#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|304315533|ref|YP_003850679.1|	804	HTH_28	Helix-turn-helix	22.6	0.0	8.5e-08	7.4e-05	14	47	473	508	470	512	0.86
gi|304315533|ref|YP_003850679.1|	804	HTH_17	Helix-turn-helix	19.1	0.0	1.3e-06	0.0011	7	34	477	510	475	517	0.73
gi|304315533|ref|YP_003850679.1|	804	HTH_3	Helix-turn-helix	18.3	0.0	1.7e-06	0.0014	14	35	476	497	473	502	0.86
gi|304315533|ref|YP_003850679.1|	804	HTH_23	Homeodomain-like	-1.1	0.0	1.8	1.6e+03	11	27	367	384	366	402	0.76
gi|304315533|ref|YP_003850679.1|	804	HTH_23	Homeodomain-like	16.6	0.0	5.1e-06	0.0044	20	40	474	494	473	506	0.78
gi|304315533|ref|YP_003850679.1|	804	HTH_19	Helix-turn-helix	13.3	0.0	6.9e-05	0.06	18	41	477	500	473	503	0.88
gi|304315533|ref|YP_003850679.1|	804	DEAD	DEAD/DEAH	10.5	0.0	0.00035	0.31	19	113	192	427	167	438	0.79
gi|304315533|ref|YP_003850679.1|	804	DUF4349	Domain	9.4	0.1	0.00061	0.53	140	183	760	803	698	804	0.68
gi|304315533|ref|YP_003850679.1|	804	HTH_Tnp_1	Transposase	12.3	0.0	0.00013	0.12	25	47	473	495	471	524	0.84
gi|304315533|ref|YP_003850679.1|	804	HTH_38	Helix-turn-helix	11.3	0.0	0.00021	0.18	24	41	475	492	472	493	0.86
gi|304315533|ref|YP_003850679.1|	804	HTH_31	Helix-turn-helix	12.6	0.0	0.00013	0.11	16	39	473	496	471	501	0.90
gi|304315533|ref|YP_003850679.1|	804	HTH_26	Cro/C1-type	11.8	0.0	0.00023	0.2	12	34	473	495	467	500	0.89
gi|304315533|ref|YP_003850679.1|	804	HTH_29	Winged	12.4	0.0	0.00014	0.12	14	52	473	512	468	522	0.81
gi|304315533|ref|YP_003850679.1|	804	DUF1323	Putative	-0.4	0.0	1.4	1.2e+03	19	85	391	459	376	464	0.68
gi|304315533|ref|YP_003850679.1|	804	DUF1323	Putative	9.9	0.0	0.00085	0.74	4	36	475	507	473	518	0.77
gi|304315533|ref|YP_003850679.1|	804	HTH_36	Helix-turn-helix	11.2	0.0	0.00035	0.3	26	47	472	493	463	494	0.89
gi|304315533|ref|YP_003850679.1|	804	HTH_Tnp_4	Helix-turn-helix	11.0	0.0	0.00027	0.23	20	41	472	493	470	494	0.94
gi|304315533|ref|YP_003850679.1|	804	Phage_AlpA	Prophage	10.5	0.0	0.00042	0.37	10	25	478	493	475	501	0.86
gi|304315533|ref|YP_003850679.1|	804	HTH_IclR	IclR	10.7	0.0	0.00034	0.3	20	38	473	491	466	494	0.82
gi|304315535|ref|YP_003850681.1|	151	RAP1	Rhoptry-associated	11.5	2.3	3.8e-06	0.056	129	206	11	85	5	150	0.64
gi|304315536|ref|YP_003850682.1|	130	Flp_N	Recombinase	11.2	0.0	1.5e-05	0.22	28	65	14	51	10	63	0.85