5e-08 31.9 0.3 1.9e-07 30.7 0.2 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_14 PF13394.1 gi|304314002|ref|YP_003849149.1| - 1.7e-07 31.2 0.0 1.7e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304314002|ref|YP_003849149.1| - 2e-06 27.1 20.2 4.3e-05 22.9 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314002|ref|YP_003849149.1| - 0.00064 19.4 3.3 0.00064 19.4 2.3 3.7 3 1 1 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314002|ref|YP_003849149.1| - 0.0014 18.8 1.7 0.0014 18.8 1.2 3.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314002|ref|YP_003849149.1| - 0.0084 16.8 1.6 0.0084 16.8 1.1 3.1 3 1 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314002|ref|YP_003849149.1| - 0.022 15.0 22.6 0.023 14.9 1.5 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain UBA_4 PF14555.1 gi|304314002|ref|YP_003849149.1| - 0.03 13.8 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Fer4_15 PF13459.1 gi|304314002|ref|YP_003849149.1| - 0.031 14.8 6.1 0.82 10.2 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|304314002|ref|YP_003849149.1| - 0.04 13.7 22.8 0.12 12.1 5.0 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain DUF348 PF03990.9 gi|304314002|ref|YP_003849149.1| - 0.047 13.2 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF348) Fer4_13 PF13370.1 gi|304314002|ref|YP_003849149.1| - 0.075 13.4 8.7 0.57 10.6 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer2_3 PF13085.1 gi|304314002|ref|YP_003849149.1| - 0.14 12.0 0.1 0.14 12.0 0.0 2.4 3 0 0 3 3 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.2 gi|304314002|ref|YP_003849149.1| - 0.57 10.6 23.6 5.1 7.5 9.5 3.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314002|ref|YP_003849149.1| - 1.1 9.3 29.3 0.11 12.5 5.4 3.3 2 1 1 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314002|ref|YP_003849149.1| - 1.7 8.7 21.6 0.18 11.8 3.4 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Photo_RC PF00124.14 gi|304314003|ref|YP_003849150.1| - 0.0017 17.4 0.8 0.0017 17.4 0.5 1.5 2 0 0 2 2 2 1 Photosynthetic reaction centre protein ABC1 PF03109.11 gi|304314004|ref|YP_003849151.1| - 1e-41 141.6 0.0 3e-41 140.1 0.0 1.8 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.20 gi|304314004|ref|YP_003849151.1| - 6.7e-06 25.4 0.0 1.5e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|304314004|ref|YP_003849151.1| - 3.5e-05 23.6 2.4 0.00012 21.8 0.4 2.5 1 1 1 3 3 3 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|304314004|ref|YP_003849151.1| - 4e-05 22.9 0.2 7.2e-05 22.1 0.2 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) RIO1 PF01163.17 gi|304314004|ref|YP_003849151.1| - 0.0056 16.0 0.0 0.024 14.0 0.0 2.1 1 1 0 2 2 2 1 RIO1 family HTH_Tnp_Tc3_1 PF11427.3 gi|304314004|ref|YP_003849151.1| - 0.2 11.3 0.8 0.66 9.6 0.6 1.8 1 0 0 1 1 1 0 Tc3 transposase Glyco_transf_28 PF03033.15 gi|304314005|ref|YP_003849152.1| - 8.3e-07 28.8 0.5 1.9e-06 27.6 0.4 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.1 gi|304314005|ref|YP_003849152.1| - 2.2e-06 27.8 0.2 6.7e-06 26.2 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|304314005|ref|YP_003849152.1| - 2.3e-06 27.8 0.2 2.1e-05 24.7 0.2 2.1 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|304314005|ref|YP_003849152.1| - 7.6e-06 25.7 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_3 PF13528.1 gi|304314005|ref|YP_003849152.1| - 7.9e-06 25.2 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 1 Mito_fiss_Elm1 PF06258.6 gi|304314005|ref|YP_003849152.1| - 0.0055 15.6 0.0 0.17 10.8 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial fission ELM1 Epimerase_2 PF02350.14 gi|304314005|ref|YP_003849152.1| - 0.013 14.2 0.1 0.15 10.7 0.0 2.3 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase AIRC PF00731.15 gi|304314005|ref|YP_003849152.1| - 0.036 13.3 0.3 0.23 10.7 0.0 2.2 2 0 0 2 2 2 0 AIR carboxylase Glyco_transf_4 PF13439.1 gi|304314005|ref|YP_003849152.1| - 0.11 12.2 0.0 0.34 10.5 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Pyr_redox_2 PF07992.9 gi|304314006|ref|YP_003849153.1| - 6.9e-37 127.2 0.4 1.1e-36 126.6 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|304314006|ref|YP_003849153.1| - 1.2e-20 73.7 1.0 7.1e-15 55.1 0.1 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|304314006|ref|YP_003849153.1| - 5.6e-13 49.4 0.0 1.2e-12 48.3 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|304314006|ref|YP_003849153.1| - 1.8e-06 27.0 9.6 0.0029 16.5 0.6 2.8 2 2 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|304314006|ref|YP_003849153.1| - 7.7e-06 26.1 0.1 0.033 14.4 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.19 gi|304314006|ref|YP_003849153.1| - 0.00011 21.2 8.6 0.00046 19.1 0.5 3.3 2 2 1 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|304314006|ref|YP_003849153.1| - 0.00016 20.8 0.2 0.00016 20.8 0.1 1.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|304314006|ref|YP_003849153.1| - 0.00078 18.3 0.1 0.00078 18.3 0.1 2.5 3 0 0 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|304314006|ref|YP_003849153.1| - 0.0012 18.4 0.8 0.27 10.7 0.1 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.9 gi|304314006|ref|YP_003849153.1| - 0.0017 16.9 0.5 0.0017 16.9 0.3 1.9 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|304314006|ref|YP_003849153.1| - 0.0039 17.1 0.2 0.0039 17.1 0.1 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|304314006|ref|YP_003849153.1| - 0.0064 15.6 0.7 0.0091 15.1 0.1 1.6 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|304314006|ref|YP_003849153.1| - 0.01 15.4 0.2 0.55 9.8 0.0 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|304314006|ref|YP_003849153.1| - 0.013 14.5 0.3 0.13 11.2 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.13 gi|304314006|ref|YP_003849153.1| - 0.019 14.9 0.8 1.1 9.2 0.0 2.9 2 1 1 3 3 3 0 TrkA-N domain Shikimate_DH PF01488.15 gi|304314006|ref|YP_003849153.1| - 0.029 14.4 0.2 4.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|304314006|ref|YP_003849153.1| - 0.033 14.5 0.0 0.4 10.9 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|304314006|ref|YP_003849153.1| - 0.059 12.5 0.2 0.56 9.3 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|304314006|ref|YP_003849153.1| - 0.067 13.6 0.6 7.3 7.0 0.0 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.9 gi|304314006|ref|YP_003849153.1| - 0.14 10.7 1.2 0.14 10.7 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase HupF_HypC PF01455.13 gi|304314007|ref|YP_003849154.1| - 2.9e-27 94.4 0.3 3.6e-27 94.1 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family DUF1654 PF07867.6 gi|304314007|ref|YP_003849154.1| - 0.045 13.1 1.1 0.093 12.1 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) ACT PF01842.20 gi|304314008|ref|YP_003849155.1| - 0.00019 20.8 0.0 0.00031 20.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain Chorismate_bind PF00425.13 gi|304314009|ref|YP_003849156.1| - 2.5e-91 305.5 0.0 3e-90 302.0 0.0 2.1 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|304314009|ref|YP_003849156.1| - 1.1e-22 80.5 0.1 3.3e-22 79.0 0.1 1.9 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|304314010|ref|YP_003849157.1| - 1.9e-48 164.4 0.0 2.1e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|304314010|ref|YP_003849157.1| - 6.6e-09 35.5 0.1 7.8e-08 32.0 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.16 gi|304314011|ref|YP_003849158.1| - 1.2e-81 273.5 0.0 1.3e-81 273.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|304314011|ref|YP_003849158.1| - 0.03 13.8 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.9 gi|304314011|ref|YP_003849158.1| - 0.057 12.4 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|304314011|ref|YP_003849158.1| - 0.076 11.8 0.1 0.19 10.5 0.1 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PRAI PF00697.17 gi|304314012|ref|YP_003849159.1| - 1.1e-42 145.8 0.0 1.2e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BATS PF06968.8 gi|304314012|ref|YP_003849159.1| - 0.079 12.8 0.0 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain PALP PF00291.20 gi|304314013|ref|YP_003849160.1| - 8.6e-37 126.9 0.2 1.1e-36 126.7 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Gly-zipper_OmpA PF13436.1 gi|304314013|ref|YP_003849160.1| - 2.6 7.7 5.5 0.25 10.9 0.2 1.9 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Trp_syntA PF00290.15 gi|304314014|ref|YP_003849161.1| - 8.7e-105 348.8 0.0 1.1e-104 348.6 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|304314014|ref|YP_003849161.1| - 5.1e-08 32.4 0.1 1.6e-07 30.8 0.0 2.0 3 0 0 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.12 gi|304314014|ref|YP_003849161.1| - 1.1e-06 28.1 1.2 0.00014 21.2 0.1 2.7 2 1 1 3 3 3 1 PcrB family PEP_mutase PF13714.1 gi|304314014|ref|YP_003849161.1| - 4.3e-05 22.8 1.2 0.012 14.8 0.1 2.7 2 1 0 3 3 3 2 Phosphoenolpyruvate phosphomutase NanE PF04131.9 gi|304314014|ref|YP_003849161.1| - 0.00058 18.8 0.0 0.0013 17.7 0.0 1.7 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|304314014|ref|YP_003849161.1| - 0.0023 17.6 0.0 0.67 9.5 0.0 2.9 2 1 0 3 3 3 1 HMGL-like ThiG PF05690.9 gi|304314014|ref|YP_003849161.1| - 0.0033 16.5 0.2 0.0064 15.5 0.1 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG BtpA PF03437.10 gi|304314014|ref|YP_003849161.1| - 0.0035 16.6 0.0 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 BtpA family IMPDH PF00478.20 gi|304314014|ref|YP_003849161.1| - 0.0076 15.1 0.1 0.17 10.7 0.0 2.2 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|304314014|ref|YP_003849161.1| - 0.014 14.5 0.1 0.067 12.2 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|304314014|ref|YP_003849161.1| - 0.02 13.9 0.1 0.15 11.1 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|304314014|ref|YP_003849161.1| - 0.025 13.7 0.3 0.2 10.7 0.2 2.2 1 1 0 1 1 1 0 Nitronate monooxygenase FMN_dh PF01070.13 gi|304314014|ref|YP_003849161.1| - 0.039 12.8 0.0 0.1 11.4 0.0 1.9 1 1 1 2 2 2 0 FMN-dependent dehydrogenase GDPD PF03009.12 gi|304314014|ref|YP_003849161.1| - 0.05 13.0 0.0 0.24 10.8 0.0 2.0 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family DUF561 PF04481.7 gi|304314014|ref|YP_003849161.1| - 0.055 12.4 0.0 0.53 9.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Dus PF01207.12 gi|304314014|ref|YP_003849161.1| - 0.06 12.1 0.1 0.47 9.2 0.0 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) DHDPS PF00701.17 gi|304314014|ref|YP_003849161.1| - 0.11 11.1 0.1 5.5 5.5 0.0 3.2 3 1 1 4 4 4 0 Dihydrodipicolinate synthetase family Glycos_transf_3 PF00591.16 gi|304314015|ref|YP_003849162.1| - 3.4e-96 321.5 1.6 5.6e-96 320.8 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|304314015|ref|YP_003849162.1| - 1.1e-24 85.8 1.4 2.1e-24 84.8 1.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain AAA_18 PF13238.1 gi|304314016|ref|YP_003849163.1| - 1.2e-14 54.7 0.0 1.8e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304314016|ref|YP_003849163.1| - 3.2e-11 44.1 0.0 3.9e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|304314016|ref|YP_003849163.1| - 1.1e-06 28.5 0.0 1.9e-06 27.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|304314016|ref|YP_003849163.1| - 3.4e-06 27.0 0.1 1.7e-05 24.7 0.1 1.9 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.12 gi|304314016|ref|YP_003849163.1| - 0.00014 21.3 0.1 0.096 12.0 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.1 gi|304314016|ref|YP_003849163.1| - 0.00014 21.8 0.0 0.0002 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|304314016|ref|YP_003849163.1| - 0.00019 21.6 0.1 0.00042 20.5 0.0 1.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|304314016|ref|YP_003849163.1| - 0.00023 21.1 0.0 0.00052 20.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|304314016|ref|YP_003849163.1| - 0.00056 20.0 0.0 0.0007 19.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|304314016|ref|YP_003849163.1| - 0.00056 19.8 0.1 0.0043 16.9 0.0 2.0 1 1 0 1 1 1 1 Adenylate kinase ABC_tran PF00005.22 gi|304314016|ref|YP_003849163.1| - 0.00078 19.7 0.0 0.00093 19.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|304314016|ref|YP_003849163.1| - 0.0023 17.6 0.0 0.0045 16.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Cytidylate_kin2 PF13189.1 gi|304314016|ref|YP_003849163.1| - 0.0024 17.7 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family RuvB_N PF05496.7 gi|304314016|ref|YP_003849163.1| - 0.0032 16.5 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|304314016|ref|YP_003849163.1| - 0.0041 16.8 0.1 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 NTPase MMR_HSR1 PF01926.18 gi|304314016|ref|YP_003849163.1| - 0.01 15.8 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|304314016|ref|YP_003849163.1| - 0.011 15.3 0.2 0.02 14.5 0.0 1.6 2 1 0 2 2 2 0 NACHT domain AAA_3 PF07726.6 gi|304314016|ref|YP_003849163.1| - 0.019 14.5 0.1 0.12 11.9 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|304314016|ref|YP_003849163.1| - 0.026 14.0 0.0 0.055 13.0 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|304314016|ref|YP_003849163.1| - 0.027 14.2 0.0 0.053 13.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|304314016|ref|YP_003849163.1| - 0.029 14.2 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|304314016|ref|YP_003849163.1| - 0.036 13.7 0.0 0.092 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|304314016|ref|YP_003849163.1| - 0.036 13.4 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|304314016|ref|YP_003849163.1| - 0.047 12.8 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|304314016|ref|YP_003849163.1| - 0.055 12.3 0.0 0.072 11.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|304314016|ref|YP_003849163.1| - 0.067 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|304314016|ref|YP_003849163.1| - 0.086 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ArgK PF03308.11 gi|304314016|ref|YP_003849163.1| - 0.13 11.0 0.0 0.28 9.9 0.0 1.5 1 0 0 1 1 1 0 ArgK protein Viral_helicase1 PF01443.13 gi|304314016|ref|YP_003849163.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF59 PF01883.14 gi|304314017|ref|YP_003849164.1| - 3.3e-17 62.2 0.9 4.2e-17 61.8 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 Cyanate_lyase PF02560.9 gi|304314017|ref|YP_003849164.1| - 0.091 12.3 0.2 0.25 10.8 0.0 1.7 1 1 1 2 2 2 0 Cyanate lyase C-terminal domain PUA PF01472.15 gi|304314018|ref|YP_003849165.1| - 3e-15 55.7 1.3 1.3e-14 53.6 0.9 2.1 1 1 1 2 2 2 1 PUA domain TGT_C2 PF14810.1 gi|304314018|ref|YP_003849165.1| - 1.3e-08 34.5 0.0 2.2e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Glu_synthase PF01645.12 gi|304314019|ref|YP_003849166.1| - 2.7e-120 401.6 0.4 3.3e-120 401.3 0.3 1.0 1 0 0 1 1 1 1 Conserved region in glutamate synthase DUF2769 PF10967.3 gi|304314019|ref|YP_003849166.1| - 2e-16 59.9 8.5 4e-16 59.0 5.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) FMN_dh PF01070.13 gi|304314019|ref|YP_003849166.1| - 7.3e-14 51.3 3.3 2e-09 36.7 1.5 2.9 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|304314019|ref|YP_003849166.1| - 2.8e-08 33.0 5.4 3.5e-08 32.7 2.5 1.8 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|304314019|ref|YP_003849166.1| - 8.9e-08 31.6 4.3 1.4e-07 30.9 3.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|304314019|ref|YP_003849166.1| - 0.00059 19.1 0.1 0.0017 17.7 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|304314019|ref|YP_003849166.1| - 0.024 13.5 0.3 0.04 12.8 0.2 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|304314019|ref|YP_003849166.1| - 0.072 12.3 2.7 0.14 11.3 0.3 2.5 3 1 1 4 4 4 0 PcrB family HD PF01966.17 gi|304314020|ref|YP_003849167.1| - 6.4e-18 64.9 0.2 9e-18 64.4 0.2 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|304314020|ref|YP_003849167.1| - 0.0067 15.7 0.0 0.31 10.3 0.0 2.1 1 1 1 2 2 2 2 HDOD domain DUF287 PF03384.9 gi|304314020|ref|YP_003849167.1| - 0.057 13.6 0.2 0.14 12.3 0.1 1.7 1 0 0 1 1 1 0 Drosophila protein of unknown function, DUF287 IF2_N PF04760.10 gi|304314021|ref|YP_003849168.1| - 0.032 13.8 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region TFIIE_alpha PF02002.12 gi|304314022|ref|YP_003849169.1| - 2e-29 101.1 0.3 2.3e-29 100.9 0.2 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|304314022|ref|YP_003849169.1| - 0.0028 17.3 0.0 0.0035 17.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Aldolase PF01081.14 gi|304314022|ref|YP_003849169.1| - 0.0061 15.7 0.1 0.0067 15.6 0.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase Rrf2 PF02082.15 gi|304314022|ref|YP_003849169.1| - 0.0077 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.6 gi|304314022|ref|YP_003849169.1| - 0.011 15.6 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|304314022|ref|YP_003849169.1| - 0.018 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2250 PF10007.4 gi|304314022|ref|YP_003849169.1| - 0.092 12.6 0.1 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Terpene_synth_C PF03936.11 gi|304314022|ref|YP_003849169.1| - 0.13 11.4 0.4 0.16 11.1 0.3 1.1 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain EAP30 PF04157.11 gi|304314022|ref|YP_003849169.1| - 0.14 11.3 0.1 0.17 11.0 0.1 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Trp_repressor PF01371.14 gi|304314022|ref|YP_003849169.1| - 0.15 12.0 0.3 0.2 11.6 0.2 1.4 1 0 0 1 1 1 0 Trp repressor protein F420_ligase PF01996.11 gi|304314023|ref|YP_003849170.1| - 2e-37 128.4 0.0 2.4e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase E3_binding PF02817.12 gi|304314023|ref|YP_003849170.1| - 0.036 13.6 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 e3 binding domain FeS PF04060.8 gi|304314024|ref|YP_003849171.1| - 5.9e-16 57.7 0.6 1.2e-15 56.7 0.4 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|304314025|ref|YP_003849172.1| - 1.2e-16 60.6 0.0 1.9e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|304314025|ref|YP_003849172.1| - 6.9e-06 25.0 0.0 0.087 11.5 0.0 2.2 2 0 0 2 2 2 2 ArgK protein Zeta_toxin PF06414.7 gi|304314025|ref|YP_003849172.1| - 0.00021 20.4 0.0 0.00038 19.6 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.17 gi|304314025|ref|YP_003849172.1| - 0.00024 20.6 0.0 0.00064 19.2 0.0 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|304314025|ref|YP_003849172.1| - 0.00079 19.1 0.1 0.0019 17.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|304314025|ref|YP_003849172.1| - 0.0009 19.2 0.0 0.0019 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|304314025|ref|YP_003849172.1| - 0.0011 19.2 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|304314025|ref|YP_003849172.1| - 0.0021 18.1 0.0 0.0036 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|304314025|ref|YP_003849172.1| - 0.0025 16.8 0.0 0.0035 16.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|304314025|ref|YP_003849172.1| - 0.0033 17.1 0.1 0.008 15.8 0.1 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|304314025|ref|YP_003849172.1| - 0.0035 16.5 0.0 0.0053 16.0 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 DUF917 PF06032.7 gi|304314025|ref|YP_003849172.1| - 0.0038 15.8 0.0 0.0052 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF917) CbiA PF01656.18 gi|304314025|ref|YP_003849172.1| - 0.013 14.9 1.0 0.053 12.9 0.6 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|304314025|ref|YP_003849172.1| - 0.02 14.5 0.0 0.045 13.4 0.0 1.6 2 0 0 2 2 1 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|304314025|ref|YP_003849172.1| - 0.021 13.4 0.0 0.03 12.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|304314025|ref|YP_003849172.1| - 0.033 13.8 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|304314025|ref|YP_003849172.1| - 0.038 13.5 0.8 0.11 11.9 0.1 2.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|304314025|ref|YP_003849172.1| - 0.039 13.4 0.3 0.067 12.6 0.2 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|304314025|ref|YP_003849172.1| - 0.039 12.8 0.1 0.071 12.0 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|304314025|ref|YP_003849172.1| - 0.043 13.7 0.1 0.075 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|304314025|ref|YP_003849172.1| - 0.043 14.0 0.1 0.085 13.0 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|304314025|ref|YP_003849172.1| - 0.051 13.0 0.2 2.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.13 gi|304314025|ref|YP_003849172.1| - 0.064 12.7 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|304314025|ref|YP_003849172.1| - 0.068 13.9 0.3 0.17 12.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|304314025|ref|YP_003849172.1| - 0.087 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 NTPase MipZ PF09140.6 gi|304314025|ref|YP_003849172.1| - 0.11 11.6 0.1 0.48 9.4 0.1 2.0 1 1 0 1 1 1 0 ATPase MipZ AAA_14 PF13173.1 gi|304314025|ref|YP_003849172.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304314025|ref|YP_003849172.1| - 0.13 11.6 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|304314026|ref|YP_003849173.1| - 9.7e-15 55.0 0.1 1.7e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314026|ref|YP_003849173.1| - 6.6e-06 26.2 0.3 0.11 12.4 0.0 2.8 2 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|304314026|ref|YP_003849173.1| - 0.00018 20.7 0.8 0.0052 16.0 0.5 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|304314026|ref|YP_003849173.1| - 0.00049 19.8 0.0 0.0013 18.4 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|304314026|ref|YP_003849173.1| - 0.0024 18.0 0.2 0.0087 16.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|304314026|ref|YP_003849173.1| - 0.0027 16.7 0.0 0.0042 16.1 0.0 1.7 1 1 0 1 1 1 1 KAP family P-loop domain AAA_29 PF13555.1 gi|304314026|ref|YP_003849173.1| - 0.0051 16.3 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|304314026|ref|YP_003849173.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|304314026|ref|YP_003849173.1| - 0.016 15.5 1.7 0.031 14.6 1.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|304314026|ref|YP_003849173.1| - 0.024 14.5 0.1 0.039 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|304314026|ref|YP_003849173.1| - 0.026 13.9 0.0 0.07 12.5 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|304314026|ref|YP_003849173.1| - 0.028 14.3 0.1 0.86 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|304314026|ref|YP_003849173.1| - 0.029 14.0 0.1 0.094 12.4 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Hom_end_hint PF05203.11 gi|304314026|ref|YP_003849173.1| - 0.033 13.9 0.4 2.2 7.9 0.0 2.1 1 1 0 2 2 2 0 Hom_end-associated Hint DUF258 PF03193.11 gi|304314026|ref|YP_003849173.1| - 0.038 13.1 0.0 0.12 11.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|304314026|ref|YP_003849173.1| - 0.04 12.6 0.2 0.12 11.0 0.0 1.8 2 0 0 2 2 2 0 PrkA AAA domain AAA_2 PF07724.9 gi|304314026|ref|YP_003849173.1| - 0.045 13.6 0.0 0.26 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|304314026|ref|YP_003849173.1| - 0.045 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|304314026|ref|YP_003849173.1| - 0.065 12.9 0.3 3.5 7.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|304314026|ref|YP_003849173.1| - 0.066 13.5 0.0 0.17 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|304314026|ref|YP_003849173.1| - 0.066 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|304314026|ref|YP_003849173.1| - 0.083 12.4 0.0 0.19 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|304314026|ref|YP_003849173.1| - 0.097 12.6 0.2 0.21 11.5 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|304314026|ref|YP_003849173.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ComA PF02679.10 gi|304314027|ref|YP_003849174.1| - 1.4e-93 312.4 0.0 1.5e-93 312.2 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) PK_C PF02887.11 gi|304314028|ref|YP_003849175.1| - 3.2e-22 78.2 0.2 4.1e-22 77.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Tubulin PF00091.20 gi|304314029|ref|YP_003849176.1| - 3.2e-38 131.7 0.2 2.4e-37 128.8 0.1 2.3 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|304314029|ref|YP_003849176.1| - 1.1e-35 121.5 1.5 1.1e-35 121.5 1.1 2.2 2 1 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|304314029|ref|YP_003849176.1| - 0.069 12.9 0.3 0.22 11.3 0.2 1.9 1 0 0 1 1 1 0 ThiF family DUF3236 PF11576.3 gi|304314029|ref|YP_003849176.1| - 0.083 12.2 2.2 0.16 11.3 0.0 2.5 3 1 1 4 4 4 0 Protein of unknown function (DUF3236) Tubulin_2 PF13809.1 gi|304314029|ref|YP_003849176.1| - 0.16 10.9 0.6 0.33 9.8 0.0 1.8 2 0 0 2 2 2 0 Tubulin like SecE PF00584.15 gi|304314030|ref|YP_003849177.1| - 3.7e-09 36.0 0.2 4.3e-09 35.8 0.1 1.0 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF3953 PF13129.1 gi|304314030|ref|YP_003849177.1| - 0.0064 16.1 0.7 0.0082 15.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3953) Colicin_D PF11429.3 gi|304314030|ref|YP_003849177.1| - 0.043 13.9 0.0 0.045 13.9 0.0 1.0 1 0 0 1 1 1 0 Colicin D Spt5-NGN PF03439.8 gi|304314031|ref|YP_003849178.1| - 4.2e-19 68.0 0.1 8.2e-19 67.1 0.1 1.5 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|304314031|ref|YP_003849178.1| - 2.2e-07 30.2 0.2 9.9e-07 28.2 0.0 2.1 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|304314031|ref|YP_003849178.1| - 6.1e-06 26.3 0.1 2.4e-05 24.4 0.0 2.1 2 1 0 2 2 2 1 Transcription termination factor nusG KH_5 PF13184.1 gi|304314031|ref|YP_003849178.1| - 0.16 11.7 3.8 0.21 11.4 0.2 2.7 2 1 1 3 3 3 0 NusA-like KH domain Ribosomal_L11_N PF03946.9 gi|304314032|ref|YP_003849179.1| - 2.6e-26 90.8 0.4 2.6e-26 90.8 0.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|304314032|ref|YP_003849179.1| - 3.7e-24 84.6 0.3 6.9e-24 83.7 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.16 gi|304314033|ref|YP_003849180.1| - 1.2e-50 171.9 1.9 1.4e-50 171.7 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DUF1892 PF08987.5 gi|304314033|ref|YP_003849180.1| - 0.066 13.2 0.2 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1892) DUF4355 PF14265.1 gi|304314033|ref|YP_003849180.1| - 2.1 8.3 7.9 0.3 11.0 0.3 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) Ribosomal_L10 PF00466.15 gi|304314034|ref|YP_003849181.1| - 2.1e-23 82.1 0.2 7.2e-23 80.4 0.1 1.9 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|304314034|ref|YP_003849181.1| - 0.00056 20.2 34.7 0.075 13.4 23.0 3.3 2 1 0 2 2 2 1 60s Acidic ribosomal protein RNA_pol_3_Rpc31 PF11705.3 gi|304314034|ref|YP_003849181.1| - 0.053 13.4 3.6 0.18 11.7 1.9 2.0 2 0 0 2 2 2 0 DNA-directed RNA polymerase III subunit Rpc31 DUF1697 PF08002.6 gi|304314034|ref|YP_003849181.1| - 2.6 8.0 5.0 0.9 9.5 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1697) Ribosomal_60s PF00428.14 gi|304314035|ref|YP_003849182.1| - 2e-18 66.5 30.1 2.3e-18 66.3 20.9 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF177 PF02620.12 gi|304314035|ref|YP_003849182.1| - 0.016 15.2 4.6 0.018 15.0 3.2 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 PepSY_2 PF13670.1 gi|304314035|ref|YP_003849182.1| - 0.031 14.1 12.7 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF4139 PF13598.1 gi|304314035|ref|YP_003849182.1| - 0.077 12.2 3.3 0.079 12.2 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) Sigma70_ner PF04546.8 gi|304314035|ref|YP_003849182.1| - 0.14 11.7 10.7 0.16 11.5 7.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region YicC_N PF03755.8 gi|304314035|ref|YP_003849182.1| - 0.17 11.8 4.8 0.21 11.5 3.3 1.2 1 0 0 1 1 1 0 YicC-like family, N-terminal region UBN_AB PF14075.1 gi|304314035|ref|YP_003849182.1| - 0.29 10.7 2.4 0.34 10.5 1.7 1.1 1 0 0 1 1 1 0 Ubinuclein conserved middle domain IFT43 PF15305.1 gi|304314035|ref|YP_003849182.1| - 0.73 9.8 8.3 1.5 8.8 5.7 1.6 1 1 0 1 1 1 0 Intraflagellar transport protein 43 DHHW PF14286.1 gi|304314035|ref|YP_003849182.1| - 0.91 8.7 2.7 1.1 8.5 1.9 1.1 1 0 0 1 1 1 0 DHHW protein DUF1631 PF07793.6 gi|304314035|ref|YP_003849182.1| - 0.95 7.5 7.9 1.1 7.3 5.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) Myc_N PF01056.13 gi|304314035|ref|YP_003849182.1| - 1.4 8.0 8.0 1.4 8.0 5.6 1.1 1 0 0 1 1 1 0 Myc amino-terminal region DUF2360 PF10152.4 gi|304314035|ref|YP_003849182.1| - 1.8 8.8 5.9 2 8.6 4.1 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Daxx PF03344.10 gi|304314035|ref|YP_003849182.1| - 1.8 6.9 6.4 1.8 6.9 4.5 1.1 1 0 0 1 1 1 0 Daxx Family Penicil_amidase PF01804.13 gi|304314035|ref|YP_003849182.1| - 2.2 7.1 5.4 2.5 7.0 3.7 1.0 1 0 0 1 1 1 0 Penicillin amidase AIF_C PF14721.1 gi|304314035|ref|YP_003849182.1| - 3.1 8.0 4.8 2.9 8.1 2.5 1.5 1 1 1 2 2 2 0 Apoptosis-inducing factor, mitochondrion-associated, C-term RNA_pol_3_Rpc31 PF11705.3 gi|304314035|ref|YP_003849182.1| - 3.1 7.6 6.7 3.5 7.5 4.7 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 DUF4611 PF15387.1 gi|304314035|ref|YP_003849182.1| - 9.7 6.4 9.3 13 5.9 6.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4611) tRNA-synt_2c PF01411.14 gi|304314036|ref|YP_003849183.1| - 1.5e-151 505.4 0.0 2e-151 505.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|304314036|ref|YP_003849183.1| - 9.5e-13 47.8 1.8 1.9e-12 46.8 0.7 2.0 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|304314036|ref|YP_003849183.1| - 3.4e-08 33.0 5.2 1e-07 31.5 3.6 1.8 1 0 0 1 1 1 1 DHHA1 domain Nop52 PF05997.7 gi|304314036|ref|YP_003849183.1| - 0.13 11.6 0.0 0.37 10.2 0.0 1.6 1 1 0 1 1 1 0 Nucleolar protein,Nop52 Glyco_hydro_31 PF01055.21 gi|304314036|ref|YP_003849183.1| - 0.21 10.3 0.0 0.41 9.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 31 DUF39 PF01837.11 gi|304314037|ref|YP_003849184.1| - 1.5e-112 375.6 0.0 1.7e-112 375.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_6 PF12837.2 gi|304314037|ref|YP_003849184.1| - 5.8e-07 29.1 11.4 0.0033 17.2 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|304314037|ref|YP_003849184.1| - 1.7e-06 27.3 11.8 3.8e-06 26.2 1.3 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314037|ref|YP_003849184.1| - 2.7e-06 27.6 7.4 0.0025 18.1 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314037|ref|YP_003849184.1| - 3.8e-05 23.8 7.1 0.0088 16.2 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314037|ref|YP_003849184.1| - 7.7e-05 22.4 10.3 0.00074 19.2 0.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314037|ref|YP_003849184.1| - 0.00022 20.9 11.2 0.0025 17.6 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314037|ref|YP_003849184.1| - 0.0014 18.5 3.1 0.013 15.5 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314037|ref|YP_003849184.1| - 0.0033 17.6 2.6 0.0033 17.6 1.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314037|ref|YP_003849184.1| - 0.074 13.4 9.1 0.12 12.7 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314037|ref|YP_003849184.1| - 0.087 13.5 0.6 0.087 13.5 0.4 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|304314037|ref|YP_003849184.1| - 0.25 11.1 9.3 5.2 7.0 6.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314037|ref|YP_003849184.1| - 0.63 10.6 10.6 0.14 12.7 0.7 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|304314037|ref|YP_003849184.1| - 1.7 9.0 11.5 2.6 8.4 0.9 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain ThiI PF02568.9 gi|304314038|ref|YP_003849185.1| - 1.4e-77 259.5 0.0 1.9e-77 259.2 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|304314038|ref|YP_003849185.1| - 2.4e-23 82.6 1.2 8e-23 80.9 0.1 2.3 3 0 0 3 3 3 1 THUMP domain QueC PF06508.8 gi|304314038|ref|YP_003849185.1| - 3e-06 26.6 0.2 0.0021 17.3 0.0 2.7 3 1 0 3 3 3 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|304314038|ref|YP_003849185.1| - 2.4e-05 23.0 0.0 3.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|304314038|ref|YP_003849185.1| - 0.0013 18.3 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|304314038|ref|YP_003849185.1| - 0.042 12.7 0.0 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 NAD synthase FBPase_3 PF01950.11 gi|304314039|ref|YP_003849186.1| - 9.7e-191 633.4 0.0 1.1e-190 633.3 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF434 PF04256.7 gi|304314040|ref|YP_003849187.1| - 5e-23 80.2 4.0 8.4e-23 79.5 2.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) PhoU_div PF01865.11 gi|304314041|ref|YP_003849188.1| - 4.1e-71 238.5 9.7 4.6e-71 238.3 6.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|304314041|ref|YP_003849188.1| - 3e-07 30.7 10.5 8.9e-05 22.8 3.1 2.2 2 0 0 2 2 2 2 PhoU domain Snf7 PF03357.16 gi|304314041|ref|YP_003849188.1| - 0.31 10.4 3.2 0.23 10.8 0.6 1.9 2 0 0 2 2 2 0 Snf7 ArdA PF07275.6 gi|304314041|ref|YP_003849188.1| - 0.89 9.7 3.8 2.3 8.4 0.2 2.3 1 1 1 2 2 2 0 Antirestriction protein (ArdA) DUF357 PF04010.8 gi|304314042|ref|YP_003849189.1| - 2.9e-20 71.7 0.3 3.2e-20 71.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CDP-OH_P_transf PF01066.16 gi|304314043|ref|YP_003849190.1| - 1.7e-12 47.4 7.1 3.5e-12 46.5 4.9 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Sua5_yciO_yrdC PF01300.13 gi|304314044|ref|YP_003849191.1| - 1e-47 161.7 0.0 1.2e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Rad51 PF08423.6 gi|304314045|ref|YP_003849192.1| - 1.6e-24 86.2 0.0 2e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|304314045|ref|YP_003849192.1| - 2.8e-15 56.2 0.1 3.3e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|304314045|ref|YP_003849192.1| - 2.6e-12 46.5 0.0 3.6e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|304314045|ref|YP_003849192.1| - 1.3e-07 30.9 0.0 1.4e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 KaiC Zot PF05707.7 gi|304314045|ref|YP_003849192.1| - 1.3e-06 28.0 0.0 1.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.1 gi|304314045|ref|YP_003849192.1| - 4e-05 23.2 0.0 5.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|304314045|ref|YP_003849192.1| - 0.00032 20.8 0.0 0.00046 20.3 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|304314045|ref|YP_003849192.1| - 0.0007 19.0 0.1 0.0013 18.2 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|304314045|ref|YP_003849192.1| - 0.0011 18.6 0.0 0.0014 18.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|304314045|ref|YP_003849192.1| - 0.0044 17.1 0.0 0.0061 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|304314045|ref|YP_003849192.1| - 0.01 15.2 0.0 0.039 13.3 0.0 1.9 2 1 0 2 2 2 0 IstB-like ATP binding protein KTI12 PF08433.5 gi|304314045|ref|YP_003849192.1| - 0.017 14.3 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|304314045|ref|YP_003849192.1| - 0.032 13.1 0.0 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_31 PF13614.1 gi|304314045|ref|YP_003849192.1| - 0.046 13.6 0.0 0.18 11.6 0.0 2.0 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|304314045|ref|YP_003849192.1| - 0.051 13.8 0.0 0.08 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|304314045|ref|YP_003849192.1| - 0.11 11.3 0.2 1 8.1 0.0 2.1 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain TrwB_AAD_bind PF10412.4 gi|304314045|ref|YP_003849192.1| - 0.12 10.9 0.1 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Aminotran_1_2 PF00155.16 gi|304314046|ref|YP_003849193.1| - 1.5e-36 126.1 0.0 1.7e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|304314046|ref|YP_003849193.1| - 5.2e-05 22.1 0.0 0.15 10.7 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Alliinase_C PF04864.8 gi|304314046|ref|YP_003849193.1| - 0.00042 19.0 0.1 0.0025 16.5 0.1 1.9 1 1 1 2 2 2 1 Allinase Beta_elim_lyase PF01212.16 gi|304314046|ref|YP_003849193.1| - 0.0081 15.3 0.0 0.022 13.9 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase ABC_tran PF00005.22 gi|304314047|ref|YP_003849194.1| - 2.3e-40 138.0 0.0 1.6e-19 70.5 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|304314047|ref|YP_003849194.1| - 1.1e-15 58.3 6.5 0.003 17.5 0.6 4.3 2 2 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|304314047|ref|YP_003849194.1| - 8.5e-13 48.0 2.4 9.6e-06 24.9 0.4 3.1 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|304314047|ref|YP_003849194.1| - 7.3e-11 41.4 2.3 1.5e-10 40.4 1.6 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA PF00004.24 gi|304314047|ref|YP_003849194.1| - 7.1e-07 29.4 0.1 0.096 12.8 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Fer4 PF00037.22 gi|304314047|ref|YP_003849194.1| - 1.2e-06 27.8 1.1 1.2e-06 27.8 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|304314047|ref|YP_003849194.1| - 4.6e-06 27.4 0.2 0.038 14.7 0.0 2.8 2 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|304314047|ref|YP_003849194.1| - 1.6e-05 24.1 0.2 0.022 13.9 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|304314047|ref|YP_003849194.1| - 7.1e-05 22.0 0.0 0.21 10.5 0.0 3.7 3 1 0 4 4 4 1 AAA ATPase domain Fer4_7 PF12838.2 gi|304314047|ref|YP_003849194.1| - 0.00012 22.3 8.7 0.00024 21.3 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|304314047|ref|YP_003849194.1| - 0.00012 22.1 0.0 0.1 12.7 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304314047|ref|YP_003849194.1| - 0.00013 22.2 0.1 0.092 13.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|304314047|ref|YP_003849194.1| - 0.00018 21.9 0.2 0.2 11.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|304314047|ref|YP_003849194.1| - 0.00037 20.3 0.0 1.4 8.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain SbcCD_C PF13558.1 gi|304314047|ref|YP_003849194.1| - 0.00055 19.8 1.0 2.4 8.1 0.1 3.5 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|304314047|ref|YP_003849194.1| - 0.00072 19.0 0.1 0.07 12.6 0.0 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fer4_21 PF14697.1 gi|304314047|ref|YP_003849194.1| - 0.00098 18.9 8.0 0.0019 17.9 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|304314047|ref|YP_003849194.1| - 0.0012 18.9 0.8 0.75 9.7 0.0 3.1 3 1 0 3 3 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|304314047|ref|YP_003849194.1| - 0.0012 17.9 0.1 1.3 8.0 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_13 PF13166.1 gi|304314047|ref|YP_003849194.1| - 0.0013 17.3 0.1 0.021 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_6 PF12837.2 gi|304314047|ref|YP_003849194.1| - 0.0013 18.4 0.8 0.0013 18.4 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain RNA_helicase PF00910.17 gi|304314047|ref|YP_003849194.1| - 0.0017 18.5 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Fer4_9 PF13187.1 gi|304314047|ref|YP_003849194.1| - 0.002 18.3 10.1 0.0039 17.4 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|304314047|ref|YP_003849194.1| - 0.0023 17.3 0.5 3 7.1 0.0 3.1 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|304314047|ref|YP_003849194.1| - 0.0051 16.5 0.2 2.2 7.9 0.0 2.7 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|304314047|ref|YP_003849194.1| - 0.0088 15.9 0.1 3.4 7.5 0.0 3.3 3 1 0 3 3 2 0 AAA domain Fer4_10 PF13237.1 gi|304314047|ref|YP_003849194.1| - 0.011 15.5 11.3 0.018 14.8 1.3 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain NACHT PF05729.7 gi|304314047|ref|YP_003849194.1| - 0.013 15.2 0.0 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Fer4_2 PF12797.2 gi|304314047|ref|YP_003849194.1| - 0.013 15.4 1.9 0.013 15.4 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain UPF0079 PF02367.12 gi|304314047|ref|YP_003849194.1| - 0.014 15.0 0.0 4.9 6.7 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|304314047|ref|YP_003849194.1| - 0.015 15.8 0.0 7.2 7.1 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein Rad17 PF03215.10 gi|304314047|ref|YP_003849194.1| - 0.02 13.5 0.0 0.12 10.9 0.0 1.9 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|304314047|ref|YP_003849194.1| - 0.034 12.9 0.1 2 7.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|304314047|ref|YP_003849194.1| - 0.047 13.4 0.2 4.8 6.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|304314047|ref|YP_003849194.1| - 0.053 13.4 0.0 9.9 6.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|304314047|ref|YP_003849194.1| - 0.07 12.7 0.3 2.2 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain Fer4_16 PF13484.1 gi|304314047|ref|YP_003849194.1| - 0.083 13.6 9.1 0.093 13.4 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain NTPase_1 PF03266.10 gi|304314047|ref|YP_003849194.1| - 0.084 12.5 0.3 8.1 6.1 0.0 3.4 3 0 0 3 3 2 0 NTPase MMR_HSR1 PF01926.18 gi|304314047|ref|YP_003849194.1| - 0.087 12.7 0.2 2 8.3 0.1 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase PhoH PF02562.11 gi|304314047|ref|YP_003849194.1| - 0.11 11.6 0.4 1.4 8.0 0.0 2.8 3 0 0 3 3 2 0 PhoH-like protein IstB_IS21 PF01695.12 gi|304314047|ref|YP_003849194.1| - 0.14 11.5 0.1 16 4.8 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein VirE PF05272.6 gi|304314047|ref|YP_003849194.1| - 0.15 11.4 0.0 6.3 6.2 0.0 2.5 2 0 0 2 2 2 0 Virulence-associated protein E SRP54 PF00448.17 gi|304314047|ref|YP_003849194.1| - 0.15 11.4 0.1 8.1 5.8 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Fer4_8 PF13183.1 gi|304314047|ref|YP_003849194.1| - 0.37 10.8 8.1 0.76 9.8 5.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314047|ref|YP_003849194.1| - 2.4 8.6 9.6 53 4.3 6.7 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314047|ref|YP_003849194.1| - 3.7 8.1 12.4 0.98 9.9 2.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314047|ref|YP_003849194.1| - 5 7.7 10.9 1.3e+03 0.0 7.5 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain CBFD_NFYB_HMF PF00808.18 gi|304314048|ref|YP_003849195.1| - 1.1e-22 79.8 0.7 1.2e-22 79.6 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|304314048|ref|YP_003849195.1| - 1.2e-13 50.9 0.1 1.4e-13 50.7 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|304314048|ref|YP_003849195.1| - 9.4e-07 28.6 0.4 9.6e-07 28.6 0.3 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.8 gi|304314048|ref|YP_003849195.1| - 3.9e-06 27.0 0.2 4.4e-06 26.8 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-S PF15630.1 gi|304314048|ref|YP_003849195.1| - 3.7e-05 23.8 0.0 3.9e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|304314048|ref|YP_003849195.1| - 0.00027 20.6 0.0 0.0003 20.4 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T PF15511.1 gi|304314048|ref|YP_003849195.1| - 0.0054 16.0 0.5 0.0058 15.9 0.4 1.2 1 1 0 1 1 1 1 Centromere kinetochore component CENP-T TFIID-31kDa PF02291.10 gi|304314048|ref|YP_003849195.1| - 0.047 13.4 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit PTH2 PF01981.11 gi|304314049|ref|YP_003849196.1| - 5e-42 142.2 0.0 5.5e-42 142.1 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 AA_kinase PF00696.23 gi|304314050|ref|YP_003849197.1| - 4.4e-19 68.9 0.1 2.4e-18 66.5 0.0 1.8 1 1 0 1 1 1 1 Amino acid kinase family zinc_ribbon_2 PF13240.1 gi|304314051|ref|YP_003849198.1| - 0.0018 17.7 1.4 0.0018 17.7 0.9 3.2 2 2 1 3 3 3 1 zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|304314051|ref|YP_003849198.1| - 0.076 12.6 4.4 0.076 12.6 3.0 2.3 3 0 0 3 3 3 0 Zinc knuckle HypA PF01155.14 gi|304314051|ref|YP_003849198.1| - 0.25 11.0 8.6 0.66 9.6 5.9 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family tRNA-synt_1g PF09334.6 gi|304314051|ref|YP_003849198.1| - 0.31 9.6 2.3 0.31 9.6 1.6 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF4475 PF14753.1 gi|304314051|ref|YP_003849198.1| - 0.42 10.0 7.7 0.53 9.7 5.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4475) DUF2072 PF09845.4 gi|304314051|ref|YP_003849198.1| - 0.42 10.5 6.1 0.62 9.9 4.2 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) NinF PF05810.7 gi|304314051|ref|YP_003849198.1| - 0.73 9.6 4.1 1 9.1 2.6 1.4 1 1 0 1 1 1 0 NinF protein zf-Mss51 PF13824.1 gi|304314051|ref|YP_003849198.1| - 0.81 9.5 7.9 0.55 10.1 4.4 1.7 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 C1_4 PF07975.7 gi|304314051|ref|YP_003849198.1| - 1.3 9.1 11.3 5.9 6.9 7.8 2.2 1 1 0 1 1 1 0 TFIIH C1-like domain DUF1451 PF07295.6 gi|304314051|ref|YP_003849198.1| - 1.4 8.6 6.3 2.1 8.1 4.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) PolC_DP2 PF03833.8 gi|304314051|ref|YP_003849198.1| - 1.6 6.2 7.1 1.6 6.3 4.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1610 PF07754.6 gi|304314051|ref|YP_003849198.1| - 1.8 8.7 20.6 0.13 12.4 3.2 3.7 2 2 0 2 2 2 0 Domain of unknown function (DUF1610) zf-MYND PF01753.13 gi|304314051|ref|YP_003849198.1| - 2.6 7.9 9.6 7.7 6.4 4.7 2.3 1 1 0 1 1 1 0 MYND finger ZZ PF00569.12 gi|304314051|ref|YP_003849198.1| - 3.7 7.1 12.0 3.1 7.4 4.1 2.7 1 1 1 2 2 2 0 Zinc finger, ZZ type zf-B_box PF00643.19 gi|304314051|ref|YP_003849198.1| - 4 7.4 10.8 0.47 10.3 1.3 2.3 1 1 0 1 1 1 0 B-box zinc finger DUF2039 PF10217.4 gi|304314051|ref|YP_003849198.1| - 4.1 7.4 8.5 4.8 7.2 5.9 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DZR PF12773.2 gi|304314051|ref|YP_003849198.1| - 4.8 7.0 12.3 57 3.6 8.5 2.4 1 1 0 1 1 1 0 Double zinc ribbon DUF3268 PF11672.3 gi|304314051|ref|YP_003849198.1| - 6.3 6.9 7.8 7.5 6.6 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) C1_1 PF00130.17 gi|304314051|ref|YP_003849198.1| - 7 6.4 12.3 1e+02 2.7 8.5 2.1 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Tnp_zf-ribbon_2 PF13842.1 gi|304314051|ref|YP_003849198.1| - 8 6.9 15.0 57 4.2 10.4 2.3 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-CHY PF05495.7 gi|304314051|ref|YP_003849198.1| - 8.2 6.6 13.3 9.5 6.4 4.7 2.2 1 1 1 2 2 2 0 CHY zinc finger EF1_GNE PF00736.14 gi|304314052|ref|YP_003849199.1| - 3e-24 84.5 0.4 3.2e-24 84.4 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TctA PF01970.11 gi|304314053|ref|YP_003849200.1| - 3.6e-57 193.6 46.3 4.4e-57 193.3 32.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Methyltransf_26 PF13659.1 gi|304314054|ref|YP_003849201.1| - 6e-11 42.3 0.0 1.9e-10 40.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|304314054|ref|YP_003849201.1| - 3e-06 26.7 0.0 4.9e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.11 gi|304314054|ref|YP_003849201.1| - 3.4e-06 26.2 0.0 5.7e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|304314054|ref|YP_003849201.1| - 1.2e-05 24.9 0.0 1.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|304314054|ref|YP_003849201.1| - 1.9e-05 24.1 0.0 4.7e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|304314054|ref|YP_003849201.1| - 3e-05 23.2 0.0 4.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|304314054|ref|YP_003849201.1| - 0.0046 17.2 0.0 0.0089 16.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304314054|ref|YP_003849201.1| - 0.0063 17.0 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain T2SE PF00437.15 gi|304314055|ref|YP_003849202.1| - 6.6e-64 215.4 0.0 1.2e-63 214.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|304314055|ref|YP_003849202.1| - 4.4e-05 23.0 1.1 0.0018 17.7 0.0 3.1 3 0 0 3 3 3 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|304314055|ref|YP_003849202.1| - 0.0015 18.8 0.0 0.0041 17.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|304314055|ref|YP_003849202.1| - 0.0057 15.7 0.0 0.018 14.1 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_19 PF13245.1 gi|304314055|ref|YP_003849202.1| - 0.011 15.5 0.1 0.028 14.1 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|304314055|ref|YP_003849202.1| - 0.029 13.9 0.1 0.067 12.7 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|304314055|ref|YP_003849202.1| - 0.033 14.1 0.5 2.2 8.2 0.0 2.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|304314055|ref|YP_003849202.1| - 0.099 12.0 1.0 0.19 11.1 0.0 2.0 2 1 0 2 2 2 0 AAA-like domain T2SF PF00482.18 gi|304314056|ref|YP_003849203.1| - 6.7e-21 74.4 1.2 6.7e-21 74.4 0.9 3.9 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|304314056|ref|YP_003849203.1| - 0.00021 20.0 0.9 0.021 13.4 0.3 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) DUF1469 PF07332.6 gi|304314056|ref|YP_003849203.1| - 0.13 11.9 5.2 2.1 8.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF805 PF05656.9 gi|304314056|ref|YP_003849203.1| - 1.1 9.0 11.8 5.2 6.9 4.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF805) PRA1 PF03208.14 gi|304314056|ref|YP_003849203.1| - 1.7 7.9 6.0 6.7 6.0 0.9 2.2 2 0 0 2 2 2 0 PRA1 family protein DUF3784 PF12650.2 gi|304314056|ref|YP_003849203.1| - 1.8 8.5 13.0 0.16 11.9 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Tic20 PF09685.5 gi|304314056|ref|YP_003849203.1| - 3 7.8 11.7 0.8 9.7 0.1 2.4 2 0 0 2 2 2 0 Tic20-like protein ABC_tran PF00005.22 gi|304314057|ref|YP_003849204.1| - 1.1e-33 116.4 0.0 1.7e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314057|ref|YP_003849204.1| - 1.2e-18 68.0 2.4 1e-13 51.9 0.3 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|304314057|ref|YP_003849204.1| - 8.8e-09 34.9 0.1 1.1e-07 31.3 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|304314057|ref|YP_003849204.1| - 6.4e-07 28.7 0.2 2.4e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|304314057|ref|YP_003849204.1| - 0.00048 19.6 0.0 0.00087 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|304314057|ref|YP_003849204.1| - 0.0012 18.6 0.1 0.014 15.2 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|304314057|ref|YP_003849204.1| - 0.0034 16.1 0.0 0.0069 15.2 0.0 1.5 1 0 0 1 1 1 1 ArgK protein AAA_23 PF13476.1 gi|304314057|ref|YP_003849204.1| - 0.018 15.3 0.2 0.031 14.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|304314057|ref|YP_003849204.1| - 0.039 12.4 0.1 5.5 5.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|304314057|ref|YP_003849204.1| - 0.064 13.5 0.2 11 6.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|304314057|ref|YP_003849204.1| - 0.065 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|304314057|ref|YP_003849204.1| - 0.086 11.9 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|304314057|ref|YP_003849204.1| - 0.1 12.6 0.1 0.16 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|304314057|ref|YP_003849204.1| - 0.11 13.3 0.7 0.39 11.5 0.2 2.3 2 2 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|304314057|ref|YP_003849204.1| - 0.11 11.8 0.0 0.54 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|304314057|ref|YP_003849204.1| - 0.14 11.6 0.1 0.67 9.3 0.1 2.0 1 1 0 1 1 1 0 AAA-like domain CbiQ PF02361.11 gi|304314058|ref|YP_003849205.1| - 2.5e-53 180.9 8.2 3.5e-53 180.4 5.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein DUF4181 PF13789.1 gi|304314058|ref|YP_003849205.1| - 0.035 14.0 4.6 0.045 13.6 1.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) PDGLE PF13190.1 gi|304314059|ref|YP_003849206.1| - 1.3e-18 66.4 0.4 1.7e-18 66.1 0.3 1.2 1 0 0 1 1 1 1 PDGLE domain OppC_N PF12911.2 gi|304314059|ref|YP_003849206.1| - 0.02 14.2 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C CbiM PF01891.11 gi|304314060|ref|YP_003849207.1| - 2.2e-61 207.0 21.5 2.5e-61 206.8 14.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|304314060|ref|YP_003849207.1| - 3.4 7.5 26.1 1.3 8.8 16.5 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3816) Prismane PF03063.15 gi|304314061|ref|YP_003849208.1| - 6e-100 335.0 4.5 6.4e-83 278.8 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.1 gi|304314061|ref|YP_003849208.1| - 1.3e-07 31.7 8.6 1.3e-07 31.7 6.0 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314061|ref|YP_003849208.1| - 9.1e-07 28.8 9.3 9.1e-07 28.8 6.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314061|ref|YP_003849208.1| - 1.9e-06 27.5 9.5 1.9e-06 27.5 6.6 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314061|ref|YP_003849208.1| - 2.4e-05 24.5 13.9 0.0019 18.4 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314061|ref|YP_003849208.1| - 2.5e-05 24.5 8.4 2.5e-05 24.5 5.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314061|ref|YP_003849208.1| - 3.7e-05 24.0 7.6 0.037 14.4 0.0 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314061|ref|YP_003849208.1| - 0.0035 16.8 1.9 0.0035 16.8 1.3 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314061|ref|YP_003849208.1| - 0.026 15.2 12.9 0.14 12.8 0.1 4.0 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain CO_dh PF02552.11 gi|304314062|ref|YP_003849209.1| - 8.7e-64 214.1 0.0 9.6e-64 213.9 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|304314062|ref|YP_003849209.1| - 7.8e-07 28.9 0.0 1.7e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.10 gi|304314063|ref|YP_003849210.1| - 1.7e-194 646.0 0.1 2.1e-194 645.7 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DNA_pol3_a_NII PF11490.3 gi|304314063|ref|YP_003849210.1| - 2 8.0 5.9 2.1 7.9 0.0 2.9 2 1 1 3 3 3 0 DNA polymerase III polC-type N-terminus II CbiA PF01656.18 gi|304314064|ref|YP_003849211.1| - 7.8e-43 146.1 0.1 9.6e-43 145.8 0.1 1.0 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|304314064|ref|YP_003849211.1| - 4.5e-09 35.7 3.8 1.4e-08 34.1 1.6 2.4 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|304314064|ref|YP_003849211.1| - 9.5e-09 35.3 0.1 0.0047 16.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain YhjQ PF06564.7 gi|304314064|ref|YP_003849211.1| - 4.2e-07 29.5 0.0 9.8e-07 28.3 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|304314064|ref|YP_003849211.1| - 3.9e-06 26.1 1.2 0.018 14.1 0.2 2.2 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|304314064|ref|YP_003849211.1| - 4.2e-06 26.1 0.0 0.00056 19.1 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.1 gi|304314064|ref|YP_003849211.1| - 0.0026 17.7 0.0 0.0031 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|304314064|ref|YP_003849211.1| - 0.0035 16.7 0.2 0.011 15.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|304314064|ref|YP_003849211.1| - 0.0056 16.3 3.2 1.2 8.6 0.1 2.4 2 1 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|304314064|ref|YP_003849211.1| - 0.0077 15.6 0.4 1.7 8.0 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ParA PF10609.4 gi|304314064|ref|YP_003849211.1| - 0.012 15.5 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 ParA/MinD ATPase like MobB PF03205.9 gi|304314064|ref|YP_003849211.1| - 0.012 15.2 0.1 0.04 13.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|304314064|ref|YP_003849211.1| - 0.016 14.6 0.2 0.04 13.3 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|304314064|ref|YP_003849211.1| - 0.032 13.8 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|304314064|ref|YP_003849211.1| - 0.038 13.5 0.0 0.094 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|304314064|ref|YP_003849211.1| - 0.042 12.9 0.1 0.79 8.7 0.0 2.2 2 0 0 2 2 2 0 VirC1 protein AAA_22 PF13401.1 gi|304314064|ref|YP_003849211.1| - 0.052 13.6 0.1 0.16 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|304314064|ref|YP_003849211.1| - 0.062 14.1 2.9 2 9.2 2.0 2.4 1 1 0 1 1 1 0 AAA domain Toprim_4 PF13662.1 gi|304314064|ref|YP_003849211.1| - 0.086 12.8 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 Toprim domain PIF1 PF05970.9 gi|304314064|ref|YP_003849211.1| - 0.087 11.7 0.1 0.16 10.9 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_19 PF13245.1 gi|304314064|ref|YP_003849211.1| - 0.1 12.3 0.3 0.31 10.8 0.2 1.7 1 0 0 1 1 1 0 Part of AAA domain Imm39 PF15600.1 gi|304314064|ref|YP_003849211.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 39 DUF87 PF01935.12 gi|304314064|ref|YP_003849211.1| - 0.16 11.7 1.1 0.77 9.5 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 DUF2075 PF09848.4 gi|304314064|ref|YP_003849211.1| - 0.16 10.9 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CdhD PF03599.11 gi|304314065|ref|YP_003849212.1| - 1.7e-94 316.4 0.3 2e-87 293.2 0.0 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.11 gi|304314066|ref|YP_003849213.1| - 4.4e-154 512.6 0.0 5.1e-154 512.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|304314066|ref|YP_003849213.1| - 2.2e-15 55.9 1.8 3.9e-15 55.1 1.3 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster Fer4_6 PF12837.2 gi|304314067|ref|YP_003849214.1| - 4.8e-13 48.3 41.6 1.2e-06 28.1 2.1 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|304314067|ref|YP_003849214.1| - 1.6e-12 46.4 37.9 2.8e-07 29.8 2.8 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304314067|ref|YP_003849214.1| - 3.9e-12 45.9 15.7 3.9e-12 45.9 10.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314067|ref|YP_003849214.1| - 6.4e-10 38.6 32.6 2.9e-06 26.9 8.4 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314067|ref|YP_003849214.1| - 2e-09 37.6 32.2 0.00032 21.0 8.2 3.9 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314067|ref|YP_003849214.1| - 2.9e-08 33.8 31.3 1.6e-05 25.0 7.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314067|ref|YP_003849214.1| - 4.3e-08 32.6 39.9 4.1e-06 26.4 2.0 4.7 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314067|ref|YP_003849214.1| - 7.2e-07 28.9 29.9 0.0016 18.2 6.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314067|ref|YP_003849214.1| - 0.00014 22.5 27.4 0.019 15.7 3.0 4.6 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314067|ref|YP_003849214.1| - 0.0003 20.8 36.3 0.039 14.2 1.6 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304314067|ref|YP_003849214.1| - 0.0034 17.8 43.9 0.42 11.3 3.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314067|ref|YP_003849214.1| - 0.032 14.5 10.7 0.094 13.0 1.0 4.4 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314067|ref|YP_003849214.1| - 0.067 13.7 31.9 3.7 8.1 8.9 4.0 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|304314067|ref|YP_003849214.1| - 0.18 11.8 33.7 0.43 10.6 9.8 3.5 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_5 PF12801.2 gi|304314067|ref|YP_003849214.1| - 0.28 11.0 1.9 3.3 7.5 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain HEAT_2 PF13646.1 gi|304314068|ref|YP_003849215.1| - 7.4e-56 186.4 11.7 4.5e-19 68.5 0.0 4.2 2 1 1 4 4 4 4 HEAT repeats HEAT_PBS PF03130.11 gi|304314068|ref|YP_003849215.1| - 3.1e-32 107.7 15.9 1.6e-06 28.0 0.1 8.5 8 1 0 8 8 8 7 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|304314068|ref|YP_003849215.1| - 2.4e-29 98.7 9.3 0.02 14.9 0.1 9.5 8 1 1 9 9 9 8 HEAT repeat HEAT_EZ PF13513.1 gi|304314068|ref|YP_003849215.1| - 3.5e-14 52.7 20.4 0.0028 18.0 0.4 8.1 5 2 4 9 9 9 6 HEAT-like repeat Cnd1 PF12717.2 gi|304314068|ref|YP_003849215.1| - 1.1e-05 25.4 1.9 3 7.6 0.0 5.5 3 1 2 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|304314068|ref|YP_003849215.1| - 0.00021 19.7 0.0 0.77 8.0 0.0 3.3 1 1 1 3 3 3 2 Adaptin N terminal region Arm PF00514.18 gi|304314068|ref|YP_003849215.1| - 0.00027 20.6 6.2 1.4 8.8 0.0 5.8 4 2 2 6 6 6 1 Armadillo/beta-catenin-like repeat DUF2435 PF10363.4 gi|304314068|ref|YP_003849215.1| - 0.014 15.2 1.6 22 5.0 0.1 5.2 3 1 2 5 5 5 0 Protein of unknown function (DUF2435) PAP_PilO PF06864.7 gi|304314068|ref|YP_003849215.1| - 0.078 11.3 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 Pilin accessory protein (PilO) Vitellogenin_N PF01347.17 gi|304314068|ref|YP_003849215.1| - 0.098 10.8 0.0 7.1 4.7 0.0 2.3 1 1 0 2 2 2 0 Lipoprotein amino terminal region ALF PF03752.8 gi|304314068|ref|YP_003849215.1| - 0.11 12.4 4.8 0.26 11.1 0.2 3.3 3 0 0 3 3 3 0 Short repeats of unknown function Trp_halogenase PF04820.9 gi|304314069|ref|YP_003849216.1| - 4e-12 45.5 0.0 5.6e-10 38.4 0.0 2.0 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|304314069|ref|YP_003849216.1| - 4.6e-12 45.5 0.1 3.1e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|304314069|ref|YP_003849216.1| - 6.1e-12 45.3 0.0 8.1e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|304314069|ref|YP_003849216.1| - 3.2e-08 32.8 0.2 0.00025 19.9 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|304314069|ref|YP_003849216.1| - 2e-07 30.3 0.6 0.002 17.2 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.7 gi|304314069|ref|YP_003849216.1| - 2.3e-07 30.0 0.0 0.015 14.2 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|304314069|ref|YP_003849216.1| - 0.00012 21.2 0.3 0.016 14.3 0.1 2.2 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.9 gi|304314069|ref|YP_003849216.1| - 0.00014 20.4 0.3 0.00025 19.6 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|304314069|ref|YP_003849216.1| - 0.00059 19.8 0.3 0.0017 18.3 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|304314069|ref|YP_003849216.1| - 0.00088 18.2 0.4 0.0026 16.6 0.2 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|304314069|ref|YP_003849216.1| - 0.0088 15.9 0.1 0.014 15.2 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|304314069|ref|YP_003849216.1| - 0.032 13.0 0.0 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Metallophos PF00149.23 gi|304314070|ref|YP_003849217.1| - 8.1e-20 71.0 2.5 1e-19 70.7 1.7 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|304314070|ref|YP_003849217.1| - 2.3e-17 63.2 0.2 3.5e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|304314070|ref|YP_003849217.1| - 0.016 14.3 0.0 0.09 11.9 0.0 1.9 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF1625 PF07787.7 gi|304314071|ref|YP_003849218.1| - 2.6 7.2 5.6 28 3.8 3.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1625) DUF3377 PF11857.3 gi|304314071|ref|YP_003849218.1| - 4.4 7.0 6.0 2.3 7.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) Cation_efflux PF01545.16 gi|304314071|ref|YP_003849218.1| - 6.1 5.8 13.1 2.1 7.3 6.7 1.9 1 1 1 2 2 2 0 Cation efflux family PhoU PF01895.14 gi|304314072|ref|YP_003849219.1| - 2.4e-26 91.9 10.1 2e-14 53.7 0.8 2.4 2 0 0 2 2 2 2 PhoU domain HTH_24 PF13412.1 gi|304314072|ref|YP_003849219.1| - 2.9e-07 29.7 0.1 5.5e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|304314072|ref|YP_003849219.1| - 5e-07 29.4 0.0 2e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|304314072|ref|YP_003849219.1| - 1.9e-06 27.4 0.0 4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|304314072|ref|YP_003849219.1| - 2.9e-05 23.6 0.1 7.3e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|304314072|ref|YP_003849219.1| - 4.3e-05 23.1 0.1 0.00012 21.6 0.0 1.8 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|304314072|ref|YP_003849219.1| - 0.00021 21.3 0.0 0.00053 20.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.12 gi|304314072|ref|YP_003849219.1| - 0.00041 19.8 0.2 0.0017 17.8 0.1 2.1 1 1 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4 PF04545.11 gi|304314072|ref|YP_003849219.1| - 0.0021 17.3 0.0 0.0083 15.4 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|304314072|ref|YP_003849219.1| - 0.0044 16.6 0.2 0.0084 15.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|304314072|ref|YP_003849219.1| - 0.0054 16.3 0.0 0.014 15.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain EAP30 PF04157.11 gi|304314072|ref|YP_003849219.1| - 0.0089 15.2 0.3 0.089 11.9 0.0 2.5 3 1 0 3 3 3 1 EAP30/Vps36 family FaeA PF04703.7 gi|304314072|ref|YP_003849219.1| - 0.014 15.4 0.3 0.036 14.2 0.1 1.8 2 0 0 2 2 1 0 FaeA-like protein HTH_37 PF13744.1 gi|304314072|ref|YP_003849219.1| - 0.017 14.9 0.7 0.089 12.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|304314072|ref|YP_003849219.1| - 0.024 14.4 0.1 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_Mga PF08280.6 gi|304314072|ref|YP_003849219.1| - 0.026 14.2 0.3 1.7 8.4 0.0 2.9 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain FeoC PF09012.5 gi|304314072|ref|YP_003849219.1| - 0.049 13.3 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|304314072|ref|YP_003849219.1| - 0.06 12.9 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r3 PF04539.11 gi|304314072|ref|YP_003849219.1| - 0.11 12.3 0.0 0.76 9.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 Citrate_synt PF00285.16 gi|304314073|ref|YP_003849220.1| - 1.3e-39 135.9 0.0 5.4e-33 114.1 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase PBP_like_2 PF12849.2 gi|304314074|ref|YP_003849221.1| - 1.9e-47 162.1 2.3 2.7e-47 161.5 1.6 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|304314074|ref|YP_003849221.1| - 1.8e-26 92.2 0.2 2.2e-26 92.0 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|304314074|ref|YP_003849221.1| - 1.9e-16 60.4 0.1 2.5e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|304314074|ref|YP_003849221.1| - 2.2e-10 40.7 6.7 5e-10 39.6 4.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|304314074|ref|YP_003849221.1| - 0.00028 20.7 2.0 0.16 11.6 0.0 2.8 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|304314074|ref|YP_003849221.1| - 0.00085 18.4 0.0 0.0043 16.1 0.0 2.1 1 1 0 1 1 1 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|304314074|ref|YP_003849221.1| - 0.0075 15.6 0.1 0.026 13.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|304314075|ref|YP_003849222.1| - 4.8e-50 170.6 0.1 7.9e-50 169.8 0.1 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|304314075|ref|YP_003849222.1| - 3.2e-23 81.6 0.0 3.7e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|304314075|ref|YP_003849222.1| - 6.6e-14 52.0 0.0 9.3e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|304314075|ref|YP_003849222.1| - 6.7e-06 26.0 0.2 0.00012 21.9 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|304314075|ref|YP_003849222.1| - 0.0013 18.5 0.0 0.081 12.6 0.0 2.1 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|304314075|ref|YP_003849222.1| - 0.0044 16.1 0.0 0.011 14.8 0.0 1.5 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|304314075|ref|YP_003849222.1| - 0.033 13.5 0.0 0.094 12.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|304314076|ref|YP_003849223.1| - 5.9e-31 107.4 20.0 5.9e-31 107.4 13.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0239 PF06783.6 gi|304314076|ref|YP_003849223.1| - 0.027 14.3 0.1 0.027 14.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) DUF4063 PF13272.1 gi|304314076|ref|YP_003849223.1| - 0.09 12.5 0.2 0.09 12.5 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4063) EXS PF03124.9 gi|304314076|ref|YP_003849223.1| - 2.7 6.9 10.1 5.4 5.9 4.0 2.1 2 0 0 2 2 2 0 EXS family BPD_transp_1 PF00528.17 gi|304314077|ref|YP_003849224.1| - 1.1e-29 103.3 15.6 1.1e-29 103.3 10.8 2.0 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|304314078|ref|YP_003849225.1| - 1.9e-31 109.1 0.0 2.6e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314078|ref|YP_003849225.1| - 4.9e-14 52.9 0.0 8.1e-08 32.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|304314078|ref|YP_003849225.1| - 1.6e-08 34.0 0.0 0.00011 21.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|304314078|ref|YP_003849225.1| - 8e-05 22.7 0.0 0.00023 21.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|304314078|ref|YP_003849225.1| - 0.00016 20.8 0.0 0.0003 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|304314078|ref|YP_003849225.1| - 0.00057 19.3 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|304314078|ref|YP_003849225.1| - 0.0013 19.5 0.0 0.0026 18.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|304314078|ref|YP_003849225.1| - 0.0018 17.3 0.9 0.78 8.7 0.6 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|304314078|ref|YP_003849225.1| - 0.0035 17.2 0.0 0.009 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|304314078|ref|YP_003849225.1| - 0.0096 15.9 0.2 0.023 14.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|304314078|ref|YP_003849225.1| - 0.011 14.5 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|304314078|ref|YP_003849225.1| - 0.012 15.9 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|304314078|ref|YP_003849225.1| - 0.019 14.4 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|304314078|ref|YP_003849225.1| - 0.019 13.6 0.0 0.15 10.6 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_13 PF13166.1 gi|304314078|ref|YP_003849225.1| - 0.02 13.3 0.0 0.25 9.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|304314078|ref|YP_003849225.1| - 0.022 14.6 0.0 0.088 12.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|304314078|ref|YP_003849225.1| - 0.025 14.2 0.2 0.29 10.7 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|304314078|ref|YP_003849225.1| - 0.027 13.9 0.1 0.059 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|304314078|ref|YP_003849225.1| - 0.029 14.6 0.0 0.081 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|304314078|ref|YP_003849225.1| - 0.032 14.4 0.0 0.075 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|304314078|ref|YP_003849225.1| - 0.034 13.8 1.1 0.48 10.1 0.0 2.4 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|304314078|ref|YP_003849225.1| - 0.05 13.5 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain PPV_E1_C PF00519.12 gi|304314078|ref|YP_003849225.1| - 0.079 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_5 PF07728.9 gi|304314078|ref|YP_003849225.1| - 0.08 12.6 0.0 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|304314078|ref|YP_003849225.1| - 0.082 13.1 0.1 0.66 10.1 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|304314078|ref|YP_003849225.1| - 0.089 12.3 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.18 gi|304314078|ref|YP_003849225.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase PhoU PF01895.14 gi|304314079|ref|YP_003849226.1| - 1e-15 57.9 8.6 6.9e-10 39.2 1.5 2.2 2 0 0 2 2 2 2 PhoU domain DUF2226 PF09987.4 gi|304314080|ref|YP_003849227.1| - 1.8e-11 43.7 3.0 4.6e-07 29.2 0.2 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2226) Rad60-SLD PF11976.3 gi|304314080|ref|YP_003849227.1| - 0.071 12.8 0.1 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-2 like Rad60 SUMO-like DUF2165 PF09933.4 gi|304314080|ref|YP_003849227.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Predicted small integral membrane protein (DUF2165) PhoU PF01895.14 gi|304314081|ref|YP_003849228.1| - 1.9e-28 98.7 11.0 4.1e-15 55.9 1.3 2.1 2 0 0 2 2 2 2 PhoU domain Sds3 PF08598.6 gi|304314081|ref|YP_003849228.1| - 0.094 12.2 0.9 0.18 11.3 0.6 1.4 1 0 0 1 1 1 0 Sds3-like DUF86 PF01934.12 gi|304314081|ref|YP_003849228.1| - 0.19 11.3 1.8 6.9 6.3 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function DUF86 Fumerase PF05681.9 gi|304314082|ref|YP_003849229.1| - 4.5e-93 311.2 0.1 5.2e-93 311.0 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fer4 PF00037.22 gi|304314083|ref|YP_003849230.1| - 2.2e-18 65.0 34.8 2.4e-09 36.3 3.3 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314083|ref|YP_003849230.1| - 4.1e-15 54.8 36.5 2.7e-06 26.9 2.0 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304314083|ref|YP_003849230.1| - 1.6e-14 53.5 12.7 1.6e-14 53.5 8.8 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314083|ref|YP_003849230.1| - 3.6e-12 46.4 31.2 4.5e-08 33.3 7.6 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314083|ref|YP_003849230.1| - 2.4e-11 43.7 28.8 2.6e-06 27.6 7.5 3.4 2 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314083|ref|YP_003849230.1| - 3.2e-10 39.6 32.4 5.6e-07 29.2 7.4 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314083|ref|YP_003849230.1| - 1.8e-09 38.1 27.1 0.011 16.4 3.8 4.6 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|304314083|ref|YP_003849230.1| - 3.3e-09 36.6 41.1 0.01 16.3 4.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304314083|ref|YP_003849230.1| - 2.2e-07 30.6 37.7 0.0063 16.7 2.7 5.0 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314083|ref|YP_003849230.1| - 3.5e-07 29.7 36.9 2.5e-06 27.0 2.2 4.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314083|ref|YP_003849230.1| - 3.9e-05 23.4 34.5 0.0001 22.0 8.1 4.0 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314083|ref|YP_003849230.1| - 0.0012 19.0 26.3 0.011 16.0 1.9 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314083|ref|YP_003849230.1| - 0.0017 18.3 29.1 0.014 15.3 7.2 4.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314083|ref|YP_003849230.1| - 0.0077 16.5 1.8 0.0077 16.5 1.2 4.5 4 2 1 5 5 5 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|304314083|ref|YP_003849230.1| - 0.025 15.0 4.4 0.025 15.0 3.1 4.5 3 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314083|ref|YP_003849230.1| - 0.26 11.8 26.6 0.081 13.5 6.4 4.3 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|304314084|ref|YP_003849231.1| - 2.6e-17 61.8 31.1 4.5e-08 32.6 1.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|304314084|ref|YP_003849231.1| - 2.1e-13 49.2 39.1 9.4e-10 37.6 2.7 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314084|ref|YP_003849231.1| - 1.2e-12 47.9 29.7 8.7e-06 26.0 0.6 4.3 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304314084|ref|YP_003849231.1| - 1.6e-10 40.7 14.8 1.6e-10 40.7 10.3 2.2 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314084|ref|YP_003849231.1| - 5.9e-10 38.4 33.0 1.6e-06 27.6 1.9 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314084|ref|YP_003849231.1| - 3.1e-09 36.4 33.4 5.5e-06 26.0 8.2 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314084|ref|YP_003849231.1| - 5.4e-09 35.9 39.6 0.00036 20.8 3.2 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314084|ref|YP_003849231.1| - 1.9e-08 34.4 33.4 8.1e-06 26.0 7.0 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314084|ref|YP_003849231.1| - 8.5e-07 28.8 33.1 0.00015 21.7 1.1 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314084|ref|YP_003849231.1| - 1.4e-06 28.9 25.9 0.024 15.3 2.2 4.3 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|304314084|ref|YP_003849231.1| - 5.2e-05 23.0 29.3 0.00078 19.2 2.5 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314084|ref|YP_003849231.1| - 0.0012 19.3 24.5 0.038 14.5 5.1 3.9 3 2 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304314084|ref|YP_003849231.1| - 0.0016 18.7 29.4 0.014 15.7 1.1 4.4 2 1 3 5 5 5 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314084|ref|YP_003849231.1| - 0.013 15.4 31.0 0.053 13.5 7.3 4.0 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314084|ref|YP_003849231.1| - 0.042 14.2 2.1 0.042 14.2 1.4 4.6 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314084|ref|YP_003849231.1| - 0.31 11.4 24.1 0.69 10.3 5.5 3.9 3 2 0 3 3 3 0 4Fe-4S single cluster domain TPP_enzyme_C PF02775.16 gi|304314085|ref|YP_003849232.1| - 2.2e-30 105.2 0.2 4.8e-30 104.1 0.0 1.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|304314085|ref|YP_003849232.1| - 0.0046 15.9 0.2 0.029 13.3 0.2 2.0 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|304314086|ref|YP_003849233.1| - 1.1e-71 241.0 0.2 1.4e-71 240.6 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|304314086|ref|YP_003849233.1| - 2.8e-06 27.2 0.0 6.8e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|304314087|ref|YP_003849234.1| - 2.2e-14 52.3 19.8 5.8e-09 35.1 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314087|ref|YP_003849234.1| - 1.4e-11 44.5 35.8 1.2e-06 28.7 10.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314087|ref|YP_003849234.1| - 3.7e-11 42.6 27.6 4.8e-08 32.6 11.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314087|ref|YP_003849234.1| - 3.7e-10 39.2 18.8 1.5e-05 24.6 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314087|ref|YP_003849234.1| - 5.2e-10 38.6 12.4 4e-05 23.2 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314087|ref|YP_003849234.1| - 7.2e-09 35.7 9.7 0.00016 21.8 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314087|ref|YP_003849234.1| - 1.1e-08 34.7 15.6 2.1e-08 33.8 10.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314087|ref|YP_003849234.1| - 1.6e-08 35.1 15.5 3.4e-05 24.4 2.5 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304314087|ref|YP_003849234.1| - 4.5e-06 26.6 6.9 0.0075 16.2 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314087|ref|YP_003849234.1| - 1e-05 25.8 11.3 0.00073 19.9 0.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314087|ref|YP_003849234.1| - 6.6e-05 22.9 15.3 0.0058 16.8 3.0 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314087|ref|YP_003849234.1| - 0.002 18.6 17.7 0.022 15.3 2.4 2.7 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304314087|ref|YP_003849234.1| - 0.0039 17.5 12.3 0.26 11.6 2.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314087|ref|YP_003849234.1| - 0.005 17.2 17.5 0.045 14.1 3.6 2.8 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|304314087|ref|YP_003849234.1| - 0.048 14.2 20.9 0.063 13.8 4.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304314087|ref|YP_003849234.1| - 0.18 11.6 7.6 0.42 10.5 5.3 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.13 gi|304314088|ref|YP_003849235.1| - 2.3e-44 151.3 0.5 2.8e-44 151.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Torsin PF06309.6 gi|304314088|ref|YP_003849235.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Torsin Pterin_bind PF00809.17 gi|304314089|ref|YP_003849236.1| - 2.6e-25 89.0 0.0 4.5e-25 88.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|304314089|ref|YP_003849236.1| - 3.2e-11 43.0 0.1 7.4e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Polysacc_deac_1 PF01522.16 gi|304314089|ref|YP_003849236.1| - 0.0062 16.1 0.0 0.69 9.5 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase ATP_bind_3 PF01171.15 gi|304314090|ref|YP_003849237.1| - 1e-13 51.1 0.0 1.4e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|304314090|ref|YP_003849237.1| - 0.0023 16.5 0.0 0.0033 16.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|304314090|ref|YP_003849237.1| - 0.0072 15.2 0.0 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|304314090|ref|YP_003849237.1| - 0.053 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase A2L_zn_ribbon PF08792.5 gi|304314090|ref|YP_003849237.1| - 3.3 7.2 9.8 0.54 9.7 0.9 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain ThiS PF02597.15 gi|304314091|ref|YP_003849238.1| - 1.8e-08 34.6 0.4 2e-08 34.5 0.3 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|304314091|ref|YP_003849238.1| - 0.0063 16.3 0.4 0.0095 15.7 0.2 1.4 1 1 0 1 1 1 1 Bacteriophage lambda tail assembly protein I TilS_C PF11734.3 gi|304314091|ref|YP_003849238.1| - 0.033 13.4 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 TilS substrate C-terminal domain Tox-MPTase4 PF15640.1 gi|304314091|ref|YP_003849238.1| - 0.11 12.1 1.3 0.26 10.9 0.4 1.7 1 1 1 2 2 2 0 Metallopeptidase toxin 4 MAP2_projctn PF08377.5 gi|304314091|ref|YP_003849238.1| - 0.23 8.9 1.2 0.24 8.8 0.9 1.0 1 0 0 1 1 1 0 MAP2/Tau projection domain DUF89 PF01937.14 gi|304314092|ref|YP_003849239.1| - 4.5e-52 176.9 0.1 5.1e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Thioredoxin_7 PF13899.1 gi|304314093|ref|YP_003849240.1| - 2.3e-16 59.5 0.0 3e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|304314093|ref|YP_003849240.1| - 1.3e-15 57.6 0.0 1.1e-14 54.5 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|304314093|ref|YP_003849240.1| - 1.5e-11 43.8 0.0 2e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.10 gi|304314093|ref|YP_003849240.1| - 4.8e-11 42.6 0.0 5.6e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_8 PF13905.1 gi|304314093|ref|YP_003849240.1| - 3.8e-05 23.7 0.1 0.021 14.9 0.1 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|304314093|ref|YP_003849240.1| - 0.00014 21.6 0.0 0.00027 20.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|304314093|ref|YP_003849240.1| - 0.00052 19.5 0.3 0.0027 17.2 0.2 1.9 1 1 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|304314093|ref|YP_003849240.1| - 0.00065 19.2 0.1 0.032 13.7 0.0 2.1 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.16 gi|304314093|ref|YP_003849240.1| - 0.0015 18.2 0.1 0.36 10.5 0.0 2.4 1 1 1 2 2 2 1 AhpC/TSA family DUF953 PF06110.6 gi|304314093|ref|YP_003849240.1| - 0.022 14.2 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DUF929 PF06053.6 gi|304314093|ref|YP_003849240.1| - 0.073 12.1 0.2 0.24 10.4 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF929) Pox_E10 PF04805.7 gi|304314093|ref|YP_003849240.1| - 0.091 12.2 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 E10-like protein conserved region TrbC_Ftype PF09673.5 gi|304314093|ref|YP_003849240.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein DsbD PF02683.10 gi|304314094|ref|YP_003849241.1| - 1.5e-32 112.9 16.6 1.9e-32 112.5 11.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3784 PF12650.2 gi|304314094|ref|YP_003849241.1| - 2.7 7.9 9.9 0.1 12.5 0.9 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) DUF1932 PF09130.6 gi|304314095|ref|YP_003849242.1| - 9.2e-12 44.5 0.4 1.8e-11 43.6 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1932) F420_oxidored PF03807.12 gi|304314095|ref|YP_003849242.1| - 3.4e-08 33.7 0.3 9.6e-08 32.3 0.2 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|304314095|ref|YP_003849242.1| - 1.9e-06 27.8 1.5 3.1e-06 27.1 1.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|304314095|ref|YP_003849242.1| - 0.00046 19.6 0.1 0.00097 18.5 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain PDH PF02153.12 gi|304314095|ref|YP_003849242.1| - 0.0062 15.4 0.0 0.0092 14.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|304314095|ref|YP_003849242.1| - 0.042 13.0 0.5 0.21 10.7 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|304314095|ref|YP_003849242.1| - 0.059 13.4 2.9 0.061 13.4 0.0 2.3 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|304314095|ref|YP_003849242.1| - 0.13 12.5 0.2 0.31 11.3 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding HIGH_NTase1 PF05636.6 gi|304314097|ref|YP_003849244.1| - 5.3e-06 25.7 0.2 0.00018 20.6 0.0 2.1 2 0 0 2 2 2 1 HIGH Nucleotidyl Transferase CTP_transf_2 PF01467.21 gi|304314097|ref|YP_003849244.1| - 2.2e-05 24.5 0.0 5.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|304314097|ref|YP_003849244.1| - 0.0027 17.3 0.0 0.0055 16.3 0.0 1.5 1 0 0 1 1 1 1 FAD synthetase SmpB PF01668.13 gi|304314097|ref|YP_003849244.1| - 0.011 15.4 0.0 0.036 13.8 0.0 1.8 1 0 0 1 1 1 0 SmpB protein Radical_SAM PF04055.16 gi|304314098|ref|YP_003849245.1| - 0.011 15.9 0.1 0.023 14.8 0.1 1.5 2 0 0 2 2 2 0 Radical SAM superfamily DUF3020 PF11223.3 gi|304314098|ref|YP_003849245.1| - 0.066 13.6 0.9 0.14 12.6 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3020) DUF1829 PF08862.5 gi|304314098|ref|YP_003849245.1| - 0.22 11.8 1.5 0.23 11.7 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF1829 Bac_luciferase PF00296.15 gi|304314099|ref|YP_003849246.1| - 1.2e-62 211.7 0.2 1.4e-62 211.6 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Nitro_FeMo-Co PF02579.12 gi|304314099|ref|YP_003849246.1| - 0.021 14.9 0.1 7.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor PHP PF02811.14 gi|304314099|ref|YP_003849246.1| - 0.039 13.7 0.2 0.042 13.6 0.1 1.3 1 1 0 1 1 1 0 PHP domain Glyco_transf_20 PF00982.16 gi|304314100|ref|YP_003849247.1| - 1.1e-133 446.2 0.0 1.2e-133 446.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Pox_Rif PF03340.8 gi|304314100|ref|YP_003849247.1| - 0.034 12.2 0.0 0.049 11.6 0.0 1.2 1 0 0 1 1 1 0 Poxvirus rifampicin resistance protein PGM_PMM_I PF02878.11 gi|304314101|ref|YP_003849248.1| - 1.6e-23 82.6 0.0 8e-23 80.4 0.0 2.1 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|304314101|ref|YP_003849248.1| - 2.8e-12 46.6 0.0 5.3e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|304314101|ref|YP_003849248.1| - 7.6e-10 39.0 0.0 1.9e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|304314101|ref|YP_003849248.1| - 1.2e-08 34.8 0.1 4.2e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF2372 PF10178.4 gi|304314101|ref|YP_003849248.1| - 0.095 12.8 0.0 0.46 10.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2372) NTP_transferase PF00483.18 gi|304314102|ref|YP_003849249.1| - 1.4e-18 67.0 0.0 1.8e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|304314102|ref|YP_003849249.1| - 1.4e-16 59.1 11.9 3.3e-08 32.6 1.2 4.7 1 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|304314102|ref|YP_003849249.1| - 0.063 12.8 18.6 0.32 10.5 2.2 4.4 2 2 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase NTP_transferase PF00483.18 gi|304314103|ref|YP_003849250.1| - 2e-21 76.4 0.0 2.5e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|304314103|ref|YP_003849250.1| - 1.9e-12 47.5 0.0 2.1e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|304314103|ref|YP_003849250.1| - 0.0083 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Trehalose_PPase PF02358.11 gi|304314104|ref|YP_003849251.1| - 3.6e-47 160.2 0.0 4.3e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.7 gi|304314104|ref|YP_003849251.1| - 0.0043 16.6 0.0 0.012 15.2 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|304314104|ref|YP_003849251.1| - 0.095 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Nudix_N PF12535.3 gi|304314104|ref|YP_003849251.1| - 1.6 8.2 3.6 5.8 6.4 0.0 2.7 3 0 0 3 3 3 0 Hydrolase of X-linked nucleoside diphosphate N terminal DUF2115 PF09888.4 gi|304314105|ref|YP_003849252.1| - 0.066 13.3 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) DNA_Packaging_2 PF11123.3 gi|304314105|ref|YP_003849252.1| - 0.097 12.5 0.1 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 DNA packaging protein MutS_V PF00488.16 gi|304314106|ref|YP_003849253.1| - 4.8e-10 39.2 1.0 9.9e-10 38.2 0.1 1.9 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.1 gi|304314106|ref|YP_003849253.1| - 2.3e-05 24.4 1.4 7.8e-05 22.7 1.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_14 PF13173.1 gi|304314106|ref|YP_003849253.1| - 4.3e-05 23.4 0.0 0.00015 21.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|304314106|ref|YP_003849253.1| - 0.00029 20.0 0.0 0.00051 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|304314106|ref|YP_003849253.1| - 0.00046 20.1 0.0 0.0013 18.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Ribosomal_S13 PF00416.17 gi|304314106|ref|YP_003849253.1| - 0.0042 17.5 3.7 0.03 14.7 0.3 3.8 2 2 0 2 2 2 1 Ribosomal protein S13/S18 HHH PF00633.18 gi|304314106|ref|YP_003849253.1| - 0.012 15.2 0.3 0.46 10.2 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_29 PF13555.1 gi|304314106|ref|YP_003849253.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|304314106|ref|YP_003849253.1| - 0.018 15.2 2.7 0.032 14.4 0.3 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.7 gi|304314106|ref|YP_003849253.1| - 0.038 13.6 0.0 0.09 12.4 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_21 PF13304.1 gi|304314106|ref|YP_003849253.1| - 0.054 13.4 4.3 0.36 10.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain HHH_8 PF14716.1 gi|304314106|ref|YP_003849253.1| - 0.087 13.0 1.1 0.85 9.8 0.0 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix domain ABC_tran PF00005.22 gi|304314106|ref|YP_003849253.1| - 0.1 12.8 0.1 0.64 10.3 0.0 2.3 3 0 0 3 3 2 0 ABC transporter AAA_23 PF13476.1 gi|304314106|ref|YP_003849253.1| - 0.26 11.5 4.8 0.41 10.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|304314106|ref|YP_003849253.1| - 0.28 11.9 3.6 2.1 9.1 0.0 3.3 2 2 0 2 2 2 0 AAA domain HHH_2 PF12826.2 gi|304314106|ref|YP_003849253.1| - 0.62 9.9 3.7 1.3 8.9 0.0 2.9 2 1 1 3 3 2 0 Helix-hairpin-helix motif AAA_10 PF12846.2 gi|304314106|ref|YP_003849253.1| - 1 8.7 5.4 1.2 8.5 0.0 3.1 3 1 0 3 3 3 0 AAA-like domain NTPase_1 PF03266.10 gi|304314106|ref|YP_003849253.1| - 2.3 7.8 7.9 8.8 6.0 0.1 3.4 4 0 0 4 4 4 0 NTPase Peptidase_U32 PF01136.14 gi|304314107|ref|YP_003849254.1| - 2.6e-89 298.1 0.0 1.5e-77 259.6 0.0 2.8 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|304314107|ref|YP_003849254.1| - 5.3e-19 68.4 0.0 9.6e-19 67.6 0.0 1.5 1 0 0 1 1 1 1 Collagenase HemN_C PF06969.11 gi|304314107|ref|YP_003849254.1| - 0.059 13.4 0.1 0.21 11.6 0.1 2.0 1 0 0 1 1 1 0 HemN C-terminal domain Response_reg PF00072.19 gi|304314108|ref|YP_003849255.1| - 2.7e-23 82.0 0.3 5.4e-23 81.1 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|304314108|ref|YP_003849255.1| - 1.2e-20 74.4 0.0 3.6e-20 72.9 0.0 1.7 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|304314108|ref|YP_003849255.1| - 3e-12 46.7 0.0 2.7e-10 40.4 0.0 2.4 2 1 0 2 2 2 1 GAF domain GAF PF01590.21 gi|304314108|ref|YP_003849255.1| - 2.3e-11 44.0 0.0 5.3e-11 42.8 0.0 1.6 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|304314108|ref|YP_003849255.1| - 2.3e-10 40.7 0.0 5.4e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|304314108|ref|YP_003849255.1| - 1.3e-09 38.0 0.0 4.6e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|304314108|ref|YP_003849255.1| - 2.8e-07 30.3 0.0 6e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.1 gi|304314108|ref|YP_003849255.1| - 0.0078 16.4 0.0 0.048 13.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain Thymidylate_kin PF02223.12 gi|304314109|ref|YP_003849256.1| - 1.6e-48 164.5 0.0 1.8e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase MobB PF03205.9 gi|304314109|ref|YP_003849256.1| - 0.0079 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|304314109|ref|YP_003849256.1| - 0.01 15.8 0.0 0.015 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|304314109|ref|YP_003849256.1| - 0.019 14.3 0.0 0.073 12.4 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|304314109|ref|YP_003849256.1| - 0.055 13.7 0.0 0.1 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|304314109|ref|YP_003849256.1| - 0.057 13.3 0.0 0.085 12.7 0.0 1.3 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|304314109|ref|YP_003849256.1| - 0.099 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase SRP54 PF00448.17 gi|304314109|ref|YP_003849256.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Prefoldin_3 PF13758.1 gi|304314110|ref|YP_003849257.1| - 0.0002 21.1 0.1 0.00022 20.9 0.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit RuvB_N PF05496.7 gi|304314110|ref|YP_003849257.1| - 0.068 12.2 0.0 0.073 12.1 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Pox_A_type_inc PF04508.7 gi|304314110|ref|YP_003849257.1| - 0.85 9.5 8.6 3.1 7.8 1.2 2.4 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat tRNA-synt_1b PF00579.20 gi|304314111|ref|YP_003849258.1| - 8.9e-51 172.7 0.0 1e-50 172.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|304314111|ref|YP_003849258.1| - 2.9e-06 26.2 0.0 0.024 13.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) DALR_1 PF05746.10 gi|304314111|ref|YP_003849258.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 DALR anticodon binding domain NMD3 PF04981.8 gi|304314112|ref|YP_003849259.1| - 6.2e-58 195.6 0.0 8.3e-58 195.2 0.0 1.2 1 0 0 1 1 1 1 NMD3 family DUF4428 PF14471.1 gi|304314112|ref|YP_003849259.1| - 0.064 13.0 0.9 15 5.3 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) zf-ribbon_3 PF13248.1 gi|304314112|ref|YP_003849259.1| - 0.18 11.0 4.1 17 4.7 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain FYVE PF01363.16 gi|304314112|ref|YP_003849259.1| - 0.67 9.8 2.8 2.2 8.2 1.1 2.1 2 0 0 2 2 2 0 FYVE zinc finger DZR PF12773.2 gi|304314112|ref|YP_003849259.1| - 0.83 9.5 7.3 7.1 6.5 0.7 3.0 2 1 0 2 2 2 0 Double zinc ribbon eIF-5_eIF-2B PF01873.12 gi|304314113|ref|YP_003849260.1| - 7.4e-46 154.8 0.0 8.6e-46 154.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf-RanBP PF00641.13 gi|304314113|ref|YP_003849260.1| - 0.32 10.1 0.1 0.32 10.1 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others MCM PF00493.18 gi|304314114|ref|YP_003849261.1| - 5.6e-141 469.1 0.1 8.6e-141 468.5 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|304314114|ref|YP_003849261.1| - 1.8e-15 57.4 1.8 1e-14 55.0 0.1 2.9 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|304314114|ref|YP_003849261.1| - 2.4e-07 30.1 0.0 0.00039 19.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|304314114|ref|YP_003849261.1| - 0.00092 18.9 0.0 0.0037 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Resolvase PF00239.16 gi|304314114|ref|YP_003849261.1| - 0.0019 18.0 0.2 0.034 14.0 0.1 2.8 1 1 1 2 2 2 1 Resolvase, N terminal domain AAA_3 PF07726.6 gi|304314114|ref|YP_003849261.1| - 0.0056 16.2 0.0 0.064 12.8 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|304314114|ref|YP_003849261.1| - 0.006 16.7 3.0 0.32 11.1 0.1 3.5 1 1 2 3 3 3 1 AAA domain tRNA_anti-codon PF01336.20 gi|304314114|ref|YP_003849261.1| - 0.01 15.6 0.4 0.025 14.4 0.0 1.9 2 0 0 2 2 1 0 OB-fold nucleic acid binding domain Sigma54_activat PF00158.21 gi|304314114|ref|YP_003849261.1| - 0.014 14.8 0.0 3.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain HypA PF01155.14 gi|304314114|ref|YP_003849261.1| - 0.04 13.5 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA PF00004.24 gi|304314114|ref|YP_003849261.1| - 0.059 13.5 0.0 0.23 11.6 0.0 2.2 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.5 gi|304314114|ref|YP_003849261.1| - 0.089 12.7 0.4 0.089 12.7 0.3 1.9 2 0 0 2 2 1 0 Zinc ribbon domain AAA_16 PF13191.1 gi|304314114|ref|YP_003849261.1| - 0.14 12.1 2.0 0.7 9.8 0.0 2.9 2 1 2 4 4 4 0 AAA ATPase domain DUF4131 PF13567.1 gi|304314114|ref|YP_003849261.1| - 0.19 11.1 0.1 0.52 9.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) AAA_18 PF13238.1 gi|304314114|ref|YP_003849261.1| - 0.74 10.1 0.0 0.74 10.1 0.0 3.2 4 0 0 4 4 4 0 AAA domain HALZ PF02183.13 gi|304314115|ref|YP_003849262.1| - 0.012 15.3 0.9 0.041 13.5 0.6 2.1 1 1 0 1 1 1 0 Homeobox associated leucine zipper DUF3573 PF12097.3 gi|304314115|ref|YP_003849262.1| - 0.014 14.0 0.7 0.017 13.7 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) CCDC144C PF14915.1 gi|304314115|ref|YP_003849262.1| - 0.017 14.0 3.7 0.021 13.7 2.6 1.0 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region Toxin_52 PF15605.1 gi|304314115|ref|YP_003849262.1| - 0.031 14.1 0.3 0.053 13.4 0.2 1.4 1 0 0 1 1 1 0 Putative toxin 52 DUF3066 PF11266.3 gi|304314115|ref|YP_003849262.1| - 0.05 13.3 0.1 0.06 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3066) TPR_MLP1_2 PF07926.7 gi|304314115|ref|YP_003849262.1| - 0.31 10.7 4.3 0.33 10.7 1.9 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|304314115|ref|YP_003849262.1| - 7.6 6.0 13.6 1.9 8.0 1.2 2.1 2 0 0 2 2 2 0 IncA protein FtsJ PF01728.14 gi|304314116|ref|YP_003849263.1| - 1.4e-54 184.8 0.0 1.6e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|304314116|ref|YP_003849263.1| - 3.2e-06 26.8 0.0 2.2e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304314116|ref|YP_003849263.1| - 0.0055 17.2 0.2 0.07 13.7 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|304314116|ref|YP_003849263.1| - 0.0057 16.3 0.0 0.021 14.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|304314116|ref|YP_003849263.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Metallophos_2 PF12850.2 gi|304314117|ref|YP_003849264.1| - 7.2e-32 110.3 0.0 8.2e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|304314117|ref|YP_003849264.1| - 3e-07 30.0 0.3 0.00024 20.5 0.1 2.3 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase DPRP PF04244.8 gi|304314119|ref|YP_003849266.1| - 1.7e-44 152.0 0.0 2.3e-44 151.5 0.0 1.2 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|304314119|ref|YP_003849266.1| - 8.1e-11 41.6 0.0 1.2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase Ion_trans_2 PF07885.11 gi|304314121|ref|YP_003849268.1| - 1.4e-05 24.6 7.4 1.4e-05 24.6 5.1 2.1 2 1 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|304314121|ref|YP_003849268.1| - 0.00016 21.0 12.4 0.00027 20.2 8.6 1.5 1 1 0 1 1 1 1 Ion transport protein Lig_chan PF00060.21 gi|304314121|ref|YP_003849268.1| - 0.00035 20.3 0.4 0.0008 19.1 0.2 1.6 1 1 0 1 1 1 1 Ligand-gated ion channel Yip1 PF04893.12 gi|304314122|ref|YP_003849269.1| - 3.2e-12 46.2 29.5 4e-12 45.9 20.4 1.1 1 0 0 1 1 1 1 Yip1 domain DUF2154 PF09922.4 gi|304314123|ref|YP_003849270.1| - 0.016 14.8 0.0 0.14 11.8 0.0 2.1 1 1 1 2 2 2 0 Cell wall-active antibiotics response protein (DUF2154) Lipocalin_4 PF13648.1 gi|304314123|ref|YP_003849270.1| - 0.04 14.5 3.1 0.061 13.9 1.8 1.5 1 1 0 1 1 1 0 Lipocalin-like domain Radical_SAM PF04055.16 gi|304314124|ref|YP_003849271.1| - 1.7e-28 99.8 0.2 2.3e-27 96.2 0.1 2.4 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|304314124|ref|YP_003849271.1| - 5.7e-26 90.7 0.7 4e-24 84.8 0.1 3.0 2 1 1 3 3 3 1 B12 binding domain Fer4_12 PF13353.1 gi|304314124|ref|YP_003849271.1| - 0.1 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|304314125|ref|YP_003849272.1| - 9.6e-23 81.1 0.1 2e-22 80.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|304314125|ref|YP_003849272.1| - 9.9e-11 41.8 1.4 3e-10 40.3 1.0 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|304314125|ref|YP_003849272.1| - 1.4e-09 38.2 0.0 2.8e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304314125|ref|YP_003849272.1| - 3.4e-08 33.5 0.0 7.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Nit_Regul_Hom PF10126.4 gi|304314125|ref|YP_003849272.1| - 0.11 12.2 0.0 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII TM2 PF05154.11 gi|304314125|ref|YP_003849272.1| - 0.11 12.6 2.3 0.14 12.3 0.3 2.1 2 0 0 2 2 2 0 TM2 domain TetR_N PF00440.18 gi|304314126|ref|YP_003849273.1| - 1.9e-17 62.5 3.9 4.1e-17 61.5 0.1 2.8 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|304314126|ref|YP_003849273.1| - 0.0011 18.3 0.2 0.0034 16.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 LacI PF00356.16 gi|304314126|ref|YP_003849273.1| - 0.0052 16.3 0.4 0.15 11.6 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Sigma70_r4 PF04545.11 gi|304314126|ref|YP_003849273.1| - 0.014 14.6 0.3 0.041 13.1 0.2 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2934 PF11154.3 gi|304314126|ref|YP_003849273.1| - 0.033 13.5 0.1 0.073 12.4 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2934) DUF3022 PF11226.3 gi|304314127|ref|YP_003849274.1| - 0.026 14.3 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3022) DUF1456 PF07308.8 gi|304314127|ref|YP_003849274.1| - 0.07 13.1 0.1 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) Epimerase PF01370.16 gi|304314128|ref|YP_003849275.1| - 1.5e-76 256.9 0.0 1.9e-76 256.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|304314128|ref|YP_003849275.1| - 4.9e-22 78.1 0.0 6e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|304314128|ref|YP_003849275.1| - 2.6e-20 72.3 0.0 3.3e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|304314128|ref|YP_003849275.1| - 9.2e-18 64.1 0.0 3.6e-17 62.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|304314128|ref|YP_003849275.1| - 9.5e-18 64.0 0.0 4e-14 52.1 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|304314128|ref|YP_003849275.1| - 9.7e-09 35.4 0.0 1.4e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|304314128|ref|YP_003849275.1| - 0.0001 21.6 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|304314128|ref|YP_003849275.1| - 0.0024 17.8 0.1 0.015 15.2 0.1 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|304314128|ref|YP_003849275.1| - 0.0036 17.2 0.0 0.0093 15.8 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|304314128|ref|YP_003849275.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|304314128|ref|YP_003849275.1| - 0.12 12.0 0.0 0.57 9.8 0.0 2.0 1 1 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|304314128|ref|YP_003849275.1| - 0.17 11.8 0.1 0.47 10.3 0.1 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus dTDP_sugar_isom PF00908.12 gi|304314129|ref|YP_003849276.1| - 1.3e-73 246.0 0.0 1.5e-73 245.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.18 gi|304314130|ref|YP_003849277.1| - 6.3e-69 232.0 0.0 7.6e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|304314130|ref|YP_003849277.1| - 2e-11 44.2 0.0 2.6e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain RmlD_sub_bind PF04321.12 gi|304314131|ref|YP_003849278.1| - 5e-104 347.2 0.0 5.6e-104 347.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|304314131|ref|YP_003849278.1| - 3.1e-23 82.4 0.1 5.6e-23 81.5 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|304314131|ref|YP_003849278.1| - 4.8e-15 55.2 0.4 1.9e-12 46.7 0.0 2.8 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|304314131|ref|YP_003849278.1| - 2.1e-14 52.9 0.1 8.6e-12 44.3 0.0 2.3 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|304314131|ref|YP_003849278.1| - 4.7e-14 51.9 0.0 1.6e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|304314131|ref|YP_003849278.1| - 4e-06 26.9 0.1 1.5e-05 25.1 0.1 1.8 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|304314131|ref|YP_003849278.1| - 0.0031 17.4 0.9 0.78 9.6 0.2 2.6 2 1 1 3 3 3 2 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|304314131|ref|YP_003849278.1| - 0.02 15.1 0.1 0.036 14.3 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|304314131|ref|YP_003849278.1| - 0.051 13.4 0.1 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HAD_2 PF13419.1 gi|304314132|ref|YP_003849279.1| - 5.7e-12 46.1 0.0 7.6e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|304314132|ref|YP_003849279.1| - 8.9e-11 41.3 0.1 1.8e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|304314132|ref|YP_003849279.1| - 4.5e-09 37.0 0.0 3.2e-08 34.2 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304314132|ref|YP_003849279.1| - 2.9e-05 24.3 0.2 0.00076 19.7 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Metallophos_2 PF12850.2 gi|304314132|ref|YP_003849279.1| - 0.13 12.1 0.0 0.37 10.6 0.0 1.7 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain HTH_5 PF01022.15 gi|304314134|ref|YP_003849281.1| - 5.2e-18 64.4 0.5 1.2e-17 63.2 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|304314134|ref|YP_003849281.1| - 2.4e-14 52.8 0.2 3.7e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|304314134|ref|YP_003849281.1| - 1.2e-05 25.2 0.0 1.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|304314134|ref|YP_003849281.1| - 4.3e-05 23.7 0.1 0.00023 21.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|304314134|ref|YP_003849281.1| - 0.0016 18.1 0.1 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_ECF PF07638.6 gi|304314134|ref|YP_003849281.1| - 0.0029 17.2 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 ECF sigma factor MarR_2 PF12802.2 gi|304314134|ref|YP_003849281.1| - 0.0037 16.9 0.2 0.0074 15.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_1 PF00126.22 gi|304314134|ref|YP_003849281.1| - 0.0089 15.7 0.5 0.02 14.6 0.3 1.6 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.1 gi|304314134|ref|YP_003849281.1| - 0.0099 15.2 0.1 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|304314134|ref|YP_003849281.1| - 0.014 15.0 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.17 gi|304314134|ref|YP_003849281.1| - 0.016 14.8 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|304314134|ref|YP_003849281.1| - 0.019 14.9 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.7 gi|304314134|ref|YP_003849281.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Cyclase PF04199.8 gi|304314135|ref|YP_003849282.1| - 2.1e-25 89.3 0.0 2.8e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase UPF0066 PF01980.11 gi|304314136|ref|YP_003849283.1| - 7.2e-37 125.9 0.0 8.2e-37 125.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Flavodoxin_4 PF12682.2 gi|304314137|ref|YP_003849284.1| - 2.1e-13 49.8 0.0 8.6e-13 47.9 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|304314137|ref|YP_003849284.1| - 3.2e-08 33.1 0.0 0.0024 17.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|304314137|ref|YP_003849284.1| - 7.4e-08 32.5 0.0 0.0092 15.9 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|304314137|ref|YP_003849284.1| - 0.00077 19.4 0.0 0.011 15.7 0.0 2.2 2 1 0 2 2 2 1 Flavodoxin FMN_red PF03358.10 gi|304314137|ref|YP_003849284.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 NADPH-dependent FMN reductase Methyltransf_11 PF08241.7 gi|304314138|ref|YP_003849285.1| - 5e-06 26.9 0.1 1.7e-05 25.2 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|304314138|ref|YP_003849285.1| - 0.023 15.0 0.1 0.046 14.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain UDPGT PF00201.13 gi|304314138|ref|YP_003849285.1| - 0.08 11.4 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 UDP-glucoronosyl and UDP-glucosyl transferase DEAD_assoc PF08494.6 gi|304314139|ref|YP_003849286.1| - 1.9e-59 200.5 0.2 2.6e-59 200.0 0.1 1.2 1 0 0 1 1 1 1 DEAD/H associated Ubiq_cyt_C_chap PF03981.7 gi|304314139|ref|YP_003849286.1| - 0.015 15.1 0.2 0.074 12.9 0.1 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone DEAD PF00270.24 gi|304314140|ref|YP_003849287.1| - 1.3e-30 106.0 0.0 3.7e-30 104.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|304314140|ref|YP_003849287.1| - 9.6e-14 51.0 0.0 4e-13 49.0 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|304314140|ref|YP_003849287.1| - 1.9e-09 37.6 0.0 4.9e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|304314140|ref|YP_003849287.1| - 0.0013 17.6 0.0 0.029 13.2 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein SNF2_N PF00176.18 gi|304314140|ref|YP_003849287.1| - 0.0069 15.2 0.0 0.02 13.7 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF1424 PF07232.6 gi|304314140|ref|YP_003849287.1| - 0.021 13.6 0.0 0.035 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative rep protein (DUF1424) Metallophos_2 PF12850.2 gi|304314141|ref|YP_003849288.1| - 5e-07 29.6 0.1 7e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|304314141|ref|YP_003849288.1| - 3.3e-05 23.3 0.1 0.00025 20.5 0.0 2.0 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase UbiA PF01040.13 gi|304314142|ref|YP_003849289.1| - 5e-29 101.2 18.4 6.7e-29 100.8 12.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family HEAT_2 PF13646.1 gi|304314143|ref|YP_003849290.1| - 5.7e-33 113.0 0.4 1.3e-18 67.0 0.0 2.8 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|304314143|ref|YP_003849290.1| - 1.4e-19 68.5 0.0 3.8e-06 26.8 0.0 4.8 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|304314143|ref|YP_003849290.1| - 1.1e-15 56.1 0.0 0.00011 22.0 0.0 4.3 4 0 0 4 4 4 3 HEAT repeat HEAT_EZ PF13513.1 gi|304314143|ref|YP_003849290.1| - 7.8e-08 32.5 0.2 0.017 15.6 0.1 4.1 2 2 2 4 4 4 3 HEAT-like repeat Amino_oxidase PF01593.19 gi|304314144|ref|YP_003849291.1| - 1.6e-34 119.7 0.0 1.9e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|304314144|ref|YP_003849291.1| - 7.3e-17 61.3 0.0 3.8e-08 32.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|304314144|ref|YP_003849291.1| - 1.3e-15 57.1 0.2 3.1e-15 55.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|304314144|ref|YP_003849291.1| - 1.5e-08 33.9 1.6 1.3e-07 30.8 1.0 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|304314144|ref|YP_003849291.1| - 6.9e-07 29.5 3.5 0.00013 22.2 0.7 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|304314144|ref|YP_003849291.1| - 7e-06 25.3 0.0 2.5e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|304314144|ref|YP_003849291.1| - 7.9e-06 25.8 1.9 2.6e-05 24.1 1.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|304314144|ref|YP_003849291.1| - 9.2e-06 24.3 0.1 0.00014 20.4 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|304314144|ref|YP_003849291.1| - 1.5e-05 24.1 2.7 2.5e-05 23.4 1.9 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|304314144|ref|YP_003849291.1| - 3e-05 23.2 3.7 3.3e-05 23.1 1.0 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|304314144|ref|YP_003849291.1| - 0.00011 22.3 0.5 0.0014 18.7 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|304314144|ref|YP_003849291.1| - 0.00014 21.2 0.1 0.0014 18.0 0.1 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|304314144|ref|YP_003849291.1| - 0.0051 15.7 1.9 0.029 13.2 1.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A TrkA_N PF02254.13 gi|304314144|ref|YP_003849291.1| - 0.019 14.9 1.1 0.14 12.1 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.9 gi|304314144|ref|YP_003849291.1| - 0.023 13.3 0.9 0.034 12.7 0.6 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|304314144|ref|YP_003849291.1| - 0.033 13.9 4.4 0.079 12.7 0.6 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|304314144|ref|YP_003849291.1| - 0.051 13.2 0.9 0.1 12.2 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|304314144|ref|YP_003849291.1| - 0.079 11.8 0.5 0.15 10.9 0.3 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|304314144|ref|YP_003849291.1| - 0.09 12.3 2.4 0.094 12.2 0.3 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|304314144|ref|YP_003849291.1| - 0.81 9.1 2.1 0.97 8.8 0.5 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA SQS_PSY PF00494.14 gi|304314145|ref|YP_003849292.1| - 3.3e-50 170.8 0.6 3.9e-50 170.6 0.4 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase UbiA PF01040.13 gi|304314146|ref|YP_003849293.1| - 4.3e-24 85.1 15.9 6.2e-24 84.6 11.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|304314147|ref|YP_003849294.1| - 1e-55 188.4 16.4 1.4e-55 188.0 11.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) TraL PF07178.6 gi|304314147|ref|YP_003849294.1| - 4.6 7.3 8.4 0.18 11.8 0.9 2.5 2 2 0 2 2 2 0 TraL protein DUF872 PF05915.7 gi|304314147|ref|YP_003849294.1| - 5.3 6.9 7.7 1.1 9.1 1.6 2.4 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) CN_hydrolase PF00795.17 gi|304314148|ref|YP_003849295.1| - 1.8e-28 99.1 0.0 2.4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1081 PF06448.6 gi|304314148|ref|YP_003849295.1| - 0.08 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) DUF204 PF02659.10 gi|304314149|ref|YP_003849296.1| - 4.4e-34 116.4 21.2 8.8e-18 64.1 5.4 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF DUF808 PF05661.7 gi|304314149|ref|YP_003849296.1| - 0.92 8.2 6.0 1.6 7.4 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF808) Trypsin_2 PF13365.1 gi|304314150|ref|YP_003849297.1| - 2.1e-21 76.1 1.1 3.3e-21 75.4 0.8 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|304314150|ref|YP_003849297.1| - 5.3e-11 42.5 0.2 1.1e-10 41.4 0.1 1.5 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|304314150|ref|YP_003849297.1| - 4.5e-10 39.2 0.1 9.5e-10 38.2 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|304314150|ref|YP_003849297.1| - 0.00031 20.8 0.2 0.00071 19.7 0.1 1.6 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|304314150|ref|YP_003849297.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S32 PF05579.8 gi|304314150|ref|YP_003849297.1| - 0.056 12.4 1.8 2.4 7.0 0.0 2.2 1 1 1 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Tmpp129 PF10272.4 gi|304314150|ref|YP_003849297.1| - 0.09 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor Peptidase_S46 PF10459.4 gi|304314150|ref|YP_003849297.1| - 0.38 9.1 3.2 3.8 5.7 0.2 2.1 2 0 0 2 2 2 0 Peptidase S46 AAA_5 PF07728.9 gi|304314151|ref|YP_003849298.1| - 7e-19 67.9 0.0 1.7e-18 66.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|304314151|ref|YP_003849298.1| - 1.6e-13 50.3 0.0 2.1e-11 43.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|304314151|ref|YP_003849298.1| - 6.7e-13 48.9 0.2 4.2e-12 46.4 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|304314151|ref|YP_003849298.1| - 1.3e-08 35.0 0.0 1.1e-07 31.9 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.9 gi|304314151|ref|YP_003849298.1| - 1.2e-07 31.7 0.0 2.6e-07 30.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|304314151|ref|YP_003849298.1| - 1.2e-06 28.6 0.1 5.5e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314151|ref|YP_003849298.1| - 5.1e-06 26.1 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|304314151|ref|YP_003849298.1| - 1.2e-05 25.1 0.1 0.00016 21.5 0.1 2.5 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|304314151|ref|YP_003849298.1| - 1.4e-05 25.8 0.1 3.9e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|304314151|ref|YP_003849298.1| - 3.5e-05 24.1 0.6 0.00011 22.5 0.1 2.1 2 1 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|304314151|ref|YP_003849298.1| - 0.00018 21.1 0.6 0.0038 16.9 0.2 2.7 1 1 1 2 2 2 1 NACHT domain Sigma54_activat PF00158.21 gi|304314151|ref|YP_003849298.1| - 0.00035 20.0 0.1 0.22 10.9 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|304314151|ref|YP_003849298.1| - 0.00043 19.5 0.1 0.0045 16.1 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|304314151|ref|YP_003849298.1| - 0.00074 18.6 0.0 0.27 10.2 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|304314151|ref|YP_003849298.1| - 0.002 17.9 0.0 0.0034 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|304314151|ref|YP_003849298.1| - 0.0024 16.6 0.0 0.024 13.3 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus NTPase_1 PF03266.10 gi|304314151|ref|YP_003849298.1| - 0.0062 16.2 0.0 0.18 11.4 0.0 2.4 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|304314151|ref|YP_003849298.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|304314151|ref|YP_003849298.1| - 0.026 14.1 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MCM PF00493.18 gi|304314151|ref|YP_003849298.1| - 0.026 13.3 0.0 0.11 11.2 0.0 1.9 2 0 0 2 2 2 0 MCM2/3/5 family DUF2075 PF09848.4 gi|304314151|ref|YP_003849298.1| - 0.029 13.3 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|304314151|ref|YP_003849298.1| - 0.037 13.5 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|304314151|ref|YP_003849298.1| - 0.042 13.9 0.1 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|304314151|ref|YP_003849298.1| - 0.046 12.8 0.0 0.084 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|304314151|ref|YP_003849298.1| - 0.059 12.7 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain GvpD PF07088.6 gi|304314151|ref|YP_003849298.1| - 0.07 11.4 0.0 0.097 10.9 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein SKI PF01202.17 gi|304314151|ref|YP_003849298.1| - 0.092 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate kinase IstB_IS21 PF01695.12 gi|304314151|ref|YP_003849298.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|304314151|ref|YP_003849298.1| - 0.12 11.4 0.0 0.31 10.1 0.0 1.6 1 0 0 1 1 1 0 KaiC RNA_helicase PF00910.17 gi|304314151|ref|YP_003849298.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase VWA_CoxE PF05762.9 gi|304314152|ref|YP_003849299.1| - 2.4e-66 223.0 0.3 3.2e-66 222.6 0.2 1.1 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein 7TMR-HDED PF07697.6 gi|304314152|ref|YP_003849299.1| - 0.0087 15.8 0.1 0.017 14.8 0.1 1.5 1 1 0 1 1 1 1 7TM-HD extracellular DUF91 PF01939.11 gi|304314154|ref|YP_003849301.1| - 5.3e-102 339.8 0.0 6.4e-102 339.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1703 PF08011.6 gi|304314154|ref|YP_003849301.1| - 0.0063 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) HSDR_N PF04313.9 gi|304314154|ref|YP_003849301.1| - 0.031 14.0 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_4 PF14281.1 gi|304314154|ref|YP_003849301.1| - 0.056 13.3 0.0 0.07 12.9 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Peptidase_M48 PF01435.13 gi|304314155|ref|YP_003849302.1| - 1.3e-18 67.3 0.0 3.1e-18 66.1 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Fer4_15 PF13459.1 gi|304314157|ref|YP_003849304.1| - 8.9e-14 51.8 7.5 1.1e-13 51.5 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|304314157|ref|YP_003849304.1| - 1.9e-10 40.9 6.9 2.4e-10 40.6 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304314157|ref|YP_003849304.1| - 3e-05 23.4 2.5 3e-05 23.4 1.8 2.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314157|ref|YP_003849304.1| - 3.2e-05 23.5 1.2 3.2e-05 23.5 0.8 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314157|ref|YP_003849304.1| - 0.00011 21.8 2.1 0.00011 21.8 1.5 2.2 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314157|ref|YP_003849304.1| - 0.0021 17.8 7.4 0.0039 16.9 5.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314157|ref|YP_003849304.1| - 0.0022 18.3 2.3 0.0022 18.3 1.6 2.2 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314157|ref|YP_003849304.1| - 0.0024 18.2 0.7 0.0024 18.2 0.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314157|ref|YP_003849304.1| - 0.0048 17.1 8.7 0.024 14.8 6.2 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|304314157|ref|YP_003849304.1| - 0.012 15.3 5.0 0.025 14.3 3.5 1.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|304314157|ref|YP_003849304.1| - 0.025 14.5 7.5 0.095 12.7 5.2 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314157|ref|YP_003849304.1| - 0.058 13.9 2.7 0.058 13.9 1.9 3.1 3 2 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314157|ref|YP_003849304.1| - 0.57 10.9 10.3 5.9 7.7 7.4 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|304314157|ref|YP_003849304.1| - 0.63 9.9 13.3 2.4 8.0 9.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314157|ref|YP_003849304.1| - 2.7 8.4 9.5 0.18 12.2 2.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Abhydrolase_1 PF00561.15 gi|304314158|ref|YP_003849305.1| - 1.1e-17 64.3 0.0 6.1e-16 58.6 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|304314158|ref|YP_003849305.1| - 1.4e-16 61.1 0.0 1.7e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|304314158|ref|YP_003849305.1| - 1.3e-05 24.9 0.0 3.7e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|304314158|ref|YP_003849305.1| - 6.2e-05 22.5 0.0 9.7e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Putative esterase DUF915 PF06028.6 gi|304314158|ref|YP_003849305.1| - 0.0016 17.6 0.0 0.096 11.7 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Nuc_recep-AF1 PF11825.3 gi|304314158|ref|YP_003849305.1| - 0.086 12.7 0.2 0.38 10.6 0.1 1.9 2 0 0 2 2 2 0 Nuclear/hormone receptor activator site AF-1 DUF2048 PF09752.4 gi|304314158|ref|YP_003849305.1| - 0.14 11.0 0.0 3.9 6.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) MotCF PF09158.5 gi|304314160|ref|YP_003849307.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage T4 MotA, C-terminal DUF504 PF04457.7 gi|304314160|ref|YP_003849307.1| - 0.058 13.5 0.1 0.16 12.1 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF504) HIT PF01230.18 gi|304314161|ref|YP_003849308.1| - 0.001 19.5 0.0 0.0015 19.0 0.0 1.2 1 0 0 1 1 1 1 HIT domain Rubrerythrin PF02915.12 gi|304314162|ref|YP_003849309.1| - 2.7e-12 47.1 0.8 3.5e-12 46.8 0.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|304314162|ref|YP_003849309.1| - 1.3e-11 44.3 1.2 1.6e-11 44.1 0.9 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.8 gi|304314162|ref|YP_003849309.1| - 8.1e-07 28.6 0.1 0.022 14.2 0.0 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.7 gi|304314162|ref|YP_003849309.1| - 6.5e-05 21.8 0.8 0.0079 14.9 0.1 2.0 2 0 0 2 2 2 2 Manganese containing catalase DUF2383 PF09537.5 gi|304314162|ref|YP_003849309.1| - 8.7e-05 22.7 0.2 0.0027 17.9 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin-like PF12902.2 gi|304314162|ref|YP_003849309.1| - 0.00017 21.2 0.1 0.00048 19.7 0.0 1.6 1 1 0 1 1 1 1 Ferritin-like Ferritin_2 PF13668.1 gi|304314162|ref|YP_003849309.1| - 0.0063 16.4 0.0 0.058 13.3 0.0 2.0 1 1 0 1 1 1 1 Ferritin-like domain Hydantoinase_B PF02538.9 gi|304314162|ref|YP_003849309.1| - 0.026 12.7 0.3 0.033 12.4 0.2 1.1 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase DUF3231 PF11553.3 gi|304314162|ref|YP_003849309.1| - 0.091 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) DUF362 PF04015.7 gi|304314163|ref|YP_003849310.1| - 7.7e-27 94.1 0.1 1.1e-26 93.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|304314163|ref|YP_003849310.1| - 3.9e-10 38.8 14.5 3.4e-05 23.2 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314163|ref|YP_003849310.1| - 2.9e-08 33.6 4.4 0.0013 18.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314163|ref|YP_003849310.1| - 3.2e-08 33.8 11.4 1.1e-07 32.1 8.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314163|ref|YP_003849310.1| - 1.1e-07 32.0 11.2 0.0014 18.8 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314163|ref|YP_003849310.1| - 7.5e-07 28.8 24.4 2.6e-05 23.9 10.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314163|ref|YP_003849310.1| - 1.6e-06 28.7 8.0 0.013 16.2 2.5 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314163|ref|YP_003849310.1| - 2e-06 27.6 12.9 0.0017 18.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314163|ref|YP_003849310.1| - 1.2e-05 24.9 15.2 0.0047 16.7 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314163|ref|YP_003849310.1| - 0.00017 21.2 16.1 0.015 15.1 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314163|ref|YP_003849310.1| - 0.0002 21.1 13.0 0.041 13.7 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314163|ref|YP_003849310.1| - 0.00054 20.4 8.5 0.0077 16.7 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304314163|ref|YP_003849310.1| - 0.001 18.9 2.8 0.0018 18.1 2.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314163|ref|YP_003849310.1| - 0.0039 17.5 10.1 0.021 15.2 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304314163|ref|YP_003849310.1| - 0.01 16.1 16.8 0.25 11.7 1.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314163|ref|YP_003849310.1| - 0.012 16.0 12.0 0.16 12.4 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314163|ref|YP_003849310.1| - 0.018 15.5 18.2 0.086 13.4 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NadA PF02445.11 gi|304314164|ref|YP_003849311.1| - 1.3e-113 378.7 1.1 1.5e-113 378.5 0.8 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sortase PF04203.8 gi|304314166|ref|YP_003849313.1| - 7.5e-18 64.3 0.0 9.7e-18 64.0 0.0 1.1 1 0 0 1 1 1 1 Sortase family MS_channel PF00924.13 gi|304314167|ref|YP_003849314.1| - 8.5e-58 195.0 0.8 1.3e-57 194.4 0.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel MatC_N PF07158.6 gi|304314167|ref|YP_003849314.1| - 0.071 12.9 0.3 0.071 12.9 0.2 1.6 2 0 0 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus Lactamase_B_2 PF12706.2 gi|304314168|ref|YP_003849315.1| - 1.4e-32 112.7 0.0 2e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|304314168|ref|YP_003849315.1| - 4e-18 65.7 0.1 4.6e-16 59.0 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|304314168|ref|YP_003849315.1| - 1.4e-06 27.7 0.0 2.7e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.10 gi|304314168|ref|YP_003849315.1| - 0.13 11.1 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II QRPTase_C PF01729.14 gi|304314169|ref|YP_003849316.1| - 6.2e-63 211.3 0.5 8.2e-63 210.9 0.4 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|304314169|ref|YP_003849316.1| - 4.7e-22 77.6 0.3 8.5e-22 76.7 0.2 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|304314169|ref|YP_003849316.1| - 0.029 13.4 0.1 0.082 11.9 0.0 1.8 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|304314169|ref|YP_003849316.1| - 0.053 12.6 0.1 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI CBFD_NFYB_HMF PF00808.18 gi|304314170|ref|YP_003849317.1| - 0.00018 21.5 0.4 0.00068 19.6 0.0 2.1 3 0 0 3 3 3 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF4276 PF14103.1 gi|304314170|ref|YP_003849317.1| - 0.011 15.6 0.2 0.014 15.2 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4276) DUF234 PF03008.9 gi|304314170|ref|YP_003849317.1| - 0.013 15.5 0.6 0.039 14.0 0.1 1.8 1 1 1 2 2 2 0 Archaea bacterial proteins of unknown function DUF2312 PF10073.4 gi|304314170|ref|YP_003849317.1| - 0.022 14.1 0.4 0.022 14.1 0.3 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) TUG-UBL1 PF11470.3 gi|304314170|ref|YP_003849317.1| - 0.032 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 GLUT4 regulating protein TUG Nro1 PF12753.2 gi|304314170|ref|YP_003849317.1| - 0.034 13.0 2.8 0.037 12.9 1.9 1.0 1 0 0 1 1 1 0 Nuclear pore complex subunit Nro1 DUF3456 PF11938.3 gi|304314170|ref|YP_003849317.1| - 0.053 13.5 1.6 0.071 13.0 0.8 1.5 1 1 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP DUF1249 PF06853.7 gi|304314170|ref|YP_003849317.1| - 0.058 13.0 0.1 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) MCC-bdg_PDZ PF10506.4 gi|304314170|ref|YP_003849317.1| - 0.53 10.1 2.9 0.84 9.5 0.1 2.4 2 1 1 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-ZPR1 PF03367.8 gi|304314171|ref|YP_003849318.1| - 2.6e-51 172.9 0.6 3.2e-51 172.7 0.4 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain UPF0547 PF10571.4 gi|304314171|ref|YP_003849318.1| - 0.22 11.2 2.2 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 3H PF02829.9 gi|304314172|ref|YP_003849319.1| - 5e-25 87.3 0.1 1.6e-24 85.7 0.0 1.9 2 0 0 2 2 2 1 3H domain AAA_17 PF13207.1 gi|304314172|ref|YP_003849319.1| - 5.7e-12 46.5 1.6 1.2e-10 42.2 0.0 2.6 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304314172|ref|YP_003849319.1| - 1.1e-08 35.4 3.1 2.3e-08 34.3 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|304314172|ref|YP_003849319.1| - 0.00057 19.7 0.0 0.011 15.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|304314172|ref|YP_003849319.1| - 0.0085 16.0 0.1 0.2 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|304314172|ref|YP_003849319.1| - 0.015 14.3 0.2 0.069 12.2 0.1 2.2 1 1 1 2 2 2 0 Zeta toxin MarR_2 PF12802.2 gi|304314172|ref|YP_003849319.1| - 0.042 13.5 0.0 0.63 9.7 0.0 2.4 2 0 0 2 2 2 0 MarR family AAA_22 PF13401.1 gi|304314172|ref|YP_003849319.1| - 0.046 13.8 0.0 0.53 10.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain SKI PF01202.17 gi|304314172|ref|YP_003849319.1| - 0.05 13.4 0.1 0.31 10.8 0.0 2.3 2 1 0 2 2 2 0 Shikimate kinase AAA_16 PF13191.1 gi|304314172|ref|YP_003849319.1| - 0.055 13.4 0.4 0.36 10.8 0.1 2.3 2 2 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|304314172|ref|YP_003849319.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MarR PF01047.17 gi|304314172|ref|YP_003849319.1| - 0.068 12.8 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 MarR family Robl_LC7 PF03259.12 gi|304314173|ref|YP_003849320.1| - 1.7e-19 69.1 0.2 2.2e-19 68.7 0.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF1611 PF07755.6 gi|304314174|ref|YP_003849321.1| - 8.9e-73 244.5 0.0 1.1e-72 244.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) GFO_IDH_MocA PF01408.17 gi|304314174|ref|YP_003849321.1| - 0.006 17.0 0.0 0.04 14.4 0.0 2.1 1 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|304314174|ref|YP_003849321.1| - 0.063 13.7 0.0 0.77 10.3 0.0 2.5 2 0 0 2 2 2 0 CoA binding domain DUF552 PF04472.7 gi|304314175|ref|YP_003849322.1| - 4.3e-10 39.3 0.5 6.3e-10 38.8 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Peptidase_C3 PF00548.15 gi|304314175|ref|YP_003849322.1| - 0.075 12.8 0.1 0.095 12.5 0.0 1.1 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) DUF2226 PF09987.4 gi|304314176|ref|YP_003849323.1| - 5.4e-12 45.4 18.7 8.5e-12 44.8 13.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) DUF4388 PF14332.1 gi|304314176|ref|YP_003849323.1| - 2.6e-05 24.0 0.0 8.2e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) MCPVI PF02993.9 gi|304314176|ref|YP_003849323.1| - 0.32 11.1 5.3 0.56 10.3 3.0 1.7 2 0 0 2 2 2 0 Minor capsid protein VI TP53IP5 PF15331.1 gi|304314176|ref|YP_003849323.1| - 0.56 10.0 2.8 7.8 6.3 0.0 2.1 1 1 1 2 2 2 0 Cellular tumour antigen p53-inducible 5 CbiA PF01656.18 gi|304314177|ref|YP_003849324.1| - 1.9e-35 122.0 2.8 2.9e-35 121.4 1.9 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|304314177|ref|YP_003849324.1| - 4e-16 59.3 0.0 5.5e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|304314177|ref|YP_003849324.1| - 2e-13 50.1 0.8 5.9e-13 48.6 0.5 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|304314177|ref|YP_003849324.1| - 1.4e-09 37.7 0.1 2.9e-09 36.6 0.1 1.4 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|304314177|ref|YP_003849324.1| - 8.5e-09 34.8 2.9 3.8e-08 32.7 0.4 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|304314177|ref|YP_003849324.1| - 2.1e-08 33.5 1.1 8.7e-08 31.5 0.7 1.8 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|304314177|ref|YP_003849324.1| - 3.7e-08 33.1 0.1 7.3e-08 32.1 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|304314177|ref|YP_003849324.1| - 8.8e-08 31.9 6.0 3.6e-07 30.0 0.2 2.3 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|304314177|ref|YP_003849324.1| - 0.0012 17.9 2.1 0.0016 17.5 0.1 1.9 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|304314177|ref|YP_003849324.1| - 0.011 15.0 1.0 0.018 14.4 0.6 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|304314177|ref|YP_003849324.1| - 0.012 15.2 0.2 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|304314177|ref|YP_003849324.1| - 0.029 13.9 0.2 0.036 13.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|304314177|ref|YP_003849324.1| - 0.043 14.6 0.4 0.11 13.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304314177|ref|YP_003849324.1| - 0.045 13.1 0.2 0.071 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|304314177|ref|YP_003849324.1| - 0.072 12.5 1.2 0.11 11.8 0.2 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|304314177|ref|YP_003849324.1| - 0.23 10.2 3.8 0.46 9.2 2.6 1.7 1 1 0 1 1 1 0 ArgK protein PfkB PF00294.19 gi|304314178|ref|YP_003849325.1| - 1.7e-56 191.6 0.0 2e-56 191.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|304314178|ref|YP_003849325.1| - 0.0016 17.6 0.0 0.0021 17.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TatD_DNase PF01026.16 gi|304314179|ref|YP_003849326.1| - 0.0042 16.3 0.0 0.0046 16.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Maf_N PF08383.6 gi|304314179|ref|YP_003849326.1| - 6.6 6.3 7.3 0.24 10.9 0.6 2.0 2 1 0 2 2 2 0 Maf N-terminal region TatD_DNase PF01026.16 gi|304314180|ref|YP_003849327.1| - 6.9e-20 71.3 0.0 7.5e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase PTE PF02126.13 gi|304314180|ref|YP_003849327.1| - 0.067 12.2 0.0 0.094 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphotriesterase family Amidohydro_2 PF04909.9 gi|304314180|ref|YP_003849327.1| - 0.067 12.7 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase DUF1724 PF08350.5 gi|304314181|ref|YP_003849328.1| - 5.8e-23 80.2 0.1 1.2e-22 79.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_34 PF13601.1 gi|304314181|ref|YP_003849328.1| - 0.0067 16.4 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|304314181|ref|YP_003849328.1| - 0.0098 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|304314181|ref|YP_003849328.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family STAS PF01740.16 gi|304314181|ref|YP_003849328.1| - 0.026 13.9 0.0 0.076 12.4 0.0 1.8 1 1 1 2 2 2 0 STAS domain TrmB PF01978.14 gi|304314181|ref|YP_003849328.1| - 0.079 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1724 PF08350.5 gi|304314182|ref|YP_003849329.1| - 6.8e-10 38.3 0.1 2.7e-09 36.4 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HxlR PF01638.12 gi|304314182|ref|YP_003849329.1| - 0.00023 20.7 0.1 0.00049 19.6 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|304314182|ref|YP_003849329.1| - 0.0023 17.5 0.3 0.0074 15.9 0.2 1.8 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|304314182|ref|YP_003849329.1| - 0.0062 16.1 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|304314182|ref|YP_003849329.1| - 0.02 14.6 0.3 0.043 13.5 0.2 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|304314182|ref|YP_003849329.1| - 0.028 14.7 0.3 0.059 13.6 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|304314182|ref|YP_003849329.1| - 0.029 14.1 0.1 0.077 12.8 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix tRNA-synt_2b PF00587.20 gi|304314183|ref|YP_003849330.1| - 3.9e-60 202.3 0.0 5.8e-60 201.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|304314183|ref|YP_003849330.1| - 1e-22 79.8 0.5 3.1e-22 78.3 0.1 2.1 2 0 0 2 2 2 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|304314183|ref|YP_003849330.1| - 0.023 14.6 0.1 0.37 10.7 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Choline_kin_N PF04428.9 gi|304314183|ref|YP_003849330.1| - 0.11 11.9 0.0 1.7 8.2 0.0 2.5 1 1 0 1 1 1 0 Choline kinase N terminus DNA_RNApol_7kD PF03604.8 gi|304314183|ref|YP_003849330.1| - 0.42 10.1 2.2 0.68 9.4 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DCD PF06559.6 gi|304314184|ref|YP_003849331.1| - 2.5e-18 65.6 0.0 2.1e-09 36.2 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|304314184|ref|YP_003849331.1| - 2e-13 49.9 0.0 2.8e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 dUTPase DUF1512 PF07431.7 gi|304314185|ref|YP_003849332.1| - 1e-90 304.0 3.7 1.2e-90 303.8 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) DUF3215 PF11503.3 gi|304314185|ref|YP_003849332.1| - 0.11 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3215) DUF1512 PF07431.7 gi|304314186|ref|YP_003849333.1| - 2.1e-17 62.8 0.0 2.3e-17 62.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) SpoU_methylase PF00588.14 gi|304314187|ref|YP_003849334.1| - 1.8e-32 112.1 0.0 2.4e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family CCG PF02754.11 gi|304314188|ref|YP_003849335.1| - 2.4e-40 136.4 6.8 1.3e-21 76.3 0.1 2.8 3 0 0 3 3 2 2 Cysteine-rich domain Fer2_3 PF13085.1 gi|304314188|ref|YP_003849335.1| - 5.1e-25 87.4 0.1 5.1e-25 87.4 0.0 2.3 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|304314188|ref|YP_003849335.1| - 1.3e-10 41.1 7.1 1.3e-10 41.1 5.0 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314188|ref|YP_003849335.1| - 4.4e-07 29.5 8.7 4.4e-07 29.5 6.0 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314188|ref|YP_003849335.1| - 5.5e-07 29.8 7.7 5.5e-07 29.8 5.3 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|304314188|ref|YP_003849335.1| - 1.6e-06 27.7 0.2 1.6e-06 27.7 0.1 3.0 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|304314188|ref|YP_003849335.1| - 1.9e-06 28.0 13.9 0.0017 18.5 1.0 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314188|ref|YP_003849335.1| - 3.2e-05 24.2 13.8 0.0081 16.5 0.3 4.1 6 0 0 6 6 6 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314188|ref|YP_003849335.1| - 0.00043 20.5 10.3 0.00043 20.5 7.2 3.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|304314188|ref|YP_003849335.1| - 0.0019 17.9 0.1 0.005 16.6 0.1 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.1 gi|304314188|ref|YP_003849335.1| - 0.0028 18.3 15.3 0.01 16.5 1.9 3.7 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314188|ref|YP_003849335.1| - 0.074 13.4 0.9 0.074 13.4 0.6 4.5 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314188|ref|YP_003849335.1| - 0.96 10.0 12.6 0.62 10.6 1.4 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|304314188|ref|YP_003849335.1| - 4.2 7.8 10.5 18 5.8 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|304314188|ref|YP_003849335.1| - 4.3 7.2 18.5 0.63 9.9 0.3 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314188|ref|YP_003849335.1| - 5.4 7.1 31.1 0.063 13.2 0.9 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain TPP_enzyme_C PF02775.16 gi|304314189|ref|YP_003849336.1| - 5.4e-26 90.9 0.0 1.1e-25 90.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|304314189|ref|YP_003849336.1| - 4.6e-15 55.7 0.2 7.4e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_10 PF13237.1 gi|304314189|ref|YP_003849336.1| - 1.2e-05 24.9 8.6 2.9e-05 23.7 5.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314189|ref|YP_003849336.1| - 5.8e-05 22.7 16.9 0.0055 16.5 1.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|304314189|ref|YP_003849336.1| - 0.0002 20.8 16.8 0.00027 20.3 2.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|304314189|ref|YP_003849336.1| - 0.00032 20.2 1.3 0.0017 17.9 0.2 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.2 gi|304314189|ref|YP_003849336.1| - 0.00047 19.9 10.9 0.042 13.7 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314189|ref|YP_003849336.1| - 0.0035 17.6 13.1 0.029 14.7 6.2 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314189|ref|YP_003849336.1| - 0.0047 17.4 7.7 0.85 10.2 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|304314189|ref|YP_003849336.1| - 0.016 15.0 8.4 0.036 13.9 5.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314189|ref|YP_003849336.1| - 0.023 15.4 2.3 0.023 15.4 1.6 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|304314189|ref|YP_003849336.1| - 0.12 12.6 10.8 0.4 10.9 7.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304314189|ref|YP_003849336.1| - 0.23 11.3 5.5 0.14 12.0 2.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|304314190|ref|YP_003849337.1| - 1.5e-40 138.9 0.1 1.7e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ACT PF01842.20 gi|304314191|ref|YP_003849338.1| - 2.1e-15 55.8 0.9 3.8e-08 32.6 0.1 2.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|304314191|ref|YP_003849338.1| - 1.8e-06 28.1 0.4 0.0061 16.8 0.1 2.3 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|304314191|ref|YP_003849338.1| - 8.8e-05 21.9 0.0 0.71 9.4 0.0 3.2 2 1 0 2 2 2 2 ACT domain Glyoxalase_4 PF13669.1 gi|304314191|ref|YP_003849338.1| - 0.014 15.3 0.0 0.13 12.2 0.0 2.3 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r1_1 PF03979.9 gi|304314191|ref|YP_003849338.1| - 0.028 14.3 0.5 1.2 9.1 0.0 2.9 2 1 0 3 3 3 0 Sigma-70 factor, region 1.1 ACT_5 PF13710.1 gi|304314191|ref|YP_003849338.1| - 0.089 12.6 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 ACT domain Glyoxalase_2 PF12681.2 gi|304314191|ref|YP_003849338.1| - 0.12 12.9 0.1 1.4 9.5 0.1 2.1 1 1 1 2 2 2 0 Glyoxalase-like domain AMP-binding_C_2 PF14535.1 gi|304314192|ref|YP_003849339.1| - 1.8e-33 114.4 0.5 8.3e-33 112.3 0.2 2.2 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|304314192|ref|YP_003849339.1| - 4.2e-21 74.8 0.3 1.2e-20 73.3 0.2 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|304314192|ref|YP_003849339.1| - 0.00026 19.7 0.0 0.00077 18.2 0.0 1.7 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE Glyoxalase_3 PF13468.1 gi|304314192|ref|YP_003849339.1| - 0.054 13.3 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Glyoxalase-like domain SSF PF00474.12 gi|304314193|ref|YP_003849340.1| - 9.1e-57 192.5 41.6 1.2e-56 192.1 28.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family FixP_N PF14715.1 gi|304314194|ref|YP_003849341.1| - 0.031 13.6 1.2 0.044 13.1 0.9 1.2 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP NMN_transporter PF04973.7 gi|304314194|ref|YP_003849341.1| - 0.05 13.0 0.1 0.059 12.8 0.1 1.1 1 0 0 1 1 1 0 Nicotinamide mononucleotide transporter HIG_1_N PF04588.8 gi|304314194|ref|YP_003849341.1| - 0.063 13.0 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Hypoxia induced protein conserved region CcmD PF04995.9 gi|304314194|ref|YP_003849341.1| - 0.74 9.5 2.8 1.1 9.0 1.9 1.3 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) ABC2_membrane_3 PF12698.2 gi|304314195|ref|YP_003849342.1| - 3.1e-30 105.3 28.4 3.4e-15 55.9 0.2 2.2 1 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|304314195|ref|YP_003849342.1| - 6e-09 35.3 14.1 6e-09 35.3 9.8 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ApoLp-III PF07464.6 gi|304314195|ref|YP_003849342.1| - 0.0003 20.8 4.3 0.58 10.1 0.0 3.5 1 1 2 3 3 3 2 Apolipophorin-III precursor (apoLp-III) TACC PF05010.9 gi|304314195|ref|YP_003849342.1| - 0.016 15.0 0.6 0.026 14.2 0.4 1.4 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) FliJ PF02050.11 gi|304314195|ref|YP_003849342.1| - 0.044 13.8 0.7 2.8 8.0 0.0 3.0 3 1 1 4 4 3 0 Flagellar FliJ protein TPR_MLP1_2 PF07926.7 gi|304314195|ref|YP_003849342.1| - 0.044 13.5 3.5 0.99 9.1 0.1 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein PilJ PF13675.1 gi|304314195|ref|YP_003849342.1| - 0.049 13.9 1.2 0.56 10.5 0.1 2.7 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF869 PF05911.6 gi|304314195|ref|YP_003849342.1| - 0.1 10.8 5.3 2.2 6.4 0.9 2.1 1 1 0 2 2 2 0 Plant protein of unknown function (DUF869) Atg14 PF10186.4 gi|304314195|ref|YP_003849342.1| - 0.14 11.0 1.5 0.73 8.7 0.0 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 NIT PF08376.5 gi|304314195|ref|YP_003849342.1| - 0.15 11.5 0.8 0.53 9.7 0.1 2.0 2 0 0 2 2 2 0 Nitrate and nitrite sensing Reo_sigmaC PF04582.7 gi|304314195|ref|YP_003849342.1| - 0.16 11.1 4.9 2.4 7.2 0.2 2.3 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|304314195|ref|YP_003849342.1| - 0.24 11.1 5.0 6.3 6.5 0.2 2.7 1 1 2 3 3 3 0 Laminin Domain II DUF1664 PF07889.7 gi|304314195|ref|YP_003849342.1| - 0.24 11.2 2.5 13 5.5 0.0 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|304314195|ref|YP_003849342.1| - 0.29 10.6 4.5 1.9 8.0 0.4 2.5 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Vps51 PF08700.6 gi|304314195|ref|YP_003849342.1| - 0.68 9.8 6.3 23 4.9 0.1 4.0 4 0 0 4 4 4 0 Vps51/Vps67 DUF342 PF03961.8 gi|304314195|ref|YP_003849342.1| - 0.99 7.7 7.1 0.46 8.8 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) PRC PF05239.11 gi|304314196|ref|YP_003849343.1| - 1.7e-13 50.2 4.6 1.8e-13 50.1 3.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pribosyltran PF00156.22 gi|304314197|ref|YP_003849344.1| - 8.4e-14 51.3 2.9 6e-13 48.6 2.0 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|304314197|ref|YP_003849344.1| - 0.1 11.8 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MoCF_biosynth PF00994.19 gi|304314198|ref|YP_003849345.1| - 1.2e-30 105.8 0.0 1.4e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF2117 PF09890.4 gi|304314201|ref|YP_003849348.1| - 6.9e-80 267.2 0.6 8.7e-80 266.9 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|304314201|ref|YP_003849348.1| - 0.00036 19.3 0.5 0.00063 18.6 0.3 1.6 2 0 0 2 2 2 1 ATP-NAD kinase AIRS PF00586.19 gi|304314202|ref|YP_003849349.1| - 1.3e-18 67.0 0.6 4.8e-18 65.2 0.2 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|304314202|ref|YP_003849349.1| - 5.5e-14 52.4 0.0 7.5e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Pro_isomerase PF00160.16 gi|304314203|ref|YP_003849350.1| - 9.7e-06 25.8 0.1 2.8 8.1 0.0 4.6 4 2 0 4 4 4 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF871 PF05913.6 gi|304314203|ref|YP_003849350.1| - 0.0084 14.9 0.0 0.019 13.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF871) Cyclophil_like PF04126.8 gi|304314203|ref|YP_003849350.1| - 0.051 13.1 0.1 0.81 9.2 0.0 2.6 2 0 0 2 2 2 0 Cyclophilin-like ADH_N PF08240.7 gi|304314203|ref|YP_003849350.1| - 0.18 11.5 0.6 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain Glyco_hydro_77 PF02446.12 gi|304314203|ref|YP_003849350.1| - 0.22 10.0 0.0 0.31 9.5 0.0 1.1 1 0 0 1 1 1 0 4-alpha-glucanotransferase DUF2102 PF09875.4 gi|304314204|ref|YP_003849351.1| - 3.5e-40 135.7 0.0 4.5e-40 135.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Not3 PF04065.10 gi|304314204|ref|YP_003849351.1| - 0.04 13.2 0.3 0.058 12.6 0.2 1.2 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component DUF2111 PF09884.4 gi|304314205|ref|YP_003849352.1| - 4e-37 125.8 0.3 5e-37 125.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) GAF_3 PF13492.1 gi|304314205|ref|YP_003849352.1| - 0.14 12.2 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 GAF domain DUF2112 PF09885.4 gi|304314206|ref|YP_003849353.1| - 6e-69 230.2 0.0 6.7e-69 230.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|304314207|ref|YP_003849354.1| - 2.7e-62 210.5 4.8 3.8e-62 210.0 3.3 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|304314207|ref|YP_003849354.1| - 0.0015 18.3 1.2 0.58 10.0 0.0 2.9 3 1 0 3 3 3 2 Cell division protein FtsA MutL PF13941.1 gi|304314207|ref|YP_003849354.1| - 0.0028 16.0 5.8 0.0097 14.2 0.2 2.7 3 0 0 3 3 3 2 MutL protein Hydant_A_N PF05378.8 gi|304314207|ref|YP_003849354.1| - 0.0071 15.8 1.0 0.0071 15.8 0.7 2.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region DUF460 PF04312.8 gi|304314207|ref|YP_003849354.1| - 0.057 12.9 0.0 7.9 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Hydantoinase_A PF01968.13 gi|304314207|ref|YP_003849354.1| - 0.1 11.6 7.2 1.4 7.9 0.2 3.1 2 1 1 3 3 3 0 Hydantoinase/oxoprolinase DUF2113 PF09886.4 gi|304314208|ref|YP_003849355.1| - 2e-60 203.2 0.4 2.3e-60 202.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Radical_SAM PF04055.16 gi|304314209|ref|YP_003849356.1| - 5.9e-22 78.6 0.2 9.9e-22 77.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304314209|ref|YP_003849356.1| - 0.0029 17.7 0.0 0.0076 16.3 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304314209|ref|YP_003849356.1| - 0.0053 16.7 0.1 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_C93 PF06035.6 gi|304314209|ref|YP_003849356.1| - 0.098 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP IF-2B PF01008.12 gi|304314210|ref|YP_003849357.1| - 7.1e-80 268.0 0.0 1.2e-79 267.2 0.0 1.4 1 1 0 1 1 1 1 Initiation factor 2 subunit family Met_10 PF02475.11 gi|304314211|ref|YP_003849358.1| - 3.1e-74 248.8 0.1 4.1e-74 248.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|304314211|ref|YP_003849358.1| - 3.8e-12 45.8 0.1 5.7e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|304314211|ref|YP_003849358.1| - 2.5e-11 43.6 0.2 4.9e-11 42.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|304314211|ref|YP_003849358.1| - 1.6e-10 40.5 0.1 2.4e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|304314211|ref|YP_003849358.1| - 1e-09 38.9 0.1 2.2e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304314211|ref|YP_003849358.1| - 1.2e-09 37.7 0.0 2.2e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|304314211|ref|YP_003849358.1| - 8e-08 32.0 0.0 1.8e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|304314211|ref|YP_003849358.1| - 3.1e-07 30.0 0.0 5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|304314211|ref|YP_003849358.1| - 2.6e-05 23.8 0.0 4.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|304314211|ref|YP_003849358.1| - 0.00012 21.5 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltrans_SAM PF10672.4 gi|304314211|ref|YP_003849358.1| - 0.00062 18.7 0.0 0.00083 18.2 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|304314211|ref|YP_003849358.1| - 0.0008 19.8 0.0 0.0016 18.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304314211|ref|YP_003849358.1| - 0.0015 17.7 0.0 0.0035 16.5 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.13 gi|304314211|ref|YP_003849358.1| - 0.0089 15.5 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_25 PF13649.1 gi|304314211|ref|YP_003849358.1| - 0.012 16.0 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|304314211|ref|YP_003849358.1| - 0.075 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase MethyltransfD12 PF02086.10 gi|304314211|ref|YP_003849358.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TP_methylase PF00590.15 gi|304314212|ref|YP_003849359.1| - 9.2e-23 81.0 0.2 1.1e-22 80.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_11 PF08241.7 gi|304314214|ref|YP_003849361.1| - 5e-13 49.3 0.0 6.9e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314214|ref|YP_003849361.1| - 8e-12 45.0 0.0 9.7e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304314214|ref|YP_003849361.1| - 2.2e-10 41.0 0.0 3.1e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|304314214|ref|YP_003849361.1| - 3.4e-08 33.7 0.0 4.9e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304314214|ref|YP_003849361.1| - 4.7e-08 32.4 0.0 6.4e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|304314214|ref|YP_003849361.1| - 4.7e-07 29.8 0.1 7.6e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304314214|ref|YP_003849361.1| - 4.8e-07 29.3 0.0 6.8e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|304314214|ref|YP_003849361.1| - 2.1e-06 27.5 0.0 5.3e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314214|ref|YP_003849361.1| - 9.7e-06 25.9 0.0 1.5e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|304314214|ref|YP_003849361.1| - 3.3e-05 22.9 0.0 4.1e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|304314214|ref|YP_003849361.1| - 6.3e-05 22.5 0.0 0.00014 21.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|304314214|ref|YP_003849361.1| - 0.0027 16.9 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|304314214|ref|YP_003849361.1| - 0.005 15.9 0.0 0.008 15.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_5 PF01795.14 gi|304314214|ref|YP_003849361.1| - 0.0074 15.5 0.0 2.2 7.4 0.0 2.1 1 1 1 2 2 2 2 MraW methylase family Methyltransf_3 PF01596.12 gi|304314214|ref|YP_003849361.1| - 0.0087 15.1 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase PASTA PF03793.14 gi|304314214|ref|YP_003849361.1| - 0.011 15.3 0.0 2.7 7.7 0.0 2.6 3 0 0 3 3 3 0 PASTA domain NodS PF05401.6 gi|304314214|ref|YP_003849361.1| - 0.055 12.8 0.0 0.064 12.6 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.14 gi|304314214|ref|YP_003849361.1| - 0.079 12.9 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase TGT PF01702.13 gi|304314215|ref|YP_003849362.1| - 1.1e-14 54.2 0.1 1.2e-10 41.1 0.0 2.1 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase Fer4_8 PF13183.1 gi|304314216|ref|YP_003849363.1| - 1.3e-12 47.5 7.5 2e-12 46.9 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314216|ref|YP_003849363.1| - 3e-11 43.5 7.9 5e-11 42.7 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314216|ref|YP_003849363.1| - 2.7e-09 37.1 5.2 4.9e-09 36.3 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314216|ref|YP_003849363.1| - 3.7e-06 26.6 8.1 7.7e-06 25.6 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314216|ref|YP_003849363.1| - 1.2e-05 25.6 9.0 3.3e-05 24.1 6.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314216|ref|YP_003849363.1| - 3.1e-05 24.3 9.3 0.012 16.0 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314216|ref|YP_003849363.1| - 0.0012 18.6 11.1 0.17 11.9 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304314216|ref|YP_003849363.1| - 0.0027 17.9 11.9 0.03 14.6 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|304314216|ref|YP_003849363.1| - 0.0031 17.0 11.3 0.079 12.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314216|ref|YP_003849363.1| - 0.023 14.5 8.4 0.064 13.1 5.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|304314216|ref|YP_003849363.1| - 0.059 12.9 5.5 0.71 9.5 0.7 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF678 PF05077.7 gi|304314216|ref|YP_003849363.1| - 0.11 12.4 2.7 0.11 12.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_3 PF12798.2 gi|304314216|ref|YP_003849363.1| - 0.31 11.7 15.1 0.35 11.5 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314216|ref|YP_003849363.1| - 0.47 11.2 14.0 5 7.9 2.0 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain CCG PF02754.11 gi|304314217|ref|YP_003849364.1| - 5e-44 148.2 2.0 3.4e-22 78.2 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Peptidase_C1_2 PF03051.10 gi|304314217|ref|YP_003849364.1| - 0.049 12.1 0.0 0.067 11.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase C1-like family DUF749 PF05370.6 gi|304314218|ref|YP_003849365.1| - 6e-38 128.6 0.3 6.6e-38 128.5 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) HEM4 PF02602.10 gi|304314218|ref|YP_003849365.1| - 0.069 12.3 0.0 0.078 12.2 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Ribosomal_L12 PF00542.14 gi|304314218|ref|YP_003849365.1| - 0.073 13.0 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain Transcrip_reg PF01709.15 gi|304314218|ref|YP_003849365.1| - 0.092 11.8 0.1 0.093 11.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF2096 PF09869.4 gi|304314219|ref|YP_003849366.1| - 6.7e-63 211.5 0.7 7.4e-63 211.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) TBPIP PF07106.8 gi|304314219|ref|YP_003849366.1| - 0.083 12.4 0.4 0.14 11.6 0.3 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ARD PF03079.9 gi|304314219|ref|YP_003849366.1| - 0.085 12.8 0.3 0.17 11.8 0.2 1.6 1 1 1 2 2 2 0 ARD/ARD' family Pneumovirus_M2 PF06436.6 gi|304314219|ref|YP_003849366.1| - 0.1 11.8 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Pneumovirus matrix protein 2 (M2) GAT PF03127.9 gi|304314219|ref|YP_003849366.1| - 0.1 12.5 0.2 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 GAT domain Metallophos_3 PF14582.1 gi|304314220|ref|YP_003849367.1| - 1.4e-18 66.9 0.1 2.3e-13 49.9 0.0 2.4 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.2 gi|304314220|ref|YP_003849367.1| - 6.5e-18 65.0 0.1 9.8e-18 64.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|304314220|ref|YP_003849367.1| - 6.4e-17 61.6 1.3 1e-16 60.9 0.9 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3006 PF11213.3 gi|304314220|ref|YP_003849367.1| - 0.023 14.4 0.5 0.42 10.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) ATP-cone PF03477.11 gi|304314221|ref|YP_003849368.1| - 2.7e-12 46.9 1.3 1.8e-11 44.3 0.1 2.8 3 0 0 3 3 3 1 ATP cone domain AAA_18 PF13238.1 gi|304314221|ref|YP_003849368.1| - 1.1e-07 32.1 0.2 7.2e-07 29.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|304314221|ref|YP_003849368.1| - 1.3e-07 32.4 0.3 6.9e-07 30.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|304314221|ref|YP_003849368.1| - 0.00015 20.9 0.0 0.00033 19.8 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin Cytidylate_kin2 PF13189.1 gi|304314221|ref|YP_003849368.1| - 0.0042 17.0 0.1 0.0074 16.2 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_28 PF13521.1 gi|304314221|ref|YP_003849368.1| - 0.041 13.8 0.4 0.85 9.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain CBS PF00571.23 gi|304314222|ref|YP_003849369.1| - 8.1e-30 102.3 4.4 3e-15 55.7 0.2 2.1 2 0 0 2 2 2 2 CBS domain SporV_AA PF12164.3 gi|304314222|ref|YP_003849369.1| - 0.12 12.4 0.7 1.5 8.8 0.0 2.2 2 0 0 2 2 2 0 Stage V sporulation protein AA PHO4 PF01384.15 gi|304314223|ref|YP_003849370.1| - 9.4e-78 261.1 29.9 1.1e-77 260.8 20.7 1.1 1 0 0 1 1 1 1 Phosphate transporter family Cation_efflux PF01545.16 gi|304314224|ref|YP_003849371.1| - 4.8e-59 199.7 4.2 5.3e-59 199.6 2.9 1.0 1 0 0 1 1 1 1 Cation efflux family BON PF04972.12 gi|304314224|ref|YP_003849371.1| - 0.0047 16.6 0.1 0.031 14.0 0.0 2.3 2 1 1 3 3 3 1 BON domain DUF2104 PF09877.4 gi|304314224|ref|YP_003849371.1| - 0.0082 16.0 0.4 0.0082 16.0 0.3 2.6 3 0 0 3 3 3 1 Predicted membrane protein (DUF2104) Aminotran_1_2 PF00155.16 gi|304314225|ref|YP_003849372.1| - 5.5e-66 222.9 0.0 6.3e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|304314225|ref|YP_003849372.1| - 9.3e-08 31.1 0.0 1.5e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|304314225|ref|YP_003849372.1| - 4e-07 29.4 0.0 6.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|304314225|ref|YP_003849372.1| - 2.7e-06 25.9 0.0 4.1e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|304314225|ref|YP_003849372.1| - 4.8e-05 22.5 0.0 7.3e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.16 gi|304314226|ref|YP_003849373.1| - 1.2e-14 54.8 0.0 4.2e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|304314226|ref|YP_003849373.1| - 0.0017 18.2 0.0 0.0066 16.3 0.0 2.0 2 0 0 2 2 2 1 B12 binding domain CTP_transf_2 PF01467.21 gi|304314227|ref|YP_003849374.1| - 9.5e-22 77.7 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|304314227|ref|YP_003849374.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 0 FAD synthetase NTPase_I-T PF01931.13 gi|304314228|ref|YP_003849375.1| - 2.6e-58 196.4 0.0 2.9e-58 196.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 STT3 PF02516.9 gi|304314229|ref|YP_003849376.1| - 1.8e-72 244.9 28.7 7.2e-71 239.6 19.9 2.1 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit STT3 PF02516.9 gi|304314230|ref|YP_003849377.1| - 6.4e-58 196.8 49.6 5e-57 193.9 34.4 1.9 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Class_IIIsignal PF04021.7 gi|304314231|ref|YP_003849378.1| - 2.6e-05 23.7 8.5 2.6e-05 23.7 5.9 1.5 2 0 0 2 2 2 1 Class III signal peptide Class_IIIsignal PF04021.7 gi|304314232|ref|YP_003849379.1| - 1.1e-06 28.0 4.6 1.5e-06 27.7 3.2 1.1 1 0 0 1 1 1 1 Class III signal peptide MASE1 PF05231.9 gi|304314232|ref|YP_003849379.1| - 0.093 11.7 0.0 0.098 11.6 0.0 1.0 1 0 0 1 1 1 0 MASE1 CbiN PF02553.10 gi|304314232|ref|YP_003849379.1| - 0.097 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Cobalt transport protein component CbiN PMP1_2 PF08114.6 gi|304314232|ref|YP_003849379.1| - 0.15 11.5 0.7 0.21 11.0 0.5 1.2 1 0 0 1 1 1 0 ATPase proteolipid family Flp_Fap PF04964.9 gi|304314232|ref|YP_003849379.1| - 1.1 8.9 4.9 2.6 7.7 3.4 1.6 1 1 0 1 1 1 0 Flp/Fap pilin component PsbJ PF01788.12 gi|304314232|ref|YP_003849379.1| - 1.7 8.2 4.6 2.3 7.8 3.2 1.2 1 0 0 1 1 1 0 PsbJ UPF0146 PF03686.8 gi|304314233|ref|YP_003849380.1| - 0.023 14.5 0.1 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Class_IIIsignal PF04021.7 gi|304314234|ref|YP_003849381.1| - 2.7e-06 26.8 6.5 4.2e-06 26.2 4.5 1.3 1 0 0 1 1 1 1 Class III signal peptide Chordopox_A13L PF05961.6 gi|304314234|ref|YP_003849381.1| - 0.1 12.5 0.4 0.12 12.2 0.3 1.1 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Flp_Fap PF04964.9 gi|304314234|ref|YP_003849381.1| - 0.24 11.0 3.2 0.35 10.5 2.2 1.4 1 1 0 1 1 1 0 Flp/Fap pilin component Regulator_TrmB PF11495.3 gi|304314235|ref|YP_003849382.1| - 0.0099 14.8 1.1 0.018 13.9 0.7 1.4 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB CENP-F_N PF10481.4 gi|304314235|ref|YP_003849382.1| - 0.041 13.2 1.4 0.2 10.9 0.2 2.2 2 0 0 2 2 2 0 Cenp-F N-terminal domain Phage_term_smal PF05944.7 gi|304314235|ref|YP_003849382.1| - 0.063 12.9 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Phage small terminase subunit Neurensin PF14927.1 gi|304314235|ref|YP_003849382.1| - 0.25 10.7 2.0 0.46 9.8 1.4 1.4 1 0 0 1 1 1 0 Neurensin DUF872 PF05915.7 gi|304314235|ref|YP_003849382.1| - 5.2 6.9 7.7 12 5.8 5.3 1.6 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Lactamase_B_3 PF13483.1 gi|304314236|ref|YP_003849383.1| - 1.3e-28 99.8 0.0 1.6e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|304314236|ref|YP_003849383.1| - 8.9e-20 71.0 0.1 1.1e-19 70.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|304314236|ref|YP_003849383.1| - 3.1e-17 62.8 1.4 4e-17 62.5 0.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PAS PF00989.19 gi|304314236|ref|YP_003849383.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 PAS fold MMR_HSR1 PF01926.18 gi|304314237|ref|YP_003849384.1| - 3.3e-17 62.4 0.0 4.9e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|304314237|ref|YP_003849384.1| - 3e-12 46.3 0.1 1.4e-05 24.5 0.0 2.8 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|304314237|ref|YP_003849384.1| - 2.5e-07 30.1 0.0 0.0071 15.6 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Septin PF00735.13 gi|304314237|ref|YP_003849384.1| - 1.3e-05 24.4 0.0 1.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Septin Miro PF08477.8 gi|304314237|ref|YP_003849384.1| - 5e-05 23.7 0.0 0.00024 21.6 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|304314237|ref|YP_003849384.1| - 8.7e-05 21.8 0.1 0.00071 18.8 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|304314237|ref|YP_003849384.1| - 0.00022 22.0 0.0 0.00037 21.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|304314237|ref|YP_003849384.1| - 0.00027 20.2 0.1 0.12 11.5 0.0 2.9 2 2 1 3 3 3 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|304314237|ref|YP_003849384.1| - 0.0014 18.4 0.0 0.4 10.4 0.0 2.3 1 1 1 2 2 2 1 Dynamin family Ras PF00071.17 gi|304314237|ref|YP_003849384.1| - 0.0095 15.3 0.0 4.1 6.7 0.0 2.9 1 1 2 3 3 3 1 Ras family RNA_helicase PF00910.17 gi|304314237|ref|YP_003849384.1| - 0.011 15.8 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|304314237|ref|YP_003849384.1| - 0.022 14.3 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|304314237|ref|YP_003849384.1| - 0.023 14.9 0.0 0.049 13.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|304314237|ref|YP_003849384.1| - 0.044 14.1 0.1 0.068 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|304314237|ref|YP_003849384.1| - 0.049 12.2 0.0 0.058 11.9 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Arch_ATPase PF01637.13 gi|304314237|ref|YP_003849384.1| - 0.072 12.7 0.1 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|304314237|ref|YP_003849384.1| - 0.075 12.4 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain EBP50_C-term PF09007.6 gi|304314237|ref|YP_003849384.1| - 0.088 12.6 0.1 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 EBP50, C-terminal AAA_22 PF13401.1 gi|304314237|ref|YP_003849384.1| - 0.11 12.7 0.1 0.29 11.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|304314237|ref|YP_003849384.1| - 0.13 11.6 0.1 3.1 7.2 0.0 2.6 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2073 PF09846.4 gi|304314238|ref|YP_003849385.1| - 7e-36 122.0 1.5 8.1e-36 121.8 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|304314239|ref|YP_003849386.1| - 2.7e-29 101.7 7.2 1.4e-15 57.3 0.1 2.0 1 1 1 2 2 2 2 Zn-ribbon containing protein (DUF2072) Prok-RING_1 PF14446.1 gi|304314239|ref|YP_003849386.1| - 0.0013 18.3 0.7 0.002 17.8 0.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C2H2_4 PF13894.1 gi|304314239|ref|YP_003849386.1| - 0.0024 18.0 2.2 0.97 9.9 0.1 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger HypA PF01155.14 gi|304314239|ref|YP_003849386.1| - 0.0048 16.5 0.7 0.0074 15.9 0.5 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|304314239|ref|YP_003849386.1| - 0.017 14.7 2.5 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|304314239|ref|YP_003849386.1| - 0.021 14.6 1.1 0.028 14.2 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF4187 PF13821.1 gi|304314239|ref|YP_003849386.1| - 0.04 13.5 1.6 0.071 12.7 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) FYVE PF01363.16 gi|304314239|ref|YP_003849386.1| - 0.072 12.9 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-ISL3 PF14690.1 gi|304314239|ref|YP_003849386.1| - 0.093 12.7 3.5 0.83 9.7 0.4 2.8 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|304314239|ref|YP_003849386.1| - 0.11 12.4 3.6 0.24 11.4 2.5 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|304314239|ref|YP_003849386.1| - 0.12 12.0 1.3 0.16 11.6 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_5 PF13719.1 gi|304314239|ref|YP_003849386.1| - 0.12 11.9 3.0 5.1 6.7 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|304314239|ref|YP_003849386.1| - 0.13 11.6 3.6 0.64 9.3 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|304314239|ref|YP_003849386.1| - 0.18 11.5 3.2 6.2 6.6 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|304314239|ref|YP_003849386.1| - 0.19 12.1 4.4 1.7 9.1 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|304314239|ref|YP_003849386.1| - 0.32 10.5 5.3 2.4 7.7 3.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|304314239|ref|YP_003849386.1| - 0.36 10.6 1.3 0.48 10.1 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2082 PF09855.4 gi|304314239|ref|YP_003849386.1| - 0.54 10.1 3.6 9.3 6.1 0.1 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-H2C2_2 PF13465.1 gi|304314239|ref|YP_003849386.1| - 1 9.7 4.6 4.5 7.7 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain FYDLN_acid PF09538.5 gi|304314239|ref|YP_003849386.1| - 1.1 9.8 3.9 3.9 8.0 2.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-C2HC_2 PF13913.1 gi|304314239|ref|YP_003849386.1| - 3.4 7.4 6.9 2 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type FbpA PF05833.6 gi|304314240|ref|YP_003849387.1| - 7.4e-105 351.1 8.4 9.2e-105 350.7 5.9 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|304314240|ref|YP_003849387.1| - 7.6e-29 99.4 0.0 1.5e-28 98.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|304314240|ref|YP_003849387.1| - 0.0056 16.4 0.0 0.035 13.8 0.0 2.3 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.17 gi|304314240|ref|YP_003849387.1| - 0.018 15.4 0.2 0.095 13.1 0.0 2.4 1 1 1 2 2 2 0 Ribosomal protein S13/S18 Med9 PF07544.8 gi|304314240|ref|YP_003849387.1| - 0.13 12.0 11.5 0.13 12.0 1.3 2.9 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 MFS_2 PF13347.1 gi|304314241|ref|YP_003849388.1| - 0.016 13.6 3.0 0.018 13.4 2.1 1.2 1 0 0 1 1 1 0 MFS/sugar transport protein FUSC_2 PF13515.1 gi|304314241|ref|YP_003849388.1| - 0.081 12.8 6.2 0.11 12.3 4.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like DUF4017 PF13209.1 gi|304314241|ref|YP_003849388.1| - 0.42 10.4 4.0 9.8 6.0 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4017) DUF2070 PF09843.4 gi|304314242|ref|YP_003849389.1| - 1.8e-49 167.6 1.2 2.7e-49 167.0 0.2 1.7 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) DUF965 PF06135.7 gi|304314242|ref|YP_003849389.1| - 0.0079 16.2 0.1 1.2 9.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF965) Fumerase_C PF05683.7 gi|304314243|ref|YP_003849390.1| - 1.6e-50 171.1 0.0 2.2e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 Fumarase C-terminus PHP PF02811.14 gi|304314244|ref|YP_003849391.1| - 4e-05 23.4 0.0 4.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 PHP domain NYN PF01936.13 gi|304314246|ref|YP_003849393.1| - 4.6e-22 78.8 0.1 5.6e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 NYN domain Apc4_WD40 PF12894.2 gi|304314246|ref|YP_003849393.1| - 0.089 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain CoA_binding_2 PF13380.1 gi|304314246|ref|YP_003849393.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain Aminotran_5 PF00266.14 gi|304314247|ref|YP_003849394.1| - 3.8e-07 29.1 0.0 5.7e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.8 gi|304314247|ref|YP_003849394.1| - 6.6e-07 28.3 0.0 9.7e-07 27.8 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Beta_elim_lyase PF01212.16 gi|304314247|ref|YP_003849394.1| - 1.4e-05 24.4 0.0 2.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|304314247|ref|YP_003849394.1| - 0.00033 19.0 0.0 0.00077 17.8 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|304314247|ref|YP_003849394.1| - 0.012 14.5 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Peripla_BP_4 PF13407.1 gi|304314247|ref|YP_003849394.1| - 0.05 12.9 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain RTC PF01137.16 gi|304314248|ref|YP_003849395.1| - 3.2e-57 192.9 0.0 4.3e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|304314248|ref|YP_003849395.1| - 2.9e-25 88.2 0.5 5.5e-25 87.3 0.4 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BPL_LplA_LipB PF03099.14 gi|304314249|ref|YP_003849396.1| - 2.9e-29 101.6 0.0 4.3e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|304314249|ref|YP_003849396.1| - 7.8e-12 44.6 1.2 1.7e-11 43.5 0.8 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain CPSase_L_D2 PF02786.12 gi|304314250|ref|YP_003849397.1| - 3.2e-83 278.1 0.1 4.8e-83 277.6 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.14 gi|304314250|ref|YP_003849397.1| - 3.4e-42 142.7 0.0 7.7e-42 141.6 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain CPSase_L_chain PF00289.17 gi|304314250|ref|YP_003849397.1| - 7.1e-42 141.9 0.0 1.5e-41 140.9 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_Ter PF15632.1 gi|304314250|ref|YP_003849397.1| - 1.8e-18 66.4 0.0 5.3e-18 64.8 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|304314250|ref|YP_003849397.1| - 1.2e-15 57.7 0.0 2.9e-15 56.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|304314250|ref|YP_003849397.1| - 9.6e-11 41.4 0.0 2.6e-10 40.0 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|304314250|ref|YP_003849397.1| - 4.4e-09 36.0 0.0 1.5e-08 34.3 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|304314250|ref|YP_003849397.1| - 2.4e-07 30.7 0.0 5e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|304314250|ref|YP_003849397.1| - 8.2e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|304314250|ref|YP_003849397.1| - 0.00058 19.2 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|304314250|ref|YP_003849397.1| - 0.0022 17.2 0.0 0.0044 16.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain MTS PF05175.9 gi|304314251|ref|YP_003849398.1| - 2.5e-16 59.5 0.0 3.5e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|304314251|ref|YP_003849398.1| - 1.2e-14 54.3 0.2 2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314251|ref|YP_003849398.1| - 2.3e-13 49.9 0.0 3.2e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|304314251|ref|YP_003849398.1| - 2.2e-11 43.4 1.1 2.8e-11 43.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|304314251|ref|YP_003849398.1| - 4.8e-10 39.2 0.0 5.7e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|304314251|ref|YP_003849398.1| - 1.4e-08 35.2 0.2 1.9e-08 34.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|304314251|ref|YP_003849398.1| - 1.8e-08 34.0 0.0 2.4e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|304314251|ref|YP_003849398.1| - 4e-07 30.3 0.1 7.3e-07 29.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|304314251|ref|YP_003849398.1| - 3.4e-06 26.2 0.0 4.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_32 PF13679.1 gi|304314251|ref|YP_003849398.1| - 0.00021 20.9 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304314251|ref|YP_003849398.1| - 0.00041 20.7 0.0 0.00078 19.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314251|ref|YP_003849398.1| - 0.002 18.5 0.0 0.0039 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304314251|ref|YP_003849398.1| - 0.0034 16.5 0.1 0.0049 16.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.4 gi|304314251|ref|YP_003849398.1| - 0.0049 16.3 0.1 0.0073 15.7 0.1 1.2 1 0 0 1 1 1 1 Putative methyltransferase GidB PF02527.10 gi|304314251|ref|YP_003849398.1| - 0.0087 15.2 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_23 PF13489.1 gi|304314251|ref|YP_003849398.1| - 0.033 13.9 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|304314251|ref|YP_003849398.1| - 0.056 12.9 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.11 gi|304314251|ref|YP_003849398.1| - 0.078 12.0 0.0 0.31 10.0 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase FmrO PF07091.6 gi|304314251|ref|YP_003849398.1| - 0.09 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltrn_RNA_3 PF02598.12 gi|304314252|ref|YP_003849399.1| - 4.9e-63 213.1 0.0 7.2e-63 212.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.1 gi|304314252|ref|YP_003849399.1| - 0.018 14.2 0.1 0.42 9.7 0.0 2.1 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.14 gi|304314252|ref|YP_003849399.1| - 0.027 14.3 0.0 7.8 6.3 0.0 2.2 2 0 0 2 2 2 0 SpoU rRNA Methylase family Ribosomal_L3 PF00297.17 gi|304314253|ref|YP_003849400.1| - 2.1e-82 276.4 0.2 2.5e-82 276.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|304314254|ref|YP_003849401.1| - 2.1e-47 161.0 0.3 2.4e-47 160.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|304314255|ref|YP_003849402.1| - 2.2e-17 62.7 1.8 3.1e-17 62.2 1.3 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 Spore_III_AF PF09581.5 gi|304314255|ref|YP_003849402.1| - 0.044 13.6 0.5 0.05 13.4 0.4 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Ribosomal_L2_C PF03947.13 gi|304314256|ref|YP_003849403.1| - 1.3e-47 160.8 0.7 2e-47 160.2 0.5 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|304314256|ref|YP_003849403.1| - 5.3e-22 77.5 0.0 1.1e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|304314257|ref|YP_003849404.1| - 2.4e-27 94.3 0.5 3.1e-27 94.0 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|304314258|ref|YP_003849405.1| - 4.2e-37 126.2 0.0 5e-37 126.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e KH_2 PF07650.12 gi|304314259|ref|YP_003849406.1| - 4.5e-17 61.3 0.1 1.1e-16 60.0 0.1 1.7 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|304314259|ref|YP_003849406.1| - 1.3e-15 57.3 0.7 2.2e-15 56.6 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|304314259|ref|YP_003849406.1| - 4.6e-05 22.9 0.9 0.00033 20.2 0.0 2.6 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|304314259|ref|YP_003849406.1| - 0.00078 19.0 0.6 0.012 15.1 0.0 2.9 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|304314259|ref|YP_003849406.1| - 0.0073 15.9 0.0 0.02 14.5 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_5 PF13184.1 gi|304314259|ref|YP_003849406.1| - 0.1 12.4 1.7 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L29 PF00831.18 gi|304314260|ref|YP_003849407.1| - 1.1e-20 73.0 1.6 1.2e-20 72.9 1.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein ING PF12998.2 gi|304314260|ref|YP_003849407.1| - 0.0001 22.5 0.8 0.00012 22.2 0.5 1.0 1 0 0 1 1 1 1 Inhibitor of growth proteins N-terminal histone-binding Amidoligase_2 PF12224.3 gi|304314260|ref|YP_003849407.1| - 0.00062 19.4 0.0 0.00062 19.4 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme Phage_GP20 PF06810.6 gi|304314260|ref|YP_003849407.1| - 0.062 12.7 0.1 0.071 12.5 0.1 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Wbp11 PF09429.5 gi|304314260|ref|YP_003849407.1| - 0.1 12.5 1.5 0.14 12.1 1.1 1.4 1 1 0 1 1 1 0 WW domain binding protein 11 SUI1 PF01253.17 gi|304314261|ref|YP_003849408.1| - 1.7e-21 75.7 1.8 2.2e-21 75.4 1.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|304314261|ref|YP_003849408.1| - 0.00016 21.8 0.6 0.00036 20.7 0.4 1.6 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF1858 PF08984.6 gi|304314261|ref|YP_003849408.1| - 0.008 15.8 0.0 0.28 10.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1858) DUF4479 PF14794.1 gi|304314261|ref|YP_003849408.1| - 0.041 13.4 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) DTW PF03942.10 gi|304314261|ref|YP_003849408.1| - 0.4 9.8 1.7 0.53 9.4 1.2 1.2 1 0 0 1 1 1 0 DTW domain UPF0086 PF01868.11 gi|304314262|ref|YP_003849409.1| - 3.4e-33 113.1 0.6 3.8e-33 112.9 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.14 gi|304314262|ref|YP_003849409.1| - 0.0055 16.3 2.4 0.097 12.3 0.2 2.2 2 0 0 2 2 2 1 Myosin N-terminal SH3-like domain MS_channel PF00924.13 gi|304314262|ref|YP_003849409.1| - 0.099 11.9 0.1 0.15 11.4 0.1 1.3 1 1 0 1 1 1 0 Mechanosensitive ion channel YajC PF02699.10 gi|304314262|ref|YP_003849409.1| - 0.27 10.9 1.1 0.54 9.9 0.2 1.8 2 0 0 2 2 2 0 Preprotein translocase subunit Ribosomal_S17 PF00366.15 gi|304314263|ref|YP_003849410.1| - 4.7e-28 97.0 4.2 6e-28 96.6 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|304314264|ref|YP_003849411.1| - 8.6e-36 122.3 0.3 9.7e-36 122.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e FeoA PF04023.9 gi|304314264|ref|YP_003849411.1| - 0.024 14.5 3.5 0.36 10.8 0.4 2.5 1 1 1 2 2 2 0 FeoA domain KOW PF00467.24 gi|304314265|ref|YP_003849412.1| - 2.5e-09 36.4 3.3 2.5e-09 36.4 2.3 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.15 gi|304314266|ref|YP_003849413.1| - 1.6e-31 107.7 0.1 4.8e-31 106.2 0.0 1.8 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|304314266|ref|YP_003849413.1| - 3.1e-17 62.1 7.7 6.9e-17 61.0 5.3 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|304314266|ref|YP_003849413.1| - 4e-11 42.1 0.1 7.4e-11 41.3 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|304314266|ref|YP_003849413.1| - 0.00084 18.9 0.1 0.00084 18.9 0.1 2.7 4 0 0 4 4 4 1 KOW motif Ribosomal_L5_C PF00673.16 gi|304314267|ref|YP_003849414.1| - 2e-25 88.3 0.0 3.4e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|304314267|ref|YP_003849414.1| - 1.9e-17 62.7 0.0 5.2e-17 61.3 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|304314268|ref|YP_003849415.1| - 4.8e-17 61.0 4.8 5e-17 61.0 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|304314268|ref|YP_003849415.1| - 0.033 13.8 2.7 0.054 13.1 1.9 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.6 gi|304314268|ref|YP_003849415.1| - 0.036 13.7 0.8 0.041 13.5 0.5 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|304314268|ref|YP_003849415.1| - 0.099 12.4 1.3 0.26 11.1 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF2039 PF10217.4 gi|304314268|ref|YP_003849415.1| - 0.2 11.7 2.3 1.9 8.5 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) zf-dskA_traR PF01258.12 gi|304314268|ref|YP_003849415.1| - 0.28 10.9 2.6 4.2 7.2 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DM PF00751.13 gi|304314268|ref|YP_003849415.1| - 1.4 8.4 5.1 4.8 6.7 3.7 1.7 1 1 0 1 1 1 0 DM DNA binding domain Ribosomal_S8 PF00410.14 gi|304314269|ref|YP_003849416.1| - 4e-27 94.5 0.0 5.8e-27 94.0 0.0 1.2 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|304314270|ref|YP_003849417.1| - 1.9e-32 111.5 9.6 3.2e-20 72.3 1.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 YbbR PF07949.7 gi|304314270|ref|YP_003849417.1| - 0.072 13.2 2.7 16 5.7 0.1 3.3 3 1 0 3 3 3 0 YbbR-like protein RNA_bind_2 PF10133.4 gi|304314270|ref|YP_003849417.1| - 0.074 13.0 0.4 9.2 6.3 0.0 3.2 3 0 0 3 3 3 0 Predicted RNA-binding protein MacB_PCD PF12704.2 gi|304314270|ref|YP_003849417.1| - 0.079 12.5 0.5 0.093 12.3 0.3 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain Ribosomal_L32e PF01655.13 gi|304314271|ref|YP_003849418.1| - 9.4e-42 141.5 1.2 1e-41 141.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 S6PP_C PF08472.5 gi|304314271|ref|YP_003849418.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 1 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal Ribosomal_L19e PF01280.15 gi|304314272|ref|YP_003849419.1| - 8.7e-57 191.0 13.1 9.5e-57 190.9 9.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4319 PF14203.1 gi|304314272|ref|YP_003849419.1| - 0.1 12.1 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) LepA_C PF06421.7 gi|304314272|ref|YP_003849419.1| - 0.34 10.8 6.5 0.56 10.1 1.3 2.1 2 0 0 2 2 2 0 GTP-binding protein LepA C-terminus Ribosomal_L18p PF00861.17 gi|304314273|ref|YP_003849420.1| - 3.6e-39 133.6 1.0 4.7e-39 133.2 0.7 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|304314273|ref|YP_003849420.1| - 8.9e-09 35.7 0.1 1.7e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region DUF448 PF04296.8 gi|304314273|ref|YP_003849420.1| - 0.0078 15.8 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF448) Ribosomal_S5 PF00333.15 gi|304314274|ref|YP_003849421.1| - 4.6e-27 93.5 2.5 4.6e-27 93.5 1.7 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|304314274|ref|YP_003849421.1| - 2.3e-24 84.4 0.1 3.5e-24 83.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|304314275|ref|YP_003849422.1| - 1.3e-18 66.2 0.0 2.1e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|304314276|ref|YP_003849423.1| - 1.4e-37 128.9 0.5 1.8e-37 128.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DHHA1 PF02272.14 gi|304314276|ref|YP_003849423.1| - 0.49 10.1 0.1 0.49 10.1 0.1 2.0 2 0 0 2 2 2 0 DHHA1 domain SecY PF00344.15 gi|304314277|ref|YP_003849424.1| - 5e-94 315.0 20.7 5.9e-94 314.8 14.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|304314277|ref|YP_003849424.1| - 1.5e-13 49.9 1.5 7.2e-13 47.8 0.8 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Phage_holin_5 PF06946.6 gi|304314277|ref|YP_003849424.1| - 0.028 14.5 0.1 0.1 12.7 0.0 1.9 1 0 0 1 1 1 0 Phage holin NRPS PF08415.5 gi|304314277|ref|YP_003849424.1| - 0.13 12.0 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Nonribosomal peptide synthase Ninjurin PF04923.7 gi|304314277|ref|YP_003849424.1| - 6 6.6 7.4 0.44 10.2 0.8 2.4 3 1 0 3 3 3 0 Ninjurin AAA_18 PF13238.1 gi|304314278|ref|YP_003849425.1| - 1.2e-17 64.3 0.0 1.7e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304314278|ref|YP_003849425.1| - 1.8e-05 25.5 0.0 2.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|304314278|ref|YP_003849425.1| - 8.2e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|304314278|ref|YP_003849425.1| - 0.00062 18.9 0.1 0.0012 17.9 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin AAA_19 PF13245.1 gi|304314278|ref|YP_003849425.1| - 0.0064 16.2 0.3 0.092 12.5 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain cobW PF02492.14 gi|304314278|ref|YP_003849425.1| - 0.0089 15.4 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.4 gi|304314278|ref|YP_003849425.1| - 0.011 14.7 0.5 0.047 12.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|304314278|ref|YP_003849425.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 NTPase KTI12 PF08433.5 gi|304314278|ref|YP_003849425.1| - 0.032 13.4 0.2 0.059 12.5 0.0 1.6 1 1 1 2 2 2 0 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|304314278|ref|YP_003849425.1| - 0.034 14.1 0.2 0.13 12.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|304314278|ref|YP_003849425.1| - 0.049 13.1 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF106 PF01956.11 gi|304314279|ref|YP_003849426.1| - 1.3e-41 141.9 8.7 1.5e-41 141.7 6.0 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|304314279|ref|YP_003849426.1| - 4.5e-05 23.1 5.9 6.1e-05 22.7 4.1 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2721 PF11026.3 gi|304314279|ref|YP_003849426.1| - 0.0003 20.4 0.1 0.00041 19.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2721) Bul1_C PF04426.7 gi|304314279|ref|YP_003849426.1| - 0.028 13.6 1.6 0.043 13.0 1.1 1.2 1 0 0 1 1 1 0 Bul1 C terminus DUF2232 PF09991.4 gi|304314279|ref|YP_003849426.1| - 0.032 13.2 7.1 0.059 12.3 4.9 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2232) Reticulon PF02453.12 gi|304314279|ref|YP_003849426.1| - 0.035 13.7 0.2 0.084 12.4 0.0 1.6 1 1 1 2 2 2 0 Reticulon DUF2207 PF09972.4 gi|304314279|ref|YP_003849426.1| - 0.039 12.5 0.7 0.046 12.3 0.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PhyH PF05721.8 gi|304314279|ref|YP_003849426.1| - 0.042 13.8 0.0 0.053 13.5 0.0 1.1 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) DUF1176 PF06674.6 gi|304314279|ref|YP_003849426.1| - 0.05 12.7 0.5 0.065 12.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1176) DUF2208 PF09973.4 gi|304314279|ref|YP_003849426.1| - 0.059 12.5 5.0 0.083 12.1 3.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) IncA PF04156.9 gi|304314279|ref|YP_003849426.1| - 0.06 12.9 2.1 0.1 12.2 1.5 1.3 1 0 0 1 1 1 0 IncA protein Phage_Gp23 PF10669.4 gi|304314279|ref|YP_003849426.1| - 0.07 13.2 4.1 0.11 12.6 2.8 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) DUF2418 PF10332.4 gi|304314279|ref|YP_003849426.1| - 0.09 13.0 5.9 4.7 7.5 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) DUF1090 PF06476.7 gi|304314279|ref|YP_003849426.1| - 0.29 10.8 5.9 0.37 10.4 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) MgtE PF01769.11 gi|304314279|ref|YP_003849426.1| - 0.32 11.2 2.4 3.3 8.0 0.4 2.2 2 0 0 2 2 2 0 Divalent cation transporter DUF2570 PF10828.3 gi|304314279|ref|YP_003849426.1| - 0.36 10.4 4.5 0.75 9.4 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) FKBP_N PF01346.13 gi|304314279|ref|YP_003849426.1| - 0.4 10.7 9.1 0.67 10.0 6.3 1.3 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DUF4446 PF14584.1 gi|304314279|ref|YP_003849426.1| - 0.45 10.3 3.0 0.7 9.7 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DPM3 PF08285.6 gi|304314279|ref|YP_003849426.1| - 0.58 10.0 0.1 0.58 10.0 0.0 2.5 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Histone_HNS PF00816.16 gi|304314279|ref|YP_003849426.1| - 1.6 9.2 4.4 2.3 8.7 3.1 1.2 1 0 0 1 1 1 0 H-NS histone family OmpH PF03938.9 gi|304314279|ref|YP_003849426.1| - 2.9 7.8 11.9 4.2 7.2 8.2 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4064 PF13273.1 gi|304314279|ref|YP_003849426.1| - 3.2 7.9 5.7 25 5.0 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF4199 PF13858.1 gi|304314279|ref|YP_003849426.1| - 3.9 7.3 13.3 0.63 9.9 5.5 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF4199) Ribosomal_L34e PF01199.13 gi|304314280|ref|YP_003849427.1| - 2.7e-30 104.4 9.4 2.9e-30 104.3 6.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Prim_Zn_Ribbon PF08273.7 gi|304314280|ref|YP_003849427.1| - 0.0037 17.3 0.3 0.9 9.6 0.0 2.2 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|304314280|ref|YP_003849427.1| - 0.025 14.3 1.5 0.052 13.3 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|304314280|ref|YP_003849427.1| - 0.029 14.2 1.1 1.7 8.6 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme C1_1 PF00130.17 gi|304314280|ref|YP_003849427.1| - 0.045 13.4 0.1 0.27 10.9 0.1 1.9 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L34 PF00468.12 gi|304314280|ref|YP_003849427.1| - 0.11 12.1 0.5 0.11 12.1 0.3 1.8 2 0 0 2 2 2 0 Ribosomal protein L34 DUF2197 PF09963.4 gi|304314280|ref|YP_003849427.1| - 0.16 11.9 0.3 0.16 11.9 0.2 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) PHD PF00628.24 gi|304314280|ref|YP_003849427.1| - 0.17 11.6 2.0 1.1 9.0 1.4 2.0 1 1 0 1 1 1 0 PHD-finger Tnp_zf-ribbon_2 PF13842.1 gi|304314280|ref|YP_003849427.1| - 0.26 11.7 3.4 4.2 7.8 0.1 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-ribbon_3 PF13248.1 gi|304314280|ref|YP_003849427.1| - 0.27 10.4 2.2 2.6 7.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|304314280|ref|YP_003849427.1| - 9.5 6.0 7.1 19 5.0 0.2 2.7 3 0 0 3 3 3 0 Nudix N-terminal Cytidylate_kin2 PF13189.1 gi|304314281|ref|YP_003849428.1| - 1.3e-21 77.3 1.7 1.4e-20 73.9 1.2 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|304314281|ref|YP_003849428.1| - 1e-14 54.9 0.2 1.4e-14 54.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304314281|ref|YP_003849428.1| - 1.8e-13 51.3 0.6 2.9e-13 50.6 0.4 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|304314281|ref|YP_003849428.1| - 7.8e-05 22.1 2.3 0.00011 21.7 1.6 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|304314281|ref|YP_003849428.1| - 0.00061 19.7 0.4 0.58 10.0 0.1 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_28 PF13521.1 gi|304314281|ref|YP_003849428.1| - 0.0027 17.6 0.1 0.0039 17.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|304314281|ref|YP_003849428.1| - 0.014 15.3 0.2 0.027 14.3 0.2 1.8 1 1 0 1 1 1 0 Adenylate kinase PRK PF00485.13 gi|304314281|ref|YP_003849428.1| - 0.037 13.6 0.2 0.071 12.6 0.1 1.6 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|304314281|ref|YP_003849428.1| - 0.075 12.9 0.1 0.15 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain HHH_6 PF14579.1 gi|304314281|ref|YP_003849428.1| - 0.1 12.6 0.5 0.3 11.1 0.0 2.0 3 0 0 3 3 3 0 Helix-hairpin-helix motif CoaE PF01121.15 gi|304314281|ref|YP_003849428.1| - 0.16 11.3 2.1 0.19 11.0 0.1 1.9 1 1 1 2 2 2 0 Dephospho-CoA kinase AAA_19 PF13245.1 gi|304314281|ref|YP_003849428.1| - 0.22 11.2 0.9 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain KOW PF00467.24 gi|304314282|ref|YP_003849429.1| - 7.3e-05 22.3 1.4 0.00011 21.7 0.9 1.6 1 1 0 1 1 1 1 KOW motif TruB_N PF01509.13 gi|304314283|ref|YP_003849430.1| - 2e-28 99.3 0.1 6.5e-25 88.0 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|304314283|ref|YP_003849430.1| - 6e-18 64.5 0.2 1.2e-17 63.5 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|304314283|ref|YP_003849430.1| - 6.6e-18 64.2 1.0 6.6e-18 64.2 0.7 1.7 2 0 0 2 2 2 1 PUA domain Ribosomal_S13 PF00416.17 gi|304314284|ref|YP_003849431.1| - 3.2e-31 107.9 0.5 3.8e-31 107.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|304314284|ref|YP_003849431.1| - 0.00017 20.2 0.0 0.00019 20.1 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.1 gi|304314284|ref|YP_003849431.1| - 0.005 16.9 0.8 0.35 11.0 0.0 1.6 1 1 1 2 2 2 2 Helix-hairpin-helix domain DUF1192 PF06698.6 gi|304314284|ref|YP_003849431.1| - 0.018 14.8 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) S4 PF01479.20 gi|304314285|ref|YP_003849432.1| - 4.5e-14 51.6 0.2 9e-14 50.6 0.1 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|304314285|ref|YP_003849432.1| - 0.009 16.3 2.0 0.009 16.3 1.4 1.9 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|304314286|ref|YP_003849433.1| - 1.8e-39 134.3 0.4 2.1e-39 134.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|304314287|ref|YP_003849434.1| - 1.7e-32 111.8 0.0 3.5e-32 110.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|304314287|ref|YP_003849434.1| - 1.6e-16 59.1 0.0 2.1e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|304314287|ref|YP_003849434.1| - 8.7e-06 26.0 11.1 8.7e-06 26.0 7.7 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314287|ref|YP_003849434.1| - 1e-05 24.9 12.8 0.0004 19.8 1.6 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314287|ref|YP_003849434.1| - 1.1e-05 25.1 10.9 1.1e-05 25.1 7.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314287|ref|YP_003849434.1| - 9.5e-05 22.5 13.0 9.5e-05 22.5 9.0 2.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314287|ref|YP_003849434.1| - 0.0023 17.8 13.2 0.14 12.2 0.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314287|ref|YP_003849434.1| - 0.0032 18.1 15.0 0.029 15.0 0.4 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain RNA_pol_L_2 PF13656.1 gi|304314287|ref|YP_003849434.1| - 0.017 14.5 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_6 PF12837.2 gi|304314287|ref|YP_003849434.1| - 0.018 14.8 2.2 0.018 14.8 1.5 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314287|ref|YP_003849434.1| - 0.038 13.9 3.1 0.038 13.9 2.1 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304314287|ref|YP_003849434.1| - 0.07 13.5 3.4 0.07 13.5 2.4 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain UPF0254 PF06787.6 gi|304314287|ref|YP_003849434.1| - 0.097 12.1 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) Fer4_18 PF13746.1 gi|304314287|ref|YP_003849434.1| - 0.34 11.3 10.7 0.45 10.9 0.3 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314287|ref|YP_003849434.1| - 2.8 8.5 16.1 1.1 9.9 1.4 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304314287|ref|YP_003849434.1| - 3.2 8.1 21.1 1.7 9.0 2.6 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314287|ref|YP_003849434.1| - 3.5 7.5 17.5 0.46 10.3 0.5 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L18e PF00828.14 gi|304314288|ref|YP_003849435.1| - 4e-18 66.0 0.1 5.2e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF1829 PF08862.5 gi|304314288|ref|YP_003849435.1| - 0.16 12.2 0.3 0.24 11.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF1829 Ribosomal_L13 PF00572.13 gi|304314289|ref|YP_003849436.1| - 2e-27 95.7 0.0 2.3e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|304314290|ref|YP_003849437.1| - 3.8e-36 123.9 0.5 4.3e-36 123.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 SpoVS PF04232.7 gi|304314290|ref|YP_003849437.1| - 0.12 12.0 0.1 0.52 9.9 0.0 1.9 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) RNA_pol_N PF01194.12 gi|304314291|ref|YP_003849438.1| - 2.7e-27 94.5 0.2 2.9e-27 94.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|304314291|ref|YP_003849438.1| - 0.015 15.3 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.17 gi|304314292|ref|YP_003849439.1| - 1.5e-17 63.0 0.1 1.7e-17 62.8 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|304314293|ref|YP_003849440.1| - 4.1e-73 245.9 0.0 5.5e-73 245.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|304314293|ref|YP_003849440.1| - 2.9e-42 143.7 0.1 5.3e-42 142.8 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|304314293|ref|YP_003849440.1| - 0.0026 18.2 0.0 0.0049 17.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|304314293|ref|YP_003849440.1| - 0.0055 16.6 0.0 0.016 15.1 0.0 1.8 1 0 0 1 1 1 1 Enolase C-terminal domain-like 5_3_exonuc_N PF02739.11 gi|304314293|ref|YP_003849440.1| - 0.041 13.2 0.0 0.083 12.2 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Ribosomal_S2 PF00318.15 gi|304314294|ref|YP_003849441.1| - 3.2e-40 137.6 0.0 6.6e-20 71.2 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.12 gi|304314295|ref|YP_003849442.1| - 1e-92 309.9 0.0 1.1e-92 309.7 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|304314295|ref|YP_003849442.1| - 0.0032 16.4 0.1 0.0054 15.7 0.1 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase ETF PF01012.16 gi|304314295|ref|YP_003849442.1| - 0.089 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein domain GHMP_kinases_N PF00288.21 gi|304314296|ref|YP_003849443.1| - 1.4e-16 60.3 0.1 3.2e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|304314296|ref|YP_003849443.1| - 1.4e-11 44.3 0.7 9.2e-11 41.8 0.2 2.4 2 1 1 3 3 3 1 GHMP kinases C terminal DUF1525 PF07511.6 gi|304314296|ref|YP_003849443.1| - 0.032 14.2 0.5 0.096 12.6 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1525) AA_kinase PF00696.23 gi|304314297|ref|YP_003849444.1| - 2.5e-38 132.0 0.0 2.8e-38 131.8 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|304314298|ref|YP_003849445.1| - 2.6e-39 135.1 0.6 7.7e-27 94.0 0.2 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|304314298|ref|YP_003849445.1| - 1.4e-06 27.4 4.3 4.5e-05 22.5 1.1 2.5 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|304314298|ref|YP_003849445.1| - 3e-06 26.3 0.9 0.00059 18.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|304314298|ref|YP_003849445.1| - 8.1e-05 21.9 0.9 0.0064 15.7 0.2 3.2 3 1 0 3 3 3 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|304314298|ref|YP_003849445.1| - 0.00012 21.2 0.4 0.00012 21.2 0.3 2.2 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|304314298|ref|YP_003849445.1| - 0.00015 20.8 2.6 0.00015 20.8 1.8 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase NMO PF03060.10 gi|304314298|ref|YP_003849445.1| - 0.00082 18.6 2.4 0.002 17.3 1.6 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|304314298|ref|YP_003849445.1| - 0.0046 16.0 6.5 0.17 10.9 0.2 2.8 2 1 1 3 3 3 2 Thiazole biosynthesis protein ThiG DeoC PF01791.4 gi|304314298|ref|YP_003849445.1| - 0.97 8.6 4.6 0.46 9.7 0.8 2.2 2 2 1 3 3 3 0 DeoC/LacD family aldolase Lactamase_B PF00753.22 gi|304314299|ref|YP_003849446.1| - 6.5e-20 71.5 0.2 9.1e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|304314299|ref|YP_003849446.1| - 8e-09 35.1 0.2 2e-08 33.8 0.1 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|304314299|ref|YP_003849446.1| - 2e-07 30.7 1.2 3.9e-07 29.8 0.8 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain polyprenyl_synt PF00348.12 gi|304314300|ref|YP_003849447.1| - 2.3e-78 262.6 0.1 2.9e-78 262.3 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase UPF0253 PF06786.7 gi|304314300|ref|YP_003849447.1| - 0.084 12.9 0.0 9.7 6.3 0.0 2.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) DUF1374 PF07118.6 gi|304314300|ref|YP_003849447.1| - 0.1 12.7 0.0 0.28 11.3 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1374) tRNA-synt_1c PF00749.16 gi|304314301|ref|YP_003849448.1| - 9.1e-81 270.9 0.0 1.3e-80 270.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|304314301|ref|YP_003849448.1| - 2e-24 86.1 0.0 3.7e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1d PF00750.14 gi|304314301|ref|YP_003849448.1| - 0.012 14.4 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|304314301|ref|YP_003849448.1| - 0.022 13.4 0.0 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) NTP_transf_2 PF01909.18 gi|304314302|ref|YP_003849449.1| - 6.9e-12 45.5 1.3 7.6e-12 45.3 0.9 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF4269 PF14091.1 gi|304314302|ref|YP_003849449.1| - 0.022 14.7 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) DNA_pol_B_palm PF14792.1 gi|304314302|ref|YP_003849449.1| - 0.093 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.9 gi|304314303|ref|YP_003849450.1| - 1.6e-19 69.9 0.5 1.7e-19 69.8 0.3 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|304314303|ref|YP_003849450.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Aminotran_1_2 PF00155.16 gi|304314304|ref|YP_003849451.1| - 7.9e-31 107.2 0.0 6e-30 104.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Zn_dep_PLPC PF00882.13 gi|304314305|ref|YP_003849452.1| - 8.1e-12 45.0 0.1 9.6e-12 44.8 0.1 1.1 1 0 0 1 1 1 1 Zinc dependent phospholipase C FmdE PF02663.9 gi|304314306|ref|YP_003849453.1| - 5.7e-44 149.1 0.2 3.1e-23 82.0 0.0 3.3 3 0 0 3 3 3 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Aldose_epim PF01263.15 gi|304314307|ref|YP_003849454.1| - 0.13 11.3 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Aldose 1-epimerase Radical_SAM PF04055.16 gi|304314308|ref|YP_003849455.1| - 3.7e-27 95.5 0.3 5.8e-27 94.8 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|304314308|ref|YP_003849455.1| - 4e-09 36.5 0.0 6.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|304314308|ref|YP_003849455.1| - 1.6e-08 34.7 0.0 2.7e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2769 PF10967.3 gi|304314309|ref|YP_003849456.1| - 2.9e-07 30.6 8.8 2.9e-05 24.2 0.9 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2769) DUF2193 PF09959.4 gi|304314310|ref|YP_003849457.1| - 3.1e-299 992.2 5.7 3.4e-299 992.0 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) GrpE PF01025.14 gi|304314310|ref|YP_003849457.1| - 0.98 8.9 6.4 0.77 9.2 0.9 2.3 2 0 0 2 2 2 0 GrpE DUF2180 PF09947.4 gi|304314311|ref|YP_003849458.1| - 9.6e-36 121.3 4.3 1e-35 121.2 3.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.1 gi|304314311|ref|YP_003849458.1| - 0.044 14.1 0.7 0.044 14.1 0.5 1.7 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C3HC4_2 PF13923.1 gi|304314311|ref|YP_003849458.1| - 0.19 11.8 4.4 3 7.9 3.4 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|304314311|ref|YP_003849458.1| - 0.45 10.5 3.1 13 5.8 0.3 2.5 2 1 0 2 2 2 0 zinc-finger Transp_Tc5_C PF04236.10 gi|304314311|ref|YP_003849458.1| - 1 9.6 3.4 4.2 7.6 1.3 2.2 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-C3HC4_3 PF13920.1 gi|304314311|ref|YP_003849458.1| - 1.7 8.3 5.7 8.7 6.1 3.9 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|304314311|ref|YP_003849458.1| - 3.1 7.6 8.2 3 7.6 4.0 2.1 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 MIP PF00230.15 gi|304314312|ref|YP_003849459.1| - 7.3e-51 172.8 17.3 8.3e-51 172.6 12.0 1.0 1 0 0 1 1 1 1 Major intrinsic protein MFS_1 PF07690.11 gi|304314313|ref|YP_003849460.1| - 2.6e-17 62.5 41.7 2.6e-16 59.2 18.1 2.4 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|304314313|ref|YP_003849460.1| - 1e-05 24.3 12.5 1e-05 24.3 8.6 1.9 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|304314313|ref|YP_003849460.1| - 4e-05 22.1 22.3 5.4e-05 21.7 6.5 2.7 2 1 1 3 3 3 2 MFS/sugar transport protein DUF2583 PF10762.4 gi|304314313|ref|YP_003849460.1| - 0.82 9.8 10.1 0.061 13.4 0.7 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2583) MFS_1 PF07690.11 gi|304314314|ref|YP_003849461.1| - 2.5e-18 65.9 3.6 2.7e-18 65.8 2.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|304314314|ref|YP_003849461.1| - 7.5e-10 37.9 0.6 8e-10 37.8 0.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|304314314|ref|YP_003849461.1| - 0.00087 17.7 1.0 0.00091 17.7 0.7 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein DUF791 PF05631.9 gi|304314314|ref|YP_003849461.1| - 0.0026 16.5 0.0 0.0028 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF791) Glu_synthase PF01645.12 gi|304314315|ref|YP_003849462.1| - 1.7e-129 431.9 3.0 1.7e-129 431.9 2.1 1.9 2 1 0 2 2 1 1 Conserved region in glutamate synthase Fer4 PF00037.22 gi|304314315|ref|YP_003849462.1| - 5.8e-16 57.3 69.1 1.4e-07 30.7 1.6 7.6 8 1 0 8 8 7 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314315|ref|YP_003849462.1| - 2.8e-14 52.6 54.5 1.3e-08 34.4 7.3 4.5 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314315|ref|YP_003849462.1| - 9.4e-14 51.5 60.4 1.9e-08 34.5 7.8 5.3 3 1 2 5 5 5 4 4Fe-4S dicluster domain FMN_dh PF01070.13 gi|304314315|ref|YP_003849462.1| - 2.4e-13 49.6 7.2 6.6e-13 48.2 2.9 2.6 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_11 PF13247.1 gi|304314315|ref|YP_003849462.1| - 6.8e-11 41.9 16.9 6.8e-11 41.9 11.7 4.1 3 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314315|ref|YP_003849462.1| - 1.6e-10 40.7 57.9 1.7e-05 24.5 7.4 6.0 3 2 1 5 5 5 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314315|ref|YP_003849462.1| - 1.6e-10 40.3 65.7 5.8e-05 22.7 0.6 7.3 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314315|ref|YP_003849462.1| - 1.2e-08 34.8 43.5 0.0028 17.6 0.1 5.4 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314315|ref|YP_003849462.1| - 1.4e-08 34.1 23.7 3.1e-05 23.6 2.3 7.0 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314315|ref|YP_003849462.1| - 2.4e-08 34.0 63.7 2.7e-05 24.3 8.6 5.5 3 2 4 7 7 7 6 4Fe-4S dicluster domain NMO PF03060.10 gi|304314315|ref|YP_003849462.1| - 2.6e-07 30.1 6.7 4.4e-07 29.3 4.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_17 PF13534.1 gi|304314315|ref|YP_003849462.1| - 5e-07 29.9 39.2 0.087 13.1 0.1 6.3 5 1 0 5 5 5 3 4Fe-4S dicluster domain IMPDH PF00478.20 gi|304314315|ref|YP_003849462.1| - 8.9e-06 24.8 12.4 7.6e-05 21.7 7.0 2.6 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_4 PF12800.2 gi|304314315|ref|YP_003849462.1| - 2.2e-05 24.4 62.3 0.0071 16.6 1.1 7.6 7 1 0 7 7 6 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314315|ref|YP_003849462.1| - 0.0001 22.9 48.7 0.55 11.0 0.7 7.0 4 1 3 7 7 7 3 4Fe-4S double cluster binding domain DHO_dh PF01180.16 gi|304314315|ref|YP_003849462.1| - 0.0018 17.2 2.2 0.0052 15.7 1.5 1.8 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|304314315|ref|YP_003849462.1| - 0.0019 17.2 3.1 0.01 14.9 0.5 2.6 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|304314315|ref|YP_003849462.1| - 0.0066 15.7 0.5 0.015 14.5 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_3 PF12798.2 gi|304314315|ref|YP_003849462.1| - 0.023 15.2 4.9 0.023 15.2 3.4 7.6 7 1 0 7 7 6 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314315|ref|YP_003849462.1| - 0.048 14.2 45.8 0.072 13.6 1.5 5.4 4 1 1 5 5 4 0 4Fe-4S single cluster domain PcrB PF01884.12 gi|304314315|ref|YP_003849462.1| - 0.11 11.7 4.1 0.22 10.7 0.9 2.2 1 1 0 2 2 2 0 PcrB family GXGXG PF01493.14 gi|304314316|ref|YP_003849463.1| - 1.3e-39 135.3 9.7 1.4e-39 135.2 6.7 1.0 1 0 0 1 1 1 1 GXGXG motif TRAM PF01938.15 gi|304314316|ref|YP_003849463.1| - 4.8 7.0 6.0 2.6 7.8 0.8 2.9 2 1 1 3 3 3 0 TRAM domain HTH_5 PF01022.15 gi|304314317|ref|YP_003849464.1| - 3.8e-09 36.0 0.3 5.8e-09 35.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|304314317|ref|YP_003849464.1| - 3.9e-08 32.8 0.3 9.8e-08 31.5 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|304314317|ref|YP_003849464.1| - 1.5e-07 31.1 0.5 2.8e-07 30.2 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|304314317|ref|YP_003849464.1| - 4.4e-07 29.1 0.1 9.3e-07 28.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|304314317|ref|YP_003849464.1| - 7.7e-06 25.4 0.2 1.4e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|304314317|ref|YP_003849464.1| - 8.6e-05 22.2 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|304314317|ref|YP_003849464.1| - 0.00016 21.2 0.1 0.00031 20.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|304314317|ref|YP_003849464.1| - 0.00044 19.8 0.9 0.00092 18.8 0.1 1.9 3 0 0 3 3 3 1 MarR family DUF2250 PF10007.4 gi|304314317|ref|YP_003849464.1| - 0.0015 18.4 0.2 0.0032 17.3 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.1 gi|304314317|ref|YP_003849464.1| - 0.002 18.0 0.1 0.005 16.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|304314317|ref|YP_003849464.1| - 0.0075 15.8 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|304314317|ref|YP_003849464.1| - 0.014 15.0 0.2 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|304314317|ref|YP_003849464.1| - 0.018 15.1 0.1 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator FUR PF01475.14 gi|304314317|ref|YP_003849464.1| - 0.024 14.5 0.1 0.061 13.2 0.0 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_34 PF13601.1 gi|304314317|ref|YP_003849464.1| - 0.042 13.8 0.1 0.1 12.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|304314317|ref|YP_003849464.1| - 0.053 13.3 0.1 0.89 9.3 0.0 2.6 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain RP-C PF03428.8 gi|304314317|ref|YP_003849464.1| - 0.078 12.4 0.2 0.23 10.8 0.0 1.8 1 1 1 2 2 2 0 Replication protein C N-terminal domain HTH_29 PF13551.1 gi|304314317|ref|YP_003849464.1| - 0.12 12.5 0.2 0.27 11.3 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn helix PadR PF03551.9 gi|304314317|ref|YP_003849464.1| - 0.12 12.1 0.0 1.2 9.0 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family Rio2_N PF09202.6 gi|304314317|ref|YP_003849464.1| - 0.14 12.2 0.1 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal RPEL PF02755.10 gi|304314318|ref|YP_003849465.1| - 0.13 11.6 0.1 0.26 10.6 0.1 1.5 1 0 0 1 1 1 0 RPEL repeat CobN-Mg_chel PF02514.11 gi|304314319|ref|YP_003849466.1| - 0.14 9.5 0.0 0.17 9.2 0.0 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase Zn_dep_PLPC PF00882.13 gi|304314320|ref|YP_003849467.1| - 3.4e-09 36.5 0.1 3.9e-09 36.3 0.1 1.1 1 0 0 1 1 1 1 Zinc dependent phospholipase C VIT1 PF01988.14 gi|304314321|ref|YP_003849468.1| - 1.6e-18 66.9 17.6 3e-10 39.9 4.2 2.0 1 1 1 2 2 2 2 VIT family Caveolin PF01146.12 gi|304314321|ref|YP_003849468.1| - 0.023 14.3 2.3 0.036 13.6 1.6 1.5 1 0 0 1 1 1 0 Caveolin DUF1700 PF08006.6 gi|304314321|ref|YP_003849468.1| - 1.1 8.5 6.0 0.6 9.3 2.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) DUF4199 PF13858.1 gi|304314321|ref|YP_003849468.1| - 1.2 9.0 11.6 0.055 13.4 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) DUF204 PF02659.10 gi|304314321|ref|YP_003849468.1| - 6.2 7.0 13.4 0.22 11.6 2.3 3.0 1 1 2 3 3 3 0 Domain of unknown function DUF Radical_SAM PF04055.16 gi|304314322|ref|YP_003849469.1| - 9.8e-12 45.3 0.1 2.1e-11 44.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|304314322|ref|YP_003849469.1| - 8.6e-08 32.4 0.4 2.3e-07 31.0 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|304314322|ref|YP_003849469.1| - 4.4e-05 23.5 0.0 0.00013 21.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|304314322|ref|YP_003849469.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain UPF0547 PF10571.4 gi|304314323|ref|YP_003849470.1| - 0.0002 21.0 4.8 0.0023 17.6 3.3 2.1 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|304314323|ref|YP_003849470.1| - 0.00029 21.0 2.3 0.00033 20.8 1.6 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|304314323|ref|YP_003849470.1| - 0.0032 17.3 4.8 0.37 10.7 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-piccolo PF05715.8 gi|304314323|ref|YP_003849470.1| - 0.013 15.4 0.7 0.016 15.2 0.5 1.1 1 0 0 1 1 1 0 Piccolo Zn-finger zf-C2H2_4 PF13894.1 gi|304314323|ref|YP_003849470.1| - 0.016 15.5 1.3 1.8 9.0 0.0 2.2 2 1 0 2 2 2 0 C2H2-type zinc finger Elf1 PF05129.8 gi|304314323|ref|YP_003849470.1| - 0.016 14.9 3.4 0.018 14.7 2.3 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-Nse PF11789.3 gi|304314323|ref|YP_003849470.1| - 0.022 14.2 3.3 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of the MIZ type in Nse subunit Churchill PF06573.6 gi|304314323|ref|YP_003849470.1| - 0.026 14.5 1.9 0.027 14.4 1.3 1.0 1 0 0 1 1 1 0 Churchill protein zf-DNA_Pol PF08996.5 gi|304314323|ref|YP_003849470.1| - 0.026 13.8 2.4 0.026 13.9 1.7 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger TF_Zn_Ribbon PF08271.7 gi|304314323|ref|YP_003849470.1| - 0.029 13.6 7.5 0.22 10.8 5.2 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|304314323|ref|YP_003849470.1| - 0.037 13.6 5.5 0.15 11.7 3.8 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|304314323|ref|YP_003849470.1| - 0.045 14.1 3.6 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C3HC4_2 PF13923.1 gi|304314323|ref|YP_003849470.1| - 0.057 13.4 1.8 3.6 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|304314323|ref|YP_003849470.1| - 0.058 13.4 4.0 0.53 10.3 0.7 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|304314323|ref|YP_003849470.1| - 0.061 12.9 3.7 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|304314323|ref|YP_003849470.1| - 0.081 12.9 1.9 3.4 7.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 IBR PF01485.16 gi|304314323|ref|YP_003849470.1| - 0.088 12.6 2.3 0.12 12.2 1.6 1.2 1 0 0 1 1 1 0 IBR domain Terminase_GpA PF05876.7 gi|304314323|ref|YP_003849470.1| - 0.099 10.9 2.0 0.1 10.9 1.4 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) ADK_lid PF05191.9 gi|304314323|ref|YP_003849470.1| - 0.1 12.3 4.5 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Endonuclease_7 PF02945.10 gi|304314323|ref|YP_003849470.1| - 0.1 12.3 1.1 0.11 12.2 0.8 1.1 1 0 0 1 1 1 0 Recombination endonuclease VII FdhE PF04216.7 gi|304314323|ref|YP_003849470.1| - 0.11 12.1 0.5 0.12 12.0 0.4 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|304314323|ref|YP_003849470.1| - 0.11 11.7 3.6 2.8 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304314323|ref|YP_003849470.1| - 0.12 11.9 3.3 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|304314323|ref|YP_003849470.1| - 0.18 11.8 8.3 0.81 9.8 5.7 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2296 PF10058.4 gi|304314323|ref|YP_003849470.1| - 0.19 11.5 0.0 0.19 11.5 0.0 1.8 2 0 0 2 2 1 0 Predicted integral membrane metal-binding protein (DUF2296) RecR PF02132.10 gi|304314323|ref|YP_003849470.1| - 0.33 10.4 2.2 3.3 7.2 0.3 2.2 2 0 0 2 2 2 0 RecR protein DNA_RNApol_7kD PF03604.8 gi|304314323|ref|YP_003849470.1| - 0.37 10.2 4.3 3.8 7.0 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-tcix PF14952.1 gi|304314323|ref|YP_003849470.1| - 0.42 9.9 2.7 3.5 7.0 0.5 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-H2C2_2 PF13465.1 gi|304314323|ref|YP_003849470.1| - 0.46 10.8 6.8 1.5 9.2 0.2 2.3 2 1 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|304314323|ref|YP_003849470.1| - 0.49 10.0 6.5 7.2 6.2 4.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|304314323|ref|YP_003849470.1| - 0.57 9.7 5.0 2.3 7.8 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1595 PF12760.2 gi|304314323|ref|YP_003849470.1| - 0.64 9.8 7.7 3.1 7.6 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|304314323|ref|YP_003849470.1| - 0.71 9.7 4.0 1.6 8.5 2.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|304314323|ref|YP_003849470.1| - 0.8 9.6 4.4 1.3 8.9 0.5 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) A2L_zn_ribbon PF08792.5 gi|304314323|ref|YP_003849470.1| - 0.81 9.2 4.1 1.6 8.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain C1_4 PF07975.7 gi|304314323|ref|YP_003849470.1| - 0.82 9.7 4.9 1.6 8.8 0.6 2.1 1 1 1 2 2 2 0 TFIIH C1-like domain DUF2256 PF10013.4 gi|304314323|ref|YP_003849470.1| - 0.91 9.3 4.6 10 5.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zinc_ribbon_4 PF13717.1 gi|304314323|ref|YP_003849470.1| - 0.97 9.1 6.4 12 5.6 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|304314323|ref|YP_003849470.1| - 1.1 9.2 4.7 12 5.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Nudix_N_2 PF14803.1 gi|304314323|ref|YP_003849470.1| - 1.2 8.9 7.0 5.3 6.8 4.9 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|304314323|ref|YP_003849470.1| - 1.6 8.2 5.8 5.6 6.5 0.9 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.7 gi|304314323|ref|YP_003849470.1| - 2.3 7.9 5.8 8.9 6.0 4.0 1.9 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger SOUL PF04832.7 gi|304314325|ref|YP_003849472.1| - 1.9e-54 183.8 0.0 4.4e-54 182.6 0.0 1.5 1 1 0 1 1 1 1 SOUL heme-binding protein Nitroreductase PF00881.19 gi|304314326|ref|YP_003849473.1| - 4.4e-23 81.8 0.0 6e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family PMBR PF09373.5 gi|304314327|ref|YP_003849474.1| - 3.7e-15 55.0 3.2 7e-09 35.2 0.4 2.7 2 0 0 2 2 2 2 Pseudomurein-binding repeat DZR PF12773.2 gi|304314328|ref|YP_003849475.1| - 0.0063 16.2 0.7 0.0082 15.9 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|304314328|ref|YP_003849475.1| - 0.023 14.3 0.6 0.036 13.7 0.4 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.7 gi|304314328|ref|YP_003849475.1| - 0.058 13.1 0.2 0.066 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Cys_rich_CPXG PF14255.1 gi|304314328|ref|YP_003849475.1| - 0.062 13.1 0.9 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF2072 PF09845.4 gi|304314328|ref|YP_003849475.1| - 0.091 12.6 0.2 0.092 12.6 0.2 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-RING_2 PF13639.1 gi|304314328|ref|YP_003849475.1| - 0.095 12.5 1.4 0.18 11.6 1.0 1.4 1 1 0 1 1 1 0 Ring finger domain HypA PF01155.14 gi|304314328|ref|YP_003849475.1| - 0.13 11.9 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|304314328|ref|YP_003849475.1| - 0.16 11.3 1.2 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|304314328|ref|YP_003849475.1| - 0.16 11.8 1.3 0.41 10.4 0.9 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C3HC4_2 PF13923.1 gi|304314328|ref|YP_003849475.1| - 0.19 11.7 2.2 0.3 11.1 1.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|304314328|ref|YP_003849475.1| - 0.22 11.2 0.8 1.4 8.6 0.2 2.1 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family TFIIS_C PF01096.13 gi|304314328|ref|YP_003849475.1| - 0.25 11.0 2.5 11 5.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|304314328|ref|YP_003849475.1| - 0.27 10.9 1.7 0.42 10.3 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|304314328|ref|YP_003849475.1| - 0.33 10.2 4.8 1.2 8.4 1.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304314328|ref|YP_003849475.1| - 1.4 8.4 5.7 4.6 6.8 4.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF2175 PF09943.4 gi|304314328|ref|YP_003849475.1| - 3.9 7.5 4.8 1.1e+02 2.8 3.3 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) HisG PF01634.13 gi|304314329|ref|YP_003849476.1| - 6.2e-53 178.7 0.0 8.2e-53 178.3 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|304314329|ref|YP_003849476.1| - 0.00014 21.6 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Nitroreductase PF00881.19 gi|304314330|ref|YP_003849477.1| - 5.7e-34 117.3 0.0 7.4e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|304314330|ref|YP_003849477.1| - 0.0077 15.4 0.2 0.27 10.3 0.1 2.5 2 1 1 3 3 3 2 Putative TM nitroreductase UPF0547 PF10571.4 gi|304314331|ref|YP_003849478.1| - 0.0003 20.4 6.6 0.013 15.1 0.0 2.5 3 0 0 3 3 3 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|304314331|ref|YP_003849478.1| - 0.0012 17.9 4.8 0.012 14.8 3.3 2.3 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|304314331|ref|YP_003849478.1| - 0.0018 18.5 3.5 0.0022 18.2 2.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|304314331|ref|YP_003849478.1| - 0.0026 17.2 2.6 0.019 14.5 0.1 2.6 2 1 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|304314331|ref|YP_003849478.1| - 0.0036 16.5 5.5 0.15 11.4 0.2 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|304314331|ref|YP_003849478.1| - 0.01 15.2 3.1 1.3 8.6 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|304314331|ref|YP_003849478.1| - 0.012 15.2 3.4 0.055 13.1 0.2 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|304314331|ref|YP_003849478.1| - 0.013 15.7 1.4 0.54 10.6 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double domain RNA_POL_M_15KD PF02150.11 gi|304314331|ref|YP_003849478.1| - 0.015 14.9 4.4 0.079 12.6 0.4 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|304314331|ref|YP_003849478.1| - 0.073 12.6 2.2 0.3 10.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.5 gi|304314331|ref|YP_003849478.1| - 0.14 12.1 6.8 1.7 8.6 0.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|304314331|ref|YP_003849478.1| - 0.16 11.6 0.2 0.16 11.6 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.6 gi|304314331|ref|YP_003849478.1| - 0.4 10.3 5.3 3.4 7.3 0.1 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Ribosomal_S27e PF01667.12 gi|304314331|ref|YP_003849478.1| - 0.98 9.0 5.5 0.86 9.1 1.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|304314331|ref|YP_003849478.1| - 1.2 9.2 5.1 1.7 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.14 gi|304314331|ref|YP_003849478.1| - 1.2 8.8 4.0 14 5.3 0.1 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2387 PF09526.5 gi|304314331|ref|YP_003849478.1| - 1.2 9.0 5.4 44 4.0 3.8 2.2 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) YhfH PF14149.1 gi|304314331|ref|YP_003849478.1| - 2.4 8.0 7.1 4.3 7.2 0.5 2.3 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.2 gi|304314331|ref|YP_003849478.1| - 3.1 7.6 6.4 17 5.3 4.4 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|304314331|ref|YP_003849478.1| - 3.9 8.0 8.3 16 6.1 1.5 2.6 2 1 0 2 2 2 0 Zinc finger, C2H2 type NUDIX PF00293.23 gi|304314332|ref|YP_003849479.1| - 9.8e-22 77.0 0.0 1.3e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|304314332|ref|YP_003849479.1| - 6.6e-06 25.5 0.0 8.9e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain HATPase_c PF02518.21 gi|304314333|ref|YP_003849480.1| - 0.0023 17.6 0.0 0.0025 17.4 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3475 PF11961.3 gi|304314333|ref|YP_003849480.1| - 0.093 12.5 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3475) HisKA_2 PF07568.7 gi|304314334|ref|YP_003849481.1| - 3.1e-26 91.0 0.5 6.6e-26 89.9 0.4 1.6 1 0 0 1 1 1 1 Histidine kinase HWE_HK PF07536.9 gi|304314334|ref|YP_003849481.1| - 6.7e-06 26.4 0.1 1.5e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase Sec2p PF06428.6 gi|304314334|ref|YP_003849481.1| - 0.0057 16.4 3.1 0.012 15.4 2.2 1.6 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p HATPase_c PF02518.21 gi|304314334|ref|YP_003849481.1| - 0.1 12.3 0.1 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF972 PF06156.8 gi|304314334|ref|YP_003849481.1| - 0.48 10.8 2.9 0.95 9.8 2.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) B12-binding PF02310.14 gi|304314335|ref|YP_003849482.1| - 1.3e-21 76.7 0.0 3.6e-21 75.2 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|304314335|ref|YP_003849482.1| - 7.3e-19 67.5 0.0 1.7e-18 66.3 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Phycobilisome PF00502.14 gi|304314335|ref|YP_003849482.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 2 0 0 2 2 2 0 Phycobilisome protein TFIIE-A_C-term PF11521.3 gi|304314335|ref|YP_003849482.1| - 0.14 12.1 0.0 0.4 10.6 0.0 1.7 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha HrcA_DNA-bdg PF03444.10 gi|304314337|ref|YP_003849484.1| - 2.3e-38 129.4 1.9 2.7e-38 129.2 0.4 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|304314337|ref|YP_003849484.1| - 7e-33 112.1 4.8 8.6e-19 67.0 0.2 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|304314337|ref|YP_003849484.1| - 1.1e-08 35.1 0.1 2.7e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|304314337|ref|YP_003849484.1| - 1.8e-06 27.5 0.1 4e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|304314337|ref|YP_003849484.1| - 0.0009 18.7 0.1 0.0026 17.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|304314337|ref|YP_003849484.1| - 0.019 14.6 0.0 0.055 13.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|304314337|ref|YP_003849484.1| - 0.02 14.2 0.9 0.26 10.6 0.4 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|304314337|ref|YP_003849484.1| - 0.032 13.9 0.0 0.071 12.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|304314337|ref|YP_003849484.1| - 0.039 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 MarR family DS PF01916.12 gi|304314338|ref|YP_003849485.1| - 7.5e-111 370.0 0.0 8.6e-111 369.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|304314340|ref|YP_003849487.1| - 2.1e-41 141.7 0.0 2.9e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|304314340|ref|YP_003849487.1| - 0.036 13.3 0.1 1.1 8.5 0.0 2.3 1 1 1 2 2 2 0 PcrB family PEP_mutase PF13714.1 gi|304314340|ref|YP_003849487.1| - 0.065 12.4 0.1 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase CbiM PF01891.11 gi|304314341|ref|YP_003849488.1| - 1.2e-57 194.8 14.2 1.4e-57 194.6 9.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|304314342|ref|YP_003849489.1| - 5.3e-34 116.0 0.2 6.4e-34 115.7 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN EpuA PF11772.3 gi|304314342|ref|YP_003849489.1| - 8 5.9 6.7 12 5.4 0.4 2.2 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta CbiQ PF02361.11 gi|304314343|ref|YP_003849490.1| - 7e-50 169.6 8.6 9.1e-50 169.2 5.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC2_membrane_4 PF12730.2 gi|304314343|ref|YP_003849490.1| - 9.2 5.3 23.7 0.1 11.7 5.2 2.3 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|304314344|ref|YP_003849491.1| - 2.1e-34 118.7 0.0 3.4e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314344|ref|YP_003849491.1| - 2.7e-18 66.9 0.2 9.7e-14 51.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|304314344|ref|YP_003849491.1| - 1.5e-08 34.1 0.0 1.3e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|304314344|ref|YP_003849491.1| - 1.2e-05 24.5 0.0 8.1e-05 21.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|304314344|ref|YP_003849491.1| - 0.00018 20.9 0.1 0.00034 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|304314344|ref|YP_003849491.1| - 0.00061 20.1 0.1 0.00094 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|304314344|ref|YP_003849491.1| - 0.0016 18.3 0.0 0.019 14.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|304314344|ref|YP_003849491.1| - 0.0021 16.6 0.0 0.2 10.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|304314344|ref|YP_003849491.1| - 0.0038 16.6 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF258 PF03193.11 gi|304314344|ref|YP_003849491.1| - 0.038 13.1 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|304314344|ref|YP_003849491.1| - 0.069 12.5 0.2 0.16 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|304314344|ref|YP_003849491.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RecA PF00154.16 gi|304314344|ref|YP_003849491.1| - 0.15 11.0 0.0 3.1 6.7 0.0 2.1 1 1 1 2 2 2 0 recA bacterial DNA recombination protein DMRL_synthase PF00885.14 gi|304314345|ref|YP_003849492.1| - 1.9e-19 69.7 0.0 2.2e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FMN_red PF03358.10 gi|304314346|ref|YP_003849493.1| - 1.5e-36 125.2 0.0 1.8e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|304314346|ref|YP_003849493.1| - 5.8e-11 42.2 0.0 7.3e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|304314346|ref|YP_003849493.1| - 0.013 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain Glycos_transf_2 PF00535.21 gi|304314347|ref|YP_003849494.1| - 3e-36 124.6 0.0 3.8e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304314347|ref|YP_003849494.1| - 1e-11 45.0 0.0 1.4e-11 44.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|304314347|ref|YP_003849494.1| - 2.7e-07 30.8 0.0 3.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|304314347|ref|YP_003849494.1| - 0.018 14.1 0.0 0.024 13.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|304314347|ref|YP_003849494.1| - 0.031 13.5 0.1 0.13 11.5 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 21 Band_7 PF01145.20 gi|304314347|ref|YP_003849494.1| - 0.031 14.1 0.0 0.049 13.5 0.0 1.4 1 1 0 1 1 1 0 SPFH domain / Band 7 family Helicase_C_2 PF13307.1 gi|304314347|ref|YP_003849494.1| - 0.053 13.4 0.0 0.073 13.0 0.0 1.2 1 0 0 1 1 1 0 Helicase C-terminal domain Osmo_MPGsynth PF09488.5 gi|304314347|ref|YP_003849494.1| - 0.084 11.5 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) HEM4 PF02602.10 gi|304314347|ref|YP_003849494.1| - 0.14 11.4 0.1 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Fe-ADH PF00465.14 gi|304314347|ref|YP_003849494.1| - 0.17 10.5 0.0 0.23 10.0 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DUF2304 PF10066.4 gi|304314348|ref|YP_003849495.1| - 1.2e-36 125.0 3.5 1.3e-36 124.9 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) YvrJ PF12841.2 gi|304314348|ref|YP_003849495.1| - 0.11 11.8 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 YvrJ protein family AA_permease_2 PF13520.1 gi|304314348|ref|YP_003849495.1| - 0.16 10.4 4.7 0.2 10.1 3.2 1.2 1 0 0 1 1 1 0 Amino acid permease DUF4199 PF13858.1 gi|304314348|ref|YP_003849495.1| - 0.22 11.4 3.0 0.29 11.0 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF1049 PF06305.6 gi|304314348|ref|YP_003849495.1| - 0.31 10.5 6.0 1.4 8.4 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) Glycos_transf_1 PF00534.15 gi|304314349|ref|YP_003849496.1| - 1.2e-36 125.7 0.0 2.7e-36 124.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|304314349|ref|YP_003849496.1| - 1.4e-17 64.1 0.0 8.7e-17 61.5 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|304314349|ref|YP_003849496.1| - 3.6e-14 52.8 0.0 5.8e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|304314349|ref|YP_003849496.1| - 1.4e-08 35.0 0.0 2.2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|304314349|ref|YP_003849496.1| - 5.5e-07 29.7 0.0 4e-06 27.0 0.0 2.4 3 0 0 3 3 3 1 Glycosyl transferases group 1 CCG PF02754.11 gi|304314350|ref|YP_003849497.1| - 1.9e-32 111.1 3.1 8.5e-18 64.1 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich domain DUF162 PF02589.10 gi|304314351|ref|YP_003849498.1| - 3.4e-38 131.0 0.4 6.4e-38 130.1 0.3 1.4 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|304314351|ref|YP_003849498.1| - 1e-11 44.7 2.8 2.3e-11 43.5 1.8 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314351|ref|YP_003849498.1| - 1.5e-09 37.9 2.5 4.4e-09 36.4 1.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314351|ref|YP_003849498.1| - 3.1e-09 37.0 1.4 1.2e-08 35.1 1.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314351|ref|YP_003849498.1| - 1.3e-08 34.4 2.6 2.7e-08 33.4 1.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314351|ref|YP_003849498.1| - 1.5e-08 34.8 2.3 0.0019 18.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314351|ref|YP_003849498.1| - 7.6e-08 32.6 5.0 8.7e-08 32.4 2.5 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314351|ref|YP_003849498.1| - 1.3e-07 30.9 14.5 0.0014 18.1 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314351|ref|YP_003849498.1| - 6e-06 25.8 12.1 0.0016 18.2 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314351|ref|YP_003849498.1| - 1.3e-05 24.9 6.6 0.011 15.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314351|ref|YP_003849498.1| - 2.3e-05 24.3 9.7 0.004 17.3 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304314351|ref|YP_003849498.1| - 0.00025 21.3 17.5 0.063 13.8 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314351|ref|YP_003849498.1| - 0.0022 17.7 14.7 0.05 13.5 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314351|ref|YP_003849498.1| - 0.0064 17.2 8.2 0.86 10.3 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|304314351|ref|YP_003849498.1| - 0.17 11.5 1.2 9.8 5.8 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|304314351|ref|YP_003849498.1| - 0.24 11.9 6.5 1.4 9.5 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF556 PF04476.8 gi|304314352|ref|YP_003849499.1| - 9.9e-130 430.7 3.2 1.1e-129 430.6 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) DeoC PF01791.4 gi|304314352|ref|YP_003849499.1| - 0.0019 17.5 2.3 0.0077 15.5 1.2 2.1 1 1 0 1 1 1 1 DeoC/LacD family aldolase QRPTase_C PF01729.14 gi|304314352|ref|YP_003849499.1| - 0.0024 17.4 0.2 0.048 13.1 0.1 2.3 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.20 gi|304314353|ref|YP_003849500.1| - 1e-140 468.6 5.9 1.2e-140 468.4 4.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|304314353|ref|YP_003849500.1| - 5.4e-31 106.1 5.9 5.8e-15 54.8 0.5 2.8 2 0 0 2 2 2 2 CBS domain FMN_dh PF01070.13 gi|304314353|ref|YP_003849500.1| - 7.2e-11 41.5 3.9 1.4e-10 40.5 1.7 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|304314353|ref|YP_003849500.1| - 1.1e-10 41.1 5.3 1.7e-05 24.1 2.7 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase Glu_synthase PF01645.12 gi|304314353|ref|YP_003849500.1| - 2.3e-06 26.7 3.1 5.7e-06 25.5 2.1 1.6 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|304314353|ref|YP_003849500.1| - 0.00016 20.9 2.0 0.003 16.8 1.4 2.4 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|304314353|ref|YP_003849500.1| - 0.00036 19.7 1.6 0.00085 18.4 1.1 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|304314353|ref|YP_003849500.1| - 0.0051 15.6 0.2 0.0095 14.8 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|304314353|ref|YP_003849500.1| - 0.047 12.9 3.1 0.058 12.6 0.3 2.3 2 0 0 2 2 2 0 PcrB family NeuB PF03102.9 gi|304314353|ref|YP_003849500.1| - 0.06 12.4 0.2 0.85 8.7 0.0 2.6 4 0 0 4 4 4 0 NeuB family H_kinase_N PF12282.3 gi|304314353|ref|YP_003849500.1| - 0.12 12.0 0.3 0.56 9.8 0.1 2.0 1 1 1 2 2 2 0 Signal transduction histidine kinase NTP_transf_3 PF12804.2 gi|304314354|ref|YP_003849501.1| - 3e-28 98.9 0.0 3.7e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain PMBR PF09373.5 gi|304314355|ref|YP_003849502.1| - 1.8e-18 65.4 0.2 6.9e-09 35.2 0.0 2.0 2 0 0 2 2 2 2 Pseudomurein-binding repeat DUF4524 PF15025.1 gi|304314355|ref|YP_003849502.1| - 0.12 11.8 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4524) Methyltransf_18 PF12847.2 gi|304314357|ref|YP_003849504.1| - 1.2e-19 70.9 0.2 1.7e-19 70.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314357|ref|YP_003849504.1| - 6.5e-13 48.5 0.0 9.6e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304314357|ref|YP_003849504.1| - 5.9e-10 38.7 0.2 1.3e-09 37.6 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|304314357|ref|YP_003849504.1| - 3.5e-08 33.4 0.1 8.7e-08 32.2 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|304314357|ref|YP_003849504.1| - 6.3e-08 32.3 0.0 8e-08 32.0 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|304314357|ref|YP_003849504.1| - 8.9e-08 32.5 0.0 1.8e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|304314357|ref|YP_003849504.1| - 9.1e-08 31.8 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|304314357|ref|YP_003849504.1| - 1e-07 32.1 0.0 8.3e-07 29.3 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|304314357|ref|YP_003849504.1| - 4.4e-07 29.4 0.0 9.6e-07 28.3 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|304314357|ref|YP_003849504.1| - 9.5e-07 29.6 0.0 1.6e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|304314357|ref|YP_003849504.1| - 2.5e-06 26.8 0.1 3.2e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|304314357|ref|YP_003849504.1| - 2.6e-06 26.7 0.2 6.8e-06 25.3 0.1 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family DUF633 PF04816.7 gi|304314357|ref|YP_003849504.1| - 6e-06 25.7 0.1 6.9e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF633) UPF0020 PF01170.13 gi|304314357|ref|YP_003849504.1| - 9e-06 25.3 0.3 1.7e-05 24.4 0.1 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|304314357|ref|YP_003849504.1| - 4.6e-05 23.8 0.1 8.4e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|304314357|ref|YP_003849504.1| - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_3 PF01596.12 gi|304314357|ref|YP_003849504.1| - 0.00059 18.9 0.0 0.0014 17.7 0.0 1.5 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|304314357|ref|YP_003849504.1| - 0.00059 19.5 0.0 0.0021 17.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|304314357|ref|YP_003849504.1| - 0.00066 19.1 0.0 0.0011 18.3 0.0 1.3 1 1 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|304314357|ref|YP_003849504.1| - 0.00074 18.6 0.0 0.002 17.2 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.15 gi|304314357|ref|YP_003849504.1| - 0.0012 18.0 0.0 0.0015 17.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|304314357|ref|YP_003849504.1| - 0.0016 18.4 0.0 0.0044 17.0 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.10 gi|304314357|ref|YP_003849504.1| - 0.0043 16.2 0.2 0.14 11.2 0.0 2.0 1 1 1 2 2 2 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|304314357|ref|YP_003849504.1| - 0.0045 16.1 0.0 0.0083 15.3 0.0 1.6 1 1 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|304314357|ref|YP_003849504.1| - 0.0055 15.7 0.0 0.0072 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|304314357|ref|YP_003849504.1| - 0.015 13.9 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PRMT5 PF05185.11 gi|304314357|ref|YP_003849504.1| - 0.094 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_32 PF13679.1 gi|304314357|ref|YP_003849504.1| - 0.14 11.8 0.0 0.35 10.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Flavoprotein PF02441.14 gi|304314358|ref|YP_003849505.1| - 4e-29 100.9 0.0 5.3e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|304314359|ref|YP_003849506.1| - 1.7e-14 53.8 0.4 3.9e-14 52.6 0.2 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|304314359|ref|YP_003849506.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 HDOD domain MoaE PF02391.12 gi|304314360|ref|YP_003849507.1| - 4.9e-30 103.7 0.1 6.1e-30 103.4 0.1 1.1 1 0 0 1 1 1 1 MoaE protein CTP_transf_2 PF01467.21 gi|304314361|ref|YP_003849508.1| - 8.2e-20 71.4 0.0 1e-19 71.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase ABC_tran PF00005.22 gi|304314362|ref|YP_003849509.1| - 5.1e-52 175.8 0.0 1e-24 87.3 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|304314362|ref|YP_003849509.1| - 1.4e-14 54.7 0.4 0.0016 18.4 0.0 4.4 3 1 1 4 4 4 3 AAA domain AAA_22 PF13401.1 gi|304314362|ref|YP_003849509.1| - 3.2e-10 40.2 0.3 0.056 13.5 0.0 4.3 4 1 0 4 4 4 3 AAA domain AAA_15 PF13175.1 gi|304314362|ref|YP_003849509.1| - 7.9e-10 38.3 0.0 0.097 11.6 0.0 4.1 4 0 0 4 4 4 3 AAA ATPase domain AAA_10 PF12846.2 gi|304314362|ref|YP_003849509.1| - 4.7e-07 29.5 3.2 0.99 8.7 0.0 4.8 3 1 2 5 5 5 1 AAA-like domain AAA_16 PF13191.1 gi|304314362|ref|YP_003849509.1| - 5.7e-07 29.7 3.3 0.019 14.9 0.2 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|304314362|ref|YP_003849509.1| - 4.8e-06 27.0 0.1 0.088 13.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|304314362|ref|YP_003849509.1| - 6.9e-06 25.6 0.7 2.1 7.7 0.1 4.5 4 1 0 4 4 4 1 AAA domain DUF258 PF03193.11 gi|304314362|ref|YP_003849509.1| - 9.4e-06 24.9 0.0 0.11 11.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|304314362|ref|YP_003849509.1| - 1.4e-05 24.4 0.6 0.051 12.8 0.0 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|304314362|ref|YP_003849509.1| - 1.9e-05 24.1 0.1 0.26 10.8 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|304314362|ref|YP_003849509.1| - 2.9e-05 23.8 0.2 0.0087 15.9 0.0 3.6 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|304314362|ref|YP_003849509.1| - 3.3e-05 22.8 0.2 0.035 12.9 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_18 PF13238.1 gi|304314362|ref|YP_003849509.1| - 4e-05 23.9 0.3 0.069 13.4 0.0 3.8 4 0 0 4 4 3 1 AAA domain AAA_14 PF13173.1 gi|304314362|ref|YP_003849509.1| - 6.3e-05 22.8 0.0 1.1 9.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_24 PF13479.1 gi|304314362|ref|YP_003849509.1| - 0.00011 21.8 0.5 1.8 8.1 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|304314362|ref|YP_003849509.1| - 0.00016 22.4 6.7 0.19 12.5 0.7 3.8 2 2 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|304314362|ref|YP_003849509.1| - 0.00026 20.6 0.2 0.15 11.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|304314362|ref|YP_003849509.1| - 0.00036 20.2 0.4 0.68 9.6 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|304314362|ref|YP_003849509.1| - 0.0006 19.6 0.2 0.76 9.6 0.1 2.7 2 1 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|304314362|ref|YP_003849509.1| - 0.0014 17.7 0.6 0.22 10.5 0.0 3.3 3 0 0 3 3 3 1 KaiC PduV-EutP PF10662.4 gi|304314362|ref|YP_003849509.1| - 0.0015 18.0 0.0 1.5 8.3 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|304314362|ref|YP_003849509.1| - 0.0019 17.9 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 2 Archaeal ATPase T2SE PF00437.15 gi|304314362|ref|YP_003849509.1| - 0.0024 16.8 0.5 0.44 9.4 0.0 3.0 4 0 0 4 4 3 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|304314362|ref|YP_003849509.1| - 0.0024 17.6 0.4 1.1 9.0 0.0 2.9 2 0 0 2 2 2 1 Part of AAA domain NACHT PF05729.7 gi|304314362|ref|YP_003849509.1| - 0.0032 17.1 2.8 0.99 9.0 0.2 2.6 2 0 0 2 2 2 2 NACHT domain AAA_30 PF13604.1 gi|304314362|ref|YP_003849509.1| - 0.004 16.7 0.1 2.8 7.4 0.0 2.7 3 0 0 3 3 3 1 AAA domain cobW PF02492.14 gi|304314362|ref|YP_003849509.1| - 0.0048 16.3 2.2 0.78 9.1 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|304314362|ref|YP_003849509.1| - 0.0052 16.7 0.0 3.3 7.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|304314362|ref|YP_003849509.1| - 0.0069 16.8 0.0 2.9 8.4 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein AAA PF00004.24 gi|304314362|ref|YP_003849509.1| - 0.011 15.8 0.0 12 6.0 0.0 3.7 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|304314362|ref|YP_003849509.1| - 0.016 14.4 0.0 1 8.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|304314362|ref|YP_003849509.1| - 0.021 13.9 0.0 2.4 7.2 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|304314362|ref|YP_003849509.1| - 0.036 13.5 0.0 9.4 5.6 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|304314362|ref|YP_003849509.1| - 0.047 13.4 0.3 0.56 9.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|304314362|ref|YP_003849509.1| - 0.062 13.2 0.2 6.3 6.7 0.2 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.13 gi|304314362|ref|YP_003849509.1| - 0.063 12.8 0.0 5 6.6 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.12 gi|304314362|ref|YP_003849509.1| - 0.093 12.1 0.0 1.7 8.0 0.0 2.7 3 0 0 3 3 2 0 IstB-like ATP binding protein Pox_A32 PF04665.7 gi|304314362|ref|YP_003849509.1| - 0.11 11.7 1.6 7 5.8 0.1 2.6 3 0 0 3 3 3 0 Poxvirus A32 protein ABC_ATPase PF09818.4 gi|304314362|ref|YP_003849509.1| - 0.14 10.7 0.2 21 3.5 0.0 3.1 3 0 0 3 3 3 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|304314362|ref|YP_003849509.1| - 0.17 11.3 0.1 5.8 6.3 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Flavin_Reduct PF01613.13 gi|304314363|ref|YP_003849510.1| - 6.2e-30 104.0 0.2 7.7e-30 103.7 0.1 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|304314363|ref|YP_003849510.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxidase PF01243.15 gi|304314363|ref|YP_003849510.1| - 0.071 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|304314364|ref|YP_003849511.1| - 9.7e-31 106.8 1.7 1.1e-30 106.6 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2976 PF11190.3 gi|304314365|ref|YP_003849512.1| - 0.0051 16.2 0.6 0.0078 15.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2976) DAGK_prokar PF01219.14 gi|304314365|ref|YP_003849512.1| - 0.062 12.8 0.0 0.067 12.7 0.0 1.0 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase DUF3040 PF11239.3 gi|304314365|ref|YP_003849512.1| - 0.12 12.4 0.7 0.12 12.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Beta_helix PF13229.1 gi|304314366|ref|YP_003849513.1| - 1.1e-16 61.0 137.5 3.5e-09 36.6 23.5 4.1 2 1 3 5 5 5 4 Right handed beta helix region PMBR PF09373.5 gi|304314366|ref|YP_003849513.1| - 1.1e-10 40.9 8.4 6.9e-06 25.7 0.6 3.8 4 0 0 4 4 4 2 Pseudomurein-binding repeat TMPIT PF07851.8 gi|304314366|ref|YP_003849513.1| - 0.004 16.2 5.0 2.3 7.2 0.0 3.3 3 0 0 3 3 3 3 TMPIT-like protein Chlam_PMP PF02415.12 gi|304314366|ref|YP_003849513.1| - 0.0095 16.1 89.5 0.12 12.7 0.1 13.8 13 1 0 13 13 13 6 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Fn3-like PF14310.1 gi|304314366|ref|YP_003849513.1| - 0.053 13.4 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 Fibronectin type III-like domain Rubredoxin PF00301.15 gi|304314367|ref|YP_003849514.1| - 4.7e-25 87.2 4.6 5.2e-25 87.0 3.2 1.0 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|304314367|ref|YP_003849514.1| - 0.0051 16.3 0.4 0.26 10.8 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.5 gi|304314367|ref|YP_003849514.1| - 0.0069 16.3 3.1 0.29 11.1 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|304314367|ref|YP_003849514.1| - 0.0072 15.5 2.5 0.093 11.9 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|304314367|ref|YP_003849514.1| - 0.0082 15.5 2.4 0.23 10.9 0.9 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.11 gi|304314367|ref|YP_003849514.1| - 0.017 14.7 3.2 0.2 11.3 0.4 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|304314367|ref|YP_003849514.1| - 0.023 14.0 2.2 2.1 7.7 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|304314367|ref|YP_003849514.1| - 0.024 14.3 1.4 2.1 8.0 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|304314367|ref|YP_003849514.1| - 0.031 13.9 0.2 0.038 13.6 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Elf1 PF05129.8 gi|304314367|ref|YP_003849514.1| - 0.037 13.7 0.7 0.6 9.8 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.1 gi|304314367|ref|YP_003849514.1| - 0.04 14.2 3.1 1.8 9.0 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DUF2296 PF10058.4 gi|304314367|ref|YP_003849514.1| - 0.041 13.6 2.4 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ISL3 PF14690.1 gi|304314367|ref|YP_003849514.1| - 0.044 13.8 3.6 0.66 10.0 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|304314367|ref|YP_003849514.1| - 0.044 13.6 1.6 1.4 8.7 1.2 2.1 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|304314367|ref|YP_003849514.1| - 0.049 13.2 2.1 1.2 8.8 1.3 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|304314367|ref|YP_003849514.1| - 0.049 13.1 3.1 0.32 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-nanos PF05741.8 gi|304314367|ref|YP_003849514.1| - 0.061 13.3 1.0 9.1 6.3 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain DUF4109 PF13397.1 gi|304314367|ref|YP_003849514.1| - 0.065 13.6 0.5 0.23 11.8 0.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4109) Zn_Tnp_IS1595 PF12760.2 gi|304314367|ref|YP_003849514.1| - 0.092 12.5 3.5 1.4 8.8 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|304314367|ref|YP_003849514.1| - 0.15 11.6 1.6 1.8 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|304314367|ref|YP_003849514.1| - 0.17 11.5 1.6 2.4 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|304314367|ref|YP_003849514.1| - 0.2 10.8 3.3 0.31 10.1 0.5 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF35_N PF12172.3 gi|304314367|ref|YP_003849514.1| - 0.2 11.5 2.4 2 8.4 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2 PF00096.21 gi|304314367|ref|YP_003849514.1| - 0.22 11.9 4.1 7.6 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_3 PF13878.1 gi|304314367|ref|YP_003849514.1| - 0.23 11.0 2.0 1.1 8.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2_4 PF13894.1 gi|304314367|ref|YP_003849514.1| - 0.28 11.6 2.0 9.4 6.8 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|304314367|ref|YP_003849514.1| - 0.32 10.6 4.3 3.5 7.3 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-HIT PF04438.11 gi|304314367|ref|YP_003849514.1| - 0.36 10.4 6.3 7.3 6.3 1.5 2.2 2 0 0 2 2 2 0 HIT zinc finger DUF1610 PF07754.6 gi|304314367|ref|YP_003849514.1| - 0.48 10.5 3.2 2.7 8.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0547 PF10571.4 gi|304314367|ref|YP_003849514.1| - 0.69 9.6 3.8 6.2 6.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.8 gi|304314367|ref|YP_003849514.1| - 0.72 9.4 4.4 13 5.3 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-IS66 PF13005.2 gi|304314367|ref|YP_003849514.1| - 0.87 9.6 3.5 6.5 6.8 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ADK_lid PF05191.9 gi|304314367|ref|YP_003849514.1| - 1.5 8.5 5.4 4.4 7.0 0.4 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|304314368|ref|YP_003849515.1| - 1.8e-27 94.9 3.8 2e-27 94.8 2.6 1.0 1 0 0 1 1 1 1 Rubredoxin A2L_zn_ribbon PF08792.5 gi|304314368|ref|YP_003849515.1| - 0.0045 16.3 2.3 0.29 10.6 0.3 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|304314368|ref|YP_003849515.1| - 0.0058 15.9 2.0 0.82 9.0 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|304314368|ref|YP_003849515.1| - 0.0098 15.4 0.1 1.1 8.8 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|304314368|ref|YP_003849515.1| - 0.044 12.8 0.3 0.044 12.8 0.2 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.5 gi|304314368|ref|YP_003849515.1| - 0.05 13.5 1.5 5.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|304314368|ref|YP_003849515.1| - 0.093 12.4 1.5 0.44 10.2 1.0 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-nanos PF05741.8 gi|304314368|ref|YP_003849515.1| - 0.12 12.3 0.5 14 5.7 0.0 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zf-C2H2_4 PF13894.1 gi|304314368|ref|YP_003849515.1| - 0.15 12.4 0.5 14 6.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Prim_Zn_Ribbon PF08273.7 gi|304314368|ref|YP_003849515.1| - 0.26 11.4 3.7 0.48 10.5 0.1 2.3 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|304314368|ref|YP_003849515.1| - 0.28 10.7 1.3 7 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|304314368|ref|YP_003849515.1| - 0.35 10.6 3.9 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2 PF00096.21 gi|304314368|ref|YP_003849515.1| - 0.39 11.1 2.6 11 6.5 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|304314368|ref|YP_003849515.1| - 0.58 9.4 4.7 15 4.9 3.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|304314368|ref|YP_003849515.1| - 0.7 9.7 2.6 14 5.5 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|304314368|ref|YP_003849515.1| - 0.73 10.0 3.9 4.6 7.4 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Desulfoferrod_N PF06397.7 gi|304314368|ref|YP_003849515.1| - 2.1 7.8 4.7 1.9 7.9 0.7 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_CPCC PF14206.1 gi|304314368|ref|YP_003849515.1| - 2.3 7.8 4.6 13 5.3 0.3 2.0 1 1 1 2 2 2 0 Cysteine-rich CPCC Lactamase_B PF00753.22 gi|304314369|ref|YP_003849516.1| - 6.9e-23 81.3 0.0 1.1e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|304314369|ref|YP_003849516.1| - 0.027 14.4 0.0 0.05 13.5 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin Ferritin PF00210.19 gi|304314370|ref|YP_003849517.1| - 3.2e-42 143.6 1.3 3.7e-42 143.4 0.9 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|304314370|ref|YP_003849517.1| - 0.0045 17.3 1.7 0.029 14.7 1.3 1.9 1 1 1 2 2 2 1 Rubrerythrin Acid_phosphat_B PF03767.9 gi|304314370|ref|YP_003849517.1| - 0.008 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) GFRP PF06399.8 gi|304314370|ref|YP_003849517.1| - 0.096 12.2 0.0 0.42 10.2 0.0 2.0 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) AhpC-TSA PF00578.16 gi|304314371|ref|YP_003849518.1| - 2.7e-31 107.8 0.0 5.1e-31 106.9 0.0 1.4 2 0 0 2 2 2 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|304314371|ref|YP_003849518.1| - 2.3e-11 43.1 0.1 3.8e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|304314371|ref|YP_003849518.1| - 1.2e-10 41.0 0.0 1.6e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Redoxin Sod_Fe_C PF02777.13 gi|304314372|ref|YP_003849519.1| - 4.7e-44 148.5 0.2 7.1e-44 147.9 0.2 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|304314372|ref|YP_003849519.1| - 2.1e-31 108.0 0.1 3.6e-31 107.2 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain AMP-binding_C_2 PF14535.1 gi|304314373|ref|YP_003849520.1| - 4.7e-33 113.1 0.4 1.2e-32 111.8 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|304314373|ref|YP_003849520.1| - 3e-20 72.0 1.3 1.2e-19 70.0 0.9 1.8 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|304314373|ref|YP_003849520.1| - 0.0015 17.2 0.0 0.0028 16.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE ACT PF01842.20 gi|304314374|ref|YP_003849521.1| - 2.5e-16 58.7 0.0 2.1e-08 33.4 0.0 2.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|304314374|ref|YP_003849521.1| - 0.0023 18.2 0.0 1.3 9.4 0.0 2.2 2 0 0 2 2 2 2 ACT domain MarR_2 PF12802.2 gi|304314375|ref|YP_003849522.1| - 3.4e-11 42.6 0.0 1.1e-10 41.0 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|304314375|ref|YP_003849522.1| - 7.2e-09 34.9 0.1 8.8e-08 31.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|304314375|ref|YP_003849522.1| - 5.7e-06 26.5 0.0 2.1e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|304314375|ref|YP_003849522.1| - 1.2e-05 24.9 0.0 5e-05 23.0 0.0 2.0 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|304314375|ref|YP_003849522.1| - 0.00011 21.8 0.2 0.0013 18.3 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.7 gi|304314375|ref|YP_003849522.1| - 0.00073 19.1 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|304314375|ref|YP_003849522.1| - 0.0015 17.8 0.0 0.0033 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|304314375|ref|YP_003849522.1| - 0.0075 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|304314375|ref|YP_003849522.1| - 0.0099 15.6 0.0 0.053 13.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|304314375|ref|YP_003849522.1| - 0.029 14.0 0.0 0.068 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|304314375|ref|YP_003849522.1| - 0.032 14.1 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|304314375|ref|YP_003849522.1| - 0.037 14.0 0.1 0.15 12.0 0.0 2.1 2 1 0 2 2 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|304314375|ref|YP_003849522.1| - 0.082 13.0 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|304314375|ref|YP_003849522.1| - 0.086 12.7 0.1 0.37 10.7 0.0 2.0 2 1 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.1 gi|304314375|ref|YP_003849522.1| - 0.096 12.7 0.3 0.37 10.8 0.1 2.2 2 1 0 2 2 2 0 Mrr N-terminal domain DHHA1 PF02272.14 gi|304314376|ref|YP_003849523.1| - 4.7e-14 51.8 0.1 1e-13 50.7 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|304314376|ref|YP_003849523.1| - 2.2e-13 50.0 0.0 4.3e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 DHH family SRP19 PF01922.12 gi|304314377|ref|YP_003849524.1| - 2.1e-28 98.7 0.1 2.3e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein HEM4 PF02602.10 gi|304314378|ref|YP_003849525.1| - 4.8e-54 183.0 0.2 5.5e-54 182.8 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|304314379|ref|YP_003849526.1| - 3.1e-53 180.6 0.7 3.5e-53 180.4 0.5 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GATase_5 PF13507.1 gi|304314380|ref|YP_003849527.1| - 1.2e-43 148.9 0.0 1.6e-43 148.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|304314380|ref|YP_003849527.1| - 2.8e-10 39.9 0.0 4.5e-10 39.3 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|304314380|ref|YP_003849527.1| - 1.1e-07 31.4 0.0 1.3e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|304314380|ref|YP_003849527.1| - 3.2e-07 30.0 0.0 5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|304314380|ref|YP_003849527.1| - 7.8e-06 25.2 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|304314380|ref|YP_003849527.1| - 1.9e-05 24.3 0.0 2.5e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|304314380|ref|YP_003849527.1| - 0.0097 15.3 0.1 0.014 14.8 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|304314381|ref|YP_003849528.1| - 1.1e-25 89.3 0.0 1.3e-25 89.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF3006 PF11213.3 gi|304314381|ref|YP_003849528.1| - 0.11 12.3 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) SAICAR_synt PF01259.13 gi|304314382|ref|YP_003849529.1| - 2.4e-54 184.0 0.0 3e-54 183.7 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase TM1506 PF08973.5 gi|304314382|ref|YP_003849529.1| - 0.13 11.8 0.0 1 8.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1893) P22_Tail-4 PF11650.3 gi|304314382|ref|YP_003849529.1| - 0.15 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 P22 tail accessory factor SIS PF01380.17 gi|304314383|ref|YP_003849530.1| - 6.1e-53 177.9 0.0 8.4e-29 99.8 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|304314383|ref|YP_003849530.1| - 2.7e-26 92.0 0.0 5e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|304314383|ref|YP_003849530.1| - 2.7e-21 75.7 0.0 3.4e-17 62.1 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|304314383|ref|YP_003849530.1| - 8.1e-21 74.0 0.0 1.3e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|304314383|ref|YP_003849530.1| - 9.7e-05 21.1 0.0 0.00017 20.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SBF PF01758.11 gi|304314384|ref|YP_003849531.1| - 6.8e-16 58.2 12.4 6.8e-16 58.2 8.6 2.2 2 1 0 2 2 2 1 Sodium Bile acid symporter family Glyco_trans_1_4 PF13692.1 gi|304314385|ref|YP_003849532.1| - 7.7e-15 55.2 0.0 1.4e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|304314385|ref|YP_003849532.1| - 0.0011 18.4 0.0 0.0023 17.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314385|ref|YP_003849532.1| - 0.11 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|304314385|ref|YP_003849532.1| - 0.14 11.8 0.3 0.47 10.1 0.2 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|304314386|ref|YP_003849533.1| - 1.5e-27 96.3 0.1 3.9e-26 91.7 0.1 2.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304314386|ref|YP_003849533.1| - 1e-08 35.3 0.0 3e-08 33.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|304314386|ref|YP_003849533.1| - 0.0077 16.5 0.0 0.028 14.7 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|304314386|ref|YP_003849533.1| - 0.083 12.5 0.0 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family group 2 DUF1727 PF08353.5 gi|304314386|ref|YP_003849533.1| - 0.11 12.0 0.6 2.6 7.6 0.0 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF1727) Glycos_transf_1 PF00534.15 gi|304314387|ref|YP_003849534.1| - 1.9e-46 157.5 0.0 3e-46 156.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|304314387|ref|YP_003849534.1| - 2.5e-25 89.4 0.2 4.3e-25 88.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|304314387|ref|YP_003849534.1| - 8.5e-23 80.9 0.0 1.7e-22 79.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|304314387|ref|YP_003849534.1| - 3.4e-18 66.0 0.0 8.6e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314387|ref|YP_003849534.1| - 8.4e-13 48.4 0.0 1.9e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|304314387|ref|YP_003849534.1| - 1.2e-11 44.5 0.0 2.2e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like HisKA_2 PF07568.7 gi|304314388|ref|YP_003849535.1| - 5.2e-25 87.1 2.0 1.6e-24 85.5 1.4 1.9 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|304314388|ref|YP_003849535.1| - 3.9e-24 85.0 0.0 4.7e-10 39.7 0.0 5.0 4 2 0 4 4 4 2 PAS domain PAS PF00989.19 gi|304314388|ref|YP_003849535.1| - 2.5e-22 78.7 0.0 4.6e-09 36.0 0.0 3.6 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|304314388|ref|YP_003849535.1| - 4.3e-21 75.0 0.0 5.9e-07 29.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|304314388|ref|YP_003849535.1| - 2.2e-17 62.9 0.8 1.1e-14 54.2 0.1 3.1 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|304314388|ref|YP_003849535.1| - 1.3e-15 56.6 0.2 9.8e-05 22.0 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|304314388|ref|YP_003849535.1| - 7.7e-14 51.3 0.0 1.5e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|304314388|ref|YP_003849535.1| - 1e-07 31.7 0.0 2e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|304314388|ref|YP_003849535.1| - 1.3e-07 31.9 0.2 3e-07 30.7 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.2 gi|304314388|ref|YP_003849535.1| - 0.001 19.0 0.0 1.7 8.7 0.0 3.5 3 0 0 3 3 3 1 PAS fold FixQ PF05545.6 gi|304314388|ref|YP_003849535.1| - 0.039 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ HATPase_c_3 PF13589.1 gi|304314388|ref|YP_003849535.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|304314388|ref|YP_003849535.1| - 0.12 12.7 0.0 11 6.3 0.0 2.6 2 0 0 2 2 2 0 PAS domain COPI_assoc PF08507.5 gi|304314388|ref|YP_003849535.1| - 0.35 10.5 4.1 1.4 8.5 0.0 2.8 3 0 0 3 3 3 0 COPI associated protein Methyltransf_30 PF05430.6 gi|304314389|ref|YP_003849536.1| - 1.2e-33 115.4 0.0 2.8e-33 114.2 0.0 1.7 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|304314389|ref|YP_003849536.1| - 1.6e-09 37.8 0.0 2.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304314389|ref|YP_003849536.1| - 1.3e-08 35.4 0.0 2.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|304314389|ref|YP_003849536.1| - 4.8e-05 22.4 0.0 7.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_25 PF13649.1 gi|304314389|ref|YP_003849536.1| - 6.9e-05 23.1 0.0 0.00014 22.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304314389|ref|YP_003849536.1| - 0.00028 21.3 0.0 0.0022 18.4 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314389|ref|YP_003849536.1| - 0.00043 19.8 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_24 PF13578.1 gi|304314389|ref|YP_003849536.1| - 0.0012 19.6 0.0 0.0031 18.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|304314389|ref|YP_003849536.1| - 0.045 13.4 0.0 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314389|ref|YP_003849536.1| - 0.1 13.1 0.0 0.48 10.9 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|304314389|ref|YP_003849536.1| - 0.16 11.4 0.0 0.56 9.7 0.0 1.8 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TGT PF01702.13 gi|304314390|ref|YP_003849537.1| - 3.3e-51 173.8 0.0 4.7e-51 173.3 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|304314390|ref|YP_003849537.1| - 3.5e-33 113.2 0.1 2.3e-32 110.6 0.0 2.3 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|304314390|ref|YP_003849537.1| - 1.9e-17 62.7 0.1 4e-17 61.7 0.1 1.6 1 0 0 1 1 1 1 PUA domain NAC PF01849.13 gi|304314391|ref|YP_003849538.1| - 9.9e-21 73.0 4.5 3.8e-20 71.1 2.4 2.0 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|304314391|ref|YP_003849538.1| - 1.7e-08 34.0 0.1 1.7e-08 34.0 0.0 2.2 2 1 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|304314391|ref|YP_003849538.1| - 0.0013 18.1 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain SPT6_acidic PF14632.1 gi|304314391|ref|YP_003849538.1| - 0.076 13.1 0.2 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 Acidic N-terminal SPT6 DUF1335 PF07056.6 gi|304314391|ref|YP_003849538.1| - 0.11 12.2 0.4 0.2 11.3 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1335) Metallophos PF00149.23 gi|304314392|ref|YP_003849539.1| - 2.7e-19 69.3 1.1 3.9e-19 68.8 0.8 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|304314392|ref|YP_003849539.1| - 1.3e-18 67.2 0.2 2e-18 66.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.5 gi|304314392|ref|YP_003849539.1| - 0.0091 15.3 0.4 0.013 14.8 0.3 1.4 1 1 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap MutL PF13941.1 gi|304314392|ref|YP_003849539.1| - 0.011 14.0 0.0 0.015 13.6 0.0 1.1 1 0 0 1 1 1 0 MutL protein RNase_Zc3h12a PF11977.3 gi|304314393|ref|YP_003849540.1| - 4.5e-27 94.7 0.1 7e-27 94.1 0.1 1.3 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain Peptidase_C3 PF00548.15 gi|304314393|ref|YP_003849540.1| - 0.094 12.5 0.3 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 3C cysteine protease (picornain 3C) ArgJ PF01960.13 gi|304314396|ref|YP_003849543.1| - 1.9e-140 467.6 5.4 2.3e-140 467.4 3.7 1.0 1 0 0 1 1 1 1 ArgJ family Bcl-2 PF00452.14 gi|304314396|ref|YP_003849543.1| - 0.13 12.3 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family AA_kinase PF00696.23 gi|304314397|ref|YP_003849544.1| - 7e-42 143.6 1.8 8.2e-42 143.4 1.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family Iso_dh PF00180.15 gi|304314398|ref|YP_003849545.1| - 1.2e-105 353.2 0.0 1.5e-105 353.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.8 gi|304314398|ref|YP_003849545.1| - 0.0013 18.7 0.1 0.0077 16.1 0.0 2.0 2 0 0 2 2 2 1 Antirestriction protein TPR_12 PF13424.1 gi|304314399|ref|YP_003849546.1| - 1.7e-16 59.8 0.8 6e-05 22.8 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304314399|ref|YP_003849546.1| - 8.8e-10 37.6 1.3 0.044 13.5 0.0 4.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304314399|ref|YP_003849546.1| - 1.7e-09 36.8 7.5 0.0019 17.9 0.0 4.8 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|304314399|ref|YP_003849546.1| - 1.7e-08 33.7 4.9 0.0027 17.2 0.0 4.3 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|304314399|ref|YP_003849546.1| - 7.7e-08 31.8 0.9 0.039 13.6 0.1 3.9 4 2 0 4 4 4 2 TPR repeat TPR_10 PF13374.1 gi|304314399|ref|YP_003849546.1| - 5.7e-06 26.0 0.1 0.013 15.4 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304314399|ref|YP_003849546.1| - 6.2e-06 26.3 0.2 0.18 12.4 0.0 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304314399|ref|YP_003849546.1| - 1.3e-05 25.6 0.1 0.0016 19.0 0.0 3.3 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304314399|ref|YP_003849546.1| - 1.8e-05 24.1 3.9 0.039 13.7 0.0 4.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304314399|ref|YP_003849546.1| - 0.00011 22.5 0.2 0.2 11.9 0.0 3.6 3 1 0 4 4 4 1 Tetratricopeptide repeat SNAP PF14938.1 gi|304314399|ref|YP_003849546.1| - 0.022 13.9 0.2 0.063 12.4 0.0 1.8 2 1 0 2 2 2 0 Soluble NSF attachment protein, SNAP TPR_6 PF13174.1 gi|304314399|ref|YP_003849546.1| - 0.068 13.6 0.1 8 7.1 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|304314399|ref|YP_003849546.1| - 0.069 13.2 0.2 0.61 10.2 0.1 2.6 2 2 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 GrpE PF01025.14 gi|304314399|ref|YP_003849546.1| - 0.071 12.6 0.2 0.19 11.2 0.0 1.8 1 1 0 1 1 1 0 GrpE TPR_21 PF09976.4 gi|304314399|ref|YP_003849546.1| - 0.13 12.2 0.0 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat HEAT_2 PF13646.1 gi|304314400|ref|YP_003849547.1| - 2.9e-38 130.0 3.8 1.1e-19 70.5 1.1 2.3 1 1 0 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|304314400|ref|YP_003849547.1| - 7.2e-29 97.3 9.7 2.5e-08 33.6 0.2 5.5 5 1 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|304314400|ref|YP_003849547.1| - 6e-19 67.9 8.2 6.2e-05 23.3 0.4 5.2 3 2 1 4 4 4 4 HEAT-like repeat HEAT PF02985.17 gi|304314400|ref|YP_003849547.1| - 3.1e-18 64.1 0.2 0.0026 17.7 0.0 5.1 4 1 1 5 5 5 4 HEAT repeat Arm PF00514.18 gi|304314400|ref|YP_003849547.1| - 2.7e-09 36.5 0.2 0.22 11.3 0.0 4.9 2 1 3 5 5 5 2 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.3 gi|304314400|ref|YP_003849547.1| - 1.7e-06 27.9 0.0 0.2 11.4 0.0 4.1 1 1 3 4 4 4 1 Aconitate B N-terminal domain Cnd1 PF12717.2 gi|304314400|ref|YP_003849547.1| - 0.00075 19.3 0.0 4.9 6.9 0.0 3.8 1 1 4 5 5 5 2 non-SMC mitotic condensation complex subunit 1 TPR_20 PF14561.1 gi|304314400|ref|YP_003849547.1| - 0.0035 17.4 3.0 14 5.8 0.0 4.5 1 1 4 5 5 5 0 Tetratricopeptide repeat Adaptin_N PF01602.15 gi|304314400|ref|YP_003849547.1| - 0.005 15.2 0.0 0.13 10.5 0.0 2.6 1 1 1 2 2 2 1 Adaptin N terminal region ALF PF03752.8 gi|304314400|ref|YP_003849547.1| - 0.015 15.1 3.6 2.7 7.9 0.0 3.4 3 0 0 3 3 3 0 Short repeats of unknown function Proteasom_PSMB PF10508.4 gi|304314400|ref|YP_003849547.1| - 0.14 10.3 0.2 0.3 9.3 0.1 1.5 2 0 0 2 2 2 0 Proteasome non-ATPase 26S subunit MgtE_N PF03448.12 gi|304314400|ref|YP_003849547.1| - 0.51 10.6 7.6 6 7.2 1.4 3.2 2 2 0 2 2 2 0 MgtE intracellular N domain Ldh_1_N PF00056.18 gi|304314401|ref|YP_003849548.1| - 2.1e-34 118.3 0.2 3.2e-34 117.7 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|304314401|ref|YP_003849548.1| - 1.1e-28 100.1 0.0 1.5e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.19 gi|304314401|ref|YP_003849548.1| - 3.3e-06 27.3 0.1 8.5e-06 26.0 0.1 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|304314401|ref|YP_003849548.1| - 0.00061 19.7 0.3 0.0011 18.8 0.2 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.20 gi|304314401|ref|YP_003849548.1| - 0.00098 19.0 0.9 0.0023 17.8 0.6 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|304314401|ref|YP_003849548.1| - 0.0015 18.2 0.3 0.0026 17.4 0.2 1.5 1 0 0 1 1 1 1 KR domain Glyco_hydro_4C PF11975.3 gi|304314401|ref|YP_003849548.1| - 0.0022 17.8 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.11 gi|304314401|ref|YP_003849548.1| - 0.012 14.8 0.0 0.044 13.1 0.0 1.9 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase PK_C PF02887.11 gi|304314401|ref|YP_003849548.1| - 0.024 14.1 0.3 0.38 10.2 0.0 2.5 3 0 0 3 3 3 0 Pyruvate kinase, alpha/beta domain Saccharop_dh PF03435.13 gi|304314401|ref|YP_003849548.1| - 0.055 12.4 0.3 0.073 12.0 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Gal_mutarotas_2 PF13802.1 gi|304314401|ref|YP_003849548.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Galactose mutarotase-like SNO PF01174.14 gi|304314402|ref|YP_003849549.1| - 6.2e-49 166.1 0.2 7.2e-49 165.9 0.2 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|304314402|ref|YP_003849549.1| - 4.8e-07 29.4 0.0 7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|304314402|ref|YP_003849549.1| - 4.4e-05 23.1 0.3 0.00012 21.7 0.2 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|304314402|ref|YP_003849549.1| - 0.001 18.8 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 UPF0180 PF03698.8 gi|304314402|ref|YP_003849549.1| - 0.005 16.6 0.6 0.012 15.4 0.3 1.8 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0180) DUF4066 PF13278.1 gi|304314402|ref|YP_003849549.1| - 0.0069 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase_2 PF00310.16 gi|304314403|ref|YP_003849550.1| - 4.7e-22 78.1 0.2 7.7e-15 54.4 0.0 3.0 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|304314403|ref|YP_003849550.1| - 3e-19 69.2 0.0 4.6e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|304314403|ref|YP_003849550.1| - 2.8e-18 65.8 0.0 4.4e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|304314403|ref|YP_003849550.1| - 8.2e-05 21.4 0.0 0.00013 20.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF493 PF04359.9 gi|304314403|ref|YP_003849550.1| - 0.064 13.6 0.1 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF493) GXGXG PF01493.14 gi|304314404|ref|YP_003849551.1| - 2.9e-44 150.5 12.2 3.3e-44 150.3 8.5 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|304314405|ref|YP_003849552.1| - 2.1e-45 154.0 0.0 3.8e-45 153.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|304314405|ref|YP_003849552.1| - 1.2e-28 98.7 0.0 2.3e-28 97.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|304314405|ref|YP_003849552.1| - 7.3e-07 29.1 1.8 0.00059 19.8 0.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314405|ref|YP_003849552.1| - 0.00034 20.0 5.2 0.00034 20.0 3.6 3.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314405|ref|YP_003849552.1| - 0.0011 19.2 7.6 0.0039 17.4 0.2 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314405|ref|YP_003849552.1| - 0.0011 18.6 3.1 0.0011 18.6 2.1 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314405|ref|YP_003849552.1| - 0.0014 18.4 11.9 0.0014 18.4 8.3 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314405|ref|YP_003849552.1| - 0.0018 18.1 4.1 0.0018 18.1 2.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314405|ref|YP_003849552.1| - 0.0028 17.8 12.5 0.0028 17.8 8.6 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314405|ref|YP_003849552.1| - 0.0079 16.5 3.2 0.0079 16.5 2.2 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314405|ref|YP_003849552.1| - 0.01 16.1 17.7 0.024 14.9 9.4 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314405|ref|YP_003849552.1| - 0.02 14.7 8.5 0.02 14.7 5.9 2.1 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314405|ref|YP_003849552.1| - 0.13 12.6 6.4 5.3 7.5 0.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|304314405|ref|YP_003849552.1| - 1.5 9.3 23.6 0.085 13.2 2.4 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314405|ref|YP_003849552.1| - 1.6 9.5 15.3 2.1 9.1 2.4 3.2 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|304314405|ref|YP_003849552.1| - 8.4 7.0 11.7 1.5 9.4 2.0 2.8 2 1 1 3 3 2 0 4Fe-4S single cluster domain Glu_synthase PF01645.12 gi|304314406|ref|YP_003849553.1| - 1.5e-133 445.2 5.4 5.1e-133 443.5 3.7 1.8 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|304314406|ref|YP_003849553.1| - 4.4e-15 55.3 15.1 2.8e-14 52.7 4.0 3.0 2 1 1 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|304314406|ref|YP_003849553.1| - 4.5e-14 52.3 4.1 9.5e-14 51.2 2.8 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|304314406|ref|YP_003849553.1| - 5.8e-09 35.2 12.3 8e-08 31.5 4.3 3.4 4 0 0 4 4 4 1 IMP dehydrogenase / GMP reductase domain Fer4_21 PF14697.1 gi|304314406|ref|YP_003849553.1| - 9e-09 35.0 10.0 9e-09 35.0 7.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314406|ref|YP_003849553.1| - 1.7e-07 30.5 11.9 1.7e-06 27.3 2.2 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314406|ref|YP_003849553.1| - 2.4e-06 27.7 12.2 2.4e-06 27.7 8.5 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314406|ref|YP_003849553.1| - 3.2e-06 27.4 24.9 0.00034 20.9 2.1 3.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314406|ref|YP_003849553.1| - 6.5e-05 22.6 19.8 0.00028 20.6 9.2 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314406|ref|YP_003849553.1| - 0.00011 22.9 12.3 0.0015 19.1 0.6 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain His_biosynth PF00977.16 gi|304314406|ref|YP_003849553.1| - 0.0011 18.2 0.7 0.0023 17.2 0.2 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|304314406|ref|YP_003849553.1| - 0.0017 17.4 0.7 0.0017 17.4 0.5 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase QRPTase_C PF01729.14 gi|304314406|ref|YP_003849553.1| - 0.0085 15.6 0.2 0.018 14.5 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Fer4_6 PF12837.2 gi|304314406|ref|YP_003849553.1| - 0.0096 15.7 3.4 0.0096 15.7 2.3 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Glu_syn_central PF04898.9 gi|304314406|ref|YP_003849553.1| - 0.015 14.6 1.3 0.47 9.6 0.1 2.3 2 0 0 2 2 2 0 Glutamate synthase central domain Fer4_2 PF12797.2 gi|304314406|ref|YP_003849553.1| - 0.02 14.8 3.1 0.02 14.8 2.1 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314406|ref|YP_003849553.1| - 0.033 14.5 1.0 0.033 14.5 0.7 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain IGPS PF00218.16 gi|304314406|ref|YP_003849553.1| - 0.039 13.0 0.1 0.089 11.8 0.1 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|304314406|ref|YP_003849553.1| - 0.1 11.8 6.0 0.061 12.5 0.8 2.5 1 1 1 2 2 2 0 PcrB family Fer4_8 PF13183.1 gi|304314406|ref|YP_003849553.1| - 0.13 12.3 25.4 0.057 13.4 1.9 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314406|ref|YP_003849553.1| - 1.2 9.6 24.8 0.094 13.0 1.5 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain DeoC PF01791.4 gi|304314406|ref|YP_003849553.1| - 2.5 7.3 8.7 0.12 11.6 1.3 2.2 3 0 0 3 3 3 0 DeoC/LacD family aldolase MFS_1 PF07690.11 gi|304314407|ref|YP_003849554.1| - 1.7e-46 158.5 63.2 1.6e-35 122.5 27.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|304314407|ref|YP_003849554.1| - 2.2e-06 26.3 44.2 2.6e-05 22.8 9.3 3.6 3 2 0 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|304314407|ref|YP_003849554.1| - 1.1e-05 23.7 7.5 1.1e-05 23.7 5.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector Bac_export_2 PF01312.14 gi|304314407|ref|YP_003849554.1| - 3.4 6.4 12.7 0.26 10.1 3.3 2.3 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family MFS_1 PF07690.11 gi|304314408|ref|YP_003849555.1| - 1.3e-48 165.4 42.3 1.3e-48 165.4 29.3 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|304314408|ref|YP_003849555.1| - 3.6e-08 32.4 15.1 3.6e-08 32.4 10.5 3.2 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|304314408|ref|YP_003849555.1| - 1.7e-06 26.7 35.7 0.0015 16.9 13.9 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|304314408|ref|YP_003849555.1| - 5.1 5.0 21.7 0.034 12.2 5.7 2.5 2 1 1 3 3 3 0 Transmembrane secretion effector zf-CDGSH PF09360.5 gi|304314409|ref|YP_003849556.1| - 1.1e-34 117.9 2.9 1.1e-16 60.3 0.1 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|304314409|ref|YP_003849556.1| - 1e-09 38.0 0.0 3.9e-09 36.1 0.0 2.0 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Gly-zipper_Omp PF13488.1 gi|304314410|ref|YP_003849557.1| - 0.047 13.3 0.1 0.096 12.3 0.1 1.5 1 0 0 1 1 1 0 Glycine zipper DUF4199 PF13858.1 gi|304314410|ref|YP_003849557.1| - 0.095 12.6 0.2 0.15 11.9 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) CbiM PF01891.11 gi|304314411|ref|YP_003849558.1| - 1.8e-39 135.4 23.8 2e-39 135.3 16.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|304314411|ref|YP_003849558.1| - 0.00013 21.8 28.0 0.00013 21.8 19.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3816) DUF1510 PF07423.6 gi|304314412|ref|YP_003849559.1| - 0.02 14.2 1.2 0.023 14.0 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Presenilin PF01080.12 gi|304314412|ref|YP_003849559.1| - 0.075 11.8 1.5 0.091 11.5 1.1 1.1 1 0 0 1 1 1 0 Presenilin SSP160 PF06933.6 gi|304314412|ref|YP_003849559.1| - 0.18 9.7 9.7 0.2 9.6 6.7 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 NAM-associated PF14303.1 gi|304314412|ref|YP_003849559.1| - 0.91 9.8 4.0 1.3 9.3 2.8 1.1 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain Corona_nucleoca PF00937.13 gi|304314412|ref|YP_003849559.1| - 1.1 8.1 7.5 1.3 7.8 5.2 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein DUF4614 PF15391.1 gi|304314412|ref|YP_003849559.1| - 8.2 6.1 11.5 11 5.7 8.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) DNA_pol_viral_N PF00242.12 gi|304314412|ref|YP_003849559.1| - 9.5 5.1 8.6 10 4.9 5.9 1.0 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain DEAD PF00270.24 gi|304314413|ref|YP_003849560.1| - 1.7e-45 154.5 0.0 1.7e-44 151.2 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|304314413|ref|YP_003849560.1| - 3.6e-28 97.2 0.1 8.1e-28 96.1 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1253 PF06862.7 gi|304314413|ref|YP_003849560.1| - 0.002 16.5 1.1 0.11 10.8 0.0 2.6 2 1 1 3 3 3 2 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|304314413|ref|YP_003849560.1| - 0.0029 17.4 0.0 0.014 15.2 0.0 2.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit 5-FTHF_cyc-lig PF01812.15 gi|304314414|ref|YP_003849561.1| - 1.2e-34 119.7 0.0 1.3e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family RDD PF06271.7 gi|304314415|ref|YP_003849562.1| - 2.6e-15 56.5 6.0 3.3e-15 56.1 4.1 1.1 1 0 0 1 1 1 1 RDD family DUF2427 PF10348.4 gi|304314415|ref|YP_003849562.1| - 0.094 12.2 3.0 0.21 11.1 1.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) AIRS_C PF02769.17 gi|304314416|ref|YP_003849563.1| - 7.9e-29 100.6 0.7 1.2e-28 100.0 0.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|304314416|ref|YP_003849563.1| - 3.7e-16 59.1 0.8 9.3e-16 57.8 0.1 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Ribosomal_S8e PF01201.17 gi|304314417|ref|YP_003849564.1| - 2.5e-39 134.4 4.6 2.8e-39 134.2 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DNA_pol_B PF00136.16 gi|304314418|ref|YP_003849565.1| - 4.1e-33 114.8 0.0 5e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase family B HAD_2 PF13419.1 gi|304314419|ref|YP_003849566.1| - 4.9e-28 98.5 0.0 6.7e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|304314419|ref|YP_003849566.1| - 7.1e-14 51.2 0.0 1.2e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|304314419|ref|YP_003849566.1| - 2.4e-11 44.4 0.0 1.2e-10 42.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304314419|ref|YP_003849566.1| - 2e-06 28.0 0.0 2.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|304314419|ref|YP_003849566.1| - 0.006 16.4 0.0 0.2 11.5 0.0 2.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|304314419|ref|YP_003849566.1| - 0.0076 16.4 0.0 0.024 14.7 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Acid_phosphat_B PF03767.9 gi|304314419|ref|YP_003849566.1| - 0.036 13.4 0.0 0.072 12.4 0.0 1.5 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Mg_chelatase PF01078.16 gi|304314420|ref|YP_003849567.1| - 1.4e-05 24.3 0.0 0.00044 19.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|304314420|ref|YP_003849567.1| - 0.0014 17.6 1.2 0.45 9.4 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|304314420|ref|YP_003849567.1| - 0.0024 18.6 0.1 0.065 14.0 0.0 3.1 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|304314420|ref|YP_003849567.1| - 0.003 17.2 0.0 0.0086 15.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|304314420|ref|YP_003849567.1| - 0.0037 17.4 0.0 0.035 14.3 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|304314420|ref|YP_003849567.1| - 0.015 15.0 0.0 0.97 9.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|304314420|ref|YP_003849567.1| - 0.067 13.3 0.0 0.2 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain Exo_endo_phos PF03372.18 gi|304314422|ref|YP_003849569.1| - 8.3e-30 104.5 0.3 9.6e-30 104.3 0.2 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|304314422|ref|YP_003849569.1| - 9e-16 57.5 0.0 1.3e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase LisH PF08513.6 gi|304314422|ref|YP_003849569.1| - 0.033 13.9 0.0 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 LisH FeoB_N PF02421.13 gi|304314423|ref|YP_003849570.1| - 3.7e-64 214.7 0.4 5.4e-64 214.1 0.3 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|304314423|ref|YP_003849570.1| - 2.5e-25 88.4 20.0 1.6e-12 47.2 2.9 3.0 2 1 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|304314423|ref|YP_003849570.1| - 1.8e-16 60.1 0.0 3.2e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|304314423|ref|YP_003849570.1| - 2.4e-12 46.0 0.5 2.4e-12 46.0 0.4 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus GTP_EFTU PF00009.22 gi|304314423|ref|YP_003849570.1| - 9.3e-05 21.9 0.3 0.00069 19.0 0.2 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|304314423|ref|YP_003849570.1| - 0.0003 20.4 0.0 0.00066 19.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|304314423|ref|YP_003849570.1| - 0.00068 18.9 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|304314423|ref|YP_003849570.1| - 0.00068 18.8 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|304314423|ref|YP_003849570.1| - 0.042 13.0 0.0 0.082 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|304314423|ref|YP_003849570.1| - 0.052 14.0 0.0 0.089 13.2 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|304314423|ref|YP_003849570.1| - 0.16 11.7 0.3 3.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Dynamin family Fe_dep_repr_C PF02742.10 gi|304314424|ref|YP_003849571.1| - 5.4e-29 99.6 0.6 1.2e-28 98.6 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|304314424|ref|YP_003849571.1| - 8.5e-27 92.8 1.0 1.6e-26 91.9 0.7 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|304314424|ref|YP_003849571.1| - 2.2e-19 69.1 0.1 1.2e-18 66.8 0.2 2.1 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|304314424|ref|YP_003849571.1| - 9.6e-06 25.1 0.0 3.6e-05 23.3 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|304314424|ref|YP_003849571.1| - 4e-05 23.3 0.2 6.8e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|304314424|ref|YP_003849571.1| - 6.9e-05 22.4 0.1 0.00022 20.8 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|304314424|ref|YP_003849571.1| - 0.00014 21.5 0.7 0.0072 16.0 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|304314424|ref|YP_003849571.1| - 0.00019 20.7 0.5 0.0014 17.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|304314424|ref|YP_003849571.1| - 0.0021 18.1 0.1 0.0045 17.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|304314424|ref|YP_003849571.1| - 0.0024 17.3 0.0 0.0067 15.9 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|304314424|ref|YP_003849571.1| - 0.0028 17.3 0.2 0.0089 15.7 0.0 2.0 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.1 gi|304314424|ref|YP_003849571.1| - 0.0034 17.1 0.0 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|304314424|ref|YP_003849571.1| - 0.0057 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.7 gi|304314424|ref|YP_003849571.1| - 0.0071 15.9 0.1 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|304314424|ref|YP_003849571.1| - 0.0088 15.6 2.1 0.019 14.6 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_6 PF01418.12 gi|304314424|ref|YP_003849571.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family FeoC PF09012.5 gi|304314424|ref|YP_003849571.1| - 0.015 14.9 0.0 0.036 13.7 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|304314424|ref|YP_003849571.1| - 0.019 15.2 0.0 0.27 11.5 0.0 2.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|304314424|ref|YP_003849571.1| - 0.035 14.2 0.3 0.072 13.2 0.0 1.6 2 0 0 2 2 1 0 FaeA-like protein HTH_23 PF13384.1 gi|304314424|ref|YP_003849571.1| - 0.064 12.9 0.1 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|304314424|ref|YP_003849571.1| - 0.076 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|304314424|ref|YP_003849571.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Put_DNA-bind_N PF06971.8 gi|304314424|ref|YP_003849571.1| - 1.8 8.3 3.9 4.6 7.0 0.1 3.1 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus Grp1_Fun34_YaaH PF01184.14 gi|304314425|ref|YP_003849572.1| - 1.4e-56 191.0 16.5 1.7e-56 190.8 11.4 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.23 gi|304314426|ref|YP_003849573.1| - 3.2e-99 332.1 0.0 3.8e-99 331.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|304314426|ref|YP_003849573.1| - 2.3e-22 79.7 1.5 4.2e-21 75.6 0.4 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain IMS PF00817.15 gi|304314426|ref|YP_003849573.1| - 0.083 12.6 0.0 0.35 10.6 0.0 2.1 3 1 0 3 3 3 0 impB/mucB/samB family Hydrolase PF00702.21 gi|304314426|ref|YP_003849573.1| - 0.14 12.5 0.1 2.7 8.3 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF1897 PF09005.5 gi|304314426|ref|YP_003849573.1| - 0.37 10.2 2.0 1.1 8.7 1.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1897) Nsp1_C PF05064.8 gi|304314427|ref|YP_003849574.1| - 0.012 15.1 1.2 0.018 14.7 0.8 1.2 1 0 0 1 1 1 0 Nsp1-like C-terminal region Cpn60_TCP1 PF00118.19 gi|304314428|ref|YP_003849575.1| - 5e-173 576.1 13.9 5.6e-173 576.0 9.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Lactamase_B PF00753.22 gi|304314430|ref|YP_003849577.1| - 5.2e-22 78.4 0.0 8.5e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|304314430|ref|YP_003849577.1| - 2.1e-12 47.2 0.0 3.5e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|304314430|ref|YP_003849577.1| - 0.00036 20.1 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Fer4 PF00037.22 gi|304314431|ref|YP_003849578.1| - 3.7e-06 26.2 16.6 1.8e-05 24.1 0.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Dehalogenase PF13486.1 gi|304314431|ref|YP_003849578.1| - 7.9e-05 22.2 0.0 0.00014 21.4 0.0 1.3 1 1 0 1 1 1 1 Reductive dehalogenase subunit Fer4_18 PF13746.1 gi|304314431|ref|YP_003849578.1| - 0.00066 20.0 10.1 0.012 16.0 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314431|ref|YP_003849578.1| - 0.013 15.4 1.6 0.013 15.4 1.1 4.1 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314431|ref|YP_003849578.1| - 0.015 15.6 18.2 0.015 15.6 12.6 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314431|ref|YP_003849578.1| - 0.016 15.4 2.7 0.016 15.4 1.9 3.4 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314431|ref|YP_003849578.1| - 0.022 14.6 3.5 0.022 14.6 2.4 3.6 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304314431|ref|YP_003849578.1| - 0.031 14.8 4.5 0.031 14.8 3.1 3.5 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314431|ref|YP_003849578.1| - 0.49 10.2 29.4 0.066 13.0 4.2 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain Zn_protease PF05618.6 gi|304314432|ref|YP_003849579.1| - 5.4e-10 39.0 0.1 3.4e-09 36.5 0.0 1.9 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|304314432|ref|YP_003849579.1| - 8.5e-05 22.0 0.1 0.0015 17.9 0.1 2.1 1 1 0 1 1 1 1 Polypeptide deformylase UPF0058 PF01893.11 gi|304314434|ref|YP_003849581.1| - 6.8e-32 109.3 0.9 8.1e-32 109.1 0.6 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Histidinol_dh PF00815.15 gi|304314435|ref|YP_003849582.1| - 1.5e-180 600.2 0.2 1.8e-180 600.0 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.15 gi|304314436|ref|YP_003849583.1| - 2.4e-93 312.5 0.1 3.4e-93 312.0 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|304314436|ref|YP_003849583.1| - 1.8e-13 50.1 0.2 3.1e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|304314436|ref|YP_003849583.1| - 0.0075 15.4 0.4 0.023 13.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) CbiC PF02570.10 gi|304314437|ref|YP_003849584.1| - 2e-63 213.4 2.5 2.3e-63 213.2 1.7 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase Aldo_ket_red PF00248.16 gi|304314437|ref|YP_003849584.1| - 0.11 11.3 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family Aminotran_3 PF00202.16 gi|304314438|ref|YP_003849585.1| - 1e-66 225.1 0.0 1.2e-66 224.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF4012 PF13196.1 gi|304314440|ref|YP_003849587.1| - 1.7e-33 115.7 0.1 3e-33 114.9 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4012) PTA_PTB PF01515.14 gi|304314441|ref|YP_003849588.1| - 0.015 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase DUF374 PF04028.8 gi|304314441|ref|YP_003849588.1| - 0.043 13.0 0.1 3.5 6.9 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF374) Prenyltransf PF01255.14 gi|304314442|ref|YP_003849589.1| - 4.2e-84 281.1 0.0 4.9e-84 280.9 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TatD_DNase PF01026.16 gi|304314443|ref|YP_003849590.1| - 1.3e-52 178.5 0.3 1.5e-52 178.3 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|304314443|ref|YP_003849590.1| - 0.028 14.0 0.6 0.24 10.9 0.4 2.2 1 1 0 1 1 1 0 Amidohydrolase AP_endonuc_2 PF01261.19 gi|304314443|ref|YP_003849590.1| - 0.048 12.9 0.6 0.33 10.1 0.5 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel CMD PF02627.15 gi|304314444|ref|YP_003849591.1| - 2.2e-23 81.9 0.2 2.8e-23 81.5 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family RibD_C PF01872.12 gi|304314445|ref|YP_003849592.1| - 7.2e-64 215.0 0.1 8.1e-64 214.9 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF483 PF04467.7 gi|304314446|ref|YP_003849593.1| - 7.2e-48 161.8 0.0 2.7e-47 160.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF483) CobN-Mg_chel PF02514.11 gi|304314447|ref|YP_003849594.1| - 2.5e-261 869.6 0.0 3.1e-153 511.7 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase SNARE_assoc PF09335.6 gi|304314448|ref|YP_003849595.1| - 3.2e-24 85.4 3.8 5.8e-24 84.6 2.6 1.4 1 0 0 1 1 1 1 SNARE associated Golgi protein GXGXG PF01493.14 gi|304314449|ref|YP_003849596.1| - 6.1e-56 188.6 8.7 3e-51 173.2 1.2 2.0 1 1 1 2 2 2 2 GXGXG motif DUF342 PF03961.8 gi|304314449|ref|YP_003849596.1| - 0.0048 15.3 1.2 0.0048 15.3 0.9 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF342) DIM PF08194.7 gi|304314449|ref|YP_003849596.1| - 0.17 11.8 3.1 0.27 11.2 0.0 3.0 4 0 0 4 4 4 0 DIM protein Rad17 PF03215.10 gi|304314451|ref|YP_003849598.1| - 2.7e-14 52.7 0.0 7.4e-08 31.5 0.0 2.9 2 1 1 3 3 3 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|304314451|ref|YP_003849598.1| - 6.7e-11 42.5 0.1 2.7e-10 40.5 0.0 2.1 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|304314451|ref|YP_003849598.1| - 2.7e-09 36.4 0.0 1.4e-08 34.0 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|304314451|ref|YP_003849598.1| - 1.5e-05 24.6 0.1 5.5e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_14 PF13173.1 gi|304314451|ref|YP_003849598.1| - 3.1e-05 23.8 0.0 9.1e-05 22.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|304314451|ref|YP_003849598.1| - 0.00012 22.0 0.1 0.0012 18.8 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|304314451|ref|YP_003849598.1| - 0.00013 21.6 0.0 0.00037 20.1 0.0 1.7 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_22 PF13401.1 gi|304314451|ref|YP_003849598.1| - 0.00019 21.6 2.0 0.013 15.6 0.3 3.3 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|304314451|ref|YP_003849598.1| - 0.00021 21.0 0.2 0.0095 15.6 0.1 3.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|304314451|ref|YP_003849598.1| - 0.0013 18.2 0.0 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|304314451|ref|YP_003849598.1| - 0.0015 18.3 0.1 1.9 8.1 0.0 2.4 2 0 0 2 2 2 2 NTPase AAA_18 PF13238.1 gi|304314451|ref|YP_003849598.1| - 0.0015 18.8 0.2 0.0098 16.1 0.0 2.5 3 0 0 3 3 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|304314451|ref|YP_003849598.1| - 0.0017 17.9 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|304314451|ref|YP_003849598.1| - 0.0017 19.1 0.5 0.011 16.5 0.4 2.4 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|304314451|ref|YP_003849598.1| - 0.0046 16.4 0.2 0.11 12.0 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|304314451|ref|YP_003849598.1| - 0.0054 16.8 0.0 0.012 15.7 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.16 gi|304314451|ref|YP_003849598.1| - 0.0076 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|304314451|ref|YP_003849598.1| - 0.0086 15.6 0.8 0.02 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|304314451|ref|YP_003849598.1| - 0.021 14.6 0.0 0.055 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|304314451|ref|YP_003849598.1| - 0.021 14.1 2.6 0.11 11.9 0.2 2.6 2 1 1 3 3 3 0 AAA domain Zeta_toxin PF06414.7 gi|304314451|ref|YP_003849598.1| - 0.033 13.2 0.0 0.083 11.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TIP49 PF06068.8 gi|304314451|ref|YP_003849598.1| - 0.035 12.8 0.0 0.36 9.4 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus Arch_ATPase PF01637.13 gi|304314451|ref|YP_003849598.1| - 0.054 13.1 1.3 0.25 11.0 0.0 2.5 3 0 0 3 3 3 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|304314451|ref|YP_003849598.1| - 0.057 13.4 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|304314451|ref|YP_003849598.1| - 0.089 13.0 0.1 0.26 11.5 0.0 2.0 1 1 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|304314451|ref|YP_003849598.1| - 0.1 12.4 1.0 0.38 10.5 0.0 2.2 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit Hc1 PF07432.8 gi|304314451|ref|YP_003849598.1| - 2.5 8.3 13.2 0.19 11.9 5.1 2.0 2 0 0 2 2 2 0 Histone H1-like protein Hc1 Rep_fac_C PF08542.6 gi|304314452|ref|YP_003849599.1| - 1.1e-22 79.7 0.0 2.3e-22 78.7 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|304314452|ref|YP_003849599.1| - 7.2e-17 61.8 0.0 1.5e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|304314452|ref|YP_003849599.1| - 2.2e-16 59.9 0.0 4.3e-14 52.4 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|304314452|ref|YP_003849599.1| - 4.5e-10 38.8 0.0 3.6e-06 25.9 0.0 2.4 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|304314452|ref|YP_003849599.1| - 8.1e-08 32.2 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|304314452|ref|YP_003849599.1| - 8.4e-08 31.5 0.7 4.1e-06 25.9 0.1 2.8 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta PF06144.8 gi|304314452|ref|YP_003849599.1| - 6.6e-07 29.0 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|304314452|ref|YP_003849599.1| - 4.7e-06 26.7 0.0 6.7e-05 22.9 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|304314452|ref|YP_003849599.1| - 1e-05 25.7 0.2 0.02 15.0 0.0 3.0 2 1 1 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|304314452|ref|YP_003849599.1| - 1.9e-05 23.9 0.0 0.0084 15.2 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|304314452|ref|YP_003849599.1| - 4.3e-05 23.0 0.0 0.00014 21.3 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|304314452|ref|YP_003849599.1| - 0.00062 20.0 0.0 0.002 18.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|304314452|ref|YP_003849599.1| - 0.00066 19.4 0.3 0.012 15.3 0.1 2.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|304314452|ref|YP_003849599.1| - 0.00068 20.4 0.0 0.0017 19.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314452|ref|YP_003849599.1| - 0.0013 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_2 PF07724.9 gi|304314452|ref|YP_003849599.1| - 0.0014 18.6 0.0 0.0064 16.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|304314452|ref|YP_003849599.1| - 0.0017 17.8 0.0 0.0081 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|304314452|ref|YP_003849599.1| - 0.0021 17.5 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|304314452|ref|YP_003849599.1| - 0.0028 17.2 0.0 0.0061 16.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|304314452|ref|YP_003849599.1| - 0.004 15.9 0.0 0.11 11.1 0.0 2.5 2 1 1 3 3 3 1 TIP49 C-terminus MobB PF03205.9 gi|304314452|ref|YP_003849599.1| - 0.01 15.5 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|304314452|ref|YP_003849599.1| - 0.011 14.9 0.0 0.2 10.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.17 gi|304314452|ref|YP_003849599.1| - 0.012 15.1 0.0 0.08 12.3 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ResIII PF04851.10 gi|304314452|ref|YP_003849599.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|304314452|ref|YP_003849599.1| - 0.014 15.5 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|304314452|ref|YP_003849599.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF3400 PF11880.3 gi|304314452|ref|YP_003849599.1| - 0.053 12.7 0.0 0.13 11.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) AAA_28 PF13521.1 gi|304314452|ref|YP_003849599.1| - 0.065 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|304314452|ref|YP_003849599.1| - 0.071 11.9 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.8 gi|304314452|ref|YP_003849599.1| - 0.091 11.6 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_11 PF13086.1 gi|304314452|ref|YP_003849599.1| - 0.098 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304314452|ref|YP_003849599.1| - 0.099 12.0 0.2 0.55 9.6 0.0 2.1 2 1 1 3 3 3 0 AAA-like domain DUF2877 PF11392.3 gi|304314452|ref|YP_003849599.1| - 0.13 12.4 0.1 1.5 9.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) DUF258 PF03193.11 gi|304314452|ref|YP_003849599.1| - 0.15 11.2 0.0 0.3 10.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|304314452|ref|YP_003849599.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Shikimate_dh_N PF08501.6 gi|304314453|ref|YP_003849600.1| - 2.9e-31 107.3 0.0 1.4e-30 105.1 0.0 2.1 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|304314453|ref|YP_003849600.1| - 4.9e-13 49.3 0.0 8.4e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|304314453|ref|YP_003849600.1| - 0.00046 20.5 0.0 0.00093 19.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|304314453|ref|YP_003849600.1| - 0.00051 18.9 0.0 0.0007 18.4 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|304314453|ref|YP_003849600.1| - 0.0036 16.3 0.0 0.0046 15.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|304314453|ref|YP_003849600.1| - 0.0039 17.2 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_2 PF00890.19 gi|304314453|ref|YP_003849600.1| - 0.0041 16.0 0.9 0.006 15.4 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|304314453|ref|YP_003849600.1| - 0.019 14.3 0.2 0.037 13.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|304314453|ref|YP_003849600.1| - 0.028 14.3 0.3 0.044 13.6 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|304314453|ref|YP_003849600.1| - 0.036 12.9 0.3 0.069 12.0 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|304314453|ref|YP_003849600.1| - 0.045 13.4 0.1 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|304314453|ref|YP_003849600.1| - 0.047 12.1 0.1 0.065 11.6 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox PF00070.22 gi|304314453|ref|YP_003849600.1| - 0.11 12.8 0.6 0.32 11.4 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UPF0278 PF08745.6 gi|304314454|ref|YP_003849601.1| - 1.3e-91 305.4 0.1 1.4e-91 305.3 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family tRNA-synt_His PF13393.1 gi|304314455|ref|YP_003849602.1| - 4.7e-71 239.3 0.0 6.2e-71 239.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|304314455|ref|YP_003849602.1| - 5.9e-27 94.3 0.1 1.1e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|304314455|ref|YP_003849602.1| - 1.7e-16 59.9 0.2 3e-16 59.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|304314455|ref|YP_003849602.1| - 4.3e-05 22.4 3.1 0.0059 15.4 0.8 2.8 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|304314455|ref|YP_003849602.1| - 0.00029 20.0 0.2 0.00084 18.5 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PRA-CH PF01502.13 gi|304314456|ref|YP_003849603.1| - 2.6e-37 126.2 0.2 3.3e-37 125.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Tropomodulin PF03250.9 gi|304314456|ref|YP_003849603.1| - 0.025 14.0 0.0 0.05 13.1 0.0 1.4 2 0 0 2 2 2 0 Tropomodulin PIN PF01850.16 gi|304314457|ref|YP_003849604.1| - 3.9e-11 43.3 0.0 1.5e-10 41.4 0.0 2.1 1 0 0 1 1 1 1 PIN domain T2SE PF00437.15 gi|304314457|ref|YP_003849604.1| - 6.9e-11 41.5 0.1 1.5e-10 40.4 0.1 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|304314457|ref|YP_003849604.1| - 2.6e-08 33.3 0.5 9.9e-08 31.5 0.4 2.1 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|304314457|ref|YP_003849604.1| - 5.3e-05 24.0 0.9 0.00024 21.9 0.0 2.6 3 2 0 3 3 2 1 AAA domain KH_3 PF13014.1 gi|304314457|ref|YP_003849604.1| - 0.00034 20.1 0.7 0.00095 18.7 0.5 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|304314457|ref|YP_003849604.1| - 0.00046 19.6 2.7 0.00046 19.6 1.8 2.1 2 0 0 2 2 1 1 KH domain Thymidylate_kin PF02223.12 gi|304314457|ref|YP_003849604.1| - 0.00062 19.1 0.0 0.0016 17.8 0.0 1.8 1 0 0 1 1 1 1 Thymidylate kinase AAA_25 PF13481.1 gi|304314457|ref|YP_003849604.1| - 0.0021 17.5 0.0 0.0093 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304314457|ref|YP_003849604.1| - 0.0021 18.3 0.0 0.013 15.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|304314457|ref|YP_003849604.1| - 0.0021 18.1 0.0 0.058 13.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|304314457|ref|YP_003849604.1| - 0.0031 17.2 0.0 0.0072 16.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|304314457|ref|YP_003849604.1| - 0.0035 16.8 0.0 0.2 11.1 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|304314457|ref|YP_003849604.1| - 0.0043 16.1 0.1 0.012 14.6 0.0 1.8 2 0 0 2 2 1 1 Zeta toxin AAA_16 PF13191.1 gi|304314457|ref|YP_003849604.1| - 0.0046 16.9 0.0 0.009 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|304314457|ref|YP_003849604.1| - 0.0092 15.4 0.0 0.026 14.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|304314457|ref|YP_003849604.1| - 0.013 15.3 0.2 0.033 14.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|304314457|ref|YP_003849604.1| - 0.013 15.2 0.0 0.035 13.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|304314457|ref|YP_003849604.1| - 0.015 14.8 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|304314457|ref|YP_003849604.1| - 0.016 14.6 0.0 0.035 13.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|304314457|ref|YP_003849604.1| - 0.022 14.2 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.24 gi|304314457|ref|YP_003849604.1| - 0.038 14.1 0.0 0.088 13.0 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|304314457|ref|YP_003849604.1| - 0.046 13.7 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|304314457|ref|YP_003849604.1| - 0.048 13.9 0.0 0.15 12.3 0.0 1.9 2 0 0 2 2 1 0 ABC transporter DUF815 PF05673.8 gi|304314457|ref|YP_003849604.1| - 0.052 12.4 0.0 0.17 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|304314457|ref|YP_003849604.1| - 0.056 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIN_4 PF13638.1 gi|304314457|ref|YP_003849604.1| - 0.06 13.4 0.1 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 PIN domain AAA_28 PF13521.1 gi|304314457|ref|YP_003849604.1| - 0.075 12.9 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|304314457|ref|YP_003849604.1| - 0.083 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|304314457|ref|YP_003849604.1| - 0.088 12.4 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|304314457|ref|YP_003849604.1| - 0.15 11.2 0.0 0.45 9.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|304314457|ref|YP_003849604.1| - 0.16 10.7 0.0 1.5 7.6 0.0 2.4 3 0 0 3 3 3 0 NB-ARC domain AP_endonuc_2 PF01261.19 gi|304314458|ref|YP_003849605.1| - 4.2e-22 78.4 0.1 7.1e-22 77.7 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|304314458|ref|YP_003849605.1| - 0.092 12.3 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus F420_oxidored PF03807.12 gi|304314459|ref|YP_003849606.1| - 1.7e-21 76.4 4.3 1.9e-21 76.2 2.3 1.6 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|304314459|ref|YP_003849606.1| - 1.6e-05 24.2 1.9 2.2e-05 23.8 0.5 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|304314459|ref|YP_003849606.1| - 5.4e-05 22.6 0.7 9.3e-05 21.9 0.5 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|304314459|ref|YP_003849606.1| - 0.00054 19.8 0.7 0.0012 18.7 0.5 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|304314459|ref|YP_003849606.1| - 0.0012 18.8 3.4 0.0016 18.4 1.0 2.0 2 0 0 2 2 2 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|304314459|ref|YP_003849606.1| - 0.0024 17.6 1.1 0.0056 16.4 0.8 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|304314459|ref|YP_003849606.1| - 0.01 16.1 1.9 0.016 15.5 0.8 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.12 gi|304314459|ref|YP_003849606.1| - 0.011 14.6 0.9 0.018 13.9 0.6 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase NmrA PF05368.8 gi|304314459|ref|YP_003849606.1| - 0.021 14.0 2.3 0.039 13.1 1.3 1.7 2 0 0 2 2 2 0 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|304314459|ref|YP_003849606.1| - 0.024 14.0 0.4 0.053 12.8 0.3 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|304314459|ref|YP_003849606.1| - 0.083 12.5 3.4 0.15 11.7 2.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|304314459|ref|YP_003849606.1| - 0.9 9.4 8.3 0.29 11.0 2.9 2.1 2 1 0 2 2 2 0 short chain dehydrogenase KR PF08659.5 gi|304314459|ref|YP_003849606.1| - 1.9 8.1 5.4 1.1 8.8 1.3 2.1 2 1 0 2 2 2 0 KR domain SIS PF01380.17 gi|304314460|ref|YP_003849607.1| - 1.3e-17 63.6 0.2 2e-17 63.0 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|304314460|ref|YP_003849607.1| - 4.3e-08 32.9 4.3 6.5e-05 22.6 0.3 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|304314460|ref|YP_003849607.1| - 0.0039 16.2 0.9 0.013 14.5 0.8 1.8 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|304314460|ref|YP_003849607.1| - 0.026 13.6 0.6 0.35 10.0 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L_biotic_typeA PF04604.8 gi|304314460|ref|YP_003849607.1| - 0.12 12.0 0.5 0.35 10.5 0.3 1.8 1 0 0 1 1 1 0 Type-A lantibiotic tRNA_int_endo PF01974.12 gi|304314461|ref|YP_003849608.1| - 5.7e-32 109.3 0.5 1e-31 108.5 0.4 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|304314461|ref|YP_003849608.1| - 2.4e-18 65.4 0.1 6.6e-18 64.0 0.1 1.8 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.20 gi|304314462|ref|YP_003849609.1| - 2.4e-57 194.3 0.0 2.8e-57 194.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF95 PF01944.12 gi|304314463|ref|YP_003849610.1| - 5.5e-29 101.0 16.0 7.2e-29 100.6 11.1 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF3188 PF11384.3 gi|304314463|ref|YP_003849610.1| - 0.4 10.2 6.4 26 4.5 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) PALP PF00291.20 gi|304314464|ref|YP_003849611.1| - 2e-70 237.4 0.8 2.4e-70 237.2 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.1 gi|304314464|ref|YP_003849611.1| - 0.022 14.2 0.8 0.045 13.2 0.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|304314464|ref|YP_003849611.1| - 0.041 13.5 0.4 31 4.3 0.0 3.3 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|304314464|ref|YP_003849611.1| - 0.095 12.4 2.3 0.23 11.2 1.6 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|304314464|ref|YP_003849611.1| - 0.12 12.1 1.7 0.21 11.2 1.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|304314464|ref|YP_003849611.1| - 0.2 11.2 2.1 1.4 8.5 1.0 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|304314464|ref|YP_003849611.1| - 0.26 11.7 1.2 0.62 10.5 0.8 1.5 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon C1_3 PF07649.7 gi|304314464|ref|YP_003849611.1| - 0.28 11.2 3.2 0.51 10.4 2.2 1.4 1 0 0 1 1 1 0 C1-like domain zinc_ribbon_4 PF13717.1 gi|304314464|ref|YP_003849611.1| - 0.41 10.3 2.8 2.3 7.9 1.4 2.4 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|304314464|ref|YP_003849611.1| - 0.49 9.9 2.5 0.99 8.9 1.8 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain C1_2 PF03107.11 gi|304314464|ref|YP_003849611.1| - 0.7 10.0 4.2 1.4 9.1 2.9 1.5 1 0 0 1 1 1 0 C1 domain TF_Zn_Ribbon PF08271.7 gi|304314464|ref|YP_003849611.1| - 1.2 8.4 10.2 4.5 6.6 4.4 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding CBFD_NFYB_HMF PF00808.18 gi|304314465|ref|YP_003849612.1| - 1.5e-20 72.9 0.7 1.7e-20 72.8 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|304314465|ref|YP_003849612.1| - 1.1e-12 47.9 0.1 1.2e-12 47.7 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|304314465|ref|YP_003849612.1| - 1.7e-06 27.8 0.2 1.9e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|304314465|ref|YP_003849612.1| - 9.3e-06 25.7 0.0 9.9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|304314465|ref|YP_003849612.1| - 0.00039 20.6 0.1 0.00044 20.4 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|304314465|ref|YP_003849612.1| - 0.014 14.6 0.9 0.015 14.5 0.6 1.3 1 1 0 1 1 1 0 Centromere kinetochore component CENP-T Bromo_TP PF07524.8 gi|304314465|ref|YP_003849612.1| - 0.014 15.1 0.0 0.016 14.9 0.0 1.0 1 0 0 1 1 1 0 Bromodomain associated DUF1931 PF09123.6 gi|304314465|ref|YP_003849612.1| - 0.065 13.1 0.2 0.074 13.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) TFIID-31kDa PF02291.10 gi|304314465|ref|YP_003849612.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Ribosomal_L7Ae PF01248.21 gi|304314466|ref|YP_003849613.1| - 2.1e-28 97.6 0.2 2.5e-28 97.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|304314466|ref|YP_003849613.1| - 0.0022 18.2 0.2 0.0027 17.9 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 3 RNase_P_pop3 PF08228.6 gi|304314466|ref|YP_003849613.1| - 0.0026 17.6 0.0 0.0029 17.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|304314466|ref|YP_003849613.1| - 0.007 16.1 0.1 0.0097 15.6 0.1 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain Phage_CP76 PF06892.6 gi|304314466|ref|YP_003849613.1| - 0.025 13.8 0.3 0.058 12.7 0.1 1.6 1 1 0 1 1 1 0 Phage regulatory protein CII (CP76) DUF1269 PF06897.7 gi|304314466|ref|YP_003849613.1| - 0.072 13.1 1.6 4.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|304314467|ref|YP_003849614.1| - 3.3e-31 106.8 2.5 3.6e-31 106.7 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|304314468|ref|YP_003849615.1| - 1.5e-20 72.7 1.4 1.6e-20 72.7 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|304314468|ref|YP_003849615.1| - 2.5e-05 23.8 3.2 3.3e-05 23.4 2.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|304314468|ref|YP_003849615.1| - 0.00059 19.6 2.1 0.00073 19.3 1.4 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|304314468|ref|YP_003849615.1| - 0.022 14.9 1.8 0.051 13.7 1.2 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain DUF581 PF04570.9 gi|304314468|ref|YP_003849615.1| - 0.022 14.0 2.1 0.04 13.2 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF581) LIM PF00412.17 gi|304314468|ref|YP_003849615.1| - 0.12 12.4 1.4 0.41 10.7 1.0 1.7 1 1 0 1 1 1 0 LIM domain Gin PF10764.4 gi|304314468|ref|YP_003849615.1| - 2.5 7.9 5.1 16 5.2 3.5 2.1 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin NDK PF00334.14 gi|304314469|ref|YP_003849616.1| - 3.5e-58 195.2 0.0 3.9e-58 195.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|304314470|ref|YP_003849617.1| - 1.3e-35 122.4 0.2 6.8e-35 120.2 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|304314470|ref|YP_003849617.1| - 3.9e-20 71.7 3.0 3.9e-20 71.7 2.1 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|304314470|ref|YP_003849617.1| - 3.3e-14 52.2 0.5 3.3e-14 52.2 0.4 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|304314470|ref|YP_003849617.1| - 7.1e-12 45.2 6.1 4.2e-10 39.6 0.0 3.5 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|304314470|ref|YP_003849617.1| - 2.7e-06 27.3 0.0 9.5e-06 25.5 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|304314470|ref|YP_003849617.1| - 8e-05 22.2 0.0 0.00027 20.5 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|304314470|ref|YP_003849617.1| - 0.0017 18.1 0.0 0.067 13.0 0.0 2.7 1 1 1 2 2 2 1 Dynamin family PduV-EutP PF10662.4 gi|304314470|ref|YP_003849617.1| - 0.014 14.8 0.0 1.8 8.0 0.0 3.1 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|304314470|ref|YP_003849617.1| - 0.056 13.9 0.0 0.17 12.3 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein Ribosomal_S6e PF01092.14 gi|304314471|ref|YP_003849618.1| - 5.3e-37 126.3 0.9 6.5e-37 125.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|304314472|ref|YP_003849619.1| - 4.8e-44 150.0 0.2 7.3e-44 149.4 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|304314472|ref|YP_003849619.1| - 8.4e-33 112.2 0.1 1.9e-32 111.1 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|304314472|ref|YP_003849619.1| - 3.8e-08 33.3 1.1 1.4e-07 31.5 0.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|304314472|ref|YP_003849619.1| - 0.00035 20.0 0.7 0.16 11.4 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation PolC_DP2 PF03833.8 gi|304314472|ref|YP_003849619.1| - 0.00054 17.7 0.6 0.00073 17.3 0.4 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 MMR_HSR1 PF01926.18 gi|304314472|ref|YP_003849619.1| - 0.00075 19.4 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Nop10p PF04135.7 gi|304314472|ref|YP_003849619.1| - 0.014 15.1 1.1 0.031 14.0 0.8 1.6 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family DLIC PF05783.6 gi|304314472|ref|YP_003849619.1| - 0.017 13.8 0.0 2.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) zf-ribbon_3 PF13248.1 gi|304314472|ref|YP_003849619.1| - 0.036 13.2 4.1 0.066 12.4 2.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain ArgK PF03308.11 gi|304314472|ref|YP_003849619.1| - 0.06 12.1 1.1 0.15 10.8 0.1 2.0 2 0 0 2 2 2 0 ArgK protein UPF0547 PF10571.4 gi|304314472|ref|YP_003849619.1| - 0.42 10.3 5.9 1.1 8.9 4.1 1.8 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|304314472|ref|YP_003849619.1| - 2.2 7.8 5.2 5 6.7 3.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Fcf1 PF04900.7 gi|304314473|ref|YP_003849620.1| - 2.7e-07 30.6 0.0 6.9e-07 29.2 0.0 1.6 1 1 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|304314473|ref|YP_003849620.1| - 0.0001 22.4 0.0 0.45 10.6 0.0 2.1 1 1 1 2 2 2 2 PIN domain Pyrophosphatase PF00719.14 gi|304314474|ref|YP_003849621.1| - 1.7e-59 199.7 0.0 2e-59 199.5 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase SHS2_Rpb7-N PF03876.12 gi|304314475|ref|YP_003849622.1| - 1.3e-17 63.6 0.0 2.2e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|304314475|ref|YP_003849622.1| - 5.8e-13 48.7 0.4 1.1e-12 47.7 0.3 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.8 gi|304314476|ref|YP_003849623.1| - 2.3e-15 56.2 0.7 4.8e-15 55.2 0.5 1.5 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|304314476|ref|YP_003849623.1| - 0.0072 15.7 2.8 0.01 15.2 1.9 1.2 1 0 0 1 1 1 1 RecR protein zf-P11 PF03854.9 gi|304314476|ref|YP_003849623.1| - 0.065 12.7 1.5 0.1 12.1 1.0 1.3 1 0 0 1 1 1 0 P-11 zinc finger zf-C3HC4_3 PF13920.1 gi|304314476|ref|YP_003849623.1| - 0.19 11.3 3.9 0.27 10.9 2.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|304314476|ref|YP_003849623.1| - 0.2 11.4 0.7 0.28 10.9 0.5 1.3 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Rubredoxin PF00301.15 gi|304314476|ref|YP_003849623.1| - 0.73 9.7 3.2 1.3 8.9 1.5 1.9 2 1 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|304314476|ref|YP_003849623.1| - 0.85 9.4 3.3 9.8 6.0 2.2 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF359 PF04019.7 gi|304314477|ref|YP_003849624.1| - 2e-39 133.7 0.0 2.5e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF1842 PF08896.5 gi|304314477|ref|YP_003849624.1| - 0.043 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1842) Ribosomal_S24e PF01282.14 gi|304314478|ref|YP_003849625.1| - 2.4e-27 94.5 0.2 2.9e-27 94.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|304314479|ref|YP_003849626.1| - 1.7e-20 72.5 4.3 2e-20 72.3 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a NCD3G PF07562.9 gi|304314479|ref|YP_003849626.1| - 0.0071 16.0 0.3 0.0091 15.6 0.2 1.1 1 0 0 1 1 1 1 Nine Cysteines Domain of family 3 GPCR zf-C3HC4_4 PF15227.1 gi|304314479|ref|YP_003849626.1| - 0.032 14.1 0.5 0.041 13.7 0.4 1.2 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING DZR PF12773.2 gi|304314479|ref|YP_003849626.1| - 0.035 13.9 0.3 0.043 13.6 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon GCC2_GCC3 PF07699.8 gi|304314479|ref|YP_003849626.1| - 0.037 13.6 0.5 0.042 13.4 0.3 1.1 1 0 0 1 1 1 0 GCC2 and GCC3 Ribosomal_L37e PF01907.14 gi|304314479|ref|YP_003849626.1| - 0.048 13.4 1.2 0.059 13.1 0.8 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_4 PF13717.1 gi|304314479|ref|YP_003849626.1| - 0.075 12.7 0.3 5.5 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|304314479|ref|YP_003849626.1| - 0.075 12.9 1.6 3 7.8 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|304314479|ref|YP_003849626.1| - 0.097 12.2 0.6 5 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|304314479|ref|YP_003849626.1| - 0.12 12.0 4.4 1.5 8.5 3.1 2.2 2 1 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|304314479|ref|YP_003849626.1| - 0.13 11.7 1.7 0.32 10.5 1.1 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|304314479|ref|YP_003849626.1| - 0.83 9.3 6.0 6.2 6.6 3.5 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2082 PF09855.4 gi|304314479|ref|YP_003849626.1| - 1 9.2 3.6 1.3 8.9 0.3 2.2 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lyase_1 PF00206.15 gi|304314480|ref|YP_003849627.1| - 1.3e-67 228.2 0.4 1.7e-67 227.8 0.3 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|304314480|ref|YP_003849627.1| - 1.2e-17 63.7 0.0 5.4e-17 61.6 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Peptidase_M24 PF00557.19 gi|304314480|ref|YP_003849627.1| - 0.013 15.0 0.5 0.041 13.4 0.4 1.9 1 1 0 1 1 1 0 Metallopeptidase family M24 DUF3096 PF11295.3 gi|304314481|ref|YP_003849628.1| - 4.1e-05 22.9 11.8 5e-05 22.7 8.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|304314481|ref|YP_003849628.1| - 0.013 15.4 11.3 0.025 14.5 7.8 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2065 PF09838.4 gi|304314481|ref|YP_003849628.1| - 0.11 12.2 2.7 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF4225 PF13988.1 gi|304314481|ref|YP_003849628.1| - 0.14 11.6 0.2 0.15 11.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) Flp_Fap PF04964.9 gi|304314481|ref|YP_003849628.1| - 0.33 10.5 4.0 0.34 10.5 1.7 1.7 1 1 1 2 2 2 0 Flp/Fap pilin component COPI_assoc PF08507.5 gi|304314481|ref|YP_003849628.1| - 0.81 9.3 5.8 0.91 9.2 4.1 1.1 1 0 0 1 1 1 0 COPI associated protein PGPGW PF09656.5 gi|304314481|ref|YP_003849628.1| - 1.2 8.5 12.1 13 5.1 8.1 2.0 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) IncA PF04156.9 gi|304314481|ref|YP_003849628.1| - 2.3 7.7 5.3 2.7 7.5 3.7 1.1 1 0 0 1 1 1 0 IncA protein KH_1 PF00013.24 gi|304314482|ref|YP_003849629.1| - 0.021 14.4 0.2 0.041 13.5 0.1 1.4 1 0 0 1 1 1 0 KH domain KH_4 PF13083.1 gi|304314482|ref|YP_003849629.1| - 0.066 12.8 0.2 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 KH domain Thiolase_N PF00108.18 gi|304314482|ref|YP_003849629.1| - 0.13 11.2 0.0 0.25 10.2 0.0 1.4 1 0 0 1 1 1 0 Thiolase, N-terminal domain KH_2 PF07650.12 gi|304314482|ref|YP_003849629.1| - 0.48 10.0 2.6 0.44 10.1 0.4 2.0 2 0 0 2 2 2 0 KH domain Hexapep PF00132.19 gi|304314483|ref|YP_003849630.1| - 9.2e-29 97.6 11.3 1.9e-09 36.5 0.5 4.3 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|304314483|ref|YP_003849630.1| - 1.7e-17 62.6 4.6 1.2e-05 24.7 0.0 4.3 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase PBP PF01161.15 gi|304314484|ref|YP_003849631.1| - 8.9e-44 148.8 0.0 1e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein AAA_16 PF13191.1 gi|304314485|ref|YP_003849632.1| - 6.1e-05 23.0 0.0 0.00016 21.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|304314485|ref|YP_003849632.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain UbiA PF01040.13 gi|304314486|ref|YP_003849633.1| - 7.4e-23 81.0 17.0 7.4e-23 81.0 11.8 1.8 1 1 1 2 2 2 2 UbiA prenyltransferase family FAD_binding_3 PF01494.14 gi|304314487|ref|YP_003849634.1| - 9.3e-17 61.1 1.2 5.5e-13 48.7 0.2 2.4 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|304314487|ref|YP_003849634.1| - 4.5e-10 38.9 0.0 4.4e-07 29.1 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|304314487|ref|YP_003849634.1| - 4.6e-09 35.4 0.4 1.6e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|304314487|ref|YP_003849634.1| - 9.4e-09 35.4 0.3 6.4e-08 32.7 0.2 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|304314487|ref|YP_003849634.1| - 2e-08 33.5 5.9 9.6e-05 21.4 0.6 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|304314487|ref|YP_003849634.1| - 6.8e-08 32.0 3.9 2.7e-07 30.0 2.7 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|304314487|ref|YP_003849634.1| - 1.5e-06 26.9 2.5 1.9e-06 26.6 0.7 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|304314487|ref|YP_003849634.1| - 1.1e-05 24.5 3.6 1.3e-05 24.2 1.2 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|304314487|ref|YP_003849634.1| - 2e-05 24.5 1.5 2.7e-05 24.1 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|304314487|ref|YP_003849634.1| - 0.00013 20.9 1.7 0.00013 20.9 1.2 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|304314487|ref|YP_003849634.1| - 0.0018 17.4 2.4 0.0021 17.1 0.6 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|304314487|ref|YP_003849634.1| - 0.019 15.2 0.1 0.037 14.2 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|304314487|ref|YP_003849634.1| - 0.019 15.0 0.1 0.03 14.3 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|304314487|ref|YP_003849634.1| - 0.025 14.2 0.7 0.065 12.8 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|304314487|ref|YP_003849634.1| - 0.064 12.8 0.3 0.14 11.7 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|304314487|ref|YP_003849634.1| - 0.14 12.3 1.3 0.29 11.2 0.2 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Fer4 PF00037.22 gi|304314488|ref|YP_003849635.1| - 5.9e-13 47.8 10.5 1.6e-06 27.4 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314488|ref|YP_003849635.1| - 4.4e-09 36.5 10.2 5.6e-09 36.2 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314488|ref|YP_003849635.1| - 3e-08 33.3 10.5 4.8e-08 32.7 7.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314488|ref|YP_003849635.1| - 6.5e-08 32.7 23.8 3.8e-06 27.0 9.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314488|ref|YP_003849635.1| - 2e-07 31.6 9.5 0.0016 19.1 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|304314488|ref|YP_003849635.1| - 6.8e-07 28.9 12.6 1.1e-06 28.2 8.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314488|ref|YP_003849635.1| - 9.8e-06 25.2 13.1 0.00014 21.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314488|ref|YP_003849635.1| - 3e-05 23.6 11.9 0.00088 19.0 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314488|ref|YP_003849635.1| - 0.0002 21.6 10.5 0.029 14.7 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314488|ref|YP_003849635.1| - 0.00026 20.9 13.2 0.002 18.1 9.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314488|ref|YP_003849635.1| - 0.00085 19.7 18.3 0.021 15.3 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304314488|ref|YP_003849635.1| - 0.0012 19.0 15.3 0.05 13.9 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|304314488|ref|YP_003849635.1| - 0.0041 17.5 14.8 0.031 14.7 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314488|ref|YP_003849635.1| - 0.02 15.2 8.4 0.71 10.2 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304314488|ref|YP_003849635.1| - 0.11 12.3 7.4 0.17 11.7 5.1 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314488|ref|YP_003849635.1| - 0.88 10.1 12.8 0.69 10.5 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S single cluster domain SoxE PF06525.6 gi|304314489|ref|YP_003849636.1| - 0.071 12.3 2.4 0.55 9.4 0.3 2.0 1 1 0 2 2 2 0 Sulfocyanin (SoxE) FrhB_FdhB_C PF04432.8 gi|304314490|ref|YP_003849637.1| - 8.1e-39 132.6 0.0 2.2e-38 131.2 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.17 gi|304314490|ref|YP_003849637.1| - 6.1e-34 116.6 0.3 1e-33 115.8 0.2 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.8 gi|304314490|ref|YP_003849637.1| - 9.2e-20 70.2 0.0 2.9e-19 68.7 0.0 1.8 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|304314490|ref|YP_003849637.1| - 6.7e-12 44.4 39.4 1.1e-05 24.7 0.9 4.9 5 0 0 5 5 4 3 4Fe-4S binding domain NIR_SIR_ferr PF03460.12 gi|304314490|ref|YP_003849637.1| - 8.5e-11 41.3 0.0 2.4e-10 39.8 0.0 1.8 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_6 PF12837.2 gi|304314490|ref|YP_003849637.1| - 7.9e-10 38.1 34.0 6.7e-05 22.5 1.7 4.9 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314490|ref|YP_003849637.1| - 4.9e-09 36.4 33.5 1.3e-06 28.6 8.1 3.6 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304314490|ref|YP_003849637.1| - 1.3e-08 34.7 17.7 0.0016 18.4 7.6 4.2 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314490|ref|YP_003849637.1| - 2.5e-08 34.5 22.7 0.011 16.4 1.0 4.8 4 1 1 5 5 4 3 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|304314490|ref|YP_003849637.1| - 3.4e-07 29.9 36.4 6.6e-05 22.6 8.6 3.7 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314490|ref|YP_003849637.1| - 6.2e-07 29.1 25.8 2.9e-05 23.8 7.7 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314490|ref|YP_003849637.1| - 8.8e-07 29.1 34.3 1.5e-05 25.1 8.9 3.8 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314490|ref|YP_003849637.1| - 1.8e-06 28.2 26.6 0.019 15.3 0.1 4.5 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314490|ref|YP_003849637.1| - 9.7e-05 22.6 21.4 0.2 12.0 0.1 4.8 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314490|ref|YP_003849637.1| - 0.00016 21.3 39.2 0.015 15.1 1.6 5.6 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314490|ref|YP_003849637.1| - 0.015 15.8 0.2 0.015 15.8 0.1 6.5 6 1 1 7 7 6 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|304314490|ref|YP_003849637.1| - 0.097 13.0 40.0 0.035 14.4 1.7 5.6 6 0 0 6 6 5 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304314490|ref|YP_003849637.1| - 7 7.4 52.7 0.15 12.6 2.9 5.6 7 0 0 7 7 5 0 4Fe-4S binding domain PadR PF03551.9 gi|304314491|ref|YP_003849638.1| - 3.4e-22 77.9 0.6 4.4e-22 77.6 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|304314491|ref|YP_003849638.1| - 0.015 15.3 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.12 gi|304314491|ref|YP_003849638.1| - 0.019 14.5 0.1 0.026 14.1 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|304314491|ref|YP_003849638.1| - 0.04 12.0 0.1 0.047 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.14 gi|304314491|ref|YP_003849638.1| - 0.043 13.5 0.1 0.54 10.0 0.0 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ZipA_C PF04354.8 gi|304314491|ref|YP_003849638.1| - 0.071 12.5 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain HisKA_2 PF07568.7 gi|304314492|ref|YP_003849639.1| - 2.3e-19 68.9 2.6 6.3e-19 67.6 1.8 1.8 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|304314492|ref|YP_003849639.1| - 6.4e-09 35.5 0.0 3.3e-08 33.2 0.0 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|304314492|ref|YP_003849639.1| - 9.8e-07 29.1 0.7 2.1e-06 28.0 0.5 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|304314492|ref|YP_003849639.1| - 4.3e-05 23.2 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|304314492|ref|YP_003849639.1| - 0.029 14.1 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold PAS_8 PF13188.1 gi|304314492|ref|YP_003849639.1| - 0.056 13.3 0.1 0.24 11.3 0.0 2.1 2 0 0 2 2 2 0 PAS domain PIG-F PF06699.6 gi|304314492|ref|YP_003849639.1| - 2.6 7.9 9.4 1.1 9.1 0.7 2.4 1 1 1 2 2 2 0 GPI biosynthesis protein family Pig-F Flavodoxin_2 PF02525.12 gi|304314493|ref|YP_003849640.1| - 5.6e-36 123.9 0.0 6.4e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|304314493|ref|YP_003849640.1| - 6.7e-11 41.9 0.0 7.9e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|304314493|ref|YP_003849640.1| - 0.16 11.3 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin VWA PF00092.23 gi|304314493|ref|YP_003849640.1| - 0.18 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain NikR_C PF08753.6 gi|304314494|ref|YP_003849641.1| - 1.4e-22 79.3 3.8 1.9e-22 78.9 2.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|304314494|ref|YP_003849641.1| - 7e-05 22.5 1.4 0.00012 21.7 0.1 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family FliG_N PF14842.1 gi|304314494|ref|YP_003849641.1| - 0.0092 16.0 0.3 3.4 7.8 0.1 2.7 2 1 1 3 3 3 2 FliG N-terminal domain DUF1796 PF08795.5 gi|304314494|ref|YP_003849641.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.3 1 1 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) DUF3426 PF11906.3 gi|304314497|ref|YP_003849644.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) DUF1894 PF08979.6 gi|304314497|ref|YP_003849644.1| - 0.12 12.4 0.2 5.4 7.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1894) DUF4412 PF14371.1 gi|304314498|ref|YP_003849645.1| - 0.02 15.3 0.2 0.039 14.4 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4412) DUF4245 PF14030.1 gi|304314498|ref|YP_003849645.1| - 0.15 11.8 0.0 0.43 10.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) KAP_NTPase PF07693.9 gi|304314500|ref|YP_003849647.1| - 4.3e-42 144.2 11.4 4.4e-40 137.6 7.8 2.8 1 1 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.1 gi|304314500|ref|YP_003849647.1| - 2e-06 27.9 0.0 7.1e-06 26.1 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|304314500|ref|YP_003849647.1| - 2.4e-06 27.7 0.8 1.6e-05 25.0 0.0 2.7 3 1 0 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|304314500|ref|YP_003849647.1| - 0.00032 19.6 0.4 0.00074 18.4 0.3 1.6 1 0 0 1 1 1 1 NB-ARC domain MMR_HSR1 PF01926.18 gi|304314500|ref|YP_003849647.1| - 0.0057 16.5 2.1 0.05 13.5 1.5 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|304314500|ref|YP_003849647.1| - 0.0093 16.1 3.6 0.061 13.5 0.6 3.2 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|304314500|ref|YP_003849647.1| - 0.01 15.4 0.1 0.18 11.3 0.0 2.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2791 PF10923.3 gi|304314500|ref|YP_003849647.1| - 0.01 14.4 0.1 0.064 11.8 0.0 2.3 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) AAA_17 PF13207.1 gi|304314500|ref|YP_003849647.1| - 0.017 15.9 2.1 0.095 13.5 0.2 3.2 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|304314500|ref|YP_003849647.1| - 0.042 14.1 4.2 0.047 13.9 1.5 2.2 2 1 0 2 2 2 0 ABC transporter cobW PF02492.14 gi|304314500|ref|YP_003849647.1| - 0.12 11.7 1.3 0.18 11.2 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.14 gi|304314500|ref|YP_003849647.1| - 0.8 8.8 4.7 0.49 9.5 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain NTP_transf_2 PF01909.18 gi|304314501|ref|YP_003849648.1| - 2.6e-09 37.2 1.1 3.2e-09 36.9 0.8 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|304314501|ref|YP_003849648.1| - 0.036 13.6 0.0 0.076 12.6 0.0 1.6 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.12 gi|304314502|ref|YP_003849649.1| - 5.5e-29 100.2 0.1 6.6e-29 99.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 PMBR PF09373.5 gi|304314503|ref|YP_003849650.1| - 3.1e-15 55.2 5.9 3.9e-05 23.3 0.1 4.2 4 0 0 4 4 4 3 Pseudomurein-binding repeat Chlam_PMP PF02415.12 gi|304314503|ref|YP_003849650.1| - 6.5e-05 22.9 31.1 3 8.3 0.2 9.0 8 0 0 8 8 8 3 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Adeno_E1B_55K PF01696.12 gi|304314503|ref|YP_003849650.1| - 0.0071 14.8 0.2 0.17 10.3 0.0 2.2 2 0 0 2 2 2 1 Adenovirus EB1 55K protein / large t-antigen SUN PF03856.8 gi|304314503|ref|YP_003849650.1| - 0.054 12.7 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-glucosidase (SUN family) PMBR PF09373.5 gi|304314504|ref|YP_003849651.1| - 1.9e-14 52.8 0.7 1.1e-05 25.0 0.1 4.0 3 0 0 3 3 3 2 Pseudomurein-binding repeat CARDB PF07705.6 gi|304314504|ref|YP_003849651.1| - 0.00039 20.4 0.1 0.0063 16.5 0.0 2.9 2 0 0 2 2 2 1 CARDB Chlam_PMP PF02415.12 gi|304314504|ref|YP_003849651.1| - 0.035 14.3 45.5 1.8 9.0 0.1 10.5 10 0 0 10 10 10 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat DUF86 PF01934.12 gi|304314505|ref|YP_003849652.1| - 4.1e-26 90.9 0.0 5e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.1 gi|304314505|ref|YP_003849652.1| - 0.022 14.5 0.0 0.059 13.2 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4145) NPV_P10 PF05531.7 gi|304314505|ref|YP_003849652.1| - 0.12 12.6 0.0 2 8.7 0.0 2.4 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein NTP_transf_2 PF01909.18 gi|304314506|ref|YP_003849653.1| - 8.5e-08 32.4 0.5 1e-07 32.1 0.4 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain SpoIIIAC PF06686.6 gi|304314507|ref|YP_003849654.1| - 1.9 8.3 4.5 3.3 7.5 3.1 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AC/AD protein family DUF1232 PF06803.7 gi|304314508|ref|YP_003849655.1| - 2.6e-11 42.7 1.9 4e-11 42.1 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) DUF310 PF03750.8 gi|304314510|ref|YP_003849657.1| - 0.11 12.7 0.2 0.17 12.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF310) DUF2791 PF10923.3 gi|304314511|ref|YP_003849658.1| - 3.4e-98 328.9 0.0 4e-98 328.7 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_22 PF13401.1 gi|304314511|ref|YP_003849658.1| - 1.4e-09 38.1 0.0 0.0015 18.6 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|304314511|ref|YP_003849658.1| - 9e-09 35.5 0.0 2.7e-08 34.0 0.0 1.8 2 1 0 2 2 2 1 AAA ATPase domain DAP3 PF10236.4 gi|304314511|ref|YP_003849658.1| - 0.0059 15.5 0.0 0.018 13.9 0.0 1.8 2 1 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_10 PF12846.2 gi|304314511|ref|YP_003849658.1| - 0.01 15.2 0.0 0.3 10.4 0.0 2.8 1 1 0 1 1 1 0 AAA-like domain KAP_NTPase PF07693.9 gi|304314511|ref|YP_003849658.1| - 0.011 14.7 0.2 0.018 14.0 0.1 1.5 1 1 0 1 1 1 0 KAP family P-loop domain AAA_18 PF13238.1 gi|304314511|ref|YP_003849658.1| - 0.026 14.8 0.4 0.087 13.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|304314511|ref|YP_003849658.1| - 0.063 14.0 1.5 1 10.2 0.1 3.0 1 1 1 2 2 2 0 AAA domain DEAD PF00270.24 gi|304314512|ref|YP_003849659.1| - 3e-34 117.9 0.0 3.5e-32 111.2 0.0 2.2 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|304314512|ref|YP_003849659.1| - 6.5e-17 61.1 0.0 3.9e-16 58.6 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|304314512|ref|YP_003849659.1| - 4.5e-07 29.8 0.0 9.9e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|304314512|ref|YP_003849659.1| - 0.067 13.1 0.0 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Helicase C-terminal domain DUF723 PF05265.8 gi|304314512|ref|YP_003849659.1| - 0.18 11.5 0.2 0.44 10.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF723) UPF0150 PF03681.10 gi|304314513|ref|YP_003849660.1| - 9.9e-10 37.8 0.0 2.8e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) MarR PF01047.17 gi|304314514|ref|YP_003849661.1| - 6.4e-18 64.2 0.0 9.8e-18 63.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|304314514|ref|YP_003849661.1| - 1.4e-12 47.0 0.6 1.6e-11 43.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|304314514|ref|YP_003849661.1| - 1.4e-11 44.5 0.2 8.6e-11 42.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|304314514|ref|YP_003849661.1| - 3.1e-05 23.5 0.3 8.7e-05 22.0 0.2 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|304314514|ref|YP_003849661.1| - 3.9e-05 22.9 0.0 6.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|304314514|ref|YP_003849661.1| - 3.9e-05 23.3 0.0 6.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|304314514|ref|YP_003849661.1| - 4.7e-05 22.9 0.0 7.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|304314514|ref|YP_003849661.1| - 0.00015 21.5 0.3 0.0047 16.6 0.0 2.4 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|304314514|ref|YP_003849661.1| - 0.0002 21.1 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Tnp_4 PF13613.1 gi|304314514|ref|YP_003849661.1| - 0.0031 16.9 0.2 0.36 10.3 0.0 2.6 2 1 1 3 3 3 1 Helix-turn-helix of DDE superfamily endonuclease DUF387 PF04079.11 gi|304314514|ref|YP_003849661.1| - 0.015 14.7 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) GntR PF00392.16 gi|304314514|ref|YP_003849661.1| - 0.031 13.7 0.1 0.1 12.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|304314514|ref|YP_003849661.1| - 0.031 14.2 0.0 0.053 13.5 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|304314514|ref|YP_003849661.1| - 0.04 13.8 0.2 0.087 12.7 0.0 1.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein DUF3116 PF11313.3 gi|304314514|ref|YP_003849661.1| - 0.055 13.0 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) TFIIE_alpha PF02002.12 gi|304314514|ref|YP_003849661.1| - 0.067 12.6 0.0 0.1 12.0 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit Glycos_trans_3N PF02885.12 gi|304314514|ref|YP_003849661.1| - 0.095 12.2 0.0 0.92 9.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain RP-C PF03428.8 gi|304314514|ref|YP_003849661.1| - 0.098 12.1 0.4 0.13 11.6 0.3 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain Replic_Relax PF13814.1 gi|304314514|ref|YP_003849661.1| - 0.11 12.2 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation MerR PF00376.18 gi|304314514|ref|YP_003849661.1| - 0.22 11.1 1.7 0.64 9.6 1.2 1.8 1 0 0 1 1 1 0 MerR family regulatory protein MatE PF01554.13 gi|304314515|ref|YP_003849662.1| - 1.4e-54 184.0 38.1 2.5e-30 105.2 7.3 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|304314515|ref|YP_003849662.1| - 2.6e-10 40.2 14.7 2.6e-10 40.2 10.2 5.4 3 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF1270 PF06900.6 gi|304314515|ref|YP_003849662.1| - 0.047 13.8 0.9 0.047 13.8 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) DUF3467 PF11950.3 gi|304314516|ref|YP_003849663.1| - 9e-10 38.4 0.0 1.1e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) TrmB PF01978.14 gi|304314517|ref|YP_003849664.1| - 1.2e-05 24.9 0.1 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|304314517|ref|YP_003849664.1| - 3.4e-05 23.5 0.1 9.6e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|304314517|ref|YP_003849664.1| - 5.4e-05 22.7 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|304314517|ref|YP_003849664.1| - 0.00011 21.7 0.0 0.00035 20.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|304314517|ref|YP_003849664.1| - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|304314517|ref|YP_003849664.1| - 0.0022 17.4 0.0 0.0037 16.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2250 PF10007.4 gi|304314517|ref|YP_003849664.1| - 0.0045 16.8 0.2 0.015 15.1 0.1 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|304314517|ref|YP_003849664.1| - 0.0055 16.0 0.7 0.022 14.1 0.1 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|304314517|ref|YP_003849664.1| - 0.0062 16.4 0.3 0.16 11.8 0.1 2.2 1 1 1 2 2 2 1 Ferric uptake regulator family HTH_29 PF13551.1 gi|304314517|ref|YP_003849664.1| - 0.0074 16.4 0.0 0.0084 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.1 gi|304314517|ref|YP_003849664.1| - 0.0075 16.4 0.1 0.012 15.8 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|304314517|ref|YP_003849664.1| - 0.0094 15.6 0.0 0.073 12.7 0.0 2.2 2 0 0 2 2 2 1 MarR family DUF2666 PF10869.3 gi|304314517|ref|YP_003849664.1| - 0.011 15.7 0.6 0.017 15.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2666) HTH_IclR PF09339.5 gi|304314517|ref|YP_003849664.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Terminase_5 PF06056.7 gi|304314517|ref|YP_003849664.1| - 0.02 14.4 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|304314517|ref|YP_003849664.1| - 0.041 13.5 0.0 0.088 12.4 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|304314517|ref|YP_003849664.1| - 0.057 12.8 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|304314517|ref|YP_003849664.1| - 0.068 12.4 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF1533 PF07550.6 gi|304314517|ref|YP_003849664.1| - 0.077 13.0 0.1 0.42 10.6 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) DUF4423 PF14394.1 gi|304314517|ref|YP_003849664.1| - 0.099 12.1 0.1 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Cdc6_C PF09079.6 gi|304314517|ref|YP_003849664.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal TauE PF01925.14 gi|304314519|ref|YP_003849666.1| - 8e-05 22.2 21.1 9.7e-05 21.9 14.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MoeZ_MoeB PF05237.8 gi|304314519|ref|YP_003849666.1| - 4.2 7.0 5.8 0.53 9.9 0.4 2.0 2 0 0 2 2 2 0 MoeZ/MoeB domain SUR7 PF06687.7 gi|304314519|ref|YP_003849666.1| - 6 6.3 14.0 5 6.6 6.8 2.4 1 1 1 2 2 2 0 SUR7/PalI family SBF PF01758.11 gi|304314520|ref|YP_003849667.1| - 2e-38 131.7 12.7 2e-38 131.7 8.8 2.2 2 0 0 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|304314520|ref|YP_003849667.1| - 9.6e-12 44.6 25.4 1.2e-11 44.2 17.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) C5-epim_C PF06662.8 gi|304314521|ref|YP_003849668.1| - 1.7e-41 141.6 7.1 1.7e-41 141.6 4.9 1.7 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glycos_transf_2 PF00535.21 gi|304314522|ref|YP_003849669.1| - 9.4e-28 97.0 0.0 1.4e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304314522|ref|YP_003849669.1| - 9.6e-13 48.4 0.1 1.1e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|304314522|ref|YP_003849669.1| - 0.00033 19.8 0.0 0.00047 19.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|304314522|ref|YP_003849669.1| - 0.0017 17.6 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|304314522|ref|YP_003849669.1| - 0.026 14.8 0.0 0.06 13.6 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 Bmp PF02608.9 gi|304314522|ref|YP_003849669.1| - 0.09 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Basic membrane protein Glycos_transf_2 PF00535.21 gi|304314523|ref|YP_003849670.1| - 3.9e-31 108.0 0.0 7.2e-31 107.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304314523|ref|YP_003849670.1| - 1.7e-20 73.8 0.0 2.4e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|304314523|ref|YP_003849670.1| - 9.1e-13 47.9 0.0 3.7e-12 45.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.9 gi|304314523|ref|YP_003849670.1| - 1.9e-08 33.6 0.0 3.8e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|304314523|ref|YP_003849670.1| - 6.9e-08 31.9 0.0 1.1e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|304314523|ref|YP_003849670.1| - 7.7e-06 25.7 0.0 1.6e-05 24.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|304314523|ref|YP_003849670.1| - 7.3e-05 23.0 0.0 0.00013 22.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|304314523|ref|YP_003849670.1| - 0.1 11.8 0.1 6.8 5.8 0.0 2.8 2 1 1 3 3 3 0 Glycosyltransferase like family Glyco_trans_1_4 PF13692.1 gi|304314524|ref|YP_003849671.1| - 2.7e-18 66.4 0.0 4.4e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314524|ref|YP_003849671.1| - 5.6e-10 39.3 0.0 1.1e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|304314524|ref|YP_003849671.1| - 1.8e-08 34.0 0.1 3.1e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|304314524|ref|YP_003849671.1| - 4.8e-07 29.6 0.1 1.1e-06 28.5 0.0 1.6 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|304314524|ref|YP_003849671.1| - 0.001 19.2 0.0 0.0014 18.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|304314525|ref|YP_003849672.1| - 2.3e-18 66.1 0.8 4.3e-18 65.3 0.6 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|304314525|ref|YP_003849672.1| - 3.4e-12 46.6 0.0 5.1e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314525|ref|YP_003849672.1| - 2.9e-08 33.8 0.0 6.8e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|304314525|ref|YP_003849672.1| - 0.0011 18.6 0.1 0.049 13.3 0.0 2.6 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_tran_WecB PF03808.8 gi|304314525|ref|YP_003849672.1| - 0.023 14.1 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family DUF3473 PF11959.3 gi|304314525|ref|YP_003849672.1| - 0.09 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) Glyco_trans_4_2 PF13477.1 gi|304314525|ref|YP_003849672.1| - 0.56 10.0 7.3 1 9.1 2.4 2.7 2 1 0 2 2 2 0 Glycosyl transferase 4-like Methyltransf_11 PF08241.7 gi|304314526|ref|YP_003849673.1| - 2.7e-19 69.4 0.0 4e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314526|ref|YP_003849673.1| - 2e-17 63.1 0.0 3.2e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|304314526|ref|YP_003849673.1| - 3e-15 56.4 0.0 1.3e-14 54.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|304314526|ref|YP_003849673.1| - 8e-14 51.6 0.0 1e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304314526|ref|YP_003849673.1| - 1.6e-12 47.0 0.0 2.4e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|304314526|ref|YP_003849673.1| - 5e-11 43.1 0.0 8.1e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314526|ref|YP_003849673.1| - 9.7e-11 42.0 0.0 1.7e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|304314526|ref|YP_003849673.1| - 1.4e-06 27.2 0.0 2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|304314526|ref|YP_003849673.1| - 1.8e-05 24.4 0.0 8.6e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|304314526|ref|YP_003849673.1| - 3.9e-05 23.6 0.0 8.4e-05 22.5 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|304314526|ref|YP_003849673.1| - 7.8e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.6 gi|304314526|ref|YP_003849673.1| - 0.00031 20.2 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|304314526|ref|YP_003849673.1| - 0.0021 17.2 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|304314526|ref|YP_003849673.1| - 0.0022 17.1 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_29 PF03141.11 gi|304314526|ref|YP_003849673.1| - 0.0052 15.1 0.0 0.0065 14.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase FmrO PF07091.6 gi|304314526|ref|YP_003849673.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_N4_Mtase PF01555.13 gi|304314526|ref|YP_003849673.1| - 0.014 14.9 0.2 0.66 9.4 0.0 2.2 2 0 0 2 2 2 0 DNA methylase PhnA_Zn_Ribbon PF08274.7 gi|304314526|ref|YP_003849673.1| - 0.024 14.4 1.9 5.5 6.8 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Methyltransf_15 PF09445.5 gi|304314526|ref|YP_003849673.1| - 0.026 14.0 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase zinc-ribbons_6 PF07191.7 gi|304314526|ref|YP_003849673.1| - 0.032 13.9 1.2 0.071 12.9 0.8 1.5 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|304314526|ref|YP_003849673.1| - 0.038 13.6 3.1 0.071 12.7 2.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MTS PF05175.9 gi|304314526|ref|YP_003849673.1| - 0.097 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain HypA PF01155.14 gi|304314526|ref|YP_003849673.1| - 0.14 11.8 0.7 0.27 10.9 0.5 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|304314526|ref|YP_003849673.1| - 0.26 10.9 2.8 0.72 9.5 1.9 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Thymidylate_kin PF02223.12 gi|304314527|ref|YP_003849674.1| - 4.5e-15 55.5 0.2 3.6e-08 33.0 0.1 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_18 PF13238.1 gi|304314527|ref|YP_003849674.1| - 2.9e-06 27.6 0.7 0.00047 20.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|304314527|ref|YP_003849674.1| - 0.00015 22.5 0.2 0.00083 20.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|304314527|ref|YP_003849674.1| - 0.0027 18.0 0.0 0.0078 16.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.1 gi|304314527|ref|YP_003849674.1| - 0.0037 17.1 3.0 0.044 13.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|304314527|ref|YP_003849674.1| - 0.0039 17.3 0.0 0.03 14.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|304314527|ref|YP_003849674.1| - 0.0045 17.0 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.15 gi|304314527|ref|YP_003849674.1| - 0.0084 15.7 0.0 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_5 PF07728.9 gi|304314527|ref|YP_003849674.1| - 0.0098 15.6 0.0 0.027 14.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|304314527|ref|YP_003849674.1| - 0.014 15.5 0.2 3.4 7.8 0.0 2.3 2 1 0 2 2 2 0 RNA helicase UPF0079 PF02367.12 gi|304314527|ref|YP_003849674.1| - 0.016 14.8 0.1 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|304314527|ref|YP_003849674.1| - 0.034 14.1 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|304314527|ref|YP_003849674.1| - 0.04 12.4 0.1 0.059 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|304314527|ref|YP_003849674.1| - 0.04 12.7 0.3 1.3 7.7 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain KTI12 PF08433.5 gi|304314527|ref|YP_003849674.1| - 0.045 12.9 0.0 0.14 11.3 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|304314527|ref|YP_003849674.1| - 0.047 12.7 0.1 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.1 gi|304314527|ref|YP_003849674.1| - 0.08 12.8 0.0 0.14 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|304314527|ref|YP_003849674.1| - 0.14 12.3 0.0 0.44 10.7 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Phosphodiest PF01663.17 gi|304314528|ref|YP_003849675.1| - 6.9e-25 88.1 0.0 7.6e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.17 gi|304314529|ref|YP_003849676.1| - 2.6e-05 23.7 0.0 3.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|304314529|ref|YP_003849676.1| - 0.11 11.6 0.1 4 6.5 0.0 2.1 2 0 0 2 2 2 0 Sulfatase Glycos_transf_1 PF00534.15 gi|304314530|ref|YP_003849677.1| - 9.7e-39 132.5 1.2 3e-38 130.9 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|304314530|ref|YP_003849677.1| - 8e-22 77.8 0.0 1.4e-21 77.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314530|ref|YP_003849677.1| - 1.6e-09 37.8 0.0 3e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2206 PF09971.4 gi|304314531|ref|YP_003849678.1| - 1.2e-75 254.6 24.2 1.2e-75 254.6 16.8 3.1 2 1 0 2 2 2 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|304314531|ref|YP_003849678.1| - 8.2e-46 156.4 27.0 8.2e-46 156.4 18.7 3.1 2 1 1 3 3 3 1 Protein of unknown function (DUF1616) Glycos_transf_1 PF00534.15 gi|304314532|ref|YP_003849679.1| - 5.8e-29 100.7 5.8 6e-29 100.6 0.8 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|304314532|ref|YP_003849679.1| - 1.8e-13 50.7 0.0 5.6e-13 49.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|304314532|ref|YP_003849679.1| - 2.5e-06 27.6 0.0 4.9e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|304314532|ref|YP_003849679.1| - 7e-06 25.9 3.6 7e-06 25.9 2.5 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|304314532|ref|YP_003849679.1| - 4.2e-05 23.3 0.2 7.4e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Flavodoxin_3 PF12641.2 gi|304314532|ref|YP_003849679.1| - 0.00013 21.3 0.1 0.00045 19.6 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin domain DUF845 PF05820.6 gi|304314532|ref|YP_003849679.1| - 3.2 7.5 11.6 0.85 9.3 3.2 2.4 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF845) Polysacc_synt PF01943.12 gi|304314533|ref|YP_003849680.1| - 2.2e-68 230.4 59.1 2.5e-65 220.4 23.1 2.0 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|304314533|ref|YP_003849680.1| - 3.6e-14 52.8 18.2 3.6e-14 52.8 12.6 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|304314533|ref|YP_003849680.1| - 6.1e-06 26.1 8.7 6.1e-06 26.1 6.0 4.6 5 1 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain RNA_pol_A_CTD PF03118.10 gi|304314536|ref|YP_003849683.1| - 0.059 12.7 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Herpes_U59 PF04529.7 gi|304314536|ref|YP_003849683.1| - 0.092 11.5 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus U59 protein Glycos_transf_2 PF00535.21 gi|304314537|ref|YP_003849684.1| - 2.3e-28 99.0 0.0 1.6e-27 96.2 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304314537|ref|YP_003849684.1| - 3.9e-12 46.4 0.0 2.5e-11 43.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|304314537|ref|YP_003849684.1| - 1.5e-07 31.3 0.1 6.1e-07 29.3 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|304314537|ref|YP_003849684.1| - 0.0049 17.1 0.0 0.016 15.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|304314537|ref|YP_003849684.1| - 0.04 13.1 0.0 4.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|304314537|ref|YP_003849684.1| - 0.14 11.3 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 GLF PF03275.8 gi|304314538|ref|YP_003849685.1| - 1.3e-05 24.7 0.5 1.5e-05 24.5 0.4 1.1 1 0 0 1 1 1 1 UDP-galactopyranose mutase UPF0104 PF03706.8 gi|304314539|ref|YP_003849686.1| - 9e-15 54.7 14.9 1e-14 54.5 10.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF1282 PF06930.7 gi|304314539|ref|YP_003849686.1| - 1.5 8.4 8.3 1.9 8.1 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) Polysacc_synt PF01943.12 gi|304314540|ref|YP_003849687.1| - 7.6e-57 192.6 36.0 7.6e-57 192.6 25.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|304314540|ref|YP_003849687.1| - 1.8e-17 63.5 13.1 1.8e-17 63.5 9.1 4.5 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|304314540|ref|YP_003849687.1| - 9.4e-14 51.4 37.3 9.4e-14 51.4 25.8 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|304314540|ref|YP_003849687.1| - 0.042 12.2 45.5 0.0038 15.6 28.3 1.6 1 1 0 1 1 1 0 MviN-like protein Use1 PF09753.4 gi|304314540|ref|YP_003849687.1| - 1.5 8.1 5.1 8 5.8 0.2 2.2 2 0 0 2 2 2 0 Membrane fusion protein Use1 Epimerase PF01370.16 gi|304314541|ref|YP_003849688.1| - 5.5e-61 206.0 0.0 6.5e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|304314541|ref|YP_003849688.1| - 2.5e-22 78.8 0.0 3.4e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|304314541|ref|YP_003849688.1| - 5e-15 55.1 0.0 3.2e-14 52.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|304314541|ref|YP_003849688.1| - 9.8e-13 47.6 0.0 1.6e-12 46.9 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|304314541|ref|YP_003849688.1| - 2.2e-11 43.1 0.1 3.3e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|304314541|ref|YP_003849688.1| - 1.1e-08 35.3 0.0 1.3e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|304314541|ref|YP_003849688.1| - 0.0049 16.7 0.3 0.016 15.1 0.2 1.9 1 1 0 1 1 1 1 short chain dehydrogenase Ldh_1_N PF00056.18 gi|304314541|ref|YP_003849688.1| - 0.15 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF1616 PF07760.6 gi|304314542|ref|YP_003849689.1| - 1.8e-61 207.8 12.2 1.7e-59 201.3 2.2 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF1616) Pyocin_S PF06958.7 gi|304314544|ref|YP_003849691.1| - 0.039 14.3 0.2 0.089 13.1 0.2 1.7 1 1 0 1 1 1 0 S-type Pyocin DUF4118 PF13493.1 gi|304314545|ref|YP_003849692.1| - 0.00068 19.8 9.6 0.0072 16.5 1.6 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4118) YesK PF14150.1 gi|304314545|ref|YP_003849692.1| - 0.064 13.3 2.6 0.11 12.5 1.8 1.5 1 0 0 1 1 1 0 YesK-like protein FeoB_C PF07664.7 gi|304314545|ref|YP_003849692.1| - 0.088 12.2 2.4 5.7 6.4 0.1 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus DUF2474 PF10617.4 gi|304314545|ref|YP_003849692.1| - 0.21 11.2 2.3 12 5.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) Ammonium_transp PF00909.16 gi|304314545|ref|YP_003849692.1| - 0.74 8.2 4.6 1.2 7.4 1.4 1.9 2 0 0 2 2 2 0 Ammonium Transporter Family FtsX PF02687.16 gi|304314545|ref|YP_003849692.1| - 1.3 8.8 7.4 3.7 7.3 3.3 2.0 2 0 0 2 2 2 0 FtsX-like permease family DUF2109 PF09882.4 gi|304314547|ref|YP_003849694.1| - 8.6e-34 115.3 4.2 9.6e-34 115.1 2.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) NicO PF03824.11 gi|304314547|ref|YP_003849694.1| - 0.13 11.5 5.3 0.14 11.4 3.7 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein DUF4040 PF13244.1 gi|304314547|ref|YP_003849694.1| - 0.49 10.4 5.3 0.14 12.1 0.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF2108 PF09881.4 gi|304314548|ref|YP_003849695.1| - 5.8e-27 93.3 6.4 6.7e-27 93.1 4.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) MrpF_PhaF PF04066.8 gi|304314548|ref|YP_003849695.1| - 0.074 13.3 9.0 0.11 12.7 1.8 2.3 1 1 1 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF4040 PF13244.1 gi|304314548|ref|YP_003849695.1| - 0.19 11.7 6.5 0.27 11.2 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4040) PhaG_MnhG_YufB PF03334.9 gi|304314548|ref|YP_003849695.1| - 1.2 9.2 5.5 2 8.5 3.8 1.5 1 1 0 1 1 1 0 Na+/H+ antiporter subunit DUF2107 PF09880.4 gi|304314549|ref|YP_003849696.1| - 9.6e-37 124.7 6.3 1.1e-36 124.5 4.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) DUF2755 PF10954.3 gi|304314549|ref|YP_003849696.1| - 0.028 14.1 0.6 0.034 13.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2755) YrhK PF14145.1 gi|304314549|ref|YP_003849696.1| - 0.37 10.4 3.7 6 6.6 0.4 2.2 2 0 0 2 2 2 0 YrhK-like protein DUF2106 PF09879.4 gi|304314550|ref|YP_003849697.1| - 3.3e-75 250.5 0.1 3.7e-75 250.4 0.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2105 PF09878.4 gi|304314551|ref|YP_003849698.1| - 8.4e-86 286.8 13.5 9.8e-86 286.6 9.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) Oxidored_q2 PF00420.19 gi|304314551|ref|YP_003849698.1| - 0.43 10.2 7.9 1.6 8.3 5.5 2.1 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NADHdeh_related PF10125.4 gi|304314552|ref|YP_003849699.1| - 2.2e-99 331.0 14.2 2.5e-99 330.8 9.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1 PF00361.15 gi|304314552|ref|YP_003849699.1| - 2e-06 27.3 9.2 4.1e-06 26.2 4.2 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains PRA1 PF03208.14 gi|304314552|ref|YP_003849699.1| - 0.012 14.9 1.6 0.012 14.9 1.1 2.2 2 1 0 2 2 2 0 PRA1 family protein DUF3667 PF12412.3 gi|304314552|ref|YP_003849699.1| - 0.038 13.2 1.1 0.098 11.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3667) DUF4175 PF13779.1 gi|304314553|ref|YP_003849700.1| - 0.02 12.6 0.1 0.022 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Tetraspannin PF00335.15 gi|304314553|ref|YP_003849700.1| - 0.053 12.7 0.0 0.061 12.5 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF454 PF04304.8 gi|304314553|ref|YP_003849700.1| - 0.57 10.2 5.4 0.75 9.8 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF454) NADHdh PF00146.16 gi|304314554|ref|YP_003849701.1| - 9.3e-18 64.3 14.6 1.2e-17 64.0 10.1 1.1 1 0 0 1 1 1 1 NADH dehydrogenase DUF2569 PF10754.4 gi|304314554|ref|YP_003849701.1| - 2.8 8.1 15.2 1.9 8.6 6.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2569) FA_desaturase PF00487.19 gi|304314554|ref|YP_003849701.1| - 3.3 7.0 14.3 3.4 7.0 4.0 2.3 1 1 0 2 2 2 0 Fatty acid desaturase Colicin PF01024.14 gi|304314554|ref|YP_003849701.1| - 5.1 6.6 6.8 0.23 10.9 0.7 1.7 2 0 0 2 2 2 0 Colicin pore forming domain EII-GUT PF03608.8 gi|304314555|ref|YP_003849702.1| - 0.028 14.2 3.4 0.032 14.0 2.4 1.1 1 0 0 1 1 1 0 PTS system enzyme II sorbitol-specific factor YibE_F PF07907.6 gi|304314555|ref|YP_003849702.1| - 0.058 12.5 7.6 0.071 12.2 5.2 1.1 1 0 0 1 1 1 0 YibE/F-like protein Bax1-I PF01027.15 gi|304314555|ref|YP_003849702.1| - 0.28 10.7 7.8 0.38 10.3 5.4 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Caps_synth_CapC PF14102.1 gi|304314555|ref|YP_003849702.1| - 0.31 11.1 8.1 0.46 10.6 5.6 1.3 1 1 0 1 1 1 0 Capsule biosynthesis CapC EmrE PF13536.1 gi|304314555|ref|YP_003849702.1| - 0.85 9.8 8.7 0.066 13.4 1.0 2.0 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Peptidase_U4 PF03419.8 gi|304314555|ref|YP_003849702.1| - 1.3 8.0 4.9 1.4 7.8 3.4 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF975 PF06161.6 gi|304314555|ref|YP_003849702.1| - 1.5 8.4 6.9 1.7 8.3 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF975) Yip1 PF04893.12 gi|304314555|ref|YP_003849702.1| - 1.7 8.1 9.4 3.1 7.2 6.5 1.4 1 1 0 1 1 1 0 Yip1 domain DUF4149 PF13664.1 gi|304314555|ref|YP_003849702.1| - 4.6 7.3 8.4 17 5.5 5.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) DUF2104 PF09877.4 gi|304314556|ref|YP_003849703.1| - 5.4e-39 132.1 5.1 5.9e-39 132.0 3.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) Tmemb_14 PF03647.8 gi|304314556|ref|YP_003849703.1| - 0.05 14.0 0.7 0.087 13.2 0.5 1.6 1 1 0 1 1 1 0 Transmembrane proteins 14C DUF1129 PF06570.6 gi|304314556|ref|YP_003849703.1| - 0.74 9.0 2.7 0.47 9.7 1.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3040 PF11239.3 gi|304314556|ref|YP_003849703.1| - 2.4 8.2 5.9 0.75 9.8 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF1959 PF09218.5 gi|304314557|ref|YP_003849704.1| - 9.5e-47 157.5 0.6 1.1e-46 157.4 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Glyco_hydro_47 PF01532.15 gi|304314557|ref|YP_003849704.1| - 0.068 11.8 0.0 0.086 11.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 47 EF-hand_8 PF13833.1 gi|304314557|ref|YP_003849704.1| - 0.32 10.6 1.8 0.45 10.1 0.3 2.1 2 1 0 2 2 2 0 EF-hand domain pair Oxidored_q6 PF01058.17 gi|304314558|ref|YP_003849705.1| - 5.8e-27 93.8 0.0 6.9e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|304314559|ref|YP_003849706.1| - 1.8e-30 105.9 0.4 5.4e-27 94.4 0.2 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|304314559|ref|YP_003849706.1| - 1e-13 50.9 2.4 9.1e-11 41.2 0.0 2.8 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|304314560|ref|YP_003849707.1| - 2e-37 125.3 59.1 2.9e-08 32.9 1.3 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314560|ref|YP_003849707.1| - 1.4e-33 113.3 55.2 1.5e-06 27.7 1.2 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314560|ref|YP_003849707.1| - 1.6e-30 104.6 45.2 1.5e-11 43.8 7.6 3.5 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314560|ref|YP_003849707.1| - 2.1e-28 98.4 47.8 3.7e-10 40.0 7.5 3.5 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314560|ref|YP_003849707.1| - 7.2e-28 94.8 55.9 3.3e-05 23.5 2.5 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314560|ref|YP_003849707.1| - 8.6e-24 83.3 37.2 1.6e-08 34.4 2.9 4.7 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314560|ref|YP_003849707.1| - 3.8e-23 81.5 45.8 3.5e-08 33.5 7.4 4.4 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314560|ref|YP_003849707.1| - 1.5e-21 75.9 46.7 2e-08 33.9 7.0 4.4 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314560|ref|YP_003849707.1| - 6.9e-18 65.1 43.9 0.00027 21.5 1.1 6.3 5 1 0 5 5 5 5 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314560|ref|YP_003849707.1| - 4.2e-17 60.9 58.6 0.0014 18.7 1.0 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314560|ref|YP_003849707.1| - 7.3e-16 58.2 47.0 0.001 19.3 0.1 6.0 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314560|ref|YP_003849707.1| - 2.3e-15 56.7 38.7 0.00054 20.3 0.1 6.3 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314560|ref|YP_003849707.1| - 5.9e-11 42.0 69.5 0.0099 16.3 3.2 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314560|ref|YP_003849707.1| - 1.8e-09 38.0 42.2 0.0079 16.7 0.6 6.4 5 1 1 6 6 6 5 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304314560|ref|YP_003849707.1| - 2.1e-09 37.1 29.2 2.6e-06 27.2 2.6 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314560|ref|YP_003849707.1| - 2.4e-07 31.0 47.8 0.048 14.0 0.3 6.3 5 1 0 5 5 5 4 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304314561|ref|YP_003849708.1| - 9.1e-53 173.8 99.7 1.2e-09 37.3 2.6 9.2 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314561|ref|YP_003849708.1| - 6.7e-42 141.6 123.3 6.4e-10 39.2 8.1 5.8 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314561|ref|YP_003849708.1| - 1.8e-37 126.8 76.8 2e-08 33.9 9.2 6.9 5 4 3 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314561|ref|YP_003849708.1| - 2.3e-35 118.9 96.5 2.4e-07 30.3 2.5 9.2 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314561|ref|YP_003849708.1| - 1.7e-32 111.0 79.6 1.1e-09 38.0 8.1 7.0 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314561|ref|YP_003849708.1| - 3.6e-31 107.2 81.8 8.1e-08 32.4 8.4 5.8 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314561|ref|YP_003849708.1| - 5.4e-31 104.6 91.5 1.6e-05 24.5 2.4 9.3 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304314561|ref|YP_003849708.1| - 2.4e-29 101.8 62.3 0.00019 22.0 8.4 8.9 7 2 2 9 9 9 9 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304314561|ref|YP_003849708.1| - 6.7e-26 90.0 67.5 2.2e-08 33.9 3.1 7.0 3 3 5 8 8 8 8 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314561|ref|YP_003849708.1| - 4e-21 73.4 93.2 0.0028 17.8 3.2 9.2 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314561|ref|YP_003849708.1| - 3.3e-17 62.5 68.5 0.01 16.1 0.3 8.8 6 2 3 9 9 9 9 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314561|ref|YP_003849708.1| - 4.4e-14 52.7 80.3 0.012 16.1 1.1 9.3 7 2 1 8 8 8 7 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|304314561|ref|YP_003849708.1| - 9.5e-14 51.5 86.7 0.0025 18.1 0.1 9.2 7 2 2 9 9 9 7 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314561|ref|YP_003849708.1| - 1.1e-13 50.6 115.4 0.056 14.0 4.7 9.3 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304314561|ref|YP_003849708.1| - 1.2e-12 47.5 43.6 0.00032 20.5 2.3 6.3 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314561|ref|YP_003849708.1| - 1e-06 28.9 86.7 0.25 11.7 3.5 9.4 8 1 0 8 8 8 6 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|304314562|ref|YP_003849709.1| - 7.4e-08 32.8 0.1 0.0015 18.8 0.0 2.9 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304314562|ref|YP_003849709.1| - 2e-07 31.3 0.0 4.6e-07 30.1 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Kdo_hydroxy PF11004.3 gi|304314562|ref|YP_003849709.1| - 0.15 11.0 0.0 3.6 6.4 0.0 2.2 1 1 1 2 2 2 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase FTR_C PF02741.10 gi|304314563|ref|YP_003849710.1| - 5.6e-57 191.7 0.0 8.8e-57 191.0 0.0 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|304314563|ref|YP_003849710.1| - 8.9e-48 161.6 0.0 1.2e-47 161.2 0.0 1.2 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase PfkB PF00294.19 gi|304314564|ref|YP_003849711.1| - 2e-47 161.8 0.0 2.4e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|304314564|ref|YP_003849711.1| - 0.15 11.2 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Fer4 PF00037.22 gi|304314565|ref|YP_003849712.1| - 3.6e-39 130.8 63.9 1.1e-08 34.3 3.8 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314565|ref|YP_003849712.1| - 6.9e-31 106.3 102.3 1.4e-11 44.5 7.2 4.5 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314565|ref|YP_003849712.1| - 6.8e-26 88.9 64.7 7.6e-08 31.9 3.4 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314565|ref|YP_003849712.1| - 1.6e-25 89.0 86.9 1.1e-08 35.2 9.1 4.2 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314565|ref|YP_003849712.1| - 7e-24 84.3 41.2 3.6e-05 24.4 0.2 6.1 6 0 0 6 6 6 6 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|304314565|ref|YP_003849712.1| - 2.9e-22 78.2 55.4 2.4e-08 33.7 7.4 5.0 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314565|ref|YP_003849712.1| - 4.1e-22 77.7 54.7 5e-09 35.8 8.8 4.3 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314565|ref|YP_003849712.1| - 1.8e-21 74.6 59.1 5.6e-06 25.9 2.9 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314565|ref|YP_003849712.1| - 2.4e-20 72.2 43.9 1.1e-07 31.7 5.1 4.5 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304314565|ref|YP_003849712.1| - 1.7e-13 50.7 47.3 1.8e-05 24.9 6.4 5.2 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314565|ref|YP_003849712.1| - 2.1e-12 46.3 64.5 0.00088 19.4 2.7 6.3 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|304314565|ref|YP_003849712.1| - 3.1e-11 43.5 57.6 0.0079 16.6 0.5 6.2 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314565|ref|YP_003849712.1| - 5.2e-07 29.7 77.5 0.00048 20.5 5.0 6.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314565|ref|YP_003849712.1| - 2e-06 28.2 58.8 0.00014 22.3 0.5 6.9 5 2 1 6 6 5 3 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304314565|ref|YP_003849712.1| - 3.8e-06 26.7 33.3 0.0023 17.8 3.9 3.4 2 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304314565|ref|YP_003849712.1| - 6e-06 26.5 61.8 0.018 15.4 2.8 6.8 6 1 1 7 7 7 4 4Fe-4S single cluster domain CBS PF00571.23 gi|304314566|ref|YP_003849713.1| - 1.1e-18 66.7 4.7 5.8e-10 38.7 0.1 2.6 2 0 0 2 2 2 2 CBS domain Cache_3 PF14827.1 gi|304314566|ref|YP_003849713.1| - 0.003 17.4 0.2 1.2 8.9 0.0 2.5 2 0 0 2 2 2 2 Sensory domain of two-component sensor kinase PRC PF05239.11 gi|304314566|ref|YP_003849713.1| - 0.0044 16.8 0.6 2.5 8.0 0.0 2.4 2 0 0 2 2 2 2 PRC-barrel domain Ribosomal_L9_C PF03948.9 gi|304314566|ref|YP_003849713.1| - 0.085 12.9 0.0 13 5.9 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain DUF3659 PF12396.3 gi|304314566|ref|YP_003849713.1| - 0.14 11.8 0.5 21 4.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) GST_N_3 PF13417.1 gi|304314566|ref|YP_003849713.1| - 0.14 12.4 0.1 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain E1-E2_ATPase PF00122.15 gi|304314567|ref|YP_003849714.1| - 5.3e-51 172.8 1.0 9e-51 172.1 0.3 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|304314567|ref|YP_003849714.1| - 1.8e-40 139.6 1.4 3.1e-39 135.6 0.3 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304314567|ref|YP_003849714.1| - 5.3e-15 56.1 0.0 2.2e-14 54.0 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304314567|ref|YP_003849714.1| - 0.017 14.6 3.7 0.24 10.9 0.6 2.5 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase OmdA PF13376.1 gi|304314567|ref|YP_003849714.1| - 0.13 11.9 0.6 0.33 10.6 0.4 1.6 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF4270 PF14092.1 gi|304314567|ref|YP_003849714.1| - 0.14 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4270) rve_3 PF13683.1 gi|304314567|ref|YP_003849714.1| - 0.22 11.0 0.3 0.54 9.8 0.1 1.7 2 0 0 2 2 2 0 Integrase core domain PMBR PF09373.5 gi|304314568|ref|YP_003849715.1| - 7.5e-54 177.2 4.6 3.3e-09 36.2 0.0 7.4 8 0 0 8 8 8 6 Pseudomurein-binding repeat Transglut_core PF01841.14 gi|304314568|ref|YP_003849715.1| - 6.9e-25 87.4 1.4 1.3e-24 86.5 1.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.3 gi|304314568|ref|YP_003849715.1| - 5e-09 35.7 0.4 1e-08 34.7 0.3 1.5 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.7 gi|304314568|ref|YP_003849715.1| - 0.00012 21.3 0.0 0.0074 15.5 0.0 2.8 3 1 0 3 3 3 1 Transglutaminase-like domain Transglut_core3 PF13471.1 gi|304314568|ref|YP_003849715.1| - 0.008 15.9 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily Pyridox_oxidase PF01243.15 gi|304314569|ref|YP_003849716.1| - 1.9e-14 53.4 0.0 2.5e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|304314569|ref|YP_003849716.1| - 0.0078 15.7 0.0 0.0085 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Asn_synthase PF00733.16 gi|304314570|ref|YP_003849717.1| - 2.1e-58 197.8 0.2 3e-58 197.2 0.2 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|304314570|ref|YP_003849717.1| - 1.1e-13 51.0 0.1 4.5e-12 45.8 0.0 2.6 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|304314570|ref|YP_003849717.1| - 5.5e-12 45.7 0.1 4.8e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.12 gi|304314570|ref|YP_003849717.1| - 8.5e-05 21.5 0.1 0.001 17.9 0.0 2.1 2 0 0 2 2 2 1 NAD synthase GATase_2 PF00310.16 gi|304314570|ref|YP_003849717.1| - 0.00076 18.2 0.0 0.014 14.1 0.0 2.3 3 0 0 3 3 3 1 Glutamine amidotransferases class-II QueC PF06508.8 gi|304314570|ref|YP_003849717.1| - 0.026 13.8 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Glu-tRNAGln PF02686.10 gi|304314571|ref|YP_003849718.1| - 7.3e-06 25.7 1.0 1.1e-05 25.1 0.7 1.4 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF4264 PF14084.1 gi|304314571|ref|YP_003849718.1| - 0.014 14.7 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) DUF3659 PF12396.3 gi|304314571|ref|YP_003849718.1| - 0.042 13.5 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) RRP7 PF12923.2 gi|304314571|ref|YP_003849718.1| - 0.059 13.3 0.1 0.073 13.1 0.1 1.3 1 1 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) zf-C4H2 PF10146.4 gi|304314571|ref|YP_003849718.1| - 0.13 12.2 0.8 0.15 12.0 0.5 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein ACT PF01842.20 gi|304314572|ref|YP_003849719.1| - 4.1e-08 32.5 1.8 3.4e-05 23.1 0.0 3.0 1 1 2 3 3 3 2 ACT domain NIL PF09383.5 gi|304314572|ref|YP_003849719.1| - 0.013 15.0 0.8 0.39 10.3 0.0 3.0 2 2 1 3 3 3 0 NIL domain ACT_4 PF13291.1 gi|304314572|ref|YP_003849719.1| - 0.027 14.8 0.0 0.18 12.1 0.0 2.2 1 1 2 3 3 3 0 ACT domain Homoserine_dh PF00742.14 gi|304314573|ref|YP_003849720.1| - 1.8e-54 184.1 0.2 2.4e-54 183.7 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|304314573|ref|YP_003849720.1| - 8.5e-08 32.6 0.0 1.9e-07 31.4 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|304314573|ref|YP_003849720.1| - 0.0002 21.0 0.0 0.00047 19.8 0.0 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Metalloenzyme PF01676.13 gi|304314574|ref|YP_003849721.1| - 1.1e-55 188.7 0.0 1.3e-55 188.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PhosphMutase PF10143.4 gi|304314574|ref|YP_003849721.1| - 2.2e-54 183.6 0.0 3.3e-54 183.1 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Phosphodiest PF01663.17 gi|304314574|ref|YP_003849721.1| - 0.028 13.7 0.1 0.071 12.4 0.1 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase UDPG_MGDP_dh_N PF03721.9 gi|304314574|ref|YP_003849721.1| - 0.17 11.2 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTP_synth_N PF06418.9 gi|304314575|ref|YP_003849722.1| - 6.2e-130 432.2 0.1 8e-130 431.8 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|304314575|ref|YP_003849722.1| - 1.5e-52 177.8 0.0 2.3e-52 177.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|304314575|ref|YP_003849722.1| - 8.6e-13 48.2 0.0 2.7e-12 46.6 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|304314575|ref|YP_003849722.1| - 0.00044 19.7 0.0 0.0007 19.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|304314575|ref|YP_003849722.1| - 0.02 14.5 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|304314575|ref|YP_003849722.1| - 0.025 14.2 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Arc_PepC PF06819.6 gi|304314578|ref|YP_003849725.1| - 1.3e-33 115.1 0.0 3.2e-33 113.9 0.0 1.7 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.13 gi|304314578|ref|YP_003849725.1| - 7.3e-14 51.8 10.1 7.3e-14 51.8 7.0 3.3 2 1 1 3 3 3 1 Type IV leader peptidase family Class_IIIsignal PF04021.7 gi|304314579|ref|YP_003849726.1| - 5.7e-08 32.2 2.7 1.2e-07 31.1 1.9 1.6 1 0 0 1 1 1 1 Class III signal peptide Tad PF13400.1 gi|304314579|ref|YP_003849726.1| - 0.39 10.8 9.8 2.9 7.9 1.3 2.3 1 1 1 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF2101 PF09874.4 gi|304314580|ref|YP_003849727.1| - 2e-74 249.5 8.6 2.6e-74 249.2 5.9 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2244 PF10003.4 gi|304314580|ref|YP_003849727.1| - 1.1 8.6 20.2 0.11 11.8 3.6 2.9 3 1 0 3 3 3 0 Integral membrane protein (DUF2244) PV-1 PF06637.6 gi|304314580|ref|YP_003849727.1| - 3.5 6.1 4.7 5.5 5.4 3.3 1.3 1 0 0 1 1 1 0 PV-1 protein (PLVAP) Class_IIIsignal PF04021.7 gi|304314581|ref|YP_003849728.1| - 0.0074 15.9 8.1 0.019 14.6 5.6 1.7 1 1 0 1 1 1 1 Class III signal peptide SPC12 PF06645.8 gi|304314581|ref|YP_003849728.1| - 0.018 14.8 0.2 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2808 PF10989.3 gi|304314581|ref|YP_003849728.1| - 0.021 14.4 0.1 0.028 14.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) DUF2897 PF11446.3 gi|304314581|ref|YP_003849728.1| - 2.5 7.9 4.6 4.1 7.3 3.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) TadE PF07811.7 gi|304314581|ref|YP_003849728.1| - 4.5 7.2 5.6 10 6.0 3.9 1.7 1 1 0 1 1 1 0 TadE-like protein Nucleo_LEF-12 PF06256.6 gi|304314585|ref|YP_003849732.1| - 0.14 11.9 0.2 0.54 10.0 0.1 1.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus LEF-12 protein MacB_PCD PF12704.2 gi|304314586|ref|YP_003849733.1| - 0.0063 16.1 0.9 0.0071 15.9 0.6 1.1 1 0 0 1 1 1 1 MacB-like periplasmic core domain YPEB PF14620.1 gi|304314586|ref|YP_003849733.1| - 0.1 11.6 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 YpeB sporulation DUF4131 PF13567.1 gi|304314587|ref|YP_003849734.1| - 0.017 14.5 0.2 0.038 13.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) FPN1 PF06963.7 gi|304314587|ref|YP_003849734.1| - 0.029 12.7 0.5 0.039 12.3 0.0 1.4 2 0 0 2 2 2 0 Ferroportin1 (FPN1) GNVR PF13807.1 gi|304314587|ref|YP_003849734.1| - 1.1 8.9 0.0 1.1 8.9 0.0 2.6 3 0 0 3 3 3 0 G-rich domain on putative tyrosine kinase ATP_bind_4 PF01902.12 gi|304314588|ref|YP_003849735.1| - 2.6e-99 331.0 0.1 2.9e-99 330.8 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|304314588|ref|YP_003849735.1| - 0.067 12.4 0.0 0.13 11.5 0.0 1.5 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC NIR_SIR_ferr PF03460.12 gi|304314588|ref|YP_003849735.1| - 0.11 12.1 0.1 0.56 9.8 0.0 2.1 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain RNA_binding PF01877.12 gi|304314589|ref|YP_003849736.1| - 8.8e-22 77.3 0.1 1.7e-21 76.4 0.1 1.4 1 1 0 1 1 1 1 RNA binding Aconitase_2_N PF06434.8 gi|304314589|ref|YP_003849736.1| - 0.085 12.2 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus AAA_18 PF13238.1 gi|304314590|ref|YP_003849737.1| - 3.2e-12 46.8 0.3 4.5e-12 46.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304314590|ref|YP_003849737.1| - 1.6e-11 45.0 0.1 1.9e-11 44.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|304314590|ref|YP_003849737.1| - 4.2e-05 23.4 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|304314590|ref|YP_003849737.1| - 0.00061 19.6 0.0 0.00093 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|304314590|ref|YP_003849737.1| - 0.0091 15.7 2.8 0.31 10.7 0.2 2.1 1 1 1 2 2 2 2 NTPase CoaE PF01121.15 gi|304314590|ref|YP_003849737.1| - 0.012 15.0 0.2 0.038 13.3 0.0 1.8 1 1 1 2 2 2 0 Dephospho-CoA kinase ATP_bind_2 PF03668.10 gi|304314590|ref|YP_003849737.1| - 0.036 13.1 1.2 0.043 12.8 0.3 1.5 2 0 0 2 2 2 0 P-loop ATPase protein family DUF137 PF02006.11 gi|304314591|ref|YP_003849738.1| - 7.6e-74 246.9 0.7 9.3e-74 246.6 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 UPF0060 PF02694.10 gi|304314592|ref|YP_003849739.1| - 0.015 15.2 0.1 0.016 15.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family TctB PF07331.6 gi|304314592|ref|YP_003849739.1| - 0.031 13.9 3.6 0.053 13.1 2.6 1.3 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1129 PF06570.6 gi|304314592|ref|YP_003849739.1| - 0.067 12.5 0.1 0.077 12.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4199 PF13858.1 gi|304314592|ref|YP_003849739.1| - 0.071 13.0 4.7 0.081 12.8 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Peptidase_M42 PF05343.9 gi|304314593|ref|YP_003849740.1| - 8.8e-110 366.0 1.4 1e-109 365.8 1.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|304314593|ref|YP_003849740.1| - 0.079 12.6 0.0 0.82 9.3 0.0 2.2 2 0 0 2 2 2 0 Peptidase family M28 Phage_AlpA PF05930.7 gi|304314594|ref|YP_003849741.1| - 0.043 13.5 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) KaiC PF06745.8 gi|304314595|ref|YP_003849742.1| - 8.6e-64 214.7 1.7 9.8e-64 214.5 1.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|304314595|ref|YP_003849742.1| - 1.1e-09 37.9 0.2 2.8e-08 33.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|304314595|ref|YP_003849742.1| - 1.1e-07 31.2 0.1 1.6e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|304314595|ref|YP_003849742.1| - 1e-06 28.3 0.3 7.8e-05 22.1 0.0 2.5 2 1 1 3 3 3 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|304314595|ref|YP_003849742.1| - 0.00013 21.0 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|304314595|ref|YP_003849742.1| - 0.00035 20.6 0.1 0.00059 19.8 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|304314595|ref|YP_003849742.1| - 0.00053 19.4 0.6 0.0012 18.3 0.4 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|304314595|ref|YP_003849742.1| - 0.00069 19.7 0.4 0.003 17.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|304314595|ref|YP_003849742.1| - 0.0013 17.8 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.1 gi|304314595|ref|YP_003849742.1| - 0.0015 18.1 0.1 0.003 17.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|304314595|ref|YP_003849742.1| - 0.0043 16.3 0.9 0.019 14.1 0.1 2.2 3 0 0 3 3 3 1 PhoH-like protein GvpD PF07088.6 gi|304314595|ref|YP_003849742.1| - 0.0046 15.3 0.8 0.011 14.1 0.5 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein NTPase_1 PF03266.10 gi|304314595|ref|YP_003849742.1| - 0.0081 15.8 0.6 0.014 15.0 0.4 1.4 1 1 0 1 1 1 1 NTPase CobU PF02283.11 gi|304314595|ref|YP_003849742.1| - 0.0082 15.5 0.1 0.34 10.3 0.0 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase DnaB_C PF03796.10 gi|304314595|ref|YP_003849742.1| - 0.011 14.5 0.0 0.016 14.1 0.0 1.3 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_31 PF13614.1 gi|304314595|ref|YP_003849742.1| - 0.013 15.4 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|304314595|ref|YP_003849742.1| - 0.014 14.9 0.0 0.015 14.8 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|304314595|ref|YP_003849742.1| - 0.021 14.5 0.1 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|304314595|ref|YP_003849742.1| - 0.022 14.4 0.2 0.049 13.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ArsA_ATPase PF02374.10 gi|304314595|ref|YP_003849742.1| - 0.024 13.7 0.2 0.11 11.5 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase DEAD PF00270.24 gi|304314595|ref|YP_003849742.1| - 0.024 14.1 0.4 0.073 12.5 0.2 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|304314595|ref|YP_003849742.1| - 0.025 14.2 0.5 0.12 11.9 0.3 1.9 1 1 0 1 1 1 0 Archaeal ATPase Porphobil_deam PF01379.15 gi|304314595|ref|YP_003849742.1| - 0.035 13.0 0.0 0.066 12.1 0.0 1.3 1 1 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain AAA PF00004.24 gi|304314595|ref|YP_003849742.1| - 0.1 12.7 0.2 0.21 11.7 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|304314595|ref|YP_003849742.1| - 0.11 11.9 0.5 0.19 11.3 0.3 1.5 1 1 0 1 1 1 0 AAA domain Response_reg PF00072.19 gi|304314597|ref|YP_003849744.1| - 2.7e-23 82.0 0.1 5.2e-23 81.1 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|304314597|ref|YP_003849744.1| - 2.6e-15 56.1 0.0 4.8e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|304314597|ref|YP_003849744.1| - 4.8e-11 42.0 0.0 1.1e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|304314597|ref|YP_003849744.1| - 1.8e-09 37.6 0.0 3.1e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|304314597|ref|YP_003849744.1| - 2.5e-09 37.4 0.0 4.3e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|304314597|ref|YP_003849744.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.7 1 1 0 1 1 1 0 PAS fold UvrC_HhH_N PF08459.6 gi|304314598|ref|YP_003849745.1| - 2.2e-46 157.2 0.0 3.2e-45 153.4 0.0 2.2 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|304314598|ref|YP_003849745.1| - 1.2e-11 44.7 1.6 2.1e-11 44.0 0.2 2.1 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.14 gi|304314598|ref|YP_003849745.1| - 4.4e-11 41.9 5.7 1e-10 40.7 4.0 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_2 PF12826.2 gi|304314598|ref|YP_003849745.1| - 3e-10 39.8 0.0 1.1e-09 38.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|304314598|ref|YP_003849745.1| - 2.3e-08 34.0 0.0 6.1e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|304314598|ref|YP_003849745.1| - 0.0034 16.9 0.0 1.9 8.3 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|304314598|ref|YP_003849745.1| - 0.016 15.4 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold UvrB PF12344.3 gi|304314599|ref|YP_003849746.1| - 5.9e-17 60.9 1.7 1.3e-16 59.8 1.2 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|304314599|ref|YP_003849746.1| - 2.1e-15 56.3 0.0 4.8e-15 55.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|304314599|ref|YP_003849746.1| - 3.5e-12 45.4 3.1 3.5e-12 45.4 2.2 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.10 gi|304314599|ref|YP_003849746.1| - 1.1e-11 44.8 0.1 9.4e-11 41.8 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|304314599|ref|YP_003849746.1| - 4.4e-05 23.0 0.0 0.00062 19.3 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|304314599|ref|YP_003849746.1| - 0.00085 19.0 0.2 0.047 13.4 0.0 2.8 3 0 0 3 3 3 1 Part of AAA domain Kinesin PF00225.18 gi|304314599|ref|YP_003849746.1| - 0.012 14.3 0.0 0.026 13.2 0.0 1.5 1 0 0 1 1 1 0 Kinesin motor domain UBA PF00627.26 gi|304314599|ref|YP_003849746.1| - 0.069 13.0 0.2 6 6.8 0.0 2.9 2 0 0 2 2 2 0 UBA/TS-N domain DUF724 PF05266.9 gi|304314599|ref|YP_003849746.1| - 3.3 7.2 10.1 5.7 6.5 3.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) ABC_tran PF00005.22 gi|304314600|ref|YP_003849747.1| - 4e-20 72.5 0.0 2.2e-09 37.7 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|304314600|ref|YP_003849747.1| - 1.9e-10 40.3 0.0 0.2 10.8 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|304314600|ref|YP_003849747.1| - 8.5e-08 31.6 0.0 0.0055 16.1 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.3 gi|304314600|ref|YP_003849747.1| - 3.7e-07 29.6 1.7 0.0027 17.3 0.1 2.6 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|304314600|ref|YP_003849747.1| - 1.1e-06 28.8 6.3 0.099 12.5 0.3 4.3 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|304314600|ref|YP_003849747.1| - 2.2e-06 27.1 0.0 0.1 11.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|304314600|ref|YP_003849747.1| - 2.3e-06 27.7 0.1 0.007 16.3 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain DUF258 PF03193.11 gi|304314600|ref|YP_003849747.1| - 2.7e-06 26.6 0.0 0.023 13.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|304314600|ref|YP_003849747.1| - 4.3e-06 26.6 3.2 0.018 15.0 0.1 3.5 3 0 0 3 3 3 1 DnaJ central domain AAA_22 PF13401.1 gi|304314600|ref|YP_003849747.1| - 4.9e-06 26.7 0.2 0.22 11.6 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|304314600|ref|YP_003849747.1| - 5.4e-06 26.7 0.0 0.13 12.5 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|304314600|ref|YP_003849747.1| - 2.9e-05 23.9 0.0 0.25 11.2 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|304314600|ref|YP_003849747.1| - 6.4e-05 23.3 0.2 0.072 13.4 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|304314600|ref|YP_003849747.1| - 7.6e-05 22.2 0.0 0.023 14.1 0.0 2.8 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|304314600|ref|YP_003849747.1| - 0.0001 23.0 11.7 0.033 14.9 0.0 4.5 4 2 0 4 4 4 2 AAA domain Arch_ATPase PF01637.13 gi|304314600|ref|YP_003849747.1| - 0.00012 21.9 0.1 0.52 9.9 0.0 3.1 3 0 0 3 3 3 2 Archaeal ATPase AAA_33 PF13671.1 gi|304314600|ref|YP_003849747.1| - 0.00022 21.1 0.1 0.23 11.3 0.0 3.3 4 0 0 4 4 3 1 AAA domain KaiC PF06745.8 gi|304314600|ref|YP_003849747.1| - 0.00029 20.0 0.0 0.14 11.2 0.0 2.7 2 0 0 2 2 2 1 KaiC APS_kinase PF01583.15 gi|304314600|ref|YP_003849747.1| - 0.0022 17.6 0.1 3.1 7.4 0.0 3.0 3 0 0 3 3 3 1 Adenylylsulphate kinase MobB PF03205.9 gi|304314600|ref|YP_003849747.1| - 0.0027 17.4 0.4 0.19 11.4 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|304314600|ref|YP_003849747.1| - 0.003 16.5 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|304314600|ref|YP_003849747.1| - 0.0037 16.8 0.0 0.35 10.3 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|304314600|ref|YP_003849747.1| - 0.005 16.3 0.1 0.3 10.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.1 gi|304314600|ref|YP_003849747.1| - 0.0056 15.7 0.1 6.3 5.7 0.1 3.2 4 0 0 4 4 4 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|304314600|ref|YP_003849747.1| - 0.0071 16.2 0.0 0.52 10.2 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|304314600|ref|YP_003849747.1| - 0.01 15.5 0.0 0.99 9.0 0.0 2.6 3 0 0 3 3 2 0 NACHT domain Zn-ribbon_8 PF09723.5 gi|304314600|ref|YP_003849747.1| - 0.01 15.7 0.4 0.01 15.7 0.3 3.6 4 0 0 4 4 4 0 Zinc ribbon domain AAA_19 PF13245.1 gi|304314600|ref|YP_003849747.1| - 0.01 15.5 0.2 4.1 7.2 0.0 3.5 4 0 0 4 4 3 0 Part of AAA domain SbcCD_C PF13558.1 gi|304314600|ref|YP_003849747.1| - 0.015 15.2 0.1 9.1 6.2 0.0 3.8 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.4 gi|304314600|ref|YP_003849747.1| - 0.027 12.9 0.0 0.96 7.8 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein NTPase_1 PF03266.10 gi|304314600|ref|YP_003849747.1| - 0.033 13.8 0.6 2 8.0 0.0 3.3 3 0 0 3 3 2 0 NTPase T2SE PF00437.15 gi|304314600|ref|YP_003849747.1| - 0.051 12.4 0.1 8.6 5.1 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Miro PF08477.8 gi|304314600|ref|YP_003849747.1| - 0.055 13.9 0.1 14 6.2 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein AAA_28 PF13521.1 gi|304314600|ref|YP_003849747.1| - 0.065 13.1 0.0 9.7 6.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain Rad50_zn_hook PF04423.9 gi|304314600|ref|YP_003849747.1| - 0.083 12.3 7.2 2.5 7.6 0.0 4.0 5 0 0 5 5 5 0 Rad50 zinc hook motif RNA_helicase PF00910.17 gi|304314600|ref|YP_003849747.1| - 0.097 12.8 0.0 8 6.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Rubredoxin PF00301.15 gi|304314600|ref|YP_003849747.1| - 1.3 8.9 4.0 15 5.5 0.0 3.8 4 0 0 4 4 3 0 Rubredoxin HATPase_c PF02518.21 gi|304314601|ref|YP_003849748.1| - 2.8e-20 72.0 0.1 5.5e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|304314601|ref|YP_003849748.1| - 8e-12 44.9 0.1 1.8e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|304314601|ref|YP_003849748.1| - 0.00019 21.1 0.0 0.00043 19.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|304314601|ref|YP_003849748.1| - 0.12 12.1 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CopD PF05425.8 gi|304314601|ref|YP_003849748.1| - 0.19 11.9 9.1 0.43 10.8 3.2 2.3 1 1 1 2 2 2 0 Copper resistance protein D Response_reg PF00072.19 gi|304314602|ref|YP_003849749.1| - 1.8e-23 82.6 0.0 2.1e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.7 gi|304314603|ref|YP_003849750.1| - 4.6e-27 93.6 2.4 4.6e-27 93.6 1.6 2.6 3 0 0 3 3 3 1 Histidine kinase Response_reg PF00072.19 gi|304314603|ref|YP_003849750.1| - 3.6e-15 55.9 0.0 7.8e-15 54.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|304314603|ref|YP_003849750.1| - 5e-15 55.7 0.0 2.1e-06 28.0 0.0 3.1 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|304314603|ref|YP_003849750.1| - 1.7e-14 53.4 0.8 9.9e-14 51.0 0.1 2.5 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|304314603|ref|YP_003849750.1| - 3.1e-11 43.0 0.0 8.9e-05 22.2 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|304314603|ref|YP_003849750.1| - 7.8e-11 41.4 0.0 8.2e-05 22.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|304314603|ref|YP_003849750.1| - 8.7e-10 38.6 0.0 0.00096 19.1 0.0 3.0 2 1 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|304314603|ref|YP_003849750.1| - 8.3e-06 25.6 0.0 1.9e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|304314603|ref|YP_003849750.1| - 9.8e-05 22.7 0.2 0.00023 21.5 0.1 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_3 PF08447.6 gi|304314603|ref|YP_003849750.1| - 0.0032 17.5 0.0 0.013 15.5 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|304314603|ref|YP_003849750.1| - 0.073 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MGDG_synth PF06925.6 gi|304314603|ref|YP_003849750.1| - 0.079 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Response_reg PF00072.19 gi|304314604|ref|YP_003849751.1| - 9.1e-22 77.1 0.4 9.1e-22 77.1 0.3 1.5 2 0 0 2 2 2 1 Response regulator receiver domain DUF763 PF05559.6 gi|304314605|ref|YP_003849752.1| - 4.3e-131 436.6 0.0 5e-131 436.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Glycos_transf_1 PF00534.15 gi|304314606|ref|YP_003849753.1| - 1.8e-38 131.6 0.0 2.6e-38 131.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|304314606|ref|YP_003849753.1| - 6.5e-18 65.1 0.0 1.3e-17 64.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|304314606|ref|YP_003849753.1| - 8e-15 55.3 0.0 2.1e-14 53.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|304314606|ref|YP_003849753.1| - 1.2e-13 51.1 0.6 1.9e-13 50.5 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|304314606|ref|YP_003849753.1| - 7.1e-12 45.3 0.2 1.9e-11 43.9 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|304314606|ref|YP_003849753.1| - 2.2e-09 37.4 0.0 4.5e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|304314606|ref|YP_003849753.1| - 0.015 13.7 0.0 0.03 12.8 0.0 1.4 2 0 0 2 2 2 0 Glycosyltransferase family 20 DUF3492 PF11997.3 gi|304314606|ref|YP_003849753.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) Mg_chelatase PF01078.16 gi|304314608|ref|YP_003849755.1| - 9.4e-06 24.9 0.1 2.5e-05 23.5 0.0 1.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|304314608|ref|YP_003849755.1| - 5.3e-05 22.9 0.0 6.1e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|304314608|ref|YP_003849755.1| - 0.023 14.1 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.7 gi|304314608|ref|YP_003849755.1| - 0.11 11.4 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus MCM PF00493.18 gi|304314608|ref|YP_003849755.1| - 0.14 10.9 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 MCM2/3/5 family CobN-Mg_chel PF02514.11 gi|304314609|ref|YP_003849756.1| - 6e-16 57.0 0.0 6.7e-16 56.9 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.11 gi|304314610|ref|YP_003849757.1| - 1.1e-07 29.7 0.0 1.2e-07 29.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PAS PF00989.19 gi|304314611|ref|YP_003849758.1| - 2.3e-47 159.4 0.3 1.2e-15 57.2 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|304314611|ref|YP_003849758.1| - 7.9e-44 148.3 0.1 6.4e-14 52.1 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|304314611|ref|YP_003849758.1| - 3.6e-39 133.1 0.0 1.3e-11 44.4 0.0 5.3 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|304314611|ref|YP_003849758.1| - 4e-28 96.2 0.0 7.2e-07 28.8 0.0 4.9 4 0 0 4 4 4 4 PAS domain HisKA_2 PF07568.7 gi|304314611|ref|YP_003849758.1| - 7.3e-27 93.0 2.3 2.5e-26 91.3 1.6 2.0 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.19 gi|304314611|ref|YP_003849758.1| - 6.8e-18 64.7 0.0 2.5e-17 62.8 0.0 2.1 2 0 0 2 2 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|304314611|ref|YP_003849758.1| - 2.9e-13 49.7 0.1 2.2e-08 34.0 0.0 4.2 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|304314611|ref|YP_003849758.1| - 5.2e-12 45.4 0.1 1.3e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|304314611|ref|YP_003849758.1| - 1.3e-10 41.3 0.1 0.043 13.8 0.0 5.8 4 3 1 5 5 5 2 PAS fold PAS_10 PF13596.1 gi|304314611|ref|YP_003849758.1| - 6.7e-07 29.5 0.0 0.16 12.2 0.0 3.8 4 0 0 4 4 3 2 PAS domain GAF_2 PF13185.1 gi|304314611|ref|YP_003849758.1| - 1.2e-06 29.0 0.2 0.0069 16.8 0.0 4.9 5 0 0 5 5 5 1 GAF domain HATPase_c_2 PF13581.1 gi|304314611|ref|YP_003849758.1| - 2.7e-06 27.1 0.1 1.4e-05 24.8 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|304314611|ref|YP_003849758.1| - 0.00015 21.6 0.0 0.04 13.8 0.0 3.9 4 0 0 4 4 4 1 PAS domain HWE_HK PF07536.9 gi|304314611|ref|YP_003849758.1| - 0.00018 21.8 0.5 0.00046 20.5 0.3 1.7 1 0 0 1 1 1 1 HWE histidine kinase GAF_3 PF13492.1 gi|304314611|ref|YP_003849758.1| - 0.015 15.4 0.3 0.43 10.6 0.1 3.5 3 1 0 3 3 3 0 GAF domain PEP-utilizers_C PF02896.13 gi|304314612|ref|YP_003849759.1| - 5.5e-52 176.4 0.0 7.3e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|304314612|ref|YP_003849759.1| - 2.7e-20 71.7 0.2 5.8e-20 70.6 0.1 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DUF368 PF04018.8 gi|304314613|ref|YP_003849760.1| - 1e-71 241.1 22.0 1e-71 241.1 15.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) AmiS_UreI PF02293.10 gi|304314613|ref|YP_003849760.1| - 0.0071 16.0 4.7 0.0071 16.0 3.3 2.3 1 1 0 2 2 2 1 AmiS/UreI family transporter DUF2619 PF10942.3 gi|304314613|ref|YP_003849760.1| - 5.1 7.1 12.5 0.32 10.9 1.5 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF2619) NERD PF08378.6 gi|304314614|ref|YP_003849761.1| - 1.2e-20 73.8 0.0 2.3e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain COX7B PF05392.6 gi|304314614|ref|YP_003849761.1| - 0.014 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Cytochrome C oxidase chain VIIB SdpI PF13630.1 gi|304314614|ref|YP_003849761.1| - 0.029 14.0 0.3 0.069 12.8 0.2 1.6 1 0 0 1 1 1 0 SdpI/YhfL protein family A2L_zn_ribbon PF08792.5 gi|304314614|ref|YP_003849761.1| - 0.2 11.1 2.2 2.7 7.5 0.1 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain HisKA_2 PF07568.7 gi|304314616|ref|YP_003849763.1| - 3.3e-30 103.7 6.4 7.6e-30 102.5 3.5 2.2 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.5 gi|304314616|ref|YP_003849763.1| - 7e-18 64.6 0.7 3e-08 33.6 0.1 2.6 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|304314616|ref|YP_003849763.1| - 2.5e-16 59.9 1.3 9.7e-08 32.3 0.2 3.6 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|304314616|ref|YP_003849763.1| - 6.7e-14 51.6 0.0 5.1e-09 35.9 0.0 2.9 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|304314616|ref|YP_003849763.1| - 5.9e-12 45.2 0.0 1.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|304314616|ref|YP_003849763.1| - 1.1e-11 44.1 0.1 9.2e-06 25.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|304314616|ref|YP_003849763.1| - 2.5e-08 33.8 1.9 5.3e-08 32.8 0.4 2.3 3 1 0 3 3 1 1 PAS fold HWE_HK PF07536.9 gi|304314616|ref|YP_003849763.1| - 1.6e-07 31.6 0.3 3.5e-07 30.5 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.2 gi|304314616|ref|YP_003849763.1| - 4.6e-06 26.6 0.2 0.0056 16.6 0.0 3.3 3 1 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|304314616|ref|YP_003849763.1| - 1.6e-05 24.6 0.0 3.6e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Tautomerase_2 PF14552.1 gi|304314616|ref|YP_003849763.1| - 0.066 13.2 0.4 0.56 10.2 0.0 2.4 2 0 0 2 2 2 0 Tautomerase enzyme ACT PF01842.20 gi|304314616|ref|YP_003849763.1| - 0.087 12.3 0.2 0.77 9.3 0.0 2.5 2 0 0 2 2 2 0 ACT domain DUF169 PF02596.10 gi|304314618|ref|YP_003849765.1| - 2.4e-10 40.1 0.0 2.6e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF4429 PF14472.1 gi|304314619|ref|YP_003849766.1| - 1.4e-12 47.7 0.0 2.1e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4429) SHOCT PF09851.4 gi|304314619|ref|YP_003849766.1| - 2.7e-07 29.8 0.6 2.7e-07 29.8 0.5 2.5 3 0 0 3 3 3 1 Short C-terminal domain DZR PF12773.2 gi|304314619|ref|YP_003849766.1| - 0.00094 18.9 0.1 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|304314619|ref|YP_003849766.1| - 0.0033 17.1 1.3 0.005 16.4 0.9 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|304314619|ref|YP_003849766.1| - 0.0035 16.7 2.7 0.0061 16.0 1.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|304314619|ref|YP_003849766.1| - 0.007 15.5 3.8 0.011 14.9 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain SDA1 PF05285.7 gi|304314619|ref|YP_003849766.1| - 0.048 12.9 0.1 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 SDA1 NOB1_Zn_bind PF08772.6 gi|304314619|ref|YP_003849766.1| - 0.37 10.6 4.3 0.32 10.8 1.5 2.0 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|304314620|ref|YP_003849767.1| - 1.8e-16 59.6 24.9 5.3e-12 45.3 5.3 3.5 3 1 0 3 3 3 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|304314620|ref|YP_003849767.1| - 5.5e-16 57.5 27.3 1.8e-05 24.0 1.4 4.6 4 0 0 4 4 4 3 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|304314620|ref|YP_003849767.1| - 9e-16 56.5 25.7 2.9e-06 26.2 0.5 4.4 5 0 0 5 5 5 3 zinc-ribbon domain UPF0547 PF10571.4 gi|304314620|ref|YP_003849767.1| - 2.4e-05 23.9 32.2 0.0051 16.4 1.9 6.2 7 1 1 8 8 7 4 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|304314620|ref|YP_003849767.1| - 0.044 13.5 22.1 1 9.1 0.4 5.2 4 1 0 5 5 5 0 Prokaryotic RING finger family 1 RPAP2_Rtr1 PF04181.8 gi|304314620|ref|YP_003849767.1| - 0.25 11.4 0.1 0.25 11.4 0.1 2.9 3 1 0 3 3 3 0 Rtr1/RPAP2 family Nudix_N_2 PF14803.1 gi|304314620|ref|YP_003849767.1| - 0.34 10.6 0.2 0.34 10.6 0.1 7.7 8 2 1 9 9 9 0 Nudix N-terminal zf-IS66 PF13005.2 gi|304314620|ref|YP_003849767.1| - 0.66 9.9 19.0 24 4.9 0.1 6.9 7 0 0 7 7 7 0 zinc-finger binding domain of transposase IS66 PolC_DP2 PF03833.8 gi|304314620|ref|YP_003849767.1| - 0.68 7.5 9.6 0.059 11.0 2.8 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 FYVE PF01363.16 gi|304314620|ref|YP_003849767.1| - 1 9.3 21.3 2.2 8.2 4.4 3.8 2 1 1 3 3 3 0 FYVE zinc finger tRNA-synt_1g PF09334.6 gi|304314620|ref|YP_003849767.1| - 1.3 7.6 4.0 1.5 7.4 0.6 2.3 1 1 1 2 2 2 0 tRNA synthetases class I (M) Zn-ribbon_8 PF09723.5 gi|304314620|ref|YP_003849767.1| - 1.7 8.6 25.7 3.1 7.8 1.0 6.2 5 2 2 7 7 7 0 Zinc ribbon domain Ribosomal_L32p PF01783.18 gi|304314620|ref|YP_003849767.1| - 2 8.6 15.8 0.32 11.2 0.4 4.3 2 1 2 4 4 4 0 Ribosomal L32p protein family NOB1_Zn_bind PF08772.6 gi|304314620|ref|YP_003849767.1| - 3.6 7.4 29.8 4.6 7.1 1.1 5.9 2 1 5 7 7 7 0 Nin one binding (NOB1) Zn-ribbon like zf-B_box PF00643.19 gi|304314620|ref|YP_003849767.1| - 3.8 7.4 23.9 4.3 7.3 0.6 5.2 4 1 1 5 5 5 0 B-box zinc finger IBR PF01485.16 gi|304314620|ref|YP_003849767.1| - 4.8 7.1 25.5 3.8 7.4 1.1 4.6 2 1 1 3 3 3 0 IBR domain Peptidase_M48 PF01435.13 gi|304314621|ref|YP_003849768.1| - 2.1e-20 73.2 0.0 4.2e-20 72.2 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 zf-ribbon_3 PF13248.1 gi|304314621|ref|YP_003849768.1| - 8.4e-06 24.8 1.4 1.4e-05 24.0 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Peptidase_M56 PF05569.6 gi|304314621|ref|YP_003849768.1| - 0.00011 21.2 0.2 0.00017 20.7 0.2 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 zinc_ribbon_2 PF13240.1 gi|304314621|ref|YP_003849768.1| - 0.00094 18.5 3.3 0.0016 17.8 2.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|304314621|ref|YP_003849768.1| - 0.0013 18.5 0.5 0.0022 17.7 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|304314621|ref|YP_003849768.1| - 6.6 7.0 6.4 22 5.3 0.2 2.8 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain CarboxypepD_reg PF13620.1 gi|304314622|ref|YP_003849769.1| - 1.9e-59 197.6 16.0 7.5e-09 35.5 0.0 12.2 12 0 0 12 12 12 10 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|304314622|ref|YP_003849769.1| - 6e-26 90.3 0.0 0.00059 19.8 0.0 9.0 8 1 1 9 9 9 4 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|304314622|ref|YP_003849769.1| - 9.8e-12 44.6 3.6 0.0047 16.8 0.0 8.6 9 0 0 9 9 9 1 Bacterial Ig-like domain (group 1) Cna_B PF05738.8 gi|304314622|ref|YP_003849769.1| - 1.2e-11 44.1 7.7 0.023 14.4 0.0 7.2 7 0 0 7 7 7 4 Cna protein B-type domain Big_3_4 PF13754.1 gi|304314622|ref|YP_003849769.1| - 4.8e-08 33.1 37.1 0.0017 18.5 0.2 10.4 11 0 0 11 11 9 3 Bacterial Ig-like domain (group 3) Dioxygenase_C PF00775.16 gi|304314622|ref|YP_003849769.1| - 2.1e-07 30.4 1.5 0.71 9.0 0.0 7.0 8 0 0 8 8 8 2 Dioxygenase DUF824 PF05688.6 gi|304314622|ref|YP_003849769.1| - 1.1e-06 28.2 4.9 0.16 11.6 0.2 5.3 5 0 0 5 5 5 2 Salmonella repeat of unknown function (DUF824) Big_5 PF13205.1 gi|304314622|ref|YP_003849769.1| - 4e-06 27.3 0.0 0.0023 18.5 0.0 4.4 3 0 0 3 3 3 1 Bacterial Ig-like domain DUF4198 PF10670.4 gi|304314622|ref|YP_003849769.1| - 2.1e-05 24.6 0.0 15 5.4 0.0 5.8 6 0 0 6 6 6 0 Domain of unknown function (DUF4198) Big_3_2 PF12245.3 gi|304314622|ref|YP_003849769.1| - 0.0013 18.2 0.0 0.072 12.6 0.0 3.8 5 0 0 5 5 5 1 Bacterial Ig-like domain (group 3) fn3_3 PF14686.1 gi|304314622|ref|YP_003849769.1| - 0.0062 16.6 1.8 5.4 7.2 0.0 3.6 3 0 0 3 3 2 2 Polysaccharide lyase family 4, domain II DUF4625 PF15418.1 gi|304314622|ref|YP_003849769.1| - 0.01 15.9 0.3 0.81 9.8 0.0 4.1 5 1 1 6 6 6 0 Domain of unknown function (DUF4625) DUF2012 PF09430.5 gi|304314622|ref|YP_003849769.1| - 0.12 12.2 0.6 49 3.7 0.0 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2012) Pollen_Ole_e_I PF01190.12 gi|304314622|ref|YP_003849769.1| - 0.89 9.4 0.0 41 4.0 0.0 3.2 4 0 0 4 4 4 0 Pollen proteins Ole e I like UPF0560 PF10577.4 gi|304314622|ref|YP_003849769.1| - 5.5 5.1 0.0 8.3 4.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 CarboxypepD_reg PF13620.1 gi|304314623|ref|YP_003849770.1| - 7.6e-08 32.3 0.0 2.2e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|304314623|ref|YP_003849770.1| - 1.1e-05 25.3 0.0 2.9e-05 24.0 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4480) YtkA PF13115.1 gi|304314623|ref|YP_003849770.1| - 0.012 15.9 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 YtkA-like PEGA PF08308.6 gi|304314623|ref|YP_003849770.1| - 0.015 15.1 0.0 4.8 7.0 0.0 2.2 2 0 0 2 2 2 0 PEGA domain Big_1 PF02369.11 gi|304314623|ref|YP_003849770.1| - 0.029 14.2 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|304314623|ref|YP_003849770.1| - 0.031 13.8 0.0 0.098 12.3 0.0 1.7 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.1 gi|304314624|ref|YP_003849771.1| - 1.8e-22 79.1 1.9 4.2e-13 49.1 0.1 3.3 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|304314624|ref|YP_003849771.1| - 1e-10 41.5 0.0 0.0002 21.3 0.0 3.1 3 0 0 3 3 3 3 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|304314624|ref|YP_003849771.1| - 6.1e-05 22.7 0.3 0.0091 15.7 0.0 2.5 2 0 0 2 2 2 2 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|304314624|ref|YP_003849771.1| - 0.0097 15.8 0.0 2.9 7.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF1416 PF07210.7 gi|304314624|ref|YP_003849771.1| - 0.077 12.6 0.0 0.86 9.2 0.0 2.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1416) DUF1232 PF06803.7 gi|304314625|ref|YP_003849772.1| - 1e-10 40.8 0.1 1.9e-10 40.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) UvrD-helicase PF00580.16 gi|304314626|ref|YP_003849773.1| - 1.5e-71 241.3 0.0 2.2e-70 237.4 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|304314626|ref|YP_003849773.1| - 2.1e-55 188.6 0.0 4.6e-55 187.4 0.0 1.6 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|304314626|ref|YP_003849773.1| - 9.5e-25 87.4 2.2 1.1e-24 87.2 0.8 1.6 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|304314626|ref|YP_003849773.1| - 2.6e-14 52.7 0.0 6.3e-14 51.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|304314626|ref|YP_003849773.1| - 9.8e-09 35.2 0.0 5.8e-08 32.8 0.0 2.3 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|304314626|ref|YP_003849773.1| - 9.5e-07 28.5 0.0 2.7e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|304314626|ref|YP_003849773.1| - 1.4e-05 24.7 0.1 1.9 7.9 0.0 4.3 4 1 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|304314626|ref|YP_003849773.1| - 9.1e-05 22.1 0.0 0.00023 20.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cas_Cas4 PF01930.12 gi|304314626|ref|YP_003849773.1| - 0.00024 21.0 0.0 0.00074 19.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF83 AAA_12 PF13087.1 gi|304314626|ref|YP_003849773.1| - 0.00038 19.8 0.0 0.02 14.2 0.0 3.0 4 0 0 4 4 4 1 AAA domain PBP_GOBP PF01395.17 gi|304314626|ref|YP_003849773.1| - 0.012 15.2 0.9 0.081 12.5 0.7 2.2 2 0 0 2 2 2 0 PBP/GOBP family PPR_2 PF13041.1 gi|304314626|ref|YP_003849773.1| - 0.047 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 PPR repeat family DUF4224 PF13986.1 gi|304314626|ref|YP_003849773.1| - 0.075 12.5 0.1 0.25 10.9 0.0 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4224) ResIII PF04851.10 gi|304314626|ref|YP_003849773.1| - 0.18 11.6 0.1 0.66 9.7 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Zip PF02535.17 gi|304314627|ref|YP_003849774.1| - 2.9e-22 79.0 14.7 5.6e-18 65.0 3.9 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter DUF1538 PF07556.6 gi|304314627|ref|YP_003849774.1| - 0.0022 17.1 0.1 0.0022 17.1 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1538) Ferritin PF00210.19 gi|304314628|ref|YP_003849775.1| - 9.7e-18 64.2 0.0 1.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.1 gi|304314628|ref|YP_003849775.1| - 0.0045 16.9 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|304314628|ref|YP_003849775.1| - 0.0084 16.4 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Cyt-b5 PF00173.23 gi|304314629|ref|YP_003849776.1| - 3.1e-09 36.4 0.0 3.6e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain TPP_enzyme_N PF02776.13 gi|304314630|ref|YP_003849777.1| - 1.9e-51 173.9 0.3 2.2e-51 173.7 0.2 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Rubredoxin PF00301.15 gi|304314630|ref|YP_003849777.1| - 3.7e-11 42.7 3.5 7.5e-11 41.7 2.4 1.5 1 0 0 1 1 1 1 Rubredoxin C1_3 PF07649.7 gi|304314630|ref|YP_003849777.1| - 0.14 12.1 0.9 0.14 12.1 0.6 1.8 2 0 0 2 2 2 0 C1-like domain zf-C2H2_4 PF13894.1 gi|304314630|ref|YP_003849777.1| - 0.39 11.1 1.5 20 5.7 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-MIZ PF02891.15 gi|304314630|ref|YP_003849777.1| - 1.8 8.1 4.0 4 7.0 2.7 1.6 1 1 0 1 1 1 0 MIZ/SP-RING zinc finger zf-met PF12874.2 gi|304314630|ref|YP_003849777.1| - 3.9 7.8 4.8 33 4.8 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger of C2H2 type zf-H2C2_5 PF13909.1 gi|304314630|ref|YP_003849777.1| - 5.1 7.5 5.7 1.3 9.4 0.4 2.4 2 0 0 2 2 2 0 C2H2-type zinc-finger domain TPP_enzyme_M PF00205.17 gi|304314631|ref|YP_003849778.1| - 3.9e-29 101.1 0.1 4.9e-29 100.8 0.1 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|304314631|ref|YP_003849778.1| - 0.14 11.7 0.0 0.2 11.1 0.0 1.4 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_C PF02775.16 gi|304314632|ref|YP_003849779.1| - 2.2e-40 137.7 0.0 2.8e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain tRNA_synt_1c_R1 PF04558.10 gi|304314632|ref|YP_003849779.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ABC_tran PF00005.22 gi|304314633|ref|YP_003849780.1| - 1.6e-35 122.4 0.0 2.6e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|304314633|ref|YP_003849780.1| - 7.6e-18 64.3 1.3 5.5e-17 61.6 0.1 3.1 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|304314633|ref|YP_003849780.1| - 3.4e-12 46.9 0.2 1e-05 25.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|304314633|ref|YP_003849780.1| - 1e-10 41.4 0.6 2.4e-09 37.0 0.1 2.9 2 0 0 2 2 2 1 TOBE domain SbcCD_C PF13558.1 gi|304314633|ref|YP_003849780.1| - 2.6e-05 24.0 0.1 8.9e-05 22.3 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|304314633|ref|YP_003849780.1| - 0.00028 20.1 0.1 0.0072 15.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|304314633|ref|YP_003849780.1| - 0.0013 18.2 0.0 0.0028 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|304314633|ref|YP_003849780.1| - 0.0015 18.5 0.2 0.004 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|304314633|ref|YP_003849780.1| - 0.0036 17.4 0.4 0.02 15.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|304314633|ref|YP_003849780.1| - 0.005 17.1 0.0 0.0084 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|304314633|ref|YP_003849780.1| - 0.0081 15.7 0.0 0.057 12.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|304314633|ref|YP_003849780.1| - 0.016 14.3 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KdpD PF02702.12 gi|304314633|ref|YP_003849780.1| - 0.018 14.1 0.1 0.041 13.0 0.1 1.6 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_17 PF13207.1 gi|304314633|ref|YP_003849780.1| - 0.045 14.5 0.0 0.1 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|304314633|ref|YP_003849780.1| - 0.054 13.4 0.0 0.089 12.7 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|304314633|ref|YP_003849780.1| - 0.1 12.0 0.0 0.24 10.8 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|304314633|ref|YP_003849780.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304314633|ref|YP_003849780.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain BPD_transp_1 PF00528.17 gi|304314634|ref|YP_003849781.1| - 1.3e-15 57.3 14.3 1.6e-15 57.1 9.7 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NicO PF03824.11 gi|304314634|ref|YP_003849781.1| - 0.09 12.0 10.2 0.05 12.9 1.9 2.2 2 0 0 2 2 2 0 High-affinity nickel-transport protein PBP_like_2 PF12849.2 gi|304314635|ref|YP_003849782.1| - 6.5e-24 84.8 1.4 8.3e-24 84.5 1.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|304314635|ref|YP_003849782.1| - 1.3e-15 57.6 0.0 2.4e-15 56.7 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|304314635|ref|YP_003849782.1| - 3.4e-07 30.2 1.0 7.8e-05 22.5 0.7 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|304314635|ref|YP_003849782.1| - 1.5e-06 27.5 0.0 2.3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 LysR substrate binding domain PBP_like PF12727.2 gi|304314635|ref|YP_003849782.1| - 0.039 12.9 0.0 0.1 11.5 0.0 1.8 1 1 0 1 1 1 0 PBP superfamily domain SBP_bac_6 PF13343.1 gi|304314635|ref|YP_003849782.1| - 0.075 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein ATP-cone PF03477.11 gi|304314636|ref|YP_003849783.1| - 1.5e-12 47.7 0.9 1.6e-12 47.6 0.7 1.1 1 0 0 1 1 1 1 ATP cone domain PCP_red PF08369.5 gi|304314636|ref|YP_003849783.1| - 0.17 11.7 1.1 6 6.8 0.0 3.0 3 1 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit DUF2238 PF09997.4 gi|304314637|ref|YP_003849784.1| - 1.1e-05 24.8 0.4 1.1e-05 24.8 0.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2238) DUF1218 PF06749.7 gi|304314639|ref|YP_003849786.1| - 0.0014 19.0 2.7 0.16 12.4 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1218) SirB PF04247.7 gi|304314639|ref|YP_003849786.1| - 0.068 12.8 4.5 0.083 12.6 3.1 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB EpsG PF14897.1 gi|304314639|ref|YP_003849786.1| - 0.077 11.9 5.5 0.15 10.9 3.8 1.5 1 1 0 1 1 1 0 EpsG family DUF2231 PF09990.4 gi|304314639|ref|YP_003849786.1| - 0.099 12.9 5.0 0.12 12.7 3.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) DUF3522 PF12036.3 gi|304314639|ref|YP_003849786.1| - 0.34 10.6 5.7 0.61 9.8 3.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3522) DUF4389 PF14333.1 gi|304314639|ref|YP_003849786.1| - 5.6 6.7 7.9 3.1 7.5 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4389) PrgI PF12666.2 gi|304314639|ref|YP_003849786.1| - 7.5 6.7 8.2 2.6 8.2 1.9 1.9 1 1 1 2 2 2 0 PrgI family protein HisKA_2 PF07568.7 gi|304314640|ref|YP_003849787.1| - 2e-28 98.0 4.8 2e-28 98.0 3.3 2.7 3 0 0 3 3 2 1 Histidine kinase PAS_9 PF13426.1 gi|304314640|ref|YP_003849787.1| - 1.1e-21 77.1 0.0 2.9e-13 50.0 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|304314640|ref|YP_003849787.1| - 2.2e-18 66.0 0.0 6.5e-10 38.7 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|304314640|ref|YP_003849787.1| - 1.8e-15 56.9 0.0 4.7e-08 33.0 0.0 3.0 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|304314640|ref|YP_003849787.1| - 1.7e-10 40.5 0.0 3.5e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|304314640|ref|YP_003849787.1| - 3.2e-09 36.3 0.0 1.8e-06 27.6 0.0 2.7 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.9 gi|304314640|ref|YP_003849787.1| - 8.5e-06 26.1 0.2 1.7e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.1 gi|304314640|ref|YP_003849787.1| - 6.7e-05 22.8 0.0 0.00069 19.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|304314640|ref|YP_003849787.1| - 0.0001 22.2 0.0 0.08 12.9 0.0 3.5 2 2 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|304314640|ref|YP_003849787.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|304314640|ref|YP_003849787.1| - 0.0048 16.9 0.0 0.025 14.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_5 PF07310.8 gi|304314640|ref|YP_003849787.1| - 0.052 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PAS domain DUF4011 PF13195.1 gi|304314641|ref|YP_003849788.1| - 3.2e-46 157.5 1.9 7.4e-46 156.3 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4011) DUF3320 PF11784.3 gi|304314641|ref|YP_003849788.1| - 1.3e-17 63.0 0.5 1.9e-16 59.3 0.3 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) AAA_11 PF13086.1 gi|304314641|ref|YP_003849788.1| - 2.4e-17 63.3 0.1 1.6e-08 34.4 0.0 3.4 4 0 0 4 4 4 2 AAA domain AAA_12 PF13087.1 gi|304314641|ref|YP_003849788.1| - 6.5e-15 55.0 0.0 2.1e-14 53.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314641|ref|YP_003849788.1| - 3e-12 46.0 0.0 1.1e-11 44.3 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|304314641|ref|YP_003849788.1| - 1.3e-07 31.4 0.2 0.00026 20.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|304314641|ref|YP_003849788.1| - 9.9e-06 24.7 0.1 0.0023 16.9 0.0 3.1 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|304314641|ref|YP_003849788.1| - 0.00019 21.0 0.1 0.25 10.8 0.0 2.6 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|304314641|ref|YP_003849788.1| - 0.0012 18.2 0.0 0.0026 17.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein UvrD-helicase PF00580.16 gi|304314641|ref|YP_003849788.1| - 0.0025 17.1 0.0 0.0063 15.8 0.0 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain ResIII PF04851.10 gi|304314641|ref|YP_003849788.1| - 0.0091 15.8 0.0 0.089 12.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RAP PF08373.5 gi|304314641|ref|YP_003849788.1| - 0.022 14.5 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 RAP domain FtsK_SpoIIIE PF01580.13 gi|304314641|ref|YP_003849788.1| - 0.03 13.7 0.0 0.098 12.1 0.0 2.0 1 0 0 1 1 1 0 FtsK/SpoIIIE family Helicase_RecD PF05127.9 gi|304314641|ref|YP_003849788.1| - 0.031 13.9 0.0 0.81 9.2 0.0 2.4 2 0 0 2 2 2 0 Helicase AAA_25 PF13481.1 gi|304314641|ref|YP_003849788.1| - 0.04 13.3 0.0 0.33 10.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|304314641|ref|YP_003849788.1| - 0.059 12.1 0.0 0.14 10.9 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA PF00004.24 gi|304314641|ref|YP_003849788.1| - 0.11 12.7 0.0 1.1 9.4 0.0 2.8 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|304314641|ref|YP_003849788.1| - 0.13 12.4 0.0 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF4060 PF13269.1 gi|304314641|ref|YP_003849788.1| - 0.14 12.1 0.0 2.1 8.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4060) DUF1704 PF08014.6 gi|304314641|ref|YP_003849788.1| - 0.15 11.0 0.0 0.59 9.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1704) Adeno_IVa2 PF02456.10 gi|304314641|ref|YP_003849788.1| - 0.19 10.3 0.0 0.37 9.3 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein RNA_helicase PF00910.17 gi|304314641|ref|YP_003849788.1| - 0.23 11.6 0.0 2.2 8.4 0.0 2.5 3 0 0 3 3 2 0 RNA helicase PIF1 PF05970.9 gi|304314641|ref|YP_003849788.1| - 0.32 9.8 0.0 0.61 8.9 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_17 PF13207.1 gi|304314641|ref|YP_003849788.1| - 0.52 11.1 4.7 6.4 7.6 0.0 4.4 4 1 0 4 4 4 0 AAA domain Tmemb_185A PF10269.4 gi|304314642|ref|YP_003849789.1| - 0.064 12.8 4.6 0.072 12.6 3.2 1.0 1 0 0 1 1 1 0 Transmembrane Fragile-X-F protein Rab5ip PF07019.7 gi|304314643|ref|YP_003849790.1| - 0.097 12.8 3.7 0.18 11.9 0.5 2.1 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) Wzy_C PF04932.10 gi|304314643|ref|YP_003849790.1| - 0.41 10.4 6.9 3.8 7.2 4.7 2.0 1 1 0 1 1 1 0 O-Antigen ligase YesK PF14150.1 gi|304314643|ref|YP_003849790.1| - 0.72 9.9 10.1 0.97 9.5 1.8 2.3 2 1 0 2 2 2 0 YesK-like protein COX15-CtaA PF02628.10 gi|304314643|ref|YP_003849790.1| - 2.2 7.0 7.2 9.8 4.9 5.0 1.8 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein DUF2975 PF11188.3 gi|304314643|ref|YP_003849790.1| - 9.2 5.9 11.4 14 5.3 7.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) RNase_H_2 PF13482.1 gi|304314644|ref|YP_003849791.1| - 1.2e-33 116.2 0.0 1.6e-33 115.7 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|304314644|ref|YP_003849791.1| - 1.9e-05 23.7 0.0 4.8e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|304314644|ref|YP_003849791.1| - 0.0014 18.2 0.0 0.0033 16.9 0.0 1.6 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_5 PF14520.1 gi|304314644|ref|YP_003849791.1| - 0.0042 17.2 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DEAD PF00270.24 gi|304314645|ref|YP_003849792.1| - 4.6e-24 84.7 0.0 8e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|304314645|ref|YP_003849792.1| - 6.6e-19 68.2 0.1 1.7e-18 66.9 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|304314645|ref|YP_003849792.1| - 5.4e-10 38.9 0.0 2.5e-09 36.8 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|304314645|ref|YP_003849792.1| - 0.0011 18.8 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TPR_19 PF14559.1 gi|304314645|ref|YP_003849792.1| - 0.055 13.8 0.1 0.12 12.7 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat T2SE PF00437.15 gi|304314645|ref|YP_003849792.1| - 0.058 12.2 0.0 0.13 11.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein SNase PF00565.12 gi|304314646|ref|YP_003849793.1| - 1.2e-17 64.0 0.0 1.8e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF2973 PF11189.3 gi|304314647|ref|YP_003849794.1| - 0.017 14.8 3.6 0.18 11.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) MoeZ_MoeB PF05237.8 gi|304314647|ref|YP_003849794.1| - 0.084 12.4 0.7 0.12 11.9 0.2 1.5 1 1 1 2 2 2 0 MoeZ/MoeB domain Abhydrolase_9_N PF15420.1 gi|304314647|ref|YP_003849794.1| - 0.084 12.6 1.5 0.098 12.3 1.0 1.0 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus MFS_2 PF13347.1 gi|304314647|ref|YP_003849794.1| - 0.089 11.1 3.0 0.1 10.9 2.1 1.0 1 0 0 1 1 1 0 MFS/sugar transport protein DUF4064 PF13273.1 gi|304314647|ref|YP_003849794.1| - 0.18 11.9 7.4 0.6 10.2 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF3671 PF12420.3 gi|304314647|ref|YP_003849794.1| - 0.22 11.4 1.7 0.27 11.2 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function Colicin_V PF02674.11 gi|304314647|ref|YP_003849794.1| - 0.42 10.4 5.5 0.51 10.1 3.8 1.0 1 0 0 1 1 1 0 Colicin V production protein DUF4282 PF14110.1 gi|304314647|ref|YP_003849794.1| - 0.57 10.4 4.1 0.76 10.0 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF4007 PF13182.1 gi|304314648|ref|YP_003849795.1| - 8.9e-18 64.1 1.1 1.8e-17 63.0 0.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF4007) HTH_5 PF01022.15 gi|304314648|ref|YP_003849795.1| - 0.085 12.5 0.2 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family RGS-like PF09128.6 gi|304314649|ref|YP_003849796.1| - 0.0034 16.8 0.4 0.0074 15.7 0.3 1.6 1 1 0 1 1 1 1 Regulator of G protein signalling-like domain LAGLIDADG_3 PF14528.1 gi|304314649|ref|YP_003849796.1| - 0.043 14.0 5.4 0.19 11.9 0.0 3.3 3 2 1 4 4 4 0 LAGLIDADG-like domain HD_3 PF13023.1 gi|304314649|ref|YP_003849796.1| - 0.3 10.8 2.4 0.68 9.6 0.3 2.1 2 0 0 2 2 2 0 HD domain LAGLIDADG_1 PF00961.14 gi|304314649|ref|YP_003849796.1| - 0.46 11.0 20.4 0.13 12.8 0.8 4.2 2 2 0 2 2 2 0 LAGLIDADG endonuclease AAA_22 PF13401.1 gi|304314651|ref|YP_003849798.1| - 7.1e-05 22.9 5.5 0.0021 18.2 0.0 4.5 4 1 0 4 4 4 1 AAA domain DUF87 PF01935.12 gi|304314652|ref|YP_003849799.1| - 4.9e-24 85.4 0.0 6.9e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|304314652|ref|YP_003849799.1| - 1.2e-18 67.6 1.1 2.3e-18 66.7 0.7 1.5 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|304314652|ref|YP_003849799.1| - 9.1e-07 28.5 0.0 5.8e-05 22.6 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|304314652|ref|YP_003849799.1| - 0.00047 18.8 0.0 0.0021 16.7 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|304314652|ref|YP_003849799.1| - 0.02 14.3 0.1 0.086 12.3 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Reg_prop PF07494.6 gi|304314652|ref|YP_003849799.1| - 0.09 12.8 0.0 0.32 11.1 0.0 2.0 1 0 0 1 1 1 0 Two component regulator propeller AAA_22 PF13401.1 gi|304314652|ref|YP_003849799.1| - 0.13 12.4 0.1 3.2 7.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain NurA PF09376.5 gi|304314653|ref|YP_003849800.1| - 5.3e-08 32.6 0.4 7.4e-08 32.1 0.2 1.3 1 0 0 1 1 1 1 NurA domain TGT PF01702.13 gi|304314654|ref|YP_003849801.1| - 1.9e-11 43.6 0.0 2.8e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase CDKN3 PF05706.7 gi|304314654|ref|YP_003849801.1| - 0.088 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Robl_LC7 PF03259.12 gi|304314655|ref|YP_003849802.1| - 4.3e-21 74.2 0.3 6e-21 73.8 0.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain HMD PF03201.11 gi|304314656|ref|YP_003849803.1| - 1.7e-39 133.6 3.3 3.3e-39 132.7 2.3 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.10 gi|304314656|ref|YP_003849803.1| - 0.00013 21.8 0.4 0.00036 20.4 0.0 1.8 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|304314656|ref|YP_003849803.1| - 0.003 17.9 0.1 0.032 14.6 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TIM-br_sig_trns PF09370.5 gi|304314656|ref|YP_003849803.1| - 0.03 13.3 0.2 6 5.8 0.0 2.3 2 0 0 2 2 2 0 TIM-barrel signal transduction protein Ion_trans_2 PF07885.11 gi|304314657|ref|YP_003849804.1| - 3e-11 42.8 7.4 3e-11 42.8 5.1 2.0 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|304314657|ref|YP_003849804.1| - 4.8e-08 32.5 8.4 9.4e-08 31.5 5.8 1.5 1 1 0 1 1 1 1 Ion transport protein IncA PF04156.9 gi|304314657|ref|YP_003849804.1| - 0.061 12.9 0.0 0.061 12.9 0.0 2.0 3 0 0 3 3 3 0 IncA protein DUF1664 PF07889.7 gi|304314657|ref|YP_003849804.1| - 0.14 11.9 0.1 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) BC10 PF06726.7 gi|304314657|ref|YP_003849804.1| - 0.89 9.6 3.1 5.3 7.1 0.1 2.8 3 0 0 3 3 3 0 Bladder cancer-related protein BC10 YbjQ_1 PF01906.12 gi|304314658|ref|YP_003849805.1| - 5.7e-10 39.5 0.4 1.1e-09 38.6 0.3 1.5 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF3556 PF12077.3 gi|304314658|ref|YP_003849805.1| - 0.031 12.2 0.5 0.038 11.9 0.3 1.2 1 0 0 1 1 1 0 Transmembrane protein of unknown function (DUF3556) DUF2422 PF10337.4 gi|304314658|ref|YP_003849805.1| - 0.26 10.0 1.7 0.33 9.6 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) YbjQ_1 PF01906.12 gi|304314659|ref|YP_003849806.1| - 5.1e-34 116.8 0.9 5.6e-34 116.7 0.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding PsbP PF01789.11 gi|304314660|ref|YP_003849807.1| - 1.7e-05 24.3 0.1 0.00013 21.4 0.1 1.9 1 1 0 1 1 1 1 PsbP DUF1795 PF08786.6 gi|304314660|ref|YP_003849807.1| - 0.04 13.7 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1795) UvrD-helicase PF00580.16 gi|304314662|ref|YP_003849809.1| - 9.9e-73 245.1 0.0 1.5e-71 241.3 0.0 2.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|304314662|ref|YP_003849809.1| - 1.6e-55 188.9 0.1 3.3e-55 187.9 0.1 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|304314662|ref|YP_003849809.1| - 1.2e-26 93.6 0.0 2.9e-26 92.4 0.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|304314662|ref|YP_003849809.1| - 2e-13 49.9 0.1 4.8e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|304314662|ref|YP_003849809.1| - 6.9e-09 35.5 0.0 4.6e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|304314662|ref|YP_003849809.1| - 8.4e-09 35.5 0.0 2e-07 31.0 0.0 3.2 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|304314662|ref|YP_003849809.1| - 2.4e-05 23.7 0.1 0.017 14.5 0.0 3.1 3 0 0 3 3 3 1 AAA domain Viral_helicase1 PF01443.13 gi|304314662|ref|YP_003849809.1| - 3.8e-05 23.3 0.0 1.4 8.3 0.0 4.1 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|304314662|ref|YP_003849809.1| - 0.00018 21.1 0.0 0.00036 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|304314662|ref|YP_003849809.1| - 0.0014 17.9 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 DNA replication factor Dna2 Cas_Cas4 PF01930.12 gi|304314662|ref|YP_003849809.1| - 0.0023 17.8 0.0 0.15 11.9 0.0 2.9 2 1 1 3 3 3 1 Domain of unknown function DUF83 HOOK PF05622.7 gi|304314664|ref|YP_003849811.1| - 0.016 13.0 0.0 0.021 12.6 0.0 1.1 1 0 0 1 1 1 0 HOOK protein CobN-Mg_chel PF02514.11 gi|304314665|ref|YP_003849812.1| - 2.9e-236 786.6 0.0 2.5e-235 783.5 0.0 1.9 1 1 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|304314665|ref|YP_003849812.1| - 9.5e-06 25.5 2.1 3.2e-05 23.9 1.4 1.9 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain AAA_16 PF13191.1 gi|304314666|ref|YP_003849813.1| - 2.3e-08 34.2 0.0 3.7e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|304314666|ref|YP_003849813.1| - 6.1e-08 32.6 0.1 9.8e-08 31.9 0.0 1.6 1 1 1 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|304314666|ref|YP_003849813.1| - 8.1e-05 22.3 0.0 0.037 13.6 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.7 gi|304314666|ref|YP_003849813.1| - 9.7e-05 21.5 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|304314666|ref|YP_003849813.1| - 0.0011 19.1 0.0 0.0023 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|304314666|ref|YP_003849813.1| - 0.0016 18.7 0.0 0.0042 17.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314666|ref|YP_003849813.1| - 0.0038 16.9 0.0 0.0062 16.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|304314666|ref|YP_003849813.1| - 0.0049 16.3 0.0 0.0089 15.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|304314666|ref|YP_003849813.1| - 0.0065 15.3 0.0 0.01 14.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain cobW PF02492.14 gi|304314666|ref|YP_003849813.1| - 0.0096 15.3 0.2 0.021 14.2 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|304314666|ref|YP_003849813.1| - 0.0098 15.0 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 T2SE PF00437.15 gi|304314666|ref|YP_003849813.1| - 0.011 14.7 0.0 0.031 13.1 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|304314666|ref|YP_003849813.1| - 0.017 15.0 0.0 0.039 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|304314666|ref|YP_003849813.1| - 0.032 14.4 0.0 0.057 13.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|304314666|ref|YP_003849813.1| - 0.033 14.5 0.0 0.1 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|304314666|ref|YP_003849813.1| - 0.034 14.9 0.1 0.094 13.5 0.0 1.9 2 1 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|304314666|ref|YP_003849813.1| - 0.048 13.2 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|304314666|ref|YP_003849813.1| - 0.062 13.8 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|304314666|ref|YP_003849813.1| - 0.062 12.7 0.0 0.082 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain KAP_NTPase PF07693.9 gi|304314666|ref|YP_003849813.1| - 0.14 11.1 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain RNA12 PF10443.4 gi|304314666|ref|YP_003849813.1| - 0.16 10.4 0.0 0.35 9.2 0.0 1.5 2 0 0 2 2 2 0 RNA12 protein AAA_29 PF13555.1 gi|304314666|ref|YP_003849813.1| - 0.16 11.5 0.1 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF1887 PF09002.6 gi|304314667|ref|YP_003849814.1| - 2.4e-07 29.4 0.1 4e-07 28.7 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.5 gi|304314667|ref|YP_003849814.1| - 1.1e-06 27.5 0.0 1.4e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|304314667|ref|YP_003849814.1| - 2.6e-06 27.1 0.0 3.9e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_24 PF13412.1 gi|304314667|ref|YP_003849814.1| - 3.4e-06 26.3 0.1 5.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|304314667|ref|YP_003849814.1| - 3.6e-06 26.5 0.2 1.2e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|304314667|ref|YP_003849814.1| - 3.5e-05 23.3 0.0 5.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|304314667|ref|YP_003849814.1| - 6.4e-05 22.5 0.1 0.00013 21.5 0.1 1.6 1 0 0 1 1 1 1 HTH domain Cas_NE0113 PF09623.5 gi|304314667|ref|YP_003849814.1| - 8.5e-05 22.1 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) MarR PF01047.17 gi|304314667|ref|YP_003849814.1| - 0.00014 21.5 0.1 0.00025 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|304314667|ref|YP_003849814.1| - 0.00016 21.4 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|304314667|ref|YP_003849814.1| - 0.0018 18.2 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|304314667|ref|YP_003849814.1| - 0.043 13.4 0.0 0.077 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|304314667|ref|YP_003849814.1| - 0.045 13.3 0.1 0.087 12.4 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|304314667|ref|YP_003849814.1| - 0.092 12.5 0.3 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_29 PF13551.1 gi|304314667|ref|YP_003849814.1| - 0.096 12.8 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF2085 PF09858.4 gi|304314668|ref|YP_003849815.1| - 1.2e-32 111.8 1.7 1.3e-32 111.6 1.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) DUF1097 PF06496.6 gi|304314668|ref|YP_003849815.1| - 0.068 12.9 2.3 0.67 9.7 1.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1097) DUF4199 PF13858.1 gi|304314668|ref|YP_003849815.1| - 0.091 12.6 5.2 0.11 12.4 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) PrgI PF12666.2 gi|304314668|ref|YP_003849815.1| - 1.4 9.0 5.4 0.83 9.8 2.1 1.7 1 1 1 2 2 2 0 PrgI family protein DUF3242 PF11586.3 gi|304314669|ref|YP_003849816.1| - 0.11 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) DUF4064 PF13273.1 gi|304314670|ref|YP_003849817.1| - 1.6e-15 57.0 15.1 1.6e-15 57.0 10.5 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) SseC PF04888.7 gi|304314670|ref|YP_003849817.1| - 0.46 9.7 4.7 0.46 9.7 3.3 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family BCLP PF12304.3 gi|304314670|ref|YP_003849817.1| - 0.57 9.5 6.9 3 7.2 0.1 2.1 1 1 1 2 2 2 0 Beta-casein like protein PhaG_MnhG_YufB PF03334.9 gi|304314670|ref|YP_003849817.1| - 1.4 8.9 11.9 0.39 10.7 6.1 1.6 1 1 1 2 2 2 0 Na+/H+ antiporter subunit CRPA PF05745.6 gi|304314670|ref|YP_003849817.1| - 4.2 7.1 13.2 1.2 8.9 1.2 2.0 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) zinc_ribbon_2 PF13240.1 gi|304314671|ref|YP_003849818.1| - 3.1e-07 29.6 2.4 6.8e-07 28.5 1.7 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|304314671|ref|YP_003849818.1| - 4.5e-07 28.8 2.4 8.8e-07 27.9 1.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|304314671|ref|YP_003849818.1| - 6.6e-05 22.6 1.2 0.00012 21.7 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon OppC_N PF12911.2 gi|304314671|ref|YP_003849818.1| - 0.037 13.4 0.2 0.079 12.3 0.2 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C UPF0547 PF10571.4 gi|304314671|ref|YP_003849818.1| - 0.1 12.3 3.0 0.29 10.8 2.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|304314671|ref|YP_003849818.1| - 0.19 11.5 2.5 0.53 10.1 1.8 1.7 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-C4H2 PF10146.4 gi|304314671|ref|YP_003849818.1| - 0.2 11.6 0.7 0.37 10.7 0.4 1.4 2 0 0 2 2 2 0 Zinc finger-containing protein OrfB_Zn_ribbon PF07282.6 gi|304314671|ref|YP_003849818.1| - 0.31 10.7 7.4 0.048 13.3 2.1 1.9 2 1 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|304314671|ref|YP_003849818.1| - 0.44 9.9 6.6 0.13 11.6 1.7 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Herpes_UL49_1 PF03117.9 gi|304314671|ref|YP_003849818.1| - 0.61 9.1 2.8 1.2 8.2 2.0 1.5 1 1 0 1 1 1 0 UL49 family DNA_RNApol_7kD PF03604.8 gi|304314671|ref|YP_003849818.1| - 0.78 9.2 2.8 3 7.4 2.0 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|304314671|ref|YP_003849818.1| - 2.1 7.9 7.0 3.1 7.3 0.1 2.5 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PMBR PF09373.5 gi|304314672|ref|YP_003849819.1| - 9.5e-16 56.9 0.0 1.5e-09 37.3 0.0 2.7 3 0 0 3 3 3 2 Pseudomurein-binding repeat Zn-ribbon_8 PF09723.5 gi|304314674|ref|YP_003849821.1| - 0.0018 18.2 1.8 0.52 10.2 0.3 2.1 2 0 0 2 2 2 2 Zinc ribbon domain DUF35_N PF12172.3 gi|304314674|ref|YP_003849821.1| - 0.0022 17.8 1.8 0.18 11.7 0.1 2.1 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|304314674|ref|YP_003849821.1| - 0.0025 17.2 2.9 0.65 9.5 0.1 2.2 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit RNHCP PF12647.2 gi|304314674|ref|YP_003849821.1| - 0.015 15.0 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 RNHCP domain Desulfoferrod_N PF06397.7 gi|304314674|ref|YP_003849821.1| - 0.017 14.4 0.9 2.4 7.6 0.1 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RecR PF02132.10 gi|304314674|ref|YP_003849821.1| - 0.039 13.4 0.5 2 7.8 0.0 2.1 2 0 0 2 2 2 0 RecR protein Rubredoxin PF00301.15 gi|304314674|ref|YP_003849821.1| - 0.06 13.2 1.0 5.4 6.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin C1_1 PF00130.17 gi|304314674|ref|YP_003849821.1| - 0.08 12.6 0.1 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.1 gi|304314674|ref|YP_003849821.1| - 0.096 12.4 1.4 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|304314674|ref|YP_003849821.1| - 0.096 12.9 0.3 0.12 12.6 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar BIR PF00653.16 gi|304314674|ref|YP_003849821.1| - 0.11 12.9 0.3 0.15 12.4 0.0 1.4 2 0 0 2 2 1 0 Inhibitor of Apoptosis domain TFIIS_C PF01096.13 gi|304314674|ref|YP_003849821.1| - 0.11 12.0 0.7 0.85 9.3 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|304314674|ref|YP_003849821.1| - 0.13 11.8 1.5 3.9 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|304314674|ref|YP_003849821.1| - 0.13 11.9 0.9 11 5.7 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger A2L_zn_ribbon PF08792.5 gi|304314674|ref|YP_003849821.1| - 0.15 11.5 1.6 7.4 6.1 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|304314674|ref|YP_003849821.1| - 0.21 11.2 1.2 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|304314674|ref|YP_003849821.1| - 0.23 11.5 1.8 4.5 7.3 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|304314674|ref|YP_003849821.1| - 0.41 10.4 3.2 1.5 8.6 2.2 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|304314674|ref|YP_003849821.1| - 0.42 9.9 2.8 5.7 6.3 1.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|304314674|ref|YP_003849821.1| - 0.7 9.5 2.5 3.8 7.2 1.6 2.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-CCHC_6 PF15288.1 gi|304314674|ref|YP_003849821.1| - 1.1 8.9 3.8 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle DUF169 PF02596.10 gi|304314675|ref|YP_003849822.1| - 1.5e-70 236.9 0.1 1.7e-70 236.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 RVT_3 PF13456.1 gi|304314676|ref|YP_003849823.1| - 0.00045 19.9 0.1 0.00056 19.6 0.1 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like DUF16 PF01519.11 gi|304314676|ref|YP_003849823.1| - 0.017 15.3 0.3 0.021 15.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF1268 PF06896.6 gi|304314676|ref|YP_003849823.1| - 0.065 13.5 3.9 0.073 13.4 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1268) Mei5 PF10376.4 gi|304314676|ref|YP_003849823.1| - 0.11 12.0 0.2 0.11 12.0 0.1 1.4 2 0 0 2 2 2 0 Double-strand recombination repair protein zf-C4H2 PF10146.4 gi|304314676|ref|YP_003849823.1| - 0.58 10.1 3.1 0.65 9.9 2.1 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Tropomyosin_1 PF12718.2 gi|304314676|ref|YP_003849823.1| - 1.2 8.9 7.6 1.8 8.4 5.3 1.3 1 1 0 1 1 1 0 Tropomyosin like Vmethyltransf_C PF08456.5 gi|304314676|ref|YP_003849823.1| - 1.2 8.4 3.9 7.4 5.9 0.3 2.0 1 1 1 2 2 2 0 Viral methyltransferase C-terminal NTP_transf_3 PF12804.2 gi|304314677|ref|YP_003849824.1| - 1.2e-21 77.4 0.3 1.4e-21 77.2 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|304314677|ref|YP_003849824.1| - 2.2e-05 24.0 0.1 2.9e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|304314677|ref|YP_003849824.1| - 0.00072 19.2 0.0 0.00096 18.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|304314677|ref|YP_003849824.1| - 0.0025 17.1 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|304314677|ref|YP_003849824.1| - 0.0045 16.6 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 VanW PF04294.8 gi|304314678|ref|YP_003849825.1| - 0.014 14.5 0.0 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 VanW like protein Mur_ligase_M PF08245.7 gi|304314679|ref|YP_003849826.1| - 1.4e-51 175.1 0.0 7.4e-26 91.3 0.0 3.2 3 2 0 3 3 2 2 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|304314679|ref|YP_003849826.1| - 1.6e-21 76.1 0.1 1.3e-09 37.9 0.0 3.8 4 0 0 4 4 4 2 Mur ligase family, glutamate ligase domain 2-Hacid_dh_C PF02826.14 gi|304314679|ref|YP_003849826.1| - 5.6e-06 25.6 0.0 0.13 11.3 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|304314679|ref|YP_003849826.1| - 0.00014 21.8 0.0 0.19 11.6 0.0 2.9 2 0 0 2 2 2 2 TrkA-N domain AdoHcyase_NAD PF00670.16 gi|304314679|ref|YP_003849826.1| - 0.00017 21.5 0.1 0.093 12.5 0.1 3.3 2 1 1 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|304314679|ref|YP_003849826.1| - 0.00019 21.2 0.0 0.041 13.7 0.0 3.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|304314679|ref|YP_003849826.1| - 0.00041 20.7 0.5 0.039 14.3 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|304314679|ref|YP_003849826.1| - 0.00078 18.8 0.0 0.98 8.7 0.0 3.4 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|304314679|ref|YP_003849826.1| - 0.00086 18.9 0.0 0.055 13.0 0.0 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.20 gi|304314679|ref|YP_003849826.1| - 0.001 19.0 0.1 0.36 10.7 0.0 2.7 2 0 0 2 2 2 1 short chain dehydrogenase ELFV_dehydrog PF00208.16 gi|304314679|ref|YP_003849826.1| - 0.0015 18.1 0.0 0.24 10.9 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.1 gi|304314679|ref|YP_003849826.1| - 0.0031 17.5 1.9 0.17 11.8 0.0 3.5 3 0 0 3 3 3 1 NADH(P)-binding F420_oxidored PF03807.12 gi|304314679|ref|YP_003849826.1| - 0.0035 17.7 0.2 0.75 10.2 0.0 3.7 5 0 0 5 5 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|304314679|ref|YP_003849826.1| - 0.0074 16.3 0.4 0.88 9.6 0.0 3.5 4 1 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|304314679|ref|YP_003849826.1| - 0.034 14.4 0.0 1.6 9.0 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain Zn_Tnp_IS1595 PF12760.2 gi|304314679|ref|YP_003849826.1| - 0.035 13.9 1.8 0.086 12.6 1.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain NAD_binding_8 PF13450.1 gi|304314679|ref|YP_003849826.1| - 0.039 13.9 0.0 9 6.4 0.0 3.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|304314679|ref|YP_003849826.1| - 0.041 12.9 0.1 0.37 9.7 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.16 gi|304314679|ref|YP_003849826.1| - 0.042 13.6 1.5 6.9 6.5 0.1 2.9 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|304314679|ref|YP_003849826.1| - 0.046 13.3 0.0 13 5.4 0.0 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|304314679|ref|YP_003849826.1| - 0.059 12.8 0.0 1.3 8.5 0.0 3.0 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.16 gi|304314679|ref|YP_003849826.1| - 0.089 12.2 0.1 0.23 10.8 0.0 1.7 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.18 gi|304314679|ref|YP_003849826.1| - 0.1 12.3 0.0 5.5 6.6 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SRP54 PF00448.17 gi|304314679|ref|YP_003849826.1| - 0.27 10.6 2.1 16 4.8 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Mur_ligase_M PF08245.7 gi|304314680|ref|YP_003849827.1| - 1.6e-24 86.9 0.0 6.4e-24 85.0 0.0 1.9 2 1 1 3 3 3 1 Mur ligase middle domain NAD_binding_10 PF13460.1 gi|304314680|ref|YP_003849827.1| - 0.0045 17.0 0.1 0.014 15.4 0.1 1.8 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|304314680|ref|YP_003849827.1| - 0.043 13.6 0.0 0.11 12.3 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|304314680|ref|YP_003849827.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Mur_ligase_C PF02875.16 gi|304314680|ref|YP_003849827.1| - 0.055 13.5 0.0 1.6 8.8 0.0 3.1 4 0 0 4 4 4 0 Mur ligase family, glutamate ligase domain Oxidored_nitro PF00148.14 gi|304314680|ref|YP_003849827.1| - 0.063 11.9 0.0 0.13 10.9 0.0 1.5 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase CbiA PF01656.18 gi|304314680|ref|YP_003849827.1| - 0.11 11.8 0.4 0.61 9.4 0.3 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain IncA PF04156.9 gi|304314681|ref|YP_003849828.1| - 0.0028 17.2 0.0 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 IncA protein EphA2_TM PF14575.1 gi|304314681|ref|YP_003849828.1| - 0.0045 17.3 0.1 0.0054 17.0 0.0 1.1 1 0 0 1 1 1 1 Ephrin type-A receptor 2 transmembrane domain Herpes_gE PF02480.11 gi|304314681|ref|YP_003849828.1| - 0.0084 14.4 0.0 0.009 14.3 0.0 1.0 1 0 0 1 1 1 1 Alphaherpesvirus glycoprotein E TMEM154 PF15102.1 gi|304314681|ref|YP_003849828.1| - 0.011 15.3 0.1 0.012 15.2 0.1 1.1 1 0 0 1 1 1 0 TMEM154 protein family DAP10 PF07213.6 gi|304314681|ref|YP_003849828.1| - 0.015 15.0 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 DAP10 membrane protein CcmD PF04995.9 gi|304314681|ref|YP_003849828.1| - 0.018 14.7 0.1 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) Protocadherin PF08374.6 gi|304314681|ref|YP_003849828.1| - 0.025 14.2 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Protocadherin MSC PF09402.5 gi|304314681|ref|YP_003849828.1| - 0.031 13.0 0.0 0.033 12.8 0.0 1.0 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain UPF0104 PF03706.8 gi|304314681|ref|YP_003849828.1| - 0.031 13.5 0.0 0.032 13.5 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF3357 PF11837.3 gi|304314681|ref|YP_003849828.1| - 0.033 14.0 0.0 0.034 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) CD20 PF04103.10 gi|304314681|ref|YP_003849828.1| - 0.033 14.1 0.0 0.033 14.1 0.0 1.0 1 0 0 1 1 1 0 CD20-like family BRE1 PF08647.6 gi|304314681|ref|YP_003849828.1| - 0.038 13.9 0.0 0.046 13.6 0.0 1.1 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase Adeno_E3_CR2 PF02439.10 gi|304314681|ref|YP_003849828.1| - 0.04 13.4 0.1 0.053 13.0 0.1 1.2 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 DUF2254 PF10011.4 gi|304314681|ref|YP_003849828.1| - 0.043 12.2 0.0 0.043 12.2 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Rifin_STEVOR PF02009.11 gi|304314681|ref|YP_003849828.1| - 0.052 13.1 0.0 0.061 12.9 0.0 1.1 1 0 0 1 1 1 0 Rifin/stevor family Vpu PF00558.14 gi|304314681|ref|YP_003849828.1| - 0.053 13.0 0.3 0.074 12.6 0.2 1.2 1 0 0 1 1 1 0 Vpu protein Glycophorin_A PF01102.13 gi|304314681|ref|YP_003849828.1| - 0.067 12.9 0.1 0.076 12.7 0.1 1.1 1 0 0 1 1 1 0 Glycophorin A Baculo_11_kDa PF06143.6 gi|304314681|ref|YP_003849828.1| - 0.07 12.5 0.1 0.09 12.1 0.1 1.2 1 0 0 1 1 1 0 Baculovirus 11 kDa family Cytomega_UL20A PF05984.7 gi|304314681|ref|YP_003849828.1| - 0.078 13.1 0.0 0.095 12.9 0.0 1.2 1 0 0 1 1 1 0 Cytomegalovirus UL20A protein Rax2 PF12768.2 gi|304314681|ref|YP_003849828.1| - 0.079 12.1 0.1 0.095 11.9 0.0 1.0 1 0 0 1 1 1 0 Cortical protein marker for cell polarity DUF1510 PF07423.6 gi|304314681|ref|YP_003849828.1| - 0.089 12.1 0.1 0.098 12.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) CcmH PF03918.9 gi|304314681|ref|YP_003849828.1| - 0.11 11.4 0.1 0.19 10.7 0.1 1.4 1 1 0 1 1 1 0 Cytochrome C biogenesis protein DUF912 PF06024.7 gi|304314681|ref|YP_003849828.1| - 0.41 10.7 1.8 0.48 10.5 1.1 1.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) SKG6 PF08693.5 gi|304314681|ref|YP_003849828.1| - 0.98 8.7 6.9 1.4 8.2 4.8 1.2 1 0 0 1 1 1 0 Transmembrane alpha-helix domain PMSR PF01625.16 gi|304314683|ref|YP_003849830.1| - 1.8e-67 226.0 0.0 2e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Tex_N PF09371.5 gi|304314683|ref|YP_003849830.1| - 0.12 11.6 0.1 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Tex-like protein N-terminal domain POR_N PF01855.14 gi|304314684|ref|YP_003849831.1| - 2e-62 210.7 0.0 5.4e-62 209.3 0.0 1.7 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|304314684|ref|YP_003849831.1| - 2.9e-27 95.6 0.1 5.1e-27 94.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|304314684|ref|YP_003849831.1| - 0.00023 20.6 0.0 0.00071 19.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|304314685|ref|YP_003849832.1| - 5.1e-29 100.8 0.1 9e-29 100.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|304314685|ref|YP_003849832.1| - 2.3e-22 78.6 0.1 3.6e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lysine_decarbox PF03641.9 gi|304314686|ref|YP_003849833.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Possible lysine decarboxylase AAA_23 PF13476.1 gi|304314688|ref|YP_003849835.1| - 5.6e-19 69.2 21.3 5.6e-19 69.2 14.7 6.5 1 1 1 2 2 1 1 AAA domain Reo_sigmaC PF04582.7 gi|304314688|ref|YP_003849835.1| - 1.8e-06 27.4 17.6 0.0063 15.7 0.2 4.3 3 2 1 5 5 5 3 Reovirus sigma C capsid protein AAA_29 PF13555.1 gi|304314688|ref|YP_003849835.1| - 3.9e-06 26.2 0.0 7.5e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.7 gi|304314688|ref|YP_003849835.1| - 5.7e-06 26.2 18.6 0.068 12.9 0.0 6.3 1 1 4 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|304314688|ref|YP_003849835.1| - 9.9e-06 24.3 89.8 0.0047 15.4 14.5 4.2 2 1 2 4 4 4 3 AAA domain DUF3584 PF12128.3 gi|304314688|ref|YP_003849835.1| - 1.6e-05 22.5 32.6 1.6e-05 22.5 22.6 3.5 3 1 0 3 3 3 1 Protein of unknown function (DUF3584) SbcCD_C PF13558.1 gi|304314688|ref|YP_003849835.1| - 3e-05 23.8 0.0 0.00013 21.7 0.0 2.2 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit GAS PF13851.1 gi|304314688|ref|YP_003849835.1| - 5e-05 22.5 95.9 0.00055 19.1 19.4 6.4 3 2 4 7 7 7 3 Growth-arrest specific micro-tubule binding WEMBL PF05701.6 gi|304314688|ref|YP_003849835.1| - 0.00011 20.8 35.3 0.00011 20.8 24.5 3.5 2 1 1 3 3 3 2 Weak chloroplast movement under blue light IncA PF04156.9 gi|304314688|ref|YP_003849835.1| - 0.00042 19.9 95.5 50 3.4 6.3 6.6 3 2 2 5 5 5 0 IncA protein DUF904 PF06005.7 gi|304314688|ref|YP_003849835.1| - 0.00046 20.4 10.3 0.00046 20.4 7.1 9.0 3 3 3 7 7 5 2 Protein of unknown function (DUF904) AAA_27 PF13514.1 gi|304314688|ref|YP_003849835.1| - 0.00056 17.7 66.7 0.001 16.9 15.0 3.5 3 1 1 4 4 4 2 AAA domain MscS_porin PF12795.2 gi|304314688|ref|YP_003849835.1| - 0.0015 17.9 1.1 0.0015 17.9 0.8 5.2 2 2 3 5 5 5 1 Mechanosensitive ion channel porin domain FUSC PF04632.7 gi|304314688|ref|YP_003849835.1| - 0.0083 14.6 0.1 0.018 13.5 0.1 1.6 1 0 0 1 1 1 1 Fusaric acid resistance protein family AAA_25 PF13481.1 gi|304314688|ref|YP_003849835.1| - 0.023 14.0 0.3 0.21 10.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain Spc7 PF08317.6 gi|304314688|ref|YP_003849835.1| - 0.024 13.3 98.2 0.01 14.5 7.4 4.9 3 2 2 5 5 5 0 Spc7 kinetochore protein AAA_22 PF13401.1 gi|304314688|ref|YP_003849835.1| - 0.053 13.6 8.7 0.3 11.2 0.1 4.0 4 1 0 4 4 4 0 AAA domain EzrA PF06160.7 gi|304314688|ref|YP_003849835.1| - 0.99 7.5 72.7 0.055 11.6 17.4 5.3 2 2 3 5 5 5 0 Septation ring formation regulator, EzrA APG6 PF04111.7 gi|304314688|ref|YP_003849835.1| - 1.1 8.2 93.6 0.28 10.1 1.4 5.8 2 2 4 6 6 6 0 Autophagy protein Apg6 CENP-F_leu_zip PF10473.4 gi|304314688|ref|YP_003849835.1| - 1.4 8.8 108.6 0.064 13.1 7.8 5.9 3 2 3 6 6 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.6 gi|304314688|ref|YP_003849835.1| - 4.8 5.5 79.1 0.062 11.8 14.1 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF812) PspA_IM30 PF04012.7 gi|304314688|ref|YP_003849835.1| - 6.8 5.9 55.9 0.015 14.6 1.9 5.5 2 2 2 4 4 4 0 PspA/IM30 family DUF1664 PF07889.7 gi|304314688|ref|YP_003849835.1| - 8.1 6.2 56.2 0.33 10.7 3.3 7.5 3 2 3 7 7 7 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.17 gi|304314688|ref|YP_003849835.1| - 8.2 6.4 95.6 0.26 11.3 8.2 7.1 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain DUF1843 PF08898.5 gi|304314688|ref|YP_003849835.1| - 8.7 6.4 23.7 2.4 8.2 0.0 6.5 6 0 0 6 6 5 0 Domain of unknown function (DUF1843) DUF4200 PF13863.1 gi|304314688|ref|YP_003849835.1| - 10 6.1 110.7 0.34 10.8 13.2 7.9 3 2 5 8 8 8 0 Domain of unknown function (DUF4200) Metallophos PF00149.23 gi|304314689|ref|YP_003849836.1| - 1.3e-15 57.3 0.0 4.5e-15 55.5 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|304314689|ref|YP_003849836.1| - 2.2e-13 50.3 0.0 3.5e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF87 PF01935.12 gi|304314690|ref|YP_003849837.1| - 7.9e-31 107.6 0.0 1.4e-30 106.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|304314690|ref|YP_003849837.1| - 3.1e-21 76.1 0.0 3.9e-20 72.4 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|304314690|ref|YP_003849837.1| - 3.2e-06 26.7 0.0 9.2e-06 25.2 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|304314690|ref|YP_003849837.1| - 0.0046 15.6 0.0 0.12 10.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF552 PF04472.7 gi|304314690|ref|YP_003849837.1| - 0.076 12.9 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF552) NurA PF09376.5 gi|304314691|ref|YP_003849838.1| - 1.5e-07 31.1 0.0 4e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 NurA domain YbjQ_1 PF01906.12 gi|304314692|ref|YP_003849839.1| - 2.2e-35 121.2 0.4 2.4e-35 121.0 0.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF1156 PF06634.7 gi|304314695|ref|YP_003849842.1| - 8.9e-24 83.0 0.2 2.2e-23 81.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|304314695|ref|YP_003849842.1| - 2.3e-13 50.1 0.1 8.5e-12 45.1 0.1 2.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304314695|ref|YP_003849842.1| - 2.7e-07 30.9 0.0 0.0048 17.3 0.0 2.9 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|304314695|ref|YP_003849842.1| - 1.2e-05 24.8 0.0 0.11 11.8 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|304314695|ref|YP_003849842.1| - 7.2e-05 22.4 0.0 0.21 11.1 0.0 3.1 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|304314695|ref|YP_003849842.1| - 0.00014 21.4 0.0 0.014 14.8 0.0 2.3 2 0 0 2 2 2 1 DNA methylase MethyltransfD12 PF02086.10 gi|304314695|ref|YP_003849842.1| - 0.044 13.2 0.1 0.67 9.3 0.0 2.3 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.1 gi|304314695|ref|YP_003849842.1| - 0.074 13.4 0.0 0.56 10.6 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain DUF3941 PF13081.1 gi|304314695|ref|YP_003849842.1| - 1.8 8.6 5.3 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3941) DUF3883 PF13020.1 gi|304314696|ref|YP_003849843.1| - 3.4e-24 84.3 0.1 9.9e-24 82.9 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.26 gi|304314696|ref|YP_003849843.1| - 3e-20 71.8 0.0 8.6e-20 70.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Helicase_C_4 PF13871.1 gi|304314696|ref|YP_003849843.1| - 0.0061 16.0 0.1 0.023 14.1 0.0 1.9 1 1 0 1 1 1 1 Helicase_C-like YqzE PF14038.1 gi|304314696|ref|YP_003849843.1| - 0.18 11.5 2.4 0.17 11.6 0.2 2.0 2 0 0 2 2 2 0 YqzE-like protein SNF2_N PF00176.18 gi|304314697|ref|YP_003849844.1| - 2e-23 82.6 0.0 2.3e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|304314697|ref|YP_003849844.1| - 1.8e-10 40.9 0.0 4.8e-10 39.5 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|304314697|ref|YP_003849844.1| - 3.4e-07 29.9 0.0 6.4e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|304314697|ref|YP_003849844.1| - 1.1e-06 27.9 0.0 1.5e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.9 gi|304314697|ref|YP_003849844.1| - 9.5e-05 22.1 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Helicase AAA PF00004.24 gi|304314697|ref|YP_003849844.1| - 0.0011 19.2 1.3 0.013 15.6 0.2 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Flavi_DEAD PF07652.9 gi|304314697|ref|YP_003849844.1| - 0.0029 17.3 0.0 0.0059 16.3 0.0 1.5 1 1 0 1 1 1 1 Flavivirus DEAD domain AAA_34 PF13872.1 gi|304314697|ref|YP_003849844.1| - 0.004 15.9 0.1 0.016 14.0 0.1 1.8 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 AAA_30 PF13604.1 gi|304314697|ref|YP_003849844.1| - 0.12 11.9 0.1 0.33 10.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|304314697|ref|YP_003849844.1| - 0.13 12.0 0.0 0.44 10.3 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AA_permease_2 PF13520.1 gi|304314698|ref|YP_003849845.1| - 5.4e-52 176.7 45.2 6.6e-52 176.4 31.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|304314698|ref|YP_003849845.1| - 2e-44 151.7 41.8 2.6e-44 151.3 29.0 1.1 1 0 0 1 1 1 1 Amino acid permease TPR_11 PF13414.1 gi|304314699|ref|YP_003849846.1| - 6e-29 99.5 2.7 2.9e-10 39.6 0.0 3.7 2 1 0 3 3 3 3 TPR repeat TPR_16 PF13432.1 gi|304314699|ref|YP_003849846.1| - 3e-23 81.8 0.8 9.6e-07 29.3 0.1 4.0 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304314699|ref|YP_003849846.1| - 1.3e-22 78.0 0.1 0.0023 18.0 0.0 5.9 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|304314699|ref|YP_003849846.1| - 1.9e-22 77.8 1.7 3e-06 26.5 0.0 6.0 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304314699|ref|YP_003849846.1| - 3.3e-20 70.3 7.1 6.3e-05 22.5 0.0 5.7 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|304314699|ref|YP_003849846.1| - 1.8e-19 69.4 1.6 6.7e-07 29.1 0.0 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304314699|ref|YP_003849846.1| - 6.6e-17 59.9 0.9 0.0077 15.9 0.0 5.4 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304314699|ref|YP_003849846.1| - 7.4e-17 60.3 2.9 0.01 16.3 0.1 5.6 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304314699|ref|YP_003849846.1| - 1.1e-15 57.6 0.0 1.7e-05 25.0 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|304314699|ref|YP_003849846.1| - 7.8e-13 48.0 1.1 0.00027 20.7 0.1 3.4 2 1 2 4 4 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|304314699|ref|YP_003849846.1| - 1.4e-08 34.7 0.0 0.011 15.8 0.0 2.9 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|304314699|ref|YP_003849846.1| - 1.9e-08 33.4 0.1 1.9 8.5 0.0 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|304314699|ref|YP_003849846.1| - 1.2e-06 28.5 0.0 3.1 8.4 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|304314699|ref|YP_003849846.1| - 2.2e-05 23.6 0.0 6.1e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|304314699|ref|YP_003849846.1| - 7.1e-05 22.8 0.0 0.17 12.0 0.0 3.3 1 1 2 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|304314699|ref|YP_003849846.1| - 0.00087 18.1 0.0 0.97 8.1 0.0 2.9 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 BTAD PF03704.12 gi|304314699|ref|YP_003849846.1| - 0.0014 18.9 0.4 2.3 8.5 0.0 2.8 2 1 0 2 2 2 2 Bacterial transcriptional activator domain ChAPs PF09295.5 gi|304314699|ref|YP_003849846.1| - 0.0039 16.0 0.0 0.024 13.4 0.0 2.0 1 1 1 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.1 gi|304314699|ref|YP_003849846.1| - 0.016 15.4 0.1 4.1 7.6 0.0 2.9 2 1 1 3 3 3 0 Alkyl sulfatase dimerisation MIT PF04212.13 gi|304314699|ref|YP_003849846.1| - 0.023 14.5 0.7 15 5.5 0.1 3.2 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|304314699|ref|YP_003849846.1| - 0.048 13.5 4.9 11 6.1 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|304314699|ref|YP_003849846.1| - 0.11 12.3 3.3 12 5.9 0.1 3.4 3 1 1 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat DUF2225 PF09986.4 gi|304314699|ref|YP_003849846.1| - 0.12 11.7 0.0 0.54 9.6 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) PPR PF01535.15 gi|304314699|ref|YP_003849846.1| - 0.13 12.2 0.1 1.4 9.0 0.0 2.6 3 0 0 3 3 2 0 PPR repeat FAT PF02259.18 gi|304314699|ref|YP_003849846.1| - 0.18 10.7 0.1 4 6.3 0.0 2.6 1 1 0 1 1 1 0 FAT domain Glyco_tranf_2_3 PF13641.1 gi|304314700|ref|YP_003849847.1| - 9.2e-50 169.5 0.9 1.7e-49 168.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Response_reg PF00072.19 gi|304314700|ref|YP_003849847.1| - 4e-47 158.8 0.4 7.7e-25 87.0 0.0 2.5 2 0 0 2 2 2 2 Response regulator receiver domain Glycos_transf_2 PF00535.21 gi|304314700|ref|YP_003849847.1| - 1.8e-31 109.0 0.2 3e-31 108.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|304314700|ref|YP_003849847.1| - 4e-31 108.2 5.4 4e-31 108.2 3.7 2.9 3 1 1 4 4 4 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|304314700|ref|YP_003849847.1| - 7.9e-16 57.8 0.1 1.9e-15 56.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|304314700|ref|YP_003849847.1| - 7.5e-11 41.6 0.0 2.8e-10 39.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|304314700|ref|YP_003849847.1| - 9.5e-05 22.6 0.0 0.00023 21.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 B12-binding PF02310.14 gi|304314700|ref|YP_003849847.1| - 0.0014 18.5 1.2 1.7 8.5 0.1 3.5 4 0 0 4 4 4 2 B12 binding domain Rossmann-like PF10727.4 gi|304314700|ref|YP_003849847.1| - 0.12 12.0 0.2 6.4 6.5 0.0 2.5 2 0 0 2 2 2 0 Rossmann-like domain GNT-I PF03071.10 gi|304314700|ref|YP_003849847.1| - 0.15 10.5 0.0 0.26 9.7 0.0 1.3 1 0 0 1 1 1 0 GNT-I family Chitin_synth_2 PF03142.10 gi|304314700|ref|YP_003849847.1| - 1.2 7.4 11.2 1 7.6 0.0 3.2 3 1 1 4 4 4 0 Chitin synthase DNA_pol_B_thumb PF14791.1 gi|304314701|ref|YP_003849848.1| - 5.2e-23 80.5 0.1 1.1e-22 79.4 0.1 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|304314701|ref|YP_003849848.1| - 6.1e-22 77.5 5.3 1.1e-20 73.5 0.2 3.9 4 0 0 4 4 4 1 Helix-hairpin-helix domain PHP PF02811.14 gi|304314701|ref|YP_003849848.1| - 4.2e-14 52.7 0.0 1.8e-13 50.6 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|304314701|ref|YP_003849848.1| - 1.8e-12 47.2 4.1 3.2e-09 36.8 0.1 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix domain DNA_pol_B_palm PF14792.1 gi|304314701|ref|YP_003849848.1| - 1.8e-07 31.2 0.0 3.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|304314701|ref|YP_003849848.1| - 1.2e-05 24.6 4.0 0.0011 18.6 0.0 3.6 4 0 0 4 4 4 1 Helix-hairpin-helix motif NTP_transf_2 PF01909.18 gi|304314701|ref|YP_003849848.1| - 2.4e-05 24.5 1.3 4.7e-05 23.6 0.1 2.1 2 0 0 2 2 2 1 Nucleotidyltransferase domain DNA_pol_lambd_f PF10391.4 gi|304314701|ref|YP_003849848.1| - 8.4e-05 22.0 0.0 0.00028 20.3 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|304314701|ref|YP_003849848.1| - 0.017 14.9 0.3 11 6.0 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|304314701|ref|YP_003849848.1| - 0.027 14.3 0.1 3.5 7.6 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus HRDC PF00570.18 gi|304314701|ref|YP_003849848.1| - 0.072 12.8 0.8 0.73 9.5 0.0 3.1 5 0 0 5 5 5 0 HRDC domain DUF3701 PF12482.3 gi|304314701|ref|YP_003849848.1| - 0.081 12.6 0.1 6.6 6.5 0.0 2.6 2 0 0 2 2 2 0 Phage integrase protein IMS_HHH PF11798.3 gi|304314701|ref|YP_003849848.1| - 0.096 12.7 0.6 45 4.3 0.0 4.2 4 0 0 4 4 4 0 IMS family HHH motif PcrB PF01884.12 gi|304314702|ref|YP_003849849.1| - 2.5e-101 337.7 0.1 2.8e-101 337.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|304314702|ref|YP_003849849.1| - 0.00012 21.4 0.1 0.00027 20.3 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|304314702|ref|YP_003849849.1| - 0.0013 17.7 0.6 0.0023 16.9 0.4 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|304314702|ref|YP_003849849.1| - 0.0018 16.8 1.2 0.004 15.7 0.2 1.8 2 0 0 2 2 2 1 Tryptophan synthase alpha chain TMP-TENI PF02581.12 gi|304314702|ref|YP_003849849.1| - 0.0089 15.1 0.0 0.65 9.0 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|304314702|ref|YP_003849849.1| - 0.037 12.8 0.4 0.087 11.6 0.2 1.6 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|304314702|ref|YP_003849849.1| - 0.048 12.7 0.0 0.068 12.2 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase B12-binding PF02310.14 gi|304314702|ref|YP_003849849.1| - 0.078 12.8 0.2 1.4 8.8 0.1 2.2 2 0 0 2 2 2 0 B12 binding domain Ribul_P_3_epim PF00834.14 gi|304314702|ref|YP_003849849.1| - 0.079 12.0 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family NanE PF04131.9 gi|304314702|ref|YP_003849849.1| - 0.085 11.8 0.4 0.93 8.4 0.1 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|304314702|ref|YP_003849849.1| - 0.12 11.2 1.4 0.16 10.8 0.1 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|304314702|ref|YP_003849849.1| - 0.33 10.0 2.8 0.78 8.7 0.3 2.2 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG zf-ribbon_3 PF13248.1 gi|304314703|ref|YP_003849850.1| - 3.9e-05 22.7 2.4 4.8e-05 22.4 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304314703|ref|YP_003849850.1| - 7.6e-05 22.0 4.2 0.0001 21.6 2.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|304314703|ref|YP_003849850.1| - 0.00024 20.8 1.0 0.00026 20.7 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L40e PF01020.12 gi|304314703|ref|YP_003849850.1| - 0.00083 18.8 5.1 0.00091 18.7 3.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-DHHC PF01529.15 gi|304314703|ref|YP_003849850.1| - 0.0029 17.0 0.9 0.003 16.9 0.7 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zf-RanBP PF00641.13 gi|304314703|ref|YP_003849850.1| - 0.0074 15.3 3.2 0.01 14.9 2.2 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DNA_RNApol_7kD PF03604.8 gi|304314703|ref|YP_003849850.1| - 0.52 9.8 5.5 1.1 8.7 3.8 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|304314703|ref|YP_003849850.1| - 0.69 9.6 3.5 1.8 8.2 1.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF326 PF03860.11 gi|304314703|ref|YP_003849850.1| - 0.71 9.7 4.4 3.6 7.5 0.1 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) DUF2082 PF09855.4 gi|304314703|ref|YP_003849850.1| - 1.1 9.1 4.2 2.4 8.0 0.3 2.1 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|304314703|ref|YP_003849850.1| - 1.3 8.7 6.4 22 4.8 4.2 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF367 PF04034.8 gi|304314704|ref|YP_003849851.1| - 5.3e-53 177.9 0.0 6.3e-53 177.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|304314704|ref|YP_003849851.1| - 3.3e-06 26.5 0.3 5.2e-06 25.9 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI VWA_2 PF13519.1 gi|304314705|ref|YP_003849852.1| - 1.7e-19 70.5 0.0 3.8e-19 69.4 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|304314705|ref|YP_003849852.1| - 2e-13 50.4 0.0 3.3e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|304314705|ref|YP_003849852.1| - 6.1e-12 45.1 0.2 2.3e-06 26.9 0.0 2.4 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_3 PF13768.1 gi|304314705|ref|YP_003849852.1| - 1.4e-09 37.8 0.0 2.6e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|304314705|ref|YP_003849852.1| - 4.4e-09 36.1 0.0 0.0003 20.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA_CoxE PF05762.9 gi|304314705|ref|YP_003849852.1| - 1.8e-06 27.2 0.2 5e-06 25.8 0.2 1.7 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MCM PF00493.18 gi|304314705|ref|YP_003849852.1| - 9.3e-06 24.6 1.7 0.041 12.6 0.0 3.4 2 2 0 3 3 3 2 MCM2/3/5 family AAA_19 PF13245.1 gi|304314705|ref|YP_003849852.1| - 0.00011 21.8 0.2 0.014 15.0 0.0 3.0 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|304314705|ref|YP_003849852.1| - 0.00026 21.1 0.5 0.0067 16.6 0.0 3.2 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|304314705|ref|YP_003849852.1| - 0.00027 21.1 0.5 0.0021 18.1 0.2 2.5 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|304314705|ref|YP_003849852.1| - 0.00031 20.7 0.0 0.0021 18.0 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.6 gi|304314705|ref|YP_003849852.1| - 0.0035 16.9 0.1 0.99 9.0 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|304314705|ref|YP_003849852.1| - 0.0041 16.5 0.0 2.6 7.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain vWA-TerF-like PF10138.4 gi|304314705|ref|YP_003849852.1| - 0.0055 16.5 0.0 0.0095 15.7 0.0 1.4 1 0 0 1 1 1 1 vWA found in TerF C terminus AAA_17 PF13207.1 gi|304314705|ref|YP_003849852.1| - 0.017 15.9 0.0 0.017 15.9 0.0 3.0 3 1 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|304314705|ref|YP_003849852.1| - 0.039 13.5 0.1 0.3 10.6 0.0 2.4 3 0 0 3 3 3 0 AAA domain CbiA PF01656.18 gi|304314705|ref|YP_003849852.1| - 0.042 13.2 0.0 0.73 9.2 0.0 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|304314705|ref|YP_003849852.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|304314705|ref|YP_003849852.1| - 0.16 11.4 0.0 0.16 11.4 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain HypA PF01155.14 gi|304314706|ref|YP_003849853.1| - 6.7e-05 22.5 2.6 7.3e-05 22.4 1.8 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family RE_MamI PF09567.5 gi|304314706|ref|YP_003849853.1| - 0.01 14.9 1.3 0.012 14.7 0.9 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease Prok-RING_1 PF14446.1 gi|304314706|ref|YP_003849853.1| - 0.04 13.6 3.9 0.04 13.6 2.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|304314706|ref|YP_003849853.1| - 0.058 13.4 3.3 0.93 9.5 0.5 2.2 2 0 0 2 2 2 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|304314706|ref|YP_003849853.1| - 0.059 12.9 6.8 1.6 8.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|304314706|ref|YP_003849853.1| - 0.069 12.7 8.3 0.31 10.7 1.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.1 gi|304314706|ref|YP_003849853.1| - 0.082 12.6 7.0 2.1 8.0 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FdhE PF04216.7 gi|304314706|ref|YP_003849853.1| - 0.16 11.6 1.3 0.15 11.7 0.9 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.2 gi|304314706|ref|YP_003849853.1| - 0.21 11.4 5.4 0.31 10.8 3.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|304314706|ref|YP_003849853.1| - 0.26 11.2 6.2 5 7.1 4.2 2.3 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|304314706|ref|YP_003849853.1| - 1.4 8.7 5.4 2 8.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3797 PF12677.2 gi|304314706|ref|YP_003849853.1| - 2 8.0 8.4 0.47 10.0 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2478 PF10649.4 gi|304314707|ref|YP_003849854.1| - 0.081 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) DUF116 PF01976.12 gi|304314708|ref|YP_003849855.1| - 1.6e-45 154.4 0.1 2e-45 154.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 TatD_DNase PF01026.16 gi|304314709|ref|YP_003849856.1| - 2.5e-26 92.4 0.0 4.7e-26 91.5 0.0 1.4 1 1 0 1 1 1 1 TatD related DNase Glyco_hydro_98M PF08306.6 gi|304314709|ref|YP_003849856.1| - 0.014 14.1 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 Amidohydro_2 PF04909.9 gi|304314709|ref|YP_003849856.1| - 0.081 12.4 0.0 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 Amidohydrolase VIT1 PF01988.14 gi|304314710|ref|YP_003849857.1| - 9.8e-33 113.4 13.8 1.8e-32 112.5 9.5 1.4 1 1 0 1 1 1 1 VIT family DUF4231 PF14015.1 gi|304314710|ref|YP_003849857.1| - 0.051 13.5 3.1 0.18 11.7 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF1361 PF07099.6 gi|304314710|ref|YP_003849857.1| - 0.095 12.5 1.6 0.13 12.0 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1361) DUF2142 PF09913.4 gi|304314710|ref|YP_003849857.1| - 0.12 11.0 5.5 0.1 11.2 3.1 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF3040 PF11239.3 gi|304314710|ref|YP_003849857.1| - 0.14 12.1 0.2 0.14 12.1 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) DUF2427 PF10348.4 gi|304314710|ref|YP_003849857.1| - 0.52 9.9 4.4 0.17 11.5 1.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF2427) Tetraspannin PF00335.15 gi|304314710|ref|YP_003849857.1| - 0.88 8.8 6.3 3.1 7.0 2.5 2.2 2 0 0 2 2 2 0 Tetraspanin family HMG-CoA_red PF00368.13 gi|304314711|ref|YP_003849858.1| - 4.8e-148 492.7 0.8 5.5e-148 492.5 0.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CoA_binding PF02629.14 gi|304314712|ref|YP_003849859.1| - 1.9e-26 92.3 0.1 5.9e-26 90.8 0.0 1.9 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|304314712|ref|YP_003849859.1| - 3e-19 69.1 0.2 4.5e-19 68.5 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|304314712|ref|YP_003849859.1| - 2.6e-11 43.2 0.0 4.2e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|304314712|ref|YP_003849859.1| - 0.00053 20.1 0.1 0.012 15.8 0.0 2.4 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|304314712|ref|YP_003849859.1| - 0.0096 16.4 0.0 0.044 14.2 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_N PF05222.10 gi|304314712|ref|YP_003849859.1| - 0.11 12.4 0.2 5.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, N-terminal domain DUF2325 PF10087.4 gi|304314712|ref|YP_003849859.1| - 0.14 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) DHquinase_I PF01487.10 gi|304314714|ref|YP_003849861.1| - 5.7e-54 183.1 0.1 6.4e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Peptidase_S24 PF00717.18 gi|304314715|ref|YP_003849862.1| - 6.4e-15 54.5 1.2 1.1e-14 53.8 0.4 1.7 2 0 0 2 2 2 1 Peptidase S24-like Ribosomal_S4e PF00900.15 gi|304314715|ref|YP_003849862.1| - 0.053 13.1 0.3 0.19 11.4 0.0 2.0 2 1 0 2 2 2 0 Ribosomal family S4e Peptidase_M48 PF01435.13 gi|304314716|ref|YP_003849863.1| - 1e-47 162.6 0.0 1.6e-47 161.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 EF-hand_5 PF13202.1 gi|304314716|ref|YP_003849863.1| - 9.8e-06 24.6 1.7 3.9e-05 22.8 0.1 2.5 2 0 0 2 2 2 1 EF hand Peptidase_M56 PF05569.6 gi|304314716|ref|YP_003849863.1| - 1.8e-05 23.8 0.0 3.1e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 EF-hand_6 PF13405.1 gi|304314716|ref|YP_003849863.1| - 0.021 14.6 0.0 1.3 9.1 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain HTH_IclR PF09339.5 gi|304314716|ref|YP_003849863.1| - 0.024 14.2 0.1 9.5 5.9 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain EF-hand_1 PF00036.27 gi|304314716|ref|YP_003849863.1| - 0.047 12.9 0.0 0.42 10.0 0.0 2.3 2 0 0 2 2 2 0 EF hand EF-hand_7 PF13499.1 gi|304314716|ref|YP_003849863.1| - 0.077 13.1 0.2 1.7 8.8 0.1 2.3 2 0 0 2 2 2 0 EF-hand domain pair DUF204 PF02659.10 gi|304314716|ref|YP_003849863.1| - 0.11 12.5 6.4 0.73 10.0 1.9 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF ABC2_membrane_4 PF12730.2 gi|304314716|ref|YP_003849863.1| - 5.9 5.9 13.2 8.2 5.5 0.2 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Big_5 PF13205.1 gi|304314717|ref|YP_003849864.1| - 2e-09 37.9 0.2 2.1e-08 34.6 0.0 2.5 3 0 0 3 3 3 1 Bacterial Ig-like domain PEP-utilizers PF00391.18 gi|304314718|ref|YP_003849865.1| - 0.058 12.9 0.3 0.16 11.5 0.2 1.9 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain GHMP_kinases_N PF00288.21 gi|304314719|ref|YP_003849866.1| - 2.2e-05 24.4 0.5 4.1e-05 23.5 0.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|304314719|ref|YP_003849866.1| - 0.0038 17.4 0.0 0.0088 16.2 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Methyltransf_18 PF12847.2 gi|304314720|ref|YP_003849867.1| - 2.7e-09 37.5 0.0 3.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|304314720|ref|YP_003849867.1| - 3.6e-08 34.1 0.0 5.6e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314720|ref|YP_003849867.1| - 2.1e-07 30.6 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|304314720|ref|YP_003849867.1| - 3.6e-07 29.3 0.1 4.8e-07 28.9 0.1 1.1 1 0 0 1 1 1 1 Fibrillarin CmcI PF04989.7 gi|304314720|ref|YP_003849867.1| - 1.4e-06 27.7 0.0 1.6e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_25 PF13649.1 gi|304314720|ref|YP_003849867.1| - 2.5e-05 24.5 0.0 3.7e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|304314720|ref|YP_003849867.1| - 0.00012 22.0 0.0 0.00016 21.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|304314720|ref|YP_003849867.1| - 0.00057 19.8 0.0 0.00073 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|304314720|ref|YP_003849867.1| - 0.00078 19.0 0.1 0.0017 17.9 0.0 1.5 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|304314720|ref|YP_003849867.1| - 0.002 17.1 0.0 0.0025 16.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|304314720|ref|YP_003849867.1| - 0.0021 18.5 0.0 0.0038 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314720|ref|YP_003849867.1| - 0.0025 18.2 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_19 PF04672.7 gi|304314720|ref|YP_003849867.1| - 0.0035 16.6 0.0 0.0048 16.2 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl methyltransferase Methyltransf_3 PF01596.12 gi|304314720|ref|YP_003849867.1| - 0.015 14.3 0.0 0.02 13.9 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase MTS PF05175.9 gi|304314720|ref|YP_003849867.1| - 0.025 13.9 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|304314720|ref|YP_003849867.1| - 0.037 13.7 0.0 0.048 13.3 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.14 gi|304314720|ref|YP_003849867.1| - 0.048 12.9 0.0 0.064 12.5 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family 3Beta_HSD PF01073.14 gi|304314720|ref|YP_003849867.1| - 0.062 11.9 0.0 0.083 11.5 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Gla PF00594.15 gi|304314720|ref|YP_003849867.1| - 0.086 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain DeoC PF01791.4 gi|304314721|ref|YP_003849868.1| - 4.5e-63 212.6 0.0 5.3e-63 212.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.6 gi|304314721|ref|YP_003849868.1| - 0.0033 16.9 0.0 0.26 10.8 0.0 2.7 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family PEP_mutase PF13714.1 gi|304314721|ref|YP_003849868.1| - 0.004 16.4 0.1 1.5 7.9 0.0 3.0 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase Dus PF01207.12 gi|304314721|ref|YP_003849868.1| - 0.0049 15.7 0.0 0.52 9.0 0.0 2.6 2 2 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|304314721|ref|YP_003849868.1| - 0.027 13.8 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|304314721|ref|YP_003849868.1| - 0.045 12.8 0.0 6.8 5.7 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|304314721|ref|YP_003849868.1| - 0.07 12.2 1.1 0.38 9.7 0.2 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHQS PF01959.11 gi|304314722|ref|YP_003849869.1| - 2.7e-154 513.1 2.6 3.1e-154 512.9 1.8 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|304314722|ref|YP_003849869.1| - 0.0007 18.8 0.0 0.017 14.3 0.0 2.3 2 0 0 2 2 2 1 Hint module TOBE_2 PF08402.5 gi|304314722|ref|YP_003849869.1| - 0.018 15.0 0.4 14 5.7 0.0 3.3 3 0 0 3 3 3 0 TOBE domain DUF2577 PF10844.3 gi|304314722|ref|YP_003849869.1| - 0.1 12.6 0.0 3.2 7.8 0.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2577) Hpr_kinase_C PF07475.7 gi|304314723|ref|YP_003849870.1| - 1.2e-06 28.0 0.0 8.6e-05 21.9 0.0 2.3 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_25 PF13481.1 gi|304314723|ref|YP_003849870.1| - 0.0007 19.0 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314723|ref|YP_003849870.1| - 0.0016 18.1 0.2 0.0038 16.9 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain PEPCK_ATP PF01293.15 gi|304314723|ref|YP_003849870.1| - 0.003 16.1 0.0 0.0038 15.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_17 PF13207.1 gi|304314723|ref|YP_003849870.1| - 0.0054 17.5 0.1 0.022 15.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|304314723|ref|YP_003849870.1| - 0.0075 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|304314723|ref|YP_003849870.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|304314723|ref|YP_003849870.1| - 0.015 15.6 0.0 0.05 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|304314723|ref|YP_003849870.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|304314723|ref|YP_003849870.1| - 0.024 14.6 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|304314723|ref|YP_003849870.1| - 0.052 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|304314723|ref|YP_003849870.1| - 0.056 13.6 0.0 0.098 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|304314723|ref|YP_003849870.1| - 0.061 13.3 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|304314723|ref|YP_003849870.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|304314723|ref|YP_003849870.1| - 0.095 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|304314723|ref|YP_003849870.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|304314723|ref|YP_003849870.1| - 0.18 11.3 0.5 0.29 10.6 0.3 1.3 1 0 0 1 1 1 0 AAA domain LigT_PEase PF02834.11 gi|304314724|ref|YP_003849871.1| - 1.8e-32 111.1 0.0 3e-15 55.9 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|304314724|ref|YP_003849871.1| - 5.3e-17 61.9 0.0 6.3e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|304314724|ref|YP_003849871.1| - 2.6e-07 30.5 0.0 9.1e-07 28.7 0.0 1.7 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|304314725|ref|YP_003849872.1| - 1.8e-43 147.0 0.0 3.1e-43 146.2 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|304314725|ref|YP_003849872.1| - 1.1e-15 57.6 0.1 5.1e-15 55.5 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain DNA_primase_S PF01896.14 gi|304314726|ref|YP_003849873.1| - 7e-13 48.6 0.0 1.2e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DNA_primase_lrg PF04104.9 gi|304314727|ref|YP_003849874.1| - 5.4e-23 81.5 0.0 1.1e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit tRNA-synt_1g PF09334.6 gi|304314728|ref|YP_003849875.1| - 1.4e-162 540.8 0.0 1.7e-162 540.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|304314728|ref|YP_003849875.1| - 1.7e-24 85.4 0.1 3.4e-24 84.5 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|304314728|ref|YP_003849875.1| - 1e-19 70.0 0.1 2.3e-07 29.2 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|304314728|ref|YP_003849875.1| - 1.1e-10 41.2 0.0 2.5e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|304314728|ref|YP_003849875.1| - 0.00011 21.9 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|304314728|ref|YP_003849875.1| - 0.0008 18.1 0.0 0.0074 15.0 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|304314728|ref|YP_003849875.1| - 0.0015 17.4 0.2 0.44 9.3 0.0 2.5 1 1 1 2 2 2 2 tRNA synthetases class I (R) DZR PF12773.2 gi|304314728|ref|YP_003849875.1| - 0.0029 17.3 7.8 0.014 15.2 5.5 2.0 1 1 1 2 2 2 2 Double zinc ribbon DALR_1 PF05746.10 gi|304314728|ref|YP_003849875.1| - 0.017 15.0 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 DALR anticodon binding domain TraE PF05309.6 gi|304314728|ref|YP_003849875.1| - 0.25 10.4 0.0 0.44 9.6 0.0 1.3 1 0 0 1 1 1 0 TraE protein HypA PF01155.14 gi|304314728|ref|YP_003849875.1| - 0.45 10.2 4.7 4 7.1 0.2 2.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|304314728|ref|YP_003849875.1| - 0.51 10.1 5.4 0.93 9.3 3.7 1.4 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|304314728|ref|YP_003849875.1| - 0.97 8.8 6.3 4.1 6.8 0.1 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|304314728|ref|YP_003849875.1| - 1.3 8.7 5.7 2.5 7.8 0.5 2.4 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.6 gi|304314728|ref|YP_003849875.1| - 2.3 8.1 7.3 1.8 8.4 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-RING_3 PF14369.1 gi|304314728|ref|YP_003849875.1| - 2.7 8.0 10.2 0.3 11.1 0.9 2.7 2 0 0 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|304314728|ref|YP_003849875.1| - 3.8 6.8 11.0 4.7 6.5 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbon domain DUF530 PF04409.7 gi|304314729|ref|YP_003849876.1| - 1.8e-186 620.2 1.9 2.1e-186 620.0 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF530) HTH_7 PF02796.10 gi|304314730|ref|YP_003849877.1| - 1.5e-12 47.1 4.6 6.3e-06 25.9 0.5 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|304314730|ref|YP_003849877.1| - 1.8e-10 40.1 0.0 1.3e-05 24.6 0.0 2.7 3 0 0 3 3 3 2 Homeodomain-like domain HTH_28 PF13518.1 gi|304314730|ref|YP_003849877.1| - 1.1e-06 28.4 0.0 0.001 19.0 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|304314730|ref|YP_003849877.1| - 1e-05 24.7 2.9 0.15 11.4 0.0 4.9 4 2 2 6 6 6 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|304314730|ref|YP_003849877.1| - 7.3e-05 22.3 1.0 0.084 12.5 0.0 3.3 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|304314730|ref|YP_003849877.1| - 0.00041 20.4 0.1 1.5 8.9 0.0 2.9 2 1 1 3 3 3 2 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|304314730|ref|YP_003849877.1| - 0.00049 19.5 0.0 0.7 9.4 0.0 2.8 3 0 0 3 3 3 2 Sigma-70, region 4 GerE PF00196.14 gi|304314730|ref|YP_003849877.1| - 0.00061 19.0 0.0 0.6 9.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|304314730|ref|YP_003849877.1| - 0.00093 18.9 0.0 1 9.2 0.0 3.1 3 1 0 3 3 3 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|304314730|ref|YP_003849877.1| - 0.004 16.6 0.0 0.32 10.5 0.0 2.5 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.1 gi|304314730|ref|YP_003849877.1| - 0.004 16.8 3.5 0.03 14.1 0.1 3.0 2 1 1 3 3 3 1 MerR HTH family regulatory protein HTH_11 PF08279.7 gi|304314730|ref|YP_003849877.1| - 0.0059 16.2 0.3 4.1 7.1 0.0 3.1 3 0 0 3 3 3 1 HTH domain HTH_17 PF12728.2 gi|304314730|ref|YP_003849877.1| - 0.0097 16.1 4.0 4.5 7.6 0.1 3.8 3 2 1 4 4 4 1 Helix-turn-helix domain DUF3071 PF11268.3 gi|304314730|ref|YP_003849877.1| - 0.01 15.5 0.1 0.29 10.8 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3071) HTH_38 PF13936.1 gi|304314730|ref|YP_003849877.1| - 0.011 15.3 0.0 0.48 10.0 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Trp_repressor PF01371.14 gi|304314730|ref|YP_003849877.1| - 0.04 13.8 0.1 2.4 8.1 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein DUF1699 PF08004.6 gi|304314730|ref|YP_003849877.1| - 0.086 12.3 0.3 1.7 8.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1699) Glycos_transf_4 PF00953.16 gi|304314731|ref|YP_003849878.1| - 3.2e-30 105.0 18.6 3.2e-30 105.0 12.9 2.3 2 2 0 2 2 2 1 Glycosyl transferase family 4 DUF3278 PF11683.3 gi|304314731|ref|YP_003849878.1| - 2.6 8.0 7.6 1.2 9.0 0.0 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF3278) MtrG PF04210.8 gi|304314731|ref|YP_003849878.1| - 7.7 6.2 9.2 0.81 9.4 0.5 3.3 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G TPR_12 PF13424.1 gi|304314732|ref|YP_003849879.1| - 7e-20 70.7 9.0 1.9e-11 43.7 1.2 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304314732|ref|YP_003849879.1| - 4.9e-12 44.8 2.2 0.043 13.7 0.0 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|304314732|ref|YP_003849879.1| - 1.6e-10 40.4 3.9 0.02 14.5 0.1 3.4 2 1 0 3 3 3 3 TPR repeat TPR_7 PF13176.1 gi|304314732|ref|YP_003849879.1| - 5.4e-09 35.1 5.7 0.00074 19.1 0.1 4.4 6 0 0 6 6 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304314732|ref|YP_003849879.1| - 7.4e-09 34.7 9.0 0.012 15.2 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|304314732|ref|YP_003849879.1| - 2.9e-08 32.9 1.5 0.044 13.4 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc5 PF12862.2 gi|304314732|ref|YP_003849879.1| - 2.9e-07 30.2 2.8 0.14 11.9 0.0 4.2 2 2 1 4 4 4 3 Anaphase-promoting complex subunit 5 TPR_14 PF13428.1 gi|304314732|ref|YP_003849879.1| - 3.2e-07 30.3 0.5 0.22 12.2 0.1 4.7 3 2 2 5 5 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304314732|ref|YP_003849879.1| - 3.7e-06 27.4 0.9 0.13 12.9 0.1 4.0 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304314732|ref|YP_003849879.1| - 3.5e-05 24.0 3.1 0.023 15.0 0.1 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|304314732|ref|YP_003849879.1| - 0.00012 22.0 2.9 0.011 15.6 0.2 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|304314732|ref|YP_003849879.1| - 0.0005 19.4 5.4 0.34 10.2 0.3 3.4 2 1 1 3 3 3 2 26S proteasome subunit RPN7 Apc3 PF12895.2 gi|304314732|ref|YP_003849879.1| - 0.00071 19.6 2.1 0.23 11.6 0.1 2.9 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|304314732|ref|YP_003849879.1| - 0.0066 16.3 0.0 0.72 9.8 0.1 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat Laminin_II PF06009.7 gi|304314732|ref|YP_003849879.1| - 0.01 15.6 1.0 0.029 14.1 0.7 1.8 1 0 0 1 1 1 0 Laminin Domain II TPR_6 PF13174.1 gi|304314732|ref|YP_003849879.1| - 0.013 15.8 8.7 2.2 8.9 0.1 5.2 5 1 0 5 5 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|304314732|ref|YP_003849879.1| - 0.021 14.7 2.6 13 5.7 0.0 4.2 3 1 1 4 4 4 0 MIT (microtubule interacting and transport) domain DUF2600 PF10776.4 gi|304314732|ref|YP_003849879.1| - 0.024 13.4 0.7 0.078 11.8 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2600) COMP PF11598.3 gi|304314732|ref|YP_003849879.1| - 0.041 13.9 0.1 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein PPR PF01535.15 gi|304314732|ref|YP_003849879.1| - 0.048 13.6 2.6 37 4.6 0.0 4.4 4 0 0 4 4 4 0 PPR repeat TPR_20 PF14561.1 gi|304314732|ref|YP_003849879.1| - 0.11 12.6 3.0 5 7.3 0.1 3.3 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF4319 PF14203.1 gi|304314732|ref|YP_003849879.1| - 0.28 10.7 7.9 16 5.1 0.0 4.7 5 1 0 5 5 5 0 Domain of unknown function (DUF4319) MtrA PF04208.9 gi|304314732|ref|YP_003849879.1| - 0.28 10.5 1.7 2.5 7.5 0.0 2.7 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit A GreA_GreB_N PF03449.10 gi|304314732|ref|YP_003849879.1| - 0.42 10.6 10.6 1.2 9.1 0.5 3.0 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal AAA_21 PF13304.1 gi|304314732|ref|YP_003849879.1| - 0.79 9.6 4.4 2.2 8.1 3.0 1.8 1 1 0 1 1 1 0 AAA domain DUF2225 PF09986.4 gi|304314732|ref|YP_003849879.1| - 0.93 8.9 6.9 3.2 7.1 0.6 2.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) EcoEI_R_C PF08463.5 gi|304314732|ref|YP_003849879.1| - 9.6 6.0 11.0 1.2e+02 2.4 7.6 2.7 1 1 0 1 1 1 0 EcoEI R protein C-terminal KaiC PF06745.8 gi|304314733|ref|YP_003849880.1| - 5e-18 65.0 0.0 6.7e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|304314733|ref|YP_003849880.1| - 7.1e-07 28.8 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314733|ref|YP_003849880.1| - 0.0042 16.8 0.1 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_14 PF13173.1 gi|304314733|ref|YP_003849880.1| - 0.0067 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|304314733|ref|YP_003849880.1| - 0.0096 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|304314733|ref|YP_003849880.1| - 0.011 15.1 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DnaB_C PF03796.10 gi|304314733|ref|YP_003849880.1| - 0.033 13.0 0.0 0.049 12.4 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain RecA PF00154.16 gi|304314733|ref|YP_003849880.1| - 0.071 12.1 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|304314733|ref|YP_003849880.1| - 0.079 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein CobU PF02283.11 gi|304314733|ref|YP_003849880.1| - 0.08 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_35 PF14516.1 gi|304314733|ref|YP_003849880.1| - 0.099 11.2 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|304314734|ref|YP_003849881.1| - 2.7e-32 111.7 0.0 3.7e-32 111.2 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|304314734|ref|YP_003849881.1| - 9e-07 28.4 0.0 1.3e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|304314734|ref|YP_003849881.1| - 0.0011 18.1 0.1 0.0025 16.9 0.0 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|304314734|ref|YP_003849881.1| - 0.018 14.4 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MEDS PF14417.1 gi|304314734|ref|YP_003849881.1| - 0.031 13.3 0.0 0.069 12.1 0.0 1.6 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.1 gi|304314734|ref|YP_003849881.1| - 0.037 13.9 0.0 0.065 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|304314734|ref|YP_003849881.1| - 0.078 11.8 0.0 0.14 10.9 0.0 1.6 1 0 0 1 1 1 0 Rad51 AAA_24 PF13479.1 gi|304314734|ref|YP_003849881.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|304314735|ref|YP_003849882.1| - 8.4e-15 54.5 0.0 2.4e-13 49.7 0.0 2.2 1 1 1 2 2 2 1 KaiC Miro PF08477.8 gi|304314735|ref|YP_003849882.1| - 1.8e-11 44.5 0.0 3.1e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|304314735|ref|YP_003849882.1| - 2.6e-11 43.0 0.0 4.3e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.17 gi|304314735|ref|YP_003849882.1| - 3.7e-09 36.1 0.0 5.5e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Ras family GTP_EFTU PF00009.22 gi|304314735|ref|YP_003849882.1| - 1.2e-08 34.6 0.0 7.9e-08 31.9 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|304314735|ref|YP_003849882.1| - 8.2e-07 28.9 0.0 3.4e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|304314735|ref|YP_003849882.1| - 1.7e-06 27.7 0.1 0.0029 17.2 0.0 2.4 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|304314735|ref|YP_003849882.1| - 4e-05 22.9 0.0 8.5e-05 21.8 0.0 1.5 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|304314735|ref|YP_003849882.1| - 0.0049 16.7 0.1 0.011 15.6 0.1 1.6 1 1 0 1 1 1 1 Dynamin family AAA_17 PF13207.1 gi|304314735|ref|YP_003849882.1| - 0.007 17.1 0.0 0.077 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|304314735|ref|YP_003849882.1| - 0.018 14.7 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|304314735|ref|YP_003849882.1| - 0.027 14.0 0.1 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|304314735|ref|YP_003849882.1| - 0.059 12.7 0.1 6.4 6.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|304314735|ref|YP_003849882.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Gtr1_RagA PF04670.7 gi|304314735|ref|YP_003849882.1| - 0.13 11.4 0.1 0.29 10.2 0.0 1.6 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Torsin PF06309.6 gi|304314735|ref|YP_003849882.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Torsin AAA_22 PF13401.1 gi|304314735|ref|YP_003849882.1| - 0.15 12.2 0.0 0.47 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Robl_LC7 PF03259.12 gi|304314736|ref|YP_003849883.1| - 3.1e-22 77.9 0.1 3.9e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain Class_IIIsignal PF04021.7 gi|304314737|ref|YP_003849884.1| - 0.21 11.3 1.4 0.33 10.7 1.0 1.3 1 0 0 1 1 1 0 Class III signal peptide MCR_C PF04609.7 gi|304314739|ref|YP_003849886.1| - 2.3e-08 33.1 0.0 3.4e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C L27 PF02828.11 gi|304314739|ref|YP_003849886.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 L27 domain DUF131 PF01998.12 gi|304314741|ref|YP_003849888.1| - 1.8e-20 72.0 3.2 1.8e-20 72.0 2.2 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF3429 PF11911.3 gi|304314741|ref|YP_003849888.1| - 0.048 13.6 1.5 0.06 13.3 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) DUF2953 PF11167.3 gi|304314741|ref|YP_003849888.1| - 0.063 13.1 1.4 1 9.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) Bap31 PF05529.7 gi|304314741|ref|YP_003849888.1| - 0.15 11.4 0.1 0.17 11.3 0.1 1.3 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF2905 PF11146.3 gi|304314741|ref|YP_003849888.1| - 0.22 11.5 6.2 0.2 11.6 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2905) DUF973 PF06157.6 gi|304314741|ref|YP_003849888.1| - 0.23 10.4 7.0 0.31 9.9 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF872 PF05915.7 gi|304314741|ref|YP_003849888.1| - 0.56 10.0 6.0 0.096 12.5 1.0 1.8 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TctB PF07331.6 gi|304314741|ref|YP_003849888.1| - 3.1 7.4 7.8 8 6.1 5.4 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Pox_A14 PF05767.7 gi|304314741|ref|YP_003849888.1| - 3.4 7.6 8.0 3.4 7.7 0.4 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Sdh_cyt PF01127.17 gi|304314741|ref|YP_003849888.1| - 3.4 7.5 6.0 11 5.9 0.7 2.1 2 0 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF3185 PF11381.3 gi|304314741|ref|YP_003849888.1| - 5.5 6.8 12.6 0.67 9.7 3.8 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3185) dTMP_synthase PF02593.9 gi|304314742|ref|YP_003849889.1| - 3.3e-61 206.4 0.0 4.2e-61 206.0 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase Fer4_6 PF12837.2 gi|304314742|ref|YP_003849889.1| - 1.7e-06 27.5 10.0 0.0036 17.1 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|304314742|ref|YP_003849889.1| - 1.1e-05 24.7 9.2 3.9e-05 23.0 2.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314742|ref|YP_003849889.1| - 0.00013 22.3 10.2 0.003 17.8 7.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314742|ref|YP_003849889.1| - 0.0003 21.4 9.2 0.003 18.2 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304314742|ref|YP_003849889.1| - 0.00085 19.2 8.4 0.0015 18.5 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314742|ref|YP_003849889.1| - 0.0015 18.3 10.9 0.0067 16.1 1.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314742|ref|YP_003849889.1| - 0.0069 16.6 7.2 0.015 15.5 5.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314742|ref|YP_003849889.1| - 0.009 15.8 9.2 0.043 13.6 6.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314742|ref|YP_003849889.1| - 0.032 14.1 11.9 0.84 9.6 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304314742|ref|YP_003849889.1| - 0.24 11.8 12.4 1.3 9.5 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314742|ref|YP_003849889.1| - 0.33 11.3 8.8 3.1 8.2 6.1 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain TP_methylase PF00590.15 gi|304314743|ref|YP_003849890.1| - 4.9e-37 127.6 0.1 5.5e-37 127.5 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|304314743|ref|YP_003849890.1| - 0.075 13.2 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 Radical SAM superfamily NikR_C PF08753.6 gi|304314744|ref|YP_003849891.1| - 1.8e-14 53.4 0.4 2.8e-14 52.7 0.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|304314744|ref|YP_003849891.1| - 8.5e-09 34.9 0.5 1.6e-08 34.0 0.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|304314744|ref|YP_003849891.1| - 0.0015 18.6 0.5 0.0028 17.7 0.2 1.7 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0156) DUF1837 PF08878.6 gi|304314744|ref|YP_003849891.1| - 0.015 14.8 0.2 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1837) Halo_GVPC PF05465.8 gi|304314744|ref|YP_003849891.1| - 0.061 13.2 0.1 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat TroA PF01297.12 gi|304314745|ref|YP_003849892.1| - 1.5e-69 234.1 0.0 1.7e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family DUF3417 PF11897.3 gi|304314745|ref|YP_003849892.1| - 0.073 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) ABC_tran PF00005.22 gi|304314746|ref|YP_003849893.1| - 2.1e-31 109.0 0.0 2.9e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314746|ref|YP_003849893.1| - 4.5e-15 56.3 0.0 7.7e-14 52.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|304314746|ref|YP_003849893.1| - 5e-05 22.6 0.0 0.089 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|304314746|ref|YP_003849893.1| - 0.0014 18.4 0.3 0.042 13.7 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|304314746|ref|YP_003849893.1| - 0.0028 16.7 0.0 0.97 8.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|304314746|ref|YP_003849893.1| - 0.0035 17.3 0.1 0.01 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|304314746|ref|YP_003849893.1| - 0.0056 17.0 0.1 0.0086 16.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|304314746|ref|YP_003849893.1| - 0.0084 15.6 0.1 0.07 12.6 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|304314746|ref|YP_003849893.1| - 0.013 14.8 0.3 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|304314746|ref|YP_003849893.1| - 0.014 14.8 0.2 0.023 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|304314746|ref|YP_003849893.1| - 0.014 15.5 0.4 0.038 14.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|304314746|ref|YP_003849893.1| - 0.016 15.0 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|304314746|ref|YP_003849893.1| - 0.041 13.2 0.2 0.34 10.2 0.0 2.4 3 1 0 3 3 3 0 AAA domain AAA PF00004.24 gi|304314746|ref|YP_003849893.1| - 0.042 14.0 1.0 0.39 10.9 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|304314746|ref|YP_003849893.1| - 0.046 12.9 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|304314746|ref|YP_003849893.1| - 0.055 13.1 0.2 0.091 12.4 0.1 1.3 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|304314746|ref|YP_003849893.1| - 0.07 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|304314746|ref|YP_003849893.1| - 0.083 11.7 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|304314746|ref|YP_003849893.1| - 0.095 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|304314746|ref|YP_003849893.1| - 0.13 10.8 0.1 0.81 8.2 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.1 gi|304314746|ref|YP_003849893.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|304314746|ref|YP_003849893.1| - 0.27 12.0 1.1 0.47 11.2 0.7 1.7 1 1 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|304314747|ref|YP_003849894.1| - 9.4e-85 283.9 28.0 1.1e-84 283.8 19.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|304314747|ref|YP_003849894.1| - 9.1e-07 27.9 28.5 2.7e-06 26.4 19.8 1.7 1 1 0 1 1 1 1 FecCD transport family DUF2642 PF10842.3 gi|304314748|ref|YP_003849895.1| - 0.024 14.1 0.1 0.035 13.5 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) HAS-barrel PF09378.5 gi|304314748|ref|YP_003849895.1| - 0.099 12.5 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 HAS barrel domain Spore_coat_CotO PF14153.1 gi|304314748|ref|YP_003849895.1| - 0.14 11.5 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Spore coat protein CotO Rib_5-P_isom_A PF06026.9 gi|304314749|ref|YP_003849896.1| - 4e-65 218.3 0.1 5e-65 218.0 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|304314749|ref|YP_003849896.1| - 2.9e-07 30.2 0.1 0.00014 21.5 0.1 2.1 1 1 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|304314749|ref|YP_003849896.1| - 0.039 12.8 0.0 0.062 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain UPF0179 PF03684.8 gi|304314750|ref|YP_003849897.1| - 8.4e-50 168.0 0.2 9.3e-50 167.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fe-ADH_2 PF13685.1 gi|304314751|ref|YP_003849898.1| - 3.3e-70 236.2 2.8 4.2e-70 235.8 2.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|304314751|ref|YP_003849898.1| - 1.5e-24 86.3 7.6 3.5e-24 85.1 5.2 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|304314751|ref|YP_003849898.1| - 4.9e-12 45.3 1.6 2.4e-11 43.0 1.1 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase tRNA-synt_2b PF00587.20 gi|304314752|ref|YP_003849899.1| - 9.8e-24 83.8 0.3 2.6e-23 82.4 0.2 1.8 2 1 1 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|304314752|ref|YP_003849899.1| - 1.7e-22 79.1 0.1 2.1e-20 72.4 0.0 2.8 3 0 0 3 3 3 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|304314752|ref|YP_003849899.1| - 3.9e-14 52.2 0.2 1.3e-13 50.6 0.1 2.0 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal CofC PF01983.11 gi|304314754|ref|YP_003849901.1| - 5e-94 313.2 0.0 5.7e-94 313.1 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|304314754|ref|YP_003849901.1| - 2.7e-10 40.5 0.0 3.9e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|304314754|ref|YP_003849901.1| - 4.6e-05 23.0 0.0 0.00013 21.5 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Phos_pyr_kin PF08543.7 gi|304314755|ref|YP_003849902.1| - 2.6e-77 259.3 0.1 3.1e-77 259.0 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|304314755|ref|YP_003849902.1| - 1e-09 37.9 0.2 1.4e-09 37.5 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|304314755|ref|YP_003849902.1| - 0.0085 15.4 0.8 0.022 14.0 0.6 1.7 1 1 0 1 1 1 1 Carbohydrate kinase Adenylsucc_synt PF00709.16 gi|304314756|ref|YP_003849903.1| - 6.3e-93 311.7 0.4 2.7e-45 154.8 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase MAF_flag10 PF01973.13 gi|304314756|ref|YP_003849903.1| - 0.015 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 Mg_chelatase PF01078.16 gi|304314757|ref|YP_003849904.1| - 5.1e-11 42.1 0.0 3.1e-09 36.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|304314757|ref|YP_003849904.1| - 0.00043 20.0 0.0 0.031 14.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|304314757|ref|YP_003849904.1| - 0.002 18.9 0.0 0.014 16.2 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA PF00004.24 gi|304314757|ref|YP_003849904.1| - 0.0031 17.7 0.1 0.021 15.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|304314757|ref|YP_003849904.1| - 0.0035 17.4 0.0 0.02 15.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|304314757|ref|YP_003849904.1| - 0.0036 16.9 0.0 0.047 13.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304314757|ref|YP_003849904.1| - 0.0045 16.7 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|304314757|ref|YP_003849904.1| - 0.0053 15.7 0.1 0.81 8.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|304314757|ref|YP_003849904.1| - 0.0053 16.1 0.4 0.024 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304314757|ref|YP_003849904.1| - 0.0072 16.6 0.0 1.1 9.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|304314757|ref|YP_003849904.1| - 0.018 15.1 0.0 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.12 gi|304314757|ref|YP_003849904.1| - 0.036 13.4 0.1 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|304314757|ref|YP_003849904.1| - 0.057 13.4 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain TIP49 PF06068.8 gi|304314757|ref|YP_003849904.1| - 0.08 11.6 0.0 0.15 10.7 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus AAA_24 PF13479.1 gi|304314757|ref|YP_003849904.1| - 0.11 12.0 0.2 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|304314757|ref|YP_003849904.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain zf-ribbon_3 PF13248.1 gi|304314759|ref|YP_003849906.1| - 9.6e-08 31.0 2.4 9.6e-08 31.0 1.6 1.8 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304314759|ref|YP_003849906.1| - 2.2e-07 30.1 5.9 2.2e-07 30.1 4.1 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|304314759|ref|YP_003849906.1| - 3.6e-06 26.7 3.9 5.6e-06 26.0 2.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|304314759|ref|YP_003849906.1| - 0.0028 17.3 3.2 0.0048 16.5 2.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|304314759|ref|YP_003849906.1| - 0.029 14.1 9.8 0.25 11.1 1.9 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Nudix_N_2 PF14803.1 gi|304314759|ref|YP_003849906.1| - 0.031 13.9 4.1 0.073 12.7 0.1 2.5 3 0 0 3 3 3 0 Nudix N-terminal GATA PF00320.22 gi|304314759|ref|YP_003849906.1| - 0.27 10.6 4.0 5.3 6.4 2.8 2.3 1 1 0 1 1 1 0 GATA zinc finger GFA PF04828.9 gi|304314759|ref|YP_003849906.1| - 0.5 10.3 3.5 1.7 8.6 2.4 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme NOB1_Zn_bind PF08772.6 gi|304314759|ref|YP_003849906.1| - 0.57 10.0 5.4 1.4 8.7 3.7 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like YhfH PF14149.1 gi|304314759|ref|YP_003849906.1| - 0.88 9.4 8.4 0.36 10.6 0.7 2.4 1 1 1 2 2 2 0 YhfH-like protein XPA_N PF01286.13 gi|304314759|ref|YP_003849906.1| - 1.3 8.7 3.8 12 5.6 0.2 2.3 2 0 0 2 2 2 0 XPA protein N-terminal zf-DHHC PF01529.15 gi|304314759|ref|YP_003849906.1| - 1.7 8.0 6.7 0.81 9.0 1.6 2.0 2 0 0 2 2 2 0 DHHC palmitoyltransferase zinc_ribbon_4 PF13717.1 gi|304314759|ref|YP_003849906.1| - 1.7 8.4 5.4 0.97 9.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|304314759|ref|YP_003849906.1| - 2 8.0 5.0 1.2 8.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_binding_1 PF01035.15 gi|304314760|ref|YP_003849907.1| - 1.3e-27 95.3 0.0 1.8e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HisKA_2 PF07568.7 gi|304314761|ref|YP_003849908.1| - 1.5e-27 95.2 6.6 4.2e-27 93.8 4.6 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|304314761|ref|YP_003849908.1| - 2.4e-17 63.2 0.0 1.8e-07 31.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|304314761|ref|YP_003849908.1| - 9.1e-15 54.4 0.1 1.9e-09 37.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|304314761|ref|YP_003849908.1| - 1.4e-13 50.7 0.0 1.2e-05 25.3 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|304314761|ref|YP_003849908.1| - 5.6e-10 38.7 0.0 8.8e-07 28.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|304314761|ref|YP_003849908.1| - 2.9e-09 36.6 0.1 6.3e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|304314761|ref|YP_003849908.1| - 2.2e-06 27.9 1.1 4.8e-06 26.9 0.7 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_3 PF08447.6 gi|304314761|ref|YP_003849908.1| - 2.5e-06 27.4 0.1 8.3e-05 22.6 0.0 2.8 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|304314761|ref|YP_003849908.1| - 5.9e-06 26.0 0.0 1.1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MgtE PF01769.11 gi|304314762|ref|YP_003849909.1| - 1.1e-25 90.4 10.9 1.9e-25 89.6 7.5 1.4 1 0 0 1 1 1 1 Divalent cation transporter CBS PF00571.23 gi|304314762|ref|YP_003849909.1| - 7.6e-18 64.0 0.6 2.3e-09 36.8 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF3584 PF12128.3 gi|304314763|ref|YP_003849910.1| - 0.00096 16.6 3.5 0.0011 16.4 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Spc7 PF08317.6 gi|304314763|ref|YP_003849910.1| - 0.0023 16.6 9.3 0.022 13.4 2.3 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|304314763|ref|YP_003849910.1| - 0.0084 13.8 14.0 0.0097 13.6 9.7 1.0 1 0 0 1 1 1 1 Myosin tail V_ATPase_I PF01496.14 gi|304314763|ref|YP_003849910.1| - 0.013 13.4 4.2 0.014 13.3 2.9 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|304314763|ref|YP_003849910.1| - 0.016 14.7 14.9 0.084 12.4 8.8 2.0 1 1 1 2 2 2 0 IncA protein DUF4200 PF13863.1 gi|304314763|ref|YP_003849910.1| - 0.029 14.3 11.1 0.32 10.9 4.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.4 gi|304314763|ref|YP_003849910.1| - 0.039 13.8 15.8 0.053 13.3 11.0 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.6 gi|304314763|ref|YP_003849910.1| - 0.039 12.4 7.4 0.066 11.7 5.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Ax_dynein_light PF10211.4 gi|304314763|ref|YP_003849910.1| - 0.054 13.3 9.9 0.096 12.5 5.4 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain FlaC_arch PF05377.6 gi|304314763|ref|YP_003849910.1| - 0.056 13.3 0.7 0.056 13.3 0.5 3.0 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) APG6 PF04111.7 gi|304314763|ref|YP_003849910.1| - 0.059 12.4 9.6 0.069 12.1 6.6 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF444 PF04285.7 gi|304314763|ref|YP_003849910.1| - 0.063 11.9 1.8 0.081 11.5 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF444) DUF745 PF05335.8 gi|304314763|ref|YP_003849910.1| - 0.068 12.6 1.6 0.08 12.4 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Transposase_31 PF04754.7 gi|304314763|ref|YP_003849910.1| - 0.086 12.1 0.2 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Putative transposase, YhgA-like Laminin_II PF06009.7 gi|304314763|ref|YP_003849910.1| - 0.098 12.4 5.5 0.13 11.9 3.8 1.2 1 0 0 1 1 1 0 Laminin Domain II TMF_DNA_bd PF12329.3 gi|304314763|ref|YP_003849910.1| - 0.11 12.3 16.8 0.3 10.9 10.7 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding CALCOCO1 PF07888.6 gi|304314763|ref|YP_003849910.1| - 0.14 10.4 8.1 0.15 10.3 5.6 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Cortex-I_coil PF09304.5 gi|304314763|ref|YP_003849910.1| - 0.15 12.1 14.3 0.071 13.1 6.6 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil AAA_27 PF13514.1 gi|304314763|ref|YP_003849910.1| - 0.15 9.6 7.2 0.17 9.5 5.0 1.0 1 0 0 1 1 1 0 AAA domain Tropomyosin_1 PF12718.2 gi|304314763|ref|YP_003849910.1| - 0.17 11.7 14.5 0.43 10.4 10.1 1.6 1 1 0 1 1 1 0 Tropomyosin like DUF972 PF06156.8 gi|304314763|ref|YP_003849910.1| - 0.21 11.9 9.4 2.3 8.5 6.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Jnk-SapK_ap_N PF09744.4 gi|304314763|ref|YP_003849910.1| - 0.23 11.4 13.3 1.1 9.2 4.6 2.0 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 ATG16 PF08614.6 gi|304314763|ref|YP_003849910.1| - 0.28 11.0 14.4 1.8 8.3 10.0 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Tropomyosin PF00261.15 gi|304314763|ref|YP_003849910.1| - 0.29 10.1 14.8 1.4 7.9 4.4 2.0 1 1 1 2 2 2 0 Tropomyosin CENP-Q PF13094.1 gi|304314763|ref|YP_003849910.1| - 0.32 11.0 8.7 0.48 10.4 6.0 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit TPR_MLP1_2 PF07926.7 gi|304314763|ref|YP_003849910.1| - 0.38 10.4 7.2 0.77 9.5 5.0 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|304314763|ref|YP_003849910.1| - 0.39 9.8 9.0 0.5 9.5 6.2 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|304314763|ref|YP_003849910.1| - 0.41 10.8 8.4 1.2 9.2 0.7 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|304314763|ref|YP_003849910.1| - 0.42 10.8 5.4 0.56 10.4 3.7 1.3 1 0 0 1 1 1 0 Syntaxin bZIP_2 PF07716.10 gi|304314763|ref|YP_003849910.1| - 0.44 10.4 15.1 2 8.2 0.7 3.5 2 1 1 3 3 3 0 Basic region leucine zipper TMF_TATA_bd PF12325.3 gi|304314763|ref|YP_003849910.1| - 0.49 10.1 19.5 0.073 12.8 8.6 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding MAD PF05557.8 gi|304314763|ref|YP_003849910.1| - 0.5 8.3 12.9 0.62 8.0 8.9 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein Snapin_Pallidin PF14712.1 gi|304314763|ref|YP_003849910.1| - 0.53 10.6 7.2 2.9 8.2 5.0 2.3 1 1 0 1 1 1 0 Snapin/Pallidin Chibby PF14645.1 gi|304314763|ref|YP_003849910.1| - 0.57 10.0 7.2 12 5.8 5.0 2.3 1 1 0 1 1 1 0 Chibby family Seryl_tRNA_N PF02403.17 gi|304314763|ref|YP_003849910.1| - 0.61 10.1 10.0 0.47 10.4 3.9 2.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4446 PF14584.1 gi|304314763|ref|YP_003849910.1| - 0.62 9.8 3.6 10 5.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) zf-C4H2 PF10146.4 gi|304314763|ref|YP_003849910.1| - 0.65 9.9 6.8 0.77 9.7 4.7 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein DUF904 PF06005.7 gi|304314763|ref|YP_003849910.1| - 0.67 10.2 17.0 0.059 13.6 6.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF904) SlyX PF04102.7 gi|304314763|ref|YP_003849910.1| - 0.71 10.2 7.5 4 7.8 5.2 2.2 1 1 0 1 1 1 0 SlyX DivIC PF04977.10 gi|304314763|ref|YP_003849910.1| - 0.84 9.1 16.3 2 7.9 0.7 3.1 1 1 2 3 3 3 0 Septum formation initiator Mnd1 PF03962.10 gi|304314763|ref|YP_003849910.1| - 0.88 9.2 7.9 1.8 8.1 5.5 1.5 1 1 0 1 1 1 0 Mnd1 family Med4 PF10018.4 gi|304314763|ref|YP_003849910.1| - 0.88 8.9 9.9 2.4 7.5 6.5 1.9 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4201 PF13870.1 gi|304314763|ref|YP_003849910.1| - 0.89 8.9 12.9 1.6 8.1 8.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) ADIP PF11559.3 gi|304314763|ref|YP_003849910.1| - 0.97 9.3 10.0 2.5 8.0 2.9 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Bacillus_HBL PF05791.6 gi|304314763|ref|YP_003849910.1| - 0.98 8.7 3.2 1.3 8.4 0.7 1.9 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Nup54 PF13874.1 gi|304314763|ref|YP_003849910.1| - 1.1 8.9 6.7 2.1 8.0 4.7 1.5 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 NTP_transf_2 PF01909.18 gi|304314763|ref|YP_003849910.1| - 1.1 9.6 3.5 4.4 7.6 2.2 2.1 1 1 0 1 1 1 0 Nucleotidyltransferase domain ERM PF00769.14 gi|304314763|ref|YP_003849910.1| - 1.2 8.6 10.3 1.7 8.1 7.2 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Med9 PF07544.8 gi|304314763|ref|YP_003849910.1| - 1.2 8.9 11.7 3.9 7.2 1.5 2.9 1 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF342 PF03961.8 gi|304314763|ref|YP_003849910.1| - 2.1 6.6 6.3 2.4 6.4 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|304314763|ref|YP_003849910.1| - 2.2 7.7 12.2 6.1 6.3 7.9 1.8 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1664 PF07889.7 gi|304314763|ref|YP_003849910.1| - 2.3 8.0 4.1 5.3 6.8 2.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF641 PF04859.7 gi|304314763|ref|YP_003849910.1| - 2.4 7.9 7.7 1.3 8.7 0.6 2.3 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Sec2p PF06428.6 gi|304314763|ref|YP_003849910.1| - 2.5 8.0 10.4 22 4.9 2.7 2.7 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DUF16 PF01519.11 gi|304314763|ref|YP_003849910.1| - 2.5 8.3 7.3 94 3.3 5.1 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 Fmp27_WPPW PF10359.4 gi|304314763|ref|YP_003849910.1| - 2.9 6.1 7.2 4.4 5.6 5.0 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.16 gi|304314763|ref|YP_003849910.1| - 3 7.8 18.0 3.4 7.6 2.9 3.9 2 1 2 4 4 4 0 bZIP transcription factor AAA_13 PF13166.1 gi|304314763|ref|YP_003849910.1| - 3.4 6.0 6.3 13 4.0 0.9 1.6 1 1 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|304314763|ref|YP_003849910.1| - 3.4 7.3 6.9 7.6 6.2 0.2 2.6 1 1 1 2 2 2 0 Prefoldin subunit Atg14 PF10186.4 gi|304314763|ref|YP_003849910.1| - 3.6 6.4 13.1 4.7 6.0 3.3 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF724 PF05266.9 gi|304314763|ref|YP_003849910.1| - 3.7 7.1 8.0 9.9 5.7 5.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Kinesin-relat_1 PF12711.2 gi|304314763|ref|YP_003849910.1| - 3.9 7.9 15.4 9.2 6.7 6.8 2.9 1 1 1 2 2 2 0 Kinesin motor Spc24 PF08286.6 gi|304314763|ref|YP_003849910.1| - 5.7 6.6 10.3 3.3 7.4 2.7 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF848 PF05852.6 gi|304314763|ref|YP_003849910.1| - 8.9 6.1 9.9 12 5.7 6.0 1.7 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF465 PF04325.8 gi|304314763|ref|YP_003849910.1| - 9.6 5.9 11.8 1.9 8.2 2.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF465) Rhodanese PF00581.15 gi|304314764|ref|YP_003849911.1| - 2.7e-35 121.1 0.0 1.5e-19 70.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Abi PF02517.11 gi|304314765|ref|YP_003849912.1| - 2.6e-18 65.9 7.4 2.6e-18 65.9 5.2 2.9 1 1 1 2 2 2 1 CAAX protease self-immunity DUF2953 PF11167.3 gi|304314767|ref|YP_003849914.1| - 5.1e-09 35.8 0.1 1.3e-08 34.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Spore_YtfJ PF09579.5 gi|304314769|ref|YP_003849916.1| - 3.1e-13 49.3 5.3 4e-13 49.0 3.7 1.1 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF11 PF01345.13 gi|304314770|ref|YP_003849917.1| - 5.7e-07 29.4 2.5 1.3e-06 28.3 1.7 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|304314770|ref|YP_003849917.1| - 6.5e-07 29.3 0.3 4.7e-06 26.5 0.0 2.0 1 1 1 2 2 2 1 CARDB TRAP_beta PF05753.9 gi|304314770|ref|YP_003849917.1| - 0.00023 20.3 0.1 0.00027 20.1 0.1 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|304314770|ref|YP_003849917.1| - 0.00069 19.6 0.2 0.36 10.8 0.0 2.8 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|304314770|ref|YP_003849917.1| - 0.046 13.7 0.1 0.96 9.5 0.0 2.7 1 1 1 2 2 2 0 Transglutaminase family, C-terminal ig like domain Arch_flagellin PF01917.11 gi|304314770|ref|YP_003849917.1| - 0.97 9.0 4.5 1.7 8.2 2.5 1.7 1 1 1 2 2 2 0 Archaebacterial flagellin GyrI-like PF06445.10 gi|304314771|ref|YP_003849918.1| - 3.2e-28 98.7 0.2 3.6e-28 98.5 0.2 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|304314771|ref|YP_003849918.1| - 3.8e-11 43.2 0.1 5.1e-11 42.7 0.1 1.2 1 1 0 1 1 1 1 Integron-associated effector binding protein SOUL PF04832.7 gi|304314771|ref|YP_003849918.1| - 0.018 14.5 0.0 5.1 6.6 0.0 2.0 2 0 0 2 2 2 0 SOUL heme-binding protein EamA PF00892.15 gi|304314772|ref|YP_003849919.1| - 2.2e-21 76.1 12.0 2.7e-21 75.9 8.3 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|304314772|ref|YP_003849919.1| - 5.2e-08 33.0 10.3 5.2e-08 33.0 7.1 1.7 1 1 1 2 2 2 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|304314772|ref|YP_003849919.1| - 1.7e-06 27.8 1.1 1.7e-06 27.8 0.7 1.6 2 0 0 2 2 2 1 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|304314772|ref|YP_003849919.1| - 1.4e-05 24.7 10.5 2.6e-05 23.9 7.3 1.3 1 1 0 1 1 1 1 Triose-phosphate Transporter family UAA PF08449.6 gi|304314772|ref|YP_003849919.1| - 0.0055 15.6 4.2 0.0081 15.1 2.7 1.3 1 1 0 1 1 1 1 UAA transporter family Multi_Drug_Res PF00893.14 gi|304314772|ref|YP_003849919.1| - 1.8 9.0 7.6 2.3 8.7 4.6 1.7 1 1 1 2 2 2 0 Small Multidrug Resistance protein SecD_SecF PF02355.11 gi|304314772|ref|YP_003849919.1| - 3.2 6.8 10.0 0.75 8.9 0.2 2.2 1 1 0 2 2 2 0 Protein export membrane protein MgtE PF01769.11 gi|304314772|ref|YP_003849919.1| - 6.3 7.0 11.3 4.1 7.7 1.7 2.1 2 0 0 2 2 2 0 Divalent cation transporter DUF805 PF05656.9 gi|304314772|ref|YP_003849919.1| - 8.7 6.2 9.7 15 5.4 6.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Epimerase PF01370.16 gi|304314773|ref|YP_003849920.1| - 1.1e-60 204.9 0.0 1.4e-60 204.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|304314773|ref|YP_003849920.1| - 1.7e-17 63.2 0.0 1.2e-16 60.4 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|304314773|ref|YP_003849920.1| - 5.6e-15 54.7 0.0 9.2e-15 54.0 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|304314773|ref|YP_003849920.1| - 1.2e-12 47.3 0.0 2e-11 43.3 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|304314773|ref|YP_003849920.1| - 1.3e-09 37.8 0.1 2.3e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|304314773|ref|YP_003849920.1| - 9.8e-09 34.8 0.0 2.2e-08 33.6 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.1 gi|304314773|ref|YP_003849920.1| - 1.9e-08 34.5 0.0 3e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|304314773|ref|YP_003849920.1| - 7.8e-07 28.2 0.0 1.6e-06 27.2 0.0 1.4 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|304314773|ref|YP_003849920.1| - 8.3e-06 25.8 0.0 1.5e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|304314773|ref|YP_003849920.1| - 0.0005 19.7 0.0 0.0077 15.9 0.0 2.2 1 1 0 1 1 1 1 KR domain AAA PF00004.24 gi|304314774|ref|YP_003849921.1| - 0.0012 19.0 0.0 0.0029 17.7 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Virul_Fac PF10139.4 gi|304314774|ref|YP_003849921.1| - 0.0014 16.6 0.0 0.0021 16.0 0.0 1.1 1 0 0 1 1 1 1 Putative bacterial virulence factor AAA_17 PF13207.1 gi|304314774|ref|YP_003849921.1| - 0.0018 19.0 0.0 0.0056 17.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain Torsin PF06309.6 gi|304314774|ref|YP_003849921.1| - 0.0025 17.7 0.0 0.0046 16.8 0.0 1.3 1 0 0 1 1 1 1 Torsin Phos_pyr_kin PF08543.7 gi|304314774|ref|YP_003849921.1| - 0.0067 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase KAP_NTPase PF07693.9 gi|304314774|ref|YP_003849921.1| - 0.0086 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain PfkB PF00294.19 gi|304314774|ref|YP_003849921.1| - 0.01 15.0 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AAA_25 PF13481.1 gi|304314774|ref|YP_003849921.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|304314774|ref|YP_003849921.1| - 0.025 14.7 0.0 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|304314774|ref|YP_003849921.1| - 0.026 14.5 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|304314774|ref|YP_003849921.1| - 0.032 14.1 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|304314774|ref|YP_003849921.1| - 0.035 13.2 0.0 0.067 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|304314774|ref|YP_003849921.1| - 0.058 12.1 0.0 0.092 11.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Abi PF02517.11 gi|304314776|ref|YP_003849923.1| - 1.5e-13 50.6 2.0 1.5e-13 50.6 1.4 2.6 2 1 0 2 2 2 1 CAAX protease self-immunity TPR_12 PF13424.1 gi|304314776|ref|YP_003849923.1| - 2.1e-13 50.0 5.9 1.2e-07 31.5 0.1 2.4 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304314776|ref|YP_003849923.1| - 5.9e-09 35.0 4.8 0.0021 17.6 0.2 3.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|304314776|ref|YP_003849923.1| - 1.3e-08 34.0 9.6 3e-05 23.4 0.2 4.1 5 0 0 5 5 4 2 Tetratricopeptide repeat SNAP PF14938.1 gi|304314776|ref|YP_003849923.1| - 1.4e-08 34.2 1.0 0.00069 18.8 0.2 2.1 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_11 PF13414.1 gi|304314776|ref|YP_003849923.1| - 1.5e-08 34.1 6.7 5e-07 29.2 0.3 2.6 3 0 0 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|304314776|ref|YP_003849923.1| - 2.9e-08 33.0 8.1 0.0016 18.1 0.3 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304314776|ref|YP_003849923.1| - 5.1e-08 32.1 1.8 0.054 13.3 0.1 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|304314776|ref|YP_003849923.1| - 7e-06 26.0 0.7 5e-05 23.3 0.1 2.3 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|304314776|ref|YP_003849923.1| - 1.5e-05 25.1 2.9 0.077 13.4 0.2 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304314776|ref|YP_003849923.1| - 0.00016 22.0 0.8 0.2 12.3 0.0 3.6 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304314776|ref|YP_003849923.1| - 0.00023 21.7 4.2 0.2 12.3 0.1 2.8 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304314776|ref|YP_003849923.1| - 0.00056 19.8 0.1 0.049 13.8 0.0 3.6 3 1 1 4 4 4 1 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|304314776|ref|YP_003849923.1| - 0.0088 15.5 2.4 0.017 14.5 0.3 2.1 2 0 0 2 2 2 1 Foie gras liver health family 1 DUF3856 PF12968.2 gi|304314776|ref|YP_003849923.1| - 0.015 15.1 0.3 1.4 8.7 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|304314776|ref|YP_003849923.1| - 0.024 14.5 1.2 3 7.7 0.1 2.6 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain NTP_transferase PF00483.18 gi|304314777|ref|YP_003849924.1| - 7.4e-26 90.9 0.0 9.8e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|304314777|ref|YP_003849924.1| - 8.2e-12 45.4 0.0 1.4e-11 44.6 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain Smr PF01713.16 gi|304314777|ref|YP_003849924.1| - 0.005 17.0 0.0 0.0099 16.0 0.0 1.5 1 0 0 1 1 1 1 Smr domain IspD PF01128.14 gi|304314777|ref|YP_003849924.1| - 0.013 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|304314777|ref|YP_003849924.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4330 PF14221.1 gi|304314778|ref|YP_003849925.1| - 0.033 14.0 0.1 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) Rib PF08428.5 gi|304314778|ref|YP_003849925.1| - 0.044 13.5 0.2 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Rib/alpha-like repeat DUF4134 PF13572.1 gi|304314779|ref|YP_003849926.1| - 0.069 13.2 3.4 0.086 12.9 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) DUF2069 PF09842.4 gi|304314779|ref|YP_003849926.1| - 0.084 12.8 0.6 0.11 12.5 0.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) UPF0104 PF03706.8 gi|304314779|ref|YP_003849926.1| - 0.14 11.3 4.7 0.16 11.2 3.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) Mem_trans PF03547.13 gi|304314779|ref|YP_003849926.1| - 0.16 10.2 4.6 0.17 10.1 3.2 1.0 1 0 0 1 1 1 0 Membrane transport protein Pneumo_NS1 PF03438.8 gi|304314779|ref|YP_003849926.1| - 0.62 9.8 3.3 0.63 9.8 2.3 1.1 1 0 0 1 1 1 0 Pneumovirus NS1 protein DUF3753 PF12575.3 gi|304314779|ref|YP_003849926.1| - 5.7 6.8 6.6 4.4 7.1 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) DUF167 PF02594.11 gi|304314780|ref|YP_003849927.1| - 2.3e-20 72.2 0.0 2.8e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF371 PF04027.8 gi|304314781|ref|YP_003849928.1| - 9.8e-51 170.8 0.1 1.1e-50 170.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Churchill PF06573.6 gi|304314781|ref|YP_003849928.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Churchill protein DUF4307 PF14155.1 gi|304314781|ref|YP_003849928.1| - 0.074 12.8 0.5 0.11 12.2 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF123 PF01986.11 gi|304314782|ref|YP_003849929.1| - 1.6e-29 101.8 0.1 2.3e-29 101.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Fer4_NifH PF00142.13 gi|304314783|ref|YP_003849930.1| - 1.2e-98 329.6 0.1 1.4e-98 329.4 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|304314783|ref|YP_003849930.1| - 1.3e-12 47.5 0.0 1.9e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|304314783|ref|YP_003849930.1| - 7.2e-06 26.0 0.0 5.6e-05 23.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|304314783|ref|YP_003849930.1| - 2.6e-05 23.4 0.0 5.7e-05 22.3 0.0 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|304314783|ref|YP_003849930.1| - 0.00067 19.1 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|304314783|ref|YP_003849930.1| - 0.0025 16.6 0.3 0.004 15.9 0.2 1.4 1 1 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|304314783|ref|YP_003849930.1| - 0.0047 16.9 0.0 0.011 15.7 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|304314783|ref|YP_003849930.1| - 0.018 15.8 0.9 0.11 13.3 0.6 2.1 1 1 1 2 2 2 0 AAA domain TPP_enzyme_N PF02776.13 gi|304314783|ref|YP_003849930.1| - 0.02 14.3 0.0 3.5 7.0 0.0 2.5 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FtsK_SpoIIIE PF01580.13 gi|304314783|ref|YP_003849930.1| - 0.021 14.3 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|304314783|ref|YP_003849930.1| - 0.024 13.4 0.0 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|304314783|ref|YP_003849930.1| - 0.039 13.5 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|304314783|ref|YP_003849930.1| - 0.039 14.2 0.0 0.082 13.1 0.0 1.6 2 0 0 2 2 2 0 ABC transporter AAA_22 PF13401.1 gi|304314783|ref|YP_003849930.1| - 0.045 13.9 0.0 0.087 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|304314783|ref|YP_003849930.1| - 0.045 13.2 0.1 0.054 12.9 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|304314783|ref|YP_003849930.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SRP54 PF00448.17 gi|304314783|ref|YP_003849930.1| - 0.061 12.7 0.0 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|304314783|ref|YP_003849930.1| - 0.071 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|304314783|ref|YP_003849930.1| - 0.16 11.3 0.0 0.48 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain CBS PF00571.23 gi|304314784|ref|YP_003849931.1| - 1.8e-39 133.2 7.0 9.2e-20 70.1 1.0 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.11 gi|304314784|ref|YP_003849931.1| - 0.0093 15.8 1.2 0.58 10.0 0.1 2.5 2 0 0 2 2 2 2 PRC-barrel domain DUF3659 PF12396.3 gi|304314784|ref|YP_003849931.1| - 0.024 14.3 1.6 0.058 13.0 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Trypsin_2 PF13365.1 gi|304314784|ref|YP_003849931.1| - 0.057 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Trypsin-like peptidase domain Peptidase_U32 PF01136.14 gi|304314785|ref|YP_003849932.1| - 3.5e-81 271.5 0.0 6.1e-81 270.7 0.0 1.4 2 0 0 2 2 2 1 Peptidase family U32 TPR_5 PF12688.2 gi|304314785|ref|YP_003849932.1| - 0.083 12.9 0.2 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Tetratrico peptide repeat GATase_6 PF13522.1 gi|304314786|ref|YP_003849933.1| - 4.9e-25 88.0 0.0 9.7e-25 87.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|304314786|ref|YP_003849933.1| - 2.7e-24 85.2 0.0 6.4e-24 84.0 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|304314786|ref|YP_003849933.1| - 2.4e-22 79.1 0.0 1.7e-15 56.6 0.0 2.8 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|304314786|ref|YP_003849933.1| - 6e-15 55.0 0.2 1.5e-14 53.7 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|304314786|ref|YP_003849933.1| - 2.5e-12 46.0 0.0 1.6e-11 43.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Toprim PF01751.17 gi|304314787|ref|YP_003849934.1| - 2.6e-07 30.5 0.7 1.4e-06 28.2 0.1 2.3 2 1 0 2 2 2 1 Toprim domain IncA PF04156.9 gi|304314787|ref|YP_003849934.1| - 1.1e-05 25.1 9.1 1.7e-05 24.5 6.3 1.2 1 0 0 1 1 1 1 IncA protein Rab5-bind PF09311.6 gi|304314787|ref|YP_003849934.1| - 6.3e-05 22.9 0.6 8.6e-05 22.5 0.4 1.2 1 0 0 1 1 1 1 Rabaptin-like protein Mod_r PF07200.8 gi|304314787|ref|YP_003849934.1| - 0.0021 17.9 5.9 0.0035 17.2 4.1 1.3 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein Toprim_4 PF13662.1 gi|304314787|ref|YP_003849934.1| - 0.0028 17.6 0.3 0.011 15.7 0.2 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|304314787|ref|YP_003849934.1| - 0.0047 17.2 0.1 0.019 15.2 0.0 2.0 2 1 0 2 2 2 1 Toprim-like Seryl_tRNA_N PF02403.17 gi|304314787|ref|YP_003849934.1| - 0.0057 16.6 7.5 0.0057 16.6 5.2 1.7 2 0 0 2 2 1 1 Seryl-tRNA synthetase N-terminal domain Toprim_3 PF13362.1 gi|304314787|ref|YP_003849934.1| - 0.006 16.8 0.2 0.021 15.0 0.0 2.0 2 0 0 2 2 2 1 Toprim domain Rootletin PF15035.1 gi|304314787|ref|YP_003849934.1| - 0.0061 16.5 3.7 0.0081 16.1 2.6 1.2 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion APG6 PF04111.7 gi|304314787|ref|YP_003849934.1| - 0.015 14.3 6.9 0.019 13.9 4.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|304314787|ref|YP_003849934.1| - 0.042 11.7 1.3 0.058 11.2 0.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|304314787|ref|YP_003849934.1| - 0.043 14.1 8.3 0.57 10.5 4.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|304314787|ref|YP_003849934.1| - 0.043 13.5 4.5 0.075 12.7 3.1 1.4 1 0 0 1 1 1 0 Laminin Domain II BicD PF09730.4 gi|304314787|ref|YP_003849934.1| - 0.053 11.8 12.8 0.07 11.4 8.9 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D TPR_MLP1_2 PF07926.7 gi|304314787|ref|YP_003849934.1| - 0.054 13.2 6.4 0.14 11.8 4.4 1.7 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ADIP PF11559.3 gi|304314787|ref|YP_003849934.1| - 0.058 13.2 4.7 0.098 12.5 3.3 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding EzrA PF06160.7 gi|304314787|ref|YP_003849934.1| - 0.062 11.4 5.1 0.1 10.7 3.5 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA GAS PF13851.1 gi|304314787|ref|YP_003849934.1| - 0.084 12.0 9.8 1.1 8.3 6.9 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Fmp27_WPPW PF10359.4 gi|304314787|ref|YP_003849934.1| - 0.098 11.0 3.0 0.14 10.5 2.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF607 PF04678.8 gi|304314787|ref|YP_003849934.1| - 0.1 12.4 1.4 3.1 7.6 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 bZIP_1 PF00170.16 gi|304314787|ref|YP_003849934.1| - 0.11 12.4 11.2 0.74 9.8 2.1 2.4 1 1 1 2 2 2 0 bZIP transcription factor ATG16 PF08614.6 gi|304314787|ref|YP_003849934.1| - 0.12 12.1 8.1 0.17 11.6 5.6 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Reo_sigmaC PF04582.7 gi|304314787|ref|YP_003849934.1| - 0.13 11.4 0.1 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DivIC PF04977.10 gi|304314787|ref|YP_003849934.1| - 0.19 11.2 10.3 1.6 8.2 0.8 2.3 1 1 1 2 2 2 0 Septum formation initiator TSC22 PF01166.13 gi|304314787|ref|YP_003849934.1| - 0.19 11.6 12.3 1.3 8.9 1.7 2.7 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF342 PF03961.8 gi|304314787|ref|YP_003849934.1| - 0.21 9.9 7.0 0.29 9.4 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Prefoldin_2 PF01920.15 gi|304314787|ref|YP_003849934.1| - 0.21 11.3 11.3 4.8 6.9 7.9 2.3 1 1 0 1 1 1 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|304314787|ref|YP_003849934.1| - 0.36 10.6 13.5 0.86 9.4 9.3 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-H PF05837.7 gi|304314787|ref|YP_003849934.1| - 0.36 11.0 5.9 0.72 10.0 4.1 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) BRE1 PF08647.6 gi|304314787|ref|YP_003849934.1| - 0.37 10.7 5.9 0.59 10.1 4.1 1.3 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase CCDC155 PF14662.1 gi|304314787|ref|YP_003849934.1| - 0.47 10.0 12.1 2 7.9 8.4 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 DUF869 PF05911.6 gi|304314787|ref|YP_003849934.1| - 0.59 8.2 12.0 0.78 7.8 8.3 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) TBPIP PF07106.8 gi|304314787|ref|YP_003849934.1| - 0.6 9.6 8.6 1.1 8.7 5.9 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HALZ PF02183.13 gi|304314787|ref|YP_003849934.1| - 0.62 9.8 11.5 3.4 7.4 0.2 3.9 2 2 2 4 4 4 0 Homeobox associated leucine zipper Prefoldin PF02996.12 gi|304314787|ref|YP_003849934.1| - 0.66 9.6 7.6 7.8 6.1 0.9 3.1 2 1 1 3 3 3 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|304314787|ref|YP_003849934.1| - 0.74 10.1 4.1 3.2 8.1 2.8 2.0 1 1 0 1 1 1 0 Snapin/Pallidin Med9 PF07544.8 gi|304314787|ref|YP_003849934.1| - 0.87 9.3 9.2 3.5 7.4 0.4 2.6 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 bZIP_2 PF07716.10 gi|304314787|ref|YP_003849934.1| - 0.99 9.2 14.8 0.38 10.6 1.3 3.0 3 1 1 4 4 2 0 Basic region leucine zipper AcylCoA_dehyd_C PF12186.3 gi|304314787|ref|YP_003849934.1| - 1.1 9.1 4.2 4.9 7.0 0.5 2.3 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase C terminal DUF1664 PF07889.7 gi|304314787|ref|YP_003849934.1| - 1.1 9.0 3.9 1.3 8.8 1.8 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|304314787|ref|YP_003849934.1| - 1.1 8.1 4.7 1.6 7.6 3.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CtIP_N PF10482.4 gi|304314787|ref|YP_003849934.1| - 1.2 8.9 10.1 5.8 6.7 1.1 2.7 1 1 1 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain Striatin PF08232.7 gi|304314787|ref|YP_003849934.1| - 1.6 9.0 8.8 0.25 11.6 1.7 2.1 1 1 1 2 2 2 0 Striatin family GrpE PF01025.14 gi|304314787|ref|YP_003849934.1| - 2.2 7.8 9.4 0.92 9.0 2.0 2.3 1 1 1 2 2 2 0 GrpE TSKS PF15358.1 gi|304314787|ref|YP_003849934.1| - 2.5 6.1 7.2 6.6 4.7 5.1 1.4 1 1 1 2 2 2 0 Testis-specific serine kinase substrate DUF4200 PF13863.1 gi|304314787|ref|YP_003849934.1| - 2.5 8.0 11.1 5.6 6.9 7.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4140 PF13600.1 gi|304314787|ref|YP_003849934.1| - 3.2 8.2 5.9 19 5.7 0.5 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Spc24 PF08286.6 gi|304314787|ref|YP_003849934.1| - 3.9 7.1 9.3 3.9 7.2 1.8 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF904 PF06005.7 gi|304314787|ref|YP_003849934.1| - 6.7 7.0 11.8 41 4.5 7.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DUF3782 PF12644.2 gi|304314787|ref|YP_003849934.1| - 9.2 6.1 8.7 2.8e+02 1.3 6.0 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Ribosomal_L37e PF01907.14 gi|304314788|ref|YP_003849935.1| - 2.3e-29 100.9 9.9 2.6e-29 100.7 6.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|304314788|ref|YP_003849935.1| - 0.01 15.6 0.7 0.013 15.3 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|304314788|ref|YP_003849935.1| - 0.035 14.1 0.9 0.038 14.0 0.6 1.2 1 0 0 1 1 1 0 Stc1 domain GCC2_GCC3 PF07699.8 gi|304314788|ref|YP_003849935.1| - 0.036 13.6 1.8 0.054 13.0 1.3 1.4 1 1 0 1 1 1 0 GCC2 and GCC3 zinc_ribbon_6 PF14599.1 gi|304314788|ref|YP_003849935.1| - 0.062 13.1 1.1 0.079 12.7 0.8 1.2 1 0 0 1 1 1 0 Zinc-ribbon HypA PF01155.14 gi|304314788|ref|YP_003849935.1| - 0.083 12.5 0.5 0.084 12.5 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|304314788|ref|YP_003849935.1| - 0.11 12.4 2.0 0.19 11.7 1.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NOB1_Zn_bind PF08772.6 gi|304314788|ref|YP_003849935.1| - 0.12 12.1 2.8 0.15 11.8 2.0 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|304314788|ref|YP_003849935.1| - 0.23 10.7 4.1 0.47 9.7 2.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|304314788|ref|YP_003849935.1| - 0.27 10.3 4.3 0.44 9.6 3.0 1.4 1 1 0 1 1 1 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.5 gi|304314788|ref|YP_003849935.1| - 0.37 10.7 2.6 3.5 7.6 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|304314788|ref|YP_003849935.1| - 0.9 9.1 3.8 1.7 8.2 2.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DUF2688 PF10892.3 gi|304314788|ref|YP_003849935.1| - 1.9 8.2 6.2 3.1 7.5 3.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-C2H2_3 PF13878.1 gi|304314788|ref|YP_003849935.1| - 2 8.0 4.1 20 4.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1595 PF12760.2 gi|304314788|ref|YP_003849935.1| - 2.1 8.2 7.4 1.1e+02 2.7 5.1 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|304314788|ref|YP_003849935.1| - 3.9 7.7 10.2 1.5 9.0 3.8 2.0 1 1 1 2 2 2 0 Ribosomal L32p protein family LSM PF01423.17 gi|304314789|ref|YP_003849936.1| - 6.9e-23 79.9 0.1 8.3e-23 79.7 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|304314789|ref|YP_003849936.1| - 0.0017 18.2 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.15 gi|304314790|ref|YP_003849937.1| - 1.1e-21 76.3 0.8 1.1e-21 76.3 0.5 1.7 2 0 0 2 2 2 1 PUA domain PDZ PF00595.19 gi|304314790|ref|YP_003849937.1| - 0.09 12.9 0.5 10 6.3 0.0 2.4 2 0 0 2 2 2 0 PDZ domain (Also known as DHR or GLGF) Creatininase PF02633.9 gi|304314791|ref|YP_003849938.1| - 2.2e-20 72.7 0.0 3.5e-20 72.0 0.0 1.3 1 1 0 1 1 1 1 Creatinine amidohydrolase Ribonuc_red_lgN PF00317.16 gi|304314792|ref|YP_003849939.1| - 6.8e-29 99.5 0.3 9.8e-29 98.9 0.2 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_lgC PF02867.10 gi|304314792|ref|YP_003849939.1| - 6.5e-06 24.9 0.0 1.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgC PF02867.10 gi|304314793|ref|YP_003849940.1| - 1.4e-124 416.6 0.0 5.2e-44 150.7 0.0 3.7 2 2 1 3 3 3 3 Ribonucleotide reductase, barrel domain Intein_splicing PF14890.1 gi|304314793|ref|YP_003849940.1| - 0.00026 20.0 0.0 0.071 11.9 0.0 2.2 2 0 0 2 2 2 2 Intein splicing domain PMT_2 PF13231.1 gi|304314794|ref|YP_003849941.1| - 3.1e-06 27.1 17.5 3.1e-06 27.1 12.1 3.6 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.4 gi|304314794|ref|YP_003849941.1| - 6.3 4.8 27.5 6.8 4.7 18.4 1.5 1 1 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF70 PF01901.11 gi|304314796|ref|YP_003849943.1| - 8.5e-93 311.0 34.6 1.1e-92 310.6 24.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF70 DEAD PF00270.24 gi|304314797|ref|YP_003849944.1| - 3.7e-27 94.8 0.0 6.8e-27 94.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|304314797|ref|YP_003849944.1| - 6.2e-12 45.2 0.0 1.3e-11 44.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|304314797|ref|YP_003849944.1| - 6.1e-07 29.4 0.0 1.8e-06 27.9 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|304314797|ref|YP_003849944.1| - 0.0047 16.2 0.0 0.0083 15.4 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain AMP-binding PF00501.23 gi|304314798|ref|YP_003849945.1| - 1.8e-111 372.4 0.0 2.2e-111 372.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|304314798|ref|YP_003849945.1| - 9.1e-16 58.5 0.1 2e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT_2 PF13279.1 gi|304314799|ref|YP_003849946.1| - 1.7e-11 44.6 0.0 2e-11 44.4 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|304314799|ref|YP_003849946.1| - 5.4e-09 36.0 0.0 8.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|304314799|ref|YP_003849946.1| - 4.9e-05 22.4 0.0 0.018 13.9 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase Cupin_2 PF07883.6 gi|304314800|ref|YP_003849947.1| - 1.7e-17 62.6 1.7 2e-17 62.4 0.4 1.7 2 0 0 2 2 2 1 Cupin domain HTH_3 PF01381.17 gi|304314800|ref|YP_003849947.1| - 1.8e-13 50.0 0.5 2.6e-13 49.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|304314800|ref|YP_003849947.1| - 2.4e-12 46.7 0.3 3.9e-12 46.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|304314800|ref|YP_003849947.1| - 1.3e-08 34.8 0.0 2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|304314800|ref|YP_003849947.1| - 4.9e-06 26.2 0.2 7.6e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|304314800|ref|YP_003849947.1| - 4e-05 22.9 0.1 7.8e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.1 gi|304314800|ref|YP_003849947.1| - 4.3e-05 23.0 0.2 6.6e-05 22.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|304314800|ref|YP_003849947.1| - 6.8e-05 22.9 0.2 9.5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Cupin_1 PF00190.17 gi|304314800|ref|YP_003849947.1| - 0.0013 18.1 0.0 0.0044 16.4 0.0 1.8 2 0 0 2 2 2 1 Cupin Sigma70_r4 PF04545.11 gi|304314800|ref|YP_003849947.1| - 0.0024 17.1 0.2 0.0048 16.1 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Cupin_6 PF12852.2 gi|304314800|ref|YP_003849947.1| - 0.032 13.8 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|304314800|ref|YP_003849947.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase HTH_11 PF08279.7 gi|304314800|ref|YP_003849947.1| - 0.094 12.3 0.2 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|304314800|ref|YP_003849947.1| - 0.1 11.9 0.1 0.27 10.6 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ammonium_transp PF00909.16 gi|304314802|ref|YP_003849949.1| - 4.2e-131 437.0 34.5 4.8e-131 436.9 23.9 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|304314803|ref|YP_003849950.1| - 1.7e-37 127.9 4.0 2e-37 127.7 2.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.3 gi|304314803|ref|YP_003849950.1| - 0.011 15.6 0.1 0.023 14.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3240) Nit_Regul_Hom PF10126.4 gi|304314803|ref|YP_003849950.1| - 0.073 12.8 0.1 1.3 8.8 0.1 2.1 1 1 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Ammonium_transp PF00909.16 gi|304314805|ref|YP_003849952.1| - 8.9e-136 452.4 37.5 1e-135 452.3 26.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|304314806|ref|YP_003849953.1| - 3e-42 143.2 2.8 3.4e-42 143.0 1.9 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PrmA PF06325.8 gi|304314806|ref|YP_003849953.1| - 0.016 14.3 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Nit_Regul_Hom PF10126.4 gi|304314806|ref|YP_003849953.1| - 0.023 14.4 0.1 0.058 13.1 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII SOR_SNZ PF01680.12 gi|304314808|ref|YP_003849955.1| - 1e-115 384.5 7.9 1.4e-115 384.1 5.5 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|304314808|ref|YP_003849955.1| - 1.3e-07 31.0 6.5 6.3e-06 25.4 0.1 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|304314808|ref|YP_003849955.1| - 0.002 17.4 0.2 0.074 12.3 0.0 2.6 3 0 0 3 3 3 1 Histidine biosynthesis protein Dus PF01207.12 gi|304314808|ref|YP_003849955.1| - 0.0042 15.9 0.1 0.8 8.4 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|304314808|ref|YP_003849955.1| - 0.0048 16.1 0.3 0.0048 16.1 0.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|304314808|ref|YP_003849955.1| - 0.011 14.7 1.1 0.099 11.6 0.0 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|304314808|ref|YP_003849955.1| - 0.013 14.5 0.1 0.047 12.7 0.0 2.0 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.11 gi|304314808|ref|YP_003849955.1| - 0.11 11.6 0.3 3.7 6.7 0.0 2.5 2 0 0 2 2 2 0 mttA/Hcf106 family PfkB PF00294.19 gi|304314810|ref|YP_003849957.1| - 2.9e-08 33.2 0.0 4.1e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase His_biosynth PF00977.16 gi|304314811|ref|YP_003849958.1| - 8.8e-36 123.2 0.0 1e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DUF2149 PF09919.4 gi|304314812|ref|YP_003849959.1| - 2.7e-31 107.5 1.0 3.1e-31 107.3 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) OSTbeta PF15048.1 gi|304314812|ref|YP_003849959.1| - 0.012 15.6 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein Sigma_reg_N PF13800.1 gi|304314812|ref|YP_003849959.1| - 0.034 14.1 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF975 PF06161.6 gi|304314812|ref|YP_003849959.1| - 0.097 12.4 0.0 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF975) UPF0542 PF15086.1 gi|304314812|ref|YP_003849959.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 MotA_ExbB PF01618.11 gi|304314813|ref|YP_003849960.1| - 4.9e-08 32.7 0.3 7.4e-08 32.1 0.2 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF2162 PF09930.4 gi|304314814|ref|YP_003849961.1| - 9.3e-72 240.7 22.1 1.1e-71 240.5 15.3 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF4134 PF13572.1 gi|304314814|ref|YP_003849961.1| - 0.0077 16.3 0.7 0.0077 16.3 0.5 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4134) DUF4231 PF14015.1 gi|304314814|ref|YP_003849961.1| - 0.024 14.6 0.9 0.024 14.6 0.6 3.0 2 2 0 2 2 2 0 Protein of unknown function (DUF4231) YoqO PF14037.1 gi|304314814|ref|YP_003849961.1| - 0.047 13.8 0.4 0.047 13.8 0.3 2.3 1 1 1 2 2 2 0 YoqO-like protein ER_lumen_recept PF00810.13 gi|304314814|ref|YP_003849961.1| - 2 8.8 6.9 23 5.4 4.8 2.1 1 1 0 1 1 1 0 ER lumen protein retaining receptor DUF1129 PF06570.6 gi|304314814|ref|YP_003849961.1| - 8 5.7 15.7 0.75 9.0 2.9 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) CobN-Mg_chel PF02514.11 gi|304314815|ref|YP_003849962.1| - 4.4e-110 368.8 0.8 5.5e-110 368.4 0.6 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.11 gi|304314816|ref|YP_003849963.1| - 5.8e-177 590.2 0.0 1.4e-98 330.6 0.0 2.2 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|304314817|ref|YP_003849964.1| - 0.0016 18.2 0.1 0.0038 17.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3479) CheZ PF04344.8 gi|304314817|ref|YP_003849964.1| - 0.046 13.3 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ HhH-GPD PF00730.20 gi|304314817|ref|YP_003849964.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein FmdE PF02663.9 gi|304314818|ref|YP_003849965.1| - 1.1e-43 148.2 0.0 3e-20 72.4 0.0 3.6 4 0 0 4 4 4 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Leucyl-specific PF14795.1 gi|304314818|ref|YP_003849965.1| - 0.2 11.5 0.0 0.48 10.3 0.0 1.6 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain NAS PF03059.11 gi|304314820|ref|YP_003849967.1| - 2e-10 40.3 0.0 2.2e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_26 PF13659.1 gi|304314820|ref|YP_003849967.1| - 0.021 14.8 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304314820|ref|YP_003849967.1| - 0.038 14.5 0.0 0.054 14.0 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain NAS PF03059.11 gi|304314821|ref|YP_003849968.1| - 2e-09 37.0 0.0 2.5e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Acetyltransf_1 PF00583.19 gi|304314822|ref|YP_003849969.1| - 3.9e-14 52.4 0.1 5.5e-14 51.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|304314822|ref|YP_003849969.1| - 9.3e-08 32.1 0.1 1.4e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|304314822|ref|YP_003849969.1| - 1.2e-06 28.6 0.0 1.6e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|304314822|ref|YP_003849969.1| - 1.2e-06 28.5 0.0 1.6e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|304314822|ref|YP_003849969.1| - 0.00079 19.2 0.0 0.00099 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|304314822|ref|YP_003849969.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3194 PF11419.3 gi|304314823|ref|YP_003849970.1| - 1.2e-28 99.1 5.6 1.3e-28 98.9 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.15 gi|304314824|ref|YP_003849971.1| - 3e-26 91.2 23.1 3.3e-26 91.1 16.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit Cortex-I_coil PF09304.5 gi|304314824|ref|YP_003849971.1| - 0.0044 17.0 18.8 0.25 11.4 5.6 2.1 1 1 1 2 2 2 2 Cortexillin I, coiled coil TMCO5 PF14992.1 gi|304314824|ref|YP_003849971.1| - 0.064 12.3 12.3 0.082 12.0 8.5 1.2 1 0 0 1 1 1 0 TMCO5 family GerE PF00196.14 gi|304314824|ref|YP_003849971.1| - 0.13 11.6 0.9 1.3 8.3 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TIR PF01582.15 gi|304314824|ref|YP_003849971.1| - 0.16 11.3 2.9 0.13 11.6 1.3 1.4 1 1 0 1 1 1 0 TIR domain DUF2089 PF09862.4 gi|304314824|ref|YP_003849971.1| - 0.2 11.4 8.0 1.9 8.3 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) DUF424 PF04242.8 gi|304314824|ref|YP_003849971.1| - 0.21 11.6 1.8 4.3 7.4 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF424) Med4 PF10018.4 gi|304314824|ref|YP_003849971.1| - 0.24 10.7 13.4 0.45 9.8 1.6 2.0 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 V_ATPase_I PF01496.14 gi|304314824|ref|YP_003849971.1| - 0.37 8.5 11.9 0.45 8.2 8.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF241 PF03087.9 gi|304314824|ref|YP_003849971.1| - 0.42 10.0 11.5 0.67 9.4 8.0 1.2 1 1 0 1 1 1 0 Arabidopsis protein of unknown function TPR_MLP1_2 PF07926.7 gi|304314824|ref|YP_003849971.1| - 0.47 10.1 15.6 0.45 10.2 2.0 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein IclR PF01614.13 gi|304314824|ref|YP_003849971.1| - 0.48 10.1 2.7 12 5.6 0.2 2.1 2 0 0 2 2 2 0 Bacterial transcriptional regulator DUF2528 PF10800.3 gi|304314824|ref|YP_003849971.1| - 0.51 10.7 3.0 1.3 9.4 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2528) DUF3450 PF11932.3 gi|304314824|ref|YP_003849971.1| - 0.55 9.4 18.3 0.029 13.6 4.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) CK2S PF15011.1 gi|304314824|ref|YP_003849971.1| - 0.57 9.9 9.3 15 5.2 6.5 2.1 1 1 0 1 1 1 0 Casein Kinase 2 substrate Laminin_II PF06009.7 gi|304314824|ref|YP_003849971.1| - 0.6 9.8 15.8 13 5.5 10.9 2.0 1 1 0 1 1 1 0 Laminin Domain II AHS1 PF02682.11 gi|304314824|ref|YP_003849971.1| - 0.86 9.0 4.3 1 8.7 3.0 1.1 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 DUF342 PF03961.8 gi|304314824|ref|YP_003849971.1| - 0.99 7.7 11.9 1.2 7.4 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) ExbD PF02472.11 gi|304314824|ref|YP_003849971.1| - 1.2 9.1 8.0 0.82 9.6 4.6 1.5 1 1 0 1 1 1 0 Biopolymer transport protein ExbD/TolR DUF87 PF01935.12 gi|304314824|ref|YP_003849971.1| - 1.2 8.9 6.7 1.5 8.6 4.7 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 TP53IP5 PF15331.1 gi|304314824|ref|YP_003849971.1| - 1.9 8.3 5.8 1.4 8.8 1.3 1.9 1 1 1 2 2 2 0 Cellular tumour antigen p53-inducible 5 HOOK PF05622.7 gi|304314824|ref|YP_003849971.1| - 1.9 6.1 18.1 2.3 5.9 12.5 1.1 1 0 0 1 1 1 0 HOOK protein DUF3552 PF12072.3 gi|304314824|ref|YP_003849971.1| - 2 7.6 18.6 2.1 7.5 3.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) YjfB_motility PF14070.1 gi|304314824|ref|YP_003849971.1| - 2.8 7.8 10.3 1.7 8.4 2.7 2.5 2 0 0 2 2 2 0 Putative motility protein NPV_P10 PF05531.7 gi|304314824|ref|YP_003849971.1| - 2.9 8.2 9.8 5.1 7.4 2.2 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein GspL_C PF12693.2 gi|304314824|ref|YP_003849971.1| - 3 7.5 12.1 36 4.0 8.4 2.0 1 1 0 1 1 1 0 GspL periplasmic domain LLC1 PF14945.1 gi|304314824|ref|YP_003849971.1| - 3.3 8.0 7.1 16 5.8 0.9 2.1 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein Prominin PF05478.6 gi|304314824|ref|YP_003849971.1| - 3.6 5.0 9.1 5 4.5 6.3 1.2 1 0 0 1 1 1 0 Prominin YPEB PF14620.1 gi|304314824|ref|YP_003849971.1| - 3.7 6.4 11.6 4.8 6.0 8.0 1.1 1 0 0 1 1 1 0 YpeB sporulation Apt1 PF10351.4 gi|304314824|ref|YP_003849971.1| - 4 6.1 11.2 4.9 5.9 7.8 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain Cas_Cas1 PF01867.11 gi|304314824|ref|YP_003849971.1| - 4.2 6.3 7.1 6 5.8 4.9 1.4 1 1 0 1 1 1 0 CRISPR associated protein Cas1 DUF3584 PF12128.3 gi|304314824|ref|YP_003849971.1| - 4.6 4.4 16.8 5.5 4.1 11.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Occludin_ELL PF07303.8 gi|304314824|ref|YP_003849971.1| - 5.8 7.7 10.2 1.8 9.3 3.6 2.0 1 1 1 2 2 2 0 Occludin homology domain IFT57 PF10498.4 gi|304314824|ref|YP_003849971.1| - 6.5 5.3 21.0 1.8 7.2 4.5 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 CDC37_N PF03234.9 gi|304314824|ref|YP_003849971.1| - 6.5 7.0 15.7 4.4 7.5 2.7 1.8 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Histone_HNS PF00816.16 gi|304314824|ref|YP_003849971.1| - 7.6 7.1 13.1 7.3 7.1 1.8 2.3 2 0 0 2 2 2 0 H-NS histone family Flagellin_N PF00669.15 gi|304314824|ref|YP_003849971.1| - 9.1 6.0 13.0 4.3 7.1 6.1 2.0 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region WXG100 PF06013.7 gi|304314824|ref|YP_003849971.1| - 9.6 6.2 14.7 2.5 8.1 4.3 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Pcc1 PF09341.5 gi|304314825|ref|YP_003849972.1| - 1.8e-17 63.1 0.3 2.1e-17 62.9 0.2 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|304314826|ref|YP_003849973.1| - 1.5e-05 24.7 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Brix domain Toluene_X PF03349.11 gi|304314826|ref|YP_003849973.1| - 0.036 12.4 0.0 0.041 12.2 0.0 1.1 1 0 0 1 1 1 0 Outer membrane protein transport protein (OMPP1/FadL/TodX) DNA_RNApol_7kD PF03604.8 gi|304314827|ref|YP_003849974.1| - 7e-05 22.2 4.7 0.00011 21.6 3.3 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Spt4 PF06093.8 gi|304314827|ref|YP_003849974.1| - 0.0037 17.0 0.3 0.0037 17.0 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|304314827|ref|YP_003849974.1| - 0.0042 16.8 1.1 0.0062 16.3 0.8 1.3 1 1 0 1 1 1 1 Double zinc ribbon RNHCP PF12647.2 gi|304314827|ref|YP_003849974.1| - 0.0082 15.9 0.1 0.0082 15.9 0.1 1.1 1 0 0 1 1 1 1 RNHCP domain Mu-like_Com PF10122.4 gi|304314827|ref|YP_003849974.1| - 0.0083 15.1 4.2 0.016 14.2 2.9 1.5 1 1 0 1 1 1 1 Mu-like prophage protein Com zf-ribbon_3 PF13248.1 gi|304314827|ref|YP_003849974.1| - 0.019 14.1 2.8 0.059 12.5 2.1 1.6 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|304314827|ref|YP_003849974.1| - 0.022 14.4 0.5 0.023 14.3 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|304314827|ref|YP_003849974.1| - 0.036 13.7 1.8 0.051 13.2 1.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|304314827|ref|YP_003849974.1| - 0.036 13.8 0.2 0.04 13.6 0.1 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF4206 PF13901.1 gi|304314827|ref|YP_003849974.1| - 0.038 13.5 0.4 0.038 13.5 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) C1_1 PF00130.17 gi|304314827|ref|YP_003849974.1| - 0.044 13.5 1.0 0.071 12.8 0.8 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RRN7 PF11781.3 gi|304314827|ref|YP_003849974.1| - 0.046 13.2 2.8 0.46 10.0 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1595 PF12760.2 gi|304314827|ref|YP_003849974.1| - 0.055 13.2 1.4 4.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-MYND PF01753.13 gi|304314827|ref|YP_003849974.1| - 0.074 12.9 1.1 0.099 12.5 0.7 1.3 1 0 0 1 1 1 0 MYND finger zinc_ribbon_2 PF13240.1 gi|304314827|ref|YP_003849974.1| - 0.078 12.4 3.6 1.4 8.5 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|304314827|ref|YP_003849974.1| - 0.098 12.2 2.6 7.9 6.1 0.3 2.3 2 1 1 3 3 2 0 zinc-ribbon domain DUF3342 PF11822.3 gi|304314827|ref|YP_003849974.1| - 0.1 11.7 0.2 0.092 11.8 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) TFIIS_C PF01096.13 gi|304314827|ref|YP_003849974.1| - 0.13 11.9 1.0 6.3 6.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|304314827|ref|YP_003849974.1| - 0.15 11.2 0.8 11 5.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|304314827|ref|YP_003849974.1| - 0.16 11.7 3.0 7.8 6.2 0.6 2.3 2 1 1 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|304314827|ref|YP_003849974.1| - 0.19 11.6 4.3 3.2 7.7 2.9 2.1 1 1 0 1 1 1 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|304314827|ref|YP_003849974.1| - 0.25 10.7 2.5 0.85 8.9 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|304314827|ref|YP_003849974.1| - 0.27 11.0 1.6 2.9 7.6 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) OrfB_Zn_ribbon PF07282.6 gi|304314827|ref|YP_003849974.1| - 0.29 10.7 1.8 0.74 9.5 1.3 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|304314827|ref|YP_003849974.1| - 0.39 10.8 2.5 0.62 10.2 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|304314827|ref|YP_003849974.1| - 0.4 10.6 4.5 1.2 9.0 3.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF329 PF03884.9 gi|304314827|ref|YP_003849974.1| - 0.43 10.1 2.4 2.7 7.5 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) RecR PF02132.10 gi|304314827|ref|YP_003849974.1| - 0.76 9.2 2.9 3.7 7.0 2.0 1.9 1 1 0 1 1 1 0 RecR protein zf-HIT PF04438.11 gi|304314827|ref|YP_003849974.1| - 1.5 8.5 9.1 9.4 5.9 6.3 2.0 1 1 0 1 1 1 0 HIT zinc finger zf-FPG_IleRS PF06827.9 gi|304314827|ref|YP_003849974.1| - 4.2 7.1 8.1 27 4.5 3.1 2.2 1 1 1 2 2 1 0 Zinc finger found in FPG and IleRS UPF0547 PF10571.4 gi|304314827|ref|YP_003849974.1| - 5.2 6.8 7.0 26 4.6 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|304314827|ref|YP_003849974.1| - 7.8 5.9 7.1 2.1 7.7 0.1 2.3 3 0 0 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37ae PF01780.14 gi|304314828|ref|YP_003849975.1| - 6.7e-36 122.0 6.1 7e-36 121.9 4.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|304314828|ref|YP_003849975.1| - 0.0044 16.6 1.4 0.0044 16.6 1.0 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|304314828|ref|YP_003849975.1| - 0.0059 16.3 3.3 0.008 15.9 2.3 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|304314828|ref|YP_003849975.1| - 0.017 14.9 1.0 0.022 14.6 0.7 1.1 1 0 0 1 1 1 0 IBR domain Rep_fac-A_C PF08646.5 gi|304314828|ref|YP_003849975.1| - 0.031 14.0 0.9 0.038 13.6 0.6 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Rad50_zn_hook PF04423.9 gi|304314828|ref|YP_003849975.1| - 0.039 13.4 0.7 0.039 13.4 0.5 1.7 2 0 0 2 2 2 0 Rad50 zinc hook motif Rubredoxin PF00301.15 gi|304314828|ref|YP_003849975.1| - 0.056 13.3 0.6 6.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zf-C2H2 PF00096.21 gi|304314828|ref|YP_003849975.1| - 0.066 13.5 1.5 9.4 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|304314828|ref|YP_003849975.1| - 0.075 13.0 3.5 3.3 7.7 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|304314828|ref|YP_003849975.1| - 0.18 11.6 2.7 1.6 8.5 2.4 1.8 1 1 1 2 2 2 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|304314828|ref|YP_003849975.1| - 0.23 11.7 5.4 4.1 7.8 0.8 2.2 1 1 1 2 2 2 0 Zinc-finger double domain DUF35_N PF12172.3 gi|304314828|ref|YP_003849975.1| - 0.27 11.1 2.9 6.3 6.8 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-BED PF02892.10 gi|304314828|ref|YP_003849975.1| - 0.3 10.8 3.1 0.23 11.2 0.6 1.9 1 1 1 2 2 2 0 BED zinc finger DUF4379 PF14311.1 gi|304314828|ref|YP_003849975.1| - 0.38 10.5 3.7 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-C2H2_6 PF13912.1 gi|304314828|ref|YP_003849975.1| - 0.57 10.1 2.6 6 6.9 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger FYVE PF01363.16 gi|304314828|ref|YP_003849975.1| - 1 9.3 4.4 5.2 7.0 3.0 1.9 1 1 0 1 1 1 0 FYVE zinc finger Elf1 PF05129.8 gi|304314828|ref|YP_003849975.1| - 1.1 9.0 5.8 2.8 7.6 4.0 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Mut7-C PF01927.11 gi|304314828|ref|YP_003849975.1| - 1.2 9.0 4.7 8.5 6.3 3.2 1.9 1 1 0 1 1 1 0 Mut7-C RNAse domain TFIIS_C PF01096.13 gi|304314828|ref|YP_003849975.1| - 1.3 8.7 3.8 13 5.5 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|304314828|ref|YP_003849975.1| - 5.1 6.7 7.4 0.61 9.7 0.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.16 gi|304314829|ref|YP_003849976.1| - 8e-33 113.5 0.0 1.1e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|304314829|ref|YP_003849976.1| - 1.9e-13 50.1 0.2 4.3e-13 49.0 0.1 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|304314830|ref|YP_003849977.1| - 2.1e-37 128.4 0.0 4.6e-37 127.2 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|304314830|ref|YP_003849977.1| - 1e-16 60.5 0.3 1.9e-16 59.7 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|304314831|ref|YP_003849978.1| - 9.9e-12 44.3 1.0 2.3e-11 43.1 0.7 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|304314831|ref|YP_003849978.1| - 2.2e-10 39.6 0.0 3.6e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|304314831|ref|YP_003849978.1| - 6.9e-06 25.5 0.3 1.5e-05 24.5 0.2 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|304314831|ref|YP_003849978.1| - 4.6e-05 23.4 0.6 0.00013 22.0 0.2 2.0 1 1 1 2 2 2 1 S1 RNA binding domain KH_2 PF07650.12 gi|304314831|ref|YP_003849978.1| - 0.0009 18.7 0.8 0.0021 17.5 0.6 1.7 1 0 0 1 1 1 1 KH domain GshA PF08886.6 gi|304314831|ref|YP_003849978.1| - 0.12 10.6 0.0 0.17 10.1 0.0 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase SBDS PF01172.13 gi|304314832|ref|YP_003849979.1| - 4.7e-27 93.6 0.0 7.8e-27 92.9 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|304314832|ref|YP_003849979.1| - 4.3e-21 74.8 0.0 6.4e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DegS PF05384.6 gi|304314832|ref|YP_003849979.1| - 0.039 13.1 0.5 0.079 12.1 0.3 1.5 1 0 0 1 1 1 0 Sensor protein DegS Secretin PF00263.16 gi|304314832|ref|YP_003849979.1| - 0.071 12.4 0.1 0.094 12.0 0.1 1.3 1 1 0 1 1 1 0 Bacterial type II and III secretion system protein Proteasome PF00227.21 gi|304314833|ref|YP_003849980.1| - 1e-63 214.0 0.1 1.3e-63 213.7 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|304314833|ref|YP_003849980.1| - 4e-15 54.8 0.4 1.2e-14 53.2 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF982 PF06169.7 gi|304314833|ref|YP_003849980.1| - 0.077 12.7 0.4 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF982) RNase_P_Rpp14 PF01900.14 gi|304314834|ref|YP_003849981.1| - 1.8e-21 76.0 0.0 2.2e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|304314835|ref|YP_003849982.1| - 1.3e-38 131.6 0.0 1.8e-38 131.1 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 DUF2597 PF10772.4 gi|304314835|ref|YP_003849982.1| - 0.054 13.4 0.5 6.3 6.7 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2597) RNA_binding PF01877.12 gi|304314836|ref|YP_003849983.1| - 1.4e-31 108.9 0.0 1.7e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L5_C PF00673.16 gi|304314836|ref|YP_003849983.1| - 0.072 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 ribosomal L5P family C-terminus Ribosomal_L15e PF00827.12 gi|304314837|ref|YP_003849984.1| - 2.2e-84 281.7 11.4 2.4e-84 281.6 7.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 NosD PF05048.8 gi|304314838|ref|YP_003849985.1| - 4.1e-61 206.1 65.4 3.1e-44 150.8 18.6 3.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|304314838|ref|YP_003849985.1| - 3e-28 98.5 61.9 8.2e-18 64.6 18.9 4.5 3 2 2 5 5 5 3 Right handed beta helix region Big_5 PF13205.1 gi|304314838|ref|YP_003849985.1| - 6.3e-27 94.2 12.7 2.2e-14 53.9 1.4 3.6 2 1 1 3 3 3 2 Bacterial Ig-like domain CMD PF02627.15 gi|304314839|ref|YP_003849986.1| - 2.2e-13 49.8 0.0 2.6e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1454 PF07305.7 gi|304314839|ref|YP_003849986.1| - 0.0059 15.7 0.0 0.0079 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1454) DUF4093 PF13331.1 gi|304314839|ref|YP_003849986.1| - 0.1 12.8 0.0 2.2 8.5 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4093) Band_7 PF01145.20 gi|304314840|ref|YP_003849987.1| - 1.2e-37 129.5 4.9 1.2e-37 129.5 3.4 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family NfeD PF01957.13 gi|304314841|ref|YP_003849988.1| - 4.1e-26 91.8 5.8 4.7e-26 91.6 4.0 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CoA_binding_3 PF13727.1 gi|304314841|ref|YP_003849988.1| - 2.1 8.1 4.9 4.3 7.1 3.4 1.5 1 1 0 1 1 1 0 CoA-binding domain RseC_MucC PF04246.7 gi|304314841|ref|YP_003849988.1| - 5.2 6.6 8.3 4.2 6.9 0.0 2.4 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HTH_3 PF01381.17 gi|304314842|ref|YP_003849989.1| - 7.4e-05 22.5 0.0 0.00022 21.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|304314842|ref|YP_003849989.1| - 0.011 15.9 0.0 0.011 15.9 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|304314842|ref|YP_003849989.1| - 0.084 12.4 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|304314842|ref|YP_003849989.1| - 0.11 12.5 0.1 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MacB_PCD PF12704.2 gi|304314843|ref|YP_003849990.1| - 1.8e-38 132.4 3.6 1.8e-38 132.4 2.5 2.3 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|304314843|ref|YP_003849990.1| - 9.5e-23 80.2 10.5 9.5e-23 80.2 7.3 2.0 2 0 0 2 2 2 1 FtsX-like permease family EDR1 PF14381.1 gi|304314843|ref|YP_003849990.1| - 0.025 14.1 0.1 0.05 13.1 0.1 1.5 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 ABC_tran PF00005.22 gi|304314844|ref|YP_003849991.1| - 4.8e-36 124.0 0.0 6.6e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304314844|ref|YP_003849991.1| - 1.2e-14 55.0 0.1 1.2e-09 38.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|304314844|ref|YP_003849991.1| - 1.8e-09 37.1 0.4 1.4e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|304314844|ref|YP_003849991.1| - 2.9e-06 27.4 0.2 2.5e-05 24.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|304314844|ref|YP_003849991.1| - 3.4e-06 26.3 0.0 0.0031 16.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|304314844|ref|YP_003849991.1| - 3.8e-05 23.2 0.7 0.021 14.2 0.4 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|304314844|ref|YP_003849991.1| - 4.7e-05 22.8 0.1 8.2e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|304314844|ref|YP_003849991.1| - 0.00015 21.2 0.0 0.073 12.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|304314844|ref|YP_003849991.1| - 0.00037 21.3 0.0 0.00048 20.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|304314844|ref|YP_003849991.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|304314844|ref|YP_003849991.1| - 0.0015 18.5 0.5 0.0053 16.7 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|304314844|ref|YP_003849991.1| - 0.0022 17.8 0.0 0.018 14.9 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|304314844|ref|YP_003849991.1| - 0.0023 17.4 0.0 0.0031 16.9 0.0 1.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|304314844|ref|YP_003849991.1| - 0.0045 16.9 0.1 0.022 14.6 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|304314844|ref|YP_003849991.1| - 0.013 15.2 0.4 2.7 7.6 0.0 2.2 1 1 0 2 2 2 0 NTPase AAA PF00004.24 gi|304314844|ref|YP_003849991.1| - 0.013 15.6 0.4 0.18 12.0 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|304314844|ref|YP_003849991.1| - 0.014 15.2 0.3 0.052 13.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|304314844|ref|YP_003849991.1| - 0.016 14.8 0.0 0.056 13.1 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|304314844|ref|YP_003849991.1| - 0.019 15.2 0.2 0.034 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|304314844|ref|YP_003849991.1| - 0.02 14.7 0.2 0.94 9.2 0.1 2.1 2 0 0 2 2 2 0 Dynamin family AAA_23 PF13476.1 gi|304314844|ref|YP_003849991.1| - 0.027 14.7 0.1 0.052 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|304314844|ref|YP_003849991.1| - 0.035 14.0 0.0 0.083 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|304314844|ref|YP_003849991.1| - 0.08 12.6 0.1 0.7 9.6 0.0 2.3 2 1 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|304314844|ref|YP_003849991.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|304314844|ref|YP_003849991.1| - 0.14 11.7 0.1 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain HTH_20 PF12840.2 gi|304314844|ref|YP_003849991.1| - 0.21 11.4 1.3 0.45 10.3 0.0 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain Flavoprotein PF02441.14 gi|304314845|ref|YP_003849992.1| - 1.1e-16 60.6 0.0 1.5e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DUF104 PF01954.11 gi|304314845|ref|YP_003849992.1| - 0.007 16.3 1.6 0.074 13.0 0.4 2.4 2 1 1 3 3 3 1 Protein of unknown function DUF104 Adenosine_kin PF04008.9 gi|304314847|ref|YP_003849994.1| - 3.7e-76 253.8 0.2 4.2e-76 253.7 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Tricorn_C1 PF14684.1 gi|304314847|ref|YP_003849994.1| - 0.074 12.9 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Tricorn protease C1 domain Cupin_2 PF07883.6 gi|304314848|ref|YP_003849995.1| - 2.9e-16 58.7 0.0 8.6e-16 57.2 0.0 1.8 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.2 gi|304314848|ref|YP_003849995.1| - 9e-09 35.2 0.0 1.7e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|304314848|ref|YP_003849995.1| - 2.8e-08 33.4 0.0 4.3e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|304314848|ref|YP_003849995.1| - 1.8e-07 31.2 0.0 2.8e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|304314848|ref|YP_003849995.1| - 0.0013 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|304314848|ref|YP_003849995.1| - 0.0033 16.7 0.0 0.007 15.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|304314848|ref|YP_003849995.1| - 0.0099 15.8 0.0 0.028 14.3 0.0 1.7 1 1 1 2 2 2 1 Mif2/CENP-C like Asp_Arg_Hydrox PF05118.10 gi|304314848|ref|YP_003849995.1| - 0.086 12.6 0.0 0.2 11.5 0.0 1.5 2 0 0 2 2 2 0 Aspartyl/Asparaginyl beta-hydroxylase AMP-binding PF00501.23 gi|304314849|ref|YP_003849996.1| - 1.4e-88 297.0 0.0 1.8e-88 296.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|304314849|ref|YP_003849996.1| - 7.7e-19 68.4 0.5 1.7e-18 67.3 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|304314850|ref|YP_003849997.1| - 1.8e-11 44.2 9.8 1.8e-11 44.2 6.8 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314850|ref|YP_003849997.1| - 4e-09 36.1 7.0 6.1e-09 35.6 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304314850|ref|YP_003849997.1| - 7.3e-07 28.8 24.7 8.4e-06 25.5 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314850|ref|YP_003849997.1| - 1.5e-06 27.7 16.1 0.00081 19.1 1.7 2.6 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304314850|ref|YP_003849997.1| - 2.3e-06 27.7 11.6 4.5e-06 26.8 8.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304314850|ref|YP_003849997.1| - 1.2e-05 24.6 19.3 0.0012 18.3 2.8 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|304314850|ref|YP_003849997.1| - 2.5e-05 23.9 15.5 0.0012 18.6 1.0 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314850|ref|YP_003849997.1| - 9.5e-05 22.3 23.8 0.00076 19.4 8.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314850|ref|YP_003849997.1| - 9.8e-05 23.0 12.7 0.0017 19.0 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304314850|ref|YP_003849997.1| - 0.0004 20.4 16.3 0.011 15.9 2.1 2.6 2 1 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304314850|ref|YP_003849997.1| - 0.001 19.6 11.6 0.035 14.6 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304314850|ref|YP_003849997.1| - 0.0018 18.5 14.2 0.031 14.6 9.8 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314850|ref|YP_003849997.1| - 0.0083 16.6 15.3 0.13 12.8 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|304314850|ref|YP_003849997.1| - 0.012 15.9 14.7 0.095 13.1 2.2 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|304314850|ref|YP_003849997.1| - 0.052 13.9 15.0 0.49 10.8 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304314850|ref|YP_003849997.1| - 0.13 12.1 6.4 0.35 10.7 0.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.14 gi|304314851|ref|YP_003849998.1| - 6.1e-61 205.8 0.1 7.6e-61 205.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|304314851|ref|YP_003849998.1| - 3.6e-05 23.6 0.0 7.2e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|304314851|ref|YP_003849998.1| - 0.00053 19.5 0.3 0.00091 18.7 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.13 gi|304314853|ref|YP_003850000.1| - 3.8e-44 150.6 0.1 5.6e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|304314853|ref|YP_003850000.1| - 2e-15 56.7 0.0 3.9e-15 55.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Asparaginase PF00710.15 gi|304314854|ref|YP_003850001.1| - 5.3e-94 314.6 0.0 6.2e-94 314.3 0.0 1.0 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|304314855|ref|YP_003850002.1| - 2.5e-76 256.3 0.0 3.9e-76 255.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|304314855|ref|YP_003850002.1| - 1.7e-24 86.2 0.1 4.6e-24 84.8 0.1 1.8 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|304314855|ref|YP_003850002.1| - 7.4e-17 61.2 0.7 3e-16 59.3 0.0 2.4 4 0 0 4 4 4 1 GAD domain YqeY PF09424.5 gi|304314855|ref|YP_003850002.1| - 3.2e-06 27.0 0.2 8e-06 25.7 0.1 1.7 1 0 0 1 1 1 1 Yqey-like protein PolyA_pol_RNAbd PF12627.2 gi|304314855|ref|YP_003850002.1| - 0.033 13.7 0.3 0.097 12.2 0.2 1.9 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A DUF1428 PF07237.6 gi|304314855|ref|YP_003850002.1| - 0.087 12.7 0.1 1.7 8.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1428) Pyr_redox_2 PF07992.9 gi|304314856|ref|YP_003850003.1| - 5.1e-29 101.6 0.0 7.3e-29 101.0 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|304314856|ref|YP_003850003.1| - 1.4e-17 63.8 8.7 3.8e-17 62.4 0.1 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|304314856|ref|YP_003850003.1| - 1.9e-15 57.4 2.6 7.2e-11 42.5 0.0 3.0 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|304314856|ref|YP_003850003.1| - 2.9e-08 32.6 5.1 2.2e-05 23.1 0.4 2.8 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|304314856|ref|YP_003850003.1| - 2e-07 30.2 5.1 0.0068 15.3 0.6 3.8 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|304314856|ref|YP_003850003.1| - 8.4e-07 28.4 0.6 0.00012 21.3 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|304314856|ref|YP_003850003.1| - 7.9e-06 25.1 2.6 0.003 16.6 0.3 2.5 2 1 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.1 gi|304314856|ref|YP_003850003.1| - 1.1e-05 24.5 0.3 0.025 13.4 0.0 3.1 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|304314856|ref|YP_003850003.1| - 1.2e-05 25.1 0.1 0.00059 19.7 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|304314856|ref|YP_003850003.1| - 1.3e-05 24.2 8.1 5.2e-05 22.2 1.0 3.2 3 1 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|304314856|ref|YP_003850003.1| - 3.8e-05 22.7 7.1 0.047 12.5 0.0 2.9 2 1 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|304314856|ref|YP_003850003.1| - 0.00047 19.3 3.2 0.0007 18.7 1.0 2.2 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|304314856|ref|YP_003850003.1| - 0.0037 17.5 1.5 0.0098 16.1 0.0 2.2 3 0 0 3 3 3 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|304314856|ref|YP_003850003.1| - 0.058 13.4 3.8 0.35 10.9 0.0 3.3 3 1 1 4 4 4 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|304314856|ref|YP_003850003.1| - 0.075 11.9 1.6 0.63 8.8 0.5 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein Mrr_cat PF04471.7 gi|304314857|ref|YP_003850004.1| - 5.3e-36 122.9 0.0 7.8e-36 122.3 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.1 gi|304314857|ref|YP_003850004.1| - 5.4e-25 87.2 0.0 2.5e-24 85.1 0.0 2.0 2 0 0 2 2 2 1 Mrr N-terminal domain Acetyltransf_6 PF13480.1 gi|304314857|ref|YP_003850004.1| - 0.062 13.2 0.2 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_45 PF14947.1 gi|304314857|ref|YP_003850004.1| - 0.12 12.1 0.2 0.45 10.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix Sensor PF13796.1 gi|304314858|ref|YP_003850005.1| - 0.2 11.2 9.9 0.21 11.1 6.9 1.0 1 0 0 1 1 1 0 Putative sensor Sre PF03125.13 gi|304314858|ref|YP_003850005.1| - 0.22 10.4 5.0 0.24 10.2 3.4 1.0 1 0 0 1 1 1 0 C. elegans Sre G protein-coupled chemoreceptor CcmH PF03918.9 gi|304314858|ref|YP_003850005.1| - 0.29 10.1 5.2 0.37 9.7 3.6 1.3 1 1 0 1 1 1 0 Cytochrome C biogenesis protein YlaH PF14036.1 gi|304314858|ref|YP_003850005.1| - 0.36 10.9 12.6 0.43 10.6 8.7 1.1 1 0 0 1 1 1 0 YlaH-like protein DUF3784 PF12650.2 gi|304314858|ref|YP_003850005.1| - 1.1 9.1 7.9 1.2 9.1 5.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) EI24 PF07264.6 gi|304314858|ref|YP_003850005.1| - 1.6 8.0 8.2 1.8 7.9 5.7 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF788 PF05620.6 gi|304314858|ref|YP_003850005.1| - 2.5 7.9 7.5 2.7 7.8 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF788) DUF350 PF03994.9 gi|304314858|ref|YP_003850005.1| - 6.1 6.6 16.5 0.98 9.2 4.5 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF350) GATase PF00117.23 gi|304314859|ref|YP_003850006.1| - 1.1e-40 139.2 0.2 1.2e-40 139.0 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|304314859|ref|YP_003850006.1| - 5e-16 58.8 0.3 1.6e-15 57.1 0.0 1.9 1 1 1 2 2 2 1 Peptidase C26 GMP_synt_C PF00958.17 gi|304314860|ref|YP_003850007.1| - 5e-30 103.0 0.1 1.5e-29 101.5 0.0 1.8 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|304314860|ref|YP_003850007.1| - 8e-11 41.2 0.1 4.2e-06 25.8 0.0 2.3 2 0 0 2 2 2 2 NAD synthase QueC PF06508.8 gi|304314860|ref|YP_003850007.1| - 5.1e-05 22.6 0.0 0.0089 15.3 0.0 2.3 1 1 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|304314860|ref|YP_003850007.1| - 0.00031 20.3 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|304314860|ref|YP_003850007.1| - 0.00048 18.7 0.1 0.005 15.4 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|304314860|ref|YP_003850007.1| - 0.00076 19.0 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|304314860|ref|YP_003850007.1| - 0.0024 17.3 0.0 0.0078 15.6 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|304314860|ref|YP_003850007.1| - 0.008 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|304314860|ref|YP_003850007.1| - 0.022 13.7 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Arginosuccinate synthase SelR PF01641.13 gi|304314862|ref|YP_003850009.1| - 8.6e-52 174.0 0.0 9.8e-52 173.8 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|304314862|ref|YP_003850009.1| - 0.045 13.7 1.9 0.14 12.2 1.3 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Polysacc_synt_C PF14667.1 gi|304314863|ref|YP_003850010.1| - 0.025 14.3 1.1 0.029 14.1 0.8 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Bac_export_3 PF01313.14 gi|304314863|ref|YP_003850010.1| - 0.78 9.4 2.9 0.45 10.2 0.2 1.8 2 0 0 2 2 2 0 Bacterial export proteins, family 3 YbgT_YccB PF08173.6 gi|304314863|ref|YP_003850010.1| - 0.8 9.5 4.6 1.5 8.7 0.7 2.5 2 0 0 2 2 2 0 Membrane bound YbgT-like protein DUF3929 PF13066.1 gi|304314867|ref|YP_003850014.1| - 0.081 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3929) DUF2298 PF10060.4 gi|304314868|ref|YP_003850015.1| - 0.076 11.8 5.8 0.083 11.7 4.0 1.0 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) DUF3272 PF11676.3 gi|304314868|ref|YP_003850015.1| - 0.099 12.6 1.9 0.15 12.0 1.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3272) DUF2723 PF11028.3 gi|304314870|ref|YP_003850017.1| - 0.024 14.1 1.0 0.034 13.6 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) TPR_1 PF00515.23 gi|304314872|ref|YP_003850019.1| - 9e-126 404.9 58.9 2.4e-14 52.2 0.1 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304314872|ref|YP_003850019.1| - 7.7e-107 340.8 48.9 1.9e-11 42.9 0.1 11.6 11 1 1 12 12 12 11 Tetratricopeptide repeat TPR_11 PF13414.1 gi|304314872|ref|YP_003850019.1| - 4.4e-102 333.7 34.1 5.9e-23 80.3 0.3 6.3 4 1 1 6 6 6 6 TPR repeat TPR_8 PF13181.1 gi|304314872|ref|YP_003850019.1| - 1.3e-84 271.7 50.5 1e-09 37.4 0.5 11.8 9 2 3 12 12 12 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304314872|ref|YP_003850019.1| - 1.5e-79 261.2 4.4 3.3e-12 46.7 0.0 8.5 2 2 8 10 10 10 10 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304314872|ref|YP_003850019.1| - 1.1e-78 252.9 41.8 6e-09 35.4 0.1 11.7 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|304314872|ref|YP_003850019.1| - 1.5e-74 245.8 20.1 1.5e-17 63.2 0.0 7.3 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304314872|ref|YP_003850019.1| - 1.9e-62 201.9 1.5 7.5e-06 26.1 0.1 11.1 2 1 9 11 11 11 11 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304314872|ref|YP_003850019.1| - 1.1e-49 166.6 23.7 1.8e-10 40.9 0.2 7.1 4 1 4 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304314872|ref|YP_003850019.1| - 7.8e-49 159.6 16.9 3.9e-07 29.3 0.0 11.2 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_9 PF13371.1 gi|304314872|ref|YP_003850019.1| - 1.2e-48 162.8 5.3 5e-09 35.8 0.1 6.9 3 1 5 8 8 8 7 Tetratricopeptide repeat TPR_10 PF13374.1 gi|304314872|ref|YP_003850019.1| - 6.4e-38 127.6 6.3 2.2e-05 24.1 0.1 10.6 11 0 0 11 11 11 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|304314872|ref|YP_003850019.1| - 2.2e-37 127.0 67.0 2.2e-08 34.0 3.2 5.5 1 1 6 7 7 7 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|304314872|ref|YP_003850019.1| - 2.1e-35 118.7 14.3 0.039 14.4 0.0 11.7 11 1 1 12 12 12 9 Tetratricopeptide repeat MIT PF04212.13 gi|304314872|ref|YP_003850019.1| - 1.3e-23 82.5 30.3 0.0041 16.9 0.0 11.0 9 2 2 11 11 11 5 MIT (microtubule interacting and transport) domain NARP1 PF12569.3 gi|304314872|ref|YP_003850019.1| - 1.8e-22 79.8 12.2 3.3e-05 22.8 0.0 6.5 1 1 8 9 9 9 8 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|304314872|ref|YP_003850019.1| - 4.5e-20 71.2 41.9 0.19 11.6 0.5 11.1 7 3 4 11 11 11 9 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.2 gi|304314872|ref|YP_003850019.1| - 7.7e-17 61.4 7.8 0.0085 15.9 0.0 7.9 1 1 8 9 9 9 6 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|304314872|ref|YP_003850019.1| - 1.1e-16 60.7 11.1 0.0001 21.4 0.2 6.0 1 1 4 5 5 5 5 Tetratricopeptide repeat FAT PF02259.18 gi|304314872|ref|YP_003850019.1| - 5.7e-13 48.5 22.3 0.0012 17.8 0.5 7.8 1 1 5 6 6 6 3 FAT domain BTAD PF03704.12 gi|304314872|ref|YP_003850019.1| - 7.4e-13 49.0 1.0 0.22 11.7 0.1 5.3 4 1 2 6 6 6 3 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|304314872|ref|YP_003850019.1| - 3.7e-11 43.0 0.0 0.062 13.3 0.0 5.3 1 1 5 6 6 6 4 Tetratrico peptide repeat TPR_4 PF07721.9 gi|304314872|ref|YP_003850019.1| - 2.2e-10 39.9 0.0 1.4 9.5 0.0 6.7 8 0 0 8 8 6 3 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|304314872|ref|YP_003850019.1| - 9.2e-09 34.9 6.9 0.015 14.5 0.6 4.8 1 1 4 5 5 5 3 Coatomer epsilon subunit PPTA PF01239.17 gi|304314872|ref|YP_003850019.1| - 1.9e-08 33.2 7.3 0.18 11.1 0.0 7.9 9 0 0 9 9 8 2 Protein prenyltransferase alpha subunit repeat SHNi-TPR PF10516.4 gi|304314872|ref|YP_003850019.1| - 3.1e-08 32.7 14.1 0.1 11.8 0.0 8.1 9 0 0 9 9 7 1 SHNi-TPR TPR_20 PF14561.1 gi|304314872|ref|YP_003850019.1| - 4.6e-08 33.0 5.0 0.3 11.2 0.0 6.0 2 1 3 6 6 6 1 Tetratricopeptide repeat EST1_DNA_bind PF10373.4 gi|304314872|ref|YP_003850019.1| - 9.3e-07 28.3 0.3 0.69 9.0 0.0 6.1 4 2 3 8 8 7 1 Est1 DNA/RNA binding domain RPN7 PF10602.4 gi|304314872|ref|YP_003850019.1| - 2.1e-06 27.2 16.3 0.42 9.9 0.1 7.7 2 2 4 7 7 7 1 26S proteasome subunit RPN7 PPR PF01535.15 gi|304314872|ref|YP_003850019.1| - 3e-06 26.8 22.9 11 6.1 0.0 10.1 11 0 0 11 11 10 0 PPR repeat Rapsyn_N PF10579.4 gi|304314872|ref|YP_003850019.1| - 4.6e-06 26.3 6.6 1.4 8.7 0.0 6.3 3 2 5 8 8 8 1 Rapsyn N-terminal myristoylation and linker region ChAPs PF09295.5 gi|304314872|ref|YP_003850019.1| - 1.2e-05 24.2 5.3 2 7.0 0.0 4.4 1 1 4 5 5 5 1 ChAPs (Chs5p-Arf1p-binding proteins) Phage_tail_X PF05489.7 gi|304314872|ref|YP_003850019.1| - 3.1e-05 23.3 0.0 18 4.8 0.0 5.9 6 1 1 7 7 6 0 Phage Tail Protein X Ribosomal_S16 PF00886.14 gi|304314872|ref|YP_003850019.1| - 7.5e-05 22.3 10.1 4.1 7.2 0.1 6.5 5 2 1 6 6 5 0 Ribosomal protein S16 TPR_3 PF07720.7 gi|304314872|ref|YP_003850019.1| - 0.00015 21.4 18.3 5.7 6.8 0.0 8.4 8 0 0 8 8 8 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|304314872|ref|YP_003850019.1| - 0.0015 18.5 7.9 0.38 10.6 0.0 5.4 5 3 3 8 8 7 1 Tetratricopeptide repeat Sel1 PF08238.7 gi|304314872|ref|YP_003850019.1| - 0.011 16.3 32.3 5 7.9 0.1 10.3 9 2 1 11 11 10 0 Sel1 repeat DUF627 PF04781.7 gi|304314872|ref|YP_003850019.1| - 0.026 14.1 9.4 4.5 6.9 0.1 5.1 3 1 2 6 6 5 0 Protein of unknown function (DUF627) PvlArgDC PF01862.11 gi|304314872|ref|YP_003850019.1| - 0.029 13.9 0.0 1.2e+02 2.1 0.0 5.2 6 0 0 6 6 6 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) PTH2 PF01981.11 gi|304314872|ref|YP_003850019.1| - 0.035 13.7 11.4 4.4 7.0 0.0 6.0 4 4 4 8 8 8 0 Peptidyl-tRNA hydrolase PTH2 FRD2 PF03197.8 gi|304314872|ref|YP_003850019.1| - 0.076 13.5 0.3 38 4.8 0.0 3.5 2 1 3 5 5 5 0 Bacteriophage FRD2 protein SPOB_a PF14689.1 gi|304314872|ref|YP_003850019.1| - 0.088 12.3 9.8 14 5.3 0.0 6.6 7 0 0 7 7 7 0 Sensor_kinase_SpoOB-type, alpha-helical domain Lipocalin PF00061.18 gi|304314872|ref|YP_003850019.1| - 0.16 11.9 7.2 0.41 10.6 0.3 4.6 5 1 1 6 6 6 0 Lipocalin / cytosolic fatty-acid binding protein family TPR_11 PF13414.1 gi|304314873|ref|YP_003850020.1| - 0.021 14.4 0.0 0.062 12.9 0.0 1.7 2 0 0 2 2 2 0 TPR repeat TPR_12 PF13424.1 gi|304314873|ref|YP_003850020.1| - 0.063 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Prenyltrans_2 PF13249.1 gi|304314873|ref|YP_003850020.1| - 0.07 13.5 0.0 1.4 9.3 0.0 2.6 2 1 1 3 3 3 0 Prenyltransferase-like EpsG PF14897.1 gi|304314874|ref|YP_003850021.1| - 0.017 14.0 3.9 0.02 13.8 2.7 1.0 1 0 0 1 1 1 0 EpsG family EIID-AGA PF03613.9 gi|304314874|ref|YP_003850021.1| - 0.2 10.5 4.3 0.059 12.3 1.0 1.5 1 1 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component G3P_acyltransf PF02660.10 gi|304314874|ref|YP_003850021.1| - 0.56 9.7 3.4 0.64 9.5 2.4 1.0 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase PAP2_C PF14360.1 gi|304314874|ref|YP_003850021.1| - 1 9.6 6.8 2.7 8.3 0.4 2.1 1 1 1 2 2 2 0 PAP2 superfamily C-terminal MIG-14_Wnt-bd PF06664.7 gi|304314874|ref|YP_003850021.1| - 1.3 7.7 6.3 0.12 11.2 0.9 1.7 1 1 1 2 2 2 0 Wnt-binding factor required for Wnt secretion O-antigen_lig PF13425.1 gi|304314874|ref|YP_003850021.1| - 2.2 8.2 5.3 6.1 6.8 3.7 1.7 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF2723 PF11028.3 gi|304314874|ref|YP_003850021.1| - 2.9 7.3 5.1 4.8 6.6 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2723) DUF4131 PF13567.1 gi|304314874|ref|YP_003850021.1| - 3.9 6.8 7.5 3.1 7.1 3.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PMBR PF09373.5 gi|304314875|ref|YP_003850022.1| - 2.1e-26 90.5 1.3 2e-08 33.7 0.0 4.5 4 0 0 4 4 4 3 Pseudomurein-binding repeat PKD PF00801.15 gi|304314875|ref|YP_003850022.1| - 1.4e-10 40.8 2.7 5e-10 38.9 1.2 2.5 1 1 1 2 2 2 1 PKD domain DUF650 PF04894.7 gi|304314876|ref|YP_003850023.1| - 5.4e-87 291.7 0.0 6.7e-87 291.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|304314876|ref|YP_003850023.1| - 2.2e-36 123.8 0.0 3.6e-36 123.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DegT_DnrJ_EryC1 PF01041.12 gi|304314877|ref|YP_003850024.1| - 2.1e-06 27.0 0.0 7.7e-06 25.1 0.0 1.8 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|304314877|ref|YP_003850024.1| - 0.036 12.3 0.0 0.054 11.7 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme ADH_zinc_N PF00107.21 gi|304314877|ref|YP_003850024.1| - 0.05 13.1 0.0 17 4.9 0.0 3.0 3 1 0 3 3 3 0 Zinc-binding dehydrogenase Aminotran_5 PF00266.14 gi|304314877|ref|YP_003850024.1| - 0.08 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DUF3420 PF11900.3 gi|304314877|ref|YP_003850024.1| - 0.13 12.4 0.5 0.27 11.3 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) CGI-121 PF08617.5 gi|304314878|ref|YP_003850025.1| - 3e-17 62.7 0.0 3.7e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 HMGL-like PF00682.14 gi|304314879|ref|YP_003850026.1| - 3.4e-70 236.3 0.1 5.3e-70 235.7 0.1 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|304314879|ref|YP_003850026.1| - 1.2e-33 115.6 0.6 2.3e-33 114.8 0.4 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain UPF0020 PF01170.13 gi|304314880|ref|YP_003850027.1| - 3.2e-51 173.4 0.0 4.3e-51 173.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|304314880|ref|YP_003850027.1| - 3.3e-19 69.1 0.0 5.3e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|304314880|ref|YP_003850027.1| - 5.3e-19 68.3 0.0 8.4e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304314880|ref|YP_003850027.1| - 9.4e-13 48.0 0.0 1.5e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304314880|ref|YP_003850027.1| - 1.2e-10 41.0 0.0 1.9e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.13 gi|304314880|ref|YP_003850027.1| - 3.9e-10 39.6 0.0 0.00011 21.8 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.10 gi|304314880|ref|YP_003850027.1| - 3.4e-06 26.5 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|304314880|ref|YP_003850027.1| - 6.2e-06 25.8 0.0 9.5e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|304314880|ref|YP_003850027.1| - 6.6e-06 26.6 0.0 1.3e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|304314880|ref|YP_003850027.1| - 1.5e-05 24.2 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|304314880|ref|YP_003850027.1| - 0.0002 20.5 0.0 0.00031 19.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|304314880|ref|YP_003850027.1| - 0.00089 19.5 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304314880|ref|YP_003850027.1| - 0.0041 17.5 0.0 0.0085 16.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|304314880|ref|YP_003850027.1| - 0.0051 15.9 0.0 0.022 13.8 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|304314880|ref|YP_003850027.1| - 0.012 16.0 0.0 0.031 14.7 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.6 gi|304314880|ref|YP_003850027.1| - 0.02 15.2 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF43 PF01861.11 gi|304314880|ref|YP_003850027.1| - 0.021 13.8 0.0 0.035 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 MethyltransfD12 PF02086.10 gi|304314880|ref|YP_003850027.1| - 0.029 13.8 0.0 1.2 8.5 0.0 2.1 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase AviRa PF11599.3 gi|304314880|ref|YP_003850027.1| - 0.098 11.6 0.0 9.6 5.1 0.0 2.1 1 1 1 2 2 2 0 RRNA methyltransferase AviRa tRNA_U5-meth_tr PF05958.6 gi|304314880|ref|YP_003850027.1| - 0.18 10.4 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Lycopene_cycl PF05834.7 gi|304314881|ref|YP_003850028.1| - 4.8e-13 48.7 0.3 4.2e-12 45.6 0.2 2.3 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|304314881|ref|YP_003850028.1| - 7.6e-10 38.3 1.9 0.0023 17.0 0.1 3.1 2 1 1 3 3 3 3 FAD binding domain DAO PF01266.19 gi|304314881|ref|YP_003850028.1| - 1e-07 31.2 1.9 0.00084 18.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|304314881|ref|YP_003850028.1| - 1.4e-06 27.2 0.3 0.24 9.9 0.0 3.2 3 0 0 3 3 3 2 Tryptophan halogenase HI0933_like PF03486.9 gi|304314881|ref|YP_003850028.1| - 6.9e-05 21.4 0.1 0.00025 19.6 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|304314881|ref|YP_003850028.1| - 0.00021 20.4 1.1 0.0003 19.9 0.1 1.9 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|304314881|ref|YP_003850028.1| - 0.0014 17.7 0.2 0.0026 16.9 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|304314881|ref|YP_003850028.1| - 0.0039 17.1 0.1 0.013 15.5 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.1 gi|304314881|ref|YP_003850028.1| - 0.011 16.1 0.1 0.04 14.2 0.0 2.1 1 1 1 2 2 2 0 XdhC Rossmann domain Pyr_redox_3 PF13738.1 gi|304314881|ref|YP_003850028.1| - 0.022 14.8 0.4 0.067 13.2 0.3 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|304314881|ref|YP_003850028.1| - 0.033 14.0 0.2 0.062 13.1 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|304314881|ref|YP_003850028.1| - 0.035 13.7 0.4 0.08 12.5 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.13 gi|304314881|ref|YP_003850028.1| - 0.12 10.6 0.0 0.2 9.9 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor Clr5 PF14420.1 gi|304314881|ref|YP_003850028.1| - 0.16 11.8 0.1 7 6.6 0.1 2.5 2 0 0 2 2 2 0 Clr5 domain GIDA PF01134.17 gi|304314881|ref|YP_003850028.1| - 0.16 10.7 0.2 0.38 9.5 0.1 1.6 1 0 0 1 1 1 0 Glucose inhibited division protein A bPH_2 PF03703.9 gi|304314882|ref|YP_003850029.1| - 8.5e-15 54.5 2.1 1.3e-14 53.9 0.7 1.9 2 1 0 2 2 2 1 Bacterial PH domain Cation_ATPase_C PF00689.16 gi|304314882|ref|YP_003850029.1| - 0.0063 16.0 0.2 0.0095 15.4 0.1 1.3 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus ApbE PF02424.10 gi|304314883|ref|YP_003850030.1| - 1.2e-22 80.4 0.6 1.5e-22 80.1 0.4 1.1 1 0 0 1 1 1 1 ApbE family AAA PF00004.24 gi|304314884|ref|YP_003850031.1| - 1.1e-45 155.0 0.5 4.7e-45 153.0 0.0 2.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|304314884|ref|YP_003850031.1| - 5.3e-08 32.6 0.8 6.1e-07 29.2 0.0 2.8 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|304314884|ref|YP_003850031.1| - 5.3e-08 32.9 0.1 1.8e-07 31.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|304314884|ref|YP_003850031.1| - 2.9e-06 26.5 0.2 7.3e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|304314884|ref|YP_003850031.1| - 3.1e-06 27.3 0.1 6.3e-05 23.0 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|304314884|ref|YP_003850031.1| - 3.2e-06 27.2 0.1 0.00026 21.1 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304314884|ref|YP_003850031.1| - 4.3e-05 24.3 0.6 0.00012 22.8 0.0 2.1 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|304314884|ref|YP_003850031.1| - 6.2e-05 22.0 0.0 0.00011 21.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|304314884|ref|YP_003850031.1| - 0.0001 22.3 0.3 0.00026 20.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|304314884|ref|YP_003850031.1| - 0.00025 20.9 0.0 0.00071 19.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|304314884|ref|YP_003850031.1| - 0.00029 20.5 1.0 0.0011 18.6 0.7 2.0 1 1 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|304314884|ref|YP_003850031.1| - 0.00035 20.0 0.0 0.00089 18.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|304314884|ref|YP_003850031.1| - 0.00042 19.7 4.2 0.11 11.8 0.1 3.3 2 1 1 3 3 3 1 AAA domain TIP49 PF06068.8 gi|304314884|ref|YP_003850031.1| - 0.00057 18.7 0.0 0.0011 17.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|304314884|ref|YP_003850031.1| - 0.00085 18.4 0.0 0.002 17.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_3 PF07726.6 gi|304314884|ref|YP_003850031.1| - 0.0034 16.9 0.0 0.076 12.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|304314884|ref|YP_003850031.1| - 0.0044 17.3 0.3 0.017 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|304314884|ref|YP_003850031.1| - 0.0044 16.8 0.0 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|304314884|ref|YP_003850031.1| - 0.0047 16.6 3.0 0.019 14.6 0.0 2.5 2 0 0 2 2 2 1 Archaeal ATPase AAA_24 PF13479.1 gi|304314884|ref|YP_003850031.1| - 0.0053 16.3 0.8 0.015 14.8 0.1 2.1 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|304314884|ref|YP_003850031.1| - 0.0059 15.7 0.1 0.016 14.3 0.1 1.7 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|304314884|ref|YP_003850031.1| - 0.006 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Sigma54_activat PF00158.21 gi|304314884|ref|YP_003850031.1| - 0.0063 16.0 0.1 0.071 12.5 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|304314884|ref|YP_003850031.1| - 0.016 14.4 0.3 0.059 12.6 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_11 PF13086.1 gi|304314884|ref|YP_003850031.1| - 0.019 14.5 1.3 0.5 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|304314884|ref|YP_003850031.1| - 0.03 13.2 0.0 0.07 11.9 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|304314884|ref|YP_003850031.1| - 0.04 12.7 0.0 0.073 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|304314884|ref|YP_003850031.1| - 0.05 13.6 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|304314884|ref|YP_003850031.1| - 0.054 13.1 0.1 0.3 10.7 0.0 2.1 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|304314884|ref|YP_003850031.1| - 0.066 13.5 1.3 0.39 10.9 0.0 2.5 2 1 0 2 2 2 0 ABC transporter KaiC PF06745.8 gi|304314884|ref|YP_003850031.1| - 0.069 12.2 5.4 0.14 11.3 0.0 2.9 2 1 1 3 3 3 0 KaiC Torsin PF06309.6 gi|304314884|ref|YP_003850031.1| - 0.18 11.7 0.0 0.4 10.5 0.0 1.5 1 0 0 1 1 1 0 Torsin Syntaxin-6_N PF09177.6 gi|304314884|ref|YP_003850031.1| - 0.37 11.2 5.2 9.4 6.7 1.5 2.7 3 0 0 3 3 2 0 Syntaxin 6, N-terminal DUF904 PF06005.7 gi|304314884|ref|YP_003850031.1| - 0.55 10.5 13.3 0.12 12.6 5.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|304314884|ref|YP_003850031.1| - 2.2 8.6 9.2 10 6.5 2.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|304314884|ref|YP_003850031.1| - 9.2 5.9 8.8 1.5e+02 2.1 0.2 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 HTH_3 PF01381.17 gi|304314885|ref|YP_003850032.1| - 1.6e-12 47.0 1.9 3.2e-12 46.1 1.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|304314885|ref|YP_003850032.1| - 3.8e-08 33.2 2.2 6.5e-08 32.5 1.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|304314885|ref|YP_003850032.1| - 5.5e-07 29.6 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|304314885|ref|YP_003850032.1| - 7.6e-06 25.4 3.0 2.9e-05 23.5 0.6 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|304314885|ref|YP_003850032.1| - 0.01 16.6 0.7 0.019 15.7 0.5 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_42 PF06224.7 gi|304314885|ref|YP_003850032.1| - 0.048 12.9 0.1 0.054 12.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF356 PF04009.7 gi|304314886|ref|YP_003850033.1| - 3.4e-40 136.4 0.2 3.8e-40 136.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Rep_fac_C PF08542.6 gi|304314887|ref|YP_003850034.1| - 0.098 12.6 0.0 3.5 7.6 0.0 2.5 3 0 0 3 3 3 0 Replication factor C C-terminal domain Ribosomal_S11 PF00411.14 gi|304314887|ref|YP_003850034.1| - 0.12 12.5 1.5 2.5 8.3 0.0 3.1 3 1 0 3 3 3 0 Ribosomal protein S11 Mur_ligase_M PF08245.7 gi|304314889|ref|YP_003850036.1| - 2e-25 89.9 0.3 4.7e-25 88.7 0.2 1.7 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|304314889|ref|YP_003850036.1| - 3e-08 33.6 0.1 2.3e-07 30.7 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Glycos_transf_4 PF00953.16 gi|304314890|ref|YP_003850037.1| - 2.3e-25 89.2 11.2 2.3e-25 89.2 7.8 3.1 3 1 0 3 3 3 2 Glycosyl transferase family 4 MraY_sig1 PF10555.4 gi|304314890|ref|YP_003850037.1| - 0.0016 17.5 3.3 0.0049 16.0 2.3 1.9 1 0 0 1 1 1 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ATPgrasp_Ter PF15632.1 gi|304314891|ref|YP_003850038.1| - 1.4e-21 76.5 0.0 8.5e-20 70.7 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|304314891|ref|YP_003850038.1| - 5.3e-19 68.6 0.0 8e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|304314891|ref|YP_003850038.1| - 3.8e-15 56.1 0.0 6.7e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|304314891|ref|YP_003850038.1| - 2.2e-08 33.6 0.0 3.5e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|304314891|ref|YP_003850038.1| - 5.6e-06 25.8 0.1 6.9e-05 22.3 0.1 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|304314891|ref|YP_003850038.1| - 0.00016 21.2 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|304314891|ref|YP_003850038.1| - 0.00033 20.0 0.0 0.00062 19.1 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain HycI PF01750.13 gi|304314892|ref|YP_003850039.1| - 2e-28 98.5 0.0 2.6e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_18 PF12847.2 gi|304314893|ref|YP_003850040.1| - 2.4e-11 44.1 0.1 3.9e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|304314893|ref|YP_003850040.1| - 2.4e-10 39.8 0.0 3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|304314893|ref|YP_003850040.1| - 2.1e-09 37.1 0.0 3.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|304314893|ref|YP_003850040.1| - 2.8e-08 33.7 0.1 8.3e-08 32.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304314893|ref|YP_003850040.1| - 5.9e-07 29.8 0.0 9.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|304314893|ref|YP_003850040.1| - 8.2e-07 29.3 0.0 1.3e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304314893|ref|YP_003850040.1| - 9.3e-06 25.1 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|304314893|ref|YP_003850040.1| - 1.5e-05 24.2 0.1 2e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|304314893|ref|YP_003850040.1| - 0.00038 20.8 0.0 0.00055 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|304314893|ref|YP_003850040.1| - 0.00064 18.7 0.0 0.00084 18.3 0.0 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Cons_hypoth95 PF03602.10 gi|304314893|ref|YP_003850040.1| - 0.0019 17.6 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 NikR_C PF08753.6 gi|304314894|ref|YP_003850041.1| - 8e-30 102.5 5.9 1.2e-29 102.0 4.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|304314894|ref|YP_003850041.1| - 2.4e-05 24.0 0.4 4.8e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Fucose_iso_N1 PF07881.7 gi|304314894|ref|YP_003850041.1| - 0.047 13.2 0.5 0.068 12.7 0.3 1.3 1 0 0 1 1 1 0 L-fucose isomerase, first N-terminal domain PduL PF06130.7 gi|304314894|ref|YP_003850041.1| - 0.075 12.8 1.0 0.13 12.1 0.7 1.4 1 0 0 1 1 1 0 Propanediol utilisation protein PduL CBS PF00571.23 gi|304314895|ref|YP_003850042.1| - 1.1e-33 114.7 2.8 5.8e-17 61.1 0.0 2.1 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.3 gi|304314895|ref|YP_003850042.1| - 0.11 12.2 0.2 8.3 6.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) TrmB PF01978.14 gi|304314896|ref|YP_003850043.1| - 1.6e-06 27.6 0.6 0.023 14.3 0.1 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB DUF2629 PF10945.3 gi|304314896|ref|YP_003850043.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2629) HemN_C PF06969.11 gi|304314896|ref|YP_003850043.1| - 0.032 14.2 0.0 0.16 12.0 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain DUF2250 PF10007.4 gi|304314896|ref|YP_003850043.1| - 0.035 14.0 0.1 0.078 12.8 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.6 gi|304314896|ref|YP_003850043.1| - 0.046 13.4 0.2 7.3 6.3 0.0 2.5 2 1 0 2 2 2 0 CDC6, C terminal tRNA-synt_2d PF01409.15 gi|304314897|ref|YP_003850044.1| - 3.8e-94 314.5 0.0 5.2e-94 314.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|304314897|ref|YP_003850044.1| - 2.2e-05 23.4 1.0 0.023 13.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) DUF2582 PF10771.4 gi|304314897|ref|YP_003850044.1| - 7.3e-05 22.5 0.2 0.00069 19.4 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2582) tRNA-synt_2b PF00587.20 gi|304314897|ref|YP_003850044.1| - 0.00022 20.8 0.1 0.00061 19.4 0.1 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) TrmB PF01978.14 gi|304314897|ref|YP_003850044.1| - 0.00045 19.8 0.9 0.54 10.0 0.1 3.5 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|304314897|ref|YP_003850044.1| - 0.0018 17.9 0.0 0.22 11.2 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|304314897|ref|YP_003850044.1| - 0.035 13.7 0.0 5.1 6.7 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.17 gi|304314897|ref|YP_003850044.1| - 0.065 12.9 0.0 16 5.2 0.0 2.9 3 0 0 3 3 3 0 MarR family CitG PF01874.11 gi|304314898|ref|YP_003850045.1| - 2.4e-81 272.9 0.0 2.8e-81 272.7 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase ALAD PF00490.16 gi|304314899|ref|YP_003850046.1| - 5.7e-142 472.3 0.2 6.4e-142 472.2 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Fer4 PF00037.22 gi|304314900|ref|YP_003850047.1| - 5.8e-10 38.3 8.9 4.4e-06 26.0 1.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304314900|ref|YP_003850047.1| - 9.3e-08 31.6 10.2 0.00015 21.4 1.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314900|ref|YP_003850047.1| - 2.5e-06 27.2 10.3 2.5e-06 27.2 7.2 2.5 2 2 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304314900|ref|YP_003850047.1| - 5.8e-06 26.5 10.8 5.8e-06 26.5 7.5 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314900|ref|YP_003850047.1| - 3.2e-05 24.5 17.5 0.034 14.8 1.8 3.4 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304314900|ref|YP_003850047.1| - 4.2e-05 23.4 12.0 4.2e-05 23.4 8.3 2.6 1 1 2 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314900|ref|YP_003850047.1| - 0.00034 20.8 12.3 0.00034 20.8 8.5 3.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314900|ref|YP_003850047.1| - 0.014 15.9 15.8 0.037 14.6 2.7 3.7 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304314900|ref|YP_003850047.1| - 0.03 14.6 1.6 0.03 14.6 1.1 3.3 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304314900|ref|YP_003850047.1| - 0.043 14.2 4.0 0.043 14.2 2.7 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304314900|ref|YP_003850047.1| - 3.1 7.7 21.6 0.043 13.6 7.2 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain HhH-GPD PF00730.20 gi|304314901|ref|YP_003850048.1| - 5.8e-18 65.1 0.0 8.1e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|304314901|ref|YP_003850048.1| - 0.00039 19.9 1.1 0.00087 18.8 0.0 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|304314901|ref|YP_003850048.1| - 0.024 14.8 0.1 0.1 12.7 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain AIM24 PF01987.12 gi|304314902|ref|YP_003850049.1| - 9.9e-65 218.0 2.1 1.1e-64 217.8 1.4 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 TSP_C PF05735.7 gi|304314902|ref|YP_003850049.1| - 0.091 12.3 0.0 7.7 6.0 0.0 2.3 2 0 0 2 2 2 0 Thrombospondin C-terminal region Chorismate_synt PF01264.16 gi|304314903|ref|YP_003850050.1| - 4.5e-144 479.1 1.5 5.1e-144 479.0 1.0 1.0 1 0 0 1 1 1 1 Chorismate synthase DUF1212 PF06738.7 gi|304314904|ref|YP_003850051.1| - 6.6e-24 84.4 0.6 6.6e-24 84.4 0.4 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF1212) DUF3815 PF12821.2 gi|304314904|ref|YP_003850051.1| - 0.01 15.7 33.2 0.033 14.1 8.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3815) SID-1_RNA_chan PF13965.1 gi|304314904|ref|YP_003850051.1| - 0.58 8.2 2.5 0.84 7.7 1.7 1.2 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Lactamase_B_2 PF12706.2 gi|304314905|ref|YP_003850052.1| - 1.8e-20 73.2 0.1 2.2e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|304314905|ref|YP_003850052.1| - 1.2e-13 51.1 0.1 1.7e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|304314905|ref|YP_003850052.1| - 1e-07 31.7 1.4 2.4e-06 27.3 0.1 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily FAA_hydrolase PF01557.13 gi|304314905|ref|YP_003850052.1| - 0.11 11.8 1.3 1.6 8.1 0.9 2.1 1 1 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family DUF2121 PF09894.4 gi|304314906|ref|YP_003850053.1| - 1.1e-75 253.1 2.3 1.7e-75 252.5 1.6 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) YajC PF02699.10 gi|304314906|ref|YP_003850053.1| - 0.026 14.1 1.1 0.16 11.6 0.1 2.3 2 0 0 2 2 2 0 Preprotein translocase subunit Thioredox_DsbH PF03190.10 gi|304314907|ref|YP_003850054.1| - 5.1e-76 253.9 0.0 7.5e-76 253.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|304314907|ref|YP_003850054.1| - 2.2e-13 50.0 0.0 6.2e-13 48.5 0.0 1.9 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|304314907|ref|YP_003850054.1| - 7.5e-05 22.8 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Prenyltrans_1 PF13243.1 gi|304314907|ref|YP_003850054.1| - 0.00051 20.0 0.0 0.73 9.8 0.0 3.1 3 0 0 3 3 3 2 Prenyltransferase-like E1-E2_ATPase PF00122.15 gi|304314908|ref|YP_003850055.1| - 2.8e-51 173.7 0.8 2.8e-51 173.7 0.5 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|304314908|ref|YP_003850055.1| - 1.6e-44 152.8 0.2 2.9e-44 152.0 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|304314908|ref|YP_003850055.1| - 3.5e-16 59.9 0.0 6.6e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304314908|ref|YP_003850055.1| - 1e-05 25.2 0.1 0.00076 19.1 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|304314908|ref|YP_003850055.1| - 0.12 12.3 0.0 0.4 10.5 0.0 2.0 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Rubrerythrin PF02915.12 gi|304314909|ref|YP_003850056.1| - 2.7e-38 131.3 8.0 3.2e-38 131.1 5.6 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|304314909|ref|YP_003850056.1| - 1.4e-09 37.8 2.3 1.8e-09 37.4 1.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|304314909|ref|YP_003850056.1| - 0.00054 19.8 1.2 0.58 9.9 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) HypA PF01155.14 gi|304314909|ref|YP_003850056.1| - 0.0019 17.8 0.4 0.0045 16.6 0.2 1.7 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family Bac_luciferase PF00296.15 gi|304314909|ref|YP_003850056.1| - 0.0027 16.9 0.4 0.0035 16.5 0.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase NRDD PF13597.1 gi|304314909|ref|YP_003850056.1| - 0.024 12.7 0.5 0.038 12.0 0.4 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase UvrD_C PF13361.1 gi|304314909|ref|YP_003850056.1| - 0.07 12.5 1.2 0.12 11.8 0.1 1.7 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain Arfaptin PF06456.8 gi|304314909|ref|YP_003850056.1| - 0.11 11.8 0.3 1.6 8.0 0.1 2.0 2 0 0 2 2 2 0 Arfaptin-like domain RNA_POL_M_15KD PF02150.11 gi|304314909|ref|YP_003850056.1| - 0.16 11.6 0.1 0.16 11.6 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Desulfoferrodox PF01880.13 gi|304314910|ref|YP_003850057.1| - 1.3e-24 86.2 0.1 1.7e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.7 gi|304314910|ref|YP_003850057.1| - 1.5e-21 75.4 3.0 2.7e-21 74.6 2.1 1.5 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Glyoxalase_2 PF12681.2 gi|304314911|ref|YP_003850058.1| - 5.8e-15 55.8 0.0 6.6e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|304314911|ref|YP_003850058.1| - 7.1e-15 55.1 0.0 1.9e-14 53.7 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|304314911|ref|YP_003850058.1| - 2.1e-08 34.1 0.0 1.3e-07 31.6 0.0 2.1 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF3361 PF11841.3 gi|304314911|ref|YP_003850058.1| - 0.05 13.3 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3361) Glyoxalase_3 PF13468.1 gi|304314911|ref|YP_003850058.1| - 0.085 12.7 0.0 10 5.9 0.0 2.1 1 1 1 2 2 2 0 Glyoxalase-like domain Na_H_Exchanger PF00999.16 gi|304314913|ref|YP_003850060.1| - 6.4e-49 166.4 49.5 7.5e-49 166.2 34.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Vma12 PF11712.3 gi|304314913|ref|YP_003850060.1| - 0.13 11.9 0.5 0.34 10.6 0.3 1.7 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase MFS_1 PF07690.11 gi|304314914|ref|YP_003850061.1| - 2.9e-19 68.9 57.9 1.5e-09 37.0 19.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.3 gi|304314914|ref|YP_003850061.1| - 0.0036 15.8 28.2 0.33 9.3 1.6 3.8 2 2 0 3 3 3 3 Vacuole effluxer Atg22 like Prenyltrans_2 PF13249.1 gi|304314915|ref|YP_003850062.1| - 1.3e-17 64.2 0.0 1.9e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Prenyltransferase-like Prenyltrans PF00432.16 gi|304314915|ref|YP_003850062.1| - 2.8e-07 29.9 0.2 0.017 14.6 0.0 3.1 3 0 0 3 3 3 2 Prenyltransferase and squalene oxidase repeat Prenyltrans_1 PF13243.1 gi|304314915|ref|YP_003850062.1| - 0.0014 18.5 0.0 1.1 9.2 0.0 2.8 2 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|304314916|ref|YP_003850063.1| - 0.0045 17.3 0.0 0.005 17.2 0.0 1.1 1 0 0 1 1 1 1 Prenyltransferase-like DHH PF01368.15 gi|304314917|ref|YP_003850064.1| - 2.5e-11 43.3 0.1 5.9e-11 42.2 0.1 1.6 1 1 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|304314917|ref|YP_003850064.1| - 1.3e-09 37.7 0.3 3.1e-09 36.5 0.2 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|304314917|ref|YP_003850064.1| - 1.1e-06 28.6 11.8 1.1e-06 28.6 8.2 3.2 1 1 1 2 2 2 2 DnaJ central domain S1 PF00575.18 gi|304314917|ref|YP_003850064.1| - 8.1e-05 22.6 0.1 0.0008 19.4 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain Rep_fac-A_3 PF08661.6 gi|304314917|ref|YP_003850064.1| - 0.00078 19.3 0.2 0.0018 18.1 0.1 1.5 1 0 0 1 1 1 1 Replication factor A protein 3 PolC_DP2 PF03833.8 gi|304314917|ref|YP_003850064.1| - 0.0046 14.7 3.0 0.0072 14.0 2.1 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.1 gi|304314917|ref|YP_003850064.1| - 0.0049 16.0 2.7 0.0049 16.0 1.9 3.1 2 1 1 3 3 3 1 zinc-ribbon domain DUF4145 PF13643.1 gi|304314917|ref|YP_003850064.1| - 0.17 11.7 0.8 0.55 10.1 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4145) DZR PF12773.2 gi|304314917|ref|YP_003850064.1| - 1.1 9.1 20.1 0.14 11.9 7.6 2.6 1 1 1 2 2 2 0 Double zinc ribbon HhH-GPD PF00730.20 gi|304314918|ref|YP_003850065.1| - 1.6e-27 95.8 0.0 2.3e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|304314918|ref|YP_003850065.1| - 1.7e-10 40.0 0.0 4.9e-10 38.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|304314918|ref|YP_003850065.1| - 1.7e-05 24.9 0.0 0.15 12.2 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|304314918|ref|YP_003850065.1| - 0.0096 16.0 2.2 0.018 15.1 1.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|304314918|ref|YP_003850065.1| - 0.01 15.5 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_2 PF12826.2 gi|304314918|ref|YP_003850065.1| - 0.022 14.6 0.0 6.9 6.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Miro PF08477.8 gi|304314919|ref|YP_003850066.1| - 1.1e-22 80.7 0.1 1.3e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|304314919|ref|YP_003850066.1| - 1.1e-15 57.5 0.4 8e-14 51.4 0.2 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|304314919|ref|YP_003850066.1| - 9.7e-11 41.2 0.1 2.5e-09 36.6 0.1 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.18 gi|304314919|ref|YP_003850066.1| - 1.5e-10 41.0 0.1 1.8e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|304314919|ref|YP_003850066.1| - 1.7e-08 34.0 0.1 2e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Ras family FeoB_N PF02421.13 gi|304314919|ref|YP_003850066.1| - 1.1e-06 28.0 0.4 8.2e-05 21.9 0.3 2.8 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.5 gi|304314919|ref|YP_003850066.1| - 7.9e-06 25.2 0.1 1.4e-05 24.4 0.1 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MobB PF03205.9 gi|304314919|ref|YP_003850066.1| - 0.00015 21.4 0.2 0.00023 20.9 0.2 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|304314919|ref|YP_003850066.1| - 0.0063 16.0 0.2 0.039 13.5 0.1 2.0 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.20 gi|304314919|ref|YP_003850066.1| - 0.014 14.8 0.0 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PGP_phosphatase PF09419.5 gi|304314919|ref|YP_003850066.1| - 0.017 14.4 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase AAA_24 PF13479.1 gi|304314919|ref|YP_003850066.1| - 0.022 14.3 0.3 0.028 14.0 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|304314919|ref|YP_003850066.1| - 0.044 13.7 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|304314919|ref|YP_003850066.1| - 0.071 12.9 0.0 0.87 9.3 0.0 2.0 1 1 0 2 2 2 0 Dynamin family AAA_22 PF13401.1 gi|304314919|ref|YP_003850066.1| - 0.078 13.1 0.1 0.2 11.8 0.1 1.7 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|304314919|ref|YP_003850066.1| - 0.079 12.3 0.1 0.24 10.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|304314919|ref|YP_003850066.1| - 0.11 12.3 0.7 0.72 9.7 0.5 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|304314919|ref|YP_003850066.1| - 0.11 12.6 0.1 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase EPSP_synthase PF00275.15 gi|304314920|ref|YP_003850067.1| - 5e-128 427.0 0.0 5.6e-128 426.9 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tRNA-synt_1 PF00133.17 gi|304314921|ref|YP_003850068.1| - 7.2e-155 516.3 0.1 4.8e-154 513.6 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|304314921|ref|YP_003850068.1| - 2e-41 141.3 0.0 3.7e-41 140.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|304314921|ref|YP_003850068.1| - 9.8e-29 100.1 0.9 2.8e-16 59.1 0.0 4.0 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|304314921|ref|YP_003850068.1| - 3e-06 26.5 0.0 0.027 13.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|304314921|ref|YP_003850068.1| - 5.7e-05 22.4 0.0 0.014 14.7 0.0 2.4 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|304314921|ref|YP_003850068.1| - 0.00045 18.9 0.0 0.0055 15.4 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|304314921|ref|YP_003850068.1| - 0.0045 15.8 0.0 2.6 6.7 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (R) ENTH PF01417.15 gi|304314921|ref|YP_003850068.1| - 0.044 13.6 0.2 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 ENTH domain tRNA-synt_1b PF00579.20 gi|304314921|ref|YP_003850068.1| - 0.3 10.1 0.0 1.6 7.7 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) EMP70 PF02990.11 gi|304314922|ref|YP_003850069.1| - 2.8 6.2 8.8 3 6.1 6.1 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 B5 PF03484.10 gi|304314925|ref|YP_003850072.1| - 7e-16 57.8 0.7 6.9e-13 48.2 0.1 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|304314925|ref|YP_003850072.1| - 1.3e-12 47.5 0.0 2.3e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|304314925|ref|YP_003850072.1| - 0.0012 18.0 0.1 0.0025 17.0 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) UPF0047 PF01894.12 gi|304314926|ref|YP_003850073.1| - 4.6e-38 129.6 0.0 5.2e-38 129.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF362 PF04015.7 gi|304314927|ref|YP_003850074.1| - 2.6e-59 200.1 0.0 3.2e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|304314927|ref|YP_003850074.1| - 2.7e-12 45.7 15.2 2.2e-06 26.9 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304314927|ref|YP_003850074.1| - 2.1e-10 40.8 4.7 3.4e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304314927|ref|YP_003850074.1| - 7.3e-09 35.0 17.2 0.00014 21.5 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304314927|ref|YP_003850074.1| - 7.8e-09 35.2 14.8 1.4e-08 34.3 10.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304314927|ref|YP_003850074.1| - 4.8e-08 32.5 18.1 0.00048 19.8 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304314927|ref|YP_003850074.1| - 1.2e-06 28.4 5.5 0.0079 16.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304314927|ref|YP_003850074.1| - 4.6e-06 27.2 9.3 0.0027 18.3 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|304314927|ref|YP_003850074.1| - 2.4e-05 24.5 7.1 0.073 13.4 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304314927|ref|YP_003850074.1| - 0.00092 19.4 15.0 0.0072 16.5 10.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304314927|ref|YP_003850074.1| - 0.0035 17.5 19.1 0.074 13.4 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304314927|ref|YP_003850074.1| - 0.027 14.3 16.4 0.13 12.1 11.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304314927|ref|YP_003850074.1| - 0.037 14.6 10.3 0.73 10.4 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304314927|ref|YP_003850074.1| - 0.064 13.1 6.4 0.13 12.1 4.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304314927|ref|YP_003850074.1| - 0.3 11.7 23.0 2.8 8.7 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|304314927|ref|YP_003850074.1| - 0.37 11.2 13.1 1.5 9.2 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|304314927|ref|YP_003850074.1| - 0.41 11.1 13.4 2.9 8.3 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain MCH PF02289.11 gi|304314928|ref|YP_003850075.1| - 1.1e-161 537.0 1.0 1.3e-161 536.8 0.7 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thymidylat_synt PF00303.14 gi|304314929|ref|YP_003850076.1| - 6.9e-39 133.4 0.0 1.6e-38 132.2 0.0 1.5 1 1 0 1 1 1 1 Thymidylate synthase Vac_Fusion PF02346.11 gi|304314929|ref|YP_003850076.1| - 0.078 12.4 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Chordopoxvirus fusion protein Meth_synt_2 PF01717.13 gi|304314930|ref|YP_003850077.1| - 1.9e-104 349.1 0.0 2.2e-104 348.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|304314930|ref|YP_003850077.1| - 7.9e-12 45.0 0.0 1.6e-11 44.0 0.0 1.4 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|304314930|ref|YP_003850077.1| - 0.0013 17.7 0.0 0.0027 16.6 0.0 1.6 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF1894 PF08979.6 gi|304314931|ref|YP_003850078.1| - 4.2e-33 113.2 0.4 4.7e-33 113.1 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.6 gi|304314932|ref|YP_003850079.1| - 6.6e-52 175.2 0.0 7.4e-52 175.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) Dicty_CAR PF05462.6 gi|304314933|ref|YP_003850080.1| - 0.063 12.1 4.6 0.16 10.8 3.2 1.6 1 0 0 1 1 1 0 Slime mold cyclic AMP receptor Acetyltransf_1 PF00583.19 gi|304314934|ref|YP_003850081.1| - 6.4e-19 67.7 0.0 8.5e-19 67.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|304314934|ref|YP_003850081.1| - 4.5e-15 55.5 0.0 6.5e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|304314934|ref|YP_003850081.1| - 1.1e-10 41.6 0.0 1.3e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|304314934|ref|YP_003850081.1| - 3.9e-09 36.5 0.0 4.9e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|304314934|ref|YP_003850081.1| - 1.3e-08 34.4 0.0 1.9e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|304314934|ref|YP_003850081.1| - 5e-08 32.8 0.0 9.7e-08 31.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|304314934|ref|YP_003850081.1| - 1.8e-06 28.1 0.0 7.5e-06 26.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|304314934|ref|YP_003850081.1| - 1.6e-05 24.6 0.0 6.6e-05 22.7 0.0 2.0 3 0 0 3 3 3 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|304314934|ref|YP_003850081.1| - 0.0011 18.9 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|304314934|ref|YP_003850081.1| - 0.0047 16.5 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF354 PF04007.7 gi|304314935|ref|YP_003850082.1| - 9.2e-158 524.4 0.4 1e-157 524.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_3 PF13528.1 gi|304314935|ref|YP_003850082.1| - 8.2e-06 25.2 0.0 0.0006 19.1 0.0 2.8 1 1 1 2 2 2 1 Glycosyl transferase family 1 Epimerase_2 PF02350.14 gi|304314935|ref|YP_003850082.1| - 8.9e-05 21.4 0.0 0.00016 20.5 0.0 1.4 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase LpxB PF02684.10 gi|304314935|ref|YP_003850082.1| - 0.0012 17.5 0.0 0.002 16.8 0.0 1.3 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase cobW PF02492.14 gi|304314936|ref|YP_003850083.1| - 2.3e-43 147.7 0.3 3.1e-43 147.2 0.2 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|304314936|ref|YP_003850083.1| - 2e-14 53.0 1.5 1.9e-08 33.3 1.1 2.1 2 0 0 2 2 2 2 ArgK protein GTP_EFTU PF00009.22 gi|304314936|ref|YP_003850083.1| - 3.5e-06 26.5 0.5 0.0088 15.4 0.1 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|304314936|ref|YP_003850083.1| - 7.9e-05 22.3 0.1 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|304314936|ref|YP_003850083.1| - 0.00017 21.3 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 NTPase Arf PF00025.16 gi|304314936|ref|YP_003850083.1| - 0.00089 18.5 0.1 0.1 11.8 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family MobB PF03205.9 gi|304314936|ref|YP_003850083.1| - 0.0018 18.0 0.0 0.0065 16.1 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|304314936|ref|YP_003850083.1| - 0.0044 16.6 0.0 0.0066 16.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|304314936|ref|YP_003850083.1| - 0.0059 16.4 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|304314936|ref|YP_003850083.1| - 0.0064 15.6 0.0 0.051 12.7 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|304314936|ref|YP_003850083.1| - 0.0083 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|304314936|ref|YP_003850083.1| - 0.0084 15.5 0.0 0.024 14.0 0.0 1.8 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|304314936|ref|YP_003850083.1| - 0.013 16.3 0.1 0.029 15.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain IMPDH PF00478.20 gi|304314936|ref|YP_003850083.1| - 0.013 14.3 1.8 0.083 11.7 0.3 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Zeta_toxin PF06414.7 gi|304314936|ref|YP_003850083.1| - 0.016 14.3 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|304314936|ref|YP_003850083.1| - 0.035 14.4 0.0 0.088 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|304314936|ref|YP_003850083.1| - 0.058 13.3 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|304314936|ref|YP_003850083.1| - 0.059 13.0 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|304314936|ref|YP_003850083.1| - 0.062 11.9 0.0 0.087 11.4 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|304314936|ref|YP_003850083.1| - 0.064 13.4 0.0 0.15 12.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|304314936|ref|YP_003850083.1| - 0.074 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|304314936|ref|YP_003850083.1| - 0.078 12.9 0.1 0.11 12.4 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|304314936|ref|YP_003850083.1| - 0.089 12.2 0.1 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KAP_NTPase PF07693.9 gi|304314936|ref|YP_003850083.1| - 0.11 11.5 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Pox_A32 PF04665.7 gi|304314936|ref|YP_003850083.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein ABC_tran PF00005.22 gi|304314936|ref|YP_003850083.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter HypA PF01155.14 gi|304314937|ref|YP_003850084.1| - 4.4e-31 106.8 1.6 4.9e-31 106.7 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-HYPF PF07503.7 gi|304314937|ref|YP_003850084.1| - 0.13 11.7 0.5 0.42 10.0 0.5 1.7 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.5 gi|304314937|ref|YP_003850084.1| - 0.26 11.2 1.5 0.53 10.2 1.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Pribosyltran_N PF13793.1 gi|304314938|ref|YP_003850085.1| - 5.3e-30 103.5 0.0 1.1e-28 99.3 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|304314938|ref|YP_003850085.1| - 7.7e-15 54.7 1.1 2.8e-14 52.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|304314938|ref|YP_003850085.1| - 1.9e-09 37.5 2.8 2.2e-09 37.3 1.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|304314938|ref|YP_003850085.1| - 0.0014 17.8 0.2 0.0023 17.1 0.2 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|304314938|ref|YP_003850085.1| - 0.11 11.8 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Lon_C PF05362.8 gi|304314939|ref|YP_003850086.1| - 5.8e-32 110.6 3.0 9.3e-32 110.0 2.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|304314939|ref|YP_003850086.1| - 1.9e-31 109.3 0.0 1.6e-21 76.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|304314939|ref|YP_003850086.1| - 4.1e-18 65.4 0.0 1.3e-09 37.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|304314939|ref|YP_003850086.1| - 4.6e-15 55.3 0.0 1.3e-09 37.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|304314939|ref|YP_003850086.1| - 6.8e-15 54.6 0.4 0.00027 19.8 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|304314939|ref|YP_003850086.1| - 3.3e-12 46.2 0.0 5.7e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|304314939|ref|YP_003850086.1| - 1.3e-09 37.6 0.3 3.2e-09 36.3 0.2 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Sigma54_activ_2 PF14532.1 gi|304314939|ref|YP_003850086.1| - 5.6e-09 36.1 0.0 0.00029 20.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.24 gi|304314939|ref|YP_003850086.1| - 4.3e-07 30.2 0.0 0.0034 17.5 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|304314939|ref|YP_003850086.1| - 5e-06 26.6 0.0 0.00041 20.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|304314939|ref|YP_003850086.1| - 6.2e-06 25.8 0.0 0.021 14.3 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|304314939|ref|YP_003850086.1| - 8.6e-06 24.9 0.0 0.0087 15.1 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|304314939|ref|YP_003850086.1| - 1.5e-05 25.0 0.0 0.00012 22.1 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|304314939|ref|YP_003850086.1| - 3.4e-05 23.3 0.0 0.00067 19.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|304314939|ref|YP_003850086.1| - 9.4e-05 22.7 0.0 0.00032 21.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|304314939|ref|YP_003850086.1| - 0.00016 21.4 0.0 0.44 10.2 0.0 2.8 2 0 0 2 2 2 2 NTPase AAA_PrkA PF08298.6 gi|304314939|ref|YP_003850086.1| - 0.00025 19.8 0.1 0.12 11.0 0.0 2.4 2 0 0 2 2 2 2 PrkA AAA domain AAA_30 PF13604.1 gi|304314939|ref|YP_003850086.1| - 0.0012 18.4 0.0 0.039 13.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|304314939|ref|YP_003850086.1| - 0.0014 18.3 0.0 0.0051 16.4 0.0 2.0 2 0 0 2 2 1 1 NACHT domain AAA_19 PF13245.1 gi|304314939|ref|YP_003850086.1| - 0.0033 17.1 0.1 0.019 14.6 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain T2SE PF00437.15 gi|304314939|ref|YP_003850086.1| - 0.0044 15.9 0.0 0.02 13.7 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|304314939|ref|YP_003850086.1| - 0.0046 16.4 0.0 0.018 14.5 0.0 2.0 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_2 PF07724.9 gi|304314939|ref|YP_003850086.1| - 0.0053 16.6 0.1 2.3 8.0 0.0 3.0 4 0 0 4 4 2 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|304314939|ref|YP_003850086.1| - 0.011 14.6 0.0 0.023 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|304314939|ref|YP_003850086.1| - 0.014 16.1 0.0 0.055 14.2 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|304314939|ref|YP_003850086.1| - 0.015 14.7 0.0 0.035 13.5 0.0 1.6 2 0 0 2 2 1 0 AAA-like domain PhoH PF02562.11 gi|304314939|ref|YP_003850086.1| - 0.016 14.4 0.1 0.046 12.9 0.0 1.8 2 0 0 2 2 1 0 PhoH-like protein ABC_tran PF00005.22 gi|304314939|ref|YP_003850086.1| - 0.017 15.4 0.0 0.059 13.6 0.0 2.0 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|304314939|ref|YP_003850086.1| - 0.024 13.8 0.0 0.06 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|304314939|ref|YP_003850086.1| - 0.024 13.7 0.0 0.068 12.2 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin Parvo_NS1 PF01057.12 gi|304314939|ref|YP_003850086.1| - 0.032 13.1 0.0 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 RNA_helicase PF00910.17 gi|304314939|ref|YP_003850086.1| - 0.059 13.5 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_25 PF13481.1 gi|304314939|ref|YP_003850086.1| - 0.063 12.6 0.0 0.26 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|304314939|ref|YP_003850086.1| - 0.074 12.9 0.0 1.7 8.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain TraL PF07178.6 gi|304314939|ref|YP_003850086.1| - 0.14 12.1 2.1 0.31 11.0 1.5 1.4 1 0 0 1 1 1 0 TraL protein ATP-cone PF03477.11 gi|304314939|ref|YP_003850086.1| - 0.29 11.5 3.1 10 6.6 0.1 3.2 2 1 0 2 2 2 0 ATP cone domain PAS_9 PF13426.1 gi|304314940|ref|YP_003850087.1| - 2.4e-55 185.2 1.3 1.8e-23 82.8 0.0 3.1 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|304314940|ref|YP_003850087.1| - 1.2e-47 160.3 1.0 1.4e-16 60.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|304314940|ref|YP_003850087.1| - 1.5e-43 147.2 0.0 3.6e-17 62.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|304314940|ref|YP_003850087.1| - 4.1e-29 99.4 0.6 1.9e-08 33.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|304314940|ref|YP_003850087.1| - 4.8e-22 77.8 0.1 4.6e-10 39.4 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|304314940|ref|YP_003850087.1| - 1.5e-08 34.8 0.0 0.016 15.4 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.1 gi|304314940|ref|YP_003850087.1| - 1.2e-06 28.4 0.0 0.0029 17.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|304314940|ref|YP_003850087.1| - 2.2e-06 27.6 1.1 0.19 11.7 0.0 4.6 4 2 0 4 4 4 2 PAS fold MEKHLA PF08670.6 gi|304314940|ref|YP_003850087.1| - 7.1e-05 22.3 0.0 0.0037 16.8 0.0 2.7 3 0 0 3 3 3 1 MEKHLA domain DUF3486 PF11985.3 gi|304314940|ref|YP_003850087.1| - 0.014 15.4 0.4 2.2 8.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) PAS_5 PF07310.8 gi|304314940|ref|YP_003850087.1| - 0.043 13.3 0.0 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 PAS domain EMP24_GP25L PF01105.19 gi|304314940|ref|YP_003850087.1| - 0.044 13.5 1.8 0.23 11.1 0.0 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF2762 PF10960.3 gi|304314940|ref|YP_003850087.1| - 0.1 12.3 3.4 6.3 6.5 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2762) VPS11_C PF12451.3 gi|304314940|ref|YP_003850087.1| - 0.93 9.4 5.3 2 8.3 0.4 2.6 2 0 0 2 2 2 0 Vacuolar protein sorting protein 11 C terminal GATase_3 PF07685.9 gi|304314941|ref|YP_003850088.1| - 8.6e-40 135.9 0.5 1.8e-39 134.8 0.1 1.8 3 0 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|304314941|ref|YP_003850088.1| - 9.9e-35 119.7 0.4 1.6e-34 119.0 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|304314941|ref|YP_003850088.1| - 3.3e-23 82.3 0.0 7.3e-23 81.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|304314941|ref|YP_003850088.1| - 7.5e-07 28.9 0.1 0.0036 17.0 0.0 2.7 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|304314941|ref|YP_003850088.1| - 0.00024 20.6 0.0 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|304314941|ref|YP_003850088.1| - 0.00029 20.5 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|304314941|ref|YP_003850088.1| - 0.029 13.8 0.1 0.085 12.2 0.1 1.8 1 1 0 1 1 1 0 Peptidase C26 DUF1611 PF07755.6 gi|304314941|ref|YP_003850088.1| - 0.051 12.2 0.0 3.2 6.3 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1611) AAA_31 PF13614.1 gi|304314941|ref|YP_003850088.1| - 0.054 13.4 0.6 0.47 10.3 0.4 2.3 1 1 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.19 gi|304314941|ref|YP_003850088.1| - 0.061 12.7 0.0 1 8.7 0.0 2.3 2 0 0 2 2 2 0 DJ-1/PfpI family CTP_synth_N PF06418.9 gi|304314941|ref|YP_003850088.1| - 0.12 11.4 0.1 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 CTP synthase N-terminus Na_sulph_symp PF00939.14 gi|304314942|ref|YP_003850089.1| - 1.2e-60 205.7 37.3 1.5e-60 205.4 25.9 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|304314942|ref|YP_003850089.1| - 2e-21 75.9 52.5 3.9e-16 58.5 13.9 2.2 1 1 1 2 2 2 2 Citrate transporter DUF1624 PF07786.7 gi|304314943|ref|YP_003850090.1| - 4.7e-66 222.3 12.7 5.3e-66 222.1 8.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|304314943|ref|YP_003850090.1| - 3.8e-13 49.0 24.0 4.4e-07 29.0 5.7 2.1 1 1 1 2 2 2 2 Acyltransferase family DsbB PF02600.11 gi|304314943|ref|YP_003850090.1| - 0.0077 16.0 1.3 0.0077 16.0 0.9 2.4 1 1 2 3 3 3 1 Disulfide bond formation protein DsbB SyrA PF11089.3 gi|304314943|ref|YP_003850090.1| - 0.027 14.2 0.2 0.077 12.8 0.1 1.8 1 0 0 1 1 1 0 Exopolysaccharide production repressor OpgC_C PF10129.4 gi|304314943|ref|YP_003850090.1| - 0.064 11.9 14.9 0.17 10.5 4.5 2.7 1 1 1 2 2 2 0 OpgC protein TraX PF05857.6 gi|304314943|ref|YP_003850090.1| - 0.31 10.6 16.2 4.9 6.7 11.2 2.2 1 1 0 1 1 1 0 TraX protein ACP_syn_III_C PF08541.5 gi|304314944|ref|YP_003850091.1| - 3.7e-10 39.6 0.0 7.2e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|304314944|ref|YP_003850091.1| - 7.1e-07 28.9 0.1 9.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|304314944|ref|YP_003850091.1| - 2.5e-05 23.9 0.0 0.0052 16.2 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|304314944|ref|YP_003850091.1| - 0.0017 17.9 1.4 0.0017 17.9 1.0 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|304314944|ref|YP_003850091.1| - 0.011 14.7 0.2 0.016 14.2 0.2 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|304314945|ref|YP_003850092.1| - 1.4e-11 43.9 1.0 8.4e-11 41.3 0.8 2.3 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|304314945|ref|YP_003850092.1| - 3.3e-11 42.6 1.8 7.5e-10 38.2 0.3 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|304314945|ref|YP_003850092.1| - 0.00035 20.1 6.3 0.00061 19.3 1.7 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|304314945|ref|YP_003850092.1| - 0.00046 20.0 0.2 0.17 11.7 0.0 2.7 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|304314945|ref|YP_003850092.1| - 0.0062 16.1 0.2 0.68 9.6 0.1 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SpoVAD PF07451.6 gi|304314945|ref|YP_003850092.1| - 0.021 13.2 0.1 0.037 12.4 0.0 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Cpn60_TCP1 PF00118.19 gi|304314946|ref|YP_003850093.1| - 1.2e-175 584.8 17.4 1.3e-175 584.6 12.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.1 gi|304314946|ref|YP_003850093.1| - 0.025 14.4 0.0 0.085 12.7 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) Transglut_core PF01841.14 gi|304314947|ref|YP_003850094.1| - 7.5e-25 87.3 5.3 7.5e-25 87.3 2.0 2.0 2 0 0 2 2 2 1 Transglutaminase-like superfamily PMBR PF09373.5 gi|304314947|ref|YP_003850094.1| - 1.6e-15 56.1 0.0 0.00076 19.3 0.0 4.7 4 0 0 4 4 4 3 Pseudomurein-binding repeat Peptidase_C71 PF12386.3 gi|304314947|ref|YP_003850094.1| - 5.4e-06 25.9 1.1 2e-05 24.0 0.8 2.0 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.7 gi|304314947|ref|YP_003850094.1| - 0.00011 21.5 0.3 0.049 12.9 0.0 3.1 2 1 1 3 3 3 1 Transglutaminase-like domain Transglut_core3 PF13471.1 gi|304314947|ref|YP_003850094.1| - 0.026 14.3 0.9 0.054 13.2 0.6 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily RasGAP_C PF03836.10 gi|304314947|ref|YP_003850094.1| - 0.028 14.0 1.4 0.052 13.2 1.0 1.4 1 0 0 1 1 1 0 RasGAP C-terminus Myb_DNA-bind_4 PF13837.1 gi|304314947|ref|YP_003850094.1| - 0.062 13.4 0.3 10 6.3 0.0 2.5 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain HR1 PF02185.11 gi|304314947|ref|YP_003850094.1| - 0.11 12.2 2.3 0.23 11.2 1.6 1.6 1 0 0 1 1 1 0 Hr1 repeat DUF2162 PF09930.4 gi|304314947|ref|YP_003850094.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Predicted transporter (DUF2162) Cyclase PF04199.8 gi|304314948|ref|YP_003850095.1| - 2.3e-20 72.9 0.0 1.2e-18 67.4 0.0 2.1 1 1 0 1 1 1 1 Putative cyclase DUF320 PF03777.8 gi|304314948|ref|YP_003850095.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Small secreted domain (DUF320) SlyX PF04102.7 gi|304314949|ref|YP_003850096.1| - 0.00022 21.5 0.5 0.00022 21.5 0.3 2.5 3 0 0 3 3 3 1 SlyX Med9 PF07544.8 gi|304314949|ref|YP_003850096.1| - 0.00037 20.1 5.5 0.00063 19.4 3.3 1.8 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 MAD PF05557.8 gi|304314949|ref|YP_003850096.1| - 0.019 13.0 6.6 0.021 12.9 4.6 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein Baculo_PEP_C PF04513.7 gi|304314949|ref|YP_003850096.1| - 0.044 13.5 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Myosin_tail_1 PF01576.14 gi|304314949|ref|YP_003850096.1| - 0.052 11.2 8.3 0.067 10.8 5.7 1.1 1 0 0 1 1 1 0 Myosin tail Spc7 PF08317.6 gi|304314949|ref|YP_003850096.1| - 0.11 11.1 5.8 0.13 10.9 4.0 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein IncA PF04156.9 gi|304314949|ref|YP_003850096.1| - 0.11 12.0 12.5 0.05 13.1 6.4 1.8 1 1 1 2 2 2 0 IncA protein ATG16 PF08614.6 gi|304314949|ref|YP_003850096.1| - 0.13 12.1 5.5 0.08 12.7 2.4 1.6 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF4200 PF13863.1 gi|304314949|ref|YP_003850096.1| - 0.24 11.3 8.7 1.3 8.9 6.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TMF_TATA_bd PF12325.3 gi|304314949|ref|YP_003850096.1| - 0.38 10.4 8.5 7.5 6.3 4.1 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding RBD-FIP PF09457.5 gi|304314949|ref|YP_003850096.1| - 0.56 10.0 3.9 7.1 6.5 1.1 3.1 1 1 1 2 2 2 0 FIP domain FlgN PF05130.7 gi|304314949|ref|YP_003850096.1| - 0.93 9.7 6.9 1.7 8.9 3.8 2.3 1 1 0 1 1 1 0 FlgN protein Med4 PF10018.4 gi|304314949|ref|YP_003850096.1| - 1.6 8.0 5.9 1.8 7.9 2.8 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 NYD-SP28 PF14772.1 gi|304314949|ref|YP_003850096.1| - 3.6 7.7 8.7 7.5 6.6 6.1 1.6 1 1 0 1 1 1 0 Sperm tail PAP2 PF01569.16 gi|304314950|ref|YP_003850097.1| - 1e-24 86.6 6.5 1e-24 86.6 4.5 1.4 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|304314950|ref|YP_003850097.1| - 4.1e-05 23.2 5.2 0.00011 21.8 3.6 1.7 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|304314950|ref|YP_003850097.1| - 0.003 17.7 0.6 0.003 17.7 0.4 2.1 2 1 0 2 2 2 1 PAP2 superfamily C-terminal Bax1-I PF01027.15 gi|304314950|ref|YP_003850097.1| - 0.89 9.1 17.9 1.8 8.1 7.4 2.1 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 YwiC PF14256.1 gi|304314950|ref|YP_003850097.1| - 1.9 8.5 9.5 3.4 7.7 6.6 1.6 1 1 0 1 1 1 0 YwiC-like protein Semialdhyde_dhC PF02774.13 gi|304314951|ref|YP_003850098.1| - 1.1e-45 155.7 0.0 2e-45 154.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|304314951|ref|YP_003850098.1| - 1.4e-36 125.4 0.0 2.5e-36 124.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|304314951|ref|YP_003850098.1| - 3.2e-05 23.8 0.0 5.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|304314951|ref|YP_003850098.1| - 0.00077 18.9 0.1 0.006 16.0 0.0 2.3 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DXP_reductoisom PF02670.11 gi|304314951|ref|YP_003850098.1| - 0.0012 19.3 0.0 0.0053 17.3 0.0 2.0 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh PF03435.13 gi|304314951|ref|YP_003850098.1| - 0.081 11.8 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase FSH1 PF03959.8 gi|304314951|ref|YP_003850098.1| - 0.18 11.2 0.0 0.32 10.4 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DapB_C PF05173.9 gi|304314952|ref|YP_003850099.1| - 3.6e-43 146.4 0.1 5.3e-43 145.9 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|304314952|ref|YP_003850099.1| - 3.4e-36 123.8 2.2 4.8e-36 123.4 0.9 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|304314952|ref|YP_003850099.1| - 4.6e-06 25.8 0.3 6.4e-06 25.4 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Peripla_BP_6 PF13458.1 gi|304314952|ref|YP_003850099.1| - 0.00012 21.6 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein NAD_binding_3 PF03447.11 gi|304314952|ref|YP_003850099.1| - 0.00095 19.5 0.1 0.002 18.5 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|304314952|ref|YP_003850099.1| - 0.0018 18.6 1.3 0.0082 16.4 0.1 2.4 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|304314952|ref|YP_003850099.1| - 0.0039 15.9 0.5 0.012 14.3 0.4 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GFO_IDH_MocA PF01408.17 gi|304314952|ref|YP_003850099.1| - 0.0089 16.5 0.7 0.34 11.4 0.1 2.6 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|304314952|ref|YP_003850099.1| - 0.0089 16.5 0.9 0.022 15.2 0.6 1.7 1 0 0 1 1 1 1 CoA binding domain NAD_binding_10 PF13460.1 gi|304314952|ref|YP_003850099.1| - 0.011 15.7 4.9 0.014 15.4 1.0 2.2 1 1 1 2 2 2 0 NADH(P)-binding Gp_dh_N PF00044.19 gi|304314952|ref|YP_003850099.1| - 0.042 13.8 0.4 0.17 11.7 0.3 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|304314952|ref|YP_003850099.1| - 0.059 12.2 0.1 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Arc_PepC PF06819.6 gi|304314952|ref|YP_003850099.1| - 0.11 12.4 0.1 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain TroA PF01297.12 gi|304314952|ref|YP_003850099.1| - 0.13 11.5 0.2 0.33 10.1 0.1 1.6 1 1 1 2 2 2 0 Periplasmic solute binding protein family DHDPS PF00701.17 gi|304314953|ref|YP_003850100.1| - 3.2e-93 311.4 0.0 3.6e-93 311.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CutC PF03932.9 gi|304314953|ref|YP_003850100.1| - 0.069 12.3 0.5 0.18 11.0 0.0 1.9 2 0 0 2 2 2 0 CutC family AA_kinase PF00696.23 gi|304314954|ref|YP_003850101.1| - 2.1e-50 171.5 1.9 7.4e-49 166.4 0.7 2.1 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|304314954|ref|YP_003850101.1| - 2.8e-23 81.1 0.4 1.1e-11 44.1 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|304314954|ref|YP_003850101.1| - 7e-15 54.1 0.3 2e-06 27.1 0.0 2.9 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|304314954|ref|YP_003850101.1| - 5.2e-05 23.4 0.7 0.18 12.1 0.1 2.5 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|304314954|ref|YP_003850101.1| - 0.00016 21.3 0.2 0.58 9.9 0.0 2.8 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.5 gi|304314954|ref|YP_003850101.1| - 0.005 16.6 0.1 0.1 12.4 0.0 2.9 2 1 1 3 3 3 1 Domain of unknown function (DUF2007) LpxK PF02606.9 gi|304314954|ref|YP_003850101.1| - 0.1 11.5 0.2 0.2 10.6 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Ribosomal_S17e PF00833.13 gi|304314955|ref|YP_003850102.1| - 3.4e-21 75.2 0.7 3.6e-21 75.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 CM_2 PF01817.16 gi|304314956|ref|YP_003850103.1| - 2.6e-19 69.0 7.0 3.3e-19 68.7 4.8 1.1 1 0 0 1 1 1 1 Chorismate mutase type II ATP-synt_DE PF00401.15 gi|304314956|ref|YP_003850103.1| - 0.015 15.1 0.8 0.03 14.2 0.6 1.6 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Phage_CII PF05269.6 gi|304314956|ref|YP_003850103.1| - 0.052 13.5 0.6 0.35 10.9 0.4 2.0 1 1 0 1 1 1 0 Bacteriophage CII protein SRP_SPB PF02978.14 gi|304314956|ref|YP_003850103.1| - 0.076 13.2 0.9 0.096 12.9 0.6 1.3 1 1 0 1 1 1 0 Signal peptide binding domain DUF2805 PF10985.3 gi|304314956|ref|YP_003850103.1| - 0.11 12.4 0.1 0.23 11.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2805) GHMP_kinases_N PF00288.21 gi|304314957|ref|YP_003850104.1| - 1.9e-12 47.0 1.9 1.9e-12 47.0 1.3 2.4 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|304314957|ref|YP_003850104.1| - 1.1e-05 25.4 0.4 3.1e-05 24.1 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Peptidase_S49 PF01343.13 gi|304314958|ref|YP_003850105.1| - 3.6e-53 179.4 0.5 4.9e-53 179.0 0.4 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.11 gi|304314958|ref|YP_003850105.1| - 0.0001 21.2 0.1 0.00012 20.9 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|304314958|ref|YP_003850105.1| - 0.00053 19.1 0.0 0.16 11.0 0.0 3.0 3 0 0 3 3 3 1 Enoyl-CoA hydratase/isomerase family CLP_protease PF00574.18 gi|304314958|ref|YP_003850105.1| - 0.0013 18.4 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Clp protease Succ_CoA_lig PF13607.1 gi|304314958|ref|YP_003850105.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain KR PF08659.5 gi|304314958|ref|YP_003850105.1| - 0.032 13.8 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 KR domain UPF0052 PF01933.13 gi|304314958|ref|YP_003850105.1| - 0.05 12.9 0.0 0.11 11.7 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0052 Ligase_CoA PF00549.14 gi|304314958|ref|YP_003850105.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 CoA-ligase adh_short PF00106.20 gi|304314958|ref|YP_003850105.1| - 0.088 12.7 0.0 0.59 10.0 0.0 2.1 2 1 0 2 2 2 0 short chain dehydrogenase Thioredoxin_3 PF13192.1 gi|304314959|ref|YP_003850106.1| - 1.9e-18 66.0 0.4 2.3e-18 65.7 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|304314959|ref|YP_003850106.1| - 3.8e-13 49.2 0.2 4.7e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|304314959|ref|YP_003850106.1| - 1.9e-06 27.9 0.2 0.0004 20.4 0.1 2.0 1 1 1 2 2 2 2 Thioredoxin DUF836 PF05768.9 gi|304314959|ref|YP_003850106.1| - 2.9e-06 27.4 0.0 3.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin PF00085.15 gi|304314959|ref|YP_003850106.1| - 1.2e-05 24.8 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|304314959|ref|YP_003850106.1| - 1.4e-05 24.7 0.2 0.011 15.2 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|304314959|ref|YP_003850106.1| - 0.00042 20.4 0.3 0.0012 18.9 0.2 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DUF1223 PF06764.6 gi|304314959|ref|YP_003850106.1| - 0.035 13.9 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1223) CbiD PF01888.12 gi|304314960|ref|YP_003850107.1| - 5.8e-106 353.2 0.9 7.1e-106 352.9 0.6 1.1 1 0 0 1 1 1 1 CbiD DUF2250 PF10007.4 gi|304314960|ref|YP_003850107.1| - 0.094 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MoaC PF01967.16 gi|304314961|ref|YP_003850108.1| - 2.7e-54 182.5 2.4 3.1e-54 182.3 1.7 1.0 1 0 0 1 1 1 1 MoaC family RHH_1 PF01402.16 gi|304314961|ref|YP_003850108.1| - 0.29 11.0 3.7 9.1 6.3 0.0 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DEAD PF00270.24 gi|304314962|ref|YP_003850109.1| - 1.2e-16 60.6 0.0 4.5e-16 58.7 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|304314962|ref|YP_003850109.1| - 4.3e-09 36.4 1.9 8.5e-08 32.2 0.3 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|304314962|ref|YP_003850109.1| - 9.3e-08 31.8 0.1 2.2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|304314962|ref|YP_003850109.1| - 1.4e-07 31.3 0.1 5.1e-06 26.2 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|304314962|ref|YP_003850109.1| - 6.7e-07 29.3 0.0 0.00069 19.4 0.0 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|304314962|ref|YP_003850109.1| - 2.5e-05 23.7 0.5 0.0015 18.0 0.0 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif IstB_IS21 PF01695.12 gi|304314962|ref|YP_003850109.1| - 0.0016 17.8 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Zot PF05707.7 gi|304314962|ref|YP_003850109.1| - 0.0042 16.5 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) HHH_3 PF12836.2 gi|304314962|ref|YP_003850109.1| - 0.0065 16.3 0.1 0.11 12.4 0.1 2.8 2 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|304314962|ref|YP_003850109.1| - 0.0067 16.5 0.1 0.022 14.9 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain PhoH PF02562.11 gi|304314962|ref|YP_003850109.1| - 0.0099 15.1 0.0 0.023 13.9 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein DUF2115 PF09888.4 gi|304314963|ref|YP_003850110.1| - 6.2e-37 127.2 0.1 1.4e-36 126.0 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF2115 PF09888.4 gi|304314964|ref|YP_003850111.1| - 4.2e-47 160.2 0.0 4.8e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF308 PF03729.8 gi|304314965|ref|YP_003850112.1| - 3.7e-08 33.2 51.2 5.8e-06 26.2 15.9 3.1 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) Herpes_UL43 PF05072.8 gi|304314965|ref|YP_003850112.1| - 1.3 7.6 12.2 1.9 7.1 8.4 1.3 1 1 0 1 1 1 0 Herpesvirus UL43 protein DUF4383 PF14325.1 gi|304314965|ref|YP_003850112.1| - 4.8 7.2 28.6 0.38 10.7 12.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4383) DUF2098 PF09871.4 gi|304314966|ref|YP_003850113.1| - 4.8e-27 93.7 0.7 5.5e-27 93.5 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.1 gi|304314966|ref|YP_003850113.1| - 0.0047 17.1 0.2 0.019 15.2 0.1 1.9 2 0 0 2 2 2 1 YdfZ protein PRC PF05239.11 gi|304314967|ref|YP_003850114.1| - 3.2e-13 49.3 1.0 3.6e-13 49.1 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain CBS PF00571.23 gi|304314968|ref|YP_003850115.1| - 3.9e-31 106.5 2.4 4e-15 55.3 0.1 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|304314968|ref|YP_003850115.1| - 1.3e-17 63.4 24.3 2e-15 56.2 12.4 3.2 1 1 1 2 2 2 1 Peptidase family M50 Peptidase_M50B PF13398.1 gi|304314968|ref|YP_003850115.1| - 0.00014 21.3 3.1 0.00014 21.3 2.1 2.1 2 0 0 2 2 2 1 Peptidase M50B-like DUF1129 PF06570.6 gi|304314968|ref|YP_003850115.1| - 9.7 5.4 8.3 0.72 9.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Radical_SAM PF04055.16 gi|304314969|ref|YP_003850116.1| - 0.0018 18.4 0.7 0.0029 17.7 0.2 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DUF2192 PF09958.4 gi|304314969|ref|YP_003850116.1| - 0.018 14.3 0.1 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2192) Radical_SAM PF04055.16 gi|304314970|ref|YP_003850117.1| - 5.5e-14 52.6 0.1 8e-13 48.8 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|304314970|ref|YP_003850117.1| - 3.6e-08 33.3 2.0 1.3e-07 31.5 0.1 2.7 3 1 0 3 3 3 1 Acetyltransferase (GNAT) family MTTB PF06253.6 gi|304314970|ref|YP_003850117.1| - 0.0018 16.1 0.0 0.0025 15.6 0.0 1.1 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) Acetyltransf_7 PF13508.1 gi|304314970|ref|YP_003850117.1| - 0.058 13.5 0.4 1.1 9.4 0.2 2.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|304314970|ref|YP_003850117.1| - 0.071 13.2 0.1 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DeoC PF01791.4 gi|304314971|ref|YP_003850118.1| - 8.2e-57 192.1 7.1 9.2e-57 192.0 4.9 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|304314971|ref|YP_003850118.1| - 8.5e-05 21.6 1.3 0.00014 20.9 0.9 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|304314971|ref|YP_003850118.1| - 0.00082 18.3 2.3 0.0054 15.7 0.6 2.2 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|304314971|ref|YP_003850118.1| - 0.01 15.1 1.1 0.046 12.9 0.2 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein PcrB PF01884.12 gi|304314971|ref|YP_003850118.1| - 0.01 15.1 1.4 0.01 15.1 1.0 1.5 1 1 0 1 1 1 0 PcrB family Dus PF01207.12 gi|304314971|ref|YP_003850118.1| - 0.072 11.9 0.5 0.16 10.7 0.3 1.6 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) Cyclophil_like PF04126.8 gi|304314972|ref|YP_003850119.1| - 4.3e-38 129.5 0.0 4.8e-38 129.4 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|304314972|ref|YP_003850119.1| - 5.4e-05 22.5 0.0 6.8e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Radical_SAM PF04055.16 gi|304314973|ref|YP_003850120.1| - 9.9e-19 68.1 0.5 4.7e-18 65.9 0.1 2.2 3 0 0 3 3 3 1 Radical SAM superfamily CBFD_NFYB_HMF PF00808.18 gi|304314974|ref|YP_003850121.1| - 7.7e-23 80.3 1.2 8.4e-23 80.2 0.8 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|304314974|ref|YP_003850121.1| - 1.9e-14 53.5 0.1 2.1e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|304314974|ref|YP_003850121.1| - 3.4e-05 23.7 0.6 3.5e-05 23.6 0.4 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.8 gi|304314974|ref|YP_003850121.1| - 4e-05 23.8 0.1 5e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|304314974|ref|YP_003850121.1| - 0.00011 21.6 0.1 0.00011 21.5 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T CENP-S PF15630.1 gi|304314974|ref|YP_003850121.1| - 0.00042 20.4 0.1 0.00048 20.2 0.1 1.3 1 1 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|304314974|ref|YP_003850121.1| - 0.0089 15.7 0.0 0.01 15.5 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated ACPS PF01648.15 gi|304314974|ref|YP_003850121.1| - 0.046 13.5 0.4 0.061 13.1 0.2 1.1 1 0 0 1 1 1 0 4'-phosphopantetheinyl transferase superfamily EPSP_synthase PF00275.15 gi|304314974|ref|YP_003850121.1| - 0.082 11.3 0.2 0.083 11.2 0.1 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CENP-X PF09415.5 gi|304314974|ref|YP_003850121.1| - 0.17 11.7 1.0 0.22 11.3 0.7 1.2 1 0 0 1 1 1 0 CENP-S associating Centromere protein X ATC_hydrolase PF14196.1 gi|304314974|ref|YP_003850121.1| - 0.18 12.1 0.9 0.18 12.1 0.6 1.0 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase HK97-gp10_like PF04883.7 gi|304314974|ref|YP_003850121.1| - 0.18 12.7 1.9 0.22 12.5 1.3 1.2 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component DUF4398 PF14346.1 gi|304314974|ref|YP_003850121.1| - 0.57 10.2 4.7 0.7 9.9 3.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Rubrerythrin PF02915.12 gi|304314975|ref|YP_003850122.1| - 3.8e-26 92.0 13.2 2.4e-25 89.4 9.2 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|304314975|ref|YP_003850122.1| - 0.0003 20.5 6.3 0.0004 20.1 4.4 1.3 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|304314975|ref|YP_003850122.1| - 0.019 14.7 0.4 0.031 14.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|304314975|ref|YP_003850122.1| - 0.059 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L37e Rubredoxin PF00301.15 gi|304314975|ref|YP_003850122.1| - 0.11 12.4 4.7 3.3 7.6 3.3 2.4 1 1 0 1 1 1 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|304314975|ref|YP_003850122.1| - 0.28 10.7 1.8 0.49 9.9 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_L12 PF00542.14 gi|304314975|ref|YP_003850122.1| - 0.44 10.5 2.2 16 5.5 0.0 2.4 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain zf-ribbon_3 PF13248.1 gi|304314975|ref|YP_003850122.1| - 1.1 8.5 3.5 13 5.1 0.1 2.3 1 1 2 3 3 3 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|304314975|ref|YP_003850122.1| - 1.4 8.3 7.9 0.49 9.8 1.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain PAS_9 PF13426.1 gi|304314976|ref|YP_003850123.1| - 1.4e-34 118.6 1.9 2.5e-13 50.3 0.2 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|304314976|ref|YP_003850123.1| - 1.4e-30 105.4 0.4 7.9e-13 48.1 0.1 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|304314976|ref|YP_003850123.1| - 2.4e-30 104.2 2.8 2.4e-30 104.2 1.9 2.5 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|304314976|ref|YP_003850123.1| - 1.4e-22 78.7 0.0 2.9e-07 30.1 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|304314976|ref|YP_003850123.1| - 2e-19 69.6 0.0 1.6e-05 24.9 0.0 3.6 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|304314976|ref|YP_003850123.1| - 5.7e-12 45.3 0.3 1.8e-11 43.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|304314976|ref|YP_003850123.1| - 2.7e-09 36.8 0.0 7.3e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|304314976|ref|YP_003850123.1| - 5.1e-07 29.7 0.2 0.056 13.5 0.0 4.0 3 1 1 4 4 4 2 PAS fold PAS_7 PF12860.2 gi|304314976|ref|YP_003850123.1| - 9.6e-06 25.5 0.6 0.0044 17.0 0.1 3.2 2 1 0 2 2 2 1 PAS fold HWE_HK PF07536.9 gi|304314976|ref|YP_003850123.1| - 1e-05 25.8 4.2 1.3e-05 25.4 0.7 2.6 2 0 0 2 2 2 1 HWE histidine kinase DUF4118 PF13493.1 gi|304314976|ref|YP_003850123.1| - 4.9e-05 23.4 12.2 7.8e-05 22.8 8.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) ECF-ribofla_trS PF07155.7 gi|304314976|ref|YP_003850123.1| - 0.0025 17.5 3.4 0.0045 16.7 2.4 1.4 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF4401 PF14351.1 gi|304314976|ref|YP_003850123.1| - 0.004 16.1 3.9 0.0058 15.6 2.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) PAS_11 PF14598.1 gi|304314976|ref|YP_003850123.1| - 0.0045 16.9 0.0 2.9 7.9 0.0 3.1 3 0 0 3 3 3 1 PAS domain UPF0004 PF00919.15 gi|304314978|ref|YP_003850125.1| - 9.1e-24 83.1 0.0 1.7e-23 82.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|304314978|ref|YP_003850125.1| - 1e-20 74.5 0.1 2e-20 73.5 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|304314978|ref|YP_003850125.1| - 1e-10 41.2 0.2 1.8e-10 40.4 0.1 1.4 1 0 0 1 1 1 1 TRAM domain PCMT PF01135.14 gi|304314979|ref|YP_003850126.1| - 1.6e-72 243.4 0.0 1.9e-72 243.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|304314979|ref|YP_003850126.1| - 5.6e-08 32.5 0.0 8.3e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|304314979|ref|YP_003850126.1| - 3.1e-07 30.1 0.0 4.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|304314979|ref|YP_003850126.1| - 1.8e-06 27.1 0.0 2.5e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|304314979|ref|YP_003850126.1| - 1.2e-05 25.8 0.0 2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|304314979|ref|YP_003850126.1| - 1.6e-05 24.9 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|304314979|ref|YP_003850126.1| - 0.00013 21.0 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.12 gi|304314979|ref|YP_003850126.1| - 0.00047 19.1 0.1 0.00064 18.6 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|304314979|ref|YP_003850126.1| - 0.0066 17.2 0.0 0.01 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|304314979|ref|YP_003850126.1| - 0.0081 15.2 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|304314979|ref|YP_003850126.1| - 0.0091 15.3 0.0 0.018 14.4 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|304314979|ref|YP_003850126.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|304314979|ref|YP_003850126.1| - 0.023 13.8 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|304314979|ref|YP_003850126.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Lar_restr_allev PF14354.1 gi|304314980|ref|YP_003850127.1| - 0.00093 19.4 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|304314980|ref|YP_003850127.1| - 0.0028 16.9 1.0 0.88 8.9 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Ogr_Delta PF04606.7 gi|304314980|ref|YP_003850127.1| - 0.0049 16.4 0.2 0.011 15.4 0.1 1.5 1 1 0 1 1 1 1 Ogr/Delta-like zinc finger zf-C2H2 PF00096.21 gi|304314980|ref|YP_003850127.1| - 0.019 15.2 0.4 6.5 7.3 0.0 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|304314980|ref|YP_003850127.1| - 0.032 13.9 2.1 0.54 10.0 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|304314980|ref|YP_003850127.1| - 0.056 13.4 1.0 8.5 6.4 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|304314980|ref|YP_003850127.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-CSL PF05207.8 gi|304314980|ref|YP_003850127.1| - 0.2 11.1 0.9 0.44 10.0 0.6 1.6 1 0 0 1 1 1 0 CSL zinc finger Aconitase_C PF00694.14 gi|304314981|ref|YP_003850128.1| - 1.2e-21 77.1 0.2 4.6e-20 72.0 0.1 2.1 1 1 0 1 1 1 1 Aconitase C-terminal domain GHMP_kinases_C PF08544.8 gi|304314982|ref|YP_003850129.1| - 3.3e-09 36.8 0.0 6.4e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|304314982|ref|YP_003850129.1| - 1.1e-07 31.7 1.5 2.5e-07 30.6 1.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain Radical_SAM PF04055.16 gi|304314983|ref|YP_003850130.1| - 1e-23 84.3 0.3 1.6e-21 77.2 0.0 2.4 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|304314983|ref|YP_003850130.1| - 2.3e-09 37.2 0.1 4.3e-08 33.1 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|304314983|ref|YP_003850130.1| - 3.8e-09 36.8 0.4 2.6e-08 34.0 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF46 PF01864.12 gi|304314984|ref|YP_003850131.1| - 2.8e-71 239.0 14.9 3.2e-71 238.7 10.3 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|304314984|ref|YP_003850131.1| - 8.2e-05 22.3 5.3 8.2e-05 22.3 3.7 2.2 2 1 1 3 3 3 1 Cytidylyltransferase family Gly-zipper_OmpA PF13436.1 gi|304314984|ref|YP_003850131.1| - 0.014 15.0 3.5 0.026 14.1 2.4 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF204 PF02659.10 gi|304314984|ref|YP_003850131.1| - 0.2 11.7 12.2 0.075 13.1 3.0 3.0 1 1 1 2 2 2 0 Domain of unknown function DUF Gly-zipper_YMGG PF13441.1 gi|304314984|ref|YP_003850131.1| - 3 7.4 20.6 0.25 10.8 9.0 2.7 3 1 1 4 4 4 0 YMGG-like Gly-zipper Hydantoinase_A PF01968.13 gi|304314986|ref|YP_003850133.1| - 3.4e-18 65.7 6.3 8.5e-15 54.6 2.7 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.1 gi|304314986|ref|YP_003850133.1| - 2.7e-05 22.6 1.9 0.00059 18.2 0.2 2.5 3 0 0 3 3 3 2 MutL protein FtsA PF14450.1 gi|304314986|ref|YP_003850133.1| - 0.002 17.9 1.5 2.8 7.8 0.0 3.6 4 0 0 4 4 4 2 Cell division protein FtsA Hydant_A_N PF05378.8 gi|304314986|ref|YP_003850133.1| - 0.063 12.7 4.7 0.97 8.9 0.2 2.9 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region ATP-grasp_3 PF02655.9 gi|304314987|ref|YP_003850134.1| - 1e-44 152.2 0.0 1.4e-44 151.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|304314987|ref|YP_003850134.1| - 4.8e-13 48.5 0.1 4.5e-07 28.9 0.1 2.2 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|304314987|ref|YP_003850134.1| - 5.8e-11 42.4 0.0 1.4e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|304314987|ref|YP_003850134.1| - 0.00034 20.2 0.0 0.0013 18.3 0.0 1.9 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.1 gi|304314987|ref|YP_003850134.1| - 0.087 11.9 0.0 1.7 7.6 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp DUF762 PF05555.6 gi|304314987|ref|YP_003850134.1| - 0.17 11.0 0.0 0.39 9.9 0.0 1.6 1 1 1 2 2 2 0 Coxiella burnetii protein of unknown function (DUF762) UDPG_MGDP_dh_N PF03721.9 gi|304314988|ref|YP_003850135.1| - 6.9e-57 191.8 0.2 1.2e-56 191.0 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|304314988|ref|YP_003850135.1| - 4e-32 110.2 0.0 9e-32 109.1 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|304314988|ref|YP_003850135.1| - 2.1e-16 59.9 0.0 6.6e-16 58.3 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|304314988|ref|YP_003850135.1| - 3.5e-07 30.2 0.3 1.4e-06 28.2 0.1 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|304314988|ref|YP_003850135.1| - 5.6e-07 29.4 0.6 2.9e-06 27.0 0.1 2.3 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|304314988|ref|YP_003850135.1| - 3.6e-06 26.2 0.0 0.018 14.2 0.0 3.0 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|304314988|ref|YP_003850135.1| - 1.3e-05 24.9 0.4 3.8e-05 23.4 0.2 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|304314988|ref|YP_003850135.1| - 0.0046 17.3 1.7 0.13 12.7 0.2 3.2 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|304314988|ref|YP_003850135.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|304314988|ref|YP_003850135.1| - 0.02 14.7 0.3 0.095 12.5 0.2 2.3 2 1 0 2 2 2 0 ThiF family NAD_binding_11 PF14833.1 gi|304314988|ref|YP_003850135.1| - 0.029 14.4 0.0 0.41 10.7 0.1 2.3 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AlaDh_PNT_C PF01262.16 gi|304314988|ref|YP_003850135.1| - 0.03 13.8 0.7 0.36 10.3 0.1 2.7 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|304314988|ref|YP_003850135.1| - 0.051 13.8 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain Methyltransf_18 PF12847.2 gi|304314988|ref|YP_003850135.1| - 0.057 13.9 0.0 1.3 9.5 0.0 2.6 2 2 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.13 gi|304314988|ref|YP_003850135.1| - 0.058 13.3 0.9 0.18 11.7 0.0 2.5 3 1 0 3 3 2 0 TrkA-N domain Epimerase_2 PF02350.14 gi|304314989|ref|YP_003850136.1| - 2.7e-118 394.7 0.0 3.6e-118 394.3 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.1 gi|304314989|ref|YP_003850136.1| - 0.0031 17.3 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like MGDG_synth PF06925.6 gi|304314989|ref|YP_003850136.1| - 0.11 12.3 0.0 2 8.3 0.0 2.4 2 0 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase DUF460 PF04312.8 gi|304314990|ref|YP_003850137.1| - 1.2e-25 89.5 2.1 1.8e-25 89.0 0.0 2.3 2 1 1 3 3 3 1 Protein of unknown function (DUF460) GAS PF13851.1 gi|304314990|ref|YP_003850137.1| - 0.0079 15.4 6.7 0.0079 15.4 4.7 3.7 3 1 1 4 4 4 1 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.3 gi|304314990|ref|YP_003850137.1| - 0.0096 15.7 7.8 0.0096 15.7 5.4 3.8 4 0 0 4 4 4 1 TATA element modulatory factor 1 DNA binding Hpr_kinase_N PF02603.11 gi|304314990|ref|YP_003850137.1| - 0.028 14.1 0.0 4.6 6.9 0.0 2.8 2 0 0 2 2 2 0 HPr Serine kinase N terminus DivIC PF04977.10 gi|304314990|ref|YP_003850137.1| - 0.06 12.8 19.0 0.04 13.3 2.5 3.6 3 0 0 3 3 3 0 Septum formation initiator Macoilin PF09726.4 gi|304314990|ref|YP_003850137.1| - 0.76 7.9 18.0 0.058 11.6 7.2 2.1 2 0 0 2 2 2 0 Transmembrane protein DUF4250 PF14056.1 gi|304314990|ref|YP_003850137.1| - 2 8.2 5.7 0.52 10.0 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) M PF02370.11 gi|304314990|ref|YP_003850137.1| - 2.8 8.5 8.7 0.94 10.0 2.2 3.3 3 0 0 3 3 2 0 M protein repeat ATG16 PF08614.6 gi|304314990|ref|YP_003850137.1| - 3.2 7.5 24.5 0.82 9.4 8.6 3.1 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|304314990|ref|YP_003850137.1| - 3.6 7.4 7.1 1 9.1 0.9 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) Bap31 PF05529.7 gi|304314990|ref|YP_003850137.1| - 6 6.2 10.5 2.8 7.3 3.3 2.7 2 1 0 2 2 2 0 B-cell receptor-associated protein 31-like YlqD PF11068.3 gi|304314990|ref|YP_003850137.1| - 9.9 6.2 16.7 0.34 10.9 5.4 2.9 3 1 0 3 3 3 0 YlqD protein PseudoU_synth_1 PF01416.15 gi|304314991|ref|YP_003850138.1| - 3.2e-34 117.5 0.0 4.9e-18 65.4 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase EamA PF00892.15 gi|304314992|ref|YP_003850139.1| - 2.5e-45 153.5 38.2 2.9e-30 104.8 6.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|304314992|ref|YP_003850139.1| - 3.8e-07 29.8 6.0 3.8e-07 29.8 4.2 2.8 2 1 0 2 2 2 1 Triose-phosphate Transporter family Nuc_sug_transp PF04142.10 gi|304314992|ref|YP_003850139.1| - 0.0034 16.5 0.3 0.0034 16.5 0.2 2.5 2 1 0 2 2 2 1 Nucleotide-sugar transporter EmrE PF13536.1 gi|304314992|ref|YP_003850139.1| - 0.016 15.3 36.0 0.063 13.4 3.5 3.1 2 1 0 3 3 3 0 Multidrug resistance efflux transporter Baculo_E56 PF04639.7 gi|304314992|ref|YP_003850139.1| - 0.13 10.9 0.6 5.8 5.4 0.0 2.5 2 0 0 2 2 2 0 Baculoviral E56 protein, specific to ODV envelope V4R PF02830.13 gi|304314993|ref|YP_003850140.1| - 1.7e-18 66.2 0.3 2.8e-18 65.5 0.2 1.4 1 0 0 1 1 1 1 V4R domain His_biosynth PF00977.16 gi|304314994|ref|YP_003850141.1| - 1.2e-77 260.2 1.1 1.4e-77 260.0 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|304314994|ref|YP_003850141.1| - 3.6e-10 39.5 0.6 0.00014 21.1 0.0 2.4 2 1 0 2 2 2 2 PcrB family Dus PF01207.12 gi|304314994|ref|YP_003850141.1| - 1.4e-09 37.2 0.1 0.00042 19.2 0.1 2.4 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|304314994|ref|YP_003850141.1| - 3.2e-09 36.2 0.1 0.00015 20.9 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|304314994|ref|YP_003850141.1| - 8e-07 28.5 0.2 0.00013 21.2 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Trp_syntA PF00290.15 gi|304314994|ref|YP_003850141.1| - 2.5e-06 26.2 0.3 0.005 15.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain PEP_mutase PF13714.1 gi|304314994|ref|YP_003850141.1| - 7.4e-06 25.3 0.0 0.0064 15.7 0.0 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase DHO_dh PF01180.16 gi|304314994|ref|YP_003850141.1| - 1.3e-05 24.3 0.2 0.00044 19.3 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|304314994|ref|YP_003850141.1| - 0.00011 21.3 0.3 0.09 11.8 0.0 2.8 2 1 1 3 3 3 2 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|304314994|ref|YP_003850141.1| - 0.00023 20.2 0.0 0.0048 15.9 0.0 2.3 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|304314994|ref|YP_003850141.1| - 0.0016 17.4 0.2 0.89 8.3 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|304314994|ref|YP_003850141.1| - 0.0033 16.5 0.2 1.8 7.5 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|304314994|ref|YP_003850141.1| - 0.0036 16.2 0.3 0.06 12.1 0.0 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|304314994|ref|YP_003850141.1| - 0.0043 16.0 0.1 0.28 10.1 0.0 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|304314994|ref|YP_003850141.1| - 0.0047 15.9 0.1 0.013 14.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF561) DeoC PF01791.4 gi|304314994|ref|YP_003850141.1| - 0.021 14.1 0.1 0.18 11.1 0.0 2.0 2 0 0 2 2 2 0 DeoC/LacD family aldolase Ribul_P_3_epim PF00834.14 gi|304314994|ref|YP_003850141.1| - 0.073 12.1 0.3 1.4 7.9 0.2 2.2 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family CTP_transf_2 PF01467.21 gi|304314995|ref|YP_003850142.1| - 9.3e-16 58.2 0.0 1.7e-15 57.4 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|304314995|ref|YP_003850142.1| - 7.5e-05 22.4 0.1 0.00033 20.3 0.0 2.0 1 1 0 1 1 1 1 FAD synthetase SAP PF02037.22 gi|304314995|ref|YP_003850142.1| - 0.019 14.4 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 SAP domain Lactamase_B_3 PF13483.1 gi|304314995|ref|YP_003850142.1| - 0.056 13.1 0.1 0.58 9.8 0.1 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Transglut_core PF01841.14 gi|304314996|ref|YP_003850143.1| - 2.6e-24 85.6 0.7 2.6e-24 85.6 0.5 2.4 2 1 1 3 3 3 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.3 gi|304314996|ref|YP_003850143.1| - 2.9e-08 33.2 1.3 2.9e-08 33.2 0.9 2.6 2 1 1 3 3 3 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.7 gi|304314996|ref|YP_003850143.1| - 3.9e-05 22.9 0.1 0.2 10.9 0.0 2.4 1 1 1 2 2 2 2 Transglutaminase-like domain Semialdhyde_dh PF01118.19 gi|304314997|ref|YP_003850144.1| - 3.6e-36 124.1 0.0 5.1e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|304314997|ref|YP_003850144.1| - 1.5e-29 103.1 0.0 2.2e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|304314997|ref|YP_003850144.1| - 2.4e-05 24.8 0.0 4.4e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|304314997|ref|YP_003850144.1| - 0.00031 20.6 0.0 0.00059 19.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.1 gi|304314997|ref|YP_003850144.1| - 0.0079 16.3 0.0 0.06 13.5 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain NAD_binding_10 PF13460.1 gi|304314997|ref|YP_003850144.1| - 0.022 14.7 0.0 0.075 13.0 0.0 1.9 1 1 0 1 1 1 0 NADH(P)-binding NAD_binding_3 PF03447.11 gi|304314997|ref|YP_003850144.1| - 0.035 14.4 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Flavodoxin_4 PF12682.2 gi|304314998|ref|YP_003850145.1| - 9.7e-20 70.4 0.0 1.3e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|304314998|ref|YP_003850145.1| - 1.3e-10 40.8 0.0 8.3e-06 25.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|304314998|ref|YP_003850145.1| - 1e-09 38.5 0.0 3.8e-07 30.2 0.0 2.2 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|304314998|ref|YP_003850145.1| - 3.5e-09 36.8 0.0 0.00035 20.5 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|304314998|ref|YP_003850145.1| - 1.3e-06 27.9 0.0 1.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|304314998|ref|YP_003850145.1| - 0.038 13.4 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold SecD_SecF PF02355.11 gi|304314999|ref|YP_003850146.1| - 2e-46 157.6 14.1 3.3e-46 156.8 9.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.13 gi|304314999|ref|YP_003850146.1| - 2.3e-07 29.1 12.2 3e-07 28.7 8.5 1.1 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.9 gi|304314999|ref|YP_003850146.1| - 0.0037 16.4 0.0 0.015 14.5 0.0 2.1 1 0 0 1 1 1 1 SecD/SecF GG Motif Sterol-sensing PF12349.3 gi|304314999|ref|YP_003850146.1| - 0.094 12.1 10.6 0.018 14.4 4.5 1.9 1 1 1 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation Trp_oprn_chp PF09534.5 gi|304314999|ref|YP_003850146.1| - 0.75 9.3 6.7 1.4 8.4 3.1 2.1 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) SecD_SecF PF02355.11 gi|304315000|ref|YP_003850147.1| - 1.8e-15 56.6 11.3 3.4e-15 55.7 7.8 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|304315000|ref|YP_003850147.1| - 1.8e-08 33.4 12.5 3.4e-08 32.5 8.6 1.4 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|304315000|ref|YP_003850147.1| - 6.5e-06 25.0 0.1 1.8e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif PyrI PF01948.13 gi|304315001|ref|YP_003850148.1| - 1.8e-39 133.6 1.0 2.4e-39 133.2 0.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|304315001|ref|YP_003850148.1| - 6.4e-22 76.7 2.7 9.9e-22 76.1 1.9 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PMBR PF09373.5 gi|304315002|ref|YP_003850149.1| - 4.9e-15 54.6 0.9 1.3e-07 31.2 0.1 3.0 3 0 0 3 3 3 2 Pseudomurein-binding repeat CW_binding_2 PF04122.7 gi|304315002|ref|YP_003850149.1| - 9.8e-07 28.8 0.9 0.00015 21.8 0.1 3.2 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 AstE_AspA PF04952.9 gi|304315003|ref|YP_003850150.1| - 5.2e-10 38.6 0.0 5.3e-09 35.3 0.0 2.0 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|304315003|ref|YP_003850150.1| - 0.005 16.4 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 Zinc carboxypeptidase DUF2119 PF09892.4 gi|304315003|ref|YP_003850150.1| - 0.0051 16.1 0.0 0.0078 15.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) GMC_oxred_N PF00732.14 gi|304315004|ref|YP_003850151.1| - 3.3e-18 65.8 0.1 2.9e-16 59.5 0.0 2.9 2 1 0 2 2 2 1 GMC oxidoreductase DAO PF01266.19 gi|304315004|ref|YP_003850151.1| - 5.1e-17 61.8 1.8 6e-09 35.2 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase GMC_oxred_C PF05199.8 gi|304315004|ref|YP_003850151.1| - 9.2e-12 45.4 0.0 1.7e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.19 gi|304315004|ref|YP_003850151.1| - 3.1e-07 29.5 3.5 0.0019 17.1 0.1 2.8 2 1 1 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|304315004|ref|YP_003850151.1| - 6.7e-06 26.0 1.0 2.1e-05 24.4 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|304315004|ref|YP_003850151.1| - 0.00046 20.1 1.4 0.0061 16.4 1.0 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|304315004|ref|YP_003850151.1| - 0.00056 19.0 0.7 0.00056 19.0 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|304315004|ref|YP_003850151.1| - 0.0018 18.6 0.2 0.0052 17.1 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|304315004|ref|YP_003850151.1| - 0.0028 17.1 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|304315004|ref|YP_003850151.1| - 0.0029 16.5 0.0 0.3 9.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|304315004|ref|YP_003850151.1| - 0.0066 15.5 0.6 0.048 12.7 0.1 2.2 2 1 0 2 2 2 1 Thi4 family Fer4_10 PF13237.1 gi|304315004|ref|YP_003850151.1| - 0.0083 15.9 0.4 0.016 14.9 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315004|ref|YP_003850151.1| - 0.01 15.6 1.2 0.023 14.5 0.9 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain TrkA_N PF02254.13 gi|304315004|ref|YP_003850151.1| - 0.029 14.3 0.7 0.16 11.9 0.0 2.5 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|304315004|ref|YP_003850151.1| - 0.03 14.0 0.6 5.1 6.8 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|304315004|ref|YP_003850151.1| - 0.031 12.7 0.2 0.36 9.2 0.1 2.2 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|304315004|ref|YP_003850151.1| - 0.047 13.7 0.0 0.37 10.8 0.0 2.4 3 1 1 4 4 3 0 Pyridine nucleotide-disulphide oxidoreductase AHS1 PF02682.11 gi|304315004|ref|YP_003850151.1| - 0.064 12.7 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 Lycopene_cycl PF05834.7 gi|304315004|ref|YP_003850151.1| - 0.066 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_2 PF12797.2 gi|304315004|ref|YP_003850151.1| - 0.08 12.8 3.0 0.18 11.7 2.1 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315005|ref|YP_003850152.1| - 6e-16 58.5 35.7 4.1e-09 36.6 10.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304315005|ref|YP_003850152.1| - 2.2e-15 55.5 17.3 3.8e-08 32.5 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315005|ref|YP_003850152.1| - 1.1e-14 53.5 14.3 5e-08 32.4 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304315005|ref|YP_003850152.1| - 2.7e-12 46.7 4.8 5.1e-06 26.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.5 gi|304315005|ref|YP_003850152.1| - 1.4e-11 43.7 0.0 1.8e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 NIL domain Fer4_2 PF12797.2 gi|304315005|ref|YP_003850152.1| - 1.4e-11 43.5 13.6 4.3e-06 26.3 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315005|ref|YP_003850152.1| - 3.2e-10 39.7 28.5 3.2e-08 33.2 10.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304315005|ref|YP_003850152.1| - 1.1e-09 37.9 11.1 1.3e-05 24.8 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315005|ref|YP_003850152.1| - 5.8e-09 36.2 6.7 0.00014 22.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315005|ref|YP_003850152.1| - 2.7e-08 33.6 6.0 0.00036 20.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315005|ref|YP_003850152.1| - 5.9e-07 30.1 12.1 0.0047 17.6 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|304315005|ref|YP_003850152.1| - 4e-06 26.7 17.9 0.0025 18.0 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|304315005|ref|YP_003850152.1| - 1.4e-05 25.4 11.3 0.0028 18.0 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304315005|ref|YP_003850152.1| - 1.7e-05 25.0 8.0 0.027 14.7 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315005|ref|YP_003850152.1| - 5.2e-05 23.5 18.7 0.011 16.2 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304315005|ref|YP_003850152.1| - 0.00045 20.7 13.4 0.039 14.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304315005|ref|YP_003850152.1| - 0.00079 19.2 7.5 0.0012 18.7 5.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF39 PF01837.11 gi|304315006|ref|YP_003850153.1| - 5.9e-154 511.7 0.2 7.4e-154 511.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|304315006|ref|YP_003850153.1| - 2.8e-30 103.8 5.9 6.4e-15 54.6 0.5 2.5 2 0 0 2 2 2 2 CBS domain PmbA_TldD PF01523.11 gi|304315007|ref|YP_003850154.1| - 1.1e-73 248.0 2.1 1.4e-73 247.7 1.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AMMECR1 PF01871.12 gi|304315008|ref|YP_003850155.1| - 2.4e-63 212.3 0.0 2.8e-63 212.1 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NOG1 PF06858.9 gi|304315009|ref|YP_003850156.1| - 2.8e-23 81.5 0.1 4.6e-23 80.8 0.1 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|304315009|ref|YP_003850156.1| - 1.8e-20 73.0 0.0 3.4e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|304315009|ref|YP_003850156.1| - 1.1e-14 54.0 0.1 1.6e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|304315009|ref|YP_003850156.1| - 7.2e-07 28.7 0.1 2.2e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|304315009|ref|YP_003850156.1| - 2.6e-06 27.8 0.0 6.4e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|304315009|ref|YP_003850156.1| - 1.4e-05 24.6 0.1 0.0011 18.3 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|304315009|ref|YP_003850156.1| - 2.5e-05 23.4 0.0 3.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|304315009|ref|YP_003850156.1| - 0.00069 19.4 0.2 0.14 11.9 0.1 2.4 1 1 1 2 2 2 1 Dynamin family DUF258 PF03193.11 gi|304315009|ref|YP_003850156.1| - 0.0033 16.6 0.0 0.037 13.2 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Arf PF00025.16 gi|304315009|ref|YP_003850156.1| - 0.007 15.6 0.8 0.12 11.5 0.2 2.9 2 1 0 2 2 2 1 ADP-ribosylation factor family cobW PF02492.14 gi|304315009|ref|YP_003850156.1| - 0.023 14.1 0.1 3.5 7.0 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|304315009|ref|YP_003850156.1| - 0.038 12.7 0.0 0.97 8.1 0.0 2.6 2 1 0 2 2 2 0 ArgK protein ATP_bind_1 PF03029.12 gi|304315009|ref|YP_003850156.1| - 0.041 13.4 0.0 0.48 9.9 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|304315009|ref|YP_003850156.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain HSP20 PF00011.16 gi|304315010|ref|YP_003850157.1| - 2e-18 66.0 5.8 2e-18 66.0 4.0 1.4 2 0 0 2 2 2 1 Hsp20/alpha crystallin family CS PF04969.11 gi|304315010|ref|YP_003850157.1| - 3.4e-07 30.6 2.5 6.4e-07 29.8 1.7 1.5 1 0 0 1 1 1 1 CS domain Enterotoxin_b PF01376.13 gi|304315010|ref|YP_003850157.1| - 0.071 12.9 0.7 0.12 12.3 0.5 1.4 1 0 0 1 1 1 0 Heat-labile enterotoxin beta chain Streptin-Immun PF11083.3 gi|304315010|ref|YP_003850157.1| - 2.3 8.2 9.1 0.57 10.2 1.2 2.4 2 1 0 2 2 2 0 Lantibiotic streptin immunity protein MinE PF03776.9 gi|304315010|ref|YP_003850157.1| - 2.4 7.7 5.8 1.8 8.0 2.1 2.2 1 1 1 2 2 2 0 Septum formation topological specificity factor MinE SIS PF01380.17 gi|304315011|ref|YP_003850158.1| - 1.6e-26 92.4 0.1 1.4e-19 69.9 0.1 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|304315011|ref|YP_003850158.1| - 2.1e-05 24.2 0.1 0.00078 19.1 0.0 2.6 2 1 1 3 3 3 1 SIS domain bact-PGI_C PF10432.4 gi|304315011|ref|YP_003850158.1| - 0.035 13.7 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal region DGC PF08859.6 gi|304315011|ref|YP_003850158.1| - 0.086 12.6 0.0 0.22 11.3 0.0 1.6 2 0 0 2 2 2 0 DGC domain Aldolase_2 PF10120.4 gi|304315012|ref|YP_003850159.1| - 2.2e-62 209.4 0.0 2.5e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase DUF2124 PF09897.4 gi|304315013|ref|YP_003850160.1| - 2.7e-46 156.9 0.0 3.3e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DUF447 PF04289.7 gi|304315014|ref|YP_003850161.1| - 6.5e-43 146.3 0.0 7.6e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF4399 PF14347.1 gi|304315014|ref|YP_003850161.1| - 0.022 14.7 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4399) Adenine_deam_C PF13382.1 gi|304315015|ref|YP_003850162.1| - 3.7e-60 201.9 0.0 6.8e-60 201.1 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|304315015|ref|YP_003850162.1| - 8.4e-42 143.9 0.1 3e-39 135.6 0.1 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|304315015|ref|YP_003850162.1| - 8.3e-15 55.5 5.2 1.3e-09 38.4 0.4 2.5 2 1 1 3 3 3 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|304315015|ref|YP_003850162.1| - 3.7e-06 26.6 1.9 7.1e-06 25.7 0.1 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304315015|ref|YP_003850162.1| - 0.00083 18.6 1.6 0.65 9.1 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Saccharop_dh_N PF04455.7 gi|304315016|ref|YP_003850163.1| - 4.4e-40 135.9 0.1 1.2e-39 134.5 0.0 1.8 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|304315016|ref|YP_003850163.1| - 0.0067 16.1 0.1 0.018 14.8 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Amidohydro_1 PF01979.15 gi|304315016|ref|YP_003850163.1| - 0.0088 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family DS PF01916.12 gi|304315016|ref|YP_003850163.1| - 0.06 12.4 0.1 0.48 9.5 0.0 2.2 2 0 0 2 2 2 0 Deoxyhypusine synthase Arginase PF00491.16 gi|304315017|ref|YP_003850164.1| - 1.4e-64 218.0 0.2 1.7e-64 217.8 0.1 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.2 gi|304315017|ref|YP_003850164.1| - 0.0078 16.4 0.1 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 UPF0489 domain TPP_enzyme_N PF02776.13 gi|304315017|ref|YP_003850164.1| - 0.098 12.1 0.2 1 8.8 0.0 2.4 1 1 1 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain eIF-5a PF01287.15 gi|304315018|ref|YP_003850165.1| - 5e-14 51.9 0.3 7.9e-14 51.3 0.2 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|304315018|ref|YP_003850165.1| - 0.045 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain PvlArgDC PF01862.11 gi|304315019|ref|YP_003850166.1| - 3.7e-38 130.7 0.1 4e-38 130.6 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Inositol_P PF00459.20 gi|304315020|ref|YP_003850167.1| - 8.9e-36 123.5 0.0 1e-35 123.3 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|304315020|ref|YP_003850167.1| - 1.9e-06 26.9 0.1 3e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase NAD_kinase PF01513.16 gi|304315021|ref|YP_003850168.1| - 4.8e-70 235.5 0.7 5.9e-70 235.2 0.5 1.1 1 0 0 1 1 1 1 ATP-NAD kinase PK_C PF02887.11 gi|304315021|ref|YP_003850168.1| - 0.085 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain Mur_ligase_M PF08245.7 gi|304315022|ref|YP_003850169.1| - 2.2e-07 31.1 0.0 3.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Porphobil_deam PF01379.15 gi|304315023|ref|YP_003850170.1| - 1.1e-66 223.7 0.0 1.7e-66 223.1 0.0 1.3 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|304315023|ref|YP_003850170.1| - 5.8e-19 67.9 0.5 1.3e-18 66.8 0.3 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Cm_res_leader PF08077.6 gi|304315023|ref|YP_003850170.1| - 0.034 13.8 0.1 0.082 12.6 0.1 1.6 1 0 0 1 1 1 0 Chloramphenicol resistance gene leader peptide Peptidase_S3 PF00944.14 gi|304315023|ref|YP_003850170.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Alphavirus core protein GFO_IDH_MocA PF01408.17 gi|304315024|ref|YP_003850171.1| - 8.9e-31 106.9 0.2 1.7e-30 105.9 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|304315024|ref|YP_003850171.1| - 2e-16 59.7 0.3 3.8e-16 58.8 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|304315024|ref|YP_003850171.1| - 0.00021 21.1 0.2 0.00038 20.3 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|304315024|ref|YP_003850171.1| - 0.004 17.5 0.0 0.0083 16.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|304315024|ref|YP_003850171.1| - 0.021 13.9 0.1 0.033 13.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF3865 PF12981.2 gi|304315024|ref|YP_003850171.1| - 0.043 13.5 0.1 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3865) NAD_binding_3 PF03447.11 gi|304315024|ref|YP_003850171.1| - 0.11 12.8 0.1 0.21 11.9 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Pribosyltran PF00156.22 gi|304315025|ref|YP_003850172.1| - 4.3e-21 74.9 1.2 7.1e-21 74.2 0.7 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|304315025|ref|YP_003850172.1| - 0.00052 19.2 0.0 0.00079 18.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|304315025|ref|YP_003850172.1| - 0.0023 17.2 0.2 0.0044 16.3 0.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_23 PF13384.1 gi|304315025|ref|YP_003850172.1| - 0.0026 17.3 0.0 0.0075 15.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|304315025|ref|YP_003850172.1| - 0.0031 17.1 0.2 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.10 gi|304315025|ref|YP_003850172.1| - 0.05 13.4 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Pribosyl_synth PF14572.1 gi|304315025|ref|YP_003850172.1| - 0.058 13.1 0.1 0.086 12.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Terminase_5 PF06056.7 gi|304315025|ref|YP_003850172.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.1 gi|304315025|ref|YP_003850172.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UbiA PF01040.13 gi|304315026|ref|YP_003850173.1| - 3.3e-19 69.1 15.0 4.1e-19 68.7 10.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Colicin_V PF02674.11 gi|304315026|ref|YP_003850173.1| - 2.2 8.1 11.9 0.2 11.4 2.7 2.5 2 0 0 2 2 2 0 Colicin V production protein eRF1_2 PF03464.10 gi|304315027|ref|YP_003850174.1| - 9.4e-44 148.9 0.7 1.5e-43 148.2 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|304315027|ref|YP_003850174.1| - 2.1e-36 124.6 0.1 5.1e-36 123.3 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|304315027|ref|YP_003850174.1| - 3.6e-26 91.2 0.0 6.6e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 zf-TFIIB PF13453.1 gi|304315027|ref|YP_003850174.1| - 0.0055 15.8 1.0 0.32 10.2 0.0 2.5 2 0 0 2 2 2 1 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|304315027|ref|YP_003850174.1| - 0.016 15.1 1.5 0.016 15.1 1.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|304315027|ref|YP_003850174.1| - 0.027 14.2 0.1 1.7 8.5 0.0 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RNHCP PF12647.2 gi|304315027|ref|YP_003850174.1| - 0.034 13.9 0.1 0.059 13.2 0.1 1.4 1 0 0 1 1 1 0 RNHCP domain zf-IS66 PF13005.2 gi|304315027|ref|YP_003850174.1| - 0.29 11.1 3.8 3.2 7.7 0.1 3.3 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AA_kinase PF00696.23 gi|304315028|ref|YP_003850175.1| - 2.1e-29 102.7 0.0 3.1e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family DUF2116 PF09889.4 gi|304315029|ref|YP_003850176.1| - 7.2e-28 96.1 1.4 7.8e-28 96.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.4 gi|304315029|ref|YP_003850176.1| - 0.0029 17.2 4.6 0.0081 15.8 3.2 1.9 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 PBP1_TM PF14812.1 gi|304315029|ref|YP_003850176.1| - 0.0048 17.1 0.0 0.0054 17.0 0.0 1.1 1 0 0 1 1 1 1 Transmembrane domain of transglycosylase PBP1 at N-terminal DUF329 PF03884.9 gi|304315029|ref|YP_003850176.1| - 0.0096 15.4 2.3 0.017 14.6 1.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF329) DUF2256 PF10013.4 gi|304315029|ref|YP_003850176.1| - 0.036 13.8 4.5 1 9.1 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Ecl1 PF12855.2 gi|304315029|ref|YP_003850176.1| - 0.052 12.8 0.3 0.068 12.4 0.2 1.2 1 0 0 1 1 1 0 Life-span regulatory factor Rad50_zn_hook PF04423.9 gi|304315029|ref|YP_003850176.1| - 0.053 13.0 4.1 0.24 10.8 2.8 1.8 1 1 0 1 1 1 0 Rad50 zinc hook motif Sec20 PF03908.8 gi|304315029|ref|YP_003850176.1| - 0.059 13.0 0.3 0.065 12.9 0.2 1.1 1 0 0 1 1 1 0 Sec20 zf-FPG_IleRS PF06827.9 gi|304315029|ref|YP_003850176.1| - 0.11 12.1 3.3 0.17 11.5 2.3 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|304315029|ref|YP_003850176.1| - 0.14 12.0 1.2 0.19 11.5 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF3357 PF11837.3 gi|304315029|ref|YP_003850176.1| - 0.15 11.9 0.0 0.15 11.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) UL2 PF08196.6 gi|304315029|ref|YP_003850176.1| - 0.27 10.9 1.7 0.36 10.5 1.2 1.2 1 0 0 1 1 1 0 UL2 protein zf-HIT PF04438.11 gi|304315029|ref|YP_003850176.1| - 0.28 10.8 1.7 0.38 10.4 1.2 1.2 1 0 0 1 1 1 0 HIT zinc finger DUF308 PF03729.8 gi|304315030|ref|YP_003850177.1| - 1.8e-07 31.0 48.6 2.8e-07 30.4 14.0 3.2 2 1 1 3 3 3 2 Short repeat of unknown function (DUF308) DUF1461 PF07314.6 gi|304315030|ref|YP_003850177.1| - 6.2 6.5 10.6 0.16 11.6 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1461) TauE PF01925.14 gi|304315031|ref|YP_003850178.1| - 4.1e-46 157.3 44.4 4.7e-46 157.1 30.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Glyco_trans_1_3 PF13528.1 gi|304315033|ref|YP_003850180.1| - 9.6e-91 304.2 0.0 1.4e-90 303.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glycos_transf_2 PF00535.21 gi|304315033|ref|YP_003850180.1| - 1.2e-30 106.3 0.1 1.3e-29 103.0 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304315033|ref|YP_003850180.1| - 2.1e-14 53.9 0.0 3.9e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|304315033|ref|YP_003850180.1| - 1.2e-13 50.7 0.0 5.6e-13 48.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tran_28_C PF04101.11 gi|304315033|ref|YP_003850180.1| - 1.8e-06 27.6 0.0 3.8e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_21 PF13506.1 gi|304315033|ref|YP_003850180.1| - 0.00014 21.1 0.0 0.0003 20.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|304315033|ref|YP_003850180.1| - 0.0004 20.6 0.3 0.0016 18.7 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|304315033|ref|YP_003850180.1| - 0.0026 17.4 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|304315033|ref|YP_003850180.1| - 0.016 14.4 0.0 0.26 10.4 0.0 2.3 1 1 0 1 1 1 0 Glycosyltransferase like family TFIIB PF00382.14 gi|304315034|ref|YP_003850181.1| - 5.4e-44 147.8 1.1 1.2e-22 79.4 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|304315034|ref|YP_003850181.1| - 4.9e-18 64.1 2.1 1.2e-17 62.9 1.1 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|304315034|ref|YP_003850181.1| - 0.00097 18.4 0.1 0.15 11.3 0.0 2.9 2 0 0 2 2 2 1 Sigma-70, region 4 Lar_restr_allev PF14354.1 gi|304315034|ref|YP_003850181.1| - 0.0059 16.8 0.8 0.11 12.7 0.2 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar Cyclin_N PF00134.18 gi|304315034|ref|YP_003850181.1| - 0.0064 16.0 0.0 0.79 9.2 0.0 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain zf-ribbon_3 PF13248.1 gi|304315034|ref|YP_003850181.1| - 0.01 15.0 0.5 0.01 15.0 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|304315034|ref|YP_003850181.1| - 0.015 14.9 0.4 0.038 13.6 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|304315034|ref|YP_003850181.1| - 0.027 14.4 0.7 0.027 14.4 0.5 2.7 2 1 1 3 3 3 0 Zinc ribbon domain Cyclin_C PF02984.14 gi|304315034|ref|YP_003850181.1| - 0.028 14.3 0.0 0.43 10.5 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain LacI PF00356.16 gi|304315034|ref|YP_003850181.1| - 0.031 13.8 0.8 6.4 6.4 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_AsnC-type PF13404.1 gi|304315034|ref|YP_003850181.1| - 0.045 13.2 0.1 0.55 9.8 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|304315034|ref|YP_003850181.1| - 0.06 12.8 0.2 0.98 8.9 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Elf1 PF05129.8 gi|304315034|ref|YP_003850181.1| - 0.062 12.9 0.6 0.25 11.0 0.1 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like UPF0181 PF03701.9 gi|304315034|ref|YP_003850181.1| - 0.077 12.3 0.1 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Ribosomal_S27e PF01667.12 gi|304315034|ref|YP_003850181.1| - 0.084 12.4 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_Tnp_ISL3 PF13542.1 gi|304315034|ref|YP_003850181.1| - 0.088 12.0 0.1 2.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 RPA_interact_C PF14768.1 gi|304315034|ref|YP_003850181.1| - 0.093 13.1 0.2 4.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_24 PF13412.1 gi|304315034|ref|YP_003850181.1| - 0.11 11.8 0.1 0.99 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HypA PF01155.14 gi|304315034|ref|YP_003850181.1| - 0.4 10.3 2.1 3.2 7.4 0.3 2.5 3 0 0 3 3 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|304315034|ref|YP_003850181.1| - 1.2 9.0 3.9 4.1 7.3 1.5 2.2 2 1 0 2 2 2 0 Double zinc ribbon Gar1 PF04410.9 gi|304315035|ref|YP_003850182.1| - 5.6e-14 51.8 0.0 6.1e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|304315035|ref|YP_003850182.1| - 0.014 15.2 0.0 0.041 13.7 0.0 2.0 2 1 0 2 2 2 0 PRC-barrel domain GCV_T_C PF08669.6 gi|304315035|ref|YP_003850182.1| - 0.027 14.5 0.0 0.031 14.3 0.0 1.1 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain UPF0104 PF03706.8 gi|304315036|ref|YP_003850183.1| - 2.9e-47 161.3 33.4 3.7e-47 161.0 23.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF1082 PF06449.6 gi|304315036|ref|YP_003850183.1| - 0.16 11.8 0.4 0.64 9.9 0.1 2.0 2 0 0 2 2 2 0 Mitochondrial domain of unknown function (DUF1082) Methyltransf_6 PF03737.10 gi|304315037|ref|YP_003850184.1| - 1.5e-41 141.8 0.4 1.8e-41 141.5 0.3 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase DUF211 PF02680.9 gi|304315038|ref|YP_003850185.1| - 7.9e-41 137.7 1.1 8.5e-41 137.6 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF2765 PF10963.3 gi|304315038|ref|YP_003850185.1| - 0.045 13.7 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2765) MacB_PCD PF12704.2 gi|304315038|ref|YP_003850185.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain Cache_1 PF02743.13 gi|304315038|ref|YP_003850185.1| - 0.11 12.0 0.1 0.24 10.9 0.1 1.5 1 1 0 1 1 1 0 Cache domain Toprim PF01751.17 gi|304315039|ref|YP_003850186.1| - 1.7e-06 27.9 0.0 2.8e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|304315039|ref|YP_003850186.1| - 8e-05 22.5 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|304315040|ref|YP_003850187.1| - 1.4e-07 31.4 0.2 4.6e-07 29.7 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|304315040|ref|YP_003850187.1| - 0.0006 19.7 0.1 0.0041 17.0 0.1 2.5 1 1 0 1 1 1 1 Toprim domain Bac_DnaA_C PF08299.6 gi|304315040|ref|YP_003850187.1| - 0.013 15.3 0.2 0.035 13.9 0.2 1.7 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix Toprim_2 PF13155.1 gi|304315040|ref|YP_003850187.1| - 0.038 14.2 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 Toprim-like Mg_chelatase PF01078.16 gi|304315041|ref|YP_003850188.1| - 9.6e-14 51.0 0.1 3.7e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_32 PF13654.1 gi|304315041|ref|YP_003850188.1| - 8.7e-11 41.1 0.0 5.1e-07 28.7 0.1 3.1 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|304315041|ref|YP_003850188.1| - 9e-10 38.2 0.0 0.00031 20.2 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|304315041|ref|YP_003850188.1| - 1.1e-07 31.1 0.1 0.0031 16.6 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|304315041|ref|YP_003850188.1| - 6.1e-07 29.2 0.0 0.00029 20.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|304315041|ref|YP_003850188.1| - 2e-06 28.0 0.0 0.0021 18.2 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|304315041|ref|YP_003850188.1| - 5.4e-06 25.4 0.1 1.4 7.5 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_22 PF13401.1 gi|304315041|ref|YP_003850188.1| - 2.2e-05 24.5 0.0 0.005 16.9 0.0 3.1 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|304315041|ref|YP_003850188.1| - 2.5e-05 24.3 0.0 8.5e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|304315041|ref|YP_003850188.1| - 2.6e-05 25.0 0.0 0.021 15.6 0.0 3.2 2 2 1 3 3 3 1 AAA domain DUF2072 PF09845.4 gi|304315041|ref|YP_003850188.1| - 0.0018 18.2 0.1 0.0045 16.9 0.0 1.8 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) IstB_IS21 PF01695.12 gi|304315041|ref|YP_003850188.1| - 0.0019 17.6 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|304315041|ref|YP_003850188.1| - 0.004 17.4 0.0 0.01 16.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_14 PF13173.1 gi|304315041|ref|YP_003850188.1| - 0.0081 16.0 0.0 3.9 7.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|304315041|ref|YP_003850188.1| - 0.011 14.4 0.2 0.74 8.4 0.0 2.6 3 0 0 3 3 3 0 TIP49 C-terminus DZR PF12773.2 gi|304315041|ref|YP_003850188.1| - 0.018 14.8 0.4 0.031 14.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA_19 PF13245.1 gi|304315041|ref|YP_003850188.1| - 0.023 14.4 0.1 0.078 12.7 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|304315041|ref|YP_003850188.1| - 0.026 13.9 0.0 0.091 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|304315041|ref|YP_003850188.1| - 0.036 14.3 0.0 0.094 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|304315041|ref|YP_003850188.1| - 0.037 14.0 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SE PF00437.15 gi|304315041|ref|YP_003850188.1| - 0.041 12.7 0.0 0.1 11.4 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF1272 PF06906.6 gi|304315041|ref|YP_003850188.1| - 0.068 13.0 0.3 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) NACHT PF05729.7 gi|304315041|ref|YP_003850188.1| - 0.072 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|304315041|ref|YP_003850188.1| - 0.13 12.1 0.0 0.61 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zn_Tnp_IS1595 PF12760.2 gi|304315041|ref|YP_003850188.1| - 0.15 11.8 4.1 1.2 8.9 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain SMC_N PF02463.14 gi|304315041|ref|YP_003850188.1| - 0.16 11.1 0.0 0.49 9.5 0.0 1.7 2 0 0 2 2 1 0 RecF/RecN/SMC N terminal domain zinc_ribbon_2 PF13240.1 gi|304315041|ref|YP_003850188.1| - 1.7 8.2 5.0 3.4 7.2 3.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|304315041|ref|YP_003850188.1| - 3.2 7.0 4.8 5.7 6.2 3.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Phage_integrase PF00589.17 gi|304315042|ref|YP_003850189.1| - 8e-48 162.3 0.2 1.3e-47 161.6 0.1 1.4 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|304315042|ref|YP_003850189.1| - 1.2e-07 31.9 2.8 2.3e-07 31.0 0.4 2.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|304315042|ref|YP_003850189.1| - 4.1e-07 30.0 1.0 2.3e-06 27.6 0.3 2.4 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|304315042|ref|YP_003850189.1| - 0.00099 18.9 0.2 0.0019 17.9 0.0 1.6 2 0 0 2 2 2 1 Integrase DUF3435 PF11917.3 gi|304315042|ref|YP_003850189.1| - 0.012 14.3 0.0 0.019 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) DUF318 PF03773.8 gi|304315043|ref|YP_003850190.1| - 1.5e-95 319.7 18.0 1.7e-95 319.5 12.4 1.0 1 0 0 1 1 1 1 Predicted permease Thioredoxin_3 PF13192.1 gi|304315044|ref|YP_003850191.1| - 8.3e-25 86.4 0.2 9e-25 86.2 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|304315044|ref|YP_003850191.1| - 0.015 15.4 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD PTS_IIB PF02302.12 gi|304315044|ref|YP_003850191.1| - 0.061 13.8 0.1 0.099 13.1 0.1 1.3 1 1 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit Glutaredoxin PF00462.19 gi|304315044|ref|YP_003850191.1| - 0.07 13.1 0.2 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 Glutaredoxin Prok-RING_1 PF14446.1 gi|304315045|ref|YP_003850192.1| - 0.073 12.8 1.2 0.073 12.8 0.8 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C2HC5 PF06221.8 gi|304315045|ref|YP_003850192.1| - 0.075 12.8 4.6 0.17 11.6 3.2 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF2614 PF11023.3 gi|304315045|ref|YP_003850192.1| - 0.14 11.9 0.4 0.15 11.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) OrfB_Zn_ribbon PF07282.6 gi|304315045|ref|YP_003850192.1| - 0.16 11.6 3.1 0.24 11.0 2.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Sgf11 PF08209.6 gi|304315045|ref|YP_003850192.1| - 0.17 11.2 2.6 7.6 5.9 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|304315045|ref|YP_003850192.1| - 0.18 11.4 3.3 0.24 11.0 2.3 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|304315045|ref|YP_003850192.1| - 0.4 10.5 4.9 4 7.3 3.4 2.0 1 1 0 1 1 1 0 IBR domain FdhE PF04216.7 gi|304315045|ref|YP_003850192.1| - 0.42 10.2 3.7 0.46 10.1 2.5 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.2 gi|304315045|ref|YP_003850192.1| - 0.49 10.2 5.1 0.85 9.4 3.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF1289 PF06945.8 gi|304315045|ref|YP_003850192.1| - 6.4 6.3 8.1 4.3 6.8 3.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1289) F420_oxidored PF03807.12 gi|304315046|ref|YP_003850193.1| - 1.1e-12 48.1 0.0 2.3e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.1 gi|304315046|ref|YP_003850193.1| - 8.4e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation Peptidase_S3 PF00944.14 gi|304315046|ref|YP_003850193.1| - 0.03 13.7 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 Alphavirus core protein DUF2520 PF10728.4 gi|304315046|ref|YP_003850193.1| - 0.067 12.6 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) Usp PF00582.21 gi|304315047|ref|YP_003850194.1| - 1.4e-38 132.2 3.4 1.6e-38 132.0 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family IF3_N PF05198.11 gi|304315047|ref|YP_003850194.1| - 0.0054 16.6 0.1 4.1 7.3 0.0 2.3 2 0 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Nitro_FeMo-Co PF02579.12 gi|304315047|ref|YP_003850194.1| - 0.036 14.1 0.1 0.085 12.9 0.0 1.7 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor HTH_5 PF01022.15 gi|304315048|ref|YP_003850195.1| - 3.1e-23 81.1 0.1 5.1e-23 80.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|304315048|ref|YP_003850195.1| - 1.5e-16 59.9 0.1 2.2e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|304315048|ref|YP_003850195.1| - 0.00031 20.3 0.0 0.00064 19.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3734 PF12536.3 gi|304315048|ref|YP_003850195.1| - 0.0058 16.7 0.1 0.0085 16.2 0.0 1.2 1 0 0 1 1 1 1 Patatin phospholipase HTH_34 PF13601.1 gi|304315048|ref|YP_003850195.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|304315048|ref|YP_003850195.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.7 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|304315048|ref|YP_003850195.1| - 0.022 14.1 0.0 0.091 12.1 0.0 2.0 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|304315048|ref|YP_003850195.1| - 0.023 14.3 0.0 0.051 13.2 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain Penicillinase_R PF03965.11 gi|304315048|ref|YP_003850195.1| - 0.051 13.6 0.0 0.37 10.8 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor DUF742 PF05331.6 gi|304315048|ref|YP_003850195.1| - 0.09 12.3 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DUF2250 PF10007.4 gi|304315048|ref|YP_003850195.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HisKA_2 PF07568.7 gi|304315049|ref|YP_003850196.1| - 1.2e-23 82.7 0.1 2.6e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.19 gi|304315049|ref|YP_003850196.1| - 1.4e-20 73.3 0.4 2.9e-20 72.3 0.3 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|304315049|ref|YP_003850196.1| - 1.1e-11 44.4 0.0 2.3e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|304315049|ref|YP_003850196.1| - 0.00088 19.6 0.0 0.0024 18.2 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|304315049|ref|YP_003850196.1| - 0.0054 16.5 0.0 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF2993 PF11209.3 gi|304315049|ref|YP_003850196.1| - 0.13 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2993) HisKA_2 PF07568.7 gi|304315050|ref|YP_003850197.1| - 1.7e-27 95.0 1.5 3.5e-27 94.0 0.3 2.1 2 0 0 2 2 2 1 Histidine kinase Response_reg PF00072.19 gi|304315050|ref|YP_003850197.1| - 4.6e-15 55.5 0.0 8.4e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|304315050|ref|YP_003850197.1| - 3.5e-14 52.6 0.0 8.9e-14 51.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|304315050|ref|YP_003850197.1| - 6.4e-12 45.1 0.1 1.3e-11 44.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|304315050|ref|YP_003850197.1| - 1.2e-08 35.2 0.0 5.9e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|304315050|ref|YP_003850197.1| - 4.1e-08 33.0 0.0 8.1e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|304315050|ref|YP_003850197.1| - 7.1e-06 26.3 0.0 1.9e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_3 PF13589.1 gi|304315050|ref|YP_003850197.1| - 0.0084 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B12-binding PF02310.14 gi|304315050|ref|YP_003850197.1| - 0.044 13.6 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain PAS PF00989.19 gi|304315050|ref|YP_003850197.1| - 0.049 13.4 0.1 0.24 11.1 0.0 2.2 2 0 0 2 2 2 0 PAS fold DUF523 PF04463.7 gi|304315051|ref|YP_003850198.1| - 3.5e-42 143.5 0.0 4.8e-42 143.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|304315051|ref|YP_003850198.1| - 2.1e-32 111.4 0.0 3.4e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) IFT46_B_C PF12317.3 gi|304315051|ref|YP_003850198.1| - 0.02 14.2 0.0 0.25 10.6 0.0 2.1 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal FAD_binding_7 PF03441.9 gi|304315052|ref|YP_003850199.1| - 3.9e-33 114.8 0.7 3.7e-32 111.6 0.4 2.1 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|304315052|ref|YP_003850199.1| - 2.1e-20 73.0 0.0 4.7e-20 71.9 0.0 1.6 1 0 0 1 1 1 1 DNA photolyase AP_endonuc_2 PF01261.19 gi|304315052|ref|YP_003850199.1| - 0.00043 19.6 0.1 0.0011 18.3 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel GGDEF PF00990.16 gi|304315052|ref|YP_003850199.1| - 0.071 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 GGDEF domain BioY PF02632.9 gi|304315053|ref|YP_003850200.1| - 6e-39 133.0 19.6 6e-39 133.0 13.6 1.8 1 1 1 2 2 2 1 BioY family CreD PF06123.7 gi|304315053|ref|YP_003850200.1| - 0.088 11.3 4.5 0.13 10.8 3.1 1.2 1 0 0 1 1 1 0 Inner membrane protein CreD DUF872 PF05915.7 gi|304315053|ref|YP_003850200.1| - 1.9 8.3 4.4 0.54 10.1 0.5 1.9 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF1284 PF06935.6 gi|304315054|ref|YP_003850201.1| - 7.2e-27 93.5 0.0 8.7e-27 93.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Aldo_ket_red PF00248.16 gi|304315055|ref|YP_003850202.1| - 1.2e-35 122.6 0.0 1.5e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|304315055|ref|YP_003850202.1| - 1.6e-05 25.1 9.3 3.9e-05 23.9 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315055|ref|YP_003850202.1| - 0.036 14.0 12.2 0.097 12.7 8.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|304315055|ref|YP_003850202.1| - 0.61 9.7 7.4 5.9 6.5 1.5 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster P12 PF12669.2 gi|304315055|ref|YP_003850202.1| - 0.82 9.9 6.8 2.4 8.4 1.2 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family ECF-ribofla_trS PF07155.7 gi|304315056|ref|YP_003850203.1| - 0.86 9.3 5.9 1.1 8.9 4.1 1.0 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component APH PF01636.18 gi|304315057|ref|YP_003850204.1| - 2e-10 40.8 0.0 0.0001 22.1 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|304315057|ref|YP_003850204.1| - 4.3e-06 26.4 2.6 0.033 13.7 0.0 2.6 1 1 2 3 3 3 2 Choline/ethanolamine kinase RIO1 PF01163.17 gi|304315057|ref|YP_003850204.1| - 4.7e-06 26.0 0.0 2.5e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 RIO1 family EcKinase PF02958.15 gi|304315057|ref|YP_003850204.1| - 1.3e-05 24.5 0.3 3.1e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 Ecdysteroid kinase Fructosamin_kin PF03881.9 gi|304315057|ref|YP_003850204.1| - 0.015 14.3 0.0 0.022 13.7 0.0 1.3 1 0 0 1 1 1 0 Fructosamine kinase DUF2252 PF10009.4 gi|304315057|ref|YP_003850204.1| - 0.048 12.5 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) TFX_C PF14601.1 gi|304315058|ref|YP_003850205.1| - 2e-25 88.4 0.3 2.6e-25 87.9 0.2 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|304315058|ref|YP_003850205.1| - 3.2e-05 23.1 0.4 6.8e-05 22.1 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|304315058|ref|YP_003850205.1| - 0.00035 20.3 0.5 0.0006 19.5 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|304315058|ref|YP_003850205.1| - 0.00043 20.0 0.3 0.00081 19.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|304315058|ref|YP_003850205.1| - 0.00043 20.2 0.4 0.00085 19.3 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|304315058|ref|YP_003850205.1| - 0.0081 15.6 0.4 0.019 14.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|304315058|ref|YP_003850205.1| - 0.011 15.3 2.7 0.012 15.2 0.1 2.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_25 PF13413.1 gi|304315058|ref|YP_003850205.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_11 PF13720.1 gi|304315058|ref|YP_003850205.1| - 0.071 13.3 0.3 0.86 9.8 0.0 2.2 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HTH_7 PF02796.10 gi|304315058|ref|YP_003850205.1| - 0.079 12.8 0.1 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|304315058|ref|YP_003850205.1| - 0.1 12.6 0.1 0.42 10.6 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|304315058|ref|YP_003850205.1| - 0.12 12.0 0.2 0.61 9.7 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_31 PF13560.1 gi|304315058|ref|YP_003850205.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FmdE PF02663.9 gi|304315059|ref|YP_003850206.1| - 9e-26 90.3 0.0 1.1e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Prok-RING_1 PF14446.1 gi|304315059|ref|YP_003850206.1| - 0.17 11.6 0.8 0.38 10.5 0.6 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 GXGXG PF01493.14 gi|304315060|ref|YP_003850207.1| - 1.6e-50 170.9 20.1 2.7e-50 170.2 14.0 1.3 1 0 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.16 gi|304315060|ref|YP_003850207.1| - 9e-14 51.2 0.0 1.6e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|304315061|ref|YP_003850208.1| - 4.7e-18 65.1 0.0 1.7e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|304315061|ref|YP_003850208.1| - 8.5e-05 22.3 0.2 0.024 14.4 0.0 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|304315061|ref|YP_003850208.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ABC_tran PF00005.22 gi|304315062|ref|YP_003850209.1| - 9.8e-31 106.8 0.0 1.9e-30 105.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|304315062|ref|YP_003850209.1| - 3.7e-14 52.5 2.6 6.7e-13 48.5 0.1 3.0 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|304315062|ref|YP_003850209.1| - 3.5e-08 33.7 0.3 0.0035 17.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|304315062|ref|YP_003850209.1| - 0.00016 21.6 0.0 0.00044 20.1 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|304315062|ref|YP_003850209.1| - 0.00036 19.8 0.0 0.65 9.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|304315062|ref|YP_003850209.1| - 0.0033 16.3 0.0 0.0077 15.1 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|304315062|ref|YP_003850209.1| - 0.0056 16.5 0.0 0.04 13.8 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|304315062|ref|YP_003850209.1| - 0.0099 16.2 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|304315062|ref|YP_003850209.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|304315062|ref|YP_003850209.1| - 0.023 14.2 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|304315062|ref|YP_003850209.1| - 0.027 13.9 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|304315062|ref|YP_003850209.1| - 0.028 13.5 0.0 0.071 12.2 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Adeno_IVa2 PF02456.10 gi|304315062|ref|YP_003850209.1| - 0.032 12.8 0.1 0.055 12.1 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_15 PF13175.1 gi|304315062|ref|YP_003850209.1| - 0.042 12.9 0.1 5.2 6.0 0.1 2.2 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|304315062|ref|YP_003850209.1| - 0.077 12.6 0.1 0.19 11.3 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_22 PF13401.1 gi|304315062|ref|YP_003850209.1| - 0.091 12.9 0.1 0.2 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|304315062|ref|YP_003850209.1| - 0.11 11.9 0.1 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|304315063|ref|YP_003850210.1| - 1.5e-14 53.9 13.5 1.5e-14 53.9 9.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF364 PF04016.7 gi|304315064|ref|YP_003850211.1| - 3e-14 52.5 0.0 4.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) PS_pyruv_trans PF04230.8 gi|304315064|ref|YP_003850211.1| - 0.058 13.0 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase SBP_bac_11 PF13531.1 gi|304315065|ref|YP_003850212.1| - 1.4e-47 162.3 0.0 1.5e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|304315065|ref|YP_003850212.1| - 2e-11 43.7 0.0 2.6e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_1 PF01547.20 gi|304315065|ref|YP_003850212.1| - 1.8e-09 37.7 0.9 6.9e-07 29.2 0.6 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.15 gi|304315065|ref|YP_003850212.1| - 1.8e-06 27.3 0.6 2.7e-06 26.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_8 PF13416.1 gi|304315065|ref|YP_003850212.1| - 9.9e-05 22.2 1.9 0.00086 19.1 0.1 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|304315065|ref|YP_003850212.1| - 0.00012 21.5 1.8 0.00029 20.2 1.2 1.6 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.6 gi|304315065|ref|YP_003850212.1| - 0.00013 21.6 1.7 0.00018 21.2 1.2 1.2 1 0 0 1 1 1 1 NMT1/THI5 like PBP_like PF12727.2 gi|304315065|ref|YP_003850212.1| - 0.00014 20.8 0.3 0.00028 19.8 0.2 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.2 gi|304315065|ref|YP_003850212.1| - 0.058 12.8 0.0 0.09 12.2 0.0 1.4 1 1 0 1 1 1 0 PBP superfamily domain UL73_N PF12522.3 gi|304315065|ref|YP_003850212.1| - 0.14 11.7 0.3 0.33 10.5 0.2 1.6 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal DUF364 PF04016.7 gi|304315066|ref|YP_003850213.1| - 3.1e-40 136.8 0.0 4e-40 136.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|304315066|ref|YP_003850213.1| - 2.9e-15 56.1 0.0 9.1e-15 54.5 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4213) Fer4 PF00037.22 gi|304315067|ref|YP_003850214.1| - 7.7e-54 177.2 82.4 6.5e-09 35.0 1.5 8.5 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315067|ref|YP_003850214.1| - 1.5e-37 127.7 109.3 8.9e-11 42.0 5.9 5.5 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315067|ref|YP_003850214.1| - 7.2e-31 104.7 84.2 3.6e-06 26.6 1.0 8.5 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304315067|ref|YP_003850214.1| - 1e-29 102.5 66.8 7.8e-09 35.6 4.0 6.4 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304315067|ref|YP_003850214.1| - 6.9e-29 99.4 62.4 3.2e-08 33.2 7.7 6.8 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304315067|ref|YP_003850214.1| - 1.1e-26 92.3 73.3 2.8e-08 33.4 6.6 6.3 4 4 3 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315067|ref|YP_003850214.1| - 3.1e-25 88.7 61.5 1.1e-07 32.5 5.7 7.0 4 3 3 7 7 7 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|304315067|ref|YP_003850214.1| - 1.9e-23 82.2 63.6 1.2e-07 31.6 2.6 6.0 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315067|ref|YP_003850214.1| - 1.4e-21 75.0 82.3 0.00012 21.7 1.3 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304315067|ref|YP_003850214.1| - 3e-14 52.0 83.3 0.0049 17.0 1.8 8.8 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304315067|ref|YP_003850214.1| - 6.7e-14 51.9 64.6 1.3e-05 25.4 1.8 7.3 2 1 5 8 8 8 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315067|ref|YP_003850214.1| - 4.1e-11 43.1 64.7 0.033 14.6 0.3 8.4 7 1 0 8 8 8 7 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315067|ref|YP_003850214.1| - 1.2e-09 37.9 108.4 0.005 17.3 3.6 8.5 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_15 PF13459.1 gi|304315067|ref|YP_003850214.1| - 5e-07 30.1 73.6 0.12 12.9 0.2 8.4 6 3 0 6 6 5 5 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304315067|ref|YP_003850214.1| - 2.3e-05 24.2 38.7 0.075 12.9 9.7 4.7 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304315067|ref|YP_003850214.1| - 5.2e-05 23.5 75.3 0.42 11.0 1.7 8.4 7 1 0 7 7 7 6 4Fe-4S single cluster domain CitX PF03802.9 gi|304315067|ref|YP_003850214.1| - 6.7 6.1 13.9 3.1 7.1 1.2 3.6 2 1 1 3 3 3 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SnAPC_2_like PF11035.3 gi|304315068|ref|YP_003850215.1| - 0.41 10.0 5.0 0.51 9.7 3.5 1.1 1 0 0 1 1 1 0 Small nuclear RNA activating complex subunit 2-like Exo_endo_phos PF03372.18 gi|304315069|ref|YP_003850216.1| - 1.3e-07 31.7 0.0 1.8e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|304315069|ref|YP_003850216.1| - 1.4e-07 31.1 0.0 2.9e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase DUF1355 PF07090.6 gi|304315069|ref|YP_003850216.1| - 0.094 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) DUF4491 PF14898.1 gi|304315070|ref|YP_003850217.1| - 1.9 8.7 8.6 1.3 9.2 1.5 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF4491) MarR PF01047.17 gi|304315071|ref|YP_003850218.1| - 4.8e-07 29.3 0.0 8.2e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|304315071|ref|YP_003850218.1| - 9.4e-07 28.4 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|304315071|ref|YP_003850218.1| - 0.00033 20.3 0.0 0.00064 19.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|304315071|ref|YP_003850218.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.1 gi|304315071|ref|YP_003850218.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Nitroreductase PF00881.19 gi|304315073|ref|YP_003850220.1| - 6.8e-10 39.0 0.1 0.0049 16.6 0.2 3.5 3 1 0 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.1 gi|304315073|ref|YP_003850220.1| - 1.2e-06 27.8 0.0 5.6e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 Putative TM nitroreductase CMD PF02627.15 gi|304315075|ref|YP_003850222.1| - 1.8e-18 66.1 3.6 2e-18 66.0 2.5 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF99 PF01949.11 gi|304315075|ref|YP_003850222.1| - 0.055 12.5 0.1 0.06 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF99 DUF1780 PF08682.5 gi|304315075|ref|YP_003850222.1| - 0.13 11.7 0.1 0.15 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1780) Fe_dep_repress PF01325.14 gi|304315076|ref|YP_003850223.1| - 5e-26 90.4 0.3 8.2e-26 89.7 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|304315076|ref|YP_003850223.1| - 9.4e-20 70.0 0.2 1.6e-19 69.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|304315076|ref|YP_003850223.1| - 6.5e-08 32.1 0.1 1.2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|304315076|ref|YP_003850223.1| - 4.9e-06 26.1 0.0 9e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|304315076|ref|YP_003850223.1| - 0.00033 20.9 0.0 0.00059 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|304315076|ref|YP_003850223.1| - 0.0013 18.8 0.1 0.0019 18.2 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|304315076|ref|YP_003850223.1| - 0.0016 18.0 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|304315076|ref|YP_003850223.1| - 0.003 17.2 0.2 0.0072 15.9 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|304315076|ref|YP_003850223.1| - 0.0043 16.5 0.0 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit FeoC PF09012.5 gi|304315076|ref|YP_003850223.1| - 0.009 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|304315076|ref|YP_003850223.1| - 0.01 15.1 0.6 0.022 14.1 0.0 1.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.10 gi|304315076|ref|YP_003850223.1| - 0.019 14.3 0.0 0.068 12.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rio2_N PF09202.6 gi|304315076|ref|YP_003850223.1| - 0.028 14.4 0.0 0.066 13.2 0.0 1.6 1 1 0 1 1 1 0 Rio2, N-terminal HTH_45 PF14947.1 gi|304315076|ref|YP_003850223.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix MOZART2 PF12926.2 gi|304315076|ref|YP_003850223.1| - 0.074 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated FliP PF00813.15 gi|304315076|ref|YP_003850223.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 FliP family DUF498 PF04430.9 gi|304315078|ref|YP_003850225.1| - 8.6e-12 44.5 0.1 2.2e-10 40.0 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) GlnE PF03710.10 gi|304315078|ref|YP_003850225.1| - 0.012 14.9 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase DUF45 PF01863.12 gi|304315079|ref|YP_003850226.1| - 9.8e-44 149.5 0.1 1.1e-39 136.3 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.5 gi|304315079|ref|YP_003850226.1| - 5.5e-06 26.3 0.1 8.7e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|304315079|ref|YP_003850226.1| - 0.0021 17.7 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF2342 PF10103.4 gi|304315079|ref|YP_003850226.1| - 0.0072 15.3 0.0 0.77 8.6 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised conserved protein (DUF2342) DOG1 PF14144.1 gi|304315079|ref|YP_003850226.1| - 0.11 12.5 0.1 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Seed dormancy control HSDR_N PF04313.9 gi|304315080|ref|YP_003850227.1| - 1.4e-36 126.0 0.2 9.5e-36 123.3 0.0 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|304315080|ref|YP_003850227.1| - 3.9e-21 75.7 0.1 9.8e-21 74.4 0.1 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.3 gi|304315080|ref|YP_003850227.1| - 1.4e-10 40.7 4.1 5.7e-10 38.6 2.8 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF3387) Helicase_C PF00271.26 gi|304315080|ref|YP_003850227.1| - 0.00024 20.9 0.0 0.00076 19.3 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|304315080|ref|YP_003850227.1| - 0.00098 19.2 0.0 0.0066 16.5 0.0 2.5 1 0 0 1 1 1 1 AAA domain SNF2_N PF00176.18 gi|304315080|ref|YP_003850227.1| - 0.0031 16.3 0.0 0.016 14.0 0.0 2.0 1 1 0 2 2 2 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|304315080|ref|YP_003850227.1| - 0.0042 16.1 0.0 0.0087 15.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|304315080|ref|YP_003850227.1| - 0.013 14.9 0.0 0.051 13.0 0.0 1.9 2 0 0 2 2 2 0 DEAD/DEAH box helicase Glutaminase PF04960.10 gi|304315080|ref|YP_003850227.1| - 0.23 10.4 0.0 0.37 9.7 0.0 1.3 1 0 0 1 1 1 0 Glutaminase Methylase_S PF01420.14 gi|304315081|ref|YP_003850228.1| - 1.5e-43 148.6 0.4 2.8e-27 95.7 0.1 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain AAT PF03417.11 gi|304315081|ref|YP_003850228.1| - 0.0058 16.1 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase N6_Mtase PF02384.11 gi|304315082|ref|YP_003850229.1| - 2.3e-115 384.9 0.0 3.3e-115 384.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|304315082|ref|YP_003850229.1| - 3.3e-14 53.4 5.8 1.7e-12 47.9 3.4 2.7 2 0 0 2 2 2 1 HsdM N-terminal domain Eco57I PF07669.6 gi|304315082|ref|YP_003850229.1| - 9e-05 22.7 0.0 0.00037 20.7 0.0 2.1 2 1 0 2 2 2 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|304315082|ref|YP_003850229.1| - 0.00011 22.1 0.0 0.00027 20.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain HTH_27 PF13463.1 gi|304315082|ref|YP_003850229.1| - 0.00012 22.3 0.1 0.00079 19.7 0.0 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|304315082|ref|YP_003850229.1| - 0.0052 16.4 0.0 0.015 14.9 0.0 1.8 1 0 0 1 1 1 1 MarR family UPF0020 PF01170.13 gi|304315082|ref|YP_003850229.1| - 0.012 15.2 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PaaX PF07848.7 gi|304315082|ref|YP_003850229.1| - 0.038 13.9 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.17 gi|304315082|ref|YP_003850229.1| - 0.038 13.7 0.1 0.094 12.4 0.1 1.6 1 0 0 1 1 1 0 MarR family MTS PF05175.9 gi|304315082|ref|YP_003850229.1| - 0.054 12.8 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PEPcase_2 PF14010.1 gi|304315083|ref|YP_003850230.1| - 3.2e-191 635.9 0.0 3.6e-191 635.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Claudin_3 PF06653.6 gi|304315084|ref|YP_003850231.1| - 4.6 6.9 14.1 0.093 12.4 3.9 2.3 1 1 0 2 2 2 0 Tight junction protein, Claudin-like ATP-grasp_3 PF02655.9 gi|304315085|ref|YP_003850232.1| - 4.4e-40 137.1 0.1 1.2e-39 135.7 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|304315085|ref|YP_003850232.1| - 4.1e-16 58.6 0.0 6.1e-10 38.3 0.0 2.2 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|304315085|ref|YP_003850232.1| - 1.6e-13 50.8 0.0 8e-12 45.2 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|304315085|ref|YP_003850232.1| - 3.8e-05 23.0 0.1 0.00013 21.3 0.0 1.9 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|304315085|ref|YP_003850232.1| - 0.00075 19.0 0.0 0.025 14.0 0.0 2.2 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Ribosomal_L22e PF01776.12 gi|304315086|ref|YP_003850233.1| - 0.071 13.1 0.1 0.092 12.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L22e protein family LGT PF01790.13 gi|304315087|ref|YP_003850234.1| - 0.01 14.7 0.0 0.011 14.7 0.0 1.0 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase ODV-E18 PF10717.4 gi|304315087|ref|YP_003850234.1| - 0.23 10.9 1.5 0.23 10.8 1.0 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 ATP1G1_PLM_MAT8 PF02038.11 gi|304315087|ref|YP_003850234.1| - 3.3 6.7 6.3 3.5 6.6 4.0 1.4 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF61 PF01886.11 gi|304315088|ref|YP_003850235.1| - 1.1e-45 154.6 0.4 1.2e-45 154.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 CK2S PF15011.1 gi|304315090|ref|YP_003850237.1| - 0.0024 17.6 2.8 0.042 13.6 0.1 2.1 1 1 1 2 2 2 1 Casein Kinase 2 substrate ATP-synt_D PF01813.12 gi|304315090|ref|YP_003850237.1| - 0.0074 15.8 5.4 0.15 11.5 1.1 2.1 1 1 1 2 2 2 2 ATP synthase subunit D DNAJ_related PF12339.3 gi|304315090|ref|YP_003850237.1| - 0.036 13.9 0.5 0.77 9.6 0.1 2.1 2 0 0 2 2 2 0 DNA-J related protein Prominin PF05478.6 gi|304315090|ref|YP_003850237.1| - 0.048 11.2 1.0 1.2 6.6 0.1 2.3 1 1 2 3 3 3 0 Prominin Hemerythrin PF01814.18 gi|304315090|ref|YP_003850237.1| - 0.065 13.3 3.0 0.097 12.8 2.1 1.3 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Tektin PF03148.9 gi|304315090|ref|YP_003850237.1| - 0.079 11.4 4.4 1.5 7.3 0.2 2.0 1 1 1 2 2 2 0 Tektin family DUF4201 PF13870.1 gi|304315090|ref|YP_003850237.1| - 0.086 12.2 5.0 0.33 10.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Syntaxin-6_N PF09177.6 gi|304315090|ref|YP_003850237.1| - 0.088 13.2 1.7 0.88 10.0 0.6 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF4047 PF13256.1 gi|304315090|ref|YP_003850237.1| - 0.11 12.4 1.5 10 6.0 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4047) DUF342 PF03961.8 gi|304315090|ref|YP_003850237.1| - 0.17 10.2 0.6 0.21 9.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DivIC PF04977.10 gi|304315090|ref|YP_003850237.1| - 0.19 11.2 3.4 5.9 6.4 0.0 2.5 3 0 0 3 3 3 0 Septum formation initiator DUF848 PF05852.6 gi|304315090|ref|YP_003850237.1| - 0.2 11.5 4.0 0.21 11.4 0.6 2.1 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF883 PF05957.8 gi|304315090|ref|YP_003850237.1| - 0.32 11.4 3.4 0.53 10.7 0.6 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) COG2 PF06148.6 gi|304315090|ref|YP_003850237.1| - 0.32 10.8 3.5 2.2 8.1 2.1 2.2 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF904 PF06005.7 gi|304315090|ref|YP_003850237.1| - 0.44 10.8 6.5 64 3.9 4.5 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF904) IncA PF04156.9 gi|304315090|ref|YP_003850237.1| - 0.83 9.2 6.3 2.6 7.6 4.4 1.7 1 1 0 1 1 1 0 IncA protein TMF_TATA_bd PF12325.3 gi|304315090|ref|YP_003850237.1| - 1.9 8.2 12.6 9.7 5.9 1.3 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CorA PF01544.13 gi|304315090|ref|YP_003850237.1| - 2.3 7.1 8.0 1.9 7.4 1.1 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF22 PF01629.11 gi|304315091|ref|YP_003850238.1| - 8e-31 105.8 0.1 9e-31 105.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 ATP-synt_D PF01813.12 gi|304315092|ref|YP_003850239.1| - 5.9e-70 234.8 13.5 6.7e-70 234.6 9.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|304315093|ref|YP_003850240.1| - 1.4e-62 210.9 0.0 1.9e-62 210.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|304315093|ref|YP_003850240.1| - 2e-15 57.2 0.1 5.6e-15 55.7 0.0 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|304315093|ref|YP_003850240.1| - 4.4e-12 46.0 3.3 1e-11 44.8 2.3 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|304315093|ref|YP_003850240.1| - 3.8e-07 29.8 1.8 9.7e-07 28.6 1.3 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|304315094|ref|YP_003850241.1| - 5.3e-96 320.2 0.0 1.1e-95 319.2 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|304315094|ref|YP_003850241.1| - 1.2e-20 74.0 0.1 3.3e-20 72.6 0.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|304315094|ref|YP_003850241.1| - 4.5e-16 58.8 2.5 1e-15 57.6 1.7 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|304315094|ref|YP_003850241.1| - 0.023 14.8 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.17 gi|304315094|ref|YP_003850241.1| - 0.13 12.2 0.1 5.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.12 gi|304315095|ref|YP_003850242.1| - 4.7e-28 97.4 0.5 5.3e-28 97.2 0.3 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|304315096|ref|YP_003850243.1| - 3.1e-119 398.0 0.1 3.6e-119 397.8 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit SinI PF08671.5 gi|304315096|ref|YP_003850243.1| - 0.12 11.7 0.2 23 4.5 0.0 3.2 3 0 0 3 3 3 0 Anti-repressor SinI vATP-synt_E PF01991.13 gi|304315097|ref|YP_003850244.1| - 2.2e-56 190.2 14.8 2.5e-56 190.1 10.3 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|304315097|ref|YP_003850244.1| - 0.00084 19.1 24.6 0.001 18.8 6.7 3.0 2 1 1 3 3 3 2 ATP synthase B/B' CF(0) SART-1 PF03343.8 gi|304315097|ref|YP_003850244.1| - 0.015 13.6 4.5 0.017 13.4 3.1 1.1 1 0 0 1 1 1 0 SART-1 family HrpE PF06188.7 gi|304315097|ref|YP_003850244.1| - 0.031 14.0 15.2 0.4 10.3 0.8 2.1 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.8 gi|304315097|ref|YP_003850244.1| - 1.5 8.8 18.2 0.22 11.5 2.9 2.8 2 1 1 3 3 3 0 DivIVA protein KfrA_N PF11740.3 gi|304315097|ref|YP_003850244.1| - 9.1 6.7 19.8 4.2 7.8 1.4 2.7 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term ATP-synt_C PF00137.16 gi|304315098|ref|YP_003850245.1| - 1.5e-40 136.8 35.0 1.6e-20 72.7 10.2 2.3 2 0 0 2 2 2 2 ATP synthase subunit C KRTAP PF11759.3 gi|304315098|ref|YP_003850245.1| - 0.21 11.8 9.0 2.7 8.3 1.5 2.3 2 0 0 2 2 2 0 Keratin-associated matrix V_ATPase_I PF01496.14 gi|304315099|ref|YP_003850246.1| - 1.1e-142 476.5 10.1 3e-110 369.3 0.1 2.1 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family ATP-synt_B PF00430.13 gi|304315100|ref|YP_003850247.1| - 8.2e-05 22.4 15.1 0.018 14.8 4.2 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|304315100|ref|YP_003850247.1| - 0.0007 18.8 13.8 0.13 11.4 6.2 3.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|304315100|ref|YP_003850247.1| - 0.0018 18.0 5.4 0.0054 16.4 3.8 1.8 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|304315100|ref|YP_003850247.1| - 0.011 16.1 9.8 0.058 13.7 2.0 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HAUS-augmin3 PF14932.1 gi|304315100|ref|YP_003850247.1| - 0.022 13.9 4.4 0.025 13.7 3.0 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 HIRAN PF08797.6 gi|304315100|ref|YP_003850247.1| - 0.023 14.6 0.1 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 HIRAN domain V-ATPase_G PF03179.10 gi|304315100|ref|YP_003850247.1| - 0.06 13.6 12.5 0.22 11.8 8.6 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit LUC7 PF03194.10 gi|304315100|ref|YP_003850247.1| - 0.097 12.1 6.0 0.11 11.9 4.2 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DivIVA PF05103.8 gi|304315100|ref|YP_003850247.1| - 0.12 12.4 10.2 2.6 8.0 7.0 2.1 1 1 0 1 1 1 0 DivIVA protein ISG65-75 PF11727.3 gi|304315100|ref|YP_003850247.1| - 0.24 10.4 6.8 0.28 10.1 4.7 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein TATR PF03430.8 gi|304315100|ref|YP_003850247.1| - 1.1 7.8 5.0 1.2 7.7 3.4 1.0 1 0 0 1 1 1 0 Trans-activating transcriptional regulator YtxH PF12732.2 gi|304315100|ref|YP_003850247.1| - 2.2 8.6 6.4 6.9 7.1 4.4 1.9 1 1 0 1 1 1 0 YtxH-like protein PTS_IIA PF02255.11 gi|304315100|ref|YP_003850247.1| - 2.4 8.0 9.3 5.3 6.9 0.7 2.9 1 1 2 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit Citrate_synt PF00285.16 gi|304315101|ref|YP_003850248.1| - 5.9e-40 137.0 0.0 3.9e-33 114.6 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase Fumerase PF05681.9 gi|304315102|ref|YP_003850249.1| - 1.3e-63 214.6 0.0 1.5e-63 214.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Peptidase_U32 PF01136.14 gi|304315103|ref|YP_003850250.1| - 1.6e-06 27.2 0.0 3.7e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 Peptidase family U32 Amidohydro_2 PF04909.9 gi|304315103|ref|YP_003850250.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase MmgE_PrpD PF03972.9 gi|304315104|ref|YP_003850251.1| - 2e-119 398.7 0.0 2.3e-119 398.4 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family DUF1743 PF08489.6 gi|304315105|ref|YP_003850252.1| - 1.7e-38 130.9 0.0 5.2e-38 129.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|304315105|ref|YP_003850252.1| - 4.1e-05 23.3 0.0 8.7e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|304315105|ref|YP_003850252.1| - 0.0039 17.0 0.0 0.0089 15.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1610 PF07754.6 gi|304315105|ref|YP_003850252.1| - 3.5 7.8 6.8 0.37 10.9 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HTH_3 PF01381.17 gi|304315106|ref|YP_003850253.1| - 3.6e-15 55.5 0.8 1.5e-14 53.5 0.2 2.3 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.1 gi|304315106|ref|YP_003850253.1| - 1.7e-12 47.3 0.0 3.4e-09 36.7 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_19 PF12844.2 gi|304315106|ref|YP_003850253.1| - 1.7e-10 40.7 0.8 8.1e-10 38.6 0.2 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|304315106|ref|YP_003850253.1| - 5.1e-05 22.8 0.2 0.0067 16.0 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|304315106|ref|YP_003850253.1| - 0.0028 17.2 0.0 0.01 15.4 0.0 1.9 1 0 0 1 1 1 1 HTH domain LacI PF00356.16 gi|304315106|ref|YP_003850253.1| - 0.0038 16.8 0.0 0.019 14.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_26 PF13443.1 gi|304315106|ref|YP_003850253.1| - 0.0049 17.0 0.1 0.0098 16.0 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.2 gi|304315106|ref|YP_003850253.1| - 0.012 15.7 0.0 0.043 14.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.18 gi|304315106|ref|YP_003850253.1| - 0.024 14.2 0.0 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|304315106|ref|YP_003850253.1| - 0.071 12.7 0.8 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain 2-Hacid_dh_C PF02826.14 gi|304315109|ref|YP_003850256.1| - 1.8e-70 235.6 0.1 4.1e-70 234.5 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|304315109|ref|YP_003850256.1| - 1.5e-43 147.4 4.5 3.7e-43 146.1 0.6 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|304315109|ref|YP_003850256.1| - 1.7e-09 36.9 3.2 1.9e-09 36.7 0.0 2.8 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.10 gi|304315109|ref|YP_003850256.1| - 2.3e-06 27.5 1.1 6.6e-06 26.0 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|304315109|ref|YP_003850256.1| - 6.3e-06 26.2 0.2 0.00046 20.2 0.0 2.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|304315109|ref|YP_003850256.1| - 1e-05 25.8 1.2 0.0074 16.6 0.0 2.9 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|304315109|ref|YP_003850256.1| - 9.1e-05 22.3 0.7 0.00022 21.0 0.0 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|304315109|ref|YP_003850256.1| - 0.0002 20.7 0.1 0.00064 19.1 0.0 1.9 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|304315109|ref|YP_003850256.1| - 0.0087 16.3 0.2 0.05 13.8 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|304315109|ref|YP_003850256.1| - 0.044 14.2 0.1 0.84 10.1 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|304315109|ref|YP_003850256.1| - 0.13 12.2 5.2 1.5 8.8 0.0 2.8 2 0 0 2 2 2 0 TrkA-N domain JAB PF01398.16 gi|304315110|ref|YP_003850257.1| - 4.9e-14 52.0 0.0 1.9e-13 50.1 0.0 1.8 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Prok-JAB PF14464.1 gi|304315110|ref|YP_003850257.1| - 1.4e-13 50.2 0.0 1.8e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Toxin-JAB1 PF15659.1 gi|304315110|ref|YP_003850257.1| - 0.084 12.7 0.0 0.098 12.5 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 Thg1 PF04446.7 gi|304315111|ref|YP_003850258.1| - 7.2e-32 109.8 0.0 9.5e-32 109.4 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|304315111|ref|YP_003850258.1| - 3.2e-23 81.7 0.0 4.3e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain DUF108 PF01958.13 gi|304315112|ref|YP_003850259.1| - 1.1e-31 108.8 0.1 1.8e-31 108.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|304315112|ref|YP_003850259.1| - 2.7e-24 85.7 0.0 5.1e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|304315112|ref|YP_003850259.1| - 1.7e-06 28.3 0.2 3.8e-06 27.2 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|304315112|ref|YP_003850259.1| - 0.0013 19.2 0.0 0.0029 18.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|304315112|ref|YP_003850259.1| - 0.0017 18.6 0.1 0.0026 18.0 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|304315112|ref|YP_003850259.1| - 0.0022 17.9 0.2 0.02 14.8 0.0 2.2 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus PRC PF05239.11 gi|304315113|ref|YP_003850260.1| - 1.7e-12 47.0 2.7 7.3e-12 44.9 1.9 1.9 1 1 0 1 1 1 1 PRC-barrel domain RsmJ PF04378.8 gi|304315113|ref|YP_003850260.1| - 0.081 11.9 0.0 0.087 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ tRNA_bind PF01588.15 gi|304315114|ref|YP_003850261.1| - 8.1e-18 64.0 0.0 1.2e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain TPR_5 PF12688.2 gi|304315114|ref|YP_003850261.1| - 0.082 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Tetratrico peptide repeat Radical_SAM PF04055.16 gi|304315115|ref|YP_003850262.1| - 3.5e-26 92.3 0.0 5.6e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304315115|ref|YP_003850262.1| - 1.8e-11 44.3 1.0 9.6e-11 41.9 0.0 2.4 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304315115|ref|YP_003850262.1| - 9.7e-09 35.2 1.7 1.9e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Aldedh PF00171.17 gi|304315116|ref|YP_003850263.1| - 2.7e-164 546.8 0.0 3.2e-164 546.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|304315116|ref|YP_003850263.1| - 7.7e-05 21.5 0.0 0.00011 21.0 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Hpt PF01627.18 gi|304315116|ref|YP_003850263.1| - 0.019 14.9 0.3 0.041 13.8 0.2 1.5 1 0 0 1 1 1 0 Hpt domain DUF3731 PF12531.3 gi|304315116|ref|YP_003850263.1| - 0.14 11.6 0.1 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 DNA-K related protein Class_IIIsignal PF04021.7 gi|304315117|ref|YP_003850264.1| - 0.0001 21.8 2.1 0.00015 21.3 1.5 1.3 1 0 0 1 1 1 1 Class III signal peptide TadE PF07811.7 gi|304315117|ref|YP_003850264.1| - 0.027 14.3 0.1 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 TadE-like protein DUF4363 PF14276.1 gi|304315117|ref|YP_003850264.1| - 0.059 13.0 0.1 0.065 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) MscS_TM PF12794.2 gi|304315117|ref|YP_003850264.1| - 0.075 11.6 0.0 0.088 11.4 0.0 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF929 PF06053.6 gi|304315117|ref|YP_003850264.1| - 0.1 11.6 0.3 0.11 11.5 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF929) T2SF PF00482.18 gi|304315118|ref|YP_003850265.1| - 1.2e-20 73.6 3.4 1.2e-20 73.6 2.3 3.1 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F PRT_C PF08372.5 gi|304315118|ref|YP_003850265.1| - 0.17 11.3 1.5 0.21 11.1 0.1 1.8 2 0 0 2 2 2 0 Plant phosphoribosyltransferase C-terminal Yip1 PF04893.12 gi|304315118|ref|YP_003850265.1| - 0.42 10.0 19.6 0.49 9.8 5.4 2.2 2 0 0 2 2 2 0 Yip1 domain Peptidase_M24 PF00557.19 gi|304315119|ref|YP_003850266.1| - 4.9e-49 166.7 0.0 8.2e-49 165.9 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|304315119|ref|YP_003850266.1| - 1e-09 38.9 0.0 1.9e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF268 PF03269.9 gi|304315119|ref|YP_003850266.1| - 0.041 13.4 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF268 HIT PF01230.18 gi|304315120|ref|YP_003850267.1| - 0.0027 18.2 0.0 0.0038 17.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain Fe-ADH PF00465.14 gi|304315121|ref|YP_003850268.1| - 1.8e-119 398.6 0.4 2.1e-119 398.4 0.3 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|304315121|ref|YP_003850268.1| - 9.6e-18 64.3 2.9 1.7e-10 40.6 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase HisKA_2 PF07568.7 gi|304315122|ref|YP_003850269.1| - 8.9e-31 105.5 0.5 1.7e-30 104.6 0.3 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|304315122|ref|YP_003850269.1| - 9.5e-15 54.2 0.0 2.5e-14 52.9 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|304315122|ref|YP_003850269.1| - 9.7e-14 51.6 0.2 4.7e-13 49.4 0.0 2.3 3 1 1 4 4 4 1 PAS domain PAS PF00989.19 gi|304315122|ref|YP_003850269.1| - 1.8e-10 40.6 0.0 8.7e-10 38.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|304315122|ref|YP_003850269.1| - 2.2e-09 37.1 0.0 4.3e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|304315122|ref|YP_003850269.1| - 9.9e-09 34.7 0.0 2.7e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|304315122|ref|YP_003850269.1| - 3.2e-06 27.4 0.1 9.9e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS_4 PF08448.5 gi|304315122|ref|YP_003850269.1| - 7.3e-06 25.9 0.0 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold Kinesin-related PF06548.6 gi|304315122|ref|YP_003850269.1| - 0.017 13.7 0.7 0.023 13.2 0.5 1.1 1 0 0 1 1 1 0 Kinesin-related HATPase_c_3 PF13589.1 gi|304315122|ref|YP_003850269.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_M50 PF02163.17 gi|304315123|ref|YP_003850270.1| - 8.2e-15 54.2 12.8 6.1e-14 51.4 8.9 2.1 1 1 0 1 1 1 1 Peptidase family M50 PetL PF05115.9 gi|304315123|ref|YP_003850270.1| - 0.1 12.4 0.4 0.1 12.4 0.3 2.9 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit VI (PetL) UPF0060 PF02694.10 gi|304315123|ref|YP_003850270.1| - 5 7.1 10.3 0.32 11.0 3.2 2.0 2 1 1 3 3 3 0 Uncharacterised BCR, YnfA/UPF0060 family YcaO PF02624.11 gi|304315124|ref|YP_003850271.1| - 3.3e-95 319.3 1.7 1.1e-94 317.7 0.9 1.7 2 0 0 2 2 2 1 YcaO-like family Resolvase PF00239.16 gi|304315124|ref|YP_003850271.1| - 0.24 11.2 1.5 1.2 8.9 0.2 2.4 3 0 0 3 3 3 0 Resolvase, N terminal domain TfuA PF07812.7 gi|304315125|ref|YP_003850272.1| - 1.8e-41 140.3 0.0 2.7e-41 139.7 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein DUF3134 PF11332.3 gi|304315125|ref|YP_003850272.1| - 0.053 13.6 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3134) DUF695 PF05117.7 gi|304315125|ref|YP_003850272.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF695) QueC PF06508.8 gi|304315126|ref|YP_003850273.1| - 4.6e-05 22.8 0.0 0.0018 17.5 0.0 2.3 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|304315126|ref|YP_003850273.1| - 0.00027 20.5 0.3 0.00061 19.3 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|304315126|ref|YP_003850273.1| - 0.001 18.9 0.0 0.005 16.6 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|304315126|ref|YP_003850273.1| - 0.0015 18.0 0.2 0.085 12.3 0.1 2.6 1 1 0 1 1 1 1 PP-loop family CBS PF00571.23 gi|304315128|ref|YP_003850275.1| - 3.2e-48 161.2 8.2 5e-16 58.2 1.0 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|304315129|ref|YP_003850276.1| - 9.9e-39 132.7 1.9 1.1e-38 132.5 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|304315129|ref|YP_003850276.1| - 0.085 12.5 0.3 0.95 9.1 0.2 2.1 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Amidohydro_1 PF01979.15 gi|304315130|ref|YP_003850277.1| - 1e-32 114.1 0.0 1.2e-32 113.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|304315130|ref|YP_003850277.1| - 8.8e-14 52.1 1.0 1.3e-13 51.5 0.7 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|304315130|ref|YP_003850277.1| - 3.9e-10 39.3 0.1 9.1e-10 38.2 0.1 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304315130|ref|YP_003850277.1| - 4.7e-09 35.9 0.7 3.9e-07 29.6 0.5 2.9 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.17 gi|304315130|ref|YP_003850277.1| - 0.029 13.2 0.0 0.058 12.2 0.0 1.4 1 0 0 1 1 1 0 Adenosine/AMP deaminase PKD PF00801.15 gi|304315131|ref|YP_003850278.1| - 1.1e-14 53.9 1.6 3.9e-14 52.1 1.1 2.0 1 0 0 1 1 1 1 PKD domain CARDB PF07705.6 gi|304315131|ref|YP_003850278.1| - 3e-10 40.0 5.6 4e-10 39.6 0.7 2.9 3 0 0 3 3 3 1 CARDB Big_3_4 PF13754.1 gi|304315131|ref|YP_003850278.1| - 0.01 16.1 1.9 0.01 16.1 1.3 2.2 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) UPF0180 PF03698.8 gi|304315131|ref|YP_003850278.1| - 0.034 13.9 0.1 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) CPSase_L_D2 PF02786.12 gi|304315132|ref|YP_003850279.1| - 3.6e-119 395.6 0.1 2e-77 259.2 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|304315132|ref|YP_003850279.1| - 1.2e-51 173.4 0.6 1e-24 86.7 0.1 3.0 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|304315132|ref|YP_003850279.1| - 1.6e-45 153.8 0.0 4.4e-45 152.4 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|304315132|ref|YP_003850279.1| - 2.9e-40 137.9 0.3 5.7e-19 68.5 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|304315132|ref|YP_003850279.1| - 4.6e-31 107.7 0.0 1.2e-11 43.9 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|304315132|ref|YP_003850279.1| - 9.1e-20 70.7 0.0 9.6e-12 44.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.17 gi|304315132|ref|YP_003850279.1| - 5.1e-19 67.9 0.1 9.3e-18 63.9 0.0 2.9 2 0 0 2 2 2 1 MGS-like domain Dala_Dala_lig_C PF07478.8 gi|304315132|ref|YP_003850279.1| - 2e-17 63.2 0.1 1.4e-07 31.0 0.0 3.2 3 1 0 3 3 3 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|304315132|ref|YP_003850279.1| - 4.2e-11 42.9 0.2 2.2e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|304315132|ref|YP_003850279.1| - 3.6e-10 39.7 0.0 0.00048 19.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|304315132|ref|YP_003850279.1| - 1.1e-09 38.0 0.0 0.00012 21.5 0.0 3.2 2 1 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|304315132|ref|YP_003850279.1| - 1e-05 24.8 0.0 0.017 14.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Hydrolase PF00702.21 gi|304315132|ref|YP_003850279.1| - 0.00082 19.8 2.0 9.6 6.5 0.0 4.0 3 1 0 4 4 4 0 haloacid dehalogenase-like hydrolase ATP-grasp_2 PF08442.5 gi|304315132|ref|YP_003850279.1| - 0.002 17.5 0.0 1.8 7.8 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain Epimerase PF01370.16 gi|304315132|ref|YP_003850279.1| - 0.047 13.1 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Isochorismatase PF00857.15 gi|304315132|ref|YP_003850279.1| - 0.098 12.5 0.7 0.54 10.1 0.1 2.5 4 0 0 4 4 4 0 Isochorismatase family CPSase_sm_chain PF00988.17 gi|304315133|ref|YP_003850280.1| - 1.3e-51 173.4 0.0 2.1e-51 172.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|304315133|ref|YP_003850280.1| - 4.8e-43 146.8 0.0 6.3e-43 146.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|304315133|ref|YP_003850280.1| - 3.4e-09 36.4 0.1 0.00061 19.2 0.0 2.3 1 1 1 2 2 2 2 Peptidase C26 Acetyltransf_1 PF00583.19 gi|304315134|ref|YP_003850281.1| - 9.8e-21 73.5 0.4 1.4e-20 73.1 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|304315134|ref|YP_003850281.1| - 3.2e-15 56.0 0.4 4.7e-15 55.5 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|304315134|ref|YP_003850281.1| - 1.7e-11 44.2 0.0 2.6e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|304315134|ref|YP_003850281.1| - 2.5e-10 40.5 0.4 6.4e-10 39.1 0.3 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|304315134|ref|YP_003850281.1| - 7.6e-08 32.0 0.0 1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|304315134|ref|YP_003850281.1| - 1.8e-07 31.4 0.1 2.7e-07 30.8 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|304315134|ref|YP_003850281.1| - 1e-06 28.6 0.1 4.9e-06 26.4 0.1 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|304315134|ref|YP_003850281.1| - 1e-05 25.3 0.0 3.5e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|304315134|ref|YP_003850281.1| - 0.0019 18.1 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|304315134|ref|YP_003850281.1| - 0.004 17.0 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|304315134|ref|YP_003850281.1| - 0.042 13.4 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0146 PF03686.8 gi|304315135|ref|YP_003850282.1| - 1.6e-40 137.8 0.0 1.8e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) E1-E2_ATPase PF00122.15 gi|304315136|ref|YP_003850283.1| - 5.8e-79 264.3 4.8 5.8e-79 264.3 3.3 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|304315136|ref|YP_003850283.1| - 8.9e-45 152.4 6.1 8.9e-45 152.4 4.2 2.0 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|304315136|ref|YP_003850283.1| - 5.5e-44 151.1 0.1 1e-43 150.2 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|304315136|ref|YP_003850283.1| - 8.5e-23 79.5 0.1 1.8e-22 78.5 0.1 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|304315136|ref|YP_003850283.1| - 1.1e-22 79.7 0.0 3e-22 78.3 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|304315136|ref|YP_003850283.1| - 1.9e-20 73.8 0.1 7e-20 72.0 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|304315136|ref|YP_003850283.1| - 1.8e-08 34.2 0.2 1.4e-05 24.8 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase CbiJ PF02571.9 gi|304315137|ref|YP_003850284.1| - 1.5e-58 198.1 0.1 1.6e-58 197.9 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK Glycos_transf_N PF04413.11 gi|304315137|ref|YP_003850284.1| - 0.027 13.6 0.0 0.056 12.6 0.0 1.6 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MoeA_N PF03453.12 gi|304315138|ref|YP_003850285.1| - 7.9e-50 168.3 0.1 1.3e-49 167.6 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|304315138|ref|YP_003850285.1| - 1.6e-30 105.4 0.1 2.5e-30 104.8 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|304315138|ref|YP_003850285.1| - 9.5e-19 67.1 0.1 3.6e-18 65.2 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) eIF-1a PF01176.14 gi|304315139|ref|YP_003850286.1| - 2.2e-26 91.0 1.2 2.8e-26 90.7 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|304315140|ref|YP_003850287.1| - 5.6e-65 218.2 0.0 7.5e-65 217.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|304315140|ref|YP_003850287.1| - 0.00013 21.0 0.2 0.055 12.5 0.0 2.1 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|304315140|ref|YP_003850287.1| - 0.00033 20.4 1.5 0.0029 17.3 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family KH_1 PF00013.24 gi|304315141|ref|YP_003850288.1| - 4.1e-16 58.3 3.1 1.7e-07 30.7 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|304315141|ref|YP_003850288.1| - 3.3e-08 32.9 2.3 0.006 16.2 0.7 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|304315141|ref|YP_003850288.1| - 0.0001 21.7 5.4 0.071 12.6 0.3 2.8 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|304315141|ref|YP_003850288.1| - 0.019 14.5 3.8 0.75 9.4 0.0 2.8 2 1 0 2 2 2 0 KH domain Topo-VIb_trans PF09239.6 gi|304315142|ref|YP_003850289.1| - 2.3e-63 212.4 0.0 3.8e-63 211.8 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|304315142|ref|YP_003850289.1| - 4e-15 55.4 0.1 2.2e-14 53.0 0.0 2.0 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|304315142|ref|YP_003850289.1| - 7.5e-09 35.3 0.1 1.7e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP6A_N PF04406.9 gi|304315143|ref|YP_003850290.1| - 5.2e-20 70.8 0.0 9e-20 70.1 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Toprim_2 PF13155.1 gi|304315143|ref|YP_003850290.1| - 0.12 12.6 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Gp_dh_C PF02800.15 gi|304315144|ref|YP_003850291.1| - 1.1e-30 106.1 0.1 1.7e-30 105.5 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|304315144|ref|YP_003850291.1| - 2.4e-23 82.7 0.2 9.1e-23 80.8 0.0 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|304315144|ref|YP_003850291.1| - 5.4e-12 45.7 0.2 1.4e-11 44.3 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|304315144|ref|YP_003850291.1| - 0.00048 20.4 0.1 0.00092 19.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|304315144|ref|YP_003850291.1| - 0.001 18.2 0.2 0.013 14.6 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|304315144|ref|YP_003850291.1| - 0.0015 19.0 0.3 0.0097 16.4 0.0 2.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|304315144|ref|YP_003850291.1| - 0.0022 18.3 0.1 0.0072 16.7 0.1 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|304315144|ref|YP_003850291.1| - 0.0082 15.8 0.2 0.024 14.3 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF348 PF03990.9 gi|304315144|ref|YP_003850291.1| - 0.022 14.3 0.7 0.072 12.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF348) NAD_binding_10 PF13460.1 gi|304315144|ref|YP_003850291.1| - 0.027 14.5 0.1 0.62 10.0 0.1 2.4 1 1 0 1 1 1 0 NADH(P)-binding F420_oxidored PF03807.12 gi|304315144|ref|YP_003850291.1| - 0.033 14.6 0.3 0.53 10.7 0.1 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|304315144|ref|YP_003850291.1| - 0.04 13.9 3.1 0.055 13.4 0.1 2.8 3 2 0 3 3 3 0 TrkA-N domain Saccharop_dh PF03435.13 gi|304315144|ref|YP_003850291.1| - 0.057 12.4 0.1 0.13 11.2 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase Phos_pyr_kin PF08543.7 gi|304315144|ref|YP_003850291.1| - 0.064 12.4 0.2 0.57 9.3 0.0 2.1 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase AP_endonuc_2 PF01261.19 gi|304315145|ref|YP_003850292.1| - 6.5e-19 68.0 0.2 1e-18 67.4 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|304315145|ref|YP_003850292.1| - 0.11 11.4 0.0 0.34 9.8 0.0 1.6 1 1 1 2 2 2 0 UV-endonuclease UvdE AAA PF00004.24 gi|304315146|ref|YP_003850293.1| - 7e-37 126.5 0.0 1.5e-36 125.4 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|304315146|ref|YP_003850293.1| - 8.5e-09 34.8 0.0 1.6e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|304315146|ref|YP_003850293.1| - 9.9e-08 32.0 0.0 2.2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|304315146|ref|YP_003850293.1| - 2.8e-06 27.4 0.1 0.00017 21.7 0.0 2.5 2 1 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|304315146|ref|YP_003850293.1| - 3.7e-05 22.6 0.0 8.8e-05 21.3 0.0 1.5 2 0 0 2 2 2 1 TIP49 C-terminus AAA_16 PF13191.1 gi|304315146|ref|YP_003850293.1| - 4e-05 23.6 0.0 0.0017 18.3 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|304315146|ref|YP_003850293.1| - 6.8e-05 22.6 0.1 0.0026 17.4 0.1 3.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|304315146|ref|YP_003850293.1| - 6.8e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304315146|ref|YP_003850293.1| - 0.00023 21.9 1.6 0.00063 20.5 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304315146|ref|YP_003850293.1| - 0.00057 20.1 0.0 0.0022 18.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|304315146|ref|YP_003850293.1| - 0.00073 18.7 0.0 0.0022 17.1 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|304315146|ref|YP_003850293.1| - 0.0013 18.1 0.0 0.0027 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|304315146|ref|YP_003850293.1| - 0.0014 18.3 0.0 0.0043 16.7 0.0 1.9 1 1 1 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|304315146|ref|YP_003850293.1| - 0.004 16.5 0.0 0.0063 15.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|304315146|ref|YP_003850293.1| - 0.0057 16.6 0.0 0.014 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|304315146|ref|YP_003850293.1| - 0.0089 15.1 0.1 0.077 12.0 0.0 2.2 1 1 1 2 2 2 1 Zeta toxin RNA_helicase PF00910.17 gi|304315146|ref|YP_003850293.1| - 0.01 16.0 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.6 gi|304315146|ref|YP_003850293.1| - 0.016 14.7 0.0 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.6 gi|304315146|ref|YP_003850293.1| - 0.02 14.7 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 Torsin DUF2075 PF09848.4 gi|304315146|ref|YP_003850293.1| - 0.025 13.5 0.0 0.047 12.6 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|304315146|ref|YP_003850293.1| - 0.025 14.0 0.7 2.9 7.2 0.1 2.7 1 1 2 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|304315146|ref|YP_003850293.1| - 0.056 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF815 PF05673.8 gi|304315146|ref|YP_003850293.1| - 0.058 12.3 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Parvo_NS1 PF01057.12 gi|304315146|ref|YP_003850293.1| - 0.065 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_14 PF13173.1 gi|304315146|ref|YP_003850293.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|304315146|ref|YP_003850293.1| - 0.099 12.5 0.0 0.88 9.4 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase Shikimate_DH PF01488.15 gi|304315147|ref|YP_003850294.1| - 4.4e-39 133.6 0.1 7.5e-39 132.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|304315147|ref|YP_003850294.1| - 2.3e-32 111.7 0.1 2.6e-31 108.2 0.1 2.3 1 1 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|304315147|ref|YP_003850294.1| - 1.2e-23 82.9 1.4 3.1e-23 81.6 1.0 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|304315147|ref|YP_003850294.1| - 2.1e-07 31.2 0.2 1e-06 29.0 0.0 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|304315147|ref|YP_003850294.1| - 1.6e-05 25.0 0.1 3.2e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|304315147|ref|YP_003850294.1| - 2e-05 23.7 0.0 2.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|304315147|ref|YP_003850294.1| - 7.2e-05 22.7 0.0 0.00018 21.4 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|304315147|ref|YP_003850294.1| - 8e-05 21.8 0.1 0.00015 20.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|304315147|ref|YP_003850294.1| - 8.7e-05 22.7 0.0 0.00017 21.7 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|304315147|ref|YP_003850294.1| - 0.00012 22.0 0.1 0.00025 21.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.14 gi|304315147|ref|YP_003850294.1| - 0.00025 20.1 0.3 0.0049 15.9 0.1 2.6 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.10 gi|304315147|ref|YP_003850294.1| - 0.00058 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase OCD_Mu_crystall PF02423.10 gi|304315147|ref|YP_003850294.1| - 0.00092 18.0 0.0 0.0017 17.1 0.0 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|304315147|ref|YP_003850294.1| - 0.005 17.3 0.0 0.011 16.3 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|304315147|ref|YP_003850294.1| - 0.0071 16.4 0.2 0.019 15.0 0.1 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ApbA PF02558.11 gi|304315147|ref|YP_003850294.1| - 0.0078 15.6 0.0 0.037 13.4 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|304315147|ref|YP_003850294.1| - 0.0083 15.9 3.3 0.11 12.3 0.6 3.0 2 1 1 3 3 3 1 ThiF family 3HCDH_N PF02737.13 gi|304315147|ref|YP_003850294.1| - 0.015 14.9 2.4 0.052 13.1 0.0 2.5 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|304315147|ref|YP_003850294.1| - 0.019 14.7 0.2 0.047 13.4 0.1 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|304315147|ref|YP_003850294.1| - 0.021 14.2 0.0 0.04 13.2 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain adh_short PF00106.20 gi|304315147|ref|YP_003850294.1| - 0.025 14.5 1.1 0.072 13.0 0.2 2.2 2 0 0 2 2 2 0 short chain dehydrogenase Oxidored_nitro PF00148.14 gi|304315147|ref|YP_003850294.1| - 0.049 12.2 0.0 0.16 10.5 0.0 1.7 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Pyr_redox_2 PF07992.9 gi|304315147|ref|YP_003850294.1| - 0.063 13.1 0.2 0.16 11.8 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF1188 PF06690.6 gi|304315147|ref|YP_003850294.1| - 0.09 11.9 0.0 0.19 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_7 PF13241.1 gi|304315148|ref|YP_003850295.1| - 1.5e-26 92.6 0.1 6.3e-26 90.6 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|304315148|ref|YP_003850295.1| - 7.9e-06 25.1 0.1 1.7e-05 24.0 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|304315148|ref|YP_003850295.1| - 1.4e-05 24.5 0.5 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain THF_DHG_CYH_C PF02882.14 gi|304315148|ref|YP_003850295.1| - 0.00061 18.9 0.0 0.0012 17.9 0.0 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ELFV_dehydrog PF00208.16 gi|304315148|ref|YP_003850295.1| - 0.0031 17.1 0.0 0.0053 16.3 0.0 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Rossmann-like PF10727.4 gi|304315148|ref|YP_003850295.1| - 0.0083 15.8 0.5 0.063 12.9 0.1 2.3 2 1 0 2 2 2 1 Rossmann-like domain 3HCDH_N PF02737.13 gi|304315148|ref|YP_003850295.1| - 0.0097 15.5 0.2 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|304315148|ref|YP_003850295.1| - 0.011 15.8 2.0 0.049 13.7 0.4 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|304315148|ref|YP_003850295.1| - 0.022 14.6 0.5 0.065 13.0 0.1 2.0 2 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|304315148|ref|YP_003850295.1| - 0.025 14.5 1.3 0.84 9.6 0.3 2.5 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|304315148|ref|YP_003850295.1| - 0.027 14.4 0.1 0.035 14.0 0.1 1.2 1 0 0 1 1 1 0 NADH(P)-binding ThiF PF00899.16 gi|304315148|ref|YP_003850295.1| - 0.036 13.8 3.5 8.4 6.2 0.2 3.2 2 2 2 4 4 4 0 ThiF family F420_oxidored PF03807.12 gi|304315148|ref|YP_003850295.1| - 0.038 14.4 0.7 0.19 12.1 0.4 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh PF00389.25 gi|304315148|ref|YP_003850295.1| - 0.05 13.0 0.1 0.53 9.7 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|304315148|ref|YP_003850295.1| - 0.092 12.1 1.7 2.2 7.6 0.1 2.9 2 2 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2536 PF10750.4 gi|304315148|ref|YP_003850295.1| - 0.12 12.0 0.2 0.28 10.7 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2536) GFO_IDH_MocA PF01408.17 gi|304315148|ref|YP_003850295.1| - 0.15 12.5 0.2 0.19 12.2 0.1 1.4 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UBA PF00627.26 gi|304315149|ref|YP_003850296.1| - 0.0037 17.0 0.1 0.0075 16.0 0.1 1.6 1 0 0 1 1 1 1 UBA/TS-N domain FliJ PF02050.11 gi|304315149|ref|YP_003850296.1| - 0.025 14.6 0.0 0.031 14.3 0.0 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein HTH_3 PF01381.17 gi|304315149|ref|YP_003850296.1| - 0.041 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.16 gi|304315149|ref|YP_003850296.1| - 0.13 11.6 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family ABC_tran PF00005.22 gi|304315150|ref|YP_003850297.1| - 2.4e-52 176.8 0.0 5.2e-25 88.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|304315150|ref|YP_003850297.1| - 5.8e-11 42.8 1.5 0.029 14.3 0.0 4.1 3 1 0 4 4 4 3 AAA domain DUF258 PF03193.11 gi|304315150|ref|YP_003850297.1| - 6.4e-07 28.6 0.3 0.00099 18.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|304315150|ref|YP_003850297.1| - 1.2e-06 27.8 0.1 0.0013 17.9 0.0 3.3 3 0 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.14 gi|304315150|ref|YP_003850297.1| - 2.2e-06 27.0 1.7 0.12 11.5 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|304315150|ref|YP_003850297.1| - 4.9e-05 23.1 0.0 0.073 12.9 0.0 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|304315150|ref|YP_003850297.1| - 0.00026 20.4 0.4 0.14 11.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|304315150|ref|YP_003850297.1| - 0.00065 19.8 1.0 0.57 10.3 0.0 3.2 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|304315150|ref|YP_003850297.1| - 0.00079 19.1 0.4 0.092 12.4 0.1 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|304315150|ref|YP_003850297.1| - 0.0013 18.6 3.2 0.13 12.2 0.1 3.1 3 0 0 3 3 2 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|304315150|ref|YP_003850297.1| - 0.0019 17.0 0.6 0.053 12.3 0.0 2.3 2 0 0 2 2 2 1 ArgK protein AAA_33 PF13671.1 gi|304315150|ref|YP_003850297.1| - 0.0036 17.1 0.1 0.42 10.4 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|304315150|ref|YP_003850297.1| - 0.0046 16.4 2.4 1.1 8.5 0.1 3.1 3 0 0 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|304315150|ref|YP_003850297.1| - 0.015 15.3 4.1 3.3 7.6 0.4 3.1 3 1 0 3 3 3 0 AAA ATPase domain AAA_30 PF13604.1 gi|304315150|ref|YP_003850297.1| - 0.018 14.5 0.1 4.9 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|304315150|ref|YP_003850297.1| - 0.018 15.3 1.0 6.4 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|304315150|ref|YP_003850297.1| - 0.019 14.3 0.1 7.1 5.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|304315150|ref|YP_003850297.1| - 0.025 13.4 3.5 1.3 7.8 0.2 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.1 gi|304315150|ref|YP_003850297.1| - 0.027 15.2 6.3 0.19 12.5 0.8 3.2 3 2 0 3 3 2 0 AAA domain cobW PF02492.14 gi|304315150|ref|YP_003850297.1| - 0.035 13.5 1.3 4.2 6.7 0.0 3.0 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|304315150|ref|YP_003850297.1| - 0.038 13.6 0.5 7.4 6.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|304315150|ref|YP_003850297.1| - 0.045 13.2 0.1 8.7 5.7 0.1 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|304315150|ref|YP_003850297.1| - 0.074 12.8 3.2 2.6 7.7 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|304315150|ref|YP_003850297.1| - 0.097 11.7 0.1 4.8 6.2 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_PrkA PF08298.6 gi|304315150|ref|YP_003850297.1| - 0.1 11.2 0.0 0.35 9.4 0.0 1.8 2 0 0 2 2 2 0 PrkA AAA domain Miro PF08477.8 gi|304315150|ref|YP_003850297.1| - 0.11 12.9 0.6 22 5.5 0.0 3.0 3 0 0 3 3 3 0 Miro-like protein AAA_18 PF13238.1 gi|304315150|ref|YP_003850297.1| - 0.15 12.4 0.4 3.8 7.8 0.1 2.6 2 0 0 2 2 2 0 AAA domain IIGP PF05049.8 gi|304315150|ref|YP_003850297.1| - 0.17 10.7 0.1 0.36 9.6 0.0 1.5 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PIF1 PF05970.9 gi|304315150|ref|YP_003850297.1| - 0.17 10.7 0.2 16 4.2 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Dus PF01207.12 gi|304315151|ref|YP_003850298.1| - 6.2e-15 54.8 0.0 8.7e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|304315151|ref|YP_003850298.1| - 0.00058 19.1 0.1 0.0015 17.8 0.1 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|304315151|ref|YP_003850298.1| - 0.008 15.4 0.1 0.068 12.4 0.0 2.0 2 0 0 2 2 2 1 PcrB family IMPDH PF00478.20 gi|304315151|ref|YP_003850298.1| - 0.012 14.5 0.3 0.019 13.8 0.1 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Chorion_1 PF01723.11 gi|304315151|ref|YP_003850298.1| - 0.045 13.6 0.1 0.096 12.5 0.1 1.5 1 0 0 1 1 1 0 Chorion protein PEP-utilisers_N PF05524.8 gi|304315151|ref|YP_003850298.1| - 0.072 12.8 0.1 0.22 11.3 0.0 2.0 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal GGDN PF05165.7 gi|304315152|ref|YP_003850299.1| - 9.4e-128 424.4 0.1 1.1e-127 424.1 0.0 1.0 1 0 0 1 1 1 1 GGDN family UPF0052 PF01933.13 gi|304315153|ref|YP_003850300.1| - 2.2e-52 178.2 0.0 3.2e-52 177.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 F420_ligase PF01996.11 gi|304315154|ref|YP_003850301.1| - 3.9e-77 258.3 0.6 4.5e-77 258.1 0.4 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase IMP_cyclohyd PF07826.6 gi|304315155|ref|YP_003850302.1| - 6.1e-79 264.0 0.0 6.8e-79 263.8 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein ExbD PF02472.11 gi|304315156|ref|YP_003850303.1| - 2.5e-06 27.5 0.9 4.2e-06 26.7 0.6 1.5 1 1 0 1 1 1 1 Biopolymer transport protein ExbD/TolR MotA_ExbB PF01618.11 gi|304315157|ref|YP_003850304.1| - 4.4e-35 120.3 0.7 4.4e-35 120.3 0.5 1.7 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family RNase_HII PF01351.13 gi|304315158|ref|YP_003850305.1| - 3e-65 219.5 0.0 3.4e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII MreB_Mbl PF06723.8 gi|304315159|ref|YP_003850306.1| - 8.6e-106 353.2 19.4 9.8e-106 353.0 13.4 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.15 gi|304315159|ref|YP_003850306.1| - 1.6e-17 62.7 8.1 1.1e-15 56.5 4.0 2.0 1 1 0 2 2 2 2 Hsp70 protein Actin PF00022.14 gi|304315159|ref|YP_003850306.1| - 1.2e-12 47.0 0.4 1.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 Actin FtsA PF14450.1 gi|304315159|ref|YP_003850306.1| - 2.9e-06 27.0 6.0 2.9e-06 27.0 4.2 3.3 2 2 0 2 2 2 1 Cell division protein FtsA PilM_2 PF11104.3 gi|304315159|ref|YP_003850306.1| - 0.00038 19.4 0.0 0.00063 18.7 0.0 1.3 1 0 0 1 1 1 1 Type IV pilus assembly protein PilM; EutA PF06277.6 gi|304315159|ref|YP_003850306.1| - 0.0064 15.1 5.2 0.0097 14.5 3.6 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA Hydantoinase_A PF01968.13 gi|304315159|ref|YP_003850306.1| - 3.3 6.7 9.7 4.9 6.1 2.7 2.3 1 1 1 2 2 2 0 Hydantoinase/oxoprolinase PS_Dcarbxylase PF02666.10 gi|304315161|ref|YP_003850308.1| - 7.1e-40 136.4 0.1 8.7e-40 136.1 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.17 gi|304315161|ref|YP_003850308.1| - 0.064 13.3 0.2 0.19 11.8 0.1 1.8 2 0 0 2 2 2 0 Peptidase family M23 CDP-OH_P_transf PF01066.16 gi|304315162|ref|YP_003850309.1| - 6.9e-09 35.9 16.3 1.1e-07 32.0 11.2 2.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase COPI_assoc PF08507.5 gi|304315162|ref|YP_003850309.1| - 0.67 9.6 17.5 0.33 10.6 3.0 3.7 3 1 0 3 3 3 0 COPI associated protein DUF4260 PF14079.1 gi|304315162|ref|YP_003850309.1| - 9.1 6.1 9.5 2 8.2 4.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) DUF515 PF04415.7 gi|304315163|ref|YP_003850310.1| - 4.2e-118 394.2 6.4 7.3e-71 238.5 4.3 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF515) DUF4366 PF14283.1 gi|304315163|ref|YP_003850310.1| - 0.02 14.3 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Sortase PF04203.8 gi|304315165|ref|YP_003850312.1| - 7.5e-19 67.5 0.0 9.6e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Sortase family DUF4131 PF13567.1 gi|304315165|ref|YP_003850312.1| - 0.047 13.1 4.0 0.053 12.9 0.5 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF381 PF04038.7 gi|304315166|ref|YP_003850313.1| - 1.5e-23 82.5 0.2 2.1e-23 82.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|304315166|ref|YP_003850313.1| - 8.8e-21 73.0 0.3 1.4e-20 72.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Fer4 PF00037.22 gi|304315167|ref|YP_003850314.1| - 3.5e-13 48.5 13.9 3.5e-07 29.5 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315167|ref|YP_003850314.1| - 6.4e-10 38.6 24.0 3.2e-07 30.0 8.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304315167|ref|YP_003850314.1| - 2.2e-09 37.5 7.7 2.9e-09 37.1 5.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315167|ref|YP_003850314.1| - 2.6e-09 36.4 13.3 0.00017 21.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315167|ref|YP_003850314.1| - 7.7e-09 35.0 12.5 0.00015 21.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315167|ref|YP_003850314.1| - 2e-08 33.9 12.8 7e-07 29.0 8.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315167|ref|YP_003850314.1| - 8.7e-08 32.3 10.2 1.4e-07 31.6 7.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315167|ref|YP_003850314.1| - 5e-06 26.4 11.8 0.0083 16.3 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315167|ref|YP_003850314.1| - 1.5e-05 25.6 11.2 0.0026 18.4 8.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|304315167|ref|YP_003850314.1| - 4.5e-05 23.7 12.0 0.0026 18.0 0.9 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|304315167|ref|YP_003850314.1| - 5.8e-05 23.0 11.0 0.0062 16.5 1.7 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315167|ref|YP_003850314.1| - 0.00013 22.4 12.6 0.0019 18.7 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304315167|ref|YP_003850314.1| - 0.00017 21.8 11.1 0.019 15.3 8.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315167|ref|YP_003850314.1| - 0.0023 18.2 13.4 0.095 13.1 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain C1_1 PF00130.17 gi|304315167|ref|YP_003850314.1| - 0.013 15.2 3.0 1.6 8.5 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fer4_3 PF12798.2 gi|304315167|ref|YP_003850314.1| - 0.015 15.8 15.9 0.42 11.2 2.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304315167|ref|YP_003850314.1| - 0.28 11.0 5.2 2 8.3 3.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.14 gi|304315168|ref|YP_003850315.1| - 8.8e-83 277.3 0.0 1.1e-82 277.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|304315168|ref|YP_003850315.1| - 4.2e-08 33.1 0.2 9.9e-08 31.9 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|304315168|ref|YP_003850315.1| - 6.9e-05 22.4 0.2 0.00012 21.6 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|304315169|ref|YP_003850316.1| - 4.2e-34 117.3 0.0 6.8e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.13 gi|304315170|ref|YP_003850317.1| - 5.1e-39 133.9 0.9 6e-39 133.7 0.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TrmE_N PF10396.4 gi|304315170|ref|YP_003850317.1| - 0.018 14.9 0.1 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus ATP-grasp_2 PF08442.5 gi|304315171|ref|YP_003850318.1| - 3.2e-68 229.0 0.0 4.9e-68 228.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|304315171|ref|YP_003850318.1| - 2.8e-18 65.9 0.2 4.5e-18 65.3 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|304315171|ref|YP_003850318.1| - 4.8e-13 48.8 2.8 1.5e-11 43.9 0.7 3.1 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.14 gi|304315171|ref|YP_003850318.1| - 9.2e-07 28.6 0.1 1.4e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.12 gi|304315171|ref|YP_003850318.1| - 6e-05 22.4 0.5 0.00012 21.4 0.2 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|304315171|ref|YP_003850318.1| - 7.3e-05 22.5 0.1 0.00014 21.6 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|304315171|ref|YP_003850318.1| - 0.0031 16.8 0.0 0.0051 16.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Hydrolase PF00702.21 gi|304315171|ref|YP_003850318.1| - 0.036 14.4 0.1 0.052 13.9 0.1 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase CO_dh PF02552.11 gi|304315172|ref|YP_003850319.1| - 2.8e-36 124.6 0.0 3.3e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DUF3524 PF12038.3 gi|304315172|ref|YP_003850319.1| - 0.15 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3524) Prismane PF03063.15 gi|304315173|ref|YP_003850320.1| - 2.2e-52 178.1 8.8 1.4e-38 132.6 0.2 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Prismane PF03063.15 gi|304315174|ref|YP_003850321.1| - 7.4e-31 107.0 0.7 8.1e-31 106.9 0.5 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|304315174|ref|YP_003850321.1| - 3.8e-09 36.1 15.1 0.0002 21.1 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315174|ref|YP_003850321.1| - 8.9e-09 35.2 7.2 8.9e-09 35.2 5.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304315174|ref|YP_003850321.1| - 8.6e-07 29.2 20.1 1.1e-06 28.8 7.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315174|ref|YP_003850321.1| - 2.1e-06 27.8 22.8 1.8e-05 24.9 8.1 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315174|ref|YP_003850321.1| - 2.4e-06 27.8 20.2 0.00041 20.7 0.8 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304315174|ref|YP_003850321.1| - 5.5e-06 25.7 3.9 5.5e-06 25.7 2.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304315174|ref|YP_003850321.1| - 2.6e-05 24.4 17.0 0.0053 17.0 0.1 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315174|ref|YP_003850321.1| - 5.4e-05 22.8 20.5 0.004 16.9 2.2 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315174|ref|YP_003850321.1| - 0.0001 21.9 3.7 0.0001 21.9 2.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315174|ref|YP_003850321.1| - 0.00054 19.7 19.5 0.0038 17.0 7.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315174|ref|YP_003850321.1| - 0.0088 16.5 7.0 0.0088 16.5 4.9 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304315174|ref|YP_003850321.1| - 0.024 14.9 3.7 0.024 14.9 2.5 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315174|ref|YP_003850321.1| - 0.053 14.2 11.7 0.053 14.2 8.1 3.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|304315176|ref|YP_003850323.1| - 7.8e-14 50.6 34.7 1.5e-07 30.7 5.8 5.9 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304315176|ref|YP_003850323.1| - 1.7e-11 43.8 11.4 1.7e-11 43.8 7.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304315176|ref|YP_003850323.1| - 2e-10 40.9 29.9 7.1e-06 26.3 9.2 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315176|ref|YP_003850323.1| - 3.5e-10 39.1 34.4 2.2e-07 30.3 2.5 4.7 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315176|ref|YP_003850323.1| - 4e-09 35.9 39.6 5.2e-07 29.2 4.3 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315176|ref|YP_003850323.1| - 2.5e-08 33.5 31.2 0.00019 21.1 8.9 2.8 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315176|ref|YP_003850323.1| - 8e-08 32.4 30.9 0.0003 20.9 9.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315176|ref|YP_003850323.1| - 8.5e-06 25.9 44.2 0.021 15.3 2.0 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315176|ref|YP_003850323.1| - 4.4e-05 23.2 12.1 4.4e-05 23.2 8.4 3.7 2 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315176|ref|YP_003850323.1| - 0.0002 21.4 36.0 0.0067 16.6 3.4 5.0 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315176|ref|YP_003850323.1| - 0.00079 20.1 30.2 0.34 11.6 5.2 4.4 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|304315176|ref|YP_003850323.1| - 0.047 14.0 18.5 0.73 10.2 0.2 3.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304315176|ref|YP_003850323.1| - 0.061 13.6 33.2 0.11 12.8 3.0 4.4 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315176|ref|YP_003850323.1| - 0.63 10.6 27.0 1.5 9.4 2.6 3.4 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|304315176|ref|YP_003850323.1| - 1.1 9.3 32.5 3.9 7.5 8.9 4.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315176|ref|YP_003850323.1| - 9.2 6.7 34.9 0.19 12.1 3.4 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain DUF2243 PF10002.4 gi|304315177|ref|YP_003850324.1| - 0.0085 15.8 6.3 0.015 15.0 1.7 2.9 2 1 0 2 2 2 1 Predicted membrane protein (DUF2243) DUF1002 PF06207.6 gi|304315178|ref|YP_003850325.1| - 2.7e-59 200.2 9.1 3.2e-59 199.9 6.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) SpoVIF PF14069.1 gi|304315178|ref|YP_003850325.1| - 0.0014 18.2 3.2 0.0033 17.1 2.2 1.6 1 0 0 1 1 1 1 Stage VI sporulation protein F FliL PF03748.9 gi|304315178|ref|YP_003850325.1| - 0.0068 16.3 1.9 0.34 10.9 0.0 2.8 3 0 0 3 3 3 1 Flagellar basal body-associated protein FliL DUF2624 PF11116.3 gi|304315178|ref|YP_003850325.1| - 0.36 11.3 5.0 0.26 11.8 0.5 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2624) Wyosine_form PF08608.7 gi|304315179|ref|YP_003850326.1| - 1.2e-22 79.7 0.1 7.3e-22 77.2 0.0 2.1 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|304315179|ref|YP_003850326.1| - 7.1e-15 55.5 0.0 6.9e-14 52.3 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|304315179|ref|YP_003850326.1| - 0.0058 16.6 0.1 0.022 14.7 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|304315179|ref|YP_003850326.1| - 0.032 14.4 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Transglut_core PF01841.14 gi|304315180|ref|YP_003850327.1| - 4.4e-06 26.8 0.4 4.4e-06 26.8 0.3 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily FliL PF03748.9 gi|304315180|ref|YP_003850327.1| - 0.017 15.1 0.0 0.029 14.3 0.0 1.4 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL TIM PF00121.13 gi|304315181|ref|YP_003850328.1| - 1e-31 109.8 0.3 8.6e-30 103.5 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|304315181|ref|YP_003850328.1| - 1.3e-05 24.5 5.6 1.6e-05 24.2 0.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|304315181|ref|YP_003850328.1| - 0.00089 18.4 5.2 0.0015 17.6 0.2 2.4 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|304315181|ref|YP_003850328.1| - 0.0022 16.8 0.2 0.0043 15.9 0.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|304315181|ref|YP_003850328.1| - 0.0028 16.7 0.0 0.0058 15.7 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|304315181|ref|YP_003850328.1| - 0.03 13.5 0.1 0.14 11.4 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein DFP PF04127.10 gi|304315181|ref|YP_003850328.1| - 0.062 12.9 2.2 0.3 10.6 0.4 2.2 1 1 1 2 2 2 0 DNA / pantothenate metabolism flavoprotein Glu_synthase PF01645.12 gi|304315181|ref|YP_003850328.1| - 0.094 11.6 3.6 0.061 12.2 0.4 2.1 1 1 1 2 2 2 0 Conserved region in glutamate synthase PGK PF00162.14 gi|304315182|ref|YP_003850329.1| - 9.1e-127 422.7 0.0 1e-126 422.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase RNA_pol_Rpb5_C PF01191.14 gi|304315183|ref|YP_003850330.1| - 1.2e-31 108.1 0.9 1.3e-31 107.9 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|304315184|ref|YP_003850331.1| - 1.1e-59 200.8 0.1 1.3e-59 200.5 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|304315184|ref|YP_003850331.1| - 3.9e-25 88.3 1.3 7.3e-25 87.4 0.9 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|304315184|ref|YP_003850331.1| - 4e-25 87.3 0.0 7.8e-25 86.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|304315185|ref|YP_003850332.1| - 2.9e-131 437.7 0.0 3.5e-131 437.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|304315185|ref|YP_003850332.1| - 2.7e-29 101.2 0.5 3e-28 97.8 0.0 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|304315185|ref|YP_003850332.1| - 1.5e-27 95.1 0.1 3.2e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|304315185|ref|YP_003850332.1| - 2.2e-18 65.9 3.5 7e-18 64.3 2.4 2.0 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.4 gi|304315185|ref|YP_003850332.1| - 0.013 15.2 0.8 0.11 12.3 0.3 2.5 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.7 gi|304315186|ref|YP_003850333.1| - 4.1e-96 322.1 33.9 5.8e-58 196.7 1.0 3.2 1 1 2 3 3 3 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|304315186|ref|YP_003850333.1| - 1.5e-68 229.9 0.0 1.5e-68 229.9 0.0 3.2 2 1 2 4 4 3 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|304315186|ref|YP_003850333.1| - 2.9e-36 124.5 7.3 1.5e-35 122.2 0.0 3.3 2 1 0 2 2 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|304315186|ref|YP_003850333.1| - 3.1e-33 113.7 0.0 3.1e-33 113.7 0.0 4.6 2 1 0 3 3 2 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|304315186|ref|YP_003850333.1| - 2.9e-27 95.6 0.0 2.9e-27 95.6 0.0 2.7 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 5 DUF2316 PF10078.4 gi|304315186|ref|YP_003850333.1| - 0.00037 20.4 16.7 0.00074 19.4 2.2 4.0 2 1 2 4 4 4 2 Uncharacterized protein conserved in bacteria (DUF2316) Mor PF08765.6 gi|304315186|ref|YP_003850333.1| - 0.00051 19.7 1.8 9.7 6.0 0.0 4.3 3 0 0 3 3 3 0 Mor transcription activator family RFC1 PF08519.7 gi|304315186|ref|YP_003850333.1| - 0.0063 16.2 24.7 0.037 13.8 2.9 4.7 2 1 2 4 4 4 2 Replication factor RFC1 C terminal domain HTH_37 PF13744.1 gi|304315186|ref|YP_003850333.1| - 0.014 15.1 13.4 0.65 9.8 0.9 5.3 3 1 2 5 5 5 0 Helix-turn-helix domain DUF3659 PF12396.3 gi|304315186|ref|YP_003850333.1| - 0.021 14.5 0.2 0.021 14.5 0.2 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF3659) TMP_2 PF06791.8 gi|304315186|ref|YP_003850333.1| - 0.052 13.1 1.9 0.72 9.4 0.0 2.6 1 1 1 3 3 3 0 Prophage tail length tape measure protein DUF3670 PF12419.3 gi|304315186|ref|YP_003850333.1| - 0.14 11.6 1.1 0.78 9.1 0.0 2.7 2 1 0 2 2 2 0 SNF2 Helicase protein DUF2802 PF10975.3 gi|304315186|ref|YP_003850333.1| - 0.16 11.7 4.1 27 4.5 0.0 4.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) DUF3650 PF12368.3 gi|304315186|ref|YP_003850333.1| - 0.43 10.1 12.0 22 4.6 0.1 5.8 7 0 0 7 7 7 0 Protein of unknown function (DUF3650) HTH_DeoR PF08220.7 gi|304315186|ref|YP_003850333.1| - 4.8 6.8 7.1 0.75 9.3 0.2 3.2 4 0 0 4 4 3 0 DeoR-like helix-turn-helix domain Rpr2 PF04032.11 gi|304315186|ref|YP_003850333.1| - 5 7.0 6.9 1.6 8.6 0.1 3.4 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain RNA_pol_Rpb1_5 PF04998.12 gi|304315187|ref|YP_003850334.1| - 1.9e-54 184.8 1.2 2.9e-54 184.2 0.8 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 ATP-synt_D PF01813.12 gi|304315187|ref|YP_003850334.1| - 0.00084 18.9 0.7 0.0022 17.5 0.1 2.0 2 0 0 2 2 2 1 ATP synthase subunit D NAC PF01849.13 gi|304315187|ref|YP_003850334.1| - 0.034 13.6 0.3 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 NAC domain Histone_HNS PF00816.16 gi|304315187|ref|YP_003850334.1| - 0.081 13.4 5.7 0.48 10.9 0.4 3.2 3 0 0 3 3 3 0 H-NS histone family Ribosomal_L7Ae PF01248.21 gi|304315188|ref|YP_003850335.1| - 4.6e-21 74.1 0.0 5e-21 74.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|304315189|ref|YP_003850336.1| - 1.3e-20 72.7 6.9 3.7e-15 55.2 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|304315189|ref|YP_003850336.1| - 2.6e-14 52.7 2.9 5.9e-14 51.6 0.2 2.4 1 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|304315189|ref|YP_003850336.1| - 7.6e-07 28.6 1.2 0.002 17.6 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|304315189|ref|YP_003850336.1| - 0.002 17.7 6.8 0.23 11.1 1.2 3.2 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|304315189|ref|YP_003850336.1| - 0.063 12.9 3.8 3.3 7.4 0.0 3.1 3 0 0 3 3 3 0 KH domain Cu_amine_oxidN1 PF07833.6 gi|304315189|ref|YP_003850336.1| - 0.14 12.4 0.2 1.4 9.3 0.2 2.0 1 1 1 2 2 2 0 Copper amine oxidase N-terminal domain PRC PF05239.11 gi|304315189|ref|YP_003850336.1| - 0.16 11.8 1.0 1 9.2 0.3 2.3 2 0 0 2 2 2 0 PRC-barrel domain Ribosom_S12_S23 PF00164.20 gi|304315190|ref|YP_003850337.1| - 4.7e-41 139.0 0.5 5.4e-41 138.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|304315191|ref|YP_003850338.1| - 5.4e-45 152.6 6.8 6.1e-45 152.4 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|304315192|ref|YP_003850339.1| - 6.8e-62 208.2 0.1 1.2e-61 207.4 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|304315192|ref|YP_003850339.1| - 3.1e-29 100.9 0.2 8.6e-29 99.5 0.1 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|304315192|ref|YP_003850339.1| - 9.9e-24 82.9 0.4 2.2e-23 81.8 0.3 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|304315192|ref|YP_003850339.1| - 2.5e-23 81.7 0.1 1.1e-22 79.6 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|304315192|ref|YP_003850339.1| - 6.8e-14 51.7 1.7 2.5e-13 49.9 1.2 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|304315192|ref|YP_003850339.1| - 0.0018 18.2 0.0 0.004 17.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2042 PF09743.4 gi|304315192|ref|YP_003850339.1| - 0.059 12.6 0.1 0.49 9.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) GTP_EFTU PF00009.22 gi|304315193|ref|YP_003850340.1| - 2e-61 206.6 0.2 2.9e-61 206.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|304315193|ref|YP_003850340.1| - 1.6e-31 108.3 0.6 5.2e-31 106.7 0.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|304315193|ref|YP_003850340.1| - 1.5e-18 66.6 1.7 3.4e-18 65.5 1.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|304315193|ref|YP_003850340.1| - 9.8e-08 31.9 0.0 2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|304315193|ref|YP_003850340.1| - 4e-05 23.1 0.8 4e-05 23.1 0.6 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|304315193|ref|YP_003850340.1| - 0.00054 19.1 0.0 0.0046 16.1 0.0 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|304315193|ref|YP_003850340.1| - 0.00099 18.4 0.9 0.013 14.7 0.2 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|304315193|ref|YP_003850340.1| - 0.00099 19.5 0.0 0.0026 18.2 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|304315193|ref|YP_003850340.1| - 0.0012 18.0 0.2 0.0041 16.3 0.1 1.9 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|304315193|ref|YP_003850340.1| - 0.0028 16.7 0.0 0.0047 15.9 0.0 1.3 1 0 0 1 1 1 1 Septin Dynamin_N PF00350.18 gi|304315193|ref|YP_003850340.1| - 0.046 13.5 0.1 3.7 7.3 0.0 2.5 1 1 1 2 2 2 0 Dynamin family G-alpha PF00503.15 gi|304315193|ref|YP_003850340.1| - 0.16 10.6 0.0 12 4.4 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit Ribosomal_S10 PF00338.17 gi|304315194|ref|YP_003850341.1| - 1.5e-29 101.6 0.0 1.7e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e MtrA PF04208.9 gi|304315195|ref|YP_003850342.1| - 2e-83 278.1 0.4 2.2e-83 278.0 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A TetR_N PF00440.18 gi|304315196|ref|YP_003850343.1| - 1.1e-19 69.7 0.7 2e-19 68.9 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|304315196|ref|YP_003850343.1| - 0.0031 18.0 0.0 0.0062 17.0 0.0 1.5 1 0 0 1 1 1 1 WHG domain NYN PF01936.13 gi|304315197|ref|YP_003850344.1| - 4.5e-18 65.9 0.0 5.6e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|304315197|ref|YP_003850344.1| - 0.023 14.2 0.1 2.7 7.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF460) Usp PF00582.21 gi|304315198|ref|YP_003850345.1| - 1.1e-31 109.8 0.1 1.3e-31 109.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|304315198|ref|YP_003850345.1| - 0.011 16.2 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase PAS_5 PF07310.8 gi|304315198|ref|YP_003850345.1| - 0.014 14.9 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 PAS domain Ribosomal_L3 PF00297.17 gi|304315198|ref|YP_003850345.1| - 0.071 12.5 0.0 0.084 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L3 Cass2 PF14526.1 gi|304315199|ref|YP_003850346.1| - 3.2e-05 23.9 0.1 4e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein GyrI-like PF06445.10 gi|304315199|ref|YP_003850346.1| - 0.00077 19.5 0.2 0.0027 17.7 0.1 1.7 1 1 0 1 1 1 1 GyrI-like small molecule binding domain Sigma70_r1_1 PF03979.9 gi|304315199|ref|YP_003850346.1| - 0.077 12.9 0.8 9.6 6.2 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 SLA_LP_auto_ag PF05889.8 gi|304315200|ref|YP_003850347.1| - 2e-39 135.1 0.0 2.7e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|304315200|ref|YP_003850347.1| - 3.3e-18 65.6 0.0 4.8e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|304315200|ref|YP_003850347.1| - 3.6e-11 42.6 0.0 5.7e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|304315200|ref|YP_003850347.1| - 1.5e-06 27.4 0.3 3.4e-06 26.3 0.2 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|304315200|ref|YP_003850347.1| - 4.6e-06 25.9 0.0 6.7e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|304315200|ref|YP_003850347.1| - 5.6e-05 21.8 0.0 0.00018 20.1 0.0 1.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Pyridoxal_deC PF00282.14 gi|304315200|ref|YP_003850347.1| - 0.013 13.9 0.0 0.019 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Ank_2 PF12796.2 gi|304315200|ref|YP_003850347.1| - 0.014 15.7 0.0 0.027 14.7 0.0 1.5 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) Cys_Met_Meta_PP PF01053.15 gi|304315200|ref|YP_003850347.1| - 0.055 11.7 0.0 0.096 10.9 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme AP_endonuc_2 PF01261.19 gi|304315200|ref|YP_003850347.1| - 0.056 12.7 0.2 0.24 10.6 0.1 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel NTPase_1 PF03266.10 gi|304315201|ref|YP_003850348.1| - 3.7e-54 182.9 0.1 4.1e-54 182.7 0.1 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|304315201|ref|YP_003850348.1| - 5.9e-09 35.4 0.0 7.8e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|304315201|ref|YP_003850348.1| - 9.9e-08 32.8 0.1 2.4e-07 31.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|304315201|ref|YP_003850348.1| - 7.4e-05 22.6 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase AAA_18 PF13238.1 gi|304315201|ref|YP_003850348.1| - 0.00024 21.4 0.5 0.00036 20.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|304315201|ref|YP_003850348.1| - 0.0005 19.7 0.2 0.0017 18.0 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|304315201|ref|YP_003850348.1| - 0.00051 20.1 0.1 0.0025 17.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|304315201|ref|YP_003850348.1| - 0.0006 19.0 0.1 0.0061 15.7 0.1 2.3 2 1 0 2 2 2 1 KaiC ArgK PF03308.11 gi|304315201|ref|YP_003850348.1| - 0.00078 18.3 0.4 0.0018 17.0 0.1 1.8 2 0 0 2 2 2 1 ArgK protein AAA_29 PF13555.1 gi|304315201|ref|YP_003850348.1| - 0.00091 18.7 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|304315201|ref|YP_003850348.1| - 0.00092 19.2 0.7 0.0023 17.9 0.1 1.9 2 1 0 2 2 2 1 AAA ATPase domain KTI12 PF08433.5 gi|304315201|ref|YP_003850348.1| - 0.0017 17.6 0.1 0.0051 16.0 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|304315201|ref|YP_003850348.1| - 0.002 18.0 0.1 0.0032 17.4 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|304315201|ref|YP_003850348.1| - 0.0027 17.6 0.0 0.6 10.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|304315201|ref|YP_003850348.1| - 0.0037 16.9 0.3 0.07 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|304315201|ref|YP_003850348.1| - 0.0044 16.9 0.3 0.014 15.3 0.0 2.0 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|304315201|ref|YP_003850348.1| - 0.0053 15.8 0.1 0.011 14.7 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin MobB PF03205.9 gi|304315201|ref|YP_003850348.1| - 0.007 16.0 0.1 0.049 13.3 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|304315201|ref|YP_003850348.1| - 0.0071 16.0 0.2 0.022 14.3 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|304315201|ref|YP_003850348.1| - 0.0082 15.7 0.0 0.034 13.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|304315201|ref|YP_003850348.1| - 0.011 15.9 0.1 0.044 13.9 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|304315201|ref|YP_003850348.1| - 0.012 15.1 0.1 0.045 13.3 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|304315201|ref|YP_003850348.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.9 gi|304315201|ref|YP_003850348.1| - 0.017 14.1 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_33 PF13671.1 gi|304315201|ref|YP_003850348.1| - 0.021 14.6 0.1 0.033 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|304315201|ref|YP_003850348.1| - 0.022 14.2 0.2 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|304315201|ref|YP_003850348.1| - 0.028 14.7 0.2 0.049 13.9 0.2 1.4 1 0 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.13 gi|304315201|ref|YP_003850348.1| - 0.03 13.8 0.1 0.059 12.8 0.0 1.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|304315201|ref|YP_003850348.1| - 0.035 13.5 0.1 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Mg_chelatase PF01078.16 gi|304315201|ref|YP_003850348.1| - 0.035 13.2 0.0 0.078 12.1 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|304315201|ref|YP_003850348.1| - 0.036 13.0 0.4 5.5 5.9 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Glycos_transf_1 PF00534.15 gi|304315201|ref|YP_003850348.1| - 0.04 13.3 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 G-alpha PF00503.15 gi|304315201|ref|YP_003850348.1| - 0.041 12.5 0.1 0.054 12.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.1 gi|304315201|ref|YP_003850348.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|304315201|ref|YP_003850348.1| - 0.062 13.6 0.0 0.077 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|304315201|ref|YP_003850348.1| - 0.063 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein T2SE PF00437.15 gi|304315201|ref|YP_003850348.1| - 0.064 12.1 0.1 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Thymidylate_kin PF02223.12 gi|304315201|ref|YP_003850348.1| - 0.08 12.3 0.1 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase FtsK_SpoIIIE PF01580.13 gi|304315201|ref|YP_003850348.1| - 0.081 12.3 0.7 0.23 10.9 0.1 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family MCM PF00493.18 gi|304315201|ref|YP_003850348.1| - 0.09 11.5 0.1 0.94 8.2 0.0 2.2 2 1 0 2 2 2 0 MCM2/3/5 family Arch_ATPase PF01637.13 gi|304315201|ref|YP_003850348.1| - 0.098 12.3 0.0 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase DAP3 PF10236.4 gi|304315201|ref|YP_003850348.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.17 gi|304315201|ref|YP_003850348.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 2 0 0 2 2 1 0 RNA helicase Sigma54_activat PF00158.21 gi|304315201|ref|YP_003850348.1| - 0.11 11.9 0.2 1.5 8.2 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain IlvN PF07991.7 gi|304315201|ref|YP_003850348.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain PRK PF00485.13 gi|304315201|ref|YP_003850348.1| - 0.14 11.7 0.1 1.1 8.8 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Radical_SAM PF04055.16 gi|304315202|ref|YP_003850349.1| - 2.3e-13 50.6 0.1 5e-13 49.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304315202|ref|YP_003850349.1| - 2.4e-09 37.4 0.0 3.9e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304315202|ref|YP_003850349.1| - 1.6e-06 28.1 0.0 3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PmbA_TldD PF01523.11 gi|304315203|ref|YP_003850350.1| - 1.4e-69 234.6 0.2 1.7e-69 234.3 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Hydrolase_3 PF08282.7 gi|304315204|ref|YP_003850351.1| - 1.6e-35 122.9 0.2 3.2e-24 85.8 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|304315204|ref|YP_003850351.1| - 5.6e-10 40.0 1.4 0.00017 22.0 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|304315204|ref|YP_003850351.1| - 5.8e-10 38.8 0.0 2e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|304315204|ref|YP_003850351.1| - 2.4e-06 27.8 2.7 4e-05 23.8 0.1 2.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|304315204|ref|YP_003850351.1| - 0.0054 16.6 0.0 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|304315204|ref|YP_003850351.1| - 0.014 15.1 0.6 0.043 13.5 0.0 2.0 2 0 0 2 2 2 0 HAD-hyrolase-like Arch_flagellin PF01917.11 gi|304315204|ref|YP_003850351.1| - 0.026 14.1 0.9 0.047 13.3 0.3 1.6 2 0 0 2 2 2 0 Archaebacterial flagellin HAD_2 PF13419.1 gi|304315204|ref|YP_003850351.1| - 0.043 14.0 0.1 1.6 8.8 0.1 2.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase IMPDH PF00478.20 gi|304315204|ref|YP_003850351.1| - 0.11 11.3 0.8 0.29 9.9 0.6 1.6 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain HypD PF01924.11 gi|304315205|ref|YP_003850352.1| - 8.6e-148 491.8 0.1 9.7e-148 491.6 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family DUF2975 PF11188.3 gi|304315206|ref|YP_003850353.1| - 0.053 13.2 0.1 0.055 13.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Na_Ca_ex PF01699.19 gi|304315207|ref|YP_003850354.1| - 1.6e-31 108.8 22.3 4.7e-29 100.7 10.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Cytochrom_C_asm PF01578.15 gi|304315207|ref|YP_003850354.1| - 1.6 8.2 12.5 0.1 12.0 4.0 2.5 2 1 0 2 2 2 0 Cytochrome C assembly protein DUF11 PF01345.13 gi|304315208|ref|YP_003850355.1| - 1.8e-165 537.3 149.4 2.7e-23 81.8 2.5 12.7 11 1 1 12 12 12 9 Domain of unknown function DUF11 CARDB PF07705.6 gi|304315208|ref|YP_003850355.1| - 2.6e-28 98.0 78.8 5.4e-05 23.1 0.7 11.1 10 1 1 11 11 11 9 CARDB TRAP_beta PF05753.9 gi|304315208|ref|YP_003850355.1| - 3.7e-21 75.1 30.1 0.0015 17.7 0.2 9.6 9 0 0 9 9 9 7 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|304315208|ref|YP_003850355.1| - 9.8e-08 31.9 50.5 0.36 10.9 0.3 13.1 14 1 1 15 15 15 5 NPCBM-associated, NEW3 domain of alpha-galactosidase Chlam_OMP6 PF03504.8 gi|304315208|ref|YP_003850355.1| - 0.0017 18.5 22.9 0.52 10.6 0.0 7.3 9 0 0 9 9 8 3 Chlamydia cysteine-rich outer membrane protein 6 CusF_Ec PF11604.3 gi|304315208|ref|YP_003850355.1| - 0.0025 17.6 0.9 6.4 6.7 0.0 4.2 4 0 0 4 4 4 2 Copper binding periplasmic protein CusF FctA PF12892.2 gi|304315208|ref|YP_003850355.1| - 0.0026 18.5 29.9 18 6.2 0.6 9.1 8 0 0 8 8 8 0 T surface-antigen of pili Integrin_alpha2 PF08441.7 gi|304315208|ref|YP_003850355.1| - 0.014 14.2 9.0 1.6 7.5 0.1 6.2 8 0 0 8 8 8 0 Integrin alpha Rpp20 PF12328.3 gi|304315208|ref|YP_003850355.1| - 0.099 12.2 0.1 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P DUF2393 PF09624.5 gi|304315208|ref|YP_003850355.1| - 0.11 12.0 24.7 14 5.2 0.1 8.8 10 0 0 10 10 10 0 Protein of unknown function (DUF2393) Transglut_C PF00927.17 gi|304315208|ref|YP_003850355.1| - 5.7 7.0 19.8 27 4.8 0.1 8.4 8 1 0 8 8 8 0 Transglutaminase family, C-terminal ig like domain Methyltransf_18 PF12847.2 gi|304315209|ref|YP_003850356.1| - 0.0013 19.3 0.0 0.0022 18.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|304315209|ref|YP_003850356.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304315209|ref|YP_003850356.1| - 0.023 15.1 0.0 0.1 13.1 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain PepSY PF03413.14 gi|304315210|ref|YP_003850357.1| - 0.002 18.6 0.0 0.0044 17.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain HSDR_N PF04313.9 gi|304315214|ref|YP_003850361.1| - 2.2e-17 63.4 1.4 2.2e-17 63.4 1.0 2.1 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|304315214|ref|YP_003850361.1| - 1.7e-13 50.8 0.6 6.3e-13 48.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|304315214|ref|YP_003850361.1| - 3.5e-09 36.3 1.1 1.9e-08 33.9 0.3 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_11 PF13086.1 gi|304315214|ref|YP_003850361.1| - 0.00014 21.4 0.1 0.51 9.8 0.0 2.8 1 1 1 2 2 2 2 AAA domain CCDC155 PF14662.1 gi|304315214|ref|YP_003850361.1| - 2.3 7.7 8.6 0.33 10.5 0.4 2.5 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 UvrD-helicase PF00580.16 gi|304315214|ref|YP_003850361.1| - 3.3 6.9 11.4 6.7 5.9 3.8 3.6 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF3644 PF12358.3 gi|304315215|ref|YP_003850362.1| - 0.00027 21.1 0.0 0.00098 19.3 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3644) Methylase_S PF01420.14 gi|304315216|ref|YP_003850363.1| - 1.9e-46 158.1 3.8 7.3e-31 107.3 3.3 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|304315217|ref|YP_003850364.1| - 3.9e-67 226.5 0.2 8.4e-67 225.4 0.0 1.6 1 1 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|304315217|ref|YP_003850364.1| - 2.5e-22 79.7 3.7 2.5e-22 79.7 2.6 3.5 3 1 1 4 4 4 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|304315217|ref|YP_003850364.1| - 5.5e-09 36.0 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|304315217|ref|YP_003850364.1| - 5.8e-08 32.5 0.2 1.6e-07 31.0 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|304315217|ref|YP_003850364.1| - 1.5e-06 28.4 0.0 2.4e-05 24.6 0.0 2.8 2 0 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|304315217|ref|YP_003850364.1| - 0.0034 16.7 0.0 0.0072 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|304315217|ref|YP_003850364.1| - 0.012 15.1 1.8 0.023 14.2 0.1 2.3 2 0 0 2 2 2 0 Methyltransferase domain Bromodomain PF00439.20 gi|304315217|ref|YP_003850364.1| - 0.016 15.1 2.2 0.028 14.3 0.2 2.5 2 0 0 2 2 2 0 Bromodomain zinc_ribbon_2 PF13240.1 gi|304315218|ref|YP_003850365.1| - 0.0033 16.8 1.3 0.0074 15.7 0.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|304315218|ref|YP_003850365.1| - 0.068 13.1 0.6 7.6 6.5 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF3816 PF12822.2 gi|304315218|ref|YP_003850365.1| - 0.11 12.4 3.0 0.13 12.1 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) zf-TFIIB PF13453.1 gi|304315218|ref|YP_003850365.1| - 0.12 11.6 0.4 0.26 10.4 0.3 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.8 gi|304315218|ref|YP_003850365.1| - 0.15 11.5 0.9 12 5.4 0.1 2.5 2 0 0 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|304315218|ref|YP_003850365.1| - 7.3 6.4 6.7 6.6 6.6 0.6 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain SUI1 PF01253.17 gi|304315219|ref|YP_003850366.1| - 0.05 13.4 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor SUI1 ABC2_membrane PF01061.19 gi|304315220|ref|YP_003850367.1| - 2.5e-40 137.8 25.9 2.5e-40 137.8 17.9 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|304315220|ref|YP_003850367.1| - 1.4e-15 57.2 34.2 1.4e-15 57.2 23.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|304315220|ref|YP_003850367.1| - 2.6e-08 33.3 31.9 3.7e-08 32.8 22.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|304315220|ref|YP_003850367.1| - 5.3e-08 32.0 26.2 8.2e-08 31.4 18.2 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein TMEM125 PF15109.1 gi|304315220|ref|YP_003850367.1| - 0.056 13.5 1.4 0.13 12.3 0.8 1.7 1 1 0 1 1 1 0 TMEM125 protein family ABC_tran PF00005.22 gi|304315221|ref|YP_003850368.1| - 3.1e-28 98.7 0.0 5e-28 98.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304315221|ref|YP_003850368.1| - 1.3e-14 54.8 0.0 1.3e-08 35.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|304315221|ref|YP_003850368.1| - 1.6e-06 28.5 0.1 3.6e-06 27.4 0.0 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|304315221|ref|YP_003850368.1| - 3.9e-06 26.1 0.0 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|304315221|ref|YP_003850368.1| - 4.6e-05 23.8 0.0 8e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|304315221|ref|YP_003850368.1| - 0.0012 18.2 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|304315221|ref|YP_003850368.1| - 0.0026 17.9 0.0 0.041 14.0 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|304315221|ref|YP_003850368.1| - 0.0028 16.9 0.0 0.48 9.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|304315221|ref|YP_003850368.1| - 0.003 17.3 1.1 0.033 13.8 0.1 2.6 2 1 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|304315221|ref|YP_003850368.1| - 0.0039 18.0 1.9 0.018 15.8 1.3 2.3 1 1 0 1 1 1 1 AAA domain DLIC PF05783.6 gi|304315221|ref|YP_003850368.1| - 0.0057 15.3 0.1 0.0099 14.5 0.0 1.3 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_10 PF12846.2 gi|304315221|ref|YP_003850368.1| - 0.011 15.1 0.1 2.2 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|304315221|ref|YP_003850368.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|304315221|ref|YP_003850368.1| - 0.023 14.1 0.0 0.95 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|304315221|ref|YP_003850368.1| - 0.023 14.4 0.1 0.059 13.0 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|304315221|ref|YP_003850368.1| - 0.036 13.5 0.0 0.061 12.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|304315221|ref|YP_003850368.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|304315221|ref|YP_003850368.1| - 0.069 12.2 0.0 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MutS_V PF00488.16 gi|304315221|ref|YP_003850368.1| - 0.075 12.4 0.0 3.8 6.8 0.0 2.4 2 0 0 2 2 2 0 MutS domain V AAA_33 PF13671.1 gi|304315221|ref|YP_003850368.1| - 0.083 12.7 0.0 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|304315221|ref|YP_003850368.1| - 0.098 12.5 0.1 3 7.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain cobW PF02492.14 gi|304315221|ref|YP_003850368.1| - 0.11 11.9 0.1 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|304315221|ref|YP_003850368.1| - 0.16 11.5 0.0 0.86 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|304315222|ref|YP_003850369.1| - 1.3e-101 338.4 0.0 2.1e-60 203.7 0.0 2.0 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|304315222|ref|YP_003850369.1| - 2.5e-28 98.7 0.0 6.4e-17 61.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain RecA PF00154.16 gi|304315222|ref|YP_003850369.1| - 1.6e-10 40.6 0.2 0.0003 19.9 0.0 2.4 2 0 0 2 2 2 2 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|304315222|ref|YP_003850369.1| - 6.5e-09 35.4 0.0 0.00053 19.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|304315222|ref|YP_003850369.1| - 1.2e-08 35.1 0.0 0.0027 17.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|304315222|ref|YP_003850369.1| - 1.4e-08 34.9 0.0 0.00021 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|304315222|ref|YP_003850369.1| - 1.6e-08 34.4 0.0 0.0074 16.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|304315222|ref|YP_003850369.1| - 2.2e-08 33.7 0.0 0.0019 17.9 0.0 2.6 2 0 0 2 2 2 2 Part of AAA domain DUF2075 PF09848.4 gi|304315222|ref|YP_003850369.1| - 5.9e-08 32.0 0.0 0.0022 17.0 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|304315222|ref|YP_003850369.1| - 3.2e-07 30.4 0.0 0.011 15.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain PAXNEB PF05625.6 gi|304315222|ref|YP_003850369.1| - 3.1e-06 26.2 4.0 7.2e-05 21.7 0.2 2.3 2 0 0 2 2 2 1 PAXNEB protein DnaB_C PF03796.10 gi|304315222|ref|YP_003850369.1| - 3.4e-06 26.1 0.0 0.0078 15.1 0.0 2.2 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_17 PF13207.1 gi|304315222|ref|YP_003850369.1| - 4.1e-06 27.5 2.6 0.12 13.2 0.7 2.9 2 1 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.4 gi|304315222|ref|YP_003850369.1| - 5.3e-06 25.2 0.0 0.0011 17.6 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|304315222|ref|YP_003850369.1| - 1.4e-05 24.7 0.0 0.068 12.5 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_18 PF13238.1 gi|304315222|ref|YP_003850369.1| - 2.3e-05 24.6 0.0 0.046 14.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain ResIII PF04851.10 gi|304315222|ref|YP_003850369.1| - 2.9e-05 23.9 0.0 0.013 15.3 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|304315222|ref|YP_003850369.1| - 4.1e-05 23.1 0.0 0.035 13.6 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.24 gi|304315222|ref|YP_003850369.1| - 0.00011 21.8 0.0 0.018 14.5 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|304315222|ref|YP_003850369.1| - 0.00014 20.9 0.0 0.0014 17.5 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|304315222|ref|YP_003850369.1| - 0.00022 20.7 0.3 0.54 9.7 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family GvpD PF07088.6 gi|304315222|ref|YP_003850369.1| - 0.00026 19.4 0.9 0.0033 15.8 0.3 2.7 2 1 1 3 3 3 1 GvpD gas vesicle protein AAA PF00004.24 gi|304315222|ref|YP_003850369.1| - 0.00028 21.1 0.0 0.31 11.2 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.6 gi|304315222|ref|YP_003850369.1| - 0.00046 19.1 0.6 0.56 9.0 0.0 2.2 2 0 0 2 2 2 2 Rad51 AAA_24 PF13479.1 gi|304315222|ref|YP_003850369.1| - 0.00059 19.4 0.1 0.69 9.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|304315222|ref|YP_003850369.1| - 0.00066 19.9 0.0 0.041 14.1 0.0 2.4 2 0 0 2 2 2 1 ABC transporter Arch_ATPase PF01637.13 gi|304315222|ref|YP_003850369.1| - 0.00069 19.3 0.0 0.78 9.3 0.0 2.2 2 0 0 2 2 2 2 Archaeal ATPase AAA_29 PF13555.1 gi|304315222|ref|YP_003850369.1| - 0.0007 19.0 3.3 0.15 11.5 0.4 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|304315222|ref|YP_003850369.1| - 0.0017 18.0 0.0 0.23 11.1 0.0 2.6 2 1 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|304315222|ref|YP_003850369.1| - 0.002 17.7 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD-helicase PF00580.16 gi|304315222|ref|YP_003850369.1| - 0.0036 16.6 0.3 0.4 9.9 0.0 2.2 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain ArgK PF03308.11 gi|304315222|ref|YP_003850369.1| - 0.0053 15.5 0.1 0.056 12.2 0.0 2.3 3 0 0 3 3 3 1 ArgK protein Sigma54_activat PF00158.21 gi|304315222|ref|YP_003850369.1| - 0.0064 15.9 0.2 1.1 8.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain MobB PF03205.9 gi|304315222|ref|YP_003850369.1| - 0.0073 16.0 0.0 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|304315222|ref|YP_003850369.1| - 0.0086 15.5 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|304315222|ref|YP_003850369.1| - 0.01 14.9 0.0 0.17 10.9 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.14 gi|304315222|ref|YP_003850369.1| - 0.011 15.2 0.4 0.17 11.3 0.0 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.1 gi|304315222|ref|YP_003850369.1| - 0.012 15.9 2.1 0.56 10.5 0.3 2.4 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.10 gi|304315222|ref|YP_003850369.1| - 0.013 14.5 0.0 2.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_11 PF13086.1 gi|304315222|ref|YP_003850369.1| - 0.015 14.8 0.0 0.68 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|304315222|ref|YP_003850369.1| - 0.023 14.8 0.0 6.4 6.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Zot PF05707.7 gi|304315222|ref|YP_003850369.1| - 0.028 13.8 0.1 0.61 9.5 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Miro PF08477.8 gi|304315222|ref|YP_003850369.1| - 0.047 14.1 0.0 0.32 11.4 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein Viral_helicase1 PF01443.13 gi|304315222|ref|YP_003850369.1| - 0.054 13.0 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|304315222|ref|YP_003850369.1| - 0.063 12.4 0.8 1.9 7.6 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.9 gi|304315222|ref|YP_003850369.1| - 0.07 12.8 0.1 11 5.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|304315222|ref|YP_003850369.1| - 0.13 11.5 0.0 0.27 10.5 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase TIP49 PF06068.8 gi|304315222|ref|YP_003850369.1| - 0.16 10.6 0.3 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus KaiB PF07689.7 gi|304315223|ref|YP_003850370.1| - 8.5e-16 57.1 0.0 1.1e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin PF00085.15 gi|304315223|ref|YP_003850370.1| - 0.023 14.3 0.0 0.026 14.1 0.0 1.0 1 0 0 1 1 1 0 Thioredoxin MEDS PF14417.1 gi|304315224|ref|YP_003850371.1| - 5.6e-36 123.4 0.0 2.4e-34 118.0 0.0 2.4 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.7 gi|304315224|ref|YP_003850371.1| - 2.2e-28 97.9 2.2 4.1e-28 97.0 1.6 1.5 1 0 0 1 1 1 1 Histidine kinase PAS_4 PF08448.5 gi|304315224|ref|YP_003850371.1| - 2.3e-15 56.5 0.0 1.2e-08 34.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|304315224|ref|YP_003850371.1| - 8.2e-13 48.0 0.0 1.9e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|304315224|ref|YP_003850371.1| - 1.3e-09 37.5 0.0 2.2e-06 27.2 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|304315224|ref|YP_003850371.1| - 7.6e-09 35.3 0.0 2e-06 27.5 0.0 3.4 2 1 1 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|304315224|ref|YP_003850371.1| - 1.3e-08 34.7 0.1 2.4e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|304315224|ref|YP_003850371.1| - 8.8e-05 22.8 0.1 0.00017 21.9 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.1 gi|304315224|ref|YP_003850371.1| - 0.00058 20.2 0.0 0.75 10.1 0.0 3.9 2 1 1 3 3 3 1 PAS domain Rhodanese PF00581.15 gi|304315226|ref|YP_003850373.1| - 1.2e-19 70.6 0.0 3.3e-09 37.0 0.0 2.9 3 0 0 3 3 3 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|304315226|ref|YP_003850373.1| - 4e-13 49.4 2.8 1e-12 48.1 1.9 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Pyridox_ox_2 PF12900.2 gi|304315227|ref|YP_003850374.1| - 7.3e-20 71.2 0.0 8.9e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|304315227|ref|YP_003850374.1| - 2.1e-06 27.6 0.0 2.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1938 PF09153.5 gi|304315227|ref|YP_003850374.1| - 0.026 14.3 0.1 0.052 13.3 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1938) UbiA PF01040.13 gi|304315228|ref|YP_003850375.1| - 1.2e-40 139.3 18.1 1.6e-40 138.9 12.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Gate PF07670.9 gi|304315228|ref|YP_003850375.1| - 0.91 9.4 12.4 0.78 9.6 4.9 2.7 2 2 1 3 3 3 0 Nucleoside recognition CTP_transf_1 PF01148.15 gi|304315229|ref|YP_003850376.1| - 5.3e-13 49.2 11.1 1.7e-10 41.0 2.3 2.2 1 1 1 2 2 2 2 Cytidylyltransferase family Thymidylate_kin PF02223.12 gi|304315230|ref|YP_003850377.1| - 1.9e-38 131.7 0.0 2.2e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|304315230|ref|YP_003850377.1| - 2.2e-05 24.7 0.1 0.0015 18.8 0.0 2.7 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|304315230|ref|YP_003850377.1| - 0.0096 15.7 0.1 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|304315230|ref|YP_003850377.1| - 0.011 16.5 0.9 0.053 14.3 0.6 2.2 1 1 0 1 1 1 0 AAA domain PPK2 PF03976.9 gi|304315230|ref|YP_003850377.1| - 0.057 12.7 0.2 4.2 6.5 0.0 2.4 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Lactamase_B PF00753.22 gi|304315231|ref|YP_003850378.1| - 1.5e-11 44.3 0.2 1.9e-11 43.9 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|304315231|ref|YP_003850378.1| - 9e-06 25.3 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AGT PF11440.3 gi|304315231|ref|YP_003850378.1| - 0.063 12.1 0.0 0.089 11.6 0.0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase Lactamase_B_3 PF13483.1 gi|304315231|ref|YP_003850378.1| - 0.088 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PigN PF04987.9 gi|304315232|ref|YP_003850379.1| - 0.0046 15.6 2.1 0.0066 15.1 1.4 1.1 1 0 0 1 1 1 1 Phosphatidylinositolglycan class N (PIG-N) DUF202 PF02656.10 gi|304315232|ref|YP_003850379.1| - 1.8 8.8 4.9 24 5.2 3.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) NAD_binding_5 PF07994.7 gi|304315233|ref|YP_003850380.1| - 3e-61 207.4 0.0 8.1e-61 206.0 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|304315233|ref|YP_003850380.1| - 2.2e-34 117.6 0.0 3.2e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Fer4 PF00037.22 gi|304315234|ref|YP_003850381.1| - 1.1e-12 46.9 22.3 2.2e-07 30.1 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315234|ref|YP_003850381.1| - 4.9e-10 39.6 30.9 1.4e-06 28.5 13.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315234|ref|YP_003850381.1| - 2.8e-09 36.3 14.2 4.3e-05 23.1 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315234|ref|YP_003850381.1| - 3.2e-09 36.4 28.9 2.5e-08 33.6 9.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315234|ref|YP_003850381.1| - 2e-08 33.7 20.2 3e-06 26.8 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304315234|ref|YP_003850381.1| - 9.1e-08 31.8 18.0 0.00016 21.7 2.7 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|304315234|ref|YP_003850381.1| - 2.9e-07 30.6 16.9 4.9e-07 29.9 11.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315234|ref|YP_003850381.1| - 7.9e-07 29.0 11.6 0.001 19.0 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315234|ref|YP_003850381.1| - 2.4e-06 28.1 13.0 0.003 18.2 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|304315234|ref|YP_003850381.1| - 5.8e-06 26.0 19.8 4e-05 23.3 13.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304315234|ref|YP_003850381.1| - 1.5e-05 25.2 11.4 0.0074 16.6 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315234|ref|YP_003850381.1| - 0.00035 20.9 19.6 0.013 15.9 4.5 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|304315234|ref|YP_003850381.1| - 0.013 15.9 15.7 0.033 14.5 2.3 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315234|ref|YP_003850381.1| - 0.019 15.4 19.5 0.063 13.8 13.3 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|304315234|ref|YP_003850381.1| - 0.049 13.5 9.5 0.17 11.7 6.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304315234|ref|YP_003850381.1| - 0.26 11.7 19.8 8 6.9 13.7 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF406 PF04175.7 gi|304315234|ref|YP_003850381.1| - 1.4 9.4 6.3 3.2 8.2 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF406) PYC_OADA PF02436.13 gi|304315235|ref|YP_003850382.1| - 5.7e-64 215.1 0.0 1.1e-63 214.2 0.0 1.5 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|304315235|ref|YP_003850382.1| - 1.6e-41 142.5 0.0 2.3e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|304315235|ref|YP_003850382.1| - 6e-18 64.2 4.7 1.1e-17 63.4 3.3 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|304315235|ref|YP_003850382.1| - 1.4e-10 40.6 0.8 4.3e-05 23.0 0.1 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|304315235|ref|YP_003850382.1| - 8e-06 25.3 1.8 0.047 13.0 0.2 2.2 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|304315235|ref|YP_003850382.1| - 0.00022 20.5 2.8 0.014 14.5 0.4 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|304315235|ref|YP_003850382.1| - 0.00031 21.0 0.6 0.18 12.1 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein NQRA PF05896.6 gi|304315235|ref|YP_003850382.1| - 0.013 14.7 0.6 0.023 13.9 0.4 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.14 gi|304315235|ref|YP_003850382.1| - 0.032 13.9 0.4 0.081 12.6 0.3 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein DUF2118 PF09891.4 gi|304315235|ref|YP_003850382.1| - 0.066 12.9 1.3 0.42 10.3 0.8 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) QRPTase_N PF02749.11 gi|304315235|ref|YP_003850382.1| - 0.077 12.8 0.3 4.3 7.2 0.1 2.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain CbiM PF01891.11 gi|304315236|ref|YP_003850383.1| - 9e-30 103.8 21.1 1.2e-29 103.4 14.6 1.1 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region QueC PF06508.8 gi|304315237|ref|YP_003850384.1| - 6.4e-64 215.0 0.0 7.2e-64 214.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|304315237|ref|YP_003850384.1| - 2.1e-07 30.5 0.0 0.00029 20.3 0.0 2.4 3 0 0 3 3 3 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|304315237|ref|YP_003850384.1| - 7.3e-07 28.9 0.2 1.4e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|304315237|ref|YP_003850384.1| - 0.00062 18.7 0.0 0.0018 17.1 0.0 1.6 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.15 gi|304315237|ref|YP_003850384.1| - 0.0049 16.3 0.0 0.05 13.1 0.0 2.0 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|304315237|ref|YP_003850384.1| - 0.018 13.5 0.0 0.03 12.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|304315237|ref|YP_003850384.1| - 0.025 13.6 0.0 0.22 10.4 0.0 1.9 2 0 0 2 2 2 0 Arginosuccinate synthase DUF111 PF01969.12 gi|304315238|ref|YP_003850385.1| - 2.3e-124 415.0 0.2 2.6e-124 414.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Nit_Regul_Hom PF10126.4 gi|304315239|ref|YP_003850386.1| - 4.3e-50 168.0 0.2 4.8e-50 167.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII CBS PF00571.23 gi|304315239|ref|YP_003850386.1| - 0.014 15.1 0.3 0.065 13.0 0.0 2.0 2 0 0 2 2 2 0 CBS domain DUF3927 PF13064.1 gi|304315239|ref|YP_003850386.1| - 0.15 11.5 0.4 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3927) PgpA PF04608.8 gi|304315240|ref|YP_003850387.1| - 1e-11 44.8 0.1 1.5e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|304315241|ref|YP_003850388.1| - 2.2e-73 246.7 10.5 2.5e-73 246.5 7.3 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PGPGW PF09656.5 gi|304315241|ref|YP_003850388.1| - 9.8 5.5 12.7 0.34 10.2 3.2 2.7 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) Trm56 PF01994.11 gi|304315242|ref|YP_003850389.1| - 2.6e-45 153.0 0.0 3.1e-45 152.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 CobA_CobO_BtuR PF02572.10 gi|304315242|ref|YP_003850389.1| - 0.058 13.0 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NIR_SIR_ferr PF03460.12 gi|304315242|ref|YP_003850389.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain UPRTase PF14681.1 gi|304315243|ref|YP_003850390.1| - 9.7e-43 145.7 0.0 1.1e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|304315243|ref|YP_003850390.1| - 1.3e-08 34.6 0.0 3e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|304315243|ref|YP_003850390.1| - 0.13 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Fumerase_C PF05683.7 gi|304315244|ref|YP_003850391.1| - 3.9e-23 81.6 0.0 6.1e-23 81.0 0.0 1.3 1 1 0 1 1 1 1 Fumarase C-terminus PapD_N PF00345.15 gi|304315244|ref|YP_003850391.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain Pyridoxal_deC PF00282.14 gi|304315245|ref|YP_003850392.1| - 5.2e-37 127.1 0.0 8e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|304315245|ref|YP_003850392.1| - 1.1e-14 53.9 0.0 5.7e-09 35.1 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|304315245|ref|YP_003850392.1| - 2.1e-07 30.3 0.3 3.5e-07 29.5 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|304315245|ref|YP_003850392.1| - 1.3e-06 27.5 0.0 1.8e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|304315245|ref|YP_003850392.1| - 3.3e-06 26.4 0.1 5.1e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|304315245|ref|YP_003850392.1| - 0.00039 19.0 0.0 0.0083 14.6 0.0 2.0 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) PPDK_N PF01326.14 gi|304315246|ref|YP_003850393.1| - 2.2e-109 365.4 0.1 4.1e-109 364.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|304315246|ref|YP_003850393.1| - 6.9e-90 300.8 0.0 1.2e-89 300.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|304315246|ref|YP_003850393.1| - 5.6e-27 93.1 1.7 1.5e-26 91.7 1.2 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|304315246|ref|YP_003850393.1| - 0.0012 17.8 0.1 0.0045 15.9 0.0 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Epimerase_2 PF02350.14 gi|304315246|ref|YP_003850393.1| - 0.034 12.9 0.1 1.1 7.9 0.0 2.8 3 0 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase Ribosomal_L16 PF00252.13 gi|304315247|ref|YP_003850394.1| - 5e-35 120.1 1.7 5.6e-35 119.9 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RNA_pol_L PF01193.19 gi|304315247|ref|YP_003850394.1| - 0.02 14.0 0.0 0.026 13.6 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Malate_DH PF12434.3 gi|304315247|ref|YP_003850394.1| - 0.1 12.2 0.1 0.31 10.8 0.1 1.8 1 0 0 1 1 1 0 Malate dehydrogenase enzyme CbiA PF01656.18 gi|304315248|ref|YP_003850395.1| - 3.3e-36 124.5 0.1 4.1e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|304315248|ref|YP_003850395.1| - 7.9e-09 34.9 0.4 1.8e-06 27.2 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|304315248|ref|YP_003850395.1| - 6.7e-08 32.0 0.5 0.0054 15.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|304315248|ref|YP_003850395.1| - 0.00011 21.8 0.7 0.00074 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|304315248|ref|YP_003850395.1| - 0.0012 18.7 0.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|304315248|ref|YP_003850395.1| - 0.0058 16.2 0.0 0.023 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|304315248|ref|YP_003850395.1| - 0.0061 16.8 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|304315248|ref|YP_003850395.1| - 0.011 16.6 0.1 0.025 15.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|304315248|ref|YP_003850395.1| - 0.031 13.6 0.0 0.8 9.0 0.0 2.1 2 0 0 2 2 2 0 YhjQ protein NTPase_1 PF03266.10 gi|304315248|ref|YP_003850395.1| - 0.04 13.6 0.4 0.078 12.6 0.3 1.5 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.12 gi|304315248|ref|YP_003850395.1| - 0.045 13.2 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PRK PF00485.13 gi|304315248|ref|YP_003850395.1| - 0.092 12.2 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.17 gi|304315248|ref|YP_003850395.1| - 0.095 12.1 0.1 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|304315248|ref|YP_003850395.1| - 0.097 12.3 0.4 4.6 6.8 0.1 2.5 2 1 1 3 3 3 0 Adenylylsulphate kinase AAA_16 PF13191.1 gi|304315248|ref|YP_003850395.1| - 0.097 12.6 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|304315248|ref|YP_003850395.1| - 0.18 10.6 0.6 0.28 10.0 0.4 1.3 1 0 0 1 1 1 0 NB-ARC domain Pcc1 PF09341.5 gi|304315249|ref|YP_003850396.1| - 2e-05 24.5 0.4 3e-05 23.9 0.2 1.4 1 1 0 1 1 1 1 Transcription factor Pcc1 tRNA-synt_2b PF00587.20 gi|304315250|ref|YP_003850397.1| - 1.9e-11 43.8 0.0 3.8e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2HC5 PF06221.8 gi|304315251|ref|YP_003850398.1| - 0.00015 21.4 3.9 0.00022 20.9 2.7 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.19 gi|304315251|ref|YP_003850398.1| - 0.0031 17.3 1.8 0.0031 17.3 1.2 2.0 2 0 0 2 2 2 1 B-box zinc finger DUF4501 PF14946.1 gi|304315251|ref|YP_003850398.1| - 0.041 13.3 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) DUF2180 PF09947.4 gi|304315251|ref|YP_003850398.1| - 0.049 13.3 3.1 0.049 13.3 2.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) Laminin_EGF PF00053.19 gi|304315251|ref|YP_003850398.1| - 0.087 12.7 6.3 0.13 12.2 4.4 1.2 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) FYVE PF01363.16 gi|304315251|ref|YP_003850398.1| - 0.18 11.6 7.4 5.9 6.8 5.1 2.1 1 1 0 1 1 1 0 FYVE zinc finger zf-C3HC4_2 PF13923.1 gi|304315251|ref|YP_003850398.1| - 0.19 11.7 6.1 6 6.9 1.1 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.1 gi|304315251|ref|YP_003850398.1| - 0.28 11.0 3.1 0.5 10.2 2.1 1.4 1 1 0 1 1 1 0 Ring finger domain zf-RING_5 PF14634.1 gi|304315251|ref|YP_003850398.1| - 1.9 8.3 7.0 8.6 6.1 5.1 1.8 1 1 1 2 2 2 0 zinc-RING finger domain HisKA_2 PF07568.7 gi|304315252|ref|YP_003850399.1| - 1.9e-22 78.9 1.6 1.9e-22 78.9 1.1 1.8 2 0 0 2 2 2 1 Histidine kinase HATPase_c PF02518.21 gi|304315252|ref|YP_003850399.1| - 3.6e-15 55.6 0.0 7.3e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|304315252|ref|YP_003850399.1| - 1.6e-10 41.2 0.5 4.2e-10 39.9 0.3 1.7 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.1 gi|304315252|ref|YP_003850399.1| - 1.4e-05 24.7 0.0 4.5e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|304315252|ref|YP_003850399.1| - 1.8e-05 24.4 0.0 3.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|304315252|ref|YP_003850399.1| - 0.0018 18.0 0.0 0.0045 16.7 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|304315252|ref|YP_003850399.1| - 0.0044 17.3 0.1 0.036 14.4 0.1 2.4 1 1 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|304315252|ref|YP_003850399.1| - 0.0065 16.4 0.0 0.48 10.4 0.0 2.6 1 1 1 2 2 2 1 PAS fold FKBP_C PF00254.23 gi|304315253|ref|YP_003850400.1| - 4.2e-18 65.1 0.1 9.2e-18 64.0 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase HIGH_NTase1 PF05636.6 gi|304315254|ref|YP_003850401.1| - 1.2e-14 54.1 0.0 1.2e-11 44.3 0.0 2.3 2 1 0 2 2 2 2 HIGH Nucleotidyl Transferase Amidohydro_4 PF13147.1 gi|304315255|ref|YP_003850402.1| - 4.7e-23 82.5 0.6 6.6e-23 82.1 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|304315255|ref|YP_003850402.1| - 2e-19 70.4 0.0 4.6e-19 69.2 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|304315255|ref|YP_003850402.1| - 2.8e-13 49.4 0.2 5.7e-13 48.4 0.2 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|304315255|ref|YP_003850402.1| - 7.5e-08 32.0 0.1 0.00017 20.9 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family RNA_bind_2 PF10133.4 gi|304315256|ref|YP_003850403.1| - 1e-20 73.5 0.5 1.1e-20 73.3 0.3 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein MCR_alpha_N PF02745.10 gi|304315257|ref|YP_003850404.1| - 1.3e-161 536.0 0.2 1.7e-161 535.6 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|304315257|ref|YP_003850404.1| - 9.3e-69 229.3 3.7 1.1e-67 225.7 1.9 2.4 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.10 gi|304315257|ref|YP_003850404.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_gamma PF02240.11 gi|304315258|ref|YP_003850405.1| - 8.3e-145 480.3 3.8 9.5e-145 480.1 2.7 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_D PF02505.9 gi|304315259|ref|YP_003850406.1| - 2e-66 222.2 0.4 2.2e-66 222.1 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|304315260|ref|YP_003850407.1| - 2.8e-154 511.7 7.2 3.8e-154 511.3 5.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|304315260|ref|YP_003850407.1| - 8.3e-92 305.6 1.6 1.3e-91 305.0 1.1 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Fer4 PF00037.22 gi|304315261|ref|YP_003850408.1| - 1.4e-65 214.4 132.4 4.6e-07 29.1 2.8 12.6 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315261|ref|YP_003850408.1| - 2.2e-56 188.0 95.2 1.4e-11 44.5 8.1 8.2 6 2 2 8 8 8 8 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304315261|ref|YP_003850408.1| - 1.1e-46 156.4 96.5 5.2e-09 35.7 9.6 8.0 5 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315261|ref|YP_003850408.1| - 4.1e-44 148.6 190.4 3.8e-09 36.6 7.7 8.5 2 2 9 11 11 11 11 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315261|ref|YP_003850408.1| - 1.3e-42 141.8 130.3 3.2e-07 29.9 2.9 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315261|ref|YP_003850408.1| - 8.8e-40 135.2 88.6 5.4e-06 27.0 6.8 11.4 9 3 2 11 11 11 11 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304315261|ref|YP_003850408.1| - 1.1e-34 116.2 120.4 9.9e-07 28.3 1.8 12.4 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304315261|ref|YP_003850408.1| - 9.2e-33 112.0 87.6 6.6e-08 32.4 5.6 8.5 4 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304315261|ref|YP_003850408.1| - 2e-30 104.4 102.5 4.1e-10 39.3 6.5 8.3 5 3 2 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315261|ref|YP_003850408.1| - 2.8e-24 83.2 116.8 0.0035 17.5 0.9 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304315261|ref|YP_003850408.1| - 1.2e-21 75.4 155.8 0.044 14.3 4.3 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304315261|ref|YP_003850408.1| - 2.2e-20 72.7 97.0 1.5e-05 25.2 5.7 10.4 5 4 4 9 9 9 8 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315261|ref|YP_003850408.1| - 1.5e-17 63.7 110.0 0.00037 20.8 1.1 11.9 9 3 3 12 12 12 10 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304315261|ref|YP_003850408.1| - 6.1e-16 58.1 60.9 9.6e-06 25.4 7.1 6.4 2 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315261|ref|YP_003850408.1| - 5.7e-12 46.0 103.9 0.0017 18.8 0.6 12.2 8 4 3 11 11 11 7 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|304315261|ref|YP_003850408.1| - 0.00027 21.2 113.2 0.0061 16.9 2.3 12.0 9 4 1 10 10 10 3 4Fe-4S single cluster domain NiFeSe_Hases PF00374.14 gi|304315262|ref|YP_003850409.1| - 3e-37 128.5 0.0 3.5e-18 65.6 0.0 3.1 1 1 0 3 3 3 3 Nickel-dependent hydrogenase RTX PF02382.10 gi|304315262|ref|YP_003850409.1| - 0.053 11.7 0.3 0.11 10.7 0.0 1.5 2 0 0 2 2 2 0 RTX N-terminal domain Oxidored_q6 PF01058.17 gi|304315263|ref|YP_003850410.1| - 8.9e-31 106.2 0.0 1.5e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit FlpD PF02662.11 gi|304315264|ref|YP_003850411.1| - 2e-55 185.7 0.2 2.3e-55 185.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fibrillarin_2 PF10113.4 gi|304315265|ref|YP_003850412.1| - 2e-258 857.8 0.0 2.2e-258 857.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein FlpD PF02662.11 gi|304315266|ref|YP_003850413.1| - 4.2e-57 191.1 0.0 4.7e-57 191.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FrhB_FdhB_C PF04432.8 gi|304315267|ref|YP_003850414.1| - 1.5e-43 148.0 0.0 1.5e-43 148.0 0.0 2.0 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|304315267|ref|YP_003850414.1| - 9e-20 70.3 0.0 1.8e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|304315267|ref|YP_003850414.1| - 6.5e-11 42.0 14.9 1.2e-10 41.2 9.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315267|ref|YP_003850414.1| - 6e-07 29.6 17.6 3.2e-06 27.2 11.0 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315267|ref|YP_003850414.1| - 1.7e-06 27.5 15.8 0.0015 18.3 1.0 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315267|ref|YP_003850414.1| - 1.2e-05 24.9 29.6 0.00051 19.7 1.5 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315267|ref|YP_003850414.1| - 1.7e-05 25.1 11.5 1.7e-05 25.1 7.9 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304315267|ref|YP_003850414.1| - 2.7e-05 24.4 14.1 2.7e-05 24.4 9.7 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315267|ref|YP_003850414.1| - 6.4e-05 23.6 9.6 0.057 14.1 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|304315267|ref|YP_003850414.1| - 0.00028 20.3 4.6 0.00028 20.3 3.2 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315267|ref|YP_003850414.1| - 0.00053 20.3 20.5 0.0033 17.7 12.9 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315267|ref|YP_003850414.1| - 0.00069 19.7 4.7 0.00069 19.7 3.2 3.9 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315267|ref|YP_003850414.1| - 0.0036 17.1 11.5 0.16 11.8 0.2 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315267|ref|YP_003850414.1| - 0.0067 16.9 24.9 0.0081 16.6 3.1 3.8 3 1 1 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315267|ref|YP_003850414.1| - 0.0078 16.0 5.0 0.0078 16.0 3.4 3.7 3 1 0 3 3 3 1 4Fe-4S binding domain Esterase_phd PF10503.4 gi|304315267|ref|YP_003850414.1| - 0.037 13.2 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase Fer4_13 PF13370.1 gi|304315267|ref|YP_003850414.1| - 0.053 13.9 19.9 0.1 12.9 3.5 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|304315267|ref|YP_003850414.1| - 0.21 12.1 11.4 4.2 8.0 0.5 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Molybdop_Fe4S4 PF04879.11 gi|304315268|ref|YP_003850415.1| - 2.7e-12 46.2 2.7 4.6e-12 45.5 1.9 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.17 gi|304315268|ref|YP_003850415.1| - 8.1e-08 31.4 0.0 1.7e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase MRAP PF15183.1 gi|304315270|ref|YP_003850417.1| - 0.029 13.9 0.0 0.033 13.7 0.0 1.0 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family HMD PF03201.11 gi|304315271|ref|YP_003850418.1| - 6e-40 135.1 0.7 1.1e-39 134.2 0.2 1.7 2 0 0 2 2 2 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase Radical_SAM PF04055.16 gi|304315272|ref|YP_003850419.1| - 2.3e-11 44.1 0.3 4.4e-11 43.2 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|304315272|ref|YP_003850419.1| - 4.5e-06 26.4 0.1 1.6e-05 24.6 0.1 1.9 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain WTX PF09422.5 gi|304315272|ref|YP_003850419.1| - 0.19 10.6 0.2 0.39 9.6 0.0 1.5 2 0 0 2 2 2 0 WTX protein DUF3236 PF11576.3 gi|304315273|ref|YP_003850420.1| - 2.6e-75 251.0 0.1 2.9e-75 250.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) DUF1188 PF06690.6 gi|304315274|ref|YP_003850421.1| - 9.7e-94 313.1 0.1 1.1e-93 312.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) NIF3 PF01784.13 gi|304315275|ref|YP_003850422.1| - 2.7e-34 118.7 0.0 2e-28 99.6 0.0 2.0 1 1 1 2 2 2 2 NIF3 (NGG1p interacting factor 3) ThiF PF00899.16 gi|304315276|ref|YP_003850423.1| - 1.1e-06 28.5 0.2 2.3e-06 27.4 0.1 1.5 1 1 1 2 2 2 1 ThiF family Biotin_lipoyl_2 PF13533.1 gi|304315276|ref|YP_003850423.1| - 0.044 13.4 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Biotin-lipoyl like UPF0254 PF06787.6 gi|304315277|ref|YP_003850424.1| - 9.8e-67 223.4 0.0 1.1e-66 223.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.12 gi|304315277|ref|YP_003850424.1| - 0.00053 19.4 0.2 0.0082 15.5 0.0 2.2 2 0 0 2 2 2 1 Competence-damaged protein ABC_tran PF00005.22 gi|304315278|ref|YP_003850425.1| - 8.5e-09 35.8 0.0 1.2e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304315278|ref|YP_003850425.1| - 0.0013 18.8 0.1 0.0015 18.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain UPF0051 PF01458.12 gi|304315279|ref|YP_003850426.1| - 2.3e-57 194.0 0.2 3.1e-57 193.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Aldolase PF01081.14 gi|304315279|ref|YP_003850426.1| - 0.05 12.7 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 KDPG and KHG aldolase TIP39 PF14980.1 gi|304315279|ref|YP_003850426.1| - 0.11 12.2 0.0 16 5.2 0.1 2.6 2 0 0 2 2 2 0 TIP39 peptide PRC PF05239.11 gi|304315280|ref|YP_003850427.1| - 7e-11 41.8 3.6 1.1e-10 41.2 2.5 1.3 1 1 0 1 1 1 1 PRC-barrel domain Regulator_TrmB PF11495.3 gi|304315280|ref|YP_003850427.1| - 0.13 11.1 0.8 0.16 10.9 0.5 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB NTP_transf_3 PF12804.2 gi|304315281|ref|YP_003850428.1| - 1.5e-20 73.8 0.0 1.7e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|304315281|ref|YP_003850428.1| - 6.8e-12 45.3 0.0 9.1e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|304315281|ref|YP_003850428.1| - 5.9e-07 29.0 0.0 7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|304315281|ref|YP_003850428.1| - 6.1e-07 29.2 0.0 7.8e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase DUF2064 PF09837.4 gi|304315281|ref|YP_003850428.1| - 0.023 14.2 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|304315281|ref|YP_003850428.1| - 0.028 13.3 0.0 0.05 12.5 0.0 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF4029 PF13221.1 gi|304315281|ref|YP_003850428.1| - 0.064 13.6 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4029) DUF2114 PF09887.4 gi|304315282|ref|YP_003850429.1| - 2.9e-222 737.8 0.4 3.8e-222 737.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Usp PF00582.21 gi|304315283|ref|YP_003850430.1| - 5.4e-29 101.1 0.0 6e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Na_Ca_ex PF01699.19 gi|304315284|ref|YP_003850431.1| - 9e-53 177.6 31.7 2.7e-27 95.0 6.3 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF1980 PF09323.5 gi|304315284|ref|YP_003850431.1| - 0.32 10.7 0.0 0.32 10.7 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1980) Glycophorin_A PF01102.13 gi|304315284|ref|YP_003850431.1| - 3.5 7.4 8.4 9.7 5.9 0.0 3.7 3 1 0 3 3 3 0 Glycophorin A MtrH PF02007.13 gi|304315285|ref|YP_003850432.1| - 1.2e-156 520.2 1.5 1.3e-156 520.0 1.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.8 gi|304315286|ref|YP_003850433.1| - 1.4e-32 111.1 1.2 1.9e-32 110.7 0.9 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G Lipoprotein_18 PF06804.6 gi|304315286|ref|YP_003850433.1| - 0.12 11.1 0.0 0.14 10.8 0.0 1.0 1 0 0 1 1 1 0 NlpB/DapX lipoprotein DUF2007 PF09413.5 gi|304315286|ref|YP_003850433.1| - 0.13 12.1 0.7 1.3 8.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2007) MtrF PF09472.5 gi|304315287|ref|YP_003850434.1| - 1e-26 91.8 1.5 1.2e-26 91.7 1.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) YqfD PF06898.6 gi|304315287|ref|YP_003850434.1| - 0.014 14.1 0.1 0.015 13.9 0.1 1.0 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD SpecificRecomb PF10136.4 gi|304315287|ref|YP_003850434.1| - 0.017 13.2 0.2 0.017 13.2 0.1 1.0 1 0 0 1 1 1 0 Site-specific recombinase DUF2273 PF10031.4 gi|304315287|ref|YP_003850434.1| - 3.7 7.2 7.2 8.4 6.0 5.0 1.9 1 1 0 1 1 1 0 Small integral membrane protein (DUF2273) MtrA PF04208.9 gi|304315288|ref|YP_003850435.1| - 3.1e-91 303.5 4.5 4e-91 303.2 3.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|304315288|ref|YP_003850435.1| - 0.0062 15.7 0.5 0.01 15.0 0.4 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.7 gi|304315289|ref|YP_003850436.1| - 2.8e-37 126.6 0.1 3.1e-37 126.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B DUF1192 PF06698.6 gi|304315289|ref|YP_003850436.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) MtrC PF04211.8 gi|304315290|ref|YP_003850437.1| - 1.4e-114 381.6 29.7 1.6e-114 381.4 20.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C DUF1294 PF06961.8 gi|304315290|ref|YP_003850437.1| - 1.2 9.1 6.4 0.26 11.2 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1294) Caveolin PF01146.12 gi|304315290|ref|YP_003850437.1| - 4.7 6.7 6.3 27 4.3 1.2 2.8 2 1 1 3 3 3 0 Caveolin MtrD PF04207.7 gi|304315291|ref|YP_003850438.1| - 4.7e-111 369.5 34.0 5.4e-111 369.3 23.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D DUF1049 PF06305.6 gi|304315291|ref|YP_003850438.1| - 0.88 9.1 0.0 0.88 9.1 0.0 4.6 6 0 0 6 6 6 0 Protein of unknown function (DUF1049) MtrE PF04206.7 gi|304315292|ref|YP_003850439.1| - 1.3e-144 480.1 16.3 1.5e-144 479.9 11.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E RseC_MucC PF04246.7 gi|304315292|ref|YP_003850439.1| - 5.7 6.5 8.7 1 8.9 0.3 3.0 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC MCR_alpha_N PF02745.10 gi|304315293|ref|YP_003850440.1| - 2.8e-155 515.2 0.7 3.7e-155 514.8 0.5 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|304315293|ref|YP_003850440.1| - 1.4e-67 225.4 3.1 3e-67 224.4 2.2 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Lipoprotein_3 PF00938.12 gi|304315293|ref|YP_003850440.1| - 0.035 13.8 0.1 0.064 13.0 0.1 1.3 1 0 0 1 1 1 0 Lipoprotein MCR_gamma PF02240.11 gi|304315294|ref|YP_003850441.1| - 6.5e-145 480.7 2.8 7.3e-145 480.5 1.9 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|304315295|ref|YP_003850442.1| - 2.4e-44 151.1 4.7 3.5e-39 134.2 3.3 3.2 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|304315296|ref|YP_003850443.1| - 9.7e-56 187.5 0.6 1.2e-55 187.2 0.4 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|304315297|ref|YP_003850444.1| - 3.2e-154 511.5 6.8 4.5e-154 511.0 4.7 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|304315297|ref|YP_003850444.1| - 6.9e-93 309.1 2.7 1.1e-92 308.5 1.9 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF4139 PF13598.1 gi|304315297|ref|YP_003850444.1| - 0.041 13.2 0.0 0.069 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) DUF512 PF04459.7 gi|304315298|ref|YP_003850445.1| - 1.9e-31 108.7 0.0 2.5e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|304315298|ref|YP_003850445.1| - 9.1e-14 51.9 0.5 2.4e-13 50.5 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|304315299|ref|YP_003850446.1| - 2.9e-34 118.6 0.4 2e-33 115.9 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|304315299|ref|YP_003850446.1| - 2.7e-09 36.9 0.3 1.7e-08 34.3 0.1 2.3 2 1 0 2 2 2 1 B12 binding domain DUF134 PF02001.11 gi|304315300|ref|YP_003850447.1| - 5.3e-38 129.1 0.4 8.2e-38 128.5 0.1 1.4 2 0 0 2 2 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|304315300|ref|YP_003850447.1| - 8.7e-05 21.9 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HypA PF01155.14 gi|304315300|ref|YP_003850447.1| - 0.00071 19.2 0.2 0.00071 19.2 0.1 2.2 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family HTH_10 PF04967.7 gi|304315300|ref|YP_003850447.1| - 0.0027 17.2 0.1 0.0044 16.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_37 PF13744.1 gi|304315300|ref|YP_003850447.1| - 0.0046 16.7 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|304315300|ref|YP_003850447.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.22 gi|304315300|ref|YP_003850447.1| - 0.027 14.2 0.1 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|304315300|ref|YP_003850447.1| - 0.04 13.2 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 GCC2_GCC3 PF07699.8 gi|304315300|ref|YP_003850447.1| - 0.044 13.3 0.3 0.044 13.3 0.2 2.8 3 0 0 3 3 3 0 GCC2 and GCC3 UPF0175 PF03683.8 gi|304315300|ref|YP_003850447.1| - 0.052 13.0 0.0 1 8.8 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) Sigma70_ECF PF07638.6 gi|304315300|ref|YP_003850447.1| - 0.074 12.7 0.1 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor tRNA-synt_1g PF09334.6 gi|304315300|ref|YP_003850447.1| - 0.083 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) HTH_23 PF13384.1 gi|304315300|ref|YP_003850447.1| - 0.11 12.1 0.0 0.3 10.8 0.0 1.7 1 1 0 1 1 1 0 Homeodomain-like domain TFIIS_C PF01096.13 gi|304315300|ref|YP_003850447.1| - 0.31 10.7 17.9 1.6 8.4 0.3 4.2 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|304315300|ref|YP_003850447.1| - 0.77 9.2 13.8 12 5.5 0.5 4.3 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|304315300|ref|YP_003850447.1| - 1.1 8.8 8.9 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-binding domain DZR PF12773.2 gi|304315300|ref|YP_003850447.1| - 2.1 8.2 17.4 1.6 8.6 1.1 2.7 2 2 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|304315300|ref|YP_003850447.1| - 4.7 6.5 16.3 0.59 9.4 3.6 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Metallophos PF00149.23 gi|304315301|ref|YP_003850448.1| - 4.7e-11 42.4 0.0 4.9e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|304315301|ref|YP_003850448.1| - 1.4e-06 28.2 0.0 2.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Kinocilin PF15033.1 gi|304315301|ref|YP_003850448.1| - 0.042 13.3 0.8 0.16 11.4 0.2 2.1 2 0 0 2 2 2 0 Kinocilin protein Metallophos_3 PF14582.1 gi|304315301|ref|YP_003850448.1| - 0.13 11.3 0.0 4.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily MCR_C PF04609.7 gi|304315302|ref|YP_003850449.1| - 1.4e-117 391.2 0.4 1.7e-117 390.9 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C PDDEXK_1 PF12705.2 gi|304315302|ref|YP_003850449.1| - 0.14 11.5 0.0 0.79 9.0 0.0 1.9 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily 2-ph_phosp PF04029.9 gi|304315304|ref|YP_003850451.1| - 2.7e-58 196.7 0.0 2.9e-58 196.6 0.0 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase TraB PF01963.12 gi|304315305|ref|YP_003850452.1| - 5.9e-46 157.0 0.1 7.5e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 TraB family MoaE PF02391.12 gi|304315305|ref|YP_003850452.1| - 0.035 13.9 0.1 0.059 13.1 0.1 1.4 1 0 0 1 1 1 0 MoaE protein DUF1922 PF09082.5 gi|304315306|ref|YP_003850453.1| - 5.1e-37 125.7 4.1 6.1e-37 125.5 2.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) GTP_EFTU PF00009.22 gi|304315307|ref|YP_003850454.1| - 1.1e-31 109.7 0.0 1.8e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|304315307|ref|YP_003850454.1| - 1.4e-13 50.8 0.3 4.6e-13 49.1 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|304315307|ref|YP_003850454.1| - 2.9e-11 43.3 0.5 2.9e-11 43.3 0.4 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|304315307|ref|YP_003850454.1| - 0.00028 20.4 0.3 0.0014 18.2 0.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|304315307|ref|YP_003850454.1| - 0.0015 18.4 0.1 0.0043 17.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|304315307|ref|YP_003850454.1| - 0.0031 17.0 0.0 0.057 12.9 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|304315307|ref|YP_003850454.1| - 0.015 14.0 1.5 0.11 11.2 1.1 2.1 1 1 0 1 1 1 0 ArgK protein AAA_4 PF04326.9 gi|304315307|ref|YP_003850454.1| - 0.05 13.7 0.1 0.23 11.6 0.1 2.2 1 1 0 1 1 1 0 Divergent AAA domain ATP_bind_3 PF01171.15 gi|304315308|ref|YP_003850455.1| - 1.5e-12 47.3 0.0 7.4e-12 45.1 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|304315308|ref|YP_003850455.1| - 0.0058 15.2 0.0 0.0073 14.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|304315308|ref|YP_003850455.1| - 0.14 11.4 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 ATP-binding region DUF77 PF01910.12 gi|304315309|ref|YP_003850456.1| - 8.5e-32 108.6 0.1 9.5e-32 108.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DegT_DnrJ_EryC1 PF01041.12 gi|304315310|ref|YP_003850457.1| - 1.2e-142 475.2 0.0 1.4e-142 475.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|304315310|ref|YP_003850457.1| - 1.5e-08 34.0 0.0 7.1e-08 31.7 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|304315310|ref|YP_003850457.1| - 3e-08 33.1 0.0 5.6e-08 32.2 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|304315310|ref|YP_003850457.1| - 7.2e-07 28.2 0.0 1.2e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|304315310|ref|YP_003850457.1| - 4.4e-06 25.2 0.0 6.6e-06 24.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1967 PF09269.6 gi|304315310|ref|YP_003850457.1| - 0.13 11.9 0.1 13 5.5 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1967) Abi PF02517.11 gi|304315311|ref|YP_003850458.1| - 1.8e-11 44.0 8.0 1.8e-11 44.0 5.6 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity NDUF_B12 PF08122.7 gi|304315311|ref|YP_003850458.1| - 2.8 7.7 6.6 1.3 8.7 0.0 3.3 3 1 1 4 4 4 0 NADH-ubiquinone oxidoreductase B12 subunit family Epiglycanin_C PF14654.1 gi|304315311|ref|YP_003850458.1| - 5.9 6.9 8.5 1.4 8.9 0.1 2.9 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region TRM PF02005.11 gi|304315312|ref|YP_003850459.1| - 1.7e-137 458.3 0.0 2e-137 458.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|304315312|ref|YP_003850459.1| - 2.2e-05 23.7 0.0 3.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|304315312|ref|YP_003850459.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein RNHCP PF12647.2 gi|304315312|ref|YP_003850459.1| - 0.042 13.6 0.2 0.084 12.7 0.1 1.4 1 0 0 1 1 1 0 RNHCP domain LexA_DNA_bind PF01726.11 gi|304315312|ref|YP_003850459.1| - 0.087 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF2188 PF09954.4 gi|304315313|ref|YP_003850460.1| - 0.0034 17.2 0.0 0.0059 16.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) DUF4013 PF13197.1 gi|304315314|ref|YP_003850461.1| - 5.7e-08 32.2 1.0 6.8e-08 32.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF4013 PF13197.1 gi|304315315|ref|YP_003850462.1| - 6e-25 87.5 24.8 6e-25 87.5 17.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF307 PF03733.8 gi|304315315|ref|YP_003850462.1| - 0.0099 16.2 8.4 0.0099 16.2 5.8 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF307) DUF2231 PF09990.4 gi|304315315|ref|YP_003850462.1| - 5 7.5 13.1 1.1 9.5 1.3 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) DUF2592 PF10766.4 gi|304315315|ref|YP_003850462.1| - 5.4 6.4 0.0 2.2 7.7 1.2 3.7 4 1 0 4 4 4 0 Protein of unknown function (DUF2592) HTH_24 PF13412.1 gi|304315316|ref|YP_003850463.1| - 7.2e-16 57.3 0.4 1.2e-15 56.6 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|304315316|ref|YP_003850463.1| - 2.2e-14 52.6 0.2 4.2e-14 51.8 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|304315316|ref|YP_003850463.1| - 8.4e-13 47.8 0.0 1.3e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|304315316|ref|YP_003850463.1| - 6.1e-06 25.7 0.1 1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|304315316|ref|YP_003850463.1| - 3.2e-05 23.2 0.0 5.8e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|304315316|ref|YP_003850463.1| - 0.00013 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|304315316|ref|YP_003850463.1| - 0.00018 21.0 0.0 0.00037 20.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|304315316|ref|YP_003850463.1| - 0.0002 21.0 0.1 0.00064 19.3 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|304315316|ref|YP_003850463.1| - 0.00023 20.6 0.1 0.00047 19.6 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|304315316|ref|YP_003850463.1| - 0.00037 20.1 0.0 0.00061 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|304315316|ref|YP_003850463.1| - 0.00042 19.9 0.0 0.00068 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|304315316|ref|YP_003850463.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|304315316|ref|YP_003850463.1| - 0.0022 18.2 0.0 0.0043 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain SICA_C PF12879.2 gi|304315316|ref|YP_003850463.1| - 0.0024 17.7 0.4 0.0049 16.7 0.1 1.5 2 0 0 2 2 2 1 SICA C-terminal inner membrane domain HTH_38 PF13936.1 gi|304315316|ref|YP_003850463.1| - 0.0025 17.3 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|304315316|ref|YP_003850463.1| - 0.0027 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|304315316|ref|YP_003850463.1| - 0.0037 16.9 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2042 PF09743.4 gi|304315316|ref|YP_003850463.1| - 0.0054 16.0 0.9 0.0094 15.2 0.3 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2042) Fe_dep_repress PF01325.14 gi|304315316|ref|YP_003850463.1| - 0.013 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NdhM PF10664.4 gi|304315316|ref|YP_003850463.1| - 0.014 15.3 0.1 4.5 7.2 0.0 2.4 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M HTH_Tnp_ISL3 PF13542.1 gi|304315316|ref|YP_003850463.1| - 0.018 14.2 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.1 gi|304315316|ref|YP_003850463.1| - 0.025 14.5 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|304315316|ref|YP_003850463.1| - 0.027 13.7 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF977 PF06163.6 gi|304315316|ref|YP_003850463.1| - 0.031 14.0 0.1 0.085 12.5 0.1 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) HTH_28 PF13518.1 gi|304315316|ref|YP_003850463.1| - 0.038 13.9 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|304315316|ref|YP_003850463.1| - 0.12 12.2 0.1 0.37 10.6 0.1 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|304315316|ref|YP_003850463.1| - 0.15 11.6 0.1 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain Hist_deacetyl PF00850.14 gi|304315317|ref|YP_003850464.1| - 7.7e-81 271.7 0.0 8.9e-81 271.5 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF2100 PF09873.4 gi|304315318|ref|YP_003850465.1| - 8.9e-61 205.0 1.4 1e-60 204.8 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) GCHY-1 PF02649.9 gi|304315319|ref|YP_003850466.1| - 2e-89 299.4 0.9 2.3e-89 299.3 0.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF507 PF04368.8 gi|304315319|ref|YP_003850466.1| - 0.045 13.3 1.6 0.079 12.5 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF507) DUF2120 PF09893.4 gi|304315320|ref|YP_003850467.1| - 3.3e-50 169.8 0.2 3.7e-50 169.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) Radical_SAM PF04055.16 gi|304315321|ref|YP_003850468.1| - 1.6e-17 64.2 0.1 3.4e-17 63.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.8 gi|304315321|ref|YP_003850468.1| - 0.003 17.3 0.1 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain DUF429 PF04250.8 gi|304315322|ref|YP_003850469.1| - 5.5e-26 91.1 0.3 6.3e-25 87.6 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Met_10 PF02475.11 gi|304315323|ref|YP_003850470.1| - 1.7e-63 213.8 0.0 2.3e-63 213.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|304315323|ref|YP_003850470.1| - 1e-07 31.9 0.0 3.3e-07 30.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304315323|ref|YP_003850470.1| - 2.2e-07 31.4 0.0 3.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304315323|ref|YP_003850470.1| - 3.1e-06 26.6 0.0 1e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain TRM PF02005.11 gi|304315323|ref|YP_003850470.1| - 1.6e-05 24.0 0.0 1.9e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|304315323|ref|YP_003850470.1| - 0.00045 19.8 0.0 0.00058 19.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|304315323|ref|YP_003850470.1| - 0.00054 19.5 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_21 PF05050.7 gi|304315323|ref|YP_003850470.1| - 0.0021 18.0 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain tRNA_U5-meth_tr PF05958.6 gi|304315323|ref|YP_003850470.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF1297 PF06973.7 gi|304315324|ref|YP_003850471.1| - 2.4e-84 281.3 0.0 3.1e-84 280.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|304315324|ref|YP_003850471.1| - 2.1e-54 182.5 0.0 3.3e-54 181.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|304315324|ref|YP_003850471.1| - 0.0009 19.0 0.0 0.0069 16.1 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|304315324|ref|YP_003850471.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Proteasome PF00227.21 gi|304315325|ref|YP_003850472.1| - 1.5e-59 200.5 0.8 1.7e-59 200.3 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|304315326|ref|YP_003850473.1| - 1.1e-32 112.6 0.0 4.2e-32 110.7 0.0 2.1 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|304315326|ref|YP_003850473.1| - 4.8e-24 85.0 2.9 8.3e-24 84.3 2.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|304315326|ref|YP_003850473.1| - 3.7e-13 49.0 0.0 2.7e-12 46.2 0.0 2.5 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|304315326|ref|YP_003850473.1| - 2.8e-10 40.0 0.6 7.3e-10 38.7 0.3 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|304315326|ref|YP_003850473.1| - 0.00021 20.7 11.0 0.0018 17.8 0.4 3.1 1 1 2 3 3 3 2 KH domain Lactamase_B_3 PF13483.1 gi|304315326|ref|YP_003850473.1| - 0.0014 18.3 0.4 0.01 15.5 0.3 2.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|304315326|ref|YP_003850473.1| - 0.0076 15.8 0.9 0.0076 15.8 0.6 2.5 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|304315326|ref|YP_003850473.1| - 0.026 14.1 0.1 0.069 12.7 0.1 1.8 1 0 0 1 1 1 0 KH domain Phage_integrase PF00589.17 gi|304315326|ref|YP_003850473.1| - 0.11 12.1 0.4 6.1 6.4 0.0 2.6 2 0 0 2 2 2 0 Phage integrase family AIRS_C PF02769.17 gi|304315327|ref|YP_003850474.1| - 1.6e-21 76.9 0.4 5.3e-21 75.2 0.1 2.0 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|304315327|ref|YP_003850474.1| - 2.6e-16 59.6 1.9 5.3e-16 58.6 1.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Ldh_2 PF02615.9 gi|304315328|ref|YP_003850475.1| - 4.1e-136 453.1 0.9 4.6e-136 452.9 0.6 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase TPP_enzyme_N PF02776.13 gi|304315329|ref|YP_003850476.1| - 3.5e-11 42.8 0.1 3.9e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|304315330|ref|YP_003850477.1| - 1.9e-17 63.2 0.0 7e-17 61.4 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNA_pol_B PF00136.16 gi|304315331|ref|YP_003850478.1| - 9.5e-53 179.6 0.0 1.6e-52 178.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|304315331|ref|YP_003850478.1| - 1.4e-41 142.4 0.0 2.2e-41 141.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|304315331|ref|YP_003850478.1| - 1.6e-14 53.9 0.0 2.5e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|304315331|ref|YP_003850478.1| - 2.6e-12 46.8 0.0 5.8e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|304315331|ref|YP_003850478.1| - 0.0051 16.2 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_2 PF03175.8 gi|304315331|ref|YP_003850478.1| - 0.037 12.7 0.0 0.073 11.7 0.0 1.3 1 1 0 1 1 1 0 DNA polymerase type B, organellar and viral PMBR PF09373.5 gi|304315332|ref|YP_003850479.1| - 2.7e-21 74.4 4.0 2.4e-07 30.3 0.1 5.0 4 0 0 4 4 4 4 Pseudomurein-binding repeat PKD PF00801.15 gi|304315332|ref|YP_003850479.1| - 5.2e-11 42.1 3.6 1.4e-10 40.7 2.5 1.7 1 0 0 1 1 1 1 PKD domain CoA_binding_3 PF13727.1 gi|304315333|ref|YP_003850480.1| - 0.026 14.3 6.5 0.99 9.2 0.2 2.1 2 0 0 2 2 2 0 CoA-binding domain Claudin_2 PF13903.1 gi|304315333|ref|YP_003850480.1| - 4.3 6.9 8.7 6.8 6.3 5.9 1.4 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction BacA PF02673.13 gi|304315334|ref|YP_003850481.1| - 0.011 14.8 1.3 0.012 14.8 0.9 1.1 1 0 0 1 1 1 0 Bacitracin resistance protein BacA EmrE PF13536.1 gi|304315334|ref|YP_003850481.1| - 0.2 11.8 4.2 0.23 11.6 2.9 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter Na_Ca_ex PF01699.19 gi|304315334|ref|YP_003850481.1| - 0.42 10.2 5.0 0.45 10.0 3.5 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein DUF4131 PF13567.1 gi|304315334|ref|YP_003850481.1| - 0.5 9.7 4.7 0.53 9.6 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TPR_11 PF13414.1 gi|304315336|ref|YP_003850483.1| - 1.7e-52 174.9 28.4 6.4e-20 70.5 3.6 4.0 1 1 4 5 5 5 4 TPR repeat TPR_1 PF00515.23 gi|304315336|ref|YP_003850483.1| - 7.5e-50 164.6 28.7 4.5e-14 51.3 0.2 6.0 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|304315336|ref|YP_003850483.1| - 2.1e-47 158.9 13.8 3.7e-17 62.0 0.3 3.9 2 1 3 5 5 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304315336|ref|YP_003850483.1| - 1.4e-42 140.1 16.8 2.2e-10 39.6 0.1 5.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|304315336|ref|YP_003850483.1| - 2.2e-30 102.1 26.6 6.7e-09 34.9 0.1 5.9 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304315336|ref|YP_003850483.1| - 3.8e-29 98.4 17.5 1.6e-08 34.1 0.1 5.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304315336|ref|YP_003850483.1| - 3.1e-26 91.3 0.0 5.7e-08 33.2 0.0 4.2 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304315336|ref|YP_003850483.1| - 1.6e-21 74.8 0.0 0.0011 19.4 0.0 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304315336|ref|YP_003850483.1| - 8.2e-21 72.1 1.9 9.2e-05 21.9 0.0 5.3 4 1 1 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|304315336|ref|YP_003850483.1| - 1e-20 73.3 0.0 1.8e-07 30.9 0.0 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304315336|ref|YP_003850483.1| - 7.3e-17 61.4 6.0 1.9e-07 31.3 0.6 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|304315336|ref|YP_003850483.1| - 7.2e-15 54.9 12.4 3.8e-09 36.5 2.3 2.3 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|304315336|ref|YP_003850483.1| - 2e-14 52.9 4.3 0.012 16.0 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|304315336|ref|YP_003850483.1| - 1.1e-13 50.6 0.0 0.0025 17.6 0.1 4.5 5 0 0 5 5 4 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|304315336|ref|YP_003850483.1| - 2.5e-11 43.2 19.6 0.00099 18.9 0.3 5.1 2 2 3 5 5 5 4 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|304315336|ref|YP_003850483.1| - 3.8e-11 42.4 4.8 0.00029 19.7 0.0 3.2 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|304315336|ref|YP_003850483.1| - 1.2e-09 37.8 18.4 0.0016 18.2 0.3 5.2 4 1 1 5 5 5 3 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|304315336|ref|YP_003850483.1| - 3.1e-07 30.0 10.3 0.42 10.4 0.0 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat DUF3856 PF12968.2 gi|304315336|ref|YP_003850483.1| - 4.8e-06 26.4 0.2 0.044 13.6 0.0 3.4 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|304315336|ref|YP_003850483.1| - 2e-05 23.7 1.6 0.0086 15.1 0.5 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat EST1_DNA_bind PF10373.4 gi|304315336|ref|YP_003850483.1| - 8.8e-05 21.8 0.3 0.17 11.0 0.0 3.8 4 1 1 5 5 5 1 Est1 DNA/RNA binding domain PPR PF01535.15 gi|304315336|ref|YP_003850483.1| - 0.00013 21.6 5.5 4.3 7.5 0.0 5.1 5 0 0 5 5 5 0 PPR repeat Rapsyn_N PF10579.4 gi|304315336|ref|YP_003850483.1| - 0.00084 19.0 3.1 0.41 10.4 0.1 3.7 1 1 3 4 4 4 2 Rapsyn N-terminal myristoylation and linker region RPN7 PF10602.4 gi|304315336|ref|YP_003850483.1| - 0.0013 18.1 7.9 0.057 12.7 0.8 3.3 1 1 2 3 3 3 1 26S proteasome subunit RPN7 FAT PF02259.18 gi|304315336|ref|YP_003850483.1| - 0.0018 17.3 4.9 0.1 11.5 0.1 2.7 1 1 2 3 3 3 2 FAT domain Paf67 PF10255.4 gi|304315336|ref|YP_003850483.1| - 0.0018 17.2 2.8 0.055 12.3 0.1 2.3 1 1 0 2 2 2 1 RNA polymerase I-associated factor PAF67 Sel1 PF08238.7 gi|304315336|ref|YP_003850483.1| - 0.002 18.6 8.9 9.7 6.9 0.4 5.0 5 1 0 5 5 5 0 Sel1 repeat Coatomer_E PF04733.9 gi|304315336|ref|YP_003850483.1| - 0.0099 15.0 1.5 0.084 12.0 0.3 2.1 1 1 1 2 2 2 1 Coatomer epsilon subunit SHNi-TPR PF10516.4 gi|304315336|ref|YP_003850483.1| - 0.027 13.6 3.5 7.3 5.9 0.0 4.3 5 0 0 5 5 5 0 SHNi-TPR TOM20_plant PF06552.7 gi|304315336|ref|YP_003850483.1| - 0.037 13.6 1.0 3.3 7.2 0.0 3.4 1 1 2 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 ChAPs PF09295.5 gi|304315336|ref|YP_003850483.1| - 0.057 12.1 1.1 0.34 9.6 0.3 1.9 1 1 1 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_5 PF12688.2 gi|304315336|ref|YP_003850483.1| - 0.062 13.3 0.0 1.3 9.1 0.0 2.7 1 1 2 3 3 3 0 Tetratrico peptide repeat Peptidase_C39 PF03412.10 gi|304315336|ref|YP_003850483.1| - 0.073 12.8 4.7 0.86 9.4 0.2 2.2 1 1 1 2 2 2 0 Peptidase C39 family Alkyl_sulf_dimr PF14863.1 gi|304315336|ref|YP_003850483.1| - 0.1 12.8 3.6 8.6 6.5 0.0 3.1 1 1 3 4 4 4 0 Alkyl sulfatase dimerisation DUF627 PF04781.7 gi|304315336|ref|YP_003850483.1| - 0.14 11.7 8.0 2.1 7.9 0.1 3.7 1 1 1 3 3 3 0 Protein of unknown function (DUF627) DUF1033 PF06279.6 gi|304315336|ref|YP_003850483.1| - 0.21 11.3 5.7 5.5 6.8 0.0 3.9 1 1 3 5 5 5 0 Protein of unknown function (DUF1033) IcmL PF11393.3 gi|304315337|ref|YP_003850484.1| - 0.00074 19.4 0.0 0.0047 16.8 0.0 2.2 1 1 2 3 3 3 1 Macrophage killing protein with similarity to conjugation protein Prenyltrans_2 PF13249.1 gi|304315337|ref|YP_003850484.1| - 0.0025 18.2 0.0 0.43 10.9 0.0 2.1 1 1 1 2 2 2 2 Prenyltransferase-like DUF1320 PF07030.7 gi|304315337|ref|YP_003850484.1| - 0.025 14.2 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) TPR_1 PF00515.23 gi|304315338|ref|YP_003850485.1| - 8.7e-112 360.6 50.3 1.2e-13 50.0 0.2 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|304315338|ref|YP_003850485.1| - 1.5e-92 303.6 36.1 1.3e-15 57.0 0.3 6.8 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|304315338|ref|YP_003850485.1| - 9.6e-92 293.7 42.4 6.2e-11 41.3 0.7 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|304315338|ref|YP_003850485.1| - 1.3e-87 287.4 33.5 1.2e-20 72.9 4.3 5.4 3 1 0 5 5 5 5 TPR repeat TPR_8 PF13181.1 gi|304315338|ref|YP_003850485.1| - 4.4e-73 235.7 37.8 3.7e-09 35.7 0.3 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_17 PF13431.1 gi|304315338|ref|YP_003850485.1| - 1e-67 218.7 35.4 1e-07 31.5 0.3 10.3 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_16 PF13432.1 gi|304315338|ref|YP_003850485.1| - 1.3e-59 197.7 8.2 6.5e-13 48.9 0.0 6.6 4 3 2 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|304315338|ref|YP_003850485.1| - 4.9e-51 166.5 18.7 2.5e-05 23.7 0.0 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_14 PF13428.1 gi|304315338|ref|YP_003850485.1| - 5.8e-51 166.3 8.9 6.8e-06 26.2 0.1 10.1 1 1 9 10 10 10 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|304315338|ref|YP_003850485.1| - 5.1e-41 138.8 21.5 1.9e-10 40.8 0.3 6.0 4 1 0 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|304315338|ref|YP_003850485.1| - 4.8e-37 125.6 2.8 6.3e-08 32.3 0.0 6.5 1 1 4 7 7 7 6 Tetratricopeptide repeat TPR_10 PF13374.1 gi|304315338|ref|YP_003850485.1| - 1.4e-34 116.9 8.5 0.00047 19.9 0.1 10.0 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_6 PF13174.1 gi|304315338|ref|YP_003850485.1| - 1.5e-28 97.2 12.4 0.0011 19.2 0.1 9.5 10 0 0 10 10 9 6 Tetratricopeptide repeat MIT PF04212.13 gi|304315338|ref|YP_003850485.1| - 1.6e-26 91.9 35.2 0.00045 20.0 0.4 10.0 6 3 4 10 10 10 7 MIT (microtubule interacting and transport) domain Apc3 PF12895.2 gi|304315338|ref|YP_003850485.1| - 1.1e-25 89.5 27.2 7.8e-09 35.5 5.1 4.9 2 2 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_5 PF12688.2 gi|304315338|ref|YP_003850485.1| - 6.5e-19 68.1 0.2 1.1e-06 28.7 0.0 4.8 2 2 3 5 5 5 3 Tetratrico peptide repeat NARP1 PF12569.3 gi|304315338|ref|YP_003850485.1| - 4.2e-17 62.1 11.5 0.0025 16.6 0.0 5.2 1 1 4 5 5 5 5 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|304315338|ref|YP_003850485.1| - 1.1e-14 54.5 8.9 0.062 13.1 0.1 7.2 1 1 6 7 7 7 6 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|304315338|ref|YP_003850485.1| - 3.5e-13 49.2 10.7 0.00033 19.8 0.3 5.6 1 1 4 5 5 5 4 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|304315338|ref|YP_003850485.1| - 3.7e-13 49.3 9.6 0.015 14.5 0.5 5.4 1 1 4 5 5 5 5 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|304315338|ref|YP_003850485.1| - 7e-12 45.0 34.7 0.011 15.5 0.0 8.3 7 3 3 10 10 8 3 Fis1 C-terminal tetratricopeptide repeat RPN7 PF10602.4 gi|304315338|ref|YP_003850485.1| - 1.7e-08 34.0 17.0 0.14 11.5 1.0 6.2 1 1 4 6 6 6 3 26S proteasome subunit RPN7 PPR PF01535.15 gi|304315338|ref|YP_003850485.1| - 3.4e-07 29.7 21.0 2 8.5 0.1 9.7 10 0 0 10 10 10 1 PPR repeat FAT PF02259.18 gi|304315338|ref|YP_003850485.1| - 1.5e-06 27.4 20.9 0.25 10.2 0.2 6.5 1 1 4 5 5 5 3 FAT domain Rapsyn_N PF10579.4 gi|304315338|ref|YP_003850485.1| - 2e-05 24.2 4.1 0.065 13.0 0.1 5.4 2 1 5 7 7 7 1 Rapsyn N-terminal myristoylation and linker region UPF0122 PF04297.9 gi|304315338|ref|YP_003850485.1| - 2.8e-05 24.0 19.4 1.5 8.9 0.0 7.6 2 2 7 9 9 9 2 Putative helix-turn-helix protein, YlxM / p13 like BTAD PF03704.12 gi|304315338|ref|YP_003850485.1| - 4.1e-05 23.9 5.0 1.2 9.4 0.0 5.0 2 1 1 4 4 4 1 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|304315338|ref|YP_003850485.1| - 5.7e-05 23.1 7.7 0.12 12.5 0.0 4.7 1 1 3 5 5 5 1 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|304315338|ref|YP_003850485.1| - 8.4e-05 21.7 23.8 0.14 11.4 0.0 8.0 9 0 0 9 9 8 1 SHNi-TPR Sel1 PF08238.7 gi|304315338|ref|YP_003850485.1| - 0.00041 20.8 32.6 14 6.4 0.7 10.0 8 3 2 11 11 9 0 Sel1 repeat DUF627 PF04781.7 gi|304315338|ref|YP_003850485.1| - 0.0005 19.6 5.4 0.056 13.0 0.1 4.2 4 1 2 6 6 6 1 Protein of unknown function (DUF627) TPR_4 PF07721.9 gi|304315338|ref|YP_003850485.1| - 0.00088 19.4 0.0 32 5.3 0.0 5.7 7 0 0 7 7 5 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|304315338|ref|YP_003850485.1| - 0.0061 15.3 7.7 0.12 11.0 0.0 4.1 1 1 4 6 6 6 1 ChAPs (Chs5p-Arf1p-binding proteins) Bac_chlorC PF02043.12 gi|304315338|ref|YP_003850485.1| - 0.011 15.4 0.0 21 4.9 0.0 3.6 3 2 1 4 4 4 0 Bacteriochlorophyll C binding protein PRTase_1 PF11202.3 gi|304315338|ref|YP_003850485.1| - 0.015 14.3 0.0 13 4.6 0.0 3.9 3 1 0 4 4 4 0 Phosphoribosyl transferase (PRTase) TPR_3 PF07720.7 gi|304315338|ref|YP_003850485.1| - 0.02 14.7 19.6 6.8 6.6 0.1 7.1 8 0 0 8 8 6 0 Tetratricopeptide repeat Thg1C PF14413.1 gi|304315338|ref|YP_003850485.1| - 0.036 13.7 11.8 0.77 9.4 0.4 4.3 1 1 2 4 4 4 0 Thg1 C terminal domain PPTA PF01239.17 gi|304315338|ref|YP_003850485.1| - 0.049 13.0 9.7 24 4.4 0.0 7.1 8 0 0 8 8 8 0 Protein prenyltransferase alpha subunit repeat APP_E2 PF12925.2 gi|304315338|ref|YP_003850485.1| - 0.061 12.8 12.5 0.31 10.6 0.4 5.4 3 2 4 7 7 6 0 E2 domain of amyloid precursor protein Ribosomal_S16 PF00886.14 gi|304315338|ref|YP_003850485.1| - 0.098 12.3 12.8 20 4.9 0.4 6.0 1 1 3 4 4 4 0 Ribosomal protein S16 BPS PF08947.5 gi|304315338|ref|YP_003850485.1| - 0.1 12.2 0.5 30 4.3 0.0 3.6 4 0 0 4 4 2 0 BPS (Between PH and SH2) Sigma54_activ_2 PF14532.1 gi|304315338|ref|YP_003850485.1| - 0.11 12.5 0.4 42 4.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain SAICAR_synt PF01259.13 gi|304315338|ref|YP_003850485.1| - 0.23 10.5 2.0 16 4.4 0.0 3.2 3 2 1 5 5 4 0 SAICAR synthetase Mqo PF06039.10 gi|304315338|ref|YP_003850485.1| - 0.24 9.5 3.6 18 3.3 0.1 3.5 2 2 2 4 4 4 0 Malate:quinone oxidoreductase (Mqo) Pepsin-I3 PF06394.8 gi|304315338|ref|YP_003850485.1| - 0.29 10.8 5.7 40 3.9 0.0 5.0 6 0 0 6 6 5 0 Pepsin inhibitor-3-like repeated domain CotJB PF12652.2 gi|304315338|ref|YP_003850485.1| - 0.5 10.4 8.0 22 5.1 0.1 4.8 4 2 1 5 5 4 0 CotJB protein SPOB_a PF14689.1 gi|304315338|ref|YP_003850485.1| - 0.94 9.0 18.5 13 5.4 0.0 7.6 9 0 0 9 9 8 0 Sensor_kinase_SpoOB-type, alpha-helical domain PTH2 PF01981.11 gi|304315338|ref|YP_003850485.1| - 0.98 9.1 11.6 6.3 6.5 0.0 4.7 4 1 1 5 5 5 0 Peptidyl-tRNA hydrolase PTH2 Rifin_STEVOR PF02009.11 gi|304315340|ref|YP_003850487.1| - 0.99 8.9 4.4 1.1 8.8 3.0 1.1 1 0 0 1 1 1 0 Rifin/stevor family UPF0118 PF01594.11 gi|304315341|ref|YP_003850488.1| - 2.2e-65 220.7 36.3 2.9e-65 220.3 25.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF1352 PF07086.7 gi|304315341|ref|YP_003850488.1| - 0.3 10.7 4.0 0.75 9.3 2.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) PRT_C PF08372.5 gi|304315341|ref|YP_003850488.1| - 0.48 9.9 5.3 9.5 5.7 1.6 2.5 2 1 0 2 2 2 0 Plant phosphoribosyltransferase C-terminal DHODB_Fe-S_bind PF10418.4 gi|304315342|ref|YP_003850489.1| - 6.9e-13 47.8 5.8 1.5e-12 46.7 4.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|304315342|ref|YP_003850489.1| - 7.1e-13 49.0 0.1 1.1e-12 48.5 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|304315342|ref|YP_003850489.1| - 5.8e-08 32.7 0.0 1.2e-07 31.8 0.0 1.5 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain DHO_dh PF01180.16 gi|304315343|ref|YP_003850490.1| - 5.1e-71 239.0 0.3 5.7e-71 238.8 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|304315343|ref|YP_003850490.1| - 1.6e-15 56.7 0.1 5.9e-12 45.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|304315343|ref|YP_003850490.1| - 2.7e-08 33.3 2.0 1.9e-07 30.5 0.4 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|304315343|ref|YP_003850490.1| - 0.0003 20.1 0.0 0.0016 17.7 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|304315343|ref|YP_003850490.1| - 0.0054 15.6 0.9 0.011 14.6 0.4 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|304315343|ref|YP_003850490.1| - 0.011 14.6 0.1 0.037 12.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF561) PcrB PF01884.12 gi|304315343|ref|YP_003850490.1| - 0.029 13.5 0.5 1.1 8.4 0.0 2.4 2 0 0 2 2 2 0 PcrB family FMN_dh PF01070.13 gi|304315343|ref|YP_003850490.1| - 0.059 12.2 0.4 0.12 11.1 0.3 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Nop PF01798.13 gi|304315344|ref|YP_003850491.1| - 6.2e-54 181.3 0.0 1.2e-53 180.3 0.0 1.5 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|304315344|ref|YP_003850491.1| - 1.1e-19 69.9 0.0 2e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 NOSIC (NUC001) domain Prefoldin_2 PF01920.15 gi|304315344|ref|YP_003850491.1| - 0.13 12.0 0.1 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 Prefoldin subunit Fibrillarin PF01269.12 gi|304315345|ref|YP_003850492.1| - 4e-89 297.4 0.0 4.4e-89 297.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DFP PF04127.10 gi|304315346|ref|YP_003850493.1| - 3e-57 193.2 0.5 2.4e-55 187.0 0.0 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|304315346|ref|YP_003850493.1| - 1.1e-23 83.2 1.1 4.4e-23 81.3 0.4 2.0 2 0 0 2 2 2 1 Flavoprotein Usp PF00582.21 gi|304315346|ref|YP_003850493.1| - 0.03 14.5 1.5 1.2 9.2 0.0 3.0 3 1 1 4 4 4 0 Universal stress protein family Pput2613-deam PF14427.1 gi|304315346|ref|YP_003850493.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.6 1 1 0 1 1 1 0 Pput_2613-like deaminase NAD_binding_10 PF13460.1 gi|304315346|ref|YP_003850493.1| - 0.29 11.1 2.3 2.7 7.9 0.6 3.0 3 1 0 3 3 3 0 NADH(P)-binding KH_5 PF13184.1 gi|304315347|ref|YP_003850494.1| - 7e-16 57.7 1.7 7e-16 57.7 1.2 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|304315347|ref|YP_003850494.1| - 8.4e-06 25.3 3.7 5.2e-05 22.8 1.2 2.3 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|304315347|ref|YP_003850494.1| - 0.00058 19.4 2.0 0.0013 18.3 0.6 2.1 2 0 0 2 2 2 1 KH domain Ribosomal_S7e PF01251.13 gi|304315347|ref|YP_003850494.1| - 0.0011 18.4 0.3 0.003 17.0 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein S7e KH_2 PF07650.12 gi|304315347|ref|YP_003850494.1| - 0.0037 16.7 8.2 0.017 14.6 5.7 2.2 1 1 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|304315347|ref|YP_003850494.1| - 0.008 15.8 3.3 0.013 15.1 0.3 2.7 3 0 0 3 3 3 1 KH domain ParG PF09274.5 gi|304315347|ref|YP_003850494.1| - 0.13 12.2 0.1 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 ParG PsbP PF01789.11 gi|304315348|ref|YP_003850495.1| - 0.0057 16.1 0.2 0.45 9.9 0.2 2.1 1 1 0 1 1 1 1 PsbP Phytochelatin PF05023.9 gi|304315348|ref|YP_003850495.1| - 0.035 13.0 0.1 0.17 10.8 0.1 1.8 1 1 0 1 1 1 0 Phytochelatin synthase DUF1795 PF08786.6 gi|304315348|ref|YP_003850495.1| - 0.045 13.5 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1795) DMAP_binding PF06464.6 gi|304315349|ref|YP_003850496.1| - 0.0022 18.5 7.9 0.0041 17.6 5.5 1.4 1 0 0 1 1 1 1 DMAP1-binding Domain GvpG PF05120.7 gi|304315349|ref|YP_003850496.1| - 0.0079 15.9 1.3 0.0079 15.9 0.9 1.7 2 0 0 2 2 2 1 Gas vesicle protein G FtsH_ext PF06480.10 gi|304315349|ref|YP_003850496.1| - 0.014 15.5 3.4 0.016 15.3 1.2 1.8 2 0 0 2 2 2 0 FtsH Extracellular Bombinin PF05298.6 gi|304315349|ref|YP_003850496.1| - 0.048 13.1 0.8 0.066 12.6 0.5 1.2 1 0 0 1 1 1 0 Bombinin PAP_PilO PF06864.7 gi|304315349|ref|YP_003850496.1| - 0.09 11.1 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Pilin accessory protein (PilO) Cortex-I_coil PF09304.5 gi|304315349|ref|YP_003850496.1| - 0.24 11.4 8.5 0.35 10.9 5.9 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil AJAP1_PANP_C PF15298.1 gi|304315349|ref|YP_003850496.1| - 0.41 10.4 15.0 0.66 9.8 10.4 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus PDT PF00800.13 gi|304315350|ref|YP_003850497.1| - 3.6e-55 186.3 0.0 4.5e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|304315350|ref|YP_003850497.1| - 2.5e-11 42.8 0.0 4.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 ACT domain DNA_ligase_A_M PF01068.16 gi|304315351|ref|YP_003850498.1| - 4.9e-25 88.1 0.0 1e-24 87.0 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|304315351|ref|YP_003850498.1| - 0.0025 17.6 0.0 0.011 15.4 0.0 2.0 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|304315352|ref|YP_003850499.1| - 7.7e-54 179.2 13.0 2e-13 49.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|304315353|ref|YP_003850500.1| - 9.4e-60 198.1 13.1 1.8e-17 62.8 0.2 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|304315354|ref|YP_003850501.1| - 1.9e-64 213.1 10.6 3.9e-18 64.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|304315355|ref|YP_003850502.1| - 2.7e-46 155.0 5.9 3e-14 52.5 0.0 4.3 4 1 0 4 4 4 4 CBS domain UPF0014 PF03649.8 gi|304315355|ref|YP_003850502.1| - 0.07 12.2 0.1 0.099 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0014) CBS PF00571.23 gi|304315356|ref|YP_003850503.1| - 1.8e-29 101.2 1.6 7.2e-14 51.2 0.1 2.2 2 0 0 2 2 2 2 CBS domain RRN7 PF11781.3 gi|304315356|ref|YP_003850503.1| - 0.013 15.0 5.2 0.021 14.3 3.6 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|304315356|ref|YP_003850503.1| - 0.83 9.0 6.4 1.1 8.6 3.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|304315356|ref|YP_003850503.1| - 1.3 8.7 5.2 15 5.3 3.6 2.0 1 1 0 1 1 1 0 HIT zinc finger Radical_SAM PF04055.16 gi|304315357|ref|YP_003850504.1| - 8.1e-17 61.8 0.0 1.1e-16 61.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|304315357|ref|YP_003850504.1| - 5.2e-16 58.7 0.0 7.9e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|304315357|ref|YP_003850504.1| - 2e-12 47.3 0.0 2.8e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|304315358|ref|YP_003850505.1| - 2.8e-28 98.0 0.0 3.4e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF366 PF04017.7 gi|304315359|ref|YP_003850506.1| - 1.3e-67 226.6 0.3 1.4e-67 226.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) DUF296 PF03479.10 gi|304315360|ref|YP_003850507.1| - 9.5e-20 70.4 1.7 1.1e-19 70.2 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) NTP_transf_2 PF01909.18 gi|304315361|ref|YP_003850508.1| - 0.00041 20.6 0.0 0.001 19.3 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain NosD PF05048.8 gi|304315362|ref|YP_003850509.1| - 1.5e-57 194.4 97.9 6.2e-38 130.2 23.1 2.7 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Big_5 PF13205.1 gi|304315362|ref|YP_003850509.1| - 3.6e-24 85.4 15.9 1.3e-12 48.2 1.0 3.6 3 1 1 4 4 4 2 Bacterial Ig-like domain Beta_helix PF13229.1 gi|304315362|ref|YP_003850509.1| - 7.1e-22 77.8 77.5 7.2e-17 61.5 23.5 3.4 3 1 1 4 4 4 2 Right handed beta helix region Big_5 PF13205.1 gi|304315363|ref|YP_003850510.1| - 1.1e-26 93.4 29.6 4.4e-15 56.2 1.7 4.6 2 1 1 4 4 4 2 Bacterial Ig-like domain NosD PF05048.8 gi|304315363|ref|YP_003850510.1| - 5.4e-13 48.6 22.3 5.4e-13 48.6 15.5 2.3 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) CopC PF04234.7 gi|304315363|ref|YP_003850510.1| - 9.3e-06 26.1 0.0 2.1 9.0 0.0 3.4 3 0 0 3 3 3 3 CopC domain NosD PF05048.8 gi|304315364|ref|YP_003850511.1| - 1.9e-09 37.0 8.9 2.2e-09 36.8 6.2 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|304315364|ref|YP_003850511.1| - 1.3e-07 31.5 22.4 3.4e-07 30.1 15.5 1.8 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.6 gi|304315364|ref|YP_003850511.1| - 6.9e-05 22.0 7.5 0.003 16.7 5.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Homoserine_dh PF00742.14 gi|304315365|ref|YP_003850512.1| - 8.5e-62 207.9 0.0 1.6e-61 207.0 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|304315365|ref|YP_003850512.1| - 5.4e-23 81.6 0.0 9.1e-23 80.8 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.20 gi|304315365|ref|YP_003850512.1| - 1.3e-13 50.0 0.0 3.7e-13 48.6 0.0 1.8 1 0 0 1 1 1 1 ACT domain GFO_IDH_MocA PF01408.17 gi|304315365|ref|YP_003850512.1| - 0.00041 20.8 0.0 0.00096 19.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ACT_4 PF13291.1 gi|304315365|ref|YP_003850512.1| - 0.0038 17.5 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain Saccharop_dh PF03435.13 gi|304315365|ref|YP_003850512.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Cas_Cas4 PF01930.12 gi|304315366|ref|YP_003850513.1| - 5.3e-09 36.2 0.0 7.4e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|304315366|ref|YP_003850513.1| - 0.0013 18.2 0.0 0.003 16.9 0.0 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Ku_C PF03730.9 gi|304315367|ref|YP_003850514.1| - 0.081 13.4 0.3 0.098 13.1 0.2 1.2 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm SAS4 PF15460.1 gi|304315367|ref|YP_003850514.1| - 0.12 12.2 0.2 0.17 11.8 0.2 1.2 1 0 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 ACT PF01842.20 gi|304315368|ref|YP_003850515.1| - 8.8e-11 41.0 0.5 7.5e-10 38.0 0.0 2.6 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|304315368|ref|YP_003850515.1| - 1.8e-09 37.7 1.4 7.8e-09 35.7 0.1 2.2 2 0 0 2 2 2 1 ACT domain StbA PF06406.6 gi|304315368|ref|YP_003850515.1| - 0.0085 15.0 0.3 0.0085 15.0 0.2 1.6 2 0 0 2 2 2 1 StbA protein Transketolase_C PF02780.15 gi|304315368|ref|YP_003850515.1| - 0.034 14.0 1.0 0.081 12.8 0.2 2.0 1 1 1 2 2 2 0 Transketolase, C-terminal domain Ehbp PF10622.4 gi|304315369|ref|YP_003850516.1| - 2.3e-40 136.4 0.4 2.5e-40 136.2 0.3 1.0 1 0 0 1 1 1 1 Energy-converting hydrogenase B subunit P (EhbP) NADHdh PF00146.16 gi|304315370|ref|YP_003850517.1| - 1.3e-10 40.8 18.6 1.4e-06 27.6 5.5 2.0 2 0 0 2 2 2 2 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|304315371|ref|YP_003850518.1| - 3e-27 95.2 0.1 4.4e-25 88.2 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|304315371|ref|YP_003850518.1| - 3.2e-18 65.8 0.2 2e-13 49.9 0.0 3.3 3 1 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|304315372|ref|YP_003850519.1| - 4.9e-26 90.8 1.1 6e-26 90.5 0.8 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|304315373|ref|YP_003850520.1| - 1.1e-10 40.6 11.9 4.3e-05 22.9 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315373|ref|YP_003850520.1| - 2e-10 40.8 6.7 3.2e-10 40.2 4.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315373|ref|YP_003850520.1| - 6.9e-10 39.0 6.2 1.2e-09 38.3 4.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|304315373|ref|YP_003850520.1| - 3.2e-09 36.4 4.7 0.00032 20.4 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304315373|ref|YP_003850520.1| - 4.9e-09 35.9 6.4 0.00013 21.7 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|304315373|ref|YP_003850520.1| - 6.6e-08 32.7 1.2 0.01 16.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315373|ref|YP_003850520.1| - 2.4e-07 30.5 11.1 7.1e-05 22.8 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|304315373|ref|YP_003850520.1| - 3.8e-07 30.4 3.0 0.0017 18.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315373|ref|YP_003850520.1| - 5.2e-07 29.6 30.6 8e-05 22.5 8.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315373|ref|YP_003850520.1| - 6.3e-07 28.9 12.0 0.0012 18.6 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315373|ref|YP_003850520.1| - 3.5e-06 27.6 7.6 8.2e-06 26.4 5.4 1.6 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304315373|ref|YP_003850520.1| - 1.5e-05 24.6 13.7 0.0026 17.5 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|304315373|ref|YP_003850520.1| - 0.005 17.3 18.9 0.0051 17.2 5.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|304315373|ref|YP_003850520.1| - 0.031 14.6 7.9 0.97 9.8 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|304315373|ref|YP_003850520.1| - 0.048 14.2 5.2 0.63 10.6 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|304315374|ref|YP_003850521.1| - 2e-72 236.1 144.4 2.9e-08 32.9 1.6 14.8 14 1 0 14 14 14 13 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315374|ref|YP_003850521.1| - 1.1e-55 185.8 113.9 8.1e-11 42.1 6.0 9.4 6 3 4 10 10 10 10 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315374|ref|YP_003850521.1| - 2e-50 166.5 143.3 1.6e-06 27.7 1.5 14.2 14 0 0 14 14 14 14 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315374|ref|YP_003850521.1| - 1.8e-45 152.5 125.7 2e-09 37.1 7.9 10.1 3 2 8 12 12 12 12 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315374|ref|YP_003850521.1| - 1.1e-44 150.5 117.3 2.3e-09 37.3 5.7 9.3 7 1 2 9 9 9 9 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315374|ref|YP_003850521.1| - 3.5e-41 139.7 98.4 0.00022 21.8 0.8 14.1 14 0 0 14 14 14 14 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304315374|ref|YP_003850521.1| - 6.7e-41 135.8 135.7 8.4e-06 25.4 1.9 14.2 14 0 0 14 14 14 13 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315374|ref|YP_003850521.1| - 3.6e-36 122.8 115.9 5.2e-09 35.8 6.7 10.2 6 3 3 10 10 10 10 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|304315374|ref|YP_003850521.1| - 1.1e-29 102.1 113.7 9.4e-08 31.9 2.6 10.2 3 2 7 12 12 12 9 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315374|ref|YP_003850521.1| - 1.4e-25 87.3 142.7 0.00075 19.6 1.4 14.2 14 0 0 14 14 14 12 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304315374|ref|YP_003850521.1| - 3.2e-21 75.4 116.9 7.3e-07 29.4 1.6 12.8 4 4 11 15 15 15 10 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315374|ref|YP_003850521.1| - 2e-17 62.2 165.9 0.0034 17.8 2.7 14.2 14 0 0 14 14 14 10 4Fe-4S binding domain Fer4_11 PF13247.1 gi|304315374|ref|YP_003850521.1| - 1.1e-16 60.4 71.0 1.6e-05 24.7 0.4 7.3 4 3 3 7 7 7 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315374|ref|YP_003850521.1| - 5.8e-11 42.6 135.8 0.01 16.2 1.0 14.1 7 3 7 14 14 14 9 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304315374|ref|YP_003850521.1| - 2e-06 28.0 127.2 0.0014 19.0 1.4 13.8 14 0 0 14 14 13 6 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|304315374|ref|YP_003850521.1| - 6.5e-06 26.6 130.0 0.0025 18.3 0.8 14.1 8 5 4 12 12 11 6 4Fe-4S single cluster domain DUF1275 PF06912.6 gi|304315375|ref|YP_003850522.1| - 0.00035 19.8 0.9 0.00038 19.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) Bax1-I PF01027.15 gi|304315375|ref|YP_003850522.1| - 0.1 12.1 2.2 0.11 12.1 1.5 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 MnhB PF04039.8 gi|304315376|ref|YP_003850523.1| - 3.7e-37 127.1 14.7 4.4e-37 126.9 10.2 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter MnhB PF04039.8 gi|304315377|ref|YP_003850524.1| - 1.6e-07 31.4 3.4 2e-07 31.1 2.4 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Class_IIIsignal PF04021.7 gi|304315377|ref|YP_003850524.1| - 1.6 8.5 5.9 0.17 11.6 0.7 2.0 2 0 0 2 2 2 0 Class III signal peptide GPI2 PF06432.6 gi|304315378|ref|YP_003850525.1| - 0.0013 18.1 0.5 0.0014 18.0 0.3 1.0 1 0 0 1 1 1 1 Phosphatidylinositol N-acetylglucosaminyltransferase ABC2_membrane_5 PF13346.1 gi|304315378|ref|YP_003850525.1| - 0.13 11.5 6.2 0.17 11.1 4.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein PRA1 PF03208.14 gi|304315378|ref|YP_003850525.1| - 0.93 8.8 6.1 1.1 8.5 4.2 1.1 1 0 0 1 1 1 0 PRA1 family protein Oxidored_q1 PF00361.15 gi|304315379|ref|YP_003850526.1| - 3e-28 98.8 21.5 3e-28 98.8 14.9 2.5 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|304315379|ref|YP_003850526.1| - 1.2e-06 27.8 9.0 1.2e-06 27.8 6.3 1.9 1 1 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|304315380|ref|YP_003850527.1| - 1.6e-19 69.2 5.8 1.9e-19 69.0 4.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|304315380|ref|YP_003850527.1| - 1.2e-06 28.1 3.3 1.2e-06 28.1 2.3 2.0 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4040 PF13244.1 gi|304315380|ref|YP_003850527.1| - 0.83 9.6 7.8 0.29 11.1 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF4040 PF13244.1 gi|304315381|ref|YP_003850528.1| - 6.1e-18 64.5 7.9 7.2e-18 64.3 5.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2109 PF09882.4 gi|304315381|ref|YP_003850528.1| - 0.033 14.1 6.7 0.043 13.7 4.5 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2109) Peptidase_U4 PF03419.8 gi|304315381|ref|YP_003850528.1| - 0.12 11.4 2.8 0.13 11.2 1.9 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA ABC2_membrane_2 PF12679.2 gi|304315381|ref|YP_003850528.1| - 0.12 11.2 3.7 0.18 10.6 2.6 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein 7TM-7TMR_HD PF07698.6 gi|304315381|ref|YP_003850528.1| - 0.16 11.3 6.8 0.18 11.2 4.7 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase B12D PF06522.6 gi|304315381|ref|YP_003850528.1| - 0.67 9.7 0.1 0.67 9.7 0.0 2.7 2 1 1 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit DUF1614 PF07758.6 gi|304315381|ref|YP_003850528.1| - 0.81 9.3 6.4 5.9 6.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1614) PrgI PF12666.2 gi|304315381|ref|YP_003850528.1| - 1.3 9.2 5.9 1.5 9.0 0.6 2.0 1 1 1 2 2 2 0 PrgI family protein Oxidored_q2 PF00420.19 gi|304315381|ref|YP_003850528.1| - 1.7 8.2 4.5 2.2 7.9 3.1 1.3 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DctQ PF04290.7 gi|304315381|ref|YP_003850528.1| - 2.3 8.0 6.3 11 5.7 4.4 1.9 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component PhaG_MnhG_YufB PF03334.9 gi|304315382|ref|YP_003850529.1| - 1.1e-14 54.2 7.3 2.4e-14 53.1 5.1 1.5 1 1 0 1 1 1 1 Na+/H+ antiporter subunit DUF2109 PF09882.4 gi|304315382|ref|YP_003850529.1| - 9.2e-05 22.3 3.2 0.00012 21.8 2.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) DUF4233 PF14017.1 gi|304315382|ref|YP_003850529.1| - 0.055 13.4 2.7 0.066 13.1 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) MrpF_PhaF PF04066.8 gi|304315383|ref|YP_003850530.1| - 2.1e-15 56.6 4.6 2.1e-15 56.6 3.2 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.4 gi|304315383|ref|YP_003850530.1| - 0.65 9.8 7.1 1.1 9.1 4.8 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) MNHE PF01899.11 gi|304315384|ref|YP_003850531.1| - 1.9e-24 86.0 0.3 2.1e-24 85.9 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF457 PF04307.9 gi|304315385|ref|YP_003850532.1| - 1.5e-20 73.1 28.8 2.2e-19 69.3 19.9 2.0 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|304315385|ref|YP_003850532.1| - 0.1 12.2 0.0 4.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|304315385|ref|YP_003850532.1| - 0.25 10.5 16.0 1.3 8.3 4.0 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) AstE_AspA PF04952.9 gi|304315386|ref|YP_003850533.1| - 7.1e-14 51.3 0.0 2e-13 49.8 0.0 1.6 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|304315386|ref|YP_003850533.1| - 0.00042 20.0 0.0 0.00056 19.6 0.0 1.3 1 1 0 1 1 1 1 Zinc carboxypeptidase Arginosuc_synth PF00764.14 gi|304315387|ref|YP_003850534.1| - 5.8e-180 598.4 0.0 6.6e-180 598.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|304315387|ref|YP_003850534.1| - 8.9e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|304315387|ref|YP_003850534.1| - 0.00015 21.1 0.0 0.00025 20.4 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|304315387|ref|YP_003850534.1| - 0.0078 14.8 0.0 0.012 14.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|304315387|ref|YP_003850534.1| - 0.071 11.9 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 NAD synthase BofA PF07441.6 gi|304315388|ref|YP_003850535.1| - 0.0001 22.1 22.6 0.0002 21.3 15.6 1.5 1 1 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Carb_kinase PF01256.12 gi|304315389|ref|YP_003850536.1| - 3.3e-48 164.0 0.1 4.4e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|304315389|ref|YP_003850536.1| - 1e-45 155.3 1.1 1.2e-44 151.9 0.0 2.3 2 1 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|304315389|ref|YP_003850536.1| - 0.00026 20.2 0.0 0.021 13.9 0.0 2.1 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family DUF498 PF04430.9 gi|304315389|ref|YP_003850536.1| - 0.041 13.4 0.1 0.41 10.2 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) 3H PF02829.9 gi|304315390|ref|YP_003850537.1| - 1.8e-75 249.1 1.7 4.2e-26 90.8 0.0 3.6 3 0 0 3 3 3 3 3H domain TrkA_N PF02254.13 gi|304315390|ref|YP_003850537.1| - 1.5e-33 115.2 0.4 3.3e-32 110.9 0.0 3.0 3 0 0 3 3 3 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|304315390|ref|YP_003850537.1| - 1.1e-12 47.4 14.0 1.9e-12 46.6 9.7 1.4 1 0 0 1 1 1 1 Ion channel YjcQ PF09639.5 gi|304315390|ref|YP_003850537.1| - 0.0014 18.6 0.0 7.7 6.6 0.0 3.6 3 0 0 3 3 3 1 YjcQ protein NAD_binding_7 PF13241.1 gi|304315390|ref|YP_003850537.1| - 0.0019 18.4 0.3 0.01 16.0 0.0 2.3 3 1 0 3 3 3 1 Putative NAD(P)-binding Nif11 PF07862.6 gi|304315390|ref|YP_003850537.1| - 0.01 15.7 0.8 1.5 8.8 0.0 2.9 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function FCD PF07729.7 gi|304315390|ref|YP_003850537.1| - 0.021 15.1 0.0 0.7 10.2 0.0 2.5 2 0 0 2 2 2 0 FCD domain Saccharop_dh PF03435.13 gi|304315390|ref|YP_003850537.1| - 0.046 12.6 0.0 0.073 12.0 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF3969 PF13108.1 gi|304315390|ref|YP_003850537.1| - 0.064 12.9 0.7 12 5.5 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) NAD_binding_10 PF13460.1 gi|304315390|ref|YP_003850537.1| - 0.079 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding UPF0180 PF03698.8 gi|304315390|ref|YP_003850537.1| - 0.11 12.3 0.9 17 5.3 0.0 3.9 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0180) SAS4 PF15460.1 gi|304315390|ref|YP_003850537.1| - 0.16 11.8 1.3 16 5.3 0.1 3.6 3 0 0 3 3 3 0 Something about silencing, SAS, complex subunit 4 FTR_C PF02741.10 gi|304315391|ref|YP_003850538.1| - 8.5e-69 230.0 3.4 8.5e-69 230.0 2.4 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|304315391|ref|YP_003850538.1| - 5.5e-64 214.2 0.0 1.5e-63 212.8 0.0 1.7 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase HisKA_2 PF07568.7 gi|304315392|ref|YP_003850539.1| - 4e-12 45.8 0.1 2.3e-11 43.3 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.5 gi|304315392|ref|YP_003850539.1| - 6.5e-12 45.4 0.0 2.7e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|304315392|ref|YP_003850539.1| - 1.2e-11 44.3 0.0 2.3e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|304315392|ref|YP_003850539.1| - 1.3e-07 31.4 0.0 3e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|304315392|ref|YP_003850539.1| - 4.8e-07 30.0 0.0 3.7e-06 27.2 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|304315392|ref|YP_003850539.1| - 0.0019 17.9 0.0 0.0043 16.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PA28_beta PF02252.13 gi|304315392|ref|YP_003850539.1| - 0.016 14.6 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit CheX PF13690.1 gi|304315392|ref|YP_003850539.1| - 0.049 13.4 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX AAA_27 PF13514.1 gi|304315392|ref|YP_003850539.1| - 0.071 10.7 0.0 0.093 10.3 0.0 1.0 1 0 0 1 1 1 0 AAA domain UPF0104 PF03706.8 gi|304315393|ref|YP_003850540.1| - 1.3e-47 162.5 30.8 1.6e-47 162.1 21.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF3154 PF11351.3 gi|304315393|ref|YP_003850540.1| - 0.11 12.2 9.1 0.11 12.2 0.7 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3154) NhaB PF06450.7 gi|304315393|ref|YP_003850540.1| - 0.14 10.7 17.9 0.0077 14.9 3.8 2.3 2 0 0 2 2 2 0 Bacterial Na+/H+ antiporter B (NhaB) Pex24p PF06398.6 gi|304315393|ref|YP_003850540.1| - 0.45 9.2 3.5 0.73 8.5 2.5 1.3 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin SUR7 PF06687.7 gi|304315393|ref|YP_003850540.1| - 1.8 8.0 8.8 0.059 12.9 0.4 2.5 2 1 1 3 3 3 0 SUR7/PalI family Metallophos_2 PF12850.2 gi|304315394|ref|YP_003850541.1| - 1.1e-22 80.5 0.1 1.4e-22 80.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|304315394|ref|YP_003850541.1| - 7.2e-07 28.8 0.7 0.021 14.2 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|304315394|ref|YP_003850541.1| - 0.0046 16.1 0.2 0.17 11.0 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily TRAM PF01938.15 gi|304315395|ref|YP_003850542.1| - 3.2e-18 65.2 2.0 3.7e-18 65.0 1.4 1.1 1 0 0 1 1 1 1 TRAM domain TrkH PF02386.11 gi|304315396|ref|YP_003850543.1| - 3e-66 223.4 20.5 3e-66 223.4 14.2 2.3 2 0 0 2 2 2 2 Cation transport protein DUF4328 PF14219.1 gi|304315396|ref|YP_003850543.1| - 0.42 9.9 0.0 0.42 9.9 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4328) TrkA_N PF02254.13 gi|304315397|ref|YP_003850544.1| - 2.2e-34 117.8 1.3 4.2e-34 117.0 0.9 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|304315397|ref|YP_003850544.1| - 2.6e-11 42.9 0.3 1.7e-10 40.3 0.0 2.4 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|304315397|ref|YP_003850544.1| - 1.5e-07 31.5 1.0 3.4e-07 30.4 0.1 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|304315397|ref|YP_003850544.1| - 1.9e-05 25.0 0.2 4.8e-05 23.6 0.2 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|304315397|ref|YP_003850544.1| - 0.00011 22.1 1.0 0.00052 19.8 0.3 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.14 gi|304315397|ref|YP_003850544.1| - 0.00032 19.8 0.1 0.00053 19.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|304315397|ref|YP_003850544.1| - 0.0018 17.7 0.1 0.0032 16.9 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|304315397|ref|YP_003850544.1| - 0.0024 17.6 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.1 gi|304315397|ref|YP_003850544.1| - 0.0028 17.6 0.0 0.0066 16.4 0.0 1.6 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|304315397|ref|YP_003850544.1| - 0.0036 16.6 0.6 0.02 14.2 0.2 2.2 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|304315397|ref|YP_003850544.1| - 0.0045 15.9 0.1 0.0074 15.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|304315397|ref|YP_003850544.1| - 0.0068 16.4 0.1 0.0092 16.0 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|304315397|ref|YP_003850544.1| - 0.009 15.6 0.1 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2099 PF09872.4 gi|304315397|ref|YP_003850544.1| - 0.013 14.5 0.5 0.022 13.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2099) ADH_zinc_N PF00107.21 gi|304315397|ref|YP_003850544.1| - 0.015 14.8 0.0 0.031 13.8 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF2220 PF09983.4 gi|304315397|ref|YP_003850544.1| - 0.024 13.8 0.1 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) Pyr_redox_2 PF07992.9 gi|304315397|ref|YP_003850544.1| - 0.059 13.2 0.3 0.21 11.4 0.1 1.9 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|304315397|ref|YP_003850544.1| - 0.071 13.5 1.6 0.14 12.6 0.1 2.3 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|304315397|ref|YP_003850544.1| - 0.077 13.3 0.0 0.11 12.7 0.0 1.4 1 1 0 1 1 1 0 XdhC Rossmann domain Lactamase_B PF00753.22 gi|304315399|ref|YP_003850546.1| - 1.6e-23 83.3 2.8 2.9e-23 82.5 2.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|304315399|ref|YP_003850546.1| - 0.00022 20.8 0.1 0.00055 19.5 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Hjc PF01870.13 gi|304315400|ref|YP_003850547.1| - 7e-31 105.6 0.0 8.5e-31 105.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) zf-ribbon_3 PF13248.1 gi|304315402|ref|YP_003850549.1| - 4.2e-09 35.3 1.3 5.9e-09 34.8 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304315402|ref|YP_003850549.1| - 1.4e-07 30.7 2.9 1.8e-07 30.3 2.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|304315402|ref|YP_003850549.1| - 1.1e-06 28.3 0.3 1.6e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Claudin_2 PF13903.1 gi|304315402|ref|YP_003850549.1| - 0.00017 21.2 0.1 0.00021 21.0 0.0 1.2 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction TctB PF07331.6 gi|304315402|ref|YP_003850549.1| - 0.00063 19.4 1.8 0.00072 19.2 1.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TF_Zn_Ribbon PF08271.7 gi|304315402|ref|YP_003850549.1| - 0.0028 16.9 2.3 0.0065 15.7 1.6 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|304315402|ref|YP_003850549.1| - 0.0036 16.9 1.1 0.58 9.8 0.0 2.4 2 0 0 2 2 2 1 Nudix N-terminal DUF1469 PF07332.6 gi|304315402|ref|YP_003850549.1| - 0.0039 16.9 4.2 0.0047 16.6 2.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) RNA_POL_M_15KD PF02150.11 gi|304315402|ref|YP_003850549.1| - 0.024 14.2 1.6 0.44 10.2 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-tcix PF14952.1 gi|304315402|ref|YP_003850549.1| - 0.077 12.3 2.7 0.14 11.5 1.9 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|304315402|ref|YP_003850549.1| - 0.14 11.2 0.8 0.24 10.5 0.5 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others BRI3BP PF14965.1 gi|304315402|ref|YP_003850549.1| - 0.24 10.7 3.9 0.32 10.3 2.7 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 DUF4341 PF14241.1 gi|304315402|ref|YP_003850549.1| - 0.25 11.0 6.3 0.38 10.4 4.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4341) DUF4293 PF14126.1 gi|304315402|ref|YP_003850549.1| - 0.41 10.5 5.0 0.87 9.4 3.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) UPF0547 PF10571.4 gi|304315402|ref|YP_003850549.1| - 1.1 8.9 4.6 6.1 6.6 3.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|304315402|ref|YP_003850549.1| - 1.3 8.7 3.5 3.8 7.2 2.3 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|304315402|ref|YP_003850549.1| - 1.5 8.4 4.8 5.2 6.6 3.3 1.8 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 stn_TNFRSF12A PF12191.3 gi|304315402|ref|YP_003850549.1| - 3.5 7.6 5.3 4.1 7.4 0.1 2.4 2 1 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Radical_SAM PF04055.16 gi|304315403|ref|YP_003850550.1| - 4.9e-12 46.3 0.0 8.9e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BATS PF06968.8 gi|304315403|ref|YP_003850550.1| - 0.00021 21.0 0.0 0.00054 19.7 0.0 1.8 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain GatB_N PF02934.10 gi|304315404|ref|YP_003850551.1| - 8.6e-95 316.9 0.0 1.2e-94 316.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|304315404|ref|YP_003850551.1| - 3e-42 143.8 1.1 4.6e-42 143.2 0.8 1.3 1 0 0 1 1 1 1 GatB domain DUF504 PF04457.7 gi|304315405|ref|YP_003850552.1| - 1.7e-17 63.2 0.1 2.1e-17 63.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) CBS PF00571.23 gi|304315406|ref|YP_003850553.1| - 2.7e-32 110.2 4.4 2.9e-16 58.9 0.6 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|304315406|ref|YP_003850553.1| - 2.4e-15 56.3 0.0 7.2e-15 54.8 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|304315406|ref|YP_003850553.1| - 1.5e-05 24.8 0.1 0.00018 21.3 0.1 2.2 1 1 0 1 1 1 1 Putative ParB-like nuclease Ubiquitin_2 PF14560.1 gi|304315406|ref|YP_003850553.1| - 0.09 13.0 0.1 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin-like domain PRA-PH PF01503.12 gi|304315407|ref|YP_003850554.1| - 1.4e-12 47.7 0.3 1.6e-12 47.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|304315407|ref|YP_003850554.1| - 0.01 15.7 0.7 0.015 15.2 0.5 1.3 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain ANF_receptor PF01094.23 gi|304315407|ref|YP_003850554.1| - 0.15 10.8 0.1 0.17 10.6 0.0 1.0 1 0 0 1 1 1 0 Receptor family ligand binding region Acetyltransf_1 PF00583.19 gi|304315408|ref|YP_003850555.1| - 2.3e-19 69.2 0.0 3.4e-19 68.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|304315408|ref|YP_003850555.1| - 1e-09 38.4 0.0 3.1e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|304315408|ref|YP_003850555.1| - 1.6e-08 34.6 0.0 6.6e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|304315408|ref|YP_003850555.1| - 1.7e-08 34.4 0.0 2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|304315408|ref|YP_003850555.1| - 9.4e-08 31.7 0.0 1.7e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|304315408|ref|YP_003850555.1| - 0.00011 22.1 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|304315408|ref|YP_003850555.1| - 0.00077 19.6 0.0 0.00087 19.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|304315408|ref|YP_003850555.1| - 0.013 15.4 0.0 0.071 12.9 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|304315408|ref|YP_003850555.1| - 0.027 14.3 0.0 0.066 13.1 0.0 1.6 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|304315408|ref|YP_003850555.1| - 0.059 12.9 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HxlR PF01638.12 gi|304315409|ref|YP_003850556.1| - 3.8e-39 132.2 0.1 4.2e-39 132.0 0.1 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|304315409|ref|YP_003850556.1| - 0.0017 18.0 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|304315409|ref|YP_003850556.1| - 0.0025 17.4 0.1 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|304315409|ref|YP_003850556.1| - 0.0033 17.1 0.0 0.0061 16.3 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.5 gi|304315409|ref|YP_003850556.1| - 0.03 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|304315409|ref|YP_003850556.1| - 0.078 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AIRC PF00731.15 gi|304315410|ref|YP_003850557.1| - 6.9e-24 83.8 2.9 9.8e-24 83.3 2.0 1.2 1 0 0 1 1 1 1 AIR carboxylase Sua5_yciO_yrdC PF01300.13 gi|304315411|ref|YP_003850558.1| - 6.2e-47 159.1 0.0 1.4e-46 158.0 0.0 1.6 2 0 0 2 2 2 1 Telomere recombination zf-HYPF PF07503.7 gi|304315411|ref|YP_003850558.1| - 2e-28 97.4 15.4 2.1e-14 52.5 1.7 2.6 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|304315411|ref|YP_003850558.1| - 3.2e-24 84.8 0.0 8.2e-24 83.5 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|304315411|ref|YP_003850558.1| - 0.00046 19.7 0.1 0.074 12.5 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family BcrAD_BadFG PF01869.15 gi|304315411|ref|YP_003850558.1| - 0.0051 16.1 0.1 0.0097 15.2 0.0 1.4 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DUF1115 PF06544.7 gi|304315411|ref|YP_003850558.1| - 0.025 14.2 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Rad50_zn_hook PF04423.9 gi|304315411|ref|YP_003850558.1| - 3.8 7.0 5.4 4 6.9 1.1 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif HTH_5 PF01022.15 gi|304315412|ref|YP_003850559.1| - 2.2e-15 56.0 0.0 1.6e-14 53.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|304315412|ref|YP_003850559.1| - 2.6e-09 36.7 0.3 6.4e-09 35.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|304315412|ref|YP_003850559.1| - 5.7e-05 22.8 0.0 0.00026 20.6 0.0 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|304315412|ref|YP_003850559.1| - 0.00013 21.3 1.1 0.0012 18.1 0.8 2.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|304315412|ref|YP_003850559.1| - 0.00017 21.1 0.2 0.0005 19.7 0.0 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|304315412|ref|YP_003850559.1| - 0.011 16.0 0.1 0.028 14.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|304315412|ref|YP_003850559.1| - 0.013 15.0 1.3 0.18 11.4 0.0 2.7 3 0 0 3 3 3 0 HTH DNA binding domain HTH_29 PF13551.1 gi|304315412|ref|YP_003850559.1| - 0.014 15.5 0.1 0.028 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HxlR PF01638.12 gi|304315412|ref|YP_003850559.1| - 0.016 14.8 0.1 0.037 13.6 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|304315412|ref|YP_003850559.1| - 0.026 14.2 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family IF2_N PF04760.10 gi|304315412|ref|YP_003850559.1| - 0.028 14.0 0.7 0.069 12.8 0.1 1.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_12 PF08461.5 gi|304315412|ref|YP_003850559.1| - 0.035 13.8 0.1 0.035 13.8 0.1 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_CodY PF08222.6 gi|304315412|ref|YP_003850559.1| - 0.043 13.1 0.4 0.21 10.9 0.0 2.0 1 1 1 2 2 2 0 CodY helix-turn-helix domain HTH_11 PF08279.7 gi|304315412|ref|YP_003850559.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain GrpE PF01025.14 gi|304315413|ref|YP_003850560.1| - 6.3e-42 142.9 7.0 7.7e-42 142.6 4.8 1.1 1 0 0 1 1 1 1 GrpE DUF148 PF02520.12 gi|304315413|ref|YP_003850560.1| - 0.00026 20.7 4.5 0.0005 19.8 3.1 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF148 IncA PF04156.9 gi|304315413|ref|YP_003850560.1| - 0.0058 16.2 11.5 0.0078 15.8 8.0 1.2 1 0 0 1 1 1 1 IncA protein YfiO PF13525.1 gi|304315413|ref|YP_003850560.1| - 0.0092 15.4 0.2 0.013 14.9 0.1 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein DUF812 PF05667.6 gi|304315413|ref|YP_003850560.1| - 0.0097 14.4 6.4 0.013 14.0 4.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Laminin_I PF06008.9 gi|304315413|ref|YP_003850560.1| - 0.035 13.4 6.8 0.046 13.0 4.7 1.2 1 0 0 1 1 1 0 Laminin Domain I COG2 PF06148.6 gi|304315413|ref|YP_003850560.1| - 0.045 13.6 5.9 0.07 12.9 4.1 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaphilin PF15290.1 gi|304315413|ref|YP_003850560.1| - 0.061 12.8 3.3 0.077 12.4 2.3 1.2 1 0 0 1 1 1 0 Golgi-localised syntaxin-1-binding clamp OmpH PF03938.9 gi|304315413|ref|YP_003850560.1| - 0.064 13.1 6.1 0.086 12.7 4.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Atg14 PF10186.4 gi|304315413|ref|YP_003850560.1| - 0.066 12.1 7.6 0.084 11.8 5.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|304315413|ref|YP_003850560.1| - 0.068 12.2 11.9 0.083 11.9 8.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Ribosomal_S6 PF01250.12 gi|304315413|ref|YP_003850560.1| - 0.074 12.9 1.0 0.33 10.8 0.0 2.4 2 1 1 3 3 3 0 Ribosomal protein S6 Surfac_D-trimer PF09006.6 gi|304315413|ref|YP_003850560.1| - 0.09 12.5 0.7 0.34 10.6 0.2 2.0 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation DUF2968 PF11180.3 gi|304315413|ref|YP_003850560.1| - 0.099 12.0 1.8 0.17 11.2 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF2433 PF10360.4 gi|304315413|ref|YP_003850560.1| - 0.11 12.8 0.4 0.16 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2433) Spc7 PF08317.6 gi|304315413|ref|YP_003850560.1| - 0.15 10.6 10.5 0.19 10.3 7.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein WEMBL PF05701.6 gi|304315413|ref|YP_003850560.1| - 0.24 9.8 12.3 0.29 9.5 8.6 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Tropomyosin_1 PF12718.2 gi|304315413|ref|YP_003850560.1| - 0.25 11.1 17.2 0.45 10.3 11.9 1.4 1 1 0 1 1 1 0 Tropomyosin like TBPIP PF07106.8 gi|304315413|ref|YP_003850560.1| - 0.32 10.5 10.8 0.46 10.0 7.5 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4208 PF13907.1 gi|304315413|ref|YP_003850560.1| - 0.35 11.1 6.5 0.67 10.1 4.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) Tho2 PF11262.3 gi|304315413|ref|YP_003850560.1| - 0.35 9.8 6.0 0.48 9.4 4.2 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 CASP_C PF08172.7 gi|304315413|ref|YP_003850560.1| - 0.38 9.7 6.5 0.23 10.4 1.3 2.0 1 1 1 2 2 2 0 CASP C terminal Pox_A_type_inc PF04508.7 gi|304315413|ref|YP_003850560.1| - 0.56 10.1 10.1 0.72 9.8 3.8 3.3 2 1 2 4 4 4 0 Viral A-type inclusion protein repeat V_ATPase_I PF01496.14 gi|304315413|ref|YP_003850560.1| - 0.59 7.9 3.3 0.63 7.8 2.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|304315413|ref|YP_003850560.1| - 0.8 8.0 8.8 1 7.7 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF3552 PF12072.3 gi|304315413|ref|YP_003850560.1| - 0.89 8.7 12.5 1.2 8.3 8.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMPIT PF07851.8 gi|304315413|ref|YP_003850560.1| - 0.98 8.4 6.6 1.2 8.0 4.6 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF2229 PF09989.4 gi|304315413|ref|YP_003850560.1| - 1.1 8.6 7.7 7.9 5.8 5.3 2.0 1 1 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Mit_ribos_Mrp51 PF11709.3 gi|304315413|ref|YP_003850560.1| - 1.4 8.0 3.5 2.4 7.3 2.5 1.4 1 1 0 1 1 1 0 Mitochondrial ribosomal protein subunit Fib_alpha PF08702.5 gi|304315413|ref|YP_003850560.1| - 1.5 8.9 6.3 2.5 8.2 4.3 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1978 PF09321.5 gi|304315413|ref|YP_003850560.1| - 1.5 8.1 15.8 2.1 7.7 4.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) Ead_Ea22 PF13935.1 gi|304315413|ref|YP_003850560.1| - 4.4 7.6 10.8 7.4 6.9 3.3 2.2 1 1 1 2 2 2 0 Ead/Ea22-like protein Prefoldin_2 PF01920.15 gi|304315413|ref|YP_003850560.1| - 5 6.9 17.8 1.3 8.8 6.0 2.7 1 1 2 3 3 3 0 Prefoldin subunit Seryl_tRNA_N PF02403.17 gi|304315413|ref|YP_003850560.1| - 5.4 7.0 13.4 0.19 11.7 2.3 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.13 gi|304315413|ref|YP_003850560.1| - 5.9 5.8 6.8 8.9 5.2 4.7 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF972 PF06156.8 gi|304315413|ref|YP_003850560.1| - 7 7.0 10.5 9.4 6.6 6.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|304315413|ref|YP_003850560.1| - 7.1 6.3 12.5 14 5.4 8.7 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 HSP70 PF00012.15 gi|304315414|ref|YP_003850561.1| - 3.5e-231 768.3 15.7 2.4e-228 758.9 10.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|304315414|ref|YP_003850561.1| - 1.1e-19 70.2 4.6 1.1e-19 70.2 3.2 2.4 2 2 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|304315414|ref|YP_003850561.1| - 2.7e-05 23.8 0.0 5.6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.6 gi|304315414|ref|YP_003850561.1| - 0.00035 19.6 0.3 0.0039 16.1 0.2 2.4 1 1 1 2 2 2 1 StbA protein RNA_pol_Rpb2_2 PF04561.9 gi|304315414|ref|YP_003850561.1| - 0.064 12.6 2.6 0.14 11.6 1.8 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 EndoU_bacteria PF14436.1 gi|304315414|ref|YP_003850561.1| - 0.12 12.1 0.7 0.35 10.7 0.1 2.1 2 0 0 2 2 2 0 Bacterial EndoU nuclease DUF1090 PF06476.7 gi|304315414|ref|YP_003850561.1| - 0.16 11.6 11.6 0.42 10.2 8.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) DUF2664 PF10867.3 gi|304315414|ref|YP_003850561.1| - 4.4 8.0 10.4 0.22 12.1 1.1 3.1 2 2 2 4 4 4 0 Protein of unknown function (DUF2664) DUF45 PF01863.12 gi|304315414|ref|YP_003850561.1| - 7.6 6.2 10.0 11 5.7 5.5 2.3 2 1 0 2 2 2 0 Protein of unknown function DUF45 CTDII PF01556.13 gi|304315415|ref|YP_003850562.1| - 3.6e-37 126.1 2.1 2.2e-25 88.3 0.0 3.4 2 1 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|304315415|ref|YP_003850562.1| - 3.4e-28 97.1 4.1 6e-28 96.3 2.8 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|304315415|ref|YP_003850562.1| - 2.2e-14 53.2 15.7 3.4e-14 52.6 10.9 1.3 1 0 0 1 1 1 1 DnaJ central domain DUF3856 PF12968.2 gi|304315415|ref|YP_003850562.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) DZR PF12773.2 gi|304315415|ref|YP_003850562.1| - 3.2 7.6 12.2 20 5.0 8.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|304315415|ref|YP_003850562.1| - 5.7 7.3 9.7 5.7e+02 0.9 6.8 3.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Phasin PF05597.6 gi|304315417|ref|YP_003850564.1| - 4.5e-05 23.2 1.3 0.00027 20.6 0.0 2.0 2 0 0 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Spc7 PF08317.6 gi|304315417|ref|YP_003850564.1| - 0.0019 16.9 1.8 0.0023 16.6 1.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF948 PF06103.6 gi|304315417|ref|YP_003850564.1| - 0.0067 16.2 3.8 2.1 8.2 0.0 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) NTS_2 PF15448.1 gi|304315417|ref|YP_003850564.1| - 0.0074 16.5 0.5 0.018 15.3 0.3 1.7 1 0 0 1 1 1 1 N-terminal segments of P. falciparum erythrocyte membrane protein HSBP1 PF06825.7 gi|304315417|ref|YP_003850564.1| - 0.0096 15.4 0.0 0.092 12.3 0.0 2.6 1 1 0 1 1 1 1 Heat shock factor binding protein 1 Atg14 PF10186.4 gi|304315417|ref|YP_003850564.1| - 0.019 13.9 0.9 0.021 13.7 0.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FtsH_ext PF06480.10 gi|304315417|ref|YP_003850564.1| - 0.035 14.2 0.0 0.065 13.4 0.0 1.5 1 1 0 1 1 1 0 FtsH Extracellular DUF4446 PF14584.1 gi|304315417|ref|YP_003850564.1| - 0.061 13.1 1.2 0.74 9.6 0.1 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) DUF3563 PF12086.3 gi|304315417|ref|YP_003850564.1| - 0.068 12.9 2.0 0.18 11.6 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3563) NPV_P10 PF05531.7 gi|304315417|ref|YP_003850564.1| - 0.076 13.2 0.3 0.6 10.3 0.0 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Prefoldin_3 PF13758.1 gi|304315417|ref|YP_003850564.1| - 0.16 11.7 3.3 3.1 7.6 0.1 2.3 1 1 1 2 2 2 0 Prefoldin subunit Matrilin_ccoil PF10393.4 gi|304315417|ref|YP_003850564.1| - 0.4 10.0 0.1 0.4 10.0 0.1 2.7 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Syntaxin PF00804.20 gi|304315417|ref|YP_003850564.1| - 0.59 10.3 4.0 5.7 7.1 2.8 2.0 1 1 0 1 1 1 0 Syntaxin Prefoldin_2 PF01920.15 gi|304315417|ref|YP_003850564.1| - 0.73 9.6 5.8 0.46 10.2 0.3 2.1 1 1 1 2 2 2 0 Prefoldin subunit Viral_P18 PF04521.8 gi|304315417|ref|YP_003850564.1| - 0.8 9.1 3.8 5.1 6.5 0.1 2.1 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Pox_A_type_inc PF04508.7 gi|304315417|ref|YP_003850564.1| - 0.97 9.3 9.7 2.4 8.1 0.2 3.1 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat Allexi_40kDa PF05549.6 gi|304315418|ref|YP_003850565.1| - 0.058 12.6 0.6 0.094 12.0 0.1 1.5 1 1 0 1 1 1 0 Allexivirus 40kDa protein Claudin_3 PF06653.6 gi|304315418|ref|YP_003850565.1| - 0.06 13.0 0.2 0.078 12.6 0.1 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF4079 PF13301.1 gi|304315418|ref|YP_003850565.1| - 0.067 13.2 0.1 0.075 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) TMEM154 PF15102.1 gi|304315418|ref|YP_003850565.1| - 0.077 12.6 0.8 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 TMEM154 protein family DUF4094 PF13334.1 gi|304315418|ref|YP_003850565.1| - 0.11 12.9 0.9 0.17 12.3 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4094) DUF4381 PF14316.1 gi|304315418|ref|YP_003850565.1| - 0.17 11.9 2.8 0.24 11.5 1.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) DUF1049 PF06305.6 gi|304315418|ref|YP_003850565.1| - 0.43 10.0 5.0 2.4 7.6 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3827 PF12877.2 gi|304315418|ref|YP_003850565.1| - 0.58 8.1 4.2 0.47 8.4 2.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3827) DUF4145 PF13643.1 gi|304315418|ref|YP_003850565.1| - 0.74 9.7 4.1 3.5 7.5 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4145) DUF4446 PF14584.1 gi|304315418|ref|YP_003850565.1| - 2.1 8.1 7.7 0.58 9.9 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF106 PF01956.11 gi|304315418|ref|YP_003850565.1| - 2.5 7.6 8.5 18 4.8 5.9 2.0 1 1 0 1 1 1 0 Integral membrane protein DUF106 COG2 PF06148.6 gi|304315418|ref|YP_003850565.1| - 3.1 7.6 6.7 11 5.9 4.7 1.9 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 HR1 PF02185.11 gi|304315418|ref|YP_003850565.1| - 3.8 7.3 12.2 0.73 9.6 1.0 2.9 1 1 2 3 3 3 0 Hr1 repeat Vpu PF00558.14 gi|304315418|ref|YP_003850565.1| - 4.7 6.8 7.4 0.4 10.2 1.5 1.9 2 1 0 2 2 2 0 Vpu protein DUF2681 PF10883.3 gi|304315418|ref|YP_003850565.1| - 7.8 6.7 8.8 1.6 8.9 2.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) IncA PF04156.9 gi|304315418|ref|YP_003850565.1| - 8 6.0 14.2 16 5.0 9.8 1.6 1 1 0 1 1 1 0 IncA protein Peptidase_M24 PF00557.19 gi|304315419|ref|YP_003850566.1| - 8.6e-44 149.5 0.0 1.1e-43 149.2 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 FrhB_FdhB_C PF04432.8 gi|304315420|ref|YP_003850567.1| - 6.1e-46 155.7 0.0 8.4e-46 155.3 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|304315420|ref|YP_003850567.1| - 3.8e-31 106.7 0.0 6.3e-31 106.0 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Auxin_inducible PF02519.9 gi|304315420|ref|YP_003850567.1| - 0.053 13.5 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Auxin responsive protein Oxidored_q6 PF01058.17 gi|304315421|ref|YP_003850568.1| - 1.4e-26 92.6 0.1 1.4e-26 92.6 0.1 2.1 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|304315421|ref|YP_003850568.1| - 1.2e-12 46.8 11.1 3.7e-07 29.4 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|304315421|ref|YP_003850568.1| - 1.2e-08 34.4 8.3 0.00061 19.5 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|304315421|ref|YP_003850568.1| - 4.2e-08 32.8 10.3 1.2e-07 31.4 7.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|304315421|ref|YP_003850568.1| - 3.4e-07 30.5 12.0 4.1e-07 30.2 7.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|304315421|ref|YP_003850568.1| - 5.1e-07 29.4 11.6 5.7e-06 26.0 8.2 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315421|ref|YP_003850568.1| - 9.9e-07 28.9 9.9 3.1e-06 27.3 6.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|304315421|ref|YP_003850568.1| - 3e-05 23.6 13.2 0.00086 19.0 1.6 3.3 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|304315421|ref|YP_003850568.1| - 0.0012 19.5 14.8 0.026 15.2 2.4 3.3 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|304315421|ref|YP_003850568.1| - 0.0022 18.5 11.3 0.074 13.6 1.0 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|304315421|ref|YP_003850568.1| - 0.0028 17.6 12.8 0.0028 17.6 8.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315421|ref|YP_003850568.1| - 0.0042 17.3 18.3 0.054 13.8 1.9 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|304315421|ref|YP_003850568.1| - 0.0047 17.2 14.0 0.085 13.2 0.4 3.5 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304315421|ref|YP_003850568.1| - 0.011 16.0 15.5 0.14 12.5 1.6 2.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|304315421|ref|YP_003850568.1| - 1.2 9.5 17.2 2.9 8.4 3.9 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain HycI PF01750.13 gi|304315422|ref|YP_003850569.1| - 2.3e-37 127.4 0.0 2.7e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.14 gi|304315423|ref|YP_003850570.1| - 5e-76 256.4 0.3 1e-33 116.9 0.1 4.0 1 1 2 3 3 3 3 Nickel-dependent hydrogenase PepSY PF03413.14 gi|304315424|ref|YP_003850571.1| - 6.3e-06 26.7 0.1 1e-05 26.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain YhzD PF14120.1 gi|304315424|ref|YP_003850571.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 YhzD-like protein RAP1 PF07218.6 gi|304315424|ref|YP_003850571.1| - 0.58 8.1 2.7 0.61 8.1 1.9 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) PAC2 PF09754.4 gi|304315425|ref|YP_003850572.1| - 7.1e-39 133.9 0.0 8.7e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PHP PF02811.14 gi|304315426|ref|YP_003850573.1| - 8.6e-09 35.4 0.0 1.2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|304315426|ref|YP_003850573.1| - 8.6e-06 25.1 0.0 2.7e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 PHP-associated PAC2 PF09754.4 gi|304315427|ref|YP_003850574.1| - 1.1e-57 195.4 0.0 1.3e-57 195.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|304315428|ref|YP_003850575.1| - 1.3e-22 79.2 2.2 1.4e-22 79.1 1.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.6 gi|304315428|ref|YP_003850575.1| - 0.00019 21.2 0.7 0.00026 20.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) NOB1_Zn_bind PF08772.6 gi|304315428|ref|YP_003850575.1| - 0.014 15.2 0.2 0.014 15.1 0.1 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.10 gi|304315428|ref|YP_003850575.1| - 0.022 14.2 0.4 0.028 13.8 0.3 1.2 1 0 0 1 1 1 0 RecR protein PolC_DP2 PF03833.8 gi|304315428|ref|YP_003850575.1| - 0.022 12.4 0.3 0.022 12.4 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.6 gi|304315428|ref|YP_003850575.1| - 0.25 10.9 0.5 0.25 10.9 0.4 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.3 gi|304315428|ref|YP_003850575.1| - 0.84 9.6 8.4 0.53 10.2 4.0 2.0 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.1 gi|304315428|ref|YP_003850575.1| - 0.87 8.8 3.5 0.66 9.2 0.3 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger EIF_2_alpha PF07541.7 gi|304315429|ref|YP_003850576.1| - 5.5e-30 103.4 0.1 1.2e-29 102.2 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|304315429|ref|YP_003850576.1| - 3.8e-11 42.9 0.2 8.4e-11 41.8 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain GRAS PF03514.9 gi|304315429|ref|YP_003850576.1| - 0.03 13.0 0.0 0.041 12.6 0.0 1.2 1 0 0 1 1 1 0 GRAS domain family B12-binding_2 PF02607.12 gi|304315429|ref|YP_003850576.1| - 0.13 12.3 0.8 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 B12 binding domain Ribosomal_S27e PF01667.12 gi|304315430|ref|YP_003850577.1| - 2e-29 100.8 1.0 2.2e-29 100.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|304315430|ref|YP_003850577.1| - 0.0016 17.8 1.7 0.0022 17.4 1.2 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|304315430|ref|YP_003850577.1| - 0.0065 15.7 0.2 0.0093 15.2 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|304315430|ref|YP_003850577.1| - 0.0076 15.9 0.3 0.0077 15.9 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-BED PF02892.10 gi|304315430|ref|YP_003850577.1| - 0.02 14.6 1.0 0.49 10.2 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger DUF3797 PF12677.2 gi|304315430|ref|YP_003850577.1| - 0.055 13.0 4.1 0.99 9.0 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2387 PF09526.5 gi|304315430|ref|YP_003850577.1| - 0.063 13.2 0.9 0.86 9.5 0.9 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS91 PF14319.1 gi|304315430|ref|YP_003850577.1| - 0.078 12.4 0.1 0.084 12.3 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Lar_restr_allev PF14354.1 gi|304315430|ref|YP_003850577.1| - 0.086 13.1 1.2 0.61 10.4 0.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|304315430|ref|YP_003850577.1| - 0.089 12.7 0.4 0.15 12.0 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF2180 PF09947.4 gi|304315430|ref|YP_003850577.1| - 0.089 12.5 0.7 0.11 12.2 0.5 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) OrfB_Zn_ribbon PF07282.6 gi|304315430|ref|YP_003850577.1| - 0.094 12.3 0.2 0.1 12.2 0.2 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|304315430|ref|YP_003850577.1| - 0.099 12.2 0.9 2.2 8.0 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2HC5 PF06221.8 gi|304315430|ref|YP_003850577.1| - 0.11 12.2 1.5 0.32 10.7 1.0 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-Sec23_Sec24 PF04810.10 gi|304315430|ref|YP_003850577.1| - 0.12 11.9 0.6 0.19 11.3 0.4 1.4 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger GCC2_GCC3 PF07699.8 gi|304315430|ref|YP_003850577.1| - 0.14 11.7 1.3 0.46 10.0 0.9 1.8 1 1 0 1 1 1 0 GCC2 and GCC3 DNA_RNApol_7kD PF03604.8 gi|304315430|ref|YP_003850577.1| - 0.25 10.8 1.8 0.44 10.0 1.2 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Sgf11 PF08209.6 gi|304315430|ref|YP_003850577.1| - 0.25 10.6 1.2 9.3 5.6 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) YhfH PF14149.1 gi|304315430|ref|YP_003850577.1| - 1.1 9.0 3.9 12 5.7 0.3 2.2 1 1 1 2 2 2 0 YhfH-like protein Ribosomal_L44 PF00935.14 gi|304315431|ref|YP_003850578.1| - 2.2e-26 91.6 3.5 3.1e-26 91.1 2.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|304315431|ref|YP_003850578.1| - 0.00056 20.0 3.2 0.0026 17.9 0.3 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 zf-ribbon_3 PF13248.1 gi|304315431|ref|YP_003850578.1| - 0.0052 15.9 0.6 1.1 8.4 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|304315431|ref|YP_003850578.1| - 0.015 15.2 2.0 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|304315431|ref|YP_003850578.1| - 0.019 14.4 2.1 0.49 9.9 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger NOB1_Zn_bind PF08772.6 gi|304315431|ref|YP_003850578.1| - 0.025 14.3 3.2 0.19 11.5 0.2 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.1 gi|304315431|ref|YP_003850578.1| - 0.03 14.3 7.0 1.1 9.3 0.1 2.7 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-trcl PF13451.1 gi|304315431|ref|YP_003850578.1| - 0.031 13.9 1.4 1 9.0 0.0 2.4 2 0 0 2 2 2 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|304315431|ref|YP_003850578.1| - 0.044 13.2 5.1 1.5 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|304315431|ref|YP_003850578.1| - 0.062 12.9 0.2 8.9 6.0 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|304315431|ref|YP_003850578.1| - 0.07 12.4 0.6 3.2 7.1 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|304315431|ref|YP_003850578.1| - 0.1 12.4 3.9 2.3 8.0 2.8 2.1 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|304315431|ref|YP_003850578.1| - 0.15 11.5 2.9 0.94 9.0 0.4 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain DUF1272 PF06906.6 gi|304315431|ref|YP_003850578.1| - 0.2 11.5 1.2 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) GFA PF04828.9 gi|304315431|ref|YP_003850578.1| - 0.23 11.4 1.5 1.1 9.3 1.0 1.8 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|304315431|ref|YP_003850578.1| - 0.26 10.9 3.4 8.6 6.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|304315431|ref|YP_003850578.1| - 0.37 10.5 3.6 9.5 6.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|304315431|ref|YP_003850578.1| - 0.75 9.5 5.5 3 7.6 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.1 gi|304315431|ref|YP_003850578.1| - 0.94 9.8 7.0 9.2 6.7 0.5 2.5 2 1 0 2 2 2 0 Zinc-finger double domain TFIIS_C PF01096.13 gi|304315431|ref|YP_003850578.1| - 4.8 6.8 6.7 18 5.0 0.1 2.7 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|304315431|ref|YP_003850578.1| - 5.2 6.9 7.4 13 5.7 0.1 2.6 2 1 0 2 2 2 0 Transposase zinc-ribbon domain PCNA_N PF00705.13 gi|304315433|ref|YP_003850580.1| - 5.4e-23 80.8 0.4 1e-22 80.0 0.3 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|304315433|ref|YP_003850580.1| - 6.2e-11 41.9 0.0 8.5e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|304315433|ref|YP_003850580.1| - 2.4e-07 29.8 0.2 7.6e-05 21.6 0.0 2.3 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.10 gi|304315433|ref|YP_003850580.1| - 5.6e-07 29.5 0.8 0.00014 21.7 0.1 3.2 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.7 gi|304315433|ref|YP_003850580.1| - 0.0011 17.9 0.0 0.0019 17.2 0.0 1.4 2 0 0 2 2 2 1 Hus1-like protein DNA_pol3_beta_2 PF02767.11 gi|304315433|ref|YP_003850580.1| - 0.059 13.4 0.2 0.17 11.9 0.1 1.8 2 0 0 2 2 2 0 DNA polymerase III beta subunit, central domain COPI_assoc PF08507.5 gi|304315434|ref|YP_003850581.1| - 0.00035 20.2 0.3 0.00045 19.8 0.2 1.2 1 0 0 1 1 1 1 COPI associated protein IncA PF04156.9 gi|304315434|ref|YP_003850581.1| - 0.0029 17.2 0.2 0.65 9.5 0.2 2.2 2 0 0 2 2 2 1 IncA protein BacA PF02673.13 gi|304315434|ref|YP_003850581.1| - 0.0039 16.4 0.5 0.0041 16.3 0.3 1.1 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF914 PF06027.7 gi|304315434|ref|YP_003850581.1| - 0.0051 15.6 1.0 0.0051 15.6 0.7 1.0 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) ABC2_membrane_5 PF13346.1 gi|304315434|ref|YP_003850581.1| - 0.0062 15.8 3.0 0.007 15.6 2.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2754 PF10953.3 gi|304315434|ref|YP_003850581.1| - 0.015 15.3 1.3 0.024 14.7 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2754) Borrelia_P13 PF05628.7 gi|304315434|ref|YP_003850581.1| - 0.017 14.9 0.4 0.02 14.6 0.3 1.1 1 0 0 1 1 1 0 Borrelia membrane protein P13 Claudin_2 PF13903.1 gi|304315434|ref|YP_003850581.1| - 0.018 14.7 0.1 0.021 14.5 0.1 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3098 PF11297.3 gi|304315434|ref|YP_003850581.1| - 0.036 13.7 2.1 0.047 13.4 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3098) PIRT PF15099.1 gi|304315434|ref|YP_003850581.1| - 0.061 12.5 0.2 0.079 12.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family Got1 PF04178.7 gi|304315434|ref|YP_003850581.1| - 0.071 13.2 0.3 0.083 13.0 0.2 1.1 1 0 0 1 1 1 0 Got1/Sft2-like family ATP1G1_PLM_MAT8 PF02038.11 gi|304315434|ref|YP_003850581.1| - 0.093 11.7 6.0 0.18 10.8 0.2 2.2 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Ketoacyl-synt_2 PF13723.1 gi|304315434|ref|YP_003850581.1| - 0.12 11.6 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain DUF4134 PF13572.1 gi|304315434|ref|YP_003850581.1| - 0.13 12.3 1.4 0.18 11.9 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) DUF3096 PF11295.3 gi|304315434|ref|YP_003850581.1| - 0.14 11.6 9.1 0.1 12.1 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|304315434|ref|YP_003850581.1| - 0.18 11.7 8.8 0.35 10.8 5.8 1.7 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DUF3955 PF13127.1 gi|304315434|ref|YP_003850581.1| - 0.75 9.3 4.6 4.7 6.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) DUF3185 PF11381.3 gi|304315434|ref|YP_003850581.1| - 2.7 7.8 7.8 7.7 6.3 4.9 2.1 2 1 0 2 2 1 0 Protein of unknown function (DUF3185) TFIIS_C PF01096.13 gi|304315435|ref|YP_003850582.1| - 2e-17 62.5 7.5 2e-17 62.5 5.2 2.6 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|304315435|ref|YP_003850582.1| - 5.8e-06 25.8 18.2 1.5e-05 24.5 1.7 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|304315435|ref|YP_003850582.1| - 0.0001 22.0 1.8 0.0001 22.0 1.3 2.5 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|304315435|ref|YP_003850582.1| - 0.00074 18.9 10.3 0.00089 18.7 1.9 3.0 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|304315435|ref|YP_003850582.1| - 0.0017 18.1 8.6 0.12 12.2 0.7 2.6 2 1 1 3 3 3 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|304315435|ref|YP_003850582.1| - 0.0037 16.8 11.7 0.2 11.3 0.7 2.8 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|304315435|ref|YP_003850582.1| - 0.0066 16.3 0.5 0.0066 16.3 0.3 3.0 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) VP_N-CPKC PF11475.3 gi|304315435|ref|YP_003850582.1| - 0.011 15.2 2.0 3.3 7.3 0.1 2.5 2 0 0 2 2 2 0 Virion protein N terminal domain Terminase_GpA PF05876.7 gi|304315435|ref|YP_003850582.1| - 0.017 13.4 1.5 0.028 12.7 1.0 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|304315435|ref|YP_003850582.1| - 0.035 13.3 12.5 0.1 11.8 0.2 3.5 4 0 0 4 4 4 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|304315435|ref|YP_003850582.1| - 0.046 13.0 0.1 0.046 13.0 0.1 1.8 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger zinc_ribbon_4 PF13717.1 gi|304315435|ref|YP_003850582.1| - 0.069 12.8 14.6 1.2 8.8 0.5 4.1 4 1 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|304315435|ref|YP_003850582.1| - 0.07 12.6 17.2 0.81 9.2 0.2 3.7 3 1 0 3 3 3 0 zinc-ribbon domain FdhE PF04216.7 gi|304315435|ref|YP_003850582.1| - 0.076 12.7 0.3 0.076 12.7 0.2 1.8 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation zinc_ribbon_5 PF13719.1 gi|304315435|ref|YP_003850582.1| - 0.081 12.5 14.7 0.92 9.1 0.3 4.0 4 1 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|304315435|ref|YP_003850582.1| - 0.28 10.5 10.9 1.1 8.6 1.1 3.2 2 2 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|304315435|ref|YP_003850582.1| - 0.55 9.4 9.2 3.7 6.8 3.0 2.7 2 1 0 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|304315435|ref|YP_003850582.1| - 0.97 9.7 9.9 1.1 9.5 0.8 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF3797 PF12677.2 gi|304315435|ref|YP_003850582.1| - 1.3 8.7 0.0 1.3 8.7 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) zf-C4_Topoisom PF01396.14 gi|304315435|ref|YP_003850582.1| - 1.7 8.1 14.9 1 8.9 0.8 3.2 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RecR PF02132.10 gi|304315435|ref|YP_003850582.1| - 2.2 7.7 4.4 15 5.0 0.0 2.9 3 0 0 3 3 3 0 RecR protein Rubredoxin PF00301.15 gi|304315435|ref|YP_003850582.1| - 3 7.8 13.6 5.4 6.9 0.0 3.9 3 1 0 4 4 4 0 Rubredoxin zf-Mss51 PF13824.1 gi|304315435|ref|YP_003850582.1| - 3.1 7.7 6.6 20 5.1 0.8 2.8 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2082 PF09855.4 gi|304315435|ref|YP_003850582.1| - 3.1 7.7 13.9 43 4.0 4.2 3.5 2 2 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) C1_4 PF07975.7 gi|304315435|ref|YP_003850582.1| - 3.2 7.8 9.3 4.3 7.4 0.1 3.0 3 1 0 3 3 3 0 TFIIH C1-like domain zf-MYND PF01753.13 gi|304315435|ref|YP_003850582.1| - 3.4 7.6 8.7 0.99 9.3 0.9 2.6 2 1 0 2 2 2 0 MYND finger HypA PF01155.14 gi|304315435|ref|YP_003850582.1| - 4.4 7.0 9.5 14 5.3 2.9 3.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-UBR PF02207.15 gi|304315435|ref|YP_003850582.1| - 5.1 6.8 8.7 4.1 7.2 0.3 2.9 2 1 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-C2HC_2 PF13913.1 gi|304315435|ref|YP_003850582.1| - 5.1 6.8 11.1 1.3 8.7 0.3 2.9 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Auto_anti-p27 PF06677.7 gi|304315435|ref|YP_003850582.1| - 5.4 6.8 14.8 0.28 10.9 3.0 2.7 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.16 gi|304315435|ref|YP_003850582.1| - 6.5 6.7 13.4 4.6e+03 -2.5 9.3 2.9 1 1 0 1 1 0 0 IBR domain UPF0547 PF10571.4 gi|304315435|ref|YP_003850582.1| - 7.7 6.3 13.1 7.9 6.2 0.0 3.7 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|304315435|ref|YP_003850582.1| - 8.1 6.4 9.8 1.9 8.5 0.6 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|304315435|ref|YP_003850582.1| - 8.8 6.3 14.1 4.8 7.2 0.1 3.8 4 0 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|304315435|ref|YP_003850582.1| - 8.9 6.0 13.0 3.8 7.2 0.2 3.6 4 0 0 4 4 4 0 Nudix N-terminal zf-AN1 PF01428.11 gi|304315435|ref|YP_003850582.1| - 9.7 6.1 10.4 21 5.0 0.1 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger NUDIX PF00293.23 gi|304315436|ref|YP_003850583.1| - 3.2e-23 81.8 0.0 3.6e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF99 PF01949.11 gi|304315437|ref|YP_003850584.1| - 6.8e-72 240.5 0.0 7.6e-72 240.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 RNA_pol_L_2 PF13656.1 gi|304315438|ref|YP_003850585.1| - 2.2e-19 68.6 0.0 2.5e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|304315438|ref|YP_003850585.1| - 1.6e-05 23.9 0.1 6.4e-05 22.0 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.1 gi|304315439|ref|YP_003850586.1| - 6.7e-10 38.1 0.0 1.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region A2L_zn_ribbon PF08792.5 gi|304315439|ref|YP_003850586.1| - 0.0022 17.3 0.7 0.0039 16.5 0.5 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain EXOSC1 PF10447.4 gi|304315439|ref|YP_003850586.1| - 0.0038 17.1 2.2 0.0047 16.8 0.3 2.1 2 1 0 2 2 1 1 Exosome component EXOSC1/CSL4 TerY-C PF15616.1 gi|304315439|ref|YP_003850586.1| - 0.009 15.9 0.4 0.02 14.8 0.3 1.5 2 0 0 2 2 2 1 TerY-C metal binding domain HypA PF01155.14 gi|304315439|ref|YP_003850586.1| - 0.015 14.9 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|304315439|ref|YP_003850586.1| - 0.028 13.8 3.6 0.053 13.0 2.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|304315439|ref|YP_003850586.1| - 0.038 13.6 1.1 2.6 7.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Spt4 PF06093.8 gi|304315439|ref|YP_003850586.1| - 0.1 12.4 1.6 0.19 11.6 1.1 1.4 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger TRAM PF01938.15 gi|304315439|ref|YP_003850586.1| - 0.14 11.9 0.7 0.56 10.0 0.1 2.3 2 1 0 2 2 2 0 TRAM domain S1 PF00575.18 gi|304315439|ref|YP_003850586.1| - 0.19 11.8 1.3 5.8 7.0 0.9 2.5 1 1 0 1 1 1 0 S1 RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|304315439|ref|YP_003850586.1| - 0.29 10.8 2.5 0.51 10.0 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|304315439|ref|YP_003850586.1| - 0.38 10.7 2.8 0.82 9.6 1.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|304315439|ref|YP_003850586.1| - 1.7 8.2 6.1 2.8 7.6 0.3 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Diphthamide_syn PF01866.12 gi|304315440|ref|YP_003850587.1| - 3.5e-102 341.7 0.0 4e-102 341.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Pribosyltran PF00156.22 gi|304315441|ref|YP_003850588.1| - 2.9e-21 75.4 0.4 4.4e-21 74.9 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|304315441|ref|YP_003850588.1| - 6.6e-05 22.2 0.1 8.9e-05 21.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|304315441|ref|YP_003850588.1| - 0.0014 17.9 0.2 0.0019 17.5 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase MtrA PF04208.9 gi|304315441|ref|YP_003850588.1| - 0.17 11.3 2.4 0.57 9.6 0.5 2.1 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit A SRP54 PF00448.17 gi|304315442|ref|YP_003850589.1| - 1.7e-73 246.3 0.0 3.1e-73 245.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|304315442|ref|YP_003850589.1| - 2.8e-31 107.8 7.6 2.6e-30 104.7 3.3 3.1 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|304315442|ref|YP_003850589.1| - 1.3e-18 66.8 0.9 1.3e-18 66.8 0.6 2.8 4 0 0 4 4 2 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.1 gi|304315442|ref|YP_003850589.1| - 1.2e-05 26.1 0.4 0.00018 22.3 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|304315442|ref|YP_003850589.1| - 1.3e-05 25.0 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|304315442|ref|YP_003850589.1| - 1.7e-05 24.3 0.0 6.1e-05 22.5 0.0 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|304315442|ref|YP_003850589.1| - 2.5e-05 24.0 0.6 6.9e-05 22.5 0.4 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|304315442|ref|YP_003850589.1| - 0.00017 21.5 0.1 0.0038 17.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|304315442|ref|YP_003850589.1| - 0.00052 20.0 0.0 0.0017 18.3 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|304315442|ref|YP_003850589.1| - 0.00096 18.0 0.5 0.0071 15.1 0.0 2.4 3 0 0 3 3 3 1 ArgK protein AAA_10 PF12846.2 gi|304315442|ref|YP_003850589.1| - 0.001 18.5 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain cobW PF02492.14 gi|304315442|ref|YP_003850589.1| - 0.0011 18.3 1.8 0.013 14.9 1.2 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|304315442|ref|YP_003850589.1| - 0.0012 18.0 0.0 0.0029 16.8 0.0 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|304315442|ref|YP_003850589.1| - 0.0014 18.2 0.3 0.016 14.7 0.0 2.8 4 0 0 4 4 4 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|304315442|ref|YP_003850589.1| - 0.0021 18.3 0.3 0.0081 16.4 0.1 2.3 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|304315442|ref|YP_003850589.1| - 0.0021 18.2 0.0 0.006 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|304315442|ref|YP_003850589.1| - 0.0034 17.3 0.1 0.011 15.7 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|304315442|ref|YP_003850589.1| - 0.0038 16.3 0.0 0.0075 15.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin G-alpha PF00503.15 gi|304315442|ref|YP_003850589.1| - 0.0047 15.6 0.1 0.019 13.6 0.1 1.9 1 1 0 2 2 2 1 G-protein alpha subunit 6PF2K PF01591.13 gi|304315442|ref|YP_003850589.1| - 0.0051 15.9 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase LpxK PF02606.9 gi|304315442|ref|YP_003850589.1| - 0.0051 15.8 0.0 0.023 13.6 0.0 1.9 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_30 PF13604.1 gi|304315442|ref|YP_003850589.1| - 0.0059 16.2 0.0 0.014 14.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|304315442|ref|YP_003850589.1| - 0.0062 16.2 0.3 0.026 14.2 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase NTPase_1 PF03266.10 gi|304315442|ref|YP_003850589.1| - 0.0072 16.0 0.8 0.021 14.5 0.1 2.1 2 0 0 2 2 2 1 NTPase APS_kinase PF01583.15 gi|304315442|ref|YP_003850589.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.17 gi|304315442|ref|YP_003850589.1| - 0.016 15.3 0.0 0.22 11.6 0.0 2.3 1 1 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|304315442|ref|YP_003850589.1| - 0.019 14.2 0.0 0.044 12.9 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MipZ PF09140.6 gi|304315442|ref|YP_003850589.1| - 0.028 13.4 0.2 0.96 8.4 0.1 2.4 1 1 0 1 1 1 0 ATPase MipZ AAA_5 PF07728.9 gi|304315442|ref|YP_003850589.1| - 0.056 13.1 0.8 0.24 11.1 0.0 2.6 3 1 1 4 4 3 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.4 gi|304315442|ref|YP_003850589.1| - 0.065 11.8 0.0 0.14 10.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.1 gi|304315442|ref|YP_003850589.1| - 0.074 12.9 0.0 3.4 7.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|304315442|ref|YP_003850589.1| - 0.076 13.2 0.6 0.53 10.4 0.1 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|304315442|ref|YP_003850589.1| - 0.096 12.5 0.3 0.28 10.9 0.2 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Thymidylate_kin PF02223.12 gi|304315442|ref|YP_003850589.1| - 0.19 11.0 5.0 0.28 10.5 0.2 3.0 3 0 0 3 3 3 0 Thymidylate kinase THUMP PF02926.12 gi|304315443|ref|YP_003850590.1| - 7.3e-11 42.1 2.1 8.9e-11 41.8 0.1 2.0 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.13 gi|304315444|ref|YP_003850591.1| - 1e-26 92.5 2.0 1.1e-26 92.4 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|304315445|ref|YP_003850592.1| - 7.9e-12 45.2 0.0 1.3e-11 44.4 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 NIR_SIR_ferr PF03460.12 gi|304315445|ref|YP_003850592.1| - 0.0027 17.2 0.0 0.027 14.0 0.0 2.3 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain DUF655 PF04919.7 gi|304315446|ref|YP_003850593.1| - 5.6e-80 267.3 0.3 6.2e-80 267.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|304315446|ref|YP_003850593.1| - 0.00043 20.2 0.0 0.00083 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|304315446|ref|YP_003850593.1| - 0.0027 17.6 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|304315447|ref|YP_003850594.1| - 1e-47 162.4 0.0 1.2e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|304315447|ref|YP_003850594.1| - 5.7e-09 36.0 0.0 9.5e-09 35.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304315447|ref|YP_003850594.1| - 2.8e-08 34.3 0.0 4.5e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|304315447|ref|YP_003850594.1| - 0.00018 21.1 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|304315447|ref|YP_003850594.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304315447|ref|YP_003850594.1| - 0.0027 18.1 0.0 0.0061 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|304315447|ref|YP_003850594.1| - 0.0087 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|304315447|ref|YP_003850594.1| - 0.013 15.2 0.0 0.027 14.2 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain PCMT PF01135.14 gi|304315447|ref|YP_003850594.1| - 0.019 14.5 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SAM_MT PF04445.8 gi|304315447|ref|YP_003850594.1| - 0.025 13.7 0.3 0.049 12.7 0.0 1.5 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase Methyltransf_4 PF02390.12 gi|304315447|ref|YP_003850594.1| - 0.14 11.1 0.0 0.25 10.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase DuoxA PF10204.4 gi|304315448|ref|YP_003850595.1| - 0.01 14.8 0.8 0.013 14.6 0.6 1.0 1 0 0 1 1 1 0 Dual oxidase maturation factor DUF3043 PF11241.3 gi|304315448|ref|YP_003850595.1| - 0.073 12.6 6.3 0.35 10.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) DUF4281 PF14108.1 gi|304315448|ref|YP_003850595.1| - 0.23 11.5 3.6 0.53 10.3 2.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4281) PqiA PF04403.8 gi|304315448|ref|YP_003850595.1| - 0.51 9.9 9.3 2.2 7.8 1.8 2.1 1 1 1 2 2 2 0 Paraquat-inducible protein A 2TM PF13239.1 gi|304315448|ref|YP_003850595.1| - 5.8 7.0 5.8 2.6 8.1 0.8 2.2 1 1 1 2 2 2 0 2TM domain HTH_3 PF01381.17 gi|304315449|ref|YP_003850596.1| - 9.9e-17 60.5 0.1 1.1e-16 60.4 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|304315449|ref|YP_003850596.1| - 1e-11 44.8 0.1 1.2e-11 44.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|304315449|ref|YP_003850596.1| - 2.2e-11 43.6 0.1 2.3e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|304315449|ref|YP_003850596.1| - 3.2e-05 23.6 0.0 5.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|304315449|ref|YP_003850596.1| - 0.00018 21.2 0.0 0.0002 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|304315449|ref|YP_003850596.1| - 0.00031 20.3 0.1 0.00037 20.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|304315449|ref|YP_003850596.1| - 0.0009 18.8 0.1 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|304315449|ref|YP_003850596.1| - 0.00097 18.7 0.1 0.0013 18.2 0.0 1.3 1 1 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|304315449|ref|YP_003850596.1| - 0.00098 18.3 0.4 0.0015 17.8 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|304315449|ref|YP_003850596.1| - 0.022 14.1 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MerR PF00376.18 gi|304315449|ref|YP_003850596.1| - 0.023 14.2 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_26 PF13443.1 gi|304315449|ref|YP_003850596.1| - 0.028 14.6 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.1 gi|304315449|ref|YP_003850596.1| - 0.028 14.4 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|304315449|ref|YP_003850596.1| - 0.029 14.5 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.6 gi|304315449|ref|YP_003850596.1| - 0.034 14.3 0.1 0.046 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_AsnC-type PF13404.1 gi|304315449|ref|YP_003850596.1| - 0.088 12.3 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|304315449|ref|YP_003850596.1| - 0.1 12.1 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MTS PF05175.9 gi|304315450|ref|YP_003850597.1| - 4.5e-21 74.9 0.0 5.5e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|304315450|ref|YP_003850597.1| - 1.4e-17 63.8 0.0 2e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|304315450|ref|YP_003850597.1| - 8.1e-16 58.5 0.0 1.3e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|304315450|ref|YP_003850597.1| - 3e-13 49.6 0.0 4.2e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|304315450|ref|YP_003850597.1| - 1.8e-10 40.4 0.1 4.7e-09 35.7 0.1 2.0 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|304315450|ref|YP_003850597.1| - 5.7e-08 32.6 0.0 8.6e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|304315450|ref|YP_003850597.1| - 7e-08 32.8 0.0 3.1e-06 27.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|304315450|ref|YP_003850597.1| - 8.7e-08 32.5 0.0 2.7e-06 27.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|304315450|ref|YP_003850597.1| - 5.2e-06 26.1 0.0 6.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|304315450|ref|YP_003850597.1| - 8.2e-06 25.3 0.1 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|304315450|ref|YP_003850597.1| - 3.6e-05 24.0 0.0 6.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|304315450|ref|YP_003850597.1| - 0.00059 19.0 0.0 0.0036 16.4 0.0 1.8 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TRM PF02005.11 gi|304315450|ref|YP_003850597.1| - 0.0039 16.1 0.0 0.0069 15.3 0.0 1.3 2 0 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.13 gi|304315450|ref|YP_003850597.1| - 0.0063 16.0 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 UPF0146 PF03686.8 gi|304315450|ref|YP_003850597.1| - 0.01 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_24 PF13578.1 gi|304315450|ref|YP_003850597.1| - 0.022 15.5 0.0 0.046 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|304315450|ref|YP_003850597.1| - 0.028 13.4 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|304315450|ref|YP_003850597.1| - 0.028 14.0 0.1 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_15 PF09445.5 gi|304315450|ref|YP_003850597.1| - 0.04 13.4 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|304315450|ref|YP_003850597.1| - 0.044 13.3 0.0 0.078 12.5 0.0 1.4 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF2431 PF10354.4 gi|304315450|ref|YP_003850597.1| - 0.15 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) DAP_epimerase PF01678.14 gi|304315451|ref|YP_003850598.1| - 4.6e-73 242.8 0.8 1.4e-38 131.5 0.2 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.11 gi|304315452|ref|YP_003850599.1| - 8.6e-61 205.2 0.0 1.1e-60 204.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|304315452|ref|YP_003850599.1| - 1.7e-22 79.2 0.0 2.7e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|304315452|ref|YP_003850599.1| - 0.00013 21.5 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain NUDIX PF00293.23 gi|304315453|ref|YP_003850600.1| - 2.4e-21 75.8 0.1 3.2e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|304315453|ref|YP_003850600.1| - 9.8e-06 24.9 0.0 1.4e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Aminotran_3 PF00202.16 gi|304315454|ref|YP_003850601.1| - 6.3e-107 357.3 0.0 7.7e-107 357.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|304315454|ref|YP_003850601.1| - 5.7e-07 28.8 0.0 8.1e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|304315454|ref|YP_003850601.1| - 3.5e-05 22.7 0.0 5.4e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|304315454|ref|YP_003850601.1| - 0.011 14.9 0.0 0.023 13.8 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase Pro_isomerase PF00160.16 gi|304315455|ref|YP_003850602.1| - 2.7e-47 160.8 0.0 3e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GAF_2 PF13185.1 gi|304315456|ref|YP_003850603.1| - 3.5e-11 43.7 0.0 4.1e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 GAF domain HhH-GPD PF00730.20 gi|304315458|ref|YP_003850605.1| - 7.4e-24 84.1 0.0 1.2e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.7 gi|304315458|ref|YP_003850605.1| - 4e-10 39.6 0.0 6.2e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HHH PF00633.18 gi|304315458|ref|YP_003850605.1| - 1.8e-05 24.1 0.0 7.2e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif His_biosynth PF00977.16 gi|304315459|ref|YP_003850606.1| - 2.3e-84 282.2 0.0 2.7e-84 282.0 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|304315459|ref|YP_003850606.1| - 2.7e-09 36.4 0.0 0.00014 21.0 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|304315459|ref|YP_003850606.1| - 4.9e-06 25.9 0.0 0.0031 16.7 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|304315459|ref|YP_003850606.1| - 2.4e-05 23.4 0.0 0.05 12.5 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|304315459|ref|YP_003850606.1| - 2.9e-05 23.4 0.1 0.0003 20.1 0.0 2.4 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|304315459|ref|YP_003850606.1| - 0.00014 20.8 0.0 0.44 9.3 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|304315459|ref|YP_003850606.1| - 0.0013 17.8 0.1 1.3 8.1 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI Dus PF01207.12 gi|304315459|ref|YP_003850606.1| - 0.0015 17.4 0.0 0.024 13.4 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.7 gi|304315459|ref|YP_003850606.1| - 0.0069 15.4 0.0 0.039 12.9 0.0 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|304315459|ref|YP_003850606.1| - 0.017 13.9 0.0 0.2 10.4 0.0 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|304315459|ref|YP_003850606.1| - 0.04 12.8 0.1 2.8 6.8 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF561) dTDP_sugar_isom PF00908.12 gi|304315460|ref|YP_003850607.1| - 1.2e-05 24.6 0.0 1.3e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|304315460|ref|YP_003850607.1| - 0.1 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Cupin domain FdtA PF05523.6 gi|304315461|ref|YP_003850608.1| - 8.7e-07 28.5 0.0 9.2e-07 28.4 0.0 1.0 1 0 0 1 1 1 1 WxcM-like, C-terminal dTDP_sugar_isom PF00908.12 gi|304315461|ref|YP_003850608.1| - 0.00027 20.2 0.0 0.0003 20.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Flavin_Reduct PF01613.13 gi|304315462|ref|YP_003850609.1| - 1e-17 64.4 0.0 1.5e-17 63.8 0.0 1.2 1 1 0 1 1 1 1 Flavin reductase like domain DUF1462 PF07315.6 gi|304315462|ref|YP_003850609.1| - 0.044 13.7 0.0 0.097 12.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1462) DUF447 PF04289.7 gi|304315462|ref|YP_003850609.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF447) YqhR PF11085.3 gi|304315463|ref|YP_003850610.1| - 0.33 10.4 5.1 0.4 10.2 3.5 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR Peptidase_C39 PF03412.10 gi|304315464|ref|YP_003850611.1| - 5.9e-28 97.2 0.0 8.2e-28 96.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.1 gi|304315464|ref|YP_003850611.1| - 3e-08 34.1 2.5 1e-05 25.9 0.0 2.9 2 1 1 3 3 3 2 Peptidase_C39 like family DUF3335 PF11814.3 gi|304315464|ref|YP_003850611.1| - 0.02 14.0 0.2 0.18 10.9 0.1 2.3 2 1 0 2 2 2 0 Peptidase_C39 like family Acyl-CoA_dh_M PF02770.14 gi|304315465|ref|YP_003850612.1| - 0.012 15.1 0.1 0.15 11.6 0.0 2.2 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain EcsB PF05975.7 gi|304315468|ref|YP_003850615.1| - 0.055 11.9 7.9 0.067 11.6 5.5 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB UNC-50 PF05216.8 gi|304315468|ref|YP_003850615.1| - 0.3 10.2 5.4 0.62 9.2 3.7 1.6 1 1 0 1 1 1 0 UNC-50 family EpsG PF14897.1 gi|304315468|ref|YP_003850615.1| - 0.39 9.5 7.9 0.14 11.0 3.3 1.6 1 1 1 2 2 2 0 EpsG family DUF3488 PF11992.3 gi|304315468|ref|YP_003850615.1| - 0.43 9.1 4.8 0.61 8.6 3.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) FUSC_2 PF13515.1 gi|304315468|ref|YP_003850615.1| - 1.2 9.0 9.6 0.21 11.4 0.8 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein-like DUF975 PF06161.6 gi|304315468|ref|YP_003850615.1| - 1.6 8.4 9.6 4 7.0 6.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF975) PRA1 PF03208.14 gi|304315468|ref|YP_003850615.1| - 2.8 7.2 7.8 3.7 6.8 5.4 1.1 1 0 0 1 1 1 0 PRA1 family protein MgtC PF02308.11 gi|304315469|ref|YP_003850616.1| - 0.038 13.8 0.8 0.094 12.5 0.2 1.7 1 1 1 2 2 2 0 MgtC family MNHE PF01899.11 gi|304315469|ref|YP_003850616.1| - 0.11 12.1 2.8 0.094 12.3 1.1 1.4 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit O-antigen_lig PF13425.1 gi|304315469|ref|YP_003850616.1| - 2.7 7.9 9.3 5.9 6.8 6.4 1.6 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF751 PF05421.6 gi|304315469|ref|YP_003850616.1| - 3.4 8.0 9.0 0.6 10.4 0.6 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF751) DUF4131 PF13567.1 gi|304315469|ref|YP_003850616.1| - 6.4 6.1 13.0 0.66 9.3 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) FmdE PF02663.9 gi|304315470|ref|YP_003850617.1| - 1.9e-36 124.8 0.1 2.4e-36 124.5 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|304315470|ref|YP_003850617.1| - 3.2e-09 36.3 4.1 3.2e-09 36.3 2.8 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|304315470|ref|YP_003850617.1| - 0.0083 16.1 0.1 0.016 15.2 0.1 1.4 1 0 0 1 1 1 1 LIM domain Helicase_C_2 PF13307.1 gi|304315471|ref|YP_003850618.1| - 1.3e-19 70.8 0.4 3.3e-19 69.4 0.0 1.9 2 1 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.10 gi|304315471|ref|YP_003850618.1| - 1.9e-07 31.1 0.0 1.3e-06 28.3 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD_2 PF06733.10 gi|304315471|ref|YP_003850618.1| - 4.3e-06 26.2 0.0 7.7e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|304315471|ref|YP_003850618.1| - 0.0051 16.3 0.1 1.5 8.3 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|304315471|ref|YP_003850618.1| - 0.012 15.2 0.0 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|304315471|ref|YP_003850618.1| - 0.021 14.5 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain PhoH PF02562.11 gi|304315471|ref|YP_003850618.1| - 0.068 12.3 0.2 7.6 5.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Helicase_C PF00271.26 gi|304315471|ref|YP_003850618.1| - 0.07 12.9 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|304315471|ref|YP_003850618.1| - 0.095 12.8 0.6 3.3 7.8 0.1 2.9 3 0 0 3 3 3 0 AAA domain TP_methylase PF00590.15 gi|304315472|ref|YP_003850619.1| - 1.6e-45 155.4 0.0 1.8e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases V4R PF02830.13 gi|304315473|ref|YP_003850620.1| - 5.5e-16 58.1 0.1 9.3e-16 57.4 0.1 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|304315473|ref|YP_003850620.1| - 2.6e-12 46.1 0.3 5.7e-12 45.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|304315473|ref|YP_003850620.1| - 1.3e-09 37.5 0.1 2.3e-09 36.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|304315473|ref|YP_003850620.1| - 5.2e-05 22.9 0.0 0.00012 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|304315473|ref|YP_003850620.1| - 0.00056 19.5 0.3 0.001 18.7 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|304315473|ref|YP_003850620.1| - 0.00061 20.0 0.0 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|304315473|ref|YP_003850620.1| - 0.00062 19.3 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|304315473|ref|YP_003850620.1| - 0.0056 16.0 0.1 0.015 14.6 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|304315473|ref|YP_003850620.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|304315473|ref|YP_003850620.1| - 0.0081 15.7 0.1 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|304315473|ref|YP_003850620.1| - 0.009 15.7 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.8 gi|304315473|ref|YP_003850620.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain ATC_hydrolase PF14196.1 gi|304315473|ref|YP_003850620.1| - 0.051 13.9 0.6 0.085 13.2 0.4 1.3 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase HTH_36 PF13730.1 gi|304315473|ref|YP_003850620.1| - 0.081 13.0 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|304315473|ref|YP_003850620.1| - 0.087 12.4 0.2 0.2 11.3 0.2 1.6 1 0 0 1 1 1 0 HTH domain HTH_40 PF14493.1 gi|304315473|ref|YP_003850620.1| - 0.092 12.9 0.0 0.99 9.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Crp PF00325.15 gi|304315473|ref|YP_003850620.1| - 0.23 10.9 2.1 9 5.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Lactamase_B PF00753.22 gi|304315474|ref|YP_003850621.1| - 6.2e-24 84.7 0.1 9.3e-24 84.1 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|304315474|ref|YP_003850621.1| - 1.8e-19 70.1 0.0 3.4e-16 59.5 0.0 2.3 2 0 0 2 2 2 2 Flavodoxin PGM_PMM_II PF02879.11 gi|304315474|ref|YP_003850621.1| - 0.0018 18.5 0.0 0.82 10.0 0.0 2.5 2 0 0 2 2 2 2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Flavodoxin_5 PF12724.2 gi|304315474|ref|YP_003850621.1| - 0.0063 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|304315474|ref|YP_003850621.1| - 0.02 14.3 0.0 0.12 11.9 0.0 2.1 2 1 0 2 2 2 0 NADPH-dependent FMN reductase Rubrerythrin PF02915.12 gi|304315475|ref|YP_003850622.1| - 6e-18 65.4 3.7 4.4e-17 62.6 2.6 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|304315475|ref|YP_003850622.1| - 2.6e-07 30.4 0.9 5.1e-06 26.2 0.6 2.0 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.1 gi|304315475|ref|YP_003850622.1| - 0.047 13.6 0.4 3.9 7.4 0.1 2.1 2 0 0 2 2 2 0 Ferritin-like domain Rubredoxin PF00301.15 gi|304315476|ref|YP_003850623.1| - 3.8e-09 36.2 5.4 2.5e-08 33.6 3.8 2.2 1 1 0 1 1 1 1 Rubredoxin Pyr_redox_2 PF07992.9 gi|304315478|ref|YP_003850625.1| - 5.8e-42 143.8 0.0 1.6e-41 142.4 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|304315478|ref|YP_003850625.1| - 5.6e-28 97.1 6.5 6.6e-20 71.3 0.6 3.5 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|304315478|ref|YP_003850625.1| - 3.9e-16 59.0 0.0 9.9e-16 57.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|304315478|ref|YP_003850625.1| - 1.9e-15 56.6 9.1 0.00015 20.8 0.2 4.3 4 0 0 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|304315478|ref|YP_003850625.1| - 1.5e-12 48.0 1.0 1.2e-06 28.7 0.0 3.6 3 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|304315478|ref|YP_003850625.1| - 2.3e-09 36.2 0.4 0.053 11.9 0.0 4.8 5 0 0 5 5 5 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|304315478|ref|YP_003850625.1| - 1.1e-08 34.9 0.5 0.0029 17.5 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|304315478|ref|YP_003850625.1| - 1.5e-08 33.9 0.1 1.2e-05 24.3 0.0 2.9 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|304315478|ref|YP_003850625.1| - 3e-08 33.8 0.4 0.0024 18.1 0.0 2.9 2 1 1 3 3 3 2 Putative NAD(P)-binding FAD_binding_2 PF00890.19 gi|304315478|ref|YP_003850625.1| - 6e-06 25.3 6.2 0.11 11.2 0.0 4.5 4 1 1 5 5 5 2 FAD binding domain Thi4 PF01946.12 gi|304315478|ref|YP_003850625.1| - 7.6e-06 25.1 0.1 0.031 13.3 0.0 2.5 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.17 gi|304315478|ref|YP_003850625.1| - 1.5e-05 24.0 5.2 0.19 10.5 0.3 4.0 3 1 1 4 4 4 2 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|304315478|ref|YP_003850625.1| - 2.8e-05 22.9 0.3 0.085 11.4 0.0 2.5 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|304315478|ref|YP_003850625.1| - 5.7e-05 22.1 3.3 0.43 9.4 0.0 3.6 4 0 0 4 4 4 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|304315478|ref|YP_003850625.1| - 8.7e-05 22.2 0.4 8.7e-05 22.2 0.3 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|304315478|ref|YP_003850625.1| - 9e-05 22.2 7.8 0.81 9.4 0.0 4.2 3 1 1 4 4 4 2 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|304315478|ref|YP_003850625.1| - 0.00065 19.6 0.8 1.7 8.6 0.0 2.9 3 1 0 3 3 2 2 TrkA-N domain FAD_binding_3 PF01494.14 gi|304315478|ref|YP_003850625.1| - 0.0026 16.8 2.0 0.54 9.2 0.1 2.5 2 1 0 2 2 2 2 FAD binding domain Shikimate_DH PF01488.15 gi|304315478|ref|YP_003850625.1| - 0.0035 17.4 4.3 0.36 10.9 0.4 3.7 3 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.2 gi|304315478|ref|YP_003850625.1| - 0.0082 15.2 6.0 0.035 13.1 0.2 3.1 3 1 1 4 4 4 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|304315478|ref|YP_003850625.1| - 0.061 12.8 0.4 0.6 9.6 0.0 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|304315478|ref|YP_003850625.1| - 0.066 12.5 1.4 0.16 11.3 0.1 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.19 gi|304315478|ref|YP_003850625.1| - 0.074 12.1 2.0 0.38 9.7 0.1 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.14 gi|304315478|ref|YP_003850625.1| - 0.11 11.6 0.2 0.49 9.5 0.1 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|304315478|ref|YP_003850625.1| - 0.17 11.2 3.1 6.9 6.0 0.3 2.9 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA LMWPc PF01451.16 gi|304315479|ref|YP_003850626.1| - 9.3e-32 110.2 0.0 1e-31 110.0 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase dTMP_synthase PF02593.9 gi|304315480|ref|YP_003850627.1| - 3.9e-70 235.6 0.1 4.3e-70 235.4 0.1 1.0 1 0 0 1 1 1 1 Thymidylate synthase DrsE PF02635.10 gi|304315481|ref|YP_003850628.1| - 1.1e-21 77.1 0.0 1.2e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.10 gi|304315482|ref|YP_003850629.1| - 7.3e-14 51.8 0.0 8.1e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|304315482|ref|YP_003850629.1| - 0.00036 20.1 0.2 0.0012 18.4 0.1 1.8 1 1 0 1 1 1 1 DsrH like protein FeS PF04060.8 gi|304315483|ref|YP_003850630.1| - 1.9e-16 59.3 6.2 3e-16 58.7 4.3 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster DUF1846 PF08903.6 gi|304315483|ref|YP_003850630.1| - 0.066 11.6 0.1 2 6.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1846) DsrH PF04077.7 gi|304315484|ref|YP_003850631.1| - 1.1e-18 66.6 0.0 1.2e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 DsrH like protein FeoB_N PF02421.13 gi|304315485|ref|YP_003850632.1| - 3.8e-61 204.9 0.0 6.6e-61 204.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|304315485|ref|YP_003850632.1| - 1.2e-52 176.3 19.0 4.7e-35 119.7 4.6 2.5 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|304315485|ref|YP_003850632.1| - 3.3e-20 71.2 1.5 3.3e-20 71.2 1.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|304315485|ref|YP_003850632.1| - 5e-16 58.6 0.0 8.7e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.11 gi|304315485|ref|YP_003850632.1| - 0.0067 15.5 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|304315485|ref|YP_003850632.1| - 0.022 14.6 0.1 6.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Dynamin family SRPRB PF09439.5 gi|304315485|ref|YP_003850632.1| - 0.1 11.8 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoA PF04023.9 gi|304315486|ref|YP_003850633.1| - 3.9e-14 52.3 1.1 4.3e-14 52.2 0.7 1.0 1 0 0 1 1 1 1 FeoA domain CobN-Mg_chel PF02514.11 gi|304315487|ref|YP_003850634.1| - 0 1220.6 0.0 2.5e-198 661.0 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase DUF3479 PF11965.3 gi|304315487|ref|YP_003850634.1| - 0.016 14.9 0.0 0.052 13.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3479) Ribosomal_S7 PF00177.16 gi|304315487|ref|YP_003850634.1| - 0.18 11.4 0.0 1.7 8.2 0.0 2.5 3 0 0 3 3 3 0 Ribosomal protein S7p/S5e DZR PF12773.2 gi|304315488|ref|YP_003850635.1| - 0.083 12.7 5.0 0.16 11.8 3.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C2HC5 PF06221.8 gi|304315488|ref|YP_003850635.1| - 0.087 12.6 4.4 0.18 11.6 3.0 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|304315488|ref|YP_003850635.1| - 0.1 11.8 0.4 0.1 11.8 0.3 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Paired_CXXCH_1 PF09699.5 gi|304315488|ref|YP_003850635.1| - 0.27 10.7 3.3 0.47 10.0 1.6 1.9 1 1 1 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) zf-CSL PF05207.8 gi|304315488|ref|YP_003850635.1| - 0.36 10.3 2.7 1.7 8.2 0.7 2.1 2 0 0 2 2 2 0 CSL zinc finger zf-RING_3 PF14369.1 gi|304315488|ref|YP_003850635.1| - 0.96 9.5 6.1 2.5 8.1 0.8 2.4 1 1 1 2 2 2 0 zinc-finger HypA PF01155.14 gi|304315488|ref|YP_003850635.1| - 1.4 8.6 4.8 2.5 7.8 3.3 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|304315488|ref|YP_003850635.1| - 4.8 7.1 8.2 28 4.7 5.7 2.1 1 1 0 1 1 1 0 IBR domain Peptidase_M50 PF02163.17 gi|304315489|ref|YP_003850636.1| - 8.6e-30 103.1 2.3 8.6e-30 103.1 1.6 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ PF00595.19 gi|304315489|ref|YP_003850636.1| - 0.0003 20.8 0.0 0.00063 19.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PDZ_2 PF13180.1 gi|304315489|ref|YP_003850636.1| - 0.00074 19.3 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_1 PF12812.2 gi|304315489|ref|YP_003850636.1| - 0.036 13.9 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 PDZ-like domain MoeA_N PF03453.12 gi|304315490|ref|YP_003850637.1| - 9.9e-55 184.2 0.8 2e-54 183.3 0.1 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|304315490|ref|YP_003850637.1| - 2.4e-28 98.3 0.2 3.7e-28 97.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|304315490|ref|YP_003850637.1| - 4.4e-20 71.4 0.1 1.7e-19 69.4 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) DUF3846 PF12957.2 gi|304315490|ref|YP_003850637.1| - 0.052 13.2 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3846) ABC_tran PF00005.22 gi|304315491|ref|YP_003850638.1| - 7e-32 110.5 0.0 9.8e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|304315491|ref|YP_003850638.1| - 6.1e-15 55.9 0.1 4.2e-09 36.7 0.0 2.4 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|304315491|ref|YP_003850638.1| - 0.00064 20.1 0.2 0.001 19.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|304315491|ref|YP_003850638.1| - 0.001 19.4 0.0 0.0017 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|304315491|ref|YP_003850638.1| - 0.0049 15.9 0.0 0.46 9.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|304315491|ref|YP_003850638.1| - 0.015 14.8 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|304315491|ref|YP_003850638.1| - 0.015 15.2 0.0 0.023 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|304315491|ref|YP_003850638.1| - 0.021 14.0 0.1 4.4 6.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|304315491|ref|YP_003850638.1| - 0.034 12.6 0.0 1.4 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|304315491|ref|YP_003850638.1| - 0.05 14.4 0.2 0.13 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|304315491|ref|YP_003850638.1| - 0.07 12.8 0.1 0.49 10.0 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|304315491|ref|YP_003850638.1| - 0.094 12.4 0.1 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|304315491|ref|YP_003850638.1| - 0.12 12.5 0.0 0.63 10.2 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|304315491|ref|YP_003850638.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|304315492|ref|YP_003850639.1| - 8.6e-22 77.2 0.0 1.3e-21 76.7 0.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|304315492|ref|YP_003850639.1| - 7.3e-15 54.8 23.3 9.8e-14 51.1 16.1 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|304315492|ref|YP_003850639.1| - 5.1e-11 42.1 10.9 7.5e-11 41.6 7.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|304315492|ref|YP_003850639.1| - 9.7e-09 34.6 7.1 9.7e-09 34.6 4.9 3.0 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|304315492|ref|YP_003850639.1| - 0.0011 18.3 14.8 0.0011 18.3 10.3 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein Herpes_glycop PF01528.11 gi|304315492|ref|YP_003850639.1| - 1.4 7.5 9.6 0.54 8.9 4.6 1.7 2 0 0 2 2 2 0 Herpesvirus glycoprotein M ABC2_membrane_3 PF12698.2 gi|304315493|ref|YP_003850640.1| - 1.1e-28 100.2 16.7 1.6e-28 99.7 11.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|304315493|ref|YP_003850640.1| - 4.3e-15 55.3 13.4 1.3e-14 53.7 9.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|304315493|ref|YP_003850640.1| - 4.7e-11 42.2 27.7 6.3e-11 41.8 15.4 2.6 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|304315493|ref|YP_003850640.1| - 1.8e-10 40.3 21.0 4.3e-10 39.1 14.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|304315493|ref|YP_003850640.1| - 1.1 8.4 32.1 0.087 12.1 17.9 2.1 2 1 0 2 2 2 0 ABC-2 family transporter protein CTP_transf_1 PF01148.15 gi|304315494|ref|YP_003850641.1| - 3.9e-14 52.9 8.3 1.8e-10 40.9 3.2 2.2 1 1 1 2 2 2 2 Cytidylyltransferase family EmrE PF13536.1 gi|304315494|ref|YP_003850641.1| - 0.12 12.6 8.1 2.5 8.3 0.2 3.0 2 1 1 3 3 3 0 Multidrug resistance efflux transporter TH1 PF04858.8 gi|304315494|ref|YP_003850641.1| - 0.17 10.0 0.0 0.2 9.7 0.0 1.1 1 0 0 1 1 1 0 TH1 protein AIRS_C PF02769.17 gi|304315495|ref|YP_003850642.1| - 3.1e-55 186.3 2.3 3.5e-31 108.2 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|304315495|ref|YP_003850642.1| - 1e-47 160.3 1.7 4e-24 84.6 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain tRNA-synt_1 PF00133.17 gi|304315496|ref|YP_003850643.1| - 7.8e-216 717.7 0.0 1.2e-215 717.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|304315496|ref|YP_003850643.1| - 3.6e-32 111.2 0.1 9.4e-32 109.8 0.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|304315496|ref|YP_003850643.1| - 7.9e-28 97.2 0.5 1.1e-12 47.3 0.1 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|304315496|ref|YP_003850643.1| - 1e-06 28.0 0.0 3.4e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|304315496|ref|YP_003850643.1| - 1.6e-05 23.7 0.0 7e-05 21.6 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|304315496|ref|YP_003850643.1| - 3.6e-05 23.1 0.0 8e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 AdoMet_Synthase PF01941.14 gi|304315497|ref|YP_003850644.1| - 7.4e-184 610.7 3.0 8.4e-184 610.6 2.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF192 PF02643.10 gi|304315498|ref|YP_003850645.1| - 5.4e-22 77.5 0.0 7e-22 77.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HEAT_2 PF13646.1 gi|304315499|ref|YP_003850646.1| - 6.9e-36 122.3 9.6 8.8e-19 67.5 1.8 2.0 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|304315499|ref|YP_003850646.1| - 1.1e-19 68.8 5.9 1.3e-05 25.1 0.1 3.4 3 0 0 3 3 3 3 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|304315499|ref|YP_003850646.1| - 6.4e-18 63.1 1.3 7.3e-05 22.5 0.0 4.1 4 0 0 4 4 4 4 HEAT repeat HEAT_EZ PF13513.1 gi|304315499|ref|YP_003850646.1| - 2.1e-11 43.9 5.5 2.4e-06 27.8 0.7 3.2 3 0 0 3 3 3 2 HEAT-like repeat Arm PF00514.18 gi|304315499|ref|YP_003850646.1| - 1.7e-10 40.3 0.0 0.0023 17.6 0.0 3.9 3 1 1 4 4 4 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|304315499|ref|YP_003850646.1| - 4.1e-06 26.7 0.0 0.019 14.8 0.0 3.4 2 2 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|304315499|ref|YP_003850646.1| - 0.00012 20.5 0.0 0.0054 15.1 0.0 2.1 1 1 0 1 1 1 1 Adaptin N terminal region Cohesin_HEAT PF12765.2 gi|304315499|ref|YP_003850646.1| - 0.0015 18.4 0.2 12 6.0 0.0 4.1 4 0 0 4 4 4 1 HEAT repeat associated with sister chromatid cohesion Aconitase_B_N PF11791.3 gi|304315499|ref|YP_003850646.1| - 0.0048 16.7 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 Aconitate B N-terminal domain Flavoprotein PF02441.14 gi|304315500|ref|YP_003850647.1| - 5.6e-20 71.3 0.0 7.6e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Fer4_10 PF13237.1 gi|304315500|ref|YP_003850647.1| - 3.8e-07 29.7 5.7 7.2e-07 28.9 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315500|ref|YP_003850647.1| - 2.5e-06 27.6 6.2 0.0013 18.9 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|304315500|ref|YP_003850647.1| - 2.7e-06 26.7 1.1 2.7e-06 26.7 0.8 3.2 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315500|ref|YP_003850647.1| - 2.9e-06 27.5 23.2 0.00049 20.4 8.9 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315500|ref|YP_003850647.1| - 4.7e-06 27.2 5.1 0.0015 19.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304315500|ref|YP_003850647.1| - 2e-05 24.2 11.0 9.2e-05 22.1 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304315500|ref|YP_003850647.1| - 2.4e-05 24.2 3.0 0.0012 18.8 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315500|ref|YP_003850647.1| - 0.00044 19.9 11.5 0.0019 17.9 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|304315500|ref|YP_003850647.1| - 0.00046 20.2 12.3 0.0029 17.8 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|304315500|ref|YP_003850647.1| - 0.00076 19.7 6.2 0.0092 16.3 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|304315500|ref|YP_003850647.1| - 0.0058 16.4 2.6 0.011 15.6 1.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|304315500|ref|YP_003850647.1| - 0.025 15.1 5.5 0.025 15.1 3.8 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315500|ref|YP_003850647.1| - 0.053 13.3 11.7 0.35 10.7 8.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Glyco_trans_1_3 PF13528.1 gi|304315500|ref|YP_003850647.1| - 0.059 12.5 0.1 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 1 Glyco_transf_4 PF13439.1 gi|304315500|ref|YP_003850647.1| - 0.098 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Fer4_18 PF13746.1 gi|304315500|ref|YP_003850647.1| - 1 9.8 8.6 0.52 10.7 1.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315500|ref|YP_003850647.1| - 4.4 7.9 14.0 0.69 10.5 0.2 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain SHMT PF00464.14 gi|304315501|ref|YP_003850648.1| - 6.6e-83 278.3 0.0 8.6e-83 277.9 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|304315501|ref|YP_003850648.1| - 6.7e-12 45.0 0.0 1.6e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|304315501|ref|YP_003850648.1| - 4.9e-05 22.6 0.0 7e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|304315501|ref|YP_003850648.1| - 0.00019 20.3 0.0 0.00038 19.3 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|304315501|ref|YP_003850648.1| - 0.00036 19.4 0.0 0.00056 18.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Fer4 PF00037.22 gi|304315502|ref|YP_003850649.1| - 9.5e-23 78.8 39.4 9.4e-08 31.3 2.8 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|304315502|ref|YP_003850649.1| - 1.8e-17 63.4 26.4 5.9e-09 36.1 5.6 4.5 4 0 0 4 4 4 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|304315502|ref|YP_003850649.1| - 8.7e-17 61.6 2.1 6e-15 55.6 1.4 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|304315502|ref|YP_003850649.1| - 1.5e-14 53.4 34.9 9.1e-09 34.9 5.9 4.3 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|304315502|ref|YP_003850649.1| - 1.3e-12 47.7 35.3 3.3e-06 27.2 7.4 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|304315502|ref|YP_003850649.1| - 3.3e-12 46.9 28.2 0.0011 19.7 0.8 5.0 6 0 0 6 6 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|304315502|ref|YP_003850649.1| - 1.4e-11 43.5 39.7 5.2e-06 26.0 2.3 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|304315502|ref|YP_003850649.1| - 1.5e-09 37.7 26.8 0.00081 19.3 0.4 4.5 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|304315502|ref|YP_003850649.1| - 2.5e-09 36.5 52.0 2.3e-05 24.0 1.5 5.3 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|304315502|ref|YP_003850649.1| - 3.7e-08 33.0 44.0 0.0035 17.1 8.2 4.9 4 2 2 6 6 5 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|304315502|ref|YP_003850649.1| - 2.9e-07 30.9 28.8 0.00047 20.6 0.3 4.7 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|304315502|ref|YP_003850649.1| - 4e-07 30.2 31.6 0.0041 17.4 0.6 5.2 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|304315502|ref|YP_003850649.1| - 2.3e-06 27.4 40.5 0.00058 19.9 0.9 5.7 5 0 0 5 5 5 3 4Fe-4S binding domain Pyr_redox PF00070.22 gi|304315502|ref|YP_003850649.1| - 2.4e-06 27.8 0.6 0.0016 18.7 0.3 3.8 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|304315502|ref|YP_003850649.1| - 1.5e-05 24.0 0.0 2.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|304315502|ref|YP_003850649.1| - 2.7e-05 23.2 0.0 4.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.19 gi|304315502|ref|YP_003850649.1| - 8.1e-05 21.6 0.0 0.00039 19.4 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|304315502|ref|YP_003850649.1| - 0.0001 21.5 0.3 0.00023 20.3 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|304315502|ref|YP_003850649.1| - 0.00015 21.3 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_18 PF13746.1 gi|304315502|ref|YP_003850649.1| - 0.00018 21.8 40.9 0.0018 18.6 0.7 5.3 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|304315502|ref|YP_003850649.1| - 0.00027 21.2 28.3 0.092 13.1 0.7 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain NAD_binding_8 PF13450.1 gi|304315502|ref|YP_003850649.1| - 0.0003 20.7 0.0 0.00062 19.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|304315502|ref|YP_003850649.1| - 0.0053 15.8 0.0 0.0075 15.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|304315502|ref|YP_003850649.1| - 0.009 16.0 0.0 0.025 14.6 0.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_3 PF12798.2 gi|304315502|ref|YP_003850649.1| - 0.019 15.5 6.4 0.019 15.5 4.4 6.4 6 0 0 6 6 5 0 4Fe-4S binding domain DUF4033 PF13225.1 gi|304315502|ref|YP_003850649.1| - 0.023 14.2 0.1 0.023 14.2 0.0 2.3 2 0 0 2 2 1 0 Domain of unknown function (DUF4033) HI0933_like PF03486.9 gi|304315502|ref|YP_003850649.1| - 0.028 12.9 0.3 0.059 11.8 0.2 1.5 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.12 gi|304315502|ref|YP_003850649.1| - 0.04 13.0 0.0 0.081 12.0 0.0 1.4 1 0 0 1 1 1 0 Thi4 family Fer4_11 PF13247.1 gi|304315502|ref|YP_003850649.1| - 0.49 10.3 25.7 0.087 12.7 2.6 4.9 5 1 1 6 6 5 0 4Fe-4S dicluster domain Mem_trans PF03547.13 gi|304315503|ref|YP_003850650.1| - 2e-52 177.7 21.3 8.7e-27 93.3 1.4 2.0 1 1 1 2 2 2 2 Membrane transport protein Rad51 PF08423.6 gi|304315504|ref|YP_003850651.1| - 1.5e-95 318.9 0.2 1.9e-95 318.6 0.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|304315504|ref|YP_003850651.1| - 2.7e-13 49.6 0.1 3.9e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|304315504|ref|YP_003850651.1| - 7.8e-12 44.9 0.1 1.3e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|304315504|ref|YP_003850651.1| - 1.1e-11 44.3 0.1 1.7e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|304315504|ref|YP_003850651.1| - 1.4e-07 31.5 4.5 1.5e-07 31.4 1.0 2.5 3 1 0 3 3 3 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|304315504|ref|YP_003850651.1| - 3.4e-07 30.0 2.4 8e-07 28.8 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|304315504|ref|YP_003850651.1| - 1.3e-05 25.3 0.1 2.3e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|304315504|ref|YP_003850651.1| - 0.00049 19.9 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus CobU PF02283.11 gi|304315504|ref|YP_003850651.1| - 0.0031 16.9 1.4 0.051 12.9 1.0 2.3 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase TfoX_C PF04994.8 gi|304315504|ref|YP_003850651.1| - 0.0093 15.8 1.2 0.15 12.0 0.0 2.6 3 0 0 3 3 2 1 TfoX C-terminal domain Arch_ATPase PF01637.13 gi|304315504|ref|YP_003850651.1| - 0.019 14.6 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 Archaeal ATPase IMS_HHH PF11798.3 gi|304315504|ref|YP_003850651.1| - 0.029 14.4 0.0 0.11 12.5 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif HHH PF00633.18 gi|304315504|ref|YP_003850651.1| - 0.032 13.9 1.8 0.4 10.4 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif DnaB_C PF03796.10 gi|304315504|ref|YP_003850651.1| - 0.065 12.0 0.5 0.13 11.1 0.2 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_18 PF13238.1 gi|304315504|ref|YP_003850651.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain tRNA_anti-codon PF01336.20 gi|304315505|ref|YP_003850652.1| - 1.7e-42 143.1 15.2 1.8e-09 37.3 0.1 6.4 6 0 0 6 6 6 5 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|304315505|ref|YP_003850652.1| - 1.5e-18 66.8 0.0 2.4e-10 40.2 0.0 5.9 6 0 0 6 6 6 2 Replication factor-A C terminal domain HIN PF02760.10 gi|304315505|ref|YP_003850652.1| - 0.01 15.2 0.6 0.91 8.8 0.0 3.7 4 0 0 4 4 4 0 HIN-200/IF120x domain zf-ribbon_3 PF13248.1 gi|304315505|ref|YP_003850652.1| - 0.029 13.5 0.5 0.052 12.7 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2258 PF10015.4 gi|304315505|ref|YP_003850652.1| - 0.088 12.6 0.1 5.8 6.7 0.0 3.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2258) T6SS_Vgr PF13296.1 gi|304315505|ref|YP_003850652.1| - 0.12 12.2 0.0 5.7 6.8 0.0 3.0 3 0 0 3 3 3 0 Putative type VI secretion system Rhs element Vgr Molydop_binding PF01568.16 gi|304315505|ref|YP_003850652.1| - 0.12 12.2 2.5 14 5.5 0.0 4.0 4 0 0 4 4 4 0 Molydopterin dinucleotide binding domain zinc_ribbon_2 PF13240.1 gi|304315505|ref|YP_003850652.1| - 0.19 11.2 1.6 0.36 10.3 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|304315505|ref|YP_003850652.1| - 0.19 11.5 0.3 0.34 10.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|304315505|ref|YP_003850652.1| - 0.22 11.3 0.8 0.38 10.5 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|304315505|ref|YP_003850652.1| - 0.25 10.6 2.1 0.68 9.3 1.5 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Aconitase PF00330.15 gi|304315506|ref|YP_003850653.1| - 1.7e-87 293.8 1.9 2.3e-58 197.8 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|304315506|ref|YP_003850653.1| - 0.014 13.9 0.0 0.022 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|304315507|ref|YP_003850654.1| - 3.2e-21 75.8 0.0 3.9e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|304315507|ref|YP_003850654.1| - 0.049 13.0 0.1 0.36 10.2 0.0 2.1 1 1 1 2 2 2 0 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|304315508|ref|YP_003850655.1| - 1.1e-104 350.1 0.0 1.2e-104 349.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.8 gi|304315508|ref|YP_003850655.1| - 0.0047 16.8 0.0 0.031 14.2 0.0 2.0 2 0 0 2 2 2 1 Antirestriction protein Aminotran_5 PF00266.14 gi|304315509|ref|YP_003850656.1| - 1.7e-127 425.1 0.0 2e-127 425.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|304315509|ref|YP_003850656.1| - 1e-11 44.4 0.0 7e-10 38.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|304315509|ref|YP_003850656.1| - 2e-10 40.2 0.1 3.4e-10 39.5 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|304315509|ref|YP_003850656.1| - 1.2e-07 31.1 0.0 4.2e-06 26.1 0.0 2.2 1 1 1 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|304315509|ref|YP_003850656.1| - 4.9e-05 21.7 0.0 8.3e-05 21.0 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.11 gi|304315509|ref|YP_003850656.1| - 0.014 14.1 0.1 0.019 13.6 0.1 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein DMRL_synthase PF00885.14 gi|304315510|ref|YP_003850657.1| - 2.4e-37 127.7 0.6 2.7e-37 127.6 0.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF1743 PF08489.6 gi|304315511|ref|YP_003850658.1| - 1.7e-25 89.0 0.5 4.1e-24 84.6 0.0 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) Glycos_transf_2 PF00535.21 gi|304315512|ref|YP_003850659.1| - 2.4e-29 102.1 0.0 3.9e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|304315512|ref|YP_003850659.1| - 1e-10 41.7 0.2 1.8e-10 41.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|304315512|ref|YP_003850659.1| - 2.3e-06 26.8 0.0 4.3e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CDC48_N PF02359.13 gi|304315512|ref|YP_003850659.1| - 4.7e-05 23.2 0.4 0.0005 19.9 0.0 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Glyco_tranf_2_4 PF13704.1 gi|304315512|ref|YP_003850659.1| - 0.0054 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.8 gi|304315512|ref|YP_003850659.1| - 0.017 14.3 0.1 0.066 12.4 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF374) Corona_M PF01635.13 gi|304315512|ref|YP_003850659.1| - 0.15 10.9 1.6 0.16 10.9 0.2 1.6 2 0 0 2 2 2 0 Coronavirus M matrix/glycoprotein DUF4131 PF13567.1 gi|304315512|ref|YP_003850659.1| - 3.5 6.9 6.6 10 5.4 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) AIRC PF00731.15 gi|304315513|ref|YP_003850660.1| - 1.5e-90 300.2 0.2 1.9e-49 166.8 0.0 2.0 2 0 0 2 2 2 2 AIR carboxylase UbiD PF01977.11 gi|304315514|ref|YP_003850661.1| - 4.6e-120 400.8 0.6 5.7e-120 400.4 0.4 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Radical_SAM PF04055.16 gi|304315515|ref|YP_003850662.1| - 2e-19 70.3 0.0 1.7e-18 67.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|304315515|ref|YP_003850662.1| - 2.2e-06 27.8 0.0 3.9e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|304315515|ref|YP_003850662.1| - 0.05 13.6 0.4 0.1 12.6 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain RNA_POL_M_15KD PF02150.11 gi|304315515|ref|YP_003850662.1| - 0.3 10.8 0.1 0.3 10.8 0.1 2.7 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|304315515|ref|YP_003850662.1| - 1.3 9.1 8.4 0.12 12.3 0.4 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|304315515|ref|YP_003850662.1| - 1.5 8.6 0.0 1.5 8.6 0.0 2.9 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) AIRS PF00586.19 gi|304315516|ref|YP_003850663.1| - 4.1e-18 65.4 0.0 9.3e-18 64.2 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|304315516|ref|YP_003850663.1| - 1.8e-16 60.5 0.2 2.5e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain CbiX PF01903.12 gi|304315517|ref|YP_003850664.1| - 4.2e-33 113.6 0.7 5e-33 113.3 0.5 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|304315517|ref|YP_003850664.1| - 3e-07 29.8 0.2 3.3e-07 29.6 0.2 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|304315517|ref|YP_003850664.1| - 0.00046 19.2 0.0 0.0017 17.4 0.0 1.8 2 0 0 2 2 2 1 Ferrochelatase DUF35 PF01796.12 gi|304315518|ref|YP_003850665.1| - 4e-20 71.8 0.0 5.8e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|304315518|ref|YP_003850665.1| - 1.1e-07 31.5 0.6 1.7e-07 30.9 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|304315518|ref|YP_003850665.1| - 0.0078 15.7 3.1 0.13 11.8 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|304315518|ref|YP_003850665.1| - 0.0082 15.8 3.2 0.11 12.1 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|304315518|ref|YP_003850665.1| - 0.067 13.0 0.5 0.11 12.3 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|304315518|ref|YP_003850665.1| - 0.091 12.5 0.1 0.55 10.0 0.3 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.9 gi|304315518|ref|YP_003850665.1| - 0.17 11.5 1.4 2.5 7.8 0.0 2.7 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS RRN7 PF11781.3 gi|304315518|ref|YP_003850665.1| - 1.1 8.8 3.6 6 6.4 0.1 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 MgtE PF01769.11 gi|304315522|ref|YP_003850669.1| - 2.1e-43 147.8 21.8 3e-33 114.9 2.8 2.9 3 0 0 3 3 3 2 Divalent cation transporter MerC PF03203.9 gi|304315522|ref|YP_003850669.1| - 7.9 6.8 15.1 0.082 13.2 2.5 3.4 2 2 1 3 3 3 0 MerC mercury resistance protein TrkA_C PF02080.16 gi|304315523|ref|YP_003850670.1| - 1e-16 60.2 0.0 2.5e-16 59.0 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.14 gi|304315523|ref|YP_003850670.1| - 2.7e-10 40.5 5.9 4.8e-10 39.7 4.1 1.4 1 0 0 1 1 1 1 PhoU domain TMF_TATA_bd PF12325.3 gi|304315523|ref|YP_003850670.1| - 0.11 12.2 2.3 0.17 11.6 1.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding BRE1 PF08647.6 gi|304315523|ref|YP_003850670.1| - 0.39 10.7 3.5 1.2 9.1 0.5 2.3 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase TP_methylase PF00590.15 gi|304315524|ref|YP_003850671.1| - 7.9e-34 117.1 0.3 1.6e-33 116.2 0.1 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases zf-like PF04071.7 gi|304315524|ref|YP_003850671.1| - 1.3e-27 95.2 6.6 2.2e-27 94.5 4.6 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain MoCF_biosynth PF00994.19 gi|304315524|ref|YP_003850671.1| - 0.13 11.6 0.0 1.1 8.6 0.0 2.4 3 1 0 3 3 3 0 Probable molybdopterin binding domain DUF3992 PF13157.1 gi|304315525|ref|YP_003850672.1| - 0.088 13.0 1.4 0.19 11.9 0.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) DNA_pol_E_B PF04042.11 gi|304315526|ref|YP_003850673.1| - 1.3e-15 57.2 0.0 1.9e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|304315526|ref|YP_003850673.1| - 2.5e-13 50.1 0.1 6e-13 48.9 0.1 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|304315526|ref|YP_003850673.1| - 1.2e-10 41.1 0.3 2e-10 40.3 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|304315526|ref|YP_003850673.1| - 2.6e-05 24.0 0.1 6.7e-05 22.6 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.1 gi|304315526|ref|YP_003850673.1| - 0.0023 17.5 0.2 0.005 16.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4539) DUF217 PF02697.9 gi|304315526|ref|YP_003850673.1| - 0.04 14.1 0.3 0.13 12.5 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 Aldolase_II PF00596.16 gi|304315527|ref|YP_003850674.1| - 1.2e-46 158.6 0.0 1.3e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain UPF0147 PF03685.8 gi|304315528|ref|YP_003850675.1| - 2.1e-35 120.4 3.5 2.2e-35 120.3 2.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) TEX13 PF15186.1 gi|304315528|ref|YP_003850675.1| - 0.039 13.5 0.0 0.088 12.3 0.0 1.6 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family CbiG_N PF11760.3 gi|304315529|ref|YP_003850676.1| - 1.1e-34 117.9 0.2 2.3e-34 116.9 0.1 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|304315529|ref|YP_003850676.1| - 3.5e-31 107.9 0.2 5.3e-31 107.3 0.2 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_mid PF11761.3 gi|304315529|ref|YP_003850676.1| - 0.00081 19.5 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 Cobalamin biosynthesis central region CobD_Cbib PF03186.8 gi|304315530|ref|YP_003850677.1| - 6.6e-100 333.9 0.3 7.5e-100 333.8 0.2 1.0 1 0 0 1 1 1 1 CobD/Cbib protein DUF2299 PF10061.4 gi|304315531|ref|YP_003850678.1| - 6.4e-49 164.9 0.1 7.4e-49 164.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) HTH_28 PF13518.1 gi|304315533|ref|YP_003850679.1| - 2.8e-05 24.0 0.1 7.4e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|304315533|ref|YP_003850679.1| - 0.00039 20.6 0.1 0.0011 19.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|304315533|ref|YP_003850679.1| - 0.00058 19.6 0.0 0.0014 18.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|304315533|ref|YP_003850679.1| - 0.00081 18.9 0.2 0.0044 16.6 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_19 PF12844.2 gi|304315533|ref|YP_003850679.1| - 0.019 15.0 0.0 0.06 13.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DEAD PF00270.24 gi|304315533|ref|YP_003850679.1| - 0.034 13.6 0.0 0.31 10.5 0.0 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF4349 PF14257.1 gi|304315533|ref|YP_003850679.1| - 0.038 13.2 0.2 0.53 9.4 0.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) HTH_Tnp_1 PF01527.15 gi|304315533|ref|YP_003850679.1| - 0.046 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Transposase HTH_38 PF13936.1 gi|304315533|ref|YP_003850679.1| - 0.046 13.2 0.0 0.18 11.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|304315533|ref|YP_003850679.1| - 0.051 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|304315533|ref|YP_003850679.1| - 0.054 13.7 0.2 0.2 11.8 0.0 2.0 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|304315533|ref|YP_003850679.1| - 0.056 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF1323 PF07037.6 gi|304315533|ref|YP_003850679.1| - 0.073 13.2 0.2 0.74 9.9 0.0 2.5 2 0 0 2 2 2 0 Putative transcription regulator (DUF1323) HTH_36 PF13730.1 gi|304315533|ref|YP_003850679.1| - 0.074 13.1 0.0 0.3 11.2 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|304315533|ref|YP_003850679.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Phage_AlpA PF05930.7 gi|304315533|ref|YP_003850679.1| - 0.14 11.9 0.0 0.37 10.5 0.0 1.7 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_IclR PF09339.5 gi|304315533|ref|YP_003850679.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain RAP1 PF07218.6 gi|304315535|ref|YP_003850681.1| - 0.058 11.4 3.3 0.056 11.5 2.3 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Flp_N PF03930.9 gi|304315536|ref|YP_003850682.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Recombinase Flp protein N-terminus