# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- TPR_2 PF07719.17 gi|88601324|ref|YP_501502.1| - 1.2e-15 56.2 0.2 9.8e-05 22.2 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88601324|ref|YP_501502.1| - 1.3e-13 51.3 0.0 7.3e-09 36.0 0.0 1.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88601324|ref|YP_501502.1| - 1.6e-13 49.8 2.0 2.5e-05 23.9 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88601324|ref|YP_501502.1| - 3e-13 49.2 0.2 3.7e-07 30.1 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88601324|ref|YP_501502.1| - 2.1e-11 43.1 0.8 0.00039 20.4 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88601324|ref|YP_501502.1| - 3.7e-11 42.5 0.2 3.3e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 TPR repeat TPR_14 PF13428.6 gi|88601324|ref|YP_501502.1| - 2e-08 34.3 0.0 0.0016 19.1 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88601324|ref|YP_501502.1| - 7.6e-07 29.7 0.0 1.9e-06 28.4 0.0 1.6 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88601324|ref|YP_501502.1| - 7.2e-06 26.2 0.1 0.00039 20.6 0.1 2.7 1 1 1 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88601324|ref|YP_501502.1| - 6.1e-05 22.1 0.1 0.023 13.7 0.0 1.6 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.6 gi|88601324|ref|YP_501502.1| - 0.00012 22.5 0.0 0.009 16.5 0.0 2.0 1 1 1 2 2 2 1 Alkyl sulfatase dimerisation TPR_6 PF13174.6 gi|88601324|ref|YP_501502.1| - 0.00013 22.3 0.1 0.25 12.1 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88601324|ref|YP_501502.1| - 0.00046 20.3 0.0 0.00076 19.7 0.0 1.4 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|88601324|ref|YP_501502.1| - 0.00078 19.3 0.2 0.69 10.1 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88601324|ref|YP_501502.1| - 0.0018 18.3 0.0 0.91 9.6 0.0 2.2 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|88601324|ref|YP_501502.1| - 0.0018 18.7 0.0 0.003 18.0 0.0 1.4 1 1 0 1 1 1 1 Bacterial transcriptional activator domain DUF5588 PF17826.1 gi|88601324|ref|YP_501502.1| - 0.014 14.3 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5588) TPR_10 PF13374.6 gi|88601324|ref|YP_501502.1| - 0.018 14.9 0.2 2.6 8.0 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88601324|ref|YP_501502.1| - 0.021 14.3 0.0 0.025 14.0 0.0 1.1 1 0 0 1 1 1 0 Coatomer epsilon subunit DHR-2 PF06920.13 gi|88601324|ref|YP_501502.1| - 0.021 13.5 0.0 0.025 13.2 0.0 1.0 1 0 0 1 1 1 0 Dock homology region 2 MIT PF04212.18 gi|88601324|ref|YP_501502.1| - 0.026 14.6 0.5 9.3 6.4 0.0 2.6 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain Phage_gp53 PF11246.8 gi|88601324|ref|YP_501502.1| - 0.12 12.0 0.2 0.17 11.5 0.2 1.3 1 1 0 1 1 1 0 Base plate wedge protein 53 CheW PF01584.19 gi|88601325|ref|YP_501503.1| - 5.4e-26 90.9 0.1 6.6e-26 90.6 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain PAS_9 PF13426.7 gi|88601326|ref|YP_501504.1| - 6.8e-50 167.7 0.0 1.7e-12 47.5 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|88601326|ref|YP_501504.1| - 3.4e-41 139.9 0.0 1.5e-09 38.1 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|88601326|ref|YP_501504.1| - 1.3e-34 118.6 0.2 8e-10 38.7 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|88601326|ref|YP_501504.1| - 9.7e-31 105.3 0.1 4.1e-10 39.5 0.0 5.1 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|88601326|ref|YP_501504.1| - 1.5e-22 79.9 0.2 1.9e-21 76.3 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.6 gi|88601326|ref|YP_501504.1| - 4.8e-20 72.3 0.0 2e-19 70.3 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|88601326|ref|YP_501504.1| - 2.1e-19 69.6 0.0 0.00015 21.9 0.0 5.2 5 0 0 5 5 5 3 PAS fold HATPase_c PF02518.26 gi|88601326|ref|YP_501504.1| - 4.8e-11 43.2 0.1 5.1e-08 33.4 0.0 3.6 3 1 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|88601326|ref|YP_501504.1| - 9.1e-07 29.0 0.0 0.79 9.9 0.0 5.2 3 1 1 4 4 4 2 PAS fold GAF PF01590.26 gi|88601326|ref|YP_501504.1| - 7.8e-06 26.6 0.0 4.3e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|88601326|ref|YP_501504.1| - 0.03 14.7 0.0 0.091 13.1 0.0 1.9 1 0 0 1 1 1 0 GAF domain PAS_4 PF08448.10 gi|88601327|ref|YP_501505.1| - 9.4e-83 273.7 0.4 1.8e-14 53.9 0.0 8.7 8 1 0 8 8 8 8 PAS fold PAS PF00989.25 gi|88601327|ref|YP_501505.1| - 6.5e-74 245.2 1.6 4.2e-19 68.6 0.1 8.8 9 0 0 9 9 9 6 PAS fold PAS_9 PF13426.7 gi|88601327|ref|YP_501505.1| - 2.1e-67 223.9 5.2 3e-16 59.6 0.0 8.9 8 1 1 9 9 9 8 PAS domain PAS_8 PF13188.7 gi|88601327|ref|YP_501505.1| - 5.1e-52 173.2 0.8 8.8e-10 38.4 0.0 7.7 7 0 0 7 7 7 7 PAS domain PAS_3 PF08447.12 gi|88601327|ref|YP_501505.1| - 3.3e-43 145.9 1.3 1.6e-11 44.3 0.0 7.7 7 0 0 7 7 7 6 PAS fold PAS_7 PF12860.7 gi|88601327|ref|YP_501505.1| - 6.5e-14 52.1 7.0 0.0025 17.9 0.3 7.7 8 1 0 8 8 8 3 PAS fold PAS_10 PF13596.6 gi|88601327|ref|YP_501505.1| - 2e-12 47.6 1.4 0.0019 18.8 0.1 6.5 7 1 1 8 8 8 3 PAS domain HATPase_c PF02518.26 gi|88601327|ref|YP_501505.1| - 2.5e-06 27.9 0.1 1e-05 26.0 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88601327|ref|YP_501505.1| - 0.00015 21.8 0.1 0.18 12.0 0.0 4.2 4 0 0 4 4 4 1 PAS domain HisKA PF00512.25 gi|88601327|ref|YP_501505.1| - 0.01 15.9 0.1 0.01 15.9 0.1 5.4 6 0 0 6 6 6 0 His Kinase A (phospho-acceptor) domain NOGCT PF08155.11 gi|88601327|ref|YP_501505.1| - 0.063 13.3 0.2 19 5.3 0.0 3.7 3 0 0 3 3 3 0 NOGCT (NUC087) domain PAS_4 PF08448.10 gi|88601328|ref|YP_501506.1| - 4.1e-27 94.6 0.0 2e-14 53.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|88601328|ref|YP_501506.1| - 6.2e-19 68.1 0.0 5.9e-08 32.7 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88601328|ref|YP_501506.1| - 1.4e-17 63.8 0.0 7.5e-08 32.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|88601328|ref|YP_501506.1| - 2.4e-07 30.9 0.0 0.00051 20.3 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88601328|ref|YP_501506.1| - 7e-05 22.8 0.1 0.00055 19.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|88601328|ref|YP_501506.1| - 0.00043 20.3 0.2 0.00043 20.3 0.2 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|88601328|ref|YP_501506.1| - 0.012 16.2 0.0 0.083 13.5 0.0 2.4 2 1 0 2 2 2 0 PAS domain PAS_7 PF12860.7 gi|88601328|ref|YP_501506.1| - 0.016 15.4 0.1 16 5.6 0.0 3.5 3 1 0 3 3 3 0 PAS fold DUF4200 PF13863.6 gi|88601328|ref|YP_501506.1| - 1.6 9.2 12.5 0.26 11.7 2.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) SlyX PF04102.12 gi|88601328|ref|YP_501506.1| - 1.9 9.2 11.8 1.2 9.8 4.9 3.0 3 0 0 3 3 3 0 SlyX CheW PF01584.19 gi|88601329|ref|YP_501507.1| - 1.5e-31 108.8 1.2 1.7e-31 108.7 1.2 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|88601330|ref|YP_501508.1| - 2.2e-43 148.1 53.8 1.1e-42 145.8 23.7 5.0 3 2 3 6 6 6 4 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|88601330|ref|YP_501508.1| - 1.3e-08 35.0 35.2 0.0072 16.6 0.9 7.7 2 2 5 7 7 7 4 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|88601330|ref|YP_501508.1| - 0.00029 21.2 0.2 14 6.2 0.0 5.8 3 2 2 5 5 5 0 HAMP domain DUF1664 PF07889.12 gi|88601330|ref|YP_501508.1| - 0.0033 17.5 28.0 0.044 13.8 0.6 5.6 4 2 1 6 6 6 2 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 gi|88601330|ref|YP_501508.1| - 0.0041 17.4 17.4 14 6.1 1.3 6.5 3 1 3 6 6 6 0 Syntaxin-like protein ANAPC4 PF12896.7 gi|88601330|ref|YP_501508.1| - 0.0063 16.0 1.1 0.43 10.0 0.1 3.1 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 4 RPW8 PF05659.11 gi|88601330|ref|YP_501508.1| - 0.026 14.2 3.1 17 5.1 0.1 4.7 4 2 1 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Syntaxin-6_N PF09177.11 gi|88601330|ref|YP_501508.1| - 0.027 15.0 17.7 0.39 11.3 0.9 4.9 3 2 2 5 5 5 0 Syntaxin 6, N-terminal UPF0242 PF06785.11 gi|88601330|ref|YP_501508.1| - 0.12 12.4 4.2 0.075 13.1 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CREPT PF16566.5 gi|88601330|ref|YP_501508.1| - 0.14 12.3 6.6 0.42 10.8 1.4 3.5 3 2 0 3 3 2 0 Cell-cycle alteration and expression-elevated protein in tumour Tweety PF04906.13 gi|88601330|ref|YP_501508.1| - 0.23 10.1 11.8 0.061 12.0 1.4 3.2 3 0 0 3 3 3 0 Tweety Sigma70_ner PF04546.13 gi|88601330|ref|YP_501508.1| - 0.28 11.0 19.0 0.015 15.2 2.2 3.4 3 1 0 3 3 3 0 Sigma-70, non-essential region PilJ PF13675.6 gi|88601330|ref|YP_501508.1| - 0.42 10.7 14.4 0.079 13.0 1.7 4.2 2 1 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Mce4_CUP1 PF11887.8 gi|88601330|ref|YP_501508.1| - 0.52 9.7 10.2 3.6 7.0 1.6 3.7 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative BLOC1_2 PF10046.9 gi|88601330|ref|YP_501508.1| - 0.61 10.4 23.8 0.73 10.2 0.6 5.5 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|88601330|ref|YP_501508.1| - 0.71 8.4 24.3 0.64 8.6 9.6 2.6 1 1 1 2 2 2 0 AAA domain COG2 PF06148.11 gi|88601330|ref|YP_501508.1| - 0.95 9.6 23.1 13 5.8 0.3 6.6 4 2 3 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 MRP-S28 PF10213.9 gi|88601330|ref|YP_501508.1| - 1.2 9.5 3.8 11 6.5 0.0 3.1 3 0 0 3 3 3 0 Mitochondrial ribosomal subunit protein TMPIT PF07851.13 gi|88601330|ref|YP_501508.1| - 1.3 8.2 12.3 3.4 6.8 3.1 3.1 1 1 2 4 4 4 0 TMPIT-like protein Fib_alpha PF08702.10 gi|88601330|ref|YP_501508.1| - 1.8 8.7 18.9 0.69 10.1 2.6 4.5 4 2 2 6 6 5 0 Fibrinogen alpha/beta chain family DASH_Dad4 PF08650.10 gi|88601330|ref|YP_501508.1| - 3 7.9 5.7 4.6 7.3 0.1 4.0 3 1 1 4 4 3 0 DASH complex subunit Dad4 FlgN PF05130.12 gi|88601330|ref|YP_501508.1| - 4.2 7.9 24.1 1.3 9.5 4.1 3.6 2 1 2 4 4 3 0 FlgN protein Laminin_II PF06009.12 gi|88601330|ref|YP_501508.1| - 4.8 7.2 38.2 0.89 9.6 5.6 5.4 3 1 3 6 6 6 0 Laminin Domain II HisKA PF00512.25 gi|88601330|ref|YP_501508.1| - 5 7.2 9.8 11 6.2 0.1 5.2 6 1 0 6 6 4 0 His Kinase A (phospho-acceptor) domain LOH1CR12 PF10158.9 gi|88601330|ref|YP_501508.1| - 5.9 6.9 12.7 1.6 8.7 1.4 4.1 2 2 2 4 4 4 0 Tumour suppressor protein BORCS7 PF16088.5 gi|88601330|ref|YP_501508.1| - 6.1 7.2 21.6 13 6.1 1.3 4.8 3 1 1 4 4 4 0 BLOC-1-related complex sub-unit 7 Vps53_N PF04100.12 gi|88601330|ref|YP_501508.1| - 6.9 5.5 20.9 0.46 9.4 2.6 3.6 2 2 2 4 4 4 0 Vps53-like, N-terminal DDE_Tnp_1_6 PF13751.6 gi|88601331|ref|YP_501509.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601331|ref|YP_501509.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601331|ref|YP_501509.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601331|ref|YP_501509.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain PAS_4 PF08448.10 gi|88601332|ref|YP_501510.1| - 1.8e-28 99.0 0.0 8.4e-14 51.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88601332|ref|YP_501510.1| - 5.7e-28 97.2 0.4 7.1e-13 48.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88601332|ref|YP_501510.1| - 7.6e-19 67.8 0.2 3.7e-08 33.4 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|88601332|ref|YP_501510.1| - 5.6e-08 32.6 0.0 0.0024 17.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|88601332|ref|YP_501510.1| - 1.1e-05 26.0 0.0 0.044 14.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain Mis14 PF08641.12 gi|88601332|ref|YP_501510.1| - 0.00052 20.3 0.0 6.6 7.1 0.0 3.5 3 0 0 3 3 3 2 Kinetochore protein Mis14 like HAMP PF00672.25 gi|88601332|ref|YP_501510.1| - 0.00082 19.7 13.3 67 4.0 0.0 9.2 4 2 7 11 11 10 0 HAMP domain MRP-S28 PF10213.9 gi|88601332|ref|YP_501510.1| - 0.0013 19.1 1.8 9.9 6.6 0.1 3.3 3 0 0 3 3 3 1 Mitochondrial ribosomal subunit protein REF PF05755.12 gi|88601332|ref|YP_501510.1| - 0.007 16.2 0.0 55 3.5 0.0 4.3 4 0 0 4 4 4 0 Rubber elongation factor protein (REF) DUF5309 PF17236.2 gi|88601332|ref|YP_501510.1| - 0.013 14.9 0.4 16 4.7 0.0 3.3 3 0 0 3 3 3 0 Family of unknown function (DUF5309) Baculo_PEP_C PF04513.12 gi|88601332|ref|YP_501510.1| - 0.022 14.8 13.3 4.3 7.4 1.1 4.6 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2443 PF10398.9 gi|88601332|ref|YP_501510.1| - 0.081 13.0 0.3 6.1 7.0 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2443) FIVAR PF07554.13 gi|88601332|ref|YP_501510.1| - 0.11 13.3 14.6 8.5 7.2 0.9 4.2 4 0 0 4 4 3 0 FIVAR domain PBECR1 PF18809.1 gi|88601332|ref|YP_501510.1| - 0.15 12.7 2.2 1.2e+02 3.4 0.0 4.0 4 0 0 4 4 4 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 PAS_9 PF13426.7 gi|88601333|ref|YP_501511.1| - 4.6e-54 181.1 0.0 1.4e-14 54.2 0.0 7.5 7 0 0 7 7 7 6 PAS domain PAS PF00989.25 gi|88601333|ref|YP_501511.1| - 2.9e-50 169.0 0.0 1.7e-11 44.1 0.0 7.5 7 1 0 7 7 7 6 PAS fold PAS_3 PF08447.12 gi|88601333|ref|YP_501511.1| - 1.4e-41 140.7 4.2 6.7e-14 51.9 0.1 7.2 7 0 0 7 7 7 5 PAS fold PAS_4 PF08448.10 gi|88601333|ref|YP_501511.1| - 9.6e-40 135.3 0.0 8.6e-08 32.4 0.0 6.9 7 0 0 7 7 7 6 PAS fold PAS_8 PF13188.7 gi|88601333|ref|YP_501511.1| - 1.2e-23 82.6 0.0 3.8e-05 23.6 0.0 6.7 6 0 0 6 6 6 5 PAS domain dCache_1 PF02743.18 gi|88601333|ref|YP_501511.1| - 1.4e-06 28.2 1.8 1.1 9.0 0.1 4.8 3 1 0 4 4 4 2 Cache domain HTH_IclR PF09339.10 gi|88601333|ref|YP_501511.1| - 0.0024 17.7 0.1 0.0051 16.6 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain PAS_10 PF13596.6 gi|88601333|ref|YP_501511.1| - 0.0024 18.4 0.0 8.7 7.0 0.0 3.7 4 0 0 4 4 3 2 PAS domain HTH_5 PF01022.20 gi|88601333|ref|YP_501511.1| - 0.004 17.0 0.1 0.0097 15.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|88601333|ref|YP_501511.1| - 0.007 16.3 0.3 0.037 14.0 0.1 2.4 2 0 0 2 2 2 1 HTH domain GYF PF02213.16 gi|88601333|ref|YP_501511.1| - 0.016 14.9 0.0 11 5.8 0.0 3.0 3 0 0 3 3 3 0 GYF domain CREPT PF16566.5 gi|88601333|ref|YP_501511.1| - 0.019 15.2 2.6 1.7 8.8 2.3 2.4 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour TBPIP PF07106.13 gi|88601333|ref|YP_501511.1| - 0.026 14.5 0.0 0.064 13.2 0.0 1.7 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_24 PF13412.6 gi|88601333|ref|YP_501511.1| - 0.032 13.8 0.1 0.094 12.3 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Elongin_A PF06881.11 gi|88601333|ref|YP_501511.1| - 0.13 12.8 1.6 0.57 10.7 0.4 2.5 2 0 0 2 2 2 0 RNA polymerase II transcription factor SIII (Elongin) subunit A NAD_kinase PF01513.21 gi|88601333|ref|YP_501511.1| - 0.16 11.2 0.1 6.2 5.9 0.0 2.3 2 0 0 2 2 2 0 ATP-NAD kinase AAA-ATPase_like PF09820.9 gi|88601334|ref|YP_501512.1| - 5.6e-102 340.9 0.0 1e-101 340.1 0.0 1.4 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601334|ref|YP_501512.1| - 1.8e-31 108.2 0.2 3.1e-31 107.4 0.2 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PAS_3 PF08447.12 gi|88601334|ref|YP_501512.1| - 0.047 14.0 0.1 0.11 12.9 0.1 1.6 1 0 0 1 1 1 0 PAS fold MCPsignal PF00015.21 gi|88601335|ref|YP_501513.1| - 2.9e-40 137.9 23.7 2.9e-40 137.9 23.7 4.4 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88601335|ref|YP_501513.1| - 2.3e-30 105.5 0.1 2.3e-30 105.5 0.1 4.8 3 1 3 6 6 6 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88601335|ref|YP_501513.1| - 1.9e-11 44.2 5.6 2.2e-07 31.2 0.0 5.4 4 1 1 5 5 4 2 HAMP domain TarH PF02203.15 gi|88601335|ref|YP_501513.1| - 9.9e-10 38.6 0.0 9.9e-10 38.6 0.0 3.2 4 1 1 5 5 4 1 Tar ligand binding domain homologue DUF948 PF06103.11 gi|88601335|ref|YP_501513.1| - 3.5e-05 24.0 32.0 0.096 13.0 2.2 7.1 5 2 1 6 6 6 2 Bacterial protein of unknown function (DUF948) PilJ PF13675.6 gi|88601335|ref|YP_501513.1| - 0.0023 18.0 8.4 0.082 12.9 0.1 3.9 3 2 0 3 3 3 2 Type IV pili methyl-accepting chemotaxis transducer N-term Syntaxin_2 PF14523.6 gi|88601335|ref|YP_501513.1| - 0.014 15.8 12.6 3.7 8.0 0.0 5.2 2 1 2 5 5 5 0 Syntaxin-like protein DUF3450 PF11932.8 gi|88601335|ref|YP_501513.1| - 0.033 13.5 19.2 0.37 10.0 1.3 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3450) CHASE3 PF05227.13 gi|88601335|ref|YP_501513.1| - 0.082 12.8 17.7 0.1 12.5 0.2 3.8 3 1 0 3 3 3 0 CHASE3 domain HAMP_N3 PF18575.1 gi|88601335|ref|YP_501513.1| - 0.11 12.0 0.0 1.6 8.4 0.0 3.0 3 0 0 3 3 3 0 HAMP N-terminal domain 3 Wbp11 PF09429.10 gi|88601335|ref|YP_501513.1| - 0.14 12.6 1.5 0.4 11.1 0.6 2.4 2 0 0 2 2 1 0 WW domain binding protein 11 Sigma70_ner PF04546.13 gi|88601335|ref|YP_501513.1| - 0.16 11.8 13.6 0.21 11.4 2.7 3.0 3 0 0 3 3 3 0 Sigma-70, non-essential region ANAPC4 PF12896.7 gi|88601335|ref|YP_501513.1| - 0.23 10.9 2.4 0.88 9.0 0.1 3.0 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 TruB_N PF01509.18 gi|88601335|ref|YP_501513.1| - 0.24 11.8 1.8 2.2 8.6 0.1 2.6 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) Phage_TAC_9 PF10876.8 gi|88601335|ref|YP_501513.1| - 0.31 11.1 4.0 0.28 11.2 0.7 2.7 4 0 0 4 4 3 0 Phage tail assemb.y chaperone protein, TAC Osmo_CC PF08946.10 gi|88601335|ref|YP_501513.1| - 0.36 11.1 3.3 0.31 11.3 0.1 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil TBCC_N PF16752.5 gi|88601335|ref|YP_501513.1| - 0.41 11.1 14.6 0.12 12.9 1.9 4.4 3 2 0 3 3 3 0 Tubulin-specific chaperone C N-terminal domain VWA_2 PF13519.6 gi|88601335|ref|YP_501513.1| - 0.76 10.5 6.5 2.8 8.6 0.5 3.9 2 1 1 3 3 3 0 von Willebrand factor type A domain DUF1664 PF07889.12 gi|88601335|ref|YP_501513.1| - 3 7.9 25.0 7 6.7 0.6 6.1 4 2 1 5 5 5 0 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|88601335|ref|YP_501513.1| - 3.4 6.5 13.7 0.41 9.6 5.1 3.1 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 DASH_Dad3 PF08656.10 gi|88601335|ref|YP_501513.1| - 5.5 7.2 7.7 2.5 8.3 0.1 3.8 4 1 1 5 5 3 0 DASH complex subunit Dad3 MutS_III PF05192.18 gi|88601335|ref|YP_501513.1| - 6 7.0 15.5 6.7e+03 -2.9 15.5 3.3 1 1 0 1 1 1 0 MutS domain III Tropomyosin PF00261.20 gi|88601335|ref|YP_501513.1| - 7.3 5.9 12.0 0.68 9.2 0.1 3.3 2 1 1 3 3 3 0 Tropomyosin BORCS7 PF16088.5 gi|88601335|ref|YP_501513.1| - 8.4 6.7 19.1 1.3 9.3 3.7 3.9 2 1 1 3 3 3 0 BLOC-1-related complex sub-unit 7 zf-C4H2 PF10146.9 gi|88601335|ref|YP_501513.1| - 8.8 6.6 12.3 0.22 11.8 1.4 3.2 2 1 1 3 3 3 0 Zinc finger-containing protein Mce4_CUP1 PF11887.8 gi|88601335|ref|YP_501513.1| - 9.8 5.5 9.0 3.7 6.9 0.0 3.4 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative MCPsignal PF00015.21 gi|88601336|ref|YP_501514.1| - 2e-43 148.2 41.3 3.6e-41 140.8 20.6 4.6 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|88601336|ref|YP_501514.1| - 3.1e-13 49.9 8.2 3.7 8.0 0.0 11.7 9 6 6 15 15 14 1 HAMP domain PAS_9 PF13426.7 gi|88601336|ref|YP_501514.1| - 2.1e-07 31.2 0.0 7.9e-07 29.3 0.0 2.1 2 0 0 2 2 1 1 PAS domain DASH_Duo1 PF08651.10 gi|88601336|ref|YP_501514.1| - 1.7e-06 27.7 5.7 15 5.5 0.2 9.6 10 0 0 10 10 10 0 DASH complex subunit Duo1 PAS_4 PF08448.10 gi|88601336|ref|YP_501514.1| - 1.7e-05 25.0 0.0 7.9e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 PAS fold DUF948 PF06103.11 gi|88601336|ref|YP_501514.1| - 0.00044 20.4 38.5 0.0088 16.3 1.0 10.3 6 6 3 9 9 9 1 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|88601336|ref|YP_501514.1| - 0.0011 19.0 24.0 0.036 14.1 1.8 8.0 8 1 1 9 9 9 1 Protein of unknown function (DUF1664) ApoC-I PF04691.12 gi|88601336|ref|YP_501514.1| - 0.0038 17.1 0.0 36 4.4 0.3 6.3 8 0 0 8 8 7 0 Apolipoprotein C-I (ApoC-1) Laminin_I PF06008.14 gi|88601336|ref|YP_501514.1| - 0.0046 16.7 4.0 0.0046 16.7 4.0 4.3 1 1 3 4 4 4 1 Laminin Domain I REF PF05755.12 gi|88601336|ref|YP_501514.1| - 0.0077 16.1 9.3 11 5.8 0.0 6.6 6 1 0 6 6 6 0 Rubber elongation factor protein (REF) PAS PF00989.25 gi|88601336|ref|YP_501514.1| - 0.021 14.8 0.0 0.2 11.7 0.0 2.4 2 0 0 2 2 2 0 PAS fold MRP-S28 PF10213.9 gi|88601336|ref|YP_501514.1| - 0.069 13.6 5.0 3.3e+02 1.7 0.0 5.9 7 0 0 7 7 6 0 Mitochondrial ribosomal subunit protein BLYB PF05289.11 gi|88601336|ref|YP_501514.1| - 0.12 12.6 20.0 88 3.3 0.0 7.8 8 0 0 8 8 7 0 Borrelia hemolysin accessory protein F_actin_bind PF08919.10 gi|88601336|ref|YP_501514.1| - 0.12 12.5 3.5 6.3 6.9 0.0 5.0 1 1 1 4 4 4 0 F-actin binding Syntaxin_2 PF14523.6 gi|88601336|ref|YP_501514.1| - 0.15 12.5 16.3 20 5.6 0.1 7.4 7 2 3 10 10 8 0 Syntaxin-like protein HisKA PF00512.25 gi|88601336|ref|YP_501514.1| - 0.3 11.2 8.7 24 5.0 0.0 5.6 5 1 0 5 5 4 0 His Kinase A (phospho-acceptor) domain DUF3235 PF11574.8 gi|88601336|ref|YP_501514.1| - 0.34 11.8 18.1 1.7e+02 3.2 0.0 8.1 8 1 1 9 9 8 0 Protein of unknown function (DUF3235) Mis14 PF08641.12 gi|88601336|ref|YP_501514.1| - 0.44 10.8 10.7 1.9e+02 2.3 1.5 7.2 8 1 0 9 9 9 0 Kinetochore protein Mis14 like WXG100 PF06013.12 gi|88601336|ref|YP_501514.1| - 0.71 10.2 18.8 7.9 6.8 5.0 7.7 8 2 1 9 9 9 0 Proteins of 100 residues with WXG Mce4_CUP1 PF11887.8 gi|88601336|ref|YP_501514.1| - 0.82 9.1 5.8 1.9 7.9 1.3 2.9 3 1 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Syntaxin-6_N PF09177.11 gi|88601336|ref|YP_501514.1| - 1.1 9.9 13.8 18 6.0 0.4 5.3 2 2 2 4 4 4 0 Syntaxin 6, N-terminal ATG16 PF08614.11 gi|88601336|ref|YP_501514.1| - 1.1 9.5 11.5 3.5 7.8 3.1 2.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Lipase3_N PF03893.16 gi|88601336|ref|YP_501514.1| - 1.3 9.1 6.0 58 3.8 0.0 4.5 5 0 0 5 5 5 0 Lipase 3 N-terminal region RAC_head PF16717.5 gi|88601336|ref|YP_501514.1| - 1.5 9.8 10.6 0.42 11.6 0.4 4.6 2 1 0 3 3 3 0 Ribosome-associated complex head domain Ran-binding PF05508.11 gi|88601336|ref|YP_501514.1| - 2.4 7.1 18.0 0.073 12.0 5.3 3.0 1 1 0 2 2 2 0 RanGTP-binding protein Seryl_tRNA_N PF02403.22 gi|88601336|ref|YP_501514.1| - 3.5 7.9 14.0 4.7 7.5 2.3 4.1 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|88601336|ref|YP_501514.1| - 5.8 7.3 19.2 9.7 6.6 1.3 5.4 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EspB PF05802.11 gi|88601336|ref|YP_501514.1| - 7.8 6.4 34.9 0.027 14.4 4.7 4.3 1 1 2 3 3 3 0 Enterobacterial EspB protein Peptidase_S8 PF00082.22 gi|88601337|ref|YP_501515.1| - 3.9e-48 164.2 16.2 6.7e-48 163.5 16.2 1.3 1 0 0 1 1 1 1 Subtilase family PKD PF00801.20 gi|88601337|ref|YP_501515.1| - 5.7e-08 32.5 0.3 2.3e-07 30.6 0.3 2.1 1 0 0 1 1 1 1 PKD domain Peptidase_S8_N PF16361.5 gi|88601337|ref|YP_501515.1| - 0.0011 19.5 0.0 0.002 18.6 0.0 1.4 1 0 0 1 1 1 1 N-terminal of Subtilase family Trypan_PARP PF05887.11 gi|88601337|ref|YP_501515.1| - 0.073 13.0 10.9 0.43 10.5 5.9 2.5 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) DUF2207 PF09972.9 gi|88601338|ref|YP_501516.1| - 0.046 12.5 1.3 0.049 12.4 1.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2839 PF10999.8 gi|88601338|ref|YP_501516.1| - 2 8.9 7.0 3.5 8.1 7.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2839) F420_ligase PF01996.16 gi|88601339|ref|YP_501517.1| - 1.6e-59 201.2 0.1 1.8e-59 201.0 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Nucleoporin_C PF03177.14 gi|88601339|ref|YP_501517.1| - 0.022 13.5 0.0 0.026 13.3 0.0 1.1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal Pterin_bind PF00809.22 gi|88601340|ref|YP_501518.1| - 2.6e-52 177.9 0.0 3.2e-52 177.7 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.19 gi|88601341|ref|YP_501519.1| - 2.5e-69 231.7 3.7 3.4e-69 231.2 3.7 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|88601341|ref|YP_501519.1| - 3e-36 124.2 0.0 5e-36 123.5 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OCD_Mu_crystall PF02423.15 gi|88601341|ref|YP_501519.1| - 0.0093 14.9 0.4 0.013 14.5 0.4 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family AdoHcyase_NAD PF00670.21 gi|88601341|ref|YP_501519.1| - 0.011 15.9 1.0 0.45 10.6 1.0 2.2 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.25 gi|88601341|ref|YP_501519.1| - 0.012 15.1 0.4 0.018 14.5 0.4 1.3 1 0 0 1 1 1 0 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|88601341|ref|YP_501519.1| - 0.017 14.4 1.1 0.026 13.8 1.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF460 PF04312.13 gi|88601341|ref|YP_501519.1| - 0.15 11.7 1.8 0.24 11.1 0.8 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF460) SHMT PF00464.19 gi|88601342|ref|YP_501520.1| - 6.8e-164 545.2 0.1 8.2e-164 544.9 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|88601342|ref|YP_501520.1| - 0.072 12.4 0.0 0.36 10.1 0.0 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase mCpol PF18182.1 gi|88601342|ref|YP_501520.1| - 0.076 13.3 0.0 0.23 11.8 0.0 1.8 1 0 0 1 1 1 0 minimal CRISPR polymerase domain Met_gamma_lyase PF06838.11 gi|88601342|ref|YP_501520.1| - 0.11 11.0 0.0 0.18 10.3 0.0 1.3 1 0 0 1 1 1 0 Methionine gamma-lyase XhlA PF10779.9 gi|88601343|ref|YP_501521.1| - 0.023 14.9 0.1 0.035 14.3 0.1 1.3 1 0 0 1 1 1 0 Haemolysin XhlA PLRV_ORF5 PF01690.17 gi|88601343|ref|YP_501521.1| - 0.033 12.9 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Angiomotin_C PF12240.8 gi|88601343|ref|YP_501521.1| - 0.066 12.8 0.6 0.084 12.4 0.1 1.4 2 0 0 2 2 2 0 Angiomotin C terminal SMC_N PF02463.19 gi|88601344|ref|YP_501522.1| - 1.3e-61 207.9 0.0 2e-61 207.2 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|88601344|ref|YP_501522.1| - 1e-28 100.0 0.0 6e-28 97.5 0.0 2.4 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|88601344|ref|YP_501522.1| - 1.9e-13 50.9 0.9 1.9e-13 50.9 0.9 3.7 2 2 1 3 3 3 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601344|ref|YP_501522.1| - 1.6e-11 45.1 30.3 1.6e-11 45.1 30.3 6.6 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.6 gi|88601344|ref|YP_501522.1| - 1.2e-07 31.9 15.1 6.5e-06 26.2 0.3 3.8 4 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601344|ref|YP_501522.1| - 3.8e-07 29.8 0.0 7.9e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Fez1 PF06818.15 gi|88601344|ref|YP_501522.1| - 0.0066 16.9 22.0 0.0066 16.9 22.0 6.2 2 2 4 6 6 5 1 Fez1 Laminin_II PF06009.12 gi|88601344|ref|YP_501522.1| - 0.011 15.7 3.5 0.011 15.7 3.5 7.2 4 2 2 7 7 7 0 Laminin Domain II Baculo_PEP_C PF04513.12 gi|88601344|ref|YP_501522.1| - 0.074 13.1 27.7 0.19 11.8 0.6 6.5 7 1 1 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF19 PF01579.18 gi|88601344|ref|YP_501522.1| - 0.076 12.8 1.9 0.29 10.9 1.9 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF19) NPV_P10 PF05531.12 gi|88601344|ref|YP_501522.1| - 0.11 13.0 31.0 1.2 9.7 0.1 9.7 8 2 1 10 10 10 0 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.27 gi|88601344|ref|YP_501522.1| - 4.1 7.9 23.2 0.097 13.2 0.3 5.4 2 2 1 3 3 3 0 ABC transporter SMC_ScpA PF02616.14 gi|88601345|ref|YP_501523.1| - 2.2e-14 54.0 0.6 1.7e-13 51.1 0.6 2.0 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|88601345|ref|YP_501523.1| - 0.01 15.1 0.0 0.02 14.2 0.0 1.5 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein Gln-synt_N_2 PF16952.5 gi|88601345|ref|YP_501523.1| - 0.029 14.2 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain DUF4164 PF13747.6 gi|88601345|ref|YP_501523.1| - 0.042 14.1 0.3 0.082 13.2 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) CarboxypepD_reg PF13620.6 gi|88601346|ref|YP_501524.1| - 1.6e-07 31.5 0.0 0.018 15.3 0.0 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|88601346|ref|YP_501524.1| - 7.2e-05 22.9 0.3 0.0006 20.0 0.0 2.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF5060 PF16586.5 gi|88601346|ref|YP_501524.1| - 0.012 16.0 0.1 0.055 13.9 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5060) BPD_transp_1 PF00528.22 gi|88601347|ref|YP_501525.1| - 5.2e-19 68.7 11.7 5.2e-19 68.7 11.7 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|88601348|ref|YP_501526.1| - 6.3e-36 123.9 0.0 8.2e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601348|ref|YP_501526.1| - 1.9e-11 44.3 0.0 2.1e-05 24.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601348|ref|YP_501526.1| - 2.2e-05 24.1 0.0 4.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|88601348|ref|YP_501526.1| - 6.7e-05 22.4 0.1 0.0023 17.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|88601348|ref|YP_501526.1| - 9.7e-05 22.2 0.0 0.0083 15.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601348|ref|YP_501526.1| - 9.9e-05 22.9 0.0 0.00014 22.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|88601348|ref|YP_501526.1| - 0.00027 20.9 0.1 0.00073 19.5 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|88601348|ref|YP_501526.1| - 0.00029 21.3 0.0 0.00048 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|88601348|ref|YP_501526.1| - 0.0068 16.8 0.1 0.053 14.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|88601348|ref|YP_501526.1| - 0.013 15.2 0.0 0.034 13.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|88601348|ref|YP_501526.1| - 0.014 15.6 0.2 0.21 11.9 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|88601348|ref|YP_501526.1| - 0.022 15.0 0.0 0.044 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|88601348|ref|YP_501526.1| - 0.023 13.5 0.5 3.1 6.5 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|88601348|ref|YP_501526.1| - 0.024 14.9 0.2 0.054 13.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|88601348|ref|YP_501526.1| - 0.026 14.5 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|88601348|ref|YP_501526.1| - 0.031 13.7 0.0 0.091 12.1 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|88601348|ref|YP_501526.1| - 0.065 13.4 0.1 0.086 13.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88601348|ref|YP_501526.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88601348|ref|YP_501526.1| - 0.091 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|88601348|ref|YP_501526.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|88601348|ref|YP_501526.1| - 0.13 12.9 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|88601348|ref|YP_501526.1| - 0.13 12.1 0.0 0.36 10.7 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|88601348|ref|YP_501526.1| - 0.16 11.5 0.2 0.68 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|88601349|ref|YP_501527.1| - 6e-18 65.2 12.3 6e-18 65.2 12.3 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|88601350|ref|YP_501528.1| - 4.3e-61 206.2 0.2 4.9e-61 206.0 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|88601350|ref|YP_501528.1| - 1.6e-10 41.2 0.0 2.5e-09 37.4 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site SBP_bac_3 PF00497.20 gi|88601351|ref|YP_501529.1| - 1.4e-59 201.3 0.1 1.6e-59 201.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|88601351|ref|YP_501529.1| - 2.6e-11 43.7 0.0 8.7e-10 38.8 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 gi|88601351|ref|YP_501529.1| - 0.0025 17.4 0.0 0.005 16.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein EamA PF00892.20 gi|88601352|ref|YP_501530.1| - 3.6e-28 98.4 34.0 1.8e-16 60.6 9.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|88601352|ref|YP_501530.1| - 0.46 9.8 8.9 0.062 12.6 1.7 2.6 2 1 1 3 3 3 0 Triose-phosphate Transporter family SLC35F PF06027.12 gi|88601352|ref|YP_501530.1| - 1.3 8.5 6.0 2.8 7.3 6.0 1.6 1 0 0 1 1 1 0 Solute carrier family 35 PAD_porph PF04371.15 gi|88601353|ref|YP_501531.1| - 1e-114 383.1 0.0 1.6e-114 382.5 0.0 1.3 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.22 gi|88601353|ref|YP_501531.1| - 5.2e-50 170.2 0.0 7.4e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase MscL PF01741.18 gi|88601354|ref|YP_501532.1| - 2.2e-19 69.9 5.7 2.5e-19 69.8 5.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL TPR_14 PF13428.6 gi|88601355|ref|YP_501533.1| - 1.4e-06 28.6 0.2 0.014 16.1 0.0 3.3 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88601355|ref|YP_501533.1| - 0.00011 22.6 0.0 0.33 11.5 0.0 2.9 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88601355|ref|YP_501533.1| - 0.012 16.2 1.8 5.7 7.9 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 gi|88601355|ref|YP_501533.1| - 0.092 13.0 0.2 1.5 9.2 0.0 2.7 3 0 0 3 3 3 0 PPR repeat NIF3 PF01784.18 gi|88601356|ref|YP_501534.1| - 8.8e-44 150.0 0.0 1.2e-43 149.5 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) SWIM PF04434.17 gi|88601357|ref|YP_501535.1| - 1e-08 34.7 0.7 1.4e-08 34.2 0.7 1.3 1 0 0 1 1 1 1 SWIM zinc finger tRNA-synt_2c PF01411.19 gi|88601358|ref|YP_501536.1| - 1.8e-121 406.3 0.0 2.5e-121 405.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|88601358|ref|YP_501536.1| - 4.2e-19 69.3 0.5 9.3e-19 68.2 0.5 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|88601358|ref|YP_501536.1| - 3.8e-10 39.7 1.6 8.5e-10 38.6 1.6 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain CorA PF01544.18 gi|88601358|ref|YP_501536.1| - 0.26 10.6 1.6 1.3 8.3 0.1 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein HTH_20 PF12840.7 gi|88601359|ref|YP_501537.1| - 1.8e-09 37.5 0.1 3.3e-09 36.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88601359|ref|YP_501537.1| - 1.7e-06 27.8 0.1 2.9e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|88601359|ref|YP_501537.1| - 0.00052 19.8 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|88601359|ref|YP_501537.1| - 0.00082 19.2 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 gi|88601359|ref|YP_501537.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_24 PF13412.6 gi|88601359|ref|YP_501537.1| - 0.02 14.4 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2513 PF10711.9 gi|88601359|ref|YP_501537.1| - 0.028 14.7 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|88601359|ref|YP_501537.1| - 0.046 14.2 0.1 0.074 13.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.11 gi|88601359|ref|YP_501537.1| - 0.064 13.1 1.2 0.085 12.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Fe_dep_repress PF01325.19 gi|88601359|ref|YP_501537.1| - 0.067 13.4 0.2 0.16 12.2 0.2 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|88601359|ref|YP_501537.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Gmad2 PF10648.9 gi|88601360|ref|YP_501538.1| - 0.012 15.8 0.3 0.42 10.9 0.0 2.6 2 1 0 2 2 2 0 Immunoglobulin-like domain of bacterial spore germination CYSTM PF12734.7 gi|88601360|ref|YP_501538.1| - 1.1 9.7 2.3 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich TM module stress tolerance Colicin_V PF02674.16 gi|88601362|ref|YP_501540.1| - 0.05 13.6 2.0 0.14 12.2 2.0 1.7 1 1 0 1 1 1 0 Colicin V production protein Methyltransf_18 PF12847.7 gi|88601362|ref|YP_501540.1| - 0.17 11.8 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ferritin PF00210.24 gi|88601363|ref|YP_501541.1| - 8.9e-45 152.1 4.5 1e-44 151.9 4.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF5620 PF18522.1 gi|88601363|ref|YP_501541.1| - 0.13 12.7 0.1 0.15 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5620) Glu_synthase PF01645.17 gi|88601364|ref|YP_501542.1| - 2.3e-13 50.1 0.0 1.2e-10 41.1 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase NMO PF03060.15 gi|88601364|ref|YP_501542.1| - 0.17 11.2 0.1 0.32 10.3 0.1 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase AAA_35 PF14516.6 gi|88601366|ref|YP_501544.1| - 6.2e-05 22.0 0.1 0.00043 19.2 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain PDDEXK_9 PF08011.11 gi|88601366|ref|YP_501544.1| - 0.00013 21.8 0.0 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF4167 PF13763.6 gi|88601367|ref|YP_501545.1| - 0.027 14.6 0.1 3.9 7.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4167) RNA_pol_Rpb5_C PF01191.19 gi|88601368|ref|YP_501546.1| - 5.4e-29 99.9 0.2 6.1e-29 99.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|88601369|ref|YP_501547.1| - 4.5e-51 173.3 0.1 5.5e-51 173.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|88601369|ref|YP_501547.1| - 1.4e-26 92.5 0.0 3.6e-26 91.1 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|88601369|ref|YP_501547.1| - 1.3e-17 64.0 1.1 4.6e-17 62.3 1.1 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|88601370|ref|YP_501548.1| - 5.4e-127 424.1 0.0 6.8e-127 423.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|88601370|ref|YP_501548.1| - 1.4e-30 105.5 0.5 2.4e-30 104.7 0.5 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|88601370|ref|YP_501548.1| - 5.5e-19 68.2 0.2 1.1e-18 67.3 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|88601370|ref|YP_501548.1| - 3.2e-08 34.0 2.8 1.1e-07 32.3 2.8 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DNA_RNApol_7kD PF03604.13 gi|88601370|ref|YP_501548.1| - 0.019 14.7 1.7 0.038 13.7 1.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.12 gi|88601370|ref|YP_501548.1| - 0.019 15.1 1.2 0.036 14.2 1.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|88601370|ref|YP_501548.1| - 0.025 14.1 0.4 4.5 6.9 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|88601370|ref|YP_501548.1| - 0.077 13.0 0.9 0.14 12.2 0.9 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain RNA_pol_Rpb1_1 PF04997.12 gi|88601371|ref|YP_501549.1| - 4.3e-100 335.1 0.0 6e-100 334.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|88601371|ref|YP_501549.1| - 5.9e-63 212.0 0.0 9.6e-63 211.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|88601371|ref|YP_501549.1| - 5.3e-33 114.2 0.0 9.4e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|88601371|ref|YP_501549.1| - 2.8e-32 110.9 0.0 5.3e-32 110.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|88601371|ref|YP_501549.1| - 1e-27 97.2 0.0 1.7e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|88601371|ref|YP_501549.1| - 1.2 9.3 7.5 6.4 7.1 0.4 3.8 3 0 0 3 3 3 0 C4-type zinc ribbon domain Fer4_6 PF12837.7 gi|88601371|ref|YP_501549.1| - 2.9 8.1 7.5 0.82 9.9 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain RNA_pol_Rpb1_5 PF04998.17 gi|88601372|ref|YP_501550.1| - 3.1e-55 187.5 1.8 4.9e-55 186.8 1.8 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|88601373|ref|YP_501551.1| - 3e-16 58.9 0.0 4.6e-16 58.3 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|88601374|ref|YP_501552.1| - 8.9e-17 60.7 1.3 4.9e-11 42.3 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|88601374|ref|YP_501552.1| - 1.3e-16 60.4 0.1 1.4e-15 57.1 0.0 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|88601374|ref|YP_501552.1| - 5.2e-06 26.2 0.4 0.065 13.1 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|88601374|ref|YP_501552.1| - 4.8e-05 23.1 1.6 0.014 15.2 0.1 2.5 2 1 0 2 2 2 2 KH domain DUF473 PF04322.12 gi|88601376|ref|YP_501554.1| - 7e-41 138.8 1.6 8e-41 138.6 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|88601377|ref|YP_501555.1| - 1.6e-44 152.5 0.1 1.8e-44 152.3 0.1 1.0 1 0 0 1 1 1 1 PAC2 family UTP15_C PF09384.10 gi|88601377|ref|YP_501555.1| - 0.14 11.8 0.1 1.9 8.1 0.0 2.0 2 0 0 2 2 2 0 UTP15 C terminal Inhibitor_I42 PF09394.10 gi|88601378|ref|YP_501556.1| - 7.4e-10 39.1 0.1 1.3e-09 38.4 0.1 1.4 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 SpoIIE PF07228.12 gi|88601379|ref|YP_501557.1| - 2.2e-51 174.5 0.1 3.7e-51 173.8 0.1 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|88601379|ref|YP_501557.1| - 3.1e-22 79.6 0.0 6.6e-22 78.5 0.0 1.6 1 1 0 1 1 1 1 Cache domain HAMP PF00672.25 gi|88601379|ref|YP_501557.1| - 1e-11 45.0 0.0 2.3e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|88601379|ref|YP_501557.1| - 0.00098 18.5 0.0 0.0025 17.2 0.0 1.6 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain PepSY_TM PF03929.16 gi|88601379|ref|YP_501557.1| - 0.077 12.7 0.1 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 PepSY-associated TM region CENP-F_leu_zip PF10473.9 gi|88601379|ref|YP_501557.1| - 0.26 11.3 0.6 0.46 10.5 0.0 1.6 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lactamase_B PF00753.27 gi|88601380|ref|YP_501558.1| - 0.00015 21.9 0.2 0.00035 20.7 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88601380|ref|YP_501558.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain STAS PF01740.21 gi|88601381|ref|YP_501559.1| - 2.9e-18 65.6 0.0 3.3e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|88601381|ref|YP_501559.1| - 1.3e-08 35.0 0.0 1.6e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 STAS domain LppX_LprAFG PF07161.13 gi|88601381|ref|YP_501559.1| - 0.11 12.4 0.2 0.15 11.9 0.2 1.4 1 1 0 1 1 1 0 LppX_LprAFG lipoprotein HATPase_c_2 PF13581.6 gi|88601382|ref|YP_501560.1| - 6.8e-27 93.9 0.0 7.6e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Methyltransf_31 PF13847.6 gi|88601383|ref|YP_501561.1| - 2.2e-17 63.2 0.0 3.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601383|ref|YP_501561.1| - 3.5e-17 63.0 0.0 5.3e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601383|ref|YP_501561.1| - 1.3e-16 61.0 0.0 2.5e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601383|ref|YP_501561.1| - 2.2e-16 60.3 0.0 3.6e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601383|ref|YP_501561.1| - 1.9e-12 47.3 0.0 2.6e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601383|ref|YP_501561.1| - 3.9e-10 39.5 0.0 5.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|88601383|ref|YP_501561.1| - 7.8e-07 28.7 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|88601383|ref|YP_501561.1| - 6.6e-06 26.0 0.0 8.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|88601383|ref|YP_501561.1| - 1.8e-05 24.4 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|88601383|ref|YP_501561.1| - 0.00058 19.2 0.0 0.00078 18.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain GCD14 PF08704.10 gi|88601383|ref|YP_501561.1| - 0.00062 19.5 0.0 0.0009 19.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|88601383|ref|YP_501561.1| - 0.00077 18.8 0.0 0.00099 18.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|88601383|ref|YP_501561.1| - 0.0054 16.4 0.0 0.0076 15.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|88601383|ref|YP_501561.1| - 0.0091 15.9 0.0 0.21 11.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|88601383|ref|YP_501561.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|88601383|ref|YP_501561.1| - 0.025 14.2 0.0 0.047 13.4 0.0 1.5 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_33 PF10017.9 gi|88601383|ref|YP_501561.1| - 0.029 13.5 0.0 0.036 13.2 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent DUF938 PF06080.12 gi|88601383|ref|YP_501561.1| - 0.066 13.0 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Inhibitor_I42 PF09394.10 gi|88601384|ref|YP_501562.1| - 1.7e-07 31.6 0.1 2.6e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF1857 PF08982.11 gi|88601384|ref|YP_501562.1| - 0.033 14.0 1.8 0.046 13.6 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1857) Inhibitor_I42 PF09394.10 gi|88601385|ref|YP_501563.1| - 1.6e-24 86.1 0.4 1.6e-24 86.1 0.4 1.4 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 Ribosomal_S13_N PF08069.12 gi|88601386|ref|YP_501564.1| - 0.013 15.5 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain AAA-ATPase_like PF09820.9 gi|88601387|ref|YP_501565.1| - 1.1e-102 343.2 0.0 2.2e-102 342.3 0.0 1.4 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601387|ref|YP_501565.1| - 1.4e-32 111.7 0.0 2.1e-32 111.1 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2150 PF09920.9 gi|88601388|ref|YP_501566.1| - 9e-58 195.4 5.3 1e-57 195.1 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) LD_cluster3 PF18180.1 gi|88601388|ref|YP_501566.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster3 family ThiI PF02568.14 gi|88601389|ref|YP_501567.1| - 7.2e-55 185.6 0.0 9.3e-55 185.3 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|88601389|ref|YP_501567.1| - 6.4e-16 58.7 0.0 1.7e-15 57.4 0.0 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|88601389|ref|YP_501567.1| - 2.9e-05 23.7 0.0 0.3 10.5 0.0 2.9 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC PHD20L1_u1 PF16660.5 gi|88601389|ref|YP_501567.1| - 0.21 12.4 0.0 0.37 11.5 0.0 1.3 1 0 0 1 1 1 0 PHD finger protein 20-like protein 1 SepSecS PF05889.13 gi|88601390|ref|YP_501568.1| - 2.1e-20 72.8 0.0 3.1e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|88601390|ref|YP_501568.1| - 5.5e-18 65.1 0.0 7.7e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|88601390|ref|YP_501568.1| - 0.00087 18.7 0.2 0.0011 18.4 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DDE_Tnp_1_6 PF13751.6 gi|88601391|ref|YP_501569.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601391|ref|YP_501569.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601391|ref|YP_501569.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601391|ref|YP_501569.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain Carb_bind PF10645.9 gi|88601392|ref|YP_501570.1| - 1.9e-14 53.6 88.5 0.0073 16.5 13.1 7.5 3 3 4 7 7 7 7 Carbohydrate binding IGFL PF14653.6 gi|88601392|ref|YP_501570.1| - 6.9e-08 32.3 74.9 0.011 15.6 7.2 6.5 1 1 6 8 8 8 6 Insulin growth factor-like family AlphaC_C PF17480.2 gi|88601392|ref|YP_501570.1| - 0.0034 17.4 0.0 0.78 9.8 0.0 3.5 4 0 0 4 4 4 1 AlphaC C-terminal Actino_peptide PF14408.6 gi|88601392|ref|YP_501570.1| - 2.4 8.3 13.1 4.2 7.6 0.3 4.9 4 1 1 5 5 5 0 Ribosomally synthesised peptide in actinomycetes DUF87 PF01935.17 gi|88601393|ref|YP_501571.1| - 5.2e-36 124.8 0.0 7.1e-36 124.4 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|88601393|ref|YP_501571.1| - 0.0036 16.3 0.0 0.016 14.1 0.0 2.0 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|88601393|ref|YP_501571.1| - 0.028 13.0 0.1 0.44 9.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Form_Nir_trans PF01226.17 gi|88601394|ref|YP_501572.1| - 4e-61 206.4 23.2 4.5e-61 206.2 23.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter DUF2070 PF09843.9 gi|88601395|ref|YP_501573.1| - 1.6e-192 640.7 0.0 1.8e-192 640.6 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) PfkB PF00294.24 gi|88601396|ref|YP_501574.1| - 1e-48 166.2 0.0 1.3e-48 165.8 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF555 PF04475.12 gi|88601397|ref|YP_501575.1| - 3.9e-46 155.5 0.1 4.4e-46 155.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.12 gi|88601397|ref|YP_501575.1| - 0.039 14.2 0.6 0.18 12.0 0.2 2.0 2 0 0 2 2 2 0 Dodecin Nitroreductase PF00881.24 gi|88601398|ref|YP_501576.1| - 6e-30 104.5 0.1 5.5e-15 55.8 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|88601398|ref|YP_501576.1| - 6.6e-06 25.9 0.0 0.087 12.4 0.0 2.9 1 1 2 3 3 3 3 Putative TM nitroreductase ABC1 PF03109.16 gi|88601399|ref|YP_501577.1| - 0.096 12.9 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 ABC1 family DUF5350 PF17299.2 gi|88601400|ref|YP_501578.1| - 1.1e-25 89.8 8.6 2.6e-25 88.7 8.6 1.6 1 0 0 1 1 1 1 Family of unknown function (DUF5350) GatB_N PF02934.15 gi|88601401|ref|YP_501579.1| - 4.5e-63 213.2 0.2 6.1e-63 212.8 0.2 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|88601401|ref|YP_501579.1| - 7.2e-17 61.7 0.9 1.5e-16 60.6 0.4 1.8 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|88601401|ref|YP_501579.1| - 6.4e-16 58.4 0.0 5.6e-15 55.3 0.0 2.4 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|88601401|ref|YP_501579.1| - 1.8e-05 24.9 1.7 3.7e-05 23.8 0.3 2.3 3 0 0 3 3 3 1 Yqey-like protein Orthopox_35kD PF02250.15 gi|88601401|ref|YP_501579.1| - 0.037 13.7 0.2 0.094 12.4 0.2 1.6 1 0 0 1 1 1 0 35kD major secreted virus protein Asparaginase PF00710.20 gi|88601402|ref|YP_501580.1| - 2.2e-57 193.7 1.8 5.3e-57 192.5 1.8 1.6 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|88601402|ref|YP_501580.1| - 6.7e-26 90.8 0.1 2.2e-25 89.1 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|88601402|ref|YP_501580.1| - 3.7e-07 29.3 0.0 7.4e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 GatD N-terminal domain Lyase_1 PF00206.20 gi|88601403|ref|YP_501581.1| - 2.4e-49 168.4 0.0 3.5e-49 167.9 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|88601403|ref|YP_501581.1| - 3e-13 50.3 0.0 9.3e-13 48.7 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Peptidase_M32 PF02074.15 gi|88601403|ref|YP_501581.1| - 0.07 11.9 0.0 0.32 9.7 0.0 1.9 2 0 0 2 2 2 0 Carboxypeptidase Taq (M32) metallopeptidase NMT1_2 PF13379.6 gi|88601404|ref|YP_501582.1| - 2.8e-33 115.7 1.8 4.2e-33 115.1 1.8 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|88601404|ref|YP_501582.1| - 4.3e-21 75.9 0.2 5.6e-21 75.5 0.2 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|88601404|ref|YP_501582.1| - 5.8e-09 35.9 0.0 8.3e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|88601404|ref|YP_501582.1| - 3.7e-05 23.3 0.1 0.00011 21.8 0.1 1.6 1 1 0 1 1 1 1 NMT1-like family ScsC_N PF18312.1 gi|88601404|ref|YP_501582.1| - 0.0039 17.0 0.2 1.7 8.5 0.4 2.6 2 0 0 2 2 2 2 Copper resistance protein ScsC N-terminal domain SBP_bac_3 PF00497.20 gi|88601404|ref|YP_501582.1| - 0.0065 15.9 0.0 0.013 14.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 BPD_transp_1 PF00528.22 gi|88601405|ref|YP_501583.1| - 1.7e-19 70.3 14.1 1.7e-19 70.3 14.1 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 gi|88601405|ref|YP_501583.1| - 0.06 13.3 0.5 0.06 13.3 0.5 2.5 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex DUF3341 PF11821.8 gi|88601405|ref|YP_501583.1| - 3 7.5 7.7 10 5.7 3.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3341) ABC_tran PF00005.27 gi|88601406|ref|YP_501584.1| - 4.6e-31 108.2 0.0 6.5e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601406|ref|YP_501584.1| - 1.4e-06 28.3 0.0 0.0028 17.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|88601406|ref|YP_501584.1| - 4.6e-05 23.8 0.1 0.00074 19.9 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|88601406|ref|YP_501584.1| - 0.00038 20.4 0.0 0.00064 19.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|88601406|ref|YP_501584.1| - 0.002 17.9 0.0 0.074 12.8 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|88601406|ref|YP_501584.1| - 0.0095 16.3 0.1 0.014 15.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|88601406|ref|YP_501584.1| - 0.01 15.8 0.0 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|88601406|ref|YP_501584.1| - 0.011 15.6 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|88601406|ref|YP_501584.1| - 0.016 15.5 0.0 0.029 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|88601406|ref|YP_501584.1| - 0.017 15.6 0.0 0.036 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88601406|ref|YP_501584.1| - 0.027 14.2 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|88601406|ref|YP_501584.1| - 0.03 14.2 0.0 0.061 13.3 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|88601406|ref|YP_501584.1| - 0.035 13.5 0.0 2 7.8 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 gi|88601406|ref|YP_501584.1| - 0.035 13.3 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|88601406|ref|YP_501584.1| - 0.035 14.0 0.3 2.7 7.9 0.2 2.2 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|88601406|ref|YP_501584.1| - 0.04 14.1 0.0 0.091 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|88601406|ref|YP_501584.1| - 0.054 13.7 0.1 0.12 12.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88601406|ref|YP_501584.1| - 0.062 13.5 0.6 0.24 11.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|88601406|ref|YP_501584.1| - 0.065 13.0 0.1 0.2 11.4 0.0 1.8 1 1 1 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|88601406|ref|YP_501584.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_L16 PF00252.18 gi|88601407|ref|YP_501585.1| - 3.9e-33 114.2 0.2 4.5e-33 114.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Fumerase PF05681.14 gi|88601408|ref|YP_501586.1| - 8.8e-89 297.5 0.2 1e-88 297.3 0.2 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|88601409|ref|YP_501587.1| - 3.9e-35 121.0 0.1 5.2e-35 120.6 0.1 1.1 1 0 0 1 1 1 1 Fumarase C-terminus Fer4 PF00037.27 gi|88601410|ref|YP_501588.1| - 1.4e-10 40.5 13.6 3.6e-07 29.7 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88601410|ref|YP_501588.1| - 5.2e-10 39.8 7.3 4.1e-06 27.3 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88601410|ref|YP_501588.1| - 1.2e-09 37.8 16.4 4.7e-07 29.6 1.1 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88601410|ref|YP_501588.1| - 1.8e-07 30.8 11.9 1.1e-05 25.2 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88601410|ref|YP_501588.1| - 2.3e-07 30.8 9.2 5.8e-07 29.5 9.5 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88601410|ref|YP_501588.1| - 1.2e-06 28.6 8.6 5.3e-05 23.3 1.1 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88601410|ref|YP_501588.1| - 4.3e-06 27.6 8.7 0.0031 18.4 0.5 2.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88601410|ref|YP_501588.1| - 1.6e-05 25.0 9.6 0.00013 22.0 9.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88601410|ref|YP_501588.1| - 0.001 19.4 16.1 0.018 15.5 2.7 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88601410|ref|YP_501588.1| - 0.0053 17.3 8.5 0.016 15.7 1.7 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88601410|ref|YP_501588.1| - 0.008 16.9 4.8 0.017 15.9 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|88601410|ref|YP_501588.1| - 0.058 14.2 5.3 0.28 12.1 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88601410|ref|YP_501588.1| - 0.089 13.8 4.1 0.089 13.8 4.1 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88601410|ref|YP_501588.1| - 0.089 13.3 0.7 0.089 13.3 0.7 2.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|88601410|ref|YP_501588.1| - 4.3 7.8 14.4 0.49 10.9 3.8 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|88601411|ref|YP_501589.1| - 1.3e-74 250.9 1.0 1.6e-74 250.5 1.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|88601411|ref|YP_501589.1| - 2.2e-19 69.7 0.0 4.3e-19 68.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|88601411|ref|YP_501589.1| - 2.6e-05 23.9 0.5 6.6e-05 22.6 0.5 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|88601412|ref|YP_501590.1| - 3.5e-39 134.0 0.2 5.8e-39 133.3 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|88601413|ref|YP_501591.1| - 3.8e-22 79.2 0.0 5.2e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ATP-grasp_2 PF08442.10 gi|88601414|ref|YP_501592.1| - 1.1e-45 155.7 0.4 1.9e-45 154.9 0.4 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|88601414|ref|YP_501592.1| - 2.2e-13 50.3 2.8 2e-12 47.2 2.0 2.2 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|88601414|ref|YP_501592.1| - 8e-08 32.0 0.2 1.5e-07 31.1 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|88601414|ref|YP_501592.1| - 0.00054 19.8 0.4 0.00099 18.9 0.4 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding PF02629.19 gi|88601415|ref|YP_501593.1| - 3.4e-22 78.9 2.7 1.6e-21 76.8 0.7 2.7 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|88601415|ref|YP_501593.1| - 9.8e-14 51.4 3.1 5e-13 49.1 0.6 2.9 2 1 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|88601415|ref|YP_501593.1| - 5.1e-11 42.5 0.1 1.4e-10 41.1 0.0 1.8 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|88601415|ref|YP_501593.1| - 1e-07 32.5 0.2 5.5e-07 30.1 0.2 2.0 1 1 1 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|88601415|ref|YP_501593.1| - 0.095 13.5 0.3 0.21 12.4 0.3 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DZR PF12773.7 gi|88601416|ref|YP_501594.1| - 0.0021 18.0 0.6 0.0039 17.2 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|88601416|ref|YP_501594.1| - 0.025 15.3 0.1 0.042 14.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|88601416|ref|YP_501594.1| - 0.037 13.8 5.4 1.8 8.4 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|88601416|ref|YP_501594.1| - 0.043 13.2 1.5 0.08 12.4 1.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|88601416|ref|YP_501594.1| - 0.16 11.8 3.1 0.35 10.8 3.1 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1624 PF07786.12 gi|88601417|ref|YP_501595.1| - 2.4e-63 213.7 9.7 2.8e-63 213.5 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|88601417|ref|YP_501595.1| - 0.044 12.8 30.1 1.8e+04 -6.5 30.1 3.0 1 1 0 1 1 1 0 Acyltransferase family TPR_1 PF00515.28 gi|88601418|ref|YP_501596.1| - 2.7e-40 134.6 4.3 7.3e-09 35.1 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88601418|ref|YP_501596.1| - 2.5e-35 119.9 12.5 4.1e-10 39.2 1.8 5.5 2 2 4 6 6 6 5 TPR repeat TPR_8 PF13181.6 gi|88601418|ref|YP_501596.1| - 6.3e-34 113.3 2.8 2.2e-06 27.4 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88601418|ref|YP_501596.1| - 1.8e-33 111.9 4.1 7e-07 28.9 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88601418|ref|YP_501596.1| - 3.5e-26 89.6 6.4 8.9e-05 22.6 0.2 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88601418|ref|YP_501596.1| - 9e-22 77.5 3.8 5e-09 36.7 0.7 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88601418|ref|YP_501596.1| - 7.1e-20 71.1 4.0 1.7e-09 37.8 0.1 4.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88601418|ref|YP_501596.1| - 9.5e-20 69.1 2.1 0.00016 21.5 0.1 5.3 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88601418|ref|YP_501596.1| - 1.5e-19 69.0 0.2 4.3e-05 24.0 0.1 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88601418|ref|YP_501596.1| - 4.1e-15 55.1 8.7 1.9e-06 27.6 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88601418|ref|YP_501596.1| - 7.7e-14 52.0 0.4 1.4e-05 25.5 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88601418|ref|YP_501596.1| - 4.7e-12 45.7 3.5 0.00088 19.8 0.0 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88601418|ref|YP_501596.1| - 1.3e-11 44.5 0.0 2.6e-05 24.3 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88601418|ref|YP_501596.1| - 4.4e-10 39.7 0.2 0.00027 21.1 0.0 2.3 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 gi|88601418|ref|YP_501596.1| - 1.2e-05 25.1 1.0 0.094 12.7 0.6 4.6 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88601418|ref|YP_501596.1| - 1.5e-05 24.3 0.3 0.15 11.2 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88601418|ref|YP_501596.1| - 2e-05 24.6 0.5 3.3 7.8 0.0 3.9 2 1 2 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88601418|ref|YP_501596.1| - 2.9e-05 23.2 0.5 0.063 12.2 0.1 2.4 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|88601418|ref|YP_501596.1| - 7.6e-05 23.0 0.0 0.035 14.7 0.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat DUF5113 PF17140.4 gi|88601418|ref|YP_501596.1| - 0.00065 19.5 4.6 0.016 15.1 0.0 3.7 1 1 3 4 4 4 1 Domain of unknown function (DUF5113) ANAPC5 PF12862.7 gi|88601418|ref|YP_501596.1| - 0.0034 17.4 0.9 2.2 8.4 0.0 3.3 2 2 1 3 3 3 1 Anaphase-promoting complex subunit 5 RPN7 PF10602.9 gi|88601418|ref|YP_501596.1| - 0.0061 16.3 1.9 0.66 9.7 0.1 3.3 2 2 2 4 4 4 1 26S proteasome subunit RPN7 TPR_20 PF14561.6 gi|88601418|ref|YP_501596.1| - 0.0063 16.8 0.2 6.3 7.2 0.0 3.3 2 2 1 3 3 3 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88601418|ref|YP_501596.1| - 0.0067 16.1 3.3 1.4 8.6 0.1 3.7 1 1 3 4 4 4 2 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|88601418|ref|YP_501596.1| - 0.0071 16.4 1.0 9.1 6.4 0.0 4.0 1 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.14 gi|88601418|ref|YP_501596.1| - 0.0079 15.6 0.1 2 7.7 0.0 2.8 1 1 2 3 3 3 1 Coatomer epsilon subunit ChAPs PF09295.10 gi|88601418|ref|YP_501596.1| - 0.0092 15.0 0.2 0.92 8.4 0.0 2.4 1 1 1 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) BTAD PF03704.17 gi|88601418|ref|YP_501596.1| - 0.032 14.7 0.4 7.9 6.9 0.1 2.5 2 1 1 3 3 3 0 Bacterial transcriptional activator domain FAT PF02259.23 gi|88601418|ref|YP_501596.1| - 0.033 13.4 1.3 1.3 8.2 1.3 2.8 1 1 0 1 1 1 0 FAT domain Viral_DNA_bi PF02236.17 gi|88601418|ref|YP_501596.1| - 0.065 13.4 0.0 0.6 10.3 0.0 2.3 2 0 0 2 2 2 0 Viral DNA-binding protein, all alpha domain HTH_Bact PF18768.1 gi|88601418|ref|YP_501596.1| - 0.13 11.8 0.9 7.4 6.2 0.0 3.6 3 1 0 3 3 3 0 Helix-turn-helix bacterial domain Arch_fla_DE PF04659.13 gi|88601419|ref|YP_501597.1| - 0.0018 18.1 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein Arch_flagellin PF01917.16 gi|88601420|ref|YP_501598.1| - 6.3e-07 29.7 1.5 7.1e-07 29.5 1.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|88601421|ref|YP_501599.1| - 0.00013 22.2 4.2 0.00016 21.9 4.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Sarcoglycan_2 PF05510.13 gi|88601421|ref|YP_501599.1| - 0.091 11.5 0.2 0.22 10.3 0.0 1.6 1 1 1 2 2 2 0 Sarcoglycan alpha/epsilon ATPase PF06745.13 gi|88601422|ref|YP_501600.1| - 1.3e-22 80.3 0.2 1.5e-22 80.1 0.2 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|88601422|ref|YP_501600.1| - 1.2e-06 27.9 1.3 0.00034 19.9 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|88601422|ref|YP_501600.1| - 4.4e-05 22.9 0.1 0.00012 21.5 0.0 1.6 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|88601422|ref|YP_501600.1| - 0.00053 19.6 0.2 0.0073 15.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.12 gi|88601422|ref|YP_501600.1| - 0.0033 17.1 0.2 0.005 16.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ATP-synt_ab PF00006.25 gi|88601422|ref|YP_501600.1| - 0.15 11.7 0.0 13 5.4 0.0 2.7 2 1 1 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|88601423|ref|YP_501601.1| - 7.8e-45 153.0 0.0 1.1e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|88601423|ref|YP_501601.1| - 0.012 16.1 0.1 0.032 14.8 0.1 1.6 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|88601423|ref|YP_501601.1| - 0.026 14.3 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|88601424|ref|YP_501602.1| - 3.8e-06 26.9 0.1 6.6e-05 22.9 0.1 4.0 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F OAD_gamma PF04277.13 gi|88601425|ref|YP_501603.1| - 0.0059 17.2 0.1 0.0059 17.2 0.1 2.6 1 1 0 2 2 2 1 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 gi|88601425|ref|YP_501603.1| - 0.011 15.8 0.2 0.011 15.8 0.2 1.8 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3959 PF13105.6 gi|88601425|ref|YP_501603.1| - 0.044 13.3 0.5 0.067 12.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) Phage_Gp23 PF10669.9 gi|88601425|ref|YP_501603.1| - 0.54 10.6 9.1 3.2 8.1 0.0 2.5 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) DUF4834 PF16118.5 gi|88601425|ref|YP_501603.1| - 1.9 9.5 8.3 4 8.5 6.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4834) CheF-arch PF04283.12 gi|88601426|ref|YP_501604.1| - 7.8e-16 58.5 0.0 1.3e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Response_reg PF00072.24 gi|88601427|ref|YP_501605.1| - 1.6e-29 102.3 0.3 1.8e-29 102.2 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheB_methylest PF01339.17 gi|88601428|ref|YP_501606.1| - 1.2e-53 181.3 0.2 3.1e-51 173.5 0.2 2.8 3 0 0 3 3 3 2 CheB methylesterase Response_reg PF00072.24 gi|88601428|ref|YP_501606.1| - 2.5e-21 75.9 0.6 4.9e-21 75.0 0.6 1.5 1 0 0 1 1 1 1 Response regulator receiver domain DUF3798 PF12683.7 gi|88601428|ref|YP_501606.1| - 0.013 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) P2 PF07194.11 gi|88601429|ref|YP_501607.1| - 1.9e-29 101.5 0.8 4.5e-13 49.1 0.1 3.7 3 0 0 3 3 3 2 P2 response regulator binding domain Hpt PF01627.23 gi|88601429|ref|YP_501607.1| - 1.9e-18 66.5 0.1 5.5e-18 65.0 0.1 1.9 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|88601429|ref|YP_501607.1| - 1.8e-17 63.9 0.0 4.7e-17 62.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|88601429|ref|YP_501607.1| - 2.5e-17 62.8 1.3 1e-16 60.8 1.3 2.1 1 0 0 1 1 1 1 CheW-like domain CheC PF04509.12 gi|88601429|ref|YP_501607.1| - 2.4e-16 59.3 11.4 3.3e-09 36.5 2.3 3.0 3 0 0 3 3 3 2 CheC-like family H-kinase_dim PF02895.14 gi|88601429|ref|YP_501607.1| - 2.9e-11 43.6 3.9 2.9e-11 43.6 3.9 2.1 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain CheX PF13690.6 gi|88601429|ref|YP_501607.1| - 3.2e-06 27.2 1.4 0.00031 20.9 0.3 2.6 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX HATPase_c_2 PF13581.6 gi|88601429|ref|YP_501607.1| - 0.067 13.1 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|88601429|ref|YP_501607.1| - 0.075 12.9 0.1 0.22 11.3 0.1 1.8 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheD PF03975.13 gi|88601430|ref|YP_501608.1| - 6.7e-33 113.0 0.1 9.1e-33 112.6 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction TPR_2 PF07719.17 gi|88601431|ref|YP_501609.1| - 3.7e-23 79.7 0.9 2.9e-06 27.0 0.0 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88601431|ref|YP_501609.1| - 6.5e-22 76.4 1.5 9e-07 28.5 0.0 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88601431|ref|YP_501609.1| - 1.7e-18 65.2 2.0 2.8e-05 24.0 0.0 4.8 5 0 0 5 5 4 4 Tetratricopeptide repeat CheC PF04509.12 gi|88601431|ref|YP_501609.1| - 1e-17 63.7 5.0 5.3e-09 35.8 0.2 2.6 2 0 0 2 2 2 2 CheC-like family TPR_14 PF13428.6 gi|88601431|ref|YP_501609.1| - 3.6e-15 55.4 0.1 0.022 15.6 0.0 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88601431|ref|YP_501609.1| - 1.6e-14 54.2 0.1 3.8e-10 40.1 0.0 2.8 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88601431|ref|YP_501609.1| - 1.8e-14 53.1 0.2 0.00037 20.1 0.2 3.7 2 1 1 3 3 3 3 TPR repeat TPR_12 PF13424.6 gi|88601431|ref|YP_501609.1| - 2.3e-11 43.8 1.8 0.00019 21.6 0.0 3.5 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88601431|ref|YP_501609.1| - 6.1e-10 39.1 0.0 0.00035 20.7 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88601431|ref|YP_501609.1| - 6.3e-10 39.5 0.3 0.0067 17.0 0.0 4.1 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88601431|ref|YP_501609.1| - 6.5e-09 35.2 0.1 0.01 15.8 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88601431|ref|YP_501609.1| - 1.4e-08 34.8 2.8 0.098 13.3 0.1 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat CheX PF13690.6 gi|88601431|ref|YP_501609.1| - 1.5e-07 31.5 1.0 0.0011 19.1 0.1 2.4 1 1 1 2 2 2 2 Chemotaxis phosphatase CheX TPR_17 PF13431.6 gi|88601431|ref|YP_501609.1| - 8.6e-06 25.8 0.0 0.057 13.8 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88601431|ref|YP_501609.1| - 0.00013 22.2 0.4 0.021 15.0 0.0 2.5 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|88601431|ref|YP_501609.1| - 0.00015 21.5 0.8 0.72 9.8 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88601431|ref|YP_501609.1| - 0.00052 20.0 0.4 0.016 15.3 0.0 3.4 4 0 0 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|88601431|ref|YP_501609.1| - 0.0098 15.7 0.5 1.3 8.8 0.0 3.0 3 1 1 4 4 3 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_15 PF13429.6 gi|88601431|ref|YP_501609.1| - 0.2 10.9 0.1 0.81 8.8 0.0 2.0 2 1 0 2 2 2 0 Tetratricopeptide repeat PvlArgDC PF01862.16 gi|88601432|ref|YP_501610.1| - 1.8e-61 206.6 0.0 2.1e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) CPSase_sm_chain PF00988.22 gi|88601433|ref|YP_501611.1| - 3.6e-43 146.5 0.0 5.2e-43 145.9 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|88601433|ref|YP_501611.1| - 1.5e-37 129.2 0.0 2e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88601433|ref|YP_501611.1| - 9e-07 28.9 0.0 0.018 14.8 0.2 2.3 1 1 0 2 2 2 2 Peptidase C26 CPSase_L_D2 PF02786.17 gi|88601434|ref|YP_501612.1| - 2.7e-107 357.1 0.0 2.5e-69 233.0 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|88601434|ref|YP_501612.1| - 2.9e-36 124.5 0.0 7.1e-36 123.2 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|88601434|ref|YP_501612.1| - 1.1e-17 64.0 0.1 1.8e-16 60.1 0.1 2.9 3 0 0 3 3 3 1 MGS-like domain ATP-grasp PF02222.22 gi|88601434|ref|YP_501612.1| - 6.5e-17 61.6 0.0 1.6e-08 34.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|88601434|ref|YP_501612.1| - 8.7e-14 51.5 0.0 1.3e-05 24.9 0.0 2.8 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|88601434|ref|YP_501612.1| - 2.3e-13 50.0 0.0 2e-06 27.6 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|88601434|ref|YP_501612.1| - 2.2e-08 34.3 0.0 0.0001 22.4 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|88601434|ref|YP_501612.1| - 5.5e-05 22.7 0.0 0.089 12.2 0.0 3.7 2 1 1 3 3 3 1 ATP-grasp domain Glyco_trans_4_2 PF13477.6 gi|88601434|ref|YP_501612.1| - 0.0023 18.0 0.1 0.84 9.7 0.0 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like Isochorismatase PF00857.20 gi|88601434|ref|YP_501612.1| - 0.047 13.9 0.2 0.91 9.7 0.0 2.7 3 0 0 3 3 3 0 Isochorismatase family Epimerase PF01370.21 gi|88601434|ref|YP_501612.1| - 0.12 11.9 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Arginosuc_synth PF00764.19 gi|88601435|ref|YP_501613.1| - 5e-163 542.9 0.0 5.8e-163 542.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|88601435|ref|YP_501613.1| - 0.0032 17.0 0.0 0.0058 16.2 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Response_reg PF00072.24 gi|88601436|ref|YP_501614.1| - 6.9e-22 77.7 0.2 4.5e-21 75.1 0.3 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|88601436|ref|YP_501614.1| - 1.6e-07 31.3 0.1 3.5e-07 30.2 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|88601436|ref|YP_501614.1| - 7.6e-05 22.9 0.1 0.00014 22.0 0.1 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|88601436|ref|YP_501614.1| - 0.065 13.3 0.1 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 PAS domain PAS_4 PF08448.10 gi|88601436|ref|YP_501614.1| - 0.17 12.1 0.0 0.64 10.3 0.0 1.9 1 1 0 1 1 1 0 PAS fold Glycos_transf_2 PF00535.26 gi|88601437|ref|YP_501615.1| - 2.2e-30 105.7 0.0 3.5e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88601437|ref|YP_501615.1| - 2.7e-14 53.6 0.0 7.1e-14 52.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|88601437|ref|YP_501615.1| - 7.1e-08 32.1 0.0 1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|88601437|ref|YP_501615.1| - 2.7e-07 30.7 0.0 3.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|88601437|ref|YP_501615.1| - 1e-06 28.4 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|88601437|ref|YP_501615.1| - 0.00055 20.4 0.0 0.00099 19.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|88601438|ref|YP_501616.1| - 2.6e-19 69.4 0.0 3.6e-19 68.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88601438|ref|YP_501616.1| - 6.3e-18 65.5 0.0 9.7e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88601438|ref|YP_501616.1| - 1.5e-12 47.9 0.3 4e-12 46.4 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|88601438|ref|YP_501616.1| - 0.0012 19.3 0.0 0.015 15.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|88601438|ref|YP_501616.1| - 0.0035 17.7 0.1 0.016 15.6 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Amino_oxidase PF01593.24 gi|88601439|ref|YP_501617.1| - 3.1e-24 86.1 0.0 4.2e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|88601439|ref|YP_501617.1| - 6.2e-12 45.6 0.1 1.8e-11 44.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|88601439|ref|YP_501617.1| - 7.2e-05 22.2 0.1 0.00011 21.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|88601439|ref|YP_501617.1| - 0.00096 19.7 0.1 0.006 17.1 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|88601439|ref|YP_501617.1| - 0.0011 18.6 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|88601439|ref|YP_501617.1| - 0.014 14.6 0.0 0.028 13.7 0.0 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox_2 PF07992.14 gi|88601439|ref|YP_501617.1| - 0.015 14.6 0.0 0.032 13.5 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|88601439|ref|YP_501617.1| - 0.064 12.3 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Lactamase_B PF00753.27 gi|88601440|ref|YP_501618.1| - 1.6e-18 67.4 0.0 1.8e-16 60.8 0.0 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88601440|ref|YP_501618.1| - 1.4e-05 24.7 0.0 2.2e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88601441|ref|YP_501619.1| - 1.2e-14 54.7 0.1 1.4e-12 48.1 0.1 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88601441|ref|YP_501619.1| - 4.4e-06 26.3 0.1 8e-06 25.5 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|88601441|ref|YP_501619.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain CheR PF01739.18 gi|88601442|ref|YP_501620.1| - 3.1e-40 137.8 0.0 3.5e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain Methyltransf_25 PF13649.6 gi|88601442|ref|YP_501620.1| - 0.0082 16.8 0.0 0.028 15.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain DNA_primase_S PF01896.19 gi|88601442|ref|YP_501620.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA primase small subunit UPF0020 PF01170.18 gi|88601443|ref|YP_501621.1| - 7e-28 97.7 0.1 2.2e-27 96.1 0.1 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|88601443|ref|YP_501621.1| - 9.9e-11 42.1 0.1 3.8e-10 40.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601443|ref|YP_501621.1| - 3.3e-09 37.3 0.0 7.2e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|88601443|ref|YP_501621.1| - 2.9e-08 33.7 0.0 1.2e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.6 gi|88601443|ref|YP_501621.1| - 5.5e-06 26.3 0.0 9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|88601443|ref|YP_501621.1| - 6.1e-06 25.9 0.2 0.0016 17.9 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|88601443|ref|YP_501621.1| - 0.0035 16.9 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|88601443|ref|YP_501621.1| - 0.046 13.6 0.0 0.097 12.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|88601443|ref|YP_501621.1| - 0.074 12.3 0.0 0.27 10.5 0.0 1.8 1 1 1 2 2 2 0 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|88601443|ref|YP_501621.1| - 0.075 12.7 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical protein 95 THUMP PF02926.17 gi|88601443|ref|YP_501621.1| - 0.078 13.1 0.0 5.1 7.2 0.0 2.3 2 0 0 2 2 2 0 THUMP domain Response_reg PF00072.24 gi|88601444|ref|YP_501622.1| - 3.5e-29 101.2 0.2 3.9e-29 101.1 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FAD_binding_4 PF01565.23 gi|88601444|ref|YP_501622.1| - 0.024 14.4 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DnaJ_C PF01556.18 gi|88601445|ref|YP_501623.1| - 5.3e-38 130.4 0.1 1.2e-35 122.8 0.1 2.0 1 1 1 2 2 2 2 DnaJ C terminal domain DnaJ PF00226.31 gi|88601445|ref|YP_501623.1| - 8.8e-29 99.4 2.3 1.4e-28 98.8 2.3 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|88601445|ref|YP_501623.1| - 1.9e-13 50.5 20.6 3.2e-13 49.8 20.6 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|88601445|ref|YP_501623.1| - 0.00056 19.8 19.6 0.0065 16.4 5.9 2.7 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein Cytochrom_c3_2 PF14537.6 gi|88601445|ref|YP_501623.1| - 0.38 11.2 8.4 0.78 10.2 8.4 1.5 1 0 0 1 1 1 0 Cytochrome c3 Lar_restr_allev PF14354.6 gi|88601445|ref|YP_501623.1| - 2.7 8.4 10.2 12 6.4 4.0 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar HypA PF01155.19 gi|88601445|ref|YP_501623.1| - 6 6.9 13.6 0.97 9.5 3.0 2.3 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|88601445|ref|YP_501623.1| - 6.7 6.3 10.2 2.4 7.8 1.0 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 HSP70 PF00012.20 gi|88601446|ref|YP_501624.1| - 1e-247 823.2 18.9 3.3e-245 814.9 18.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|88601446|ref|YP_501624.1| - 4.7e-19 68.4 2.3 4.7e-19 68.4 2.3 2.0 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|88601446|ref|YP_501624.1| - 0.0019 18.0 0.0 0.0094 15.7 0.0 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Atg14 PF10186.9 gi|88601446|ref|YP_501624.1| - 0.78 8.8 7.1 1.5 7.9 7.1 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FtsA PF14450.6 gi|88601446|ref|YP_501624.1| - 1.7 9.1 10.1 2.5 8.6 0.3 3.7 3 2 0 3 3 3 0 Cell division protein FtsA DUF3347 PF11827.8 gi|88601446|ref|YP_501624.1| - 3.5 7.8 14.3 3.4 7.8 12.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) RTX_C PF08339.10 gi|88601446|ref|YP_501624.1| - 6.4 6.8 11.9 4.4 7.4 8.8 2.3 2 0 0 2 2 2 0 RTX C-terminal domain GrpE PF01025.19 gi|88601447|ref|YP_501625.1| - 6e-42 143.1 0.1 7.2e-42 142.9 0.1 1.1 1 0 0 1 1 1 1 GrpE Peptidase_M3 PF01432.20 gi|88601448|ref|YP_501626.1| - 2.1e-27 96.5 0.0 3.4e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M3 Ferritin PF00210.24 gi|88601449|ref|YP_501627.1| - 5.9e-38 130.0 0.1 6.6e-38 129.8 0.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|88601449|ref|YP_501627.1| - 4.6e-06 27.1 0.0 0.0015 19.0 0.0 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 gi|88601449|ref|YP_501627.1| - 0.00018 21.8 0.0 0.001 19.3 0.0 1.9 1 1 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|88601449|ref|YP_501627.1| - 0.0026 17.6 0.1 0.026 14.3 0.1 2.0 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.12 gi|88601449|ref|YP_501627.1| - 0.0062 15.5 0.1 0.63 9.0 0.0 2.1 2 0 0 2 2 2 2 Manganese containing catalase Polbeta PF18765.1 gi|88601450|ref|YP_501628.1| - 3e-11 43.2 0.1 4e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88601450|ref|YP_501628.1| - 6.6e-05 23.1 0.0 0.0001 22.5 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Arm_3 PF16186.5 gi|88601450|ref|YP_501628.1| - 0.081 12.5 1.4 11 5.6 0.1 2.3 2 0 0 2 2 2 0 Atypical Arm repeat F-box PF00646.33 gi|88601450|ref|YP_501628.1| - 0.087 12.7 0.3 0.16 11.9 0.3 1.4 1 0 0 1 1 1 0 F-box domain Adenyl_cycl_N PF12633.7 gi|88601450|ref|YP_501628.1| - 0.14 12.1 0.1 0.3 11.0 0.1 1.5 1 1 1 2 2 2 0 Adenylate cyclase NT domain PEGA PF08308.11 gi|88601451|ref|YP_501629.1| - 4.6e-28 96.9 2.3 3e-14 52.6 0.0 2.4 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|88601451|ref|YP_501629.1| - 1.6e-06 28.3 0.9 0.00073 19.8 0.4 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|88601451|ref|YP_501629.1| - 6e-05 22.8 3.3 0.00072 19.3 2.1 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II CarbopepD_reg_2 PF13715.6 gi|88601451|ref|YP_501629.1| - 0.00024 21.1 0.2 0.012 15.6 0.1 2.6 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF2846 PF11008.8 gi|88601451|ref|YP_501629.1| - 0.033 14.2 1.0 0.22 11.5 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2846) PBP PF01161.20 gi|88601452|ref|YP_501630.1| - 5.9e-23 81.6 0.0 7.2e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ApbE PF02424.15 gi|88601453|ref|YP_501631.1| - 0.0003 20.4 1.6 0.013 15.0 1.5 2.1 1 1 0 1 1 1 1 ApbE family Fer4 PF00037.27 gi|88601454|ref|YP_501632.1| - 1.8e-12 46.5 12.4 3.3e-06 26.7 2.8 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88601454|ref|YP_501632.1| - 1.7e-10 40.5 12.0 2.1e-05 24.4 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88601454|ref|YP_501632.1| - 5.7e-10 39.6 20.7 1.6e-07 31.8 10.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88601454|ref|YP_501632.1| - 3.5e-09 36.7 20.5 2.8e-06 27.4 11.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88601454|ref|YP_501632.1| - 1.1e-08 34.6 12.9 0.00012 22.0 1.1 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88601454|ref|YP_501632.1| - 2.3e-08 33.9 11.8 0.00035 20.9 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88601454|ref|YP_501632.1| - 3.4e-08 34.3 8.2 0.00085 20.2 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88601454|ref|YP_501632.1| - 1.5e-06 28.2 14.4 0.0036 17.4 2.7 2.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88601454|ref|YP_501632.1| - 2.2e-06 27.7 14.2 0.0047 17.0 2.7 2.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601454|ref|YP_501632.1| - 8.4e-05 23.0 7.2 0.058 13.9 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88601454|ref|YP_501632.1| - 0.00012 22.6 12.6 0.00045 20.7 2.6 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88601454|ref|YP_501632.1| - 0.00014 22.6 9.8 0.058 14.2 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88601454|ref|YP_501632.1| - 0.00056 20.3 12.2 0.081 13.4 1.8 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88601454|ref|YP_501632.1| - 0.00058 20.0 9.5 0.0016 18.6 8.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88601454|ref|YP_501632.1| - 0.006 17.4 15.2 0.33 12.0 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88601454|ref|YP_501632.1| - 0.044 14.5 11.5 0.44 11.3 1.9 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|88601454|ref|YP_501632.1| - 1.5 8.7 10.2 1.9 8.3 1.9 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type ETF_QO PF05187.13 gi|88601454|ref|YP_501632.1| - 2.6 8.2 5.1 1.3 9.2 1.5 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S HcyBio PF01837.16 gi|88601455|ref|YP_501633.1| - 5.2e-141 469.5 0.1 8.3e-141 468.8 0.1 1.3 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|88601455|ref|YP_501633.1| - 8.3e-24 83.8 1.7 1.6e-11 44.5 0.0 2.9 3 0 0 3 3 3 2 CBS domain ILVD_EDD PF00920.21 gi|88601456|ref|YP_501634.1| - 6.6e-213 708.0 1.2 7.5e-213 707.8 1.2 1.0 1 0 0 1 1 1 1 Dehydratase family CxxCxxCC PF03692.15 gi|88601457|ref|YP_501635.1| - 0.00016 22.3 8.0 0.00037 21.1 8.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Isochorismatase PF00857.20 gi|88601458|ref|YP_501636.1| - 6.2e-38 130.7 0.1 6.9e-38 130.6 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family Polbeta PF18765.1 gi|88601459|ref|YP_501637.1| - 1.3e-08 34.8 0.1 1.5e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88601459|ref|YP_501637.1| - 1.4e-08 34.9 0.3 1.5e-08 34.8 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|88601459|ref|YP_501637.1| - 0.16 11.7 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 TylF PF05711.11 gi|88601460|ref|YP_501638.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) AAA_15 PF13175.6 gi|88601461|ref|YP_501639.1| - 1e-12 48.5 0.0 1.1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|88601461|ref|YP_501639.1| - 6.3e-10 39.4 0.1 6.8e-10 39.2 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601461|ref|YP_501639.1| - 3.4e-09 36.5 0.0 4.1e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88601461|ref|YP_501639.1| - 2e-07 31.7 0.0 2.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|88601461|ref|YP_501639.1| - 6.3e-06 25.7 0.1 6.7e-06 25.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|88601461|ref|YP_501639.1| - 0.00095 19.7 0.0 0.0013 19.2 0.0 1.2 1 1 0 1 1 1 1 ABC transporter AAA_27 PF13514.6 gi|88601461|ref|YP_501639.1| - 0.0018 17.9 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601461|ref|YP_501639.1| - 0.0021 17.8 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|88601461|ref|YP_501639.1| - 0.12 12.9 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|88601461|ref|YP_501639.1| - 0.16 12.1 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88601461|ref|YP_501639.1| - 0.19 11.4 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF772 PF05598.11 gi|88601462|ref|YP_501640.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88601462|ref|YP_501640.1| - 6.5e-11 42.5 0.0 6.5e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601462|ref|YP_501640.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88601462|ref|YP_501640.1| - 0.19 12.1 3.7 0.31 11.5 3.7 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88601462|ref|YP_501640.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 AAA_21 PF13304.6 gi|88601463|ref|YP_501641.1| - 7.4e-20 72.0 0.1 8.4e-20 71.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88601463|ref|YP_501641.1| - 2.2e-11 44.1 0.0 2.4e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|88601463|ref|YP_501641.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Malic_M PF03949.15 gi|88601464|ref|YP_501642.1| - 5.1e-29 101.3 0.3 3.9e-28 98.4 0.3 2.0 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|88601464|ref|YP_501642.1| - 1.8e-28 99.6 0.3 1.4e-21 77.1 0.3 2.7 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain 2-Hacid_dh_C PF02826.19 gi|88601464|ref|YP_501642.1| - 0.14 11.5 0.3 4.2 6.7 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IL6Ra-bind PF09240.10 gi|88601464|ref|YP_501642.1| - 0.16 12.4 0.0 4.4 7.8 0.0 2.4 2 0 0 2 2 2 0 Interleukin-6 receptor alpha chain, binding STAS PF01740.21 gi|88601465|ref|YP_501643.1| - 2.3e-10 40.1 0.0 4e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 STAS domain PAS PF00989.25 gi|88601465|ref|YP_501643.1| - 6.3e-09 35.8 0.0 1.8e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|88601465|ref|YP_501643.1| - 2e-06 28.0 0.1 1e-05 25.7 0.1 2.0 2 0 0 2 2 2 1 PAS domain DUF1805 PF08827.11 gi|88601465|ref|YP_501643.1| - 0.0018 18.6 0.2 0.0049 17.2 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) PAS_4 PF08448.10 gi|88601465|ref|YP_501643.1| - 0.015 15.5 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 PAS fold STAS_2 PF13466.6 gi|88601465|ref|YP_501643.1| - 0.017 15.5 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 STAS domain PG_binding_4 PF12229.8 gi|88601465|ref|YP_501643.1| - 0.021 15.1 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain PAS_8 PF13188.7 gi|88601465|ref|YP_501643.1| - 0.031 14.3 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 PAS domain TGT PF01702.18 gi|88601465|ref|YP_501643.1| - 0.08 12.1 0.1 0.095 11.8 0.1 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase OB_aCoA_assoc PF01796.17 gi|88601466|ref|YP_501644.1| - 6.1e-17 61.4 0.0 7.9e-17 61.0 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|88601466|ref|YP_501644.1| - 4.7e-11 42.3 3.8 7.5e-11 41.7 3.8 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.6 gi|88601466|ref|YP_501644.1| - 0.018 14.8 2.4 0.11 12.2 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|88601466|ref|YP_501644.1| - 0.16 12.0 1.1 3.9 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-ribbon Thiolase_N PF00108.23 gi|88601467|ref|YP_501645.1| - 1.7e-31 109.6 0.2 2.6e-31 108.9 0.2 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|88601467|ref|YP_501645.1| - 1.3e-10 41.0 0.8 9.2e-10 38.2 0.8 2.4 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|88601467|ref|YP_501645.1| - 0.00032 20.3 3.3 0.00032 20.3 3.3 3.1 2 1 2 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|88601467|ref|YP_501645.1| - 0.021 13.6 0.1 0.042 12.6 0.1 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Ketoacyl-synt_C PF02801.22 gi|88601467|ref|YP_501645.1| - 0.045 13.8 0.1 5.1 7.1 0.0 2.8 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|88601467|ref|YP_501645.1| - 0.48 10.3 3.5 8.4 6.3 0.7 2.7 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|88601468|ref|YP_501646.1| - 5.2e-08 33.0 0.0 1.2e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|88601468|ref|YP_501646.1| - 6.8e-08 32.6 0.7 1.1e-07 31.9 0.7 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|88601468|ref|YP_501646.1| - 0.0029 17.3 0.6 0.011 15.4 0.2 1.9 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|88601468|ref|YP_501646.1| - 0.008 15.6 0.8 0.013 14.9 0.8 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|88601468|ref|YP_501646.1| - 0.0081 16.0 1.3 0.022 14.6 1.3 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|88601469|ref|YP_501647.1| - 1.6e-09 37.6 0.0 3.1e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|88601469|ref|YP_501647.1| - 0.00019 21.7 0.0 0.00041 20.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|88601469|ref|YP_501647.1| - 0.00078 19.4 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|88601469|ref|YP_501647.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|88601469|ref|YP_501647.1| - 0.17 11.9 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|88601469|ref|YP_501647.1| - 0.22 11.7 0.0 1.5 8.9 0.0 2.0 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF3795 PF12675.7 gi|88601470|ref|YP_501648.1| - 9.1e-08 32.4 21.2 1.3e-07 31.9 8.1 2.4 2 1 1 3 3 3 2 Protein of unknown function (DUF3795) HSP20 PF00011.21 gi|88601471|ref|YP_501649.1| - 1.6e-13 50.6 0.2 2e-13 50.4 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|88601471|ref|YP_501649.1| - 1.7e-08 33.9 0.0 2.9e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA AAL_decarboxy PF03306.13 gi|88601472|ref|YP_501650.1| - 1.1e-65 221.0 0.0 1.3e-65 220.8 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase DUF3147 PF11345.8 gi|88601474|ref|YP_501652.1| - 9.5e-09 35.6 9.2 1.1e-08 35.4 9.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) GlpM PF06942.12 gi|88601474|ref|YP_501652.1| - 0.0034 17.8 7.0 0.0043 17.4 7.0 1.2 1 0 0 1 1 1 1 GlpM protein DUF417 PF04224.12 gi|88601474|ref|YP_501652.1| - 0.93 9.0 12.0 0.065 12.8 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF417 IBV_3C PF03620.13 gi|88601474|ref|YP_501652.1| - 1.9 9.1 5.0 6.8 7.2 1.4 2.2 2 0 0 2 2 2 0 IBV 3C protein UPF0715 PF17094.5 gi|88601474|ref|YP_501652.1| - 7.5 7.1 13.5 21 5.7 5.6 2.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0715) TauE PF01925.19 gi|88601475|ref|YP_501653.1| - 6.2e-35 120.9 30.7 7.7e-35 120.6 30.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Response_reg PF00072.24 gi|88601476|ref|YP_501654.1| - 2e-23 82.7 0.2 2.2e-23 82.6 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88601477|ref|YP_501655.1| - 5.4e-20 72.0 0.5 1.2e-19 70.8 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88601477|ref|YP_501655.1| - 7.5e-17 61.4 0.0 3.5e-08 33.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|88601477|ref|YP_501655.1| - 2.9e-12 46.8 0.0 2.9e-05 24.3 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88601477|ref|YP_501655.1| - 1.2e-11 44.8 0.4 0.00013 22.1 0.0 4.1 4 2 0 4 4 3 2 PAS domain HATPase_c_5 PF14501.6 gi|88601477|ref|YP_501655.1| - 1.4e-08 34.6 0.0 3.1e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|88601477|ref|YP_501655.1| - 1.1e-06 28.6 1.4 3.2e-06 27.1 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|88601477|ref|YP_501655.1| - 1.2e-05 25.2 0.0 0.031 14.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 gi|88601477|ref|YP_501655.1| - 0.00084 19.5 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain DUF3450 PF11932.8 gi|88601477|ref|YP_501655.1| - 0.031 13.6 0.3 0.056 12.7 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Peptidase_C65 PF10275.9 gi|88601477|ref|YP_501655.1| - 0.039 13.4 1.6 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Peptidase C65 Otubain HMMR_N PF15905.5 gi|88601477|ref|YP_501655.1| - 0.045 13.2 2.7 0.064 12.7 2.7 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal LRRFIP PF09738.9 gi|88601477|ref|YP_501655.1| - 0.052 13.0 2.0 0.074 12.5 2.0 1.2 1 0 0 1 1 1 0 LRRFIP family Baculo_PEP_C PF04513.12 gi|88601477|ref|YP_501655.1| - 0.056 13.5 0.3 0.11 12.6 0.3 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_TATA_bd PF12325.8 gi|88601477|ref|YP_501655.1| - 0.063 13.5 2.7 0.12 12.7 2.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding PAS_3 PF08447.12 gi|88601477|ref|YP_501655.1| - 0.074 13.4 0.0 11 6.4 0.0 3.4 5 0 0 5 5 2 0 PAS fold CREPT PF16566.5 gi|88601477|ref|YP_501655.1| - 0.075 13.2 0.7 0.16 12.2 0.7 1.4 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour COG5 PF10392.9 gi|88601477|ref|YP_501655.1| - 0.078 13.2 4.1 0.15 12.3 4.1 1.4 1 0 0 1 1 1 0 Golgi transport complex subunit 5 MitMem_reg PF13012.6 gi|88601477|ref|YP_501655.1| - 0.097 13.1 0.8 0.26 11.7 0.6 1.7 2 0 0 2 2 1 0 Maintenance of mitochondrial structure and function Fez1 PF06818.15 gi|88601477|ref|YP_501655.1| - 0.1 13.0 1.3 0.17 12.3 1.3 1.2 1 0 0 1 1 1 0 Fez1 HOOK PF05622.12 gi|88601477|ref|YP_501655.1| - 0.11 10.7 3.3 0.17 10.0 3.3 1.2 1 0 0 1 1 1 0 HOOK protein HATPase_c_2 PF13581.6 gi|88601477|ref|YP_501655.1| - 0.17 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain NYD-SP28 PF14772.6 gi|88601477|ref|YP_501655.1| - 0.3 11.2 3.1 0.68 10.0 3.1 1.5 1 0 0 1 1 1 0 Sperm tail ZapB PF06005.12 gi|88601477|ref|YP_501655.1| - 0.48 10.9 4.1 0.93 10.0 4.1 1.4 1 0 0 1 1 1 0 Cell division protein ZapB Bap31_Bap29_C PF18035.1 gi|88601477|ref|YP_501655.1| - 2.4 8.2 7.1 4.5 7.3 7.1 1.5 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain Response_reg PF00072.24 gi|88601478|ref|YP_501656.1| - 1.3e-21 76.8 0.2 2.4e-21 76.0 0.1 1.5 2 0 0 2 2 2 1 Response regulator receiver domain Chordopox_A33R PF05966.12 gi|88601478|ref|YP_501656.1| - 0.062 12.6 0.0 0.08 12.2 0.0 1.3 1 0 0 1 1 1 0 Chordopoxvirus A33R protein sCache_2 PF17200.4 gi|88601479|ref|YP_501657.1| - 1.3e-05 25.1 0.0 1.5e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|88601479|ref|YP_501657.1| - 0.0004 19.7 0.0 0.00052 19.3 0.0 1.1 1 0 0 1 1 1 1 Cache domain Competence PF03772.16 gi|88601480|ref|YP_501658.1| - 0.073 12.4 8.6 0.07 12.4 3.6 2.0 2 0 0 2 2 2 0 Competence protein DUF872 PF05915.12 gi|88601480|ref|YP_501658.1| - 0.67 10.1 0.0 0.67 10.1 0.0 2.5 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Ycf70 PF17382.2 gi|88601480|ref|YP_501658.1| - 0.87 10.0 0.1 0.87 10.0 0.1 2.5 2 1 0 2 2 2 0 Uncharacterized Ycf70-like DUF1129 PF06570.11 gi|88601480|ref|YP_501658.1| - 2.8 7.4 4.2 2.1 7.8 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) OCRE PF17780.1 gi|88601481|ref|YP_501659.1| - 6.7e-08 32.4 9.9 6.7e-08 32.4 9.9 2.7 3 1 0 3 3 3 1 OCRE domain DUF3305 PF11749.8 gi|88601481|ref|YP_501659.1| - 0.056 13.6 0.1 0.15 12.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3305) CBFD_NFYB_HMF PF00808.23 gi|88601482|ref|YP_501660.1| - 1.3e-14 54.2 0.3 1.4e-14 54.1 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|88601482|ref|YP_501660.1| - 3.6e-10 40.3 0.1 4e-10 40.2 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|88601482|ref|YP_501660.1| - 8.9e-08 32.2 0.1 9.8e-08 32.1 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|88601482|ref|YP_501660.1| - 2.8e-07 30.6 0.9 3.1e-07 30.4 0.9 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|88601482|ref|YP_501660.1| - 0.0025 18.3 0.0 0.0028 18.1 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 gi|88601482|ref|YP_501660.1| - 0.0039 17.2 0.0 0.0039 17.2 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.6 gi|88601482|ref|YP_501660.1| - 0.018 15.4 0.1 0.018 15.4 0.1 1.3 1 1 0 1 1 1 0 CENP-S protein TFIID-31kDa PF02291.15 gi|88601482|ref|YP_501660.1| - 0.018 15.1 0.1 0.018 15.1 0.1 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit AAA_lid_3 PF17862.1 gi|88601482|ref|YP_501660.1| - 0.17 11.8 3.1 0.25 11.2 0.3 2.4 1 1 0 2 2 2 0 AAA+ lid domain IL3Ra_N PF18611.1 gi|88601483|ref|YP_501661.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 IL-3 receptor alpha chain N-terminal domain AAA_14 PF13173.6 gi|88601484|ref|YP_501662.1| - 3e-30 104.9 0.0 7.8e-30 103.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88601484|ref|YP_501662.1| - 1.7e-13 50.8 0.1 2.6e-13 50.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) HTH_36 PF13730.6 gi|88601484|ref|YP_501662.1| - 0.065 13.2 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_22 PF13401.6 gi|88601484|ref|YP_501662.1| - 0.16 12.3 0.0 13 6.1 0.0 3.2 1 1 1 2 2 2 0 AAA domain Mntp PF02659.15 gi|88601485|ref|YP_501663.1| - 2e-45 154.3 15.4 2e-45 154.3 15.4 1.9 1 1 1 2 2 2 1 Putative manganese efflux pump GntP_permease PF02447.16 gi|88601486|ref|YP_501664.1| - 6.8e-28 97.5 32.9 3.5e-19 68.8 8.1 2.5 2 1 0 3 3 3 2 GntP family permease DUF3522 PF12036.8 gi|88601486|ref|YP_501664.1| - 0.023 15.0 0.2 0.023 15.0 0.2 3.4 4 1 0 4 4 4 0 Protein of unknown function (DUF3522) FUN14 PF04930.15 gi|88601486|ref|YP_501664.1| - 0.35 11.3 0.1 0.35 11.3 0.1 2.3 2 0 0 2 2 2 0 FUN14 family HATPase_c PF02518.26 gi|88601487|ref|YP_501665.1| - 3.7e-05 24.2 0.0 6.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase bZIP_1 PF00170.21 gi|88601487|ref|YP_501665.1| - 0.01 15.9 1.6 0.022 14.8 1.6 1.6 1 0 0 1 1 1 0 bZIP transcription factor Fmp27_WPPW PF10359.9 gi|88601487|ref|YP_501665.1| - 0.043 12.7 1.2 0.058 12.2 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CH PF00307.31 gi|88601487|ref|YP_501665.1| - 0.085 13.1 0.9 0.24 11.6 0.4 2.0 1 1 1 2 2 2 0 Calponin homology (CH) domain OmpH PF03938.14 gi|88601487|ref|YP_501665.1| - 0.22 11.9 4.8 0.45 10.8 4.8 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) NPV_P10 PF05531.12 gi|88601487|ref|YP_501665.1| - 0.26 11.8 3.0 0.65 10.5 3.0 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein BLI1 PF17324.2 gi|88601487|ref|YP_501665.1| - 0.37 11.5 4.8 0.82 10.4 3.1 2.1 2 0 0 2 2 2 0 BLOC-1 interactor 1 GIT_CC PF16559.5 gi|88601487|ref|YP_501665.1| - 0.49 10.3 4.4 0.31 10.9 1.6 2.1 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DivIC PF04977.15 gi|88601487|ref|YP_501665.1| - 0.67 9.8 10.6 0.13 12.0 6.6 1.8 2 0 0 2 2 2 0 Septum formation initiator HisKA PF00512.25 gi|88601487|ref|YP_501665.1| - 0.87 9.7 4.5 1.2 9.2 0.0 2.5 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Fe-ADH PF00465.19 gi|88601488|ref|YP_501666.1| - 3.3e-116 388.1 0.0 3.7e-116 387.9 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|88601488|ref|YP_501666.1| - 6.7e-14 52.2 0.8 1.2e-09 38.3 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase zf-ACC PF17848.1 gi|88601488|ref|YP_501666.1| - 0.17 12.0 0.2 0.36 10.9 0.2 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain SpoIIE PF07228.12 gi|88601489|ref|YP_501667.1| - 9.3e-45 152.9 0.0 1.2e-44 152.5 0.0 1.2 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.12 gi|88601489|ref|YP_501667.1| - 1.3e-10 41.0 17.1 2.4e-10 40.2 17.1 1.4 1 0 0 1 1 1 1 5TMR of 5TMR-LYT DUF2371 PF10177.9 gi|88601489|ref|YP_501667.1| - 0.12 12.5 1.0 0.33 11.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) ThrE PF06738.12 gi|88601489|ref|YP_501667.1| - 3.2 7.1 11.7 0.25 10.7 4.1 2.2 1 1 1 2 2 2 0 Putative threonine/serine exporter PEPcase_2 PF14010.6 gi|88601490|ref|YP_501668.1| - 2.3e-193 643.2 0.0 2.6e-193 643.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF234 PF03008.14 gi|88601491|ref|YP_501669.1| - 2.7e-24 85.5 0.1 8.1e-24 84.0 0.1 1.8 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|88601491|ref|YP_501669.1| - 2e-22 80.3 0.0 3.8e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|88601491|ref|YP_501669.1| - 8.6e-07 29.1 0.0 2.4e-06 27.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|88601491|ref|YP_501669.1| - 3.8e-06 26.6 0.0 9.6e-06 25.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain AAA_22 PF13401.6 gi|88601491|ref|YP_501669.1| - 5.2e-06 26.8 0.0 1.1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.20 gi|88601491|ref|YP_501669.1| - 3.8e-05 23.5 1.7 4.3e-05 23.3 0.3 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family AAA_16 PF13191.6 gi|88601491|ref|YP_501669.1| - 0.00083 19.8 0.0 0.0017 18.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain HTH_45 PF14947.6 gi|88601491|ref|YP_501669.1| - 0.0057 16.6 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_9 PF08221.11 gi|88601491|ref|YP_501669.1| - 0.01 15.9 0.1 0.024 14.7 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TniB PF05621.11 gi|88601491|ref|YP_501669.1| - 0.022 14.2 0.1 0.36 10.2 0.0 2.4 2 1 0 2 2 2 0 Bacterial TniB protein HTH_24 PF13412.6 gi|88601491|ref|YP_501669.1| - 0.068 12.7 0.9 0.18 11.4 0.2 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|88601491|ref|YP_501669.1| - 0.095 12.7 4.1 2.6 8.1 0.2 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain PEPCK_GTP PF00821.18 gi|88601491|ref|YP_501669.1| - 0.15 10.8 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TrmB PF01978.19 gi|88601491|ref|YP_501669.1| - 0.16 11.9 0.3 0.45 10.4 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Ras PF00071.22 gi|88601491|ref|YP_501669.1| - 0.18 11.4 0.0 0.42 10.2 0.0 1.6 1 0 0 1 1 1 0 Ras family ABC2_membrane PF01061.24 gi|88601492|ref|YP_501670.1| - 1.8e-26 92.8 17.2 2.7e-26 92.3 17.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88601492|ref|YP_501670.1| - 1.3e-09 37.6 19.6 1.3e-09 37.6 19.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88601492|ref|YP_501670.1| - 6.1 6.0 19.8 2.4 7.4 16.9 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|88601493|ref|YP_501671.1| - 7.9e-27 94.4 0.0 1.2e-26 93.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601493|ref|YP_501671.1| - 2.4e-11 44.0 0.8 4.7e-07 29.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88601493|ref|YP_501671.1| - 1.2e-06 29.2 0.0 2.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|88601493|ref|YP_501671.1| - 9.6e-05 22.2 0.0 0.077 12.7 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain KdpD PF02702.17 gi|88601493|ref|YP_501671.1| - 0.00025 20.6 0.1 0.00064 19.3 0.0 1.6 1 1 1 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_23 PF13476.6 gi|88601493|ref|YP_501671.1| - 0.001 19.6 0.0 0.0014 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88601493|ref|YP_501671.1| - 0.0012 18.3 0.0 0.68 9.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|88601493|ref|YP_501671.1| - 0.008 16.5 0.0 0.021 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|88601493|ref|YP_501671.1| - 0.0093 15.7 0.0 0.11 12.1 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|88601493|ref|YP_501671.1| - 0.013 15.9 0.1 0.2 12.1 0.1 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|88601493|ref|YP_501671.1| - 0.019 14.7 1.1 0.036 13.8 0.5 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|88601493|ref|YP_501671.1| - 0.03 14.0 0.1 0.052 13.2 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|88601493|ref|YP_501671.1| - 0.047 14.1 0.1 0.17 12.2 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain Cytochrom_D1 PF02239.16 gi|88601493|ref|YP_501671.1| - 0.13 10.8 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain DnaJ PF00226.31 gi|88601494|ref|YP_501672.1| - 1.3e-08 34.9 2.3 2.3e-05 24.4 0.3 4.3 3 2 1 4 4 4 2 DnaJ domain DUF5063 PF16702.5 gi|88601494|ref|YP_501672.1| - 0.031 14.7 1.2 4.2 7.7 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF5063) DUF4363 PF14276.6 gi|88601494|ref|YP_501672.1| - 0.14 12.3 3.1 6.1 7.0 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) HSP70 PF00012.20 gi|88601495|ref|YP_501673.1| - 4.1e-141 471.1 1.5 4.9e-138 461.0 1.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|88601495|ref|YP_501673.1| - 2.4e-22 79.2 0.0 1.3e-21 76.7 0.0 2.0 1 1 0 1 1 1 1 MreB/Mbl protein BHD_1 PF10403.9 gi|88601495|ref|YP_501673.1| - 0.029 14.2 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 1 Raco_middle PF17651.1 gi|88601495|ref|YP_501673.1| - 0.099 12.3 0.0 0.37 10.5 0.0 2.1 1 1 1 2 2 2 0 RACo middle region Auxin_inducible PF02519.14 gi|88601495|ref|YP_501673.1| - 0.14 12.3 0.0 1.2 9.4 0.0 2.4 3 0 0 3 3 3 0 Auxin responsive protein FGGY_C PF02782.16 gi|88601495|ref|YP_501673.1| - 0.2 11.4 0.0 0.43 10.3 0.0 1.5 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain GrpE PF01025.19 gi|88601496|ref|YP_501674.1| - 5.7e-35 120.4 5.2 2.7e-32 111.7 0.1 2.3 2 0 0 2 2 2 2 GrpE Bacillus_HBL PF05791.11 gi|88601496|ref|YP_501674.1| - 0.00061 19.7 5.9 0.011 15.5 1.0 2.2 2 0 0 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) Hemagglutinin PF00509.18 gi|88601496|ref|YP_501674.1| - 0.00099 17.6 3.6 0.0018 16.8 3.6 1.3 1 0 0 1 1 1 1 Haemagglutinin TelA PF05816.11 gi|88601496|ref|YP_501674.1| - 0.001 18.2 0.7 0.001 18.2 0.7 1.8 2 0 0 2 2 2 1 Toxic anion resistance protein (TelA) SlyX PF04102.12 gi|88601496|ref|YP_501674.1| - 0.0018 18.9 8.2 0.0018 18.9 8.2 2.7 3 0 0 3 3 2 1 SlyX GAS PF13851.6 gi|88601496|ref|YP_501674.1| - 0.0036 16.7 14.4 0.02 14.3 5.6 2.3 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding DUF812 PF05667.11 gi|88601496|ref|YP_501674.1| - 0.0047 15.9 9.1 0.053 12.4 2.3 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF812) OmpH PF03938.14 gi|88601496|ref|YP_501674.1| - 0.0054 17.1 11.3 0.14 12.5 3.8 2.3 2 0 0 2 2 2 1 Outer membrane protein (OmpH-like) DUF4618 PF15397.6 gi|88601496|ref|YP_501674.1| - 0.0059 16.1 1.5 0.0059 16.1 1.5 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4618) Troponin PF00992.20 gi|88601496|ref|YP_501674.1| - 0.0061 16.9 3.6 0.0061 16.9 3.6 2.3 2 0 0 2 2 2 1 Troponin FliD_N PF02465.18 gi|88601496|ref|YP_501674.1| - 0.0096 16.6 6.0 2.8 8.7 0.1 2.9 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus TMCO5 PF14992.6 gi|88601496|ref|YP_501674.1| - 0.01 15.4 16.9 0.017 14.7 9.3 2.1 2 0 0 2 2 2 0 TMCO5 family Nsp1_C PF05064.13 gi|88601496|ref|YP_501674.1| - 0.011 15.5 9.1 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region EzrA PF06160.12 gi|88601496|ref|YP_501674.1| - 0.012 13.8 12.7 0.074 11.2 6.8 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Atg14 PF10186.9 gi|88601496|ref|YP_501674.1| - 0.013 14.6 5.7 0.32 10.1 1.5 2.3 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|88601496|ref|YP_501674.1| - 0.014 15.9 2.4 0.014 15.9 2.4 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region YkyA PF10368.9 gi|88601496|ref|YP_501674.1| - 0.016 14.9 13.7 0.15 11.7 1.4 2.3 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF5082 PF16888.5 gi|88601496|ref|YP_501674.1| - 0.017 15.4 3.5 0.017 15.4 3.5 3.3 2 2 2 4 4 4 0 Domain of unknown function (DUF5082) Vps5 PF09325.10 gi|88601496|ref|YP_501674.1| - 0.018 14.6 8.0 0.052 13.1 2.0 2.4 2 0 0 2 2 2 0 Vps5 C terminal like Spc29 PF17082.5 gi|88601496|ref|YP_501674.1| - 0.018 14.9 2.8 0.018 14.9 2.8 2.1 2 0 0 2 2 2 0 Spindle Pole Component 29 DUF16 PF01519.16 gi|88601496|ref|YP_501674.1| - 0.024 15.1 2.6 0.024 15.1 2.6 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|88601496|ref|YP_501674.1| - 0.025 14.8 7.5 0.025 14.8 7.5 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF4461 PF14688.6 gi|88601496|ref|YP_501674.1| - 0.027 14.3 2.1 0.078 12.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4461) UPF0242 PF06785.11 gi|88601496|ref|YP_501674.1| - 0.033 14.3 11.9 0.35 10.9 6.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF948 PF06103.11 gi|88601496|ref|YP_501674.1| - 0.033 14.4 7.0 0.23 11.7 1.6 2.8 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 gi|88601496|ref|YP_501674.1| - 0.036 14.6 8.0 0.077 13.6 2.9 2.9 2 1 1 3 3 3 0 Syntaxin 6, N-terminal HAP1_N PF04849.13 gi|88601496|ref|YP_501674.1| - 0.043 13.0 12.9 0.03 13.5 7.6 2.1 2 0 0 2 2 2 0 HAP1 N-terminal conserved region COG2 PF06148.11 gi|88601496|ref|YP_501674.1| - 0.053 13.6 7.0 0.51 10.4 2.3 2.5 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3818 PF12825.7 gi|88601496|ref|YP_501674.1| - 0.061 12.3 9.6 0.44 9.5 2.5 2.1 2 0 0 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) TMF_TATA_bd PF12325.8 gi|88601496|ref|YP_501674.1| - 0.064 13.5 14.0 0.041 14.1 7.3 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Phage_GP20 PF06810.11 gi|88601496|ref|YP_501674.1| - 0.065 13.0 14.6 0.23 11.2 4.8 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF1664 PF07889.12 gi|88601496|ref|YP_501674.1| - 0.069 13.2 11.1 0.05 13.6 5.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) TACC_C PF05010.14 gi|88601496|ref|YP_501674.1| - 0.086 12.6 16.7 0.36 10.6 8.0 2.5 2 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ATG16 PF08614.11 gi|88601496|ref|YP_501674.1| - 0.088 13.0 11.1 0.086 13.1 7.0 2.3 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) MCPsignal PF00015.21 gi|88601496|ref|YP_501674.1| - 0.097 12.5 1.0 0.2 11.4 1.0 1.5 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain WEMBL PF05701.11 gi|88601496|ref|YP_501674.1| - 0.1 11.2 10.7 0.052 12.2 3.3 2.0 2 0 0 2 2 2 0 Weak chloroplast movement under blue light DUF2935 PF11155.8 gi|88601496|ref|YP_501674.1| - 0.11 12.9 6.4 1.6 9.0 1.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) STAT_alpha PF01017.20 gi|88601496|ref|YP_501674.1| - 0.12 12.2 14.6 0.076 12.9 1.3 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain Rx_N PF18052.1 gi|88601496|ref|YP_501674.1| - 0.13 12.5 0.4 0.13 12.5 0.4 2.6 2 1 1 3 3 2 0 Rx N-terminal domain FAM76 PF16046.5 gi|88601496|ref|YP_501674.1| - 0.14 11.5 8.0 0.031 13.6 1.8 2.0 2 0 0 2 2 2 0 FAM76 protein Exonuc_VII_L PF02601.15 gi|88601496|ref|YP_501674.1| - 0.15 11.6 4.5 0.14 11.7 0.7 2.0 2 0 0 2 2 2 0 Exonuclease VII, large subunit DUF3584 PF12128.8 gi|88601496|ref|YP_501674.1| - 0.15 9.6 10.8 0.27 8.7 5.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|88601496|ref|YP_501674.1| - 0.16 11.3 2.8 0.46 9.8 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|88601496|ref|YP_501674.1| - 0.16 12.0 7.3 0.13 12.3 2.7 2.6 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 gi|88601496|ref|YP_501674.1| - 0.18 12.0 15.2 0.73 10.0 7.1 2.8 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family PCRF PF03462.18 gi|88601496|ref|YP_501674.1| - 0.23 11.3 11.9 2.3 8.1 4.9 2.2 2 0 0 2 2 2 0 PCRF domain P4Ha_N PF08336.11 gi|88601496|ref|YP_501674.1| - 0.27 11.3 8.2 0.082 12.9 2.7 2.4 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region ERM PF00769.19 gi|88601496|ref|YP_501674.1| - 0.28 11.0 11.7 0.35 10.6 5.4 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family RmuC PF02646.16 gi|88601496|ref|YP_501674.1| - 0.32 10.1 8.0 0.22 10.6 2.1 2.4 2 1 0 2 2 2 0 RmuC family Fez1 PF06818.15 gi|88601496|ref|YP_501674.1| - 0.34 11.3 11.1 0.26 11.7 4.3 2.1 2 0 0 2 2 2 0 Fez1 Prefoldin_2 PF01920.20 gi|88601496|ref|YP_501674.1| - 0.35 10.8 18.6 2 8.4 1.0 3.4 2 1 1 3 3 3 0 Prefoldin subunit DUF848 PF05852.11 gi|88601496|ref|YP_501674.1| - 0.38 10.9 10.8 0.096 12.8 3.0 2.4 2 1 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) End3 PF12761.7 gi|88601496|ref|YP_501674.1| - 0.39 10.9 12.1 2.9 8.0 4.8 2.9 2 1 1 3 3 3 0 Actin cytoskeleton-regulatory complex protein END3 Apolipoprotein PF01442.18 gi|88601496|ref|YP_501674.1| - 0.44 10.4 9.5 0.051 13.4 3.3 2.2 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain DASH_Spc19 PF08287.11 gi|88601496|ref|YP_501674.1| - 0.44 10.4 13.6 0.17 11.8 7.4 2.6 2 1 0 2 2 2 0 Spc19 FlaC_arch PF05377.11 gi|88601496|ref|YP_501674.1| - 0.44 11.0 7.4 4.4 7.8 1.6 3.5 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) FliD_C PF07195.12 gi|88601496|ref|YP_501674.1| - 0.46 9.9 8.9 7.3 5.9 0.2 2.9 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Tropomyosin_1 PF12718.7 gi|88601496|ref|YP_501674.1| - 0.46 10.6 18.8 3.4 7.8 1.2 2.5 2 1 0 2 2 2 0 Tropomyosin like DUF2433 PF10360.9 gi|88601496|ref|YP_501674.1| - 0.48 10.5 3.9 1.2 9.2 0.5 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF2433) BORCS7 PF16088.5 gi|88601496|ref|YP_501674.1| - 0.49 10.7 5.0 3.9 7.8 2.5 2.5 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 7 DUF3450 PF11932.8 gi|88601496|ref|YP_501674.1| - 0.54 9.5 9.2 0.1 11.9 4.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DASH_Dam1 PF08653.10 gi|88601496|ref|YP_501674.1| - 0.58 10.0 3.6 10 6.0 0.1 3.4 3 0 0 3 3 3 0 DASH complex subunit Dam1 YabA PF06156.13 gi|88601496|ref|YP_501674.1| - 0.61 10.7 10.6 3.6 8.3 3.7 2.6 2 0 0 2 2 2 0 Initiation control protein YabA Spc7 PF08317.11 gi|88601496|ref|YP_501674.1| - 0.61 8.9 15.8 1.1 8.1 9.0 2.4 2 1 0 2 2 2 0 Spc7 kinetochore protein DUF724 PF05266.14 gi|88601496|ref|YP_501674.1| - 0.62 9.9 9.1 1.1 9.1 3.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Uso1_p115_C PF04871.13 gi|88601496|ref|YP_501674.1| - 0.63 10.4 13.0 0.75 10.2 4.0 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region HAUS6_N PF14661.6 gi|88601496|ref|YP_501674.1| - 0.64 9.6 8.6 0.84 9.2 1.7 2.2 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Prominin PF05478.11 gi|88601496|ref|YP_501674.1| - 0.66 7.9 8.3 0.11 10.4 2.9 1.9 2 0 0 2 2 2 0 Prominin FapA PF03961.13 gi|88601496|ref|YP_501674.1| - 0.68 8.5 11.3 0.41 9.2 4.0 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A TMPIT PF07851.13 gi|88601496|ref|YP_501674.1| - 0.73 9.0 11.0 0.21 10.8 2.2 2.1 2 0 0 2 2 2 0 TMPIT-like protein AAA_13 PF13166.6 gi|88601496|ref|YP_501674.1| - 0.75 8.4 14.1 3 6.4 14.1 1.7 1 1 0 1 1 1 0 AAA domain Phage_GPO PF05929.11 gi|88601496|ref|YP_501674.1| - 0.75 9.4 5.8 0.6 9.7 1.5 2.1 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase XhlA PF10779.9 gi|88601496|ref|YP_501674.1| - 0.77 10.0 12.9 2.6 8.3 5.6 3.3 2 1 0 3 3 3 0 Haemolysin XhlA SPT16 PF08644.11 gi|88601496|ref|YP_501674.1| - 0.86 9.8 6.9 2 8.6 2.2 2.2 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) BLOC1_2 PF10046.9 gi|88601496|ref|YP_501674.1| - 0.93 9.8 11.2 2.6 8.4 5.6 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF489 PF04356.12 gi|88601496|ref|YP_501674.1| - 1 9.3 3.8 1.1 9.3 0.4 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF489) HemX PF04375.14 gi|88601496|ref|YP_501674.1| - 1.1 8.4 7.2 0.41 9.9 2.7 2.0 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase KxDL PF10241.9 gi|88601496|ref|YP_501674.1| - 1.2 9.5 12.1 0.41 10.9 5.9 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein GTA_holin_3TM PF11351.8 gi|88601496|ref|YP_501674.1| - 1.2 9.7 2.6 0.63 10.6 0.2 1.7 2 0 0 2 2 1 0 Holin of 3TMs, for gene-transfer release Prefoldin PF02996.17 gi|88601496|ref|YP_501674.1| - 1.3 9.0 14.6 2.6 8.0 3.7 3.3 2 1 1 3 3 3 0 Prefoldin subunit Tup_N PF08581.10 gi|88601496|ref|YP_501674.1| - 1.3 9.4 16.7 1.6 9.1 9.6 2.8 2 0 0 2 2 2 0 Tup N-terminal Lectin_N PF03954.14 gi|88601496|ref|YP_501674.1| - 1.4 8.7 8.1 8.9 6.1 3.9 3.0 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain DUF4200 PF13863.6 gi|88601496|ref|YP_501674.1| - 1.4 9.4 20.6 2 8.8 11.0 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) YlqD PF11068.8 gi|88601496|ref|YP_501674.1| - 1.4 9.3 12.0 1.6 9.1 5.8 2.3 2 0 0 2 2 2 0 YlqD protein SpecificRecomb PF10136.9 gi|88601496|ref|YP_501674.1| - 1.6 7.0 3.8 2.5 6.3 0.2 2.0 2 0 0 2 2 2 0 Site-specific recombinase NPV_P10 PF05531.12 gi|88601496|ref|YP_501674.1| - 1.7 9.2 9.8 22 5.6 4.8 3.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Jnk-SapK_ap_N PF09744.9 gi|88601496|ref|YP_501674.1| - 2 8.6 14.4 1.6 8.9 7.2 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 V_ATPase_I PF01496.19 gi|88601496|ref|YP_501674.1| - 2 6.2 8.9 4.1 5.2 8.9 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Glutaredoxin2_C PF04399.13 gi|88601496|ref|YP_501674.1| - 2.3 8.1 5.3 0.4 10.5 1.2 1.9 2 0 0 2 2 1 0 Glutaredoxin 2, C terminal domain Seryl_tRNA_N PF02403.22 gi|88601496|ref|YP_501674.1| - 2.6 8.3 15.8 4.7 7.5 7.4 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2730 PF10805.8 gi|88601496|ref|YP_501674.1| - 2.8 8.1 7.1 6.2 7.0 4.8 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF2730) TipAS PF07739.13 gi|88601496|ref|YP_501674.1| - 2.9 8.5 7.9 0.84 10.2 0.4 2.8 2 2 0 2 2 2 0 TipAS antibiotic-recognition domain Laminin_II PF06009.12 gi|88601496|ref|YP_501674.1| - 3.1 7.8 9.2 1.3 9.0 3.0 2.4 2 1 0 2 2 2 0 Laminin Domain II DUF2203 PF09969.9 gi|88601496|ref|YP_501674.1| - 3.3 8.4 7.9 6.6 7.5 2.0 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) CorA PF01544.18 gi|88601496|ref|YP_501674.1| - 3.7 6.8 8.1 4.2 6.6 3.4 2.3 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF4988 PF16378.5 gi|88601496|ref|YP_501674.1| - 3.9 7.1 7.8 11 5.6 2.0 2.9 2 1 1 3 3 3 0 Domain of unknown function USP8_interact PF08941.10 gi|88601496|ref|YP_501674.1| - 4.6 7.0 7.6 1.4 8.7 1.6 2.4 2 1 0 2 2 2 0 USP8 interacting MetOD2 PF18548.1 gi|88601496|ref|YP_501674.1| - 5.2 7.3 10.8 1.2 9.3 2.8 3.4 4 0 0 4 4 3 0 Metanogen output domain 2 ZapB PF06005.12 gi|88601496|ref|YP_501674.1| - 6.7 7.2 19.0 2.6 8.5 8.3 2.7 2 2 0 2 2 2 0 Cell division protein ZapB Swi5 PF07061.11 gi|88601496|ref|YP_501674.1| - 6.7 6.9 13.9 1.9 8.6 5.2 2.6 2 0 0 2 2 2 0 Swi5 RPW8 PF05659.11 gi|88601496|ref|YP_501674.1| - 6.9 6.4 9.8 11 5.7 1.9 3.0 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ACCA PF03255.14 gi|88601496|ref|YP_501674.1| - 7.4 6.4 12.3 8.9 6.2 5.6 2.6 2 1 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF2968 PF11180.8 gi|88601496|ref|YP_501674.1| - 8.8 5.9 9.3 0.92 9.1 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) FliT PF05400.13 gi|88601496|ref|YP_501674.1| - 9.1 7.2 9.6 72 4.3 9.6 2.4 1 1 0 1 1 1 0 Flagellar protein FliT DUF3368 PF11848.8 gi|88601497|ref|YP_501675.1| - 7.2e-11 41.7 0.8 1.5e-09 37.5 0.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3368) DDE_Tnp_1_6 PF13751.6 gi|88601498|ref|YP_501676.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601498|ref|YP_501676.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601498|ref|YP_501676.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601498|ref|YP_501676.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain MFS_1 PF07690.16 gi|88601499|ref|YP_501677.1| - 2.3e-36 125.4 46.0 7.3e-36 123.8 40.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88601499|ref|YP_501677.1| - 6.7e-12 45.0 21.7 1.8e-10 40.3 8.1 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|88601499|ref|YP_501677.1| - 0.00013 21.0 28.6 0.0038 16.1 28.6 2.1 1 1 0 1 1 1 1 MFS_1 like family MFS_2 PF13347.6 gi|88601499|ref|YP_501677.1| - 0.074 11.6 33.3 0.63 8.5 8.7 3.2 1 1 2 3 3 3 0 MFS/sugar transport protein DUF4131 PF13567.6 gi|88601499|ref|YP_501677.1| - 8.4 6.0 13.2 1.5 8.5 0.1 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) Peripla_BP_2 PF01497.18 gi|88601500|ref|YP_501678.1| - 8.4e-24 84.4 0.1 1.2e-23 83.9 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|88601500|ref|YP_501678.1| - 0.005 17.0 4.6 0.005 17.0 4.6 1.9 2 0 0 2 2 2 1 Dockerin type I domain FecCD PF01032.18 gi|88601501|ref|YP_501679.1| - 1.9e-94 316.2 38.9 2.3e-94 315.9 38.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|88601502|ref|YP_501680.1| - 5.9e-34 117.5 0.0 8e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601502|ref|YP_501680.1| - 1.3e-10 41.7 1.4 5e-06 26.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601502|ref|YP_501680.1| - 5e-08 32.7 0.7 8.6e-07 28.6 0.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601502|ref|YP_501680.1| - 1.3e-06 28.0 0.2 2.8e-06 27.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601502|ref|YP_501680.1| - 3.6e-05 24.2 0.0 5.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601502|ref|YP_501680.1| - 3.8e-05 24.3 0.7 5.8e-05 23.7 0.7 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|88601502|ref|YP_501680.1| - 0.00015 21.6 0.0 0.00019 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|88601502|ref|YP_501680.1| - 0.033 13.2 0.0 0.056 12.4 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|88601502|ref|YP_501680.1| - 0.034 13.9 0.0 0.078 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|88601502|ref|YP_501680.1| - 0.053 13.9 0.1 0.33 11.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|88601502|ref|YP_501680.1| - 0.067 12.6 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|88601502|ref|YP_501680.1| - 0.099 12.6 0.1 2.9 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|88601502|ref|YP_501680.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|88601502|ref|YP_501680.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|88601502|ref|YP_501680.1| - 0.17 12.2 1.8 1 9.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|88601503|ref|YP_501681.1| - 2.5e-31 109.0 0.0 5.2e-31 108.0 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|88601503|ref|YP_501681.1| - 2.6e-30 106.0 5.9 3.7e-30 105.5 5.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|88601503|ref|YP_501681.1| - 3.5e-05 23.3 0.0 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601503|ref|YP_501681.1| - 0.00017 21.3 0.0 0.0004 20.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601503|ref|YP_501681.1| - 0.00037 20.9 0.0 0.00086 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88601503|ref|YP_501681.1| - 0.0018 18.2 0.0 0.0031 17.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|88601503|ref|YP_501681.1| - 0.013 15.4 0.7 0.83 9.4 0.0 2.3 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|88601503|ref|YP_501681.1| - 0.026 14.6 0.0 0.45 10.6 0.0 2.5 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|88601503|ref|YP_501681.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88601503|ref|YP_501681.1| - 0.081 13.2 0.0 0.26 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain CHDNT PF08073.12 gi|88601503|ref|YP_501681.1| - 0.11 12.5 0.0 2.3 8.2 0.0 2.4 2 0 0 2 2 2 0 CHDNT (NUC034) domain AAA_23 PF13476.6 gi|88601503|ref|YP_501681.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|88601503|ref|YP_501681.1| - 0.18 10.6 0.1 0.34 9.6 0.0 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|88601504|ref|YP_501682.1| - 6.2e-28 98.0 0.0 1.1e-27 97.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|88601504|ref|YP_501682.1| - 1e-10 41.7 4.6 2.7e-10 40.4 4.6 1.6 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|88601504|ref|YP_501682.1| - 1.1e-06 28.3 0.0 1.3e-05 24.8 0.0 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|88601504|ref|YP_501682.1| - 0.01 15.1 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|88601504|ref|YP_501682.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|88601504|ref|YP_501682.1| - 0.022 15.1 0.0 0.047 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|88601504|ref|YP_501682.1| - 0.062 13.7 0.0 0.24 11.8 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 gi|88601504|ref|YP_501682.1| - 0.062 13.0 1.0 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.17 gi|88601504|ref|YP_501682.1| - 0.085 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain TsaE PF02367.17 gi|88601504|ref|YP_501682.1| - 0.13 12.2 0.3 0.5 10.4 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|88601504|ref|YP_501682.1| - 0.14 12.7 0.0 0.22 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|88601505|ref|YP_501683.1| - 1e-34 120.0 0.0 1.8e-34 119.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|88601505|ref|YP_501683.1| - 6.7e-22 78.4 2.2 9.1e-22 78.0 2.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|88601505|ref|YP_501683.1| - 5.4e-07 29.3 0.1 4.1e-05 23.1 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601505|ref|YP_501683.1| - 5.2e-05 22.9 0.0 0.0011 18.6 0.0 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|88601505|ref|YP_501683.1| - 0.00012 22.0 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|88601505|ref|YP_501683.1| - 0.00013 22.4 0.0 0.00066 20.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|88601505|ref|YP_501683.1| - 0.00073 19.4 0.0 0.39 10.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 gi|88601505|ref|YP_501683.1| - 0.0084 14.9 0.0 0.04 12.7 0.0 1.9 1 1 0 1 1 1 1 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|88601505|ref|YP_501683.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|88601505|ref|YP_501683.1| - 0.048 13.8 0.0 0.23 11.5 0.0 2.2 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|88601505|ref|YP_501683.1| - 0.051 14.1 0.0 0.099 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88601505|ref|YP_501683.1| - 0.064 13.5 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|88601505|ref|YP_501683.1| - 0.15 11.3 0.1 1.1 8.5 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin ABC_tran PF00005.27 gi|88601506|ref|YP_501684.1| - 2.1e-33 115.8 0.0 3.2e-33 115.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|88601506|ref|YP_501684.1| - 3.2e-21 76.2 6.8 5.9e-21 75.3 6.8 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|88601506|ref|YP_501684.1| - 1.9e-06 27.5 0.0 2.4e-05 23.9 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|88601506|ref|YP_501684.1| - 0.0028 16.9 0.0 0.0061 15.9 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin ABC_ATPase PF09818.9 gi|88601506|ref|YP_501684.1| - 0.0071 15.2 1.9 0.013 14.3 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|88601506|ref|YP_501684.1| - 0.051 13.3 0.1 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|88601506|ref|YP_501684.1| - 0.085 13.1 0.5 0.69 10.2 0.5 2.2 1 1 0 1 1 1 0 AAA domain TcpE PF12648.7 gi|88601506|ref|YP_501684.1| - 1.8 9.1 8.7 0.25 11.9 2.7 2.5 3 0 0 3 3 3 0 TcpE family PrgI PF12666.7 gi|88601506|ref|YP_501684.1| - 9.6 7.0 13.8 2.8 8.7 2.2 3.3 3 0 0 3 3 3 0 PrgI family protein ABC_tran PF00005.27 gi|88601507|ref|YP_501685.1| - 3.7e-23 82.5 0.1 5e-23 82.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|88601507|ref|YP_501685.1| - 3.8e-15 56.2 1.4 7.2e-15 55.3 1.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|88601507|ref|YP_501685.1| - 1.5e-05 24.6 0.0 2.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|88601507|ref|YP_501685.1| - 0.0055 16.5 0.1 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|88601507|ref|YP_501685.1| - 0.02 14.4 0.1 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|88601507|ref|YP_501685.1| - 0.051 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_21 PF13304.6 gi|88601507|ref|YP_501685.1| - 0.1 12.3 0.2 0.54 10.0 0.0 1.9 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|88601507|ref|YP_501685.1| - 0.21 11.9 0.3 1 9.6 0.3 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|88601508|ref|YP_501686.1| - 1.1e-32 113.4 0.0 1.5e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601508|ref|YP_501686.1| - 1.8e-06 28.0 4.8 0.0015 18.4 0.9 2.7 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601508|ref|YP_501686.1| - 0.00013 21.5 0.0 0.00028 20.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|88601508|ref|YP_501686.1| - 0.0031 17.8 0.3 0.016 15.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88601508|ref|YP_501686.1| - 0.0096 16.3 0.0 0.017 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|88601508|ref|YP_501686.1| - 0.016 14.9 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|88601508|ref|YP_501686.1| - 0.041 14.3 0.2 0.41 11.1 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|88601508|ref|YP_501686.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Methyltransf_11 PF08241.12 gi|88601509|ref|YP_501687.1| - 8.1e-27 93.7 0.0 1.6e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601509|ref|YP_501687.1| - 2.4e-25 89.1 0.0 4.1e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601509|ref|YP_501687.1| - 3.3e-25 88.7 0.0 5.8e-25 87.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601509|ref|YP_501687.1| - 5.3e-22 78.3 0.0 8.5e-22 77.6 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|88601509|ref|YP_501687.1| - 2.7e-19 69.6 0.0 4.3e-19 68.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601509|ref|YP_501687.1| - 9.8e-16 58.3 0.0 1.6e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|88601509|ref|YP_501687.1| - 1.8e-08 33.8 0.0 2.5e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 gi|88601509|ref|YP_501687.1| - 2.8e-07 30.2 0.0 4.2e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|88601509|ref|YP_501687.1| - 3.1e-07 30.0 0.0 5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|88601509|ref|YP_501687.1| - 1.3e-06 28.1 0.0 2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|88601509|ref|YP_501687.1| - 1.8e-06 27.7 0.0 2.4e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|88601509|ref|YP_501687.1| - 1.2e-05 25.4 0.0 2.2e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|88601509|ref|YP_501687.1| - 0.00018 20.9 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|88601509|ref|YP_501687.1| - 0.00046 20.2 0.0 0.00072 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88601509|ref|YP_501687.1| - 0.00059 19.3 0.0 0.00077 18.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.11 gi|88601509|ref|YP_501687.1| - 0.00096 18.9 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|88601509|ref|YP_501687.1| - 0.0068 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|88601509|ref|YP_501687.1| - 0.0073 16.2 0.0 0.049 13.5 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|88601509|ref|YP_501687.1| - 0.0092 15.8 0.0 0.02 14.7 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AdoMet_MTase PF07757.13 gi|88601509|ref|YP_501687.1| - 0.012 16.0 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase CheR PF01739.18 gi|88601509|ref|YP_501687.1| - 0.018 14.5 0.0 0.12 11.9 0.0 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.16 gi|88601509|ref|YP_501687.1| - 0.02 13.5 0.0 0.029 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_4 PF02390.17 gi|88601509|ref|YP_501687.1| - 0.03 13.8 0.1 0.29 10.6 0.0 2.3 2 1 0 3 3 3 0 Putative methyltransferase RrnaAD PF00398.20 gi|88601509|ref|YP_501687.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|88601509|ref|YP_501687.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) FtsJ PF01728.19 gi|88601509|ref|YP_501687.1| - 0.17 12.0 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase SBP_bac_5 PF00496.22 gi|88601510|ref|YP_501688.1| - 4.5e-84 282.6 4.4 5.9e-84 282.2 4.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|88601511|ref|YP_501689.1| - 1.7e-35 122.4 18.7 1.7e-35 122.4 18.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|88601512|ref|YP_501690.1| - 3.5e-25 88.8 9.9 3.5e-25 88.8 9.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|88601512|ref|YP_501690.1| - 0.0034 17.3 0.4 0.0034 17.3 0.4 3.2 2 1 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Methyltransf_11 PF08241.12 gi|88601513|ref|YP_501691.1| - 1.5e-23 83.3 0.0 2.8e-23 82.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601513|ref|YP_501691.1| - 6.4e-23 81.3 0.0 1.1e-22 80.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601513|ref|YP_501691.1| - 1.5e-20 73.6 0.0 2e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601513|ref|YP_501691.1| - 5.6e-18 65.3 0.0 8e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601513|ref|YP_501691.1| - 6.6e-14 51.8 0.0 1.6e-13 50.5 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|88601513|ref|YP_501691.1| - 5.4e-12 46.3 0.0 1e-11 45.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88601513|ref|YP_501691.1| - 5.7e-07 29.2 0.0 1.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|88601513|ref|YP_501691.1| - 2.2e-06 27.3 0.0 4e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|88601513|ref|YP_501691.1| - 0.001 19.1 0.2 0.0018 18.3 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|88601513|ref|YP_501691.1| - 0.001 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.15 gi|88601513|ref|YP_501691.1| - 0.0054 16.1 0.0 0.013 14.8 0.0 1.6 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|88601513|ref|YP_501691.1| - 0.0054 16.4 0.0 0.0081 15.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|88601513|ref|YP_501691.1| - 0.0058 16.1 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MRP-S27 PF10037.9 gi|88601513|ref|YP_501691.1| - 0.016 14.1 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 Methyltransf_18 PF12847.7 gi|88601513|ref|YP_501691.1| - 0.032 14.2 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain PCMT PF01135.19 gi|88601513|ref|YP_501691.1| - 0.035 13.8 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|88601513|ref|YP_501691.1| - 0.037 13.1 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|88601513|ref|YP_501691.1| - 0.066 12.8 0.0 0.19 11.3 0.0 1.8 3 0 0 3 3 3 0 RNA cap guanine-N2 methyltransferase Fer4_16 PF13484.6 gi|88601514|ref|YP_501692.1| - 3.5e-09 37.5 3.2 7.1e-09 36.5 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|88601514|ref|YP_501692.1| - 8.6e-09 35.9 5.5 1.7e-08 34.9 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88601514|ref|YP_501692.1| - 1.9e-06 27.5 13.2 0.00046 19.9 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88601514|ref|YP_501692.1| - 2.5e-06 27.6 2.5 0.00082 19.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88601514|ref|YP_501692.1| - 3.3e-05 23.9 8.3 0.00018 21.5 8.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88601514|ref|YP_501692.1| - 7.3e-05 22.7 8.9 0.015 15.3 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88601514|ref|YP_501692.1| - 0.00022 21.9 12.3 0.023 15.6 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88601514|ref|YP_501692.1| - 0.0013 18.7 12.7 0.17 12.0 4.2 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88601514|ref|YP_501692.1| - 0.002 18.2 8.1 0.024 14.8 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88601514|ref|YP_501692.1| - 0.0038 17.6 10.2 0.043 14.3 9.5 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88601514|ref|YP_501692.1| - 0.005 17.0 3.8 0.6 10.3 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88601514|ref|YP_501692.1| - 0.0074 16.7 10.0 0.44 11.2 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88601514|ref|YP_501692.1| - 0.0077 16.8 7.9 0.039 14.5 7.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain MazE_antitoxin PF04014.18 gi|88601515|ref|YP_501693.1| - 0.044 13.7 1.5 0.13 12.3 0.1 2.3 2 1 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin BPD_transp_1 PF00528.22 gi|88601516|ref|YP_501694.1| - 1.9e-24 86.4 16.1 3.7e-24 85.5 12.2 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|88601516|ref|YP_501694.1| - 3.2e-12 46.2 0.4 3.2e-12 46.2 0.4 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|88601517|ref|YP_501695.1| - 4.9e-41 140.5 11.0 4.9e-41 140.5 11.0 2.2 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|88601518|ref|YP_501696.1| - 4.2e-28 98.6 0.0 6.1e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601518|ref|YP_501696.1| - 6.8e-10 39.2 1.9 2.5e-06 27.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|88601518|ref|YP_501696.1| - 4.9e-06 26.9 0.6 4.4e-05 23.8 0.6 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88601518|ref|YP_501696.1| - 4.1e-05 23.1 0.0 0.024 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601518|ref|YP_501696.1| - 0.0012 18.6 0.1 0.0024 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601518|ref|YP_501696.1| - 0.0065 16.9 0.0 0.011 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88601518|ref|YP_501696.1| - 0.0077 16.2 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|88601518|ref|YP_501696.1| - 0.022 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain oligo_HPY PF08352.12 gi|88601518|ref|YP_501696.1| - 0.024 15.2 2.8 0.25 11.9 2.8 2.2 1 1 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region AAA_5 PF07728.14 gi|88601518|ref|YP_501696.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|88601518|ref|YP_501696.1| - 0.14 12.6 0.1 0.21 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|88601518|ref|YP_501696.1| - 0.15 12.6 0.0 0.53 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|88601519|ref|YP_501697.1| - 1.8e-20 73.9 0.0 2.3e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|88601519|ref|YP_501697.1| - 5.1e-12 46.1 0.2 8.8e-12 45.4 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|88601519|ref|YP_501697.1| - 0.0059 16.1 0.1 1.1 8.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601519|ref|YP_501697.1| - 0.01 15.5 0.1 0.022 14.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|88601519|ref|YP_501697.1| - 0.017 15.0 0.3 1.2 8.9 0.3 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|88601519|ref|YP_501697.1| - 0.029 14.6 0.0 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|88601519|ref|YP_501697.1| - 0.069 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|88601519|ref|YP_501697.1| - 0.085 13.2 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|88601519|ref|YP_501697.1| - 0.13 11.6 0.1 0.23 10.8 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|88601519|ref|YP_501697.1| - 0.21 10.7 1.3 0.99 8.5 0.2 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain Methyltransf_25 PF13649.6 gi|88601520|ref|YP_501698.1| - 2.2e-12 47.5 0.0 6.7e-12 46.0 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601520|ref|YP_501698.1| - 1.7e-10 41.4 0.0 5.9e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601520|ref|YP_501698.1| - 9.5e-10 38.5 0.0 1.3e-09 38.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601520|ref|YP_501698.1| - 1.1e-08 35.0 0.0 1.7e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601520|ref|YP_501698.1| - 1.2e-07 32.4 0.0 3.7e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|88601520|ref|YP_501698.1| - 1.7e-06 27.7 0.0 7.6e-06 25.6 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.20 gi|88601520|ref|YP_501698.1| - 3e-06 26.5 0.0 4.3e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|88601520|ref|YP_501698.1| - 8.1e-06 25.3 0.0 4.5e-05 22.8 0.0 2.0 1 1 0 2 2 2 1 rRNA small subunit methyltransferase G TehB PF03848.14 gi|88601520|ref|YP_501698.1| - 0.00011 21.6 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|88601520|ref|YP_501698.1| - 0.00013 21.4 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|88601520|ref|YP_501698.1| - 0.00034 20.3 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.10 gi|88601520|ref|YP_501698.1| - 0.00074 19.1 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|88601520|ref|YP_501698.1| - 0.0031 17.3 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase DREV PF05219.12 gi|88601520|ref|YP_501698.1| - 0.0031 16.7 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Cons_hypoth95 PF03602.15 gi|88601520|ref|YP_501698.1| - 0.004 16.8 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.17 gi|88601520|ref|YP_501698.1| - 0.0042 16.6 0.0 0.0063 16.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.13 gi|88601520|ref|YP_501698.1| - 0.0049 16.3 0.0 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|88601520|ref|YP_501698.1| - 0.012 15.3 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Lysine_decarbox PF03641.14 gi|88601520|ref|YP_501698.1| - 0.02 15.0 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Possible lysine decarboxylase Methyltr_RsmB-F PF01189.17 gi|88601520|ref|YP_501698.1| - 0.046 13.3 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|88601520|ref|YP_501698.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|88601520|ref|YP_501698.1| - 0.076 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601521|ref|YP_501699.1| - 4.6e-09 36.9 0.0 8.2e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601521|ref|YP_501699.1| - 1.7e-07 31.2 0.0 2.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601521|ref|YP_501699.1| - 7.7e-07 29.7 0.0 1.6e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|88601521|ref|YP_501699.1| - 2.7e-06 27.2 0.0 4.5e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|88601521|ref|YP_501699.1| - 0.00015 21.7 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601521|ref|YP_501699.1| - 0.00016 22.3 0.0 0.00037 21.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|88601521|ref|YP_501699.1| - 0.0031 17.3 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF938) RrnaAD PF00398.20 gi|88601521|ref|YP_501699.1| - 0.0064 15.6 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|88601521|ref|YP_501699.1| - 0.0077 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_16 PF10294.9 gi|88601521|ref|YP_501699.1| - 0.0088 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|88601521|ref|YP_501699.1| - 0.053 12.5 0.0 0.072 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|88601521|ref|YP_501699.1| - 0.078 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|88601521|ref|YP_501699.1| - 0.078 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|88601522|ref|YP_501700.1| - 8.3e-28 96.9 0.0 1.3e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601522|ref|YP_501700.1| - 4.7e-24 84.9 0.0 7.3e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601522|ref|YP_501700.1| - 6.6e-20 71.4 0.0 8.2e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601522|ref|YP_501700.1| - 4e-18 65.6 0.0 6e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|88601522|ref|YP_501700.1| - 1.8e-14 53.9 0.0 2.3e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601522|ref|YP_501700.1| - 1.6e-11 44.8 0.0 2.7e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88601522|ref|YP_501700.1| - 2.1e-06 27.4 0.0 3.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|88601522|ref|YP_501700.1| - 0.00029 20.4 0.0 0.00036 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|88601522|ref|YP_501700.1| - 0.0021 17.5 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|88601522|ref|YP_501700.1| - 0.0037 16.9 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW ADH_zinc_N PF00107.26 gi|88601522|ref|YP_501700.1| - 0.0088 16.0 0.0 0.033 14.2 0.0 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DREV PF05219.12 gi|88601522|ref|YP_501700.1| - 0.0094 15.1 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_15 PF09445.10 gi|88601522|ref|YP_501700.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|88601522|ref|YP_501700.1| - 0.023 14.6 0.0 0.036 13.9 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase NPM1-C PF16276.5 gi|88601522|ref|YP_501700.1| - 0.029 14.3 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Nucleophosmin C-terminal domain UPF0020 PF01170.18 gi|88601522|ref|YP_501700.1| - 0.062 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|88601522|ref|YP_501700.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|88601522|ref|YP_501700.1| - 0.079 12.3 0.0 0.19 11.0 0.0 1.6 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G NodS PF05401.11 gi|88601522|ref|YP_501700.1| - 0.1 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|88601522|ref|YP_501700.1| - 0.15 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|88601522|ref|YP_501700.1| - 0.21 11.3 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SBP_bac_5 PF00496.22 gi|88601523|ref|YP_501701.1| - 9e-98 327.7 0.3 1.2e-97 327.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|88601524|ref|YP_501702.1| - 1.9e-36 125.5 11.1 1.9e-36 125.5 11.1 2.2 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|88601525|ref|YP_501703.1| - 2.1e-27 96.1 9.5 2.1e-27 96.1 9.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|88601525|ref|YP_501703.1| - 5.2e-08 32.7 0.1 5.2e-08 32.7 0.1 3.8 4 0 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C DUF2207 PF09972.9 gi|88601525|ref|YP_501703.1| - 0.05 12.4 2.7 0.093 11.5 2.7 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) 7tm_3 PF00003.22 gi|88601525|ref|YP_501703.1| - 0.11 12.3 4.4 1 9.0 4.1 2.1 1 1 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR ABC_tran PF00005.27 gi|88601526|ref|YP_501704.1| - 1.2e-27 97.1 0.0 1.7e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601526|ref|YP_501704.1| - 5e-10 39.7 0.0 0.00078 19.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601526|ref|YP_501704.1| - 1.5e-06 27.8 0.0 5.9e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|88601526|ref|YP_501704.1| - 0.00065 20.1 0.0 0.85 10.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88601526|ref|YP_501704.1| - 0.0029 17.9 0.5 0.018 15.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|88601526|ref|YP_501704.1| - 0.012 15.5 0.1 0.024 14.5 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|88601526|ref|YP_501704.1| - 0.022 14.5 0.0 0.045 13.5 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|88601526|ref|YP_501704.1| - 0.045 14.3 0.0 0.18 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|88601526|ref|YP_501704.1| - 0.058 13.1 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|88601526|ref|YP_501704.1| - 0.068 12.9 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|88601526|ref|YP_501704.1| - 0.079 13.3 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|88601526|ref|YP_501704.1| - 0.086 13.3 0.5 0.16 12.5 0.5 1.3 1 0 0 1 1 1 0 AAA domain DUF4392 PF14336.6 gi|88601526|ref|YP_501704.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) TniB PF05621.11 gi|88601526|ref|YP_501704.1| - 0.13 11.7 0.2 0.56 9.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein ATP-synt_ab PF00006.25 gi|88601526|ref|YP_501704.1| - 0.13 11.9 0.1 0.15 11.7 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.27 gi|88601527|ref|YP_501705.1| - 1.3e-21 77.6 0.1 1.7e-21 77.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|88601527|ref|YP_501705.1| - 1.9e-14 53.9 0.1 3.4e-14 53.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|88601527|ref|YP_501705.1| - 0.0051 16.7 1.0 1.2 8.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601527|ref|YP_501705.1| - 0.0054 16.4 0.1 0.0093 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|88601527|ref|YP_501705.1| - 0.0062 16.8 0.1 0.016 15.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|88601527|ref|YP_501705.1| - 0.019 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|88601527|ref|YP_501705.1| - 0.02 14.2 0.1 2 7.7 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|88601527|ref|YP_501705.1| - 0.029 13.8 0.2 0.058 12.8 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|88601527|ref|YP_501705.1| - 0.086 13.2 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|88601528|ref|YP_501706.1| - 8.7e-32 110.4 11.5 8.7e-32 110.4 11.5 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|88601528|ref|YP_501706.1| - 0.00075 19.4 0.0 0.00075 19.4 0.0 3.1 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|88601529|ref|YP_501707.1| - 3.6e-41 140.9 19.7 3.6e-41 140.9 19.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.12 gi|88601530|ref|YP_501708.1| - 3.1e-26 91.9 0.0 5.4e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601530|ref|YP_501708.1| - 9.1e-25 87.2 0.0 6.1e-24 84.6 0.0 2.2 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601530|ref|YP_501708.1| - 1.5e-21 76.8 0.0 2.1e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601530|ref|YP_501708.1| - 5.4e-20 71.9 0.0 8.8e-20 71.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601530|ref|YP_501708.1| - 6.7e-20 71.4 0.0 7.7e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|88601530|ref|YP_501708.1| - 2.4e-14 53.9 0.0 5.9e-14 52.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|88601530|ref|YP_501708.1| - 2.8e-07 30.3 0.0 4.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|88601530|ref|YP_501708.1| - 3.7e-06 26.7 0.0 6.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|88601530|ref|YP_501708.1| - 0.0001 22.4 0.0 0.00017 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|88601530|ref|YP_501708.1| - 0.00027 20.1 0.0 0.00043 19.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 gi|88601530|ref|YP_501708.1| - 0.0004 19.8 0.0 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|88601530|ref|YP_501708.1| - 0.00089 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 gi|88601530|ref|YP_501708.1| - 0.0011 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|88601530|ref|YP_501708.1| - 0.0011 18.7 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|88601530|ref|YP_501708.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|88601530|ref|YP_501708.1| - 0.0016 17.9 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|88601530|ref|YP_501708.1| - 0.0029 17.4 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase TPMT PF05724.11 gi|88601530|ref|YP_501708.1| - 0.0057 16.3 0.0 0.008 15.9 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) AdoMet_MTase PF07757.13 gi|88601530|ref|YP_501708.1| - 0.0064 16.8 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase RrnaAD PF00398.20 gi|88601530|ref|YP_501708.1| - 0.0068 15.5 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|88601530|ref|YP_501708.1| - 0.012 15.0 0.1 0.02 14.2 0.0 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|88601530|ref|YP_501708.1| - 0.015 13.9 0.0 0.028 13.0 0.0 1.4 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|88601530|ref|YP_501708.1| - 0.055 13.3 0.0 0.32 10.8 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase Mur_ligase PF01225.25 gi|88601530|ref|YP_501708.1| - 0.081 13.3 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain SBP_bac_5 PF00496.22 gi|88601531|ref|YP_501709.1| - 2.7e-84 283.3 1.7 3.2e-84 283.1 1.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF5505 PF17610.2 gi|88601531|ref|YP_501709.1| - 0.19 11.7 0.1 19 5.2 0.0 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5505) Peripla_BP_2 PF01497.18 gi|88601532|ref|YP_501710.1| - 2.1e-19 70.1 0.0 2.8e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|88601533|ref|YP_501711.1| - 5.1e-91 304.9 32.5 6.2e-91 304.6 32.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|88601533|ref|YP_501711.1| - 7.2e-05 22.4 19.9 7.2e-05 22.4 19.9 1.9 2 1 0 2 2 2 1 ABC 3 transport family Sigma_reg_N PF13800.6 gi|88601533|ref|YP_501711.1| - 4.4 7.7 16.0 1.1 9.7 0.3 3.7 4 0 0 4 4 4 0 Sigma factor regulator N-terminal ABC_tran PF00005.27 gi|88601534|ref|YP_501712.1| - 5.6e-31 107.9 0.0 7.1e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601534|ref|YP_501712.1| - 2.9e-10 40.4 2.5 0.00031 20.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|88601534|ref|YP_501712.1| - 6e-07 30.2 0.3 9.8e-07 29.5 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601534|ref|YP_501712.1| - 2.8e-05 23.8 0.0 0.00019 21.1 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|88601534|ref|YP_501712.1| - 5.3e-05 23.5 1.3 0.00043 20.6 1.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88601534|ref|YP_501712.1| - 0.00014 21.4 0.3 0.00069 19.1 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|88601534|ref|YP_501712.1| - 0.00057 19.8 0.1 0.0054 16.7 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|88601534|ref|YP_501712.1| - 0.00081 19.2 0.2 0.004 16.9 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|88601534|ref|YP_501712.1| - 0.00087 19.7 0.0 0.0011 19.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|88601534|ref|YP_501712.1| - 0.0028 17.0 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|88601534|ref|YP_501712.1| - 0.0041 16.8 0.0 0.0075 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|88601534|ref|YP_501712.1| - 0.0067 16.5 0.2 0.1 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain HSM3_N PF18795.1 gi|88601534|ref|YP_501712.1| - 0.013 15.0 0.4 0.019 14.4 0.4 1.4 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain MeaB PF03308.16 gi|88601534|ref|YP_501712.1| - 0.014 14.4 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|88601534|ref|YP_501712.1| - 0.017 15.1 0.8 0.75 9.7 0.8 2.4 1 1 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|88601534|ref|YP_501712.1| - 0.022 13.9 0.5 0.31 10.2 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|88601534|ref|YP_501712.1| - 0.025 13.4 0.1 5.8 5.6 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 gi|88601534|ref|YP_501712.1| - 0.033 14.5 0.9 0.12 12.7 0.7 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88601534|ref|YP_501712.1| - 0.037 13.9 0.9 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|88601534|ref|YP_501712.1| - 0.041 12.5 0.2 5.1 5.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|88601534|ref|YP_501712.1| - 0.043 13.5 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|88601534|ref|YP_501712.1| - 0.05 13.5 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|88601534|ref|YP_501712.1| - 0.053 13.2 0.3 0.24 11.0 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|88601534|ref|YP_501712.1| - 0.053 13.7 0.0 0.12 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|88601534|ref|YP_501712.1| - 0.056 13.0 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|88601534|ref|YP_501712.1| - 0.059 13.9 0.3 0.15 12.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|88601534|ref|YP_501712.1| - 0.097 12.3 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|88601534|ref|YP_501712.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|88601534|ref|YP_501712.1| - 0.16 12.2 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|88601534|ref|YP_501712.1| - 0.22 12.0 0.9 0.73 10.3 0.9 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|88601535|ref|YP_501713.1| - 4e-36 124.6 0.0 5.7e-35 120.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|88601535|ref|YP_501713.1| - 4e-11 43.3 0.7 4.6e-06 26.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88601535|ref|YP_501713.1| - 1.8e-05 25.4 0.1 3.5e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|88601535|ref|YP_501713.1| - 2.3e-05 24.3 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|88601535|ref|YP_501713.1| - 3.2e-05 24.5 0.0 5.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88601535|ref|YP_501713.1| - 0.0015 18.0 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601535|ref|YP_501713.1| - 0.0018 18.0 0.2 0.0037 17.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|88601535|ref|YP_501713.1| - 0.0033 17.1 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|88601535|ref|YP_501713.1| - 0.0039 17.6 0.0 0.051 14.0 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|88601535|ref|YP_501713.1| - 0.011 15.7 0.2 0.034 14.1 0.2 1.8 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|88601535|ref|YP_501713.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|88601535|ref|YP_501713.1| - 0.019 14.7 0.2 0.39 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|88601535|ref|YP_501713.1| - 0.079 12.3 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.24 gi|88601536|ref|YP_501714.1| - 7e-41 139.9 24.5 1e-40 139.4 24.5 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88601536|ref|YP_501714.1| - 6.9e-16 58.3 31.1 6.9e-16 58.3 31.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88601536|ref|YP_501714.1| - 0.00095 18.5 20.7 0.0052 16.1 20.1 1.9 1 1 1 2 2 2 2 ABC-2 family transporter protein Flavin_Reduct PF01613.18 gi|88601537|ref|YP_501715.1| - 2.8e-19 69.7 0.0 3.2e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|88601537|ref|YP_501715.1| - 0.00039 20.2 0.0 0.00065 19.5 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF447) Methyltransf_25 PF13649.6 gi|88601538|ref|YP_501716.1| - 7.9e-14 52.1 0.0 1.6e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601538|ref|YP_501716.1| - 2.4e-09 37.2 0.0 3.8e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601538|ref|YP_501716.1| - 7.9e-09 36.2 0.0 1.9e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601538|ref|YP_501716.1| - 1.8e-08 34.9 0.0 3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601538|ref|YP_501716.1| - 3e-07 30.4 0.0 4.9e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|88601538|ref|YP_501716.1| - 4.8e-07 29.4 0.0 1.5e-06 27.8 0.0 1.8 1 1 1 2 2 2 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|88601538|ref|YP_501716.1| - 5.3e-06 25.7 0.0 8.2e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|88601538|ref|YP_501716.1| - 1.6e-05 24.5 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|88601538|ref|YP_501716.1| - 4.1e-05 23.0 0.0 5.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|88601538|ref|YP_501716.1| - 5e-05 22.9 0.0 7.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DUF43 PF01861.16 gi|88601538|ref|YP_501716.1| - 6.4e-05 22.3 0.1 0.0001 21.6 0.1 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain CMAS PF02353.20 gi|88601538|ref|YP_501716.1| - 0.00027 20.3 0.0 0.00042 19.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|88601538|ref|YP_501716.1| - 0.00041 20.4 0.0 0.00063 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|88601538|ref|YP_501716.1| - 0.00044 19.4 0.0 0.00073 18.7 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.7 gi|88601538|ref|YP_501716.1| - 0.001 19.0 0.0 0.0036 17.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|88601538|ref|YP_501716.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase FtsJ PF01728.19 gi|88601538|ref|YP_501716.1| - 0.0018 18.4 0.0 0.0028 17.8 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.15 gi|88601538|ref|YP_501716.1| - 0.0063 15.8 0.0 0.0084 15.5 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|88601538|ref|YP_501716.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) AlaDh_PNT_C PF01262.21 gi|88601538|ref|YP_501716.1| - 0.024 13.9 0.0 0.036 13.3 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Met_10 PF02475.16 gi|88601538|ref|YP_501716.1| - 0.033 14.0 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MetW PF07021.12 gi|88601538|ref|YP_501716.1| - 0.041 13.5 0.0 0.47 10.0 0.0 2.2 2 1 0 2 2 2 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|88601538|ref|YP_501716.1| - 0.043 13.4 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DDE_Tnp_1 PF01609.21 gi|88601539|ref|YP_501717.1| - 3.7e-24 85.6 0.0 7.9e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain CorA PF01544.18 gi|88601539|ref|YP_501717.1| - 0.033 13.5 0.1 0.052 12.9 0.1 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DDE_Tnp_1_3 PF13612.6 gi|88601539|ref|YP_501717.1| - 0.04 13.9 0.3 0.31 11.0 0.1 2.4 3 0 0 3 3 3 0 Transposase DDE domain DUF1188 PF06690.11 gi|88601540|ref|YP_501718.1| - 1.3e-33 116.6 0.1 1.4e-33 116.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) BcrAD_BadFG PF01869.20 gi|88601540|ref|YP_501718.1| - 0.18 11.3 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family NIF3 PF01784.18 gi|88601541|ref|YP_501719.1| - 4.5e-26 92.0 0.0 1.4e-23 83.8 0.0 2.0 1 1 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) CheC PF04509.12 gi|88601541|ref|YP_501719.1| - 0.046 13.6 0.1 0.093 12.7 0.1 1.5 1 0 0 1 1 1 0 CheC-like family ThiF PF00899.21 gi|88601542|ref|YP_501720.1| - 1e-06 28.3 0.1 1.5e-06 27.8 0.1 1.4 1 1 0 1 1 1 1 ThiF family Glyco_transf_29 PF00777.18 gi|88601542|ref|YP_501720.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 29 (sialyltransferase) Arginosuc_synth PF00764.19 gi|88601542|ref|YP_501720.1| - 0.14 11.4 0.0 0.32 10.2 0.0 1.5 2 0 0 2 2 2 0 Arginosuccinate synthase UPF0254 PF06787.11 gi|88601543|ref|YP_501721.1| - 1.1e-65 220.4 0.0 1.2e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) Fibrillarin_2 PF10113.9 gi|88601544|ref|YP_501722.1| - 6.2e-266 882.8 0.0 7e-266 882.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein BATS PF06968.13 gi|88601544|ref|YP_501722.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain Peptidase_S9 PF00326.21 gi|88601545|ref|YP_501723.1| - 0.0094 15.4 0.0 0.046 13.2 0.0 1.9 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF2927 PF11150.8 gi|88601546|ref|YP_501724.1| - 2.2e-05 24.6 0.0 4.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2927) PepSY_2 PF13670.6 gi|88601547|ref|YP_501725.1| - 0.00032 20.6 0.0 0.00084 19.3 0.0 1.7 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain NGP1NT PF08153.12 gi|88601547|ref|YP_501725.1| - 0.0016 18.6 0.0 0.22 11.7 0.0 2.6 2 1 0 2 2 2 2 NGP1NT (NUC091) domain DUF2927 PF11150.8 gi|88601547|ref|YP_501725.1| - 0.0066 16.5 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2927) ABC_tran PF00005.27 gi|88601548|ref|YP_501726.1| - 3.2e-32 111.9 0.0 4.4e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601548|ref|YP_501726.1| - 7.3e-11 42.4 1.0 3.3e-06 27.1 0.4 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601548|ref|YP_501726.1| - 2.3e-07 30.5 0.1 8.9e-07 28.6 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|88601548|ref|YP_501726.1| - 5.8e-06 26.8 0.0 0.0017 18.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|88601548|ref|YP_501726.1| - 4.3e-05 24.1 0.0 0.0015 19.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|88601548|ref|YP_501726.1| - 6.7e-05 22.9 0.1 0.00042 20.3 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|88601548|ref|YP_501726.1| - 0.00019 21.7 0.1 0.00058 20.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88601548|ref|YP_501726.1| - 0.00069 20.0 0.0 0.0016 18.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|88601548|ref|YP_501726.1| - 0.0012 18.6 0.2 0.25 11.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|88601548|ref|YP_501726.1| - 0.0023 17.8 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_13 PF13166.6 gi|88601548|ref|YP_501726.1| - 0.0028 16.4 0.2 0.79 8.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|88601548|ref|YP_501726.1| - 0.0053 16.9 0.0 0.015 15.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601548|ref|YP_501726.1| - 0.015 15.1 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.26 gi|88601548|ref|YP_501726.1| - 0.015 15.0 0.1 0.41 10.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3447 PF11929.8 gi|88601548|ref|YP_501726.1| - 0.018 15.0 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3447) AAA_19 PF13245.6 gi|88601548|ref|YP_501726.1| - 0.023 15.0 0.0 0.038 14.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|88601548|ref|YP_501726.1| - 0.024 15.0 0.0 0.042 14.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin PF02224.18 gi|88601548|ref|YP_501726.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase PRK PF00485.18 gi|88601548|ref|YP_501726.1| - 0.034 13.9 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|88601548|ref|YP_501726.1| - 0.043 13.0 0.1 0.69 9.1 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain DLIC PF05783.11 gi|88601548|ref|YP_501726.1| - 0.061 12.1 0.0 0.081 11.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SbcCD_C PF13558.6 gi|88601548|ref|YP_501726.1| - 0.062 13.6 0.0 0.49 10.7 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|88601548|ref|YP_501726.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|88601548|ref|YP_501726.1| - 0.065 13.1 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|88601548|ref|YP_501726.1| - 0.067 12.9 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|88601548|ref|YP_501726.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|88601548|ref|YP_501726.1| - 0.13 11.2 0.0 0.31 10.0 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|88601549|ref|YP_501727.1| - 1.9e-18 67.3 0.0 2.5e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|88601549|ref|YP_501727.1| - 2.3e-16 60.0 0.2 4.6e-16 59.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|88601549|ref|YP_501727.1| - 0.00013 22.2 0.0 0.00032 21.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88601549|ref|YP_501727.1| - 0.0002 21.8 0.0 0.00048 20.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|88601549|ref|YP_501727.1| - 0.0043 16.5 0.1 0.016 14.7 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|88601549|ref|YP_501727.1| - 0.0063 16.0 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_29 PF13555.6 gi|88601549|ref|YP_501727.1| - 0.0079 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|88601549|ref|YP_501727.1| - 0.0079 15.9 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 gi|88601549|ref|YP_501727.1| - 0.0085 15.8 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|88601549|ref|YP_501727.1| - 0.0097 15.3 0.1 0.04 13.3 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|88601549|ref|YP_501727.1| - 0.019 15.0 0.0 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) tRNA_lig_kinase PF08303.11 gi|88601549|ref|YP_501727.1| - 0.029 14.5 0.0 0.049 13.7 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain AAA_21 PF13304.6 gi|88601549|ref|YP_501727.1| - 0.041 13.7 1.0 1.4 8.7 0.0 2.2 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|88601549|ref|YP_501727.1| - 0.064 12.4 0.1 1.8 7.7 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_15 PF13175.6 gi|88601549|ref|YP_501727.1| - 0.071 12.8 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 gi|88601549|ref|YP_501727.1| - 0.072 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein BioW PF03744.13 gi|88601549|ref|YP_501727.1| - 0.072 12.6 0.0 0.64 9.5 0.0 1.9 1 1 1 2 2 2 0 6-carboxyhexanoate--CoA ligase RNA_helicase PF00910.22 gi|88601549|ref|YP_501727.1| - 0.075 13.4 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|88601549|ref|YP_501727.1| - 0.08 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.9 gi|88601549|ref|YP_501727.1| - 0.084 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|88601549|ref|YP_501727.1| - 0.094 12.6 0.0 3 7.7 0.0 2.3 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 gi|88601549|ref|YP_501727.1| - 0.094 12.6 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|88601550|ref|YP_501728.1| - 3.2e-18 66.1 13.3 3.2e-18 66.1 13.3 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|88601551|ref|YP_501729.1| - 4e-32 111.4 18.1 4e-32 111.4 18.1 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|88601552|ref|YP_501730.1| - 4e-65 220.2 4.3 4e-65 220.2 4.3 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2007 PF09413.10 gi|88601552|ref|YP_501730.1| - 0.084 13.1 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein BPL_LplA_LipB PF03099.19 gi|88601552|ref|YP_501730.1| - 0.098 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DDE_5 PF13546.6 gi|88601553|ref|YP_501731.1| - 2.4e-15 56.6 0.0 7.5e-15 55.0 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88601553|ref|YP_501731.1| - 3e-13 49.9 0.7 4.7e-13 49.3 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88601553|ref|YP_501731.1| - 0.00013 21.4 0.1 0.0002 20.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 HxlR PF01638.17 gi|88601554|ref|YP_501732.1| - 8.8e-22 76.8 0.1 1.2e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|88601554|ref|YP_501732.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88601554|ref|YP_501732.1| - 0.0015 18.3 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|88601554|ref|YP_501732.1| - 0.034 14.1 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Adeno_E4 PF05385.11 gi|88601554|ref|YP_501732.1| - 0.09 12.9 0.5 0.15 12.2 0.5 1.3 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein HTH_34 PF13601.6 gi|88601554|ref|YP_501732.1| - 0.1 12.8 0.0 0.41 10.9 0.0 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1147 PF06615.11 gi|88601554|ref|YP_501732.1| - 0.15 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1147) HTH_20 PF12840.7 gi|88601554|ref|YP_501732.1| - 0.16 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|88601555|ref|YP_501733.1| - 2.5e-31 109.0 0.0 5.9e-31 107.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|88601555|ref|YP_501733.1| - 6.1e-13 49.2 0.7 2e-09 37.7 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88601555|ref|YP_501733.1| - 1.8e-05 25.4 0.1 3.3e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_13 PF13166.6 gi|88601555|ref|YP_501733.1| - 0.00098 17.9 0.2 0.47 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|88601555|ref|YP_501733.1| - 0.001 19.6 2.3 0.0019 18.7 0.9 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|88601555|ref|YP_501733.1| - 0.011 15.1 0.2 0.44 10.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|88601555|ref|YP_501733.1| - 0.034 14.6 2.3 0.32 11.4 1.0 2.7 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|88601555|ref|YP_501733.1| - 0.048 14.1 0.0 0.23 11.8 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain LpxI_N PF17930.1 gi|88601555|ref|YP_501733.1| - 0.05 13.5 0.0 0.37 10.7 0.0 2.3 3 1 0 3 3 3 0 LpxI N-terminal domain AAA_30 PF13604.6 gi|88601555|ref|YP_501733.1| - 0.16 11.7 0.1 0.4 10.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88601555|ref|YP_501733.1| - 0.17 12.2 0.4 11 6.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|88601556|ref|YP_501734.1| - 1.1e-21 77.2 22.3 1.1e-21 77.2 22.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88601556|ref|YP_501734.1| - 9e-11 41.5 34.9 9e-11 41.5 34.9 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88601556|ref|YP_501734.1| - 1.8e-08 34.0 24.8 7e-06 25.5 22.2 2.5 1 1 1 2 2 2 2 ABC-2 family transporter protein CbiA PF01656.23 gi|88601557|ref|YP_501735.1| - 1.6e-11 44.4 0.0 2.6e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|88601557|ref|YP_501735.1| - 2.3e-08 33.8 1.7 2.1e-06 27.4 1.7 2.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|88601557|ref|YP_501735.1| - 3.6e-07 30.3 0.0 8.5e-07 29.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|88601557|ref|YP_501735.1| - 3.3e-06 26.7 0.0 0.0071 15.8 0.0 2.1 1 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|88601557|ref|YP_501735.1| - 6.7e-06 25.9 0.6 0.00017 21.3 0.4 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|88601557|ref|YP_501735.1| - 4.1e-05 23.2 1.3 0.00014 21.4 0.3 2.2 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|88601557|ref|YP_501735.1| - 7.2e-05 22.1 1.7 7.9e-05 22.0 0.2 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|88601557|ref|YP_501735.1| - 8.6e-05 22.3 0.1 0.00087 19.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain TrkA_N PF02254.18 gi|88601557|ref|YP_501735.1| - 0.00015 22.0 0.0 0.05 13.9 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain KTI12 PF08433.10 gi|88601557|ref|YP_501735.1| - 0.00021 20.9 0.0 0.0027 17.2 0.0 2.2 2 0 0 2 2 2 1 Chromatin associated protein KTI12 CLP1_P PF16575.5 gi|88601557|ref|YP_501735.1| - 0.00027 20.8 0.1 0.00097 19.0 0.0 1.9 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|88601557|ref|YP_501735.1| - 0.0003 20.2 0.1 0.0015 17.9 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ APS_kinase PF01583.20 gi|88601557|ref|YP_501735.1| - 0.00065 19.6 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase GTP_EFTU PF00009.27 gi|88601557|ref|YP_501735.1| - 0.0012 18.4 0.2 0.14 11.7 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_10 PF12846.7 gi|88601557|ref|YP_501735.1| - 0.0016 17.5 0.1 0.15 11.0 0.1 3.0 3 0 0 3 3 3 1 AAA-like domain ATP_bind_1 PF03029.17 gi|88601557|ref|YP_501735.1| - 0.0059 16.4 0.5 0.013 15.3 0.1 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|88601557|ref|YP_501735.1| - 0.0098 16.4 0.3 0.014 15.9 0.3 1.6 1 1 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 gi|88601557|ref|YP_501735.1| - 0.012 14.9 0.1 0.023 14.0 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|88601557|ref|YP_501735.1| - 0.016 15.3 0.1 0.62 10.2 0.1 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|88601557|ref|YP_501735.1| - 0.016 15.3 0.1 0.03 14.4 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain MeaB PF03308.16 gi|88601557|ref|YP_501735.1| - 0.02 13.9 0.0 0.035 13.1 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|88601557|ref|YP_501735.1| - 0.021 15.4 0.1 0.032 14.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|88601557|ref|YP_501735.1| - 0.026 13.6 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|88601557|ref|YP_501735.1| - 0.037 14.2 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|88601557|ref|YP_501735.1| - 0.051 14.0 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|88601557|ref|YP_501735.1| - 0.071 12.2 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Thymidylate_kin PF02223.17 gi|88601557|ref|YP_501735.1| - 0.078 12.7 0.1 0.49 10.0 0.1 2.0 2 0 0 2 2 2 0 Thymidylate kinase AAA_25 PF13481.6 gi|88601557|ref|YP_501735.1| - 0.082 12.5 0.1 0.44 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|88601557|ref|YP_501735.1| - 0.1 12.4 1.7 0.12 12.2 0.3 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 gi|88601557|ref|YP_501735.1| - 0.12 11.7 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|88601557|ref|YP_501735.1| - 0.14 12.5 0.0 0.29 11.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|88601557|ref|YP_501735.1| - 0.14 11.9 0.1 0.29 10.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain PRK PF00485.18 gi|88601557|ref|YP_501735.1| - 0.17 11.6 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Methyltransf_25 PF13649.6 gi|88601558|ref|YP_501736.1| - 4.2e-12 46.6 0.0 7.4e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601558|ref|YP_501736.1| - 8.6e-10 38.6 0.0 1.4e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88601558|ref|YP_501736.1| - 2.2e-09 36.8 0.0 3.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|88601558|ref|YP_501736.1| - 1.5e-08 35.2 0.0 2.4e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601558|ref|YP_501736.1| - 3.6e-08 33.9 0.0 6.4e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601558|ref|YP_501736.1| - 4e-08 33.3 0.0 5.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|88601558|ref|YP_501736.1| - 6.6e-06 25.6 0.0 9.3e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|88601558|ref|YP_501736.1| - 6.9e-05 22.5 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|88601558|ref|YP_501736.1| - 0.00062 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|88601558|ref|YP_501736.1| - 0.0039 17.0 0.0 0.0063 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|88601558|ref|YP_501736.1| - 0.005 16.3 0.0 0.058 12.9 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|88601558|ref|YP_501736.1| - 0.0081 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF938 PF06080.12 gi|88601558|ref|YP_501736.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DREV PF05219.12 gi|88601558|ref|YP_501736.1| - 0.012 14.7 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase PrmA PF06325.13 gi|88601558|ref|YP_501736.1| - 0.017 14.6 0.0 0.09 12.2 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|88601558|ref|YP_501736.1| - 0.02 14.7 0.0 0.042 13.6 0.0 1.6 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|88601558|ref|YP_501736.1| - 0.04 13.9 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|88601558|ref|YP_501736.1| - 0.044 13.4 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F MIase PF02426.16 gi|88601558|ref|YP_501736.1| - 0.055 13.6 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Muconolactone delta-isomerase ABC_tran PF00005.27 gi|88601559|ref|YP_501737.1| - 2.9e-30 105.6 0.0 3.8e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601559|ref|YP_501737.1| - 1e-11 45.2 1.8 8.3e-05 22.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|88601559|ref|YP_501737.1| - 8.1e-06 26.3 0.1 2.9e-05 24.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601559|ref|YP_501737.1| - 4.1e-05 24.2 0.0 5.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601559|ref|YP_501737.1| - 0.00021 21.0 0.0 0.0005 19.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88601559|ref|YP_501737.1| - 0.00023 21.0 0.0 0.00043 20.1 0.0 1.4 2 0 0 2 2 1 1 AAA ATPase domain SMC_N PF02463.19 gi|88601559|ref|YP_501737.1| - 0.00027 20.5 0.0 0.077 12.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|88601559|ref|YP_501737.1| - 0.00061 19.7 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|88601559|ref|YP_501737.1| - 0.00082 18.6 0.5 0.013 14.7 0.5 2.5 1 1 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.6 gi|88601559|ref|YP_501737.1| - 0.00096 19.4 0.3 0.0042 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|88601559|ref|YP_501737.1| - 0.0016 18.4 0.0 0.0096 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|88601559|ref|YP_501737.1| - 0.0017 17.3 0.3 0.63 8.8 0.1 2.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.29 gi|88601559|ref|YP_501737.1| - 0.0017 18.8 0.1 0.011 16.1 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|88601559|ref|YP_501737.1| - 0.0028 17.6 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|88601559|ref|YP_501737.1| - 0.0034 17.1 0.0 0.0057 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|88601559|ref|YP_501737.1| - 0.0057 17.0 0.4 0.043 14.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|88601559|ref|YP_501737.1| - 0.0074 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|88601559|ref|YP_501737.1| - 0.0085 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_13 PF13166.6 gi|88601559|ref|YP_501737.1| - 0.01 14.5 0.0 2.6 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|88601559|ref|YP_501737.1| - 0.013 15.4 0.0 0.06 13.3 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|88601559|ref|YP_501737.1| - 0.025 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88601559|ref|YP_501737.1| - 0.026 14.4 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|88601559|ref|YP_501737.1| - 0.033 14.2 0.1 0.31 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|88601559|ref|YP_501737.1| - 0.036 14.2 0.0 0.061 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) SRP54 PF00448.22 gi|88601559|ref|YP_501737.1| - 0.038 13.6 0.1 0.078 12.6 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Pox_A32 PF04665.12 gi|88601559|ref|YP_501737.1| - 0.038 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein T2SSE PF00437.20 gi|88601559|ref|YP_501737.1| - 0.046 12.8 0.0 0.075 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|88601559|ref|YP_501737.1| - 0.069 13.7 0.0 0.15 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|88601559|ref|YP_501737.1| - 0.085 11.7 0.1 10 4.9 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain HSM3_N PF18795.1 gi|88601559|ref|YP_501737.1| - 0.11 11.9 0.2 0.17 11.3 0.2 1.3 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain ATP-synt_ab PF00006.25 gi|88601559|ref|YP_501737.1| - 0.11 12.1 0.0 0.48 10.1 0.0 1.8 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|88601559|ref|YP_501737.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|88601559|ref|YP_501737.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein FecCD PF01032.18 gi|88601560|ref|YP_501738.1| - 1.3e-90 303.6 33.7 1.6e-90 303.3 33.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|88601560|ref|YP_501738.1| - 2.3e-06 27.3 13.6 2.3e-06 27.3 13.6 2.0 1 1 0 1 1 1 1 ABC 3 transport family Ndc1_Nup PF09531.10 gi|88601560|ref|YP_501738.1| - 6.9 5.2 7.2 0.25 10.0 1.2 1.6 2 1 0 2 2 2 0 Nucleoporin protein Ndc1-Nup Peripla_BP_2 PF01497.18 gi|88601561|ref|YP_501739.1| - 1.6e-22 80.2 0.0 2.2e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FmdE PF02663.14 gi|88601562|ref|YP_501740.1| - 4e-21 75.4 0.0 9.9e-21 74.2 0.0 1.7 2 0 0 2 2 2 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon FmdE PF02663.14 gi|88601563|ref|YP_501741.1| - 1.4e-43 148.1 0.1 1.7e-43 147.8 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|88601563|ref|YP_501741.1| - 4.9e-08 32.8 4.0 1e-07 31.7 4.0 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|88601563|ref|YP_501741.1| - 0.78 10.0 4.1 0.3 11.3 1.2 1.8 2 0 0 2 2 2 0 LIM domain Pilin_N PF07790.11 gi|88601564|ref|YP_501742.1| - 3.8e-17 63.0 1.4 5.9e-17 62.4 1.4 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Phage_head_fibr PF11133.8 gi|88601564|ref|YP_501742.1| - 0.021 14.2 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Head fiber protein Pilin_N PF07790.11 gi|88601565|ref|YP_501743.1| - 3.3e-21 76.0 0.1 6.1e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Methyltransf_11 PF08241.12 gi|88601566|ref|YP_501744.1| - 1.3e-22 80.2 0.0 2.6e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601566|ref|YP_501744.1| - 3e-20 72.7 0.0 5.8e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601566|ref|YP_501744.1| - 2.1e-19 69.8 0.0 3.4e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88601566|ref|YP_501744.1| - 6.3e-15 55.2 0.0 9e-14 51.4 0.0 2.1 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|88601566|ref|YP_501744.1| - 6.5e-14 52.1 0.0 1e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601566|ref|YP_501744.1| - 2.4e-13 50.6 0.0 7.3e-13 49.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MarR PF01047.22 gi|88601566|ref|YP_501744.1| - 6.6e-08 32.4 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88601566|ref|YP_501744.1| - 1.4e-07 31.3 0.0 7.7e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|88601566|ref|YP_501744.1| - 3.3e-06 27.5 0.0 8.9e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain MTS PF05175.14 gi|88601566|ref|YP_501744.1| - 7e-06 25.7 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Fe_dep_repress PF01325.19 gi|88601566|ref|YP_501744.1| - 6.2e-05 23.1 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MetW PF07021.12 gi|88601566|ref|YP_501744.1| - 0.00014 21.5 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW HTH_24 PF13412.6 gi|88601566|ref|YP_501744.1| - 0.0011 18.5 0.0 0.0043 16.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|88601566|ref|YP_501744.1| - 0.01 15.6 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Methyltransf_18 PF12847.7 gi|88601566|ref|YP_501744.1| - 0.02 14.8 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|88601566|ref|YP_501744.1| - 0.031 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|88601566|ref|YP_501744.1| - 0.036 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase HTH_Crp_2 PF13545.6 gi|88601566|ref|YP_501744.1| - 0.039 13.9 0.0 0.093 12.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_14 PF13173.6 gi|88601567|ref|YP_501745.1| - 3.3e-34 117.7 0.1 7.8e-34 116.5 0.1 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88601567|ref|YP_501745.1| - 1.2e-07 31.9 0.1 2e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA PF00004.29 gi|88601567|ref|YP_501745.1| - 1.3e-05 25.7 0.0 2.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|88601567|ref|YP_501745.1| - 5e-05 23.7 0.1 0.0018 18.7 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|88601567|ref|YP_501745.1| - 9.2e-05 22.5 1.3 0.45 10.4 0.1 3.0 2 1 1 3 3 3 2 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|88601567|ref|YP_501745.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|88601567|ref|YP_501745.1| - 0.0026 18.0 0.1 1.1 9.5 0.0 2.7 1 1 0 2 2 2 1 AAA domain HTH_11 PF08279.12 gi|88601567|ref|YP_501745.1| - 0.0058 16.6 0.1 0.025 14.5 0.1 2.1 1 1 0 1 1 1 1 HTH domain AAA_15 PF13175.6 gi|88601567|ref|YP_501745.1| - 0.0088 15.8 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain BpuJI_N PF11564.8 gi|88601567|ref|YP_501745.1| - 0.01 15.1 0.1 0.019 14.2 0.1 1.5 1 0 0 1 1 1 0 Restriction endonuclease BpuJI - N terminal CPT PF07931.12 gi|88601567|ref|YP_501745.1| - 0.015 15.2 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein G-alpha PF00503.20 gi|88601567|ref|YP_501745.1| - 0.036 13.2 1.8 0.26 10.4 1.8 2.0 1 1 0 1 1 1 0 G-protein alpha subunit HTH_36 PF13730.6 gi|88601567|ref|YP_501745.1| - 0.096 12.7 0.1 0.4 10.7 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_18 PF13238.6 gi|88601567|ref|YP_501745.1| - 0.12 12.9 0.0 0.56 10.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|88601567|ref|YP_501745.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|88601567|ref|YP_501745.1| - 0.18 11.0 0.0 1.3 8.3 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin Aminotran_5 PF00266.19 gi|88601568|ref|YP_501746.1| - 6.1e-71 239.3 0.0 7.3e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|88601568|ref|YP_501746.1| - 0.00041 19.0 0.0 0.0006 18.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|88601568|ref|YP_501746.1| - 0.00041 19.8 0.1 0.0006 19.2 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Methyltransf_11 PF08241.12 gi|88601569|ref|YP_501747.1| - 8.2e-07 29.6 0.0 3e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601569|ref|YP_501747.1| - 0.002 18.0 0.0 0.0084 16.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601569|ref|YP_501747.1| - 0.011 16.4 0.0 0.023 15.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601569|ref|YP_501747.1| - 0.013 16.2 0.1 0.27 12.0 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain DnaJ PF00226.31 gi|88601570|ref|YP_501748.1| - 1.3e-11 44.4 0.0 2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 DnaJ domain DUF746 PF05344.11 gi|88601570|ref|YP_501748.1| - 0.091 12.6 0.1 0.31 10.9 0.1 1.8 1 1 0 1 1 1 0 Domain of Unknown Function (DUF746) ABC_tran PF00005.27 gi|88601571|ref|YP_501749.1| - 3.6e-28 98.8 0.0 5.6e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601571|ref|YP_501749.1| - 9.1e-10 38.8 0.2 0.00012 22.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601571|ref|YP_501749.1| - 3.2e-07 30.0 0.0 0.0043 16.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|88601571|ref|YP_501749.1| - 8.1e-05 22.5 0.3 0.029 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain T2SSE PF00437.20 gi|88601571|ref|YP_501749.1| - 0.0013 17.8 0.0 0.0029 16.7 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|88601571|ref|YP_501749.1| - 0.0033 18.0 0.0 0.0058 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|88601571|ref|YP_501749.1| - 0.0038 17.8 0.0 0.011 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|88601571|ref|YP_501749.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|88601571|ref|YP_501749.1| - 0.0059 16.9 0.0 0.014 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|88601571|ref|YP_501749.1| - 0.013 15.6 0.0 0.027 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88601571|ref|YP_501749.1| - 0.025 14.5 0.1 0.19 11.6 0.0 2.2 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.6 gi|88601571|ref|YP_501749.1| - 0.025 14.8 0.0 0.77 10.0 0.0 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Spore_IV_A PF09547.10 gi|88601571|ref|YP_501749.1| - 0.042 12.8 0.0 0.18 10.7 0.0 1.8 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) Rad17 PF03215.15 gi|88601571|ref|YP_501749.1| - 0.043 13.7 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|88601571|ref|YP_501749.1| - 0.068 13.6 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|88601571|ref|YP_501749.1| - 0.074 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain ATP_bind_1 PF03029.17 gi|88601571|ref|YP_501749.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|88601571|ref|YP_501749.1| - 0.087 12.5 0.0 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|88601572|ref|YP_501750.1| - 1.2e-88 297.1 30.1 1.5e-88 296.8 30.1 1.0 1 0 0 1 1 1 1 FecCD transport family Abhydrolase_6 PF12697.7 gi|88601572|ref|YP_501750.1| - 0.5 10.9 2.3 0.52 10.9 1.1 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family Peripla_BP_2 PF01497.18 gi|88601573|ref|YP_501751.1| - 1e-36 126.7 0.0 1.2e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|88601573|ref|YP_501751.1| - 1e-05 25.3 0.9 0.014 15.0 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain AP_endonuc_2 PF01261.24 gi|88601574|ref|YP_501752.1| - 9.2e-07 28.5 0.0 1.4e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DDE_Tnp_1 PF01609.21 gi|88601575|ref|YP_501753.1| - 3.7e-15 56.1 0.2 6.5e-14 52.1 0.2 2.2 1 1 0 1 1 1 1 Transposase DDE domain Response_reg PF00072.24 gi|88601576|ref|YP_501754.1| - 3.3e-21 75.6 0.0 4.3e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain P5-ATPase PF12409.8 gi|88601577|ref|YP_501755.1| - 0.014 15.5 2.3 0.046 13.8 2.3 1.7 1 1 0 1 1 1 0 P5-type ATPase cation transporter NETI PF14044.6 gi|88601577|ref|YP_501755.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 NETI protein CbiK PF06180.11 gi|88601578|ref|YP_501756.1| - 1.4e-47 162.2 0.0 1.6e-47 162.0 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.17 gi|88601578|ref|YP_501756.1| - 1e-05 25.8 0.1 0.12 12.7 0.1 2.9 2 1 0 2 2 2 2 CbiX Pilin_N PF07790.11 gi|88601579|ref|YP_501757.1| - 7.5e-24 84.5 1.2 1.1e-23 83.9 1.2 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PsbI PF02532.14 gi|88601579|ref|YP_501757.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Pilin_N PF07790.11 gi|88601580|ref|YP_501758.1| - 3.2e-25 88.9 2.3 3.2e-25 88.9 2.3 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DDE_Tnp_1_6 PF13751.6 gi|88601581|ref|YP_501759.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601581|ref|YP_501759.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601581|ref|YP_501759.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601581|ref|YP_501759.1| - 0.016 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain CbiZ PF01955.18 gi|88601583|ref|YP_501761.1| - 7.2e-62 208.9 3.9 9.3e-62 208.5 3.9 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AAA_16 PF13191.6 gi|88601584|ref|YP_501762.1| - 0.00039 20.8 0.0 0.00042 20.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain Folliculin_C PF16692.5 gi|88601584|ref|YP_501762.1| - 0.0015 18.3 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 Folliculin C-terminal domain AAA_7 PF12775.7 gi|88601584|ref|YP_501762.1| - 0.0076 15.8 0.0 0.0082 15.7 0.0 1.1 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|88601584|ref|YP_501762.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|88601584|ref|YP_501762.1| - 0.047 13.4 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|88601584|ref|YP_501762.1| - 0.048 13.0 0.1 0.063 12.7 0.1 1.1 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|88601584|ref|YP_501762.1| - 0.058 12.5 0.0 0.076 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|88601584|ref|YP_501762.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|88601584|ref|YP_501762.1| - 0.23 11.4 0.0 0.26 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain DDE_Tnp_1_6 PF13751.6 gi|88601585|ref|YP_501763.1| - 2.9e-14 53.4 0.5 2.9e-14 53.4 0.5 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601585|ref|YP_501763.1| - 3.5e-12 46.4 0.0 1e-11 44.9 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601585|ref|YP_501763.1| - 6.2e-12 45.4 0.0 1.5e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601585|ref|YP_501763.1| - 0.014 15.4 0.0 1.7 8.6 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601586|ref|YP_501764.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88601586|ref|YP_501764.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88601586|ref|YP_501764.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) AAA_lid_2 PF17863.1 gi|88601587|ref|YP_501765.1| - 4.1e-21 74.6 0.7 7.3e-21 73.8 0.7 1.4 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|88601587|ref|YP_501765.1| - 3.3e-06 26.6 0.0 1.1e-05 25.0 0.0 1.8 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|88601587|ref|YP_501765.1| - 2.4e-05 24.3 0.1 5.7e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|88601587|ref|YP_501765.1| - 0.0038 16.3 0.0 0.015 14.4 0.0 1.9 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|88601587|ref|YP_501765.1| - 0.12 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_lid_2 PF17863.1 gi|88601588|ref|YP_501766.1| - 8.1e-17 60.8 0.1 1.9e-16 59.7 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain VWA_2 PF13519.6 gi|88601588|ref|YP_501766.1| - 6.9e-14 52.4 0.0 2.1e-13 50.8 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.23 gi|88601588|ref|YP_501766.1| - 4.5e-10 39.0 0.3 9.5e-10 37.9 0.1 1.7 2 0 0 2 2 2 1 MCM P-loop domain AAA_5 PF07728.14 gi|88601588|ref|YP_501766.1| - 6.7e-09 35.9 0.0 1.8e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|88601588|ref|YP_501766.1| - 2.4e-07 31.2 0.0 4.5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activat PF00158.26 gi|88601588|ref|YP_501766.1| - 6.1e-07 29.3 0.7 3.2e-06 27.0 0.7 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|88601588|ref|YP_501766.1| - 6.9e-07 28.9 0.2 0.00012 21.6 0.2 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI VWA_CoxE PF05762.14 gi|88601588|ref|YP_501766.1| - 0.0024 17.3 2.4 0.0092 15.4 0.3 2.5 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein AAA PF00004.29 gi|88601588|ref|YP_501766.1| - 0.01 16.3 0.1 0.035 14.5 0.1 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|88601588|ref|YP_501766.1| - 0.022 14.5 0.4 0.061 13.0 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|88601588|ref|YP_501766.1| - 0.11 12.7 1.0 0.65 10.3 1.0 2.3 1 1 0 1 1 1 0 AAA domain HTH_DeoR PF08220.12 gi|88601588|ref|YP_501766.1| - 0.49 10.2 2.8 0.49 10.2 0.2 2.3 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain AAA_16 PF13191.6 gi|88601588|ref|YP_501766.1| - 1.7 9.0 3.8 1.2 9.5 0.3 2.5 3 1 1 4 4 4 0 AAA ATPase domain ATAD4 PF15321.6 gi|88601588|ref|YP_501766.1| - 7.2 8.0 8.2 2.3 9.6 4.6 2.1 2 0 0 2 2 1 0 ATPase family AAA domain containing 4 Peripla_BP_2 PF01497.18 gi|88601589|ref|YP_501767.1| - 2.6e-22 79.6 0.0 4.1e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|88601590|ref|YP_501768.1| - 3.9e-75 252.8 40.8 5e-75 252.4 40.8 1.1 1 0 0 1 1 1 1 FecCD transport family 7tm_1 PF00001.21 gi|88601590|ref|YP_501768.1| - 0.34 10.2 5.9 0.57 9.5 5.4 1.6 1 1 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) ABC_tran PF00005.27 gi|88601591|ref|YP_501769.1| - 3.8e-31 108.4 0.0 1.1e-30 106.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|88601591|ref|YP_501769.1| - 4.7e-13 49.6 1.3 1.2e-05 25.3 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|88601591|ref|YP_501769.1| - 3.9e-06 26.4 0.0 5.6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|88601591|ref|YP_501769.1| - 4.1e-06 26.4 0.5 0.015 14.8 0.1 2.4 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601591|ref|YP_501769.1| - 4.9e-06 26.2 0.2 8.9e-05 22.2 0.1 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88601591|ref|YP_501769.1| - 2e-05 24.5 1.1 0.00062 19.6 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601591|ref|YP_501769.1| - 0.00013 22.5 0.1 0.00024 21.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|88601591|ref|YP_501769.1| - 0.00067 19.9 0.2 0.0028 17.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88601591|ref|YP_501769.1| - 0.002 18.5 0.0 0.003 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88601591|ref|YP_501769.1| - 0.0038 17.1 0.1 0.01 15.8 0.1 1.7 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|88601591|ref|YP_501769.1| - 0.0049 16.1 0.2 0.057 12.6 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_33 PF13671.6 gi|88601591|ref|YP_501769.1| - 0.0051 17.0 0.1 0.024 14.8 0.1 2.2 2 1 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|88601591|ref|YP_501769.1| - 0.0093 15.9 0.1 0.031 14.2 0.1 1.8 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|88601591|ref|YP_501769.1| - 0.01 15.6 0.0 0.03 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|88601591|ref|YP_501769.1| - 0.01 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|88601591|ref|YP_501769.1| - 0.022 15.3 0.2 0.22 12.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|88601591|ref|YP_501769.1| - 0.028 13.5 0.0 0.066 12.3 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|88601591|ref|YP_501769.1| - 0.032 14.2 0.1 0.083 12.9 0.1 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|88601591|ref|YP_501769.1| - 0.055 13.5 0.1 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|88601591|ref|YP_501769.1| - 0.064 13.2 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|88601591|ref|YP_501769.1| - 0.066 13.3 0.1 0.13 12.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|88601591|ref|YP_501769.1| - 0.097 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|88601591|ref|YP_501769.1| - 0.11 13.0 0.1 0.26 11.7 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|88601591|ref|YP_501769.1| - 0.13 12.2 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Fer4_NifH PF00142.18 gi|88601592|ref|YP_501770.1| - 3.9e-80 269.2 0.0 6.6e-80 268.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Oxidored_nitro PF00148.19 gi|88601592|ref|YP_501770.1| - 8.9e-73 245.3 0.0 1.1e-72 245.0 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase CbiA PF01656.23 gi|88601592|ref|YP_501770.1| - 1.8e-11 44.2 0.0 4.1e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|88601592|ref|YP_501770.1| - 1.5e-08 34.8 0.0 4.8e-07 29.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|88601592|ref|YP_501770.1| - 3.2e-07 29.8 0.2 6e-07 28.9 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|88601592|ref|YP_501770.1| - 5e-06 26.2 0.0 3.9e-05 23.2 0.0 2.3 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|88601592|ref|YP_501770.1| - 0.0058 15.9 0.1 0.011 15.0 0.1 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_7 PF12775.7 gi|88601592|ref|YP_501770.1| - 0.015 14.9 0.2 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|88601592|ref|YP_501770.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|88601592|ref|YP_501770.1| - 0.023 13.7 0.0 0.048 12.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|88601592|ref|YP_501770.1| - 0.034 13.6 0.0 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|88601592|ref|YP_501770.1| - 0.042 13.0 0.0 0.08 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|88601592|ref|YP_501770.1| - 0.044 14.2 0.0 0.09 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|88601592|ref|YP_501770.1| - 0.07 13.5 0.0 0.23 11.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|88601592|ref|YP_501770.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 NTPase Oxidored_nitro PF00148.19 gi|88601593|ref|YP_501771.1| - 8.5e-39 133.4 0.0 1.1e-38 133.1 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase CobN-Mg_chel PF02514.16 gi|88601594|ref|YP_501772.1| - 0 1199.5 0.0 0 1199.0 0.0 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3479 PF11965.8 gi|88601594|ref|YP_501772.1| - 0.025 14.7 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) CobA_CobO_BtuR PF02572.15 gi|88601596|ref|YP_501774.1| - 6.6e-57 192.5 0.0 7.5e-57 192.3 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Methyltransf_11 PF08241.12 gi|88601597|ref|YP_501775.1| - 2.6e-18 66.4 0.0 4.3e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601597|ref|YP_501775.1| - 1.8e-17 63.8 0.0 3.7e-17 62.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601597|ref|YP_501775.1| - 4.7e-17 62.2 0.0 8.7e-17 61.3 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601597|ref|YP_501775.1| - 2.4e-13 50.3 0.0 2.9e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601597|ref|YP_501775.1| - 1.6e-12 48.0 0.0 2.9e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88601597|ref|YP_501775.1| - 8.8e-10 38.4 0.0 1.3e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|88601597|ref|YP_501775.1| - 1.4e-09 37.6 0.0 1.9e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|88601597|ref|YP_501775.1| - 1.3e-05 24.7 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|88601597|ref|YP_501775.1| - 5.3e-05 23.1 0.0 6.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|88601597|ref|YP_501775.1| - 7e-05 22.3 0.0 0.0001 21.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 gi|88601597|ref|YP_501775.1| - 0.00036 21.5 0.0 0.0021 19.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|88601597|ref|YP_501775.1| - 0.001 18.7 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.18 gi|88601597|ref|YP_501775.1| - 0.0029 17.1 0.0 0.35 10.3 0.0 2.2 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_16 PF10294.9 gi|88601597|ref|YP_501775.1| - 0.0098 15.6 0.0 0.02 14.7 0.0 1.5 1 1 0 1 1 1 1 Lysine methyltransferase FtsJ PF01728.19 gi|88601597|ref|YP_501775.1| - 0.032 14.3 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|88601597|ref|YP_501775.1| - 0.036 14.1 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|88601597|ref|YP_501775.1| - 0.066 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_4 PF02390.17 gi|88601597|ref|YP_501775.1| - 0.071 12.6 0.0 2.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_3 PF01596.17 gi|88601597|ref|YP_501775.1| - 0.087 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PrmA PF06325.13 gi|88601597|ref|YP_501775.1| - 0.098 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Rsm22 PF09243.10 gi|88601597|ref|YP_501775.1| - 0.23 10.7 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Peripla_BP_2 PF01497.18 gi|88601598|ref|YP_501776.1| - 3.8e-29 101.9 0.1 4.5e-29 101.7 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ABC2_membrane PF01061.24 gi|88601599|ref|YP_501777.1| - 5.9e-27 94.5 17.5 9.1e-27 93.8 17.5 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88601599|ref|YP_501777.1| - 1.3e-09 37.7 23.9 1.3e-09 37.7 23.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88601599|ref|YP_501777.1| - 0.00014 21.3 10.0 0.00014 21.3 10.0 1.9 1 1 0 2 2 2 1 ABC-2 family transporter protein FAM165 PF14981.6 gi|88601599|ref|YP_501777.1| - 0.034 13.9 0.3 0.35 10.7 0.1 2.6 3 0 0 3 3 3 0 FAM165 family ABC2_membrane_4 PF12730.7 gi|88601599|ref|YP_501777.1| - 9.8 6.1 14.9 0.89 9.5 10.0 1.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|88601600|ref|YP_501778.1| - 7.9e-28 97.7 0.0 1.1e-27 97.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601600|ref|YP_501778.1| - 3.4e-12 46.8 1.2 9.6e-09 35.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88601600|ref|YP_501778.1| - 5e-07 30.3 0.0 1e-06 29.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|88601600|ref|YP_501778.1| - 6.9e-05 23.4 0.0 0.0001 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88601600|ref|YP_501778.1| - 0.00037 20.0 0.3 0.2 11.1 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|88601600|ref|YP_501778.1| - 0.00086 19.1 0.0 0.19 11.4 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain KdpD PF02702.17 gi|88601600|ref|YP_501778.1| - 0.0015 18.1 0.0 0.0032 17.0 0.0 1.6 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_22 PF13401.6 gi|88601600|ref|YP_501778.1| - 0.0029 17.9 0.0 0.0063 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|88601600|ref|YP_501778.1| - 0.0038 17.0 0.1 0.27 10.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|88601600|ref|YP_501778.1| - 0.0061 16.3 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|88601600|ref|YP_501778.1| - 0.017 15.5 0.1 0.2 12.1 0.1 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cytochrom_D1 PF02239.16 gi|88601600|ref|YP_501778.1| - 0.033 12.7 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Cytochrome D1 heme domain DUF3403 PF11883.8 gi|88601600|ref|YP_501778.1| - 0.057 13.5 0.0 1.4 9.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3403) AAA_16 PF13191.6 gi|88601600|ref|YP_501778.1| - 0.07 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|88601600|ref|YP_501778.1| - 0.12 11.9 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|88601601|ref|YP_501779.1| - 3.1e-34 118.4 0.0 4.5e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|88601601|ref|YP_501779.1| - 1.8e-08 34.1 0.6 5.9e-08 32.4 0.6 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|88601601|ref|YP_501779.1| - 2.4e-08 34.1 0.2 1.9e-05 24.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88601601|ref|YP_501779.1| - 1.4e-05 25.0 0.4 0.00015 21.6 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|88601601|ref|YP_501779.1| - 3e-05 23.7 0.1 6.3e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|88601601|ref|YP_501779.1| - 5.5e-05 23.7 0.0 6.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|88601601|ref|YP_501779.1| - 0.00047 19.6 0.0 0.00075 18.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|88601601|ref|YP_501779.1| - 0.00059 18.6 0.2 0.33 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain ATP_bind_1 PF03029.17 gi|88601601|ref|YP_501779.1| - 0.0011 18.8 0.2 0.15 11.8 0.0 2.4 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|88601601|ref|YP_501779.1| - 0.0013 19.2 0.0 0.0023 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|88601601|ref|YP_501779.1| - 0.0021 18.1 0.1 0.17 11.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|88601601|ref|YP_501779.1| - 0.0026 18.2 0.1 0.015 15.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|88601601|ref|YP_501779.1| - 0.0031 17.4 0.1 0.011 15.7 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 gi|88601601|ref|YP_501779.1| - 0.0066 16.5 0.0 0.043 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|88601601|ref|YP_501779.1| - 0.0072 15.2 0.1 1.4 7.6 0.1 2.5 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|88601601|ref|YP_501779.1| - 0.0089 16.3 0.1 0.049 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|88601601|ref|YP_501779.1| - 0.011 15.6 0.0 0.036 14.0 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 gi|88601601|ref|YP_501779.1| - 0.017 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|88601601|ref|YP_501779.1| - 0.018 14.8 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88601601|ref|YP_501779.1| - 0.019 14.7 0.0 0.028 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|88601601|ref|YP_501779.1| - 0.021 13.7 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) G-alpha PF00503.20 gi|88601601|ref|YP_501779.1| - 0.026 13.7 0.0 0.028 13.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|88601601|ref|YP_501779.1| - 0.041 14.4 0.1 0.2 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|88601601|ref|YP_501779.1| - 0.058 13.8 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 RNA helicase RNA12 PF10443.9 gi|88601601|ref|YP_501779.1| - 0.066 11.9 0.2 0.82 8.3 0.0 2.0 2 0 0 2 2 2 0 RNA12 protein ATPase_2 PF01637.18 gi|88601601|ref|YP_501779.1| - 0.074 13.0 0.1 0.16 11.8 0.1 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|88601601|ref|YP_501779.1| - 0.094 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|88601601|ref|YP_501779.1| - 0.11 12.5 0.7 0.22 11.6 0.7 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|88601601|ref|YP_501779.1| - 0.16 12.2 0.3 0.31 11.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|88601601|ref|YP_501779.1| - 0.32 11.3 1.4 0.98 9.7 1.4 1.9 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|88601602|ref|YP_501780.1| - 5.5e-90 301.5 29.8 6.4e-90 301.3 29.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|88601602|ref|YP_501780.1| - 2.4e-05 24.0 19.5 4.2e-05 23.2 19.5 1.4 1 0 0 1 1 1 1 ABC 3 transport family RhodobacterPufX PF11511.8 gi|88601602|ref|YP_501780.1| - 0.2 11.3 9.2 0.065 12.8 0.8 3.4 2 1 1 3 3 3 0 Intrinsic membrane protein PufX DUF4293 PF14126.6 gi|88601602|ref|YP_501780.1| - 8.8 6.6 8.5 45 4.3 8.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) AAA_lid_2 PF17863.1 gi|88601603|ref|YP_501781.1| - 1.6e-22 79.1 0.6 3.3e-22 78.1 0.6 1.5 1 0 0 1 1 1 1 AAA lid domain VWA_2 PF13519.6 gi|88601603|ref|YP_501781.1| - 2.9e-16 60.0 0.0 2.3e-15 57.1 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|88601603|ref|YP_501781.1| - 7.2e-12 45.9 0.0 2e-11 44.4 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|88601603|ref|YP_501781.1| - 2e-11 43.7 0.5 3.1e-07 30.0 0.0 3.0 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|88601603|ref|YP_501781.1| - 9.6e-10 38.6 0.1 6.6e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|88601603|ref|YP_501781.1| - 4.1e-07 29.3 1.8 4.7e-05 22.6 0.0 3.4 3 1 0 3 3 3 1 MCM P-loop domain AAA_16 PF13191.6 gi|88601603|ref|YP_501781.1| - 6.1e-05 23.5 0.0 0.00045 20.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|88601603|ref|YP_501781.1| - 0.0014 19.0 0.0 0.005 17.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|88601603|ref|YP_501781.1| - 0.0019 18.0 0.1 0.9 9.4 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|88601603|ref|YP_501781.1| - 0.0041 16.8 0.0 0.54 9.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase_C PF13335.6 gi|88601603|ref|YP_501781.1| - 0.015 15.9 0.3 0.034 14.8 0.3 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal VWA_CoxE PF05762.14 gi|88601603|ref|YP_501781.1| - 0.02 14.3 0.0 0.051 13.0 0.0 1.6 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein DUF815 PF05673.13 gi|88601603|ref|YP_501781.1| - 0.089 11.9 0.0 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|88601603|ref|YP_501781.1| - 0.12 12.7 0.0 0.43 10.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain DUF3408 PF11888.8 gi|88601603|ref|YP_501781.1| - 4.5 7.4 5.4 11 6.2 5.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) CobN-Mg_chel PF02514.16 gi|88601604|ref|YP_501782.1| - 0 1145.5 0.0 0 1145.3 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PNP_UDP_1 PF01048.20 gi|88601604|ref|YP_501782.1| - 0.13 11.5 0.0 0.31 10.2 0.0 1.6 1 0 0 1 1 1 0 Phosphorylase superfamily ZnuA PF01297.17 gi|88601605|ref|YP_501783.1| - 2.8e-12 46.6 0.3 5.3e-12 45.7 0.3 1.4 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC-3 PF00950.17 gi|88601606|ref|YP_501784.1| - 7.2e-46 156.8 41.9 8.8e-46 156.5 41.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|88601606|ref|YP_501784.1| - 1.9e-07 30.4 42.5 5.1e-07 29.0 42.5 1.7 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|88601607|ref|YP_501785.1| - 1.8e-28 99.8 0.0 2.3e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601607|ref|YP_501785.1| - 5e-12 46.2 1.4 9.7e-06 25.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88601607|ref|YP_501785.1| - 1e-05 25.1 0.4 0.00013 21.5 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88601607|ref|YP_501785.1| - 3.4e-05 24.4 0.3 5e-05 23.9 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601607|ref|YP_501785.1| - 0.0016 18.1 0.1 0.0034 17.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|88601607|ref|YP_501785.1| - 0.0056 16.6 1.1 0.0066 16.4 0.3 1.6 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.6 gi|88601607|ref|YP_501785.1| - 0.0085 15.8 0.1 0.081 12.6 0.1 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|88601607|ref|YP_501785.1| - 0.01 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|88601607|ref|YP_501785.1| - 0.011 15.0 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.6 gi|88601607|ref|YP_501785.1| - 0.013 15.7 0.6 0.4 10.9 0.6 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|88601607|ref|YP_501785.1| - 0.017 14.9 0.4 0.032 14.0 0.2 1.5 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|88601607|ref|YP_501785.1| - 0.018 14.6 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|88601607|ref|YP_501785.1| - 0.028 14.3 0.1 0.072 13.0 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|88601607|ref|YP_501785.1| - 0.029 14.8 0.0 0.051 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|88601607|ref|YP_501785.1| - 0.046 12.5 1.3 3.7 6.3 0.3 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|88601607|ref|YP_501785.1| - 0.047 12.8 0.4 0.071 12.2 0.4 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|88601607|ref|YP_501785.1| - 0.052 13.5 0.2 0.096 12.6 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|88601607|ref|YP_501785.1| - 0.11 12.8 1.7 0.61 10.4 1.7 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|88601607|ref|YP_501785.1| - 0.12 13.0 1.1 0.23 12.0 1.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88601607|ref|YP_501785.1| - 0.13 12.5 1.4 0.54 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88601607|ref|YP_501785.1| - 0.3 11.3 0.6 0.55 10.5 0.6 1.4 1 0 0 1 1 1 0 AAA domain Pilin_N PF07790.11 gi|88601608|ref|YP_501786.1| - 5.6e-23 81.7 1.7 9.2e-23 81.0 1.7 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|88601608|ref|YP_501786.1| - 0.74 10.0 6.5 1.8 8.7 6.6 1.6 1 1 0 1 1 1 0 Archaebacterial flagellin Pilin_N PF07790.11 gi|88601609|ref|YP_501787.1| - 8e-28 97.2 0.2 1.5e-27 96.3 0.2 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|88601610|ref|YP_501788.1| - 1.3e-21 77.3 0.5 2.9e-21 76.2 0.5 1.6 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal LTD PF00932.19 gi|88601610|ref|YP_501788.1| - 0.0042 17.4 0.1 0.043 14.2 0.1 2.1 1 1 0 1 1 1 1 Lamin Tail Domain Pilin_N PF07790.11 gi|88601611|ref|YP_501789.1| - 2.9e-26 92.2 0.5 1e-25 90.4 0.1 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal VAPB_antitox PF02697.14 gi|88601613|ref|YP_501791.1| - 0.019 15.7 0.0 0.024 15.4 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin SWIM PF04434.17 gi|88601616|ref|YP_501794.1| - 1e-05 25.1 0.1 1.6e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger SHMT PF00464.19 gi|88601616|ref|YP_501794.1| - 0.074 11.6 0.0 0.077 11.6 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase AAA_35 PF14516.6 gi|88601617|ref|YP_501795.1| - 2.4e-08 33.2 0.0 5.9e-08 31.9 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 gi|88601617|ref|YP_501795.1| - 6.1e-06 26.5 0.1 7.3e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|88601617|ref|YP_501795.1| - 1.2e-05 25.3 0.0 0.00015 21.7 0.0 2.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA-ATPase_like PF09820.9 gi|88601617|ref|YP_501795.1| - 2.4e-05 23.9 0.1 0.00025 20.6 0.1 2.6 2 1 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601617|ref|YP_501795.1| - 3.6e-05 23.6 0.0 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_16 PF13191.6 gi|88601617|ref|YP_501795.1| - 0.005 17.2 0.1 0.028 14.8 0.0 2.2 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|88601617|ref|YP_501795.1| - 0.0054 17.1 0.0 0.036 14.5 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|88601617|ref|YP_501795.1| - 0.071 13.1 0.1 0.53 10.3 0.1 2.4 1 1 0 1 1 1 0 AAA domain Spore_GerQ PF09671.10 gi|88601617|ref|YP_501795.1| - 0.14 12.2 0.1 19 5.4 0.0 2.5 2 0 0 2 2 2 0 Spore coat protein (Spore_GerQ) TPD PF14811.6 gi|88601617|ref|YP_501795.1| - 0.14 12.0 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function TPD sequence-motif Peptidase_S9 PF00326.21 gi|88601619|ref|YP_501797.1| - 0.0087 15.6 0.0 0.018 14.5 0.0 1.5 2 0 0 2 2 2 1 Prolyl oligopeptidase family TPR_1 PF00515.28 gi|88601620|ref|YP_501798.1| - 2.6e-21 74.5 0.8 1.7e-06 27.6 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88601620|ref|YP_501798.1| - 1.2e-18 65.7 0.4 2.5e-05 24.0 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88601620|ref|YP_501798.1| - 8.1e-17 60.6 1.1 1.3e-09 37.6 0.3 3.1 3 0 0 3 3 3 3 TPR repeat TPR_8 PF13181.6 gi|88601620|ref|YP_501798.1| - 9e-13 47.3 0.3 0.0018 18.4 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88601620|ref|YP_501798.1| - 2.5e-12 46.8 0.1 0.0002 21.4 0.0 3.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88601620|ref|YP_501798.1| - 2.9e-12 47.0 0.1 2.1e-05 25.0 0.1 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88601620|ref|YP_501798.1| - 5.4e-12 45.2 0.3 0.0038 17.5 0.0 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88601620|ref|YP_501798.1| - 1.1e-11 44.5 0.4 6.5e-07 29.6 0.1 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88601620|ref|YP_501798.1| - 2.3e-07 31.0 0.2 0.012 15.9 0.0 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88601620|ref|YP_501798.1| - 7.4e-07 29.6 0.1 0.0044 17.5 0.0 2.5 2 2 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88601620|ref|YP_501798.1| - 3.2e-06 27.3 0.2 0.047 13.9 0.0 2.1 1 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88601620|ref|YP_501798.1| - 2e-05 24.9 0.5 0.068 13.8 0.0 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88601620|ref|YP_501798.1| - 0.00069 19.4 1.7 0.096 12.6 0.1 3.5 3 1 1 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88601620|ref|YP_501798.1| - 0.0022 18.0 0.2 0.12 12.4 0.0 2.8 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|88601620|ref|YP_501798.1| - 0.0023 17.8 1.9 1.3 9.3 0.1 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|88601620|ref|YP_501798.1| - 0.029 14.4 0.7 0.086 12.9 0.0 2.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88601620|ref|YP_501798.1| - 0.049 14.0 0.0 0.31 11.4 0.0 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Stanniocalcin PF03298.13 gi|88601620|ref|YP_501798.1| - 0.083 12.2 0.0 0.099 12.0 0.0 1.2 1 0 0 1 1 1 0 Stanniocalcin family Pilin_N PF07790.11 gi|88601621|ref|YP_501799.1| - 8.1e-15 55.5 0.9 2.1e-14 54.2 0.3 1.9 2 1 1 3 3 3 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|88601622|ref|YP_501800.1| - 1.9e-22 80.0 0.5 3.5e-22 79.1 0.5 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|88601623|ref|YP_501801.1| - 0.0008 20.3 0.1 0.0024 18.8 0.1 1.9 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Ac76 PF05814.11 gi|88601623|ref|YP_501801.1| - 0.018 15.0 0.9 0.041 13.9 0.9 1.6 1 0 0 1 1 1 0 Orf76 (Ac76) EMP24_GP25L PF01105.24 gi|88601623|ref|YP_501801.1| - 0.09 12.7 2.5 0.59 10.0 0.0 2.5 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD T2SSF PF00482.23 gi|88601624|ref|YP_501802.1| - 1.4e-21 76.8 2.8 2.7e-12 46.7 0.1 4.0 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|88601625|ref|YP_501803.1| - 4.6e-50 170.2 0.0 2.7e-49 167.7 0.0 2.1 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|88601625|ref|YP_501803.1| - 0.14 12.6 5.4 1 9.8 1.0 2.8 2 1 0 2 2 2 0 AAA domain WH1 PF00568.23 gi|88601625|ref|YP_501803.1| - 0.22 11.5 0.5 4.1 7.4 0.0 2.8 3 0 0 3 3 3 0 WH1 domain Response_reg PF00072.24 gi|88601626|ref|YP_501804.1| - 8.8e-25 87.1 0.0 9.8e-25 86.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain NTP_transf_5 PF14907.6 gi|88601626|ref|YP_501804.1| - 0.097 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase FHA PF00498.26 gi|88601627|ref|YP_501805.1| - 7.5e-12 45.4 0.0 1.2e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 FHA domain HTH_20 PF12840.7 gi|88601627|ref|YP_501805.1| - 2.4e-10 40.3 0.2 4.1e-10 39.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88601627|ref|YP_501805.1| - 3.8e-08 33.1 0.2 1e-07 31.7 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Yop-YscD_cpl PF16697.5 gi|88601627|ref|YP_501805.1| - 2.6e-06 27.7 0.0 0.0022 18.3 0.0 2.4 2 0 0 2 2 2 2 Inner membrane component of T3SS, cytoplasmic domain Rrf2 PF02082.20 gi|88601627|ref|YP_501805.1| - 0.0064 16.8 0.1 0.016 15.6 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|88601627|ref|YP_501805.1| - 0.019 14.9 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|88601627|ref|YP_501805.1| - 0.062 13.3 1.0 4.9 7.2 0.1 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|88601627|ref|YP_501805.1| - 0.069 13.3 0.7 0.24 11.6 0.1 2.1 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|88601627|ref|YP_501805.1| - 0.13 12.8 0.1 0.25 11.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pkinase PF00069.25 gi|88601628|ref|YP_501806.1| - 6.5e-42 143.7 0.0 9e-42 143.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|88601628|ref|YP_501806.1| - 8.5e-28 97.3 0.0 1.3e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|88601628|ref|YP_501806.1| - 0.00013 21.4 0.0 0.0011 18.3 0.0 2.2 3 0 0 3 3 3 1 Kinase-like APH PF01636.23 gi|88601628|ref|YP_501806.1| - 0.00044 20.3 0.0 0.00064 19.7 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Haspin_kinase PF12330.8 gi|88601628|ref|YP_501806.1| - 0.0014 17.7 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Haspin like kinase domain Pkinase_fungal PF17667.1 gi|88601628|ref|YP_501806.1| - 0.071 11.9 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Kdo PF06293.14 gi|88601628|ref|YP_501806.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Ycf9 PF01737.17 gi|88601628|ref|YP_501806.1| - 0.28 11.1 5.4 0.54 10.2 0.3 2.7 2 0 0 2 2 2 0 YCF9 KfrA_N PF11740.8 gi|88601630|ref|YP_501808.1| - 6.4e-06 26.8 0.1 0.065 13.9 0.1 2.1 1 1 1 2 2 2 2 Plasmid replication region DNA-binding N-term PepSY_2 PF13670.6 gi|88601630|ref|YP_501808.1| - 0.0006 19.8 0.0 0.067 13.2 0.0 2.3 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain RecX PF02631.16 gi|88601630|ref|YP_501808.1| - 0.0046 17.4 0.1 3.8 8.0 0.1 2.1 1 1 0 2 2 2 2 RecX family IF2_N PF04760.15 gi|88601630|ref|YP_501808.1| - 0.0061 16.4 1.1 2.8 7.9 0.1 2.6 2 1 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region TPR_16 PF13432.6 gi|88601630|ref|YP_501808.1| - 0.012 16.3 0.1 0.23 12.2 0.1 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF724 PF05266.14 gi|88601630|ref|YP_501808.1| - 0.013 15.4 0.0 2.1 8.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF4521 PF15021.6 gi|88601630|ref|YP_501808.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) RepB PF07506.11 gi|88601630|ref|YP_501808.1| - 0.017 15.2 0.0 6.2 6.9 0.0 2.1 2 0 0 2 2 2 0 RepB plasmid partitioning protein UPF0180 PF03698.13 gi|88601630|ref|YP_501808.1| - 0.021 15.0 0.0 5.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) YfdX PF10938.8 gi|88601630|ref|YP_501808.1| - 0.025 14.5 2.0 0.16 11.9 2.0 1.9 1 1 0 1 1 1 0 YfdX protein Cytochrom_B562 PF07361.11 gi|88601630|ref|YP_501808.1| - 0.029 15.0 1.7 0.28 11.9 1.4 2.0 1 1 1 2 2 2 0 Cytochrome b562 TPR_6 PF13174.6 gi|88601630|ref|YP_501808.1| - 0.066 13.9 0.0 13 6.6 0.0 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF4375 PF14300.6 gi|88601630|ref|YP_501808.1| - 0.079 13.2 0.1 0.098 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4375) TPR_19 PF14559.6 gi|88601630|ref|YP_501808.1| - 0.09 13.3 0.3 20 5.8 0.0 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat Fea1 PF07692.11 gi|88601630|ref|YP_501808.1| - 0.098 11.7 0.1 7.9 5.4 0.0 2.0 2 0 0 2 2 2 0 Low iron-inducible periplasmic protein ATP-cone PF03477.16 gi|88601630|ref|YP_501808.1| - 0.12 12.9 0.1 0.25 12.0 0.1 1.5 1 1 0 1 1 1 0 ATP cone domain DUF4363 PF14276.6 gi|88601630|ref|YP_501808.1| - 0.16 12.1 0.3 1.2 9.3 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4363) DUF1380 PF07128.12 gi|88601630|ref|YP_501808.1| - 0.16 12.1 0.0 0.23 11.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1380) TPR_14 PF13428.6 gi|88601630|ref|YP_501808.1| - 0.19 12.6 0.3 2.6 9.1 0.1 2.3 2 1 0 2 2 2 0 Tetratricopeptide repeat SMBP PF16785.5 gi|88601630|ref|YP_501808.1| - 1.2 9.4 5.0 12 6.2 5.0 2.0 1 1 0 1 1 1 0 Small metal-binding protein CARDB PF07705.11 gi|88601631|ref|YP_501809.1| - 0.00072 19.8 7.2 0.015 15.6 0.6 3.0 3 0 0 3 3 3 2 CARDB Transglut_C PF00927.22 gi|88601631|ref|YP_501809.1| - 0.001 19.2 0.0 0.011 15.8 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain DUF1573 PF07610.11 gi|88601631|ref|YP_501809.1| - 0.14 12.2 0.4 5.6 7.1 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) TRAP_beta PF05753.14 gi|88601631|ref|YP_501809.1| - 7.5 5.9 6.5 1.1 8.6 0.8 2.5 3 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) ABC_tran PF00005.27 gi|88601632|ref|YP_501810.1| - 1e-34 120.0 0.0 1.4e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|88601632|ref|YP_501810.1| - 1.5e-10 40.9 0.1 3.1e-06 26.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|88601632|ref|YP_501810.1| - 1.7e-08 34.6 0.1 0.0031 17.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601632|ref|YP_501810.1| - 3.2e-05 23.6 0.1 6.8e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|88601632|ref|YP_501810.1| - 6.7e-05 22.9 0.1 0.00013 21.9 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|88601632|ref|YP_501810.1| - 0.0013 19.0 0.0 0.0073 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|88601632|ref|YP_501810.1| - 0.0013 18.5 0.0 0.27 10.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|88601632|ref|YP_501810.1| - 0.0026 18.1 0.1 0.0031 17.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|88601632|ref|YP_501810.1| - 0.0036 17.4 0.2 0.011 15.8 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|88601632|ref|YP_501810.1| - 0.004 17.1 0.4 2.6 8.0 0.1 2.2 2 0 0 2 2 2 2 NTPase IstB_IS21 PF01695.17 gi|88601632|ref|YP_501810.1| - 0.0061 16.3 0.0 0.097 12.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.6 gi|88601632|ref|YP_501810.1| - 0.0063 17.0 0.1 0.016 15.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|88601632|ref|YP_501810.1| - 0.01 16.1 0.0 0.035 14.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|88601632|ref|YP_501810.1| - 0.011 15.3 0.0 0.024 14.2 0.0 1.5 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.20 gi|88601632|ref|YP_501810.1| - 0.016 14.3 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 gi|88601632|ref|YP_501810.1| - 0.021 14.6 0.4 0.081 12.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|88601632|ref|YP_501810.1| - 0.023 14.6 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|88601632|ref|YP_501810.1| - 0.036 14.2 0.1 0.094 12.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|88601632|ref|YP_501810.1| - 0.04 14.5 0.2 0.17 12.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|88601632|ref|YP_501810.1| - 0.049 12.7 0.2 0.47 9.5 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|88601632|ref|YP_501810.1| - 0.066 12.4 0.1 0.18 11.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|88601632|ref|YP_501810.1| - 0.078 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Dynamin_N PF00350.23 gi|88601632|ref|YP_501810.1| - 0.087 12.9 0.2 0.18 11.8 0.2 1.5 1 0 0 1 1 1 0 Dynamin family Rad17 PF03215.15 gi|88601632|ref|YP_501810.1| - 0.095 12.6 0.3 0.43 10.5 0.0 1.9 1 1 0 2 2 2 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|88601632|ref|YP_501810.1| - 0.11 12.0 0.0 0.81 9.2 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region Poly_export PF02563.16 gi|88601632|ref|YP_501810.1| - 0.11 12.7 0.0 0.27 11.5 0.0 1.6 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein FtsK_SpoIIIE PF01580.18 gi|88601632|ref|YP_501810.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|88601632|ref|YP_501810.1| - 0.14 11.9 0.0 0.37 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.7 gi|88601633|ref|YP_501811.1| - 1e-19 71.7 0.4 1e-19 71.7 0.4 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|88601633|ref|YP_501811.1| - 7.5e-12 45.6 4.0 7.5e-12 45.6 4.0 3.1 3 0 0 3 3 3 2 FtsX-like permease family DUF4064 PF13273.6 gi|88601633|ref|YP_501811.1| - 0.0041 17.4 16.9 0.83 10.0 0.4 3.5 3 0 0 3 3 3 3 Protein of unknown function (DUF4064) Acetyltransf_1 PF00583.25 gi|88601634|ref|YP_501812.1| - 2.8e-06 27.5 0.0 3.8e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|88601634|ref|YP_501812.1| - 0.023 14.6 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|88601634|ref|YP_501812.1| - 0.044 14.2 0.1 0.12 12.8 0.1 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|88601634|ref|YP_501812.1| - 0.059 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SPOB_a PF14689.6 gi|88601635|ref|YP_501813.1| - 0.0064 16.2 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c PF02518.26 gi|88601636|ref|YP_501814.1| - 5.4e-11 43.0 0.0 8.8e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|88601636|ref|YP_501814.1| - 0.059 13.2 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SprT-like PF10263.9 gi|88601636|ref|YP_501814.1| - 0.077 12.9 0.3 0.16 11.8 0.3 1.6 1 1 0 1 1 1 0 SprT-like family Peripla_BP_6 PF13458.6 gi|88601637|ref|YP_501815.1| - 3.9e-51 174.7 0.1 4.7e-51 174.5 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|88601637|ref|YP_501815.1| - 8.5e-17 61.2 1.7 6e-09 35.4 0.5 3.1 3 0 0 3 3 3 3 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|88601637|ref|YP_501815.1| - 4.6e-09 35.9 0.3 2.6e-05 23.5 0.0 2.3 2 1 0 2 2 2 2 Receptor family ligand binding region BPD_transp_2 PF02653.16 gi|88601638|ref|YP_501816.1| - 8.7e-45 153.0 33.5 1e-44 152.7 33.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|88601639|ref|YP_501817.1| - 4.7e-33 114.5 33.3 4.7e-33 114.5 33.3 1.5 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|88601640|ref|YP_501818.1| - 1.3e-29 103.5 0.0 1.8e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601640|ref|YP_501818.1| - 1.3e-08 35.1 1.9 0.00013 21.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601640|ref|YP_501818.1| - 0.0009 18.9 0.2 0.0022 17.7 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|88601640|ref|YP_501818.1| - 0.00092 18.7 0.2 0.079 12.4 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 gi|88601640|ref|YP_501818.1| - 0.0015 18.4 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.6 gi|88601640|ref|YP_501818.1| - 0.015 15.6 0.2 0.084 13.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|88601640|ref|YP_501818.1| - 0.019 14.7 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|88601640|ref|YP_501818.1| - 0.024 13.7 0.4 0.041 12.9 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|88601640|ref|YP_501818.1| - 0.025 15.0 0.0 0.043 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|88601640|ref|YP_501818.1| - 0.03 14.5 0.0 1 9.6 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RecA PF00154.21 gi|88601640|ref|YP_501818.1| - 0.033 13.6 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein TsaE PF02367.17 gi|88601640|ref|YP_501818.1| - 0.038 14.0 0.3 0.087 12.8 0.3 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|88601640|ref|YP_501818.1| - 0.049 13.5 0.2 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|88601640|ref|YP_501818.1| - 0.05 13.5 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|88601640|ref|YP_501818.1| - 0.051 12.8 0.1 0.085 12.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|88601640|ref|YP_501818.1| - 0.054 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|88601640|ref|YP_501818.1| - 0.06 13.5 0.4 0.066 13.4 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88601640|ref|YP_501818.1| - 0.061 12.8 0.1 0.092 12.3 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|88601640|ref|YP_501818.1| - 0.08 12.9 0.5 1.7 8.6 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|88601640|ref|YP_501818.1| - 0.084 12.9 0.0 2.4 8.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|88601640|ref|YP_501818.1| - 0.099 12.4 0.7 0.22 11.3 0.5 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_13 PF13166.6 gi|88601640|ref|YP_501818.1| - 0.11 11.2 0.4 3.3 6.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|88601640|ref|YP_501818.1| - 0.12 12.9 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|88601640|ref|YP_501818.1| - 0.15 11.4 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|88601641|ref|YP_501819.1| - 1e-24 87.6 0.0 1.5e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|88601641|ref|YP_501819.1| - 3.4e-10 39.6 0.3 6e-10 38.8 0.3 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|88601641|ref|YP_501819.1| - 3.3e-06 27.1 0.1 0.0003 20.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|88601641|ref|YP_501819.1| - 0.00016 22.0 0.3 0.0023 18.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|88601641|ref|YP_501819.1| - 0.00046 20.7 0.1 0.00075 20.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|88601641|ref|YP_501819.1| - 0.0022 17.9 0.0 0.0041 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|88601641|ref|YP_501819.1| - 0.0031 17.2 0.1 0.008 15.9 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601641|ref|YP_501819.1| - 0.0045 17.4 0.0 0.0082 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|88601641|ref|YP_501819.1| - 0.0046 15.8 0.2 2.1 7.0 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class TniB PF05621.11 gi|88601641|ref|YP_501819.1| - 0.0061 16.0 0.8 0.91 8.9 0.0 3.0 2 1 1 3 3 3 1 Bacterial TniB protein NB-ARC PF00931.22 gi|88601641|ref|YP_501819.1| - 0.0062 15.8 0.9 0.35 10.0 0.1 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.6 gi|88601641|ref|YP_501819.1| - 0.011 15.8 0.0 0.45 10.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|88601641|ref|YP_501819.1| - 0.011 16.1 0.4 0.49 10.8 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|88601641|ref|YP_501819.1| - 0.016 15.5 0.0 0.77 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|88601641|ref|YP_501819.1| - 0.024 14.2 0.1 0.56 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|88601641|ref|YP_501819.1| - 0.024 14.3 0.1 0.098 12.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|88601641|ref|YP_501819.1| - 0.027 14.0 0.1 0.058 13.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|88601641|ref|YP_501819.1| - 0.035 14.3 0.0 0.35 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|88601641|ref|YP_501819.1| - 0.055 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|88601641|ref|YP_501819.1| - 0.068 13.1 0.2 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.19 gi|88601641|ref|YP_501819.1| - 0.068 12.6 0.5 0.57 9.6 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|88601641|ref|YP_501819.1| - 0.091 12.9 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase MerR_1 PF13411.6 gi|88601641|ref|YP_501819.1| - 0.16 12.1 0.3 1 9.5 0.3 2.1 2 0 0 2 2 2 0 MerR HTH family regulatory protein AAA_24 PF13479.6 gi|88601641|ref|YP_501819.1| - 0.17 11.6 0.1 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain MCPsignal PF00015.21 gi|88601642|ref|YP_501820.1| - 2.4e-47 161.0 48.6 2.1e-46 157.9 17.5 5.6 3 1 3 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88601642|ref|YP_501820.1| - 3.5e-44 150.5 3.7 3.5e-44 150.5 3.7 5.2 4 2 1 6 6 6 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88601642|ref|YP_501820.1| - 6.9e-13 48.8 2.6 8.3e-09 35.7 0.1 5.2 3 1 0 3 3 3 1 HAMP domain TarH PF02203.15 gi|88601642|ref|YP_501820.1| - 1.6e-06 28.2 0.0 1.6e-06 28.2 0.0 3.6 4 1 0 4 4 4 1 Tar ligand binding domain homologue Mce4_CUP1 PF11887.8 gi|88601642|ref|YP_501820.1| - 0.00092 18.7 0.8 0.00092 18.7 0.8 2.9 2 1 0 2 2 2 1 Cholesterol uptake porter CUP1 of Mce4, putative Glyco_hydro_15 PF00723.21 gi|88601642|ref|YP_501820.1| - 0.0029 16.5 0.0 0.017 13.9 0.0 2.4 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 DUF948 PF06103.11 gi|88601642|ref|YP_501820.1| - 0.0078 16.4 1.7 0.0078 16.4 1.7 6.7 5 3 2 7 7 6 4 Bacterial protein of unknown function (DUF948) Mer2 PF09074.10 gi|88601642|ref|YP_501820.1| - 0.0086 15.9 0.9 0.0086 15.9 0.9 3.7 4 1 0 4 4 4 2 Mer2 DUF1664 PF07889.12 gi|88601642|ref|YP_501820.1| - 0.25 11.4 16.3 7.6 6.6 0.8 5.2 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF2951 PF11166.8 gi|88601642|ref|YP_501820.1| - 0.35 11.1 0.1 0.35 11.1 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) kleA_kleC PF17383.2 gi|88601642|ref|YP_501820.1| - 1.6 9.1 6.3 7.1 7.0 0.0 4.0 4 0 0 4 4 3 0 Uncharacterized KorC regulated protein A FUSC PF04632.12 gi|88601642|ref|YP_501820.1| - 1.8 7.0 7.6 2.4 6.6 1.3 2.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family Syntaxin-6_N PF09177.11 gi|88601642|ref|YP_501820.1| - 2.4 8.8 15.8 20 5.8 0.8 5.3 3 2 2 5 5 5 0 Syntaxin 6, N-terminal TBK1_CCD1 PF18394.1 gi|88601642|ref|YP_501820.1| - 3.1 7.3 8.3 4.8 6.7 2.4 3.2 3 0 0 3 3 3 0 TANK-binding kinase 1 coiled-coil domain 1 Goodbye PF17109.5 gi|88601642|ref|YP_501820.1| - 5.6 7.4 15.6 7.3 7.1 0.5 5.8 4 3 2 7 7 7 0 fungal STAND N-terminal Goodbye domain E1-E2_ATPase PF00122.20 gi|88601643|ref|YP_501821.1| - 1.3e-48 164.9 5.7 1.3e-48 164.9 5.7 2.9 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|88601643|ref|YP_501821.1| - 6.9e-39 133.4 8.1 6.9e-39 133.4 8.1 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|88601643|ref|YP_501821.1| - 2.2e-21 75.3 0.1 4.6e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|88601643|ref|YP_501821.1| - 2.2e-18 67.3 1.6 1.1e-17 65.0 1.6 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|88601643|ref|YP_501821.1| - 1.6e-11 44.1 0.0 1.4e-09 37.9 0.0 2.4 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|88601643|ref|YP_501821.1| - 2.1e-08 34.2 0.6 2.8e-05 24.0 0.5 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88601643|ref|YP_501821.1| - 0.0031 18.0 0.0 0.008 16.6 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ArsC PF03960.15 gi|88601644|ref|YP_501822.1| - 0.11 12.5 0.1 0.15 12.1 0.1 1.2 1 0 0 1 1 1 0 ArsC family PIN PF01850.21 gi|88601645|ref|YP_501823.1| - 1e-11 45.4 0.1 1.1e-11 45.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|88601645|ref|YP_501823.1| - 0.0025 18.3 0.4 0.0029 18.1 0.4 1.3 1 0 0 1 1 1 1 PIN domain EamA PF00892.20 gi|88601646|ref|YP_501824.1| - 3.2e-18 66.2 46.8 3.9e-10 40.0 18.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family Usp PF00582.26 gi|88601647|ref|YP_501825.1| - 2.3e-35 122.1 0.2 4.9e-19 69.2 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family DUF5612 PF18462.1 gi|88601647|ref|YP_501825.1| - 0.032 14.0 1.7 0.057 13.2 0.4 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF5612) DUF1538 PF07556.11 gi|88601648|ref|YP_501826.1| - 6.6e-59 198.7 28.5 7.6e-59 198.6 28.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.11 gi|88601649|ref|YP_501827.1| - 4.9e-64 215.5 20.6 5.6e-64 215.3 20.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) UPF0542 PF15086.6 gi|88601649|ref|YP_501827.1| - 0.48 10.4 3.6 6.7 6.7 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 P-II PF00543.22 gi|88601650|ref|YP_501828.1| - 1.6e-05 25.5 0.5 2e-05 25.1 0.5 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II HTH_24 PF13412.6 gi|88601651|ref|YP_501829.1| - 4.2e-15 55.0 0.1 5.7e-08 32.2 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|88601651|ref|YP_501829.1| - 3.4e-08 33.2 0.0 4e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|88601651|ref|YP_501829.1| - 8.5e-08 32.0 0.0 2.7e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|88601651|ref|YP_501829.1| - 8.7e-07 28.9 0.0 0.0013 18.7 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|88601651|ref|YP_501829.1| - 1.1e-05 25.1 0.0 0.00011 22.0 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|88601651|ref|YP_501829.1| - 1.7e-05 24.7 0.0 3.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|88601651|ref|YP_501829.1| - 2.1e-05 24.3 0.0 0.0025 17.7 0.0 2.3 2 0 0 2 2 2 1 HTH domain RPA_C PF08784.11 gi|88601651|ref|YP_501829.1| - 3.8e-05 24.3 0.0 0.012 16.3 0.0 2.5 3 0 0 3 3 2 1 Replication protein A C terminal HTH_AsnC-type PF13404.6 gi|88601651|ref|YP_501829.1| - 0.00012 21.8 0.1 0.027 14.3 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|88601651|ref|YP_501829.1| - 0.00097 19.3 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|88601651|ref|YP_501829.1| - 0.0022 17.8 0.0 0.036 13.9 0.0 2.4 2 1 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|88601651|ref|YP_501829.1| - 0.0022 17.6 0.0 0.054 13.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|88601651|ref|YP_501829.1| - 0.0029 17.8 0.0 2.7 8.3 0.0 2.2 2 0 0 2 2 2 2 PaaX-like protein HTH_Tnp_Tc3_2 PF01498.18 gi|88601651|ref|YP_501829.1| - 0.0081 16.4 0.0 0.87 9.9 0.0 2.4 2 0 0 2 2 2 1 Transposase Crp PF00325.20 gi|88601651|ref|YP_501829.1| - 0.0089 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_10 PF04967.12 gi|88601651|ref|YP_501829.1| - 0.012 15.4 0.0 1 9.2 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_DeoR PF08220.12 gi|88601651|ref|YP_501829.1| - 0.04 13.7 0.0 0.32 10.8 0.0 2.4 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 gi|88601651|ref|YP_501829.1| - 0.065 13.6 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|88601651|ref|YP_501829.1| - 0.067 13.2 0.0 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_26 PF13443.6 gi|88601651|ref|YP_501829.1| - 0.074 13.5 0.0 0.84 10.1 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.6 gi|88601651|ref|YP_501829.1| - 0.087 12.8 0.0 9 6.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|88601651|ref|YP_501829.1| - 0.11 12.1 0.0 16 5.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|88601651|ref|YP_501829.1| - 0.12 11.8 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF2582 PF10771.9 gi|88601651|ref|YP_501829.1| - 0.18 12.0 0.0 3.2 8.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix domain (DUF2582) Ribosomal_S25 PF03297.15 gi|88601651|ref|YP_501829.1| - 0.19 11.9 0.0 0.52 10.5 0.0 1.7 2 0 0 2 2 2 0 S25 ribosomal protein Peptidase_M48 PF01435.18 gi|88601652|ref|YP_501830.1| - 7.2e-43 146.7 0.4 9.5e-43 146.3 0.4 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|88601652|ref|YP_501830.1| - 1.8e-06 27.4 1.4 2.7e-06 26.8 0.2 1.9 2 1 0 2 2 2 1 BlaR1 peptidase M56 Phage_holin_3_6 PF07332.11 gi|88601652|ref|YP_501830.1| - 0.00064 19.7 10.9 0.019 15.0 3.5 2.6 3 0 0 3 3 3 2 Putative Actinobacterial Holin-X, holin superfamily III SprT-like PF10263.9 gi|88601652|ref|YP_501830.1| - 0.021 14.7 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Peptidase_U49 PF10463.9 gi|88601652|ref|YP_501830.1| - 0.1 12.4 0.1 6.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Peptidase U49 DUF4157 PF13699.6 gi|88601652|ref|YP_501830.1| - 0.11 12.7 0.1 0.25 11.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) FA_desaturase PF00487.24 gi|88601652|ref|YP_501830.1| - 0.22 11.4 10.6 0.43 10.4 0.4 3.0 2 1 1 3 3 3 0 Fatty acid desaturase CoA_binding_3 PF13727.6 gi|88601652|ref|YP_501830.1| - 0.22 11.5 5.6 0.13 12.3 0.5 2.2 2 0 0 2 2 2 0 CoA-binding domain DUF1129 PF06570.11 gi|88601652|ref|YP_501830.1| - 1.3 8.5 12.3 1.1 8.7 3.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) E1-E2_ATPase PF00122.20 gi|88601653|ref|YP_501831.1| - 4.2e-41 140.5 2.4 4.2e-41 140.5 2.4 3.7 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|88601653|ref|YP_501831.1| - 1.7e-35 122.4 11.7 1.7e-35 122.4 11.7 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|88601653|ref|YP_501831.1| - 3e-23 83.2 0.0 5.3e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|88601653|ref|YP_501831.1| - 7.5e-15 54.8 0.0 1.6e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|88601653|ref|YP_501831.1| - 8.8e-15 54.2 0.0 1.8e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|88601653|ref|YP_501831.1| - 2.7e-05 24.1 0.1 0.00069 19.4 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase S_4TM PF18159.1 gi|88601653|ref|YP_501831.1| - 0.0082 15.5 2.8 1.8 7.8 0.1 2.5 2 0 0 2 2 2 2 SMODS-associating 4TM effector domain HAD PF12710.7 gi|88601653|ref|YP_501831.1| - 0.091 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF21 PF01595.20 gi|88601654|ref|YP_501832.1| - 1.6e-44 151.7 5.0 2.1e-44 151.3 5.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|88601654|ref|YP_501832.1| - 4.8e-20 71.4 0.0 1.3e-19 70.0 0.0 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|88601654|ref|YP_501832.1| - 8.3e-15 55.0 3.6 1.3e-07 31.9 0.3 2.5 2 0 0 2 2 2 2 CBS domain Cation_efflux PF01545.21 gi|88601655|ref|YP_501833.1| - 4.8e-25 88.5 12.4 6.6e-25 88.0 12.4 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|88601655|ref|YP_501833.1| - 1e-06 28.7 0.0 2.2e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Phage_holin_3_6 PF07332.11 gi|88601655|ref|YP_501833.1| - 0.064 13.3 4.2 11 6.1 4.0 3.1 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III C_GCAxxG_C_C PF09719.10 gi|88601655|ref|YP_501833.1| - 0.18 12.1 0.3 0.49 10.7 0.2 1.5 1 1 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) OST3_OST6 PF04756.13 gi|88601655|ref|YP_501833.1| - 0.19 11.0 3.9 0.13 11.6 2.2 1.6 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Frag1 PF10277.9 gi|88601655|ref|YP_501833.1| - 1.8 8.1 9.7 1.2 8.6 6.0 2.0 1 1 1 2 2 2 0 Frag1/DRAM/Sfk1 family DUF1980 PF09323.10 gi|88601655|ref|YP_501833.1| - 1.9 8.4 8.7 2.9 7.8 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) DPPIV_N PF00930.21 gi|88601657|ref|YP_501835.1| - 1.1e-49 169.1 0.1 2.7e-49 167.8 0.1 1.6 1 0 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9 PF00326.21 gi|88601657|ref|YP_501835.1| - 7.7e-43 146.4 0.8 7.7e-43 146.4 0.8 1.7 2 0 0 2 2 2 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|88601657|ref|YP_501835.1| - 6.9e-06 25.5 0.2 0.0053 16.1 0.1 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Esterase PF00756.20 gi|88601657|ref|YP_501835.1| - 1.1e-05 25.2 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S15 PF02129.18 gi|88601657|ref|YP_501835.1| - 7.7e-05 22.4 0.5 0.00081 19.1 0.3 2.2 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DUF5050 PF16472.5 gi|88601657|ref|YP_501835.1| - 0.00015 21.1 0.1 0.00048 19.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF5050) Peptidase_S28 PF05577.12 gi|88601657|ref|YP_501835.1| - 0.028 13.2 0.0 0.056 12.2 0.0 1.4 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DLH PF01738.18 gi|88601657|ref|YP_501835.1| - 0.088 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 gi|88601657|ref|YP_501835.1| - 0.11 12.3 0.0 0.78 9.6 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold MCPsignal PF00015.21 gi|88601658|ref|YP_501836.1| - 2e-42 144.9 55.2 2.5e-42 144.6 26.6 4.8 3 2 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88601658|ref|YP_501836.1| - 1.1e-37 129.3 7.7 1.1e-37 129.3 7.7 5.0 4 1 1 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88601658|ref|YP_501836.1| - 5.6e-12 45.8 7.3 2.2e-08 34.3 0.2 6.2 5 2 1 6 6 6 2 HAMP domain TarH PF02203.15 gi|88601658|ref|YP_501836.1| - 4.9e-07 29.8 0.1 4.9e-07 29.8 0.1 3.6 3 2 0 3 3 3 1 Tar ligand binding domain homologue DUF1664 PF07889.12 gi|88601658|ref|YP_501836.1| - 0.00013 22.0 5.5 0.00013 22.0 5.5 5.8 4 3 1 5 5 5 1 Protein of unknown function (DUF1664) Mce4_CUP1 PF11887.8 gi|88601658|ref|YP_501836.1| - 0.58 9.6 11.6 0.05 13.0 4.5 2.7 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF948 PF06103.11 gi|88601658|ref|YP_501836.1| - 6.9 7.0 34.5 0.29 11.4 7.1 6.9 5 3 3 8 8 8 0 Bacterial protein of unknown function (DUF948) Cortex-I_coil PF09304.10 gi|88601658|ref|YP_501836.1| - 7.4 6.8 10.8 1.7 8.9 1.3 3.4 3 1 0 3 3 3 0 Cortexillin I, coiled coil Bromo_TP_like PF17027.5 gi|88601659|ref|YP_501837.1| - 0.12 12.5 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 Histone-fold protein sCache_2 PF17200.4 gi|88601660|ref|YP_501838.1| - 6.5e-18 65.1 0.0 9.4e-18 64.5 0.0 1.3 1 1 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|88601660|ref|YP_501838.1| - 3.9e-16 59.1 0.1 5.9e-16 58.5 0.1 1.2 1 0 0 1 1 1 1 Cache domain DDE_Tnp_1_6 PF13751.6 gi|88601661|ref|YP_501839.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601661|ref|YP_501839.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601661|ref|YP_501839.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601661|ref|YP_501839.1| - 0.016 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DUF5591 PF17884.1 gi|88601662|ref|YP_501840.1| - 2.8e-15 56.5 0.1 4e-15 56.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) AMP-binding PF00501.28 gi|88601663|ref|YP_501841.1| - 6.5e-103 344.6 0.0 7.7e-103 344.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88601663|ref|YP_501841.1| - 1.9e-27 96.0 0.6 3.5e-27 95.2 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|88601663|ref|YP_501841.1| - 4.9e-19 68.0 5.6 1.2e-18 66.7 5.6 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Peptidase_M24 PF00557.24 gi|88601664|ref|YP_501842.1| - 1.6e-36 125.9 0.0 2.2e-36 125.5 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|88601664|ref|YP_501842.1| - 8.6e-11 42.6 0.0 1.5e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain MCPsignal PF00015.21 gi|88601665|ref|YP_501843.1| - 3e-42 144.4 14.0 3e-42 144.4 14.0 4.4 2 1 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|88601665|ref|YP_501843.1| - 3.4e-24 85.0 0.4 3.5e-15 56.1 0.0 5.3 4 1 1 5 5 5 3 HAMP domain dCache_1 PF02743.18 gi|88601665|ref|YP_501843.1| - 9.8e-12 45.2 4.7 9.9e-12 45.2 0.0 2.9 3 0 0 3 3 3 1 Cache domain DUF1664 PF07889.12 gi|88601665|ref|YP_501843.1| - 0.002 18.2 12.9 0.21 11.6 1.1 4.3 4 1 0 4 4 4 2 Protein of unknown function (DUF1664) HAMP_N3 PF18575.1 gi|88601665|ref|YP_501843.1| - 0.062 12.9 0.0 1.4 8.6 0.0 3.0 4 0 0 4 4 4 0 HAMP N-terminal domain 3 ING PF12998.7 gi|88601665|ref|YP_501843.1| - 0.22 12.2 6.4 4.3 8.0 0.2 2.9 3 0 0 3 3 2 0 Inhibitor of growth proteins N-terminal histone-binding FlaC_arch PF05377.11 gi|88601665|ref|YP_501843.1| - 0.71 10.3 11.6 5 7.6 0.2 4.8 4 1 1 5 5 4 0 Flagella accessory protein C (FlaC) HTH_Tnp_Tc3_1 PF11427.8 gi|88601665|ref|YP_501843.1| - 1.2 9.0 6.3 1.5 8.7 0.1 3.5 4 0 0 4 4 3 0 Tc3 transposase Spc7 PF08317.11 gi|88601665|ref|YP_501843.1| - 1.7 7.5 9.5 3 6.6 0.5 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein Collectrin PF16959.5 gi|88601665|ref|YP_501843.1| - 1.7 8.4 4.4 35 4.1 0.1 2.7 2 0 0 2 2 2 0 Renal amino acid transporter BLOC1_2 PF10046.9 gi|88601665|ref|YP_501843.1| - 5.7 7.3 16.7 1.1 9.6 0.5 4.8 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|88601665|ref|YP_501843.1| - 6.7 6.6 8.6 24 4.8 0.6 3.4 2 1 2 4 4 4 0 Sec34-like family Fer4 PF00037.27 gi|88601666|ref|YP_501844.1| - 2.6e-09 36.5 16.8 9.8e-07 28.3 1.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88601666|ref|YP_501844.1| - 2.8e-07 31.0 10.5 2.8e-07 31.0 10.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88601666|ref|YP_501844.1| - 2.5e-06 27.3 16.4 6e-05 22.9 1.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88601666|ref|YP_501844.1| - 5e-06 27.4 11.7 5e-06 27.4 11.7 2.3 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88601666|ref|YP_501844.1| - 6.8e-06 26.1 15.2 1.5e-05 25.0 11.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601666|ref|YP_501844.1| - 0.00023 21.6 6.9 0.0077 16.8 0.3 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88601666|ref|YP_501844.1| - 0.0013 18.9 11.2 0.0013 18.9 11.2 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88601666|ref|YP_501844.1| - 0.0014 18.6 3.1 0.0014 18.6 3.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88601666|ref|YP_501844.1| - 0.0043 17.4 1.6 0.0043 17.4 1.6 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88601666|ref|YP_501844.1| - 0.0044 17.9 23.7 0.019 15.9 7.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88601666|ref|YP_501844.1| - 0.0083 16.2 11.2 0.0083 16.2 11.2 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88601666|ref|YP_501844.1| - 0.042 14.3 10.2 0.042 14.3 10.2 2.5 2 1 1 3 3 2 0 4Fe-4S dicluster domain Dehalogenase PF13486.6 gi|88601666|ref|YP_501844.1| - 0.053 12.9 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_15 PF13459.6 gi|88601666|ref|YP_501844.1| - 0.73 10.6 6.3 6.9 7.5 6.4 2.5 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|88601666|ref|YP_501844.1| - 1.3 9.2 15.9 0.7 10.1 1.9 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain RRM_1 PF00076.22 gi|88601667|ref|YP_501845.1| - 5.6e-23 80.5 0.0 7.9e-23 80.1 0.0 1.2 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_5 PF13893.6 gi|88601667|ref|YP_501845.1| - 1.1e-06 28.3 0.0 1.3e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_occluded PF16842.5 gi|88601667|ref|YP_501845.1| - 0.0015 18.4 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Occluded RNA-recognition motif RRM_7 PF16367.5 gi|88601667|ref|YP_501845.1| - 0.041 14.0 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif ABC_tran PF00005.27 gi|88601668|ref|YP_501846.1| - 1.8e-25 90.1 0.0 2.3e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601668|ref|YP_501846.1| - 4.3e-11 43.2 6.0 8.1e-07 29.1 1.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system FtsK_SpoIIIE PF01580.18 gi|88601668|ref|YP_501846.1| - 6e-05 22.5 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|88601668|ref|YP_501846.1| - 8.4e-05 22.9 0.1 0.0004 20.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88601668|ref|YP_501846.1| - 0.00014 22.3 0.0 0.00043 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|88601668|ref|YP_501846.1| - 0.00026 21.2 0.0 0.00048 20.3 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain SMC_N PF02463.19 gi|88601668|ref|YP_501846.1| - 0.00063 19.2 0.0 0.023 14.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88601668|ref|YP_501846.1| - 0.00082 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|88601668|ref|YP_501846.1| - 0.0031 17.5 0.0 0.038 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|88601668|ref|YP_501846.1| - 0.0033 17.2 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase MMR_HSR1 PF01926.23 gi|88601668|ref|YP_501846.1| - 0.0043 17.1 0.0 0.019 15.0 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|88601668|ref|YP_501846.1| - 0.0043 16.6 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|88601668|ref|YP_501846.1| - 0.0046 17.2 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|88601668|ref|YP_501846.1| - 0.0058 16.4 0.1 1.1 8.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|88601668|ref|YP_501846.1| - 0.0066 17.0 0.0 0.0099 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|88601668|ref|YP_501846.1| - 0.0076 16.7 0.0 0.21 12.0 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|88601668|ref|YP_501846.1| - 0.019 15.1 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88601668|ref|YP_501846.1| - 0.021 14.8 0.0 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|88601668|ref|YP_501846.1| - 0.029 13.1 0.1 2.3 6.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|88601668|ref|YP_501846.1| - 0.029 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|88601668|ref|YP_501846.1| - 0.038 13.7 0.0 0.28 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|88601668|ref|YP_501846.1| - 0.039 13.4 0.0 0.95 8.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|88601668|ref|YP_501846.1| - 0.045 13.7 0.0 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|88601668|ref|YP_501846.1| - 0.049 14.0 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|88601668|ref|YP_501846.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|88601668|ref|YP_501846.1| - 0.099 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|88601668|ref|YP_501846.1| - 0.11 13.0 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain CoA_trans PF01144.23 gi|88601668|ref|YP_501846.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase TrwB_AAD_bind PF10412.9 gi|88601668|ref|YP_501846.1| - 0.21 10.5 0.0 0.41 9.5 0.0 1.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain HisKA_7TM PF16927.5 gi|88601669|ref|YP_501847.1| - 4.2e-16 59.7 23.9 5.8e-16 59.2 23.9 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|88601669|ref|YP_501847.1| - 3.1e-11 43.8 0.0 6.5e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|88601669|ref|YP_501847.1| - 7.2e-06 26.2 0.0 2e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|88601669|ref|YP_501847.1| - 0.00064 19.9 0.0 0.0085 16.3 0.0 2.3 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|88601669|ref|YP_501847.1| - 0.0053 16.6 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88601669|ref|YP_501847.1| - 0.0071 16.3 0.0 0.034 14.1 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|88601669|ref|YP_501847.1| - 0.015 15.3 0.0 0.052 13.6 0.0 1.9 1 0 0 1 1 1 0 PAS domain HisKA_4TM PF16926.5 gi|88601669|ref|YP_501847.1| - 0.015 14.9 0.2 0.047 13.3 0.0 1.9 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|88601669|ref|YP_501847.1| - 0.027 14.4 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|88601669|ref|YP_501847.1| - 0.081 13.1 0.1 2.9 8.1 0.0 3.0 4 0 0 4 4 4 0 PAS fold AI-2E_transport PF01594.16 gi|88601670|ref|YP_501848.1| - 2.7e-49 168.1 39.3 3.1e-49 167.9 39.3 1.0 1 0 0 1 1 1 1 AI-2E family transporter OsmC PF02566.19 gi|88601671|ref|YP_501849.1| - 1.3e-10 41.6 0.0 1.8e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein VIT1 PF01988.19 gi|88601672|ref|YP_501850.1| - 0.045 13.6 2.9 0.048 13.5 2.9 1.3 1 0 0 1 1 1 0 VIT family EMP70 PF02990.16 gi|88601672|ref|YP_501850.1| - 0.24 10.0 2.8 0.3 9.7 2.8 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 AAA-ATPase_like PF09820.9 gi|88601673|ref|YP_501851.1| - 4.8e-16 59.0 2.2 5.2e-16 58.9 2.2 1.0 1 0 0 1 1 1 1 Predicted AAA-ATPase DUF3903 PF13043.6 gi|88601673|ref|YP_501851.1| - 0.0023 17.6 0.1 0.0041 16.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3903) CBFD_NFYB_HMF PF00808.23 gi|88601674|ref|YP_501852.1| - 1.8e-15 56.9 0.3 2e-15 56.8 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|88601674|ref|YP_501852.1| - 4.8e-10 39.9 0.1 4.8e-10 39.9 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|88601674|ref|YP_501852.1| - 3.4e-08 33.6 0.1 3.8e-08 33.4 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|88601674|ref|YP_501852.1| - 1.1e-05 25.5 0.3 1.2e-05 25.4 0.3 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|88601674|ref|YP_501852.1| - 1.2e-05 25.6 0.0 1.3e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|88601674|ref|YP_501852.1| - 0.00035 20.6 0.0 0.00038 20.5 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|88601674|ref|YP_501852.1| - 0.0035 17.3 0.0 0.0041 17.1 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.13 gi|88601674|ref|YP_501852.1| - 0.035 14.6 0.0 0.036 14.5 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|88601674|ref|YP_501852.1| - 0.1 12.7 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit DDE_Tnp_IS1 PF03400.13 gi|88601675|ref|YP_501853.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88601675|ref|YP_501853.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88601675|ref|YP_501853.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88601676|ref|YP_501854.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88601676|ref|YP_501854.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88601676|ref|YP_501854.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88601676|ref|YP_501854.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain MBG_2 PF18676.1 gi|88601677|ref|YP_501855.1| - 0.08 13.6 1.4 0.38 11.4 0.2 2.3 2 0 0 2 2 2 0 MBG domain (YGX type) PIN PF01850.21 gi|88601678|ref|YP_501856.1| - 1.4e-05 25.5 0.2 1.8e-05 25.2 0.2 1.3 1 0 0 1 1 1 1 PIN domain Mannitol_dh_C PF08125.13 gi|88601678|ref|YP_501856.1| - 0.089 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain Epimerase_2 PF02350.19 gi|88601679|ref|YP_501857.1| - 2.1e-31 109.1 0.0 2.5e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase FTH PF01827.27 gi|88601681|ref|YP_501859.1| - 0.01 15.7 1.7 0.01 15.7 1.7 1.5 2 0 0 2 2 2 0 FTH domain ParE-like_toxin PF15781.5 gi|88601682|ref|YP_501860.1| - 3.6e-17 62.1 0.1 4.4e-17 61.8 0.1 1.0 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system ParE_toxin PF05016.15 gi|88601682|ref|YP_501860.1| - 3.3e-06 27.6 0.1 3.8e-06 27.4 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VapB_antitoxin PF09957.9 gi|88601683|ref|YP_501861.1| - 4.3e-18 64.9 0.2 5.3e-18 64.7 0.2 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB TSCPD PF12637.7 gi|88601683|ref|YP_501861.1| - 0.061 13.6 0.0 0.065 13.5 0.0 1.2 1 0 0 1 1 1 0 TSCPD domain HicA_toxin PF07927.12 gi|88601684|ref|YP_501862.1| - 6.4e-16 58.1 0.2 7.4e-16 57.9 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|88601685|ref|YP_501863.1| - 2e-10 40.8 0.1 2.1e-10 40.8 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|88601685|ref|YP_501863.1| - 0.033 14.2 0.0 0.037 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) LEF-8 PF04941.12 gi|88601686|ref|YP_501864.1| - 0.016 13.5 0.1 0.016 13.5 0.1 1.0 1 0 0 1 1 1 0 Late expression factor 8 (LEF-8) PIN PF01850.21 gi|88601687|ref|YP_501865.1| - 5.2e-08 33.4 0.1 7.4e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 PIN domain Mannitol_dh_C PF08125.13 gi|88601687|ref|YP_501865.1| - 0.083 12.4 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain Epimerase_2 PF02350.19 gi|88601688|ref|YP_501866.1| - 3.7e-110 368.1 0.0 4.6e-110 367.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|88601688|ref|YP_501866.1| - 0.0019 18.2 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|88601688|ref|YP_501866.1| - 0.0041 17.2 0.0 0.0066 16.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_28 PF03033.20 gi|88601688|ref|YP_501866.1| - 0.024 14.7 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain ATPgrasp_Ter PF15632.6 gi|88601690|ref|YP_501868.1| - 1.2e-08 34.8 0.0 1.8e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|88601690|ref|YP_501868.1| - 2e-08 34.5 0.0 2.8e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|88601690|ref|YP_501868.1| - 0.021 14.4 0.0 0.044 13.3 0.0 1.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PHP PF02811.19 gi|88601691|ref|YP_501869.1| - 2.5e-11 44.2 0.2 2.9e-11 44.0 0.3 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|88601691|ref|YP_501869.1| - 9.3e-10 38.1 0.0 1.7e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 PHP-associated Mab-21 PF03281.14 gi|88601691|ref|YP_501869.1| - 0.031 13.6 0.1 0.046 13.0 0.1 1.3 1 0 0 1 1 1 0 Mab-21 protein Ribosomal_S2 PF00318.20 gi|88601691|ref|YP_501869.1| - 0.037 13.2 0.0 0.071 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S2 Methyltransf_23 PF13489.6 gi|88601692|ref|YP_501870.1| - 4.3e-16 59.2 0.0 1.1e-15 57.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601692|ref|YP_501870.1| - 0.0088 16.7 0.0 0.17 12.6 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88601692|ref|YP_501870.1| - 0.12 13.1 0.0 0.61 10.8 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88601692|ref|YP_501870.1| - 0.14 12.9 0.0 0.48 11.2 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain GATA PF00320.27 gi|88601692|ref|YP_501870.1| - 0.15 11.7 0.8 0.31 10.7 0.8 1.5 1 0 0 1 1 1 0 GATA zinc finger DDE_Tnp_1_6 PF13751.6 gi|88601693|ref|YP_501871.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601693|ref|YP_501871.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601693|ref|YP_501871.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601693|ref|YP_501871.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain Polysacc_synt_3 PF13440.6 gi|88601694|ref|YP_501872.1| - 1.3e-24 86.9 7.9 1.3e-24 86.9 7.9 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|88601694|ref|YP_501872.1| - 2.7e-08 33.6 19.8 2.7e-08 33.6 19.8 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.20 gi|88601695|ref|YP_501873.1| - 7.5e-13 48.4 0.0 3.7e-12 46.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88601695|ref|YP_501873.1| - 1.9e-08 34.8 0.0 2.8e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 YozE_SAM_like PF06855.12 gi|88601695|ref|YP_501873.1| - 0.55 10.4 0.1 0.55 10.4 0.1 1.9 2 0 0 2 2 2 0 YozE SAM-like fold DUF5359 PF17313.2 gi|88601696|ref|YP_501874.1| - 0.055 13.5 1.3 0.16 12.0 1.3 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5359) Glycos_transf_1 PF00534.20 gi|88601697|ref|YP_501875.1| - 2.8e-12 46.5 0.0 5.8e-12 45.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88601697|ref|YP_501875.1| - 9.6e-10 39.0 0.0 1.6e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|88601697|ref|YP_501875.1| - 8.5e-06 26.1 0.0 3.4e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88601697|ref|YP_501875.1| - 3.5e-05 23.9 0.0 6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 3H PF02829.14 gi|88601697|ref|YP_501875.1| - 0.029 14.7 0.0 0.084 13.2 0.0 1.7 1 0 0 1 1 1 0 3H domain PMT_2 PF13231.6 gi|88601698|ref|YP_501876.1| - 0.004 17.4 19.5 0.004 17.4 19.5 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase YqfD PF06898.11 gi|88601698|ref|YP_501876.1| - 1.7 7.4 5.6 1.4 7.7 0.1 2.4 2 0 0 2 2 2 0 Putative stage IV sporulation protein YqfD Zn_Tnp_IS1 PF03811.13 gi|88601699|ref|YP_501877.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88601699|ref|YP_501877.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88601699|ref|YP_501877.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88601699|ref|YP_501877.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DDE_Tnp_IS1 PF03400.13 gi|88601700|ref|YP_501878.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88601700|ref|YP_501878.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88601700|ref|YP_501878.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Glycos_transf_1 PF00534.20 gi|88601701|ref|YP_501879.1| - 8.1e-39 132.9 0.2 3.3e-38 130.9 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88601701|ref|YP_501879.1| - 1e-28 100.4 0.0 1.6e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88601701|ref|YP_501879.1| - 2e-28 99.5 0.0 3.6e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|88601701|ref|YP_501879.1| - 9.9e-12 45.6 0.0 2.5e-11 44.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|88601701|ref|YP_501879.1| - 1.6e-11 44.4 0.0 3.4e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|88601701|ref|YP_501879.1| - 5e-10 39.5 1.3 4.4e-09 36.5 1.3 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_20 PF00982.21 gi|88601701|ref|YP_501879.1| - 5e-05 22.2 0.1 0.0006 18.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 20 Epimerase_2 PF02350.19 gi|88601702|ref|YP_501880.1| - 4.7e-123 410.5 0.0 5.4e-123 410.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|88601702|ref|YP_501880.1| - 0.0085 16.1 0.0 0.032 14.2 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|88601702|ref|YP_501880.1| - 0.1 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|88601702|ref|YP_501880.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) PIN PF01850.21 gi|88601703|ref|YP_501881.1| - 4.1e-09 37.0 0.2 4.6e-09 36.8 0.2 1.1 1 0 0 1 1 1 1 PIN domain HicB_lk_antitox PF15919.5 gi|88601704|ref|YP_501882.1| - 1.8e-12 47.4 0.0 2e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Arm-DNA-bind_1 PF09003.10 gi|88601704|ref|YP_501882.1| - 0.1 12.8 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda integrase, Arm DNA-binding domain HicA_toxin PF07927.12 gi|88601705|ref|YP_501883.1| - 8.7e-14 51.3 0.2 1e-13 51.1 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF4168 PF13767.6 gi|88601705|ref|YP_501883.1| - 0.044 15.0 0.0 0.061 14.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4168) PUB PF09409.10 gi|88601705|ref|YP_501883.1| - 0.085 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 PUB domain Glycos_transf_2 PF00535.26 gi|88601706|ref|YP_501884.1| - 1.9e-21 76.6 0.0 2.8e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88601706|ref|YP_501884.1| - 3.7e-05 23.7 0.0 5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|88601706|ref|YP_501884.1| - 0.047 14.2 0.0 0.082 13.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DAGK_prokar PF01219.19 gi|88601707|ref|YP_501885.1| - 1.3 8.8 10.7 8.4 6.3 10.7 2.0 1 1 0 1 1 1 0 Prokaryotic diacylglycerol kinase DUF4129 PF13559.6 gi|88601708|ref|YP_501886.1| - 6.2e-06 26.4 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) FapA PF03961.13 gi|88601708|ref|YP_501886.1| - 0.039 12.6 1.2 0.06 12.0 1.2 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A SdrD_B PF17210.3 gi|88601708|ref|YP_501886.1| - 0.071 13.3 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 SdrD B-like domain DUF4350 PF14258.6 gi|88601709|ref|YP_501887.1| - 7.9e-09 35.8 0.0 1.5e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|88601709|ref|YP_501887.1| - 0.011 15.3 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.11 gi|88601710|ref|YP_501888.1| - 1.2e-51 174.0 0.1 1.9e-51 173.3 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|88601710|ref|YP_501888.1| - 8.4e-21 73.6 0.3 4e-20 71.4 0.1 2.3 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|88601710|ref|YP_501888.1| - 5.6e-11 42.6 0.0 1.4e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|88601710|ref|YP_501888.1| - 6.5e-07 29.8 0.0 1.2e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|88601710|ref|YP_501888.1| - 0.00014 21.7 0.1 0.00046 20.0 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|88601710|ref|YP_501888.1| - 0.00045 19.4 0.1 0.001 18.3 0.1 1.6 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|88601710|ref|YP_501888.1| - 0.015 14.7 0.2 0.04 13.3 0.1 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|88601710|ref|YP_501888.1| - 0.03 14.0 0.0 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF58 PF01882.18 gi|88601711|ref|YP_501889.1| - 4.2e-14 52.6 0.0 7.5e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 CTC1_2 PF15491.6 gi|88601711|ref|YP_501889.1| - 0.17 11.1 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 DUF5423 PF17461.2 gi|88601711|ref|YP_501889.1| - 0.2 10.5 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5423) PHO4 PF01384.20 gi|88601712|ref|YP_501890.1| - 0.9 8.5 6.2 1.2 8.1 5.9 1.4 1 1 0 1 1 1 0 Phosphate transporter family DUF1616 PF07760.11 gi|88601715|ref|YP_501893.1| - 1.5e-104 349.5 0.1 1.8e-104 349.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4574 PF15141.6 gi|88601715|ref|YP_501893.1| - 0.21 11.5 0.0 0.5 10.3 0.0 1.6 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 AAA-ATPase_like PF09820.9 gi|88601716|ref|YP_501894.1| - 3.1e-82 276.2 4.4 3.1e-82 276.2 4.4 2.0 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601716|ref|YP_501894.1| - 6.5e-28 96.7 0.5 1.6e-27 95.5 0.5 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DAP3 PF10236.9 gi|88601716|ref|YP_501894.1| - 0.064 12.4 0.1 0.75 8.9 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PDDEXK_9 PF08011.11 gi|88601717|ref|YP_501895.1| - 0.00028 20.8 0.2 0.00047 20.0 0.2 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Gemini_AL1_M PF08283.11 gi|88601717|ref|YP_501895.1| - 0.1 12.7 0.3 0.24 11.5 0.2 1.7 2 0 0 2 2 2 0 Geminivirus rep protein central domain DDE_Tnp_1_6 PF13751.6 gi|88601718|ref|YP_501896.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601718|ref|YP_501896.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601718|ref|YP_501896.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601718|ref|YP_501896.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DUF4143 PF13635.6 gi|88601719|ref|YP_501897.1| - 3.2e-29 101.6 0.0 4.7e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_14 PF13173.6 gi|88601719|ref|YP_501897.1| - 9e-25 87.2 0.0 2.2e-24 85.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|88601719|ref|YP_501897.1| - 0.00026 21.3 0.0 0.3 11.3 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|88601719|ref|YP_501897.1| - 0.0048 17.3 0.0 0.02 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|88601719|ref|YP_501897.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|88601720|ref|YP_501898.1| - 1.5e-17 64.3 0.1 2.6e-15 57.0 0.1 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|88601720|ref|YP_501898.1| - 7e-16 58.5 0.2 2.6e-15 56.7 0.1 2.0 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|88601720|ref|YP_501898.1| - 6.2e-09 36.0 0.0 1.9e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88601720|ref|YP_501898.1| - 1.4e-07 32.1 0.1 2e-05 25.0 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|88601720|ref|YP_501898.1| - 0.0076 16.5 0.1 0.087 13.1 0.1 2.4 1 1 0 1 1 1 1 AAA domain NERD PF08378.11 gi|88601720|ref|YP_501898.1| - 0.024 15.1 0.0 0.059 13.8 0.0 1.7 1 0 0 1 1 1 0 Nuclease-related domain TniB PF05621.11 gi|88601720|ref|YP_501898.1| - 0.12 11.7 0.0 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein RNA12 PF10443.9 gi|88601720|ref|YP_501898.1| - 0.24 10.1 0.0 0.36 9.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein DUF772 PF05598.11 gi|88601721|ref|YP_501899.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88601721|ref|YP_501899.1| - 6.5e-11 42.5 0.0 6.5e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601721|ref|YP_501899.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88601721|ref|YP_501899.1| - 0.19 12.1 3.7 0.31 11.5 3.7 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88601721|ref|YP_501899.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 NosD PF05048.13 gi|88601722|ref|YP_501900.1| - 1.4e-39 135.8 24.0 7.2e-37 126.9 16.0 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|88601722|ref|YP_501900.1| - 1.9e-14 53.8 33.9 1e-08 35.2 14.1 3.3 2 1 0 3 3 3 2 Right handed beta helix region PKD PF00801.20 gi|88601722|ref|YP_501900.1| - 1.9e-09 37.2 0.1 7.1e-09 35.4 0.1 2.1 1 0 0 1 1 1 1 PKD domain PKD PF00801.20 gi|88601723|ref|YP_501901.1| - 8.4e-10 38.4 0.6 2.1e-09 37.1 0.6 1.7 1 0 0 1 1 1 1 PKD domain Arylsulfotrans PF05935.11 gi|88601723|ref|YP_501901.1| - 6.1e-06 25.4 6.5 0.0023 16.9 0.5 2.9 1 1 2 3 3 3 2 Arylsulfotransferase (ASST) PqqD PF05402.12 gi|88601723|ref|YP_501901.1| - 1.3e-05 25.4 5.9 2.8 8.3 0.0 6.0 6 0 0 6 6 6 2 Coenzyme PQQ synthesis protein D (PqqD) GramPos_pilinD3 PF16570.5 gi|88601723|ref|YP_501901.1| - 0.00012 22.9 10.4 0.41 11.4 0.3 5.0 1 1 4 5 5 5 3 Gram-positive pilin backbone subunit 3, Cna-B-like domain Ceramidase_alk PF04734.13 gi|88601723|ref|YP_501901.1| - 0.0078 14.9 0.4 7.6 5.1 0.0 4.0 3 1 1 4 4 4 1 Neutral/alkaline non-lysosomal ceramidase, N-terminal DUF5122 PF17164.4 gi|88601723|ref|YP_501901.1| - 9.4 6.6 38.5 4.1 7.8 0.7 7.2 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller AAA-ATPase_like PF09820.9 gi|88601724|ref|YP_501902.1| - 8.9e-85 284.5 5.7 1.5e-84 283.7 5.7 1.4 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601724|ref|YP_501902.1| - 8.7e-26 89.9 0.5 1.7e-25 89.0 0.5 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DivIVA PF05103.13 gi|88601724|ref|YP_501902.1| - 0.054 13.6 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 DivIVA protein PKD PF00801.20 gi|88601725|ref|YP_501903.1| - 1.7e-73 242.4 52.1 1.6e-14 53.5 3.1 7.5 7 0 0 7 7 7 6 PKD domain Lectin_like PF18560.1 gi|88601725|ref|YP_501903.1| - 1.4e-49 168.2 0.3 1.1e-48 165.4 0.1 2.5 2 0 0 2 2 2 1 Lectin like domain Peptidase_C1 PF00112.23 gi|88601725|ref|YP_501903.1| - 2.7e-21 76.7 1.0 4.5e-21 76.0 1.0 1.3 1 0 0 1 1 1 1 Papain family cysteine protease MG2 PF01835.19 gi|88601725|ref|YP_501903.1| - 4e-05 24.0 10.9 1.7 9.1 0.1 6.3 5 1 2 7 7 7 3 MG2 domain PKD_3 PF16820.5 gi|88601725|ref|YP_501903.1| - 0.0019 17.9 10.0 14 5.5 0.0 5.9 6 0 0 6 6 6 2 PKD-like domain PKD PF00801.20 gi|88601726|ref|YP_501904.1| - 1.9e-47 159.0 41.6 9.5e-08 31.8 0.2 9.8 10 0 0 10 10 10 8 PKD domain PKD_3 PF16820.5 gi|88601726|ref|YP_501904.1| - 0.25 11.1 0.0 0.25 11.1 0.0 6.3 8 0 0 8 8 8 0 PKD-like domain TcfC PF16967.5 gi|88601726|ref|YP_501904.1| - 0.38 10.3 6.0 7.8 6.1 0.0 4.3 4 0 0 4 4 4 0 E-set like domain PKD PF00801.20 gi|88601727|ref|YP_501905.1| - 4.6e-41 138.5 13.6 3.7e-11 42.7 0.4 5.1 4 0 0 4 4 4 4 PKD domain Y_Y_Y PF07495.13 gi|88601727|ref|YP_501905.1| - 0.0019 18.1 5.3 4.2 7.4 0.0 4.3 4 0 0 4 4 4 2 Y_Y_Y domain PKD_3 PF16820.5 gi|88601727|ref|YP_501905.1| - 0.0073 16.0 4.7 1.8 8.4 0.0 4.6 4 0 0 4 4 4 1 PKD-like domain SusF_SusE PF16411.5 gi|88601727|ref|YP_501905.1| - 0.017 15.7 0.0 0.67 10.5 0.0 3.1 2 2 0 2 2 2 0 Outer membrane protein SusF_SusE FlgD_ig PF13860.6 gi|88601727|ref|YP_501905.1| - 0.35 10.7 3.0 12 5.9 0.0 3.9 4 0 0 4 4 4 0 FlgD Ig-like domain DUF3821 PF12863.7 gi|88601728|ref|YP_501906.1| - 5.2e-55 186.6 0.8 5.2e-55 186.6 0.8 3.9 4 0 0 4 4 4 2 Domain of unknown function (DUF3821) PKD PF00801.20 gi|88601728|ref|YP_501906.1| - 8.5e-34 115.2 23.0 2.3e-13 49.8 2.9 4.6 4 0 0 4 4 4 3 PKD domain Y_Y_Y PF07495.13 gi|88601728|ref|YP_501906.1| - 0.00017 21.5 3.7 0.057 13.4 0.0 4.2 3 0 0 3 3 3 2 Y_Y_Y domain PKD_3 PF16820.5 gi|88601728|ref|YP_501906.1| - 0.0018 18.0 4.2 0.22 11.3 0.2 3.5 3 0 0 3 3 3 2 PKD-like domain DUF3821 PF12863.7 gi|88601729|ref|YP_501907.1| - 3.1e-50 171.0 3.2 3.1e-50 171.0 3.2 3.9 4 2 0 4 4 4 1 Domain of unknown function (DUF3821) PKD PF00801.20 gi|88601729|ref|YP_501907.1| - 9.3e-39 131.1 31.2 8.5e-14 51.2 2.0 6.2 6 0 0 6 6 6 4 PKD domain PKD_3 PF16820.5 gi|88601729|ref|YP_501907.1| - 7.6e-05 22.4 15.6 0.01 15.5 0.2 5.3 5 1 0 5 5 5 2 PKD-like domain MG2 PF01835.19 gi|88601729|ref|YP_501907.1| - 0.011 16.1 8.9 9.1 6.8 0.1 5.9 6 0 0 6 6 6 0 MG2 domain Y_Y_Y PF07495.13 gi|88601729|ref|YP_501907.1| - 0.017 15.0 6.8 15 5.7 0.1 5.3 5 0 0 5 5 5 0 Y_Y_Y domain BiPBP_C PF06832.12 gi|88601729|ref|YP_501907.1| - 0.04 14.0 0.1 3.1 7.9 0.0 3.4 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family DUF4625 PF15418.6 gi|88601729|ref|YP_501907.1| - 0.084 13.1 0.3 11 6.2 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4625) DUF5011 PF16403.5 gi|88601729|ref|YP_501907.1| - 1.3 9.2 23.5 4.3 7.5 0.4 5.9 6 0 0 6 6 6 0 Domain of unknown function (DUF5011) DUF3821 PF12863.7 gi|88601730|ref|YP_501908.1| - 1.2e-65 221.3 8.7 8.7e-64 215.2 0.4 3.5 3 1 0 3 3 3 2 Domain of unknown function (DUF3821) PKD PF00801.20 gi|88601730|ref|YP_501908.1| - 2.7e-19 68.8 7.0 2.4e-10 40.1 0.2 3.6 3 0 0 3 3 3 2 PKD domain Malic_M PF03949.15 gi|88601730|ref|YP_501908.1| - 0.067 12.4 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Big_7 PF17957.1 gi|88601730|ref|YP_501908.1| - 0.22 12.3 2.1 5.6 7.8 0.1 4.1 4 0 0 4 4 4 0 Bacterial Ig domain MBG PF17883.1 gi|88601730|ref|YP_501908.1| - 4 8.1 9.4 15 6.2 0.3 3.8 4 0 0 4 4 4 0 MBG domain PKD PF00801.20 gi|88601731|ref|YP_501909.1| - 9.8e-24 83.0 18.0 7.3e-13 48.2 1.9 3.8 5 0 0 5 5 5 2 PKD domain Polbeta PF18765.1 gi|88601733|ref|YP_501911.1| - 6.3e-15 55.0 0.0 1e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88601733|ref|YP_501911.1| - 1e-08 35.4 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|88601733|ref|YP_501911.1| - 0.028 14.3 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF86 PF01934.17 gi|88601734|ref|YP_501912.1| - 1.2e-16 60.6 1.3 1.5e-16 60.4 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 HEPN_RiboL-PSP PF18735.1 gi|88601734|ref|YP_501912.1| - 0.0026 17.7 1.9 0.003 17.5 1.9 1.3 1 1 0 1 1 1 1 RiboL-PSP-HEPN NTase_sub_bind PF08780.11 gi|88601734|ref|YP_501912.1| - 0.014 15.3 2.4 0.021 14.8 2.4 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like DUF4145 PF13643.6 gi|88601734|ref|YP_501912.1| - 0.023 14.8 0.1 0.057 13.5 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4145) Abhydrolase_1 PF00561.20 gi|88601735|ref|YP_501913.1| - 9.7e-19 68.0 0.3 1.6e-09 37.8 0.0 3.0 2 1 1 3 3 3 3 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|88601735|ref|YP_501913.1| - 4.9e-15 56.7 0.0 5.8e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|88601735|ref|YP_501913.1| - 7.9e-13 48.2 0.0 1.7e-12 47.2 0.0 1.5 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|88601735|ref|YP_501913.1| - 2e-05 24.7 0.0 4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein PGAP1 PF07819.13 gi|88601735|ref|YP_501913.1| - 0.00039 20.2 0.1 0.0058 16.4 0.0 2.2 2 0 0 2 2 2 1 PGAP1-like protein Thioesterase PF00975.20 gi|88601735|ref|YP_501913.1| - 0.001 19.3 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Esterase PF00756.20 gi|88601735|ref|YP_501913.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 gi|88601735|ref|YP_501913.1| - 0.0067 15.9 0.0 0.03 13.8 0.0 1.9 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF915 PF06028.11 gi|88601735|ref|YP_501913.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) FSH1 PF03959.13 gi|88601735|ref|YP_501913.1| - 0.011 15.5 0.0 0.026 14.2 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.14 gi|88601735|ref|YP_501913.1| - 0.023 13.4 0.0 0.074 11.7 0.0 1.8 1 1 0 1 1 1 0 Ndr family Abhydrolase_2 PF02230.16 gi|88601735|ref|YP_501913.1| - 0.044 13.6 0.0 0.085 12.6 0.0 1.4 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase DLH PF01738.18 gi|88601735|ref|YP_501913.1| - 0.2 11.2 0.0 0.94 9.0 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family TIG PF01833.24 gi|88601736|ref|YP_501914.1| - 3.3e-11 43.1 32.3 0.00014 21.8 2.0 6.1 5 1 0 5 5 5 5 IPT/TIG domain MG2 PF01835.19 gi|88601736|ref|YP_501914.1| - 2.1e-08 34.5 0.0 2 9.0 0.0 4.4 4 0 0 4 4 4 4 MG2 domain Peptidase_M10 PF00413.24 gi|88601736|ref|YP_501914.1| - 0.021 14.7 0.0 0.046 13.6 0.0 1.6 1 0 0 1 1 1 0 Matrixin Hjc PF01870.18 gi|88601737|ref|YP_501915.1| - 3.5e-05 23.7 0.1 0.00091 19.2 0.0 2.3 1 1 1 2 2 2 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|88601737|ref|YP_501915.1| - 7.8e-05 22.2 0.1 0.00015 21.3 0.1 1.7 1 1 0 1 1 1 1 REase_AHJR-like UPF0102 PF02021.17 gi|88601737|ref|YP_501915.1| - 0.00016 21.8 0.0 0.00028 21.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 PDDEXK_10 PF07788.11 gi|88601737|ref|YP_501915.1| - 0.0028 17.5 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3883 PF13020.6 gi|88601737|ref|YP_501915.1| - 0.015 15.3 0.2 0.047 13.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3883) Neisseria_PilC PF05567.11 gi|88601737|ref|YP_501915.1| - 0.015 14.3 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 Neisseria PilC beta-propeller domain DUF234 PF03008.14 gi|88601737|ref|YP_501915.1| - 0.024 15.1 0.2 0.038 14.4 0.2 1.4 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function DUF4143 PF13635.6 gi|88601737|ref|YP_501915.1| - 0.036 14.2 0.1 0.056 13.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DUF3157 PF11355.8 gi|88601737|ref|YP_501915.1| - 0.042 13.5 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3157) ABC_tran PF00005.27 gi|88601738|ref|YP_501916.1| - 1.1e-38 132.9 0.0 7.7e-19 68.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|88601738|ref|YP_501916.1| - 1.9e-14 53.7 5.6 0.00012 21.5 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|88601738|ref|YP_501916.1| - 3.3e-11 43.6 6.0 0.051 13.4 0.0 4.4 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|88601738|ref|YP_501916.1| - 5.4e-09 35.7 1.7 1.2e-08 34.6 1.7 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|88601738|ref|YP_501916.1| - 5e-08 32.4 4.7 5e-08 32.4 4.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88601738|ref|YP_501916.1| - 7.2e-07 29.0 10.8 1.4e-05 24.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88601738|ref|YP_501916.1| - 4e-05 23.7 8.1 6.6e-05 23.0 8.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|88601738|ref|YP_501916.1| - 0.00012 21.8 0.9 0.29 10.8 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|88601738|ref|YP_501916.1| - 0.00017 22.0 0.2 1.7 9.0 0.0 3.2 2 1 1 3 3 3 2 AAA ATPase domain AAA_15 PF13175.6 gi|88601738|ref|YP_501916.1| - 0.00019 21.3 0.3 0.79 9.4 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|88601738|ref|YP_501916.1| - 0.00024 21.4 1.2 0.13 12.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain Fer4_2 PF12797.7 gi|88601738|ref|YP_501916.1| - 0.0006 19.7 1.2 0.0006 19.7 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|88601738|ref|YP_501916.1| - 0.00064 19.7 0.6 0.61 10.0 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase Fer4_7 PF12838.7 gi|88601738|ref|YP_501916.1| - 0.00067 20.2 6.2 0.0019 18.8 6.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88601738|ref|YP_501916.1| - 0.0011 19.0 6.2 0.0029 17.8 6.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|88601738|ref|YP_501916.1| - 0.0015 18.9 0.2 3.6 8.0 0.0 2.7 3 0 0 3 3 2 2 RNA helicase Fer4_10 PF13237.6 gi|88601738|ref|YP_501916.1| - 0.0017 18.4 1.4 0.0017 18.4 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain NB-ARC PF00931.22 gi|88601738|ref|YP_501916.1| - 0.0029 16.8 0.1 2.2 7.4 0.1 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_29 PF13555.6 gi|88601738|ref|YP_501916.1| - 0.0065 16.2 1.2 3.1 7.6 0.2 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|88601738|ref|YP_501916.1| - 0.011 15.9 0.1 5.7 7.3 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|88601738|ref|YP_501916.1| - 0.035 14.1 0.2 31 4.6 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|88601738|ref|YP_501916.1| - 0.039 13.5 1.1 2.5 7.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|88601738|ref|YP_501916.1| - 0.039 14.4 0.2 13 6.2 0.0 2.8 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|88601738|ref|YP_501916.1| - 0.053 13.8 0.2 5.5 7.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|88601738|ref|YP_501916.1| - 0.054 13.7 0.2 2.9 8.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|88601738|ref|YP_501916.1| - 0.23 11.3 3.0 1.6 8.7 0.1 2.5 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|88601738|ref|YP_501916.1| - 0.33 11.0 3.6 3.1 7.9 0.3 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase MukB PF04310.12 gi|88601738|ref|YP_501916.1| - 0.44 10.3 1.6 1.1 9.0 0.0 2.2 3 0 0 3 3 2 0 MukB N-terminal DUF87 PF01935.17 gi|88601738|ref|YP_501916.1| - 0.74 9.9 5.9 10 6.1 0.6 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain Fer4_4 PF12800.7 gi|88601738|ref|YP_501916.1| - 0.82 10.3 12.0 0.25 12.0 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88601738|ref|YP_501916.1| - 0.91 10.5 9.2 0.11 13.4 2.3 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_23 PF13476.6 gi|88601738|ref|YP_501916.1| - 1.6 9.2 5.9 9.9 6.6 0.1 2.6 2 1 0 2 2 2 0 AAA domain Fer4_8 PF13183.6 gi|88601738|ref|YP_501916.1| - 2.1 8.8 6.1 1.1 9.7 2.3 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88601738|ref|YP_501916.1| - 2.9 8.8 5.8 0.69 10.8 2.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601738|ref|YP_501916.1| - 4.2 8.0 8.9 25 5.5 8.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF3899 PF13038.6 gi|88601739|ref|YP_501917.1| - 0.076 13.5 3.0 0.74 10.4 0.2 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF3899) FbpA PF05833.11 gi|88601740|ref|YP_501918.1| - 9.6e-55 186.1 0.0 1.3e-54 185.7 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|88601740|ref|YP_501918.1| - 1.3e-23 83.8 0.0 1.2e-22 80.6 0.0 2.4 2 0 0 2 2 2 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|88601740|ref|YP_501918.1| - 0.00021 21.4 0.0 0.00056 20.1 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain Glyco_transf_17 PF04724.13 gi|88601740|ref|YP_501918.1| - 0.046 12.8 0.0 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 17 DUF669 PF05037.13 gi|88601740|ref|YP_501918.1| - 0.074 13.2 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF669) eRF1_1 PF03463.15 gi|88601741|ref|YP_501919.1| - 4.7e-25 88.1 0.0 7e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|88601741|ref|YP_501919.1| - 2e-18 66.9 0.0 1.2e-17 64.5 0.0 2.3 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|88601741|ref|YP_501919.1| - 0.0076 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 DDE_Tnp_1_6 PF13751.6 gi|88601742|ref|YP_501920.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601742|ref|YP_501920.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601742|ref|YP_501920.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601742|ref|YP_501920.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain PAS_9 PF13426.7 gi|88601743|ref|YP_501921.1| - 1.9e-23 82.7 0.0 1.7e-09 37.9 0.0 4.4 4 1 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|88601743|ref|YP_501921.1| - 4.2e-23 81.7 0.0 5.6e-10 39.4 0.0 5.2 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|88601743|ref|YP_501921.1| - 8.2e-22 77.3 0.0 2.3e-09 37.2 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|88601743|ref|YP_501921.1| - 1.7e-14 53.4 0.0 2.9e-05 24.0 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|88601743|ref|YP_501921.1| - 5.8e-14 52.2 0.0 7.4e-08 32.6 0.0 3.5 4 0 0 4 4 4 2 PAS fold Spectrin PF00435.21 gi|88601743|ref|YP_501921.1| - 0.03 14.8 0.1 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 Spectrin repeat PAS_10 PF13596.6 gi|88601743|ref|YP_501921.1| - 0.053 14.1 0.1 40 4.9 0.0 3.8 3 0 0 3 3 3 0 PAS domain HisKA PF00512.25 gi|88601743|ref|YP_501921.1| - 0.11 12.6 0.0 0.47 10.5 0.0 2.2 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Exo_endo_phos PF03372.23 gi|88601744|ref|YP_501922.1| - 9.9e-21 74.3 0.0 1.2e-20 74.1 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|88601744|ref|YP_501922.1| - 0.087 12.7 0.0 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Endonuclease-reverse transcriptase AP_endonuc_2 PF01261.24 gi|88601745|ref|YP_501923.1| - 3.4e-07 29.9 0.0 5.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1858 PF08984.11 gi|88601746|ref|YP_501924.1| - 4.3e-17 62.0 0.0 4.7e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) ScdA_N PF04405.14 gi|88601746|ref|YP_501924.1| - 0.038 13.7 0.2 0.28 10.9 0.2 1.9 1 1 0 1 1 1 0 Domain of Unknown function (DUF542) HTH_28 PF13518.6 gi|88601746|ref|YP_501924.1| - 0.096 12.8 0.5 0.31 11.2 0.2 1.9 2 1 1 3 3 3 0 Helix-turn-helix domain MCH PF02289.16 gi|88601747|ref|YP_501925.1| - 2.6e-136 454.0 0.0 2.9e-136 453.8 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) AAA_16 PF13191.6 gi|88601748|ref|YP_501926.1| - 9.9e-09 35.8 0.1 7.7e-07 29.6 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|88601748|ref|YP_501926.1| - 1.1e-08 35.5 0.1 2.9e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain Cdc6_C PF09079.11 gi|88601748|ref|YP_501926.1| - 1.7e-05 24.7 0.2 0.00012 22.0 0.2 2.3 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain NB-ARC PF00931.22 gi|88601748|ref|YP_501926.1| - 0.00015 21.0 0.0 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|88601748|ref|YP_501926.1| - 0.018 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|88601748|ref|YP_501926.1| - 0.018 15.4 0.1 0.043 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|88601748|ref|YP_501926.1| - 0.019 14.2 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|88601748|ref|YP_501926.1| - 0.029 14.2 0.2 0.076 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|88601748|ref|YP_501926.1| - 0.029 13.9 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Viral_helicase1 PF01443.18 gi|88601748|ref|YP_501926.1| - 0.03 14.1 0.1 0.048 13.4 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|88601748|ref|YP_501926.1| - 0.034 13.9 1.0 0.11 12.2 0.3 2.0 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|88601748|ref|YP_501926.1| - 0.038 14.4 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|88601748|ref|YP_501926.1| - 0.066 12.1 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|88601748|ref|YP_501926.1| - 0.091 13.0 0.1 0.49 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|88601748|ref|YP_501926.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|88601748|ref|YP_501926.1| - 0.19 11.6 0.7 0.4 10.6 0.3 1.8 2 0 0 2 2 2 0 NTPase DUF368 PF04018.13 gi|88601749|ref|YP_501927.1| - 5.2e-64 216.2 18.3 5.2e-64 216.2 18.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF368) PhosphMutase PF10143.9 gi|88601750|ref|YP_501928.1| - 1.1e-55 188.2 0.0 1.7e-55 187.5 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|88601750|ref|YP_501928.1| - 1.3e-35 122.9 0.0 1.7e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|88601750|ref|YP_501928.1| - 0.00024 20.8 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Epimerase PF01370.21 gi|88601751|ref|YP_501929.1| - 2.7e-48 164.6 0.0 3.3e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88601751|ref|YP_501929.1| - 1e-46 159.9 0.0 1.3e-46 159.5 0.0 1.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|88601751|ref|YP_501929.1| - 8.8e-17 61.0 0.0 1.1e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|88601751|ref|YP_501929.1| - 3.3e-15 56.0 0.0 3.3e-14 52.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|88601751|ref|YP_501929.1| - 2.1e-13 50.0 0.0 3.1e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|88601751|ref|YP_501929.1| - 2e-09 37.0 0.4 6.5e-07 28.8 0.4 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|88601751|ref|YP_501929.1| - 3.1e-08 33.7 0.0 4.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|88601751|ref|YP_501929.1| - 4.6e-05 23.0 0.5 0.062 12.8 0.0 2.7 2 1 0 2 2 2 2 short chain dehydrogenase NmrA PF05368.13 gi|88601751|ref|YP_501929.1| - 0.0025 17.4 0.0 0.027 14.0 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|88601751|ref|YP_501929.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 KR domain POR PF01558.18 gi|88601753|ref|YP_501931.1| - 5.9e-40 137.2 0.4 7.4e-40 136.9 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|88601754|ref|YP_501932.1| - 2.7e-14 52.3 18.4 1.2e-07 31.3 2.3 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88601754|ref|YP_501932.1| - 6.1e-11 41.7 10.8 4.4e-06 26.5 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88601754|ref|YP_501932.1| - 1.4e-10 40.7 15.9 1.9e-06 27.7 4.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88601754|ref|YP_501932.1| - 2.6e-10 40.7 11.8 2.1e-05 25.0 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88601754|ref|YP_501932.1| - 3.3e-10 39.9 26.8 2.1e-07 30.9 13.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88601754|ref|YP_501932.1| - 5.5e-09 36.0 24.3 7.7e-07 29.1 14.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88601754|ref|YP_501932.1| - 1.9e-08 35.1 12.8 0.00023 22.1 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88601754|ref|YP_501932.1| - 2.5e-07 30.7 28.8 7.8e-06 26.0 15.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88601754|ref|YP_501932.1| - 1.5e-05 25.6 11.3 0.019 15.7 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|88601754|ref|YP_501932.1| - 1.8e-05 25.1 12.2 0.0055 17.1 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601754|ref|YP_501932.1| - 0.00038 20.9 15.6 0.084 13.4 3.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88601754|ref|YP_501932.1| - 0.0014 19.1 10.4 0.014 15.9 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88601754|ref|YP_501932.1| - 0.018 15.9 14.8 0.21 12.5 1.7 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88601754|ref|YP_501932.1| - 0.085 13.4 19.0 3.2e+02 2.2 16.5 2.6 2 1 0 2 2 1 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88601754|ref|YP_501932.1| - 0.35 11.9 26.6 0.35 11.9 5.9 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88601754|ref|YP_501932.1| - 0.57 10.4 9.7 1.6 9.0 9.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|88601755|ref|YP_501933.1| - 3.5e-68 229.8 0.0 4.8e-68 229.4 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|88601755|ref|YP_501933.1| - 7.6e-36 122.5 0.4 1.5e-35 121.6 0.4 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|88601755|ref|YP_501933.1| - 4.4e-07 29.8 0.1 9.5e-07 28.7 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain GTP_EFTU_D4 PF14578.6 gi|88601755|ref|YP_501933.1| - 0.11 12.5 0.2 0.26 11.2 0.2 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 4 TPP_enzyme_C PF02775.21 gi|88601756|ref|YP_501934.1| - 1e-27 96.8 0.0 2.2e-27 95.7 0.0 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HisKA_2 PF07568.12 gi|88601757|ref|YP_501935.1| - 1.9e-24 85.5 0.1 4.9e-24 84.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.24 gi|88601757|ref|YP_501935.1| - 8.5e-24 83.9 0.0 7.3e-23 80.9 0.1 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|88601757|ref|YP_501935.1| - 5.4e-09 36.1 0.0 1.4e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|88601757|ref|YP_501935.1| - 7.1e-08 32.7 0.0 2e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 gi|88601757|ref|YP_501935.1| - 3.9e-06 27.4 0.1 1.5e-05 25.4 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|88601757|ref|YP_501935.1| - 6.1e-06 26.9 0.0 1.3e-05 25.8 0.0 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_8 PF13188.7 gi|88601757|ref|YP_501935.1| - 6.7e-05 22.8 0.0 0.00026 20.9 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|88601757|ref|YP_501935.1| - 0.0003 21.0 0.0 0.00063 20.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|88601757|ref|YP_501935.1| - 0.00033 20.9 0.0 0.00061 20.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|88601757|ref|YP_501935.1| - 0.024 14.6 0.0 0.06 13.3 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|88601757|ref|YP_501935.1| - 0.043 13.5 0.2 0.49 10.1 0.4 2.5 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_12 PF18095.1 gi|88601757|ref|YP_501935.1| - 0.081 12.6 0.1 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain Response_reg PF00072.24 gi|88601758|ref|YP_501936.1| - 1e-22 80.4 0.2 1.4e-22 79.9 0.2 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Acetyltransf_10 PF13673.7 gi|88601759|ref|YP_501937.1| - 1.1e-09 38.2 0.0 1.5e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88601759|ref|YP_501937.1| - 1.2e-09 38.4 0.0 1.5e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88601759|ref|YP_501937.1| - 3e-08 34.0 0.0 4e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|88601759|ref|YP_501937.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88601759|ref|YP_501937.1| - 0.023 14.7 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein DUF1848 PF08902.11 gi|88601760|ref|YP_501938.1| - 9.7e-91 304.2 0.0 1.1e-90 303.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) zf-AN1 PF01428.16 gi|88601761|ref|YP_501939.1| - 2.1e-12 47.0 4.7 4.8e-12 45.8 4.9 1.5 1 1 1 2 2 2 1 AN1-like Zinc finger zinc_ribbon_2 PF13240.6 gi|88601761|ref|YP_501939.1| - 0.015 15.0 5.5 0.015 15.0 5.5 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|88601761|ref|YP_501939.1| - 0.043 13.7 2.3 0.073 13.0 2.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 FYVE PF01363.21 gi|88601761|ref|YP_501939.1| - 0.061 13.5 1.2 0.077 13.1 1.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF2175 PF09943.9 gi|88601761|ref|YP_501939.1| - 0.26 11.6 1.8 0.44 10.9 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) C1_2 PF03107.16 gi|88601761|ref|YP_501939.1| - 0.89 9.9 6.6 0.34 11.3 4.1 1.6 1 1 0 1 1 1 0 C1 domain zf-C2H2_4 PF13894.6 gi|88601761|ref|YP_501939.1| - 1 10.4 5.8 3.5 8.7 1.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-BED PF02892.15 gi|88601761|ref|YP_501939.1| - 1.6 8.8 7.9 2.2e+02 2.0 7.9 2.5 1 1 0 1 1 1 0 BED zinc finger DUF3821 PF12863.7 gi|88601762|ref|YP_501940.1| - 6.3e-78 261.5 0.0 8e-78 261.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) ADP_ribosyl_GH PF03747.14 gi|88601763|ref|YP_501941.1| - 6.6e-33 114.7 0.0 4.6e-32 111.9 0.0 1.9 1 1 0 1 1 1 1 ADP-ribosylglycohydrolase ABC_tran PF00005.27 gi|88601764|ref|YP_501942.1| - 9.8e-24 84.4 0.0 1.5e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88601764|ref|YP_501942.1| - 1e-06 28.8 0.1 0.0013 18.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88601764|ref|YP_501942.1| - 3.5e-05 23.5 0.1 7e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|88601764|ref|YP_501942.1| - 5.8e-05 22.6 0.1 0.019 14.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88601764|ref|YP_501942.1| - 0.001 19.6 0.1 0.002 18.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|88601764|ref|YP_501942.1| - 0.0017 18.1 0.4 0.098 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|88601764|ref|YP_501942.1| - 0.0084 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|88601764|ref|YP_501942.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|88601764|ref|YP_501942.1| - 0.051 13.2 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|88601764|ref|YP_501942.1| - 0.17 12.3 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|88601764|ref|YP_501942.1| - 0.19 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DAP3 PF10236.9 gi|88601764|ref|YP_501942.1| - 0.25 10.5 0.0 0.37 9.9 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Putative_PNPOx PF01243.20 gi|88601765|ref|YP_501943.1| - 3.1e-17 62.5 0.0 3.9e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PAS_3 PF08447.12 gi|88601766|ref|YP_501944.1| - 2.7e-11 43.6 0.0 1.3e-06 28.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|88601766|ref|YP_501944.1| - 1.4e-09 38.2 0.0 1e-05 25.7 0.0 3.5 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|88601766|ref|YP_501944.1| - 2.6e-09 37.1 0.0 0.00067 19.6 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|88601766|ref|YP_501944.1| - 4.7e-06 26.6 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|88601766|ref|YP_501944.1| - 6.7e-06 26.3 0.0 0.026 14.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|88601766|ref|YP_501944.1| - 0.00021 21.8 0.0 0.0009 19.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88601766|ref|YP_501944.1| - 0.013 15.5 0.1 65 3.7 0.0 4.0 3 1 1 4 4 4 0 PAS domain MFS_1 PF07690.16 gi|88601767|ref|YP_501945.1| - 7.7e-44 150.0 46.4 2.5e-29 102.3 31.0 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88601767|ref|YP_501945.1| - 0.00036 19.5 16.0 0.00036 19.5 16.0 3.7 2 2 1 3 3 3 1 Sugar (and other) transporter TRI12 PF06609.13 gi|88601767|ref|YP_501945.1| - 0.019 13.4 10.5 0.0053 15.2 4.2 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) Otopetrin PF03189.13 gi|88601767|ref|YP_501945.1| - 0.1 11.4 2.9 0.24 10.2 2.9 1.6 1 0 0 1 1 1 0 Otopetrin DUF5385 PF17359.2 gi|88601767|ref|YP_501945.1| - 0.57 9.7 0.9 1.3 8.5 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5385) PK PF00224.21 gi|88601768|ref|YP_501946.1| - 6e-96 321.4 0.0 9.6e-96 320.7 0.0 1.3 2 0 0 2 2 2 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|88601768|ref|YP_501946.1| - 1.8e-30 105.6 0.0 5.6e-30 104.0 0.0 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|88601768|ref|YP_501946.1| - 0.00055 19.1 0.3 0.0034 16.5 0.2 2.3 3 0 0 3 3 3 1 HpcH/HpaI aldolase/citrate lyase family Fe_dep_repr_C PF02742.15 gi|88601769|ref|YP_501947.1| - 1.4e-20 73.1 0.3 1e-19 70.3 0.5 2.1 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|88601769|ref|YP_501947.1| - 4.3e-11 42.9 0.4 8.4e-11 42.0 0.4 1.5 1 0 0 1 1 1 1 FeoA domain ANAPC2 PF08672.11 gi|88601769|ref|YP_501947.1| - 0.064 13.8 0.0 0.36 11.4 0.0 2.3 3 0 0 3 3 3 0 Anaphase promoting complex (APC) subunit 2 FeoB_N PF02421.18 gi|88601770|ref|YP_501948.1| - 5.7e-50 168.9 0.8 1.7e-49 167.4 0.2 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.14 gi|88601770|ref|YP_501948.1| - 1.6e-25 89.5 19.7 8.1e-13 48.6 4.5 3.0 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|88601770|ref|YP_501948.1| - 1.2e-17 64.0 0.0 2.1e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|88601770|ref|YP_501948.1| - 1.1e-09 37.8 3.9 1.1e-09 37.8 3.9 3.5 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|88601770|ref|YP_501948.1| - 0.47 10.3 1.7 0.45 10.4 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase Aldedh PF00171.22 gi|88601771|ref|YP_501949.1| - 1.5e-139 465.5 0.0 1.8e-139 465.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family CAP PF00188.26 gi|88601773|ref|YP_501951.1| - 1.2e-13 52.0 0.0 2.3e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CARDB PF07705.11 gi|88601773|ref|YP_501951.1| - 0.053 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 CARDB EII-Sor PF03609.14 gi|88601773|ref|YP_501951.1| - 0.13 11.6 1.3 0.22 10.9 1.3 1.2 1 0 0 1 1 1 0 PTS system sorbose-specific iic component PreAtp-grasp PF18604.1 gi|88601773|ref|YP_501951.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Pre ATP-grasp domain HATPase_c PF02518.26 gi|88601774|ref|YP_501952.1| - 1.6e-08 35.0 0.0 3.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88601774|ref|YP_501952.1| - 0.0054 16.7 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|88601774|ref|YP_501952.1| - 0.0092 15.6 0.2 0.015 14.9 0.2 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|88601774|ref|YP_501952.1| - 0.055 13.3 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88601774|ref|YP_501952.1| - 0.18 11.8 0.1 0.4 10.7 0.1 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HAD_2 PF13419.6 gi|88601775|ref|YP_501953.1| - 3.5e-21 76.1 0.0 4.8e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|88601775|ref|YP_501953.1| - 2.9e-11 44.1 0.0 2.3e-09 37.9 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|88601775|ref|YP_501953.1| - 6e-06 26.2 0.0 1.8e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|88601775|ref|YP_501953.1| - 0.00044 20.7 0.1 0.00067 20.1 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|88601775|ref|YP_501953.1| - 0.019 15.1 0.0 0.05 13.7 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|88601775|ref|YP_501953.1| - 0.083 12.7 0.5 0.6 9.9 0.5 2.0 1 1 0 1 1 1 0 Acid Phosphatase DUF1340 PF07067.11 gi|88601775|ref|YP_501953.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1340) HTH_17 PF12728.7 gi|88601776|ref|YP_501954.1| - 4.4e-10 39.6 0.2 9e-10 38.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RHH_1 PF01402.21 gi|88601776|ref|YP_501954.1| - 1.9e-05 24.4 0.9 0.002 18.0 0.1 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_3 PF01381.22 gi|88601776|ref|YP_501954.1| - 0.0078 16.3 0.4 0.043 13.9 0.3 2.2 2 1 0 2 2 2 1 Helix-turn-helix DUF134 PF02001.16 gi|88601776|ref|YP_501954.1| - 0.01 16.4 0.1 0.019 15.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|88601776|ref|YP_501954.1| - 0.02 14.5 0.1 0.047 13.4 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RHH_4 PF13467.6 gi|88601776|ref|YP_501954.1| - 0.023 14.6 0.1 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix domain HTH_24 PF13412.6 gi|88601776|ref|YP_501954.1| - 0.055 13.0 0.2 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|88601776|ref|YP_501954.1| - 0.055 13.8 0.1 0.15 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|88601776|ref|YP_501954.1| - 0.06 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family RWP-RK PF02042.15 gi|88601776|ref|YP_501954.1| - 0.067 13.2 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 RWP-RK domain Phage_NinH PF06322.11 gi|88601776|ref|YP_501954.1| - 0.073 13.0 0.2 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 Phage NinH protein Methyltransf_25 PF13649.6 gi|88601779|ref|YP_501957.1| - 8e-16 58.5 0.0 1.5e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88601779|ref|YP_501957.1| - 5.3e-14 52.4 0.0 7.1e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88601779|ref|YP_501957.1| - 1.2e-12 48.3 0.0 2.1e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88601779|ref|YP_501957.1| - 4.2e-11 42.9 0.0 5.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|88601779|ref|YP_501957.1| - 1.7e-08 34.4 0.0 2.2e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_12 PF08242.12 gi|88601779|ref|YP_501957.1| - 5e-06 27.2 0.0 8.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|88601779|ref|YP_501957.1| - 2.2e-05 24.0 0.0 3.5e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|88601779|ref|YP_501957.1| - 5.3e-05 22.8 0.0 8.5e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|88601779|ref|YP_501957.1| - 6.4e-05 23.1 0.0 0.0022 18.1 0.0 2.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|88601779|ref|YP_501957.1| - 8.4e-05 22.0 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family SAM_MT PF04445.13 gi|88601779|ref|YP_501957.1| - 0.016 14.6 0.0 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase MetW PF07021.12 gi|88601779|ref|YP_501957.1| - 0.089 12.4 0.0 0.32 10.6 0.0 2.0 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Pox_MCEL PF03291.16 gi|88601779|ref|YP_501957.1| - 0.12 11.4 0.0 0.39 9.8 0.0 1.7 2 0 0 2 2 2 0 mRNA capping enzyme Mrr_cat PF04471.12 gi|88601780|ref|YP_501958.1| - 1.2e-37 128.5 0.0 1.8e-37 127.9 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.6 gi|88601780|ref|YP_501958.1| - 9.1e-33 112.3 0.0 2.4e-32 110.9 0.0 1.7 1 0 0 1 1 1 1 Mrr N-terminal domain Mrr_cat_2 PF13156.6 gi|88601780|ref|YP_501958.1| - 3.5e-14 52.8 0.0 6.8e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DDE_5 PF13546.6 gi|88601781|ref|YP_501959.1| - 1.1e-14 54.4 0.0 3.6e-14 52.8 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88601781|ref|YP_501959.1| - 1.4e-12 47.8 0.8 2.2e-12 47.1 0.8 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88601781|ref|YP_501959.1| - 4.2e-05 22.9 0.1 6.4e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 Peripla_BP_6 PF13458.6 gi|88601782|ref|YP_501960.1| - 1.1e-15 58.1 0.0 1.6e-15 57.7 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein AAA-ATPase_like PF09820.9 gi|88601783|ref|YP_501961.1| - 1.3e-95 320.1 0.7 1.8e-95 319.5 0.7 1.2 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601783|ref|YP_501961.1| - 3.2e-33 113.8 0.5 7.2e-33 112.6 0.5 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3903 PF13043.6 gi|88601783|ref|YP_501961.1| - 0.025 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) DUF3943 PF13084.6 gi|88601783|ref|YP_501961.1| - 0.062 13.2 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) PRiA4_ORF3 PF07929.11 gi|88601784|ref|YP_501962.1| - 1.6e-08 34.5 0.0 2.2e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein Cystatin PF00031.21 gi|88601784|ref|YP_501962.1| - 0.034 14.4 0.2 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 Cystatin domain zf-dskA_traR PF01258.17 gi|88601784|ref|YP_501962.1| - 0.034 14.1 2.2 0.068 13.1 0.1 2.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|88601784|ref|YP_501962.1| - 0.18 12.0 5.8 1.9 8.8 1.3 2.6 2 0 0 2 2 2 0 LIM domain Prok-RING_4 PF14447.6 gi|88601784|ref|YP_501962.1| - 5.1 7.0 10.6 3.5 7.6 3.3 3.3 3 1 0 3 3 3 0 Prokaryotic RING finger family 4 DUF5611 PF18446.1 gi|88601785|ref|YP_501963.1| - 0.096 13.6 3.6 4.4 8.2 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF5611) PEGA PF08308.11 gi|88601786|ref|YP_501964.1| - 4e-17 61.8 0.4 8.8e-17 60.8 0.1 1.7 2 0 0 2 2 2 1 PEGA domain CarboxypepD_reg PF13620.6 gi|88601786|ref|YP_501964.1| - 0.0048 17.1 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DDE_Tnp_1_6 PF13751.6 gi|88601787|ref|YP_501965.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601787|ref|YP_501965.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601787|ref|YP_501965.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601787|ref|YP_501965.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain Peptidase_S8 PF00082.22 gi|88601789|ref|YP_501967.1| - 1.2e-41 142.9 9.4 2.1e-41 142.1 9.4 1.4 1 0 0 1 1 1 1 Subtilase family Peptidase_S8_N PF16361.5 gi|88601789|ref|YP_501967.1| - 0.0013 19.3 0.0 0.0021 18.6 0.0 1.4 1 0 0 1 1 1 1 N-terminal of Subtilase family Peripla_BP_6 PF13458.6 gi|88601790|ref|YP_501968.1| - 1.3e-39 136.8 0.0 1.7e-39 136.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|88601790|ref|YP_501968.1| - 1.7e-15 57.0 0.0 2.3e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|88601790|ref|YP_501968.1| - 1.7e-10 40.4 0.0 2.5e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|88601790|ref|YP_501968.1| - 0.062 12.1 0.1 0.095 11.5 0.1 1.2 1 0 0 1 1 1 0 LppC putative lipoprotein PPR PF01535.20 gi|88601790|ref|YP_501968.1| - 0.18 12.1 0.0 0.58 10.5 0.0 2.0 1 0 0 1 1 1 0 PPR repeat Peptidase_C13 PF01650.18 gi|88601791|ref|YP_501969.1| - 1.3e-46 159.2 0.0 1.9e-46 158.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase C13 family Peripla_BP_6 PF13458.6 gi|88601791|ref|YP_501969.1| - 1.6e-24 87.2 0.0 3.4e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|88601791|ref|YP_501969.1| - 1.7e-09 37.3 0.0 2.6e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peptidase_C14 PF00656.22 gi|88601791|ref|YP_501969.1| - 8.2e-06 25.9 0.0 0.016 15.2 0.0 3.2 2 1 0 2 2 2 1 Caspase domain Peripla_BP_5 PF13433.6 gi|88601791|ref|YP_501969.1| - 1.1e-05 24.6 0.0 1.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain VWA_2 PF13519.6 gi|88601792|ref|YP_501970.1| - 4.4e-17 62.7 1.4 2.8e-08 34.4 0.1 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA PF00092.28 gi|88601792|ref|YP_501970.1| - 5.3e-14 52.8 0.6 1.7e-06 28.4 0.1 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain Integrin_beta PF00362.18 gi|88601792|ref|YP_501970.1| - 3.6e-12 46.5 2.2 0.00017 21.3 0.0 4.1 2 2 2 4 4 4 2 Integrin beta chain VWA domain COMMD1_N PF17221.3 gi|88601792|ref|YP_501970.1| - 0.0059 16.9 0.1 12 6.3 0.0 4.0 4 0 0 4 4 4 1 COMMD1 N-terminal domain NTase_sub_bind PF08780.11 gi|88601793|ref|YP_501971.1| - 1.8e-44 150.7 0.8 2e-44 150.5 0.8 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like Polbeta PF18765.1 gi|88601794|ref|YP_501972.1| - 3.5e-15 55.9 0.0 4e-15 55.7 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88601794|ref|YP_501972.1| - 1.9e-07 31.3 0.0 2.3e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Response_reg PF00072.24 gi|88601796|ref|YP_501974.1| - 2.9e-27 95.1 0.0 6.2e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88601796|ref|YP_501974.1| - 1.7e-09 38.2 0.4 9.8e-09 35.7 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88601796|ref|YP_501974.1| - 0.00018 21.1 3.2 0.00019 21.0 0.0 2.7 3 0 0 3 3 3 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|88601796|ref|YP_501974.1| - 0.00058 19.7 0.6 0.0013 18.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4527 PF15030.6 gi|88601796|ref|YP_501974.1| - 0.016 14.6 1.3 0.027 13.9 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) RICTOR_M PF14666.6 gi|88601796|ref|YP_501974.1| - 0.08 12.7 0.2 0.22 11.3 0.2 1.9 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, middle domain GIT_CC PF16559.5 gi|88601796|ref|YP_501974.1| - 3.8 7.4 11.9 0.25 11.2 5.1 2.2 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor JIP_LZII PF16471.5 gi|88601796|ref|YP_501974.1| - 4.7 7.5 8.0 5.4 7.3 6.1 2.0 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Response_reg PF00072.24 gi|88601797|ref|YP_501975.1| - 2.1e-25 89.1 0.0 4.5e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|88601797|ref|YP_501975.1| - 1.4e-22 79.8 1.4 3.4e-22 78.6 1.4 1.6 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|88601797|ref|YP_501975.1| - 4e-19 69.2 0.1 7.3e-19 68.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|88601797|ref|YP_501975.1| - 1.6e-10 41.1 0.1 5.6e-10 39.3 0.1 2.0 1 0 0 1 1 1 1 Hpt domain HATPase_c_3 PF13589.6 gi|88601797|ref|YP_501975.1| - 0.0005 19.9 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88601797|ref|YP_501975.1| - 0.021 14.8 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Cache_3-Cache_2 PF17201.4 gi|88601798|ref|YP_501976.1| - 3.5e-79 266.1 9.0 3.5e-79 266.1 9.0 2.1 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain sCache_3_3 PF17202.4 gi|88601798|ref|YP_501976.1| - 1.7e-33 115.3 3.1 7.7e-33 113.1 3.1 2.2 1 0 0 1 1 1 1 Single cache domain 3 MCPsignal PF00015.21 gi|88601798|ref|YP_501976.1| - 7.2e-33 113.8 30.8 2.5e-32 112.0 23.2 2.8 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|88601798|ref|YP_501976.1| - 4.7e-13 49.5 12.3 4.7e-13 49.5 12.3 3.8 3 1 0 3 3 3 1 Cache domain sCache_3_2 PF17203.4 gi|88601798|ref|YP_501976.1| - 8.2e-11 42.2 1.0 8.2e-11 42.2 1.0 3.3 2 2 2 4 4 4 1 Single cache domain 3 HAMP PF00672.25 gi|88601798|ref|YP_501976.1| - 5.2e-10 39.6 0.3 3e-08 33.9 0.1 3.5 3 0 0 3 3 3 1 HAMP domain sCache_2 PF17200.4 gi|88601798|ref|YP_501976.1| - 6.3e-07 29.4 0.8 6.3e-07 29.4 0.8 3.5 2 2 0 2 2 2 1 Single Cache domain 2 dCache_2 PF08269.11 gi|88601798|ref|YP_501976.1| - 6.5e-05 22.3 0.1 0.00043 19.6 0.0 4.2 4 1 0 5 5 5 2 Cache domain dCache_3 PF14827.6 gi|88601798|ref|YP_501976.1| - 0.0036 17.0 2.5 0.046 13.4 0.0 3.0 2 1 0 2 2 2 1 Double sensory domain of two-component sensor kinase DUF948 PF06103.11 gi|88601798|ref|YP_501976.1| - 0.023 14.9 28.2 0.51 10.6 1.2 6.5 3 1 3 6 6 6 0 Bacterial protein of unknown function (DUF948) PAS_9 PF13426.7 gi|88601798|ref|YP_501976.1| - 0.27 11.5 3.5 19 5.6 0.4 3.7 2 1 1 3 3 3 0 PAS domain DUF1664 PF07889.12 gi|88601798|ref|YP_501976.1| - 3.9 7.5 19.4 1 9.4 8.5 3.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Fes1 PF08609.10 gi|88601798|ref|YP_501976.1| - 6.6 7.7 10.1 1.4 9.8 0.3 3.2 3 0 0 3 3 3 0 Nucleotide exchange factor Fes1 CheW PF01584.19 gi|88601799|ref|YP_501977.1| - 6.4e-37 126.3 0.7 5.9e-24 84.3 0.2 2.2 2 0 0 2 2 2 2 CheW-like domain TrmB PF01978.19 gi|88601800|ref|YP_501978.1| - 7.3e-06 25.8 0.1 1.2e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88601800|ref|YP_501978.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|88601800|ref|YP_501978.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Frankia_peptide PF14407.6 gi|88601800|ref|YP_501978.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. CARDB PF07705.11 gi|88601801|ref|YP_501979.1| - 3.2e-47 159.0 0.0 2.7e-15 56.5 0.0 3.2 3 0 0 3 3 3 3 CARDB TPR_2 PF07719.17 gi|88601801|ref|YP_501979.1| - 7.8e-09 35.0 0.4 0.00028 20.7 0.3 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88601801|ref|YP_501979.1| - 7.3e-08 32.9 0.9 1.1e-07 32.3 0.9 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88601801|ref|YP_501979.1| - 6e-06 25.8 0.2 0.017 15.0 0.2 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88601801|ref|YP_501979.1| - 6.1e-06 25.8 0.0 1.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_17 PF13431.6 gi|88601801|ref|YP_501979.1| - 0.00036 20.7 0.2 0.0011 19.2 0.0 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat Lysyl_oxidase PF01186.17 gi|88601801|ref|YP_501979.1| - 0.00073 19.2 0.1 8.8 5.9 0.0 3.3 3 0 0 3 3 3 1 Lysyl oxidase DUF4832 PF16116.5 gi|88601801|ref|YP_501979.1| - 0.00077 19.4 0.0 0.039 13.8 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) NARP1 PF12569.8 gi|88601801|ref|YP_501979.1| - 0.02 13.8 0.0 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 TPR_19 PF14559.6 gi|88601801|ref|YP_501979.1| - 0.022 15.3 0.2 0.041 14.4 0.2 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88601801|ref|YP_501979.1| - 0.025 14.7 0.2 0.046 13.9 0.2 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88601801|ref|YP_501979.1| - 0.035 14.3 0.2 1 9.8 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TRAP_beta PF05753.14 gi|88601801|ref|YP_501979.1| - 0.052 12.9 0.3 0.18 11.1 0.0 2.0 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) TPR_14 PF13428.6 gi|88601801|ref|YP_501979.1| - 0.075 13.9 1.4 0.2 12.5 0.6 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88601801|ref|YP_501979.1| - 0.26 12.0 0.8 2.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat MCPsignal PF00015.21 gi|88601802|ref|YP_501980.1| - 1e-39 136.1 17.2 1e-39 136.1 17.2 4.7 3 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|88601802|ref|YP_501980.1| - 1.1e-20 73.9 0.0 2.9e-09 37.2 0.0 4.0 3 1 0 3 3 3 2 PAS fold PAS PF00989.25 gi|88601802|ref|YP_501980.1| - 1.3e-19 70.2 0.3 1.6e-08 34.5 0.0 3.8 4 2 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|88601802|ref|YP_501980.1| - 1.7e-19 70.0 0.0 5.4e-09 36.2 0.0 3.4 2 1 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|88601802|ref|YP_501980.1| - 9.6e-14 51.0 0.0 5.7e-07 29.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|88601802|ref|YP_501980.1| - 4.6e-05 23.6 2.6 2.9 8.1 0.0 5.4 6 0 0 6 6 6 1 PAS fold DUF948 PF06103.11 gi|88601802|ref|YP_501980.1| - 0.0031 17.8 20.2 0.2 11.9 1.6 5.2 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|88601802|ref|YP_501980.1| - 0.0088 16.4 2.7 0.044 14.2 0.0 3.2 3 0 0 3 3 3 1 HAMP domain ApoLp-III PF07464.11 gi|88601802|ref|YP_501980.1| - 0.042 13.9 21.6 0.084 13.0 5.0 4.2 4 0 0 4 4 4 0 Apolipophorin-III precursor (apoLp-III) PAS_3 PF08447.12 gi|88601802|ref|YP_501980.1| - 0.059 13.7 0.0 15 6.0 0.0 3.0 2 0 0 2 2 2 0 PAS fold ubiquitin PF00240.23 gi|88601802|ref|YP_501980.1| - 0.25 11.1 3.2 0.55 10.0 0.2 2.7 2 0 0 2 2 2 0 Ubiquitin family DUF1993 PF09351.10 gi|88601802|ref|YP_501980.1| - 0.57 10.3 4.9 0.32 11.1 0.5 2.8 2 1 2 4 4 4 0 Domain of unknown function (DUF1993) Baculo_PEP_C PF04513.12 gi|88601802|ref|YP_501980.1| - 1.8 8.6 20.9 0.71 9.9 4.3 3.9 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_3 PF01381.22 gi|88601804|ref|YP_501982.1| - 1.7e-10 40.8 0.1 3e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|88601804|ref|YP_501982.1| - 4.1e-07 30.3 0.0 6.7e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|88601804|ref|YP_501982.1| - 1.3e-06 28.7 0.0 2.1e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|88601804|ref|YP_501982.1| - 4.3e-05 23.4 0.0 7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|88601804|ref|YP_501982.1| - 0.001 18.8 0.2 0.006 16.4 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain PrpR_N PF06506.11 gi|88601804|ref|YP_501982.1| - 0.0014 18.3 1.0 0.0025 17.4 0.2 1.8 2 0 0 2 2 2 1 Propionate catabolism activator HTH_8 PF02954.19 gi|88601804|ref|YP_501982.1| - 0.02 14.7 0.2 0.084 12.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_17 PF12728.7 gi|88601804|ref|YP_501982.1| - 0.031 14.5 0.1 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|88601804|ref|YP_501982.1| - 0.06 13.1 0.0 0.58 10.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_20 PF12840.7 gi|88601804|ref|YP_501982.1| - 0.06 13.4 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|88601804|ref|YP_501982.1| - 0.071 13.3 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DTW PF03942.15 gi|88601804|ref|YP_501982.1| - 0.088 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 DTW domain HTH_35 PF13693.6 gi|88601804|ref|YP_501982.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HypD PF01924.16 gi|88601805|ref|YP_501983.1| - 2.1e-135 451.3 0.0 2.5e-135 451.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Transpeptidase PF00905.22 gi|88601806|ref|YP_501984.1| - 0.21 10.8 0.0 0.23 10.6 0.0 1.0 1 0 0 1 1 1 0 Penicillin binding protein transpeptidase domain B3_4 PF03483.17 gi|88601807|ref|YP_501985.1| - 4.8e-28 98.0 0.0 6.6e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain PhdYeFM_antitox PF02604.19 gi|88601808|ref|YP_501986.1| - 0.00052 19.8 0.0 0.0008 19.2 0.0 1.5 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Pox_TAA1 PF03295.14 gi|88601808|ref|YP_501986.1| - 0.01 15.7 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Poxvirus trans-activator protein A1 C-terminal VWA_2 PF13519.6 gi|88601808|ref|YP_501986.1| - 0.061 14.0 0.0 0.068 13.8 0.0 1.1 1 0 0 1 1 1 0 von Willebrand factor type A domain PIN_3 PF13470.6 gi|88601809|ref|YP_501987.1| - 1.1e-13 51.9 0.0 1.7e-13 51.3 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|88601809|ref|YP_501987.1| - 0.0095 16.2 0.0 2.6 8.3 0.0 2.1 2 0 0 2 2 2 2 PIN domain PIN PF01850.21 gi|88601809|ref|YP_501987.1| - 0.025 15.1 0.0 0.12 12.9 0.0 1.9 1 1 0 1 1 1 0 PIN domain Cation_ATPase_N PF00690.26 gi|88601810|ref|YP_501988.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus HTH_36 PF13730.6 gi|88601811|ref|YP_501989.1| - 0.007 16.3 0.4 0.02 14.8 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|88601812|ref|YP_501990.1| - 0.0086 16.0 2.7 0.019 14.9 2.7 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) OrfB_Zn_ribbon PF07282.11 gi|88601812|ref|YP_501990.1| - 0.044 13.7 3.0 0.099 12.6 3.0 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.14 gi|88601812|ref|YP_501990.1| - 0.046 13.6 1.1 0.13 12.1 1.1 1.8 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS PHF5 PF03660.14 gi|88601812|ref|YP_501990.1| - 0.056 13.6 0.8 0.098 12.9 0.8 1.3 1 0 0 1 1 1 0 PHF5-like protein Ribosomal_L37ae PF01780.19 gi|88601812|ref|YP_501990.1| - 0.14 12.3 1.0 0.27 11.3 1.0 1.4 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-C3HC4_3 PF13920.6 gi|88601812|ref|YP_501990.1| - 0.29 11.0 5.2 0.72 9.8 5.2 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MTH865 PF07747.11 gi|88601813|ref|YP_501991.1| - 1.3e-19 69.7 0.0 1.5e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 MTH865-like family AA_kinase PF00696.28 gi|88601817|ref|YP_501995.1| - 1.2e-23 84.0 0.1 2.8e-23 82.8 0.1 1.6 1 1 0 1 1 1 1 Amino acid kinase family APS_kinase PF01583.20 gi|88601817|ref|YP_501995.1| - 0.096 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase PQ-loop PF04193.14 gi|88601818|ref|YP_501996.1| - 1.3e-11 44.1 2.4 1.3e-11 44.1 2.4 1.5 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.16 gi|88601818|ref|YP_501996.1| - 2.9e-06 27.2 2.2 4.2e-06 26.7 2.1 1.4 1 1 0 1 1 1 1 Sugar efflux transporter for intercellular exchange 7TMR-DISM_7TM PF07695.11 gi|88601818|ref|YP_501996.1| - 0.0019 18.1 1.9 0.0025 17.7 1.9 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF1129 PF06570.11 gi|88601818|ref|YP_501996.1| - 0.0054 16.2 1.1 0.007 15.9 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) LAB_N PF07578.11 gi|88601818|ref|YP_501996.1| - 0.052 13.6 2.1 0.085 13.0 2.1 1.4 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain SPC12 PF06645.13 gi|88601818|ref|YP_501996.1| - 2.5 8.3 8.7 3.1 7.9 0.0 2.2 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) MFS_MOT1 PF16983.5 gi|88601819|ref|YP_501997.1| - 5.2e-49 165.3 32.3 1.6e-26 92.9 5.4 3.5 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily SapB_2 PF03489.17 gi|88601819|ref|YP_501997.1| - 0.041 14.0 0.0 0.09 12.9 0.0 1.6 1 0 0 1 1 1 0 Saposin-like type B, region 2 SK_channel PF03530.14 gi|88601819|ref|YP_501997.1| - 0.061 13.3 0.2 0.2 11.7 0.2 1.8 1 0 0 1 1 1 0 Calcium-activated SK potassium channel PetM PF08041.11 gi|88601819|ref|YP_501997.1| - 1.3 8.6 12.6 4 7.1 1.7 3.4 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 PNTB_4TM PF12769.7 gi|88601819|ref|YP_501997.1| - 4.5 7.8 13.3 17 6.0 0.1 4.3 5 0 0 5 5 5 0 4TM region of pyridine nucleotide transhydrogenase, mitoch ABC_tran PF00005.27 gi|88601820|ref|YP_501998.1| - 1.9e-33 115.9 0.0 3.2e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|88601820|ref|YP_501998.1| - 5.2e-13 49.1 0.1 3.7e-12 46.4 0.1 2.3 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|88601820|ref|YP_501998.1| - 5.4e-10 39.6 0.3 0.00028 20.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|88601820|ref|YP_501998.1| - 3.1e-05 24.1 0.0 5.6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|88601820|ref|YP_501998.1| - 4.4e-05 23.0 0.1 0.00015 21.3 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|88601820|ref|YP_501998.1| - 4.7e-05 23.7 0.2 0.00034 20.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88601820|ref|YP_501998.1| - 0.013 15.3 0.2 0.032 14.0 0.2 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601820|ref|YP_501998.1| - 0.02 15.3 0.0 0.035 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|88601820|ref|YP_501998.1| - 0.031 14.8 0.3 0.058 13.9 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|88601820|ref|YP_501998.1| - 0.033 13.9 0.0 2 8.0 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|88601820|ref|YP_501998.1| - 0.04 13.7 0.3 0.64 9.7 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|88601820|ref|YP_501998.1| - 0.047 13.6 0.3 0.1 12.5 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase ABC_ATPase PF09818.9 gi|88601820|ref|YP_501998.1| - 0.12 11.2 0.3 0.27 10.0 0.3 1.5 1 0 0 1 1 1 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|88601820|ref|YP_501998.1| - 0.13 12.2 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|88601820|ref|YP_501998.1| - 0.13 12.5 0.3 2.8 8.2 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|88601821|ref|YP_501999.1| - 3.3e-14 53.0 18.8 4.2e-14 52.7 18.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component TNFR_16_TM PF18422.1 gi|88601821|ref|YP_501999.1| - 0.068 13.1 2.8 3 7.9 0.1 2.7 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Deltameth_res PF16020.5 gi|88601821|ref|YP_501999.1| - 5.2 7.0 5.0 1.9 8.4 1.2 2.3 2 0 0 2 2 2 0 Deltamethrin resistance PBP_like_2 PF12849.7 gi|88601822|ref|YP_502000.1| - 3.5e-24 86.0 0.0 4.7e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|88601822|ref|YP_502000.1| - 3e-08 33.7 0.0 4.8e-08 33.0 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88601822|ref|YP_502000.1| - 0.0047 16.9 0.1 0.89 9.4 0.0 2.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|88601822|ref|YP_502000.1| - 0.012 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein HhH-GPD PF00730.25 gi|88601823|ref|YP_502001.1| - 2e-16 60.4 0.0 1.1e-15 58.1 0.0 1.8 1 1 1 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein MoaE PF02391.17 gi|88601824|ref|YP_502002.1| - 5.8e-29 100.7 0.0 6.6e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|88601825|ref|YP_502003.1| - 6.1e-11 42.8 0.0 6.9e-11 42.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiF PF00899.21 gi|88601826|ref|YP_502004.1| - 2.1e-59 200.8 0.0 2.7e-59 200.5 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|88601826|ref|YP_502004.1| - 0.022 14.8 0.1 0.07 13.2 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|88601826|ref|YP_502004.1| - 0.038 13.6 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|88601826|ref|YP_502004.1| - 0.06 12.9 0.0 0.17 11.5 0.0 1.7 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|88601826|ref|YP_502004.1| - 0.063 13.5 0.2 0.45 10.8 0.2 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|88601826|ref|YP_502004.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|88601826|ref|YP_502004.1| - 0.11 13.1 0.0 0.26 12.0 0.0 1.6 1 0 0 1 1 1 0 PglD N-terminal domain FAD_binding_3 PF01494.19 gi|88601826|ref|YP_502004.1| - 0.19 10.9 0.1 0.24 10.6 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Phage_holin_2_4 PF16082.5 gi|88601826|ref|YP_502004.1| - 0.4 10.5 1.5 1.2 8.9 0.5 2.1 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like TfuA PF07812.12 gi|88601827|ref|YP_502005.1| - 3.1e-45 152.7 0.0 4.8e-45 152.1 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein GCP_N_terminal PF17681.1 gi|88601827|ref|YP_502005.1| - 0.018 14.7 0.0 0.022 14.4 0.0 1.1 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal YcaO PF02624.16 gi|88601828|ref|YP_502006.1| - 3.3e-94 315.8 0.1 6.4e-94 314.8 0.1 1.4 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF2769 PF10967.8 gi|88601829|ref|YP_502007.1| - 2.3e-17 63.4 17.2 3.2e-17 63.0 17.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Cas_Cas02710 PF09670.10 gi|88601830|ref|YP_502008.1| - 5.8e-131 436.8 0.0 6.7e-131 436.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.11 gi|88601830|ref|YP_502008.1| - 0.023 13.4 0.0 0.038 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) DOMON PF03351.17 gi|88601831|ref|YP_502009.1| - 1.6e-29 102.7 0.0 2e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 DOMON domain HisKA_7TM PF16927.5 gi|88601832|ref|YP_502010.1| - 1e-05 25.7 4.6 1.1e-05 25.5 4.6 1.0 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase Pox_A14 PF05767.12 gi|88601832|ref|YP_502010.1| - 0.039 14.1 0.2 0.039 14.1 0.2 2.4 1 1 1 3 3 3 0 Poxvirus virion envelope protein A14 FapA PF03961.13 gi|88601833|ref|YP_502011.1| - 3.3 6.2 13.5 3.3 6.2 11.2 1.8 1 1 1 2 2 2 0 Flagellar Assembly Protein A ISK_Channel PF02060.15 gi|88601833|ref|YP_502011.1| - 9.3 6.0 9.9 0.27 10.9 0.3 2.4 2 0 0 2 2 2 0 Slow voltage-gated potassium channel NUDIX PF00293.28 gi|88601834|ref|YP_502012.1| - 7.6e-16 58.4 0.0 9.7e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|88601834|ref|YP_502012.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 gi|88601834|ref|YP_502012.1| - 0.019 14.5 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 Nucleotide hydrolase Flavodoxin_2 PF02525.17 gi|88601835|ref|YP_502013.1| - 1.5e-32 112.9 0.0 2.1e-32 112.4 0.0 1.2 1 1 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|88601835|ref|YP_502013.1| - 1.6e-11 44.2 0.0 2.1e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF853 PF05872.12 gi|88601836|ref|YP_502014.1| - 3.4e-196 652.7 0.0 4.3e-196 652.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|88601836|ref|YP_502014.1| - 5.3e-11 43.1 0.0 9.9e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|88601836|ref|YP_502014.1| - 1.9e-05 23.8 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|88601836|ref|YP_502014.1| - 3.2e-05 23.4 0.1 0.00025 20.5 0.1 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|88601836|ref|YP_502014.1| - 0.00011 22.5 0.7 0.047 14.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.9 gi|88601836|ref|YP_502014.1| - 0.00017 20.6 0.0 0.00031 19.8 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.12 gi|88601836|ref|YP_502014.1| - 0.0002 21.1 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|88601836|ref|YP_502014.1| - 0.0013 18.8 0.0 0.05 13.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|88601836|ref|YP_502014.1| - 0.017 15.5 0.1 2.4 8.6 0.1 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|88601836|ref|YP_502014.1| - 0.018 14.1 0.1 0.033 13.3 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|88601836|ref|YP_502014.1| - 0.023 14.0 0.1 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|88601836|ref|YP_502014.1| - 0.035 13.6 0.2 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|88601836|ref|YP_502014.1| - 0.055 13.8 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|88601836|ref|YP_502014.1| - 0.058 13.8 0.2 6 7.2 0.0 2.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|88601836|ref|YP_502014.1| - 0.09 12.5 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain E1-E2_ATPase PF00122.20 gi|88601837|ref|YP_502015.1| - 1.5e-48 164.7 3.0 1.5e-48 164.7 3.0 3.2 3 0 0 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|88601837|ref|YP_502015.1| - 1.4e-35 122.6 8.4 1.4e-35 122.6 8.4 2.5 4 0 0 4 4 4 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|88601837|ref|YP_502015.1| - 6.2e-20 72.4 4.8 2.7e-19 70.3 4.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|88601837|ref|YP_502015.1| - 2e-19 69.4 0.0 1.2e-18 67.0 0.0 2.3 3 0 0 3 3 3 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|88601837|ref|YP_502015.1| - 2.5e-18 65.5 0.0 2.5e-18 65.5 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|88601837|ref|YP_502015.1| - 4e-05 23.5 3.4 0.0011 18.8 1.2 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88601837|ref|YP_502015.1| - 0.00063 20.2 0.1 0.0014 19.0 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DZR PF12773.7 gi|88601838|ref|YP_502016.1| - 0.0065 16.5 1.9 0.011 15.8 1.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|88601838|ref|YP_502016.1| - 0.015 15.0 4.7 0.022 14.5 4.7 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|88601838|ref|YP_502016.1| - 0.021 14.2 3.6 0.051 13.0 3.6 1.7 1 0 0 1 1 1 0 zinc-ribbon domain Cupin_2 PF07883.11 gi|88601839|ref|YP_502017.1| - 7e-13 48.1 0.0 8.6e-13 47.8 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|88601839|ref|YP_502017.1| - 6.9e-06 26.0 0.0 8.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Asp_Arg_Hydrox PF05118.15 gi|88601839|ref|YP_502017.1| - 0.00024 21.0 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_6 PF12852.7 gi|88601839|ref|YP_502017.1| - 0.0003 20.6 0.0 0.00034 20.4 0.0 1.1 1 0 0 1 1 1 1 Cupin PORR PF11955.8 gi|88601839|ref|YP_502017.1| - 0.0014 17.6 0.0 0.0018 17.3 0.0 1.0 1 0 0 1 1 1 1 Plant organelle RNA recognition domain Cupin_1 PF00190.22 gi|88601839|ref|YP_502017.1| - 0.0032 17.1 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.6 gi|88601839|ref|YP_502017.1| - 0.0037 17.0 0.0 0.0038 16.9 0.0 1.0 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.12 gi|88601839|ref|YP_502017.1| - 0.0049 16.5 0.0 0.0081 15.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|88601839|ref|YP_502017.1| - 0.022 14.9 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase CENP-C_C PF11699.8 gi|88601839|ref|YP_502017.1| - 0.059 13.6 0.0 0.074 13.3 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like KduI PF04962.12 gi|88601839|ref|YP_502017.1| - 0.074 12.3 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family MannoseP_isomer PF01050.18 gi|88601839|ref|YP_502017.1| - 0.099 12.5 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_N PF06719.13 gi|88601839|ref|YP_502017.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Ppnp PF06865.11 gi|88601839|ref|YP_502017.1| - 0.16 12.4 0.0 0.2 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase AlbA_2 PF04326.14 gi|88601840|ref|YP_502018.1| - 7.5e-20 71.5 0.1 1.7e-19 70.3 0.1 1.6 1 0 0 1 1 1 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|88601840|ref|YP_502018.1| - 9.4e-18 64.2 0.0 3.2e-15 56.0 0.0 2.5 2 0 0 2 2 2 1 Putative ATP-dependent DNA helicase recG C-terminal HTH_24 PF13412.6 gi|88601840|ref|YP_502018.1| - 8.9e-06 25.2 1.0 2.8e-05 23.6 1.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|88601840|ref|YP_502018.1| - 1.3e-05 25.1 0.2 3.8e-05 23.5 0.2 1.8 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|88601840|ref|YP_502018.1| - 3.5e-05 23.6 0.0 7.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|88601840|ref|YP_502018.1| - 0.00039 20.4 0.0 0.00093 19.2 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|88601840|ref|YP_502018.1| - 0.00053 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|88601840|ref|YP_502018.1| - 0.00063 20.2 0.0 0.0016 18.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|88601840|ref|YP_502018.1| - 0.00068 19.5 0.3 0.0036 17.2 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|88601840|ref|YP_502018.1| - 0.0014 18.5 0.1 0.0033 17.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|88601840|ref|YP_502018.1| - 0.0016 18.3 0.1 0.0043 16.9 0.1 1.7 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 gi|88601840|ref|YP_502018.1| - 0.004 17.1 0.5 0.037 14.0 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|88601840|ref|YP_502018.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|88601840|ref|YP_502018.1| - 0.014 15.5 0.0 0.033 14.4 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4707 PF15806.5 gi|88601840|ref|YP_502018.1| - 0.021 13.8 0.1 0.041 12.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4707) HTH_DeoR PF08220.12 gi|88601840|ref|YP_502018.1| - 0.021 14.5 0.0 0.071 12.9 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|88601840|ref|YP_502018.1| - 0.03 14.0 0.1 0.086 12.5 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|88601840|ref|YP_502018.1| - 0.036 13.9 0.1 0.085 12.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|88601840|ref|YP_502018.1| - 0.069 13.5 0.1 0.17 12.3 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.6 gi|88601840|ref|YP_502018.1| - 0.077 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TBPIP PF07106.13 gi|88601840|ref|YP_502018.1| - 0.086 12.8 0.0 0.31 11.0 0.0 2.0 2 0 0 2 2 1 0 TBPIP/Hop2 winged helix domain DUF2250 PF10007.9 gi|88601840|ref|YP_502018.1| - 0.09 12.9 0.1 0.27 11.4 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_7 PF02796.15 gi|88601840|ref|YP_502018.1| - 0.13 12.4 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Amidohydro_1 PF01979.20 gi|88601841|ref|YP_502019.1| - 1.2e-13 51.1 0.0 9.4e-13 48.2 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|88601841|ref|YP_502019.1| - 2.8e-09 37.0 0.0 4.5e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF4349 PF14257.6 gi|88601842|ref|YP_502020.1| - 6.6e-55 185.9 1.4 6.6e-55 185.9 1.4 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4349) DUF3450 PF11932.8 gi|88601842|ref|YP_502020.1| - 0.0052 16.1 0.7 0.0097 15.2 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF3333 PF11812.8 gi|88601842|ref|YP_502020.1| - 0.057 13.6 1.3 0.44 10.7 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3333) DUF3316 PF11777.8 gi|88601842|ref|YP_502020.1| - 0.078 13.0 0.3 0.17 12.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3316) SHE3 PF17078.5 gi|88601842|ref|YP_502020.1| - 0.15 11.7 2.3 0.6 9.8 0.5 2.0 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 HTH_Tnp_1 PF01527.20 gi|88601842|ref|YP_502020.1| - 0.36 11.2 1.9 38 4.7 0.2 3.0 3 0 0 3 3 3 0 Transposase Snapin_Pallidin PF14712.6 gi|88601842|ref|YP_502020.1| - 0.6 10.6 3.3 3.7 8.0 1.5 2.3 2 1 0 2 2 2 0 Snapin/Pallidin Cnn_1N PF07989.11 gi|88601842|ref|YP_502020.1| - 0.69 10.1 2.6 0.97 9.6 0.1 2.4 2 1 1 3 3 3 0 Centrosomin N-terminal motif 1 Apq12 PF12716.7 gi|88601842|ref|YP_502020.1| - 4.3 7.3 10.8 0.054 13.4 3.0 1.8 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis Usp PF00582.26 gi|88601843|ref|YP_502021.1| - 3.8e-29 102.0 0.5 4.2e-29 101.9 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|88601843|ref|YP_502021.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.4 1 1 0 1 1 1 0 DNA photolyase DUF2179 PF10035.9 gi|88601844|ref|YP_502022.1| - 9.1e-11 41.3 0.1 1.4e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) PAS PF00989.25 gi|88601846|ref|YP_502024.1| - 4.4e-34 116.9 0.0 5.5e-10 39.3 0.0 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|88601846|ref|YP_502024.1| - 5.2e-33 113.4 3.3 5.9e-13 49.0 0.0 5.7 5 2 0 5 5 4 4 PAS domain PAS_8 PF13188.7 gi|88601846|ref|YP_502024.1| - 1.4e-25 88.8 0.5 5.9e-08 32.6 0.0 4.9 5 0 0 5 5 4 4 PAS domain Response_reg PF00072.24 gi|88601846|ref|YP_502024.1| - 5.3e-25 87.8 0.0 1.4e-22 80.0 0.0 2.6 2 0 0 2 2 2 1 Response regulator receiver domain PAS_3 PF08447.12 gi|88601846|ref|YP_502024.1| - 1.2e-19 70.3 0.2 6.7e-08 32.7 0.0 4.5 5 0 0 5 5 3 2 PAS fold PAS_4 PF08448.10 gi|88601846|ref|YP_502024.1| - 5.7e-18 65.2 0.0 0.0011 19.2 0.0 5.8 5 1 0 5 5 5 3 PAS fold HATPase_c PF02518.26 gi|88601846|ref|YP_502024.1| - 1.1e-09 38.7 0.5 7.4e-09 36.1 0.2 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|88601846|ref|YP_502024.1| - 0.00078 20.0 0.0 1.2 9.7 0.0 3.8 3 0 0 3 3 3 1 PAS domain Spc7 PF08317.11 gi|88601846|ref|YP_502024.1| - 0.03 13.2 3.7 0.079 11.8 3.7 1.6 1 0 0 1 1 1 0 Spc7 kinetochore protein SPOB_a PF14689.6 gi|88601846|ref|YP_502024.1| - 0.034 13.9 0.0 0.11 12.2 0.0 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain TyeA PF09059.10 gi|88601846|ref|YP_502024.1| - 0.048 13.8 0.0 5.8 7.1 0.0 3.4 3 0 0 3 3 3 0 TyeA EMP24_GP25L PF01105.24 gi|88601846|ref|YP_502024.1| - 0.049 13.6 1.0 0.76 9.7 0.1 2.9 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD BTB_3 PF16017.5 gi|88601846|ref|YP_502024.1| - 0.085 13.0 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 BTB/POZ domain PAS_12 PF18095.1 gi|88601846|ref|YP_502024.1| - 0.1 12.2 0.2 17 5.0 0.0 3.4 4 0 0 4 4 4 0 UPF0242 C-terminal PAS-like domain Bacillus_HBL PF05791.11 gi|88601846|ref|YP_502024.1| - 0.13 12.1 1.4 0.18 11.6 0.1 1.9 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.15 gi|88601846|ref|YP_502024.1| - 0.13 12.2 5.6 0.3 11.0 1.4 2.8 2 0 0 2 2 2 0 Sec34-like family SdpA PF17418.2 gi|88601846|ref|YP_502024.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Sporulation delaying protein SdpA OmpH PF03938.14 gi|88601846|ref|YP_502024.1| - 0.44 10.9 6.2 1.9 8.8 1.3 3.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Spc24 PF08286.11 gi|88601846|ref|YP_502024.1| - 0.44 10.8 3.8 0.37 11.1 0.3 2.6 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 Mod_r PF07200.13 gi|88601846|ref|YP_502024.1| - 0.95 9.6 8.3 0.32 11.1 1.2 3.2 4 0 0 4 4 4 0 Modifier of rudimentary (Mod(r)) protein FlgN PF05130.12 gi|88601846|ref|YP_502024.1| - 4.5 7.8 7.3 0.56 10.7 0.5 2.9 4 0 0 4 4 4 0 FlgN protein DUF373 PF04123.13 gi|88601848|ref|YP_502026.1| - 0.00027 20.5 14.4 0.043 13.3 4.6 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF373) DUF3483 PF11982.8 gi|88601848|ref|YP_502026.1| - 0.0023 17.6 3.1 0.0023 17.6 3.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF3483) DUF308 PF03729.13 gi|88601848|ref|YP_502026.1| - 0.0064 16.8 13.6 0.0064 16.8 13.6 3.6 1 1 1 3 3 3 2 Short repeat of unknown function (DUF308) S_4TM PF18159.1 gi|88601848|ref|YP_502026.1| - 0.066 12.5 0.2 0.066 12.5 0.2 2.2 2 1 0 2 2 2 0 SMODS-associating 4TM effector domain ABC2_membrane_5 PF13346.6 gi|88601848|ref|YP_502026.1| - 1.9 8.0 21.4 5.3e+02 0.0 21.4 2.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|88601848|ref|YP_502026.1| - 5.5 5.2 9.4 8.4 4.6 9.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1565 PF07602.11 gi|88601849|ref|YP_502027.1| - 6.2e-30 104.3 22.1 5.6e-20 71.7 7.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Beta_helix PF13229.6 gi|88601849|ref|YP_502027.1| - 8.8e-21 74.4 10.6 8.8e-21 74.4 10.6 2.4 1 1 1 2 2 2 1 Right handed beta helix region NosD PF05048.13 gi|88601849|ref|YP_502027.1| - 5.6e-15 55.3 11.3 3.3e-10 39.6 9.0 2.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PAS_3 PF08447.12 gi|88601850|ref|YP_502028.1| - 1.1e-48 163.5 0.3 7e-25 87.1 0.5 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88601850|ref|YP_502028.1| - 4.6e-26 91.1 0.1 8e-08 32.5 0.0 3.9 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|88601850|ref|YP_502028.1| - 4.2e-25 88.1 0.0 1.5e-24 86.3 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88601850|ref|YP_502028.1| - 5.6e-21 74.7 0.2 5.3e-09 36.1 0.0 4.2 4 1 0 4 4 3 3 PAS fold PAS_8 PF13188.7 gi|88601850|ref|YP_502028.1| - 7.8e-16 57.7 0.0 2.1e-08 34.0 0.0 4.1 4 0 0 4 4 3 3 PAS domain PAS_4 PF08448.10 gi|88601850|ref|YP_502028.1| - 2.3e-11 43.9 0.0 0.00087 19.5 0.0 3.8 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|88601850|ref|YP_502028.1| - 5.4e-09 36.6 0.1 1.4e-08 35.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88601850|ref|YP_502028.1| - 0.0011 19.1 0.0 0.02 15.0 0.0 2.9 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 gi|88601850|ref|YP_502028.1| - 0.0045 17.1 3.5 0.11 12.7 0.0 4.3 4 1 0 4 4 4 1 PAS fold MazG-like PF12643.7 gi|88601850|ref|YP_502028.1| - 0.067 13.4 2.8 7.8 6.8 0.1 4.1 4 0 0 4 4 4 0 MazG-like family HATPase_c_5 PF14501.6 gi|88601850|ref|YP_502028.1| - 0.07 13.0 0.5 0.24 11.4 0.1 2.1 2 0 0 2 2 2 0 GHKL domain DUF3450 PF11932.8 gi|88601850|ref|YP_502028.1| - 0.12 11.7 2.5 0.27 10.5 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) HisKA PF00512.25 gi|88601850|ref|YP_502028.1| - 0.12 12.4 2.2 0.76 9.9 0.0 2.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Thioredoxin_6 PF13848.6 gi|88601850|ref|YP_502028.1| - 0.12 12.2 0.0 3.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin-like domain ATP-grasp_3 PF02655.14 gi|88601850|ref|YP_502028.1| - 0.15 12.1 0.3 1.1 9.3 0.0 2.4 3 0 0 3 3 3 0 ATP-grasp domain PDDEXK_1 PF12705.7 gi|88601851|ref|YP_502029.1| - 1.3e-34 120.2 0.0 2.5e-34 119.3 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 gi|88601851|ref|YP_502029.1| - 0.0013 17.1 0.0 0.063 11.5 0.0 2.2 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit UvrD-helicase PF00580.21 gi|88601852|ref|YP_502030.1| - 5.3e-65 220.0 0.4 9.7e-65 219.1 0.4 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|88601852|ref|YP_502030.1| - 2.4e-28 99.3 0.0 2e-27 96.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|88601852|ref|YP_502030.1| - 1.9e-27 96.6 0.0 1.3e-16 61.0 0.0 2.7 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|88601852|ref|YP_502030.1| - 1.3e-11 44.1 0.1 0.00019 21.2 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|88601852|ref|YP_502030.1| - 5.6e-09 36.0 0.1 4.7e-06 26.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain PDDEXK_1 PF12705.7 gi|88601852|ref|YP_502030.1| - 2.8e-08 34.0 0.0 9.4e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|88601852|ref|YP_502030.1| - 1.6e-06 28.1 0.1 0.85 9.3 0.0 4.2 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|88601852|ref|YP_502030.1| - 2.8e-05 24.4 0.1 0.00097 19.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|88601852|ref|YP_502030.1| - 0.0013 18.2 0.0 0.87 9.0 0.0 3.3 3 0 0 3 3 3 1 PhoH-like protein Glyco_hydro_77 PF02446.17 gi|88601853|ref|YP_502031.1| - 4.6e-157 523.6 0.0 5.7e-157 523.3 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase DUF3536 PF12055.8 gi|88601854|ref|YP_502032.1| - 2.5e-104 348.6 0.0 3.6e-104 348.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.15 gi|88601854|ref|YP_502032.1| - 3.1e-13 49.6 0.1 5.1e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 HEPN_Swt1 PF18731.1 gi|88601855|ref|YP_502033.1| - 4e-06 27.1 0.3 2.6e-05 24.6 0.0 2.3 2 1 0 2 2 2 1 Swt1-like HEPN DDE_Tnp_1 PF01609.21 gi|88601856|ref|YP_502034.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88601856|ref|YP_502034.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88601856|ref|YP_502034.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) PFK PF00365.20 gi|88601857|ref|YP_502035.1| - 1.6e-101 339.4 0.9 2e-101 339.1 0.9 1.1 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 gi|88601857|ref|YP_502035.1| - 0.021 14.0 0.5 0.051 12.8 0.0 1.8 2 0 0 2 2 2 0 ATP-NAD kinase NAD_kinase PF01513.21 gi|88601858|ref|YP_502036.1| - 5.5e-43 147.2 0.0 6.9e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|88601858|ref|YP_502036.1| - 1e-05 25.2 0.1 4.3e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PALP PF00291.25 gi|88601859|ref|YP_502037.1| - 1.6e-43 149.2 0.0 1.9e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AA_permease_2 PF13520.6 gi|88601860|ref|YP_502038.1| - 9.7e-32 110.3 59.1 1.3e-31 109.9 59.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|88601860|ref|YP_502038.1| - 1.1e-18 67.2 55.0 1.6e-18 66.6 55.0 1.3 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|88601860|ref|YP_502038.1| - 5.5e-05 22.2 18.7 5.5e-05 22.2 18.7 2.7 1 1 1 2 2 2 1 Spore germination protein Acetyltransf_2 PF00797.17 gi|88601861|ref|YP_502039.1| - 0.0039 17.0 0.0 0.007 16.2 0.0 1.6 1 1 0 1 1 1 1 N-acetyltransferase DUF5612 PF18462.1 gi|88601862|ref|YP_502040.1| - 3.1e-70 234.6 8.8 4.3e-70 234.1 8.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|88601862|ref|YP_502040.1| - 1.5e-09 37.4 0.3 2.1e-08 33.8 0.1 2.5 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|88601862|ref|YP_502040.1| - 0.00027 21.5 0.2 0.0011 19.5 0.1 2.1 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|88601862|ref|YP_502040.1| - 0.012 15.5 0.1 0.029 14.3 0.0 1.7 2 0 0 2 2 2 0 ACT domain Transketolase_C PF02780.20 gi|88601862|ref|YP_502040.1| - 0.029 14.2 1.0 0.065 13.1 0.7 1.8 2 0 0 2 2 2 0 Transketolase, C-terminal domain Sua5_yciO_yrdC PF01300.18 gi|88601863|ref|YP_502041.1| - 2.7e-41 141.1 0.0 3.3e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.23 gi|88601864|ref|YP_502042.1| - 0.00033 20.9 0.0 0.00074 19.8 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain RPN13_C PF16550.5 gi|88601864|ref|YP_502042.1| - 0.039 14.1 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 UCH-binding domain DUF4404 PF14357.6 gi|88601864|ref|YP_502042.1| - 0.23 12.1 0.5 21 5.8 0.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4404) Cas_Cas4 PF01930.17 gi|88601865|ref|YP_502043.1| - 0.00014 22.0 0.1 0.00054 20.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|88601865|ref|YP_502043.1| - 0.00034 20.6 1.5 0.0022 18.0 0.2 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Peptidase_C21 PF05381.12 gi|88601865|ref|YP_502043.1| - 0.099 13.0 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Tymovirus endopeptidase DUF3467 PF11950.8 gi|88601866|ref|YP_502044.1| - 2e-14 53.6 0.1 2.4e-14 53.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) ATP-grasp_5 PF13549.6 gi|88601867|ref|YP_502045.1| - 5.8e-66 222.1 0.0 9.2e-66 221.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|88601867|ref|YP_502045.1| - 5e-52 175.4 0.5 1.1e-51 174.2 0.5 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|88601867|ref|YP_502045.1| - 2e-25 89.5 0.0 6.1e-25 88.0 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|88601867|ref|YP_502045.1| - 1.6e-14 54.4 0.2 1.6e-14 54.4 0.2 2.4 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|88601867|ref|YP_502045.1| - 0.0041 16.7 0.1 0.038 13.6 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|88601867|ref|YP_502045.1| - 0.018 14.7 0.0 0.043 13.4 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain RimK PF08443.11 gi|88601867|ref|YP_502045.1| - 0.032 13.8 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|88601867|ref|YP_502045.1| - 0.061 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMP-binding PF00501.28 gi|88601868|ref|YP_502046.1| - 1.6e-93 313.6 0.0 2e-93 313.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88601868|ref|YP_502046.1| - 6.6e-25 87.9 0.2 2.3e-24 86.2 0.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|88601868|ref|YP_502046.1| - 8.2e-17 60.9 6.5 2e-16 59.6 6.5 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus TBP PF00352.21 gi|88601869|ref|YP_502047.1| - 1e-54 182.4 0.0 1.9e-27 95.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|88601869|ref|YP_502047.1| - 1.6e-06 28.1 0.0 0.072 13.2 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|88601869|ref|YP_502047.1| - 0.065 12.9 0.0 5.3 6.8 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S Rib_5-P_isom_A PF06026.14 gi|88601870|ref|YP_502048.1| - 8.3e-58 194.8 0.1 1e-57 194.5 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|88601870|ref|YP_502048.1| - 2.6e-07 30.7 0.1 0.00021 21.2 0.1 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|88601870|ref|YP_502048.1| - 0.073 12.2 0.1 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain SurE PF01975.17 gi|88601871|ref|YP_502049.1| - 5.5e-51 173.1 0.0 7.2e-51 172.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE ATP-grasp_3 PF02655.14 gi|88601872|ref|YP_502050.1| - 1.8e-30 106.1 0.0 8.8e-30 103.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|88601872|ref|YP_502050.1| - 1.1e-05 24.9 0.0 0.00027 20.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp preATP-grasp_3 PF18301.1 gi|88601872|ref|YP_502050.1| - 0.00046 20.4 0.0 0.00091 19.5 0.0 1.5 1 0 0 1 1 1 1 pre ATP-grasp 3 domain ATP-grasp PF02222.22 gi|88601872|ref|YP_502050.1| - 0.0035 16.9 0.0 0.019 14.5 0.0 2.2 3 0 0 3 3 3 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|88601872|ref|YP_502050.1| - 0.0039 16.8 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|88601872|ref|YP_502050.1| - 0.0065 16.2 0.0 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon DUF370 PF04025.12 gi|88601872|ref|YP_502050.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF370) Hydantoinase_A PF01968.18 gi|88601873|ref|YP_502051.1| - 7.2e-12 45.2 0.0 1.6e-11 44.0 0.0 1.6 1 1 0 1 1 1 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|88601873|ref|YP_502051.1| - 0.11 11.0 0.1 0.11 11.0 0.1 1.5 2 0 0 2 2 2 0 MutL protein zinc_ribbon_2 PF13240.6 gi|88601874|ref|YP_502052.1| - 0.0056 16.4 0.7 0.0083 15.8 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|88601874|ref|YP_502052.1| - 0.062 13.3 0.1 0.089 12.8 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.9 gi|88601874|ref|YP_502052.1| - 0.12 12.6 1.3 0.18 12.1 0.5 1.7 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|88601874|ref|YP_502052.1| - 0.32 10.5 1.8 0.62 9.5 1.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|88601874|ref|YP_502052.1| - 0.57 11.0 0.3 0.57 11.0 0.3 1.7 1 1 1 2 2 2 0 zinc-ribbon family TrkA_N PF02254.18 gi|88601875|ref|YP_502053.1| - 0.017 15.4 0.0 0.21 11.9 0.0 2.2 2 1 1 3 3 3 0 TrkA-N domain SKI PF01202.22 gi|88601875|ref|YP_502053.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase TrmB PF01978.19 gi|88601876|ref|YP_502054.1| - 2.1e-05 24.3 0.0 3.5e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88601876|ref|YP_502054.1| - 3e-05 23.8 0.0 4.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|88601876|ref|YP_502054.1| - 0.00074 19.2 0.1 0.0016 18.1 0.0 1.6 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB DUF3213 PF11491.8 gi|88601876|ref|YP_502054.1| - 0.077 13.2 1.2 0.86 9.8 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3213) HTH_37 PF13744.6 gi|88601876|ref|YP_502054.1| - 0.081 12.9 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain CBFD_NFYB_HMF PF00808.23 gi|88601877|ref|YP_502055.1| - 3e-16 59.4 0.3 3.3e-16 59.3 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|88601877|ref|YP_502055.1| - 5.8e-10 39.6 0.1 6.6e-10 39.4 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|88601877|ref|YP_502055.1| - 5.5e-09 36.1 0.1 5.9e-09 36.0 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|88601877|ref|YP_502055.1| - 3.3e-08 33.6 0.6 3.6e-08 33.4 0.6 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) Bromo_TP PF07524.13 gi|88601877|ref|YP_502055.1| - 2.8e-05 24.0 0.0 3e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.13 gi|88601877|ref|YP_502055.1| - 0.00012 22.5 0.0 0.00014 22.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-S PF15630.6 gi|88601877|ref|YP_502055.1| - 0.008 16.5 0.0 0.01 16.2 0.0 1.4 1 1 0 1 1 1 1 CENP-S protein TFIID-18kDa PF02269.16 gi|88601877|ref|YP_502055.1| - 0.056 13.5 0.1 0.08 13.0 0.0 1.3 1 1 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.15 gi|88601877|ref|YP_502055.1| - 0.069 13.2 0.0 0.076 13.1 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit ApbA_C PF08546.11 gi|88601877|ref|YP_502055.1| - 0.098 12.9 0.3 0.12 12.5 0.3 1.3 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal PIN PF01850.21 gi|88601879|ref|YP_502057.1| - 0.00025 21.5 0.8 0.00035 21.1 0.8 1.2 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|88601882|ref|YP_502060.1| - 0.00022 21.6 0.0 0.00026 21.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 FpoO PF10621.9 gi|88601883|ref|YP_502061.1| - 0.016 15.5 0.1 0.026 14.8 0.1 1.3 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO DUF4428 PF14471.6 gi|88601883|ref|YP_502061.1| - 0.31 11.0 3.4 3.6 7.6 3.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) PIN PF01850.21 gi|88601884|ref|YP_502062.1| - 1.2e-14 54.9 0.0 1.4e-14 54.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|88601884|ref|YP_502062.1| - 0.0071 16.1 0.0 0.026 14.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) PIN_3 PF13470.6 gi|88601884|ref|YP_502062.1| - 0.14 12.9 0.2 0.32 11.7 0.2 1.8 1 1 0 1 1 1 0 PIN domain HicB_lk_antitox PF15919.5 gi|88601885|ref|YP_502063.1| - 1.1e-13 51.4 0.1 1.3e-13 51.2 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|88601886|ref|YP_502064.1| - 3.6e-17 62.1 0.0 3.9e-17 62.0 0.0 1.0 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, MraZ PF02381.18 gi|88601886|ref|YP_502064.1| - 0.2 11.6 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like NTP_transf_2 PF01909.23 gi|88601887|ref|YP_502065.1| - 4.3e-09 36.6 0.0 4.9e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88601887|ref|YP_502065.1| - 1.5e-07 31.4 0.0 1.8e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|88601888|ref|YP_502066.1| - 9.4e-07 28.6 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|88601888|ref|YP_502066.1| - 0.00047 19.8 0.2 0.00094 18.8 0.1 1.7 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB TrmB PF01978.19 gi|88601888|ref|YP_502066.1| - 0.0032 17.3 0.1 0.0068 16.3 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB UPF0172 PF03665.13 gi|88601888|ref|YP_502066.1| - 0.058 13.4 0.0 0.069 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) Sigma70_r4_2 PF08281.12 gi|88601888|ref|YP_502066.1| - 0.097 12.4 0.1 0.89 9.3 0.0 2.3 1 1 1 2 2 2 0 Sigma-70, region 4 bPH_2 PF03703.14 gi|88601889|ref|YP_502067.1| - 0.055 13.7 0.0 0.082 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain DDE_Tnp_1_6 PF13751.6 gi|88601890|ref|YP_502068.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601890|ref|YP_502068.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601890|ref|YP_502068.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601890|ref|YP_502068.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain AMP-binding PF00501.28 gi|88601891|ref|YP_502069.1| - 5.2e-84 282.3 0.0 6.2e-84 282.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88601891|ref|YP_502069.1| - 1.6e-23 83.4 0.1 3.2e-23 82.5 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TBP PF00352.21 gi|88601892|ref|YP_502070.1| - 3.7e-48 161.4 0.1 3.3e-26 91.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|88601892|ref|YP_502070.1| - 1.8e-05 24.8 0.0 0.089 12.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|88601892|ref|YP_502070.1| - 0.063 12.9 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S DEAD PF00270.29 gi|88601893|ref|YP_502071.1| - 1.5e-29 103.0 0.0 5.3e-29 101.2 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|88601893|ref|YP_502071.1| - 9.6e-27 94.0 0.0 1.6e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|88601893|ref|YP_502071.1| - 1.7e-22 79.9 0.0 6.6e-21 74.7 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88601893|ref|YP_502071.1| - 9.6e-09 35.5 0.0 2.1e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|88601893|ref|YP_502071.1| - 0.0054 17.1 0.1 0.017 15.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|88601893|ref|YP_502071.1| - 0.012 15.3 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88601893|ref|YP_502071.1| - 0.035 14.4 0.1 0.24 11.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|88601893|ref|YP_502071.1| - 0.043 13.6 0.7 0.38 10.5 0.1 2.6 2 1 1 3 3 3 0 AAA domain HHH PF00633.23 gi|88601893|ref|YP_502071.1| - 0.098 12.6 0.1 0.26 11.2 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|88601893|ref|YP_502071.1| - 0.1 13.2 0.6 0.32 11.6 0.1 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain Metallophos PF00149.28 gi|88601894|ref|YP_502072.1| - 1e-09 39.2 2.6 2.6e-09 37.9 2.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|88601894|ref|YP_502072.1| - 2.9e-06 27.6 0.3 1.6e-05 25.2 0.2 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|88601894|ref|YP_502072.1| - 0.006 15.9 0.0 0.068 12.5 0.0 2.0 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily SOAR PF16533.5 gi|88601894|ref|YP_502072.1| - 0.19 11.7 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 STIM1 Orai1-activating region RPA_C PF08784.11 gi|88601895|ref|YP_502073.1| - 0.1 13.2 0.0 0.17 12.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal PKD PF00801.20 gi|88601896|ref|YP_502074.1| - 2.7e-111 363.5 63.3 1.2e-15 57.1 1.1 10.6 11 0 0 11 11 11 9 PKD domain SBBP PF06739.11 gi|88601896|ref|YP_502074.1| - 4e-30 103.5 37.7 2.3e-07 30.7 3.4 7.7 7 0 0 7 7 7 5 Beta-propeller repeat PKD_3 PF16820.5 gi|88601896|ref|YP_502074.1| - 8.9e-22 76.6 28.6 0.01 15.6 0.3 9.6 9 0 0 9 9 9 9 PKD-like domain MG2 PF01835.19 gi|88601896|ref|YP_502074.1| - 5.5e-14 52.4 10.2 3.7 8.1 0.0 9.5 10 0 0 10 10 10 5 MG2 domain DUF5122 PF17164.4 gi|88601896|ref|YP_502074.1| - 0.035 14.4 2.2 28 5.1 0.1 4.7 3 1 0 3 3 3 0 Domain of unknown function (DUF5122) beta-propeller Y_Y_Y PF07495.13 gi|88601896|ref|YP_502074.1| - 0.042 13.8 13.0 2.6 8.1 0.2 6.5 7 0 0 7 7 7 0 Y_Y_Y domain TTc_toxin_rep PF18807.1 gi|88601896|ref|YP_502074.1| - 0.16 11.8 1.4 7.9 6.4 0.1 2.9 3 0 0 3 3 3 0 Tripartite Tc toxins repeat MFS_1 PF07690.16 gi|88601897|ref|YP_502075.1| - 5.1e-54 183.5 58.6 5.1e-54 183.5 58.6 2.5 1 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88601897|ref|YP_502075.1| - 7.9e-10 38.2 48.2 4.4e-06 25.8 20.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|88601897|ref|YP_502075.1| - 0.3 9.3 35.2 0.013 13.8 7.1 3.5 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.13 gi|88601897|ref|YP_502075.1| - 1.9 6.8 25.0 0.097 11.1 12.6 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector DUF3262 PF11660.8 gi|88601897|ref|YP_502075.1| - 5.2 7.5 8.4 3.1 8.3 0.0 3.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3262) HSP20 PF00011.21 gi|88601898|ref|YP_502076.1| - 1.1e-22 80.1 0.5 1.4e-22 79.8 0.5 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|88601898|ref|YP_502076.1| - 2.6e-11 42.9 0.0 3.8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DUF1735 PF08522.10 gi|88601898|ref|YP_502076.1| - 0.0006 20.4 0.1 0.00082 20.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1735) CS PF04969.16 gi|88601898|ref|YP_502076.1| - 0.039 15.0 0.0 0.057 14.4 0.0 1.3 1 0 0 1 1 1 0 CS domain PsiE PF06146.12 gi|88601899|ref|YP_502077.1| - 8.2e-12 45.3 12.4 8.2e-12 45.3 12.4 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF3965 PF13112.6 gi|88601899|ref|YP_502077.1| - 0.074 12.2 1.7 0.12 11.5 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3965) AAA_3 PF07726.11 gi|88601900|ref|YP_502078.1| - 1.8e-66 221.9 0.1 3.4e-66 221.0 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|88601900|ref|YP_502078.1| - 7.9e-20 70.5 0.1 1.5e-19 69.6 0.1 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|88601900|ref|YP_502078.1| - 1.5e-12 47.7 0.0 2.5e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|88601900|ref|YP_502078.1| - 1e-06 28.0 0.0 9e-06 24.9 0.0 2.3 2 1 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|88601900|ref|YP_502078.1| - 0.00041 20.1 0.0 0.0022 17.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|88601900|ref|YP_502078.1| - 0.00045 20.0 0.0 0.0074 16.0 0.1 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|88601900|ref|YP_502078.1| - 0.0006 19.2 0.6 0.025 14.0 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|88601900|ref|YP_502078.1| - 0.00093 19.6 0.0 0.0016 18.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF58 PF01882.18 gi|88601901|ref|YP_502079.1| - 1.7e-20 73.1 0.0 4.2e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|88601901|ref|YP_502079.1| - 2.5e-08 34.5 0.1 8.3e-08 32.8 0.1 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|88601901|ref|YP_502079.1| - 0.0004 20.7 0.0 0.00065 20.0 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VipB PF05943.12 gi|88601901|ref|YP_502079.1| - 0.091 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion protein, EvpB/VC_A0108, tail sheath VWA PF00092.28 gi|88601902|ref|YP_502080.1| - 4.4e-24 85.7 0.0 6.1e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|88601902|ref|YP_502080.1| - 8.9e-22 77.8 0.0 1.7e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.11 gi|88601902|ref|YP_502080.1| - 9.8e-13 48.3 0.2 2.1e-12 47.2 0.0 1.6 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_3 PF13768.6 gi|88601902|ref|YP_502080.1| - 1.1e-07 31.9 0.0 5e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|88601902|ref|YP_502080.1| - 5.2e-06 26.0 0.2 2.7e-05 23.7 0.2 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF1194 PF06707.11 gi|88601902|ref|YP_502080.1| - 7.3e-06 25.3 0.1 0.00092 18.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1194) Ssl1 PF04056.14 gi|88601902|ref|YP_502080.1| - 0.13 12.1 0.0 0.57 10.0 0.0 1.9 2 0 0 2 2 2 0 Ssl1-like TFIIA PF03153.13 gi|88601903|ref|YP_502081.1| - 0.14 12.1 17.6 0.19 11.7 17.6 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Exonuc_VII_L PF02601.15 gi|88601903|ref|YP_502081.1| - 0.25 10.9 7.1 0.36 10.3 7.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DotU PF09850.9 gi|88601903|ref|YP_502081.1| - 1.3 8.7 3.5 1.6 8.4 0.0 2.3 2 1 0 2 2 2 0 Type VI secretion system protein DotU YlqD PF11068.8 gi|88601903|ref|YP_502081.1| - 2.3 8.6 14.8 4.8 7.6 14.8 1.5 1 0 0 1 1 1 0 YlqD protein Gastrin PF00918.17 gi|88601903|ref|YP_502081.1| - 2.7 9.0 15.5 0.36 11.8 7.8 2.7 2 1 1 3 3 3 0 Gastrin/cholecystokinin family DUF2207 PF09972.9 gi|88601904|ref|YP_502082.1| - 3.1e-68 230.8 0.1 4.9e-68 230.1 0.0 1.3 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) PG_binding_1 PF01471.18 gi|88601904|ref|YP_502082.1| - 0.028 14.6 0.0 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 Putative peptidoglycan binding domain tRNA-synt_1 PF00133.22 gi|88601905|ref|YP_502083.1| - 9.5e-185 615.3 0.7 1.2e-184 614.9 0.7 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|88601905|ref|YP_502083.1| - 5.9e-33 114.0 0.1 1.3e-32 112.9 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|88601905|ref|YP_502083.1| - 8.6e-27 93.9 2.2 2.7e-10 39.6 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|88601905|ref|YP_502083.1| - 5.1e-07 29.3 0.0 1.7e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|88601905|ref|YP_502083.1| - 0.00016 20.7 0.0 0.00072 18.6 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) TRAM_2 PF18693.1 gi|88601905|ref|YP_502083.1| - 0.1 12.8 0.1 0.4 10.9 0.1 2.0 1 0 0 1 1 1 0 TRAM domain Thg1 PF04446.12 gi|88601907|ref|YP_502085.1| - 3.2e-25 88.6 0.0 5.3e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|88601907|ref|YP_502085.1| - 2.4e-07 30.9 0.1 3.2e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Cas_Cas6 PF01881.16 gi|88601907|ref|YP_502085.1| - 0.15 12.6 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas6 PRC PF05239.16 gi|88601908|ref|YP_502086.1| - 1.6e-14 53.7 1.2 1.9e-14 53.5 1.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain META PF03724.16 gi|88601909|ref|YP_502087.1| - 7.3e-43 145.0 0.0 1.5e-21 76.3 0.0 2.1 2 0 0 2 2 2 2 META domain DUF2318 PF10080.9 gi|88601909|ref|YP_502087.1| - 0.055 13.6 0.2 11 6.2 0.0 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) DUF4923 PF16270.5 gi|88601909|ref|YP_502087.1| - 0.076 12.8 0.2 0.28 11.0 0.1 1.9 2 1 0 2 2 2 0 Lipocalin-like domain (DUF4923) DUF4361 PF14274.6 gi|88601909|ref|YP_502087.1| - 0.19 12.0 1.6 6.1 7.1 0.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4361) DUF5640 PF18692.1 gi|88601909|ref|YP_502087.1| - 0.34 11.0 1.4 2 8.5 0.1 2.7 2 1 1 3 3 3 0 Family of unknown function (DUF5640) CBS PF00571.28 gi|88601910|ref|YP_502088.1| - 1.4e-28 99.0 6.7 2.4e-14 53.5 2.6 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|88601910|ref|YP_502088.1| - 3.2e-14 52.8 9.1 1.5e-08 34.2 2.0 2.9 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|88601910|ref|YP_502088.1| - 0.00044 20.0 3.8 0.00044 20.0 3.8 2.2 2 1 0 3 3 3 1 Peptidase M50B-like Radical_SAM PF04055.21 gi|88601911|ref|YP_502089.1| - 9.2e-12 45.7 0.0 1.3e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily MAF_flag10 PF01973.18 gi|88601912|ref|YP_502090.1| - 5.7e-27 94.5 0.0 7.1e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|88601912|ref|YP_502090.1| - 0.00089 19.3 0.2 0.003 17.6 0.0 1.8 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain TrkA_N PF02254.18 gi|88601913|ref|YP_502091.1| - 1.8e-23 83.0 0.0 4.9e-23 81.6 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|88601913|ref|YP_502091.1| - 6.5e-15 55.2 0.7 1.7e-14 53.8 0.7 1.8 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|88601913|ref|YP_502091.1| - 7.2e-10 39.4 0.0 6.4e-09 36.4 0.0 2.3 2 0 0 2 2 2 1 DHHA1 domain KR PF08659.10 gi|88601913|ref|YP_502091.1| - 0.008 16.1 0.0 0.055 13.4 0.0 2.1 2 0 0 2 2 2 1 KR domain NAD_binding_7 PF13241.6 gi|88601913|ref|YP_502091.1| - 0.0092 16.4 0.0 0.51 10.8 0.0 2.7 2 1 1 3 3 3 1 Putative NAD(P)-binding ApbA PF02558.16 gi|88601913|ref|YP_502091.1| - 0.06 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|88601913|ref|YP_502091.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|88601913|ref|YP_502091.1| - 0.087 13.1 0.0 0.43 10.8 0.0 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain HEAT_2 PF13646.6 gi|88601914|ref|YP_502092.1| - 2e-63 210.8 17.9 2.5e-13 50.2 0.1 12.5 5 3 3 11 11 11 8 HEAT repeats HEAT PF02985.22 gi|88601914|ref|YP_502092.1| - 2.9e-31 104.8 1.8 0.00087 19.3 0.0 13.2 13 0 0 13 13 13 7 HEAT repeat HEAT_PBS PF03130.16 gi|88601914|ref|YP_502092.1| - 1.7e-16 59.1 27.2 0.0078 16.8 0.3 15.5 15 1 1 16 16 16 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|88601914|ref|YP_502092.1| - 2.3e-12 47.1 25.5 1.1 9.8 0.0 13.4 13 2 2 15 15 14 3 HEAT-like repeat Cnd1 PF12717.7 gi|88601914|ref|YP_502092.1| - 1.4e-11 44.7 0.1 0.08 13.0 0.0 8.2 5 2 3 8 8 8 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|88601914|ref|YP_502092.1| - 6.9e-09 35.5 5.0 2.7 8.1 0.0 11.6 13 2 2 15 15 14 1 Armadillo/beta-catenin-like repeat Cohesin_HEAT PF12765.7 gi|88601914|ref|YP_502092.1| - 2.1e-06 27.9 1.9 0.57 10.5 0.0 5.1 5 0 0 5 5 5 2 HEAT repeat associated with sister chromatid cohesion RasGEF_N_2 PF14663.6 gi|88601914|ref|YP_502092.1| - 2.5e-05 24.6 0.0 16 5.9 0.0 7.1 7 2 1 8 8 8 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Aconitase_B_N PF11791.8 gi|88601914|ref|YP_502092.1| - 8e-05 22.8 0.6 2.8 8.0 0.0 7.1 6 2 2 9 9 9 1 Aconitate B N-terminal domain Adaptin_N PF01602.20 gi|88601914|ref|YP_502092.1| - 0.00052 18.7 0.0 0.62 8.5 0.0 4.1 4 1 1 5 5 5 1 Adaptin N terminal region CLASP_N PF12348.8 gi|88601914|ref|YP_502092.1| - 0.0018 17.9 0.5 9.4 5.7 0.0 5.2 6 1 1 7 7 7 1 CLASP N terminal Vac14_Fab1_bd PF12755.7 gi|88601914|ref|YP_502092.1| - 0.0035 17.9 0.0 31 5.3 0.0 6.0 5 1 2 7 7 7 0 Vacuolar 14 Fab1-binding region XPC-binding PF09280.11 gi|88601914|ref|YP_502092.1| - 0.093 12.5 0.1 2.9 7.7 0.0 3.7 3 0 0 3 3 3 0 XPC-binding domain OTCace_N PF02729.21 gi|88601915|ref|YP_502093.1| - 4e-45 153.5 0.0 7.1e-45 152.6 0.0 1.4 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|88601915|ref|YP_502093.1| - 5.7e-27 94.7 0.0 7.5e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2576 PF10845.8 gi|88601915|ref|YP_502093.1| - 0.17 11.5 0.3 0.35 10.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) PyrI PF01948.18 gi|88601916|ref|YP_502094.1| - 2e-31 108.1 4.6 2.6e-31 107.7 4.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|88601916|ref|YP_502094.1| - 1.5e-11 44.0 1.4 1.5e-11 44.0 1.4 2.4 3 0 0 3 3 3 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.15 gi|88601916|ref|YP_502094.1| - 0.037 14.1 0.1 0.069 13.2 0.1 1.4 1 0 0 1 1 1 0 BED zinc finger CTP_transf_like PF01467.26 gi|88601917|ref|YP_502095.1| - 8.3e-14 52.0 0.0 9.4e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|88601917|ref|YP_502095.1| - 0.0072 16.2 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase Hexapep PF00132.24 gi|88601918|ref|YP_502096.1| - 6.9e-15 54.1 22.9 6.3e-07 28.9 5.6 4.3 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|88601918|ref|YP_502096.1| - 0.0016 18.1 22.0 0.044 13.6 2.2 3.8 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|88601918|ref|YP_502096.1| - 0.061 12.2 0.1 0.065 12.2 0.1 1.2 1 0 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|88601918|ref|YP_502096.1| - 0.53 8.4 5.5 0.32 9.1 1.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) Pyr_redox_2 PF07992.14 gi|88601919|ref|YP_502097.1| - 7.5e-27 94.3 0.0 1.8e-26 93.1 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.6 gi|88601919|ref|YP_502097.1| - 1e-09 38.4 6.7 1e-09 38.4 6.7 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|88601919|ref|YP_502097.1| - 1.5e-08 34.7 0.1 4.5e-08 33.2 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|88601919|ref|YP_502097.1| - 3.4e-08 33.3 1.1 5.7e-08 32.5 0.5 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|88601919|ref|YP_502097.1| - 4.3e-08 33.1 5.5 4.3e-06 26.6 3.1 2.6 3 0 0 3 3 2 1 FAD dependent oxidoreductase Fer4_16 PF13484.6 gi|88601919|ref|YP_502097.1| - 7.3e-08 33.2 8.7 0.0052 17.7 0.4 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|88601919|ref|YP_502097.1| - 1.5e-07 31.9 16.9 2.1e-05 25.0 11.7 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|88601919|ref|YP_502097.1| - 1.7e-07 30.7 2.6 2.8e-07 30.0 2.1 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4 PF00037.27 gi|88601919|ref|YP_502097.1| - 1.4e-06 27.9 15.8 3.7e-05 23.4 4.5 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88601919|ref|YP_502097.1| - 2.3e-06 27.6 16.7 2.7e-05 24.2 10.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|88601919|ref|YP_502097.1| - 5.6e-06 25.7 1.5 8.4e-06 25.1 0.2 1.9 3 0 0 3 3 3 1 Glucose inhibited division protein A Fer4_8 PF13183.6 gi|88601919|ref|YP_502097.1| - 7.3e-06 26.3 12.6 0.074 13.5 0.0 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|88601919|ref|YP_502097.1| - 2.4e-05 24.8 1.0 9.6e-05 22.9 1.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|88601919|ref|YP_502097.1| - 3.6e-05 22.7 1.3 0.00017 20.5 1.3 1.9 2 0 0 2 2 2 1 HI0933-like protein Fer4_6 PF12837.7 gi|88601919|ref|YP_502097.1| - 7.3e-05 22.7 14.9 0.00089 19.2 4.1 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Thi4 PF01946.17 gi|88601919|ref|YP_502097.1| - 0.00015 21.1 0.2 0.00036 19.9 0.1 1.7 2 0 0 2 2 2 1 Thi4 family Fer4_21 PF14697.6 gi|88601919|ref|YP_502097.1| - 0.00042 20.4 27.6 0.022 14.9 1.3 3.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601919|ref|YP_502097.1| - 0.00091 19.7 6.8 0.00091 19.7 6.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88601919|ref|YP_502097.1| - 0.0028 18.0 27.1 0.073 13.6 3.2 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Pyr_redox_3 PF13738.6 gi|88601919|ref|YP_502097.1| - 0.0035 16.7 3.0 0.032 13.5 0.7 2.9 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_2 PF12797.7 gi|88601919|ref|YP_502097.1| - 0.0065 16.5 4.4 0.0065 16.5 4.4 3.9 4 0 0 4 4 2 2 4Fe-4S binding domain FAD_binding_3 PF01494.19 gi|88601919|ref|YP_502097.1| - 0.011 15.0 0.9 0.02 14.2 0.9 1.3 1 0 0 1 1 1 0 FAD binding domain Fer4_3 PF12798.7 gi|88601919|ref|YP_502097.1| - 0.022 15.7 6.4 0.022 15.7 6.4 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88601919|ref|YP_502097.1| - 0.026 14.7 2.3 0.026 14.7 2.3 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Amino_oxidase PF01593.24 gi|88601919|ref|YP_502097.1| - 0.027 13.7 0.1 0.052 12.8 0.1 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Fer4_15 PF13459.6 gi|88601919|ref|YP_502097.1| - 0.028 15.1 7.6 1.7 9.4 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Trp_halogenase PF04820.14 gi|88601919|ref|YP_502097.1| - 0.039 12.8 1.7 0.3 9.9 1.6 2.0 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|88601919|ref|YP_502097.1| - 0.044 13.1 0.1 0.14 11.4 0.1 1.8 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|88601919|ref|YP_502097.1| - 0.12 12.4 1.2 0.74 9.8 0.3 2.5 3 0 0 3 3 2 0 FAD-NAD(P)-binding Fer4_13 PF13370.6 gi|88601919|ref|YP_502097.1| - 0.12 13.0 17.7 0.13 12.8 1.3 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Lycopene_cycl PF05834.12 gi|88601919|ref|YP_502097.1| - 0.12 11.4 1.5 0.28 10.2 1.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_22 PF17179.4 gi|88601919|ref|YP_502097.1| - 0.14 13.0 0.7 0.14 13.0 0.7 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain AFP PF02420.15 gi|88601919|ref|YP_502097.1| - 6 7.6 15.2 5.7 7.6 0.7 3.4 3 1 0 3 3 3 0 Insect antifreeze protein repeat IF-2B PF01008.17 gi|88601920|ref|YP_502098.1| - 3.4e-84 282.4 0.0 4e-84 282.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF116 PF01976.17 gi|88601921|ref|YP_502099.1| - 7.8e-48 161.9 0.0 9.8e-48 161.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 UbiA PF01040.18 gi|88601922|ref|YP_502100.1| - 1.9e-41 142.0 16.1 2.5e-41 141.6 16.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family TRM PF02005.16 gi|88601923|ref|YP_502101.1| - 4.3e-89 299.3 0.0 4.9e-89 299.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase zf-H2C2_2 PF13465.6 gi|88601923|ref|YP_502101.1| - 0.011 16.1 0.7 4.9 7.8 0.0 2.7 2 0 0 2 2 2 0 Zinc-finger double domain DUF2067 PF09840.9 gi|88601923|ref|YP_502101.1| - 0.018 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) zf_C2H2_10 PF18414.1 gi|88601923|ref|YP_502101.1| - 0.12 11.9 2.6 1.8 8.1 0.8 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger HA70_C PF17993.1 gi|88601923|ref|YP_502101.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Haemagglutinin 70 C-terminal domain zf-TFIIB PF13453.6 gi|88601923|ref|YP_502101.1| - 0.96 8.8 2.8 2.7 7.4 2.7 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger MMR_HSR1_Xtn PF16897.5 gi|88601924|ref|YP_502102.1| - 4.9e-30 103.7 0.1 1.3e-29 102.3 0.1 1.8 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|88601924|ref|YP_502102.1| - 1.3e-20 73.6 0.1 2.9e-20 72.5 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|88601924|ref|YP_502102.1| - 2.7e-19 69.0 0.0 4.9e-19 68.1 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|88601924|ref|YP_502102.1| - 7.5e-17 61.3 1.1 5.5e-12 45.5 0.1 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|88601924|ref|YP_502102.1| - 2.9e-08 33.8 1.8 0.0008 19.3 0.0 2.6 3 0 0 3 3 2 2 RsgA GTPase SRPRB PF09439.10 gi|88601924|ref|YP_502102.1| - 3.6e-05 23.3 0.2 0.0037 16.7 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|88601924|ref|YP_502102.1| - 0.0001 21.9 2.5 0.021 14.4 0.0 3.4 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|88601924|ref|YP_502102.1| - 0.00022 21.3 0.4 0.072 13.2 0.2 2.7 1 1 1 2 2 2 1 Dynamin family Arf PF00025.21 gi|88601924|ref|YP_502102.1| - 0.00028 20.4 2.5 0.17 11.3 0.2 3.4 2 2 1 3 3 3 1 ADP-ribosylation factor family AIG1 PF04548.16 gi|88601924|ref|YP_502102.1| - 0.003 16.9 2.5 0.0041 16.5 0.1 2.2 3 0 0 3 3 3 1 AIG1 family cobW PF02492.19 gi|88601924|ref|YP_502102.1| - 0.0076 15.8 4.6 1.3 8.5 0.4 2.6 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|88601924|ref|YP_502102.1| - 0.014 15.9 0.0 0.057 13.9 0.1 2.0 2 1 0 2 2 2 0 ABC transporter MeaB PF03308.16 gi|88601924|ref|YP_502102.1| - 0.025 13.6 1.3 0.16 10.9 0.2 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|88601924|ref|YP_502102.1| - 0.026 14.3 0.4 0.24 11.2 0.0 2.3 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein MCM PF00493.23 gi|88601924|ref|YP_502102.1| - 0.044 12.9 0.4 0.18 10.9 0.0 2.1 2 0 0 2 2 2 0 MCM P-loop domain AAA_28 PF13521.6 gi|88601924|ref|YP_502102.1| - 0.049 13.9 0.6 0.11 12.8 0.6 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88601924|ref|YP_502102.1| - 0.05 13.3 0.5 0.12 12.1 0.5 1.6 1 0 0 1 1 1 0 AAA domain MnmE_helical PF12631.7 gi|88601924|ref|YP_502102.1| - 0.076 13.2 0.0 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 MnmE helical domain AAA_16 PF13191.6 gi|88601924|ref|YP_502102.1| - 0.13 12.6 0.3 0.37 11.1 0.2 1.8 2 0 0 2 2 2 0 AAA ATPase domain Ras PF00071.22 gi|88601924|ref|YP_502102.1| - 0.15 11.7 0.3 15 5.2 0.1 2.5 2 1 0 2 2 2 0 Ras family PduV-EutP PF10662.9 gi|88601924|ref|YP_502102.1| - 0.18 11.5 1.5 5.1 6.8 0.1 2.7 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RHD3 PF05879.12 gi|88601924|ref|YP_502102.1| - 0.49 8.5 2.5 0.48 8.5 0.5 1.9 2 0 0 2 2 2 0 Root hair defective 3 GTP-binding protein (RHD3) DDE_Tnp_1_6 PF13751.6 gi|88601925|ref|YP_502103.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601925|ref|YP_502103.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601925|ref|YP_502103.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601925|ref|YP_502103.1| - 0.016 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain FMN_red PF03358.15 gi|88601926|ref|YP_502104.1| - 4.7e-21 75.2 0.0 6.1e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88601926|ref|YP_502104.1| - 3.3e-09 36.7 0.0 5.2e-09 36.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold DUF4329 PF14220.6 gi|88601926|ref|YP_502104.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) TPP_enzyme_N PF02776.18 gi|88601927|ref|YP_502105.1| - 3.6e-47 160.2 1.3 5.8e-44 149.7 0.4 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|88601927|ref|YP_502105.1| - 1.2e-38 132.3 0.1 2.2e-38 131.4 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|88601927|ref|YP_502105.1| - 1.6e-30 105.6 0.0 3e-30 104.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rubredoxin PF00301.20 gi|88601927|ref|YP_502105.1| - 7.6e-20 70.7 3.4 1.5e-19 69.7 3.4 1.5 1 0 0 1 1 1 1 Rubredoxin Vps36-NZF-N PF16988.5 gi|88601927|ref|YP_502105.1| - 0.0093 15.3 3.7 0.84 9.1 0.1 2.8 3 0 0 3 3 3 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-Sec23_Sec24 PF04810.15 gi|88601927|ref|YP_502105.1| - 0.016 15.2 1.6 3.7 7.7 0.1 2.4 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger VATC PF18716.1 gi|88601927|ref|YP_502105.1| - 0.85 9.5 2.2 21 5.1 0.0 2.6 3 0 0 3 3 3 0 Vms1-associating treble clef domain zf-RanBP PF00641.18 gi|88601927|ref|YP_502105.1| - 2.4 7.6 5.7 1.9 7.9 0.6 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-MIZ PF02891.20 gi|88601927|ref|YP_502105.1| - 6.6 6.6 8.1 1.3 8.8 0.6 2.9 3 0 0 3 3 3 0 MIZ/SP-RING zinc finger DUF4258 PF14076.6 gi|88601928|ref|YP_502106.1| - 8e-21 74.2 0.1 1.2e-20 73.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) BrnT_toxin PF04365.13 gi|88601928|ref|YP_502106.1| - 0.0011 19.3 0.0 0.0016 18.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system MqsA_antitoxin PF15731.5 gi|88601929|ref|YP_502107.1| - 0.0088 16.1 0.3 0.0095 16.0 0.3 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-TFIIB PF13453.6 gi|88601929|ref|YP_502107.1| - 0.016 14.5 0.4 0.036 13.4 0.4 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger YokU PF14122.6 gi|88601929|ref|YP_502107.1| - 0.041 13.9 0.6 0.055 13.5 0.6 1.3 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin zf-C2H2_4 PF13894.6 gi|88601929|ref|YP_502107.1| - 0.098 13.5 1.9 15 6.7 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Herpes_glycoH_C PF17488.2 gi|88601929|ref|YP_502107.1| - 0.17 11.7 0.2 0.32 10.8 0.1 1.5 1 1 1 2 2 2 0 Herpesvirus glycoprotein H C-terminal domain CitMHS PF03600.16 gi|88601930|ref|YP_502108.1| - 7.1e-58 196.2 76.5 9.8e-44 149.7 44.0 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|88601930|ref|YP_502108.1| - 1e-22 80.9 41.3 7.7e-14 51.6 16.8 2.1 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|88601930|ref|YP_502108.1| - 1.5e-18 66.3 1.8 4.2e-10 39.3 0.3 3.0 2 1 1 3 3 3 2 TrkA-C domain DUF2746 PF10874.8 gi|88601930|ref|YP_502108.1| - 0.24 11.9 0.2 0.73 10.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) Gpr1_Fun34_YaaH PF01184.19 gi|88601931|ref|YP_502109.1| - 1.8e-40 138.8 19.3 2.1e-40 138.5 19.3 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF1980 PF09323.10 gi|88601931|ref|YP_502109.1| - 0.12 12.3 1.9 0.13 12.2 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) CcmD PF04995.14 gi|88601931|ref|YP_502109.1| - 0.89 9.7 3.0 25 5.0 1.7 3.0 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF2196 PF09962.9 gi|88601932|ref|YP_502110.1| - 2.1e-30 104.5 1.0 2.4e-30 104.3 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) RcpC PF16976.5 gi|88601932|ref|YP_502110.1| - 0.16 12.1 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Flp pilus assembly protein RcpC/CpaB E1-E2_ATPase PF00122.20 gi|88601933|ref|YP_502111.1| - 4.5e-52 176.2 4.2 4.5e-52 176.2 4.2 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|88601933|ref|YP_502111.1| - 1.2e-42 145.7 2.2 1.2e-42 145.7 2.2 2.8 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|88601933|ref|YP_502111.1| - 1.1e-20 74.9 0.5 1e-19 71.7 0.5 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|88601933|ref|YP_502111.1| - 6.8e-20 71.0 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|88601933|ref|YP_502111.1| - 1.1e-14 53.9 0.0 2.4e-14 52.7 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|88601933|ref|YP_502111.1| - 5.1e-06 26.4 1.1 8.4e-06 25.7 1.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88601933|ref|YP_502111.1| - 0.0053 17.2 0.0 0.0098 16.3 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MacB_PCD PF12704.7 gi|88601933|ref|YP_502111.1| - 0.85 9.9 5.4 0.4 11.0 0.6 2.5 3 0 0 3 3 3 0 MacB-like periplasmic core domain DUF2207 PF09972.9 gi|88601933|ref|YP_502111.1| - 3.4 6.3 6.8 2.2 6.9 0.0 2.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) TrkA_N PF02254.18 gi|88601934|ref|YP_502112.1| - 5e-27 94.5 1.8 1.2e-26 93.2 0.3 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|88601934|ref|YP_502112.1| - 8.6e-09 35.1 0.2 1.5e-08 34.4 0.2 1.4 1 0 0 1 1 1 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|88601934|ref|YP_502112.1| - 1.1e-05 25.7 0.1 3.3e-05 24.1 0.1 1.9 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|88601934|ref|YP_502112.1| - 4.1e-05 24.1 0.7 0.00042 20.8 0.3 2.7 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|88601934|ref|YP_502112.1| - 4.4e-05 23.4 0.2 6.9e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|88601934|ref|YP_502112.1| - 4.9e-05 23.5 0.3 8.9e-05 22.7 0.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|88601934|ref|YP_502112.1| - 0.00013 22.4 0.6 0.00021 21.7 0.1 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|88601934|ref|YP_502112.1| - 0.0012 18.4 0.5 0.0028 17.3 0.2 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|88601934|ref|YP_502112.1| - 0.0024 17.5 0.1 0.0039 16.8 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|88601934|ref|YP_502112.1| - 0.0039 16.6 0.1 0.0074 15.7 0.1 1.4 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|88601934|ref|YP_502112.1| - 0.0064 16.6 0.2 0.022 14.8 0.1 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|88601934|ref|YP_502112.1| - 0.0094 15.6 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|88601934|ref|YP_502112.1| - 0.016 15.4 0.6 0.29 11.4 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|88601934|ref|YP_502112.1| - 0.024 13.9 0.3 0.1 11.8 0.2 1.9 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sulfotransfer_3 PF13469.6 gi|88601934|ref|YP_502112.1| - 0.2 12.0 0.0 0.25 11.7 0.0 1.2 1 0 0 1 1 1 0 Sulfotransferase family TrkA_N PF02254.18 gi|88601935|ref|YP_502113.1| - 1.1e-22 80.5 0.1 1.8e-22 79.8 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|88601935|ref|YP_502113.1| - 9.9e-14 50.9 0.4 6.1e-13 48.4 0.1 2.5 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|88601935|ref|YP_502113.1| - 3.6e-05 24.1 0.1 7.8e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|88601935|ref|YP_502113.1| - 0.00095 19.1 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|88601935|ref|YP_502113.1| - 0.0057 17.2 0.2 0.022 15.4 0.2 2.0 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|88601935|ref|YP_502113.1| - 0.012 15.6 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.13 gi|88601935|ref|YP_502113.1| - 0.041 13.4 0.1 0.084 12.4 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family FAD_binding_3 PF01494.19 gi|88601935|ref|YP_502113.1| - 0.063 12.5 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|88601935|ref|YP_502113.1| - 0.07 13.7 0.1 0.23 12.0 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase RNase_T PF00929.24 gi|88601936|ref|YP_502114.1| - 9.1e-16 58.8 0.0 1.1e-15 58.6 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DNApol_Exo PF18136.1 gi|88601936|ref|YP_502114.1| - 5.8e-05 22.4 0.0 8.1e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 DNA mitochondrial polymerase exonuclease domain dCache_1 PF02743.18 gi|88601937|ref|YP_502115.1| - 1.6e-21 77.2 1.1 4.5e-21 75.8 0.4 2.1 2 0 0 2 2 2 1 Cache domain PAS_9 PF13426.7 gi|88601937|ref|YP_502115.1| - 7e-17 61.6 0.6 3.7e-07 30.3 0.1 3.2 3 0 0 3 3 2 2 PAS domain PAS PF00989.25 gi|88601937|ref|YP_502115.1| - 5.6e-16 58.6 0.5 5.2e-07 29.7 0.1 3.0 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|88601937|ref|YP_502115.1| - 7.8e-14 51.7 0.0 1.7e-05 25.0 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88601937|ref|YP_502115.1| - 2e-13 50.0 0.0 1.6e-07 31.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|88601937|ref|YP_502115.1| - 6.8e-10 39.2 0.0 0.0032 17.7 0.0 3.7 3 1 0 3 3 3 2 PAS fold HAMP PF00672.25 gi|88601937|ref|YP_502115.1| - 1.5e-08 34.8 0.0 2.9e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 HAMP domain HATPase_c PF02518.26 gi|88601937|ref|YP_502115.1| - 3.7e-07 30.7 0.1 1.2e-06 29.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 gi|88601937|ref|YP_502115.1| - 1.8e-06 27.4 0.4 4.2e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain PAS_7 PF12860.7 gi|88601937|ref|YP_502115.1| - 0.00039 20.6 0.3 0.24 11.6 0.0 3.4 4 0 0 4 4 3 1 PAS fold dCache_2 PF08269.11 gi|88601937|ref|YP_502115.1| - 0.04 13.1 0.1 0.04 13.1 0.1 3.1 3 0 0 3 3 3 0 Cache domain DUF4179 PF13786.6 gi|88601937|ref|YP_502115.1| - 0.045 14.2 0.2 0.4 11.2 0.0 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF4179) Pox_I5 PF04713.12 gi|88601937|ref|YP_502115.1| - 0.096 12.7 1.3 0.23 11.5 1.3 1.6 1 0 0 1 1 1 0 Poxvirus protein I5 Ni_hydr_CYTB PF01292.20 gi|88601937|ref|YP_502115.1| - 0.29 10.7 1.1 0.94 9.1 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic cytochrome b561 DUF3552 PF12072.8 gi|88601937|ref|YP_502115.1| - 0.64 9.4 10.3 0.29 10.5 6.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Spc24 PF08286.11 gi|88601937|ref|YP_502115.1| - 1 9.6 5.8 0.54 10.5 1.5 2.7 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 DUF3450 PF11932.8 gi|88601937|ref|YP_502115.1| - 1.1 8.5 5.8 0.75 9.0 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) OmpH PF03938.14 gi|88601937|ref|YP_502115.1| - 6.2 7.2 12.4 0.66 10.3 4.5 3.0 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Peripla_BP_6 PF13458.6 gi|88601938|ref|YP_502116.1| - 7.4e-50 170.5 0.1 8.5e-50 170.3 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|88601938|ref|YP_502116.1| - 1.5e-18 67.0 0.2 6.3e-18 64.9 0.2 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|88601938|ref|YP_502116.1| - 2.4e-15 56.5 0.2 3.4e-15 56.0 0.2 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region POR_N PF01855.19 gi|88601938|ref|YP_502116.1| - 0.053 13.3 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YkyB PF14177.6 gi|88601938|ref|YP_502116.1| - 0.17 12.2 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 YkyB-like protein Response_reg PF00072.24 gi|88601939|ref|YP_502117.1| - 9.6e-22 77.3 0.2 1.9e-21 76.3 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88601939|ref|YP_502117.1| - 9.9e-19 67.6 0.0 4.4e-08 33.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88601939|ref|YP_502117.1| - 2.6e-05 24.4 0.1 0.00019 21.6 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|88601939|ref|YP_502117.1| - 3.7e-05 23.6 0.0 0.049 13.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|88601939|ref|YP_502117.1| - 0.00038 21.0 4.4 0.026 15.1 0.1 2.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|88601939|ref|YP_502117.1| - 0.0038 17.2 0.0 0.11 12.5 0.0 2.6 2 1 0 2 2 2 1 PAS fold NosD PF05048.13 gi|88601941|ref|YP_502119.1| - 4.4e-47 160.4 8.7 7.8e-47 159.6 8.7 1.4 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Lectin_like PF18560.1 gi|88601941|ref|YP_502119.1| - 1.3e-38 132.6 0.0 3.3e-38 131.3 0.0 1.7 1 0 0 1 1 1 1 Lectin like domain Peptidase_C1 PF00112.23 gi|88601941|ref|YP_502119.1| - 1.4e-21 77.6 0.0 2.6e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 Papain family cysteine protease PKD PF00801.20 gi|88601941|ref|YP_502119.1| - 8.3e-21 73.6 6.7 1.1e-10 41.2 0.2 2.8 2 0 0 2 2 2 2 PKD domain Beta_helix PF13229.6 gi|88601941|ref|YP_502119.1| - 5.8e-10 39.2 10.0 1.7e-09 37.8 10.0 1.7 1 0 0 1 1 1 1 Right handed beta helix region MG2 PF01835.19 gi|88601941|ref|YP_502119.1| - 0.0046 17.4 0.1 5 7.6 0.0 3.5 3 0 0 3 3 3 1 MG2 domain Peptidase_C1_2 PF03051.15 gi|88601941|ref|YP_502119.1| - 0.034 12.9 0.2 3.6 6.2 0.0 2.1 2 0 0 2 2 2 0 Peptidase C1-like family Paramyxo_PNT PF14320.6 gi|88601941|ref|YP_502119.1| - 0.072 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoprotein P region PNT disordered PKD_3 PF16820.5 gi|88601941|ref|YP_502119.1| - 0.29 10.9 1.5 17 5.3 0.1 2.5 2 0 0 2 2 2 0 PKD-like domain MFS_1 PF07690.16 gi|88601942|ref|YP_502120.1| - 2.8e-45 154.8 69.3 1.4e-36 126.1 40.9 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88601942|ref|YP_502120.1| - 2.5e-05 23.3 38.4 0.0001 21.3 6.5 3.1 1 1 2 3 3 3 2 Sugar (and other) transporter MarR_2 PF12802.7 gi|88601943|ref|YP_502121.1| - 4.4e-09 36.1 0.0 7.2e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|88601943|ref|YP_502121.1| - 8e-08 32.1 0.0 1.8e-07 31.0 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|88601943|ref|YP_502121.1| - 1.3e-07 32.0 0.0 3.2e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|88601943|ref|YP_502121.1| - 1.5e-07 30.9 0.0 3.2e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|88601943|ref|YP_502121.1| - 9.3e-06 25.7 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|88601943|ref|YP_502121.1| - 0.0031 17.7 0.0 0.0065 16.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|88601943|ref|YP_502121.1| - 0.0049 16.7 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|88601943|ref|YP_502121.1| - 0.0067 16.7 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|88601943|ref|YP_502121.1| - 0.0075 16.1 0.0 0.021 14.7 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|88601943|ref|YP_502121.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4618 PF15397.6 gi|88601943|ref|YP_502121.1| - 0.011 15.1 0.5 0.016 14.7 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DASH_Dad4 PF08650.10 gi|88601943|ref|YP_502121.1| - 0.054 13.5 0.6 1 9.4 0.2 2.3 1 1 1 2 2 2 0 DASH complex subunit Dad4 HTH_AsnC-type PF13404.6 gi|88601943|ref|YP_502121.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RraA-like PF03737.15 gi|88601944|ref|YP_502122.1| - 1.9e-41 141.7 2.5 2.1e-41 141.6 0.8 1.9 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|88601944|ref|YP_502122.1| - 2.6e-22 79.6 1.2 4.8e-22 78.7 1.2 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.12 gi|88601944|ref|YP_502122.1| - 9e-05 21.8 2.4 0.0002 20.6 0.3 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF561) NanE PF04131.14 gi|88601944|ref|YP_502122.1| - 0.00012 21.3 1.3 0.00012 21.3 1.3 1.6 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|88601944|ref|YP_502122.1| - 0.00013 21.3 1.8 0.00035 20.0 1.8 1.8 1 1 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|88601944|ref|YP_502122.1| - 0.0019 17.7 6.4 0.0076 15.7 6.3 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|88601944|ref|YP_502122.1| - 0.003 17.1 0.4 0.003 17.1 0.4 2.4 3 1 0 3 3 3 1 Histidine biosynthesis protein PEP_mutase PF13714.6 gi|88601944|ref|YP_502122.1| - 0.0084 15.6 0.5 0.042 13.3 0.1 2.1 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase LamB_YcsF PF03746.16 gi|88601944|ref|YP_502122.1| - 0.012 15.3 0.2 0.14 11.8 0.1 2.5 2 0 0 2 2 2 0 LamB/YcsF family IMPDH PF00478.25 gi|88601944|ref|YP_502122.1| - 0.014 14.4 7.7 0.026 13.5 1.5 2.8 2 2 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|88601944|ref|YP_502122.1| - 0.015 14.2 2.6 0.021 13.7 0.7 2.2 2 1 0 2 2 2 0 Tryptophan synthase alpha chain Peptidase_S8 PF00082.22 gi|88601945|ref|YP_502123.1| - 1.8e-49 168.6 8.3 2.6e-49 168.1 8.3 1.2 1 0 0 1 1 1 1 Subtilase family Peptidase_S8_N PF16361.5 gi|88601945|ref|YP_502123.1| - 6.8e-05 23.4 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 N-terminal of Subtilase family Dockerin_1 PF00404.18 gi|88601945|ref|YP_502123.1| - 8.9e-05 22.6 0.9 0.00054 20.1 0.1 2.5 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|88601945|ref|YP_502123.1| - 0.34 11.0 9.4 2.3 8.4 0.0 4.1 3 1 0 3 3 3 0 EF-hand domain Nitroreductase PF00881.24 gi|88601946|ref|YP_502124.1| - 5.3e-26 91.7 0.1 9.2e-14 51.9 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|88601946|ref|YP_502124.1| - 1.3e-15 57.6 0.5 3.2e-05 23.6 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase AAA-ATPase_like PF09820.9 gi|88601947|ref|YP_502125.1| - 1.6e-98 329.6 0.0 2.2e-98 329.1 0.0 1.2 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88601947|ref|YP_502125.1| - 2.7e-29 101.1 0.0 4.4e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PAS_3 PF08447.12 gi|88601947|ref|YP_502125.1| - 0.054 13.8 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 PAS fold DUF3903 PF13043.6 gi|88601947|ref|YP_502125.1| - 0.16 11.7 0.1 0.41 10.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3903) DUF3821 PF12863.7 gi|88601948|ref|YP_502126.1| - 7.5e-53 179.5 0.0 1e-52 179.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) PMSR PF01625.21 gi|88601949|ref|YP_502127.1| - 1.1e-62 210.8 0.6 1.2e-62 210.6 0.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase CdvA PF18822.1 gi|88601949|ref|YP_502127.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 CdvA-like coiled-coil domain Phosphodiest PF01663.22 gi|88601950|ref|YP_502128.1| - 1.5e-19 70.8 0.3 1.2e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|88601950|ref|YP_502128.1| - 1.4e-10 41.0 0.1 1.4e-06 27.9 0.1 2.4 2 1 1 3 3 3 2 Sulfatase Metalloenzyme PF01676.18 gi|88601950|ref|YP_502128.1| - 0.022 14.1 0.0 0.048 13.0 0.0 1.5 2 0 0 2 2 2 0 Metalloenzyme superfamily DUF229 PF02995.17 gi|88601950|ref|YP_502128.1| - 0.061 11.9 0.0 0.085 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Ribosomal_60s PF00428.19 gi|88601951|ref|YP_502129.1| - 2.3e-18 66.5 16.2 2.8e-18 66.3 16.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|88601951|ref|YP_502129.1| - 0.016 15.4 2.6 0.021 15.0 2.6 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3879 PF12995.7 gi|88601951|ref|YP_502129.1| - 0.16 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3879) Ribosomal_L10 PF00466.20 gi|88601952|ref|YP_502130.1| - 8.9e-23 80.3 0.0 1.9e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|88601952|ref|YP_502130.1| - 5.4e-20 71.2 0.2 8.9e-20 70.5 0.2 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P DbpA PF03880.15 gi|88601952|ref|YP_502130.1| - 0.011 15.7 0.3 0.073 13.1 0.0 2.4 3 0 0 3 3 3 0 DbpA RNA binding domain Ribosomal_L1 PF00687.21 gi|88601953|ref|YP_502131.1| - 2.1e-44 151.7 0.0 2.5e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|88601954|ref|YP_502132.1| - 6.2e-24 83.6 0.7 1.1e-23 82.8 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|88601954|ref|YP_502132.1| - 5.6e-22 78.0 0.3 9.1e-22 77.4 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|88601955|ref|YP_502133.1| - 1.4e-21 76.2 0.0 2.2e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|88601955|ref|YP_502133.1| - 4.9e-07 29.5 2.8 2.3e-05 24.2 0.3 2.6 2 0 0 2 2 2 2 KOW motif Glyco_hydro_65C PF03633.15 gi|88601955|ref|YP_502133.1| - 0.018 14.9 0.4 0.038 13.9 0.4 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DUF4158 PF13700.6 gi|88601955|ref|YP_502133.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) SecE PF00584.20 gi|88601956|ref|YP_502134.1| - 3.2e-07 30.2 0.1 4.1e-07 29.8 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Tubulin PF00091.25 gi|88601957|ref|YP_502135.1| - 9.2e-44 150.0 0.0 1.6e-43 149.2 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|88601957|ref|YP_502135.1| - 4e-34 116.8 0.5 1e-33 115.5 0.5 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|88601957|ref|YP_502135.1| - 0.014 15.3 0.6 0.037 13.9 0.1 1.9 2 0 0 2 2 2 0 NAD(P)H-binding Ldh_1_N PF00056.23 gi|88601957|ref|YP_502135.1| - 0.057 13.5 0.3 2.5 8.2 0.4 2.5 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Tubulin_2 PF13809.6 gi|88601957|ref|YP_502135.1| - 0.41 9.8 8.6 0.36 10.0 1.6 2.5 2 1 0 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|88601958|ref|YP_502136.1| - 8.5e-64 214.8 0.0 1.1e-63 214.5 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DDE_Tnp_1 PF01609.21 gi|88601959|ref|YP_502137.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88601959|ref|YP_502137.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88601959|ref|YP_502137.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) MoeA_N PF03453.17 gi|88601960|ref|YP_502138.1| - 2.6e-40 137.8 0.0 4.1e-40 137.1 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|88601960|ref|YP_502138.1| - 1.2e-22 80.1 0.1 2e-22 79.4 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|88601960|ref|YP_502138.1| - 1.5e-11 44.3 0.0 5.2e-10 39.4 0.0 2.7 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like PF12727.7 gi|88601961|ref|YP_502139.1| - 8.1e-52 175.1 0.0 1.9e-51 174.0 0.0 1.6 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.17 gi|88601961|ref|YP_502139.1| - 8.2e-32 110.1 0.0 1.4e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|88601961|ref|YP_502139.1| - 7e-22 77.7 0.1 1.5e-21 76.6 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|88601961|ref|YP_502139.1| - 1.4e-08 34.8 0.0 3.6e-08 33.5 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|88601961|ref|YP_502139.1| - 0.0016 17.8 0.0 0.029 13.7 0.0 2.8 2 1 1 3 3 3 1 LysR substrate binding domain Phosphonate-bd PF12974.7 gi|88601961|ref|YP_502139.1| - 0.027 14.1 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MetW PF07021.12 gi|88601961|ref|YP_502139.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF447 PF04289.12 gi|88601962|ref|YP_502140.1| - 2.6e-52 177.1 0.2 2.9e-52 177.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|88601963|ref|YP_502141.1| - 2.1e-60 204.8 0.0 2.4e-60 204.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF5591 PF17884.1 gi|88601963|ref|YP_502141.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) Dus PF01207.17 gi|88601964|ref|YP_502142.1| - 1.2e-06 27.8 0.0 6.9e-06 25.4 0.0 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|88601964|ref|YP_502142.1| - 0.00012 21.2 0.1 0.0002 20.5 0.1 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|88601964|ref|YP_502142.1| - 0.089 12.2 0.9 2.1 7.6 0.9 2.1 1 1 0 1 1 1 0 Nitronate monooxygenase His_biosynth PF00977.21 gi|88601964|ref|YP_502142.1| - 0.11 12.0 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein CbiX PF01903.17 gi|88601965|ref|YP_502143.1| - 4.9e-28 97.6 0.0 5.6e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|88601965|ref|YP_502143.1| - 2.7e-05 23.6 0.0 2.7e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|88601965|ref|YP_502143.1| - 0.011 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Ferrochelatase TylF PF05711.11 gi|88601966|ref|YP_502144.1| - 0.1 11.9 0.0 0.52 9.5 0.0 1.9 2 0 0 2 2 2 0 Macrocin-O-methyltransferase (TylF) Oxidored_nitro PF00148.19 gi|88601967|ref|YP_502145.1| - 5.2e-17 61.7 0.1 7.5e-17 61.1 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase GATase_3 PF07685.14 gi|88601968|ref|YP_502146.1| - 9.9e-35 119.9 0.0 1.4e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|88601968|ref|YP_502146.1| - 1.5e-16 60.8 0.8 4e-12 46.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|88601968|ref|YP_502146.1| - 2.9e-15 56.5 0.0 6e-15 55.4 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ocr PF08684.10 gi|88601968|ref|YP_502146.1| - 0.0066 16.9 0.1 0.065 13.7 0.1 2.5 3 0 0 3 3 3 1 DNA mimic ocr SNO PF01174.19 gi|88601968|ref|YP_502146.1| - 0.049 13.5 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Aminotran_4 PF01063.19 gi|88601969|ref|YP_502147.1| - 1.4e-59 201.7 0.0 1.6e-59 201.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Lactamase_B PF00753.27 gi|88601970|ref|YP_502148.1| - 2e-24 86.7 0.2 2.4e-24 86.4 0.2 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88601970|ref|YP_502148.1| - 0.00096 18.7 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|88601970|ref|YP_502148.1| - 0.056 13.3 0.1 0.14 12.0 0.0 1.8 2 1 1 3 3 3 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|88601970|ref|YP_502148.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain HTH_34 PF13601.6 gi|88601971|ref|YP_502149.1| - 1.8e-23 82.5 0.0 2.1e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|88601971|ref|YP_502149.1| - 0.00058 19.9 0.0 0.0009 19.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|88601971|ref|YP_502149.1| - 0.011 16.2 0.0 0.02 15.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|88601971|ref|YP_502149.1| - 0.041 13.9 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|88601971|ref|YP_502149.1| - 0.053 13.4 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|88601971|ref|YP_502149.1| - 0.079 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PemK_toxin PF02452.17 gi|88601973|ref|YP_502151.1| - 6.7e-21 74.8 0.0 7.5e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system CcdB PF01845.17 gi|88601973|ref|YP_502151.1| - 0.00016 21.8 0.1 0.00023 21.3 0.1 1.2 1 0 0 1 1 1 1 CcdB protein DUF308 PF03729.13 gi|88601974|ref|YP_502152.1| - 1.5e-17 63.7 50.8 2e-09 37.6 17.0 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) Na_H_Exchanger PF00999.21 gi|88601975|ref|YP_502153.1| - 2.3e-62 211.0 47.6 3.4e-62 210.4 47.6 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MCPsignal PF00015.21 gi|88601976|ref|YP_502154.1| - 3.3e-42 144.2 53.2 1.7e-40 138.6 19.4 5.1 3 1 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88601976|ref|YP_502154.1| - 1.8e-29 102.6 6.3 1.8e-29 102.6 6.3 4.5 4 2 0 5 5 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88601976|ref|YP_502154.1| - 3.5e-12 46.5 3.0 3.2e-08 33.8 0.2 5.2 4 2 1 5 5 5 1 HAMP domain TarH PF02203.15 gi|88601976|ref|YP_502154.1| - 3.1e-09 37.0 0.1 3.1e-09 37.0 0.1 3.3 4 0 0 4 4 3 1 Tar ligand binding domain homologue DUF948 PF06103.11 gi|88601976|ref|YP_502154.1| - 1.7e-05 25.0 31.0 0.25 11.6 1.9 6.8 4 2 2 6 6 6 3 Bacterial protein of unknown function (DUF948) Arg_decarb_HB PF17810.1 gi|88601976|ref|YP_502154.1| - 0.0053 17.0 0.4 0.89 9.9 0.0 3.6 2 1 1 3 3 3 1 Arginine decarboxylase helical bundle domain UPF0160 PF03690.13 gi|88601976|ref|YP_502154.1| - 0.017 14.8 0.0 0.017 14.8 0.0 2.7 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0160) HAMP_N3 PF18575.1 gi|88601976|ref|YP_502154.1| - 0.053 13.1 0.1 0.35 10.5 0.0 2.6 2 0 0 2 2 2 0 HAMP N-terminal domain 3 DUF4404 PF14357.6 gi|88601976|ref|YP_502154.1| - 0.1 13.3 0.1 0.1 13.3 0.1 4.4 3 2 1 4 4 4 0 Domain of unknown function (DUF4404) Mce4_CUP1 PF11887.8 gi|88601976|ref|YP_502154.1| - 0.14 11.6 8.3 0.025 14.1 1.4 2.6 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative CREPT PF16566.5 gi|88601976|ref|YP_502154.1| - 0.15 12.3 0.1 0.15 12.3 0.1 3.5 4 1 1 5 5 4 0 Cell-cycle alteration and expression-elevated protein in tumour BLOC1_2 PF10046.9 gi|88601976|ref|YP_502154.1| - 0.2 11.9 23.6 1.3 9.4 0.7 6.3 4 2 2 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.6 gi|88601976|ref|YP_502154.1| - 0.59 10.5 22.2 0.061 13.7 1.5 5.7 3 2 2 5 5 4 0 Syntaxin-like protein DASH_Dad2 PF08654.10 gi|88601976|ref|YP_502154.1| - 0.72 10.3 20.9 0.11 12.9 1.9 4.5 3 2 1 4 4 3 0 DASH complex subunit Dad2 IZUMO PF15005.6 gi|88601976|ref|YP_502154.1| - 0.73 10.3 2.2 13 6.3 0.1 3.0 2 1 0 2 2 2 0 Izumo sperm-egg fusion, Ig domain-associated FUSC PF04632.12 gi|88601976|ref|YP_502154.1| - 2.4 6.6 5.6 1.3 7.5 0.5 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family ABC2_membrane_3 PF12698.7 gi|88601976|ref|YP_502154.1| - 9.2 5.3 10.2 2.3 7.2 5.3 2.3 2 1 0 2 2 2 0 ABC-2 family transporter protein AA_permease_2 PF13520.6 gi|88601977|ref|YP_502155.1| - 5e-33 114.6 52.5 7.7e-33 113.9 52.5 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|88601977|ref|YP_502155.1| - 2.8e-20 72.4 53.4 4.8e-20 71.6 53.4 1.3 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|88601977|ref|YP_502155.1| - 1.4e-11 43.8 17.5 1.4e-11 43.8 17.5 2.3 2 1 0 2 2 2 1 Spore germination protein TraQ PF09679.10 gi|88601977|ref|YP_502155.1| - 1.9 8.5 8.9 1.2 9.0 1.3 2.8 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) GyrI-like PF06445.15 gi|88601978|ref|YP_502156.1| - 3.2e-27 95.7 0.0 4.6e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|88601978|ref|YP_502156.1| - 9.1e-17 61.6 0.0 1.3e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 Integron-associated effector binding protein MerR_1 PF13411.6 gi|88601978|ref|YP_502156.1| - 4.6e-11 42.7 0.3 2.7e-10 40.2 0.0 2.1 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 gi|88601978|ref|YP_502156.1| - 1.9e-05 24.3 0.3 0.00013 21.6 0.1 2.2 2 0 0 2 2 2 1 MerR family regulatory protein MerR-DNA-bind PF09278.11 gi|88601978|ref|YP_502156.1| - 0.00031 21.2 1.5 0.00062 20.2 1.5 1.5 1 0 0 1 1 1 1 MerR, DNA binding UBA PF00627.31 gi|88601978|ref|YP_502156.1| - 0.078 12.9 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 UBA/TS-N domain RACo_C_ter PF14574.6 gi|88601979|ref|YP_502157.1| - 4.9e-87 291.3 0.1 2.1e-86 289.2 0.0 1.9 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|88601979|ref|YP_502157.1| - 4.7e-48 163.0 0.0 8.2e-48 162.2 0.0 1.4 1 0 0 1 1 1 1 RACo middle region Fer2 PF00111.27 gi|88601979|ref|YP_502157.1| - 2.6e-10 40.1 2.9 6.7e-10 38.8 2.9 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BcrAD_BadFG PF01869.20 gi|88601979|ref|YP_502157.1| - 0.014 14.9 0.1 0.041 13.4 0.0 1.7 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|88601979|ref|YP_502157.1| - 0.18 11.3 0.1 0.42 10.1 0.0 1.6 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain CdhD PF03599.16 gi|88601980|ref|YP_502158.1| - 1.5e-116 389.3 0.0 1.8e-116 389.0 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|88601980|ref|YP_502158.1| - 1.8e-14 53.1 3.8 3.6e-14 52.1 3.8 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Pterin_bind PF00809.22 gi|88601980|ref|YP_502158.1| - 0.0052 16.5 0.0 0.23 11.1 0.0 2.3 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|88601981|ref|YP_502159.1| - 2.1e-49 168.3 0.0 3.8e-49 167.4 0.0 1.4 1 1 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Phosphodiest PF01663.22 gi|88601981|ref|YP_502159.1| - 0.038 13.6 0.0 0.051 13.2 0.0 1.1 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase His_biosynth PF00977.21 gi|88601981|ref|YP_502159.1| - 0.2 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein CdhC PF03598.15 gi|88601982|ref|YP_502160.1| - 1.4e-62 210.1 0.1 1.9e-62 209.7 0.1 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.16 gi|88601983|ref|YP_502161.1| - 6.6e-23 81.3 0.0 9.3e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|88601983|ref|YP_502161.1| - 7.8e-06 25.7 0.0 2.1e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|88601984|ref|YP_502162.1| - 4.5e-100 335.8 1.3 1.3e-83 281.5 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_8 PF13183.6 gi|88601984|ref|YP_502162.1| - 8.2e-08 32.6 0.5 0.02 15.3 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88601984|ref|YP_502162.1| - 1.5e-05 25.4 8.8 0.0023 18.5 13.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88601984|ref|YP_502162.1| - 4.4e-05 23.5 10.1 4.4e-05 23.5 10.1 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88601984|ref|YP_502162.1| - 0.00029 21.6 4.6 0.013 16.3 0.4 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88601984|ref|YP_502162.1| - 0.00036 21.4 4.1 0.15 13.0 0.4 2.8 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88601984|ref|YP_502162.1| - 0.00058 20.4 13.4 0.0078 16.7 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88601984|ref|YP_502162.1| - 0.0018 18.6 13.9 0.092 13.3 2.2 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88601984|ref|YP_502162.1| - 0.0058 16.7 15.3 0.0058 16.7 15.3 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88601984|ref|YP_502162.1| - 0.0073 16.3 15.8 0.045 13.8 3.1 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|88601984|ref|YP_502162.1| - 0.016 15.0 5.9 0.16 11.7 6.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CODH_A_N PF18537.1 gi|88601984|ref|YP_502162.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_15 PF13459.6 gi|88601984|ref|YP_502162.1| - 0.37 11.6 5.1 3.5 8.5 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|88601984|ref|YP_502162.1| - 0.52 10.5 24.7 0.042 13.9 2.2 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|88601984|ref|YP_502162.1| - 3.1 7.8 30.7 0.11 12.4 4.1 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88601984|ref|YP_502162.1| - 6.8 6.9 19.5 0.16 12.1 1.0 3.1 3 0 0 3 3 2 0 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 gi|88601985|ref|YP_502163.1| - 7.9e-10 38.6 0.0 0.00065 19.2 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|88601985|ref|YP_502163.1| - 2.6e-08 34.0 0.0 1e-07 32.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|88601985|ref|YP_502163.1| - 1.6e-05 24.9 0.0 9.8e-05 22.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|88601985|ref|YP_502163.1| - 4.7e-05 23.3 0.0 0.00012 22.0 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 gi|88601985|ref|YP_502163.1| - 0.00031 20.1 0.0 0.00058 19.1 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|88601985|ref|YP_502163.1| - 0.0029 17.5 0.0 0.016 15.0 0.0 1.9 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein MipZ PF09140.11 gi|88601985|ref|YP_502163.1| - 0.0072 15.6 0.0 0.13 11.5 0.0 2.0 1 1 1 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|88601985|ref|YP_502163.1| - 0.029 14.1 0.1 0.043 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|88601985|ref|YP_502163.1| - 0.057 13.0 0.0 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ParA PF10609.9 gi|88601985|ref|YP_502163.1| - 0.21 11.0 0.0 2.9 7.3 0.0 2.4 2 1 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|88601986|ref|YP_502164.1| - 2.2e-17 63.3 0.0 3.3e-17 62.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|88601986|ref|YP_502164.1| - 5.8e-09 35.8 0.9 3.9e-05 23.2 0.2 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|88601986|ref|YP_502164.1| - 2.2e-08 34.2 0.5 7.1e-08 32.6 0.5 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|88601986|ref|YP_502164.1| - 1.5e-07 30.9 0.6 6.2e-07 28.9 0.2 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|88601986|ref|YP_502164.1| - 1.6e-07 31.0 1.7 3.4e-06 26.7 1.7 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|88601986|ref|YP_502164.1| - 4.8e-05 22.9 0.0 0.023 14.2 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|88601986|ref|YP_502164.1| - 0.02 14.6 0.3 0.092 12.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|88601986|ref|YP_502164.1| - 0.082 13.3 0.1 0.17 12.2 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|88601986|ref|YP_502164.1| - 0.094 12.6 0.1 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|88601986|ref|YP_502164.1| - 0.095 12.4 1.6 0.4 10.4 0.3 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|88601986|ref|YP_502164.1| - 0.15 11.2 0.6 0.34 10.0 0.4 1.6 1 1 1 2 2 2 0 PIF1-like helicase IstB_IS21 PF01695.17 gi|88601986|ref|YP_502164.1| - 0.17 11.6 0.9 0.21 11.3 0.2 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF3297 PF11730.8 gi|88601987|ref|YP_502165.1| - 0.061 13.2 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3297) 2TM PF13239.6 gi|88601987|ref|YP_502165.1| - 2.7 8.4 9.4 1.4 9.3 1.5 2.9 3 0 0 3 3 3 0 2TM domain Peripla_BP_6 PF13458.6 gi|88601988|ref|YP_502166.1| - 3e-20 73.2 0.0 3.8e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|88601988|ref|YP_502166.1| - 1.4e-05 24.4 0.0 1.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_hydro_39 PF01229.17 gi|88601989|ref|YP_502167.1| - 3.4e-18 65.5 1.2 1.1e-17 63.9 1.2 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 39 Glyco_hydro_44 PF12891.7 gi|88601989|ref|YP_502167.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Glycoside hydrolase family 44 Polysacc_deac_1 PF01522.21 gi|88601990|ref|YP_502168.1| - 0.046 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 Polysaccharide deacetylase DUF2334 PF10096.9 gi|88601990|ref|YP_502168.1| - 0.062 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) HsdM_N PF12161.8 gi|88601990|ref|YP_502168.1| - 0.07 13.8 0.0 0.75 10.4 0.0 2.1 2 0 0 2 2 2 0 HsdM N-terminal domain DDE_Tnp_1_6 PF13751.6 gi|88601991|ref|YP_502169.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88601991|ref|YP_502169.1| - 3.5e-12 46.4 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88601991|ref|YP_502169.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88601991|ref|YP_502169.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain PAS_3 PF08447.12 gi|88601994|ref|YP_502172.1| - 4.3e-09 36.5 0.0 7.4e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|88601994|ref|YP_502172.1| - 4.4e-09 36.8 0.1 7.7e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88601994|ref|YP_502172.1| - 0.0056 16.7 0.7 0.013 15.5 0.2 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|88601994|ref|YP_502172.1| - 0.08 12.9 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold Aldo_ket_red PF00248.21 gi|88601995|ref|YP_502173.1| - 1.9e-33 116.0 0.0 1e-31 110.2 0.0 2.1 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_9 PF13187.6 gi|88601995|ref|YP_502173.1| - 9.1e-09 35.4 5.6 1.6e-08 34.6 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88601995|ref|YP_502173.1| - 1.2e-08 35.4 4.7 2.8e-08 34.2 4.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88601995|ref|YP_502173.1| - 1.2e-06 28.7 8.2 0.00042 20.5 1.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88601995|ref|YP_502173.1| - 7e-06 26.5 6.6 1.2e-05 25.8 5.7 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88601995|ref|YP_502173.1| - 8.6e-05 22.2 14.3 0.0015 18.3 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88601995|ref|YP_502173.1| - 0.00017 21.6 6.4 0.066 13.4 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88601995|ref|YP_502173.1| - 0.00075 19.9 9.1 0.0096 16.4 10.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88601995|ref|YP_502173.1| - 0.00075 20.3 2.8 0.076 13.9 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88601995|ref|YP_502173.1| - 0.0037 17.3 12.6 0.072 13.2 13.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88601995|ref|YP_502173.1| - 0.0097 15.9 13.4 0.15 12.2 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88601995|ref|YP_502173.1| - 0.028 14.9 14.0 0.21 12.2 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88601995|ref|YP_502173.1| - 0.081 13.1 16.3 0.74 10.0 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4940 PF16298.5 gi|88601995|ref|YP_502173.1| - 0.086 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4940) Fer4_16 PF13484.6 gi|88601995|ref|YP_502173.1| - 0.55 11.2 14.8 5.9 7.9 14.9 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|88601995|ref|YP_502173.1| - 0.89 9.3 9.9 0.4 10.5 1.5 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|88601995|ref|YP_502173.1| - 9 7.5 17.0 9.5 7.4 6.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Raf1_HTH PF18579.1 gi|88601996|ref|YP_502174.1| - 0.16 11.7 0.0 18 5.1 0.0 2.5 2 0 0 2 2 2 0 Rubisco accumulation factor 1 helix turn helix domain PDZ_6 PF17820.1 gi|88601997|ref|YP_502175.1| - 0.083 12.8 0.1 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 PDZ domain HTH_11 PF08279.12 gi|88601998|ref|YP_502176.1| - 0.0029 17.5 0.1 0.0061 16.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|88601998|ref|YP_502176.1| - 0.017 15.1 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AAA_29 PF13555.6 gi|88601998|ref|YP_502176.1| - 0.017 14.8 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88601998|ref|YP_502176.1| - 0.06 13.7 0.1 0.29 11.5 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|88601998|ref|YP_502176.1| - 0.089 12.1 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|88601998|ref|YP_502176.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|88601998|ref|YP_502176.1| - 0.13 12.5 0.0 0.76 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|88601998|ref|YP_502176.1| - 0.17 11.4 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DDE_Tnp_IS1 PF03400.13 gi|88601999|ref|YP_502177.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88601999|ref|YP_502177.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88601999|ref|YP_502177.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88602000|ref|YP_502178.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88602000|ref|YP_502178.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88602000|ref|YP_502178.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88602000|ref|YP_502178.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ish1 PF10281.9 gi|88602001|ref|YP_502179.1| - 0.07 13.4 0.0 0.67 10.3 0.0 2.3 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Tli4_C PF18426.1 gi|88602002|ref|YP_502180.1| - 0.098 13.0 0.0 0.11 12.8 0.0 1.0 1 0 0 1 1 1 0 Tle cognate immunity protein 4 C-terminal domain MalM PF07148.12 gi|88602004|ref|YP_502182.1| - 0.063 13.0 0.0 0.079 12.7 0.0 1.1 1 0 0 1 1 1 0 Maltose operon periplasmic protein precursor (MalM) HicA_toxin PF07927.12 gi|88602005|ref|YP_502183.1| - 2.5e-14 53.1 0.4 2.9e-14 52.9 0.4 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|88602006|ref|YP_502184.1| - 1.6e-08 34.7 0.0 2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|88602006|ref|YP_502184.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1902) Unstab_antitox PF09720.10 gi|88602007|ref|YP_502185.1| - 2.4e-14 53.1 0.1 2.9e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 Putative addiction module component ParE_toxin PF05016.15 gi|88602008|ref|YP_502186.1| - 0.00026 21.6 0.0 0.0003 21.3 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Phage_Mu_Gam PF07352.12 gi|88602009|ref|YP_502187.1| - 0.032 14.1 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein PHD_like PF12910.7 gi|88602009|ref|YP_502187.1| - 0.047 13.7 0.3 0.052 13.6 0.3 1.2 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system EHD_N PF16880.5 gi|88602009|ref|YP_502187.1| - 0.099 12.6 2.4 0.15 12.0 2.4 1.3 1 0 0 1 1 1 0 N-terminal EH-domain containing protein HicB_lk_antitox PF15919.5 gi|88602011|ref|YP_502189.1| - 4.7e-09 36.4 0.1 5.4e-09 36.2 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|88602011|ref|YP_502189.1| - 0.0098 15.9 0.0 0.01 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) RQC PF09382.10 gi|88602012|ref|YP_502190.1| - 0.058 13.2 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 RQC domain DDE_Tnp_1 PF01609.21 gi|88602013|ref|YP_502191.1| - 3.7e-24 85.6 0.0 7.9e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|88602013|ref|YP_502191.1| - 0.04 13.9 0.3 0.31 11.0 0.1 2.4 3 0 0 3 3 3 0 Transposase DDE domain Hist_deacetyl PF00850.19 gi|88602015|ref|YP_502193.1| - 2.5e-77 260.4 0.3 6.9e-75 252.4 0.3 2.0 1 1 0 1 1 1 1 Histone deacetylase domain TPR_19 PF14559.6 gi|88602016|ref|YP_502194.1| - 1.7e-13 50.8 13.6 0.0022 18.5 0.4 8.2 8 1 2 10 10 10 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602016|ref|YP_502194.1| - 6.6e-10 39.0 19.1 0.15 13.0 0.0 8.8 7 2 3 10 10 10 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602016|ref|YP_502194.1| - 3e-08 33.8 13.5 0.55 10.5 0.0 6.7 6 1 1 7 7 7 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|88602016|ref|YP_502194.1| - 1.7e-07 31.8 19.9 2.3 9.0 4.5 7.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602016|ref|YP_502194.1| - 2.4e-07 30.8 15.3 0.017 15.2 0.5 6.0 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88602016|ref|YP_502194.1| - 1.9e-06 27.7 0.1 0.73 9.5 0.9 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 gi|88602016|ref|YP_502194.1| - 3.9e-05 23.9 1.0 0.19 12.1 0.7 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602016|ref|YP_502194.1| - 6.5e-05 22.7 17.5 0.85 9.9 0.0 8.3 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602016|ref|YP_502194.1| - 0.00048 19.4 4.5 0.12 11.5 0.4 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602016|ref|YP_502194.1| - 0.037 14.1 0.4 0.75 9.9 0.2 2.9 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.28 gi|88602016|ref|YP_502194.1| - 0.056 13.3 12.2 6.2 6.8 0.0 6.1 7 0 0 7 7 6 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88602016|ref|YP_502194.1| - 0.11 13.0 0.6 4 7.9 0.4 2.7 2 1 0 2 2 2 0 Alkyl sulfatase dimerisation TPR_4 PF07721.14 gi|88602016|ref|YP_502194.1| - 0.17 12.6 7.8 1.1e+02 3.8 0.1 5.7 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602016|ref|YP_502194.1| - 1.3 9.8 9.5 25 5.8 0.2 5.5 6 0 0 6 6 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602017|ref|YP_502195.1| - 1.2e-16 59.4 6.7 0.00016 21.5 0.4 6.0 6 1 1 7 7 6 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602017|ref|YP_502195.1| - 1.2e-14 53.3 2.4 4.1e-05 23.2 0.2 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602017|ref|YP_502195.1| - 1.3e-13 51.4 7.9 7e-07 29.8 1.1 5.2 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602017|ref|YP_502195.1| - 1.5e-12 47.8 6.8 0.00024 21.5 1.0 4.4 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602017|ref|YP_502195.1| - 2.2e-10 40.4 7.6 0.052 14.4 0.1 6.0 2 2 4 6 6 6 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602017|ref|YP_502195.1| - 6e-10 38.8 7.0 0.033 14.6 0.9 5.5 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602017|ref|YP_502195.1| - 2.1e-09 36.9 4.2 0.004 17.3 0.1 5.1 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602017|ref|YP_502195.1| - 2.8e-09 37.0 8.0 0.00014 22.0 0.2 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602017|ref|YP_502195.1| - 2.6e-06 27.6 11.0 0.0013 19.0 1.0 4.0 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602017|ref|YP_502195.1| - 7e-06 25.6 10.4 0.21 11.3 1.7 5.6 3 2 3 6 6 6 2 TPR repeat ANAPC3 PF12895.7 gi|88602017|ref|YP_502195.1| - 2.1e-05 24.6 0.7 0.0093 16.2 0.5 3.2 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|88602017|ref|YP_502195.1| - 3e-05 23.7 3.3 0.89 9.7 0.1 5.7 5 1 1 6 6 6 1 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|88602017|ref|YP_502195.1| - 0.001 17.9 0.0 0.0016 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein kinase G tetratricopeptide repeat TPR_20 PF14561.6 gi|88602017|ref|YP_502195.1| - 0.0013 19.0 1.8 0.02 15.2 0.1 2.7 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602017|ref|YP_502195.1| - 0.0066 15.7 0.3 0.14 11.3 0.1 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat HEAT_2 PF13646.6 gi|88602017|ref|YP_502195.1| - 0.015 15.7 2.8 0.61 10.5 0.2 3.5 3 1 1 4 4 4 0 HEAT repeats RPN7 PF10602.9 gi|88602017|ref|YP_502195.1| - 0.032 13.9 0.0 0.86 9.3 0.0 2.5 3 0 0 3 3 3 0 26S proteasome subunit RPN7 Wzy_C_2 PF11846.8 gi|88602017|ref|YP_502195.1| - 0.037 14.0 0.0 2.6 7.9 0.0 2.4 1 1 1 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TPR_6 PF13174.6 gi|88602017|ref|YP_502195.1| - 0.044 14.4 0.5 58 4.6 0.0 4.6 5 0 0 5 5 3 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|88602017|ref|YP_502195.1| - 0.064 13.5 1.2 1.8 8.8 0.1 3.0 2 1 1 3 3 3 0 Tetratrico peptide repeat TPR_10 PF13374.6 gi|88602017|ref|YP_502195.1| - 0.12 12.3 8.1 28 4.7 0.0 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|88602017|ref|YP_502195.1| - 0.15 11.7 0.2 19 4.9 0.1 3.2 3 1 1 4 4 4 0 Bacterial type III secretion protein (HrpB1_HrpK) VWA_2 PF13519.6 gi|88602018|ref|YP_502196.1| - 5.8e-05 23.7 0.0 0.00013 22.5 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|88602018|ref|YP_502196.1| - 0.00029 21.1 0.3 0.0011 19.3 0.3 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|88602018|ref|YP_502196.1| - 0.00031 20.2 0.0 0.00055 19.4 0.0 1.4 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Cas_NE0113 PF09623.10 gi|88602019|ref|YP_502197.1| - 2.6e-41 141.6 0.0 3.6e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_APE2256 PF09651.10 gi|88602019|ref|YP_502197.1| - 0.0045 16.9 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Rad21_Rec8_N PF04825.13 gi|88602019|ref|YP_502197.1| - 0.18 12.0 0.0 0.28 11.4 0.0 1.2 1 0 0 1 1 1 0 N terminus of Rad21 / Rec8 like protein DUF3781 PF12636.7 gi|88602020|ref|YP_502198.1| - 0.074 12.9 0.1 0.18 11.7 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3781) CM2 PF03021.14 gi|88602021|ref|YP_502199.1| - 0.028 14.3 0.1 0.053 13.3 0.1 1.6 1 0 0 1 1 1 0 Influenza C virus M2 protein DUF5305 PF17231.2 gi|88602021|ref|YP_502199.1| - 0.039 13.3 2.3 0.062 12.7 2.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Tubulin_2 PF13809.6 gi|88602022|ref|YP_502200.1| - 2.5e-23 82.8 0.0 5.5e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Tubulin like Tubulin PF00091.25 gi|88602022|ref|YP_502200.1| - 5.3e-06 26.8 0.7 0.0011 19.2 0.2 2.5 2 0 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain HD PF01966.22 gi|88602023|ref|YP_502201.1| - 4e-10 40.0 0.6 1e-09 38.7 0.6 1.7 1 0 0 1 1 1 1 HD domain Cas_DxTHG PF09455.10 gi|88602024|ref|YP_502202.1| - 1.9e-77 261.3 0.0 2.2e-77 261.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.10 gi|88602025|ref|YP_502203.1| - 2.7e-69 234.5 0.0 3.1e-69 234.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family HEPN_Apea PF18739.1 gi|88602025|ref|YP_502203.1| - 0.0021 18.5 0.1 0.013 16.0 0.1 2.1 2 0 0 2 2 2 1 Apea-like HEPN Zn_Tnp_IS1 PF03811.13 gi|88602026|ref|YP_502204.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88602026|ref|YP_502204.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88602026|ref|YP_502204.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88602026|ref|YP_502204.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DDE_Tnp_IS1 PF03400.13 gi|88602027|ref|YP_502205.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88602027|ref|YP_502205.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88602027|ref|YP_502205.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A CRISPR_Cas2 PF09827.9 gi|88602028|ref|YP_502206.1| - 1e-19 70.4 0.4 1.3e-19 70.2 0.4 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|88602029|ref|YP_502207.1| - 7.4e-66 222.2 0.0 8.7e-66 221.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Metallophos PF00149.28 gi|88602030|ref|YP_502208.1| - 2.2e-10 41.4 1.7 5.8e-10 40.0 1.7 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|88602030|ref|YP_502208.1| - 2.3e-06 27.9 0.0 6.2e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Transketolase_N PF00456.21 gi|88602030|ref|YP_502208.1| - 0.035 13.0 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain DNA_pol_E_B PF04042.16 gi|88602030|ref|YP_502208.1| - 0.18 11.1 0.0 0.75 9.1 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase alpha/epsilon subunit B AAA_27 PF13514.6 gi|88602031|ref|YP_502209.1| - 1.8e-22 80.0 0.0 1.8e-22 80.0 0.0 3.6 3 1 0 4 4 4 1 AAA domain AAA_23 PF13476.6 gi|88602031|ref|YP_502209.1| - 6.2e-15 56.2 4.9 6.2e-15 56.2 4.9 8.2 3 3 1 4 4 4 1 AAA domain SMC_N PF02463.19 gi|88602031|ref|YP_502209.1| - 6.4e-08 32.3 0.0 5.1e-07 29.3 0.0 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88602031|ref|YP_502209.1| - 0.0027 17.4 0.0 0.0058 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0242 PF06785.11 gi|88602031|ref|YP_502209.1| - 0.0029 17.7 12.2 0.0029 17.7 12.2 7.6 5 2 1 6 6 6 2 Uncharacterised protein family (UPF0242) N-terminus TMF_TATA_bd PF12325.8 gi|88602031|ref|YP_502209.1| - 0.0038 17.4 4.8 0.0038 17.4 4.8 9.8 7 3 1 9 9 9 1 TATA element modulatory factor 1 TATA binding DUF3375 PF11855.8 gi|88602031|ref|YP_502209.1| - 0.0054 15.7 3.0 0.0054 15.7 3.0 5.9 6 0 0 6 6 6 2 Protein of unknown function (DUF3375) DUF3800 PF12686.7 gi|88602031|ref|YP_502209.1| - 0.016 15.8 9.0 1.6e+03 -0.3 8.9 5.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) ABC_tran PF00005.27 gi|88602031|ref|YP_502209.1| - 0.35 11.4 0.0 0.35 11.4 0.0 6.1 5 1 1 6 6 6 0 ABC transporter AAA_18 PF13238.6 gi|88602031|ref|YP_502209.1| - 1 9.9 5.6 1.1 9.9 0.0 3.8 3 1 1 4 4 4 0 AAA domain PDDEXK_1 PF12705.7 gi|88602032|ref|YP_502210.1| - 1.2e-18 67.9 0.0 1.8e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|88602032|ref|YP_502210.1| - 1.6e-05 25.1 0.1 0.00038 20.6 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function DUF83 Pox_VLTF3 PF04947.14 gi|88602032|ref|YP_502210.1| - 0.029 14.1 0.2 0.07 12.9 0.0 1.7 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like ATP-synt_J PF04911.12 gi|88602032|ref|YP_502210.1| - 0.1 12.2 0.1 7.6 6.2 0.1 2.4 2 0 0 2 2 2 0 ATP synthase j chain RAMPs PF03787.15 gi|88602033|ref|YP_502211.1| - 5e-30 105.1 0.0 4.2e-20 72.7 0.0 2.3 2 0 0 2 2 2 2 RAMP superfamily RAMPs PF03787.15 gi|88602034|ref|YP_502212.1| - 1.6e-24 87.1 0.0 2.6e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily DUF4349 PF14257.6 gi|88602035|ref|YP_502213.1| - 0.13 11.7 0.1 0.31 10.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) RAMPs PF03787.15 gi|88602037|ref|YP_502215.1| - 1.4e-10 41.6 0.0 5.7e-10 39.6 0.0 2.0 2 1 0 2 2 2 1 RAMP superfamily Cas_Cas6 PF01881.16 gi|88602037|ref|YP_502215.1| - 0.11 13.0 0.1 3.3 8.2 0.1 2.3 2 0 0 2 2 2 0 CRISPR associated protein Cas6 RAMPs PF03787.15 gi|88602038|ref|YP_502216.1| - 8.9e-16 58.6 0.0 1.3e-15 58.1 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily HD PF01966.22 gi|88602039|ref|YP_502217.1| - 9.8e-08 32.2 0.2 2.2e-07 31.1 0.2 1.6 1 0 0 1 1 1 1 HD domain mCpol PF18182.1 gi|88602039|ref|YP_502217.1| - 0.00013 22.3 0.0 0.36 11.2 0.0 3.5 3 0 0 3 3 3 2 minimal CRISPR polymerase domain ADK_lid PF05191.14 gi|88602039|ref|YP_502217.1| - 0.0012 18.8 0.1 0.0034 17.3 0.1 1.7 1 0 0 1 1 1 1 Adenylate kinase, active site lid DUF3692 PF12469.8 gi|88602039|ref|YP_502217.1| - 0.011 15.9 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 CRISPR-associated protein HD_6 PF18019.1 gi|88602039|ref|YP_502217.1| - 0.045 13.9 0.0 0.085 13.0 0.0 1.4 1 0 0 1 1 1 0 HD domain CRISPR_Cas6 PF10040.9 gi|88602040|ref|YP_502218.1| - 3.8e-10 40.3 0.0 6.2e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 DUF2225 PF09986.9 gi|88602041|ref|YP_502219.1| - 0.01 15.6 6.3 0.026 14.3 6.3 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf_C2H2_10 PF18414.1 gi|88602041|ref|YP_502219.1| - 1.4 8.5 5.7 0.24 11.0 1.2 2.0 2 0 0 2 2 2 0 C2H2 type zinc-finger HTH_17 PF12728.7 gi|88602042|ref|YP_502220.1| - 1.2e-12 47.8 0.1 1.9e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4387 PF14330.6 gi|88602042|ref|YP_502220.1| - 0.067 13.9 0.0 0.089 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) TPR_19 PF14559.6 gi|88602043|ref|YP_502221.1| - 6.9e-34 116.2 12.8 3.4e-05 24.3 0.3 12.1 10 2 2 12 12 12 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602043|ref|YP_502221.1| - 5.7e-24 82.8 16.5 0.26 12.2 0.0 14.6 10 4 7 17 17 15 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602043|ref|YP_502221.1| - 9e-23 78.5 8.4 0.00031 20.6 0.0 12.6 14 0 0 14 14 14 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602043|ref|YP_502221.1| - 3.9e-21 75.4 0.2 0.027 15.1 0.0 10.9 10 1 3 13 13 11 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602043|ref|YP_502221.1| - 1.7e-19 68.3 0.8 0.0084 16.2 0.0 10.2 10 0 0 10 10 10 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602043|ref|YP_502221.1| - 2.6e-19 68.1 8.7 5.8e-05 22.7 0.0 10.3 12 0 0 12 12 11 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602043|ref|YP_502221.1| - 1.7e-18 66.6 4.6 0.0044 17.2 0.1 8.9 6 2 3 9 9 9 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88602043|ref|YP_502221.1| - 2.3e-13 50.1 3.7 0.00016 21.7 0.0 5.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602043|ref|YP_502221.1| - 4.8e-13 49.2 5.6 0.068 13.5 0.0 10.3 11 1 2 13 13 11 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602043|ref|YP_502221.1| - 1.1e-09 37.9 4.0 0.57 10.1 0.0 8.9 10 0 0 10 10 9 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602043|ref|YP_502221.1| - 4.3e-09 36.1 0.1 0.35 11.4 0.0 6.9 7 0 0 7 7 6 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602043|ref|YP_502221.1| - 1.4e-08 34.2 0.0 2.5 7.9 0.1 7.1 5 2 2 7 7 7 1 TPR repeat TPR_7 PF13176.6 gi|88602043|ref|YP_502221.1| - 3.6e-05 23.5 0.9 21 5.4 0.0 7.2 7 0 0 7 7 7 0 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|88602043|ref|YP_502221.1| - 0.00012 20.9 0.0 0.18 10.5 0.0 3.0 3 0 0 3 3 3 2 Protein kinase G tetratricopeptide repeat TPR_20 PF14561.6 gi|88602043|ref|YP_502221.1| - 0.00054 20.2 0.0 1.2 9.5 0.0 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88602043|ref|YP_502221.1| - 0.00095 18.7 0.0 0.052 13.0 0.0 2.7 2 0 0 2 2 2 1 Coatomer epsilon subunit TPR_4 PF07721.14 gi|88602043|ref|YP_502221.1| - 0.0016 18.9 4.0 28 5.7 0.0 7.8 9 0 0 9 9 8 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602043|ref|YP_502221.1| - 0.0017 18.9 6.5 77 4.3 0.0 9.1 12 0 0 12 12 11 0 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602043|ref|YP_502221.1| - 0.011 14.9 0.6 4.5 6.4 0.0 4.5 5 1 1 6 6 6 0 Tetratricopeptide repeat BTAD PF03704.17 gi|88602043|ref|YP_502221.1| - 0.013 15.9 0.8 21 5.6 0.0 4.4 4 1 0 5 5 4 0 Bacterial transcriptional activator domain Alkyl_sulf_dimr PF14863.6 gi|88602043|ref|YP_502221.1| - 0.03 14.8 0.0 0.6 10.6 0.0 3.0 3 0 0 3 3 2 0 Alkyl sulfatase dimerisation NARP1 PF12569.8 gi|88602043|ref|YP_502221.1| - 0.059 12.3 0.1 33 3.2 0.0 4.1 4 0 0 4 4 4 0 NMDA receptor-regulated protein 1 Type_III_YscG PF09477.10 gi|88602043|ref|YP_502221.1| - 0.097 12.7 0.2 28 4.8 0.0 4.3 5 0 0 5 5 4 0 Bacterial type II secretion system chaperone protein (type_III_yscG) PEARLI-4 PF05278.12 gi|88602044|ref|YP_502222.1| - 0.075 12.6 0.0 0.091 12.3 0.0 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) MqsA_antitoxin PF15731.5 gi|88602044|ref|YP_502222.1| - 0.45 10.6 3.4 1.5 9.0 3.4 1.7 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA ParE_toxin PF05016.15 gi|88602045|ref|YP_502223.1| - 5.9e-07 30.0 1.5 7.1e-07 29.8 1.5 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|88602045|ref|YP_502223.1| - 0.011 15.7 0.4 0.033 14.2 0.4 1.7 1 1 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system Transposase_20 PF02371.16 gi|88602048|ref|YP_502226.1| - 2.6e-14 53.3 0.0 6.1e-14 52.1 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DUF1211 PF06736.11 gi|88602049|ref|YP_502227.1| - 3.9e-14 52.8 7.7 3.9e-14 52.8 7.7 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF1211) GerD PF17898.1 gi|88602050|ref|YP_502228.1| - 0.0059 16.6 0.0 0.0074 16.2 0.0 1.1 1 0 0 1 1 1 1 Spore germination GerD central core domain Cauli_DNA-bind PF03310.13 gi|88602050|ref|YP_502228.1| - 0.038 14.0 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein ABC_tran PF00005.27 gi|88602051|ref|YP_502229.1| - 1.2e-36 126.3 0.0 1.7e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|88602051|ref|YP_502229.1| - 9.7e-07 28.4 0.4 0.00049 19.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|88602051|ref|YP_502229.1| - 2.3e-05 24.4 0.1 0.13 12.0 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|88602051|ref|YP_502229.1| - 0.00032 21.2 2.1 0.15 12.6 2.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88602051|ref|YP_502229.1| - 0.00065 19.4 0.3 0.0014 18.4 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|88602051|ref|YP_502229.1| - 0.0011 19.2 0.2 0.028 14.6 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|88602051|ref|YP_502229.1| - 0.013 15.1 0.4 0.087 12.4 0.2 2.2 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|88602051|ref|YP_502229.1| - 0.019 15.3 1.0 0.065 13.6 1.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88602051|ref|YP_502229.1| - 0.029 14.3 0.1 0.069 13.1 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|88602051|ref|YP_502229.1| - 0.044 13.9 0.4 0.16 12.1 0.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 gi|88602051|ref|YP_502229.1| - 0.093 12.1 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MeaB PF03308.16 gi|88602051|ref|YP_502229.1| - 0.1 11.5 0.1 0.23 10.4 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|88602051|ref|YP_502229.1| - 0.15 12.5 0.4 0.81 10.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|88602051|ref|YP_502229.1| - 0.2 12.0 0.8 0.51 10.6 0.8 1.9 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|88602052|ref|YP_502230.1| - 1.1e-07 32.2 1.3 1.1e-07 32.2 1.3 2.9 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|88602052|ref|YP_502230.1| - 1.2e-05 25.8 0.2 1.2e-05 25.8 0.2 2.6 3 0 0 3 3 3 2 MacB-like periplasmic core domain NapD PF03927.13 gi|88602052|ref|YP_502230.1| - 0.012 15.7 0.0 6 7.0 0.0 2.8 2 0 0 2 2 2 0 NapD protein YcgR PF07317.12 gi|88602052|ref|YP_502230.1| - 0.14 12.1 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Flagellar regulator YcgR DUF4231 PF14015.6 gi|88602052|ref|YP_502230.1| - 0.15 12.6 2.7 0.39 11.2 2.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) CARDB PF07705.11 gi|88602053|ref|YP_502231.1| - 9.9e-07 29.0 3.2 0.0073 16.5 0.2 3.1 3 0 0 3 3 3 2 CARDB N_BRCA1_IG PF16158.5 gi|88602053|ref|YP_502231.1| - 0.00012 22.7 0.0 11 6.9 0.0 4.0 3 1 0 4 4 4 1 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 gi|88602053|ref|YP_502231.1| - 0.00048 20.3 1.8 0.22 11.8 0.1 3.7 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|88602053|ref|YP_502231.1| - 0.0016 18.7 4.4 0.54 10.6 0.2 3.5 3 0 0 3 3 3 1 Domain of unknown function DUF11 OppC_N PF12911.7 gi|88602053|ref|YP_502231.1| - 0.015 15.3 0.7 0.93 9.5 0.0 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C FixG_C PF11614.8 gi|88602053|ref|YP_502231.1| - 0.091 13.0 0.9 30 4.9 0.0 3.4 3 1 2 5 5 5 0 IG-like fold at C-terminal of FixG, putative oxidoreductase Toast_rack_N PF17115.5 gi|88602054|ref|YP_502232.1| - 2.5e-30 104.6 0.1 2.3e-29 101.5 0.0 2.5 3 1 0 3 3 3 1 N-terminal domain of toast_rack, DUF2154 DUF2154 PF09922.9 gi|88602054|ref|YP_502232.1| - 1.8e-05 24.6 0.1 0.0002 21.2 0.0 2.2 2 0 0 2 2 2 1 Cell wall-active antibiotics response 4TMS YvqF DUF4097 PF13349.6 gi|88602054|ref|YP_502232.1| - 9.1e-05 21.9 0.0 0.00086 18.7 0.0 2.2 1 1 0 1 1 1 1 Putative adhesin Pab87_oct PF13969.6 gi|88602054|ref|YP_502232.1| - 0.085 12.9 0.0 19 5.4 0.0 2.3 2 0 0 2 2 2 0 Pab87 octamerisation domain DUF1700 PF08006.11 gi|88602055|ref|YP_502233.1| - 1.5e-68 229.9 0.6 1.7e-68 229.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1700) PadR PF03551.14 gi|88602056|ref|YP_502234.1| - 7.7e-20 70.6 0.8 1e-19 70.3 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|88602056|ref|YP_502234.1| - 0.00022 21.0 0.1 0.00029 20.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|88602056|ref|YP_502234.1| - 0.0018 18.4 0.0 0.0022 18.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|88602056|ref|YP_502234.1| - 0.0052 17.3 0.0 0.021 15.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|88602056|ref|YP_502234.1| - 0.0068 16.2 0.1 0.016 15.0 0.1 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|88602056|ref|YP_502234.1| - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|88602056|ref|YP_502234.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|88602056|ref|YP_502234.1| - 0.046 13.9 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|88602056|ref|YP_502234.1| - 0.062 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|88602056|ref|YP_502234.1| - 0.081 13.3 0.0 0.09 13.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_28 PF13518.6 gi|88602056|ref|YP_502234.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|88602056|ref|YP_502234.1| - 0.14 12.5 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4013 PF13197.6 gi|88602057|ref|YP_502235.1| - 9e-29 100.5 27.0 9e-29 100.5 27.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) DUF3671 PF12420.8 gi|88602057|ref|YP_502235.1| - 0.027 14.5 1.1 0.027 14.5 1.1 3.2 2 1 0 2 2 2 0 Protein of unknown function PKD_channel PF08016.12 gi|88602057|ref|YP_502235.1| - 1.6 7.3 8.5 2.3 6.8 8.5 1.2 1 0 0 1 1 1 0 Polycystin cation channel DUF373 PF04123.13 gi|88602057|ref|YP_502235.1| - 4.9 6.5 15.3 7.5 5.9 15.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2975 PF11188.8 gi|88602057|ref|YP_502235.1| - 5.2 7.0 21.9 0.28 11.1 13.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) Bac_export_2 PF01312.19 gi|88602057|ref|YP_502235.1| - 7.9 5.6 9.6 12 5.0 9.6 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family Polbeta PF18765.1 gi|88602059|ref|YP_502237.1| - 1.3e-11 44.4 0.0 1.6e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88602059|ref|YP_502237.1| - 5.8e-08 32.9 0.0 6.5e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|88602059|ref|YP_502237.1| - 0.00039 20.4 0.0 0.0012 18.8 0.0 1.6 1 1 1 2 2 2 1 Adenylate cyclase NT domain DUF86 PF01934.17 gi|88602060|ref|YP_502238.1| - 3.9e-15 55.8 0.2 4.3e-15 55.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 MMPL PF03176.15 gi|88602061|ref|YP_502239.1| - 4.8e-47 160.5 20.5 1.1e-26 93.6 4.5 2.2 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 gi|88602061|ref|YP_502239.1| - 2.6e-10 40.0 33.2 9.5e-10 38.2 11.9 2.6 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 gi|88602061|ref|YP_502239.1| - 2.6e-07 29.1 28.7 0.00018 19.8 7.3 2.2 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|88602061|ref|YP_502239.1| - 1.1e-06 28.5 20.1 8.4e-05 22.5 7.5 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|88602061|ref|YP_502239.1| - 1.6e-05 22.8 39.5 0.0059 14.3 16.3 2.8 2 1 1 3 3 3 3 AcrB/AcrD/AcrF family CPP1-like PF11833.8 gi|88602061|ref|YP_502239.1| - 0.022 14.4 0.2 0.52 9.9 0.0 2.6 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like NPCBM_assoc PF10633.9 gi|88602062|ref|YP_502240.1| - 3.8e-08 33.5 0.4 0.11 12.8 0.0 4.1 4 1 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|88602062|ref|YP_502240.1| - 1.1e-07 32.1 0.4 0.26 11.6 0.0 4.0 3 1 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|88602062|ref|YP_502240.1| - 4e-05 23.8 0.0 0.31 11.4 0.0 4.2 3 1 0 3 3 3 1 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|88602062|ref|YP_502240.1| - 0.12 11.5 0.0 8.5 5.3 0.0 2.1 2 0 0 2 2 2 0 PTHB1 C-terminus Insulin_TMD PF17870.1 gi|88602062|ref|YP_502240.1| - 5 7.3 5.7 0.74 9.9 0.4 2.1 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment PAS PF00989.25 gi|88602063|ref|YP_502241.1| - 1e-19 70.6 0.0 1.3e-09 38.1 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88602063|ref|YP_502241.1| - 1.5e-18 67.0 0.8 4e-07 30.2 0.0 3.2 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|88602063|ref|YP_502241.1| - 4.8e-13 48.8 0.0 2.9e-06 27.1 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|88602063|ref|YP_502241.1| - 3.1e-12 46.7 0.0 1.7e-05 25.0 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|88602063|ref|YP_502241.1| - 1.7e-09 37.8 0.0 7.6e-07 29.3 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_12 PF18095.1 gi|88602063|ref|YP_502241.1| - 6.3e-07 29.1 0.0 1.5e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 UPF0242 C-terminal PAS-like domain MarR_2 PF12802.7 gi|88602063|ref|YP_502241.1| - 0.00038 20.3 0.0 0.00096 19.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|88602063|ref|YP_502241.1| - 0.00077 19.2 0.1 0.0016 18.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|88602063|ref|YP_502241.1| - 0.023 14.5 0.0 0.056 13.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|88602063|ref|YP_502241.1| - 0.028 14.3 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 gi|88602063|ref|YP_502241.1| - 0.05 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.10 gi|88602063|ref|YP_502241.1| - 0.13 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 KorB domain HTH_5 PF01022.20 gi|88602063|ref|YP_502241.1| - 0.15 11.9 1.4 0.36 10.7 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Ammonium_transp PF00909.21 gi|88602064|ref|YP_502242.1| - 2.8e-124 414.9 38.6 3.1e-124 414.7 38.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PEGA PF08308.11 gi|88602065|ref|YP_502243.1| - 4.7e-26 90.5 2.7 3.5e-06 26.8 0.0 4.3 4 0 0 4 4 4 4 PEGA domain CarboxypepD_reg PF13620.6 gi|88602065|ref|YP_502243.1| - 4.2e-07 30.1 0.0 0.035 14.4 0.1 3.6 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88602065|ref|YP_502243.1| - 2.7e-06 27.3 0.1 0.26 11.3 0.0 3.6 3 0 0 3 3 3 2 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|88602065|ref|YP_502243.1| - 0.001 18.8 0.3 0.018 14.8 0.1 2.7 3 0 0 3 3 3 1 Polysaccharide lyase family 4, domain II Desulfoferrodox PF01880.18 gi|88602066|ref|YP_502244.1| - 2.2e-17 63.4 0.7 5.1e-17 62.3 0.2 1.8 1 1 1 2 2 2 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|88602066|ref|YP_502244.1| - 4.4e-14 51.8 6.8 7e-14 51.2 6.8 1.3 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain TPR_2 PF07719.17 gi|88602067|ref|YP_502245.1| - 1.2e-49 162.4 16.4 1.9e-06 27.6 0.0 12.6 13 0 0 13 13 13 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602067|ref|YP_502245.1| - 4.2e-48 159.3 14.7 2.6e-07 30.2 0.0 11.2 12 0 0 12 12 11 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602067|ref|YP_502245.1| - 1.7e-32 111.8 3.0 1.4e-05 25.5 0.0 8.2 4 2 3 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602067|ref|YP_502245.1| - 5.4e-32 110.2 2.3 1.4e-06 28.8 0.0 8.2 4 4 5 9 9 9 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602067|ref|YP_502245.1| - 9.5e-32 106.5 7.0 0.0011 19.0 0.0 10.3 11 0 0 11 11 9 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602067|ref|YP_502245.1| - 1e-26 92.8 4.2 5.7e-06 26.4 0.1 6.9 4 2 4 8 8 8 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602067|ref|YP_502245.1| - 1.3e-24 84.8 11.5 0.0018 19.0 0.0 10.5 3 3 9 12 12 11 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602067|ref|YP_502245.1| - 2.2e-24 84.0 10.9 0.00049 20.3 0.0 9.2 10 0 0 10 10 9 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602067|ref|YP_502245.1| - 1.2e-22 79.0 10.0 0.04 14.6 0.0 10.6 12 0 0 12 12 10 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602067|ref|YP_502245.1| - 1.9e-22 79.3 16.6 3.8e-06 27.0 2.1 6.4 2 2 6 8 8 8 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|88602067|ref|YP_502245.1| - 3.9e-22 76.6 7.3 0.005 16.8 0.0 9.9 9 1 1 10 10 10 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602067|ref|YP_502245.1| - 5.8e-19 67.5 5.1 0.00048 19.8 0.2 8.4 8 2 2 10 10 10 4 TPR repeat TPR_12 PF13424.6 gi|88602067|ref|YP_502245.1| - 9.3e-19 67.5 18.3 2e-05 24.8 0.2 9.1 4 4 4 8 8 8 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602067|ref|YP_502245.1| - 6.4e-16 58.2 17.4 0.00087 19.3 0.1 10.2 7 2 3 10 10 10 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|88602067|ref|YP_502245.1| - 1.1e-10 41.1 7.4 0.045 13.6 0.0 7.9 7 0 0 7 7 7 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602067|ref|YP_502245.1| - 1.2e-09 37.6 7.2 8.7e-06 24.9 0.1 5.0 2 2 3 5 5 5 1 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|88602067|ref|YP_502245.1| - 1.6e-07 31.3 14.6 0.11 12.6 1.0 5.5 2 1 3 5 5 5 3 Putative TPR-like repeat ChAPs PF09295.10 gi|88602067|ref|YP_502245.1| - 3e-06 26.5 0.4 0.0073 15.4 0.0 2.7 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_15 PF13429.6 gi|88602067|ref|YP_502245.1| - 0.00067 18.9 5.7 0.38 9.9 0.6 5.0 2 2 3 5 5 5 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88602067|ref|YP_502245.1| - 0.00093 19.3 5.0 14 5.7 0.2 6.0 4 3 3 7 7 7 0 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|88602067|ref|YP_502245.1| - 0.0018 18.7 7.0 1.7 9.1 0.2 4.8 2 1 4 6 6 5 1 Bacterial transcriptional activator domain SHNi-TPR PF10516.9 gi|88602067|ref|YP_502245.1| - 0.0025 17.3 1.1 28 4.3 0.0 4.9 4 0 0 4 4 4 0 SHNi-TPR DUF4919 PF16266.5 gi|88602067|ref|YP_502245.1| - 0.0034 17.4 3.2 2.7 7.9 0.1 3.6 3 1 2 5 5 5 2 Domain of unknown function (DUF4919) TPR_20 PF14561.6 gi|88602067|ref|YP_502245.1| - 0.0036 17.6 2.6 0.37 11.2 0.1 4.3 3 1 2 5 5 5 1 Tetratricopeptide repeat Paf67 PF10255.9 gi|88602067|ref|YP_502245.1| - 0.0045 16.0 1.9 3 6.8 0.0 3.5 3 1 0 3 3 3 1 RNA polymerase I-associated factor PAF67 TOM20_plant PF06552.12 gi|88602067|ref|YP_502245.1| - 0.011 15.5 1.9 1.9 8.2 0.1 4.3 4 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 PknG_TPR PF16918.5 gi|88602067|ref|YP_502245.1| - 0.012 14.3 0.2 0.98 8.1 0.0 2.6 2 1 1 3 3 3 0 Protein kinase G tetratricopeptide repeat YfdX PF10938.8 gi|88602067|ref|YP_502245.1| - 0.052 13.5 0.1 0.21 11.5 0.1 2.0 1 0 0 1 1 1 0 YfdX protein Alkyl_sulf_dimr PF14863.6 gi|88602067|ref|YP_502245.1| - 0.053 14.0 0.1 6.4 7.2 0.0 3.6 2 2 0 2 2 2 0 Alkyl sulfatase dimerisation FAT PF02259.23 gi|88602067|ref|YP_502245.1| - 0.097 11.9 6.3 0.17 11.0 0.4 3.7 2 2 2 4 4 4 0 FAT domain ANAPC5 PF12862.7 gi|88602067|ref|YP_502245.1| - 0.3 11.2 8.7 0.44 10.6 0.5 4.3 4 2 1 5 5 4 0 Anaphase-promoting complex subunit 5 DUF1211 PF06736.11 gi|88602068|ref|YP_502246.1| - 2e-10 40.9 8.6 4.4e-10 39.9 8.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1211) DUF1211 PF06736.11 gi|88602069|ref|YP_502247.1| - 1.3e-12 48.0 5.3 1.3e-12 48.0 5.3 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) Cation_efflux PF01545.21 gi|88602069|ref|YP_502247.1| - 0.06 13.1 9.1 0.086 12.6 8.7 1.6 1 1 0 1 1 1 0 Cation efflux family DUF2157 PF09925.9 gi|88602069|ref|YP_502247.1| - 0.67 9.7 4.5 3.4 7.4 3.9 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) TrmB PF01978.19 gi|88602070|ref|YP_502248.1| - 0.0019 18.0 0.0 0.0039 17.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88602070|ref|YP_502248.1| - 0.0078 16.1 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.6 gi|88602070|ref|YP_502248.1| - 0.034 14.1 0.4 0.055 13.4 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF327 PF03885.13 gi|88602070|ref|YP_502248.1| - 0.049 13.6 1.7 0.093 12.7 1.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF327) CDC73_C PF05179.14 gi|88602070|ref|YP_502248.1| - 0.075 12.7 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA pol II accessory factor, Cdc73 family, C-terminal LHH PF14411.6 gi|88602070|ref|YP_502248.1| - 0.18 12.0 0.2 0.27 11.4 0.2 1.2 1 0 0 1 1 1 0 A nuclease of the HNH/ENDO VII superfamily with conserved LHH Glycos_transf_2 PF00535.26 gi|88602071|ref|YP_502249.1| - 8.5e-18 64.7 0.0 1.2e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88602071|ref|YP_502249.1| - 2.3e-06 27.7 0.0 3.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|88602071|ref|YP_502249.1| - 0.01 16.4 0.0 0.026 15.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Bmp PF02608.14 gi|88602071|ref|YP_502249.1| - 0.056 12.4 0.4 0.086 11.8 0.4 1.2 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like CAAD PF14159.6 gi|88602071|ref|YP_502249.1| - 0.1 12.4 1.3 0.2 11.5 1.3 1.4 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Gln-synt_C PF00120.24 gi|88602072|ref|YP_502250.1| - 7.7e-132 439.5 0.0 9e-132 439.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|88602072|ref|YP_502250.1| - 1.1e-31 108.4 0.0 2.5e-31 107.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GATase_2 PF00310.21 gi|88602073|ref|YP_502251.1| - 3.4e-12 45.8 0.4 6.3e-10 38.3 0.4 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|88602073|ref|YP_502251.1| - 8.4e-11 42.2 0.0 3.1e-09 37.1 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|88602073|ref|YP_502251.1| - 1.6e-07 31.3 0.0 0.013 15.4 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|88602074|ref|YP_502252.1| - 2.2e-140 468.0 0.2 2.2e-140 468.0 0.2 1.4 2 0 0 2 2 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|88602074|ref|YP_502252.1| - 2.5e-18 66.6 0.1 6e-10 39.1 0.1 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|88602074|ref|YP_502252.1| - 4.6e-11 42.4 8.3 7.1e-09 35.1 5.2 3.1 3 0 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|88602074|ref|YP_502252.1| - 1.6e-10 41.0 4.0 4.5e-10 39.4 4.0 1.7 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|88602074|ref|YP_502252.1| - 8.3e-09 34.9 6.5 1.7e-07 30.6 5.0 2.8 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4 PF00037.27 gi|88602074|ref|YP_502252.1| - 9.4e-07 28.4 22.1 0.00018 21.2 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88602074|ref|YP_502252.1| - 1.2e-06 28.5 11.8 1.2e-06 28.5 11.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88602074|ref|YP_502252.1| - 2.4e-06 28.0 18.8 2.7e-06 27.9 11.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602074|ref|YP_502252.1| - 1.1e-05 25.4 16.2 2.1e-05 24.5 11.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602074|ref|YP_502252.1| - 2e-05 24.6 11.7 2e-05 24.6 11.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602074|ref|YP_502252.1| - 9.7e-05 22.3 2.0 9.7e-05 22.3 2.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602074|ref|YP_502252.1| - 0.00011 23.1 16.0 0.0055 17.6 4.3 3.3 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain DHO_dh PF01180.21 gi|88602074|ref|YP_502252.1| - 0.0003 20.1 4.4 0.0021 17.3 4.4 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_17 PF13534.6 gi|88602074|ref|YP_502252.1| - 0.00075 20.0 11.4 0.38 11.3 0.9 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|88602074|ref|YP_502252.1| - 0.0021 17.5 0.3 0.0047 16.4 0.3 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_2 PF12797.7 gi|88602074|ref|YP_502252.1| - 0.0076 16.3 23.8 0.031 14.4 2.3 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain ThiG PF05690.14 gi|88602074|ref|YP_502252.1| - 0.057 12.7 0.6 0.11 11.7 0.6 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|88602074|ref|YP_502252.1| - 0.28 10.6 1.0 0.52 9.7 0.2 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator FYVE PF01363.21 gi|88602074|ref|YP_502252.1| - 0.45 10.7 12.5 1.4 9.1 7.6 2.5 3 0 0 3 3 2 0 FYVE zinc finger Fer4_8 PF13183.6 gi|88602074|ref|YP_502252.1| - 0.93 10.0 20.9 12 6.4 5.9 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88602074|ref|YP_502252.1| - 2.3 9.1 18.7 0.79 10.6 1.1 3.1 3 0 0 3 3 2 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|88602075|ref|YP_502253.1| - 2.4e-36 125.1 6.2 3e-36 124.8 6.2 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|88602076|ref|YP_502254.1| - 8e-35 120.0 0.0 1.3e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88602076|ref|YP_502254.1| - 3.8e-21 75.0 0.1 7.4e-21 74.1 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|88602076|ref|YP_502254.1| - 9.1e-07 28.9 13.4 1.7e-06 28.0 9.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602076|ref|YP_502254.1| - 9.2e-07 28.4 4.7 9.2e-07 28.4 4.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88602076|ref|YP_502254.1| - 4.2e-06 26.8 10.1 7.5e-06 26.0 8.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602076|ref|YP_502254.1| - 7.1e-06 25.9 3.5 7.1e-06 25.9 3.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88602076|ref|YP_502254.1| - 1.7e-05 25.0 12.3 0.0021 18.5 1.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88602076|ref|YP_502254.1| - 1.7e-05 25.3 10.2 1.7e-05 25.3 10.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602076|ref|YP_502254.1| - 0.00044 20.2 3.5 0.00044 20.2 3.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602076|ref|YP_502254.1| - 0.0017 19.3 14.8 0.33 11.9 12.0 3.2 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|88602076|ref|YP_502254.1| - 0.0023 18.3 6.9 0.077 13.5 1.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602076|ref|YP_502254.1| - 0.006 17.4 18.8 0.097 13.7 7.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602076|ref|YP_502254.1| - 0.0086 16.6 8.1 0.032 14.8 0.4 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602076|ref|YP_502254.1| - 0.019 15.1 0.7 0.019 15.1 0.7 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602076|ref|YP_502254.1| - 0.035 14.3 6.2 0.5 10.6 0.4 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88602076|ref|YP_502254.1| - 0.68 10.7 5.1 1.3 9.8 0.8 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|88602076|ref|YP_502254.1| - 1.4 9.5 11.5 1.8 9.2 2.3 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88602076|ref|YP_502254.1| - 4.9 8.1 11.4 0.22 12.4 0.7 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|88602077|ref|YP_502255.1| - 3.4e-07 30.8 0.0 1.1e-06 29.1 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88602077|ref|YP_502255.1| - 4.4e-06 26.8 0.1 1e-05 25.6 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88602077|ref|YP_502255.1| - 0.0001 22.6 0.0 0.00019 21.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prenyltransf PF01255.19 gi|88602078|ref|YP_502256.1| - 2e-68 230.3 0.0 2.3e-68 230.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|88602079|ref|YP_502257.1| - 2.1e-20 73.2 0.0 2.4e-20 73.0 0.0 1.2 1 1 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TP_methylase PF00590.20 gi|88602081|ref|YP_502259.1| - 5.1e-21 75.6 0.0 6.1e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.13 gi|88602082|ref|YP_502260.1| - 2.9e-43 145.8 0.1 4.4e-21 74.7 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) PRA-PH PF01503.17 gi|88602083|ref|YP_502261.1| - 2.9e-15 56.4 0.0 3.2e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|88602083|ref|YP_502261.1| - 2.5e-06 27.6 0.0 3.8e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain KH_2 PF07650.17 gi|88602084|ref|YP_502262.1| - 1.8e-19 69.3 1.9 1.2e-11 44.2 0.4 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|88602084|ref|YP_502262.1| - 3.7e-11 43.0 0.9 1.3e-09 38.0 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|88602084|ref|YP_502262.1| - 1.1e-09 38.0 0.5 3.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|88602084|ref|YP_502262.1| - 5.1e-07 29.4 1.1 0.00054 19.7 0.1 2.3 2 0 0 2 2 2 2 KH domain baeRF_family11 PF18855.1 gi|88602084|ref|YP_502262.1| - 0.17 12.2 0.0 0.24 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 11 Fer4_NifH PF00142.18 gi|88602086|ref|YP_502264.1| - 3.1e-111 371.1 0.1 3.8e-111 370.9 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|88602086|ref|YP_502264.1| - 1e-11 45.0 0.0 1.7e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|88602086|ref|YP_502264.1| - 8.2e-08 32.4 0.3 1.9e-07 31.2 0.1 1.7 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|88602086|ref|YP_502264.1| - 5.8e-06 25.9 0.4 7.6e-05 22.3 0.2 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|88602086|ref|YP_502264.1| - 2.3e-05 23.7 0.2 9.4e-05 21.7 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|88602086|ref|YP_502264.1| - 0.00035 20.0 0.1 0.0014 17.9 0.1 1.9 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|88602086|ref|YP_502264.1| - 0.0032 17.1 0.1 0.0077 15.9 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|88602086|ref|YP_502264.1| - 0.015 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|88602086|ref|YP_502264.1| - 0.018 14.0 0.1 0.027 13.5 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|88602086|ref|YP_502264.1| - 0.055 12.9 0.1 0.17 11.3 0.1 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 gi|88602086|ref|YP_502264.1| - 0.07 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|88602086|ref|YP_502264.1| - 0.16 11.6 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|88602086|ref|YP_502264.1| - 0.17 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|88602086|ref|YP_502264.1| - 0.17 11.0 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|88602086|ref|YP_502264.1| - 0.17 12.3 0.0 0.42 11.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|88602087|ref|YP_502265.1| - 4.1e-45 154.0 0.0 6.7e-45 153.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|88602087|ref|YP_502265.1| - 0.00072 20.1 0.1 0.0016 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|88602087|ref|YP_502265.1| - 0.0074 15.4 0.1 0.026 13.6 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|88602087|ref|YP_502265.1| - 0.0084 16.6 0.0 0.018 15.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|88602087|ref|YP_502265.1| - 0.014 15.8 0.0 0.088 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain TsaE PF02367.17 gi|88602087|ref|YP_502265.1| - 0.017 15.2 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|88602087|ref|YP_502265.1| - 0.035 13.8 0.1 0.074 12.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|88602087|ref|YP_502265.1| - 0.047 13.5 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CoaE PF01121.20 gi|88602087|ref|YP_502265.1| - 0.15 11.8 0.6 2 8.1 0.1 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_23 PF13476.6 gi|88602087|ref|YP_502265.1| - 0.15 12.5 1.0 0.26 11.8 0.5 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|88602087|ref|YP_502265.1| - 0.15 11.4 0.0 0.38 10.1 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Lactamase_B PF00753.27 gi|88602088|ref|YP_502266.1| - 1.6e-11 44.6 0.0 3.2e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88602088|ref|YP_502266.1| - 0.0002 21.0 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|88602088|ref|YP_502266.1| - 0.00092 19.1 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|88602088|ref|YP_502266.1| - 0.0084 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin DUF2114 PF09887.9 gi|88602090|ref|YP_502268.1| - 5.9e-225 746.9 1.8 6.6e-225 746.7 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF3638 PF12340.8 gi|88602091|ref|YP_502269.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) GATase PF00117.28 gi|88602093|ref|YP_502271.1| - 2.8e-16 59.8 0.0 4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88602093|ref|YP_502271.1| - 1.3e-06 28.4 0.0 3.2e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|88602093|ref|YP_502271.1| - 0.026 14.4 0.0 2 8.2 0.0 2.2 2 0 0 2 2 2 0 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|88602093|ref|YP_502271.1| - 0.084 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Sulf_transp PF04143.14 gi|88602094|ref|YP_502272.1| - 9e-27 94.4 13.9 1e-26 94.3 13.9 1.0 1 0 0 1 1 1 1 Sulphur transport Phage_holin_2_3 PF16080.5 gi|88602094|ref|YP_502272.1| - 9.1 6.1 11.4 3.6 7.4 0.9 3.3 3 0 0 3 3 3 0 Bacteriophage holin family HP1 Sulf_transp PF04143.14 gi|88602095|ref|YP_502273.1| - 1.2e-11 44.7 12.4 1.6e-11 44.3 12.4 1.2 1 0 0 1 1 1 1 Sulphur transport TFIIS_C PF01096.18 gi|88602097|ref|YP_502275.1| - 7.6e-17 60.9 2.4 7.6e-17 60.9 2.4 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|88602097|ref|YP_502275.1| - 0.0039 17.0 1.0 0.0039 17.0 1.0 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Ogr_Delta PF04606.12 gi|88602097|ref|YP_502275.1| - 0.0052 16.7 0.7 0.0052 16.7 0.7 2.0 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-DNA_Pol PF08996.10 gi|88602097|ref|YP_502275.1| - 0.0068 16.2 0.2 0.0068 16.2 0.2 1.7 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger DUF1936 PF09151.10 gi|88602097|ref|YP_502275.1| - 0.022 14.7 0.2 0.022 14.7 0.2 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF1936) TF_Zn_Ribbon PF08271.12 gi|88602097|ref|YP_502275.1| - 0.022 14.3 12.0 0.8 9.3 3.8 3.4 2 2 0 2 2 2 0 TFIIB zinc-binding Cys_rich_CPCC PF14206.6 gi|88602097|ref|YP_502275.1| - 0.03 14.1 0.2 0.03 14.1 0.2 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC zinc_ribbon_2 PF13240.6 gi|88602097|ref|YP_502275.1| - 0.032 14.0 16.5 0.36 10.6 0.2 3.7 3 1 1 4 4 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|88602097|ref|YP_502275.1| - 0.036 14.1 0.6 0.036 14.1 0.6 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|88602097|ref|YP_502275.1| - 0.068 13.2 9.7 0.029 14.4 5.0 2.4 2 1 0 2 2 1 0 Double zinc ribbon CpXC PF14353.6 gi|88602097|ref|YP_502275.1| - 0.07 13.2 5.0 0.4 10.7 0.4 2.7 1 1 2 3 3 3 0 CpXC protein YhfH PF14149.6 gi|88602097|ref|YP_502275.1| - 0.13 12.3 8.0 2.9 7.9 1.2 3.8 3 1 1 4 4 4 0 YhfH-like protein zf-RING_7 PF02591.15 gi|88602097|ref|YP_502275.1| - 0.13 12.5 5.0 4.3 7.6 0.0 3.9 4 0 0 4 4 4 0 C4-type zinc ribbon domain DUF2072 PF09845.9 gi|88602097|ref|YP_502275.1| - 0.15 12.3 7.7 3.6 7.8 3.7 2.4 1 1 1 2 2 2 0 Zn-ribbon containing protein CxC5 PF18718.1 gi|88602097|ref|YP_502275.1| - 0.29 11.2 2.2 0.3 11.2 0.1 1.9 1 1 0 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Nudix_N_2 PF14803.6 gi|88602097|ref|YP_502275.1| - 0.43 10.5 10.5 5.8 6.9 0.1 3.7 3 1 0 3 3 3 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.12 gi|88602097|ref|YP_502275.1| - 0.67 10.3 12.6 3.2 8.1 0.0 3.5 2 1 1 3 3 3 0 Zinc-binding domain of primase-helicase DNA_ligase_ZBD PF03119.16 gi|88602097|ref|YP_502275.1| - 0.71 10.0 4.7 5.2 7.2 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|88602097|ref|YP_502275.1| - 1.1 8.7 16.2 0.39 10.2 0.9 3.3 3 1 0 3 3 2 0 zinc-ribbon domain DUF1272 PF06906.11 gi|88602097|ref|YP_502275.1| - 1.2 9.3 8.7 2.6 8.2 1.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) zinc_ribbon_4 PF13717.6 gi|88602097|ref|YP_502275.1| - 1.3 9.0 0.1 1.3 9.0 0.1 4.2 3 1 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|88602097|ref|YP_502275.1| - 2.8 8.0 8.9 1 9.4 2.2 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 gi|88602097|ref|YP_502275.1| - 4 7.6 13.4 6 7.0 0.7 3.7 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS91 PF14319.6 gi|88602097|ref|YP_502275.1| - 4.5 7.4 12.3 2.4 8.2 2.0 3.0 1 1 0 2 2 2 0 Transposase zinc-binding domain Prok-RING_1 PF14446.6 gi|88602097|ref|YP_502275.1| - 4.7 7.2 10.4 0.8 9.7 0.9 2.8 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 Exosortase_EpsH PF09721.10 gi|88602098|ref|YP_502276.1| - 7.4e-11 42.1 23.1 1.1e-10 41.5 23.1 1.3 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) CDP-OH_P_transf PF01066.21 gi|88602099|ref|YP_502277.1| - 9.4e-13 48.7 1.9 9.4e-13 48.7 1.9 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase RibD_C PF01872.17 gi|88602100|ref|YP_502278.1| - 1.5e-41 142.4 0.0 1.7e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain TruD PF01142.18 gi|88602101|ref|YP_502279.1| - 3.1e-129 431.4 0.0 3.5e-129 431.3 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|88602102|ref|YP_502280.1| - 4.4e-36 123.7 0.2 5e-36 123.5 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Phage_portal PF04860.12 gi|88602102|ref|YP_502280.1| - 0.007 15.6 0.0 0.0081 15.4 0.0 1.0 1 0 0 1 1 1 1 Phage portal protein RT_RNaseH_2 PF17919.1 gi|88602102|ref|YP_502280.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 RNase H-like domain found in reverse transcriptase FAD_binding_3 PF01494.19 gi|88602103|ref|YP_502281.1| - 4.7e-14 52.4 1.5 5.6e-07 29.1 0.1 3.1 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|88602103|ref|YP_502281.1| - 1.5e-08 34.6 0.1 0.0009 18.9 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|88602103|ref|YP_502281.1| - 9.3e-07 28.5 0.9 1.5e-06 27.8 0.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|88602103|ref|YP_502281.1| - 1.2e-05 24.7 0.0 1.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|88602103|ref|YP_502281.1| - 2.1e-05 24.7 0.4 7.2e-05 22.9 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|88602103|ref|YP_502281.1| - 2.4e-05 23.4 0.0 0.11 11.3 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|88602103|ref|YP_502281.1| - 2.6e-05 23.5 0.4 0.07 12.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|88602103|ref|YP_502281.1| - 0.00012 21.5 0.9 0.0003 20.1 0.3 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|88602103|ref|YP_502281.1| - 0.0002 20.2 0.1 0.00031 19.6 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|88602103|ref|YP_502281.1| - 0.00039 19.6 1.2 0.00083 18.5 1.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|88602103|ref|YP_502281.1| - 0.0094 15.1 0.3 0.0094 15.1 0.3 1.7 2 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|88602103|ref|YP_502281.1| - 0.028 13.7 0.2 0.045 13.0 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|88602103|ref|YP_502281.1| - 0.033 14.1 0.5 0.067 13.1 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|88602103|ref|YP_502281.1| - 0.043 14.4 0.0 0.1 13.2 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|88602103|ref|YP_502281.1| - 0.12 12.9 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain TPR_2 PF07719.17 gi|88602105|ref|YP_502283.1| - 3.6e-47 154.7 6.1 4.8e-07 29.4 0.0 11.3 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602105|ref|YP_502283.1| - 1.3e-43 145.0 19.2 2.4e-08 33.4 0.1 10.7 12 0 0 12 12 11 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602105|ref|YP_502283.1| - 2.7e-31 105.1 15.6 1.8e-06 27.7 0.1 9.2 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602105|ref|YP_502283.1| - 1.3e-26 93.0 0.0 1.4e-06 28.8 0.0 6.9 4 2 3 7 7 7 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602105|ref|YP_502283.1| - 2.4e-25 87.9 25.5 2e-07 30.6 0.0 8.8 5 3 4 9 9 9 5 TPR repeat TPR_17 PF13431.6 gi|88602105|ref|YP_502283.1| - 2.1e-23 81.0 11.5 0.0037 17.5 0.1 9.2 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602105|ref|YP_502283.1| - 3.4e-21 75.5 7.1 1.9e-06 28.3 0.0 6.8 5 2 2 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602105|ref|YP_502283.1| - 2.6e-20 71.4 0.2 0.35 11.8 0.0 9.3 4 3 6 10 10 10 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602105|ref|YP_502283.1| - 4e-18 65.4 3.9 0.00035 20.7 0.0 5.3 3 1 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|88602105|ref|YP_502283.1| - 1.8e-17 63.4 4.5 0.0023 18.2 0.0 7.2 4 3 3 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602105|ref|YP_502283.1| - 1e-15 57.6 0.0 0.053 13.7 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602105|ref|YP_502283.1| - 2.3e-12 46.7 11.0 0.085 13.5 0.0 9.4 10 1 1 11 11 9 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602105|ref|YP_502283.1| - 3.2e-12 45.6 2.3 0.094 12.8 0.0 8.8 10 0 0 10 10 10 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602105|ref|YP_502283.1| - 3.5e-12 46.0 0.0 1.4e-05 24.2 0.0 3.9 3 1 2 5 5 5 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|88602105|ref|YP_502283.1| - 1e-07 31.9 8.7 0.17 12.0 0.0 5.6 5 1 1 6 6 5 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|88602105|ref|YP_502283.1| - 4.2e-06 26.4 7.9 0.056 13.3 0.0 6.7 9 0 0 9 9 7 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602105|ref|YP_502283.1| - 0.00054 19.3 0.0 2.7 7.1 0.0 4.1 2 2 2 4 4 4 1 Tetratricopeptide repeat DUF5112 PF17139.4 gi|88602105|ref|YP_502283.1| - 0.0022 17.5 0.4 0.0054 16.2 0.4 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5112) TPR_21 PF09976.9 gi|88602105|ref|YP_502283.1| - 0.003 17.3 1.6 7.7 6.2 0.0 3.8 3 1 0 3 3 3 0 Tetratricopeptide repeat-like domain FAT PF02259.23 gi|88602105|ref|YP_502283.1| - 0.016 14.4 0.3 0.039 13.2 0.3 1.7 1 0 0 1 1 1 0 FAT domain DUF4919 PF16266.5 gi|88602105|ref|YP_502283.1| - 0.019 14.9 0.3 5.2 7.0 0.0 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4919) TPR_3 PF07720.12 gi|88602105|ref|YP_502283.1| - 0.046 13.7 21.8 7.2 6.7 0.2 7.1 8 0 0 8 8 7 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|88602105|ref|YP_502283.1| - 0.064 12.6 0.0 0.68 9.2 0.0 2.5 2 2 1 3 3 3 0 MalT-like TPR region SHNi-TPR PF10516.9 gi|88602105|ref|YP_502283.1| - 0.1 12.1 0.1 46 3.6 0.0 3.7 3 0 0 3 3 3 0 SHNi-TPR Coatomer_E PF04733.14 gi|88602105|ref|YP_502283.1| - 0.19 11.1 1.7 9 5.6 0.1 3.2 4 1 0 4 4 3 0 Coatomer epsilon subunit Radical_SAM PF04055.21 gi|88602106|ref|YP_502284.1| - 5.8e-24 85.3 0.1 7.6e-24 85.0 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88602106|ref|YP_502284.1| - 1.3e-05 25.3 0.0 3.3e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88602106|ref|YP_502284.1| - 0.0066 16.7 0.0 0.015 15.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Toxin_29 PF08116.11 gi|88602106|ref|YP_502284.1| - 0.015 15.3 1.1 0.031 14.3 1.1 1.5 1 0 0 1 1 1 0 PhTx neurotoxin family Polysacc_deac_1 PF01522.21 gi|88602106|ref|YP_502284.1| - 0.095 12.6 0.1 1.9 8.4 0.0 2.2 2 1 0 2 2 2 0 Polysaccharide deacetylase IF2_N PF04760.15 gi|88602106|ref|YP_502284.1| - 0.1 12.4 0.0 0.4 10.5 0.0 2.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region CdAMP_rec PF06153.11 gi|88602106|ref|YP_502284.1| - 0.14 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Cyclic-di-AMP receptor DUF1211 PF06736.11 gi|88602107|ref|YP_502285.1| - 2.7e-22 79.0 6.0 2.7e-22 79.0 6.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) TMEM251 PF15190.6 gi|88602107|ref|YP_502285.1| - 0.042 13.8 0.2 0.042 13.8 0.2 1.8 2 0 0 2 2 2 0 Transmembrane protein 251 CopD PF05425.13 gi|88602107|ref|YP_502285.1| - 0.41 11.1 3.3 1.1 9.7 2.4 2.0 1 1 1 2 2 2 0 Copper resistance protein D Thioredoxin PF00085.20 gi|88602108|ref|YP_502286.1| - 9.5e-17 60.9 0.0 1.1e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|88602108|ref|YP_502286.1| - 1.3e-08 35.2 0.2 1.3e-06 28.8 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|88602108|ref|YP_502286.1| - 0.00014 21.8 0.0 0.00023 21.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|88602108|ref|YP_502286.1| - 0.00048 20.0 0.0 0.00052 19.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|88602108|ref|YP_502286.1| - 0.0046 17.3 0.0 0.053 13.8 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|88602108|ref|YP_502286.1| - 0.0092 15.9 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family HyaE PF07449.11 gi|88602108|ref|YP_502286.1| - 0.025 14.6 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE RE_ApaLI PF09499.10 gi|88602108|ref|YP_502286.1| - 0.046 13.4 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease Thioredoxin_9 PF14595.6 gi|88602108|ref|YP_502286.1| - 0.063 13.0 0.0 0.085 12.6 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.6 gi|88602108|ref|YP_502286.1| - 0.098 12.8 0.0 0.29 11.4 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin-like AAA PF00004.29 gi|88602110|ref|YP_502288.1| - 1.4e-95 316.8 0.0 3.8e-47 160.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|88602110|ref|YP_502288.1| - 1.6e-22 79.5 1.5 4.3e-22 78.1 0.6 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|88602110|ref|YP_502288.1| - 1.8e-16 59.7 0.0 2.9e-08 33.4 0.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|88602110|ref|YP_502288.1| - 2.3e-14 53.9 0.0 8.5e-06 26.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|88602110|ref|YP_502288.1| - 1.8e-13 50.6 0.0 1e-06 28.6 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|88602110|ref|YP_502288.1| - 2.3e-13 50.9 1.1 4.1e-06 27.3 0.0 3.9 3 2 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|88602110|ref|YP_502288.1| - 7.6e-12 45.4 1.2 0.00011 22.2 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|88602110|ref|YP_502288.1| - 4.9e-11 42.4 0.0 0.00021 20.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|88602110|ref|YP_502288.1| - 6.5e-11 42.6 1.3 0.001 19.3 0.0 4.5 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|88602110|ref|YP_502288.1| - 9.2e-11 42.1 0.0 0.00012 22.2 0.0 2.9 2 1 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|88602110|ref|YP_502288.1| - 1.2e-10 41.0 0.3 3.2e-10 39.6 0.3 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.6 gi|88602110|ref|YP_502288.1| - 6.1e-09 36.0 0.0 0.0021 18.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|88602110|ref|YP_502288.1| - 5.7e-08 32.7 0.0 0.0069 16.1 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein ATPase PF06745.13 gi|88602110|ref|YP_502288.1| - 1.1e-07 31.5 1.5 0.5 9.7 0.0 4.3 4 0 0 4 4 4 2 KaiC AAA_28 PF13521.6 gi|88602110|ref|YP_502288.1| - 1.1e-07 32.2 0.0 0.0088 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|88602110|ref|YP_502288.1| - 2.1e-07 31.5 0.0 0.021 15.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|88602110|ref|YP_502288.1| - 4.9e-07 29.4 0.1 0.035 13.5 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|88602110|ref|YP_502288.1| - 1.2e-06 28.3 0.0 0.37 10.5 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|88602110|ref|YP_502288.1| - 1.3e-06 28.7 0.0 0.024 15.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|88602110|ref|YP_502288.1| - 2.3e-06 27.5 0.0 0.04 13.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|88602110|ref|YP_502288.1| - 4.4e-06 26.3 0.0 0.054 13.0 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region PhoH PF02562.16 gi|88602110|ref|YP_502288.1| - 8.3e-06 25.4 0.0 0.085 12.3 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.11 gi|88602110|ref|YP_502288.1| - 1.4e-05 24.9 0.1 0.25 11.2 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|88602110|ref|YP_502288.1| - 1.8e-05 25.3 0.0 0.15 12.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|88602110|ref|YP_502288.1| - 2.4e-05 24.3 0.7 0.63 9.9 0.0 4.1 3 1 1 4 4 4 1 NACHT domain TsaE PF02367.17 gi|88602110|ref|YP_502288.1| - 2.7e-05 24.2 0.0 0.5 10.4 0.0 2.9 3 0 0 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|88602110|ref|YP_502288.1| - 4.5e-05 22.8 0.0 0.24 10.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Bac_DnaA PF00308.18 gi|88602110|ref|YP_502288.1| - 4.7e-05 23.3 0.0 0.35 10.7 0.0 2.9 2 1 0 2 2 2 2 Bacterial dnaA protein AAA_11 PF13086.6 gi|88602110|ref|YP_502288.1| - 0.0003 20.7 0.0 0.98 9.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|88602110|ref|YP_502288.1| - 0.00032 19.9 0.0 0.5 9.4 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|88602110|ref|YP_502288.1| - 0.00039 20.0 4.7 0.43 10.1 0.4 3.4 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|88602110|ref|YP_502288.1| - 0.00045 20.6 0.0 0.57 10.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|88602110|ref|YP_502288.1| - 0.0007 18.8 0.0 0.7 9.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|88602110|ref|YP_502288.1| - 0.00073 19.3 0.2 1.5 8.5 0.1 2.6 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|88602110|ref|YP_502288.1| - 0.00089 19.6 0.3 1.7 9.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|88602110|ref|YP_502288.1| - 0.0011 18.2 0.0 0.91 8.7 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain ATPase_2 PF01637.18 gi|88602110|ref|YP_502288.1| - 0.0014 18.6 0.2 2.2 8.1 0.0 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|88602110|ref|YP_502288.1| - 0.002 17.4 0.1 1 8.6 0.0 2.5 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|88602110|ref|YP_502288.1| - 0.0024 17.8 1.1 9.4 6.1 0.0 3.8 2 2 1 4 4 3 0 NTPase Sigma54_activ_2 PF14532.6 gi|88602110|ref|YP_502288.1| - 0.0033 17.5 0.0 1.6 8.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Cytidylate_kin2 PF13189.6 gi|88602110|ref|YP_502288.1| - 0.0039 17.3 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family ResIII PF04851.15 gi|88602110|ref|YP_502288.1| - 0.0088 16.1 0.0 1.5 8.8 0.0 2.6 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 gi|88602110|ref|YP_502288.1| - 0.02 14.6 0.1 5 6.8 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase SKI PF01202.22 gi|88602110|ref|YP_502288.1| - 0.022 14.9 0.0 6.4 6.9 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|88602110|ref|YP_502288.1| - 0.029 14.1 0.0 5.8 6.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|88602110|ref|YP_502288.1| - 0.048 13.4 0.0 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Guanylate_kin PF00625.21 gi|88602110|ref|YP_502288.1| - 0.054 13.2 0.3 24 4.6 0.0 3.8 3 1 1 4 4 3 0 Guanylate kinase SRP54 PF00448.22 gi|88602110|ref|YP_502288.1| - 0.064 12.9 1.3 7.6 6.1 0.0 3.3 4 0 0 4 4 3 0 SRP54-type protein, GTPase domain AFG1_ATPase PF03969.16 gi|88602110|ref|YP_502288.1| - 0.1 11.4 0.0 4 6.2 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase 5-FTHF_cyc-lig PF01812.20 gi|88602111|ref|YP_502289.1| - 4.8e-31 108.1 0.0 5.4e-31 107.9 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family LPD11 PF18824.1 gi|88602112|ref|YP_502290.1| - 0.0076 16.3 0.7 0.44 10.7 0.0 2.5 2 0 0 2 2 2 1 Large polyvalent protein-associated domain 11 Serine_rich PF08824.10 gi|88602112|ref|YP_502290.1| - 0.037 14.0 1.2 0.38 10.7 0.3 2.2 1 1 1 2 2 2 0 Serine rich protein interaction domain Com_YlbF PF06133.11 gi|88602112|ref|YP_502290.1| - 0.31 11.7 4.5 0.72 10.5 3.1 2.1 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA BofA PF07441.11 gi|88602113|ref|YP_502291.1| - 2.7e-12 46.7 24.1 3.2e-12 46.5 24.1 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF2208 PF09973.9 gi|88602113|ref|YP_502291.1| - 0.23 11.0 3.4 0.22 11.1 3.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Big_3_5 PF16640.5 gi|88602114|ref|YP_502292.1| - 2.9e-05 24.2 0.1 0.64 10.2 0.0 3.6 3 0 0 3 3 3 3 Bacterial Ig-like domain (group 3) CarboxypepD_reg PF13620.6 gi|88602114|ref|YP_502292.1| - 0.0012 19.1 0.1 1.4 9.3 0.0 3.4 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|88602114|ref|YP_502292.1| - 0.095 13.1 0.0 11 6.3 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4198) TPR_11 PF13414.6 gi|88602115|ref|YP_502293.1| - 1.1e-07 31.5 0.2 0.022 14.4 0.0 3.7 3 0 0 3 3 3 3 TPR repeat TPR_16 PF13432.6 gi|88602115|ref|YP_502293.1| - 3.1e-05 24.5 1.7 0.011 16.4 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602115|ref|YP_502293.1| - 8.5e-05 23.1 1.3 0.31 12.0 0.1 3.7 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602115|ref|YP_502293.1| - 0.00013 21.8 4.6 0.41 10.9 0.4 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602115|ref|YP_502293.1| - 0.00078 19.7 2.4 18 6.0 0.0 4.6 4 1 1 5 5 5 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602115|ref|YP_502293.1| - 0.0011 18.0 0.3 0.025 13.5 0.0 2.2 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 TPR_19 PF14559.6 gi|88602115|ref|YP_502293.1| - 0.0032 18.0 2.9 12 6.5 0.1 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602115|ref|YP_502293.1| - 0.0064 16.3 5.8 18 5.3 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602115|ref|YP_502293.1| - 0.0077 16.5 2.4 6.7 7.1 0.1 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602115|ref|YP_502293.1| - 0.08 13.1 2.4 2.5 8.3 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2393 PF09624.10 gi|88602116|ref|YP_502294.1| - 0.0027 17.7 3.1 0.1 12.6 0.0 2.7 1 1 2 3 3 3 2 Protein of unknown function (DUF2393) DUF3426 PF11906.8 gi|88602116|ref|YP_502294.1| - 0.053 13.7 0.0 0.076 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) Lyase_1 PF00206.20 gi|88602117|ref|YP_502295.1| - 7.8e-56 189.7 0.0 1.1e-55 189.2 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|88602117|ref|YP_502295.1| - 1.2e-18 67.4 0.0 3.5e-18 65.9 0.0 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus DHNA PF04038.12 gi|88602118|ref|YP_502296.1| - 5.6e-38 129.8 0.0 6.3e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Transglut_prok PF09017.10 gi|88602118|ref|YP_502296.1| - 0.03 13.7 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 Microbial transglutaminase TatD_DNase PF01026.21 gi|88602119|ref|YP_502297.1| - 6.3e-17 61.8 0.0 6.3e-14 52.0 0.0 2.0 2 0 0 2 2 2 2 TatD related DNase DUF424 PF04242.13 gi|88602120|ref|YP_502298.1| - 4.4e-26 91.0 0.0 4.9e-26 90.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|88602121|ref|YP_502299.1| - 2.6e-47 161.4 0.1 3.1e-47 161.1 0.1 1.1 1 0 0 1 1 1 1 NMD3 family OTCace PF00185.24 gi|88602121|ref|YP_502299.1| - 0.033 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DZR PF12773.7 gi|88602121|ref|YP_502299.1| - 0.22 11.6 11.3 0.057 13.5 6.2 2.4 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|88602121|ref|YP_502299.1| - 2.2 7.8 14.3 3.1 7.3 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-CHY PF05495.12 gi|88602121|ref|YP_502299.1| - 2.6 8.6 5.9 0.58 10.7 1.9 2.0 2 0 0 2 2 2 0 CHY zinc finger Met_10 PF02475.16 gi|88602122|ref|YP_502300.1| - 3e-43 147.9 0.0 4e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|88602122|ref|YP_502300.1| - 7.1e-06 25.7 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|88602122|ref|YP_502300.1| - 0.00012 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|88602122|ref|YP_502300.1| - 0.00043 20.1 0.0 0.0024 17.7 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602122|ref|YP_502300.1| - 0.00045 20.9 0.0 0.001 19.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|88602122|ref|YP_502300.1| - 0.00048 20.1 0.0 0.00072 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|88602122|ref|YP_502300.1| - 0.0041 16.3 0.0 0.0054 16.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 gi|88602122|ref|YP_502300.1| - 0.0046 16.3 0.0 0.0068 15.8 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase RrnaAD PF00398.20 gi|88602122|ref|YP_502300.1| - 0.028 13.5 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|88602122|ref|YP_502300.1| - 0.054 14.1 0.0 0.17 12.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain PrmA PF06325.13 gi|88602122|ref|YP_502300.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PRMT5 PF05185.16 gi|88602122|ref|YP_502300.1| - 0.18 11.6 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase tRNA_U5-meth_tr PF05958.11 gi|88602122|ref|YP_502300.1| - 0.19 10.7 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Flavoprotein PF02441.19 gi|88602123|ref|YP_502301.1| - 6.4e-40 136.5 0.9 9.2e-40 136.0 0.9 1.2 1 0 0 1 1 1 1 Flavoprotein DFP PF04127.15 gi|88602123|ref|YP_502301.1| - 1.2e-29 103.5 0.0 4.9e-29 101.5 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein GHMP_kinases_N PF00288.26 gi|88602124|ref|YP_502302.1| - 1.1e-09 38.4 0.3 1.8e-09 37.7 0.3 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain PPS_PS PF02006.16 gi|88602125|ref|YP_502303.1| - 5e-64 215.1 0.2 6.3e-64 214.7 0.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase HEM4 PF02602.15 gi|88602125|ref|YP_502303.1| - 0.058 12.7 0.1 0.13 11.6 0.1 1.7 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD SnoaL_4 PF13577.6 gi|88602125|ref|YP_502303.1| - 0.1 12.7 0.7 36 4.5 0.0 3.3 2 1 2 4 4 4 0 SnoaL-like domain Rep_fac_C PF08542.11 gi|88602126|ref|YP_502304.1| - 3.3e-11 43.4 0.2 7.6e-11 42.3 0.2 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|88602126|ref|YP_502304.1| - 3.5e-09 36.6 0.0 9.1e-09 35.3 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|88602126|ref|YP_502304.1| - 3.4e-08 34.0 0.0 1.3e-07 32.1 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|88602126|ref|YP_502304.1| - 1.4e-06 28.8 0.3 9.8e-05 22.8 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|88602126|ref|YP_502304.1| - 2.4e-05 24.4 0.0 5.1e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|88602126|ref|YP_502304.1| - 0.0004 20.1 0.1 0.0053 16.5 0.0 2.5 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|88602126|ref|YP_502304.1| - 0.00075 18.8 0.0 0.0011 18.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|88602126|ref|YP_502304.1| - 0.0041 17.3 0.0 0.0091 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|88602126|ref|YP_502304.1| - 0.0093 16.3 0.1 0.044 14.1 0.1 2.1 2 0 0 2 2 2 1 AAA C-terminal domain AAA_22 PF13401.6 gi|88602126|ref|YP_502304.1| - 0.017 15.4 0.1 0.094 13.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|88602126|ref|YP_502304.1| - 0.03 13.7 0.0 0.052 12.9 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 gi|88602126|ref|YP_502304.1| - 0.037 14.1 0.0 2.9 8.0 0.0 2.8 3 0 0 3 3 3 0 Sigma-54 interaction domain tRNA_bind_3 PF17176.4 gi|88602126|ref|YP_502304.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 tRNA-binding domain N6-adenineMlase PF10237.9 gi|88602126|ref|YP_502304.1| - 0.067 13.0 0.3 0.14 12.0 0.1 1.6 2 0 0 2 2 2 0 Probable N6-adenine methyltransferase AAA_32 PF13654.6 gi|88602126|ref|YP_502304.1| - 0.068 11.9 0.0 0.16 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88602126|ref|YP_502304.1| - 0.08 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|88602126|ref|YP_502304.1| - 0.086 12.6 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|88602126|ref|YP_502304.1| - 0.088 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.12 gi|88602127|ref|YP_502305.1| - 2e-23 82.9 0.0 3.2e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602127|ref|YP_502305.1| - 2.9e-20 72.8 0.0 4.7e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602127|ref|YP_502305.1| - 6.2e-17 62.2 0.0 1e-16 61.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602127|ref|YP_502305.1| - 1.8e-16 60.4 0.0 2.3e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602127|ref|YP_502305.1| - 6e-14 52.1 0.0 7.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602127|ref|YP_502305.1| - 5.4e-13 48.8 0.0 3.5e-12 46.2 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|88602127|ref|YP_502305.1| - 2.7e-05 23.9 0.0 3.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|88602127|ref|YP_502305.1| - 0.0058 15.6 0.0 0.016 14.1 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|88602127|ref|YP_502305.1| - 0.0068 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 mRNA capping enzyme CMAS PF02353.20 gi|88602127|ref|YP_502305.1| - 0.016 14.6 0.0 0.031 13.6 0.0 1.5 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|88602127|ref|YP_502305.1| - 0.017 15.1 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|88602127|ref|YP_502305.1| - 0.029 13.9 0.0 0.075 12.6 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|88602127|ref|YP_502305.1| - 0.04 13.4 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_29 PF03141.16 gi|88602127|ref|YP_502305.1| - 0.083 11.4 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|88602127|ref|YP_502305.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_5 PF01795.19 gi|88602127|ref|YP_502305.1| - 0.14 11.7 0.0 0.49 9.8 0.0 1.8 1 1 1 2 2 2 0 MraW methylase family Methyltransf_32 PF13679.6 gi|88602127|ref|YP_502305.1| - 0.25 11.3 0.0 0.37 10.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain AC_N PF16214.5 gi|88602128|ref|YP_502306.1| - 1.8 7.6 8.5 2.2 7.3 8.5 1.0 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region Chitin_synth_2 PF03142.15 gi|88602128|ref|YP_502306.1| - 2 7.0 6.9 2.5 6.6 6.9 1.1 1 0 0 1 1 1 0 Chitin synthase TMEM169 PF15052.6 gi|88602128|ref|YP_502306.1| - 5.1 7.2 10.0 1.5 9.0 2.1 2.4 1 1 1 2 2 2 0 TMEM169 protein family Glyco_hydro_57 PF03065.15 gi|88602129|ref|YP_502307.1| - 2.2e-49 168.5 0.0 8.1e-49 166.6 0.0 2.0 3 1 0 3 3 3 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|88602129|ref|YP_502307.1| - 0.042 13.7 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase CRAL_TRIO PF00650.20 gi|88602129|ref|YP_502307.1| - 0.08 12.7 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 CRAL/TRIO domain Glycos_transf_1 PF00534.20 gi|88602130|ref|YP_502308.1| - 2.1e-31 108.8 0.0 3.9e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88602130|ref|YP_502308.1| - 1e-25 90.7 0.0 1.7e-25 90.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88602130|ref|YP_502308.1| - 1.9e-24 86.6 1.7 2.7e-24 86.1 0.9 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|88602130|ref|YP_502308.1| - 1.9e-12 47.4 0.6 2.5e-07 30.6 0.7 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|88602130|ref|YP_502308.1| - 4.7e-12 46.6 0.0 1.7e-11 44.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|88602130|ref|YP_502308.1| - 9.7e-09 35.5 0.0 2.8e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 DNA_pol_B PF00136.21 gi|88602132|ref|YP_502310.1| - 1.1e-18 67.2 0.1 2e-09 36.7 0.0 3.1 2 1 1 3 3 3 3 DNA polymerase family B Response_reg PF00072.24 gi|88602133|ref|YP_502311.1| - 7.9e-24 84.0 0.1 2.4e-23 82.4 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain MCPsignal PF00015.21 gi|88602133|ref|YP_502311.1| - 0.016 15.0 0.1 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Serine_rich PF08824.10 gi|88602133|ref|YP_502311.1| - 0.032 14.2 0.4 0.054 13.5 0.4 1.3 1 0 0 1 1 1 0 Serine rich protein interaction domain APG6_N PF17675.1 gi|88602133|ref|YP_502311.1| - 0.07 13.7 3.8 0.11 13.0 1.0 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region BLOC1_2 PF10046.9 gi|88602133|ref|YP_502311.1| - 0.075 13.3 1.6 0.12 12.7 1.6 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BORCS7 PF16088.5 gi|88602133|ref|YP_502311.1| - 0.15 12.4 2.2 0.24 11.7 2.2 1.3 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 7 BORCS8 PF10167.9 gi|88602133|ref|YP_502311.1| - 0.17 11.8 3.0 0.4 10.6 3.0 1.6 1 1 0 1 1 1 0 BLOC-1-related complex sub-unit 8 VSG_B PF13206.6 gi|88602133|ref|YP_502311.1| - 0.23 10.7 1.1 0.28 10.4 1.1 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain Na_H_Exchanger PF00999.21 gi|88602134|ref|YP_502312.1| - 2.4e-58 197.8 51.4 3.1e-58 197.4 51.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF3949 PF13133.6 gi|88602134|ref|YP_502312.1| - 0.82 10.2 2.2 0.75 10.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3949) NikR_C PF08753.11 gi|88602135|ref|YP_502313.1| - 7.3e-31 106.2 4.8 1.2e-30 105.4 4.8 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|88602135|ref|YP_502313.1| - 7.3e-07 28.9 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|88602135|ref|YP_502313.1| - 0.0077 16.3 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Methyltransf_11 PF08241.12 gi|88602136|ref|YP_502314.1| - 1.4e-12 48.1 0.0 2.1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602136|ref|YP_502314.1| - 4.8e-12 46.4 0.0 9.2e-12 45.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602136|ref|YP_502314.1| - 2.7e-08 33.8 0.0 3.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602136|ref|YP_502314.1| - 7.9e-07 29.0 0.0 1.1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602136|ref|YP_502314.1| - 0.0037 18.0 0.1 0.018 15.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602136|ref|YP_502314.1| - 0.0049 16.2 0.0 0.0069 15.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MFS_1 PF07690.16 gi|88602137|ref|YP_502315.1| - 5.2e-21 75.0 54.8 2.5e-19 69.4 41.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily KH_7 PF17214.3 gi|88602138|ref|YP_502316.1| - 3.2e-27 94.3 4.4 1.1e-26 92.5 2.4 2.8 3 0 0 3 3 3 1 KH domain Beta-Casp PF10996.8 gi|88602138|ref|YP_502316.1| - 1.2e-22 80.3 0.0 2.4e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|88602138|ref|YP_502316.1| - 1.5e-14 53.7 0.3 5e-14 52.0 0.0 2.1 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|88602138|ref|YP_502316.1| - 3.5e-12 46.2 0.0 5.4e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88602138|ref|YP_502316.1| - 7.9e-12 45.6 0.2 4.6e-07 30.0 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88602138|ref|YP_502316.1| - 1.8e-09 37.4 0.0 4.1e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|88602138|ref|YP_502316.1| - 1e-06 28.5 4.1 1e-05 25.2 0.2 2.8 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|88602138|ref|YP_502316.1| - 0.00025 21.0 0.0 0.00087 19.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|88602138|ref|YP_502316.1| - 0.026 14.3 0.0 0.095 12.5 0.0 2.0 1 0 0 1 1 1 0 KH domain KH_4 PF13083.6 gi|88602138|ref|YP_502316.1| - 0.079 12.8 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 KH domain DUF3489 PF11994.8 gi|88602138|ref|YP_502316.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) 3H PF02829.14 gi|88602138|ref|YP_502316.1| - 0.11 12.8 0.1 0.56 10.5 0.0 2.2 2 0 0 2 2 2 0 3H domain Proteasome PF00227.26 gi|88602139|ref|YP_502317.1| - 8.2e-54 182.0 0.8 9.3e-54 181.8 0.8 1.0 1 0 0 1 1 1 1 Proteasome subunit Glyco_transf_25 PF01755.17 gi|88602139|ref|YP_502317.1| - 0.19 11.5 0.1 0.28 11.0 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 25 (LPS biosynthesis protein) CBS PF00571.28 gi|88602140|ref|YP_502318.1| - 9.1e-44 147.7 8.3 1.8e-14 53.9 0.2 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.26 gi|88602141|ref|YP_502319.1| - 1.1e-35 123.1 0.4 1.3e-35 123.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Ribosomal_L11 PF00298.19 gi|88602141|ref|YP_502319.1| - 0.08 13.5 0.2 0.16 12.5 0.1 1.5 1 1 0 1 1 1 0 Ribosomal protein L11, RNA binding domain Amidohydro_1 PF01979.20 gi|88602142|ref|YP_502320.1| - 6.7e-18 65.1 0.2 1.5e-15 57.4 0.2 2.5 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|88602142|ref|YP_502320.1| - 8.5e-09 35.2 0.0 2.3e-08 33.8 0.0 1.6 2 0 0 2 2 2 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|88602142|ref|YP_502320.1| - 6.3e-06 25.9 0.7 0.00024 20.7 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF2292 PF10055.9 gi|88602142|ref|YP_502320.1| - 0.36 10.5 1.7 0.68 9.6 1.7 1.4 1 0 0 1 1 1 0 Uncharacterized small protein (DUF2292) F420_ligase PF01996.16 gi|88602143|ref|YP_502321.1| - 1.1e-53 182.1 0.0 1.3e-53 181.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase MIP PF00230.20 gi|88602144|ref|YP_502322.1| - 7.1e-46 156.7 18.8 8.1e-46 156.6 18.8 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2180 PF09947.9 gi|88602145|ref|YP_502323.1| - 4.1e-36 122.8 5.1 4.5e-36 122.6 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|88602145|ref|YP_502323.1| - 6.6e-05 23.6 2.9 0.00047 20.9 1.0 2.1 2 0 0 2 2 2 1 DDE_Tnp_1-like zinc-ribbon Prok-RING_1 PF14446.6 gi|88602145|ref|YP_502323.1| - 0.028 14.3 6.9 0.52 10.3 2.7 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 FYVE PF01363.21 gi|88602145|ref|YP_502323.1| - 0.044 13.9 0.4 0.057 13.6 0.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-AN1 PF01428.16 gi|88602145|ref|YP_502323.1| - 0.055 13.6 1.6 0.31 11.2 0.3 2.2 2 1 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_9 PF14369.6 gi|88602145|ref|YP_502323.1| - 0.068 13.4 1.9 5.4 7.4 0.3 2.7 2 1 0 2 2 2 0 zinc-ribbon DUF2614 PF11023.8 gi|88602145|ref|YP_502323.1| - 0.13 12.4 3.0 0.14 12.3 0.8 1.8 2 0 0 2 2 2 0 Zinc-ribbon containing domain zf-UBP_var PF17807.1 gi|88602145|ref|YP_502323.1| - 0.39 10.5 3.0 0.23 11.2 1.0 1.5 2 0 0 2 2 2 0 Variant UBP zinc finger DUF2193 PF09959.9 gi|88602146|ref|YP_502324.1| - 3.8e-275 913.0 2.7 4.3e-275 912.8 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) P5CR_dimer PF14748.6 gi|88602147|ref|YP_502325.1| - 1.9e-07 31.3 0.1 3.2e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|88602147|ref|YP_502325.1| - 0.0031 18.1 0.0 0.042 14.4 0.0 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|88602147|ref|YP_502325.1| - 0.096 12.7 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF3185 PF11381.8 gi|88602148|ref|YP_502326.1| - 0.006 16.6 4.5 1.2 9.2 0.1 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) Thioredoxin PF00085.20 gi|88602148|ref|YP_502326.1| - 0.028 14.4 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin DUF836 PF05768.14 gi|88602148|ref|YP_502326.1| - 0.062 13.7 0.0 0.15 12.5 0.0 1.6 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) VIT1 PF01988.19 gi|88602148|ref|YP_502326.1| - 2.8 7.8 11.1 6.1 6.6 0.9 3.7 3 1 0 3 3 3 0 VIT family Glutaredoxin PF00462.24 gi|88602149|ref|YP_502327.1| - 0.0034 17.6 0.0 0.0056 16.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin PilN_bio_d PF18222.1 gi|88602149|ref|YP_502327.1| - 0.023 15.1 0.1 0.031 14.7 0.1 1.2 1 0 0 1 1 1 0 PilN biogenesis protein dimerization domain DUF836 PF05768.14 gi|88602149|ref|YP_502327.1| - 0.047 14.1 0.1 0.078 13.4 0.1 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) 4HB_MCP_1 PF12729.7 gi|88602149|ref|YP_502327.1| - 0.12 11.9 1.3 0.19 11.3 0.5 1.7 1 1 1 2 2 2 0 Four helix bundle sensory module for signal transduction TMEM132D_C PF15706.5 gi|88602149|ref|YP_502327.1| - 0.17 11.7 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term DGC PF08859.11 gi|88602151|ref|YP_502329.1| - 6.6e-25 87.3 0.9 7.4e-25 87.1 0.9 1.0 1 0 0 1 1 1 1 DGC domain DGC PF08859.11 gi|88602152|ref|YP_502330.1| - 1.5e-33 115.1 0.5 1.5e-33 115.1 0.5 1.5 2 0 0 2 2 2 1 DGC domain Thioredoxin_3 PF13192.6 gi|88602153|ref|YP_502331.1| - 5.7e-24 84.0 1.5 6.2e-24 83.8 1.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|88602153|ref|YP_502331.1| - 0.0052 17.0 0.3 0.051 13.7 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin Thioredoxin PF00085.20 gi|88602153|ref|YP_502331.1| - 0.073 13.1 0.0 0.081 12.9 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin DUF169 PF02596.15 gi|88602154|ref|YP_502332.1| - 3.8e-44 151.1 0.0 4.6e-44 150.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 CoA_trans PF01144.23 gi|88602154|ref|YP_502332.1| - 0.035 13.5 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase ArsP_1 PF03773.13 gi|88602155|ref|YP_502333.1| - 3.2e-73 246.5 21.5 3.6e-73 246.3 21.5 1.0 1 0 0 1 1 1 1 Predicted permease CoA_binding_3 PF13727.6 gi|88602155|ref|YP_502333.1| - 0.2 11.6 2.1 0.94 9.5 0.7 2.6 2 0 0 2 2 2 0 CoA-binding domain ArsP_1 PF03773.13 gi|88602156|ref|YP_502334.1| - 9.3e-56 189.1 24.0 1.1e-55 188.9 24.0 1.0 1 0 0 1 1 1 1 Predicted permease CbtB PF09489.10 gi|88602156|ref|YP_502334.1| - 8.3 6.6 6.1 18 5.5 1.4 3.4 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) Carb_bind PF10645.9 gi|88602157|ref|YP_502335.1| - 1.5e-05 25.1 57.9 0.31 11.3 15.3 5.1 1 1 3 5 5 5 5 Carbohydrate binding IGFL PF14653.6 gi|88602157|ref|YP_502335.1| - 0.00035 20.5 46.6 0.084 12.9 10.1 4.1 1 1 3 4 4 4 4 Insulin growth factor-like family zf-RING_7 PF02591.15 gi|88602158|ref|YP_502336.1| - 0.14 12.4 0.3 1.5 9.0 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain DsbD_2 PF13386.6 gi|88602160|ref|YP_502338.1| - 4.5e-29 101.8 17.9 5.3e-29 101.6 17.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|88602160|ref|YP_502338.1| - 2e-06 27.8 20.3 2.5e-06 27.6 20.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MpPF26 PF07666.11 gi|88602160|ref|YP_502338.1| - 1.6 8.9 8.1 0.57 10.3 4.2 2.1 2 0 0 2 2 2 0 M penetrans paralogue family 26 DUF166 PF02593.14 gi|88602162|ref|YP_502340.1| - 1.8e-27 96.3 0.0 2.5e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function XPA_N PF01286.18 gi|88602162|ref|YP_502340.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 XPA protein N-terminal SBF PF01758.16 gi|88602163|ref|YP_502341.1| - 6.2e-53 179.4 14.5 6.2e-53 179.4 14.5 2.9 3 0 0 3 3 3 2 Sodium Bile acid symporter family SBF_like PF13593.6 gi|88602163|ref|YP_502341.1| - 3.4e-07 29.9 21.2 4.7e-07 29.4 21.2 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) EMP70 PF02990.16 gi|88602163|ref|YP_502341.1| - 7.2 5.2 11.6 0.77 8.4 7.3 1.7 2 0 0 2 2 2 0 Endomembrane protein 70 HTH_5 PF01022.20 gi|88602164|ref|YP_502342.1| - 9.9e-13 47.7 0.6 2e-12 46.8 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|88602164|ref|YP_502342.1| - 2.4e-12 46.7 0.0 3.4e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|88602164|ref|YP_502342.1| - 0.00019 21.5 0.0 0.00032 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|88602164|ref|YP_502342.1| - 0.0034 17.8 0.0 0.0049 17.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|88602164|ref|YP_502342.1| - 0.0095 15.5 0.2 0.022 14.3 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|88602164|ref|YP_502342.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_micro PF17007.5 gi|88602164|ref|YP_502342.1| - 0.022 13.6 0.0 0.023 13.5 0.0 1.1 1 0 0 1 1 1 0 HTH-like TrmB PF01978.19 gi|88602164|ref|YP_502342.1| - 0.029 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|88602164|ref|YP_502342.1| - 0.059 13.5 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|88602164|ref|YP_502342.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|88602164|ref|YP_502342.1| - 0.11 12.5 0.3 0.22 11.6 0.1 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix Rio2_N PF09202.11 gi|88602164|ref|YP_502342.1| - 0.16 12.2 0.1 0.25 11.6 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal LMWPc PF01451.21 gi|88602165|ref|YP_502343.1| - 6.8e-19 68.7 0.0 9.2e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Fer4 PF00037.27 gi|88602166|ref|YP_502344.1| - 7.7e-13 47.7 10.7 1.1e-06 28.2 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88602166|ref|YP_502344.1| - 1.6e-09 37.8 11.4 1.6e-09 37.8 11.4 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602166|ref|YP_502344.1| - 2.4e-09 36.9 13.1 1.2e-05 25.1 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602166|ref|YP_502344.1| - 2.4e-08 34.8 14.4 0.00013 22.8 1.4 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|88602166|ref|YP_502344.1| - 8e-08 32.8 18.1 0.0001 22.8 1.5 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602166|ref|YP_502344.1| - 5.2e-07 29.4 12.0 2.7e-05 24.0 1.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88602166|ref|YP_502344.1| - 2.5e-06 27.5 11.9 2.5e-06 27.5 11.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602166|ref|YP_502344.1| - 4.8e-06 26.9 15.5 0.00062 20.2 1.0 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602166|ref|YP_502344.1| - 1.7e-05 24.8 14.4 1.7e-05 24.8 14.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88602166|ref|YP_502344.1| - 3.5e-05 24.0 11.1 0.00023 21.4 1.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602166|ref|YP_502344.1| - 0.00047 20.6 0.8 0.00047 20.6 0.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602166|ref|YP_502344.1| - 0.0038 17.4 10.3 0.0062 16.7 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88602166|ref|YP_502344.1| - 0.011 16.3 13.6 0.034 14.7 0.9 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88602166|ref|YP_502344.1| - 0.035 15.0 0.7 0.035 15.0 0.7 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602166|ref|YP_502344.1| - 0.057 14.4 5.4 0.057 14.4 5.4 3.1 3 1 0 3 3 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|88602166|ref|YP_502344.1| - 2.3 8.4 9.1 1.5 9.0 3.0 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S zf-C2H2_11 PF16622.5 gi|88602166|ref|YP_502344.1| - 8.1 6.3 12.0 8.6 6.2 2.6 2.7 2 0 0 2 2 2 0 zinc-finger C2H2-type Fer4_15 PF13459.6 gi|88602166|ref|YP_502344.1| - 9.4 7.1 15.2 3.2 8.6 1.3 3.0 1 1 2 3 3 3 0 4Fe-4S single cluster domain CdhD PF03599.16 gi|88602167|ref|YP_502345.1| - 1.6e-12 46.8 0.0 2.4e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit MazE_antitoxin PF04014.18 gi|88602168|ref|YP_502346.1| - 2.6e-06 27.2 0.0 4.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Ly49 PF08391.10 gi|88602169|ref|YP_502347.1| - 0.24 11.8 1.8 16 5.8 0.1 2.1 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region Zn-ribbon_8 PF09723.10 gi|88602171|ref|YP_502349.1| - 2.1e-05 24.5 3.1 3.3e-05 23.9 3.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|88602171|ref|YP_502349.1| - 0.00038 20.1 2.6 0.00069 19.2 2.6 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|88602171|ref|YP_502349.1| - 0.00061 19.8 1.1 0.00067 19.7 1.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|88602171|ref|YP_502349.1| - 0.0025 17.8 2.0 0.003 17.6 2.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon TFIIS_C PF01096.18 gi|88602171|ref|YP_502349.1| - 0.0028 17.5 3.1 0.44 10.5 0.6 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|88602171|ref|YP_502349.1| - 0.0071 16.0 1.2 0.0076 15.9 1.2 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn_Tnp_IS1595 PF12760.7 gi|88602171|ref|YP_502349.1| - 0.02 14.8 3.2 2.6 8.1 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Elf1 PF05129.13 gi|88602171|ref|YP_502349.1| - 0.034 14.2 1.7 1.5 8.9 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Prok-RING_1 PF14446.6 gi|88602171|ref|YP_502349.1| - 0.044 13.7 3.2 0.058 13.3 3.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-H2C2_2 PF13465.6 gi|88602171|ref|YP_502349.1| - 0.059 13.8 2.2 1.2 9.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Anti-TRAP PF15777.5 gi|88602171|ref|YP_502349.1| - 0.062 13.3 2.0 0.072 13.1 2.0 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf_UBZ PF18439.1 gi|88602171|ref|YP_502349.1| - 0.099 12.3 1.9 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1 PF03811.13 gi|88602171|ref|YP_502349.1| - 0.1 12.3 4.0 0.52 10.1 0.7 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2H2_4 PF13894.6 gi|88602171|ref|YP_502349.1| - 0.11 13.4 0.3 0.11 13.4 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|88602171|ref|YP_502349.1| - 0.12 12.8 0.5 0.12 12.8 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.6 gi|88602171|ref|YP_502349.1| - 0.14 11.6 7.2 0.42 10.1 1.9 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|88602171|ref|YP_502349.1| - 0.18 11.8 4.4 1.8 8.6 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_11 PF16622.5 gi|88602171|ref|YP_502349.1| - 0.19 11.5 2.1 0.84 9.5 0.4 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-trcl PF13451.6 gi|88602171|ref|YP_502349.1| - 0.23 11.4 5.3 0.47 10.4 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|88602171|ref|YP_502349.1| - 0.63 10.1 4.3 0.88 9.7 0.5 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-AN1 PF01428.16 gi|88602171|ref|YP_502349.1| - 0.64 10.2 6.5 1.9 8.7 0.4 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Mss51 PF13824.6 gi|88602171|ref|YP_502349.1| - 0.69 10.1 5.2 1.6 8.9 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|88602171|ref|YP_502349.1| - 0.83 9.6 10.2 4.4e+02 0.9 10.2 2.2 1 1 0 1 1 1 0 HIT zinc finger zf-C2H2_3 PF13878.6 gi|88602171|ref|YP_502349.1| - 0.93 9.4 5.0 4.9 7.1 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF35_N PF12172.8 gi|88602171|ref|YP_502349.1| - 1.4 8.9 6.9 3.4 7.6 1.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.6 gi|88602171|ref|YP_502349.1| - 1.5 8.7 6.0 41 4.0 5.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|88602171|ref|YP_502349.1| - 1.5 9.3 5.9 3.7 8.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Rubredoxin_2 PF18073.1 gi|88602171|ref|YP_502349.1| - 1.5 8.6 8.8 1.4 8.7 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|88602171|ref|YP_502349.1| - 1.5 8.4 10.6 3.7 7.1 0.6 2.5 2 1 1 3 3 3 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|88602171|ref|YP_502349.1| - 5.4 7.8 8.3 2.2 9.0 1.7 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 K_trans PF02705.16 gi|88602172|ref|YP_502350.1| - 5.2e-159 530.2 34.4 6e-159 530.0 34.4 1.0 1 0 0 1 1 1 1 K+ potassium transporter SSF PF00474.17 gi|88602173|ref|YP_502351.1| - 4.4e-53 180.6 43.5 5.9e-53 180.2 43.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TPR_8 PF13181.6 gi|88602174|ref|YP_502352.1| - 2.1e-13 49.4 5.6 0.0035 17.4 0.0 4.9 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602174|ref|YP_502352.1| - 8.5e-12 44.8 6.2 9e-05 23.0 0.4 4.3 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602174|ref|YP_502352.1| - 1.4e-11 43.5 10.0 0.00048 20.0 0.2 4.6 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602174|ref|YP_502352.1| - 4.5e-11 43.2 7.9 2.4e-05 24.9 2.9 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602174|ref|YP_502352.1| - 8.5e-11 41.2 8.8 0.0018 18.0 0.1 4.7 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602174|ref|YP_502352.1| - 4.7e-10 39.8 8.2 9.7e-07 29.2 1.2 3.3 2 1 2 4 4 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602174|ref|YP_502352.1| - 9.7e-08 32.0 6.1 0.062 13.4 0.1 4.1 3 1 1 4 4 4 3 Fis1 C-terminal tetratricopeptide repeat TPR_11 PF13414.6 gi|88602174|ref|YP_502352.1| - 1.1e-07 31.5 10.0 0.0013 18.4 0.0 4.5 5 0 0 5 5 5 2 TPR repeat TPR_17 PF13431.6 gi|88602174|ref|YP_502352.1| - 1.2e-06 28.4 4.4 0.1 13.0 0.0 4.7 5 0 0 5 5 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602174|ref|YP_502352.1| - 1.6e-06 28.3 4.6 4.7e-06 26.7 3.7 2.2 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|88602174|ref|YP_502352.1| - 2.4e-06 26.7 0.9 0.011 14.7 0.2 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_12 PF13424.6 gi|88602174|ref|YP_502352.1| - 4.4e-06 26.9 13.7 0.004 17.4 4.2 4.1 2 1 2 4 4 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602174|ref|YP_502352.1| - 1.2e-05 25.0 2.6 0.061 13.4 0.1 3.8 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602174|ref|YP_502352.1| - 3.2e-05 24.0 0.7 0.0046 17.1 0.3 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat DUF3808 PF10300.9 gi|88602174|ref|YP_502352.1| - 0.00036 19.4 0.3 0.0031 16.3 0.2 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3808) HrpB1_HrpK PF09613.10 gi|88602174|ref|YP_502352.1| - 0.001 18.7 0.1 0.0066 16.1 0.0 2.0 1 1 0 1 1 1 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_15 PF13429.6 gi|88602174|ref|YP_502352.1| - 0.0013 18.0 3.2 0.0017 17.6 1.2 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88602174|ref|YP_502352.1| - 0.0015 18.0 4.4 0.012 15.0 2.0 2.7 1 1 1 2 2 2 1 Coatomer epsilon subunit DUF3856 PF12968.7 gi|88602174|ref|YP_502352.1| - 0.0015 18.6 0.8 0.48 10.5 0.2 3.2 3 0 0 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|88602174|ref|YP_502352.1| - 0.0029 17.4 10.4 1.5 8.8 0.4 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602174|ref|YP_502352.1| - 0.0046 17.4 0.5 2.4 9.1 0.4 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat PALP PF00291.25 gi|88602174|ref|YP_502352.1| - 0.012 15.0 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme TPR_6 PF13174.6 gi|88602174|ref|YP_502352.1| - 0.02 15.5 4.7 1.8 9.3 0.1 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat Type_III_YscG PF09477.10 gi|88602174|ref|YP_502352.1| - 0.031 14.3 0.8 1.5 8.9 0.1 2.2 1 1 1 2 2 2 0 Bacterial type II secretion system chaperone protein (type_III_yscG) ChAPs PF09295.10 gi|88602174|ref|YP_502352.1| - 0.087 11.8 0.2 0.11 11.5 0.2 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF5113 PF17140.4 gi|88602174|ref|YP_502352.1| - 0.1 12.4 5.2 0.68 9.7 0.3 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF5113) TPR_MalT PF17874.1 gi|88602174|ref|YP_502352.1| - 0.13 11.6 6.0 0.24 10.7 1.3 2.3 1 1 1 2 2 2 0 MalT-like TPR region BTAD PF03704.17 gi|88602174|ref|YP_502352.1| - 0.13 12.7 3.2 0.34 11.3 3.2 1.7 1 1 0 1 1 1 0 Bacterial transcriptional activator domain PTS_IIA PF02255.16 gi|88602174|ref|YP_502352.1| - 0.33 11.0 2.7 10 6.3 0.1 2.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit YfdX PF10938.8 gi|88602174|ref|YP_502352.1| - 1.6 8.7 6.8 2.2 8.2 0.1 3.1 3 1 0 3 3 3 0 YfdX protein TPR_20 PF14561.6 gi|88602174|ref|YP_502352.1| - 1.9 8.9 8.2 1.7 9.0 1.0 3.0 2 1 2 4 4 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|88602174|ref|YP_502352.1| - 7.1 6.8 9.0 1.5 8.9 0.3 3.1 2 1 0 3 3 3 0 MIT (microtubule interacting and transport) domain N6_N4_Mtase PF01555.18 gi|88602175|ref|YP_502353.1| - 5.4e-36 124.5 0.1 1.1e-35 123.5 0.1 1.5 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|88602175|ref|YP_502353.1| - 0.00033 21.2 0.0 2.3 9.0 0.0 3.1 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|88602175|ref|YP_502353.1| - 0.00064 19.3 0.0 0.57 9.7 0.0 2.2 2 0 0 2 2 2 2 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|88602175|ref|YP_502353.1| - 0.0012 18.6 0.0 0.33 10.6 0.0 2.5 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|88602175|ref|YP_502353.1| - 0.0019 18.9 0.0 0.023 15.4 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602175|ref|YP_502353.1| - 0.013 15.3 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain AT_hook PF02178.19 gi|88602175|ref|YP_502353.1| - 0.6 10.2 4.3 1.5 9.0 4.3 1.7 1 0 0 1 1 1 0 AT hook motif HATPase_c PF02518.26 gi|88602176|ref|YP_502354.1| - 2e-21 76.6 0.1 5.2e-21 75.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88602176|ref|YP_502354.1| - 9.5e-14 51.4 0.1 2.6e-09 37.1 0.0 3.4 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|88602176|ref|YP_502354.1| - 5.7e-12 45.8 0.5 6.8e-09 35.9 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|88602176|ref|YP_502354.1| - 1e-09 38.5 0.0 0.0035 17.6 0.0 3.1 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|88602176|ref|YP_502354.1| - 1.6e-07 31.3 1.7 2.9e-07 30.4 0.0 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|88602176|ref|YP_502354.1| - 2.7e-07 30.8 0.0 3.3 8.0 0.0 5.2 4 1 0 4 4 4 2 PAS fold HATPase_c_5 PF14501.6 gi|88602176|ref|YP_502354.1| - 2.7e-06 27.2 0.4 0.00019 21.3 0.0 2.7 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 gi|88602176|ref|YP_502354.1| - 0.0001 22.2 0.1 0.00024 20.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88602176|ref|YP_502354.1| - 0.0016 18.4 0.0 0.61 10.2 0.0 2.8 2 0 0 2 2 2 1 PAS domain Ribosomal_S4e PF00900.20 gi|88602176|ref|YP_502354.1| - 0.0092 15.9 0.0 0.041 13.8 0.0 2.1 1 0 0 1 1 1 1 Ribosomal family S4e HATPase_c_2 PF13581.6 gi|88602176|ref|YP_502354.1| - 0.075 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF PF01590.26 gi|88602176|ref|YP_502354.1| - 0.14 12.8 0.0 0.29 11.8 0.0 1.5 1 0 0 1 1 1 0 GAF domain Jnk-SapK_ap_N PF09744.9 gi|88602176|ref|YP_502354.1| - 0.28 11.4 3.7 0.69 10.1 3.7 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 OmpH PF03938.14 gi|88602176|ref|YP_502354.1| - 2 8.7 5.6 3.3 8.0 3.3 2.5 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) Response_reg PF00072.24 gi|88602177|ref|YP_502355.1| - 3.4e-25 88.4 0.8 3.9e-25 88.2 0.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheB_methylest PF01339.17 gi|88602178|ref|YP_502356.1| - 1.4e-51 174.6 0.1 1.6e-51 174.4 0.1 1.0 1 0 0 1 1 1 1 CheB methylesterase PP_kinase_C_1 PF17941.1 gi|88602180|ref|YP_502358.1| - 3.7e-75 251.0 0.2 7.8e-75 250.0 0.0 1.6 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|88602180|ref|YP_502358.1| - 8.1e-66 221.5 0.0 1.5e-65 220.6 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_C PF13090.6 gi|88602180|ref|YP_502358.1| - 1.3e-65 220.1 0.5 2.1e-65 219.4 0.1 1.6 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_N PF13089.6 gi|88602180|ref|YP_502358.1| - 2.1e-38 130.9 0.0 4.3e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|88602180|ref|YP_502358.1| - 1e-12 48.0 0.1 1.2e-07 31.7 0.0 3.4 3 0 0 3 3 3 2 PLD-like domain RuvC PF02075.17 gi|88602181|ref|YP_502359.1| - 2.3e-50 170.3 0.0 2.6e-50 170.2 0.0 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC RuvA_N PF01330.21 gi|88602182|ref|YP_502360.1| - 6.2e-18 64.7 1.8 1.9e-17 63.1 1.4 2.0 2 0 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 gi|88602182|ref|YP_502360.1| - 7.3e-15 55.3 0.3 1.9e-14 54.0 0.3 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_C PF07499.13 gi|88602182|ref|YP_502360.1| - 3.1e-09 37.1 0.6 6.5e-09 36.1 0.6 1.6 1 0 0 1 1 1 1 RuvA, C-terminal domain RHH_1 PF01402.21 gi|88602182|ref|YP_502360.1| - 0.0096 15.8 0.8 0.031 14.2 0.8 2.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PhageMin_Tail PF10145.9 gi|88602182|ref|YP_502360.1| - 0.01 15.7 0.5 0.037 13.9 0.4 1.8 1 1 1 2 2 2 0 Phage-related minor tail protein RuvB_N PF05496.12 gi|88602183|ref|YP_502361.1| - 3.7e-75 251.0 0.0 5.1e-75 250.6 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 gi|88602183|ref|YP_502361.1| - 1e-29 102.1 0.0 1.9e-29 101.2 0.0 1.5 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 gi|88602183|ref|YP_502361.1| - 1.3e-25 89.0 0.0 3.3e-25 87.7 0.0 1.7 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain AAA PF00004.29 gi|88602183|ref|YP_502361.1| - 2.7e-17 63.4 0.0 5.1e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|88602183|ref|YP_502361.1| - 3.5e-07 30.3 0.0 0.018 15.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|88602183|ref|YP_502361.1| - 6.5e-05 22.4 0.1 0.0019 17.6 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|88602183|ref|YP_502361.1| - 0.00021 20.7 0.0 0.00049 19.4 0.0 1.5 2 0 0 2 2 2 1 TIP49 P-loop domain Sigma54_activat PF00158.26 gi|88602183|ref|YP_502361.1| - 0.00085 19.1 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 gi|88602183|ref|YP_502361.1| - 0.0011 19.3 0.0 0.0043 17.5 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|88602183|ref|YP_502361.1| - 0.0015 18.4 0.0 0.064 13.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88602183|ref|YP_502361.1| - 0.0016 18.7 0.1 0.34 11.2 0.0 2.3 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|88602183|ref|YP_502361.1| - 0.002 18.5 0.0 0.0032 17.8 0.0 1.3 1 0 0 1 1 1 1 RNA helicase NTPase_1 PF03266.15 gi|88602183|ref|YP_502361.1| - 0.011 15.6 0.0 0.028 14.3 0.0 1.6 2 0 0 2 2 2 0 NTPase Rad17 PF03215.15 gi|88602183|ref|YP_502361.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain DUF815 PF05673.13 gi|88602183|ref|YP_502361.1| - 0.019 14.2 0.0 0.25 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MCM PF00493.23 gi|88602183|ref|YP_502361.1| - 0.023 13.8 0.0 0.57 9.2 0.0 2.1 1 1 0 1 1 1 0 MCM P-loop domain TsaE PF02367.17 gi|88602183|ref|YP_502361.1| - 0.026 14.5 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|88602183|ref|YP_502361.1| - 0.028 15.0 0.0 0.048 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|88602183|ref|YP_502361.1| - 0.028 13.5 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|88602183|ref|YP_502361.1| - 0.03 14.2 0.0 0.073 13.0 0.0 1.6 2 0 0 2 2 1 0 NACHT domain AAA_14 PF13173.6 gi|88602183|ref|YP_502361.1| - 0.046 13.8 0.0 0.14 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|88602183|ref|YP_502361.1| - 0.055 13.5 0.1 4.2 7.3 0.0 2.1 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.18 gi|88602183|ref|YP_502361.1| - 0.069 13.0 0.1 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein NB-ARC PF00931.22 gi|88602183|ref|YP_502361.1| - 0.081 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|88602183|ref|YP_502361.1| - 0.083 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|88602183|ref|YP_502361.1| - 0.088 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|88602183|ref|YP_502361.1| - 0.093 13.1 0.1 2.9 8.2 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88602183|ref|YP_502361.1| - 0.1 12.9 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|88602183|ref|YP_502361.1| - 0.16 11.1 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|88602183|ref|YP_502361.1| - 0.19 11.5 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|88602183|ref|YP_502361.1| - 0.19 12.2 0.0 0.35 11.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter CAP PF00188.26 gi|88602184|ref|YP_502362.1| - 6.6e-15 56.1 0.0 1.2e-14 55.2 0.0 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CARDB PF07705.11 gi|88602184|ref|YP_502362.1| - 8.3e-09 35.6 0.0 0.00045 20.4 0.0 2.9 2 1 0 2 2 2 2 CARDB Wzt_C PF14524.6 gi|88602184|ref|YP_502362.1| - 0.0029 17.7 0.0 0.0076 16.3 0.0 1.7 1 0 0 1 1 1 1 Wzt C-terminal domain HmuY PF14064.6 gi|88602185|ref|YP_502363.1| - 0.0031 17.7 2.0 0.56 10.4 0.2 2.4 2 0 0 2 2 2 2 HmuY protein Dockerin_1 PF00404.18 gi|88602185|ref|YP_502363.1| - 0.0075 16.4 3.6 0.072 13.3 1.3 2.7 1 1 1 2 2 2 2 Dockerin type I domain EF-hand_6 PF13405.6 gi|88602185|ref|YP_502363.1| - 0.17 11.9 4.7 3.9 7.7 0.1 3.9 3 1 1 4 4 4 0 EF-hand domain TpcC PF12642.7 gi|88602185|ref|YP_502363.1| - 0.22 11.3 2.0 0.23 11.2 0.2 1.9 2 1 0 2 2 2 0 Conjugative transposon protein TcpC EF-hand_1 PF00036.32 gi|88602185|ref|YP_502363.1| - 1.1 9.0 7.9 7.6 6.3 0.0 4.2 3 1 1 4 4 4 0 EF hand DUF2156 PF09924.9 gi|88602186|ref|YP_502364.1| - 8e-49 166.2 0.0 9.1e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2156) DUF5457 PF17540.2 gi|88602186|ref|YP_502364.1| - 0.098 12.8 0.3 0.31 11.2 0.4 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5457) Acetyltransf_10 PF13673.7 gi|88602187|ref|YP_502365.1| - 7.6e-10 38.8 0.0 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88602187|ref|YP_502365.1| - 2.5e-09 37.4 0.0 3e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88602187|ref|YP_502365.1| - 5.2e-07 30.0 0.0 7.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88602187|ref|YP_502365.1| - 0.0021 18.1 0.0 0.003 17.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|88602187|ref|YP_502365.1| - 0.0037 17.2 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Barwin PF00967.17 gi|88602187|ref|YP_502365.1| - 0.025 14.4 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Barwin family PhoU PF01895.19 gi|88602188|ref|YP_502366.1| - 5.9e-25 87.5 6.3 8.3e-18 64.6 2.8 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|88602188|ref|YP_502366.1| - 1.2e-08 34.7 0.0 4e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Armet PF10208.9 gi|88602188|ref|YP_502366.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Degradation arginine-rich protein for mis-folding CheW PF01584.19 gi|88602189|ref|YP_502367.1| - 9.4e-30 103.0 0.2 1.2e-29 102.7 0.2 1.1 1 0 0 1 1 1 1 CheW-like domain CARDB PF07705.11 gi|88602190|ref|YP_502368.1| - 5.6e-23 81.1 0.1 1.5e-07 31.6 0.1 3.8 4 0 0 4 4 4 3 CARDB NPCBM_assoc PF10633.9 gi|88602190|ref|YP_502368.1| - 2.8e-08 33.9 0.3 0.064 13.5 0.1 5.1 5 2 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|88602190|ref|YP_502368.1| - 3e-05 24.2 0.3 0.0018 18.5 0.1 3.0 3 0 0 3 3 3 1 Domain of unknown function DUF11 Glyco_hydro_61 PF03443.14 gi|88602190|ref|YP_502368.1| - 0.00012 22.1 0.1 4.2 7.2 0.0 4.8 4 1 1 5 5 5 1 Glycosyl hydrolase family 61 DUF4832 PF16116.5 gi|88602190|ref|YP_502368.1| - 0.053 13.4 0.0 50 3.6 0.0 3.9 4 1 0 4 4 4 0 Domain of unknown function (DUF4832) TPR_1 PF00515.28 gi|88602191|ref|YP_502369.1| - 2.1e-21 74.8 2.3 2.3e-06 27.2 0.1 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602191|ref|YP_502369.1| - 1.6e-17 62.2 1.0 0.00014 21.7 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602191|ref|YP_502369.1| - 2.8e-17 62.1 0.5 1.3e-08 34.3 0.4 3.2 1 1 2 3 3 3 3 TPR repeat TPR_8 PF13181.6 gi|88602191|ref|YP_502369.1| - 2e-10 40.1 5.7 0.0024 18.0 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602191|ref|YP_502369.1| - 3.6e-08 33.5 1.2 0.046 14.4 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602191|ref|YP_502369.1| - 4.3e-08 33.3 4.3 6.1e-06 26.4 1.9 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602191|ref|YP_502369.1| - 1.4e-06 28.8 0.1 0.00013 22.6 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602191|ref|YP_502369.1| - 1.6e-06 28.1 2.1 0.095 13.1 0.5 3.4 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602191|ref|YP_502369.1| - 0.00019 22.0 0.4 2.5 9.1 0.0 3.3 1 1 2 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602191|ref|YP_502369.1| - 0.0035 17.5 0.2 0.016 15.4 0.1 1.9 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|88602191|ref|YP_502369.1| - 0.0046 16.8 6.2 0.071 13.0 0.4 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602191|ref|YP_502369.1| - 0.0048 16.8 0.6 0.4 10.8 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602191|ref|YP_502369.1| - 0.016 15.7 1.8 0.072 13.6 0.5 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602191|ref|YP_502369.1| - 0.027 14.6 0.1 3.2 8.0 0.0 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|88602191|ref|YP_502369.1| - 0.045 13.8 1.9 15 5.7 0.4 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602191|ref|YP_502369.1| - 0.047 13.8 0.3 5.5 7.1 0.1 2.7 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat DUF169 PF02596.15 gi|88602192|ref|YP_502370.1| - 4.6e-65 219.4 0.0 5.2e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 NAD_kinase PF01513.21 gi|88602193|ref|YP_502371.1| - 8.3e-51 172.9 0.0 9.5e-51 172.7 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|88602193|ref|YP_502371.1| - 0.00073 19.2 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Inositol_P PF00459.25 gi|88602194|ref|YP_502372.1| - 9.2e-34 117.2 0.0 1.1e-33 116.9 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|88602194|ref|YP_502372.1| - 0.0002 20.9 0.1 0.00039 19.9 0.0 1.5 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase, N-terminal domain EFP_N PF08207.12 gi|88602195|ref|YP_502373.1| - 6.4e-05 22.9 0.0 0.00017 21.5 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|88602195|ref|YP_502373.1| - 0.00032 20.7 0.6 0.00071 19.6 0.6 1.6 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold DUF4179 PF13786.6 gi|88602196|ref|YP_502374.1| - 0.14 12.7 0.7 0.3 11.6 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) ParA PF10609.9 gi|88602198|ref|YP_502376.1| - 3.7e-102 341.0 0.1 4.3e-102 340.8 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|88602198|ref|YP_502376.1| - 1.3e-17 64.0 0.0 5.1e-17 62.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|88602198|ref|YP_502376.1| - 1.9e-10 40.9 0.2 1.2e-09 38.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|88602198|ref|YP_502376.1| - 1.8e-08 34.0 0.0 2.8e-08 33.4 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|88602198|ref|YP_502376.1| - 1.1e-07 31.4 0.5 2.2e-06 27.1 0.0 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|88602198|ref|YP_502376.1| - 7.1e-05 22.7 0.2 0.0012 18.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|88602198|ref|YP_502376.1| - 0.00017 21.5 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.18 gi|88602198|ref|YP_502376.1| - 0.00017 21.1 0.0 0.00066 19.2 0.0 2.0 2 1 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|88602198|ref|YP_502376.1| - 0.0014 18.3 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|88602198|ref|YP_502376.1| - 0.0015 18.0 0.1 0.0086 15.6 0.1 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|88602198|ref|YP_502376.1| - 0.0031 17.3 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|88602198|ref|YP_502376.1| - 0.0075 15.3 0.1 0.014 14.4 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|88602198|ref|YP_502376.1| - 0.016 14.5 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein SRP54 PF00448.22 gi|88602198|ref|YP_502376.1| - 0.034 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|88602198|ref|YP_502376.1| - 0.06 13.9 0.0 0.098 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|88602198|ref|YP_502376.1| - 0.06 12.5 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|88602198|ref|YP_502376.1| - 0.074 12.8 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|88602198|ref|YP_502376.1| - 0.13 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|88602198|ref|YP_502376.1| - 0.15 12.0 0.5 0.48 10.3 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase KTI12 PF08433.10 gi|88602198|ref|YP_502376.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|88602198|ref|YP_502376.1| - 0.21 12.0 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zn_Tnp_IS1595 PF12760.7 gi|88602198|ref|YP_502376.1| - 0.24 11.4 0.1 0.24 11.4 0.1 2.2 3 0 0 3 3 2 0 Transposase zinc-ribbon domain Lactamase_B PF00753.27 gi|88602200|ref|YP_502378.1| - 2.8e-13 50.3 1.8 8.8e-13 48.7 1.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88602200|ref|YP_502378.1| - 0.00053 19.6 0.0 0.00094 18.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ACT PF01842.25 gi|88602200|ref|YP_502378.1| - 0.00084 19.1 0.2 0.027 14.2 0.0 3.2 3 0 0 3 3 3 1 ACT domain SIS PF01380.22 gi|88602201|ref|YP_502379.1| - 2.3e-18 66.3 0.1 3.5e-18 65.7 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|88602201|ref|YP_502379.1| - 1.3e-07 31.7 2.2 0.00026 21.0 0.1 2.6 2 1 1 3 3 3 2 SIS domain AAA_19 PF13245.6 gi|88602201|ref|YP_502379.1| - 0.045 14.1 0.5 0.071 13.5 0.5 1.6 1 1 0 1 1 1 0 AAA domain PRMT5 PF05185.16 gi|88602201|ref|YP_502379.1| - 0.055 13.3 0.2 0.25 11.2 0.0 1.9 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Aminotran_1_2 PF00155.21 gi|88602202|ref|YP_502380.1| - 1.4e-56 192.2 0.0 1.6e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|88602202|ref|YP_502380.1| - 1.2e-06 27.7 0.0 1.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|88602202|ref|YP_502380.1| - 0.0042 16.5 0.0 0.0064 15.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|88602202|ref|YP_502380.1| - 0.031 13.6 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88602202|ref|YP_502380.1| - 0.12 10.9 0.0 0.21 10.0 0.0 1.3 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M42 PF05343.14 gi|88602203|ref|YP_502381.1| - 9.2e-102 340.0 0.4 1.1e-101 339.8 0.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|88602203|ref|YP_502381.1| - 1e-09 38.4 0.0 1.7e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|88602203|ref|YP_502381.1| - 0.004 16.8 0.0 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 TPR_1 PF00515.28 gi|88602204|ref|YP_502382.1| - 1.9e-47 157.2 5.7 8.9e-11 41.1 0.3 6.2 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602204|ref|YP_502382.1| - 1e-42 140.8 3.0 7.5e-08 32.0 0.1 7.0 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602204|ref|YP_502382.1| - 3e-41 136.2 6.9 5.4e-09 35.5 0.1 6.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602204|ref|YP_502382.1| - 1e-38 131.7 8.9 6.4e-09 36.3 0.7 4.8 1 1 4 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602204|ref|YP_502382.1| - 1e-35 121.1 18.4 1.3e-07 31.1 1.0 7.0 1 1 6 7 7 7 7 TPR repeat TPR_14 PF13428.6 gi|88602204|ref|YP_502382.1| - 2e-30 102.9 2.9 0.00016 22.2 0.0 7.1 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602204|ref|YP_502382.1| - 2.1e-28 96.6 15.2 6.2e-07 29.4 0.4 7.0 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602204|ref|YP_502382.1| - 3.2e-28 98.0 3.7 4.7e-08 33.4 0.2 5.1 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602204|ref|YP_502382.1| - 2.9e-22 78.8 6.0 7.3e-06 26.2 0.0 5.1 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602204|ref|YP_502382.1| - 4.9e-16 58.2 2.7 0.0058 17.2 0.0 6.2 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602204|ref|YP_502382.1| - 5.6e-16 58.5 0.0 0.00084 19.4 0.0 4.9 1 1 5 6 6 6 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602204|ref|YP_502382.1| - 1.5e-15 57.2 8.0 0.00028 21.1 0.2 3.6 1 1 4 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|88602204|ref|YP_502382.1| - 2.4e-14 52.6 13.8 0.012 15.5 0.1 6.1 7 0 0 7 7 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602204|ref|YP_502382.1| - 2.7e-14 52.0 4.5 0.00022 21.0 0.0 5.7 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602204|ref|YP_502382.1| - 7e-08 32.4 0.7 0.067 13.8 0.0 4.8 6 0 0 6 6 4 2 Tetratricopeptide repeat BTAD PF03704.17 gi|88602204|ref|YP_502382.1| - 2.2e-07 31.4 0.5 0.044 14.2 0.0 3.4 2 1 0 2 2 2 2 Bacterial transcriptional activator domain TPR_15 PF13429.6 gi|88602204|ref|YP_502382.1| - 3.7e-07 29.6 7.0 0.0028 16.9 4.0 3.6 1 1 1 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602204|ref|YP_502382.1| - 1e-06 28.0 1.0 0.00017 20.7 0.0 2.3 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|88602204|ref|YP_502382.1| - 2e-06 27.7 0.6 0.15 12.0 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat PPR PF01535.20 gi|88602204|ref|YP_502382.1| - 1.9e-05 24.6 2.3 6.2 7.3 0.0 5.6 6 0 0 6 6 6 0 PPR repeat TPR_20 PF14561.6 gi|88602204|ref|YP_502382.1| - 0.00019 21.7 0.8 0.57 10.6 0.0 4.1 1 1 5 6 6 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602204|ref|YP_502382.1| - 0.00062 19.8 3.5 2.3 8.4 0.0 4.3 4 1 0 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88602204|ref|YP_502382.1| - 0.00095 19.2 0.1 6.7 6.8 0.0 3.3 1 1 1 3 3 3 0 Putative TPR-like repeat ANAPC5 PF12862.7 gi|88602204|ref|YP_502382.1| - 0.001 19.1 0.1 3.8 7.7 0.0 3.9 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 HrpB1_HrpK PF09613.10 gi|88602204|ref|YP_502382.1| - 0.0063 16.2 0.0 29 4.3 0.0 3.8 1 1 4 5 5 5 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF3856 PF12968.7 gi|88602204|ref|YP_502382.1| - 0.014 15.5 0.3 3 7.9 0.0 4.0 2 1 2 4 4 4 0 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|88602204|ref|YP_502382.1| - 0.035 14.2 5.1 14 5.8 0.1 4.5 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain DUF1510 PF07423.11 gi|88602204|ref|YP_502382.1| - 0.04 14.1 2.6 15 5.8 0.0 3.8 4 1 0 4 4 3 0 Domain of unknown function (DUF1510) TOM20_plant PF06552.12 gi|88602204|ref|YP_502382.1| - 0.058 13.1 2.2 24 4.6 0.0 3.5 2 1 1 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 DUF982 PF06169.12 gi|88602204|ref|YP_502382.1| - 0.095 12.8 2.1 4.1 7.5 0.1 3.6 4 1 1 5 5 4 0 Protein of unknown function (DUF982) DUF5113 PF17140.4 gi|88602204|ref|YP_502382.1| - 0.13 12.0 4.0 8.5 6.2 0.1 4.2 2 2 3 5 5 5 0 Domain of unknown function (DUF5113) TPR_MalT PF17874.1 gi|88602204|ref|YP_502382.1| - 0.14 11.6 0.0 2.6 7.3 0.0 2.4 2 1 0 2 2 2 0 MalT-like TPR region RPN7 PF10602.9 gi|88602204|ref|YP_502382.1| - 0.17 11.6 0.7 42 3.8 0.0 3.1 2 1 1 3 3 3 0 26S proteasome subunit RPN7 Peptidase_M54 PF07998.11 gi|88602205|ref|YP_502383.1| - 7.5e-17 62.0 0.0 8.2e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|88602205|ref|YP_502383.1| - 0.00059 19.7 0.0 0.00075 19.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.13 gi|88602205|ref|YP_502383.1| - 0.037 13.9 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_4 PF13583.6 gi|88602205|ref|YP_502383.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like UPF0146 PF03686.13 gi|88602206|ref|YP_502384.1| - 3.4e-17 62.5 0.0 4.2e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) AAA PF00004.29 gi|88602207|ref|YP_502385.1| - 2.1e-10 41.2 0.0 4.8e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88602207|ref|YP_502385.1| - 8.4e-06 26.1 0.6 0.76 10.0 0.0 3.9 4 1 1 5 5 4 2 AAA domain AAA_16 PF13191.6 gi|88602207|ref|YP_502385.1| - 0.00024 21.5 0.1 0.0012 19.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|88602207|ref|YP_502385.1| - 0.00094 19.0 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|88602207|ref|YP_502385.1| - 0.0028 17.6 0.0 0.0074 16.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_6 PF12774.7 gi|88602207|ref|YP_502385.1| - 0.0035 16.4 0.0 0.25 10.3 0.0 2.2 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region DEAD PF00270.29 gi|88602207|ref|YP_502385.1| - 0.0048 16.7 0.0 1.3 8.8 0.0 2.8 2 1 1 3 3 3 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|88602207|ref|YP_502385.1| - 0.009 15.8 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|88602207|ref|YP_502385.1| - 0.014 15.3 0.0 0.071 13.0 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|88602207|ref|YP_502385.1| - 0.015 15.7 0.1 0.045 14.1 0.1 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_24 PF13479.6 gi|88602207|ref|YP_502385.1| - 0.026 14.3 0.4 0.072 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Vfa1 PF08432.10 gi|88602207|ref|YP_502385.1| - 0.039 14.3 5.8 0.062 13.6 5.8 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 NACHT PF05729.12 gi|88602207|ref|YP_502385.1| - 0.09 12.7 0.0 4.1 7.3 0.0 2.6 3 0 0 3 3 3 0 NACHT domain RNA_helicase PF00910.22 gi|88602207|ref|YP_502385.1| - 0.1 13.0 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase IPT PF01745.16 gi|88602207|ref|YP_502385.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase AAA_25 PF13481.6 gi|88602207|ref|YP_502385.1| - 0.14 11.7 0.3 0.61 9.6 0.3 2.0 1 1 0 1 1 1 0 AAA domain Roughex PF06020.11 gi|88602207|ref|YP_502385.1| - 3.2 6.7 8.6 1.8 7.6 6.2 1.7 2 0 0 2 2 2 0 Drosophila roughex protein AIRS PF00586.24 gi|88602208|ref|YP_502386.1| - 1.5e-18 67.2 0.4 2.8e-18 66.4 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|88602208|ref|YP_502386.1| - 3.1e-11 43.7 0.0 5.8e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain CBFD_NFYB_HMF PF00808.23 gi|88602210|ref|YP_502388.1| - 1.5e-15 57.2 1.2 1.6e-15 57.1 1.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|88602210|ref|YP_502388.1| - 3.1e-11 43.8 0.4 3.3e-11 43.7 0.4 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|88602210|ref|YP_502388.1| - 2.9e-09 37.0 0.1 3.3e-09 36.8 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|88602210|ref|YP_502388.1| - 2.4e-06 27.8 0.1 2.5e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|88602210|ref|YP_502388.1| - 6.8e-05 22.8 0.0 7.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.17 gi|88602210|ref|YP_502388.1| - 0.00012 22.2 1.0 0.00014 22.0 1.0 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|88602210|ref|YP_502388.1| - 0.00086 19.4 0.1 0.00088 19.3 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|88602210|ref|YP_502388.1| - 0.00087 19.7 0.0 0.00095 19.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|88602210|ref|YP_502388.1| - 0.0045 17.0 0.0 0.0061 16.6 0.0 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.6 gi|88602210|ref|YP_502388.1| - 0.0051 15.7 1.2 0.0054 15.6 1.2 1.2 1 1 0 1 1 1 1 AAA domain PCP_red PF08369.10 gi|88602210|ref|YP_502388.1| - 0.17 12.1 3.2 1.3 9.3 0.3 2.3 2 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF1192 PF06698.11 gi|88602210|ref|YP_502388.1| - 0.98 9.5 5.1 2.7 8.1 5.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) IGPD PF00475.18 gi|88602211|ref|YP_502389.1| - 1e-54 184.8 0.1 1.2e-54 184.5 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|88602212|ref|YP_502390.1| - 3.3e-62 210.0 0.0 3.7e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|88602212|ref|YP_502390.1| - 5e-05 22.7 0.5 0.0034 16.7 0.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|88602212|ref|YP_502390.1| - 0.00011 21.4 0.0 0.019 14.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 gi|88602212|ref|YP_502390.1| - 0.0015 17.7 0.1 0.82 8.6 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|88602212|ref|YP_502390.1| - 0.0029 17.0 0.7 0.0038 16.7 0.6 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase TMP-TENI PF02581.17 gi|88602212|ref|YP_502390.1| - 0.018 14.4 0.2 0.055 12.8 0.1 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase PcrB PF01884.17 gi|88602212|ref|YP_502390.1| - 0.023 14.2 0.1 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 PcrB family NanE PF04131.14 gi|88602212|ref|YP_502390.1| - 0.049 12.8 0.1 0.43 9.7 0.0 2.0 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|88602212|ref|YP_502390.1| - 0.053 12.4 0.0 0.097 11.5 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain IGPS PF00218.21 gi|88602212|ref|YP_502390.1| - 0.09 11.9 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|88602212|ref|YP_502390.1| - 0.11 11.7 0.2 0.63 9.2 0.0 2.0 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase HisG PF01634.18 gi|88602213|ref|YP_502391.1| - 1.5e-49 168.0 0.0 3.9e-49 166.7 0.0 1.6 2 0 0 2 2 2 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|88602213|ref|YP_502391.1| - 1.9e-27 95.2 0.1 3.5e-27 94.3 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|88602213|ref|YP_502391.1| - 6.2e-08 32.8 0.0 4.4e-06 26.8 0.0 2.3 1 1 1 2 2 2 1 NMT1/THI5 like DUF881 PF05949.12 gi|88602213|ref|YP_502391.1| - 0.044 13.6 0.1 0.076 12.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) Phosphonate-bd PF12974.7 gi|88602213|ref|YP_502391.1| - 0.091 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein AdoMet_Synthase PF01941.19 gi|88602214|ref|YP_502392.1| - 6.3e-172 571.8 0.1 7.1e-172 571.6 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Methyltransf_2 PF00891.18 gi|88602215|ref|YP_502393.1| - 2.7e-14 53.0 0.0 4.5e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|88602215|ref|YP_502393.1| - 0.00017 21.5 0.0 0.00038 20.4 0.0 1.6 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_16 PF10294.9 gi|88602215|ref|YP_502393.1| - 0.00082 19.2 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|88602215|ref|YP_502393.1| - 0.0015 18.4 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88602215|ref|YP_502393.1| - 0.0083 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.15 gi|88602215|ref|YP_502393.1| - 0.034 13.5 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G NNMT_PNMT_TEMT PF01234.17 gi|88602215|ref|YP_502393.1| - 0.047 12.9 0.0 7.8 5.6 0.0 2.6 3 0 0 3 3 3 0 NNMT/PNMT/TEMT family Methyltransf_25 PF13649.6 gi|88602215|ref|YP_502393.1| - 0.097 13.4 0.0 0.3 11.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|88602215|ref|YP_502393.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HATPase_c PF02518.26 gi|88602216|ref|YP_502394.1| - 1.1e-08 35.6 0.1 2.1e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88602216|ref|YP_502394.1| - 0.00048 19.8 0.1 0.001 18.7 0.1 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_3 PF08447.12 gi|88602216|ref|YP_502394.1| - 0.00078 19.7 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|88602216|ref|YP_502394.1| - 0.0096 15.9 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|88602216|ref|YP_502394.1| - 0.043 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88602216|ref|YP_502394.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain FeThRed_B PF02943.15 gi|88602218|ref|YP_502396.1| - 7.7e-31 106.3 0.0 1.3e-30 105.6 0.0 1.3 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain NRDD PF13597.6 gi|88602218|ref|YP_502396.1| - 0.047 12.5 0.4 0.06 12.1 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.15 gi|88602218|ref|YP_502396.1| - 0.051 13.1 2.8 0.13 11.8 2.8 1.7 1 0 0 1 1 1 0 RecR protein Pyr_excise PF03013.14 gi|88602218|ref|YP_502396.1| - 0.081 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase zf-C4H2 PF10146.9 gi|88602218|ref|YP_502396.1| - 0.17 12.1 0.8 0.16 12.2 0.8 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Rubredoxin PF00301.20 gi|88602218|ref|YP_502396.1| - 0.58 10.2 8.8 2.6 8.1 1.2 2.8 2 0 0 2 2 2 0 Rubredoxin Glutaredoxin PF00462.24 gi|88602219|ref|YP_502397.1| - 1.5e-11 44.3 0.0 2.1e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|88602219|ref|YP_502397.1| - 2.7e-06 27.7 0.0 3.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 gi|88602219|ref|YP_502397.1| - 0.00036 20.5 0.0 0.00052 20.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_2 PF13409.6 gi|88602219|ref|YP_502397.1| - 0.0019 18.5 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|88602219|ref|YP_502397.1| - 0.016 15.5 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain NTP_transf_7 PF07984.12 gi|88602219|ref|YP_502397.1| - 0.035 13.4 0.0 0.04 13.1 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase Thioredoxin_4 PF13462.6 gi|88602219|ref|YP_502397.1| - 0.037 14.2 0.4 3.5 7.8 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin DUF2757 PF10955.8 gi|88602219|ref|YP_502397.1| - 0.04 14.2 0.1 0.054 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) Thioredoxin PF00085.20 gi|88602219|ref|YP_502397.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Hist_deacetyl PF00850.19 gi|88602220|ref|YP_502398.1| - 1.6e-82 277.5 0.0 2.7e-82 276.7 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain Hydantoinase_A PF01968.18 gi|88602221|ref|YP_502399.1| - 7.5e-20 71.4 3.8 1e-17 64.3 0.1 2.9 2 1 1 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|88602221|ref|YP_502399.1| - 9.9e-14 51.4 3.7 2.7e-05 24.0 0.0 3.4 3 0 0 3 3 3 3 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|88602221|ref|YP_502399.1| - 5.6e-05 23.5 2.3 0.19 12.2 0.0 2.7 2 2 0 2 2 2 2 Cell division protein FtsA MutL PF13941.6 gi|88602221|ref|YP_502399.1| - 0.00032 19.4 0.5 0.0034 16.1 0.0 2.2 2 0 0 2 2 2 1 MutL protein BcrAD_BadFG PF01869.20 gi|88602221|ref|YP_502399.1| - 0.0014 18.2 0.8 2.1 7.8 0.1 3.5 3 1 0 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|88602221|ref|YP_502399.1| - 0.011 15.0 1.3 0.83 8.8 0.0 2.7 3 0 0 3 3 3 0 StbA protein Ppx-GppA PF02541.16 gi|88602221|ref|YP_502399.1| - 0.055 12.9 0.2 0.39 10.1 0.0 2.2 2 0 0 2 2 2 0 Ppx/GppA phosphatase family Pan_kinase PF03309.14 gi|88602221|ref|YP_502399.1| - 0.21 11.4 0.9 5.4 6.8 0.1 2.5 2 0 0 2 2 2 0 Type III pantothenate kinase DUF2148 PF09918.9 gi|88602222|ref|YP_502400.1| - 2.5e-32 110.7 0.2 5.1e-32 109.7 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.13 gi|88602222|ref|YP_502400.1| - 1.4e-05 24.7 1.1 3e-05 23.6 1.1 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster GHMP_kinases_N PF00288.26 gi|88602223|ref|YP_502401.1| - 0.0014 18.8 0.1 0.003 17.8 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF4774 PF15999.5 gi|88602223|ref|YP_502401.1| - 0.022 14.6 0.4 0.058 13.2 0.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4774) Sm_multidrug_ex PF06695.11 gi|88602224|ref|YP_502402.1| - 5.3e-16 59.3 5.8 5.3e-16 59.3 5.8 2.9 3 0 0 3 3 3 1 Putative small multi-drug export protein HypA PF01155.19 gi|88602225|ref|YP_502403.1| - 4.8e-23 81.3 0.1 5.3e-23 81.2 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AIRS_C PF02769.22 gi|88602226|ref|YP_502404.1| - 2.1e-28 99.4 1.6 3.6e-28 98.7 1.6 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|88602226|ref|YP_502404.1| - 2.9e-17 63.1 1.5 6.9e-17 61.9 0.3 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RimK PF08443.11 gi|88602226|ref|YP_502404.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DHOase PF12890.7 gi|88602227|ref|YP_502405.1| - 0.0034 17.3 0.2 5.3 7.0 0.2 3.3 2 2 1 3 3 3 2 Dihydro-orotase-like POC3_POC4 PF10448.9 gi|88602227|ref|YP_502405.1| - 0.021 14.8 1.4 0.45 10.5 0.2 2.6 2 1 0 2 2 2 0 20S proteasome chaperone assembly proteins 3 and 4 Radical_SAM PF04055.21 gi|88602228|ref|YP_502406.1| - 4.3e-08 33.7 0.2 7.1e-08 33.0 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|88602228|ref|YP_502406.1| - 0.0045 17.0 0.0 0.078 13.0 0.0 2.7 3 0 0 3 3 3 1 Radical_SAM C-terminal domain Saccharop_dh_N PF04455.12 gi|88602229|ref|YP_502407.1| - 1.1e-36 125.2 0.0 2.6e-36 124.0 0.0 1.7 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region NTP_transf_3 PF12804.7 gi|88602230|ref|YP_502408.1| - 2.4e-19 70.2 0.0 2.8e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88602230|ref|YP_502408.1| - 0.029 14.1 0.0 0.81 9.4 0.0 2.1 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|88602230|ref|YP_502408.1| - 0.051 13.5 0.0 0.096 12.6 0.0 1.4 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.21 gi|88602231|ref|YP_502409.1| - 8.5e-29 100.8 0.0 1.1e-26 93.8 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II RHH_1 PF01402.21 gi|88602232|ref|YP_502410.1| - 5.5e-10 38.8 0.1 6.8e-10 38.5 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|88602232|ref|YP_502410.1| - 0.0036 17.7 0.0 0.004 17.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Tubulin PF00091.25 gi|88602233|ref|YP_502411.1| - 5.9e-38 131.0 0.2 1.1e-37 130.2 0.2 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|88602233|ref|YP_502411.1| - 1.3e-33 115.1 0.2 7.3e-33 112.8 0.2 2.3 1 0 0 1 1 1 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|88602233|ref|YP_502411.1| - 0.11 12.1 0.9 0.17 11.5 0.2 1.7 2 0 0 2 2 2 0 Amino acid kinase family 2-Hacid_dh_C PF02826.19 gi|88602233|ref|YP_502411.1| - 0.12 11.7 1.7 5.4 6.4 0.2 2.8 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|88602233|ref|YP_502411.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 ThiF family Tubulin_2 PF13809.6 gi|88602233|ref|YP_502411.1| - 1.1 8.4 7.1 11 5.1 0.1 2.7 1 1 1 2 2 2 0 Tubulin like TPR_MLP1_2 PF07926.12 gi|88602234|ref|YP_502412.1| - 0.0021 18.1 8.6 0.0021 18.1 8.6 4.4 2 1 1 3 3 3 1 TPR/MLP1/MLP2-like protein Gla PF00594.20 gi|88602234|ref|YP_502412.1| - 0.025 14.8 1.6 0.025 14.8 1.6 3.6 4 1 0 4 4 4 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain F420_oxidored PF03807.17 gi|88602234|ref|YP_502412.1| - 0.19 12.3 0.3 0.19 12.3 0.3 2.8 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Mobilization_B PF17511.2 gi|88602234|ref|YP_502412.1| - 0.37 11.2 13.4 0.044 14.1 2.1 3.1 1 1 2 3 3 3 0 Mobilization protein B LPP PF04728.13 gi|88602234|ref|YP_502412.1| - 0.55 10.7 0.1 0.55 10.7 0.1 4.7 5 1 0 5 5 5 0 Lipoprotein leucine-zipper YtxH PF12732.7 gi|88602234|ref|YP_502412.1| - 0.82 10.2 18.8 11 6.7 0.3 4.3 1 1 1 2 2 2 0 YtxH-like protein SSFA2_C PF14723.6 gi|88602234|ref|YP_502412.1| - 2.6 7.9 12.5 0.79 9.6 3.4 2.5 2 0 0 2 2 2 0 Sperm-specific antigen 2 C-terminus IMPa_helical PF18642.1 gi|88602234|ref|YP_502412.1| - 4.8 7.6 7.9 0.76 10.2 1.1 2.9 2 1 2 4 4 4 0 Immunomodulating metalloprotease helical domain Baculo_PEP_C PF04513.12 gi|88602234|ref|YP_502412.1| - 5.1 7.1 9.2 3.1 7.8 0.6 2.7 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF373 PF04123.13 gi|88602235|ref|YP_502413.1| - 1.3e-113 379.9 7.6 1.5e-113 379.6 7.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) CPBP PF02517.16 gi|88602235|ref|YP_502413.1| - 0.76 10.2 0.1 0.76 10.2 0.1 2.8 2 1 0 2 2 2 0 CPBP intramembrane metalloprotease PKD PF00801.20 gi|88602236|ref|YP_502414.1| - 1.6e-26 91.9 1.2 5.9e-13 48.5 0.1 2.5 2 0 0 2 2 2 2 PKD domain DUF4399 PF14347.6 gi|88602236|ref|YP_502414.1| - 0.0063 16.9 0.0 3.9 7.9 0.0 2.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4399) BiPBP_C PF06832.12 gi|88602236|ref|YP_502414.1| - 0.047 13.7 0.1 0.61 10.2 0.0 2.4 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family DUF4241 PF14025.6 gi|88602236|ref|YP_502414.1| - 0.059 13.7 0.0 2.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4241) MG2 PF01835.19 gi|88602236|ref|YP_502414.1| - 0.077 13.5 0.0 27 5.3 0.0 2.8 3 0 0 3 3 3 0 MG2 domain YtkA PF13115.6 gi|88602236|ref|YP_502414.1| - 0.11 13.1 2.4 11 6.7 0.0 4.0 3 1 0 4 4 4 0 YtkA-like DUF5011 PF16403.5 gi|88602236|ref|YP_502414.1| - 0.35 11.0 1.6 29 4.9 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) OCRE PF17780.1 gi|88602237|ref|YP_502415.1| - 0.056 13.5 6.6 1.7 8.8 0.6 2.7 3 0 0 3 3 3 0 OCRE domain DUF4064 PF13273.6 gi|88602237|ref|YP_502415.1| - 0.49 10.7 3.6 0.91 9.8 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Peptidase_S8 PF00082.22 gi|88602238|ref|YP_502416.1| - 1.4e-13 50.8 0.0 2.3e-12 46.8 0.0 2.1 1 1 0 1 1 1 1 Subtilase family Beta_helix PF13229.6 gi|88602238|ref|YP_502416.1| - 3.7e-12 46.4 11.3 4.8e-11 42.8 11.9 2.3 1 1 0 1 1 1 1 Right handed beta helix region NosD PF05048.13 gi|88602238|ref|YP_502416.1| - 2e-11 43.6 10.6 2.9e-11 43.1 6.8 2.2 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|88602238|ref|YP_502416.1| - 0.027 13.8 8.7 0.13 11.5 8.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1565) DUF1131 PF06572.12 gi|88602238|ref|YP_502416.1| - 0.12 12.1 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) DAAD PF18752.1 gi|88602239|ref|YP_502417.1| - 0.15 11.9 2.3 0.24 11.2 2.3 1.3 1 0 0 1 1 1 0 Dictyosteliid AID/APOBEC-like Deaminase NosD PF05048.13 gi|88602240|ref|YP_502418.1| - 3.9e-57 193.3 38.3 3.9e-46 157.3 21.1 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) TPR_1 PF00515.28 gi|88602240|ref|YP_502418.1| - 2.2e-39 131.7 9.7 7e-07 28.8 0.1 7.6 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602240|ref|YP_502418.1| - 2.3e-37 124.1 5.8 3.9e-06 26.5 0.0 7.6 7 0 0 7 7 7 7 Tetratricopeptide repeat Beta_helix PF13229.6 gi|88602240|ref|YP_502418.1| - 1.9e-35 122.1 77.2 7.1e-15 55.2 17.9 3.0 1 1 2 3 3 3 3 Right handed beta helix region TPR_8 PF13181.6 gi|88602240|ref|YP_502418.1| - 3.1e-29 98.7 3.9 0.00024 21.0 0.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602240|ref|YP_502418.1| - 3.2e-29 100.3 6.9 7.3e-08 32.0 0.0 6.3 1 1 5 6 6 6 5 TPR repeat TPR_19 PF14559.6 gi|88602240|ref|YP_502418.1| - 2.4e-28 98.4 3.2 2e-10 41.0 0.3 4.4 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602240|ref|YP_502418.1| - 5.8e-26 90.9 0.2 3.1e-08 34.1 0.0 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602240|ref|YP_502418.1| - 4.5e-25 86.2 5.5 0.00018 21.6 0.8 5.6 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602240|ref|YP_502418.1| - 6.1e-22 77.7 1.3 4.1e-07 30.2 0.0 5.0 2 2 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602240|ref|YP_502418.1| - 6.7e-22 76.3 0.9 0.00064 20.3 0.0 6.7 1 1 6 7 7 7 5 Tetratricopeptide repeat Peptidase_S8 PF00082.22 gi|88602240|ref|YP_502418.1| - 2.4e-17 63.2 2.2 8.3e-15 54.8 0.0 2.6 3 0 0 3 3 3 2 Subtilase family TPR_7 PF13176.6 gi|88602240|ref|YP_502418.1| - 1e-15 56.5 0.1 0.0036 17.2 0.0 6.5 5 1 1 6 6 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602240|ref|YP_502418.1| - 5.9e-12 45.6 0.1 0.002 18.3 0.0 3.3 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88602240|ref|YP_502418.1| - 1.2e-11 44.5 0.4 2.6e-05 24.3 0.1 3.8 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602240|ref|YP_502418.1| - 1.3e-10 40.8 8.2 0.00052 19.8 0.0 7.0 8 0 0 8 8 7 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602240|ref|YP_502418.1| - 2.7e-09 37.1 3.4 0.042 14.5 0.0 6.5 7 0 0 7 7 6 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602240|ref|YP_502418.1| - 1e-07 31.3 0.2 8.2e-06 25.0 0.0 2.7 1 1 1 3 3 3 1 NMDA receptor-regulated protein 1 MIT PF04212.18 gi|88602240|ref|YP_502418.1| - 2.5e-05 24.3 3.7 0.012 15.6 0.0 4.8 4 2 0 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|88602240|ref|YP_502418.1| - 3.7e-05 23.1 0.6 0.00096 18.4 0.6 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88602240|ref|YP_502418.1| - 0.00018 21.8 0.4 0.36 11.2 0.1 3.3 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602240|ref|YP_502418.1| - 0.0012 19.2 0.0 0.18 12.5 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat ChAPs PF09295.10 gi|88602240|ref|YP_502418.1| - 0.0018 17.3 0.2 0.38 9.7 0.1 2.6 1 1 2 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) Fis1_TPR_C PF14853.6 gi|88602240|ref|YP_502418.1| - 0.0049 16.9 0.1 40 4.4 0.0 4.0 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.7 gi|88602240|ref|YP_502418.1| - 0.0068 16.6 0.0 0.064 13.5 0.0 2.6 3 0 0 3 3 2 1 Tetratrico peptide repeat Coatomer_E PF04733.14 gi|88602240|ref|YP_502418.1| - 0.025 14.0 0.1 8.1 5.8 0.0 3.0 1 1 2 3 3 3 0 Coatomer epsilon subunit BTAD PF03704.17 gi|88602240|ref|YP_502418.1| - 0.037 14.5 0.2 24 5.3 0.0 3.5 3 1 0 3 3 3 0 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|88602240|ref|YP_502418.1| - 0.07 12.8 2.5 14 5.4 0.1 3.9 2 1 2 4 4 4 0 Tetratricopeptide repeat-like domain Alkyl_sulf_dimr PF14863.6 gi|88602240|ref|YP_502418.1| - 0.12 12.8 0.0 16 5.9 0.0 2.8 3 0 0 3 3 2 0 Alkyl sulfatase dimerisation MCPsignal PF00015.21 gi|88602242|ref|YP_502420.1| - 1.9e-38 132.0 21.6 1.9e-38 132.0 21.6 5.0 3 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|88602242|ref|YP_502420.1| - 5.7e-16 58.6 2.9 13 6.2 0.0 16.1 18 0 0 18 18 17 0 HAMP domain HAMP_N3 PF18575.1 gi|88602242|ref|YP_502420.1| - 1.4e-07 30.9 1.6 7.8e-06 25.4 0.0 5.1 6 0 0 6 6 5 1 HAMP N-terminal domain 3 SEP PF08059.13 gi|88602242|ref|YP_502420.1| - 1.1e-06 29.0 0.1 2.2e+02 2.5 0.0 8.0 8 0 0 8 8 8 0 SEP domain AIP3 PF03915.13 gi|88602242|ref|YP_502420.1| - 0.0004 19.6 7.2 0.0004 19.6 7.2 2.1 2 0 0 2 2 2 1 Actin interacting protein 3 UPF0184 PF03670.13 gi|88602242|ref|YP_502420.1| - 0.039 14.3 28.1 23 5.4 0.0 11.0 10 2 1 12 12 11 0 Uncharacterised protein family (UPF0184) Ferritin PF00210.24 gi|88602242|ref|YP_502420.1| - 0.12 12.3 4.0 0.42 10.5 0.5 4.0 3 1 0 3 3 3 0 Ferritin-like domain Syntaxin-6_N PF09177.11 gi|88602242|ref|YP_502420.1| - 0.25 11.9 12.0 8.5 7.0 0.1 6.5 5 2 1 6 6 4 0 Syntaxin 6, N-terminal ATG16 PF08614.11 gi|88602242|ref|YP_502420.1| - 0.39 10.9 12.4 0.35 11.1 2.7 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) SpoIISA_toxin PF14171.6 gi|88602242|ref|YP_502420.1| - 0.41 10.3 10.3 0.89 9.2 0.0 5.9 5 1 3 9 9 9 0 Toxin SpoIISA, type II toxin-antitoxin system TssO PF17561.2 gi|88602242|ref|YP_502420.1| - 0.42 10.7 9.1 1.9 8.6 0.3 4.2 3 0 0 3 3 2 0 Type VI secretion system, TssO IFT57 PF10498.9 gi|88602242|ref|YP_502420.1| - 0.55 9.1 10.5 0.22 10.5 0.4 3.1 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Occludin_ELL PF07303.13 gi|88602242|ref|YP_502420.1| - 0.56 11.0 4.2 96 3.8 0.1 5.3 4 1 0 5 5 5 0 Occludin homology domain HisKA PF00512.25 gi|88602242|ref|YP_502420.1| - 1.4 9.0 14.1 2.6 8.2 0.2 6.2 7 1 1 8 8 8 0 His Kinase A (phospho-acceptor) domain DUF16 PF01519.16 gi|88602242|ref|YP_502420.1| - 1.8 9.1 8.4 2.9 8.4 0.1 5.3 5 0 0 5 5 4 0 Protein of unknown function DUF16 Laminin_II PF06009.12 gi|88602242|ref|YP_502420.1| - 2.4 8.2 31.9 1.1 9.2 4.2 6.1 2 1 2 5 5 5 0 Laminin Domain II GAS PF13851.6 gi|88602242|ref|YP_502420.1| - 2.9 7.2 7.0 2.2 7.6 0.9 3.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|88602242|ref|YP_502420.1| - 3.6 7.8 24.6 0.26 11.5 1.8 6.2 7 1 1 8 8 4 0 Fibrinogen alpha/beta chain family DNA_repr_REX1B PF14966.6 gi|88602242|ref|YP_502420.1| - 3.8 8.2 5.4 33 5.2 0.0 4.6 4 1 1 5 5 4 0 DNA repair REX1-B DUF4665 PF15679.5 gi|88602242|ref|YP_502420.1| - 4.9 7.8 5.3 5.8 7.6 0.5 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4665) Fzo_mitofusin PF04799.13 gi|88602242|ref|YP_502420.1| - 5.2 6.6 6.6 14 5.2 0.0 3.7 3 1 0 3 3 3 0 fzo-like conserved region EF-G-binding_N PF07299.11 gi|88602242|ref|YP_502420.1| - 6.7 7.3 17.3 1.9e+02 2.7 0.1 7.9 9 0 0 9 9 7 0 Elongation factor G-binding protein, N-terminal V_ATPase_I PF01496.19 gi|88602242|ref|YP_502420.1| - 8.7 4.1 8.6 24 2.7 8.6 1.7 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CheB_methylest PF01339.17 gi|88602243|ref|YP_502421.1| - 3.3e-47 160.4 0.0 3.8e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|88602244|ref|YP_502422.1| - 9.3e-22 77.3 0.0 1.1e-21 77.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_23 PF13489.6 gi|88602245|ref|YP_502423.1| - 1.7e-05 24.7 0.0 2.7e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|88602245|ref|YP_502423.1| - 0.00084 18.7 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|88602245|ref|YP_502423.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602245|ref|YP_502423.1| - 0.0011 19.6 0.0 0.0019 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TPR_1 PF00515.28 gi|88602246|ref|YP_502424.1| - 4e-81 263.8 36.0 2e-11 43.2 0.1 12.4 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602246|ref|YP_502424.1| - 9.5e-71 228.3 27.4 2e-08 33.7 0.0 12.6 13 0 0 13 13 12 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602246|ref|YP_502424.1| - 7.8e-52 169.2 22.6 7.7e-06 25.7 0.1 13.2 13 0 0 13 13 13 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602246|ref|YP_502424.1| - 1.7e-43 146.0 14.2 1.9e-07 30.6 0.0 11.0 4 3 8 12 12 11 9 TPR repeat TPR_17 PF13431.6 gi|88602246|ref|YP_502424.1| - 4.4e-39 130.1 15.4 1.2e-05 25.3 0.2 12.3 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602246|ref|YP_502424.1| - 6.7e-36 122.4 17.3 2.9e-09 37.1 0.1 9.7 4 3 4 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602246|ref|YP_502424.1| - 1.4e-35 121.7 0.7 8.2e-08 32.8 0.0 8.7 2 2 9 11 11 11 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602246|ref|YP_502424.1| - 1.7e-34 117.8 0.4 8.2e-05 22.7 0.0 8.1 3 2 6 9 9 9 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602246|ref|YP_502424.1| - 1.6e-32 109.4 4.2 0.043 14.6 0.0 11.4 2 2 9 11 11 11 8 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602246|ref|YP_502424.1| - 4e-32 110.5 7.9 7.1e-05 23.2 0.2 7.6 3 2 3 7 7 7 7 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602246|ref|YP_502424.1| - 4.4e-29 100.5 28.5 4.9e-07 29.9 1.0 7.0 2 2 5 7 7 7 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88602246|ref|YP_502424.1| - 8.7e-22 76.3 9.8 0.17 12.6 0.0 11.1 11 0 0 11 11 11 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602246|ref|YP_502424.1| - 1.6e-18 65.2 6.8 0.054 13.5 0.0 10.4 11 0 0 11 11 11 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602246|ref|YP_502424.1| - 4.5e-12 45.7 11.9 0.00075 18.5 0.1 5.7 1 1 3 6 6 6 3 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|88602246|ref|YP_502424.1| - 3.4e-11 43.2 12.7 0.0017 18.3 0.0 6.0 1 1 5 6 6 6 2 Putative TPR-like repeat TPR_10 PF13374.6 gi|88602246|ref|YP_502424.1| - 3.2e-08 33.2 15.0 1.1 9.2 0.1 9.4 11 0 0 11 11 9 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88602246|ref|YP_502424.1| - 4e-07 30.2 2.9 1.1 9.4 0.0 6.2 3 1 1 5 5 4 1 Domain of Unknown Function (DUF3856) PknG_TPR PF16918.5 gi|88602246|ref|YP_502424.1| - 4.5e-07 28.9 0.4 0.11 11.2 0.0 3.8 1 1 2 3 3 3 2 Protein kinase G tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602246|ref|YP_502424.1| - 4.9e-07 29.7 16.5 0.05 13.7 0.1 8.8 7 1 3 10 10 9 1 Fis1 C-terminal tetratricopeptide repeat FAT PF02259.23 gi|88602246|ref|YP_502424.1| - 5.9e-07 29.0 6.4 7.3e-07 28.7 3.7 2.9 2 1 0 2 2 2 1 FAT domain Coatomer_E PF04733.14 gi|88602246|ref|YP_502424.1| - 1.6e-06 27.8 0.6 1.3e-05 24.8 0.2 2.5 1 1 0 2 2 2 1 Coatomer epsilon subunit TPR_20 PF14561.6 gi|88602246|ref|YP_502424.1| - 3.5e-06 27.2 8.4 0.0056 17.0 0.4 5.5 5 1 1 6 6 5 1 Tetratricopeptide repeat SHOCT PF09851.9 gi|88602246|ref|YP_502424.1| - 1.1e-05 25.0 0.0 4e-05 23.2 0.0 2.1 1 0 0 1 1 1 1 Short C-terminal domain TPR_15 PF13429.6 gi|88602246|ref|YP_502424.1| - 1.8e-05 24.1 6.4 0.017 14.4 1.8 4.9 3 2 1 4 4 4 2 Tetratricopeptide repeat DUF4919 PF16266.5 gi|88602246|ref|YP_502424.1| - 4.2e-05 23.6 0.7 0.021 14.8 0.0 3.7 4 0 0 4 4 3 1 Domain of unknown function (DUF4919) BTAD PF03704.17 gi|88602246|ref|YP_502424.1| - 5.2e-05 23.7 2.0 0.17 12.3 0.0 4.1 1 1 2 3 3 3 1 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|88602246|ref|YP_502424.1| - 7.3e-05 22.6 0.8 0.17 11.6 0.0 3.7 3 1 0 4 4 3 1 Tetratricopeptide repeat-like domain DUF3808 PF10300.9 gi|88602246|ref|YP_502424.1| - 0.00055 18.8 7.1 0.014 14.2 1.1 3.6 3 2 0 3 3 3 1 Protein of unknown function (DUF3808) ChAPs PF09295.10 gi|88602246|ref|YP_502424.1| - 0.0066 15.5 1.7 11 4.9 0.3 3.9 1 1 2 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) HrpB1_HrpK PF09613.10 gi|88602246|ref|YP_502424.1| - 0.023 14.3 0.0 6.4 6.4 0.0 3.8 2 2 1 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) ANAPC5 PF12862.7 gi|88602246|ref|YP_502424.1| - 0.056 13.5 2.1 8.8 6.5 0.2 4.3 4 1 1 5 5 4 0 Anaphase-promoting complex subunit 5 TPR_3 PF07720.12 gi|88602246|ref|YP_502424.1| - 0.072 13.1 23.9 9.9 6.3 0.0 8.2 8 1 0 8 8 8 0 Tetratricopeptide repeat DDT PF02791.17 gi|88602246|ref|YP_502424.1| - 0.079 13.3 0.1 3.8 7.9 0.0 3.3 4 0 0 4 4 3 0 DDT domain MIT PF04212.18 gi|88602246|ref|YP_502424.1| - 0.098 12.7 25.3 5.5 7.1 1.3 8.8 8 3 1 9 9 8 0 MIT (microtubule interacting and transport) domain RPN7 PF10602.9 gi|88602246|ref|YP_502424.1| - 0.63 9.7 8.7 9.1 6.0 0.0 5.4 2 2 3 6 6 6 0 26S proteasome subunit RPN7 RIG-I_C PF18119.1 gi|88602246|ref|YP_502424.1| - 0.69 9.9 7.1 13 5.8 0.3 4.8 3 1 2 5 5 5 0 RIG-I receptor C-terminal domain PPTA PF01239.22 gi|88602246|ref|YP_502424.1| - 2.2 8.1 8.2 47 3.9 0.1 4.6 5 0 0 5 5 4 0 Protein prenyltransferase alpha subunit repeat AdoHcyase PF05221.17 gi|88602247|ref|YP_502425.1| - 5.5e-47 160.4 0.0 3.5e-23 82.2 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|88602247|ref|YP_502425.1| - 3e-45 154.2 0.8 3e-45 154.2 0.8 2.2 3 0 0 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|88602247|ref|YP_502425.1| - 1e-08 34.7 0.3 2e-08 33.8 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|88602247|ref|YP_502425.1| - 3.9e-07 29.8 0.4 9.3e-07 28.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|88602247|ref|YP_502425.1| - 0.001 19.3 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain Urocanase PF01175.18 gi|88602247|ref|YP_502425.1| - 0.0056 16.3 0.4 0.011 15.4 0.4 1.4 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Pyr_redox_2 PF07992.14 gi|88602247|ref|YP_502425.1| - 0.0096 15.2 0.2 0.015 14.6 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|88602247|ref|YP_502425.1| - 0.023 15.3 0.1 0.049 14.2 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|88602247|ref|YP_502425.1| - 0.075 12.3 1.2 0.19 11.0 1.2 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain His_biosynth PF00977.21 gi|88602248|ref|YP_502426.1| - 2.5e-88 295.4 0.1 2.8e-88 295.2 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|88602248|ref|YP_502426.1| - 5.3e-05 22.8 3.1 0.18 11.1 0.3 2.7 2 1 1 3 3 3 2 Nitronate monooxygenase Dus PF01207.17 gi|88602248|ref|YP_502426.1| - 8.8e-05 21.7 0.1 0.0015 17.7 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|88602248|ref|YP_502426.1| - 0.00016 21.2 0.1 0.0022 17.4 0.0 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|88602248|ref|YP_502426.1| - 0.00052 19.4 0.8 0.05 12.9 0.1 2.3 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|88602248|ref|YP_502426.1| - 0.00073 18.9 0.3 0.69 9.2 0.0 2.4 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|88602248|ref|YP_502426.1| - 0.0027 17.0 0.8 0.28 10.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|88602248|ref|YP_502426.1| - 0.0067 15.5 0.7 0.32 9.9 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|88602248|ref|YP_502426.1| - 0.094 11.8 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase Nitroreductase PF00881.24 gi|88602249|ref|YP_502427.1| - 9.6e-20 71.3 0.0 1.1e-19 71.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|88602249|ref|YP_502427.1| - 0.037 13.6 0.0 0.5 9.9 0.0 2.0 2 0 0 2 2 2 0 Putative TM nitroreductase DUF5594 PF18057.1 gi|88602249|ref|YP_502427.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5594) AAA_31 PF13614.6 gi|88602250|ref|YP_502428.1| - 2.3e-29 102.6 0.1 3.4e-29 102.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|88602250|ref|YP_502428.1| - 1.5e-05 25.1 0.0 2.2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2070 PF09843.9 gi|88602250|ref|YP_502428.1| - 0.016 13.6 0.1 0.02 13.2 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CBP_BcsQ PF06564.12 gi|88602250|ref|YP_502428.1| - 0.016 14.7 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ CheW PF01584.19 gi|88602251|ref|YP_502429.1| - 1.4e-23 83.1 1.7 2.9e-23 82.0 1.7 1.6 1 0 0 1 1 1 1 CheW-like domain PAS_9 PF13426.7 gi|88602251|ref|YP_502429.1| - 2.3e-10 40.7 0.4 0.0025 18.0 0.0 5.0 5 0 0 5 5 5 2 PAS domain PAS_8 PF13188.7 gi|88602251|ref|YP_502429.1| - 4.3e-07 29.8 0.0 0.0088 16.1 0.0 4.1 4 0 0 4 4 4 1 PAS domain PAS_4 PF08448.10 gi|88602251|ref|YP_502429.1| - 0.00049 20.3 0.0 2.7 8.3 0.0 3.8 4 0 0 4 4 3 1 PAS fold PAS PF00989.25 gi|88602251|ref|YP_502429.1| - 0.0018 18.2 0.0 0.49 10.4 0.0 3.7 3 0 0 3 3 3 1 PAS fold FlxA PF14282.6 gi|88602251|ref|YP_502429.1| - 0.013 15.5 6.5 0.013 15.5 6.5 2.1 2 0 0 2 2 1 0 FlxA-like protein DUF5616 PF18481.1 gi|88602251|ref|YP_502429.1| - 0.014 15.8 0.1 0.035 14.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5616) DUF4201 PF13870.6 gi|88602251|ref|YP_502429.1| - 0.054 13.2 4.0 0.88 9.3 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) CCDC144C PF14915.6 gi|88602251|ref|YP_502429.1| - 0.06 12.5 4.9 0.56 9.3 0.3 2.3 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Filament PF00038.21 gi|88602251|ref|YP_502429.1| - 0.066 12.8 5.5 1.2 8.6 0.3 2.3 2 0 0 2 2 2 0 Intermediate filament protein DUF4140 PF13600.6 gi|88602251|ref|YP_502429.1| - 0.081 13.4 2.4 2.2 8.8 0.1 2.7 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF5320 PF17253.2 gi|88602251|ref|YP_502429.1| - 0.094 13.8 0.2 0.094 13.8 0.2 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5320) LPP PF04728.13 gi|88602251|ref|YP_502429.1| - 1.1 9.7 5.7 9.8 6.7 1.0 3.1 3 0 0 3 3 2 0 Lipoprotein leucine-zipper HIP1_clath_bdg PF16515.5 gi|88602251|ref|YP_502429.1| - 1.2 9.8 8.4 1.7 9.3 1.7 2.6 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 GrpE PF01025.19 gi|88602251|ref|YP_502429.1| - 1.5 8.5 7.4 10 5.8 1.2 2.6 2 0 0 2 2 2 0 GrpE APG17 PF04108.12 gi|88602251|ref|YP_502429.1| - 1.6 7.8 11.4 1.8 7.6 1.3 3.0 2 1 1 3 3 3 0 Autophagy protein Apg17 Golgin_A5 PF09787.9 gi|88602251|ref|YP_502429.1| - 1.6 8.1 9.0 3.2 7.1 0.7 2.2 2 0 0 2 2 2 0 Golgin subfamily A member 5 YkyA PF10368.9 gi|88602251|ref|YP_502429.1| - 1.9 8.1 10.9 0.47 10.1 1.6 2.8 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Spc24 PF08286.11 gi|88602251|ref|YP_502429.1| - 2.3 8.5 5.8 1.2 9.4 0.5 2.6 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 TolA_bind_tri PF16331.5 gi|88602251|ref|YP_502429.1| - 5.2 7.2 13.1 7.7 6.7 2.3 2.8 2 0 0 2 2 2 0 TolA binding protein trimerisation Prefoldin_2 PF01920.20 gi|88602251|ref|YP_502429.1| - 6.9 6.7 10.6 2.8 8.0 1.2 2.8 2 0 0 2 2 2 0 Prefoldin subunit CheR PF01739.18 gi|88602252|ref|YP_502430.1| - 1.2e-55 188.1 0.0 1.7e-55 187.5 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|88602252|ref|YP_502430.1| - 1.3e-11 44.1 0.9 3.8e-11 42.5 0.9 1.8 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 gi|88602252|ref|YP_502430.1| - 0.022 15.4 0.1 0.48 11.2 0.1 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602252|ref|YP_502430.1| - 0.029 15.1 0.2 0.091 13.5 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602252|ref|YP_502430.1| - 0.083 12.7 0.0 1.6 8.5 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain NTP_transf_3 PF12804.7 gi|88602254|ref|YP_502432.1| - 5.5e-30 104.8 0.0 6.7e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|88602254|ref|YP_502432.1| - 0.061 12.9 0.0 0.11 12.0 0.0 1.5 1 1 0 1 1 1 0 Nucleotidyl transferase RE_HaeII PF09554.10 gi|88602254|ref|YP_502432.1| - 0.084 12.1 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 HaeII restriction endonuclease DNA_binding_1 PF01035.20 gi|88602255|ref|YP_502433.1| - 2.7e-24 85.1 0.0 4.9e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.16 gi|88602255|ref|YP_502433.1| - 0.041 13.4 0.5 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Helicase_C_2 PF13307.6 gi|88602256|ref|YP_502434.1| - 9.1e-39 133.3 0.0 1.8e-38 132.4 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|88602256|ref|YP_502434.1| - 1.3e-14 54.2 1.5 6.9e-12 45.3 0.3 2.8 3 0 0 3 3 3 2 DEAD_2 HBB PF06777.11 gi|88602256|ref|YP_502434.1| - 1.9e-11 44.0 0.0 4e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Helical and beta-bridge domain ResIII PF04851.15 gi|88602256|ref|YP_502434.1| - 0.00095 19.2 0.0 0.23 11.4 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|88602256|ref|YP_502434.1| - 0.0014 18.5 0.0 0.012 15.4 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|88602256|ref|YP_502434.1| - 0.0015 18.9 2.5 0.0044 17.4 0.1 2.7 3 1 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|88602256|ref|YP_502434.1| - 0.002 18.4 2.2 0.29 11.4 0.0 2.9 3 0 0 3 3 3 1 AAA domain ORF6C PF10552.9 gi|88602256|ref|YP_502434.1| - 0.18 11.9 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 ORF6C domain Hemerythrin PF01814.23 gi|88602257|ref|YP_502435.1| - 2.2e-12 47.7 0.1 2.6e-12 47.5 0.1 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain NosD PF05048.13 gi|88602258|ref|YP_502436.1| - 1.5e-56 191.4 78.0 4e-37 127.8 21.3 4.5 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|88602258|ref|YP_502436.1| - 2.3e-42 144.5 108.3 1.8e-14 53.9 14.1 5.0 2 2 3 5 5 5 5 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|88602258|ref|YP_502436.1| - 4e-08 33.4 43.3 0.12 12.2 3.1 5.8 2 2 4 6 6 6 6 Pectate lyase superfamily protein DUF4390 PF14334.6 gi|88602258|ref|YP_502436.1| - 0.014 14.9 0.3 0.27 10.7 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4390) Dockerin_1 PF00404.18 gi|88602258|ref|YP_502436.1| - 0.048 13.9 2.2 0.47 10.7 2.3 2.7 1 1 1 2 2 2 0 Dockerin type I domain AA_permease PF00324.21 gi|88602259|ref|YP_502437.1| - 1.6e-70 238.1 39.8 2.1e-70 237.7 39.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|88602259|ref|YP_502437.1| - 1.9e-30 106.1 43.4 2.2e-30 105.8 43.4 1.0 1 0 0 1 1 1 1 Amino acid permease CorA PF01544.18 gi|88602260|ref|YP_502438.1| - 8.2e-62 209.1 3.5 9.5e-62 208.9 3.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein CDC24 PF06395.11 gi|88602260|ref|YP_502438.1| - 0.065 13.5 0.5 0.31 11.3 0.1 2.1 2 0 0 2 2 2 0 CDC24 Calponin PKD PF00801.20 gi|88602261|ref|YP_502439.1| - 3.8e-142 462.3 64.2 5.5e-11 42.2 1.6 14.3 14 0 0 14 14 14 14 PKD domain MG2 PF01835.19 gi|88602261|ref|YP_502439.1| - 4.8e-18 65.4 13.9 1.5 9.3 0.0 12.2 12 2 2 14 14 14 6 MG2 domain PKD_3 PF16820.5 gi|88602261|ref|YP_502439.1| - 2.6e-07 30.3 28.2 0.072 12.9 0.0 11.3 13 0 0 13 13 13 3 PKD-like domain DUF4685 PF15737.5 gi|88602261|ref|YP_502439.1| - 0.17 12.3 0.0 27 5.2 0.0 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4685) Rib PF08428.10 gi|88602261|ref|YP_502439.1| - 3.8 7.6 9.2 13 5.8 0.2 4.1 3 0 0 3 3 3 0 Rib/alpha-like repeat Cep57_MT_bd PF06657.13 gi|88602262|ref|YP_502440.1| - 0.065 13.7 1.2 0.1 13.0 1.2 1.3 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 Pullulanase_Ins PF18494.1 gi|88602262|ref|YP_502440.1| - 0.13 12.7 0.0 8.5 6.9 0.1 2.2 1 1 1 2 2 2 0 Pullulanase Ins domain Cpn60_TCP1 PF00118.24 gi|88602263|ref|YP_502441.1| - 4.8e-156 520.2 23.9 5.4e-156 520.0 23.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|88602263|ref|YP_502441.1| - 0.065 13.6 0.2 0.35 11.2 0.2 2.3 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Pribosyltran PF00156.27 gi|88602264|ref|YP_502442.1| - 4.8e-14 52.2 0.1 7.6e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|88602264|ref|YP_502442.1| - 0.003 17.1 0.0 0.0057 16.2 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|88602264|ref|YP_502442.1| - 0.015 14.7 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|88602264|ref|YP_502442.1| - 0.023 14.8 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 gi|88602264|ref|YP_502442.1| - 0.032 14.3 0.0 0.076 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|88602264|ref|YP_502442.1| - 0.061 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PDZ_6 PF17820.1 gi|88602264|ref|YP_502442.1| - 0.062 13.2 0.0 0.98 9.3 0.0 2.6 2 0 0 2 2 2 0 PDZ domain GerE PF00196.19 gi|88602264|ref|YP_502442.1| - 0.099 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family IMPa_N_2 PF18650.1 gi|88602264|ref|YP_502442.1| - 0.1 11.9 0.0 0.86 8.8 0.0 2.0 2 0 0 2 2 2 0 Immunomodulating metalloprotease N-terminal domain PIN_6 PF17146.4 gi|88602265|ref|YP_502443.1| - 1.1e-17 64.3 0.1 1.5e-17 63.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|88602265|ref|YP_502443.1| - 0.00049 20.1 0.3 0.0009 19.3 0.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain PIN_5 PF08745.11 gi|88602265|ref|YP_502443.1| - 0.002 17.6 0.1 0.0042 16.5 0.0 1.7 1 1 1 2 2 2 1 PINc domain ribonuclease zf-ribbon_3 PF13248.6 gi|88602265|ref|YP_502443.1| - 0.012 15.0 1.5 0.021 14.2 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|88602265|ref|YP_502443.1| - 0.022 14.9 0.2 0.04 14.1 0.2 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|88602265|ref|YP_502443.1| - 0.18 11.3 0.6 0.47 10.0 0.6 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Pribosyltran_N PF13793.6 gi|88602266|ref|YP_502444.1| - 1.1e-19 70.5 0.0 1.2e-17 63.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|88602266|ref|YP_502444.1| - 2e-10 40.4 0.0 8.5e-10 38.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|88602266|ref|YP_502444.1| - 8.4e-07 29.2 0.1 1.7e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|88602266|ref|YP_502444.1| - 0.006 16.1 0.1 0.012 15.1 0.1 1.6 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|88602266|ref|YP_502444.1| - 0.045 13.3 0.0 2.6 7.5 0.1 2.2 1 1 1 2 2 2 0 Phosphoribosyl transferase Lon_C PF05362.13 gi|88602267|ref|YP_502445.1| - 1.9e-33 115.7 3.6 4e-33 114.7 3.6 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|88602267|ref|YP_502445.1| - 2.1e-28 99.4 0.0 7.6e-21 74.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|88602267|ref|YP_502445.1| - 7.7e-18 64.6 0.2 4.2e-11 42.6 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|88602267|ref|YP_502445.1| - 1e-14 54.6 0.9 4.4e-08 33.0 0.0 2.8 2 1 1 3 3 3 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|88602267|ref|YP_502445.1| - 8e-09 35.6 0.0 0.00064 19.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|88602267|ref|YP_502445.1| - 3.2e-08 33.4 0.2 6.3e-08 32.5 0.2 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|88602267|ref|YP_502445.1| - 6.5e-08 32.0 0.0 0.0023 17.1 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|88602267|ref|YP_502445.1| - 7.7e-07 29.6 0.0 0.0081 16.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|88602267|ref|YP_502445.1| - 1.1e-05 25.2 0.1 0.03 14.1 0.1 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|88602267|ref|YP_502445.1| - 1.3e-05 25.1 0.0 0.066 13.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|88602267|ref|YP_502445.1| - 8.1e-05 23.0 0.3 0.00035 20.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|88602267|ref|YP_502445.1| - 0.00016 21.9 0.0 0.0031 17.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|88602267|ref|YP_502445.1| - 0.00033 20.2 0.0 0.0013 18.3 0.0 2.0 3 0 0 3 3 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|88602267|ref|YP_502445.1| - 0.002 17.9 0.0 0.022 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|88602267|ref|YP_502445.1| - 0.0028 17.8 0.0 3 8.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|88602267|ref|YP_502445.1| - 0.0028 17.1 0.0 0.0052 16.3 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein TIP49 PF06068.13 gi|88602267|ref|YP_502445.1| - 0.003 16.8 0.1 0.05 12.8 0.1 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain Parvo_NS1 PF01057.17 gi|88602267|ref|YP_502445.1| - 0.0089 15.1 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 gi|88602267|ref|YP_502445.1| - 0.018 15.4 0.0 0.07 13.5 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|88602267|ref|YP_502445.1| - 0.021 15.0 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain MgtC PF02308.16 gi|88602267|ref|YP_502445.1| - 0.022 15.1 0.0 0.06 13.7 0.0 1.8 1 0 0 1 1 1 0 MgtC family ABC_tran PF00005.27 gi|88602267|ref|YP_502445.1| - 0.031 14.8 0.0 0.09 13.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.17 gi|88602267|ref|YP_502445.1| - 0.039 13.7 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_2 PF07724.14 gi|88602267|ref|YP_502445.1| - 0.041 14.0 0.2 8.7 6.4 0.1 2.9 2 1 0 3 3 3 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|88602267|ref|YP_502445.1| - 0.045 14.3 0.0 0.12 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|88602267|ref|YP_502445.1| - 0.075 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|88602267|ref|YP_502445.1| - 0.077 13.2 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|88602267|ref|YP_502445.1| - 0.093 11.6 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|88602267|ref|YP_502445.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.9 gi|88602267|ref|YP_502445.1| - 0.21 10.8 0.0 0.33 10.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PmbA_TldD PF01523.16 gi|88602268|ref|YP_502446.1| - 1.1e-53 183.0 0.0 1.3e-53 182.7 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|88602269|ref|YP_502447.1| - 3.9e-52 177.8 0.0 5.2e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DHquinase_I PF01487.15 gi|88602270|ref|YP_502448.1| - 1.1e-31 110.8 0.0 1.5e-31 110.4 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase TipAS PF07739.13 gi|88602270|ref|YP_502448.1| - 0.14 12.7 0.1 0.23 12.0 0.1 1.3 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain MJ1316 PF04457.12 gi|88602271|ref|YP_502449.1| - 1e-20 74.3 1.1 1.1e-20 74.1 1.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Big_3_5 PF16640.5 gi|88602272|ref|YP_502450.1| - 4.1e-06 26.9 0.2 2.3e-05 24.5 0.1 2.2 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) CarboxypepD_reg PF13620.6 gi|88602272|ref|YP_502450.1| - 0.00022 21.5 0.3 0.0086 16.3 0.0 2.4 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|88602272|ref|YP_502450.1| - 0.012 15.6 0.0 0.14 12.2 0.0 2.2 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 1) E1-E2_ATPase PF00122.20 gi|88602273|ref|YP_502451.1| - 2.3e-55 186.9 2.2 3.4e-55 186.4 0.1 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|88602273|ref|YP_502451.1| - 1.8e-42 146.0 0.2 2.7e-42 145.4 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|88602273|ref|YP_502451.1| - 1.3e-32 112.0 1.3 1.3e-15 57.6 0.1 2.5 2 0 0 2 2 2 2 Heavy-metal-associated domain YHS PF04945.13 gi|88602273|ref|YP_502451.1| - 1.2e-18 66.9 3.7 2.5e-18 65.9 3.7 1.5 1 0 0 1 1 1 1 YHS domain Hydrolase_3 PF08282.12 gi|88602273|ref|YP_502451.1| - 0.00012 21.9 0.8 0.00035 20.4 0.3 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88602273|ref|YP_502451.1| - 0.011 16.2 0.0 0.064 13.6 0.0 2.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.6 gi|88602273|ref|YP_502451.1| - 0.13 12.4 0.2 10 6.3 0.0 3.1 3 0 0 3 3 3 0 Papain fold toxin 2 Arc_trans_TRASH PF08394.10 gi|88602273|ref|YP_502451.1| - 0.16 12.3 0.8 0.6 10.5 0.8 2.1 1 0 0 1 1 1 0 Archaeal TRASH domain CN_hydrolase PF00795.22 gi|88602274|ref|YP_502452.1| - 1.6e-37 129.3 0.0 1.9e-37 129.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase CarboxypepD_reg PF13620.6 gi|88602275|ref|YP_502453.1| - 5.1e-07 29.9 0.5 0.0072 16.6 0.0 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|88602275|ref|YP_502453.1| - 1e-05 25.4 1.1 0.069 13.2 0.1 3.5 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|88602275|ref|YP_502453.1| - 0.0018 18.4 0.0 0.64 10.2 0.0 2.3 2 0 0 2 2 2 2 Macroglobulin domain MG4 Dioxygenase_C PF00775.21 gi|88602275|ref|YP_502453.1| - 0.013 14.9 0.1 1.3 8.5 0.0 2.8 2 2 0 2 2 2 0 Dioxygenase phage_tail_N PF08400.10 gi|88602275|ref|YP_502453.1| - 0.014 15.4 0.0 5.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Prophage tail fibre N-terminal Pollen_Ole_e_I PF01190.17 gi|88602275|ref|YP_502453.1| - 0.017 15.5 0.0 0.36 11.2 0.0 2.2 2 0 0 2 2 2 0 Pollen proteins Ole e I like CooC_C PF15976.5 gi|88602275|ref|YP_502453.1| - 0.11 12.6 0.7 8.7 6.5 0.3 3.0 2 1 0 2 2 2 0 CS1-pili formation C-terminal MCM PF00493.23 gi|88602276|ref|YP_502454.1| - 2.8e-96 320.9 0.0 4.1e-96 320.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|88602276|ref|YP_502454.1| - 1.8e-30 105.4 0.1 3.2e-30 104.6 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|88602276|ref|YP_502454.1| - 6e-26 90.7 1.6 6e-26 90.7 1.6 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|88602276|ref|YP_502454.1| - 1.1e-07 31.5 0.0 7.9e-06 25.4 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|88602276|ref|YP_502454.1| - 7.9e-06 25.9 0.0 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|88602276|ref|YP_502454.1| - 2.8e-05 24.6 0.1 0.00021 21.8 0.1 2.3 2 0 0 2 2 2 1 MCM N-terminal domain AAA_3 PF07726.11 gi|88602276|ref|YP_502454.1| - 0.00013 21.8 0.0 0.00033 20.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|88602276|ref|YP_502454.1| - 0.069 12.9 0.0 0.33 10.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|88602276|ref|YP_502454.1| - 0.15 12.4 1.9 1.7 9.0 0.1 3.1 2 2 0 2 2 2 0 AAA ATPase domain Response_reg PF00072.24 gi|88602277|ref|YP_502455.1| - 2e-27 95.6 0.0 4.2e-27 94.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602277|ref|YP_502455.1| - 6.4e-10 39.5 0.1 1.6e-09 38.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88602277|ref|YP_502455.1| - 0.00037 20.4 0.1 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|88602277|ref|YP_502455.1| - 0.032 14.2 1.0 0.064 13.2 0.1 2.0 2 0 0 2 2 2 0 GHKL domain DUF4758 PF15950.5 gi|88602277|ref|YP_502455.1| - 0.052 13.9 0.9 0.099 13.0 0.9 1.4 1 0 0 1 1 1 0 Putative sperm flagellar membrane protein putAbiC PF16872.5 gi|88602277|ref|YP_502455.1| - 0.21 12.3 2.5 0.44 11.3 0.2 2.4 1 1 1 2 2 2 0 Putative phage abortive infection protein Response_reg PF00072.24 gi|88602278|ref|YP_502456.1| - 1.4e-26 92.9 0.0 4.7e-26 91.2 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602278|ref|YP_502456.1| - 1.6e-21 76.9 0.1 3.8e-21 75.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88602278|ref|YP_502456.1| - 3.4e-08 33.4 1.4 5.7e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|88602278|ref|YP_502456.1| - 5.1e-06 26.3 0.0 1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|88602278|ref|YP_502456.1| - 0.001 18.9 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phi-29_GP16_7 PF06720.11 gi|88602278|ref|YP_502456.1| - 0.0047 16.8 0.2 0.01 15.7 0.2 1.5 1 0 0 1 1 1 1 Bacteriophage phi-29 early protein GP16.7 HAUS2 PF15003.6 gi|88602278|ref|YP_502456.1| - 0.071 12.8 1.4 0.12 12.1 1.4 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 DUF4761 PF15958.5 gi|88602278|ref|YP_502456.1| - 0.17 12.0 0.0 0.36 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4761) CheB_methylest PF01339.17 gi|88602279|ref|YP_502457.1| - 6.5e-52 175.7 0.0 1.1e-51 174.9 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|88602279|ref|YP_502457.1| - 1.4e-20 73.5 0.1 3.5e-20 72.2 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|88602280|ref|YP_502458.1| - 2e-24 85.9 0.2 4.9e-24 84.6 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|88602280|ref|YP_502458.1| - 4.9e-17 61.8 0.9 1.2e-16 60.6 0.9 1.7 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|88602280|ref|YP_502458.1| - 8.5e-16 58.5 0.1 6.3e-15 55.7 0.2 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|88602280|ref|YP_502458.1| - 9.3e-15 54.7 0.5 1.6e-13 50.7 0.2 2.6 2 1 0 2 2 2 1 Hpt domain HATPase_c_3 PF13589.6 gi|88602280|ref|YP_502458.1| - 0.0012 18.7 0.1 0.0028 17.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IFT57 PF10498.9 gi|88602280|ref|YP_502458.1| - 0.0069 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 GCV_T_C PF08669.11 gi|88602280|ref|YP_502458.1| - 0.023 14.6 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain MCPsignal PF00015.21 gi|88602281|ref|YP_502459.1| - 5.1e-32 111.0 47.0 2.3e-31 108.9 22.2 4.0 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88602281|ref|YP_502459.1| - 3.1e-19 69.2 1.2 3.1e-19 69.2 1.2 3.9 5 0 0 5 5 5 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88602281|ref|YP_502459.1| - 7.4e-13 48.7 7.5 1.3e-10 41.4 0.2 6.1 7 2 2 9 9 9 1 HAMP domain TarH PF02203.15 gi|88602281|ref|YP_502459.1| - 0.00094 19.2 0.0 0.00094 19.2 0.0 3.7 5 1 1 6 6 5 1 Tar ligand binding domain homologue Latarcin PF10279.9 gi|88602281|ref|YP_502459.1| - 0.0063 16.9 0.0 2.7 8.5 0.0 4.4 3 2 0 3 3 3 1 Latarcin precursor EDR1 PF14381.6 gi|88602281|ref|YP_502459.1| - 0.36 10.5 3.0 0.93 9.2 0.0 2.6 2 1 0 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 DUF1664 PF07889.12 gi|88602281|ref|YP_502459.1| - 0.54 10.3 23.6 0.21 11.7 6.0 5.5 4 1 2 6 6 6 0 Protein of unknown function (DUF1664) LOH1CR12 PF10158.9 gi|88602281|ref|YP_502459.1| - 1.6 8.7 10.8 0.74 9.8 4.3 3.7 2 1 2 4 4 4 0 Tumour suppressor protein DUF948 PF06103.11 gi|88602281|ref|YP_502459.1| - 1.8 8.9 34.8 0.48 10.7 6.9 7.8 5 2 3 8 8 8 0 Bacterial protein of unknown function (DUF948) GCN5L1 PF06320.13 gi|88602281|ref|YP_502459.1| - 2.3 8.4 14.9 0.2 11.8 3.1 3.8 4 0 0 4 4 4 0 GCN5-like protein 1 (GCN5L1) BLOC1_2 PF10046.9 gi|88602281|ref|YP_502459.1| - 3.6 8.0 19.7 0.56 10.5 5.1 5.5 5 1 1 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1759 PF03564.15 gi|88602281|ref|YP_502459.1| - 3.8 7.4 7.7 2.7 7.9 0.0 3.7 4 1 0 4 4 4 0 Protein of unknown function (DUF1759) CheW PF01584.19 gi|88602282|ref|YP_502460.1| - 1.4e-24 86.3 0.1 1.8e-24 86.0 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.18 gi|88602283|ref|YP_502461.1| - 2.6e-45 154.3 0.0 3.9e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain TPR_1 PF00515.28 gi|88602283|ref|YP_502461.1| - 0.00034 20.3 1.5 0.48 10.3 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602283|ref|YP_502461.1| - 0.00042 20.8 0.3 0.87 10.1 0.0 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602283|ref|YP_502461.1| - 0.00094 19.2 0.4 0.76 10.1 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602283|ref|YP_502461.1| - 0.0013 18.7 1.6 0.51 10.6 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat Methyltransf_12 PF08242.12 gi|88602283|ref|YP_502461.1| - 0.0041 17.8 0.0 0.1 13.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602283|ref|YP_502461.1| - 0.014 16.1 0.0 0.57 10.9 0.0 2.7 2 0 0 2 2 2 0 Methyltransferase domain TPR_12 PF13424.6 gi|88602283|ref|YP_502461.1| - 0.039 14.2 1.5 0.7 10.2 0.4 2.7 1 1 1 2 2 2 0 Tetratricopeptide repeat Engrail_1_C_sig PF10525.9 gi|88602283|ref|YP_502461.1| - 0.06 12.6 0.2 0.14 11.4 0.2 1.6 1 0 0 1 1 1 0 Engrailed homeobox C-terminal signature domain Methyltransf_11 PF08241.12 gi|88602283|ref|YP_502461.1| - 0.1 13.3 0.0 0.46 11.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain TPR_14 PF13428.6 gi|88602283|ref|YP_502461.1| - 0.19 12.6 3.4 8.3 7.5 0.2 3.2 2 1 2 4 4 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602283|ref|YP_502461.1| - 1.1 9.9 3.8 6.8 7.4 0.5 2.4 1 1 0 2 2 2 0 Tetratricopeptide repeat CheW PF01584.19 gi|88602284|ref|YP_502462.1| - 3.7e-18 65.5 0.2 4.4e-18 65.3 0.2 1.1 1 0 0 1 1 1 1 CheW-like domain Rep_fac_C PF08542.11 gi|88602285|ref|YP_502463.1| - 3.7e-20 72.1 0.0 1.3e-19 70.4 0.0 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|88602285|ref|YP_502463.1| - 3.4e-16 59.9 0.0 1.1e-14 55.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|88602285|ref|YP_502463.1| - 7.4e-15 55.1 0.0 4.3e-10 39.6 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|88602285|ref|YP_502463.1| - 1.6e-07 31.2 0.0 1.4e-05 24.9 0.0 2.7 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|88602285|ref|YP_502463.1| - 3.8e-06 27.4 0.1 0.0004 20.8 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|88602285|ref|YP_502463.1| - 4.9e-05 23.6 0.1 0.00011 22.5 0.1 1.6 1 0 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|88602285|ref|YP_502463.1| - 6.3e-05 22.8 0.0 0.0001 22.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|88602285|ref|YP_502463.1| - 0.00014 21.3 0.0 0.074 12.4 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 gi|88602285|ref|YP_502463.1| - 0.00026 21.1 0.0 0.00065 19.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Rad17 PF03215.15 gi|88602285|ref|YP_502463.1| - 0.00038 20.4 0.0 0.00072 19.5 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain ResIII PF04851.15 gi|88602285|ref|YP_502463.1| - 0.00069 19.7 0.0 0.0035 17.4 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|88602285|ref|YP_502463.1| - 0.0007 19.9 0.4 0.42 10.9 0.1 2.7 2 1 1 3 3 3 1 AAA domain AAA_3 PF07726.11 gi|88602285|ref|YP_502463.1| - 0.00093 19.1 0.0 0.002 18.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|88602285|ref|YP_502463.1| - 0.00097 19.2 0.0 0.0025 17.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.26 gi|88602285|ref|YP_502463.1| - 0.0012 18.5 0.0 0.35 10.6 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|88602285|ref|YP_502463.1| - 0.0015 18.3 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|88602285|ref|YP_502463.1| - 0.002 17.4 0.0 0.018 14.3 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain Viral_helicase1 PF01443.18 gi|88602285|ref|YP_502463.1| - 0.0087 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|88602285|ref|YP_502463.1| - 0.011 16.3 0.0 0.02 15.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88602285|ref|YP_502463.1| - 0.013 15.0 0.0 0.026 14.0 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 gi|88602285|ref|YP_502463.1| - 0.013 14.9 0.0 0.036 13.5 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein TrwB_AAD_bind PF10412.9 gi|88602285|ref|YP_502463.1| - 0.017 14.1 0.0 0.099 11.5 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|88602285|ref|YP_502463.1| - 0.017 14.6 0.0 0.057 12.9 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|88602285|ref|YP_502463.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|88602285|ref|YP_502463.1| - 0.025 13.8 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|88602285|ref|YP_502463.1| - 0.026 14.1 0.0 0.046 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88602285|ref|YP_502463.1| - 0.031 14.0 0.3 0.12 12.1 0.3 2.1 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|88602285|ref|YP_502463.1| - 0.039 13.2 0.0 0.16 11.2 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|88602285|ref|YP_502463.1| - 0.051 13.6 0.0 0.27 11.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CobA_CobO_BtuR PF02572.15 gi|88602285|ref|YP_502463.1| - 0.058 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FtsK_SpoIIIE PF01580.18 gi|88602285|ref|YP_502463.1| - 0.099 12.0 0.0 0.69 9.2 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|88602285|ref|YP_502463.1| - 0.11 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|88602285|ref|YP_502463.1| - 0.13 12.5 0.0 0.33 11.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|88602285|ref|YP_502463.1| - 0.14 12.5 0.1 0.37 11.1 0.1 1.8 2 1 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|88602285|ref|YP_502463.1| - 0.17 11.8 0.4 2.6 8.0 0.1 2.7 2 1 0 2 2 2 0 NACHT domain TPR_2 PF07719.17 gi|88602286|ref|YP_502464.1| - 1e-59 193.9 10.1 2.2e-05 24.2 0.0 16.1 16 1 0 16 16 16 10 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602286|ref|YP_502464.1| - 5.5e-48 158.9 0.3 0.00015 21.4 0.0 14.6 15 1 0 15 15 14 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602286|ref|YP_502464.1| - 5.8e-45 147.8 0.9 3.7e-05 23.6 0.0 14.0 14 0 0 14 14 14 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602286|ref|YP_502464.1| - 4.9e-44 145.2 24.1 0.00093 19.8 0.0 15.0 4 3 11 15 15 15 11 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602286|ref|YP_502464.1| - 8.6e-42 141.5 9.1 4.5e-07 30.4 1.3 9.9 4 3 6 11 11 11 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602286|ref|YP_502464.1| - 3.2e-41 136.7 1.0 0.00013 22.1 0.0 14.4 16 0 0 16 16 14 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602286|ref|YP_502464.1| - 1.9e-40 137.2 9.5 3.2e-07 30.8 0.0 9.9 3 3 7 12 12 12 11 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602286|ref|YP_502464.1| - 1.6e-33 114.6 19.0 3.7e-05 23.8 0.1 8.9 2 2 7 10 10 10 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602286|ref|YP_502464.1| - 1.6e-27 95.6 19.9 0.00021 21.5 0.0 11.0 7 4 5 12 12 12 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602286|ref|YP_502464.1| - 6e-27 91.7 19.6 0.014 15.4 0.0 14.4 14 1 0 14 14 13 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602286|ref|YP_502464.1| - 1e-26 92.3 0.0 0.00039 20.0 0.0 12.2 6 5 7 13 13 13 5 TPR repeat ANAPC3 PF12895.7 gi|88602286|ref|YP_502464.1| - 8.9e-23 80.3 0.2 0.0097 16.1 0.0 7.1 2 2 6 9 9 9 8 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88602286|ref|YP_502464.1| - 4.6e-16 58.3 10.7 1 10.1 0.0 12.2 14 0 0 14 14 12 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602286|ref|YP_502464.1| - 2.3e-14 52.5 12.5 4.1 8.3 0.0 10.7 11 0 0 11 11 10 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602286|ref|YP_502464.1| - 2.2e-09 36.8 0.2 0.041 12.8 0.0 5.7 2 2 4 6 6 6 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|88602286|ref|YP_502464.1| - 1.5e-08 34.2 6.1 0.4 9.8 0.1 5.9 3 2 1 6 6 6 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602286|ref|YP_502464.1| - 3.2e-07 30.0 15.3 1.1 9.2 0.0 8.8 10 0 0 10 10 8 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88602286|ref|YP_502464.1| - 3.6e-07 30.4 2.2 0.037 14.3 0.7 6.6 4 3 3 7 7 7 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88602286|ref|YP_502464.1| - 1.2e-06 28.4 0.7 0.00045 20.0 0.5 3.8 4 1 0 4 4 4 1 Tetratricopeptide repeat-like domain TPR_3 PF07720.12 gi|88602286|ref|YP_502464.1| - 5.9e-06 26.1 3.8 0.042 13.9 0.0 5.6 6 0 0 6 6 5 1 Tetratricopeptide repeat ChAPs PF09295.10 gi|88602286|ref|YP_502464.1| - 1.4e-05 24.3 0.1 0.0016 17.5 0.1 2.9 3 0 0 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) Sel1 PF08238.12 gi|88602286|ref|YP_502464.1| - 4.5e-05 24.0 1.5 2.4 9.0 0.0 6.6 7 0 0 7 7 7 1 Sel1 repeat Coatomer_E PF04733.14 gi|88602286|ref|YP_502464.1| - 5.4e-05 22.8 0.0 2.4 7.5 0.0 4.2 4 0 0 4 4 4 1 Coatomer epsilon subunit PPR PF01535.20 gi|88602286|ref|YP_502464.1| - 7.6e-05 22.7 8.9 54 4.3 0.0 8.6 9 0 0 9 9 8 0 PPR repeat HrpB1_HrpK PF09613.10 gi|88602286|ref|YP_502464.1| - 0.0001 21.9 0.1 3.6 7.3 0.1 4.7 5 0 0 5 5 5 1 Bacterial type III secretion protein (HrpB1_HrpK) PknG_TPR PF16918.5 gi|88602286|ref|YP_502464.1| - 0.00016 20.6 1.7 0.74 8.5 0.1 3.8 3 1 1 4 4 4 2 Protein kinase G tetratricopeptide repeat DUF3808 PF10300.9 gi|88602286|ref|YP_502464.1| - 0.00053 18.8 0.5 0.088 11.5 0.0 3.1 3 1 0 4 4 4 1 Protein of unknown function (DUF3808) Fis1_TPR_C PF14853.6 gi|88602286|ref|YP_502464.1| - 0.0014 18.7 9.1 3.7 7.7 0.0 6.8 8 2 3 11 11 9 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88602286|ref|YP_502464.1| - 0.017 15.6 0.2 47 4.4 0.0 4.5 4 2 0 5 5 5 0 Alkyl sulfatase dimerisation Clathrin PF00637.20 gi|88602286|ref|YP_502464.1| - 0.018 14.9 1.9 29 4.5 0.4 4.6 5 3 0 5 5 4 0 Region in Clathrin and VPS BTAD PF03704.17 gi|88602286|ref|YP_502464.1| - 0.025 15.0 5.2 19 5.7 0.1 4.5 3 1 1 4 4 4 0 Bacterial transcriptional activator domain SPO22 PF08631.10 gi|88602286|ref|YP_502464.1| - 0.04 13.4 0.3 2.1 7.8 0.0 3.5 3 1 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like RPN7 PF10602.9 gi|88602286|ref|YP_502464.1| - 0.076 12.7 0.1 36 4.0 0.0 3.8 4 0 0 4 4 4 0 26S proteasome subunit RPN7 TOM20_plant PF06552.12 gi|88602286|ref|YP_502464.1| - 0.17 11.6 3.2 33 4.2 0.0 4.1 4 1 0 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_2 PF07719.17 gi|88602287|ref|YP_502465.1| - 2.4e-85 273.9 47.3 1.4e-07 31.1 0.0 15.9 16 1 1 17 17 15 15 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602287|ref|YP_502465.1| - 2.3e-83 270.9 47.3 1.6e-09 37.2 0.0 16.7 16 1 1 17 17 17 15 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602287|ref|YP_502465.1| - 8.4e-70 225.3 43.2 2.1e-07 30.6 0.0 16.3 15 2 1 16 16 16 14 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602287|ref|YP_502465.1| - 2.6e-63 209.4 66.5 1.5e-06 27.8 0.2 15.9 5 4 11 16 16 16 13 TPR repeat TPR_16 PF13432.6 gi|88602287|ref|YP_502465.1| - 5.2e-61 203.0 32.2 1.1e-09 38.8 0.2 9.8 5 2 3 10 10 10 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602287|ref|YP_502465.1| - 5e-47 154.6 29.4 0.00025 21.6 0.0 15.4 4 4 12 16 16 16 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602287|ref|YP_502465.1| - 1.3e-46 153.6 35.1 6.8e-05 23.0 0.3 15.0 16 0 0 16 16 16 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602287|ref|YP_502465.1| - 1.1e-44 150.8 43.1 8.3e-08 32.6 0.2 9.6 5 1 6 11 11 11 10 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602287|ref|YP_502465.1| - 1.9e-36 124.1 21.6 1e-06 28.9 2.6 7.1 4 2 3 7 7 7 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|88602287|ref|YP_502465.1| - 2.4e-36 123.9 35.5 7.9e-09 35.7 0.4 10.7 5 4 7 12 12 11 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602287|ref|YP_502465.1| - 1.1e-35 121.6 10.3 2.1e-06 27.8 0.4 9.6 5 3 5 11 11 10 8 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602287|ref|YP_502465.1| - 2e-26 90.8 32.8 0.04 14.5 0.0 15.3 16 0 0 16 16 15 6 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602287|ref|YP_502465.1| - 1.7e-15 56.9 14.4 0.02 13.8 0.0 6.5 4 2 3 7 7 7 5 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 gi|88602287|ref|YP_502465.1| - 9.6e-15 53.5 24.0 0.29 11.2 0.0 12.3 10 2 2 12 12 11 3 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602287|ref|YP_502465.1| - 5.6e-10 38.9 0.0 1.1 10.0 0.0 8.6 11 0 0 11 11 7 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88602287|ref|YP_502465.1| - 9.7e-07 28.8 17.4 0.0005 20.1 0.4 5.2 5 1 1 6 6 5 2 Putative TPR-like repeat TPR_10 PF13374.6 gi|88602287|ref|YP_502465.1| - 6.9e-06 25.8 41.7 0.063 13.2 0.0 11.3 14 0 0 14 14 11 2 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|88602287|ref|YP_502465.1| - 3.5e-05 23.4 3.0 0.32 10.6 0.1 5.0 4 2 1 6 6 6 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_20 PF14561.6 gi|88602287|ref|YP_502465.1| - 0.00011 22.5 24.8 1.5 9.2 0.0 7.9 6 1 1 8 8 8 1 Tetratricopeptide repeat BTAD PF03704.17 gi|88602287|ref|YP_502465.1| - 0.00019 21.9 14.9 0.14 12.6 0.0 6.4 3 2 5 8 8 8 1 Bacterial transcriptional activator domain RPN7 PF10602.9 gi|88602287|ref|YP_502465.1| - 0.00032 20.5 12.6 0.46 10.2 0.4 6.3 4 4 3 7 7 6 1 26S proteasome subunit RPN7 DUF3856 PF12968.7 gi|88602287|ref|YP_502465.1| - 0.00033 20.7 14.7 0.17 12.0 0.0 7.1 4 3 3 7 7 6 1 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.6 gi|88602287|ref|YP_502465.1| - 0.0024 17.9 20.1 0.0035 17.4 0.6 7.0 7 1 1 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat YfiO PF13525.6 gi|88602287|ref|YP_502465.1| - 0.0027 17.5 0.1 0.0027 17.5 0.1 5.4 3 3 2 5 5 5 1 Outer membrane lipoprotein MIT PF04212.18 gi|88602287|ref|YP_502465.1| - 0.0084 16.2 23.0 6 7.0 0.1 8.9 9 0 0 9 9 8 0 MIT (microtubule interacting and transport) domain PknG_TPR PF16918.5 gi|88602287|ref|YP_502465.1| - 0.012 14.4 8.3 2.8 6.6 0.1 5.4 5 2 1 7 7 7 0 Protein kinase G tetratricopeptide repeat ANAPC5 PF12862.7 gi|88602287|ref|YP_502465.1| - 0.012 15.7 19.3 0.47 10.6 5.3 7.0 6 3 1 7 7 7 0 Anaphase-promoting complex subunit 5 FAT PF02259.23 gi|88602287|ref|YP_502465.1| - 0.017 14.4 13.5 1.9 7.6 0.0 5.8 2 1 3 6 6 6 0 FAT domain SHNi-TPR PF10516.9 gi|88602287|ref|YP_502465.1| - 0.03 13.8 23.8 0.07 12.6 0.4 6.6 7 0 0 7 7 6 0 SHNi-TPR HTH_Bact PF18768.1 gi|88602287|ref|YP_502465.1| - 0.033 13.8 4.9 2.9 7.6 0.2 5.7 6 1 0 6 6 6 0 Helix-turn-helix bacterial domain Ribosomal_S21 PF01165.20 gi|88602287|ref|YP_502465.1| - 0.63 9.8 3.3 69 3.3 0.0 4.3 5 0 0 5 5 5 0 Ribosomal protein S21 DUF4192 PF13830.6 gi|88602287|ref|YP_502465.1| - 2.2 8.3 6.7 0.85 9.6 0.0 2.9 3 1 0 3 3 2 0 Domain of unknown function (DUF4192) CCP_MauG PF03150.14 gi|88602287|ref|YP_502465.1| - 5.5 7.6 10.4 40 4.8 4.5 3.7 3 1 0 3 3 2 0 Di-haem cytochrome c peroxidase DUF5113 PF17140.4 gi|88602287|ref|YP_502465.1| - 8.6 6.1 16.8 0.25 11.2 0.5 4.6 6 1 1 7 7 7 0 Domain of unknown function (DUF5113) UxuA PF03786.13 gi|88602288|ref|YP_502466.1| - 0.055 12.3 1.1 1.3 7.8 0.0 2.0 2 0 0 2 2 2 0 D-mannonate dehydratase (UxuA) D5_N PF08706.11 gi|88602291|ref|YP_502469.1| - 6.1e-27 94.8 0.7 1.1e-26 93.9 0.7 1.4 1 0 0 1 1 1 1 D5 N terminal like PriCT_1 PF08708.11 gi|88602291|ref|YP_502469.1| - 2.8e-14 52.6 0.0 6.3e-14 51.5 0.0 1.6 1 0 0 1 1 1 1 Primase C terminal 1 (PriCT-1) Prim-Pol PF09250.11 gi|88602291|ref|YP_502469.1| - 1.6e-11 44.8 0.0 3.2e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal Pox_D5 PF03288.16 gi|88602291|ref|YP_502469.1| - 0.0032 17.9 0.0 0.012 16.1 0.0 2.1 1 0 0 1 1 1 1 Poxvirus D5 protein-like Phage_integrase PF00589.22 gi|88602293|ref|YP_502471.1| - 6.8e-28 97.6 0.0 1.2e-27 96.7 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.7 gi|88602293|ref|YP_502471.1| - 0.00069 19.6 0.6 0.0013 18.7 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|88602293|ref|YP_502471.1| - 0.0023 17.2 2.0 0.004 16.4 2.0 1.4 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-NADH-PPase PF09297.11 gi|88602293|ref|YP_502471.1| - 0.029 14.0 0.3 0.029 14.0 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|88602293|ref|YP_502471.1| - 0.046 13.5 4.0 0.095 12.4 4.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|88602293|ref|YP_502471.1| - 0.074 13.8 0.8 0.13 13.0 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|88602293|ref|YP_502471.1| - 1.3 8.5 4.2 0.72 9.3 0.3 1.8 1 1 1 2 2 2 0 zinc-ribbon domain ABC_tran PF00005.27 gi|88602295|ref|YP_502473.1| - 1.3e-21 77.5 0.0 1.9e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88602295|ref|YP_502473.1| - 4.5e-09 36.6 0.8 9.3e-05 22.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CLP1_P PF16575.5 gi|88602295|ref|YP_502473.1| - 0.0042 16.9 0.0 0.0098 15.7 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_23 PF13476.6 gi|88602295|ref|YP_502473.1| - 0.005 17.4 0.4 0.0088 16.6 0.4 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88602295|ref|YP_502473.1| - 0.0098 15.6 0.2 0.02 14.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|88602295|ref|YP_502473.1| - 0.018 14.8 0.1 0.029 14.2 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Rad17 PF03215.15 gi|88602295|ref|YP_502473.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|88602295|ref|YP_502473.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|88602295|ref|YP_502473.1| - 0.12 12.1 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|88602295|ref|YP_502473.1| - 0.12 11.5 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_15 PF13175.6 gi|88602295|ref|YP_502473.1| - 0.13 11.9 0.6 2.1 8.0 0.2 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|88602295|ref|YP_502473.1| - 0.16 12.4 0.1 0.33 11.4 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|88602295|ref|YP_502473.1| - 0.17 12.3 0.1 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AFOR_N PF02730.15 gi|88602296|ref|YP_502474.1| - 2.1e-62 210.5 0.1 3.4e-62 209.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|88602296|ref|YP_502474.1| - 5.3e-56 190.3 0.0 6.9e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 TPR_4 PF07721.14 gi|88602296|ref|YP_502474.1| - 0.11 13.1 0.1 0.39 11.5 0.1 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Fer4_9 PF13187.6 gi|88602297|ref|YP_502475.1| - 1.8e-09 37.6 38.2 2.5e-05 24.3 8.2 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602297|ref|YP_502475.1| - 4.7e-09 35.7 24.3 6.9e-05 22.5 5.7 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88602297|ref|YP_502475.1| - 5.8e-09 36.4 18.4 9.7e-05 22.9 1.0 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|88602297|ref|YP_502475.1| - 5.6e-08 32.8 10.2 4.5e-07 29.9 10.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602297|ref|YP_502475.1| - 1.1e-07 32.6 14.8 0.002 19.0 0.6 3.3 3 0 0 3 3 3 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|88602297|ref|YP_502475.1| - 1.1e-06 28.3 21.3 0.0089 16.1 2.2 3.4 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88602297|ref|YP_502475.1| - 0.00065 19.8 24.5 0.011 15.8 14.6 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602297|ref|YP_502475.1| - 0.0029 17.7 20.6 0.52 10.5 11.4 2.8 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88602297|ref|YP_502475.1| - 0.017 15.7 22.2 0.032 14.8 1.9 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602297|ref|YP_502475.1| - 0.017 15.2 1.5 0.017 15.2 1.5 3.6 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88602297|ref|YP_502475.1| - 0.19 12.8 26.3 0.86 10.7 3.6 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88602297|ref|YP_502475.1| - 0.2 12.1 19.6 0.46 11.0 2.1 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88602297|ref|YP_502475.1| - 0.32 11.7 0.7 0.32 11.7 0.7 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain tRNA-Thr_ED PF08915.11 gi|88602298|ref|YP_502476.1| - 2.9e-51 173.1 0.0 5.1e-51 172.3 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|88602298|ref|YP_502476.1| - 4.8e-19 68.3 0.9 8.1e-19 67.6 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|88602298|ref|YP_502476.1| - 4.6e-14 52.8 0.0 1.3e-13 51.3 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) dUTPase PF00692.19 gi|88602299|ref|YP_502477.1| - 2.5e-11 43.4 0.0 3.6e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|88602299|ref|YP_502477.1| - 3.1e-10 39.4 0.0 4.8e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) SpoU_methylase PF00588.19 gi|88602300|ref|YP_502478.1| - 1e-28 100.3 0.0 1.4e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Flavoprotein PF02441.19 gi|88602300|ref|YP_502478.1| - 0.13 12.1 0.0 0.24 11.1 0.0 1.3 1 1 0 1 1 1 0 Flavoprotein PcrB PF01884.17 gi|88602301|ref|YP_502479.1| - 1.3e-65 221.1 1.2 1.5e-65 220.8 1.2 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|88602301|ref|YP_502479.1| - 0.041 12.7 0.2 0.12 11.2 0.1 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Topoisom_bac PF01131.20 gi|88602302|ref|YP_502480.1| - 1.2e-122 409.9 0.1 2e-122 409.2 0.1 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|88602302|ref|YP_502480.1| - 2.6e-14 53.3 0.1 6.5e-14 52.0 0.1 1.8 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|88602302|ref|YP_502480.1| - 3.4e-14 53.2 7.4 6.9e-06 26.6 0.2 4.6 4 0 0 4 4 4 3 Helix-hairpin-helix domain zf-C4_Topoisom PF01396.19 gi|88602302|ref|YP_502480.1| - 5e-09 35.8 3.7 1.4e-08 34.4 3.7 1.8 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Cdd1 PF11731.8 gi|88602302|ref|YP_502480.1| - 0.0025 18.0 0.2 0.15 12.3 0.0 3.1 4 0 0 4 4 4 1 Pathogenicity locus HHH PF00633.23 gi|88602302|ref|YP_502480.1| - 0.041 13.8 0.1 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HhH-GPD PF00730.25 gi|88602302|ref|YP_502480.1| - 0.1 13.1 0.7 42 4.7 0.0 4.4 3 1 1 4 4 4 0 HhH-GPD superfamily base excision DNA repair protein IMS_HHH PF11798.8 gi|88602302|ref|YP_502480.1| - 0.13 12.6 0.0 0.46 10.9 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif GatB_N PF02934.15 gi|88602303|ref|YP_502481.1| - 3.2e-104 348.2 0.0 4.2e-104 347.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|88602303|ref|YP_502481.1| - 2.9e-39 134.3 0.0 4.6e-39 133.7 0.0 1.3 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|88602303|ref|YP_502481.1| - 0.0016 18.5 0.2 0.0085 16.2 0.1 2.0 1 1 1 2 2 2 1 Yqey-like protein Amidase PF01425.21 gi|88602304|ref|YP_502482.1| - 9.3e-149 496.2 0.5 1.1e-148 496.0 0.5 1.0 1 0 0 1 1 1 1 Amidase PEP_hydrolase PF09370.10 gi|88602304|ref|YP_502482.1| - 0.019 14.2 0.0 0.3 10.3 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like Glu-tRNAGln PF02686.15 gi|88602305|ref|YP_502483.1| - 3.9e-13 49.5 0.1 5.8e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Asn_synthase PF00733.21 gi|88602306|ref|YP_502484.1| - 1e-36 127.4 0.2 2.3e-23 83.5 0.0 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|88602306|ref|YP_502484.1| - 0.0024 17.0 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|88602306|ref|YP_502484.1| - 0.23 10.2 0.7 1.1 7.9 0.7 1.9 1 1 0 1 1 1 0 tRNA methyl transferase Glyco_hydro_26 PF02156.15 gi|88602307|ref|YP_502485.1| - 4.5e-08 32.9 0.4 6.2e-08 32.4 0.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 UDG PF03167.19 gi|88602308|ref|YP_502486.1| - 8.3e-12 45.4 0.0 9.7e-12 45.1 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily BsuBI_PstI_RE PF06616.11 gi|88602308|ref|YP_502486.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease domain Enolase_C PF00113.22 gi|88602309|ref|YP_502487.1| - 1.2e-125 418.7 0.0 1.5e-125 418.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|88602309|ref|YP_502487.1| - 2.1e-52 176.7 0.0 3.5e-52 176.0 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.11 gi|88602309|ref|YP_502487.1| - 3.7e-05 23.0 0.3 7.3e-05 22.0 0.3 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.6 gi|88602309|ref|YP_502487.1| - 0.0018 17.9 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like SAP PF02037.27 gi|88602309|ref|YP_502487.1| - 0.15 11.8 0.2 0.35 10.7 0.2 1.6 1 0 0 1 1 1 0 SAP domain OGG_N PF07934.12 gi|88602311|ref|YP_502489.1| - 2.7e-14 53.3 0.1 2.7e-12 46.9 0.1 2.3 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.25 gi|88602311|ref|YP_502489.1| - 4.5e-10 39.9 0.0 7.6e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|88602311|ref|YP_502489.1| - 1.2e-05 24.9 0.0 3.2e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|88602311|ref|YP_502489.1| - 0.053 14.1 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain PHO4 PF01384.20 gi|88602312|ref|YP_502490.1| - 4.2e-81 272.6 47.3 1.1e-79 267.9 47.3 2.7 1 1 0 1 1 1 1 Phosphate transporter family PTPS_related PF10131.9 gi|88602312|ref|YP_502490.1| - 0.1 10.9 14.5 0.14 10.5 14.5 1.2 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein PhoU_div PF01865.16 gi|88602313|ref|YP_502491.1| - 2.1e-21 76.2 1.7 3.1e-21 75.7 1.7 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 BLYB PF05289.11 gi|88602313|ref|YP_502491.1| - 0.071 13.3 1.3 1.7 8.9 0.1 2.8 2 1 1 3 3 3 0 Borrelia hemolysin accessory protein FrhB_FdhB_C PF04432.13 gi|88602313|ref|YP_502491.1| - 0.22 11.3 0.9 0.4 10.5 0.2 1.9 2 1 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus PHO4 PF01384.20 gi|88602314|ref|YP_502492.1| - 2.7e-68 230.5 52.3 8.6e-46 156.5 32.4 2.7 1 1 1 2 2 2 2 Phosphate transporter family PhoU_div PF01865.16 gi|88602315|ref|YP_502493.1| - 7.4e-16 58.1 3.0 1.1e-15 57.6 3.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 ArAE_1_C PF11728.8 gi|88602315|ref|YP_502493.1| - 0.089 12.8 2.3 0.45 10.5 0.1 2.8 2 1 0 3 3 3 0 Putative aromatic acid exporter C-terminal domain PMC2NT PF08066.12 gi|88602315|ref|YP_502493.1| - 0.1 13.3 2.2 0.2 12.4 0.3 2.3 2 1 0 2 2 2 0 PMC2NT (NUC016) domain RuvB_N PF05496.12 gi|88602315|ref|YP_502493.1| - 0.16 11.7 0.8 5.5 6.7 0.1 2.4 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NBD94 PF16830.5 gi|88602315|ref|YP_502493.1| - 0.24 11.8 4.9 23 5.5 0.2 3.3 3 1 0 3 3 3 0 Nucleotide-Binding Domain 94 of RH Syntaxin_2 PF14523.6 gi|88602315|ref|YP_502493.1| - 1.7 9.1 4.8 43 4.6 1.1 3.3 2 2 0 2 2 2 0 Syntaxin-like protein Response_reg PF00072.24 gi|88602317|ref|YP_502495.1| - 1.7e-21 76.5 0.0 3.3e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88602317|ref|YP_502495.1| - 4.1e-13 49.3 0.0 1e-05 25.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|88602317|ref|YP_502495.1| - 1.4e-08 35.0 0.0 0.0032 17.7 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|88602317|ref|YP_502495.1| - 3.6e-08 33.2 0.0 0.00024 21.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|88602317|ref|YP_502495.1| - 1e-06 29.1 0.0 0.0019 18.5 0.0 2.4 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|88602317|ref|YP_502495.1| - 0.00015 22.4 0.0 0.00084 20.0 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|88602317|ref|YP_502495.1| - 0.017 15.4 0.2 0.78 10.0 0.0 3.3 3 1 0 3 3 3 0 PAS domain INCENP_ARK-bind PF03941.15 gi|88602317|ref|YP_502495.1| - 0.13 12.2 0.2 0.25 11.3 0.2 1.4 1 0 0 1 1 1 0 Inner centromere protein, ARK binding region TIM PF00121.18 gi|88602318|ref|YP_502496.1| - 2.4e-07 30.4 0.0 3.7e-07 29.8 0.0 1.3 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|88602318|ref|YP_502496.1| - 4.3e-05 22.9 0.5 9.9e-05 21.8 0.3 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|88602318|ref|YP_502496.1| - 0.056 12.9 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein Peptidase_U32 PF01136.19 gi|88602319|ref|YP_502497.1| - 1.9e-85 285.8 0.0 3e-74 249.1 0.0 3.1 3 0 0 3 3 3 3 Peptidase family U32 DUF3656 PF12392.8 gi|88602319|ref|YP_502497.1| - 5.7e-19 68.7 0.0 1.2e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Collagenase Chorismate_synt PF01264.21 gi|88602320|ref|YP_502498.1| - 9e-131 435.4 0.9 1.2e-130 435.0 0.9 1.2 1 0 0 1 1 1 1 Chorismate synthase SKI PF01202.22 gi|88602321|ref|YP_502499.1| - 1.1e-42 145.8 0.0 1.7e-42 145.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.11 gi|88602321|ref|YP_502499.1| - 2.6e-23 82.1 0.0 5.7e-23 81.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|88602321|ref|YP_502499.1| - 9.7e-06 25.7 0.0 2.6e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|88602321|ref|YP_502499.1| - 4.1e-05 23.3 0.0 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain AAA_18 PF13238.6 gi|88602321|ref|YP_502499.1| - 0.00071 20.1 0.0 0.002 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|88602321|ref|YP_502499.1| - 0.0056 16.9 0.1 0.075 13.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|88602321|ref|YP_502499.1| - 0.024 14.5 0.0 8.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 gi|88602321|ref|YP_502499.1| - 0.035 14.1 0.2 0.13 12.3 0.0 2.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Cytidylate_kin PF02224.18 gi|88602321|ref|YP_502499.1| - 0.061 13.0 0.1 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase DUF815 PF05673.13 gi|88602321|ref|YP_502499.1| - 0.18 11.0 0.1 0.26 10.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) EPSP_synthase PF00275.20 gi|88602322|ref|YP_502500.1| - 3.4e-112 375.2 0.0 4.1e-112 374.9 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDT PF00800.18 gi|88602323|ref|YP_502501.1| - 2e-39 135.3 0.0 2.5e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|88602323|ref|YP_502501.1| - 1.7e-06 27.7 0.0 3.7e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|88602323|ref|YP_502501.1| - 0.027 15.1 0.0 0.23 12.1 0.0 2.1 2 0 0 2 2 2 0 ACT domain PDH PF02153.17 gi|88602324|ref|YP_502502.1| - 9.8e-40 136.2 0.0 1.2e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|88602324|ref|YP_502502.1| - 1.1e-06 29.2 4.6 0.016 15.8 0.1 2.6 1 1 1 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|88602324|ref|YP_502502.1| - 9.4e-05 22.4 0.6 0.15 11.9 0.2 2.5 2 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|88602324|ref|YP_502502.1| - 0.0015 18.8 2.0 0.084 13.0 2.0 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.20 gi|88602324|ref|YP_502502.1| - 0.0049 17.0 0.1 0.0083 16.2 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.16 gi|88602324|ref|YP_502502.1| - 0.0055 16.4 0.8 2.4 7.8 0.2 2.6 1 1 1 2 2 2 2 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|88602324|ref|YP_502502.1| - 0.011 15.3 0.1 0.02 14.4 0.0 1.4 2 0 0 2 2 2 0 NmrA-like family Glyco_trans_4_2 PF13477.6 gi|88602324|ref|YP_502502.1| - 0.048 13.7 0.1 0.2 11.7 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like B12-binding PF02310.19 gi|88602324|ref|YP_502502.1| - 0.08 13.0 0.0 0.47 10.5 0.0 2.1 2 1 0 2 2 2 0 B12 binding domain LpxI_N PF17930.1 gi|88602324|ref|YP_502502.1| - 0.15 12.0 0.1 0.35 10.8 0.1 1.7 1 0 0 1 1 1 0 LpxI N-terminal domain KR PF08659.10 gi|88602324|ref|YP_502502.1| - 0.16 11.9 0.1 0.37 10.7 0.0 1.6 2 0 0 2 2 2 0 KR domain DHQS PF01959.16 gi|88602325|ref|YP_502503.1| - 6.4e-124 413.4 0.1 7.2e-124 413.2 0.1 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II DeoC PF01791.9 gi|88602326|ref|YP_502504.1| - 4.4e-50 170.5 0.0 5.1e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DeoC PF01791.9 gi|88602327|ref|YP_502505.1| - 6.5e-54 183.0 0.0 7.7e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase HTH_3 PF01381.22 gi|88602328|ref|YP_502506.1| - 2.6e-07 30.6 0.7 4.6e-07 29.8 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix Pou PF00157.17 gi|88602328|ref|YP_502506.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 Pou domain - N-terminal to homeobox domain HTH_19 PF12844.7 gi|88602328|ref|YP_502506.1| - 0.0061 16.5 1.4 0.0099 15.9 1.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|88602328|ref|YP_502506.1| - 0.024 15.0 0.1 0.072 13.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AAA PF00004.29 gi|88602329|ref|YP_502507.1| - 7.2e-43 146.2 0.0 1.4e-42 145.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|88602329|ref|YP_502507.1| - 2.2e-12 46.6 0.0 5.5e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|88602329|ref|YP_502507.1| - 2.9e-11 43.1 0.2 6e-11 42.1 0.2 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain RuvB_N PF05496.12 gi|88602329|ref|YP_502507.1| - 4.8e-07 29.7 0.1 1.1e-06 28.4 0.1 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|88602329|ref|YP_502507.1| - 1.3e-06 28.9 0.1 0.00039 20.9 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|88602329|ref|YP_502507.1| - 1.9e-05 24.7 0.1 0.00011 22.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|88602329|ref|YP_502507.1| - 2.1e-05 24.7 0.0 7.8e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|88602329|ref|YP_502507.1| - 6.6e-05 23.2 0.7 0.0081 16.4 0.1 2.8 2 1 1 3 3 3 1 AAA domain Prot_ATP_OB_N PF17758.1 gi|88602329|ref|YP_502507.1| - 0.00024 20.7 0.1 0.0006 19.4 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain ATPase PF06745.13 gi|88602329|ref|YP_502507.1| - 0.00048 19.6 2.3 0.18 11.1 0.1 3.2 2 1 0 3 3 3 1 KaiC Filament PF00038.21 gi|88602329|ref|YP_502507.1| - 0.00079 19.1 2.1 0.0017 18.0 2.1 1.5 1 0 0 1 1 1 1 Intermediate filament protein AAA_18 PF13238.6 gi|88602329|ref|YP_502507.1| - 0.00082 19.9 0.0 0.0017 18.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88602329|ref|YP_502507.1| - 0.0032 17.2 0.0 0.0061 16.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|88602329|ref|YP_502507.1| - 0.0036 17.1 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|88602329|ref|YP_502507.1| - 0.0047 17.3 0.0 0.0092 16.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.13 gi|88602329|ref|YP_502507.1| - 0.005 16.0 0.0 0.017 14.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|88602329|ref|YP_502507.1| - 0.0059 16.6 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|88602329|ref|YP_502507.1| - 0.0065 15.7 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|88602329|ref|YP_502507.1| - 0.0079 16.4 0.0 0.02 15.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|88602329|ref|YP_502507.1| - 0.009 15.4 0.1 0.018 14.4 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|88602329|ref|YP_502507.1| - 0.014 15.6 0.5 0.029 14.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|88602329|ref|YP_502507.1| - 0.015 15.3 1.9 3.2 7.6 0.0 2.8 3 0 0 3 3 2 0 NTPase DivIC PF04977.15 gi|88602329|ref|YP_502507.1| - 0.022 14.5 4.0 0.052 13.3 1.8 2.4 1 1 1 2 2 2 0 Septum formation initiator Spc7 PF08317.11 gi|88602329|ref|YP_502507.1| - 0.025 13.5 0.9 0.05 12.5 0.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Uso1_p115_C PF04871.13 gi|88602329|ref|YP_502507.1| - 0.037 14.4 0.7 0.081 13.3 0.7 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Med21 PF11221.8 gi|88602329|ref|YP_502507.1| - 0.04 14.2 3.1 0.11 12.8 3.1 1.7 1 0 0 1 1 1 0 Subunit 21 of Mediator complex Parvo_NS1 PF01057.17 gi|88602329|ref|YP_502507.1| - 0.056 12.5 0.0 0.099 11.7 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.26 gi|88602329|ref|YP_502507.1| - 0.056 13.1 0.1 0.28 10.9 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain Troponin PF00992.20 gi|88602329|ref|YP_502507.1| - 0.058 13.7 4.7 0.11 12.8 4.7 1.4 1 0 0 1 1 1 0 Troponin AAA_7 PF12775.7 gi|88602329|ref|YP_502507.1| - 0.067 12.7 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF4515 PF14988.6 gi|88602329|ref|YP_502507.1| - 0.072 12.9 3.6 0.16 11.8 3.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) PhoH PF02562.16 gi|88602329|ref|YP_502507.1| - 0.077 12.4 0.1 0.2 11.1 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|88602329|ref|YP_502507.1| - 0.081 12.5 0.3 0.34 10.5 0.1 2.0 1 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|88602329|ref|YP_502507.1| - 0.11 12.4 0.1 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|88602329|ref|YP_502507.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3450 PF11932.8 gi|88602329|ref|YP_502507.1| - 0.12 11.7 2.1 0.22 10.8 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) NB-ARC PF00931.22 gi|88602329|ref|YP_502507.1| - 0.13 11.4 0.2 0.67 9.1 0.0 2.2 3 0 0 3 3 3 0 NB-ARC domain DUF2075 PF09848.9 gi|88602329|ref|YP_502507.1| - 0.14 11.4 0.1 0.44 9.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|88602329|ref|YP_502507.1| - 0.42 10.3 2.2 0.46 10.2 0.2 2.1 2 1 0 2 2 1 0 AAA domain AAA_11 PF13086.6 gi|88602329|ref|YP_502507.1| - 0.48 10.2 4.6 0.44 10.3 0.1 2.5 1 1 2 3 3 3 0 AAA domain bZIP_2 PF07716.15 gi|88602329|ref|YP_502507.1| - 0.83 9.8 9.0 0.57 10.3 0.9 2.8 2 1 1 3 3 3 0 Basic region leucine zipper ZapB PF06005.12 gi|88602329|ref|YP_502507.1| - 1.2 9.7 6.1 3.3 8.2 5.1 2.3 2 1 0 2 2 1 0 Cell division protein ZapB AAA PF00004.29 gi|88602331|ref|YP_502509.1| - 4.8e-45 153.2 0.1 2e-44 151.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|88602331|ref|YP_502509.1| - 1.2e-12 47.4 0.1 3e-12 46.1 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|88602331|ref|YP_502509.1| - 7.1e-08 32.8 0.0 1.6e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|88602331|ref|YP_502509.1| - 2.3e-06 28.1 0.1 0.00013 22.4 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|88602331|ref|YP_502509.1| - 5.9e-06 26.1 0.0 2.7e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|88602331|ref|YP_502509.1| - 1.5e-05 25.0 0.2 8.9e-05 22.5 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|88602331|ref|YP_502509.1| - 3.9e-05 23.9 0.2 0.0014 18.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain NACHT PF05729.12 gi|88602331|ref|YP_502509.1| - 0.00026 20.9 0.1 0.15 11.9 0.0 3.0 2 1 1 3 3 3 1 NACHT domain TIP49 PF06068.13 gi|88602331|ref|YP_502509.1| - 0.00037 19.8 0.0 0.00061 19.1 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|88602331|ref|YP_502509.1| - 0.00062 19.9 0.1 0.0017 18.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88602331|ref|YP_502509.1| - 0.0017 18.1 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|88602331|ref|YP_502509.1| - 0.003 17.6 0.0 0.0073 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|88602331|ref|YP_502509.1| - 0.0038 17.6 0.0 0.0077 16.6 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Sigma54_activat PF00158.26 gi|88602331|ref|YP_502509.1| - 0.01 15.5 0.2 0.12 12.1 0.2 2.7 1 1 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|88602331|ref|YP_502509.1| - 0.012 15.1 0.1 0.026 13.9 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|88602331|ref|YP_502509.1| - 0.013 16.0 0.0 0.05 14.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|88602331|ref|YP_502509.1| - 0.029 14.3 0.0 0.073 12.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|88602331|ref|YP_502509.1| - 0.03 14.3 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|88602331|ref|YP_502509.1| - 0.032 14.5 0.0 0.072 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|88602331|ref|YP_502509.1| - 0.045 13.8 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Torsin Zeta_toxin PF06414.12 gi|88602331|ref|YP_502509.1| - 0.047 13.0 0.0 0.37 10.0 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin ATPase_2 PF01637.18 gi|88602331|ref|YP_502509.1| - 0.05 13.5 0.3 12 5.7 0.0 2.9 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|88602331|ref|YP_502509.1| - 0.055 12.8 0.1 0.57 9.5 0.0 2.2 1 1 1 2 2 2 0 KaiC AAA_30 PF13604.6 gi|88602331|ref|YP_502509.1| - 0.064 13.0 0.2 0.18 11.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88602331|ref|YP_502509.1| - 0.08 12.5 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|88602331|ref|YP_502509.1| - 0.083 12.0 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|88602331|ref|YP_502509.1| - 0.087 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|88602331|ref|YP_502509.1| - 0.089 12.6 0.6 0.13 12.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|88602331|ref|YP_502509.1| - 0.12 11.5 0.0 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain ZapB PF06005.12 gi|88602331|ref|YP_502509.1| - 0.16 12.4 3.1 0.26 11.8 1.3 2.2 2 0 0 2 2 2 0 Cell division protein ZapB Parvo_NS1 PF01057.17 gi|88602331|ref|YP_502509.1| - 0.19 10.8 0.0 0.33 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 bZIP_1 PF00170.21 gi|88602331|ref|YP_502509.1| - 0.53 10.4 4.0 1 9.5 2.7 2.1 2 0 0 2 2 2 0 bZIP transcription factor DUF126 PF01989.16 gi|88602332|ref|YP_502510.1| - 5.5e-34 115.8 0.3 8.7e-34 115.2 0.3 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain DUF475 PF04332.15 gi|88602334|ref|YP_502512.1| - 8.5e-49 166.9 11.8 1e-48 166.7 11.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|88602334|ref|YP_502512.1| - 4.6e-19 68.8 13.0 1.2e-09 38.1 9.0 2.1 1 1 1 2 2 2 2 Integral membrane protein TerC family Serinc PF03348.15 gi|88602334|ref|YP_502512.1| - 1.9 7.3 8.4 3.3 6.5 8.4 1.4 1 0 0 1 1 1 0 Serine incorporator (Serinc) DUF4491 PF14898.6 gi|88602334|ref|YP_502512.1| - 4.2 7.9 15.7 0.12 12.8 2.3 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4491) DNA_gyraseB PF00204.25 gi|88602335|ref|YP_502513.1| - 3.7e-61 205.6 0.8 7.6e-61 204.6 0.8 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|88602335|ref|YP_502513.1| - 3.2e-28 97.7 0.1 6.1e-28 96.8 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|88602335|ref|YP_502513.1| - 1.3e-21 77.2 0.2 1.9e-20 73.4 0.1 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|88602335|ref|YP_502513.1| - 1.2e-18 67.2 0.0 3.5e-18 65.7 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|88602335|ref|YP_502513.1| - 3.7e-05 23.6 0.0 0.0001 22.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|88602336|ref|YP_502514.1| - 2.4e-159 530.8 0.2 3e-159 530.5 0.2 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|88602336|ref|YP_502514.1| - 1.8e-74 245.0 7.6 1.6e-13 49.9 0.2 6.3 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller LEA_6 PF10714.9 gi|88602336|ref|YP_502514.1| - 0.1 12.7 0.0 3.2 7.9 0.0 2.5 2 0 0 2 2 2 0 Late embryogenesis abundant protein 18 FadA PF09403.10 gi|88602336|ref|YP_502514.1| - 0.37 11.3 6.6 0.94 10.0 6.6 1.7 1 0 0 1 1 1 0 Adhesion protein FadA Mitofilin PF09731.9 gi|88602336|ref|YP_502514.1| - 1.6 7.5 12.5 2.5 6.8 12.5 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Polbeta PF18765.1 gi|88602337|ref|YP_502515.1| - 1.9e-07 31.1 0.2 2.5e-07 30.7 0.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88602337|ref|YP_502515.1| - 0.11 12.8 0.1 0.16 12.3 0.1 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase domain DUF86 PF01934.17 gi|88602338|ref|YP_502516.1| - 4.7e-21 74.9 1.1 6e-21 74.5 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 HEPN_RiboL-PSP PF18735.1 gi|88602338|ref|YP_502516.1| - 0.005 16.8 4.0 0.0078 16.2 4.0 1.3 1 1 0 1 1 1 1 RiboL-PSP-HEPN DUF5449 PF17528.2 gi|88602338|ref|YP_502516.1| - 0.074 12.8 0.4 0.14 11.9 0.4 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5449) PAS_4 PF08448.10 gi|88602339|ref|YP_502517.1| - 3.5e-40 136.7 0.4 1.2e-07 31.9 0.0 5.9 5 1 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|88602339|ref|YP_502517.1| - 1.8e-35 121.3 4.6 3.7e-08 33.6 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|88602339|ref|YP_502517.1| - 5.1e-33 113.4 2.7 1.2e-10 41.4 0.0 6.0 6 1 0 6 6 6 5 PAS fold PAS_8 PF13188.7 gi|88602339|ref|YP_502517.1| - 1.4e-28 98.3 0.2 1.4e-06 28.1 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|88602339|ref|YP_502517.1| - 1e-16 61.0 0.6 2.3e-10 40.6 0.0 4.7 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|88602339|ref|YP_502517.1| - 5.6e-11 42.9 0.2 1.7e-10 41.4 0.1 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|88602339|ref|YP_502517.1| - 3.8e-10 39.9 4.7 3e-07 30.6 0.0 5.1 4 3 0 4 4 4 1 PAS fold Response_reg PF00072.24 gi|88602339|ref|YP_502517.1| - 2.6e-09 37.2 0.0 8.1e-09 35.6 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_12 PF18095.1 gi|88602339|ref|YP_502517.1| - 0.00017 21.2 0.2 0.0061 16.2 0.0 3.2 3 0 0 3 3 3 1 UPF0242 C-terminal PAS-like domain PAS_11 PF14598.6 gi|88602339|ref|YP_502517.1| - 0.017 15.2 0.3 1.3 9.2 0.0 3.7 3 1 0 3 3 3 0 PAS domain ParBc_2 PF08857.11 gi|88602339|ref|YP_502517.1| - 0.059 13.5 0.4 0.23 11.5 0.2 2.0 2 0 0 2 2 2 0 Putative ParB-like nuclease MEKHLA PF08670.11 gi|88602339|ref|YP_502517.1| - 0.084 12.8 0.0 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 MEKHLA domain PNP_UDP_1 PF01048.20 gi|88602340|ref|YP_502518.1| - 4.8e-29 101.3 0.0 5.4e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily HhH-GPD PF00730.25 gi|88602341|ref|YP_502519.1| - 2e-21 76.5 0.0 2.8e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|88602341|ref|YP_502519.1| - 9e-07 28.5 0.0 2e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|88602341|ref|YP_502519.1| - 2.7e-05 24.3 7.0 5.5e-05 23.4 7.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|88602341|ref|YP_502519.1| - 0.018 15.6 0.0 0.71 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain AA_kinase PF00696.28 gi|88602342|ref|YP_502520.1| - 1.6e-25 90.1 1.1 4.7e-25 88.6 1.1 1.6 1 1 0 1 1 1 1 Amino acid kinase family Radical_SAM PF04055.21 gi|88602343|ref|YP_502521.1| - 4.4e-19 69.5 0.0 1.4e-18 67.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88602343|ref|YP_502521.1| - 0.02 15.2 0.5 0.074 13.3 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Mut7-C PF01927.16 gi|88602344|ref|YP_502522.1| - 6.1e-27 94.5 0.0 7.4e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|88602344|ref|YP_502522.1| - 8.4e-06 25.5 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Rpr2 PF04032.16 gi|88602344|ref|YP_502522.1| - 0.01 16.1 0.1 0.082 13.2 0.1 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain PIN_10 PF18478.1 gi|88602344|ref|YP_502522.1| - 0.012 15.8 0.0 0.02 15.1 0.0 1.4 1 1 0 1 1 1 0 PIN like domain zf-ribbon_3 PF13248.6 gi|88602344|ref|YP_502522.1| - 0.023 14.1 1.2 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|88602344|ref|YP_502522.1| - 0.047 13.6 0.3 3.7 7.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HTH_24 PF13412.6 gi|88602345|ref|YP_502523.1| - 1.9e-08 33.7 1.0 5.9e-08 32.1 0.4 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|88602345|ref|YP_502523.1| - 1.7e-05 24.7 0.0 3.6e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88602345|ref|YP_502523.1| - 4.6e-05 23.2 0.3 9.4e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|88602345|ref|YP_502523.1| - 0.00014 21.7 0.0 0.00038 20.3 0.0 1.7 2 1 0 2 2 2 1 MarR family MarR PF01047.22 gi|88602345|ref|YP_502523.1| - 0.00054 19.8 0.1 0.0012 18.7 0.1 1.6 1 0 0 1 1 1 1 MarR family z-alpha PF02295.17 gi|88602345|ref|YP_502523.1| - 0.00069 19.6 0.2 0.007 16.4 0.0 2.1 2 0 0 2 2 2 1 Adenosine deaminase z-alpha domain HTH_Crp_2 PF13545.6 gi|88602345|ref|YP_502523.1| - 0.0013 18.7 0.4 0.0027 17.7 0.4 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|88602345|ref|YP_502523.1| - 0.0025 18.5 0.0 0.004 17.8 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_34 PF13601.6 gi|88602345|ref|YP_502523.1| - 0.0047 17.1 0.0 0.0073 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|88602345|ref|YP_502523.1| - 0.021 14.7 0.0 0.049 13.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.16 gi|88602345|ref|YP_502523.1| - 0.027 13.8 0.0 0.034 13.4 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family B-block_TFIIIC PF04182.12 gi|88602345|ref|YP_502523.1| - 0.035 14.2 0.1 0.1 12.8 0.1 1.6 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|88602345|ref|YP_502523.1| - 0.047 13.6 0.2 0.12 12.4 0.2 1.7 1 0 0 1 1 1 0 HTH domain RNA_pol_Rpc34 PF05158.12 gi|88602345|ref|YP_502523.1| - 0.089 12.2 0.2 0.15 11.4 0.2 1.4 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit Cpn10 PF00166.21 gi|88602346|ref|YP_502524.1| - 1.8e-25 88.8 0.6 1.9e-25 88.7 0.6 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit DUF2124 PF09897.9 gi|88602346|ref|YP_502524.1| - 0.037 13.9 0.0 0.041 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Ribosomal_L18A PF01775.17 gi|88602346|ref|YP_502524.1| - 0.058 13.5 0.0 0.059 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Cpn60_TCP1 PF00118.24 gi|88602347|ref|YP_502525.1| - 1.7e-96 323.8 24.6 3.4e-96 322.8 24.6 1.4 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Arrestin_N PF00339.29 gi|88602347|ref|YP_502525.1| - 0.16 12.0 0.4 0.33 11.0 0.4 1.4 1 0 0 1 1 1 0 Arrestin (or S-antigen), N-terminal domain DUF3169 PF11368.8 gi|88602348|ref|YP_502526.1| - 0.0057 16.2 0.4 0.0062 16.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) Iron_permease PF04120.12 gi|88602348|ref|YP_502526.1| - 0.0073 16.1 0.1 0.0084 15.9 0.1 1.1 1 0 0 1 1 1 1 Low affinity iron permease TRIQK PF15168.6 gi|88602348|ref|YP_502526.1| - 0.01 15.7 0.4 0.014 15.3 0.3 1.3 1 1 0 1 1 1 0 Triple QxxK/R motif-containing protein family DUF4396 PF14342.6 gi|88602348|ref|YP_502526.1| - 0.013 15.9 0.9 0.014 15.7 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF1772 PF08592.11 gi|88602348|ref|YP_502526.1| - 0.017 15.5 0.0 0.018 15.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) TMEM125 PF15109.6 gi|88602348|ref|YP_502526.1| - 0.023 15.0 0.5 0.027 14.8 0.5 1.1 1 0 0 1 1 1 0 TMEM125 protein family DUF3149 PF11346.8 gi|88602348|ref|YP_502526.1| - 0.027 14.1 6.8 0.12 12.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) Peptidase_U4 PF03419.13 gi|88602348|ref|YP_502526.1| - 0.03 13.6 1.3 0.031 13.6 1.3 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF2427 PF10348.9 gi|88602348|ref|YP_502526.1| - 0.062 13.1 0.1 0.072 12.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) Ni_hydr_CYTB PF01292.20 gi|88602348|ref|YP_502526.1| - 0.066 12.8 0.5 0.096 12.3 0.5 1.3 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 Peptidase_S8 PF00082.22 gi|88602349|ref|YP_502527.1| - 6.3e-23 81.5 2.0 1e-22 80.8 2.0 1.2 1 0 0 1 1 1 1 Subtilase family Peptidase_S8 PF00082.22 gi|88602350|ref|YP_502528.1| - 2.4e-15 56.6 0.4 1.1e-13 51.2 0.0 2.8 1 1 1 2 2 2 1 Subtilase family DUF5643 PF18705.1 gi|88602350|ref|YP_502528.1| - 0.082 12.9 0.0 0.31 11.0 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5643) AIRS_C PF02769.22 gi|88602351|ref|YP_502529.1| - 4.9e-16 59.2 0.5 1.1e-15 58.1 0.5 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|88602351|ref|YP_502529.1| - 6.4e-07 29.9 2.1 1.5e-06 28.8 2.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|88602352|ref|YP_502530.1| - 5.8e-42 143.5 0.4 6.7e-28 97.8 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|88602352|ref|YP_502530.1| - 1.7e-14 54.1 0.0 4.1e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|88602352|ref|YP_502530.1| - 2.9e-14 53.5 0.1 1.4e-08 35.3 0.0 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain Propep_M14 PF02244.16 gi|88602352|ref|YP_502530.1| - 0.22 11.9 0.0 0.57 10.6 0.0 1.6 1 0 0 1 1 1 0 Carboxypeptidase activation peptide GATase_5 PF13507.6 gi|88602353|ref|YP_502531.1| - 2.4e-74 249.7 0.0 3e-74 249.4 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|88602353|ref|YP_502531.1| - 0.00072 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|88602353|ref|YP_502531.1| - 0.0052 16.6 0.0 0.023 14.5 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family Creatininase PF02633.14 gi|88602353|ref|YP_502531.1| - 0.033 13.6 0.0 0.076 12.5 0.0 1.4 1 1 0 1 1 1 0 Creatinine amidohydrolase GATase PF00117.28 gi|88602353|ref|YP_502531.1| - 0.049 13.4 0.0 0.13 12.0 0.0 1.7 1 1 0 1 1 1 0 Glutamine amidotransferase class-I DUF1214 PF06742.11 gi|88602354|ref|YP_502532.1| - 3.6e-35 120.7 0.0 7.1e-35 119.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF1254 PF06863.12 gi|88602354|ref|YP_502532.1| - 3.3e-34 117.8 0.1 7.4e-34 116.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) PEGA PF08308.11 gi|88602357|ref|YP_502535.1| - 1.9e-12 46.9 0.0 3.4e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 PEGA domain PEGA PF08308.11 gi|88602358|ref|YP_502536.1| - 2.8e-10 39.9 0.2 5.6e-10 39.0 0.2 1.5 1 0 0 1 1 1 1 PEGA domain CarboxypepD_reg PF13620.6 gi|88602358|ref|YP_502536.1| - 0.0019 18.5 0.1 0.0062 16.8 0.0 1.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88602358|ref|YP_502536.1| - 0.043 13.8 0.1 0.13 12.3 0.1 1.7 1 1 0 1 1 1 0 CarboxypepD_reg-like domain HEPN PF05168.14 gi|88602359|ref|YP_502537.1| - 3.3e-12 46.6 0.0 3.6e-12 46.4 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NCE101 PF11654.8 gi|88602359|ref|YP_502537.1| - 0.11 12.3 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Non-classical export protein 1 PAS_9 PF13426.7 gi|88602360|ref|YP_502538.1| - 0.00089 19.5 0.4 0.01 16.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|88602360|ref|YP_502538.1| - 0.0017 18.4 0.0 0.0043 17.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88602360|ref|YP_502538.1| - 0.0045 17.0 0.0 0.013 15.4 0.0 1.8 1 1 1 2 2 2 1 PAS fold DDE_Tnp_1 PF01609.21 gi|88602361|ref|YP_502539.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88602361|ref|YP_502539.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88602361|ref|YP_502539.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) PAS_9 PF13426.7 gi|88602362|ref|YP_502540.1| - 4.4e-06 26.9 0.1 7.6e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88602362|ref|YP_502540.1| - 3.2e-05 23.9 0.0 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold HTH_24 PF13412.6 gi|88602362|ref|YP_502540.1| - 7.6e-05 22.2 0.1 0.00015 21.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Mnd1 PF03962.15 gi|88602362|ref|YP_502540.1| - 0.00077 19.7 0.0 0.0016 18.7 0.0 1.6 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_IclR PF09339.10 gi|88602362|ref|YP_502540.1| - 0.00089 19.0 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TBPIP PF07106.13 gi|88602362|ref|YP_502540.1| - 0.0014 18.5 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain MarR_2 PF12802.7 gi|88602362|ref|YP_502540.1| - 0.0034 17.3 0.0 0.0056 16.5 0.0 1.2 1 0 0 1 1 1 1 MarR family NUMOD1 PF07453.13 gi|88602362|ref|YP_502540.1| - 0.016 15.4 0.2 0.034 14.4 0.2 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_11 PF08279.12 gi|88602362|ref|YP_502540.1| - 0.033 14.1 0.2 0.075 13.0 0.2 1.5 1 0 0 1 1 1 0 HTH domain PAS_7 PF12860.7 gi|88602362|ref|YP_502540.1| - 0.04 14.1 0.0 1.1 9.5 0.1 2.1 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.7 gi|88602362|ref|YP_502540.1| - 0.05 13.6 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 PAS domain GntR PF00392.21 gi|88602362|ref|YP_502540.1| - 0.057 13.1 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|88602362|ref|YP_502540.1| - 0.072 13.0 0.3 0.12 12.3 0.3 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|88602362|ref|YP_502540.1| - 0.14 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PAS_4 PF08448.10 gi|88602362|ref|YP_502540.1| - 0.17 12.1 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 PAS fold HTH_20 PF12840.7 gi|88602363|ref|YP_502541.1| - 2.4e-08 33.9 0.0 4.6e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88602363|ref|YP_502541.1| - 2.1e-06 27.5 0.1 6.4e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|88602363|ref|YP_502541.1| - 0.0017 18.3 0.8 0.049 13.6 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|88602363|ref|YP_502541.1| - 0.0023 18.0 0.1 0.0088 16.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|88602363|ref|YP_502541.1| - 0.054 13.6 0.1 0.25 11.5 0.0 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain TSNAXIP1_N PF15739.5 gi|88602363|ref|YP_502541.1| - 0.27 11.6 2.2 7.7 6.9 0.4 3.0 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus MTH865 PF07747.11 gi|88602364|ref|YP_502542.1| - 2e-28 97.9 0.1 2.3e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Methyltransf_25 PF13649.6 gi|88602365|ref|YP_502543.1| - 9.1e-17 61.6 0.0 1.4e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602365|ref|YP_502543.1| - 2.7e-16 60.0 0.0 4.4e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602365|ref|YP_502543.1| - 1.8e-10 40.6 0.0 2.7e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|88602365|ref|YP_502543.1| - 2.7e-09 37.0 0.0 3.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602365|ref|YP_502543.1| - 6.9e-07 29.9 0.0 1e-06 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88602365|ref|YP_502543.1| - 2.4e-06 27.2 0.0 3.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|88602365|ref|YP_502543.1| - 1.5e-05 24.9 0.0 2.3e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|88602365|ref|YP_502543.1| - 3.7e-05 24.7 0.0 0.00014 22.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|88602365|ref|YP_502543.1| - 4.3e-05 23.1 0.0 6.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_PK PF05891.12 gi|88602365|ref|YP_502543.1| - 0.00026 20.6 0.0 0.00033 20.2 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_4 PF02390.17 gi|88602365|ref|YP_502543.1| - 0.00046 19.7 0.0 0.0012 18.4 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|88602365|ref|YP_502543.1| - 0.0017 18.3 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|88602365|ref|YP_502543.1| - 0.0053 16.2 0.0 0.0075 15.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_8 PF05148.15 gi|88602365|ref|YP_502543.1| - 0.006 16.5 0.2 0.036 13.9 0.2 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.19 gi|88602365|ref|YP_502543.1| - 0.0088 16.2 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase NodS PF05401.11 gi|88602365|ref|YP_502543.1| - 0.016 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) CMAS PF02353.20 gi|88602365|ref|YP_502543.1| - 0.064 12.5 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|88602365|ref|YP_502543.1| - 0.088 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|88602365|ref|YP_502543.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F GidB PF02527.15 gi|88602365|ref|YP_502543.1| - 0.14 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_15 PF09445.10 gi|88602365|ref|YP_502543.1| - 0.2 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Lon_2 PF13337.6 gi|88602367|ref|YP_502545.1| - 4.8e-180 599.0 0.0 5.6e-180 598.7 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease ChlI PF13541.6 gi|88602367|ref|YP_502545.1| - 4.4e-05 23.3 0.7 9.9e-05 22.2 0.1 1.9 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase Lon_C PF05362.13 gi|88602367|ref|YP_502545.1| - 0.00014 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain IstB_IS21 PF01695.17 gi|88602367|ref|YP_502545.1| - 0.054 13.2 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein PglZ PF08665.12 gi|88602368|ref|YP_502546.1| - 5.5e-09 36.4 0.2 2e-07 31.3 0.2 2.3 1 1 0 1 1 1 1 PglZ domain DUF4276 PF14103.6 gi|88602369|ref|YP_502547.1| - 4.2e-48 164.0 0.0 4.7e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) AAA_21 PF13304.6 gi|88602370|ref|YP_502548.1| - 6.4e-28 98.4 2.3 2.9e-27 96.3 2.3 1.9 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88602370|ref|YP_502548.1| - 3.2e-24 86.3 0.2 3e-14 53.5 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|88602370|ref|YP_502548.1| - 2.8e-12 46.5 0.0 1.9e-10 40.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|88602370|ref|YP_502548.1| - 3.9e-12 46.1 0.1 1.2e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|88602370|ref|YP_502548.1| - 8.6e-06 26.3 0.0 0.00018 22.0 0.0 2.4 1 1 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|88602370|ref|YP_502548.1| - 0.0038 17.7 0.1 0.007 16.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88602370|ref|YP_502548.1| - 0.0074 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain N6_Mtase PF02384.16 gi|88602371|ref|YP_502549.1| - 1.1e-08 34.8 0.0 4.1e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.18 gi|88602371|ref|YP_502549.1| - 0.00023 20.9 0.0 0.26 11.0 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|88602371|ref|YP_502549.1| - 0.036 13.5 0.0 0.077 12.4 0.0 1.5 1 0 0 1 1 1 0 RRNA methyltransferase AviRa UPF0175 PF03683.13 gi|88602372|ref|YP_502550.1| - 9.1e-23 79.8 0.0 1.1e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) AAA_16 PF13191.6 gi|88602373|ref|YP_502551.1| - 0.00015 22.2 1.2 0.0086 16.5 0.5 3.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|88602373|ref|YP_502551.1| - 0.0005 20.4 0.5 0.1 12.9 0.1 3.8 3 1 1 4 4 4 1 AAA domain ATPase_2 PF01637.18 gi|88602373|ref|YP_502551.1| - 0.017 15.0 0.1 0.13 12.1 0.1 2.5 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea DUF1788 PF08747.11 gi|88602374|ref|YP_502552.1| - 2.9e-09 37.0 0.0 3.6e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Hex_IIIa PF02455.16 gi|88602374|ref|YP_502552.1| - 0.037 12.8 0.0 0.045 12.5 0.0 1.1 1 0 0 1 1 1 0 Hexon-associated protein (IIIa) DUF368 PF04018.13 gi|88602374|ref|YP_502552.1| - 0.16 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) DUF1819 PF08849.11 gi|88602375|ref|YP_502553.1| - 0.0002 21.2 0.1 0.00064 19.6 0.0 1.7 2 0 0 2 2 2 1 Putative inner membrane protein (DUF1819) AAA_29 PF13555.6 gi|88602380|ref|YP_502558.1| - 0.0016 18.1 0.0 0.0042 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2197 PF09963.9 gi|88602380|ref|YP_502558.1| - 0.016 15.4 2.5 0.016 15.4 2.5 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-SNAP50_C PF12251.8 gi|88602380|ref|YP_502558.1| - 0.017 14.8 0.8 0.017 14.8 0.8 2.3 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal ABC_tran PF00005.27 gi|88602380|ref|YP_502558.1| - 0.03 14.8 0.0 0.13 12.8 0.0 2.0 2 0 0 2 2 2 0 ABC transporter Anophelin PF10731.9 gi|88602380|ref|YP_502558.1| - 2.5 8.0 8.0 6.8 6.6 8.0 1.8 1 0 0 1 1 1 0 Thrombin inhibitor from mosquito Zn_Tnp_IS1595 PF12760.7 gi|88602380|ref|YP_502558.1| - 6.6 6.8 6.3 11 6.1 2.6 3.2 3 0 0 3 3 3 0 Transposase zinc-ribbon domain MFS_1 PF07690.16 gi|88602382|ref|YP_502560.1| - 2.5e-13 49.7 50.3 1.3e-06 27.6 24.6 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.8 gi|88602382|ref|YP_502560.1| - 0.06 12.0 14.0 0.59 8.7 1.9 2.7 2 1 1 3 3 3 0 Vacuole effluxer Atg22 like TMEMspv1-c74-12 PF11044.8 gi|88602382|ref|YP_502560.1| - 0.45 10.5 3.1 0.25 11.3 0.3 2.0 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein TssN PF17555.2 gi|88602382|ref|YP_502560.1| - 0.75 9.1 2.5 2.4 7.4 2.5 1.9 1 0 0 1 1 1 0 Type VI secretion system, TssN Prenyltrans PF00432.21 gi|88602383|ref|YP_502561.1| - 2.9e-05 23.7 4.7 0.18 11.6 0.1 4.3 4 0 0 4 4 4 3 Prenyltransferase and squalene oxidase repeat zinc_ribbon_2 PF13240.6 gi|88602384|ref|YP_502562.1| - 0.00024 20.7 2.0 0.00037 20.1 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|88602384|ref|YP_502562.1| - 0.0031 17.5 3.7 0.0042 17.1 3.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_4 PF14570.6 gi|88602384|ref|YP_502562.1| - 0.0041 16.9 1.9 0.0075 16.0 1.9 1.4 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.6 gi|88602384|ref|YP_502562.1| - 0.009 15.4 2.8 0.017 14.5 2.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|88602384|ref|YP_502562.1| - 0.019 15.7 2.9 0.03 15.1 2.9 1.3 1 0 0 1 1 1 0 zinc-ribbon family Zn_ribbon_17 PF17120.5 gi|88602384|ref|YP_502562.1| - 0.045 13.4 3.1 0.061 12.9 3.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type HEAT PF02985.22 gi|88602384|ref|YP_502562.1| - 0.079 13.3 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 HEAT repeat Dynamin_N PF00350.23 gi|88602385|ref|YP_502563.1| - 7.1e-29 101.0 0.3 1.8e-28 99.7 0.0 1.8 2 0 0 2 2 2 1 Dynamin family MMR_HSR1 PF01926.23 gi|88602385|ref|YP_502563.1| - 1.6e-09 37.8 0.0 5.9e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|88602385|ref|YP_502563.1| - 5.9e-09 35.7 0.0 2.3e-07 30.5 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 gi|88602385|ref|YP_502563.1| - 0.00017 21.1 0.1 0.036 13.6 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B IIGP PF05049.13 gi|88602385|ref|YP_502563.1| - 0.011 14.8 0.0 0.46 9.5 0.0 2.4 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) FtsK_SpoIIIE PF01580.18 gi|88602385|ref|YP_502563.1| - 0.016 14.5 0.0 0.045 13.1 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.23 gi|88602386|ref|YP_502564.1| - 7.4e-20 71.7 0.0 3.5e-19 69.5 0.0 2.1 2 1 0 2 2 2 1 Dynamin family MMR_HSR1 PF01926.23 gi|88602386|ref|YP_502564.1| - 2.8e-10 40.3 0.0 1.3e-09 38.2 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase IIGP PF05049.13 gi|88602386|ref|YP_502564.1| - 0.00021 20.5 0.0 0.00089 18.4 0.0 1.9 2 0 0 2 2 2 1 Interferon-inducible GTPase (IIGP) RsgA_GTPase PF03193.16 gi|88602386|ref|YP_502564.1| - 0.00039 20.4 0.0 1.4 8.8 0.0 2.9 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|88602386|ref|YP_502564.1| - 0.0071 15.9 0.0 0.49 9.9 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GlcNAc-1_reg PF18440.1 gi|88602386|ref|YP_502564.1| - 0.033 14.4 0.3 2.3 8.5 0.0 2.4 2 0 0 2 2 2 0 Putative GlcNAc-1 phosphotransferase regulatory domain AIG1 PF04548.16 gi|88602386|ref|YP_502564.1| - 0.16 11.2 0.0 0.92 8.8 0.0 2.3 3 0 0 3 3 3 0 AIG1 family SLIDE PF09111.10 gi|88602387|ref|YP_502565.1| - 0.11 12.5 0.3 2.9 7.9 0.0 2.4 1 1 1 2 2 2 0 SLIDE LURAP PF14854.6 gi|88602387|ref|YP_502565.1| - 0.12 12.3 0.1 0.23 11.4 0.0 1.6 1 1 1 2 2 2 0 Leucine rich adaptor protein CRCB PF02537.15 gi|88602388|ref|YP_502566.1| - 3.5e-17 62.5 11.8 4.6e-17 62.1 11.8 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) TRF PF08558.10 gi|88602388|ref|YP_502566.1| - 0.14 11.7 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) CRCB PF02537.15 gi|88602389|ref|YP_502567.1| - 1.1e-21 76.9 5.0 1.4e-21 76.6 5.0 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF190 PF02641.15 gi|88602390|ref|YP_502568.1| - 3.6e-33 113.8 0.5 4e-33 113.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 Enolase_C PF00113.22 gi|88602391|ref|YP_502569.1| - 2.9e-122 407.6 0.0 3.7e-122 407.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|88602391|ref|YP_502569.1| - 2.6e-54 182.9 0.1 4.2e-54 182.3 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.11 gi|88602391|ref|YP_502569.1| - 9.2e-06 25.0 0.4 2.3e-05 23.7 0.1 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.6 gi|88602391|ref|YP_502569.1| - 0.00012 21.8 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF167 PF02594.16 gi|88602392|ref|YP_502570.1| - 3.8e-22 78.2 0.0 4.8e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.6 gi|88602393|ref|YP_502571.1| - 7.5e-13 48.8 0.2 1.6e-12 47.7 0.2 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|88602393|ref|YP_502571.1| - 2.1e-05 24.8 0.0 4.7e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|88602393|ref|YP_502571.1| - 0.023 14.9 0.3 0.23 11.7 0.3 2.5 2 1 0 2 2 2 0 Toprim domain DRTGG PF07085.12 gi|88602393|ref|YP_502571.1| - 0.098 12.5 0.1 0.31 10.8 0.1 1.8 1 0 0 1 1 1 0 DRTGG domain UPF0058 PF01893.16 gi|88602394|ref|YP_502572.1| - 3.7e-33 113.7 0.9 4.2e-33 113.5 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 RimK PF08443.11 gi|88602395|ref|YP_502573.1| - 1.6e-24 86.6 0.0 2.5e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|88602395|ref|YP_502573.1| - 9.2e-11 41.5 0.6 0.0011 18.3 0.0 3.1 2 1 1 3 3 3 3 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|88602395|ref|YP_502573.1| - 3.1e-09 37.1 0.0 4.3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|88602395|ref|YP_502573.1| - 2.1e-07 30.5 0.0 2.3e-06 27.1 0.0 2.1 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|88602395|ref|YP_502573.1| - 0.0014 18.0 0.0 0.079 12.2 0.0 2.4 1 1 0 2 2 2 1 YheC/D like ATP-grasp GSP_synth PF03738.14 gi|88602395|ref|YP_502573.1| - 0.012 14.8 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp R2K_3 PF14243.6 gi|88602395|ref|YP_502573.1| - 0.037 14.0 0.1 0.071 13.1 0.1 1.5 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Radical_SAM PF04055.21 gi|88602396|ref|YP_502574.1| - 1e-19 71.5 0.7 7.3e-19 68.8 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88602396|ref|YP_502574.1| - 2.8e-07 30.7 0.2 3.8e-05 23.8 0.0 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88602396|ref|YP_502574.1| - 1.1e-06 29.0 1.3 1.4e-05 25.3 0.0 2.9 2 1 1 3 3 3 1 4Fe-4S single cluster domain Spore_YhaL PF14147.6 gi|88602396|ref|YP_502574.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Sporulation protein YhaL CarS-like PF01864.17 gi|88602397|ref|YP_502575.1| - 4.7e-51 173.2 7.0 5.9e-51 172.9 7.0 1.1 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|88602397|ref|YP_502575.1| - 9.5e-09 35.4 0.4 9.5e-09 35.4 0.4 1.8 2 0 0 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.27 gi|88602398|ref|YP_502576.1| - 2.1e-13 50.1 1.9 2.9e-13 49.7 1.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HEM4 PF02602.15 gi|88602398|ref|YP_502576.1| - 0.061 12.7 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD NHL PF01436.21 gi|88602399|ref|YP_502577.1| - 1.2e-08 34.5 0.4 0.00096 19.1 0.1 2.9 2 1 0 2 2 2 2 NHL repeat SGL PF08450.12 gi|88602399|ref|YP_502577.1| - 0.00065 19.4 0.0 0.0041 16.8 0.0 2.0 1 1 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region DUF5128 PF17170.4 gi|88602399|ref|YP_502577.1| - 0.0043 16.2 0.0 1.9 7.5 0.0 2.5 2 0 0 2 2 2 2 6-bladed beta-propeller Phytase-like PF13449.6 gi|88602399|ref|YP_502577.1| - 0.015 15.3 0.0 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Esterase-like activity of phytase DUF3618 PF12277.8 gi|88602399|ref|YP_502577.1| - 0.025 14.8 0.1 0.043 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) DUF4710 PF15828.5 gi|88602399|ref|YP_502577.1| - 0.16 12.1 0.3 0.35 11.0 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4710) Methyltransf_11 PF08241.12 gi|88602400|ref|YP_502578.1| - 8.1e-16 58.5 0.0 1.8e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602400|ref|YP_502578.1| - 8.8e-14 52.0 0.0 2e-13 50.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602400|ref|YP_502578.1| - 8.4e-13 48.4 0.0 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602400|ref|YP_502578.1| - 2e-10 40.7 0.0 2.7e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602400|ref|YP_502578.1| - 2.9e-09 37.5 0.0 5.6e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602400|ref|YP_502578.1| - 1e-08 34.8 0.0 2.2e-08 33.7 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|88602400|ref|YP_502578.1| - 0.00023 21.0 0.0 0.00037 20.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|88602400|ref|YP_502578.1| - 0.039 13.5 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW AAA-ATPase_like PF09820.9 gi|88602401|ref|YP_502579.1| - 5e-102 341.1 1.4 1.5e-101 339.5 1.6 1.7 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602401|ref|YP_502579.1| - 1.9e-32 111.3 0.0 3.5e-32 110.4 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PEMT PF04191.13 gi|88602401|ref|YP_502579.1| - 0.15 12.5 0.1 0.9 10.0 0.0 2.1 2 0 0 2 2 2 0 Phospholipid methyltransferase GARS_A PF01071.19 gi|88602402|ref|YP_502580.1| - 3.5e-58 196.6 0.0 5.4e-58 196.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|88602402|ref|YP_502580.1| - 1.9e-25 89.4 0.2 5e-25 88.1 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|88602402|ref|YP_502580.1| - 3.2e-15 56.2 0.1 2.2e-13 50.3 0.0 2.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|88602402|ref|YP_502580.1| - 3.8e-05 23.8 0.0 9.6e-05 22.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|88602402|ref|YP_502580.1| - 0.0021 17.3 0.0 0.097 11.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Shikimate_DH PF01488.20 gi|88602402|ref|YP_502580.1| - 0.071 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CPSase_L_D2 PF02786.17 gi|88602402|ref|YP_502580.1| - 0.091 12.2 0.0 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain OTCace PF00185.24 gi|88602403|ref|YP_502581.1| - 1.9e-52 177.5 0.0 2.7e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|88602403|ref|YP_502581.1| - 5.7e-51 172.4 0.1 8.5e-51 171.9 0.1 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CoA_binding_2 PF13380.6 gi|88602403|ref|YP_502581.1| - 0.00074 20.0 0.1 0.12 12.9 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain OCD_Mu_crystall PF02423.15 gi|88602403|ref|YP_502581.1| - 0.025 13.5 0.1 0.038 12.9 0.1 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family TPR_1 PF00515.28 gi|88602404|ref|YP_502582.1| - 1.1e-07 31.4 0.1 1.7e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602404|ref|YP_502582.1| - 8.5e-07 28.6 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|88602404|ref|YP_502582.1| - 8.4e-06 26.0 0.1 1e-05 25.7 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain TPR_8 PF13181.6 gi|88602404|ref|YP_502582.1| - 4.8e-05 23.2 0.0 8.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat Polbeta PF18765.1 gi|88602404|ref|YP_502582.1| - 7.2e-05 22.8 0.1 9.3e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase TPR_12 PF13424.6 gi|88602404|ref|YP_502582.1| - 0.045 14.0 0.0 0.063 13.6 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602404|ref|YP_502582.1| - 0.046 14.6 0.0 0.083 13.8 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602404|ref|YP_502582.1| - 0.061 14.0 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat LPG_synthase_TM PF03706.13 gi|88602405|ref|YP_502583.1| - 3.1e-48 164.8 29.2 3.6e-48 164.6 29.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Ribonucleas_3_3 PF14622.6 gi|88602406|ref|YP_502584.1| - 4.1e-22 78.7 0.1 4.9e-22 78.5 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|88602406|ref|YP_502584.1| - 1.1e-11 45.3 0.1 2.2e-11 44.3 0.1 1.5 1 1 0 1 1 1 1 Ribonuclease III domain Ribo_biogen_C PF04034.13 gi|88602406|ref|YP_502584.1| - 0.18 11.6 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal Fer4_20 PF14691.6 gi|88602407|ref|YP_502585.1| - 7.5e-42 141.7 0.7 1.2e-41 141.0 0.7 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|88602407|ref|YP_502585.1| - 7.9e-39 133.6 0.9 1.1e-38 133.1 0.9 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|88602407|ref|YP_502585.1| - 6.2e-14 52.3 4.0 3.1e-10 40.5 0.2 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|88602407|ref|YP_502585.1| - 7.6e-14 51.7 0.0 1.9e-09 37.2 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|88602407|ref|YP_502585.1| - 2.8e-10 40.2 5.2 1.6e-05 24.4 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|88602407|ref|YP_502585.1| - 7.9e-10 38.8 0.4 4.8e-07 29.9 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|88602407|ref|YP_502585.1| - 7.3e-09 35.2 1.8 0.0006 19.0 0.1 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|88602407|ref|YP_502585.1| - 1.2e-07 31.2 4.0 0.00019 20.7 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|88602407|ref|YP_502585.1| - 1.4e-07 31.1 4.4 4e-06 26.3 0.0 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|88602407|ref|YP_502585.1| - 2.8e-07 30.9 1.0 0.00014 22.2 0.2 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding HI0933_like PF03486.14 gi|88602407|ref|YP_502585.1| - 8.9e-07 27.9 2.8 8.6e-05 21.4 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|88602407|ref|YP_502585.1| - 1e-06 28.3 1.9 0.00091 18.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|88602407|ref|YP_502585.1| - 3.6e-05 23.1 0.2 0.00089 18.6 0.1 2.2 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.19 gi|88602407|ref|YP_502585.1| - 0.00025 20.5 0.1 0.041 13.3 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|88602407|ref|YP_502585.1| - 0.00051 19.7 3.7 0.19 11.3 1.9 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase FMO-like PF00743.19 gi|88602407|ref|YP_502585.1| - 0.0016 17.0 0.0 0.28 9.6 0.0 2.4 3 0 0 3 3 3 1 Flavin-binding monooxygenase-like YjeF_N PF03853.15 gi|88602407|ref|YP_502585.1| - 0.0016 18.3 0.1 0.31 10.9 0.0 2.5 2 0 0 2 2 2 1 YjeF-related protein N-terminus XdhC_C PF13478.6 gi|88602407|ref|YP_502585.1| - 0.0023 18.5 0.6 0.0089 16.5 0.0 2.2 3 0 0 3 3 2 1 XdhC Rossmann domain K_oxygenase PF13434.6 gi|88602407|ref|YP_502585.1| - 0.0024 17.1 0.0 0.14 11.3 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) ELFV_dehydrog PF00208.21 gi|88602407|ref|YP_502585.1| - 0.0029 17.3 0.2 1.1 9.0 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.18 gi|88602407|ref|YP_502585.1| - 0.005 16.7 1.2 1.5 8.7 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PALP PF00291.25 gi|88602407|ref|YP_502585.1| - 0.0088 15.5 0.1 0.098 12.0 0.0 2.2 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 gi|88602407|ref|YP_502585.1| - 0.017 15.7 0.2 7.4 7.2 0.1 2.8 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|88602407|ref|YP_502585.1| - 0.018 14.6 0.2 3.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|88602407|ref|YP_502585.1| - 0.031 14.5 0.3 6.1 7.1 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain PEP-utilizers PF00391.23 gi|88602407|ref|YP_502585.1| - 0.037 13.7 0.7 0.16 11.7 0.1 2.3 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain ApbA PF02558.16 gi|88602407|ref|YP_502585.1| - 0.044 13.4 0.9 0.57 9.8 0.2 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 gi|88602407|ref|YP_502585.1| - 0.046 12.6 0.8 2.4 6.9 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|88602407|ref|YP_502585.1| - 0.064 12.5 2.4 0.16 11.2 0.1 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|88602407|ref|YP_502585.1| - 0.074 13.1 0.3 5.2 7.1 0.0 2.6 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase Glyco_transf_4 PF13439.6 gi|88602407|ref|YP_502585.1| - 0.1 12.6 0.2 4.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 UDPG_MGDP_dh_N PF03721.14 gi|88602407|ref|YP_502585.1| - 0.11 12.1 0.3 0.32 10.6 0.1 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF4147 PF13660.6 gi|88602407|ref|YP_502585.1| - 0.12 11.9 0.2 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) Fer4_7 PF12838.7 gi|88602407|ref|YP_502585.1| - 0.19 12.3 0.3 0.19 12.3 0.3 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602407|ref|YP_502585.1| - 0.69 10.1 4.7 0.2 11.9 0.8 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.12 gi|88602407|ref|YP_502585.1| - 5.2 6.0 5.3 1.6 7.7 0.5 2.3 3 0 0 3 3 3 0 Lycopene cyclase protein Fer4_4 PF12800.7 gi|88602407|ref|YP_502585.1| - 7 7.4 12.8 0.14 12.7 3.6 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|88602408|ref|YP_502586.1| - 8.5e-13 47.9 4.9 1.8e-12 46.9 4.9 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|88602408|ref|YP_502586.1| - 0.01 16.4 0.0 0.031 14.9 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|88602408|ref|YP_502586.1| - 0.013 15.5 0.3 0.023 14.7 0.3 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF5591 PF17884.1 gi|88602409|ref|YP_502587.1| - 4.7e-55 185.7 0.0 7e-55 185.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|88602409|ref|YP_502587.1| - 1.7e-09 37.5 0.1 3.3e-09 36.6 0.1 1.4 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|88602409|ref|YP_502587.1| - 4.6e-07 29.3 0.1 0.00033 19.9 0.0 2.2 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase TGT PF01702.18 gi|88602410|ref|YP_502588.1| - 4.1e-75 253.1 0.0 5.4e-75 252.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|88602410|ref|YP_502588.1| - 0.028 14.3 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) Glyco_hydro_3 PF00933.21 gi|88602410|ref|YP_502588.1| - 0.046 13.1 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain AAA-ATPase_like PF09820.9 gi|88602411|ref|YP_502589.1| - 5.2e-79 265.6 1.8 6.8e-79 265.2 0.8 1.6 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602411|ref|YP_502589.1| - 6.2e-24 83.9 0.0 1.6e-23 82.6 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AMMECR1 PF01871.17 gi|88602412|ref|YP_502590.1| - 1.8e-53 180.6 0.0 2e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 FAD_binding_3 PF01494.19 gi|88602413|ref|YP_502591.1| - 1.5e-13 50.7 0.8 2.6e-10 40.1 0.1 3.0 2 1 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|88602413|ref|YP_502591.1| - 6.1e-09 35.5 0.8 7.3e-06 25.3 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|88602413|ref|YP_502591.1| - 9.6e-09 35.1 3.5 1.8e-08 34.2 3.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|88602413|ref|YP_502591.1| - 3.1e-06 26.2 0.1 5.3e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|88602413|ref|YP_502591.1| - 1e-05 25.7 0.2 3.3e-05 24.0 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|88602413|ref|YP_502591.1| - 6.6e-05 22.3 0.4 0.0002 20.7 0.2 1.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|88602413|ref|YP_502591.1| - 0.00029 20.5 2.3 0.019 14.5 0.2 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|88602413|ref|YP_502591.1| - 0.00056 19.1 0.5 0.00099 18.3 0.5 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|88602413|ref|YP_502591.1| - 0.0075 15.5 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|88602413|ref|YP_502591.1| - 0.04 12.8 1.1 4.2 6.1 0.3 2.6 1 1 1 2 2 2 0 Tryptophan halogenase SE PF08491.10 gi|88602413|ref|YP_502591.1| - 0.1 11.6 0.1 1.9 7.5 0.1 2.2 2 0 0 2 2 2 0 Squalene epoxidase Pyr_redox PF00070.27 gi|88602413|ref|YP_502591.1| - 0.11 13.0 0.1 0.25 11.9 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|88602414|ref|YP_502592.1| - 2e-13 49.5 17.3 8.4e-08 31.7 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88602414|ref|YP_502592.1| - 1.9e-09 37.0 16.7 4.9e-06 26.3 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88602414|ref|YP_502592.1| - 2.5e-09 36.8 15.7 1.1e-05 25.3 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88602414|ref|YP_502592.1| - 1.8e-08 34.9 12.2 0.00013 22.5 0.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602414|ref|YP_502592.1| - 4.6e-08 33.9 12.6 0.00083 20.2 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88602414|ref|YP_502592.1| - 6.7e-07 29.3 29.2 0.00046 20.2 18.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602414|ref|YP_502592.1| - 4.9e-06 26.6 15.3 9.9e-06 25.6 15.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602414|ref|YP_502592.1| - 6.7e-06 26.2 13.7 1.4e-05 25.2 13.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88602414|ref|YP_502592.1| - 8.5e-05 22.8 15.7 0.009 16.4 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88602414|ref|YP_502592.1| - 0.0012 19.6 24.4 0.02 15.8 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88602414|ref|YP_502592.1| - 0.0023 18.7 10.9 0.1 13.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|88602414|ref|YP_502592.1| - 0.0033 18.0 16.8 0.045 14.3 2.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602414|ref|YP_502592.1| - 0.011 16.2 17.4 0.14 12.7 2.9 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Furin-like_2 PF15913.5 gi|88602414|ref|YP_502592.1| - 0.013 15.6 5.2 0.49 10.6 0.2 2.0 1 1 1 2 2 2 0 Furin-like repeat, cysteine-rich Fer4_13 PF13370.6 gi|88602414|ref|YP_502592.1| - 0.015 15.8 15.8 0.066 13.8 3.3 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|88602414|ref|YP_502592.1| - 0.032 14.4 15.5 0.048 13.9 2.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Me-amine-dh_L PF02975.14 gi|88602414|ref|YP_502592.1| - 0.099 13.1 9.5 0.19 12.3 0.6 2.0 1 1 1 2 2 2 0 Methylamine dehydrogenase, L chain Fer4_22 PF17179.4 gi|88602414|ref|YP_502592.1| - 0.21 12.4 11.5 0.54 11.1 0.5 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF3343 PF11823.8 gi|88602414|ref|YP_502592.1| - 0.48 9.9 5.7 1.2 8.7 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) Fer4_19 PF06902.11 gi|88602414|ref|YP_502592.1| - 6.1 7.0 13.9 2.7e+02 1.7 13.9 3.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster PHP_C PF13263.6 gi|88602415|ref|YP_502593.1| - 0.009 15.7 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PAC2 PF09754.9 gi|88602416|ref|YP_502594.1| - 4.3e-45 154.3 0.0 4.9e-45 154.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|88602417|ref|YP_502595.1| - 1.5e-22 79.4 3.8 1.6e-22 79.3 3.8 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-NADH-PPase PF09297.11 gi|88602417|ref|YP_502595.1| - 0.0065 16.1 0.9 2.9 7.7 1.1 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain EIF_2_alpha PF07541.12 gi|88602418|ref|YP_502596.1| - 6.6e-23 81.0 0.0 1.2e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|88602418|ref|YP_502596.1| - 2.7e-11 43.6 0.1 4.7e-11 42.9 0.1 1.3 1 0 0 1 1 1 1 S1 RNA binding domain DUF1494 PF07379.11 gi|88602418|ref|YP_502596.1| - 0.031 14.1 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1494) Ribosomal_S27e PF01667.17 gi|88602419|ref|YP_502597.1| - 2e-24 85.1 2.4 2.1e-24 84.9 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_6 PF14599.6 gi|88602419|ref|YP_502597.1| - 0.023 14.7 2.1 0.032 14.2 2.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon HypA PF01155.19 gi|88602419|ref|YP_502597.1| - 0.037 14.0 1.2 0.042 13.9 1.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2614 PF11023.8 gi|88602419|ref|YP_502597.1| - 0.049 13.7 0.6 0.057 13.5 0.6 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_L44 PF00935.19 gi|88602420|ref|YP_502598.1| - 1.1e-25 89.9 6.3 1.3e-25 89.7 6.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Zn_Tnp_IS1595 PF12760.7 gi|88602420|ref|YP_502598.1| - 0.019 14.9 1.0 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 gi|88602420|ref|YP_502598.1| - 0.028 14.7 2.0 0.11 12.7 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Ribosomal_L33 PF00471.20 gi|88602420|ref|YP_502598.1| - 0.17 12.3 5.4 1.2 9.7 3.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L33 Sld5 PF05916.11 gi|88602421|ref|YP_502599.1| - 0.037 14.5 1.2 0.051 14.1 0.5 1.6 2 0 0 2 2 2 0 GINS complex protein DNA_primase_S PF01896.19 gi|88602422|ref|YP_502600.1| - 3e-15 56.7 0.0 3.5e-14 53.2 0.0 2.1 1 1 0 1 1 1 1 DNA primase small subunit Radical_SAM_C PF16199.5 gi|88602423|ref|YP_502601.1| - 1.2e-24 86.2 0.0 2.3e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|88602423|ref|YP_502601.1| - 2.6e-18 67.0 0.0 7.8e-18 65.4 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|88602423|ref|YP_502601.1| - 1.8e-06 28.2 0.0 4.8e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|88602423|ref|YP_502601.1| - 0.0011 18.9 0.1 0.017 15.1 0.0 2.6 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain UPF0058 PF01893.16 gi|88602424|ref|YP_502602.1| - 7.1e-20 71.1 3.6 8.2e-20 70.9 3.6 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 PRTase_1 PF11202.8 gi|88602424|ref|YP_502602.1| - 0.0054 16.0 0.1 0.0057 15.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase (PRTase) UPF0179 PF03684.13 gi|88602425|ref|YP_502603.1| - 1.8e-41 141.3 1.2 2.1e-41 141.1 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) RseC_MucC PF04246.12 gi|88602425|ref|YP_502603.1| - 0.06 13.3 0.4 0.06 13.3 0.4 1.7 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC EPF PF17181.4 gi|88602425|ref|YP_502603.1| - 0.078 13.0 4.7 0.28 11.2 0.3 2.3 2 0 0 2 2 2 0 Epidermal patterning factor proteins Fe-ADH_2 PF13685.6 gi|88602426|ref|YP_502604.1| - 1.2e-64 218.4 2.1 1.5e-64 218.1 2.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|88602426|ref|YP_502604.1| - 6.9e-22 77.7 4.7 4.8e-21 75.0 4.6 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|88602426|ref|YP_502604.1| - 3e-15 56.1 0.2 1.3e-14 54.1 0.2 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.17 gi|88602427|ref|YP_502605.1| - 3.9e-103 345.4 19.7 4.3e-103 345.2 19.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF1230 PF06799.11 gi|88602427|ref|YP_502605.1| - 0.011 15.8 0.9 0.027 14.6 0.9 1.7 1 0 0 1 1 1 0 Conserved in the green lineage and diatoms 27 PalH PF08733.10 gi|88602427|ref|YP_502605.1| - 0.22 10.5 7.8 0.28 10.2 4.2 2.2 1 1 1 2 2 2 0 PalH/RIM21 DUF962 PF06127.11 gi|88602427|ref|YP_502605.1| - 1.3 9.2 5.9 1.9 8.6 2.1 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF962) SpoIIM PF01944.17 gi|88602428|ref|YP_502606.1| - 2.7e-31 108.7 16.6 3.3e-31 108.4 16.6 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M tRNA-synt_2b PF00587.25 gi|88602429|ref|YP_502607.1| - 3.8e-27 95.4 0.0 5.9e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|88602429|ref|YP_502607.1| - 1.2e-16 60.6 0.0 2.3e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|88602429|ref|YP_502607.1| - 3.7e-11 43.1 0.2 1.3e-10 41.3 0.0 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|88602429|ref|YP_502607.1| - 0.041 14.5 0.1 0.19 12.4 0.0 2.1 2 0 0 2 2 2 0 TIR domain PhoD_N PF16655.5 gi|88602429|ref|YP_502607.1| - 0.17 12.5 0.1 0.55 10.8 0.0 1.8 2 0 0 2 2 2 0 PhoD-like phosphatase, N-terminal domain Phos_pyr_kin PF08543.12 gi|88602430|ref|YP_502608.1| - 8.1e-77 257.9 0.1 9.2e-77 257.7 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|88602430|ref|YP_502608.1| - 2.4e-07 30.4 0.0 3e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|88602430|ref|YP_502608.1| - 0.001 18.5 0.7 0.18 11.2 0.1 2.2 1 1 0 2 2 2 2 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|88602430|ref|YP_502608.1| - 0.033 13.7 0.6 0.052 13.0 0.6 1.4 1 1 0 1 1 1 0 Carbohydrate kinase PEP-utilizers_C PF02896.18 gi|88602431|ref|YP_502609.1| - 5.8e-90 301.4 0.0 1e-89 300.6 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|88602431|ref|YP_502609.1| - 3.4e-54 184.3 0.0 4e-42 144.7 0.0 3.3 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|88602431|ref|YP_502609.1| - 2.2e-27 94.6 1.2 5.8e-27 93.2 1.2 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain FANCAA PF15146.6 gi|88602432|ref|YP_502610.1| - 0.017 14.2 0.0 0.019 14.1 0.0 1.0 1 0 0 1 1 1 0 Fanconi anemia-associated FPRL1_inhibitor PF16104.5 gi|88602432|ref|YP_502610.1| - 0.037 14.2 0.3 2.5 8.3 0.1 2.2 1 1 1 2 2 2 0 Formyl peptide receptor-like 1 inhibitory protein AbiJ_NTD5 PF18865.1 gi|88602432|ref|YP_502610.1| - 0.093 12.5 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 AbiJ N-terminal domain 5 Flavin_Reduct PF01613.18 gi|88602433|ref|YP_502611.1| - 1.6e-27 96.4 0.0 2.1e-27 96.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain RNB PF00773.19 gi|88602434|ref|YP_502612.1| - 3.9e-72 243.3 0.0 4.7e-72 243.1 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|88602434|ref|YP_502612.1| - 3.1e-13 49.5 0.2 2.3e-12 46.7 0.0 2.5 3 0 0 3 3 3 1 RNase II-type exonuclease C-terminal S1 domain S1 PF00575.23 gi|88602434|ref|YP_502612.1| - 1.1e-05 25.6 0.4 0.00028 21.2 0.1 3.1 2 1 0 2 2 2 1 S1 RNA binding domain Raco_middle PF17651.1 gi|88602434|ref|YP_502612.1| - 0.00036 20.3 0.0 0.00067 19.4 0.0 1.4 1 0 0 1 1 1 1 RACo middle region AIG2_2 PF13772.6 gi|88602434|ref|YP_502612.1| - 0.0022 18.3 0.0 0.017 15.5 0.0 2.3 2 0 0 2 2 2 1 AIG2-like family STAS PF01740.21 gi|88602435|ref|YP_502613.1| - 1.8e-15 56.6 0.0 2.2e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|88602435|ref|YP_502613.1| - 3.6e-08 33.6 0.0 5e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 STAS domain PAS_9 PF13426.7 gi|88602436|ref|YP_502614.1| - 6.3e-13 48.9 0.0 5.4e-08 33.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|88602436|ref|YP_502614.1| - 0.00022 21.5 0.0 0.054 13.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|88602436|ref|YP_502614.1| - 0.0013 19.0 0.0 0.0041 17.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|88602436|ref|YP_502614.1| - 0.0015 18.5 0.1 0.21 11.6 0.0 2.9 3 1 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|88602436|ref|YP_502614.1| - 0.0061 16.6 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF98 PF01947.16 gi|88602437|ref|YP_502615.1| - 2.2e-19 69.9 0.0 3.4e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_C PF08544.13 gi|88602437|ref|YP_502615.1| - 1.5e-10 41.3 0.0 4.7e-10 39.7 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|88602437|ref|YP_502615.1| - 0.0022 18.2 0.9 0.0042 17.3 0.9 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain UTRA PF07702.13 gi|88602437|ref|YP_502615.1| - 0.036 13.9 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 UTRA domain ThiC_Rad_SAM PF01964.18 gi|88602438|ref|YP_502616.1| - 2.4e-128 428.5 2.4 2.6e-128 428.4 2.4 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family DUF2379 PF09543.10 gi|88602438|ref|YP_502616.1| - 0.036 14.2 0.0 0.087 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) AIRC PF00731.20 gi|88602438|ref|YP_502616.1| - 0.097 12.2 0.3 3.2 7.3 0.1 2.3 2 0 0 2 2 2 0 AIR carboxylase Nuc_deoxyrib_tr PF05014.15 gi|88602439|ref|YP_502617.1| - 1.9e-24 86.1 0.0 2.7e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|88602439|ref|YP_502617.1| - 4e-18 65.7 0.0 7.4e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like LDcluster4 PF18306.1 gi|88602439|ref|YP_502617.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 SLOG cluster4 family DUF523 PF04463.12 gi|88602439|ref|YP_502617.1| - 0.057 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF523) TIR_2 PF13676.6 gi|88602439|ref|YP_502617.1| - 0.14 12.7 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 TIR domain CheC PF04509.12 gi|88602440|ref|YP_502618.1| - 1.8e-08 34.1 2.4 1.8e-08 34.1 0.9 1.9 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|88602440|ref|YP_502618.1| - 1.4e-05 25.2 0.1 2.7e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX PsiE PF06146.12 gi|88602441|ref|YP_502619.1| - 6.6e-13 48.8 11.6 6.6e-13 48.8 11.6 2.3 2 1 1 3 3 3 1 Phosphate-starvation-inducible E MGAT2 PF05060.14 gi|88602441|ref|YP_502619.1| - 0.32 10.0 2.3 0.4 9.7 2.3 1.1 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) Herpes_LMP1 PF05297.11 gi|88602441|ref|YP_502619.1| - 0.58 9.3 14.5 0.73 9.0 14.5 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DHODB_Fe-S_bind PF10418.9 gi|88602442|ref|YP_502620.1| - 4.7e-11 42.3 10.0 1.1e-10 41.1 10.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|88602442|ref|YP_502620.1| - 0.0025 18.4 0.2 0.033 14.8 0.2 2.4 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|88602442|ref|YP_502620.1| - 0.069 13.5 0.0 0.19 12.1 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain DHO_dh PF01180.21 gi|88602443|ref|YP_502621.1| - 1.1e-56 192.2 0.0 1.5e-56 191.8 0.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|88602443|ref|YP_502621.1| - 1.4e-14 53.9 0.1 5e-07 29.1 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|88602443|ref|YP_502621.1| - 1.9e-07 30.8 0.0 6.6e-07 29.0 0.0 1.9 2 1 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|88602443|ref|YP_502621.1| - 9e-07 28.6 2.5 2.1e-06 27.4 2.5 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|88602443|ref|YP_502621.1| - 0.0011 18.2 0.4 0.0016 17.7 0.4 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase DUF561 PF04481.12 gi|88602443|ref|YP_502621.1| - 0.004 16.4 0.0 0.0081 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|88602443|ref|YP_502621.1| - 0.012 14.6 0.3 0.022 13.8 0.3 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|88602443|ref|YP_502621.1| - 0.029 13.2 0.1 0.076 11.8 0.0 1.7 2 0 0 2 2 2 0 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 gi|88602443|ref|YP_502621.1| - 0.038 13.4 1.0 0.15 11.5 0.1 2.3 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|88602443|ref|YP_502621.1| - 0.059 12.7 0.1 0.14 11.4 0.1 1.6 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|88602443|ref|YP_502621.1| - 0.43 9.5 2.0 0.42 9.6 0.4 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Ldh_1_N PF00056.23 gi|88602444|ref|YP_502622.1| - 1.7e-19 70.3 0.0 2.5e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|88602444|ref|YP_502622.1| - 1e-10 41.8 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain 3HCDH_N PF02737.18 gi|88602444|ref|YP_502622.1| - 0.055 13.4 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DNA_pol_B PF00136.21 gi|88602445|ref|YP_502623.1| - 3.9e-48 164.3 0.5 3.1e-47 161.3 0.9 2.1 2 1 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|88602445|ref|YP_502623.1| - 1.7e-27 96.5 0.0 5.3e-27 94.9 0.0 1.9 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|88602445|ref|YP_502623.1| - 0.027 14.5 0.0 0.29 11.1 0.0 2.8 3 1 0 3 3 3 0 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|88602445|ref|YP_502623.1| - 0.044 13.5 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB GATase_3 PF07685.14 gi|88602446|ref|YP_502624.1| - 2.1e-34 118.9 0.0 3e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|88602446|ref|YP_502624.1| - 7.4e-16 58.6 0.0 6.2e-10 39.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain CbiA PF01656.23 gi|88602446|ref|YP_502624.1| - 1.5e-13 50.9 0.0 2.8e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|88602446|ref|YP_502624.1| - 0.006 15.9 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain SNO PF01174.19 gi|88602446|ref|YP_502624.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PRK PF00485.18 gi|88602446|ref|YP_502624.1| - 0.046 13.4 0.4 1 9.0 0.1 2.2 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.14 gi|88602446|ref|YP_502624.1| - 0.052 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|88602446|ref|YP_502624.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DHH PF01368.20 gi|88602447|ref|YP_502625.1| - 6.2e-28 97.0 0.5 9.7e-28 96.4 0.5 1.3 1 0 0 1 1 1 1 DHH family DRTGG PF07085.12 gi|88602447|ref|YP_502625.1| - 2.7e-15 56.0 0.3 6.4e-15 54.8 0.3 1.7 1 0 0 1 1 1 1 DRTGG domain DHHA2 PF02833.14 gi|88602447|ref|YP_502625.1| - 2e-13 50.7 0.0 3.7e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 DHHA2 domain CBS PF00571.28 gi|88602447|ref|YP_502625.1| - 3.8e-13 49.7 0.2 4.3e-05 23.9 0.0 3.2 2 0 0 2 2 2 2 CBS domain Hpr_kinase_N PF02603.16 gi|88602447|ref|YP_502625.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus SHOCT PF09851.9 gi|88602448|ref|YP_502626.1| - 0.0016 18.1 0.4 0.003 17.2 0.4 1.5 1 0 0 1 1 1 1 Short C-terminal domain Sar8_2 PF03058.14 gi|88602448|ref|YP_502626.1| - 0.16 12.5 0.0 2.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Sar8.2 family Wzy_C PF04932.15 gi|88602448|ref|YP_502626.1| - 1.6 8.4 8.7 0.6 9.7 4.0 2.4 1 1 1 2 2 2 0 O-Antigen ligase DUF2304 PF10066.9 gi|88602448|ref|YP_502626.1| - 6.4 7.0 7.3 27 5.1 1.1 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) UvrA_DNA-bind PF17755.1 gi|88602449|ref|YP_502627.1| - 2.1e-32 111.8 0.2 6.5e-31 106.9 0.1 3.0 3 0 0 3 3 2 1 UvrA DNA-binding domain UvrA_inter PF17760.1 gi|88602449|ref|YP_502627.1| - 2.6e-30 104.7 0.2 1.9e-29 101.9 0.1 2.4 2 0 0 2 2 2 1 UvrA interaction domain ABC_tran PF00005.27 gi|88602449|ref|YP_502627.1| - 6e-21 75.4 1.1 1.4e-08 35.4 0.2 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|88602449|ref|YP_502627.1| - 1.4e-11 44.3 0.3 0.15 11.5 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88602449|ref|YP_502627.1| - 3.7e-09 36.2 0.1 0.0019 17.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88602449|ref|YP_502627.1| - 4.1e-08 33.8 0.3 0.01 16.2 0.0 3.3 4 1 0 4 4 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|88602449|ref|YP_502627.1| - 4.5e-08 33.3 8.4 0.00081 19.3 0.0 4.5 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|88602449|ref|YP_502627.1| - 1.2e-07 31.7 0.0 0.0015 18.5 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase BCA_ABC_TP_C PF12399.8 gi|88602449|ref|YP_502627.1| - 6.5e-07 29.1 5.3 0.0049 16.8 0.6 2.8 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.6 gi|88602449|ref|YP_502627.1| - 3e-06 26.9 0.0 0.089 12.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|88602449|ref|YP_502627.1| - 4.1e-05 23.9 0.8 0.11 12.8 0.0 3.8 4 0 0 4 4 4 1 AAA domain ATPase PF06745.13 gi|88602449|ref|YP_502627.1| - 5.8e-05 22.6 0.1 0.26 10.6 0.0 2.7 2 0 0 2 2 2 2 KaiC DnaJ_CXXCXGXG PF00684.19 gi|88602449|ref|YP_502627.1| - 9.2e-05 22.7 5.5 0.037 14.4 0.4 3.6 3 0 0 3 3 3 1 DnaJ central domain AAA_14 PF13173.6 gi|88602449|ref|YP_502627.1| - 0.0002 21.4 0.0 1.4 9.0 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.6 gi|88602449|ref|YP_502627.1| - 0.00021 21.8 0.0 0.4 11.2 0.0 3.1 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|88602449|ref|YP_502627.1| - 0.00038 20.4 0.1 0.3 11.0 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|88602449|ref|YP_502627.1| - 0.0021 18.2 0.0 0.87 9.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|88602449|ref|YP_502627.1| - 0.0025 17.1 0.1 0.52 9.5 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|88602449|ref|YP_502627.1| - 0.0036 17.1 0.0 0.65 9.7 0.0 2.8 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 gi|88602449|ref|YP_502627.1| - 0.0059 16.6 0.0 0.85 9.5 0.0 2.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|88602449|ref|YP_502627.1| - 0.0059 15.7 0.2 1.3 8.0 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|88602449|ref|YP_502627.1| - 0.0071 16.1 10.9 1.3 8.6 0.0 5.1 5 1 1 6 6 6 1 AAA ATPase domain cobW PF02492.19 gi|88602449|ref|YP_502627.1| - 0.0094 15.6 0.2 5.3 6.6 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|88602449|ref|YP_502627.1| - 0.017 15.6 12.0 0.48 10.9 0.5 3.5 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|88602449|ref|YP_502627.1| - 0.031 14.0 0.2 15 5.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain Sigma54_activat PF00158.26 gi|88602449|ref|YP_502627.1| - 0.038 13.7 0.0 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA12 PF10443.9 gi|88602449|ref|YP_502627.1| - 0.13 11.0 0.0 4.5 5.9 0.0 2.3 2 0 0 2 2 2 0 RNA12 protein MMR_HSR1 PF01926.23 gi|88602449|ref|YP_502627.1| - 0.15 12.2 0.2 46 4.1 0.0 3.3 4 0 0 4 4 3 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|88602449|ref|YP_502627.1| - 0.15 12.0 0.0 13 5.7 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MeaB PF03308.16 gi|88602449|ref|YP_502627.1| - 0.15 11.0 0.3 5.6 5.9 0.0 2.6 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|88602449|ref|YP_502627.1| - 0.16 11.5 0.1 9.6 5.7 0.1 2.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|88602449|ref|YP_502627.1| - 0.16 11.6 0.1 18 5.0 0.0 2.7 3 0 0 3 3 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|88602449|ref|YP_502627.1| - 0.22 11.6 8.4 0.17 12.0 0.3 3.5 3 0 0 3 3 3 0 Zinc ribbon domain FANCL_C PF11793.8 gi|88602449|ref|YP_502627.1| - 4.3 7.6 4.9 1.3e+02 2.8 0.0 3.6 3 1 0 3 3 3 0 FANCL C-terminal domain UvrC_HhH_N PF08459.11 gi|88602450|ref|YP_502628.1| - 4.5e-53 179.3 0.0 1.1e-52 178.1 0.0 1.7 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|88602450|ref|YP_502628.1| - 2.1e-11 43.9 0.8 4.8e-11 42.8 0.1 2.0 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.19 gi|88602450|ref|YP_502628.1| - 5.9e-08 32.2 4.2 5.9e-08 32.2 4.2 1.9 2 0 0 2 2 2 1 UvrB/uvrC motif UvrB_inter PF17757.1 gi|88602451|ref|YP_502629.1| - 1.1e-28 99.2 0.3 3.3e-28 97.7 0.3 1.8 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|88602451|ref|YP_502629.1| - 9.6e-24 83.0 0.4 2e-23 82.0 0.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|88602451|ref|YP_502629.1| - 5.3e-16 58.9 0.2 1.4e-15 57.6 0.2 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88602451|ref|YP_502629.1| - 7.5e-12 45.6 0.0 9.3e-11 42.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|88602451|ref|YP_502629.1| - 1.4e-10 40.6 1.0 6.7e-10 38.4 1.0 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_30 PF13604.6 gi|88602451|ref|YP_502629.1| - 0.0003 20.5 0.0 0.0024 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|88602451|ref|YP_502629.1| - 0.0032 17.8 0.3 2 8.7 0.0 3.2 2 1 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|88602451|ref|YP_502629.1| - 0.0092 15.8 0.0 0.079 12.7 0.0 2.5 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|88602451|ref|YP_502629.1| - 0.016 15.5 0.1 0.12 12.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain Kinesin PF00225.23 gi|88602451|ref|YP_502629.1| - 0.03 13.2 0.0 0.052 12.5 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain Microtub_bd PF16796.5 gi|88602451|ref|YP_502629.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Microtubule binding SWI2_SNF2 PF18766.1 gi|88602451|ref|YP_502629.1| - 0.092 12.4 0.2 0.64 9.6 0.0 2.5 3 0 0 3 3 3 0 SWI2/SNF2 ATPase UvrD-helicase PF00580.21 gi|88602451|ref|YP_502629.1| - 0.1 12.1 1.7 5.4 6.4 0.2 2.4 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF87 PF01935.17 gi|88602451|ref|YP_502629.1| - 0.13 12.3 0.4 0.44 10.6 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain PKD PF00801.20 gi|88602452|ref|YP_502630.1| - 1.3e-29 101.8 15.7 1.4e-09 37.7 0.2 5.8 6 0 0 6 6 6 3 PKD domain PEGA PF08308.11 gi|88602452|ref|YP_502630.1| - 1.7e-16 59.9 21.9 3.4e-07 30.1 1.1 9.1 8 1 0 8 8 8 3 PEGA domain CarboxypepD_reg PF13620.6 gi|88602452|ref|YP_502630.1| - 2e-08 34.3 10.5 0.0014 18.9 0.3 6.0 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain PKD_3 PF16820.5 gi|88602452|ref|YP_502630.1| - 0.0046 16.7 2.3 1.9 8.3 0.2 4.3 3 0 0 3 3 3 1 PKD-like domain AMPK1_CBM PF16561.5 gi|88602452|ref|YP_502630.1| - 0.097 12.9 0.3 12 6.2 0.0 3.3 3 0 0 3 3 3 0 Glycogen recognition site of AMP-activated protein kinase fn3_3 PF14686.6 gi|88602452|ref|YP_502630.1| - 1.1 9.1 13.2 2.1 8.2 1.7 4.5 4 0 0 4 4 4 0 Polysaccharide lyase family 4, domain II PKD PF00801.20 gi|88602453|ref|YP_502631.1| - 3.3e-73 241.5 82.6 7.9e-13 48.1 1.4 10.9 11 0 0 11 11 11 10 PKD domain Pro_isomerase PF00160.21 gi|88602454|ref|YP_502632.1| - 2.5e-51 174.1 0.1 2.8e-51 173.9 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FKBP_C PF00254.28 gi|88602455|ref|YP_502633.1| - 2.2e-10 40.7 0.1 6.6e-10 39.2 0.0 2.0 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|88602455|ref|YP_502633.1| - 6e-06 26.3 0.0 1.1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 FKBP26_C-terminal DUF3553 PF12073.8 gi|88602455|ref|YP_502633.1| - 0.0079 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3553) CYTH PF01928.21 gi|88602456|ref|YP_502634.1| - 9.5e-36 123.4 0.5 1.1e-35 123.1 0.5 1.0 1 0 0 1 1 1 1 CYTH domain DUF4041 PF13250.6 gi|88602456|ref|YP_502634.1| - 0.12 12.2 0.2 3.8 7.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) Metallophos_2 PF12850.7 gi|88602457|ref|YP_502635.1| - 1.5e-12 48.0 0.0 3.7e-12 46.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|88602457|ref|YP_502635.1| - 2e-11 44.8 0.0 2.9e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|88602457|ref|YP_502635.1| - 3.8e-07 29.7 0.1 6.5e-05 22.4 0.0 2.4 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily FtsJ PF01728.19 gi|88602457|ref|YP_502635.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Radical_SAM PF04055.21 gi|88602458|ref|YP_502636.1| - 7e-27 94.8 0.0 1.1e-26 94.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|88602458|ref|YP_502636.1| - 4e-06 26.9 0.0 1.3e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain ATPase PF06745.13 gi|88602459|ref|YP_502637.1| - 4.1e-51 173.5 0.1 5.1e-51 173.2 0.1 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|88602459|ref|YP_502637.1| - 2.3e-05 23.7 1.2 0.057 12.6 0.1 2.1 1 1 0 2 2 2 2 PAXNEB protein AAA_25 PF13481.6 gi|88602459|ref|YP_502637.1| - 2.5e-05 24.0 0.0 0.0001 21.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|88602459|ref|YP_502637.1| - 0.00067 19.0 0.7 0.00097 18.5 0.7 1.5 1 1 0 1 1 1 1 Rad51 MEDS PF14417.6 gi|88602459|ref|YP_502637.1| - 0.00068 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.6 gi|88602459|ref|YP_502637.1| - 0.0015 18.3 0.3 0.048 13.4 0.3 2.6 1 1 0 1 1 1 1 AAA domain Elong_Iki1 PF10483.9 gi|88602459|ref|YP_502637.1| - 0.028 13.9 0.1 0.03 13.8 0.1 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 AAA_10 PF12846.7 gi|88602459|ref|YP_502637.1| - 0.033 13.1 0.1 0.85 8.5 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_14 PF13173.6 gi|88602459|ref|YP_502637.1| - 0.07 13.2 0.1 0.29 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|88602460|ref|YP_502638.1| - 1.6e-12 47.3 0.0 3.6e-12 46.1 0.0 1.6 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|88602460|ref|YP_502638.1| - 0.0032 16.8 0.0 0.019 14.2 0.0 2.0 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|88602460|ref|YP_502638.1| - 0.11 12.1 0.0 0.55 9.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|88602461|ref|YP_502639.1| - 4.1e-45 154.0 0.1 8.2e-45 153.0 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|88602462|ref|YP_502640.1| - 1.7e-31 108.8 9.0 5.2e-17 62.0 2.3 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Golgin_A5 PF09787.9 gi|88602463|ref|YP_502641.1| - 9.7e-05 22.0 87.3 0.0063 16.0 20.5 5.0 1 1 4 5 5 5 3 Golgin subfamily A member 5 Filament PF00038.21 gi|88602463|ref|YP_502641.1| - 0.0013 18.4 17.4 0.0013 18.4 17.4 3.5 1 1 2 3 3 3 1 Intermediate filament protein HsbA PF12296.8 gi|88602463|ref|YP_502641.1| - 0.029 14.8 8.0 3.4 8.1 0.1 4.5 4 2 0 4 4 4 0 Hydrophobic surface binding protein A DotD PF16816.5 gi|88602463|ref|YP_502641.1| - 0.051 13.5 0.7 0.41 10.6 0.1 2.9 3 0 0 3 3 3 0 DotD protein TPR_MLP1_2 PF07926.12 gi|88602463|ref|YP_502641.1| - 0.17 11.9 86.9 0.077 13.1 20.4 6.6 2 2 4 6 6 6 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|88602463|ref|YP_502641.1| - 0.2 10.5 87.5 0.26 10.1 24.8 5.1 1 1 4 5 5 5 0 Spc7 kinetochore protein PNK3P PF08645.11 gi|88602463|ref|YP_502641.1| - 0.32 10.7 9.0 0.83 9.3 2.9 3.0 2 2 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DUF4407 PF14362.6 gi|88602463|ref|YP_502641.1| - 0.33 10.2 57.1 0.16 11.3 12.2 4.3 1 1 2 4 4 4 0 Domain of unknown function (DUF4407) HMMR_N PF15905.5 gi|88602463|ref|YP_502641.1| - 0.35 10.3 90.5 0.057 12.9 19.7 5.0 1 1 4 5 5 5 0 Hyaluronan mediated motility receptor N-terminal DUF3584 PF12128.8 gi|88602463|ref|YP_502641.1| - 0.94 6.9 82.6 0.25 8.8 7.8 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3584) Shugoshin_N PF07558.11 gi|88602463|ref|YP_502641.1| - 1.9 8.4 23.4 5.8 6.9 0.1 7.9 8 0 0 8 8 8 0 Shugoshin N-terminal coiled-coil region DUF948 PF06103.11 gi|88602463|ref|YP_502641.1| - 2.1 8.7 25.0 0.5 10.7 0.9 6.2 4 2 2 7 7 6 0 Bacterial protein of unknown function (DUF948) FAM184 PF15665.5 gi|88602463|ref|YP_502641.1| - 3.7 7.3 84.1 2.4 7.9 18.9 4.3 1 1 2 3 3 3 0 Family with sequence similarity 184, A and B MbeD_MobD PF04899.12 gi|88602463|ref|YP_502641.1| - 8.8 6.5 23.6 0.58 10.3 1.3 6.4 4 3 2 6 6 6 0 MbeD/MobD like MCPsignal PF00015.21 gi|88602464|ref|YP_502642.1| - 1e-39 136.1 51.5 1.8e-39 135.3 19.9 5.8 1 1 6 7 7 7 4 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|88602464|ref|YP_502642.1| - 1.9e-05 24.8 32.5 0.014 15.6 5.0 6.4 4 2 1 6 6 6 2 Bacterial protein of unknown function (DUF948) HD_assoc PF13286.6 gi|88602464|ref|YP_502642.1| - 0.0016 18.9 0.7 0.0074 16.8 0.5 2.3 2 0 0 2 2 1 1 Phosphohydrolase-associated domain Cbl_N PF02262.16 gi|88602464|ref|YP_502642.1| - 0.0016 18.4 0.5 3 7.9 0.0 3.8 4 1 0 4 4 4 1 CBL proto-oncogene N-terminal domain 1 Latarcin PF10279.9 gi|88602464|ref|YP_502642.1| - 0.0038 17.6 0.0 25 5.3 0.0 4.8 3 2 1 4 4 4 0 Latarcin precursor Mce4_CUP1 PF11887.8 gi|88602464|ref|YP_502642.1| - 0.0045 16.5 8.1 0.005 16.3 1.0 3.1 3 0 0 3 3 3 1 Cholesterol uptake porter CUP1 of Mce4, putative Syntaxin_2 PF14523.6 gi|88602464|ref|YP_502642.1| - 0.0054 17.1 23.2 1.1 9.7 0.4 6.1 1 1 4 6 6 6 1 Syntaxin-like protein Dor1 PF04124.12 gi|88602464|ref|YP_502642.1| - 0.018 13.7 15.7 0.64 8.7 0.2 3.6 3 1 0 3 3 3 0 Dor1-like family DUF1664 PF07889.12 gi|88602464|ref|YP_502642.1| - 0.025 14.6 28.8 0.03 14.3 4.7 5.4 5 1 0 5 5 5 0 Protein of unknown function (DUF1664) HAMP PF00672.25 gi|88602464|ref|YP_502642.1| - 0.026 14.9 1.9 1.5 9.2 0.0 4.5 4 1 0 4 4 4 0 HAMP domain Laminin_II PF06009.12 gi|88602464|ref|YP_502642.1| - 0.036 14.1 41.8 0.67 10.0 0.8 6.1 3 1 4 7 7 7 0 Laminin Domain II ATP_sub_h PF10775.9 gi|88602464|ref|YP_502642.1| - 0.04 13.9 0.1 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 ATP synthase complex subunit h APG6_N PF17675.1 gi|88602464|ref|YP_502642.1| - 0.05 14.1 0.1 0.05 14.1 0.1 3.8 3 1 0 3 3 3 0 Apg6 coiled-coil region CorA PF01544.18 gi|88602464|ref|YP_502642.1| - 0.057 12.7 15.6 0.042 13.2 0.8 3.7 2 1 1 4 4 4 0 CorA-like Mg2+ transporter protein ApoLp-III PF07464.11 gi|88602464|ref|YP_502642.1| - 0.17 12.0 33.7 1.8 8.6 10.2 5.2 3 3 0 4 4 4 0 Apolipophorin-III precursor (apoLp-III) DUF2779 PF11074.8 gi|88602464|ref|YP_502642.1| - 0.23 11.9 3.3 3.6 8.1 0.3 3.4 2 1 0 2 2 2 0 Domain of unknown function(DUF2779) DUF2203 PF09969.9 gi|88602464|ref|YP_502642.1| - 0.27 12.0 20.6 4.1 8.2 1.6 5.0 2 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) Occludin_ELL PF07303.13 gi|88602464|ref|YP_502642.1| - 0.66 10.7 10.0 41 5.0 0.3 5.2 3 1 3 6 6 6 0 Occludin homology domain Filament PF00038.21 gi|88602464|ref|YP_502642.1| - 0.68 9.4 23.8 0.51 9.9 3.2 3.9 2 2 1 3 3 3 0 Intermediate filament protein DUF4094 PF13334.6 gi|88602464|ref|YP_502642.1| - 0.77 10.2 3.9 1.6 9.2 0.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4094) DUF4363 PF14276.6 gi|88602464|ref|YP_502642.1| - 1.4 9.1 12.9 2 8.6 0.1 5.2 5 1 0 5 5 5 0 Domain of unknown function (DUF4363) DUF2067 PF09840.9 gi|88602464|ref|YP_502642.1| - 2.1 7.9 8.9 1.2 8.7 0.1 4.3 4 2 1 5 5 5 0 Uncharacterized protein conserved in archaea (DUF2067) Spc7 PF08317.11 gi|88602464|ref|YP_502642.1| - 2.5 6.9 26.3 0.47 9.3 4.3 4.0 2 2 2 4 4 4 0 Spc7 kinetochore protein Focal_AT PF03623.13 gi|88602464|ref|YP_502642.1| - 4.4 7.3 17.3 0.55 10.2 1.1 5.1 4 3 1 5 5 5 0 Focal adhesion targeting region Muted PF14942.6 gi|88602464|ref|YP_502642.1| - 6.6 7.1 23.1 0.63 10.4 3.0 4.6 2 2 2 5 5 5 0 Organelle biogenesis, Muted-like protein DUF772 PF05598.11 gi|88602465|ref|YP_502643.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88602465|ref|YP_502643.1| - 6.5e-11 42.5 0.0 6.5e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88602465|ref|YP_502643.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88602465|ref|YP_502643.1| - 0.19 12.1 3.7 0.31 11.5 3.7 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88602465|ref|YP_502643.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 V-ATPase_G_2 PF16999.5 gi|88602466|ref|YP_502644.1| - 2.1e-06 28.1 9.7 2.4e-06 27.9 9.7 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit vATP-synt_E PF01991.18 gi|88602466|ref|YP_502644.1| - 8.4e-06 25.3 7.5 9.8e-06 25.1 7.5 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|88602466|ref|YP_502644.1| - 0.00067 19.7 14.0 0.001 19.1 14.0 1.4 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|88602466|ref|YP_502644.1| - 0.0059 16.7 10.9 0.011 15.8 8.7 1.9 1 1 1 2 2 2 1 DivIVA protein DUF3552 PF12072.8 gi|88602466|ref|YP_502644.1| - 0.022 14.2 11.4 0.048 13.1 9.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF3806 PF12713.7 gi|88602466|ref|YP_502644.1| - 0.029 14.1 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) Rep-A_N PF04057.12 gi|88602466|ref|YP_502644.1| - 0.038 14.0 0.5 0.4 10.7 0.1 2.1 2 0 0 2 2 2 0 Replication factor-A protein 1, N-terminal domain DUF2870 PF11069.8 gi|88602466|ref|YP_502644.1| - 0.1 13.0 4.5 0.081 13.3 2.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2870) Tho2 PF11262.8 gi|88602466|ref|YP_502644.1| - 0.13 11.5 2.8 0.15 11.3 2.8 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 V-ATPase_G PF03179.15 gi|88602466|ref|YP_502644.1| - 0.13 12.8 10.0 0.18 12.4 10.0 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Vma12 PF11712.8 gi|88602466|ref|YP_502644.1| - 0.43 10.6 3.8 7.3 6.7 1.1 2.0 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase MRPL52 PF18699.1 gi|88602466|ref|YP_502644.1| - 3.9 7.7 8.5 0.65 10.2 1.2 2.3 1 1 1 2 2 2 0 Mitoribosomal protein mL52 V_ATPase_I PF01496.19 gi|88602467|ref|YP_502645.1| - 6e-32 110.5 0.5 2.5e-18 65.4 0.0 2.6 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family VP4_helical PF17478.2 gi|88602467|ref|YP_502645.1| - 0.0029 17.1 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Rotavirus VP4 helical domain DUF4618 PF15397.6 gi|88602467|ref|YP_502645.1| - 0.04 13.3 0.8 2.8 7.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Use1 PF09753.9 gi|88602467|ref|YP_502645.1| - 0.055 13.2 1.7 1.3 8.7 0.1 2.4 3 0 0 3 3 3 0 Membrane fusion protein Use1 Phage_portal PF04860.12 gi|88602467|ref|YP_502645.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Phage portal protein TIP120 PF08623.10 gi|88602467|ref|YP_502645.1| - 0.11 12.3 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 TATA-binding protein interacting (TIP20) Tup_N PF08581.10 gi|88602467|ref|YP_502645.1| - 0.83 10.0 3.1 16 5.9 0.2 2.4 2 0 0 2 2 2 0 Tup N-terminal ATP-synt_C PF00137.21 gi|88602468|ref|YP_502646.1| - 8.1e-16 58.1 13.4 8.1e-16 58.1 13.4 1.8 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|88602469|ref|YP_502647.1| - 2.5e-15 56.4 10.2 7e-15 55.0 10.2 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DivIVA PF05103.13 gi|88602469|ref|YP_502647.1| - 0.0074 16.4 2.8 0.0074 16.4 2.8 2.2 1 1 1 2 2 2 1 DivIVA protein Saccharop_dh_N PF04455.12 gi|88602469|ref|YP_502647.1| - 0.039 14.4 1.3 0.28 11.6 0.0 2.5 1 1 2 3 3 3 0 LOR/SDH bifunctional enzyme conserved region Histidinol_dh PF00815.20 gi|88602469|ref|YP_502647.1| - 0.052 12.6 3.0 0.067 12.2 3.0 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase GrpE PF01025.19 gi|88602469|ref|YP_502647.1| - 0.085 12.5 4.9 0.11 12.1 4.9 1.2 1 0 0 1 1 1 0 GrpE ERp29 PF07749.12 gi|88602469|ref|YP_502647.1| - 0.56 11.1 6.3 1.5 9.7 2.5 2.2 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain V-ATPase_G_2 PF16999.5 gi|88602469|ref|YP_502647.1| - 0.92 10.0 10.3 2.2 8.8 7.8 2.1 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit vATP-synt_AC39 PF01992.16 gi|88602470|ref|YP_502648.1| - 5.4e-71 239.8 4.0 6e-71 239.7 4.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit TBPIP PF07106.13 gi|88602470|ref|YP_502648.1| - 0.021 14.8 0.3 0.071 13.0 0.1 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain Toxin_36 PF10550.9 gi|88602470|ref|YP_502648.1| - 7.9 8.1 11.4 69 5.2 0.2 4.5 4 0 0 4 4 4 0 Conantokin-G mollusc-toxin ATP-synt_F PF01990.17 gi|88602471|ref|YP_502649.1| - 2.1e-16 60.0 0.1 2.3e-16 59.9 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|88602472|ref|YP_502650.1| - 5.8e-95 316.9 0.0 8.9e-95 316.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|88602472|ref|YP_502650.1| - 1e-40 138.4 0.1 2e-40 137.4 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|88602472|ref|YP_502650.1| - 2.4e-12 47.2 1.0 7.5e-12 45.6 1.0 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|88602472|ref|YP_502650.1| - 0.028 14.4 0.3 4.1 7.4 0.0 2.4 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|88602472|ref|YP_502650.1| - 0.056 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|88602473|ref|YP_502651.1| - 3.4e-64 216.4 0.0 6.3e-64 215.5 0.0 1.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|88602473|ref|YP_502651.1| - 1.6e-12 47.8 2.5 3.1e-12 46.8 2.5 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|88602473|ref|YP_502651.1| - 0.16 12.1 0.8 0.44 10.7 0.8 1.8 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_D PF01813.17 gi|88602474|ref|YP_502652.1| - 1.1e-55 188.5 7.2 1.3e-55 188.3 7.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Snapin_Pallidin PF14712.6 gi|88602474|ref|YP_502652.1| - 0.15 12.5 3.1 5.8 7.4 0.0 2.9 3 0 0 3 3 3 0 Snapin/Pallidin MazE_antitoxin PF04014.18 gi|88602475|ref|YP_502653.1| - 2.9e-08 33.5 0.4 7.4e-08 32.1 0.2 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2375 PF09558.10 gi|88602475|ref|YP_502653.1| - 0.02 14.9 0.0 0.035 14.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2375) Thump_like PF18096.1 gi|88602475|ref|YP_502653.1| - 0.065 13.2 0.0 0.088 12.8 0.0 1.2 1 0 0 1 1 1 0 THUMP domain-like AAA_14 PF13173.6 gi|88602476|ref|YP_502654.1| - 3.2e-25 88.7 0.0 5.8e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|88602476|ref|YP_502654.1| - 0.00038 20.4 0.0 0.001 19.0 0.0 1.6 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|88602476|ref|YP_502654.1| - 0.00056 20.3 0.0 0.001 19.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4143 PF13635.6 gi|88602476|ref|YP_502654.1| - 0.00087 19.4 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Viral_helicase1 PF01443.18 gi|88602476|ref|YP_502654.1| - 0.0011 18.8 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|88602476|ref|YP_502654.1| - 0.0022 18.3 0.1 0.67 10.2 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88602476|ref|YP_502654.1| - 0.0039 17.6 0.5 0.042 14.2 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|88602476|ref|YP_502654.1| - 0.037 14.6 0.0 0.069 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|88602476|ref|YP_502654.1| - 0.062 13.0 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|88602476|ref|YP_502654.1| - 0.08 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|88602476|ref|YP_502654.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF4277 PF14104.6 gi|88602477|ref|YP_502655.1| - 2.3e-40 137.3 0.0 5e-40 136.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|88602477|ref|YP_502655.1| - 2.1e-11 43.9 0.0 1.5e-10 41.1 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|88602477|ref|YP_502655.1| - 0.11 12.2 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 DDE superfamily endonuclease UPF0175 PF03683.13 gi|88602478|ref|YP_502656.1| - 9.8e-23 79.7 0.0 1.1e-22 79.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF2689 PF10894.8 gi|88602478|ref|YP_502656.1| - 0.082 12.7 0.0 0.75 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2689) DUF3368 PF11848.8 gi|88602479|ref|YP_502657.1| - 5.7e-13 48.4 0.1 1.1e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PduV-EutP PF10662.9 gi|88602479|ref|YP_502657.1| - 0.078 12.7 0.1 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF4277 PF14104.6 gi|88602480|ref|YP_502658.1| - 1.6e-40 137.8 0.0 5.1e-39 133.0 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|88602480|ref|YP_502658.1| - 3.2e-13 49.8 0.0 9.9e-13 48.2 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain RMMBL PF07521.12 gi|88602480|ref|YP_502658.1| - 0.19 11.7 0.9 9.7 6.2 0.0 3.2 4 0 0 4 4 4 0 Zn-dependent metallo-hydrolase RNA specificity domain AAA-ATPase_like PF09820.9 gi|88602481|ref|YP_502659.1| - 6.6e-99 330.9 0.0 9.8e-99 330.3 0.0 1.3 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602481|ref|YP_502659.1| - 7.6e-32 109.4 0.1 1.2e-31 108.7 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3903 PF13043.6 gi|88602481|ref|YP_502659.1| - 0.17 11.7 0.0 0.42 10.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) PGK PF00162.19 gi|88602482|ref|YP_502660.1| - 1.1e-112 376.7 0.1 1.3e-112 376.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Glyoxalase PF00903.25 gi|88602483|ref|YP_502661.1| - 3.1e-14 53.3 0.1 6.2e-06 26.4 0.0 3.8 3 1 0 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|88602483|ref|YP_502661.1| - 0.00036 20.4 0.1 1.8 8.5 0.0 2.9 3 0 0 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|88602483|ref|YP_502661.1| - 0.00085 19.6 0.0 1.3 9.3 0.0 2.7 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|88602483|ref|YP_502661.1| - 0.045 14.5 0.0 9.2 7.1 0.0 2.7 3 0 0 3 3 3 0 Glyoxalase-like domain CppA_C PF14507.6 gi|88602483|ref|YP_502661.1| - 0.05 14.3 0.0 12 6.7 0.0 2.3 2 0 0 2 2 2 0 CppA C-terminal CppA_N PF14506.6 gi|88602483|ref|YP_502661.1| - 0.22 11.6 0.0 15 5.7 0.0 2.5 3 0 0 3 3 3 0 CppA N-terminal Cas_Cas1 PF01867.16 gi|88602484|ref|YP_502662.1| - 7.1e-49 166.4 0.0 9.1e-49 166.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 PGM_PMM_I PF02878.16 gi|88602485|ref|YP_502663.1| - 1.3e-40 138.3 0.3 1.7e-39 134.7 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|88602485|ref|YP_502663.1| - 6.6e-22 77.8 0.0 1.3e-21 76.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|88602485|ref|YP_502663.1| - 7.8e-22 77.8 0.0 1.7e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|88602485|ref|YP_502663.1| - 1.7e-12 47.3 0.0 3.9e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHASE4 PF05228.13 gi|88602487|ref|YP_502665.1| - 4e-30 104.8 0.0 1.3e-29 103.2 0.0 1.9 2 0 0 2 2 2 1 CHASE4 domain PAS_9 PF13426.7 gi|88602487|ref|YP_502665.1| - 1.7e-25 89.3 0.0 1.7e-07 31.4 0.0 4.0 3 1 0 3 3 3 3 PAS domain PAS PF00989.25 gi|88602487|ref|YP_502665.1| - 4.4e-22 78.2 0.0 5.1e-10 39.3 0.0 4.2 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|88602487|ref|YP_502665.1| - 3.2e-20 72.4 0.0 2.1e-10 40.8 0.0 4.1 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|88602487|ref|YP_502665.1| - 2.8e-12 47.1 0.0 7e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88602487|ref|YP_502665.1| - 3.7e-10 39.6 0.0 0.0002 21.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|88602487|ref|YP_502665.1| - 1.5e-08 34.8 0.1 0.026 14.8 0.0 3.9 4 0 0 4 4 4 2 PAS fold PAS_11 PF14598.6 gi|88602487|ref|YP_502665.1| - 0.003 17.7 0.1 0.94 9.6 0.0 2.8 2 1 1 3 3 3 1 PAS domain HisKA PF00512.25 gi|88602487|ref|YP_502665.1| - 0.0036 17.3 2.0 0.0092 16.0 0.3 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|88602487|ref|YP_502665.1| - 0.013 15.2 0.1 0.036 13.8 0.1 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|88602487|ref|YP_502665.1| - 0.014 15.0 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|88602487|ref|YP_502665.1| - 0.045 13.6 0.0 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 GHKL domain Siah-Interact_N PF09032.11 gi|88602487|ref|YP_502665.1| - 0.27 11.6 1.2 0.54 10.6 1.2 1.5 1 0 0 1 1 1 0 Siah interacting protein, N terminal SieB PF14163.6 gi|88602487|ref|YP_502665.1| - 0.44 10.0 2.2 4.4 6.8 0.1 2.4 2 0 0 2 2 2 0 Super-infection exclusion protein B Response_reg PF00072.24 gi|88602488|ref|YP_502666.1| - 2.5e-22 79.1 0.0 6.6e-22 77.8 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|88602488|ref|YP_502666.1| - 0.013 15.8 0.1 0.033 14.4 0.0 1.8 2 0 0 2 2 2 0 PAS domain PAS_8 PF13188.7 gi|88602488|ref|YP_502666.1| - 0.04 14.0 0.0 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 PAS domain PAS PF00989.25 gi|88602488|ref|YP_502666.1| - 0.096 12.7 0.1 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 PAS fold Phage_integrase PF00589.22 gi|88602489|ref|YP_502667.1| - 2.3e-34 118.7 0.0 3.3e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|88602489|ref|YP_502667.1| - 3.9e-10 40.1 1.2 1.2e-09 38.6 0.5 2.2 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|88602489|ref|YP_502667.1| - 2.1e-07 31.2 5.1 0.00018 21.7 0.3 2.8 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain DUF3417 PF11897.8 gi|88602491|ref|YP_502669.1| - 8.3e-33 113.1 2.5 1.6e-32 112.2 1.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|88602491|ref|YP_502669.1| - 3.4e-32 111.6 0.0 9.4e-26 90.3 0.0 3.5 2 1 1 3 3 3 2 Carbohydrate phosphorylase Capsule_synth PF05159.14 gi|88602491|ref|YP_502669.1| - 0.035 13.6 0.3 0.2 11.1 0.0 2.1 2 0 0 2 2 2 0 Capsule polysaccharide biosynthesis protein B-block_TFIIIC PF04182.12 gi|88602492|ref|YP_502670.1| - 0.00017 21.7 0.0 0.00029 20.9 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|88602492|ref|YP_502670.1| - 0.0083 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88602492|ref|YP_502670.1| - 0.0086 15.9 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|88602492|ref|YP_502670.1| - 0.061 12.9 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|88602492|ref|YP_502670.1| - 0.066 13.1 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LSM PF01423.22 gi|88602493|ref|YP_502671.1| - 2e-17 62.6 0.2 2.2e-17 62.5 0.2 1.1 1 0 0 1 1 1 1 LSM domain MtrG PF04210.13 gi|88602493|ref|YP_502671.1| - 0.0064 16.3 0.1 0.0078 16.1 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF150_C PF17384.2 gi|88602493|ref|YP_502671.1| - 0.0092 16.1 0.1 0.013 15.7 0.1 1.3 1 0 0 1 1 1 1 RimP C-terminal SH3 domain FBPase PF00316.20 gi|88602494|ref|YP_502672.1| - 4.5e-34 117.6 0.0 6.1e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|88602494|ref|YP_502672.1| - 0.00019 21.1 0.0 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 Inositol monophosphatase family RVT_1 PF00078.27 gi|88602495|ref|YP_502673.1| - 1.2e-41 142.7 0.0 2.3e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88602495|ref|YP_502673.1| - 1.2e-29 102.3 1.2 2.7e-29 101.2 1.2 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88602495|ref|YP_502673.1| - 3.5e-24 84.6 9.5 1.1e-23 83.1 9.5 1.9 1 0 0 1 1 1 1 Group II intron, maturase-specific domain PAS_3 PF08447.12 gi|88602496|ref|YP_502674.1| - 1.7e-21 76.3 1.4 1.6e-16 60.4 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|88602496|ref|YP_502674.1| - 9.6e-21 74.1 0.0 1.2e-15 57.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|88602496|ref|YP_502674.1| - 2e-20 73.0 0.0 5.2e-20 71.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88602496|ref|YP_502674.1| - 1.7e-17 63.4 0.0 1.3e-11 44.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88602496|ref|YP_502674.1| - 9.3e-17 61.2 0.0 3e-09 37.1 0.0 2.8 3 0 0 3 3 2 2 PAS domain PAS_8 PF13188.7 gi|88602496|ref|YP_502674.1| - 1.1e-06 28.5 0.0 8.8e-06 25.6 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|88602496|ref|YP_502674.1| - 2e-05 25.1 0.0 3.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88602496|ref|YP_502674.1| - 0.00069 19.3 0.0 0.003 17.2 0.0 2.1 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain OKR_DC_1_N PF03709.15 gi|88602496|ref|YP_502674.1| - 0.008 16.4 0.0 0.29 11.4 0.0 2.9 2 1 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_10 PF13596.6 gi|88602496|ref|YP_502674.1| - 0.017 15.7 0.0 0.25 12.0 0.0 2.6 2 0 0 2 2 2 0 PAS domain HisKA PF00512.25 gi|88602496|ref|YP_502674.1| - 0.025 14.6 2.5 0.035 14.2 0.2 2.3 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Cas_Cas1 PF01867.16 gi|88602496|ref|YP_502674.1| - 0.098 11.8 0.6 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 CRISPR associated protein Cas1 Rubredoxin PF00301.20 gi|88602497|ref|YP_502675.1| - 2.9e-17 62.4 0.6 3.3e-17 62.2 0.6 1.1 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|88602497|ref|YP_502675.1| - 0.0002 21.4 0.3 0.00022 21.2 0.3 1.1 1 0 0 1 1 1 1 PHD-finger zf-Sec23_Sec24 PF04810.15 gi|88602497|ref|YP_502675.1| - 0.0025 17.8 0.4 0.89 9.7 0.1 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.10 gi|88602497|ref|YP_502675.1| - 0.0029 17.7 0.3 0.008 16.3 0.3 1.7 1 1 0 1 1 1 1 Zinc ribbon domain Vps36-NZF-N PF16988.5 gi|88602497|ref|YP_502675.1| - 0.007 15.7 0.5 0.084 12.3 0.1 2.0 2 0 0 2 2 2 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|88602497|ref|YP_502675.1| - 0.031 13.8 1.1 3.7 7.1 0.3 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RanBP PF00641.18 gi|88602497|ref|YP_502675.1| - 0.031 13.6 2.4 0.57 9.5 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others RecR PF02132.15 gi|88602497|ref|YP_502675.1| - 0.032 13.8 0.9 0.38 10.4 0.9 2.0 1 1 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.11 gi|88602497|ref|YP_502675.1| - 0.12 12.3 0.2 0.33 10.9 0.2 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.12 gi|88602497|ref|YP_502675.1| - 0.64 10.4 3.7 2.4 8.5 0.4 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PAS_9 PF13426.7 gi|88602498|ref|YP_502676.1| - 1e-19 70.7 0.0 1.8e-11 44.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain DisA_N PF02457.16 gi|88602498|ref|YP_502676.1| - 2e-18 66.1 0.0 3.8e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PAS_4 PF08448.10 gi|88602498|ref|YP_502676.1| - 1e-11 45.1 0.0 4.2e-09 36.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|88602498|ref|YP_502676.1| - 4.1e-09 36.4 0.0 3.3e-07 30.3 0.0 3.0 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|88602498|ref|YP_502676.1| - 1.2e-07 31.9 0.0 0.00076 19.7 0.0 3.6 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|88602498|ref|YP_502676.1| - 5.2e-06 26.4 0.0 0.0046 17.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.6 gi|88602498|ref|YP_502676.1| - 0.0056 16.8 0.0 0.021 15.0 0.0 2.0 3 0 0 3 3 3 1 PAS domain Acylphosphatase PF00708.18 gi|88602499|ref|YP_502677.1| - 1.1e-22 80.2 0.3 1.2e-22 80.1 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase RDD PF06271.12 gi|88602501|ref|YP_502679.1| - 5.3e-21 75.3 8.0 7e-21 74.9 8.0 1.2 1 0 0 1 1 1 1 RDD family Peptidase_M50 PF02163.22 gi|88602503|ref|YP_502681.1| - 1.3e-22 80.3 1.7 1.3e-22 80.3 1.7 2.0 2 0 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.6 gi|88602503|ref|YP_502681.1| - 2.9e-07 30.7 0.1 4.8e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 PDZ domain RNase_HII PF01351.18 gi|88602504|ref|YP_502682.1| - 7.3e-45 153.2 0.0 8.7e-45 153.0 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII IreB PF06135.12 gi|88602504|ref|YP_502682.1| - 0.071 13.3 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 IreB regulatory phosphoprotein Pilin_N PF07790.11 gi|88602505|ref|YP_502683.1| - 2.3e-19 70.1 6.4 3.4e-19 69.5 6.4 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal SurA_N_3 PF13624.6 gi|88602505|ref|YP_502683.1| - 1.2 8.9 4.4 1.8 8.3 4.4 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Pilin_N PF07790.11 gi|88602506|ref|YP_502684.1| - 1.6e-18 67.4 6.3 2.6e-18 66.7 6.3 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PhdYeFM_antitox PF02604.19 gi|88602506|ref|YP_502684.1| - 0.24 11.2 0.6 0.44 10.4 0.1 1.6 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system SurA_N_3 PF13624.6 gi|88602506|ref|YP_502684.1| - 1.7 8.4 3.9 2.7 7.8 3.9 1.3 1 0 0 1 1 1 0 SurA N-terminal domain DDE_Tnp_IS66 PF03050.14 gi|88602507|ref|YP_502685.1| - 3.8e-30 105.3 0.0 5.1e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|88602507|ref|YP_502685.1| - 1.3e-07 31.9 0.5 3.5e-07 30.5 0.5 1.8 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 CpXC PF14353.6 gi|88602507|ref|YP_502685.1| - 0.0024 17.9 0.1 0.005 16.9 0.1 1.5 1 0 0 1 1 1 1 CpXC protein DZR PF12773.7 gi|88602507|ref|YP_502685.1| - 0.013 15.5 0.1 0.026 14.5 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon ZapB PF06005.12 gi|88602507|ref|YP_502685.1| - 0.03 14.7 0.3 0.06 13.8 0.3 1.4 1 0 0 1 1 1 0 Cell division protein ZapB Zn-ribbon_8 PF09723.10 gi|88602507|ref|YP_502685.1| - 0.14 12.3 0.8 17 5.6 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Yae1_N PF09811.9 gi|88602508|ref|YP_502686.1| - 0.014 15.1 5.2 0.014 15.1 5.2 1.7 2 0 0 2 2 2 0 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602508|ref|YP_502686.1| - 0.042 13.7 0.6 0.077 12.8 0.6 1.4 1 0 0 1 1 1 0 Casein kinase II regulatory subunit CutC PF03932.14 gi|88602508|ref|YP_502686.1| - 0.11 11.9 4.2 0.21 11.0 0.5 2.1 1 1 1 2 2 2 0 CutC family MSC PF09402.10 gi|88602508|ref|YP_502686.1| - 0.4 10.1 3.3 2.6 7.4 0.2 2.1 1 1 1 2 2 2 0 Man1-Src1p-C-terminal domain MSC PF09402.10 gi|88602509|ref|YP_502687.1| - 0.03 13.8 1.6 0.51 9.7 0.1 2.0 1 1 1 2 2 2 0 Man1-Src1p-C-terminal domain CK_II_beta PF01214.18 gi|88602509|ref|YP_502687.1| - 0.044 13.6 0.6 0.074 12.9 0.6 1.3 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602509|ref|YP_502687.1| - 0.078 12.6 0.4 0.15 11.7 0.4 1.5 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT CutC PF03932.14 gi|88602509|ref|YP_502687.1| - 0.15 11.5 0.8 0.22 11.0 0.8 1.2 1 0 0 1 1 1 0 CutC family Yae1_N PF09811.9 gi|88602510|ref|YP_502688.1| - 0.00013 21.6 4.9 0.00013 21.6 4.9 1.6 2 0 0 2 2 2 1 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602510|ref|YP_502688.1| - 0.035 13.9 0.7 0.06 13.1 0.7 1.3 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602510|ref|YP_502688.1| - 0.066 12.9 0.4 0.16 11.7 0.4 1.7 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT MSC PF09402.10 gi|88602510|ref|YP_502688.1| - 0.07 12.6 3.2 0.3 10.5 0.2 2.1 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain MmlI PF09448.10 gi|88602510|ref|YP_502688.1| - 0.081 13.4 0.2 0.16 12.4 0.2 1.5 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase Yae1_N PF09811.9 gi|88602511|ref|YP_502689.1| - 0.011 15.5 1.8 0.011 15.4 0.7 1.6 2 0 0 2 2 2 0 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602511|ref|YP_502689.1| - 0.025 14.4 0.5 0.043 13.6 0.5 1.4 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602511|ref|YP_502689.1| - 0.08 12.6 0.4 0.15 11.7 0.4 1.5 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT MSC PF09402.10 gi|88602511|ref|YP_502689.1| - 0.25 10.8 2.5 1.2 8.5 0.3 2.0 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain Yae1_N PF09811.9 gi|88602512|ref|YP_502690.1| - 0.0001 21.9 4.6 0.0001 21.9 4.6 1.6 2 0 0 2 2 2 1 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602512|ref|YP_502690.1| - 0.033 14.0 0.5 0.055 13.3 0.5 1.3 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602512|ref|YP_502690.1| - 0.08 12.6 0.4 0.16 11.7 0.4 1.5 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT MSC PF09402.10 gi|88602512|ref|YP_502690.1| - 0.15 11.5 3.1 0.75 9.2 0.2 2.1 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain Yae1_N PF09811.9 gi|88602513|ref|YP_502691.1| - 0.00057 19.5 1.2 0.00057 19.5 1.2 1.6 2 0 0 2 2 2 1 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602513|ref|YP_502691.1| - 0.035 13.9 0.6 0.065 13.1 0.6 1.4 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602513|ref|YP_502691.1| - 0.082 12.6 0.4 0.16 11.7 0.4 1.5 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT MSC PF09402.10 gi|88602513|ref|YP_502691.1| - 0.11 12.0 2.1 0.65 9.4 0.2 2.0 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain CutC PF03932.14 gi|88602513|ref|YP_502691.1| - 0.28 10.6 3.3 1.3 8.4 2.3 2.0 1 1 1 2 2 2 0 CutC family Yae1_N PF09811.9 gi|88602514|ref|YP_502692.1| - 0.014 15.1 0.4 0.027 14.2 0.1 1.6 2 0 0 2 2 2 0 Essential protein Yae1, N terminal CK_II_beta PF01214.18 gi|88602514|ref|YP_502692.1| - 0.039 13.8 0.5 0.068 13.0 0.5 1.3 1 0 0 1 1 1 0 Casein kinase II regulatory subunit GIT_SHD PF08518.11 gi|88602514|ref|YP_502692.1| - 0.075 12.7 0.4 0.17 11.6 0.4 1.6 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT MSC PF09402.10 gi|88602514|ref|YP_502692.1| - 0.08 12.4 2.3 0.61 9.5 0.2 2.0 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain Motile_Sperm PF00635.26 gi|88602516|ref|YP_502694.1| - 0.00053 19.8 0.0 1.2 9.1 0.0 4.1 5 0 0 5 5 5 1 MSP (Major sperm protein) domain TIG PF01833.24 gi|88602516|ref|YP_502694.1| - 0.00064 19.7 44.1 0.0032 17.5 1.9 6.8 6 1 0 6 6 6 4 IPT/TIG domain SdrD_B PF17210.3 gi|88602516|ref|YP_502694.1| - 0.0028 17.9 2.1 31 4.8 0.0 4.7 5 0 0 5 5 5 0 SdrD B-like domain DUF2012 PF09430.10 gi|88602516|ref|YP_502694.1| - 0.014 15.5 0.0 0.49 10.5 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2012) PKD PF00801.20 gi|88602516|ref|YP_502694.1| - 0.02 14.7 2.0 0.062 13.1 0.6 2.7 2 0 0 2 2 2 0 PKD domain Y_Y_Y PF07495.13 gi|88602516|ref|YP_502694.1| - 0.11 12.5 0.3 63 3.6 0.0 4.0 4 0 0 4 4 4 0 Y_Y_Y domain Neocarzinostat PF00960.18 gi|88602516|ref|YP_502694.1| - 0.27 11.2 21.3 3.1 7.8 0.5 5.9 6 0 0 6 6 6 0 Neocarzinostatin family ChiW_Ig_like PF18683.1 gi|88602516|ref|YP_502694.1| - 1 9.7 11.2 2.4 8.4 0.4 4.1 3 0 0 3 3 3 0 Chitinase W immunoglobulin-like domain Acetyltransf_18 PF18014.1 gi|88602517|ref|YP_502695.1| - 1.1e-27 96.4 0.0 1.8e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88602517|ref|YP_502695.1| - 2.5e-07 30.9 0.2 0.00015 22.0 0.1 2.5 3 0 0 3 3 3 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88602517|ref|YP_502695.1| - 0.069 13.6 0.1 0.15 12.5 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PLDc_2 PF13091.6 gi|88602518|ref|YP_502696.1| - 1e-42 145.1 0.0 8.7e-29 100.1 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|88602518|ref|YP_502696.1| - 4.7e-13 48.7 2.8 3.3e-06 27.0 0.7 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 gi|88602518|ref|YP_502696.1| - 3.7e-12 46.0 5.7 7e-12 45.1 5.7 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal PrgI PF12666.7 gi|88602518|ref|YP_502696.1| - 0.054 14.2 0.4 0.13 13.0 0.4 1.6 1 0 0 1 1 1 0 PrgI family protein Radical_SAM PF04055.21 gi|88602518|ref|YP_502696.1| - 0.095 13.1 0.0 12 6.2 0.0 2.6 2 1 0 3 3 3 0 Radical SAM superfamily DPM3 PF08285.11 gi|88602518|ref|YP_502696.1| - 0.14 12.3 0.6 1.3 9.2 0.3 2.2 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Glucos_trans_II PF14264.6 gi|88602518|ref|YP_502696.1| - 0.51 9.6 6.4 0.8 9.0 6.4 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII PHP_C PF13263.6 gi|88602519|ref|YP_502697.1| - 1e-15 57.2 0.0 2.2e-15 56.1 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|88602519|ref|YP_502697.1| - 4.5e-07 30.3 0.1 6e-07 29.9 0.1 1.3 1 1 0 1 1 1 1 PHP domain Glyco_hydro_97 PF10566.9 gi|88602519|ref|YP_502697.1| - 0.17 11.1 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 PAS PF00989.25 gi|88602521|ref|YP_502699.1| - 1.1e-15 57.6 0.0 3.1e-08 33.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88602521|ref|YP_502699.1| - 5e-13 49.2 0.5 2.8e-06 27.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|88602521|ref|YP_502699.1| - 3.7e-10 40.3 0.2 7.6e-10 39.3 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88602521|ref|YP_502699.1| - 6.2e-10 38.9 0.0 0.00037 20.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|88602521|ref|YP_502699.1| - 0.00027 21.2 0.0 0.4 11.0 0.0 3.2 2 2 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.6 gi|88602521|ref|YP_502699.1| - 0.0028 17.5 0.1 0.0087 16.0 0.1 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|88602521|ref|YP_502699.1| - 0.055 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|88602521|ref|YP_502699.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lactamase_B PF00753.27 gi|88602522|ref|YP_502700.1| - 6.5e-08 32.8 0.8 1.5e-07 31.6 0.8 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1184 PF06683.11 gi|88602522|ref|YP_502700.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) EpCAM_N PF18635.1 gi|88602522|ref|YP_502700.1| - 0.19 11.9 0.2 0.36 11.0 0.2 1.5 1 0 0 1 1 1 0 Epithelial cell adhesion molecule N-terminal domain TetR_N PF00440.23 gi|88602523|ref|YP_502701.1| - 2.1e-15 56.2 0.0 3.9e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Aldo_ket_red PF00248.21 gi|88602524|ref|YP_502702.1| - 6.5e-47 160.1 0.0 6.7e-46 156.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|88602524|ref|YP_502702.1| - 1.5e-10 41.4 9.3 3.9e-10 40.1 9.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602524|ref|YP_502702.1| - 1.5e-09 37.9 8.1 3.1e-09 36.8 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602524|ref|YP_502702.1| - 2.4e-05 24.4 9.7 0.00017 21.6 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602524|ref|YP_502702.1| - 4.4e-05 23.8 7.0 0.00011 22.6 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602524|ref|YP_502702.1| - 0.00027 20.6 1.2 0.00027 20.6 1.2 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88602524|ref|YP_502702.1| - 0.00069 19.7 10.6 0.041 14.0 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602524|ref|YP_502702.1| - 0.0013 18.7 1.8 0.0013 18.7 1.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88602524|ref|YP_502702.1| - 0.0016 18.4 3.4 0.0016 18.4 3.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|88602524|ref|YP_502702.1| - 0.0017 18.1 0.6 0.0017 18.1 0.6 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|88602524|ref|YP_502702.1| - 0.0019 18.3 5.6 0.013 15.7 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602524|ref|YP_502702.1| - 0.0093 16.9 8.0 0.013 16.5 1.7 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|88602524|ref|YP_502702.1| - 0.019 15.4 2.1 0.019 15.4 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88602524|ref|YP_502702.1| - 0.043 14.6 5.4 0.91 10.4 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88602524|ref|YP_502702.1| - 0.13 12.9 14.1 0.22 12.1 4.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602524|ref|YP_502702.1| - 3.3 8.9 18.6 0.22 12.5 6.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Arch_flagellin PF01917.16 gi|88602525|ref|YP_502703.1| - 1.8e-12 47.8 3.9 1.9e-12 47.6 3.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Nitroreductase PF00881.24 gi|88602525|ref|YP_502703.1| - 0.031 14.3 0.1 0.034 14.2 0.1 1.1 1 0 0 1 1 1 0 Nitroreductase family DUF5122 PF17164.4 gi|88602526|ref|YP_502704.1| - 0.043 14.1 0.1 0.097 13.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5122) beta-propeller ALS_ss_C PF10369.9 gi|88602527|ref|YP_502705.1| - 4e-31 107.0 1.3 5e-30 103.5 0.1 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|88602527|ref|YP_502705.1| - 4.3e-20 71.3 0.1 9.4e-20 70.2 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|88602527|ref|YP_502705.1| - 1.1e-13 50.7 0.1 2.8e-13 49.4 0.1 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|88602527|ref|YP_502705.1| - 0.0001 22.8 0.2 0.00019 21.9 0.2 1.5 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|88602527|ref|YP_502705.1| - 0.003 17.5 0.5 0.15 12.0 0.0 3.1 1 1 0 2 2 2 1 ACT domain DUF211 PF02680.14 gi|88602527|ref|YP_502705.1| - 0.0086 16.2 1.0 0.036 14.2 0.2 2.0 2 0 0 2 2 2 1 Uncharacterized ArCR, COG1888 Stomoxyn PF11585.8 gi|88602527|ref|YP_502705.1| - 0.13 12.3 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn APC_r PF05923.12 gi|88602527|ref|YP_502705.1| - 0.18 11.5 0.5 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 APC repeat TPP_enzyme_N PF02776.18 gi|88602528|ref|YP_502706.1| - 1.5e-58 197.2 0.1 3.3e-56 189.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|88602528|ref|YP_502706.1| - 1.5e-55 186.7 0.0 2.5e-55 185.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|88602528|ref|YP_502706.1| - 1.1e-54 184.3 0.5 4.6e-53 179.1 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|88602528|ref|YP_502706.1| - 0.0024 17.7 0.5 0.0071 16.1 0.1 2.0 2 1 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ATP-grasp_5 PF13549.6 gi|88602528|ref|YP_502706.1| - 0.02 14.4 0.1 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 ATP-grasp domain HMGL-like PF00682.19 gi|88602529|ref|YP_502707.1| - 3.2e-78 262.9 0.4 5.8e-78 262.1 0.2 1.5 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|88602529|ref|YP_502707.1| - 2e-33 115.1 3.1 2.9e-33 114.6 2.3 1.7 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Ribosomal_S30AE PF02482.19 gi|88602529|ref|YP_502707.1| - 0.0091 16.8 0.7 0.027 15.3 0.1 2.1 2 1 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein RuvA_C PF07499.13 gi|88602529|ref|YP_502707.1| - 0.12 12.9 0.2 9.6 6.8 0.0 2.9 2 0 0 2 2 2 0 RuvA, C-terminal domain Ribosomal_S11 PF00411.19 gi|88602529|ref|YP_502707.1| - 0.12 12.8 2.6 0.58 10.6 0.1 3.1 3 0 0 3 3 3 0 Ribosomal protein S11 Ribosomal_S21 PF01165.20 gi|88602529|ref|YP_502707.1| - 0.15 11.8 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S21 AIM24 PF01987.17 gi|88602530|ref|YP_502708.1| - 8.7e-56 188.9 0.3 9.8e-56 188.7 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 IlvN PF07991.12 gi|88602531|ref|YP_502709.1| - 7.2e-76 253.3 1.6 9.6e-76 252.9 1.6 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|88602531|ref|YP_502709.1| - 8.7e-62 207.7 0.6 1.3e-61 207.1 0.6 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|88602531|ref|YP_502709.1| - 8.1e-07 28.6 0.1 1.4e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|88602531|ref|YP_502709.1| - 3.6e-06 27.1 0.1 8.9e-06 25.9 0.1 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|88602531|ref|YP_502709.1| - 9.1e-06 25.9 0.0 1.6e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|88602531|ref|YP_502709.1| - 7.5e-05 23.2 0.2 0.00015 22.2 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|88602531|ref|YP_502709.1| - 0.098 12.3 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Cas_DxTHG PF09455.10 gi|88602532|ref|YP_502710.1| - 2.7e-59 201.6 0.0 3.4e-59 201.2 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family HEPN_Apea PF18739.1 gi|88602532|ref|YP_502710.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Apea-like HEPN Glycos_transf_1 PF00534.20 gi|88602533|ref|YP_502711.1| - 2.4e-32 111.8 0.0 3.9e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88602533|ref|YP_502711.1| - 3.6e-25 89.0 0.0 6.4e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88602533|ref|YP_502711.1| - 2.3e-20 73.3 0.0 4.8e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|88602533|ref|YP_502711.1| - 5.3e-07 30.2 0.0 1.1e-06 29.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|88602533|ref|YP_502711.1| - 0.00025 21.1 0.0 0.00044 20.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|88602533|ref|YP_502711.1| - 0.0076 16.6 0.0 0.017 15.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1805 PF08827.11 gi|88602534|ref|YP_502712.1| - 1.2e-20 73.5 0.1 1.6e-20 73.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Usp PF00582.26 gi|88602535|ref|YP_502713.1| - 8.1e-29 100.9 0.0 9.6e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF4013 PF13197.6 gi|88602536|ref|YP_502714.1| - 4.3e-30 104.8 27.8 4.3e-30 104.8 27.8 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) FeThRed_B PF02943.15 gi|88602537|ref|YP_502715.1| - 9.4e-22 77.0 1.1 1e-21 76.9 1.1 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain SAICAR_synt PF01259.18 gi|88602538|ref|YP_502716.1| - 1.4e-61 208.3 0.2 1.9e-61 207.9 0.2 1.2 1 0 0 1 1 1 1 SAICAR synthetase Radical_SAM PF04055.21 gi|88602538|ref|YP_502716.1| - 3.8e-13 50.2 1.0 1.4e-11 45.1 0.1 2.7 2 0 0 2 2 2 1 Radical SAM superfamily CofC PF01983.16 gi|88602539|ref|YP_502717.1| - 2e-42 144.8 0.0 2.6e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|88602539|ref|YP_502717.1| - 0.03 14.7 0.0 0.049 14.0 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain MotCF PF09158.10 gi|88602539|ref|YP_502717.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage T4 MotA, C-terminal DUF296 PF03479.15 gi|88602540|ref|YP_502718.1| - 7.7e-20 71.3 0.3 8.9e-20 71.1 0.3 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Glycos_transf_2 PF00535.26 gi|88602541|ref|YP_502719.1| - 3.2e-30 105.2 0.3 7.8e-30 103.9 0.1 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88602541|ref|YP_502719.1| - 2.3e-12 47.3 1.0 1.7e-11 44.5 1.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|88602541|ref|YP_502719.1| - 6.1e-08 32.5 0.0 6.5e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|88602541|ref|YP_502719.1| - 3e-06 26.8 0.1 6.7e-06 25.7 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|88602541|ref|YP_502719.1| - 5.1e-05 23.3 0.0 6.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|88602541|ref|YP_502719.1| - 0.0058 17.1 0.1 0.011 16.2 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 LPG_synthase_TM PF03706.13 gi|88602542|ref|YP_502720.1| - 3.7e-42 144.9 39.6 4.4e-42 144.7 39.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region COX7C PF02935.16 gi|88602542|ref|YP_502720.1| - 0.15 12.3 3.6 0.61 10.4 3.6 2.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc DHBP_synthase PF00926.19 gi|88602543|ref|YP_502721.1| - 2.2e-55 187.2 0.0 2.5e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PAF-AH_p_II PF03403.13 gi|88602543|ref|YP_502721.1| - 0.15 10.5 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II CTP-dep_RFKase PF01982.16 gi|88602544|ref|YP_502722.1| - 1.1e-42 144.9 0.0 1.6e-42 144.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.22 gi|88602544|ref|YP_502722.1| - 6.9e-06 25.9 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88602544|ref|YP_502722.1| - 0.00011 22.0 0.0 0.00023 21.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|88602544|ref|YP_502722.1| - 0.00037 20.4 0.1 0.0013 18.7 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|88602544|ref|YP_502722.1| - 0.00087 18.8 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|88602544|ref|YP_502722.1| - 0.0034 17.1 0.0 0.0071 16.1 0.0 1.6 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|88602544|ref|YP_502722.1| - 0.042 13.6 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|88602544|ref|YP_502722.1| - 0.06 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|88602544|ref|YP_502722.1| - 0.071 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|88602544|ref|YP_502722.1| - 0.087 13.0 0.2 5.9 7.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_AsnC-type PF13404.6 gi|88602544|ref|YP_502722.1| - 0.11 12.3 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CxxCxxCC PF03692.15 gi|88602545|ref|YP_502723.1| - 2.1e-07 31.5 2.4 3.9e-07 30.7 2.4 1.4 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Acetyltransf_1 PF00583.25 gi|88602546|ref|YP_502724.1| - 2.6e-10 40.6 0.1 7.3e-10 39.1 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88602546|ref|YP_502724.1| - 7.4e-10 39.1 0.1 1.3e-09 38.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|88602546|ref|YP_502724.1| - 5.2e-09 36.1 0.0 1.1e-08 35.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88602546|ref|YP_502724.1| - 1.9e-06 27.8 0.0 3.5e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|88602546|ref|YP_502724.1| - 3.8e-05 23.8 0.3 8.1e-05 22.7 0.0 1.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88602546|ref|YP_502724.1| - 0.0069 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Fer4_7 PF12838.7 gi|88602547|ref|YP_502725.1| - 1.1e-09 38.7 4.6 0.00047 20.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602547|ref|YP_502725.1| - 1.5e-09 37.3 10.1 6.3e-05 22.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602547|ref|YP_502725.1| - 2e-08 35.0 4.9 0.002 19.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88602547|ref|YP_502725.1| - 4.5e-07 29.9 10.4 6.9e-07 29.3 10.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602547|ref|YP_502725.1| - 8.6e-07 29.0 10.6 4e-06 26.8 11.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602547|ref|YP_502725.1| - 3.5e-06 27.0 12.2 0.00059 19.9 3.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88602547|ref|YP_502725.1| - 3.7e-06 27.4 3.0 0.0094 16.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602547|ref|YP_502725.1| - 4.5e-06 27.0 1.7 0.0066 16.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602547|ref|YP_502725.1| - 0.00015 22.0 4.2 0.00019 21.6 4.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602547|ref|YP_502725.1| - 0.00016 21.6 3.8 0.00016 21.6 3.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88602547|ref|YP_502725.1| - 0.0027 17.7 3.3 0.0027 17.7 3.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88602547|ref|YP_502725.1| - 0.003 18.4 5.5 0.032 15.1 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602547|ref|YP_502725.1| - 0.0049 17.7 15.2 0.17 12.9 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88602547|ref|YP_502725.1| - 0.018 15.7 3.9 3.3 8.5 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|88602547|ref|YP_502725.1| - 0.17 12.4 13.8 0.5 10.9 5.1 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|88602547|ref|YP_502725.1| - 0.65 10.6 10.8 1.2 9.8 3.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Methyltransf_25 PF13649.6 gi|88602550|ref|YP_502728.1| - 1.9e-10 41.3 0.0 3.5e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602550|ref|YP_502728.1| - 7e-09 36.3 0.0 1.4e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602550|ref|YP_502728.1| - 4.7e-07 30.4 0.0 9.2e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602550|ref|YP_502728.1| - 3.8e-06 26.8 0.0 5.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602550|ref|YP_502728.1| - 5.6e-05 23.0 0.0 7.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602550|ref|YP_502728.1| - 0.07 12.5 0.0 0.093 12.0 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PAS_4 PF08448.10 gi|88602551|ref|YP_502729.1| - 1e-46 157.7 0.0 2.1e-12 47.3 0.0 6.4 5 2 0 5 5 5 5 PAS fold PAS PF00989.25 gi|88602551|ref|YP_502729.1| - 2.2e-41 140.4 0.2 2.7e-09 37.0 0.0 7.2 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.7 gi|88602551|ref|YP_502729.1| - 1.2e-36 125.2 0.6 4.1e-07 30.2 0.0 6.3 5 1 0 5 5 5 5 PAS domain Response_reg PF00072.24 gi|88602551|ref|YP_502729.1| - 1.2e-22 80.2 0.0 3.3e-22 78.8 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|88602551|ref|YP_502729.1| - 3.1e-22 78.1 0.0 4.4e-06 26.6 0.0 5.3 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|88602551|ref|YP_502729.1| - 7.6e-13 48.6 0.7 4.4e-06 26.9 0.2 6.2 7 0 0 7 7 7 1 PAS fold PAS_10 PF13596.6 gi|88602551|ref|YP_502729.1| - 8.7e-10 39.1 0.1 1.2 9.7 0.0 5.4 5 1 0 5 5 4 3 PAS domain PAS_7 PF12860.7 gi|88602551|ref|YP_502729.1| - 4.6e-09 36.4 0.1 0.11 12.7 0.0 6.3 6 2 0 6 6 6 2 PAS fold MLTR_LBD PF17765.1 gi|88602551|ref|YP_502729.1| - 0.00057 20.1 0.0 16 5.6 0.0 3.3 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain ZNRF_3_ecto PF18212.1 gi|88602551|ref|YP_502729.1| - 0.028 14.4 1.1 7.2 6.7 0.1 3.7 4 0 0 4 4 4 0 ZNRF-3 Ectodomain Cache_3-Cache_2 PF17201.4 gi|88602551|ref|YP_502729.1| - 0.065 12.5 0.0 1.7 7.9 0.0 2.9 3 0 0 3 3 3 0 Cache 3/Cache 2 fusion domain sCache_3_3 PF17202.4 gi|88602551|ref|YP_502729.1| - 0.098 13.1 0.0 7.1 7.1 0.0 3.3 3 0 0 3 3 3 0 Single cache domain 3 COG5 PF10392.9 gi|88602551|ref|YP_502729.1| - 0.48 10.6 3.7 1.4 9.1 0.2 2.8 3 0 0 3 3 3 0 Golgi transport complex subunit 5 DUF2115 PF09888.9 gi|88602552|ref|YP_502730.1| - 6.7e-50 169.8 0.0 8.8e-50 169.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF308 PF03729.13 gi|88602553|ref|YP_502731.1| - 6.8e-17 61.6 45.0 2.7e-10 40.4 16.6 3.2 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) Alkyl_sulf_dimr PF14863.6 gi|88602554|ref|YP_502732.1| - 2e-46 157.9 0.5 2e-46 157.9 0.5 1.8 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|88602554|ref|YP_502732.1| - 2.3e-36 125.7 0.2 3.9e-36 124.9 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Alkyl_sulf_C PF14864.6 gi|88602554|ref|YP_502732.1| - 1.3e-33 116.0 0.4 2.6e-33 115.0 0.4 1.6 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Lactamase_B_2 PF12706.7 gi|88602554|ref|YP_502732.1| - 1.1e-07 31.6 0.0 2.2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SCP2 PF02036.17 gi|88602554|ref|YP_502732.1| - 0.01 16.3 0.7 0.031 14.8 0.1 2.1 2 0 0 2 2 2 1 SCP-2 sterol transfer family Fer4_11 PF13247.6 gi|88602555|ref|YP_502733.1| - 1.4e-21 76.5 7.8 1.4e-21 76.5 7.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88602555|ref|YP_502733.1| - 7e-13 49.0 28.4 8.7e-07 29.4 9.5 2.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602555|ref|YP_502733.1| - 5.1e-12 45.8 20.1 6.9e-06 26.1 3.9 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602555|ref|YP_502733.1| - 1.9e-11 43.2 35.1 5.8e-08 32.2 3.4 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88602555|ref|YP_502733.1| - 5.6e-11 42.0 35.3 4.7e-05 23.3 2.3 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88602555|ref|YP_502733.1| - 1.6e-09 37.2 32.7 3.2e-05 23.8 1.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88602555|ref|YP_502733.1| - 1.6e-08 34.5 31.2 3.3e-05 23.9 9.4 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602555|ref|YP_502733.1| - 1.7e-07 32.1 22.8 0.0079 17.1 5.3 4.5 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|88602555|ref|YP_502733.1| - 0.00014 22.3 25.0 0.0095 16.4 7.5 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88602555|ref|YP_502733.1| - 0.00048 20.4 36.6 0.0028 18.0 2.8 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fe_dep_repr_C PF02742.15 gi|88602555|ref|YP_502733.1| - 0.0013 18.7 0.9 0.22 11.6 0.1 2.8 1 1 1 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fer4_21 PF14697.6 gi|88602555|ref|YP_502733.1| - 0.0058 16.7 29.6 0.044 13.9 4.8 3.9 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602555|ref|YP_502733.1| - 0.012 16.5 42.9 0.15 13.1 6.2 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602555|ref|YP_502733.1| - 0.067 13.7 1.6 0.067 13.7 1.6 4.0 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88602555|ref|YP_502733.1| - 7.8 7.4 20.3 2 9.3 2.0 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Prismane PF03063.20 gi|88602556|ref|YP_502734.1| - 2.4e-169 564.3 0.2 2.7e-169 564.1 0.2 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rho_N PF07498.12 gi|88602556|ref|YP_502734.1| - 0.059 13.3 0.4 12 5.9 0.0 3.2 3 0 0 3 3 3 0 Rho termination factor, N-terminal domain 2Fe-2S_thioredx PF01257.19 gi|88602557|ref|YP_502735.1| - 9.2e-47 158.5 0.0 1.1e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_51K PF01512.17 gi|88602558|ref|YP_502736.1| - 5.2e-44 149.8 0.0 7.8e-44 149.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|88602558|ref|YP_502736.1| - 2.3e-31 107.7 0.1 6.9e-31 106.2 0.0 1.8 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 gi|88602558|ref|YP_502736.1| - 0.004 17.0 0.5 0.0086 15.9 0.5 1.6 1 0 0 1 1 1 1 SLBB domain 2Fe-2S_thioredx PF01257.19 gi|88602558|ref|YP_502736.1| - 0.034 14.0 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.11 gi|88602558|ref|YP_502736.1| - 0.04 14.3 0.0 0.08 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) Fer2_4 PF13510.6 gi|88602559|ref|YP_502737.1| - 2.2e-14 53.3 0.1 4.1e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 gi|88602559|ref|YP_502737.1| - 7.4e-09 36.1 12.2 1e-05 26.0 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602559|ref|YP_502737.1| - 9.4e-08 32.1 7.0 9.4e-08 32.1 7.0 2.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|88602559|ref|YP_502737.1| - 2.6e-06 27.3 0.6 2.6e-06 27.3 0.6 3.1 3 1 1 4 4 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.6 gi|88602559|ref|YP_502737.1| - 1.8e-05 24.8 18.3 6.4e-05 23.0 11.3 3.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602559|ref|YP_502737.1| - 3.8e-05 23.3 25.6 0.00098 18.9 5.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602559|ref|YP_502737.1| - 0.0033 18.3 19.1 0.021 15.7 8.7 3.1 3 1 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|88602559|ref|YP_502737.1| - 0.0041 17.1 2.5 0.0041 17.1 2.5 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602559|ref|YP_502737.1| - 0.005 17.3 18.2 0.16 12.6 2.7 3.5 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602559|ref|YP_502737.1| - 0.0067 16.9 9.9 0.0067 16.9 9.9 3.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602559|ref|YP_502737.1| - 0.0078 16.3 13.2 0.028 14.5 1.1 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88602559|ref|YP_502737.1| - 0.027 15.2 8.1 0.83 10.4 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|88602559|ref|YP_502737.1| - 0.047 13.9 0.7 0.047 13.9 0.7 3.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602559|ref|YP_502737.1| - 0.075 13.2 24.5 0.92 9.7 9.8 3.4 2 2 0 2 2 2 0 4Fe-4S dicluster domain Clr5 PF14420.6 gi|88602559|ref|YP_502737.1| - 0.17 12.1 0.3 0.64 10.3 0.1 1.9 2 0 0 2 2 2 0 Clr5 domain zf-RING_4 PF14570.6 gi|88602559|ref|YP_502737.1| - 0.33 10.8 0.2 0.33 10.8 0.2 4.1 4 1 1 5 5 4 0 RING/Ubox like zinc-binding domain Mut7-C PF01927.16 gi|88602559|ref|YP_502737.1| - 1.4 9.0 6.3 4.6 7.3 0.8 2.8 1 1 2 3 3 3 0 Mut7-C RNAse domain Fer4_13 PF13370.6 gi|88602559|ref|YP_502737.1| - 2.5 8.7 15.4 7.8 7.1 5.3 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|88602560|ref|YP_502738.1| - 9.2e-16 58.1 0.0 1.4e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|88602560|ref|YP_502738.1| - 1.1e-10 41.7 0.0 2.1e-10 40.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|88602560|ref|YP_502738.1| - 2.4e-08 33.7 0.1 1.1e-05 25.0 0.0 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|88602560|ref|YP_502738.1| - 3.5e-07 29.7 0.0 5.6e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|88602560|ref|YP_502738.1| - 1.2e-06 28.2 0.0 0.0018 17.8 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|88602560|ref|YP_502738.1| - 0.00012 22.7 0.0 0.0013 19.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88602560|ref|YP_502738.1| - 0.00091 19.7 0.0 0.0042 17.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|88602560|ref|YP_502738.1| - 0.0013 19.3 0.0 0.016 15.7 0.0 2.2 2 0 0 2 2 2 1 ABC transporter Fer4_NifH PF00142.18 gi|88602560|ref|YP_502738.1| - 0.003 17.0 0.0 0.0064 16.0 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 gi|88602560|ref|YP_502738.1| - 0.005 15.9 0.3 0.012 14.6 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|88602560|ref|YP_502738.1| - 0.0051 16.6 0.0 0.007 16.2 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|88602560|ref|YP_502738.1| - 0.011 15.7 0.4 0.011 15.7 0.4 1.8 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.20 gi|88602560|ref|YP_502738.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_26 PF13500.6 gi|88602560|ref|YP_502738.1| - 0.034 14.0 1.6 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|88602560|ref|YP_502738.1| - 0.035 14.1 0.0 0.25 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CLP1_P PF16575.5 gi|88602560|ref|YP_502738.1| - 0.042 13.7 0.1 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|88602560|ref|YP_502738.1| - 0.044 13.4 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|88602560|ref|YP_502738.1| - 0.049 13.2 0.3 0.18 11.4 0.3 1.9 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88602560|ref|YP_502738.1| - 0.051 13.8 0.3 0.089 13.0 0.3 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|88602560|ref|YP_502738.1| - 0.053 13.2 0.0 0.073 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|88602560|ref|YP_502738.1| - 0.084 12.6 0.1 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|88602560|ref|YP_502738.1| - 0.085 12.9 0.2 12 6.0 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PGM_PMM_II PF02879.16 gi|88602560|ref|YP_502738.1| - 0.091 13.4 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KTI12 PF08433.10 gi|88602560|ref|YP_502738.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|88602560|ref|YP_502738.1| - 0.15 11.8 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase Pox_A32 PF04665.12 gi|88602560|ref|YP_502738.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_21 PF13304.6 gi|88602560|ref|YP_502738.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|88602560|ref|YP_502738.1| - 0.22 10.7 0.6 0.34 10.1 0.6 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|88602560|ref|YP_502738.1| - 0.34 10.7 1.3 1 9.2 0.5 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain PhdYeFM_antitox PF02604.19 gi|88602561|ref|YP_502739.1| - 4.4e-13 48.8 0.1 5.9e-13 48.4 0.1 1.1 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system UPF0158 PF03682.13 gi|88602562|ref|YP_502740.1| - 3e-05 24.1 0.7 4.1e-05 23.6 0.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0158) EF-hand_8 PF13833.6 gi|88602562|ref|YP_502740.1| - 0.092 12.6 0.6 0.24 11.3 0.2 1.9 2 0 0 2 2 2 0 EF-hand domain pair Pirin PF02678.16 gi|88602563|ref|YP_502741.1| - 4.1e-36 123.3 0.1 1.2e-35 121.7 0.1 1.7 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 gi|88602563|ref|YP_502741.1| - 8.4e-29 100.0 0.0 1e-27 96.5 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|88602563|ref|YP_502741.1| - 0.0088 15.7 0.2 0.79 9.5 0.2 2.4 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|88602563|ref|YP_502741.1| - 0.016 15.1 0.0 0.053 13.4 0.0 1.7 2 0 0 2 2 2 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|88602563|ref|YP_502741.1| - 0.14 11.9 0.2 9.6 6.0 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF861) Fer4_16 PF13484.6 gi|88602564|ref|YP_502742.1| - 8.3e-09 36.3 6.7 1.4e-08 35.5 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|88602564|ref|YP_502742.1| - 2.3e-07 31.3 8.3 4.2e-07 30.5 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88602564|ref|YP_502742.1| - 3e-05 23.6 13.2 0.00081 19.1 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88602564|ref|YP_502742.1| - 9.7e-05 22.4 7.8 0.00021 21.3 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602564|ref|YP_502742.1| - 0.0003 20.7 10.6 0.077 13.1 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88602564|ref|YP_502742.1| - 0.001 19.1 7.7 0.018 15.2 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602564|ref|YP_502742.1| - 0.0013 18.9 9.5 0.012 15.7 3.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602564|ref|YP_502742.1| - 0.0039 18.0 14.5 0.2 12.7 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602564|ref|YP_502742.1| - 0.0046 17.5 7.1 0.013 16.0 7.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602564|ref|YP_502742.1| - 0.048 14.1 9.0 1.2 9.6 9.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602564|ref|YP_502742.1| - 0.056 13.6 12.1 1.5 9.1 3.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3039 PF11238.8 gi|88602564|ref|YP_502742.1| - 0.058 13.2 0.3 0.058 13.2 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) Fer4_4 PF12800.7 gi|88602564|ref|YP_502742.1| - 1.1 9.9 15.9 0.55 10.9 3.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88602564|ref|YP_502742.1| - 1.3 9.3 11.8 3.9 7.7 3.4 2.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Pro_CA PF00484.19 gi|88602565|ref|YP_502743.1| - 7.9e-44 149.7 0.0 9.9e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase ComX PF05952.12 gi|88602565|ref|YP_502743.1| - 0.14 12.1 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacillus competence pheromone ComX Flavodoxin_5 PF12724.7 gi|88602567|ref|YP_502745.1| - 7.4e-05 23.0 0.0 7.7e-05 23.0 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|88602568|ref|YP_502746.1| - 6.7e-07 29.6 0.0 0.0033 17.7 0.0 2.1 2 0 0 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|88602568|ref|YP_502746.1| - 5e-05 23.1 0.0 6.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.7 gi|88602568|ref|YP_502746.1| - 0.0012 18.6 0.0 0.0054 16.4 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|88602568|ref|YP_502746.1| - 0.0013 18.5 0.0 0.0079 15.9 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|88602568|ref|YP_502746.1| - 0.085 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin RsgA_GTPase PF03193.16 gi|88602569|ref|YP_502747.1| - 1.5e-26 93.3 0.1 2.5e-26 92.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|88602569|ref|YP_502747.1| - 1.7e-07 31.3 0.0 2.5e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|88602569|ref|YP_502747.1| - 8.3e-07 29.6 0.0 9.9e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 ABC transporter Septin PF00735.18 gi|88602569|ref|YP_502747.1| - 2.2e-05 23.9 0.0 3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Septin FeoB_N PF02421.18 gi|88602569|ref|YP_502747.1| - 0.00065 19.3 0.2 0.023 14.2 0.1 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|88602569|ref|YP_502747.1| - 0.0026 17.5 0.1 0.12 12.1 0.1 2.6 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|88602569|ref|YP_502747.1| - 0.0054 16.4 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AIG1 PF04548.16 gi|88602569|ref|YP_502747.1| - 0.0057 16.0 0.1 0.0084 15.5 0.1 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|88602569|ref|YP_502747.1| - 0.011 15.8 1.6 0.83 9.7 0.7 2.4 1 1 1 2 2 2 0 Dynamin family AAA_16 PF13191.6 gi|88602569|ref|YP_502747.1| - 0.011 16.1 0.1 0.015 15.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain Roc PF08477.13 gi|88602569|ref|YP_502747.1| - 0.024 14.8 0.1 0.052 13.8 0.1 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|88602569|ref|YP_502747.1| - 0.037 13.5 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.6 gi|88602569|ref|YP_502747.1| - 0.054 13.8 0.1 0.1 12.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|88602569|ref|YP_502747.1| - 0.063 13.4 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|88602569|ref|YP_502747.1| - 0.074 12.8 0.0 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|88602569|ref|YP_502747.1| - 0.099 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|88602569|ref|YP_502747.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|88602569|ref|YP_502747.1| - 0.11 12.7 1.2 0.15 12.3 0.4 1.8 1 1 1 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|88602569|ref|YP_502747.1| - 0.16 11.5 0.5 2.2 7.8 0.3 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 gi|88602569|ref|YP_502747.1| - 0.16 11.7 0.5 0.3 10.8 0.2 1.7 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|88602569|ref|YP_502747.1| - 1.3 9.5 4.9 11 6.5 4.9 2.0 1 1 0 1 1 1 0 AAA domain dCache_1 PF02743.18 gi|88602571|ref|YP_502749.1| - 2.4e-19 70.1 3.2 1.4e-17 64.4 0.1 2.8 2 1 0 2 2 2 1 Cache domain PAS PF00989.25 gi|88602571|ref|YP_502749.1| - 1.2e-18 67.1 0.0 4.9e-10 39.4 0.0 4.3 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|88602571|ref|YP_502749.1| - 2.6e-17 62.9 0.3 3.6e-09 36.8 0.0 4.4 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.10 gi|88602571|ref|YP_502749.1| - 1.2e-13 51.3 0.0 0.00023 21.4 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|88602571|ref|YP_502749.1| - 5.5e-12 45.4 0.0 0.00012 22.0 0.0 3.0 2 0 0 2 2 2 2 PAS domain HAMP PF00672.25 gi|88602571|ref|YP_502749.1| - 1.9e-11 44.2 0.0 3.2e-10 40.2 0.0 2.5 2 0 0 2 2 2 1 HAMP domain HATPase_c PF02518.26 gi|88602571|ref|YP_502749.1| - 1.9e-10 41.2 0.0 4.7e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 gi|88602571|ref|YP_502749.1| - 1.8e-05 24.2 0.4 0.00088 18.6 0.0 3.0 3 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain HATPase_c_2 PF13581.6 gi|88602571|ref|YP_502749.1| - 0.0035 17.3 0.1 0.0091 16.0 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|88602571|ref|YP_502749.1| - 0.0059 16.9 0.1 3.7 7.9 0.0 4.4 5 0 0 5 5 5 1 PAS fold HATPase_c_3 PF13589.6 gi|88602571|ref|YP_502749.1| - 0.041 13.7 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MLTR_LBD PF17765.1 gi|88602571|ref|YP_502749.1| - 0.11 12.6 0.0 1.5 8.9 0.0 2.5 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain Putative_PNPOx PF01243.20 gi|88602572|ref|YP_502750.1| - 5e-07 29.8 0.0 6.8e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1843 PF08898.10 gi|88602572|ref|YP_502750.1| - 0.16 12.5 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) AAA_2 PF07724.14 gi|88602573|ref|YP_502751.1| - 9.9e-60 201.5 1.0 1.3e-56 191.3 0.1 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|88602573|ref|YP_502751.1| - 7.4e-36 122.2 5.8 7.4e-36 122.2 5.8 3.4 1 1 2 3 3 3 1 AAA lid domain AAA PF00004.29 gi|88602573|ref|YP_502751.1| - 9.1e-26 90.8 0.3 1.1e-13 51.7 0.0 3.4 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|88602573|ref|YP_502751.1| - 1.9e-22 79.8 0.1 1.8e-14 53.9 0.0 3.3 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 gi|88602573|ref|YP_502751.1| - 4.6e-22 77.9 2.5 9.3e-22 76.9 0.4 2.8 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein Clp_N PF02861.20 gi|88602573|ref|YP_502751.1| - 2.4e-21 75.6 0.6 3e-11 43.3 0.1 2.8 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA_16 PF13191.6 gi|88602573|ref|YP_502751.1| - 1.1e-13 51.9 0.4 4.4e-06 27.2 0.0 4.4 2 2 0 3 3 3 2 AAA ATPase domain Sigma54_activat PF00158.26 gi|88602573|ref|YP_502751.1| - 1.3e-11 44.5 0.1 9.5e-08 31.9 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|88602573|ref|YP_502751.1| - 1.5e-08 34.6 0.2 0.00089 19.0 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|88602573|ref|YP_502751.1| - 1.7e-08 34.8 2.4 0.0086 16.4 0.1 4.8 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|88602573|ref|YP_502751.1| - 2.8e-08 33.9 0.7 0.026 14.6 0.0 3.9 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.21 gi|88602573|ref|YP_502751.1| - 1.4e-07 31.1 0.3 0.088 12.2 0.0 4.5 3 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|88602573|ref|YP_502751.1| - 1.2e-06 29.1 2.8 0.015 15.8 0.0 4.3 4 0 0 4 4 4 2 AAA domain Zeta_toxin PF06414.12 gi|88602573|ref|YP_502751.1| - 1.7e-05 24.2 0.0 0.006 15.9 0.0 3.2 2 0 0 2 2 2 1 Zeta toxin AAA_7 PF12775.7 gi|88602573|ref|YP_502751.1| - 1.9e-05 24.2 0.1 0.33 10.4 0.0 3.4 3 0 0 3 3 3 2 P-loop containing dynein motor region TniB PF05621.11 gi|88602573|ref|YP_502751.1| - 2e-05 24.1 0.1 0.0079 15.6 0.0 3.8 2 2 1 3 3 3 1 Bacterial TniB protein AAA_3 PF07726.11 gi|88602573|ref|YP_502751.1| - 8.1e-05 22.5 0.1 0.086 12.7 0.0 3.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|88602573|ref|YP_502751.1| - 0.00016 21.5 1.7 3.7 7.3 0.7 4.5 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|88602573|ref|YP_502751.1| - 0.00018 21.4 0.0 0.14 12.1 0.0 3.3 3 0 0 3 3 3 1 NACHT domain Roc PF08477.13 gi|88602573|ref|YP_502751.1| - 0.00031 21.0 0.0 0.46 10.7 0.0 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ResIII PF04851.15 gi|88602573|ref|YP_502751.1| - 0.00031 20.8 0.3 0.55 10.2 0.0 4.1 3 1 0 4 4 3 1 Type III restriction enzyme, res subunit ATPase_2 PF01637.18 gi|88602573|ref|YP_502751.1| - 0.00058 19.8 14.8 0.08 12.8 1.3 4.5 3 2 0 3 3 2 2 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|88602573|ref|YP_502751.1| - 0.00059 19.6 0.0 0.32 10.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|88602573|ref|YP_502751.1| - 0.00063 20.1 0.2 2.8 8.4 0.0 3.5 4 0 0 4 4 2 1 RNA helicase DNA_pol3_delta2 PF13177.6 gi|88602573|ref|YP_502751.1| - 0.00066 19.5 0.2 0.074 12.8 0.0 3.5 3 1 0 3 3 3 1 DNA polymerase III, delta subunit AAA_28 PF13521.6 gi|88602573|ref|YP_502751.1| - 0.00094 19.5 0.2 0.97 9.7 0.0 3.7 4 0 0 4 4 3 1 AAA domain RsgA_GTPase PF03193.16 gi|88602573|ref|YP_502751.1| - 0.0013 18.7 0.1 1.2 9.0 0.0 3.0 2 1 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|88602573|ref|YP_502751.1| - 0.0024 18.0 0.0 2.4 8.3 0.0 3.4 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|88602573|ref|YP_502751.1| - 0.0059 16.6 0.0 4.8 7.2 0.0 2.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Torsin PF06309.11 gi|88602573|ref|YP_502751.1| - 0.0075 16.4 0.0 0.055 13.6 0.0 2.2 2 0 0 2 2 2 1 Torsin DnaB_C PF03796.15 gi|88602573|ref|YP_502751.1| - 0.0088 15.4 0.5 2.7 7.2 0.0 2.9 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|88602573|ref|YP_502751.1| - 0.013 15.1 0.0 0.46 10.0 0.0 3.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|88602573|ref|YP_502751.1| - 0.015 14.3 0.0 0.084 11.9 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|88602573|ref|YP_502751.1| - 0.027 15.0 3.8 0.68 10.4 0.0 3.8 3 1 0 3 3 3 0 ABC transporter PduV-EutP PF10662.9 gi|88602573|ref|YP_502751.1| - 0.1 12.4 0.0 3.8 7.3 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.17 gi|88602573|ref|YP_502751.1| - 0.1 12.7 6.0 1 9.4 0.0 3.6 3 1 1 4 4 4 0 Helicase HerA, central domain DUF4407 PF14362.6 gi|88602573|ref|YP_502751.1| - 0.21 10.9 5.9 0.42 9.9 5.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) AAA_19 PF13245.6 gi|88602573|ref|YP_502751.1| - 0.24 11.8 4.7 2.1 8.7 0.1 4.1 3 2 0 3 3 3 0 AAA domain FlxA PF14282.6 gi|88602573|ref|YP_502751.1| - 3.1 7.8 17.2 0.56 10.2 5.6 3.4 2 1 1 3 3 3 0 FlxA-like protein DUF1515 PF07439.11 gi|88602573|ref|YP_502751.1| - 3.6 7.7 5.9 25 4.9 1.9 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) Radical_SAM PF04055.21 gi|88602573|ref|YP_502751.1| - 8.4 6.7 6.5 41 4.5 1.1 3.8 3 2 0 3 3 3 0 Radical SAM superfamily Response_reg PF00072.24 gi|88602574|ref|YP_502752.1| - 4.7e-17 62.2 0.0 7e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Viral_helicase1 PF01443.18 gi|88602575|ref|YP_502753.1| - 1.6e-05 24.7 22.2 1.4 8.6 0.4 6.2 6 0 0 6 6 6 6 Viral (Superfamily 1) RNA helicase sCache_2 PF17200.4 gi|88602578|ref|YP_502756.1| - 2.8e-36 124.7 0.7 2.4e-19 69.7 0.0 3.0 2 1 1 3 3 3 2 Single Cache domain 2 dCache_2 PF08269.11 gi|88602578|ref|YP_502756.1| - 1.4e-30 106.5 0.2 4.8e-14 52.2 0.0 3.1 2 1 1 3 3 3 3 Cache domain dCache_1 PF02743.18 gi|88602578|ref|YP_502756.1| - 2.1e-05 24.5 0.3 2.1e-05 24.5 0.3 3.0 2 1 0 2 2 2 1 Cache domain Abhydrolase_1 PF00561.20 gi|88602579|ref|YP_502757.1| - 1.4e-07 31.5 0.1 1.4e-07 31.4 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|88602579|ref|YP_502757.1| - 2.2e-07 31.7 0.1 2.4e-07 31.6 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|88602579|ref|YP_502757.1| - 4.6e-05 23.2 0.2 5.4e-05 23.0 0.2 1.1 1 0 0 1 1 1 1 PGAP1-like protein Abhydrolase_5 PF12695.7 gi|88602579|ref|YP_502757.1| - 5.2e-05 23.1 0.0 5.7e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|88602579|ref|YP_502757.1| - 0.00012 21.5 0.1 0.00013 21.3 0.1 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Palm_thioest PF02089.15 gi|88602579|ref|YP_502757.1| - 0.0018 18.2 0.0 0.0019 18.1 0.0 1.1 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Ndr PF03096.14 gi|88602579|ref|YP_502757.1| - 0.0026 16.5 0.0 0.0031 16.3 0.0 1.0 1 0 0 1 1 1 1 Ndr family Thioesterase PF00975.20 gi|88602579|ref|YP_502757.1| - 0.0032 17.6 0.1 0.0035 17.5 0.1 1.1 1 0 0 1 1 1 1 Thioesterase domain LIDHydrolase PF10230.9 gi|88602579|ref|YP_502757.1| - 0.01 15.4 0.1 0.012 15.2 0.1 1.1 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase ATP-grasp_2 PF08442.10 gi|88602579|ref|YP_502757.1| - 0.02 14.5 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain Abhydrolase_3 PF07859.13 gi|88602579|ref|YP_502757.1| - 0.022 14.6 0.0 0.022 14.6 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF2974 PF11187.8 gi|88602579|ref|YP_502757.1| - 0.034 13.7 0.0 0.045 13.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2974) DUF3530 PF12048.8 gi|88602579|ref|YP_502757.1| - 0.067 12.6 0.0 0.077 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) DUF2272 PF10030.9 gi|88602579|ref|YP_502757.1| - 0.097 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2272) Pantoate_transf PF02548.15 gi|88602579|ref|YP_502757.1| - 0.098 12.0 0.1 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase DUF676 PF05057.14 gi|88602579|ref|YP_502757.1| - 0.1 12.1 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Chlorophyllase2 PF12740.7 gi|88602579|ref|YP_502757.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase enzyme Abhydrolase_8 PF06259.12 gi|88602579|ref|YP_502757.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase Peptidase_S9 PF00326.21 gi|88602579|ref|YP_502757.1| - 0.15 11.5 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Prolyl oligopeptidase family Ser_hydrolase PF06821.13 gi|88602579|ref|YP_502757.1| - 0.19 11.6 0.0 0.22 11.4 0.0 1.1 1 0 0 1 1 1 0 Serine hydrolase AAA_5 PF07728.14 gi|88602580|ref|YP_502758.1| - 1.5e-12 47.7 0.0 3.5e-07 30.3 0.0 3.0 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|88602580|ref|YP_502758.1| - 1.1e-05 25.9 0.0 0.00041 20.8 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88602580|ref|YP_502758.1| - 0.0024 18.2 0.1 0.011 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|88602580|ref|YP_502758.1| - 0.0042 16.6 0.0 0.0099 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|88602580|ref|YP_502758.1| - 0.0097 16.3 0.0 0.14 12.5 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain RNA_helicase PF00910.22 gi|88602580|ref|YP_502758.1| - 0.017 15.5 0.2 0.051 14.0 0.2 1.9 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|88602580|ref|YP_502758.1| - 0.023 14.4 0.1 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|88602580|ref|YP_502758.1| - 0.024 14.4 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|88602580|ref|YP_502758.1| - 0.028 13.5 0.2 0.063 12.3 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|88602580|ref|YP_502758.1| - 0.049 14.0 0.1 0.21 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|88602580|ref|YP_502758.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|88602580|ref|YP_502758.1| - 0.09 12.5 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|88602580|ref|YP_502758.1| - 0.16 12.1 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|88602580|ref|YP_502758.1| - 0.39 10.8 2.4 2.6 8.1 0.1 3.0 3 0 0 3 3 3 0 AAA domain McrBC PF10117.9 gi|88602581|ref|YP_502759.1| - 2.3e-64 217.6 0.1 2.8e-64 217.3 0.1 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component Ribonuc_L-PSP PF01042.21 gi|88602582|ref|YP_502760.1| - 5.3e-38 129.7 0.0 6e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Peptidase_S9 PF00326.21 gi|88602583|ref|YP_502761.1| - 8.5e-33 113.6 0.2 1.4e-32 112.9 0.2 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|88602583|ref|YP_502761.1| - 6.2e-06 26.0 0.3 0.0011 18.6 0.2 2.3 1 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|88602583|ref|YP_502761.1| - 1.1e-05 25.1 0.0 5e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|88602583|ref|YP_502761.1| - 1.6e-05 24.7 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) BAAT_C PF08840.11 gi|88602583|ref|YP_502761.1| - 2.1e-05 24.6 0.1 0.0014 18.6 0.1 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|88602583|ref|YP_502761.1| - 0.00028 20.2 0.1 0.004 16.4 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|88602583|ref|YP_502761.1| - 0.0011 17.7 0.1 0.0099 14.6 0.0 2.3 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S9_N PF02897.15 gi|88602583|ref|YP_502761.1| - 0.0017 17.2 0.0 0.091 11.5 0.0 3.0 4 0 0 4 4 4 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.12 gi|88602583|ref|YP_502761.1| - 0.0027 17.6 1.7 0.81 9.7 0.0 3.1 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Abhydrolase_2 PF02230.16 gi|88602583|ref|YP_502761.1| - 0.0072 16.2 0.1 0.085 12.6 0.0 2.0 1 1 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.20 gi|88602583|ref|YP_502761.1| - 0.044 13.4 0.7 1.7 8.2 0.4 2.3 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|88602583|ref|YP_502761.1| - 0.054 13.6 0.1 0.34 11.1 0.0 2.2 3 0 0 3 3 3 0 TAP-like protein Esterase PF00756.20 gi|88602583|ref|YP_502761.1| - 0.13 11.8 0.1 0.35 10.5 0.1 1.6 1 1 0 1 1 1 0 Putative esterase YjcZ_2 PF09680.10 gi|88602583|ref|YP_502761.1| - 0.73 9.5 5.1 1.6 8.4 5.1 1.5 1 0 0 1 1 1 0 Family of unknown function AAA-ATPase_like PF09820.9 gi|88602584|ref|YP_502762.1| - 9.2e-20 71.2 0.0 9.2e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Predicted AAA-ATPase ADH_N_2 PF16884.5 gi|88602584|ref|YP_502762.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase UPF0182 PF03699.13 gi|88602585|ref|YP_502763.1| - 5.4e-283 940.8 4.2 6.8e-283 940.5 4.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) Peptidase_M48 PF01435.18 gi|88602588|ref|YP_502766.1| - 2.2e-44 151.6 0.4 2.2e-44 151.6 0.4 1.6 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|88602588|ref|YP_502766.1| - 9.3e-07 28.3 0.8 9.3e-07 28.3 0.8 2.1 1 1 1 2 2 2 1 BlaR1 peptidase M56 Phage_holin_3_6 PF07332.11 gi|88602588|ref|YP_502766.1| - 0.0006 19.8 9.6 0.043 13.8 2.7 2.5 2 0 0 2 2 2 2 Putative Actinobacterial Holin-X, holin superfamily III SprT-like PF10263.9 gi|88602588|ref|YP_502766.1| - 0.019 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Peptidase_U49 PF10463.9 gi|88602588|ref|YP_502766.1| - 0.023 14.4 0.1 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Peptidase U49 DUF2207 PF09972.9 gi|88602588|ref|YP_502766.1| - 0.26 10.0 5.9 2.3 6.9 0.2 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Na_K-ATPase PF00287.18 gi|88602588|ref|YP_502766.1| - 1 8.4 2.0 2 7.5 2.0 1.4 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain DUF3784 PF12650.7 gi|88602588|ref|YP_502766.1| - 3.3 8.0 13.3 5.4 7.3 2.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF1129 PF06570.11 gi|88602588|ref|YP_502766.1| - 4.1 6.8 12.0 3 7.3 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) LDcluster4 PF18306.1 gi|88602589|ref|YP_502767.1| - 1.3e-36 125.5 4.8 1.5e-36 125.3 4.8 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|88602589|ref|YP_502767.1| - 3.2e-06 27.3 2.3 5.6e-06 26.5 0.2 2.0 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|88602589|ref|YP_502767.1| - 0.0001 21.6 5.1 0.0053 16.0 3.3 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Response_reg PF00072.24 gi|88602590|ref|YP_502768.1| - 1.3e-22 80.1 0.0 4e-22 78.5 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602590|ref|YP_502768.1| - 4.5e-12 46.5 0.1 1e-11 45.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88602590|ref|YP_502768.1| - 2.8e-07 30.5 0.0 3.2e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|88602590|ref|YP_502768.1| - 3.6e-06 26.9 0.0 8.9e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|88602590|ref|YP_502768.1| - 4.5e-06 26.9 0.0 1.6e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|88602590|ref|YP_502768.1| - 2.1e-05 24.7 0.0 4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|88602590|ref|YP_502768.1| - 4e-05 23.8 0.0 0.0022 18.2 0.0 2.5 2 0 0 2 2 2 1 PAS fold SPOB_a PF14689.6 gi|88602590|ref|YP_502768.1| - 0.0033 17.1 0.0 0.0092 15.7 0.0 1.8 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain MLTR_LBD PF17765.1 gi|88602590|ref|YP_502768.1| - 0.032 14.4 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain DUF2710 PF10921.8 gi|88602590|ref|YP_502768.1| - 0.034 14.5 0.0 10 6.6 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2710) HATPase_c_2 PF13581.6 gi|88602590|ref|YP_502768.1| - 0.081 12.9 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Trm56 PF01994.16 gi|88602590|ref|YP_502768.1| - 0.1 12.5 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 tRNA ribose 2'-O-methyltransferase, aTrm56 UPF0114 PF03350.16 gi|88602591|ref|YP_502769.1| - 4.6e-29 101.0 6.6 4.6e-29 101.0 6.6 2.0 1 1 1 2 2 2 2 Uncharacterized protein family, UPF0114 MpPF26 PF07666.11 gi|88602591|ref|YP_502769.1| - 1.6 8.8 20.6 3.8 7.6 2.1 2.3 1 1 1 2 2 2 0 M penetrans paralogue family 26 Rubrerythrin PF02915.17 gi|88602592|ref|YP_502770.1| - 8.8e-31 107.1 3.2 1.1e-30 106.8 3.2 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|88602592|ref|YP_502770.1| - 7.2e-08 32.5 0.4 1.1e-07 31.8 0.4 1.3 1 1 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|88602592|ref|YP_502770.1| - 0.00013 21.8 0.2 0.023 14.5 0.0 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 HypA PF01155.19 gi|88602592|ref|YP_502770.1| - 0.0011 18.9 0.1 0.002 18.1 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF892 PF05974.12 gi|88602592|ref|YP_502770.1| - 0.021 14.9 1.3 1 9.4 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|88602592|ref|YP_502770.1| - 0.041 14.1 1.6 0.15 12.3 1.5 1.9 1 1 0 1 1 1 0 Ferritin-like domain RNA_POL_M_15KD PF02150.16 gi|88602592|ref|YP_502770.1| - 0.074 12.9 0.1 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|88602592|ref|YP_502770.1| - 0.18 12.0 2.3 0.38 10.9 2.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain FeoB_associated PF12669.7 gi|88602593|ref|YP_502771.1| - 0.028 14.8 0.5 0.049 14.0 0.5 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein MRAP PF15183.6 gi|88602593|ref|YP_502771.1| - 0.57 10.2 6.3 0.34 10.9 3.4 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Baculo_11_kDa PF06143.11 gi|88602593|ref|YP_502771.1| - 3 7.5 5.1 4.7 6.9 5.1 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family Fe_dep_repress PF01325.19 gi|88602594|ref|YP_502772.1| - 3.2e-17 62.5 0.0 5.8e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|88602594|ref|YP_502772.1| - 1.2e-12 47.7 0.2 2.3e-12 46.8 0.1 1.5 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|88602594|ref|YP_502772.1| - 5.1e-08 32.7 0.0 3.4e-07 30.0 0.0 2.0 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.16 gi|88602594|ref|YP_502772.1| - 2.6e-06 27.1 0.0 5.4e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.6 gi|88602594|ref|YP_502772.1| - 7.1e-05 22.3 0.0 0.00019 20.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|88602594|ref|YP_502772.1| - 7.9e-05 22.6 0.0 0.00021 21.2 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|88602594|ref|YP_502772.1| - 8.1e-05 22.5 0.0 0.00019 21.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|88602594|ref|YP_502772.1| - 0.00014 21.6 0.0 0.00027 20.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|88602594|ref|YP_502772.1| - 0.00099 19.4 0.0 0.0031 17.8 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|88602594|ref|YP_502772.1| - 0.006 16.2 0.0 0.016 14.9 0.0 1.6 1 1 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|88602594|ref|YP_502772.1| - 0.028 14.5 0.0 0.063 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|88602594|ref|YP_502772.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|88602594|ref|YP_502772.1| - 0.048 13.6 0.0 0.093 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.9 gi|88602594|ref|YP_502772.1| - 0.064 13.4 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|88602594|ref|YP_502772.1| - 0.079 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TetR_N PF00440.23 gi|88602594|ref|YP_502772.1| - 0.14 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_23 PF13384.6 gi|88602594|ref|YP_502772.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Peripla_BP_2 PF01497.18 gi|88602595|ref|YP_502773.1| - 1.6e-36 126.1 0.7 2.1e-36 125.7 0.7 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_2 PF00891.18 gi|88602596|ref|YP_502774.1| - 1.3e-15 57.3 0.0 1.9e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|88602596|ref|YP_502774.1| - 3e-11 43.1 0.0 5.4e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_12 PF08242.12 gi|88602596|ref|YP_502774.1| - 6e-08 33.3 0.0 1.1e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602596|ref|YP_502774.1| - 5.4e-05 23.8 0.0 0.00011 22.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602596|ref|YP_502774.1| - 0.00014 21.7 0.0 0.00025 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602596|ref|YP_502774.1| - 0.00022 21.1 0.0 0.00047 20.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88602596|ref|YP_502774.1| - 0.0023 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|88602596|ref|YP_502774.1| - 0.0076 15.7 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|88602596|ref|YP_502774.1| - 0.016 15.9 0.0 0.031 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|88602596|ref|YP_502774.1| - 0.026 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase HTH_IclR PF09339.10 gi|88602596|ref|YP_502774.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Peripla_BP_2 PF01497.18 gi|88602597|ref|YP_502775.1| - 2e-31 109.4 0.0 2.8e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_25 PF13649.6 gi|88602598|ref|YP_502776.1| - 1.7e-09 38.2 0.0 3.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88602598|ref|YP_502776.1| - 2.4e-09 36.7 0.1 4.6e-09 35.7 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|88602598|ref|YP_502776.1| - 1e-05 26.2 0.0 1.7e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602598|ref|YP_502776.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602598|ref|YP_502776.1| - 7.7e-05 23.3 0.0 0.00015 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|88602598|ref|YP_502776.1| - 0.0002 20.7 0.0 0.0003 20.2 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DREV PF05219.12 gi|88602598|ref|YP_502776.1| - 0.0016 17.6 0.0 0.0031 16.6 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_31 PF13847.6 gi|88602598|ref|YP_502776.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|88602598|ref|YP_502776.1| - 0.012 15.0 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB MTS PF05175.14 gi|88602598|ref|YP_502776.1| - 0.03 13.9 0.0 0.069 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase small domain Rsm22 PF09243.10 gi|88602598|ref|YP_502776.1| - 0.04 13.2 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 FecCD PF01032.18 gi|88602599|ref|YP_502777.1| - 2.1e-91 306.2 37.0 2.7e-91 305.8 37.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|88602599|ref|YP_502777.1| - 0.00036 20.1 22.7 0.00036 20.1 22.7 1.8 2 1 0 2 2 2 1 ABC 3 transport family FAM70 PF14967.6 gi|88602599|ref|YP_502777.1| - 0.096 12.1 6.5 0.11 12.0 0.1 2.4 2 0 0 2 2 2 0 FAM70 protein DUF3767 PF12597.8 gi|88602599|ref|YP_502777.1| - 0.17 11.7 4.0 0.24 11.2 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3767) SNARE PF05739.19 gi|88602599|ref|YP_502777.1| - 7.4 6.7 6.7 30 4.7 6.7 2.0 1 0 0 1 1 1 0 SNARE domain ABC_tran PF00005.27 gi|88602600|ref|YP_502778.1| - 1.4e-30 106.6 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|88602600|ref|YP_502778.1| - 1.7e-09 37.4 1.0 6.1e-09 35.6 1.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|88602600|ref|YP_502778.1| - 4.9e-09 36.4 0.6 0.00077 19.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|88602600|ref|YP_502778.1| - 4.7e-06 27.2 0.0 8.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88602600|ref|YP_502778.1| - 1.2e-05 25.0 0.0 3.4e-05 23.5 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88602600|ref|YP_502778.1| - 2.9e-05 24.5 0.1 6e-05 23.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|88602600|ref|YP_502778.1| - 0.00024 20.9 0.2 0.0012 18.6 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88602600|ref|YP_502778.1| - 0.0004 20.3 0.0 0.00072 19.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|88602600|ref|YP_502778.1| - 0.0017 17.2 0.3 0.87 8.3 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|88602600|ref|YP_502778.1| - 0.003 17.5 0.1 0.039 13.9 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_13 PF13166.6 gi|88602600|ref|YP_502778.1| - 0.0067 15.1 0.0 0.79 8.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|88602600|ref|YP_502778.1| - 0.0072 16.1 0.0 0.017 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|88602600|ref|YP_502778.1| - 0.0073 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain HSM3_N PF18795.1 gi|88602600|ref|YP_502778.1| - 0.0077 15.7 0.2 0.011 15.2 0.2 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein HSM3, N terminal domain AAA_22 PF13401.6 gi|88602600|ref|YP_502778.1| - 0.0099 16.1 0.3 0.027 14.8 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|88602600|ref|YP_502778.1| - 0.021 14.8 0.1 0.2 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.15 gi|88602600|ref|YP_502778.1| - 0.024 13.4 0.0 0.043 12.6 0.0 1.5 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF815 PF05673.13 gi|88602600|ref|YP_502778.1| - 0.044 13.0 0.2 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|88602600|ref|YP_502778.1| - 0.044 13.2 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|88602600|ref|YP_502778.1| - 0.05 14.0 0.2 1 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|88602600|ref|YP_502778.1| - 0.058 13.9 0.2 0.18 12.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain GBP PF02263.19 gi|88602600|ref|YP_502778.1| - 0.076 12.3 0.1 11 5.2 0.0 2.1 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_PrkA PF08298.11 gi|88602600|ref|YP_502778.1| - 0.09 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain NB-ARC PF00931.22 gi|88602600|ref|YP_502778.1| - 0.093 11.9 0.1 0.27 10.4 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 gi|88602600|ref|YP_502778.1| - 0.11 12.4 0.1 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|88602600|ref|YP_502778.1| - 0.11 12.6 1.4 0.48 10.5 1.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Methyltransf_25 PF13649.6 gi|88602601|ref|YP_502779.1| - 1.4e-10 41.7 0.0 2.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602601|ref|YP_502779.1| - 8.7e-08 32.1 0.0 1.1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602601|ref|YP_502779.1| - 5.9e-06 26.8 0.0 1e-05 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602601|ref|YP_502779.1| - 8.3e-06 25.3 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|88602601|ref|YP_502779.1| - 1.3e-05 25.1 0.0 4.5e-05 23.4 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain GidB PF02527.15 gi|88602601|ref|YP_502779.1| - 1.9e-05 24.1 0.0 2.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|88602601|ref|YP_502779.1| - 3.3e-05 23.5 0.0 5.2e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|88602601|ref|YP_502779.1| - 3.8e-05 24.3 0.0 6.5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88602601|ref|YP_502779.1| - 6.8e-05 22.1 0.0 0.00019 20.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|88602601|ref|YP_502779.1| - 0.0046 16.4 0.0 0.0072 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|88602601|ref|YP_502779.1| - 0.0074 15.6 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.9 gi|88602601|ref|YP_502779.1| - 0.097 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase PCMT PF01135.19 gi|88602601|ref|YP_502779.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Peripla_BP_2 PF01497.18 gi|88602602|ref|YP_502780.1| - 3.1e-31 108.8 0.5 3.6e-31 108.5 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein SRX PF09201.10 gi|88602602|ref|YP_502780.1| - 0.039 13.8 0.0 0.92 9.3 0.0 2.1 2 0 0 2 2 2 0 SRX, signal recognition particle receptor alpha subunit APH PF01636.23 gi|88602603|ref|YP_502781.1| - 6.7e-26 91.7 0.0 8.6e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF364 PF04016.12 gi|88602604|ref|YP_502782.1| - 1.8e-41 141.1 0.0 2.7e-41 140.6 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|88602604|ref|YP_502782.1| - 2.1e-22 79.2 0.0 4.5e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Putative heavy-metal chelation Fe_dep_repress PF01325.19 gi|88602605|ref|YP_502783.1| - 2e-16 59.9 0.1 2.8e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|88602605|ref|YP_502783.1| - 1.7e-13 50.4 0.3 3e-13 49.6 0.1 1.5 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_24 PF13412.6 gi|88602605|ref|YP_502783.1| - 2.1e-07 30.4 0.4 4e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|88602605|ref|YP_502783.1| - 4.1e-05 23.4 0.0 7.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|88602605|ref|YP_502783.1| - 6e-05 23.5 0.1 0.0005 20.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|88602605|ref|YP_502783.1| - 8.3e-05 22.4 0.1 0.00053 19.8 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|88602605|ref|YP_502783.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|88602605|ref|YP_502783.1| - 0.0013 19.0 0.1 0.018 15.4 0.0 2.1 1 1 1 2 2 2 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|88602605|ref|YP_502783.1| - 0.0016 18.2 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|88602605|ref|YP_502783.1| - 0.0059 16.5 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|88602605|ref|YP_502783.1| - 0.006 16.6 0.0 0.022 14.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|88602605|ref|YP_502783.1| - 0.0063 16.5 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|88602605|ref|YP_502783.1| - 0.021 14.6 0.0 0.048 13.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.10 gi|88602605|ref|YP_502783.1| - 0.03 14.3 0.1 0.086 12.8 0.0 1.8 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|88602605|ref|YP_502783.1| - 0.054 13.2 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e RepL PF05732.11 gi|88602605|ref|YP_502783.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_30 PF13556.6 gi|88602605|ref|YP_502783.1| - 0.12 12.2 0.1 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain BcrAD_BadFG PF01869.20 gi|88602606|ref|YP_502784.1| - 5.4e-67 226.1 5.4 2.5e-41 141.9 0.6 2.7 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DUF2229 PF09989.9 gi|88602606|ref|YP_502784.1| - 4.9e-57 193.0 0.0 1.6e-53 181.5 0.0 3.2 3 0 0 3 3 3 1 CoA enzyme activase uncharacterised domain (DUF2229) FGGY_C PF02782.16 gi|88602606|ref|YP_502784.1| - 1.9e-05 24.5 0.3 0.24 11.1 0.0 2.5 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, C-terminal domain Hydant_A_N PF05378.13 gi|88602606|ref|YP_502784.1| - 2.1e-05 24.3 0.2 7.2e-05 22.6 0.2 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region ROK PF00480.20 gi|88602606|ref|YP_502784.1| - 0.00019 21.1 0.3 0.1 12.0 0.0 2.9 3 0 0 3 3 3 2 ROK family FGGY_N PF00370.21 gi|88602606|ref|YP_502784.1| - 0.055 13.0 0.0 0.54 9.8 0.0 2.2 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain DEDD_Tnp_IS110 PF01548.17 gi|88602606|ref|YP_502784.1| - 0.2 11.6 0.0 1.8 8.4 0.0 2.3 2 0 0 2 2 2 0 Transposase FtsA PF14450.6 gi|88602606|ref|YP_502784.1| - 0.8 10.2 2.4 3.5 8.1 0.1 3.0 2 1 0 2 2 2 0 Cell division protein FtsA DGC PF08859.11 gi|88602607|ref|YP_502785.1| - 1.4e-28 99.1 2.9 1.7e-28 98.8 2.9 1.1 1 0 0 1 1 1 1 DGC domain B12D PF06522.11 gi|88602607|ref|YP_502785.1| - 0.16 11.8 0.0 0.46 10.3 0.0 1.8 1 1 1 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit PadR PF03551.14 gi|88602608|ref|YP_502786.1| - 3.5e-17 62.1 0.1 5e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|88602608|ref|YP_502786.1| - 2e-05 25.2 0.5 3.4e-05 24.4 0.1 1.6 2 0 0 2 2 2 1 Replication terminator protein DUF505 PF04458.12 gi|88602608|ref|YP_502786.1| - 0.00011 20.8 0.7 0.00014 20.4 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|88602608|ref|YP_502786.1| - 0.0012 18.9 0.0 0.0038 17.4 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain AphA_like PF14557.6 gi|88602608|ref|YP_502786.1| - 0.003 17.3 0.0 0.0041 16.9 0.0 1.1 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator HxlR PF01638.17 gi|88602608|ref|YP_502786.1| - 0.0057 16.5 0.1 0.01 15.7 0.1 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|88602608|ref|YP_502786.1| - 0.0064 16.5 0.6 0.016 15.2 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|88602608|ref|YP_502786.1| - 0.046 13.9 0.0 0.094 12.9 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain DUF4364 PF14277.6 gi|88602608|ref|YP_502786.1| - 0.05 13.4 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TBPIP PF07106.13 gi|88602608|ref|YP_502786.1| - 0.083 12.8 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain TrmO PF01980.16 gi|88602609|ref|YP_502787.1| - 8.2e-27 93.8 0.0 1.2e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O CNF1 PF05785.12 gi|88602609|ref|YP_502787.1| - 0.2 10.9 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor FmdE PF02663.14 gi|88602610|ref|YP_502788.1| - 3.1e-33 114.6 0.0 4.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|88602610|ref|YP_502788.1| - 6.3e-07 29.2 1.7 1.3e-06 28.3 1.7 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.12 gi|88602610|ref|YP_502788.1| - 0.014 14.9 0.9 0.1 12.1 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding FTCD_C PF04961.12 gi|88602610|ref|YP_502788.1| - 0.024 14.4 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase zf-TFIIB PF13453.6 gi|88602610|ref|YP_502788.1| - 0.025 13.9 2.0 0.17 11.3 1.4 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.7 gi|88602610|ref|YP_502788.1| - 0.051 13.6 0.3 0.11 12.5 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|88602610|ref|YP_502788.1| - 0.13 11.7 2.1 4.2 6.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|88602610|ref|YP_502788.1| - 0.31 10.9 2.6 1.4 8.7 2.7 2.0 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.6 gi|88602610|ref|YP_502788.1| - 0.38 10.8 2.7 2.5 8.1 0.7 2.4 2 0 0 2 2 2 0 YhfH-like protein Methyltransf_31 PF13847.6 gi|88602611|ref|YP_502789.1| - 3.7e-21 75.5 0.0 4.4e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602611|ref|YP_502789.1| - 2.9e-19 69.6 0.0 4.3e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602611|ref|YP_502789.1| - 9e-19 67.7 0.0 1.2e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|88602611|ref|YP_502789.1| - 4e-18 65.9 0.0 7.2e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602611|ref|YP_502789.1| - 1.2e-10 42.0 0.0 1.7e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|88602611|ref|YP_502789.1| - 9.4e-08 31.7 0.0 9.4e-07 28.5 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|88602611|ref|YP_502789.1| - 7.1e-07 29.2 0.0 1.2e-06 28.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88602611|ref|YP_502789.1| - 2.2e-06 27.6 0.0 3.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF938 PF06080.12 gi|88602611|ref|YP_502789.1| - 8.6e-06 25.7 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) CMAS PF02353.20 gi|88602611|ref|YP_502789.1| - 1e-05 25.0 0.0 1.5e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|88602611|ref|YP_502789.1| - 4.3e-05 23.1 0.0 6.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|88602611|ref|YP_502789.1| - 0.00017 21.7 0.0 0.00027 21.1 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|88602611|ref|YP_502789.1| - 0.00033 20.6 0.0 0.0017 18.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltr_RsmB-F PF01189.17 gi|88602611|ref|YP_502789.1| - 0.00046 19.9 0.0 0.0037 16.9 0.0 1.9 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|88602611|ref|YP_502789.1| - 0.00056 19.9 0.0 0.00089 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|88602611|ref|YP_502789.1| - 0.00059 19.4 0.0 0.00095 18.7 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_2 PF00891.18 gi|88602611|ref|YP_502789.1| - 0.0011 18.3 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Fibrillarin PF01269.17 gi|88602611|ref|YP_502789.1| - 0.0012 18.0 0.0 0.0015 17.7 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin TehB PF03848.14 gi|88602611|ref|YP_502789.1| - 0.005 16.3 0.0 0.0063 15.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB N6_N4_Mtase PF01555.18 gi|88602611|ref|YP_502789.1| - 0.0076 16.0 0.2 1.2 8.8 0.1 2.1 2 0 0 2 2 2 1 DNA methylase DREV PF05219.12 gi|88602611|ref|YP_502789.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase DUF43 PF01861.16 gi|88602611|ref|YP_502789.1| - 0.015 14.6 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain RrnaAD PF00398.20 gi|88602611|ref|YP_502789.1| - 0.02 14.0 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|88602611|ref|YP_502789.1| - 0.045 13.2 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|88602611|ref|YP_502789.1| - 0.084 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|88602611|ref|YP_502789.1| - 0.1 11.1 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ABC_tran PF00005.27 gi|88602612|ref|YP_502790.1| - 1.9e-32 112.7 0.0 2.9e-32 112.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|88602612|ref|YP_502790.1| - 2.8e-11 43.5 0.0 1.3e-10 41.5 0.0 2.2 3 0 0 3 3 2 1 TOBE domain TOBE_2 PF08402.10 gi|88602612|ref|YP_502790.1| - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|88602612|ref|YP_502790.1| - 5.6e-05 23.1 3.5 0.01 15.7 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88602612|ref|YP_502790.1| - 0.00014 21.4 0.1 0.0019 17.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|88602612|ref|YP_502790.1| - 0.0017 18.7 0.5 0.0098 16.2 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|88602612|ref|YP_502790.1| - 0.0019 18.7 0.0 0.0042 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|88602612|ref|YP_502790.1| - 0.0026 17.2 0.0 0.0085 15.5 0.0 1.7 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|88602612|ref|YP_502790.1| - 0.0062 15.6 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|88602612|ref|YP_502790.1| - 0.036 12.8 0.3 0.53 9.0 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|88602612|ref|YP_502790.1| - 0.041 14.3 0.0 0.084 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|88602612|ref|YP_502790.1| - 0.041 13.6 0.0 0.099 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain HAS-barrel PF09378.10 gi|88602612|ref|YP_502790.1| - 0.047 13.8 0.2 1.2 9.4 0.0 2.5 2 1 0 2 2 2 0 HAS barrel domain SbcCD_C PF13558.6 gi|88602612|ref|YP_502790.1| - 0.062 13.5 0.1 1.8 8.9 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|88602612|ref|YP_502790.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TniB PF05621.11 gi|88602612|ref|YP_502790.1| - 0.15 11.5 0.1 21 4.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|88602612|ref|YP_502790.1| - 0.15 12.0 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|88602612|ref|YP_502790.1| - 0.16 12.4 1.1 1.8 9.0 1.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.22 gi|88602613|ref|YP_502791.1| - 2.1e-16 60.2 19.9 2.1e-16 60.2 19.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SUa-2TM PF18179.1 gi|88602613|ref|YP_502791.1| - 0.71 9.1 4.1 1.1 8.4 0.7 2.2 2 0 0 2 2 2 0 SMODS- and Ubiquitin system-associated 2TM effector domain DUF4492 PF14899.6 gi|88602613|ref|YP_502791.1| - 1.2 9.1 0.1 1.2 9.1 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4492) TrmO PF01980.16 gi|88602614|ref|YP_502792.1| - 2.8e-36 124.3 0.0 3.6e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_11 PF13531.6 gi|88602615|ref|YP_502793.1| - 6.4e-45 153.7 0.0 7.5e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88602615|ref|YP_502793.1| - 6.7e-07 29.6 3.8 8e-06 26.0 3.8 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|88602615|ref|YP_502793.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_6 PF13343.6 gi|88602615|ref|YP_502793.1| - 0.00085 18.8 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein FtsZ_C PF12327.8 gi|88602615|ref|YP_502793.1| - 0.017 15.4 0.1 0.43 10.9 0.0 2.4 2 0 0 2 2 2 0 FtsZ family, C-terminal domain SBP_bac_8 PF13416.6 gi|88602615|ref|YP_502793.1| - 0.031 14.1 1.3 0.34 10.7 0.2 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein RVT_1 PF00078.27 gi|88602616|ref|YP_502794.1| - 1.7e-44 152.0 0.0 6.2e-44 150.2 0.0 1.9 2 0 0 2 2 2 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88602616|ref|YP_502794.1| - 3.6e-29 100.9 1.0 9.1e-29 99.6 1.0 1.7 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88602616|ref|YP_502794.1| - 6.3e-24 83.8 10.1 6.3e-24 83.8 10.1 2.2 2 0 0 2 2 2 1 Group II intron, maturase-specific domain Intron_maturas2 PF01348.21 gi|88602616|ref|YP_502794.1| - 0.0025 17.8 2.3 0.013 15.4 0.8 2.7 3 0 0 3 3 3 1 Type II intron maturase Methyltransf_2 PF00891.18 gi|88602617|ref|YP_502795.1| - 3.4e-15 55.9 0.0 5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|88602617|ref|YP_502795.1| - 1.5e-09 37.7 0.3 3.7e-09 36.5 0.1 1.7 2 0 0 2 2 2 1 Dimerisation domain Methyltransf_31 PF13847.6 gi|88602617|ref|YP_502795.1| - 9.6e-09 35.2 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602617|ref|YP_502795.1| - 7.7e-08 33.0 0.0 1.7e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602617|ref|YP_502795.1| - 2.7e-07 31.3 0.0 7.6e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602617|ref|YP_502795.1| - 4.5e-07 29.8 0.0 7.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88602617|ref|YP_502795.1| - 2.1e-06 27.4 0.0 3.9e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|88602617|ref|YP_502795.1| - 3.8e-06 27.4 0.0 6.7e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88602617|ref|YP_502795.1| - 7.1e-06 25.6 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|88602617|ref|YP_502795.1| - 7.4e-05 22.6 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase GidB PF02527.15 gi|88602617|ref|YP_502795.1| - 0.0041 16.5 0.1 0.021 14.1 0.0 2.0 2 1 0 2 2 2 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|88602617|ref|YP_502795.1| - 0.015 14.6 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|88602617|ref|YP_502795.1| - 0.015 16.3 0.0 1.1 10.3 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|88602617|ref|YP_502795.1| - 0.044 13.7 0.0 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain RXLR_WY PF18634.1 gi|88602617|ref|YP_502795.1| - 0.052 13.5 0.2 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 RXLR phytopathogen effector protein WY-domain Methyltransf_32 PF13679.6 gi|88602617|ref|YP_502795.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain EamA PF00892.20 gi|88602618|ref|YP_502796.1| - 5.8e-27 94.5 26.8 3.6e-16 59.6 8.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|88602618|ref|YP_502796.1| - 0.00017 20.9 0.1 0.0003 20.1 0.1 1.4 1 0 0 1 1 1 1 Purine nucleobase transmembrane transport AAA_14 PF13173.6 gi|88602619|ref|YP_502797.1| - 6.7e-37 126.4 0.0 1.3e-36 125.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88602619|ref|YP_502797.1| - 1.3e-06 28.6 0.0 4e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA PF00004.29 gi|88602619|ref|YP_502797.1| - 0.00018 21.9 0.0 0.0019 18.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88602619|ref|YP_502797.1| - 0.00032 21.0 0.0 0.092 13.0 0.0 2.6 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|88602619|ref|YP_502797.1| - 0.0006 19.8 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|88602619|ref|YP_502797.1| - 0.0019 18.6 0.0 0.0058 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|88602619|ref|YP_502797.1| - 0.0099 15.6 0.0 1.9 8.2 0.0 3.3 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|88602619|ref|YP_502797.1| - 0.011 15.5 0.0 0.029 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|88602619|ref|YP_502797.1| - 0.019 15.5 0.0 0.16 12.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|88602619|ref|YP_502797.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 gi|88602619|ref|YP_502797.1| - 0.067 13.7 0.1 0.14 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|88602619|ref|YP_502797.1| - 0.069 12.4 0.0 0.21 10.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Mrr_cat PF04471.12 gi|88602619|ref|YP_502797.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease PRD_Mga PF08270.11 gi|88602619|ref|YP_502797.1| - 0.16 11.6 0.3 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) PRD domain DJ-1_PfpI PF01965.24 gi|88602621|ref|YP_502799.1| - 9e-20 71.1 0.0 1.1e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|88602621|ref|YP_502799.1| - 0.0012 18.5 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain FeoA PF04023.14 gi|88602622|ref|YP_502800.1| - 3e-18 65.9 0.0 3.3e-18 65.7 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|88602623|ref|YP_502801.1| - 2.1e-13 50.3 0.4 2.4e-13 50.2 0.4 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|88602624|ref|YP_502802.1| - 1.6e-64 216.1 0.1 3e-64 215.3 0.1 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|88602624|ref|YP_502802.1| - 1e-45 154.6 16.7 2.8e-31 108.1 3.0 2.6 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|88602624|ref|YP_502802.1| - 1.2e-19 69.7 1.6 1.2e-19 69.7 1.6 3.3 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|88602624|ref|YP_502802.1| - 6.7e-16 58.4 0.0 1.2e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|88602624|ref|YP_502802.1| - 0.00013 22.4 0.0 0.00029 21.3 0.0 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|88602624|ref|YP_502802.1| - 0.00034 20.0 0.0 0.00054 19.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|88602624|ref|YP_502802.1| - 0.0011 18.6 0.3 0.037 13.6 0.3 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|88602624|ref|YP_502802.1| - 0.0015 18.4 1.0 1.6 8.6 0.2 2.2 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|88602624|ref|YP_502802.1| - 0.0017 18.1 0.1 0.003 17.3 0.1 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|88602624|ref|YP_502802.1| - 0.0039 16.2 0.2 0.36 9.8 0.0 2.9 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 gi|88602624|ref|YP_502802.1| - 0.0042 16.5 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|88602624|ref|YP_502802.1| - 0.0043 16.9 0.3 0.044 13.5 0.1 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|88602624|ref|YP_502802.1| - 0.0044 16.6 0.0 0.033 13.8 0.0 2.1 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|88602624|ref|YP_502802.1| - 0.026 14.0 0.1 0.087 12.3 0.1 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family Roc PF08477.13 gi|88602624|ref|YP_502802.1| - 0.039 14.2 0.0 0.075 13.3 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase FTHFS PF01268.19 gi|88602624|ref|YP_502802.1| - 0.11 10.6 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase DUF4131 PF13567.6 gi|88602625|ref|YP_502803.1| - 7.1 6.3 6.7 1.5 8.4 3.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HTH_24 PF13412.6 gi|88602626|ref|YP_502804.1| - 0.031 13.8 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|88602626|ref|YP_502804.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain FeoC PF09012.10 gi|88602626|ref|YP_502804.1| - 2 8.5 12.7 6 7.0 12.7 1.7 1 1 0 1 1 1 0 FeoC like transcriptional regulator Fe_dep_repress PF01325.19 gi|88602627|ref|YP_502805.1| - 3.8e-11 43.0 0.1 1.2e-10 41.4 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|88602627|ref|YP_502805.1| - 1.3e-10 41.2 0.1 4.1e-10 39.6 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HATPase_c PF02518.26 gi|88602627|ref|YP_502805.1| - 7.8e-10 39.3 0.0 1.7e-09 38.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MarR_2 PF12802.7 gi|88602627|ref|YP_502805.1| - 0.0012 18.7 0.1 0.004 17.0 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|88602627|ref|YP_502805.1| - 0.0057 16.5 0.2 0.025 14.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HATPase_c_3 PF13589.6 gi|88602627|ref|YP_502805.1| - 0.023 14.5 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88602627|ref|YP_502805.1| - 0.023 14.7 0.2 0.053 13.6 0.2 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain AbiEi_4 PF13338.6 gi|88602627|ref|YP_502805.1| - 0.042 14.0 0.0 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TrmB PF01978.19 gi|88602627|ref|YP_502805.1| - 0.07 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|88602627|ref|YP_502805.1| - 0.076 12.8 0.0 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain SPOB_a PF14689.6 gi|88602627|ref|YP_502805.1| - 0.11 12.3 0.2 0.3 10.8 0.2 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Rrf2 PF02082.20 gi|88602627|ref|YP_502805.1| - 0.13 12.7 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|88602628|ref|YP_502806.1| - 6.7e-12 45.2 0.2 1.4e-11 44.2 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|88602628|ref|YP_502806.1| - 1.2e-09 37.9 0.5 2.1e-09 37.1 0.2 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|88602628|ref|YP_502806.1| - 3.4e-07 29.7 0.0 6.1e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|88602628|ref|YP_502806.1| - 2.1e-06 28.1 0.8 1.1e-05 25.8 0.9 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|88602628|ref|YP_502806.1| - 0.00065 19.5 0.1 0.0025 17.6 0.0 2.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|88602628|ref|YP_502806.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|88602628|ref|YP_502806.1| - 0.029 14.2 0.1 0.056 13.3 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|88602628|ref|YP_502806.1| - 0.05 13.5 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB E1-E2_ATPase PF00122.20 gi|88602629|ref|YP_502807.1| - 5.5e-42 143.3 0.0 5.5e-42 143.3 0.0 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|88602629|ref|YP_502807.1| - 5e-36 125.0 0.0 8.5e-36 124.2 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PAS PF00989.25 gi|88602630|ref|YP_502808.1| - 1e-56 189.8 0.2 1.1e-12 48.0 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|88602630|ref|YP_502808.1| - 8.5e-54 180.2 0.0 4.8e-11 42.8 0.0 6.4 6 0 0 6 6 6 5 PAS domain PAS_4 PF08448.10 gi|88602630|ref|YP_502808.1| - 5.9e-42 142.4 0.0 3.2e-09 37.0 0.0 6.5 6 0 0 6 6 6 6 PAS fold PAS_3 PF08447.12 gi|88602630|ref|YP_502808.1| - 4.3e-37 126.3 0.0 3e-14 53.1 0.0 6.6 6 0 0 6 6 6 4 PAS fold PAS_8 PF13188.7 gi|88602630|ref|YP_502808.1| - 1.2e-35 120.9 0.0 2e-08 34.0 0.0 6.5 6 0 0 6 6 6 5 PAS domain Response_reg PF00072.24 gi|88602630|ref|YP_502808.1| - 1.2e-18 67.3 0.0 3.8e-18 65.7 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602630|ref|YP_502808.1| - 1.7e-12 47.8 0.2 7.2e-12 45.8 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|88602630|ref|YP_502808.1| - 1.2e-07 31.9 0.2 0.78 9.9 0.0 6.4 6 0 0 6 6 6 1 PAS fold MEKHLA PF08670.11 gi|88602630|ref|YP_502808.1| - 0.0014 18.5 0.0 1.5 8.7 0.0 3.1 3 0 0 3 3 3 2 MEKHLA domain HATPase_c_2 PF13581.6 gi|88602630|ref|YP_502808.1| - 0.0032 17.4 0.0 0.0072 16.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain sCache_like PF16736.5 gi|88602630|ref|YP_502808.1| - 0.05 13.7 1.0 0.72 10.0 0.0 3.1 4 0 0 4 4 4 0 Single Cache-like MLTR_LBD PF17765.1 gi|88602630|ref|YP_502808.1| - 0.12 12.5 0.0 7.5 6.7 0.0 3.1 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain PAS PF00989.25 gi|88602631|ref|YP_502809.1| - 2.1e-61 204.9 6.3 3.6e-15 55.9 0.0 8.3 8 0 0 8 8 8 6 PAS fold PAS_9 PF13426.7 gi|88602631|ref|YP_502809.1| - 4e-53 178.0 5.9 6.4e-11 42.4 0.0 7.9 7 0 0 7 7 7 7 PAS domain PAS_4 PF08448.10 gi|88602631|ref|YP_502809.1| - 3e-52 175.5 0.0 2.3e-11 43.9 0.0 8.2 7 1 0 7 7 7 6 PAS fold PAS_3 PF08447.12 gi|88602631|ref|YP_502809.1| - 2.1e-49 165.7 4.0 8.4e-21 74.1 0.2 6.7 6 0 0 6 6 6 5 PAS fold PocR PF10114.9 gi|88602631|ref|YP_502809.1| - 7.9e-47 159.0 1.8 7.3e-46 155.9 0.0 3.5 4 0 0 4 4 4 1 Sensory domain found in PocR PAS_8 PF13188.7 gi|88602631|ref|YP_502809.1| - 1.3e-39 133.6 3.6 3.6e-07 30.0 0.0 7.9 8 0 0 8 8 8 5 PAS domain HATPase_c PF02518.26 gi|88602631|ref|YP_502809.1| - 4.2e-10 40.1 0.0 1.3e-09 38.6 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88602631|ref|YP_502809.1| - 3.1e-05 24.1 0.1 0.0019 18.3 0.0 3.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|88602631|ref|YP_502809.1| - 0.00013 22.1 0.1 34 4.6 0.0 6.2 5 0 0 5 5 5 0 PAS fold NVEALA PF14055.6 gi|88602631|ref|YP_502809.1| - 0.014 15.3 0.0 0.038 14.0 0.0 1.7 1 0 0 1 1 1 0 NVEALA protein HATPase_c_3 PF13589.6 gi|88602631|ref|YP_502809.1| - 0.017 15.0 0.0 0.053 13.4 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mod_r PF07200.13 gi|88602631|ref|YP_502809.1| - 0.034 14.3 13.4 0.64 10.1 2.9 4.0 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein HATPase_c_2 PF13581.6 gi|88602631|ref|YP_502809.1| - 0.047 13.6 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Spc24 PF08286.11 gi|88602631|ref|YP_502809.1| - 0.087 13.1 8.3 0.13 12.5 0.5 3.6 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 UPF0240 PF06784.11 gi|88602631|ref|YP_502809.1| - 0.2 11.7 2.4 0.88 9.6 0.0 2.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0240) HisKA PF00512.25 gi|88602631|ref|YP_502809.1| - 0.4 10.8 13.4 1.4 9.1 0.2 4.8 5 0 0 5 5 5 0 His Kinase A (phospho-acceptor) domain SecA_SW PF07516.13 gi|88602631|ref|YP_502809.1| - 1.3 9.0 8.5 0.35 10.9 0.4 3.1 3 0 0 3 3 3 0 SecA Wing and Scaffold domain AAA-ATPase_like PF09820.9 gi|88602632|ref|YP_502810.1| - 1.2e-100 336.6 0.0 1.6e-100 336.2 0.0 1.2 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602632|ref|YP_502810.1| - 6.7e-28 96.7 0.0 3.5e-27 94.4 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF3903 PF13043.6 gi|88602632|ref|YP_502810.1| - 0.2 11.5 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) Phosphonate-bd PF12974.7 gi|88602633|ref|YP_502811.1| - 4.6e-40 137.7 0.0 6.6e-40 137.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PAS_3 PF08447.12 gi|88602633|ref|YP_502811.1| - 7.7e-19 67.8 0.3 6.1e-18 64.9 0.1 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|88602633|ref|YP_502811.1| - 1.3e-10 41.7 0.0 3.1e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SBP_bac_3 PF00497.20 gi|88602633|ref|YP_502811.1| - 2.4e-07 30.4 0.0 8.8e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PAS_9 PF13426.7 gi|88602633|ref|YP_502811.1| - 6e-06 26.5 0.2 2.9e-05 24.3 0.1 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|88602633|ref|YP_502811.1| - 2.4e-05 24.3 0.0 0.00067 19.6 0.0 2.5 2 0 0 2 2 2 1 PAS fold NMT1 PF09084.11 gi|88602633|ref|YP_502811.1| - 0.0037 17.2 0.0 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 NMT1/THI5 like PAS_4 PF08448.10 gi|88602633|ref|YP_502811.1| - 0.0062 16.8 0.0 0.016 15.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|88602633|ref|YP_502811.1| - 0.026 14.4 0.0 0.081 12.8 0.0 1.7 2 0 0 2 2 2 0 GHKL domain AFOR_C PF01314.18 gi|88602633|ref|YP_502811.1| - 0.038 13.0 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 PAS_3 PF08447.12 gi|88602634|ref|YP_502812.1| - 2.5e-50 168.7 0.1 4.8e-27 94.1 0.6 5.1 4 1 0 4 4 4 3 PAS fold PAS PF00989.25 gi|88602634|ref|YP_502812.1| - 4e-38 129.9 0.1 4.9e-10 39.4 0.0 5.6 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|88602634|ref|YP_502812.1| - 2.9e-34 117.4 0.0 3.3e-12 46.6 0.0 5.1 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.6 gi|88602634|ref|YP_502812.1| - 6.9e-28 97.7 0.0 7.7e-27 94.3 0.0 2.7 3 1 1 4 4 3 1 GAF domain PAS_4 PF08448.10 gi|88602634|ref|YP_502812.1| - 2.4e-26 92.2 0.0 1.4e-09 38.2 0.0 4.7 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|88602634|ref|YP_502812.1| - 5.5e-21 74.1 0.0 2.1e-06 27.6 0.0 4.9 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|88602634|ref|YP_502812.1| - 9.1e-20 70.9 0.0 3.1e-19 69.2 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602634|ref|YP_502812.1| - 5.9e-08 33.2 0.0 1.5e-07 31.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88602634|ref|YP_502812.1| - 0.00039 20.5 0.0 0.005 16.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|88602634|ref|YP_502812.1| - 0.00077 19.6 0.1 3.3 7.9 0.0 4.6 4 0 0 4 4 4 1 PAS fold HisKA PF00512.25 gi|88602634|ref|YP_502812.1| - 0.00089 19.2 0.0 0.0067 16.4 0.0 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|88602634|ref|YP_502812.1| - 0.038 14.6 0.0 0.099 13.3 0.0 1.6 1 0 0 1 1 1 0 GAF domain HATPase_c_2 PF13581.6 gi|88602634|ref|YP_502812.1| - 0.043 13.8 0.0 0.14 12.1 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|88602634|ref|YP_502812.1| - 0.045 13.5 0.1 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain MLTR_LBD PF17765.1 gi|88602634|ref|YP_502812.1| - 0.16 12.1 0.0 20 5.2 0.0 2.7 2 1 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain Taxilin PF09728.9 gi|88602634|ref|YP_502812.1| - 6.4 5.9 8.3 0.1 11.7 0.3 2.0 3 0 0 3 3 3 0 Myosin-like coiled-coil protein APG6_N PF17675.1 gi|88602634|ref|YP_502812.1| - 8.4 6.9 8.1 10 6.7 4.2 2.7 3 0 0 3 3 3 0 Apg6 coiled-coil region PAS_4 PF08448.10 gi|88602635|ref|YP_502813.1| - 3.1e-35 120.7 0.0 2.7e-10 40.5 0.0 4.7 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|88602635|ref|YP_502813.1| - 4.2e-27 94.4 0.0 3.7e-05 23.9 0.0 5.8 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|88602635|ref|YP_502813.1| - 1.7e-26 92.5 0.0 6.5e-12 45.5 0.0 5.9 5 1 0 5 5 5 3 PAS fold Response_reg PF00072.24 gi|88602635|ref|YP_502813.1| - 1.2e-19 70.5 0.0 3.3e-19 69.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|88602635|ref|YP_502813.1| - 9.3e-15 54.7 0.1 1.3e-05 25.4 0.0 3.9 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|88602635|ref|YP_502813.1| - 5.2e-14 51.9 0.0 0.021 14.9 0.0 5.6 5 0 0 5 5 5 3 PAS domain HATPase_c PF02518.26 gi|88602635|ref|YP_502813.1| - 4.8e-09 36.7 0.3 9.5e-09 35.8 0.3 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|88602635|ref|YP_502813.1| - 1.2e-08 35.7 0.0 3.2e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|88602635|ref|YP_502813.1| - 2.7e-05 24.1 6.4 0.0051 16.8 0.0 3.9 4 0 0 4 4 4 2 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|88602635|ref|YP_502813.1| - 0.0023 18.2 0.0 0.0099 16.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|88602635|ref|YP_502813.1| - 0.022 15.1 0.0 0.073 13.4 0.0 1.9 2 0 0 2 2 2 0 GAF domain SPOB_a PF14689.6 gi|88602635|ref|YP_502813.1| - 0.031 14.0 2.9 1.3 8.7 0.2 3.1 2 1 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain FIN1 PF17300.2 gi|88602635|ref|YP_502813.1| - 0.17 11.4 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Filaments in between nuclei protein-1 MCPsignal PF00015.21 gi|88602637|ref|YP_502815.1| - 1.2e-41 142.4 24.9 1.2e-41 142.4 24.9 2.9 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|88602637|ref|YP_502815.1| - 0.00039 20.7 14.8 0.14 12.5 1.3 3.6 3 1 1 4 4 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 BORCS7 PF16088.5 gi|88602637|ref|YP_502815.1| - 0.012 15.8 15.2 0.08 13.2 2.7 3.5 2 2 1 3 3 3 0 BLOC-1-related complex sub-unit 7 Prefoldin_2 PF01920.20 gi|88602637|ref|YP_502815.1| - 0.015 15.2 6.1 0.79 9.7 0.1 3.9 4 0 0 4 4 4 0 Prefoldin subunit DUF948 PF06103.11 gi|88602637|ref|YP_502815.1| - 0.016 15.4 14.7 0.024 14.9 1.5 4.2 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) H-kinase_dim PF02895.14 gi|88602637|ref|YP_502815.1| - 0.021 15.2 7.4 0.043 14.2 0.4 3.8 3 2 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain TPR_MLP1_2 PF07926.12 gi|88602637|ref|YP_502815.1| - 0.035 14.2 15.6 0.053 13.6 8.2 2.7 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein CHAD PF05235.14 gi|88602637|ref|YP_502815.1| - 0.037 14.0 0.2 0.11 12.4 0.1 1.7 1 1 1 2 2 2 0 CHAD domain AIP3 PF03915.13 gi|88602637|ref|YP_502815.1| - 0.059 12.4 9.6 0.083 12.0 9.3 1.5 1 1 0 1 1 1 0 Actin interacting protein 3 ISG65-75 PF11727.8 gi|88602637|ref|YP_502815.1| - 0.073 12.3 10.5 0.56 9.4 0.7 2.4 1 1 1 2 2 2 0 Invariant surface glycoprotein HTH_36 PF13730.6 gi|88602637|ref|YP_502815.1| - 0.15 12.1 0.0 0.49 10.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain LMBR1 PF04791.16 gi|88602637|ref|YP_502815.1| - 0.27 10.1 2.1 0.36 9.7 2.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Syntaxin_2 PF14523.6 gi|88602637|ref|YP_502815.1| - 0.36 11.2 11.9 12 6.3 2.1 4.0 1 1 2 3 3 3 0 Syntaxin-like protein DUF1664 PF07889.12 gi|88602637|ref|YP_502815.1| - 0.37 10.8 14.3 0.058 13.4 2.9 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|88602637|ref|YP_502815.1| - 1.1 9.3 18.1 2.9 7.9 12.3 2.8 2 1 0 2 2 2 0 Laminin Domain II Fib_alpha PF08702.10 gi|88602637|ref|YP_502815.1| - 1.1 9.4 15.7 1.6 8.9 4.4 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Corona_S2 PF01601.16 gi|88602637|ref|YP_502815.1| - 1.4 7.4 8.0 1.7 7.0 8.0 1.3 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein TBCC_N PF16752.5 gi|88602637|ref|YP_502815.1| - 2.9 8.3 10.6 0.81 10.1 3.2 3.0 2 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain APG6_N PF17675.1 gi|88602637|ref|YP_502815.1| - 2.9 8.4 7.8 9.8 6.7 7.8 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region FlgN PF05130.12 gi|88602637|ref|YP_502815.1| - 4.8 7.7 13.9 5.5 7.5 2.5 2.4 1 1 1 2 2 2 0 FlgN protein Spc7 PF08317.11 gi|88602637|ref|YP_502815.1| - 6.5 5.5 13.3 6.7 5.5 11.3 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF724 PF05266.14 gi|88602637|ref|YP_502815.1| - 8.7 6.1 8.8 14 5.5 4.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF724) UvrD-helicase PF00580.21 gi|88602638|ref|YP_502816.1| - 5.8e-45 154.2 1.2 1.4e-23 84.0 0.1 2.1 1 1 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|88602638|ref|YP_502816.1| - 3.8e-27 95.4 0.0 8.1e-27 94.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|88602638|ref|YP_502816.1| - 2e-11 43.9 0.0 3.7e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|88602638|ref|YP_502816.1| - 4.6e-07 29.7 0.0 0.0024 17.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|88602638|ref|YP_502816.1| - 0.00043 20.1 0.1 0.018 14.8 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|88602638|ref|YP_502816.1| - 0.0006 19.3 0.1 0.0053 16.2 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein AAA_14 PF13173.6 gi|88602638|ref|YP_502816.1| - 0.082 12.9 0.4 12 5.9 0.1 2.9 3 1 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|88602638|ref|YP_502816.1| - 0.15 11.4 0.1 8.3 5.7 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family UvrD_C PF13361.6 gi|88602639|ref|YP_502817.1| - 2.8e-22 79.6 0.0 4.1e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|88602639|ref|YP_502817.1| - 2.9e-21 76.5 0.0 3.6e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|88602639|ref|YP_502817.1| - 7.2e-11 41.8 0.0 0.00053 19.8 0.0 2.4 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Cas_Cas4 PF01930.17 gi|88602639|ref|YP_502817.1| - 1.3e-09 38.4 0.1 2.4e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF2800 PF10926.8 gi|88602639|ref|YP_502817.1| - 1.3e-05 24.6 0.5 2.1e-05 24.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.18 gi|88602639|ref|YP_502817.1| - 0.058 13.1 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KilA-N PF04383.13 gi|88602640|ref|YP_502818.1| - 5.2e-10 39.2 0.1 5.6e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 KilA-N domain DUF104 PF01954.16 gi|88602641|ref|YP_502819.1| - 0.0033 17.8 0.0 0.0039 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|88602642|ref|YP_502820.1| - 2e-07 31.5 0.0 2.2e-07 31.4 0.0 1.0 1 0 0 1 1 1 1 PIN domain AGOG PF09171.10 gi|88602642|ref|YP_502820.1| - 0.03 13.6 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 N-glycosylase/DNA lyase Med5 PF08689.10 gi|88602643|ref|YP_502821.1| - 0.021 12.7 0.0 0.025 12.4 0.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit Med5 DUF3696 PF12476.8 gi|88602644|ref|YP_502822.1| - 0.066 13.6 0.0 0.2 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3696) Flag1_repress PF03614.13 gi|88602644|ref|YP_502822.1| - 0.068 13.0 0.2 0.72 9.6 0.2 2.1 1 1 0 1 1 1 0 Repressor of phase-1 flagellin PspA_IM30 PF04012.12 gi|88602645|ref|YP_502823.1| - 0.0012 18.5 3.0 0.0018 17.9 3.0 1.2 1 0 0 1 1 1 1 PspA/IM30 family Baculo_PEP_C PF04513.12 gi|88602645|ref|YP_502823.1| - 0.0096 16.0 3.2 0.017 15.2 3.2 1.4 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus SlyX PF04102.12 gi|88602645|ref|YP_502823.1| - 0.016 15.8 2.2 0.27 11.9 3.0 2.2 2 0 0 2 2 2 0 SlyX Spc7 PF08317.11 gi|88602645|ref|YP_502823.1| - 0.023 13.6 3.2 0.034 13.0 3.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF812 PF05667.11 gi|88602645|ref|YP_502823.1| - 0.027 13.4 0.6 0.03 13.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) XLF PF09302.11 gi|88602645|ref|YP_502823.1| - 0.028 14.6 0.1 0.048 13.8 0.1 1.3 1 0 0 1 1 1 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component FAM76 PF16046.5 gi|88602645|ref|YP_502823.1| - 0.029 13.7 0.8 0.037 13.4 0.8 1.1 1 0 0 1 1 1 0 FAM76 protein AAA_13 PF13166.6 gi|88602645|ref|YP_502823.1| - 0.038 12.6 0.5 0.049 12.3 0.5 1.1 1 0 0 1 1 1 0 AAA domain YPEB PF14620.6 gi|88602645|ref|YP_502823.1| - 0.044 13.1 1.3 0.066 12.6 1.3 1.2 1 0 0 1 1 1 0 YpeB sporulation DUF4407 PF14362.6 gi|88602645|ref|YP_502823.1| - 0.11 11.8 2.7 0.17 11.2 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FlxA PF14282.6 gi|88602645|ref|YP_502823.1| - 0.15 12.0 6.5 0.36 10.8 6.5 1.5 1 0 0 1 1 1 0 FlxA-like protein YlbD_coat PF14071.6 gi|88602645|ref|YP_502823.1| - 0.18 12.0 1.8 1.9 8.7 1.8 2.1 2 0 0 2 2 2 0 Putative coat protein EzrA PF06160.12 gi|88602645|ref|YP_502823.1| - 0.25 9.5 4.3 0.37 8.9 4.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA LPP PF04728.13 gi|88602645|ref|YP_502823.1| - 0.27 11.6 5.2 9 6.8 5.2 2.4 1 1 0 1 1 1 0 Lipoprotein leucine-zipper ADPrib_exo_Tox PF03496.14 gi|88602646|ref|YP_502824.1| - 0.0002 20.7 0.0 0.0004 19.8 0.0 1.5 1 1 0 1 1 1 1 ADP-ribosyltransferase exoenzyme Cas_Cas2CT1978 PF09707.10 gi|88602655|ref|YP_502833.1| - 3e-35 120.1 0.1 3.4e-35 120.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.16 gi|88602656|ref|YP_502834.1| - 6.6e-14 51.7 0.0 7.6e-08 31.8 0.0 2.1 1 1 1 2 2 2 2 CRISPR associated protein Cas1 CRISPR_assoc PF08798.11 gi|88602657|ref|YP_502835.1| - 5.1e-51 173.9 0.0 5.8e-51 173.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein TetR_C_17 PF17922.1 gi|88602657|ref|YP_502835.1| - 0.094 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Cas_Cas5d PF09704.10 gi|88602658|ref|YP_502836.1| - 1.1e-31 110.4 0.0 1.2e-31 110.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.10 gi|88602659|ref|YP_502837.1| - 7e-96 321.9 0.1 1.2e-95 321.1 0.1 1.3 1 0 0 1 1 1 1 CT1975-like protein Cas_Cas7 PF05107.12 gi|88602659|ref|YP_502837.1| - 0.004 16.7 0.0 0.013 15.1 0.0 1.8 1 1 0 1 1 1 1 CRISPR-associated protein Cas7 InPase PF18823.1 gi|88602659|ref|YP_502837.1| - 0.037 13.7 0.3 0.072 12.8 0.3 1.4 1 0 0 1 1 1 0 Inorganic Pyrophosphatase Vert_HS_TF PF06546.11 gi|88602659|ref|YP_502837.1| - 9.4 5.8 6.6 23 4.5 6.6 1.6 1 1 0 1 1 1 0 Vertebrate heat shock transcription factor CRISPR_Cse2 PF09485.10 gi|88602660|ref|YP_502838.1| - 2.4e-12 47.6 0.0 3.1e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) CRISPR_Cse1 PF09481.10 gi|88602661|ref|YP_502839.1| - 1.9e-94 317.3 0.0 2.4e-94 317.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) ADPrib_exo_Tox PF03496.14 gi|88602662|ref|YP_502840.1| - 1.1e-05 24.9 3.1 1.4e-05 24.5 3.1 1.1 1 0 0 1 1 1 1 ADP-ribosyltransferase exoenzyme DUF2281 PF10047.9 gi|88602663|ref|YP_502841.1| - 0.00027 21.6 0.1 0.00039 21.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) ATP-synt_E_2 PF08112.11 gi|88602664|ref|YP_502842.1| - 0.036 14.3 0.8 0.052 13.8 0.8 1.3 1 0 0 1 1 1 0 ATP synthase epsilon subunit PIN PF01850.21 gi|88602666|ref|YP_502844.1| - 4.1e-20 72.5 0.6 4.8e-20 72.3 0.6 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|88602666|ref|YP_502844.1| - 4.2e-05 24.3 0.0 0.0002 22.1 0.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|88602666|ref|YP_502844.1| - 0.0037 17.8 1.7 0.012 16.2 1.7 1.7 1 1 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|88602667|ref|YP_502845.1| - 2.4e-05 24.1 0.5 4.1e-05 23.4 0.5 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2154 PF09922.9 gi|88602667|ref|YP_502845.1| - 0.058 13.3 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF Rapsyn_N PF10579.9 gi|88602668|ref|YP_502846.1| - 0.099 12.7 0.1 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 Rapsyn N-terminal myristoylation and linker region DUF4889 PF16230.5 gi|88602669|ref|YP_502847.1| - 0.03 14.5 0.3 0.092 13.0 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4889) AAA_14 PF13173.6 gi|88602670|ref|YP_502848.1| - 3.4e-26 91.8 0.0 9.3e-24 83.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF4143 PF13635.6 gi|88602670|ref|YP_502848.1| - 1e-15 57.9 0.0 1.9e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_7 PF12775.7 gi|88602670|ref|YP_502848.1| - 0.056 13.0 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 gi|88602670|ref|YP_502848.1| - 0.12 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein OmdA PF13376.6 gi|88602674|ref|YP_502852.1| - 0.091 12.8 0.0 0.45 10.6 0.0 1.9 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated AAA_16 PF13191.6 gi|88602675|ref|YP_502853.1| - 0.086 13.2 0.0 0.25 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|88602675|ref|YP_502853.1| - 0.1 12.4 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cytochrome_C7 PF14522.6 gi|88602675|ref|YP_502853.1| - 0.11 12.5 0.5 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|88602675|ref|YP_502853.1| - 0.11 13.0 0.1 0.11 13.0 0.1 3.1 2 1 0 2 2 2 0 Cytochrome c3 AAA_22 PF13401.6 gi|88602675|ref|YP_502853.1| - 0.11 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Transposase_31 PF04754.12 gi|88602677|ref|YP_502855.1| - 2.1e-30 105.9 0.0 2.6e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 Putative transposase, YhgA-like HlyD_D4 PF16572.5 gi|88602677|ref|YP_502855.1| - 0.0043 16.9 0.8 0.66 9.9 0.1 2.5 1 1 1 2 2 2 2 Long alpha hairpin domain of cation efflux system protein, CusB Sigma70_r4 PF04545.16 gi|88602677|ref|YP_502855.1| - 0.0053 16.3 0.5 0.027 14.0 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|88602677|ref|YP_502855.1| - 0.024 14.3 0.1 0.043 13.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|88602677|ref|YP_502855.1| - 0.037 13.8 0.1 4.9 7.1 0.0 2.4 1 1 1 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 gi|88602677|ref|YP_502855.1| - 0.048 13.8 0.3 2.9 8.1 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|88602677|ref|YP_502855.1| - 0.058 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Transposase_31 PF04754.12 gi|88602678|ref|YP_502856.1| - 2.5e-30 105.6 0.0 3.1e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposase, YhgA-like HlyD_D4 PF16572.5 gi|88602678|ref|YP_502856.1| - 0.0047 16.8 1.0 0.63 9.9 0.2 2.5 1 1 1 2 2 2 2 Long alpha hairpin domain of cation efflux system protein, CusB Sigma70_r4 PF04545.16 gi|88602678|ref|YP_502856.1| - 0.0054 16.2 0.5 0.028 14.0 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|88602678|ref|YP_502856.1| - 0.024 14.3 0.1 0.044 13.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|88602678|ref|YP_502856.1| - 0.058 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|88602678|ref|YP_502856.1| - 0.071 12.9 0.2 5 7.1 0.0 2.4 1 1 1 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 gi|88602678|ref|YP_502856.1| - 0.071 13.2 0.2 3.1 8.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Transposase_31 PF04754.12 gi|88602679|ref|YP_502857.1| - 2.5e-30 105.6 0.0 3.1e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposase, YhgA-like HlyD_D4 PF16572.5 gi|88602679|ref|YP_502857.1| - 0.0047 16.8 0.8 0.73 9.7 0.1 2.5 1 1 1 2 2 2 2 Long alpha hairpin domain of cation efflux system protein, CusB Sigma70_r4 PF04545.16 gi|88602679|ref|YP_502857.1| - 0.0057 16.1 0.5 0.029 13.9 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Yae1_N PF09811.9 gi|88602679|ref|YP_502857.1| - 0.0085 15.8 0.5 0.014 15.1 0.5 1.3 1 0 0 1 1 1 1 Essential protein Yae1, N terminal Sigma70_r4_2 PF08281.12 gi|88602679|ref|YP_502857.1| - 0.025 14.2 0.1 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|88602679|ref|YP_502857.1| - 0.051 13.7 0.2 3.3 7.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|88602679|ref|YP_502857.1| - 0.06 13.1 0.1 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|88602679|ref|YP_502857.1| - 0.083 12.7 0.1 5.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain PDDEXK_2 PF12784.7 gi|88602679|ref|YP_502857.1| - 0.11 12.0 0.0 0.98 8.9 0.0 2.0 2 0 0 2 2 2 0 PD-(D/E)XK nuclease family transposase AAA_14 PF13173.6 gi|88602680|ref|YP_502858.1| - 2.1e-36 124.9 0.0 2.6e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|88602680|ref|YP_502858.1| - 1.1e-06 28.7 0.1 0.00012 22.1 0.0 2.3 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|88602680|ref|YP_502858.1| - 2.3e-05 24.9 0.0 0.0011 19.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|88602680|ref|YP_502858.1| - 0.0013 18.3 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|88602680|ref|YP_502858.1| - 0.0067 16.4 0.0 0.011 15.6 0.0 1.4 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|88602680|ref|YP_502858.1| - 0.0095 16.2 0.0 0.13 12.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|88602680|ref|YP_502858.1| - 0.012 16.1 0.0 0.019 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|88602680|ref|YP_502858.1| - 0.018 14.8 0.0 0.074 12.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|88602680|ref|YP_502858.1| - 0.024 13.8 0.6 0.57 9.3 0.2 2.1 1 1 0 2 2 2 0 G-protein alpha subunit NB-ARC PF00931.22 gi|88602680|ref|YP_502858.1| - 0.025 13.8 0.0 0.63 9.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|88602680|ref|YP_502858.1| - 0.099 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|88602680|ref|YP_502858.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|88602680|ref|YP_502858.1| - 0.11 12.8 0.0 20 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain NAD_binding_1 PF00175.21 gi|88602680|ref|YP_502858.1| - 0.16 12.7 0.0 0.25 12.0 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain DUF86 PF01934.17 gi|88602681|ref|YP_502859.1| - 1.4e-21 76.6 0.0 1.9e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|88602682|ref|YP_502860.1| - 3.4e-12 46.3 0.1 4.9e-12 45.8 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88602682|ref|YP_502860.1| - 0.00043 20.5 0.1 0.00049 20.3 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88602683|ref|YP_502861.1| - 0.00061 19.8 0.3 0.0011 19.1 0.3 1.6 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88602683|ref|YP_502861.1| - 0.0028 17.9 0.1 0.0035 17.6 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain MCPsignal PF00015.21 gi|88602684|ref|YP_502862.1| - 6.7e-41 140.0 59.6 8.7e-41 139.6 25.4 6.6 2 2 2 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.7 gi|88602684|ref|YP_502862.1| - 2.6e-18 66.2 0.1 1.1e-07 32.0 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|88602684|ref|YP_502862.1| - 1.7e-17 63.6 0.0 2.4e-05 24.5 0.0 4.2 4 0 0 4 4 3 3 PAS fold PAS PF00989.25 gi|88602684|ref|YP_502862.1| - 4.4e-17 62.1 0.0 1.9e-05 24.6 0.0 3.8 3 0 0 3 3 3 3 PAS fold HAMP PF00672.25 gi|88602684|ref|YP_502862.1| - 5.1e-08 33.2 12.1 0.29 11.5 0.0 8.7 8 3 3 11 11 9 1 HAMP domain PAS_8 PF13188.7 gi|88602684|ref|YP_502862.1| - 1.1e-06 28.5 0.0 2.6 8.1 0.0 4.3 4 0 0 4 4 4 3 PAS domain DUF948 PF06103.11 gi|88602684|ref|YP_502862.1| - 1e-05 25.7 36.3 0.049 13.9 1.3 9.0 6 3 2 8 8 8 4 Bacterial protein of unknown function (DUF948) Vps5 PF09325.10 gi|88602684|ref|YP_502862.1| - 0.024 14.2 9.7 0.7 9.4 0.0 4.3 3 1 1 4 4 4 0 Vps5 C terminal like RPW8 PF05659.11 gi|88602684|ref|YP_502862.1| - 0.042 13.5 3.7 9.1 6.0 0.1 4.4 5 0 0 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Ferritin PF00210.24 gi|88602684|ref|YP_502862.1| - 0.08 12.9 0.3 0.37 10.7 0.3 2.2 1 0 0 1 1 1 0 Ferritin-like domain Syntaxin_2 PF14523.6 gi|88602684|ref|YP_502862.1| - 0.088 13.2 12.5 9 6.7 0.5 6.6 4 2 3 7 7 7 0 Syntaxin-like protein Sigma70_ner PF04546.13 gi|88602684|ref|YP_502862.1| - 0.73 9.7 13.7 0.74 9.7 1.2 2.8 2 0 0 2 2 2 0 Sigma-70, non-essential region DUF1664 PF07889.12 gi|88602684|ref|YP_502862.1| - 1.1 9.2 25.8 0.43 10.6 0.4 6.6 5 3 2 7 7 7 0 Protein of unknown function (DUF1664) Mce4_CUP1 PF11887.8 gi|88602684|ref|YP_502862.1| - 1.3 8.4 11.1 1 8.8 0.9 3.9 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative AIP3 PF03915.13 gi|88602684|ref|YP_502862.1| - 2 7.4 13.8 2.9 6.9 2.5 3.0 1 1 1 2 2 2 0 Actin interacting protein 3 CREPT PF16566.5 gi|88602684|ref|YP_502862.1| - 2 8.6 6.6 10 6.3 0.3 3.5 3 0 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour DUF1128 PF06569.11 gi|88602684|ref|YP_502862.1| - 2.8 8.0 6.5 9.3 6.3 0.1 3.5 4 0 0 4 4 3 0 Protein of unknown function (DUF1128) DUF4200 PF13863.6 gi|88602684|ref|YP_502862.1| - 3.6 8.0 8.7 11 6.5 1.3 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) FadA PF09403.10 gi|88602684|ref|YP_502862.1| - 3.9 8.0 9.3 37 4.9 0.4 5.1 6 0 0 6 6 6 0 Adhesion protein FadA Sec34 PF04136.15 gi|88602684|ref|YP_502862.1| - 7.8 6.4 8.6 64 3.4 0.0 4.9 3 2 3 6 6 6 0 Sec34-like family BLOC1_2 PF10046.9 gi|88602684|ref|YP_502862.1| - 8.2 6.8 16.3 4 7.8 0.4 6.0 4 2 1 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_14 PF13173.6 gi|88602685|ref|YP_502863.1| - 1.5e-32 112.4 0.3 3.1e-32 111.3 0.3 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88602685|ref|YP_502863.1| - 9.5e-14 51.6 1.6 5.5e-13 49.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|88602685|ref|YP_502863.1| - 0.015 15.2 0.1 0.39 10.6 0.0 2.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RRM_1 PF00076.22 gi|88602685|ref|YP_502863.1| - 0.048 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AAA_18 PF13238.6 gi|88602685|ref|YP_502863.1| - 0.053 14.1 0.0 0.15 12.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain Fer4_5 PF12801.7 gi|88602686|ref|YP_502864.1| - 5.1e-14 52.0 11.4 9.4e-12 44.7 0.8 5.1 7 0 0 7 7 7 2 4Fe-4S binding domain Fer4 PF00037.27 gi|88602686|ref|YP_502864.1| - 3e-08 33.2 29.6 0.00014 21.6 3.7 4.3 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88602686|ref|YP_502864.1| - 3.5e-08 33.5 14.0 0.00025 21.1 1.2 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88602686|ref|YP_502864.1| - 3.3e-07 30.8 17.9 0.0076 16.8 4.8 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602686|ref|YP_502864.1| - 3.8e-07 30.1 19.1 0.0043 17.2 1.5 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602686|ref|YP_502864.1| - 1.5e-06 28.2 19.6 0.0023 18.0 2.0 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602686|ref|YP_502864.1| - 2.1e-05 24.4 22.2 0.0015 18.5 3.4 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602686|ref|YP_502864.1| - 9.6e-05 23.2 21.4 0.14 13.1 3.0 3.9 3 1 2 5 5 5 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|88602686|ref|YP_502864.1| - 0.00015 22.4 29.6 0.027 15.4 4.9 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88602686|ref|YP_502864.1| - 0.00029 21.3 18.4 0.13 12.8 4.3 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602686|ref|YP_502864.1| - 0.00067 19.8 17.7 0.0068 16.6 10.3 3.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88602686|ref|YP_502864.1| - 0.0013 19.1 25.9 0.0059 17.0 4.7 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88602686|ref|YP_502864.1| - 0.0018 18.7 20.6 0.06 13.8 2.9 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602686|ref|YP_502864.1| - 0.02 15.0 27.2 0.052 13.7 4.6 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain CitMHS PF03600.16 gi|88602686|ref|YP_502864.1| - 0.84 8.8 9.2 1.1 8.3 9.2 1.3 1 0 0 1 1 1 0 Citrate transporter Fer4_22 PF17179.4 gi|88602686|ref|YP_502864.1| - 1 10.2 16.7 0.48 11.3 2.5 2.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain TNFR_c6 PF00020.18 gi|88602686|ref|YP_502864.1| - 2.1 8.8 12.1 1.1 9.7 2.4 2.8 3 0 0 3 3 3 0 TNFR/NGFR cysteine-rich region Transposase_31 PF04754.12 gi|88602687|ref|YP_502865.1| - 1.6e-30 106.3 0.0 2e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Putative transposase, YhgA-like Yae1_N PF09811.9 gi|88602687|ref|YP_502865.1| - 0.00079 19.1 3.9 0.0016 18.1 3.9 1.5 1 0 0 1 1 1 1 Essential protein Yae1, N terminal HTH_28 PF13518.6 gi|88602687|ref|YP_502865.1| - 0.061 13.5 0.2 5.2 7.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|88602687|ref|YP_502865.1| - 0.18 11.3 0.0 0.38 10.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Cache_3-Cache_2 PF17201.4 gi|88602688|ref|YP_502866.1| - 3.9e-78 262.7 2.1 3.9e-78 262.7 2.1 3.1 3 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain MCPsignal PF00015.21 gi|88602688|ref|YP_502866.1| - 1.2e-45 155.4 58.2 5.6e-43 146.7 28.7 4.1 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|88602688|ref|YP_502866.1| - 6e-34 116.7 4.9 6.4e-34 116.6 2.0 2.6 2 0 0 2 2 2 1 Single cache domain 3 dCache_1 PF02743.18 gi|88602688|ref|YP_502866.1| - 9.8e-15 55.0 3.2 9.8e-15 55.0 3.2 3.3 3 1 1 4 4 3 1 Cache domain dCache_2 PF08269.11 gi|88602688|ref|YP_502866.1| - 2.9e-12 46.4 0.1 2.9e-12 46.4 0.1 2.7 3 0 0 3 3 3 1 Cache domain sCache_2 PF17200.4 gi|88602688|ref|YP_502866.1| - 1.1e-09 38.3 0.1 1.1e-09 38.3 0.1 3.1 3 1 0 3 3 2 1 Single Cache domain 2 HAMP PF00672.25 gi|88602688|ref|YP_502866.1| - 3e-09 37.1 4.0 8.7e-07 29.2 0.0 5.6 6 1 1 7 7 6 1 HAMP domain sCache_3_2 PF17203.4 gi|88602688|ref|YP_502866.1| - 4.9e-09 36.4 0.4 4.9e-09 36.4 0.4 4.0 3 2 1 4 4 4 1 Single cache domain 3 DUF1664 PF07889.12 gi|88602688|ref|YP_502866.1| - 5.6e-07 29.6 27.1 0.012 15.6 0.7 4.6 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|88602688|ref|YP_502866.1| - 7.6e-05 22.9 37.2 0.039 14.2 1.2 6.3 4 2 2 6 6 5 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|88602688|ref|YP_502866.1| - 0.021 15.1 21.2 1.3 9.4 0.3 5.3 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.11 gi|88602688|ref|YP_502866.1| - 0.037 14.3 11.3 0.064 13.5 0.9 2.6 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|88602688|ref|YP_502866.1| - 0.046 12.4 23.6 0.081 11.6 14.6 2.2 1 1 1 2 2 2 0 AAA domain HAMP_N3 PF18575.1 gi|88602688|ref|YP_502866.1| - 0.076 12.6 0.4 0.69 9.5 0.0 3.0 3 0 0 3 3 2 0 HAMP N-terminal domain 3 Dicistro_VP4 PF11492.8 gi|88602688|ref|YP_502866.1| - 0.19 11.7 2.3 15 5.6 0.2 3.1 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 Sec34 PF04136.15 gi|88602688|ref|YP_502866.1| - 0.2 11.5 11.0 8.7 6.2 0.0 4.0 2 2 0 2 2 2 0 Sec34-like family Mce4_CUP1 PF11887.8 gi|88602688|ref|YP_502866.1| - 0.22 11.0 10.5 0.19 11.1 2.1 2.9 2 2 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative PIN_8 PF18476.1 gi|88602688|ref|YP_502866.1| - 0.27 11.1 8.0 0.79 9.5 2.2 2.8 2 1 0 2 2 2 0 PIN like domain Cauli_AT PF03233.13 gi|88602688|ref|YP_502866.1| - 0.45 10.4 5.3 3.9 7.4 0.1 3.0 2 1 0 2 2 2 0 Aphid transmission protein DUF3450 PF11932.8 gi|88602688|ref|YP_502866.1| - 0.46 9.7 24.9 0.046 13.0 5.2 3.6 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|88602688|ref|YP_502866.1| - 0.52 9.1 20.5 0.18 10.6 3.3 2.8 2 1 1 3 3 3 0 Spc7 kinetochore protein HMMR_N PF15905.5 gi|88602688|ref|YP_502866.1| - 0.69 9.3 13.4 3.6 7.0 6.1 2.4 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Nmad5 PF18757.1 gi|88602688|ref|YP_502866.1| - 0.71 10.0 11.1 0.18 12.0 4.1 2.6 2 1 1 3 3 3 0 Nucleotide modification associated domain 5 Noelin-1 PF12308.8 gi|88602688|ref|YP_502866.1| - 1.5 8.8 8.3 9.6 6.3 0.1 4.3 3 1 1 4 4 4 0 Neurogenesis glycoprotein Abi_C PF14355.6 gi|88602688|ref|YP_502866.1| - 1.9 8.6 7.8 44 4.3 0.1 5.2 4 2 1 5 5 5 0 Abortive infection C-terminus DUF1741 PF08427.10 gi|88602688|ref|YP_502866.1| - 2.8 7.5 7.0 0.76 9.4 3.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1741) Seryl_tRNA_N PF02403.22 gi|88602688|ref|YP_502866.1| - 5.3 7.3 17.2 2.8 8.2 1.0 4.3 2 2 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain SKA1 PF07160.12 gi|88602688|ref|YP_502866.1| - 6.6 6.5 14.6 1.6 8.6 0.9 2.9 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 PAS_3 PF08447.12 gi|88602689|ref|YP_502867.1| - 7.6e-36 122.3 7.8 2.2e-09 37.5 0.4 5.3 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|88602689|ref|YP_502867.1| - 1e-25 89.9 2.2 1.7e-05 24.8 0.0 6.8 6 0 0 6 6 6 5 PAS fold PAS_9 PF13426.7 gi|88602689|ref|YP_502867.1| - 2.7e-18 66.2 3.8 5.1e-05 23.5 0.1 6.4 6 0 0 6 6 6 3 PAS domain PAS_4 PF08448.10 gi|88602689|ref|YP_502867.1| - 1e-13 51.4 0.3 0.058 13.6 0.0 6.7 6 1 0 6 6 6 3 PAS fold GAF PF01590.26 gi|88602689|ref|YP_502867.1| - 3.5e-08 34.2 0.0 2e-07 31.7 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|88602689|ref|YP_502867.1| - 1.3e-06 28.7 0.0 1e-05 25.8 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|88602689|ref|YP_502867.1| - 1.5e-06 28.1 0.0 0.11 12.5 0.0 4.4 5 0 0 5 5 5 2 PAS domain dCache_1 PF02743.18 gi|88602689|ref|YP_502867.1| - 0.00021 21.2 0.4 0.22 11.2 0.0 3.8 4 0 0 4 4 4 1 Cache domain Rac1 PF09632.10 gi|88602689|ref|YP_502867.1| - 0.0091 15.2 3.6 3.7 6.6 0.0 3.2 3 0 0 3 3 3 2 Rac1-binding domain HTH_5 PF01022.20 gi|88602689|ref|YP_502867.1| - 0.013 15.3 0.2 0.07 13.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HATPase_c PF02518.26 gi|88602689|ref|YP_502867.1| - 0.023 15.2 0.0 0.095 13.2 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_IclR PF09339.10 gi|88602689|ref|YP_502867.1| - 0.033 14.0 1.5 0.074 12.9 0.2 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain SpoVT_C PF15714.5 gi|88602689|ref|YP_502867.1| - 0.046 13.8 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor HTH_29 PF13551.6 gi|88602689|ref|YP_502867.1| - 0.051 13.6 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|88602689|ref|YP_502867.1| - 0.058 13.5 0.1 0.19 11.8 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|88602689|ref|YP_502867.1| - 0.1 12.6 0.1 0.39 10.7 0.1 2.0 1 0 0 1 1 1 0 HTH domain rve_2 PF13333.6 gi|88602689|ref|YP_502867.1| - 0.11 12.7 0.1 0.31 11.2 0.1 1.7 1 0 0 1 1 1 0 Integrase core domain PAS_3 PF08447.12 gi|88602690|ref|YP_502868.1| - 3.6e-11 43.2 0.1 1.8e-10 41.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|88602690|ref|YP_502868.1| - 2.3e-09 37.7 0.0 8.6e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|88602690|ref|YP_502868.1| - 2.1e-05 24.5 0.3 5.1e-05 23.2 0.1 1.7 2 0 0 2 2 2 1 Cache domain HATPase_c_2 PF13581.6 gi|88602690|ref|YP_502868.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|88602690|ref|YP_502868.1| - 0.038 14.3 0.0 0.22 11.8 0.0 2.2 2 0 0 2 2 2 0 PAS domain GWT1 PF06423.12 gi|88602690|ref|YP_502868.1| - 0.072 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 GWT1 PAS PF00989.25 gi|88602690|ref|YP_502868.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 PAS fold PAS_4 PF08448.10 gi|88602691|ref|YP_502869.1| - 1.5e-69 231.2 5.5 6.9e-10 39.2 0.0 10.1 9 1 0 9 9 9 7 PAS fold PAS PF00989.25 gi|88602691|ref|YP_502869.1| - 6e-57 190.5 5.2 2.6e-10 40.3 0.0 9.4 9 0 0 9 9 9 7 PAS fold PAS_9 PF13426.7 gi|88602691|ref|YP_502869.1| - 2.7e-56 188.3 3.7 8.7e-09 35.6 0.0 10.1 10 0 0 10 10 9 9 PAS domain PocR PF10114.9 gi|88602691|ref|YP_502869.1| - 5e-47 159.7 0.0 5e-47 159.7 0.0 3.0 3 0 0 3 3 3 1 Sensory domain found in PocR PAS_8 PF13188.7 gi|88602691|ref|YP_502869.1| - 1.1e-38 130.6 0.4 2.6e-09 36.9 0.0 8.1 8 0 0 8 8 7 6 PAS domain PAS_3 PF08447.12 gi|88602691|ref|YP_502869.1| - 2.1e-37 127.3 0.1 2.3e-07 31.0 0.0 9.0 9 0 0 9 9 9 5 PAS fold Response_reg PF00072.24 gi|88602691|ref|YP_502869.1| - 2.2e-22 79.3 0.1 9.7e-22 77.3 0.0 2.3 2 0 0 2 2 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|88602691|ref|YP_502869.1| - 1.5e-21 77.1 0.0 2.9e-18 66.5 0.0 3.7 3 0 0 3 3 3 1 GAF domain HATPase_c PF02518.26 gi|88602691|ref|YP_502869.1| - 9.1e-09 35.8 0.2 3.3e-08 34.0 0.1 2.0 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|88602691|ref|YP_502869.1| - 3e-08 34.4 0.0 2.1e-05 25.2 0.0 2.8 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|88602691|ref|YP_502869.1| - 1.7e-05 24.9 4.6 0.68 10.1 0.0 6.0 7 0 0 7 7 5 2 PAS fold HisKA PF00512.25 gi|88602691|ref|YP_502869.1| - 0.0049 16.9 16.4 0.0087 16.1 0.0 5.3 6 0 0 6 6 5 2 His Kinase A (phospho-acceptor) domain SHE3 PF17078.5 gi|88602691|ref|YP_502869.1| - 0.012 15.4 0.4 0.012 15.4 0.4 3.4 3 0 0 3 3 3 0 SWI5-dependent HO expression protein 3 PAS_6 PF08348.11 gi|88602691|ref|YP_502869.1| - 0.044 13.6 0.0 0.74 9.7 0.0 2.6 2 0 0 2 2 2 0 YheO-like PAS domain LMBR1 PF04791.16 gi|88602691|ref|YP_502869.1| - 0.071 12.0 1.6 0.47 9.3 0.0 2.4 2 0 0 2 2 2 0 LMBR1-like membrane protein Spc7 PF08317.11 gi|88602691|ref|YP_502869.1| - 0.92 8.3 10.4 3.9 6.3 2.3 2.5 2 0 0 2 2 2 0 Spc7 kinetochore protein HAUS-augmin3 PF14932.6 gi|88602691|ref|YP_502869.1| - 2 8.0 10.6 4.4 6.8 3.4 2.5 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Dor1 PF04124.12 gi|88602691|ref|YP_502869.1| - 2 7.0 9.3 0.5 9.0 1.5 2.4 2 0 0 2 2 2 0 Dor1-like family Spc24 PF08286.11 gi|88602691|ref|YP_502869.1| - 4.1 7.7 13.7 3.3 8.0 2.7 3.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Xan_ur_permease PF00860.20 gi|88602692|ref|YP_502870.1| - 7.3e-78 262.0 44.4 9.6e-78 261.6 44.4 1.2 1 0 0 1 1 1 1 Permease family PAS PF00989.25 gi|88602693|ref|YP_502871.1| - 2e-37 127.6 0.8 1.5e-12 47.5 0.0 6.1 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.10 gi|88602693|ref|YP_502871.1| - 4.9e-35 120.1 1.7 6.6e-11 42.4 0.0 5.4 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|88602693|ref|YP_502871.1| - 1.7e-34 118.2 0.8 7.2e-12 45.5 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_8 PF13188.7 gi|88602693|ref|YP_502871.1| - 2.4e-31 107.2 0.0 1.2e-07 31.6 0.0 5.6 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|88602693|ref|YP_502871.1| - 8e-29 99.8 1.0 1.5e-13 50.8 0.3 4.8 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|88602693|ref|YP_502871.1| - 1.9e-12 47.7 0.3 2e-11 44.4 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|88602693|ref|YP_502871.1| - 0.00054 19.8 0.0 0.0021 17.9 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HisKA PF00512.25 gi|88602693|ref|YP_502871.1| - 0.012 15.7 0.1 0.012 15.7 0.1 2.6 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|88602693|ref|YP_502871.1| - 0.049 14.2 0.1 3.2 8.4 0.0 3.1 3 0 0 3 3 3 0 PAS domain DUF2456 PF10445.9 gi|88602694|ref|YP_502872.1| - 0.025 14.6 0.9 0.13 12.4 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2456) PAS_3 PF08447.12 gi|88602695|ref|YP_502873.1| - 9.9e-40 134.7 0.3 3.7e-17 62.4 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|88602695|ref|YP_502873.1| - 7.4e-28 96.9 0.3 7.7e-13 48.6 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|88602695|ref|YP_502873.1| - 2.4e-23 82.3 0.0 3.3e-09 36.7 0.0 4.0 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|88602695|ref|YP_502873.1| - 6.1e-23 81.1 0.0 4.5e-22 78.3 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88602695|ref|YP_502873.1| - 7.2e-12 45.5 0.1 0.00018 21.7 0.0 4.1 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|88602695|ref|YP_502873.1| - 3.9e-10 40.2 0.1 1.4e-09 38.4 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88602695|ref|YP_502873.1| - 1.4e-08 34.6 0.0 0.007 16.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain DUF573 PF04504.14 gi|88602695|ref|YP_502873.1| - 0.00027 21.5 1.0 0.009 16.7 0.2 2.7 2 1 0 2 2 2 1 Protein of unknown function, DUF573 PAS_11 PF14598.6 gi|88602695|ref|YP_502873.1| - 0.0059 16.7 0.0 0.18 12.0 0.0 3.1 3 1 0 3 3 3 1 PAS domain GhoS PF11080.8 gi|88602695|ref|YP_502873.1| - 0.017 15.1 0.1 0.091 12.7 0.0 2.2 2 0 0 2 2 2 0 Endoribonuclease GhoS Lant_dehydr_C PF14028.6 gi|88602695|ref|YP_502873.1| - 0.021 14.4 0.1 0.037 13.6 0.1 1.3 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Stevor PF17410.2 gi|88602695|ref|YP_502873.1| - 0.036 13.6 0.6 0.065 12.8 0.6 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF3552 PF12072.8 gi|88602695|ref|YP_502873.1| - 0.043 13.2 4.1 0.078 12.4 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) HisKA_4TM PF16926.5 gi|88602695|ref|YP_502873.1| - 0.1 12.2 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|88602695|ref|YP_502873.1| - 0.11 12.2 0.3 0.3 10.8 0.3 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain UPF0449 PF15136.6 gi|88602695|ref|YP_502873.1| - 0.2 12.2 2.1 0.46 11.0 2.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 GAS PF13851.6 gi|88602695|ref|YP_502873.1| - 0.43 9.9 9.1 0.061 12.7 4.6 1.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Ax_dynein_light PF10211.9 gi|88602695|ref|YP_502873.1| - 0.63 10.0 5.2 1.2 9.0 5.2 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain PAS_9 PF13426.7 gi|88602696|ref|YP_502874.1| - 1.6e-55 185.8 0.6 2.4e-12 47.0 0.0 7.2 7 0 0 7 7 7 6 PAS domain PAS_4 PF08448.10 gi|88602696|ref|YP_502874.1| - 9.4e-48 161.0 0.1 1.3e-10 41.5 0.0 7.6 7 1 0 7 7 7 5 PAS fold PAS PF00989.25 gi|88602696|ref|YP_502874.1| - 2e-34 117.9 0.1 1.5e-07 31.4 0.0 6.5 6 0 0 6 6 6 4 PAS fold PAS_3 PF08447.12 gi|88602696|ref|YP_502874.1| - 4.2e-31 107.1 0.0 5.7e-11 42.6 0.0 6.5 8 0 0 8 8 8 4 PAS fold PAS_8 PF13188.7 gi|88602696|ref|YP_502874.1| - 3.4e-29 100.3 0.1 1.4e-07 31.4 0.0 6.6 7 0 0 7 7 7 5 PAS domain Response_reg PF00072.24 gi|88602696|ref|YP_502874.1| - 1.2e-21 77.0 0.0 3.2e-21 75.6 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602696|ref|YP_502874.1| - 1.2e-13 51.5 1.0 1.7e-11 44.6 0.3 2.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|88602696|ref|YP_502874.1| - 4.8e-09 36.4 0.5 0.58 10.3 0.0 6.4 6 0 0 6 6 6 2 PAS fold PAS_10 PF13596.6 gi|88602696|ref|YP_502874.1| - 8.7e-05 23.1 0.0 5.4 7.6 0.0 4.9 5 0 0 5 5 4 2 PAS domain HATPase_c_3 PF13589.6 gi|88602696|ref|YP_502874.1| - 0.0054 16.6 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88602696|ref|YP_502874.1| - 0.0071 16.3 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain NPBW PF15180.6 gi|88602696|ref|YP_502874.1| - 0.16 11.8 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Neuropeptides B and W PAS_4 PF08448.10 gi|88602697|ref|YP_502875.1| - 6.7e-43 145.4 0.0 1e-13 51.5 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|88602697|ref|YP_502875.1| - 3.7e-42 142.9 0.1 4.8e-16 58.8 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|88602697|ref|YP_502875.1| - 7.4e-40 135.4 3.7 2.1e-15 56.8 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|88602697|ref|YP_502875.1| - 1e-27 95.6 0.0 2.6e-09 36.9 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|88602697|ref|YP_502875.1| - 1.7e-24 85.9 1.4 2.2e-17 63.1 0.8 3.5 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|88602697|ref|YP_502875.1| - 2.3e-14 53.5 0.6 8e-07 29.2 0.0 4.3 5 0 0 5 5 4 2 PAS fold dCache_1 PF02743.18 gi|88602697|ref|YP_502875.1| - 3.7e-08 33.5 1.2 8.7e-06 25.7 0.1 2.9 3 1 0 3 3 3 1 Cache domain PAS_12 PF18095.1 gi|88602697|ref|YP_502875.1| - 0.0057 16.3 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 UPF0242 C-terminal PAS-like domain PAS_10 PF13596.6 gi|88602697|ref|YP_502875.1| - 0.0076 16.8 0.1 10 6.8 0.0 3.6 3 0 0 3 3 3 0 PAS domain HTH_23 PF13384.6 gi|88602697|ref|YP_502875.1| - 0.013 15.2 0.1 0.042 13.6 0.1 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|88602697|ref|YP_502875.1| - 0.022 14.6 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF977 PF06163.11 gi|88602697|ref|YP_502875.1| - 0.07 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) TrmB PF01978.19 gi|88602697|ref|YP_502875.1| - 0.11 12.4 0.1 0.57 10.1 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 gi|88602697|ref|YP_502875.1| - 0.13 11.9 0.4 0.37 10.4 0.4 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_24 PF13412.6 gi|88602697|ref|YP_502875.1| - 0.2 11.2 2.7 0.64 9.6 2.7 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MotA_ExbB PF01618.16 gi|88602697|ref|YP_502875.1| - 0.25 11.1 3.7 9.3 6.0 0.0 3.4 4 0 0 4 4 4 0 MotA/TolQ/ExbB proton channel family ArsR PF09824.9 gi|88602697|ref|YP_502875.1| - 0.57 9.8 2.8 15 5.2 0.2 2.6 3 0 0 3 3 3 0 ArsR transcriptional regulator HTH_38 PF13936.6 gi|88602697|ref|YP_502875.1| - 1.7 8.4 5.0 0.3 10.9 0.7 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MCPsignal PF00015.21 gi|88602698|ref|YP_502876.1| - 1.9e-44 151.5 20.9 1.9e-44 151.5 20.9 5.0 3 1 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88602698|ref|YP_502876.1| - 7.1e-41 139.7 9.9 7.1e-41 139.7 9.9 4.9 4 2 0 6 6 5 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88602698|ref|YP_502876.1| - 3.4e-07 30.5 4.5 0.00015 22.0 0.0 4.8 5 0 0 5 5 5 1 HAMP domain TarH PF02203.15 gi|88602698|ref|YP_502876.1| - 0.0038 17.2 3.6 0.0038 17.2 3.6 4.9 4 2 1 5 5 5 1 Tar ligand binding domain homologue HAMP_N3 PF18575.1 gi|88602698|ref|YP_502876.1| - 0.019 14.5 0.2 3.5 7.3 0.0 3.9 4 0 0 4 4 4 0 HAMP N-terminal domain 3 DUF4064 PF13273.6 gi|88602698|ref|YP_502876.1| - 0.025 14.9 6.6 0.14 12.4 0.8 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF1664 PF07889.12 gi|88602698|ref|YP_502876.1| - 0.04 14.0 21.8 0.1 12.6 6.1 4.9 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Mce4_CUP1 PF11887.8 gi|88602698|ref|YP_502876.1| - 0.17 11.3 13.4 0.075 12.5 1.5 3.3 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative NPV_P10 PF05531.12 gi|88602698|ref|YP_502876.1| - 0.4 11.2 17.1 1.3 9.5 3.7 5.1 3 2 0 3 3 2 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.19 gi|88602698|ref|YP_502876.1| - 0.55 8.1 7.1 1.5 6.7 7.1 1.7 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family V-SNARE PF05008.15 gi|88602698|ref|YP_502876.1| - 1.2 9.5 9.7 0.37 11.2 1.5 3.4 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF1741 PF08427.10 gi|88602698|ref|YP_502876.1| - 1.5 8.5 9.8 1.7 8.3 1.6 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF1741) DUF4455 PF14643.6 gi|88602698|ref|YP_502876.1| - 1.5 7.4 12.9 0.24 10.0 3.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4455) CheZ PF04344.13 gi|88602698|ref|YP_502876.1| - 2.3 8.1 20.1 0.6 10.0 1.8 3.6 2 1 0 3 3 2 0 Chemotaxis phosphatase, CheZ SesA PF17107.5 gi|88602698|ref|YP_502876.1| - 2.5 8.3 10.6 3.5 7.8 2.6 3.9 2 1 1 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Laminin_II PF06009.12 gi|88602698|ref|YP_502876.1| - 2.6 8.1 28.9 2 8.4 4.0 5.2 1 1 4 5 5 5 0 Laminin Domain II Mating_N PF12731.7 gi|88602698|ref|YP_502876.1| - 2.7 8.1 13.9 0.78 9.9 0.4 5.4 4 2 0 5 5 5 0 Mating-type protein beta 1 YppG PF14179.6 gi|88602698|ref|YP_502876.1| - 3.1 8.6 4.4 39 5.0 0.7 2.5 2 0 0 2 2 2 0 YppG-like protein FlaC_arch PF05377.11 gi|88602698|ref|YP_502876.1| - 4.4 7.8 19.7 15 6.0 0.5 6.4 4 1 2 6 6 6 0 Flagella accessory protein C (FlaC) DASH_Duo1 PF08651.10 gi|88602698|ref|YP_502876.1| - 5.5 6.8 18.9 14 5.5 0.1 6.9 6 1 2 8 8 8 0 DASH complex subunit Duo1 BLOC1_2 PF10046.9 gi|88602698|ref|YP_502876.1| - 6.7 7.1 22.4 0.82 10.0 2.7 5.9 4 2 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad2 PF08654.10 gi|88602698|ref|YP_502876.1| - 7.5 7.0 19.8 0.096 13.1 3.3 4.6 2 2 1 4 4 4 0 DASH complex subunit Dad2 zf-C4H2 PF10146.9 gi|88602698|ref|YP_502876.1| - 9.2 6.5 21.0 0.052 13.8 2.1 3.6 4 1 0 4 4 4 0 Zinc finger-containing protein CheW PF01584.19 gi|88602699|ref|YP_502877.1| - 4.7e-26 91.1 0.1 6.2e-26 90.7 0.1 1.2 1 0 0 1 1 1 1 CheW-like domain DUF4462 PF14692.6 gi|88602699|ref|YP_502877.1| - 0.13 11.8 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4462) Cob_adeno_trans PF01923.18 gi|88602700|ref|YP_502878.1| - 0.03 14.5 3.9 0.038 14.1 0.2 2.1 1 1 0 2 2 2 0 Cobalamin adenosyltransferase DUF5446 PF17522.2 gi|88602700|ref|YP_502878.1| - 0.032 14.4 3.1 1.2 9.4 0.3 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5446) HTH_26 PF13443.6 gi|88602700|ref|YP_502878.1| - 0.04 14.4 2.5 0.12 12.9 0.7 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain GNT-I PF03071.15 gi|88602700|ref|YP_502878.1| - 2.2 6.9 6.7 0.26 10.0 1.9 1.7 1 1 1 2 2 2 0 GNT-I family CARDB PF07705.11 gi|88602701|ref|YP_502879.1| - 5.3e-10 39.5 0.0 0.0038 17.4 0.0 3.3 3 1 0 3 3 3 2 CARDB NPCBM_assoc PF10633.9 gi|88602701|ref|YP_502879.1| - 3.8e-06 27.1 0.0 0.026 14.8 0.0 3.7 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|88602701|ref|YP_502879.1| - 0.00022 21.5 0.4 0.35 11.2 0.0 3.5 3 1 0 3 3 3 1 Domain of unknown function DUF11 DUF4832 PF16116.5 gi|88602701|ref|YP_502879.1| - 0.00089 19.2 0.0 0.0035 17.2 0.0 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4832) N_BRCA1_IG PF16158.5 gi|88602701|ref|YP_502879.1| - 0.011 16.5 0.0 3.9 8.3 0.0 3.1 3 0 0 3 3 3 0 Ig-like domain from next to BRCA1 gene DUF5325 PF17259.2 gi|88602701|ref|YP_502879.1| - 0.07 13.0 1.3 0.082 12.8 0.1 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5325) FtsX PF02687.21 gi|88602702|ref|YP_502880.1| - 4.9e-09 36.5 5.2 4.9e-09 36.5 5.2 3.1 3 0 0 3 3 3 2 FtsX-like permease family Claudin_3 PF06653.11 gi|88602702|ref|YP_502880.1| - 1.5 8.7 11.2 0.089 12.7 5.4 1.8 2 0 0 2 2 2 0 Tight junction protein, Claudin-like Cytochrom_B_C PF00032.17 gi|88602702|ref|YP_502880.1| - 9.5 6.6 8.0 25 5.2 0.2 2.3 2 0 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD ABC_tran PF00005.27 gi|88602703|ref|YP_502881.1| - 3.3e-34 118.3 0.0 4.4e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88602703|ref|YP_502881.1| - 1e-09 38.7 0.7 0.00022 21.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88602703|ref|YP_502881.1| - 7.6e-06 25.5 0.0 0.024 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88602703|ref|YP_502881.1| - 0.00042 20.0 0.0 0.00076 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|88602703|ref|YP_502881.1| - 0.0024 17.5 0.0 0.091 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88602703|ref|YP_502881.1| - 0.0028 18.1 0.1 0.0062 16.9 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|88602703|ref|YP_502881.1| - 0.012 15.8 0.7 0.1 12.9 0.7 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|88602703|ref|YP_502881.1| - 0.014 15.6 0.1 0.32 11.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|88602703|ref|YP_502881.1| - 0.02 14.6 0.0 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|88602703|ref|YP_502881.1| - 0.024 15.2 0.4 0.061 13.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|88602703|ref|YP_502881.1| - 0.028 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|88602703|ref|YP_502881.1| - 0.039 14.4 0.0 0.069 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2167 PF09935.9 gi|88602703|ref|YP_502881.1| - 0.17 11.0 0.0 0.25 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) AAA_33 PF13671.6 gi|88602703|ref|YP_502881.1| - 0.21 11.8 0.4 0.39 10.9 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA-ATPase_like PF09820.9 gi|88602704|ref|YP_502882.1| - 7.7e-101 337.2 0.0 1.2e-100 336.6 0.0 1.3 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602704|ref|YP_502882.1| - 1.4e-26 92.4 0.0 2.3e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3943 PF13084.6 gi|88602704|ref|YP_502882.1| - 0.048 13.5 0.3 0.25 11.2 0.2 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF3943) DUF4014 PF13198.6 gi|88602704|ref|YP_502882.1| - 0.052 13.9 1.2 0.21 12.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) UXS1_N PF11803.8 gi|88602704|ref|YP_502882.1| - 0.16 12.4 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal AAA-ATPase_like PF09820.9 gi|88602705|ref|YP_502883.1| - 5.2e-81 272.1 1.6 9.9e-81 271.2 1.6 1.5 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88602705|ref|YP_502883.1| - 1.2e-22 79.7 0.0 2.5e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Mad3_BUB1_I PF08311.12 gi|88602705|ref|YP_502883.1| - 0.061 13.3 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 dCache_1 PF02743.18 gi|88602706|ref|YP_502884.1| - 0.00093 19.1 0.1 0.0016 18.3 0.1 1.3 1 0 0 1 1 1 1 Cache domain PP_kinase_C_1 PF17941.1 gi|88602707|ref|YP_502885.1| - 5e-76 253.9 0.2 1.1e-75 252.8 0.1 1.6 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|88602707|ref|YP_502885.1| - 3.9e-66 222.5 0.1 6.9e-66 221.7 0.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_C PF13090.6 gi|88602707|ref|YP_502885.1| - 1.3e-63 213.6 0.0 2.4e-63 212.7 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_N PF13089.6 gi|88602707|ref|YP_502885.1| - 9.5e-38 128.8 0.0 1.7e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|88602707|ref|YP_502885.1| - 5.9e-10 39.1 0.0 7.4e-07 29.1 0.1 3.0 2 1 0 2 2 2 2 PLD-like domain ATG16 PF08614.11 gi|88602708|ref|YP_502886.1| - 0.00013 22.3 0.5 0.00016 21.9 0.5 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HMMR_N PF15905.5 gi|88602708|ref|YP_502886.1| - 0.00044 19.8 0.7 0.00053 19.6 0.7 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Spc7 PF08317.11 gi|88602708|ref|YP_502886.1| - 0.0019 17.2 0.7 0.0022 17.0 0.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein RHH_1 PF01402.21 gi|88602708|ref|YP_502886.1| - 0.0035 17.2 0.2 0.011 15.7 0.2 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family XLF PF09302.11 gi|88602708|ref|YP_502886.1| - 0.01 16.0 1.1 0.017 15.3 0.8 1.6 1 1 1 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Seryl_tRNA_N PF02403.22 gi|88602708|ref|YP_502886.1| - 0.012 15.9 1.1 0.029 14.6 0.8 1.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|88602708|ref|YP_502886.1| - 0.012 14.9 0.2 0.017 14.5 0.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding JIP_LZII PF16471.5 gi|88602708|ref|YP_502886.1| - 0.013 15.6 2.0 16 5.8 0.0 3.3 2 1 1 3 3 3 0 JNK-interacting protein leucine zipper II CALCOCO1 PF07888.11 gi|88602708|ref|YP_502886.1| - 0.016 14.1 0.7 0.023 13.6 0.7 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like TMF_TATA_bd PF12325.8 gi|88602708|ref|YP_502886.1| - 0.021 15.1 1.1 0.031 14.5 1.1 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FH2 PF02181.23 gi|88602708|ref|YP_502886.1| - 0.021 13.9 0.3 0.026 13.7 0.3 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF1664 PF07889.12 gi|88602708|ref|YP_502886.1| - 0.035 14.2 1.4 0.1 12.6 1.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) MIS13 PF08202.11 gi|88602708|ref|YP_502886.1| - 0.04 13.2 0.2 0.054 12.8 0.2 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Med30 PF11315.8 gi|88602708|ref|YP_502886.1| - 0.052 13.8 1.5 3.6 7.8 0.0 2.1 1 1 1 2 2 2 0 Mediator complex subunit 30 Fez1 PF06818.15 gi|88602708|ref|YP_502886.1| - 0.061 13.8 0.2 0.084 13.3 0.2 1.2 1 0 0 1 1 1 0 Fez1 Baculo_PEP_C PF04513.12 gi|88602708|ref|YP_502886.1| - 0.074 13.1 0.9 0.23 11.5 0.8 1.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spore_III_AB PF09548.10 gi|88602708|ref|YP_502886.1| - 0.092 12.9 0.0 0.092 12.9 0.0 1.5 2 0 0 2 2 1 0 Stage III sporulation protein AB (spore_III_AB) PsbJ PF01788.17 gi|88602708|ref|YP_502886.1| - 0.099 12.5 0.2 0.16 11.9 0.2 1.2 1 0 0 1 1 1 0 PsbJ FAM76 PF16046.5 gi|88602708|ref|YP_502886.1| - 0.11 11.9 0.9 0.12 11.7 0.9 1.1 1 0 0 1 1 1 0 FAM76 protein DUF16 PF01519.16 gi|88602708|ref|YP_502886.1| - 0.31 11.5 1.9 1.1 9.8 1.5 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 PAS PF00989.25 gi|88602709|ref|YP_502887.1| - 1.7e-18 66.6 0.0 2.3e-07 30.8 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|88602709|ref|YP_502887.1| - 2.3e-13 49.8 0.0 6.8e-07 29.2 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_9 PF13426.7 gi|88602709|ref|YP_502887.1| - 2.8e-13 50.0 0.0 5.2e-06 26.6 0.0 3.8 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|88602709|ref|YP_502887.1| - 1.4e-11 44.5 0.1 0.0001 22.6 0.0 3.5 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|88602709|ref|YP_502887.1| - 2.3e-10 40.7 0.0 6.2e-08 32.9 0.0 3.7 3 1 0 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|88602709|ref|YP_502887.1| - 7.8e-06 26.4 0.0 1.9e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|88602709|ref|YP_502887.1| - 0.0016 18.8 0.2 0.0036 17.7 0.2 1.7 1 0 0 1 1 1 1 HAMP domain HisKA_4TM PF16926.5 gi|88602709|ref|YP_502887.1| - 0.0066 16.0 0.2 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_8 PF13188.7 gi|88602710|ref|YP_502888.1| - 1.4e-07 31.4 0.0 4e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|88602710|ref|YP_502888.1| - 1.8e-07 31.3 0.0 3.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88602710|ref|YP_502888.1| - 3.8e-06 26.9 0.0 6.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|88602710|ref|YP_502888.1| - 0.0013 18.9 0.0 0.0023 18.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|88602710|ref|YP_502888.1| - 0.0061 16.6 0.2 0.022 14.8 0.0 2.0 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|88602710|ref|YP_502888.1| - 0.012 15.8 0.0 0.029 14.6 0.0 1.7 1 1 0 1 1 1 0 PAS fold ABC_tran_CTD PF16326.5 gi|88602710|ref|YP_502888.1| - 0.1 12.8 1.4 1.7 8.9 0.0 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain HATPase_c PF02518.26 gi|88602711|ref|YP_502889.1| - 4e-23 82.1 0.1 7e-23 81.3 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88602711|ref|YP_502889.1| - 1e-08 35.0 0.1 1e-08 35.0 0.1 2.3 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|88602711|ref|YP_502889.1| - 0.00018 21.4 0.0 0.00046 20.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4064 PF13273.6 gi|88602711|ref|YP_502889.1| - 0.03 14.6 1.7 0.78 10.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) HATPase_c_2 PF13581.6 gi|88602711|ref|YP_502889.1| - 0.034 14.1 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain JIP_LZII PF16471.5 gi|88602711|ref|YP_502889.1| - 0.071 13.3 5.8 0.17 12.1 5.8 1.6 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II HATPase_c_5 PF14501.6 gi|88602711|ref|YP_502889.1| - 0.073 13.0 0.0 0.2 11.6 0.0 1.7 1 1 0 1 1 1 0 GHKL domain Sigma_reg_N PF13800.6 gi|88602711|ref|YP_502889.1| - 0.11 12.8 1.3 6.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF3671 PF12420.8 gi|88602711|ref|YP_502889.1| - 0.15 12.2 1.9 0.84 9.7 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function LysE PF01810.18 gi|88602712|ref|YP_502890.1| - 1.3e-28 99.8 16.0 1.5e-28 99.6 16.0 1.0 1 0 0 1 1 1 1 LysE type translocator PT-VENN PF04829.13 gi|88602712|ref|YP_502890.1| - 4.6 7.4 5.3 0.8 9.8 0.4 2.3 2 1 0 2 2 2 0 Pre-toxin domain with VENN motif RVT_3 PF13456.6 gi|88602713|ref|YP_502891.1| - 1.9e-19 69.7 0.0 2.3e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|88602713|ref|YP_502891.1| - 8e-15 55.3 0.0 9.2e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 RNase H FAP206 PF12018.8 gi|88602713|ref|YP_502891.1| - 0.034 13.7 0.1 0.043 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function CLP1_P PF16575.5 gi|88602713|ref|YP_502891.1| - 0.086 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Response_reg PF00072.24 gi|88602714|ref|YP_502892.1| - 6.5e-28 97.2 0.1 1.3e-27 96.2 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88602714|ref|YP_502892.1| - 5.6e-06 26.6 0.0 1.8e-05 24.9 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|88602714|ref|YP_502892.1| - 6.9e-06 26.0 0.0 5.7e-05 23.1 0.0 2.5 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88602714|ref|YP_502892.1| - 0.00081 19.6 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|88602714|ref|YP_502892.1| - 0.0086 16.1 0.0 0.084 12.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|88602714|ref|YP_502892.1| - 0.061 13.9 0.0 6.1 7.5 0.0 2.9 3 1 1 4 4 4 0 PAS domain Response_reg PF00072.24 gi|88602715|ref|YP_502893.1| - 6.5e-30 103.6 1.4 7.2e-30 103.4 1.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88602716|ref|YP_502894.1| - 1.6e-27 95.9 0.0 5.2e-16 58.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|88602716|ref|YP_502894.1| - 2.6e-19 69.5 0.0 6e-19 68.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88602716|ref|YP_502894.1| - 6.3e-17 61.6 0.0 4.9e-07 29.7 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88602716|ref|YP_502894.1| - 1.4e-14 54.2 0.0 3.9e-06 27.1 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|88602716|ref|YP_502894.1| - 3e-05 23.9 0.1 0.028 14.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|88602716|ref|YP_502894.1| - 0.00044 20.4 0.1 0.0081 16.3 0.0 2.8 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|88602716|ref|YP_502894.1| - 0.0094 16.2 0.0 1.5 9.2 0.0 2.8 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|88602716|ref|YP_502894.1| - 0.07 13.2 0.1 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain SRAP PF02586.14 gi|88602717|ref|YP_502895.1| - 8.9e-41 139.8 0.0 1.6e-40 139.0 0.0 1.4 1 1 0 1 1 1 1 SOS response associated peptidase (SRAP) HATPase_c PF02518.26 gi|88602718|ref|YP_502896.1| - 6.2e-24 84.7 0.6 2.1e-23 83.0 0.3 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88602718|ref|YP_502896.1| - 1.3e-18 67.1 0.1 5e-17 61.9 0.0 2.7 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88602718|ref|YP_502896.1| - 1.3e-11 44.6 0.0 3.5e-11 43.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88602718|ref|YP_502896.1| - 2.7e-09 37.2 0.0 1e-08 35.4 0.0 2.1 2 0 0 2 2 1 1 PAS fold HAMP PF00672.25 gi|88602718|ref|YP_502896.1| - 5.2e-09 36.4 0.0 1.7e-08 34.7 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.25 gi|88602718|ref|YP_502896.1| - 8.5e-09 35.3 0.9 8.5e-09 35.3 0.9 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|88602718|ref|YP_502896.1| - 1.2e-06 28.4 0.0 3.6e-06 26.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|88602718|ref|YP_502896.1| - 4.5e-06 26.5 0.0 1.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 gi|88602718|ref|YP_502896.1| - 0.00033 20.8 1.7 0.0027 17.8 0.1 3.2 3 1 0 3 3 3 1 PAS fold dCache_2 PF08269.11 gi|88602718|ref|YP_502896.1| - 0.00056 19.2 0.9 0.00056 19.2 0.9 1.9 2 0 0 2 2 2 1 Cache domain PI3K_P85_iSH2 PF16454.5 gi|88602718|ref|YP_502896.1| - 0.00094 18.8 5.4 0.11 12.1 0.5 2.7 2 0 0 2 2 2 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HATPase_c_2 PF13581.6 gi|88602718|ref|YP_502896.1| - 0.0015 18.5 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|88602718|ref|YP_502896.1| - 0.0067 16.7 0.0 0.018 15.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold sCache_like PF16736.5 gi|88602718|ref|YP_502896.1| - 0.019 15.1 0.3 1.3 9.1 0.1 2.7 2 0 0 2 2 2 0 Single Cache-like Baculo_PEP_C PF04513.12 gi|88602718|ref|YP_502896.1| - 0.035 14.2 2.7 1.6 8.7 0.5 2.5 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HMMR_N PF15905.5 gi|88602718|ref|YP_502896.1| - 0.35 10.3 6.8 1 8.7 0.9 2.2 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Ribonuc_2-5A PF06479.12 gi|88602718|ref|YP_502896.1| - 1.1 9.5 4.2 0.8 9.9 0.1 2.6 3 0 0 3 3 3 0 Ribonuclease 2-5A DUF16 PF01519.16 gi|88602718|ref|YP_502896.1| - 4.5 7.8 6.1 21 5.6 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function DUF16 Tup_N PF08581.10 gi|88602718|ref|YP_502896.1| - 5.6 7.3 11.7 12 6.3 0.7 2.8 2 0 0 2 2 2 0 Tup N-terminal DUF454 PF04304.13 gi|88602719|ref|YP_502897.1| - 1e-33 115.8 9.4 1.2e-33 115.5 9.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF454) ArAE_2_N PF10337.9 gi|88602719|ref|YP_502897.1| - 0.028 13.5 0.1 0.041 12.9 0.1 1.3 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal DUF4131 PF13567.6 gi|88602719|ref|YP_502897.1| - 0.27 10.9 5.9 0.21 11.3 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) S_4TM PF18159.1 gi|88602719|ref|YP_502897.1| - 3.3 6.9 5.7 1.8 7.8 0.7 2.0 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain Rubredoxin PF00301.20 gi|88602720|ref|YP_502898.1| - 5.5e-20 71.1 3.4 9.4e-20 70.4 3.1 1.5 2 0 0 2 2 2 1 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|88602720|ref|YP_502898.1| - 0.00048 19.6 0.4 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|88602720|ref|YP_502898.1| - 0.0022 17.7 0.2 1.6 8.5 0.1 2.1 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein ADK_lid PF05191.14 gi|88602720|ref|YP_502898.1| - 0.0035 17.3 2.2 0.11 12.5 0.0 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf_UBZ PF18439.1 gi|88602720|ref|YP_502898.1| - 0.0042 16.7 0.6 0.34 10.5 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF4379 PF14311.6 gi|88602720|ref|YP_502898.1| - 0.0051 17.1 0.1 0.16 12.4 0.0 2.1 2 0 0 2 2 2 1 Probable Zinc-ribbon domain PHD PF00628.29 gi|88602720|ref|YP_502898.1| - 0.0061 16.4 0.6 1.2 9.1 0.1 2.1 2 0 0 2 2 2 1 PHD-finger Zn_ribbon_SprT PF17283.2 gi|88602720|ref|YP_502898.1| - 0.0069 16.3 2.9 1.9 8.5 0.1 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|88602720|ref|YP_502898.1| - 0.0077 16.2 0.5 0.28 11.2 0.1 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|88602720|ref|YP_502898.1| - 0.0081 15.5 0.5 1.3 8.5 0.0 2.1 2 0 0 2 2 2 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain PhnA_Zn_Ribbon PF08274.12 gi|88602720|ref|YP_502898.1| - 0.011 15.6 1.6 2.9 7.9 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|88602720|ref|YP_502898.1| - 0.012 15.3 5.9 0.29 10.9 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF4120 PF13496.6 gi|88602720|ref|YP_502898.1| - 0.014 15.8 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4120) OrfB_Zn_ribbon PF07282.11 gi|88602720|ref|YP_502898.1| - 0.015 15.2 0.2 3.1 7.8 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-RanBP PF00641.18 gi|88602720|ref|YP_502898.1| - 0.025 13.9 6.7 0.92 8.9 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF4428 PF14471.6 gi|88602720|ref|YP_502898.1| - 0.031 14.2 0.6 0.64 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) RNA_POL_M_15KD PF02150.16 gi|88602720|ref|YP_502898.1| - 0.033 14.1 0.9 1.4 8.9 0.3 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Methyltransf_13 PF08421.11 gi|88602720|ref|YP_502898.1| - 0.034 14.4 0.0 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 Putative zinc binding domain PHD_2 PF13831.6 gi|88602720|ref|YP_502898.1| - 0.038 13.5 2.4 2.4 7.8 0.1 2.1 2 0 0 2 2 2 0 PHD-finger Zn-ribbon_8 PF09723.10 gi|88602720|ref|YP_502898.1| - 0.039 14.1 1.2 0.22 11.7 1.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain PHD_4 PF16866.5 gi|88602720|ref|YP_502898.1| - 0.057 13.5 1.0 0.59 10.3 0.1 2.0 2 0 0 2 2 2 0 PHD-finger zf-UBP PF02148.19 gi|88602720|ref|YP_502898.1| - 0.064 13.6 0.2 0.69 10.3 0.0 2.1 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein HalOD2 PF18547.1 gi|88602720|ref|YP_502898.1| - 0.11 12.5 4.3 0.38 10.7 0.4 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 UPF0547 PF10571.9 gi|88602720|ref|YP_502898.1| - 0.15 12.2 5.2 0.96 9.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.12 gi|88602720|ref|YP_502898.1| - 0.23 11.8 3.8 7.6 6.9 0.6 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|88602720|ref|YP_502898.1| - 0.26 10.8 4.2 7 6.2 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|88602720|ref|YP_502898.1| - 7.9 6.1 6.6 26 4.4 0.1 2.7 2 1 1 3 3 3 0 C2H2 type zinc-finger Zn_ribbon_2 PF12674.7 gi|88602721|ref|YP_502899.1| - 1.5e-26 92.9 3.9 1.6e-26 92.8 1.7 1.8 2 0 0 2 2 2 1 Putative zinc ribbon domain Auto_anti-p27 PF06677.12 gi|88602721|ref|YP_502899.1| - 0.0051 16.9 0.1 0.012 15.8 0.1 1.6 1 1 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MAGI_u5 PF16666.5 gi|88602721|ref|YP_502899.1| - 0.096 12.8 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Unstructured region on MAGI DUF4430 PF14478.6 gi|88602722|ref|YP_502900.1| - 3.2e-05 24.5 0.2 0.064 13.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4430) Y_phosphatase PF00102.27 gi|88602723|ref|YP_502901.1| - 7.1e-08 32.3 0.0 9.7e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase DSPc PF00782.20 gi|88602723|ref|YP_502901.1| - 3e-07 30.3 0.0 3.5e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase3 PF13350.6 gi|88602723|ref|YP_502901.1| - 8e-05 22.7 0.1 0.00014 22.0 0.1 1.5 1 1 0 1 1 1 1 Tyrosine phosphatase family CDKN3 PF05706.12 gi|88602723|ref|YP_502901.1| - 0.00047 19.9 0.0 0.00059 19.5 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|88602723|ref|YP_502901.1| - 0.0015 18.7 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate tRNA_anti-codon PF01336.25 gi|88602723|ref|YP_502901.1| - 0.098 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain TPR_2 PF07719.17 gi|88602724|ref|YP_502902.1| - 3.2e-106 339.1 59.9 2e-08 33.7 0.0 27.5 28 0 0 28 28 27 20 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602724|ref|YP_502902.1| - 3.6e-96 311.4 51.6 2.5e-08 33.4 0.0 24.6 26 0 0 26 26 26 17 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602724|ref|YP_502902.1| - 7.7e-87 285.7 56.4 1.5e-08 35.1 0.5 17.9 9 5 9 19 19 19 18 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602724|ref|YP_502902.1| - 7.5e-82 269.8 66.0 3.8e-09 36.9 0.4 17.4 10 3 7 19 19 19 17 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602724|ref|YP_502902.1| - 8.1e-78 255.9 58.6 3.8e-12 45.7 0.4 23.3 12 7 12 25 25 24 12 TPR repeat TPR_14 PF13428.6 gi|88602724|ref|YP_502902.1| - 1.7e-71 230.7 72.8 2.1e-06 28.1 0.1 26.4 3 3 26 29 29 29 19 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602724|ref|YP_502902.1| - 9.3e-71 228.2 45.2 7.4e-08 32.0 0.0 24.3 26 0 0 26 26 24 14 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602724|ref|YP_502902.1| - 9.4e-66 213.6 45.3 0.00017 21.7 0.1 25.9 27 0 0 27 27 25 12 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602724|ref|YP_502902.1| - 2.6e-55 184.6 38.3 2.4e-08 34.1 0.0 13.0 7 4 6 14 14 14 11 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88602724|ref|YP_502902.1| - 1.8e-49 165.7 51.3 1.2e-05 25.3 0.3 16.0 6 4 11 18 18 18 15 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602724|ref|YP_502902.1| - 1.9e-46 156.2 60.0 7.2e-05 23.0 0.1 17.9 11 5 6 18 18 17 12 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602724|ref|YP_502902.1| - 6.1e-24 83.0 49.7 0.019 15.6 0.0 20.4 23 0 0 23 23 19 5 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602724|ref|YP_502902.1| - 3.1e-22 79.1 53.0 4.7e-05 22.7 0.1 10.2 3 3 8 11 11 11 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602724|ref|YP_502902.1| - 6.4e-20 69.7 33.7 0.00021 21.1 0.0 17.7 20 1 1 21 21 16 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602724|ref|YP_502902.1| - 1.4e-19 69.9 23.9 0.0088 16.1 0.1 14.9 15 1 1 16 16 15 5 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 gi|88602724|ref|YP_502902.1| - 1.7e-14 53.9 36.3 0.00075 19.8 0.1 13.3 6 4 4 15 15 13 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602724|ref|YP_502902.1| - 2.6e-14 53.0 22.0 0.094 11.6 0.1 10.6 3 3 6 11 11 11 3 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|88602724|ref|YP_502902.1| - 1.5e-13 51.4 32.4 0.0014 19.1 0.3 10.6 6 3 2 11 11 11 3 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|88602724|ref|YP_502902.1| - 9.5e-11 41.7 13.2 0.024 14.6 0.0 8.6 6 3 3 9 9 8 2 Putative TPR-like repeat Alkyl_sulf_dimr PF14863.6 gi|88602724|ref|YP_502902.1| - 2.7e-07 31.1 18.5 0.015 15.7 0.0 9.3 7 3 2 9 9 9 1 Alkyl sulfatase dimerisation Coatomer_E PF04733.14 gi|88602724|ref|YP_502902.1| - 3.7e-06 26.6 14.3 2.2 7.6 0.1 8.3 6 2 1 8 8 8 1 Coatomer epsilon subunit TPR_21 PF09976.9 gi|88602724|ref|YP_502902.1| - 0.00017 21.3 43.8 0.46 10.2 0.2 9.5 4 2 3 9 9 9 3 Tetratricopeptide repeat-like domain ANAPC5 PF12862.7 gi|88602724|ref|YP_502902.1| - 0.00081 19.4 11.6 16 5.7 0.1 8.2 9 1 0 9 9 7 0 Anaphase-promoting complex subunit 5 HrpB1_HrpK PF09613.10 gi|88602724|ref|YP_502902.1| - 0.0009 18.9 13.8 1.6 8.4 0.0 7.7 8 2 2 10 10 10 1 Bacterial type III secretion protein (HrpB1_HrpK) PknG_TPR PF16918.5 gi|88602724|ref|YP_502902.1| - 0.0015 17.3 0.3 0.0015 17.3 0.3 5.1 4 3 1 6 6 6 1 Protein kinase G tetratricopeptide repeat DUF3856 PF12968.7 gi|88602724|ref|YP_502902.1| - 0.0017 18.4 17.5 2.1 8.4 0.0 10.0 9 4 3 12 12 11 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|88602724|ref|YP_502902.1| - 0.0024 17.8 37.2 0.83 9.7 0.1 11.4 13 0 0 13 13 11 3 Tetratricopeptide repeat PPTA PF01239.22 gi|88602724|ref|YP_502902.1| - 0.0092 15.7 8.5 0.055 13.2 0.0 5.7 6 0 0 6 6 5 1 Protein prenyltransferase alpha subunit repeat NRBF2_MIT PF17169.4 gi|88602724|ref|YP_502902.1| - 0.012 15.8 2.9 31 4.9 0.0 6.0 6 1 1 7 7 6 0 MIT domain of nuclear receptor-binding factor 2 ChAPs PF09295.10 gi|88602724|ref|YP_502902.1| - 0.026 13.6 8.5 7.4 5.5 0.1 5.9 3 3 2 6 6 6 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_10 PF13374.6 gi|88602724|ref|YP_502902.1| - 0.07 13.0 54.8 0.4 10.6 0.4 15.3 21 0 0 21 21 16 0 Tetratricopeptide repeat FeoB_Cyto PF17910.1 gi|88602724|ref|YP_502902.1| - 0.093 13.3 0.1 0.093 13.3 0.1 3.6 4 0 0 4 4 3 0 FeoB cytosolic helical domain SHNi-TPR PF10516.9 gi|88602724|ref|YP_502902.1| - 0.14 11.6 16.3 0.18 11.3 0.0 7.5 9 0 0 9 9 8 0 SHNi-TPR MIT PF04212.18 gi|88602724|ref|YP_502902.1| - 0.19 11.8 34.4 3.4 7.8 0.9 11.6 11 1 1 12 12 12 0 MIT (microtubule interacting and transport) domain DDE_Tnp_ISL3 PF01610.17 gi|88602724|ref|YP_502902.1| - 0.21 11.3 6.3 2 8.1 0.1 3.6 2 2 1 3 3 3 0 Transposase TPR_5 PF12688.7 gi|88602724|ref|YP_502902.1| - 0.35 11.1 0.0 0.35 11.1 0.0 6.2 8 0 0 8 8 5 0 Tetratrico peptide repeat MAS20 PF02064.15 gi|88602724|ref|YP_502902.1| - 1.7 8.8 7.0 31 4.7 0.0 5.5 8 0 0 8 8 4 0 MAS20 protein import receptor Acetyltransf_1 PF00583.25 gi|88602725|ref|YP_502903.1| - 2.3e-19 69.8 0.1 2.7e-19 69.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88602725|ref|YP_502903.1| - 4.6e-10 39.8 0.1 7.8e-10 39.1 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88602725|ref|YP_502903.1| - 5.5e-08 32.8 0.0 1.1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.7 gi|88602725|ref|YP_502903.1| - 1.2e-07 31.7 0.0 2.1e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|88602725|ref|YP_502903.1| - 0.0018 18.4 0.0 0.0028 17.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88602725|ref|YP_502903.1| - 0.0028 17.6 0.0 0.0059 16.6 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|88602725|ref|YP_502903.1| - 0.019 15.0 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|88602725|ref|YP_502903.1| - 0.047 13.8 0.0 0.083 13.0 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain MarR PF01047.22 gi|88602726|ref|YP_502904.1| - 7.3e-13 48.2 0.1 1.3e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88602726|ref|YP_502904.1| - 1.7e-10 40.6 0.0 4.4e-10 39.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|88602726|ref|YP_502904.1| - 4.8e-10 39.8 0.2 9.4e-10 38.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|88602726|ref|YP_502904.1| - 5.7e-08 32.2 0.0 1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|88602726|ref|YP_502904.1| - 6.9e-08 32.6 0.1 1.7e-07 31.3 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|88602726|ref|YP_502904.1| - 2.2e-07 30.6 0.0 3.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|88602726|ref|YP_502904.1| - 2.3e-07 30.9 0.2 3.8e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|88602726|ref|YP_502904.1| - 1.8e-06 27.7 0.4 9.1e-06 25.5 0.3 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|88602726|ref|YP_502904.1| - 0.00057 20.2 0.1 0.0017 18.7 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_20 PF12840.7 gi|88602726|ref|YP_502904.1| - 0.0011 19.0 0.1 0.0034 17.4 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain KORA PF16509.5 gi|88602726|ref|YP_502904.1| - 0.0013 19.0 0.1 0.003 17.8 0.1 1.6 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_Crp_2 PF13545.6 gi|88602726|ref|YP_502904.1| - 0.003 17.5 0.1 0.0066 16.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|88602726|ref|YP_502904.1| - 0.0032 17.5 0.0 0.0061 16.6 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator RNA_pol_Rpc34 PF05158.12 gi|88602726|ref|YP_502904.1| - 0.0054 16.1 0.0 0.0067 15.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HxlR PF01638.17 gi|88602726|ref|YP_502904.1| - 0.0065 16.3 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|88602726|ref|YP_502904.1| - 0.0072 16.3 0.1 0.017 15.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain DUF4423 PF14394.6 gi|88602726|ref|YP_502904.1| - 0.01 15.6 0.2 0.024 14.4 0.1 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) PadR PF03551.14 gi|88602726|ref|YP_502904.1| - 0.011 15.6 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_10 PF04967.12 gi|88602726|ref|YP_502904.1| - 0.013 15.3 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_CodY PF08222.11 gi|88602726|ref|YP_502904.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|88602726|ref|YP_502904.1| - 0.016 14.9 0.1 0.043 13.6 0.0 1.7 2 0 0 2 2 1 0 LexA DNA binding domain Ribosomal_S25 PF03297.15 gi|88602726|ref|YP_502904.1| - 0.017 15.3 0.1 0.03 14.5 0.1 1.3 1 0 0 1 1 1 0 S25 ribosomal protein HTH_54 PF18607.1 gi|88602726|ref|YP_502904.1| - 0.018 15.1 0.1 0.03 14.4 0.1 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain DUF3116 PF11313.8 gi|88602726|ref|YP_502904.1| - 0.022 14.6 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) Sigma70_r4 PF04545.16 gi|88602726|ref|YP_502904.1| - 0.023 14.2 0.0 0.055 13.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|88602726|ref|YP_502904.1| - 0.029 14.2 0.0 0.068 13.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family S10_plectin PF03501.15 gi|88602726|ref|YP_502904.1| - 0.036 14.1 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Plectin/S10 domain MqsR_toxin PF15723.5 gi|88602726|ref|YP_502904.1| - 0.039 14.3 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Motility quorum-sensing regulator, toxin of MqsA DUF2250 PF10007.9 gi|88602726|ref|YP_502904.1| - 0.052 13.6 0.4 0.22 11.7 0.3 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.27 gi|88602726|ref|YP_502904.1| - 0.055 13.4 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|88602726|ref|YP_502904.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.16 gi|88602726|ref|YP_502904.1| - 0.081 13.3 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_36 PF13730.6 gi|88602726|ref|YP_502904.1| - 0.086 12.8 0.1 0.2 11.6 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Acetyltransf_1 PF00583.25 gi|88602727|ref|YP_502905.1| - 1.3e-17 64.0 0.0 1.6e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|88602727|ref|YP_502905.1| - 1.7e-16 60.7 0.0 2.2e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|88602727|ref|YP_502905.1| - 6.3e-10 39.9 0.0 7e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|88602727|ref|YP_502905.1| - 2e-08 34.6 0.0 2.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|88602727|ref|YP_502905.1| - 6.4e-08 32.6 0.0 7.7e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88602727|ref|YP_502905.1| - 0.0026 17.9 0.0 0.0047 17.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|88602727|ref|YP_502905.1| - 0.064 13.3 0.0 0.27 11.3 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88602727|ref|YP_502905.1| - 0.065 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein DUF1447 PF07288.11 gi|88602728|ref|YP_502906.1| - 0.15 12.1 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) PIN PF01850.21 gi|88602729|ref|YP_502907.1| - 7.8e-12 45.8 0.0 9.7e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|88602729|ref|YP_502907.1| - 0.0059 16.3 0.0 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) DUF4411 PF14367.6 gi|88602729|ref|YP_502907.1| - 0.014 15.3 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) VapB_antitoxin PF09957.9 gi|88602730|ref|YP_502908.1| - 2.6e-18 65.7 0.8 3.3e-18 65.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB Peptidase_S8 PF00082.22 gi|88602731|ref|YP_502909.1| - 3.3e-45 154.6 2.3 7e-45 153.5 2.3 1.5 1 0 0 1 1 1 1 Subtilase family PKD PF00801.20 gi|88602731|ref|YP_502909.1| - 3.1e-09 36.6 0.0 8e-09 35.2 0.0 1.6 1 0 0 1 1 1 1 PKD domain Peptidase_S8_N PF16361.5 gi|88602731|ref|YP_502909.1| - 0.038 14.5 0.0 0.063 13.8 0.0 1.2 1 0 0 1 1 1 0 N-terminal of Subtilase family EF-hand_6 PF13405.6 gi|88602731|ref|YP_502909.1| - 0.22 11.6 0.7 0.78 9.8 0.1 2.2 2 0 0 2 2 2 0 EF-hand domain DUF4389 PF14333.6 gi|88602733|ref|YP_502911.1| - 8.1e-19 67.3 1.0 1e-18 67.0 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4389) TMEM237 PF15383.6 gi|88602733|ref|YP_502911.1| - 0.11 11.6 0.8 0.11 11.5 0.8 1.1 1 0 0 1 1 1 0 Transmembrane protein 237 Claudin_2 PF13903.6 gi|88602733|ref|YP_502911.1| - 0.14 11.9 0.7 0.17 11.6 0.7 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3040 PF11239.8 gi|88602733|ref|YP_502911.1| - 0.15 12.3 2.0 0.21 11.9 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Aminotran_1_2 PF00155.21 gi|88602734|ref|YP_502912.1| - 3.5e-46 158.0 0.0 4.3e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_1_2 PF00155.21 gi|88602735|ref|YP_502913.1| - 1e-26 94.0 0.0 1.3e-26 93.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|88602735|ref|YP_502913.1| - 0.0014 17.5 0.0 0.002 17.0 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase TPR_2 PF07719.17 gi|88602736|ref|YP_502914.1| - 3.5e-25 86.0 1.0 4.9e-08 32.5 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602736|ref|YP_502914.1| - 1.2e-16 60.1 0.1 7.3e-07 29.4 0.0 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602736|ref|YP_502914.1| - 4.9e-15 54.6 0.8 9.1e-06 25.3 0.0 4.2 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602736|ref|YP_502914.1| - 6.7e-15 55.5 0.0 1.4e-05 25.6 0.0 3.5 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602736|ref|YP_502914.1| - 2.5e-11 43.1 1.2 0.00013 21.6 0.0 3.2 4 0 0 4 4 4 2 TPR repeat TPR_17 PF13431.6 gi|88602736|ref|YP_502914.1| - 1.6e-10 40.6 0.0 0.65 10.5 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602736|ref|YP_502914.1| - 2.1e-10 40.5 0.0 0.00026 21.6 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602736|ref|YP_502914.1| - 2.3e-10 40.5 0.1 0.00011 22.3 0.0 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602736|ref|YP_502914.1| - 9.8e-10 37.9 1.8 0.00015 21.7 0.1 4.9 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602736|ref|YP_502914.1| - 1.5e-09 38.2 0.0 0.012 16.1 0.0 2.8 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602736|ref|YP_502914.1| - 1.2e-08 35.2 0.0 0.0077 16.5 0.0 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602736|ref|YP_502914.1| - 9.5e-08 32.2 0.0 0.001 19.3 0.0 2.2 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|88602736|ref|YP_502914.1| - 5e-07 29.3 0.2 0.084 12.9 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602736|ref|YP_502914.1| - 3.5e-06 27.0 1.4 0.01 15.9 0.1 2.5 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88602736|ref|YP_502914.1| - 1.1e-05 24.6 0.0 0.0091 15.0 0.0 2.1 2 0 0 2 2 2 2 NMDA receptor-regulated protein 1 YfiO PF13525.6 gi|88602736|ref|YP_502914.1| - 1.3e-05 25.0 0.2 1.4 8.6 0.0 3.1 2 1 1 3 3 3 2 Outer membrane lipoprotein PknG_TPR PF16918.5 gi|88602736|ref|YP_502914.1| - 0.00068 18.5 0.0 0.0042 15.9 0.0 1.9 2 0 0 2 2 2 1 Protein kinase G tetratricopeptide repeat TPR_18 PF13512.6 gi|88602736|ref|YP_502914.1| - 0.0018 18.4 0.1 3.4 7.8 0.0 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88602736|ref|YP_502914.1| - 0.0019 18.7 0.0 2 9.3 0.1 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602736|ref|YP_502914.1| - 0.0039 17.0 7.0 0.019 14.8 0.1 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat HemY_N PF07219.13 gi|88602736|ref|YP_502914.1| - 0.016 15.4 0.1 7 6.9 0.0 3.4 4 0 0 4 4 4 0 HemY protein N-terminus Cohesin_load PF10345.9 gi|88602736|ref|YP_502914.1| - 0.016 13.6 0.0 0.23 9.8 0.0 2.0 2 0 0 2 2 2 0 Cohesin loading factor TPR_15 PF13429.6 gi|88602736|ref|YP_502914.1| - 0.022 14.0 0.0 0.21 10.8 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88602736|ref|YP_502914.1| - 0.032 14.3 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF3856) Rapsyn_N PF10579.9 gi|88602736|ref|YP_502914.1| - 0.038 14.1 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.6 gi|88602736|ref|YP_502914.1| - 0.16 11.3 0.1 8.4 5.7 0.0 2.6 2 1 0 3 3 3 0 Soluble NSF attachment protein, SNAP ABC2_membrane_3 PF12698.7 gi|88602737|ref|YP_502915.1| - 1.6e-07 30.8 14.3 1.4e-06 27.7 14.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88602737|ref|YP_502915.1| - 1.3e-06 27.9 16.9 4.7e-06 26.1 16.9 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|88602737|ref|YP_502915.1| - 0.00022 21.2 18.0 0.00022 21.2 18.0 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|88602737|ref|YP_502915.1| - 0.078 12.5 26.6 0.0082 15.7 20.5 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein Amastin PF07344.11 gi|88602737|ref|YP_502915.1| - 6.7 6.5 14.8 3.8 7.3 8.8 3.0 3 1 1 4 4 4 0 Amastin surface glycoprotein ABC2_membrane_3 PF12698.7 gi|88602738|ref|YP_502916.1| - 4.9e-05 22.6 34.8 4.9e-05 22.6 34.8 2.8 1 1 1 2 2 2 1 ABC-2 family transporter protein EAV_GS PF01309.18 gi|88602738|ref|YP_502916.1| - 0.9 9.1 5.1 0.4 10.3 2.1 1.9 1 1 1 2 2 2 0 Equine arteritis virus small envelope glycoprotein ABC_tran PF00005.27 gi|88602739|ref|YP_502917.1| - 9.2e-29 100.7 0.0 1.4e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88602739|ref|YP_502917.1| - 1e-13 51.8 0.5 3.9e-06 26.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88602739|ref|YP_502917.1| - 0.00066 20.4 0.0 0.0028 18.4 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|88602739|ref|YP_502917.1| - 0.00072 20.1 0.6 0.0015 19.1 0.6 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|88602739|ref|YP_502917.1| - 0.0026 17.6 0.3 0.12 12.0 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|88602739|ref|YP_502917.1| - 0.0031 17.0 0.2 1.9 7.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|88602739|ref|YP_502917.1| - 0.004 15.9 0.2 0.62 8.6 0.2 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|88602739|ref|YP_502917.1| - 0.0062 16.3 0.3 0.013 15.2 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain YCII PF03795.14 gi|88602739|ref|YP_502917.1| - 0.027 14.9 0.0 0.61 10.5 0.0 2.2 2 0 0 2 2 2 0 YCII-related domain AAA_24 PF13479.6 gi|88602739|ref|YP_502917.1| - 0.084 12.6 0.0 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|88602739|ref|YP_502917.1| - 0.13 11.9 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|88602739|ref|YP_502917.1| - 0.15 12.0 0.2 0.33 10.8 0.2 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|88602739|ref|YP_502917.1| - 0.19 11.9 0.0 2.4 8.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|88602739|ref|YP_502917.1| - 0.21 11.8 0.6 2.7 8.3 0.2 2.3 2 1 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|88602739|ref|YP_502917.1| - 0.23 10.9 0.2 0.54 9.8 0.1 1.5 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|88602739|ref|YP_502917.1| - 0.24 11.5 0.5 1.5 8.9 0.3 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase PFK PF00365.20 gi|88602740|ref|YP_502918.1| - 5.5e-112 373.7 2.1 6.4e-112 373.5 2.1 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 gi|88602740|ref|YP_502918.1| - 7.2e-05 22.1 0.1 0.00011 21.5 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase NRD1_2 PF01995.16 gi|88602740|ref|YP_502918.1| - 0.0013 18.1 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 Peripla_BP_1 PF00532.21 gi|88602740|ref|YP_502918.1| - 0.02 14.3 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family LpxI_N PF17930.1 gi|88602740|ref|YP_502918.1| - 0.037 13.9 0.2 29 4.6 0.0 3.3 3 0 0 3 3 3 0 LpxI N-terminal domain Peripla_BP_4 PF13407.6 gi|88602740|ref|YP_502918.1| - 0.047 13.3 0.1 0.34 10.4 0.0 2.1 2 1 0 2 2 2 0 Periplasmic binding protein domain DAGK_cat PF00781.24 gi|88602740|ref|YP_502918.1| - 0.05 13.2 2.0 0.056 13.1 0.1 2.2 3 0 0 3 3 3 0 Diacylglycerol kinase catalytic domain DeoC PF01791.9 gi|88602741|ref|YP_502919.1| - 1e-44 152.9 0.0 1.2e-44 152.7 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase IMS PF00817.20 gi|88602744|ref|YP_502922.1| - 1e-46 158.7 0.0 1.5e-46 158.1 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|88602744|ref|YP_502922.1| - 7e-17 62.2 0.1 1.4e-16 61.3 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|88602744|ref|YP_502922.1| - 1e-07 31.8 0.1 2e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|88602744|ref|YP_502922.1| - 1.6e-05 25.4 0.0 3.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|88602744|ref|YP_502922.1| - 0.0083 16.4 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|88602744|ref|YP_502922.1| - 0.0097 15.7 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|88602744|ref|YP_502922.1| - 0.068 13.4 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 Pathogenicity locus ATP-grasp_5 PF13549.6 gi|88602746|ref|YP_502924.1| - 8.2e-64 215.1 0.0 1.2e-63 214.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|88602746|ref|YP_502924.1| - 3.7e-50 169.3 0.1 7.2e-50 168.4 0.1 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|88602746|ref|YP_502924.1| - 1.4e-31 109.4 0.1 1.1e-30 106.4 0.1 2.5 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|88602746|ref|YP_502924.1| - 2.4e-14 53.8 1.3 5.1e-14 52.7 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|88602746|ref|YP_502924.1| - 0.00028 20.5 0.0 0.00067 19.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|88602746|ref|YP_502924.1| - 0.0047 16.5 0.0 0.0085 15.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|88602746|ref|YP_502924.1| - 0.094 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain STAT1_TAZ2bind PF12162.8 gi|88602746|ref|YP_502924.1| - 0.24 11.0 0.8 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 STAT1 TAZ2 binding domain Response_reg PF00072.24 gi|88602747|ref|YP_502925.1| - 7.1e-19 68.0 0.0 9.9e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain MetOD2 PF18548.1 gi|88602747|ref|YP_502925.1| - 7e-05 22.9 0.3 0.00036 20.6 0.3 2.2 2 1 0 2 2 2 1 Metanogen output domain 2 DUF4062 PF13271.6 gi|88602747|ref|YP_502925.1| - 0.078 13.4 0.1 1 9.8 0.1 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4062) Ntox35 PF15534.6 gi|88602747|ref|YP_502925.1| - 0.15 12.5 0.0 0.34 11.4 0.0 1.5 1 1 0 1 1 1 0 Bacterial toxin 35 AAA-ATPase_like PF09820.9 gi|88602748|ref|YP_502926.1| - 4e-16 59.3 0.3 4.7e-16 59.0 0.3 1.0 1 0 0 1 1 1 1 Predicted AAA-ATPase Ferric_reduct PF01794.19 gi|88602749|ref|YP_502927.1| - 1.7e-09 37.9 8.4 1.7e-09 37.9 8.4 1.8 2 0 0 2 2 2 1 Ferric reductase like transmembrane component DUF373 PF04123.13 gi|88602749|ref|YP_502927.1| - 3.6 7.0 12.0 4.6 6.6 12.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) HhH-GPD PF00730.25 gi|88602750|ref|YP_502928.1| - 8.5e-09 35.8 0.0 1.4e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|88602750|ref|YP_502928.1| - 0.015 15.2 0.0 0.039 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif RIIa PF02197.17 gi|88602751|ref|YP_502929.1| - 0.063 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Regulatory subunit of type II PKA R-subunit Gaa1 PF04114.14 gi|88602751|ref|YP_502929.1| - 1.9 7.4 11.8 0.048 12.7 4.9 1.7 1 1 1 2 2 2 0 Gaa1-like, GPI transamidase component CbiQ PF02361.16 gi|88602752|ref|YP_502930.1| - 2.9e-30 105.6 7.2 2.9e-30 105.6 7.2 1.5 2 0 0 2 2 2 1 Cobalt transport protein DPM3 PF08285.11 gi|88602752|ref|YP_502930.1| - 1 9.6 5.1 3.7 7.8 0.2 2.6 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Peptidase_U4 PF03419.13 gi|88602752|ref|YP_502930.1| - 2.9 7.1 9.5 4.9 6.4 9.5 1.5 1 0 0 1 1 1 0 Sporulation factor SpoIIGA ABC_tran PF00005.27 gi|88602753|ref|YP_502931.1| - 9.3e-34 116.9 0.0 1.2e-33 116.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88602753|ref|YP_502931.1| - 3.2e-16 60.0 0.2 8e-10 39.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88602753|ref|YP_502931.1| - 8.2e-10 38.5 0.0 1.8e-09 37.4 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|88602753|ref|YP_502931.1| - 0.00036 20.8 0.0 0.0015 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|88602753|ref|YP_502931.1| - 0.00049 20.7 0.0 0.00063 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88602753|ref|YP_502931.1| - 0.00078 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88602753|ref|YP_502931.1| - 0.00086 19.1 0.0 0.64 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|88602753|ref|YP_502931.1| - 0.0091 15.7 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|88602753|ref|YP_502931.1| - 0.014 14.9 0.0 0.87 9.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 gi|88602753|ref|YP_502931.1| - 0.021 14.6 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|88602753|ref|YP_502931.1| - 0.036 14.3 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|88602753|ref|YP_502931.1| - 0.06 13.6 0.0 0.77 10.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|88602753|ref|YP_502931.1| - 0.076 13.1 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|88602753|ref|YP_502931.1| - 0.086 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|88602753|ref|YP_502931.1| - 0.091 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|88602753|ref|YP_502931.1| - 0.091 12.7 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|88602753|ref|YP_502931.1| - 0.094 11.3 0.0 4.9 5.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|88602753|ref|YP_502931.1| - 0.13 11.4 0.0 0.32 10.1 0.0 1.5 1 1 1 2 2 2 0 G-protein alpha subunit MeaB PF03308.16 gi|88602753|ref|YP_502931.1| - 0.14 11.1 0.0 0.3 10.0 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PDGLE PF13190.6 gi|88602754|ref|YP_502932.1| - 3.5e-17 62.1 0.5 4.7e-17 61.7 0.5 1.2 1 0 0 1 1 1 1 PDGLE domain DUF4064 PF13273.6 gi|88602754|ref|YP_502932.1| - 0.02 15.1 2.9 0.66 10.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) m04gp34like PF12216.8 gi|88602754|ref|YP_502932.1| - 0.076 12.6 0.1 0.13 11.8 0.0 1.4 2 0 0 2 2 2 0 Immune evasion protein TPPK_C PF12555.8 gi|88602754|ref|YP_502932.1| - 0.093 12.8 2.9 3.2 7.9 0.8 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal CD34_antigen PF06365.12 gi|88602754|ref|YP_502932.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 CD34/Podocalyxin family ERGIC_N PF13850.6 gi|88602754|ref|YP_502932.1| - 0.29 11.5 1.2 0.96 9.8 0.1 1.9 2 0 0 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) LapA_dom PF06305.11 gi|88602754|ref|YP_502932.1| - 2.3 8.1 4.5 5.9 6.8 0.4 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2613 PF11021.8 gi|88602754|ref|YP_502932.1| - 3.9 7.7 9.1 1 9.5 1.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) Gram_pos_anchor PF00746.21 gi|88602754|ref|YP_502932.1| - 8.5 6.4 7.1 1.7 8.6 1.1 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Insulin_TMD PF17870.1 gi|88602754|ref|YP_502932.1| - 8.8 6.5 7.2 1.1 9.4 0.6 2.2 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment CbiM PF01891.16 gi|88602755|ref|YP_502933.1| - 1.1e-54 185.5 24.1 1.2e-54 185.3 24.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ThrE PF06738.12 gi|88602755|ref|YP_502933.1| - 0.054 12.9 19.1 0.033 13.6 9.2 2.3 1 1 1 2 2 2 0 Putative threonine/serine exporter PAS PF00989.25 gi|88602756|ref|YP_502934.1| - 8.2e-45 151.4 3.1 7.1e-12 45.3 0.0 7.8 8 0 0 8 8 8 6 PAS fold PAS_9 PF13426.7 gi|88602756|ref|YP_502934.1| - 8.5e-43 144.9 5.3 6.6e-13 48.8 0.0 8.0 8 1 0 8 8 8 6 PAS domain PAS_4 PF08448.10 gi|88602756|ref|YP_502934.1| - 2e-35 121.4 0.1 1.3e-11 44.7 0.0 8.8 8 2 0 8 8 8 5 PAS fold PAS_8 PF13188.7 gi|88602756|ref|YP_502934.1| - 3.3e-31 106.8 0.7 0.00017 21.5 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS_3 PF08447.12 gi|88602756|ref|YP_502934.1| - 6.6e-21 74.4 0.0 2.4e-11 43.7 0.0 5.1 5 1 0 5 5 5 3 PAS fold Response_reg PF00072.24 gi|88602756|ref|YP_502934.1| - 3.9e-20 72.1 0.0 1.1e-19 70.6 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.7 gi|88602756|ref|YP_502934.1| - 1.5e-15 57.4 2.1 3.9e-07 30.2 0.0 6.2 6 1 0 6 6 6 3 PAS fold HATPase_c PF02518.26 gi|88602756|ref|YP_502934.1| - 2.5e-10 40.8 0.0 1e-09 38.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|88602756|ref|YP_502934.1| - 1.6e-06 28.5 0.0 9.3e-06 26.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|88602756|ref|YP_502934.1| - 1.3e-05 25.5 0.0 9.4e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 GAF domain SPOB_a PF14689.6 gi|88602756|ref|YP_502934.1| - 0.0013 18.3 0.4 0.004 16.8 0.4 1.8 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF4478 PF14793.6 gi|88602756|ref|YP_502934.1| - 0.051 13.5 0.0 0.42 10.5 0.0 2.4 2 0 0 2 2 2 0 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GAF PF01590.26 gi|88602756|ref|YP_502934.1| - 0.065 13.9 0.0 0.17 12.6 0.0 1.8 1 0 0 1 1 1 0 GAF domain TPR_1 PF00515.28 gi|88602758|ref|YP_502936.1| - 7.2e-48 158.5 8.7 1.1e-10 40.8 0.7 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602758|ref|YP_502936.1| - 1.8e-38 127.5 10.4 3.5e-08 33.0 0.8 6.3 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602758|ref|YP_502936.1| - 4.4e-38 129.4 25.6 4.5e-12 46.1 3.5 4.9 1 1 3 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602758|ref|YP_502936.1| - 2.7e-35 117.6 5.6 2.5e-08 33.5 0.3 6.4 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602758|ref|YP_502936.1| - 4.2e-32 108.2 8.9 3.1e-07 30.3 0.1 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602758|ref|YP_502936.1| - 5.5e-31 106.9 1.0 3.2e-11 43.7 1.3 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602758|ref|YP_502936.1| - 2.6e-29 100.6 9.7 8.1e-08 31.8 1.5 6.2 1 1 5 6 6 6 6 TPR repeat TPR_19 PF14559.6 gi|88602758|ref|YP_502936.1| - 3.7e-29 101.0 6.2 1.3e-10 41.7 1.0 3.7 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602758|ref|YP_502936.1| - 1.3e-28 97.2 6.9 4.9e-06 26.9 0.4 6.1 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602758|ref|YP_502936.1| - 1.4e-26 90.5 6.6 3.8e-06 26.6 0.2 5.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602758|ref|YP_502936.1| - 4.8e-24 83.5 13.5 1e-05 25.2 0.5 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602758|ref|YP_502936.1| - 1.3e-20 72.6 6.3 0.00025 21.5 0.2 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602758|ref|YP_502936.1| - 9e-17 61.1 11.0 5.3e-09 36.2 1.4 3.0 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88602758|ref|YP_502936.1| - 6.9e-16 58.2 2.6 3.4e-05 23.9 0.0 4.1 1 1 4 5 5 5 4 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602758|ref|YP_502936.1| - 8.7e-11 41.4 0.5 5.2e-05 22.3 0.5 2.9 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|88602758|ref|YP_502936.1| - 2.5e-10 39.9 1.6 0.034 14.7 0.0 5.6 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602758|ref|YP_502936.1| - 3.7e-07 29.7 0.9 6.5e-06 25.6 0.8 3.2 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88602758|ref|YP_502936.1| - 6.7e-07 29.6 0.8 0.012 15.9 0.1 3.6 2 1 2 4 4 4 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88602758|ref|YP_502936.1| - 1.6e-06 27.8 0.1 0.0061 16.0 0.0 3.0 1 1 2 3 3 3 1 Coatomer epsilon subunit BTAD PF03704.17 gi|88602758|ref|YP_502936.1| - 2.9e-06 27.8 4.1 0.16 12.4 1.9 3.2 1 1 3 4 4 4 3 Bacterial transcriptional activator domain TPR_5 PF12688.7 gi|88602758|ref|YP_502936.1| - 1.2e-05 25.5 0.4 0.00012 22.3 0.3 2.4 2 1 1 3 3 3 1 Tetratrico peptide repeat DUF3856 PF12968.7 gi|88602758|ref|YP_502936.1| - 0.00021 21.4 0.8 1.9 8.6 0.1 3.8 2 1 1 3 3 2 1 Domain of Unknown Function (DUF3856) HEAT_2 PF13646.6 gi|88602758|ref|YP_502936.1| - 0.00048 20.5 0.1 0.52 10.7 0.0 2.4 1 1 1 2 2 2 2 HEAT repeats TPR_3 PF07720.12 gi|88602758|ref|YP_502936.1| - 0.00057 19.8 6.3 0.18 11.9 0.2 3.3 3 0 0 3 3 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602758|ref|YP_502936.1| - 0.0006 19.8 9.7 3.1 8.0 0.5 5.3 3 3 3 6 6 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_MalT PF17874.1 gi|88602758|ref|YP_502936.1| - 0.00076 19.0 0.4 0.43 9.9 0.0 2.9 2 1 1 3 3 3 1 MalT-like TPR region Wzy_C_2 PF11846.8 gi|88602758|ref|YP_502936.1| - 0.00097 19.1 1.3 0.073 13.0 0.0 3.2 2 1 2 4 4 4 1 Virulence factor membrane-bound polymerase, C-terminal MIT PF04212.18 gi|88602758|ref|YP_502936.1| - 0.00097 19.2 2.8 1.3 9.1 0.2 4.2 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain PPR PF01535.20 gi|88602758|ref|YP_502936.1| - 0.0014 18.8 4.8 11 6.5 0.1 4.6 5 0 0 5 5 4 0 PPR repeat TOM20_plant PF06552.12 gi|88602758|ref|YP_502936.1| - 0.0015 18.3 0.2 0.074 12.8 0.0 3.0 1 1 0 2 2 2 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.9 gi|88602758|ref|YP_502936.1| - 0.0033 17.2 0.8 0.39 10.4 0.1 3.1 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain PknG_TPR PF16918.5 gi|88602758|ref|YP_502936.1| - 0.0034 16.2 0.1 0.052 12.3 0.0 2.0 1 1 1 2 2 2 2 Protein kinase G tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88602758|ref|YP_502936.1| - 0.0061 17.0 0.5 0.35 11.3 0.1 2.8 3 0 0 3 3 3 1 Alkyl sulfatase dimerisation RPN7 PF10602.9 gi|88602758|ref|YP_502936.1| - 0.0074 16.0 1.1 3.1 7.5 0.1 3.8 2 1 2 4 4 4 1 26S proteasome subunit RPN7 SNAP PF14938.6 gi|88602758|ref|YP_502936.1| - 0.014 14.8 3.4 1.1 8.6 0.4 2.3 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP SRP_TPR_like PF17004.5 gi|88602758|ref|YP_502936.1| - 0.016 15.2 0.3 0.55 10.3 0.1 2.4 1 1 1 2 2 2 0 Putative TPR-like repeat SPO22 PF08631.10 gi|88602758|ref|YP_502936.1| - 0.017 14.7 0.7 3.6 7.0 0.0 3.1 3 1 1 4 4 4 0 Meiosis protein SPO22/ZIP4 like TPPII_N PF12583.8 gi|88602758|ref|YP_502936.1| - 0.025 15.2 2.8 5.2 7.7 0.1 3.6 1 1 3 4 4 3 0 Tripeptidyl peptidase II N terminal Peptidase_M20 PF01546.28 gi|88602759|ref|YP_502937.1| - 3.8e-34 118.2 0.0 5.1e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|88602759|ref|YP_502937.1| - 1.5e-16 60.3 0.0 2.6e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|88602759|ref|YP_502937.1| - 0.0076 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 LSM PF01423.22 gi|88602760|ref|YP_502938.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 LSM domain Radical_SAM PF04055.21 gi|88602761|ref|YP_502939.1| - 3.7e-32 112.0 0.0 6.9e-32 111.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|88602761|ref|YP_502939.1| - 1.4e-18 67.1 0.2 2.4e-18 66.3 0.2 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|88602761|ref|YP_502939.1| - 4.9e-08 33.4 0.0 1.4e-07 31.9 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|88602761|ref|YP_502939.1| - 3.2e-07 30.5 0.0 1.3e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain FtsJ PF01728.19 gi|88602762|ref|YP_502940.1| - 6.7e-48 163.1 0.0 7.6e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|88602762|ref|YP_502940.1| - 8.6e-06 25.7 0.0 2.3e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602762|ref|YP_502940.1| - 0.00018 21.3 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602762|ref|YP_502940.1| - 0.016 15.9 0.0 0.11 13.3 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|88602762|ref|YP_502940.1| - 0.18 11.4 0.0 0.44 10.2 0.0 1.6 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F PCNA_N PF00705.18 gi|88602763|ref|YP_502941.1| - 7.8e-10 38.6 0.1 1.7e-09 37.5 0.1 1.5 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|88602763|ref|YP_502941.1| - 9.5e-09 35.5 0.1 2.6e-06 27.6 0.0 2.7 1 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|88602763|ref|YP_502941.1| - 0.043 12.9 0.0 0.14 11.2 0.0 1.8 1 1 0 1 1 1 0 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|88602763|ref|YP_502941.1| - 0.05 13.0 0.0 0.097 12.1 0.0 1.7 1 1 0 1 1 1 0 Rad9 Hus1 PF04005.12 gi|88602763|ref|YP_502941.1| - 0.12 11.5 0.0 0.59 9.2 0.0 1.9 2 0 0 2 2 2 0 Hus1-like protein DNA_primase_lrg PF04104.14 gi|88602764|ref|YP_502942.1| - 3e-27 95.7 0.0 4.9e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit NADH_4Fe-4S PF10589.9 gi|88602764|ref|YP_502942.1| - 0.037 14.1 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ThiP_synth PF10120.9 gi|88602765|ref|YP_502943.1| - 3.6e-26 91.7 0.0 4.5e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase Ribosomal_S17e PF00833.18 gi|88602766|ref|YP_502944.1| - 3.1e-12 46.5 0.7 3.1e-12 46.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|88602767|ref|YP_502945.1| - 3e-95 318.2 0.0 3.4e-95 318.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family UVR PF02151.19 gi|88602767|ref|YP_502945.1| - 0.035 13.9 0.8 0.47 10.3 0.1 2.6 2 0 0 2 2 2 0 UvrB/uvrC motif DapB_C PF05173.14 gi|88602768|ref|YP_502946.1| - 4.7e-42 142.8 0.0 8.2e-42 142.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|88602768|ref|YP_502946.1| - 9e-24 84.0 0.9 1.4e-23 83.4 0.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|88602768|ref|YP_502946.1| - 0.0069 17.0 0.0 0.013 16.1 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|88602768|ref|YP_502946.1| - 0.043 14.5 0.3 0.13 12.9 0.1 1.9 2 0 0 2 2 2 0 PglD N-terminal domain CoA_binding PF02629.19 gi|88602768|ref|YP_502946.1| - 0.067 13.9 2.2 0.18 12.5 1.5 2.0 1 1 1 2 2 2 0 CoA binding domain Fer4 PF00037.27 gi|88602769|ref|YP_502947.1| - 2.5e-17 61.9 18.7 5e-09 35.6 5.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88602769|ref|YP_502947.1| - 2.4e-14 53.2 25.4 9.4e-11 41.7 14.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602769|ref|YP_502947.1| - 3.4e-14 52.2 17.5 1.3e-07 31.4 5.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88602769|ref|YP_502947.1| - 2.2e-12 46.3 15.6 3.7e-06 26.7 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88602769|ref|YP_502947.1| - 1.6e-11 44.6 28.6 7.7e-09 36.0 16.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602769|ref|YP_502947.1| - 3.9e-11 42.9 13.7 4.7e-11 42.7 13.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602769|ref|YP_502947.1| - 1.9e-10 40.7 15.8 2.9e-10 40.1 15.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602769|ref|YP_502947.1| - 4.2e-10 40.4 13.9 9.5e-05 23.3 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|88602769|ref|YP_502947.1| - 1.4e-08 34.6 17.4 0.00012 22.3 4.2 2.1 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88602769|ref|YP_502947.1| - 2.1e-06 28.2 15.6 0.0013 19.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|88602769|ref|YP_502947.1| - 2.8e-06 27.8 12.9 0.0016 18.9 2.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88602769|ref|YP_502947.1| - 4.5e-05 23.8 14.1 0.018 15.5 14.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88602769|ref|YP_502947.1| - 0.00044 20.9 3.9 0.00044 20.9 3.9 2.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|88602769|ref|YP_502947.1| - 0.00055 20.7 18.5 0.11 13.5 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88602769|ref|YP_502947.1| - 0.0006 20.6 11.2 0.037 14.9 1.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88602769|ref|YP_502947.1| - 0.0015 18.7 15.1 0.0051 17.0 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Semialdhyde_dh PF01118.24 gi|88602770|ref|YP_502948.1| - 2.2e-35 121.7 0.0 3.1e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|88602770|ref|YP_502948.1| - 1e-30 107.2 0.0 1.5e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.6 gi|88602770|ref|YP_502948.1| - 0.00017 21.6 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|88602770|ref|YP_502948.1| - 0.0002 21.6 0.0 0.00033 20.9 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|88602770|ref|YP_502948.1| - 0.0065 16.6 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|88602770|ref|YP_502948.1| - 0.036 13.5 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DXP_reductoisom PF02670.16 gi|88602770|ref|YP_502948.1| - 0.063 14.0 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Ldh_1_N PF00056.23 gi|88602770|ref|YP_502948.1| - 0.11 12.6 0.0 0.3 11.2 0.0 1.8 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Alba PF01918.21 gi|88602771|ref|YP_502949.1| - 2.2e-17 62.6 0.6 3e-17 62.2 0.6 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|88602771|ref|YP_502949.1| - 0.053 13.5 0.5 0.08 12.9 0.5 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P MarC PF01914.17 gi|88602773|ref|YP_502951.1| - 4.1e-51 173.3 13.2 4.7e-51 173.1 13.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.18 gi|88602773|ref|YP_502951.1| - 1.5e-08 34.4 4.5 0.00035 20.1 0.4 2.1 2 0 0 2 2 2 2 LysE type translocator TerC PF03741.16 gi|88602773|ref|YP_502951.1| - 5.7e-05 22.9 10.7 0.0013 18.4 10.3 2.3 1 1 0 1 1 1 1 Integral membrane protein TerC family Phage_holin_3_6 PF07332.11 gi|88602773|ref|YP_502951.1| - 0.089 12.8 0.4 0.089 12.8 0.4 2.3 3 1 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|88602773|ref|YP_502951.1| - 0.74 8.5 7.1 0.22 10.2 0.8 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Sulf_transp PF04143.14 gi|88602773|ref|YP_502951.1| - 0.79 9.2 12.4 0.03 13.9 3.2 2.5 2 1 1 3 3 3 0 Sulphur transport DUF4342 PF14242.6 gi|88602773|ref|YP_502951.1| - 0.91 9.6 4.3 0.38 10.8 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) DUF21 PF01595.20 gi|88602773|ref|YP_502951.1| - 3 7.5 11.0 0.037 13.7 1.7 2.3 2 1 0 2 2 2 0 Cyclin M transmembrane N-terminal domain HupF_HypC PF01455.18 gi|88602774|ref|YP_502952.1| - 2.8e-24 85.0 0.0 3.2e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 HupF/HypC family DUF1722 PF08349.11 gi|88602775|ref|YP_502953.1| - 2e-37 128.1 0.0 3.3e-37 127.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|88602775|ref|YP_502953.1| - 2.3e-28 98.9 0.0 3.2e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF3225 PF11533.8 gi|88602775|ref|YP_502953.1| - 0.07 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) FHA PF00498.26 gi|88602776|ref|YP_502954.1| - 5.1e-16 58.8 0.0 8.3e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|88602776|ref|YP_502954.1| - 4.6e-05 23.7 0.0 6.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain AAA_2 PF07724.14 gi|88602777|ref|YP_502955.1| - 1.5e-11 44.7 0.0 2.6e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|88602777|ref|YP_502955.1| - 0.00024 21.1 0.0 0.00055 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|88602777|ref|YP_502955.1| - 0.00041 20.9 0.0 0.0054 17.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|88602777|ref|YP_502955.1| - 0.00042 20.9 0.0 0.0026 18.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|88602777|ref|YP_502955.1| - 0.002 18.6 0.0 0.0061 17.0 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|88602777|ref|YP_502955.1| - 0.0021 17.8 0.0 0.0055 16.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88602777|ref|YP_502955.1| - 0.0033 17.8 0.2 0.057 13.8 0.0 2.7 2 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|88602777|ref|YP_502955.1| - 0.0063 16.8 0.0 0.1 12.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|88602777|ref|YP_502955.1| - 0.0079 15.8 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain E1_UFD PF09358.10 gi|88602777|ref|YP_502955.1| - 0.019 15.6 0.0 0.064 14.0 0.0 1.9 1 0 0 1 1 1 0 Ubiquitin fold domain Sigma54_activat PF00158.26 gi|88602777|ref|YP_502955.1| - 0.022 14.5 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|88602777|ref|YP_502955.1| - 0.029 14.3 0.1 0.2 11.6 0.0 2.4 3 0 0 3 3 3 0 NACHT domain AAA_24 PF13479.6 gi|88602777|ref|YP_502955.1| - 0.059 13.1 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|88602777|ref|YP_502955.1| - 0.12 12.0 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|88602777|ref|YP_502955.1| - 0.16 11.2 0.0 0.33 10.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Pkinase PF00069.25 gi|88602778|ref|YP_502956.1| - 7.4e-35 120.6 0.0 1.5e-34 119.6 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|88602778|ref|YP_502956.1| - 2.2e-18 66.5 0.0 3.9e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_2 PF07719.17 gi|88602778|ref|YP_502956.1| - 2.3e-11 42.9 5.7 0.27 11.4 0.0 7.8 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602778|ref|YP_502956.1| - 2.1e-09 36.8 2.3 0.097 12.5 0.0 6.3 6 0 0 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602778|ref|YP_502956.1| - 1.1e-08 35.1 5.0 2.6e-06 27.6 0.2 4.1 4 1 0 4 4 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|88602778|ref|YP_502956.1| - 1.6e-08 35.0 0.0 0.0058 17.3 0.0 3.9 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602778|ref|YP_502956.1| - 9.6e-08 32.2 1.1 0.64 10.8 0.0 5.5 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602778|ref|YP_502956.1| - 1.9e-07 31.4 0.7 0.2 12.2 0.0 4.0 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602778|ref|YP_502956.1| - 2e-07 30.7 6.7 0.016 15.4 0.1 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602778|ref|YP_502956.1| - 2.6e-05 24.2 0.4 1.2 9.3 0.0 3.7 3 0 0 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat TPR_14 PF13428.6 gi|88602778|ref|YP_502956.1| - 4.4e-05 23.9 4.7 0.25 12.3 0.3 5.6 4 1 3 7 7 6 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602778|ref|YP_502956.1| - 0.00021 21.1 0.1 0.074 13.1 0.0 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat Kdo PF06293.14 gi|88602778|ref|YP_502956.1| - 0.0013 18.1 0.0 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family TPR_9 PF13371.6 gi|88602778|ref|YP_502956.1| - 0.0019 18.3 0.0 2.6 8.3 0.0 4.0 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602778|ref|YP_502956.1| - 0.0056 16.9 7.0 1.2 9.5 0.0 4.7 5 1 1 6 6 5 2 Tetratricopeptide repeat DUF1955 PF09205.10 gi|88602778|ref|YP_502956.1| - 0.012 15.3 0.8 0.033 13.9 0.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) TPR_17 PF13431.6 gi|88602778|ref|YP_502956.1| - 0.015 15.7 0.0 55 4.5 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88602778|ref|YP_502956.1| - 0.051 13.0 0.4 0.46 9.9 0.0 2.2 2 0 0 2 2 2 0 Coatomer epsilon subunit NPV_P10 PF05531.12 gi|88602779|ref|YP_502957.1| - 0.00072 20.0 0.9 0.04 14.4 0.1 3.6 3 0 0 3 3 3 1 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|88602779|ref|YP_502957.1| - 0.012 16.3 8.2 0.1 13.3 1.3 3.4 3 1 1 4 4 4 0 Occludin homology domain RNA_pol_Rpb5_N PF03871.14 gi|88602779|ref|YP_502957.1| - 0.071 13.7 0.0 11 6.7 0.0 2.6 2 0 0 2 2 2 0 RNA polymerase Rpb5, N-terminal domain MADF_DNA_bdg PF10545.9 gi|88602779|ref|YP_502957.1| - 0.13 12.6 0.7 0.45 10.9 0.1 2.2 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like MapZ_EC1 PF18041.1 gi|88602779|ref|YP_502957.1| - 0.13 12.5 2.0 6 7.1 0.8 2.8 2 0 0 2 2 2 0 MapZ extracellular domain 1 BLOC1_2 PF10046.9 gi|88602779|ref|YP_502957.1| - 0.21 11.9 8.3 38 4.7 4.2 4.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_DNA_bd PF12329.8 gi|88602779|ref|YP_502957.1| - 1 9.4 12.0 35 4.5 9.1 3.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding PP2C PF00481.21 gi|88602780|ref|YP_502958.1| - 2.4e-13 50.3 0.0 5.5e-10 39.3 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C PP2C_2 PF13672.6 gi|88602780|ref|YP_502958.1| - 2.5e-11 43.6 0.0 4.2e-11 42.9 0.0 1.3 1 1 0 1 1 1 1 Protein phosphatase 2C CARD PF00619.21 gi|88602780|ref|YP_502958.1| - 0.055 13.5 0.1 3.4 7.8 0.0 2.8 3 0 0 3 3 3 0 Caspase recruitment domain DUF3566 PF12089.8 gi|88602781|ref|YP_502959.1| - 0.00048 20.5 15.0 0.057 13.8 9.9 2.1 1 1 1 2 2 2 2 Transmembrane domain of unknown function (DUF3566) Yip1 PF04893.17 gi|88602781|ref|YP_502959.1| - 0.018 14.7 12.7 0.029 14.1 12.7 1.3 1 0 0 1 1 1 0 Yip1 domain DUF5379 PF17350.2 gi|88602781|ref|YP_502959.1| - 0.063 13.6 24.3 1.4 9.2 7.5 2.8 1 1 1 2 2 2 0 Family of unknown function (DUF5379) Tmemb_170 PF10190.9 gi|88602781|ref|YP_502959.1| - 1.6 9.1 14.9 0.24 11.8 5.4 2.1 1 1 1 2 2 2 0 Putative transmembrane protein 170 MccV PF17508.2 gi|88602781|ref|YP_502959.1| - 2.5 8.7 6.2 3.1 8.4 6.2 1.3 1 0 0 1 1 1 0 Microcin V bacteriocin RTX PF02382.15 gi|88602781|ref|YP_502959.1| - 5.2 6.7 7.5 6 6.5 7.5 1.1 1 0 0 1 1 1 0 N-terminal domain in RTX protein Methyltransf_31 PF13847.6 gi|88602782|ref|YP_502960.1| - 9.1e-16 58.0 0.0 1.2e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88602782|ref|YP_502960.1| - 2.8e-15 56.8 0.0 4.5e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602782|ref|YP_502960.1| - 2.5e-14 53.7 0.0 3.4e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602782|ref|YP_502960.1| - 7.8e-14 51.6 0.0 1e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|88602782|ref|YP_502960.1| - 4e-13 49.5 0.0 5e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88602782|ref|YP_502960.1| - 1.9e-10 40.9 0.0 2.6e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|88602782|ref|YP_502960.1| - 5.4e-08 33.5 0.0 7.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|88602782|ref|YP_502960.1| - 4.7e-06 26.8 0.1 9.9e-06 25.8 0.1 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|88602782|ref|YP_502960.1| - 2.3e-05 24.1 0.0 6.3e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|88602782|ref|YP_502960.1| - 6.6e-05 22.3 0.0 8.3e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|88602782|ref|YP_502960.1| - 0.0024 16.9 0.0 0.003 16.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DRE2_N PF16803.5 gi|88602782|ref|YP_502960.1| - 0.0024 18.1 0.0 0.0034 17.6 0.0 1.3 1 0 0 1 1 1 1 Fe-S cluster assembly protein DRE2 N-terminus PrmA PF06325.13 gi|88602782|ref|YP_502960.1| - 0.0028 17.1 0.0 0.0043 16.5 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|88602782|ref|YP_502960.1| - 0.003 17.1 0.0 0.0043 16.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|88602782|ref|YP_502960.1| - 0.012 15.4 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_3 PF01596.17 gi|88602782|ref|YP_502960.1| - 0.04 13.1 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_18 PF12847.7 gi|88602782|ref|YP_502960.1| - 0.054 13.4 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain POR PF01558.18 gi|88602782|ref|YP_502960.1| - 0.086 12.9 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase MetW PF07021.12 gi|88602782|ref|YP_502960.1| - 0.09 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW GCD14 PF08704.10 gi|88602782|ref|YP_502960.1| - 0.11 12.1 0.0 0.51 10.0 0.0 1.8 1 1 1 2 2 2 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.17 gi|88602782|ref|YP_502960.1| - 0.13 11.7 0.0 0.56 9.6 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase rRNA_methylase PF06962.12 gi|88602782|ref|YP_502960.1| - 0.13 12.2 0.0 0.94 9.5 0.0 2.0 1 1 0 1 1 1 0 Putative rRNA methylase Fibrillarin PF01269.17 gi|88602782|ref|YP_502960.1| - 0.18 10.9 0.0 0.42 9.7 0.0 1.7 1 1 1 2 2 2 0 Fibrillarin HD PF01966.22 gi|88602783|ref|YP_502961.1| - 3.9e-15 56.2 0.7 7e-15 55.3 0.7 1.4 1 0 0 1 1 1 1 HD domain TPR_2 PF07719.17 gi|88602784|ref|YP_502962.1| - 5.5e-21 72.9 0.1 1.2e-05 25.0 0.1 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88602784|ref|YP_502962.1| - 3.8e-18 64.5 0.4 1.6e-06 27.6 0.1 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602784|ref|YP_502962.1| - 5.5e-17 61.0 1.0 0.00036 21.1 0.0 4.7 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602784|ref|YP_502962.1| - 4.7e-15 55.9 0.7 1.1e-06 29.1 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602784|ref|YP_502962.1| - 6.4e-15 55.4 0.0 3.6e-07 30.6 0.0 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602784|ref|YP_502962.1| - 1.9e-14 52.9 0.3 0.00043 20.5 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602784|ref|YP_502962.1| - 9.1e-14 50.9 0.1 7.3e-05 22.4 0.0 4.7 2 1 3 5 5 5 4 TPR repeat TPR_8 PF13181.6 gi|88602784|ref|YP_502962.1| - 2.4e-13 49.1 0.0 4e-06 26.6 0.1 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602784|ref|YP_502962.1| - 3.9e-12 46.3 0.3 0.0016 18.7 0.0 3.8 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88602784|ref|YP_502962.1| - 4.5e-10 39.5 1.6 1.7e-05 24.8 0.2 2.7 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602784|ref|YP_502962.1| - 1.5e-05 24.7 1.7 0.051 13.6 0.0 4.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88602784|ref|YP_502962.1| - 4.9e-05 23.1 1.4 5.6 7.0 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602784|ref|YP_502962.1| - 6.1e-05 23.4 0.2 1.5 9.6 0.0 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602784|ref|YP_502962.1| - 0.00048 20.3 0.1 0.19 12.0 0.2 2.6 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|88602784|ref|YP_502962.1| - 0.00077 18.8 0.0 1.1 8.4 0.0 2.1 1 1 0 2 2 2 2 Tetratricopeptide repeat DUF5113 PF17140.4 gi|88602784|ref|YP_502962.1| - 0.0081 16.0 0.3 0.42 10.4 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF5113) TPR_4 PF07721.14 gi|88602784|ref|YP_502962.1| - 0.021 15.4 4.4 16 6.5 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR PF01535.20 gi|88602784|ref|YP_502962.1| - 0.033 14.4 0.1 2.6 8.5 0.0 3.1 2 0 0 2 2 2 0 PPR repeat MIT PF04212.18 gi|88602784|ref|YP_502962.1| - 0.064 13.3 0.4 12 6.0 0.2 3.3 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|88602784|ref|YP_502962.1| - 0.29 10.0 0.0 5.4 5.8 0.0 2.1 1 1 0 2 2 2 0 NMDA receptor-regulated protein 1 AAA_12 PF13087.6 gi|88602785|ref|YP_502963.1| - 4.6e-21 75.4 0.0 7.6e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|88602785|ref|YP_502963.1| - 1.8e-17 64.0 0.0 5.8e-09 36.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|88602785|ref|YP_502963.1| - 8.3e-13 48.9 0.0 1.9e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|88602785|ref|YP_502963.1| - 2.9e-12 46.7 0.0 5.5e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|88602785|ref|YP_502963.1| - 2.9e-05 23.7 0.0 5.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|88602785|ref|YP_502963.1| - 0.00011 22.5 0.0 0.00046 20.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain Helicase_RecD PF05127.14 gi|88602785|ref|YP_502963.1| - 0.00048 20.0 0.0 0.00097 19.0 0.0 1.5 1 0 0 1 1 1 1 Helicase UvrD_C_2 PF13538.6 gi|88602785|ref|YP_502963.1| - 0.0042 16.9 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.15 gi|88602785|ref|YP_502963.1| - 0.0053 16.8 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|88602785|ref|YP_502963.1| - 0.014 15.1 0.2 0.046 13.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|88602785|ref|YP_502963.1| - 0.038 14.4 0.1 0.17 12.3 0.0 2.2 2 1 0 2 2 1 0 AAA ATPase domain DEAD PF00270.29 gi|88602785|ref|YP_502963.1| - 0.044 13.5 0.0 0.091 12.5 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA PF00004.29 gi|88602785|ref|YP_502963.1| - 0.048 14.1 0.0 0.16 12.4 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Cas_Cas4 PF01930.17 gi|88602785|ref|YP_502963.1| - 0.05 13.7 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF83 Viral_helicase1 PF01443.18 gi|88602785|ref|YP_502963.1| - 0.083 12.6 0.2 1.9 8.1 0.0 2.8 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.6 gi|88602785|ref|YP_502963.1| - 0.093 12.3 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain PDDEXK_1 PF12705.7 gi|88602785|ref|YP_502963.1| - 0.11 12.4 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily DUF2075 PF09848.9 gi|88602785|ref|YP_502963.1| - 0.13 11.5 0.0 8 5.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Zn-ribbon_8 PF09723.10 gi|88602787|ref|YP_502965.1| - 0.066 13.3 11.4 0.38 10.9 0.5 3.8 4 0 0 4 4 4 0 Zinc ribbon domain Churchill PF06573.11 gi|88602787|ref|YP_502965.1| - 0.75 10.1 4.3 16 5.9 0.5 2.5 1 1 1 2 2 2 0 Churchill protein TF_Zn_Ribbon PF08271.12 gi|88602787|ref|YP_502965.1| - 1.9 8.1 12.7 1 8.9 0.6 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.13 gi|88602787|ref|YP_502965.1| - 3.8 7.6 7.3 3 7.9 0.3 2.7 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Helicase_C PF00271.31 gi|88602788|ref|YP_502966.1| - 2.9e-07 30.8 0.0 1e-06 29.0 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|88602788|ref|YP_502966.1| - 5.5e-05 23.0 0.0 0.13 12.0 0.0 2.7 2 0 0 2 2 2 2 DEAD/DEAH box helicase Propeptide_C25 PF08126.11 gi|88602788|ref|YP_502966.1| - 0.051 12.7 0.0 0.25 10.4 0.0 2.0 2 0 0 2 2 2 0 Propeptide_C25 zf-SNAP50_C PF12251.8 gi|88602788|ref|YP_502966.1| - 0.16 11.6 1.3 0.3 10.7 0.2 2.0 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal Arc_PepC PF06819.11 gi|88602788|ref|YP_502966.1| - 0.44 10.7 3.6 1.8 8.7 0.2 3.3 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain EVE PF01878.18 gi|88602789|ref|YP_502967.1| - 1.6e-21 76.8 0.0 1.8e-21 76.7 0.0 1.0 1 0 0 1 1 1 1 EVE domain DDE_Tnp_IS1 PF03400.13 gi|88602790|ref|YP_502968.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88602790|ref|YP_502968.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88602790|ref|YP_502968.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88602791|ref|YP_502969.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88602791|ref|YP_502969.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88602791|ref|YP_502969.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88602791|ref|YP_502969.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF2080 PF09853.9 gi|88602792|ref|YP_502970.1| - 1.6e-26 91.8 0.1 1.7e-26 91.7 0.1 1.0 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) DDE_Tnp_IS66 PF03050.14 gi|88602793|ref|YP_502971.1| - 1.3e-33 116.7 1.7 1.3e-32 113.4 0.0 2.4 2 1 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|88602793|ref|YP_502971.1| - 7.9e-09 35.8 1.3 1.8e-08 34.7 1.3 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.6 gi|88602793|ref|YP_502971.1| - 0.011 16.4 1.0 0.031 14.9 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUC7 PF03194.15 gi|88602793|ref|YP_502971.1| - 0.051 13.2 1.2 0.11 12.2 1.2 1.4 1 0 0 1 1 1 0 LUC7 N_terminus DDE_Tnp_IS240 PF13610.6 gi|88602793|ref|YP_502971.1| - 0.4 10.9 2.8 9.6 6.4 0.0 2.9 3 0 0 3 3 3 0 DDE domain Macoilin PF09726.9 gi|88602793|ref|YP_502971.1| - 0.42 9.1 4.2 0.59 8.6 4.2 1.2 1 0 0 1 1 1 0 Macoilin family DDE_5 PF13546.6 gi|88602795|ref|YP_502973.1| - 2.7e-15 56.5 0.0 8.4e-15 54.8 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88602795|ref|YP_502973.1| - 5.1e-12 45.9 0.9 8.2e-12 45.2 0.9 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88602795|ref|YP_502973.1| - 5e-05 22.7 0.1 7.4e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|88602796|ref|YP_502974.1| - 1.5e-12 47.6 8.7 1.5e-12 47.6 8.7 2.3 1 1 1 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|88602796|ref|YP_502974.1| - 0.0033 17.7 1.8 0.16 12.2 0.0 2.8 3 0 0 3 3 3 2 Transposase DDE domain DUF772 PF05598.11 gi|88602797|ref|YP_502975.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88602797|ref|YP_502975.1| - 6.5e-11 42.5 0.0 6.5e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88602797|ref|YP_502975.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88602797|ref|YP_502975.1| - 0.19 12.1 3.7 0.31 11.5 3.7 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88602797|ref|YP_502975.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 UPF0047 PF01894.17 gi|88602798|ref|YP_502976.1| - 2.3e-44 150.2 0.0 2.7e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 RNA_pol_A_bac PF01000.26 gi|88602799|ref|YP_502977.1| - 0.087 13.2 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain ABC2_membrane PF01061.24 gi|88602800|ref|YP_502978.1| - 2.6e-36 125.0 27.3 2.6e-36 125.0 27.3 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88602800|ref|YP_502978.1| - 1.9e-12 47.0 29.5 1.9e-12 47.0 29.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88602800|ref|YP_502978.1| - 0.031 13.6 22.0 0.11 11.8 22.0 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|88602801|ref|YP_502979.1| - 2.2e-34 118.9 0.1 6.2e-34 117.5 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|88602801|ref|YP_502979.1| - 1.2e-11 45.0 2.7 2.2e-07 31.0 0.5 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|88602801|ref|YP_502979.1| - 1.2e-11 45.1 0.0 2.7e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|88602801|ref|YP_502979.1| - 5.1e-07 29.7 0.1 0.0038 17.0 0.1 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|88602801|ref|YP_502979.1| - 5.9e-05 23.5 0.0 0.0004 20.8 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|88602801|ref|YP_502979.1| - 0.0014 18.1 0.1 0.053 13.0 0.1 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|88602801|ref|YP_502979.1| - 0.013 15.9 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|88602801|ref|YP_502979.1| - 0.055 13.1 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Imm40 PF15569.6 gi|88602801|ref|YP_502979.1| - 0.069 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 40 AAA_28 PF13521.6 gi|88602801|ref|YP_502979.1| - 0.095 12.9 1.2 0.82 9.9 0.2 2.4 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|88602801|ref|YP_502979.1| - 0.095 13.0 2.7 0.8 10.0 1.3 2.6 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|88602801|ref|YP_502979.1| - 0.13 12.0 0.2 0.3 10.8 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|88602801|ref|YP_502979.1| - 0.14 12.6 5.3 0.07 13.6 3.0 2.0 2 1 0 2 2 2 0 AAA domain PadR PF03551.14 gi|88602802|ref|YP_502980.1| - 8.5e-13 48.1 0.0 1.5e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|88602802|ref|YP_502980.1| - 0.0099 16.5 0.0 0.02 15.5 0.0 1.6 1 1 0 1 1 1 1 Replication terminator protein DASH_Ask1 PF08655.10 gi|88602802|ref|YP_502980.1| - 0.064 13.2 0.1 0.2 11.6 0.1 1.8 1 1 0 1 1 1 0 DASH complex subunit Ask1 Thioredoxin_2 PF13098.6 gi|88602803|ref|YP_502981.1| - 0.0077 16.7 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.10 gi|88602803|ref|YP_502981.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Redoxin Thioredoxin_8 PF13905.6 gi|88602803|ref|YP_502981.1| - 0.013 15.8 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like Glutaredoxin PF00462.24 gi|88602803|ref|YP_502981.1| - 0.033 14.4 0.1 0.066 13.5 0.1 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin PF00085.20 gi|88602803|ref|YP_502981.1| - 0.073 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Lon_C PF05362.13 gi|88602804|ref|YP_502982.1| - 3.8e-85 284.6 0.4 6.6e-85 283.8 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 gi|88602804|ref|YP_502982.1| - 2e-21 76.8 0.0 8.2e-21 74.8 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) LON_substr_bdg PF02190.16 gi|88602804|ref|YP_502982.1| - 4.3e-11 43.1 0.0 1e-10 41.8 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA_5 PF07728.14 gi|88602804|ref|YP_502982.1| - 1.1e-09 38.4 0.0 1.2e-08 35.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|88602804|ref|YP_502982.1| - 1.5e-08 34.5 0.0 2.6e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 gi|88602804|ref|YP_502982.1| - 9.5e-06 26.1 0.1 8.1e-05 23.1 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|88602804|ref|YP_502982.1| - 1.1e-05 25.7 0.1 0.00043 20.6 0.0 3.2 3 1 0 3 3 2 1 AAA domain AAA_PrkA PF08298.11 gi|88602804|ref|YP_502982.1| - 2.6e-05 23.3 0.0 5.5e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 PrkA AAA domain AAA_18 PF13238.6 gi|88602804|ref|YP_502982.1| - 0.00051 20.6 0.1 0.048 14.2 0.1 2.8 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|88602804|ref|YP_502982.1| - 0.00054 19.7 0.0 0.0024 17.6 0.0 2.1 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Zeta_toxin PF06414.12 gi|88602804|ref|YP_502982.1| - 0.00068 19.0 0.3 0.024 13.9 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin IstB_IS21 PF01695.17 gi|88602804|ref|YP_502982.1| - 0.0013 18.5 0.0 0.0031 17.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|88602804|ref|YP_502982.1| - 0.0018 18.4 0.0 0.0053 16.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_3 PF07726.11 gi|88602804|ref|YP_502982.1| - 0.0027 17.6 0.0 0.014 15.3 0.0 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|88602804|ref|YP_502982.1| - 0.0031 17.4 0.0 0.0075 16.2 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain TIP49 PF06068.13 gi|88602804|ref|YP_502982.1| - 0.0066 15.7 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|88602804|ref|YP_502982.1| - 0.0098 16.1 0.2 0.03 14.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|88602804|ref|YP_502982.1| - 0.015 15.2 0.3 0.49 10.3 0.1 2.9 2 1 1 3 3 3 0 NTPase RNA_helicase PF00910.22 gi|88602804|ref|YP_502982.1| - 0.039 14.3 0.0 0.14 12.6 0.0 2.0 2 0 0 2 2 1 0 RNA helicase NACHT PF05729.12 gi|88602804|ref|YP_502982.1| - 0.04 13.8 0.1 0.46 10.4 0.0 2.5 3 0 0 3 3 2 0 NACHT domain TsaE PF02367.17 gi|88602804|ref|YP_502982.1| - 0.044 13.8 0.6 0.091 12.8 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|88602804|ref|YP_502982.1| - 0.077 13.3 0.7 1.2 9.5 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|88602804|ref|YP_502982.1| - 0.079 12.7 0.3 0.24 11.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|88602804|ref|YP_502982.1| - 0.079 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|88602804|ref|YP_502982.1| - 0.082 12.1 0.9 0.17 11.1 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain DUF815 PF05673.13 gi|88602804|ref|YP_502982.1| - 0.09 11.9 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Viral_helicase1 PF01443.18 gi|88602804|ref|YP_502982.1| - 0.1 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.21 gi|88602804|ref|YP_502982.1| - 0.11 11.9 0.6 0.7 9.2 0.1 2.4 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|88602804|ref|YP_502982.1| - 0.14 12.0 0.6 0.5 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|88602804|ref|YP_502982.1| - 0.38 10.4 2.1 0.75 9.5 0.1 2.4 3 0 0 3 3 2 0 Cytidylate kinase MarR PF01047.22 gi|88602805|ref|YP_502983.1| - 2.4e-10 40.2 0.0 4.4e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88602805|ref|YP_502983.1| - 1.6e-07 31.1 0.0 2.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|88602805|ref|YP_502983.1| - 5.8e-06 26.7 0.0 1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|88602805|ref|YP_502983.1| - 0.0002 21.2 0.0 0.0015 18.4 0.0 2.1 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|88602805|ref|YP_502983.1| - 0.00038 20.6 0.0 0.00056 20.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|88602805|ref|YP_502983.1| - 0.0057 16.4 0.0 0.011 15.5 0.0 1.7 1 1 0 1 1 1 1 IclR helix-turn-helix domain UPF0122 PF04297.14 gi|88602805|ref|YP_502983.1| - 0.014 15.7 0.4 0.035 14.4 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_WhiA PF02650.14 gi|88602805|ref|YP_502983.1| - 0.043 14.1 0.0 0.089 13.1 0.0 1.5 1 0 0 1 1 1 0 WhiA C-terminal HTH domain Rrf2 PF02082.20 gi|88602805|ref|YP_502983.1| - 0.052 13.9 0.0 0.15 12.4 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator KIP1 PF07765.12 gi|88602805|ref|YP_502983.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 KIP1-like protein T6SS_HCP PF05638.12 gi|88602806|ref|YP_502984.1| - 1.5e-13 51.3 0.2 2.1e-13 50.8 0.2 1.2 1 0 0 1 1 1 1 Type VI secretion system effector, Hcp DDE_Tnp_1_6 PF13751.6 gi|88602808|ref|YP_502986.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88602808|ref|YP_502986.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88602808|ref|YP_502986.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88602808|ref|YP_502986.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DUF234 PF03008.14 gi|88602809|ref|YP_502987.1| - 1.3e-31 108.9 1.1 2.8e-31 107.9 1.1 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|88602809|ref|YP_502987.1| - 2.1e-20 73.6 0.0 7.2e-19 68.6 0.0 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|88602809|ref|YP_502987.1| - 3.1e-06 27.3 0.0 7.5e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain UPF0102 PF02021.17 gi|88602809|ref|YP_502987.1| - 0.0063 16.7 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AAA_16 PF13191.6 gi|88602809|ref|YP_502987.1| - 0.0069 16.8 0.2 0.039 14.3 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.7 gi|88602809|ref|YP_502987.1| - 0.024 14.5 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|88602809|ref|YP_502987.1| - 0.025 14.4 0.1 0.053 13.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|88602809|ref|YP_502987.1| - 0.044 13.6 0.0 0.095 12.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4884 PF16225.5 gi|88602809|ref|YP_502987.1| - 0.11 12.5 0.4 8.1 6.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4884) AAA_22 PF13401.6 gi|88602809|ref|YP_502987.1| - 0.14 12.4 0.0 0.34 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF4469 PF14734.6 gi|88602810|ref|YP_502988.1| - 0.0006 19.9 0.0 0.015 15.5 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4469) with IG-like fold TIG PF01833.24 gi|88602810|ref|YP_502988.1| - 0.0013 18.8 2.1 0.74 9.9 0.5 2.8 3 0 0 3 3 3 2 IPT/TIG domain Cyc-maltodext_N PF09087.11 gi|88602810|ref|YP_502988.1| - 0.0029 17.8 0.0 0.007 16.6 0.0 1.6 1 0 0 1 1 1 1 Cyclomaltodextrinase, N-terminal MG2 PF01835.19 gi|88602810|ref|YP_502988.1| - 0.0096 16.4 0.0 1.4 9.4 0.0 2.7 2 0 0 2 2 2 1 MG2 domain NPCBM_assoc PF10633.9 gi|88602810|ref|YP_502988.1| - 0.055 13.7 0.3 5.6 7.3 0.0 3.3 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase LEA_2 PF03168.13 gi|88602812|ref|YP_502990.1| - 1.4e-12 48.0 0.0 2e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Late embryogenesis abundant protein DUF1356 PF07092.12 gi|88602812|ref|YP_502990.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) HxlR PF01638.17 gi|88602813|ref|YP_502991.1| - 3.5e-35 119.7 0.1 4.4e-35 119.4 0.1 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|88602813|ref|YP_502991.1| - 0.001 18.9 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|88602813|ref|YP_502991.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Tautomerase PF01361.21 gi|88602814|ref|YP_502992.1| - 5.2e-11 42.3 0.0 5.7e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|88602814|ref|YP_502992.1| - 0.025 14.7 0.0 0.028 14.5 0.0 1.1 1 0 0 1 1 1 0 Tautomerase enzyme Nitroreductase PF00881.24 gi|88602815|ref|YP_502993.1| - 5.1e-27 95.0 0.0 6.2e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.27 gi|88602815|ref|YP_502993.1| - 1.1e-09 37.7 13.9 1.6e-05 24.5 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain TM1586_NiRdase PF14512.6 gi|88602815|ref|YP_502993.1| - 6.8e-09 35.6 0.1 0.037 13.6 0.1 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase Fer4_9 PF13187.6 gi|88602815|ref|YP_502993.1| - 2e-07 31.0 12.6 4.6e-07 29.9 12.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88602815|ref|YP_502993.1| - 4e-07 30.9 8.8 0.0002 22.2 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|88602815|ref|YP_502993.1| - 4e-07 30.5 37.8 1.3e-05 25.7 14.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602815|ref|YP_502993.1| - 4.3e-07 29.7 15.3 0.00024 21.0 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88602815|ref|YP_502993.1| - 5.6e-06 26.4 15.4 3.5e-05 23.8 15.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88602815|ref|YP_502993.1| - 9.4e-06 25.4 13.0 0.00024 21.0 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88602815|ref|YP_502993.1| - 0.0009 19.3 13.7 0.04 14.1 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88602815|ref|YP_502993.1| - 0.0076 16.8 17.3 0.35 11.5 17.3 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88602815|ref|YP_502993.1| - 0.035 14.9 0.2 0.035 14.9 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|88602815|ref|YP_502993.1| - 0.075 13.5 17.3 2.7 8.5 17.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain ComX PF05952.12 gi|88602815|ref|YP_502993.1| - 0.17 11.8 0.1 0.36 10.8 0.1 1.5 1 0 0 1 1 1 0 Bacillus competence pheromone ComX Fer4_4 PF12800.7 gi|88602815|ref|YP_502993.1| - 0.22 12.1 16.5 0.34 11.5 5.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88602815|ref|YP_502993.1| - 0.31 11.6 11.9 0.41 11.2 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88602815|ref|YP_502993.1| - 5.1 8.0 12.2 15 6.5 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88602815|ref|YP_502993.1| - 6.1 8.0 22.7 1.4 10.0 7.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1100 PF06500.11 gi|88602816|ref|YP_502994.1| - 3.1e-10 39.4 0.0 4.4e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S15 PF02129.18 gi|88602816|ref|YP_502994.1| - 1.3e-07 31.5 0.0 4.6e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 gi|88602816|ref|YP_502994.1| - 7.6e-07 28.8 0.0 9.6e-06 25.2 0.0 2.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 gi|88602816|ref|YP_502994.1| - 6.7e-06 25.0 0.0 0.01 14.5 0.0 2.3 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|88602816|ref|YP_502994.1| - 9.9e-05 22.1 0.0 0.0018 18.0 0.0 2.3 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|88602816|ref|YP_502994.1| - 0.00099 19.8 0.1 0.0032 18.1 0.0 1.7 1 1 0 2 2 2 1 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|88602816|ref|YP_502994.1| - 0.0099 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_M75 PF09375.10 gi|88602816|ref|YP_502994.1| - 0.17 11.4 0.4 0.25 10.8 0.4 1.2 1 0 0 1 1 1 0 Imelysin HTH_17 PF12728.7 gi|88602817|ref|YP_502995.1| - 8.7e-07 29.0 0.0 1.9e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain dCache_1 PF02743.18 gi|88602819|ref|YP_502997.1| - 3.6e-12 46.6 0.1 5.4e-12 46.0 0.1 1.2 1 0 0 1 1 1 1 Cache domain NUDIX-like PF09296.11 gi|88602819|ref|YP_502997.1| - 0.11 13.1 0.0 0.2 12.3 0.0 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain DUF1294 PF06961.13 gi|88602820|ref|YP_502998.1| - 2.1e-19 69.5 0.1 3.4e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF2569 PF10754.9 gi|88602820|ref|YP_502998.1| - 0.035 14.6 3.5 0.084 13.3 3.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) Isochorismatase PF00857.20 gi|88602821|ref|YP_502999.1| - 1.2e-35 123.3 0.0 1.3e-35 123.2 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Acetyltransf_1 PF00583.25 gi|88602822|ref|YP_503000.1| - 9.7e-14 51.6 0.0 1.7e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88602822|ref|YP_503000.1| - 3e-09 37.2 0.0 5.9e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain EutQ PF06249.12 gi|88602822|ref|YP_503000.1| - 1.4e-08 34.7 0.0 2.4e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Acetyltransf_10 PF13673.7 gi|88602822|ref|YP_503000.1| - 1.8e-06 27.9 0.0 4.1e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Cupin_2 PF07883.11 gi|88602822|ref|YP_503000.1| - 2.5e-06 27.1 0.0 7.7e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 gi|88602822|ref|YP_503000.1| - 1.4e-05 24.8 0.1 3.3e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 AraC-binding-like domain AraC_binding PF02311.19 gi|88602822|ref|YP_503000.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|88602822|ref|YP_503000.1| - 0.0031 17.2 0.1 0.0074 16.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) FR47 PF08445.10 gi|88602822|ref|YP_503000.1| - 0.0054 16.7 0.0 0.0097 15.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|88602822|ref|YP_503000.1| - 0.012 15.8 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88602822|ref|YP_503000.1| - 0.013 15.7 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|88602822|ref|YP_503000.1| - 0.02 15.0 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Cupin_6 PF12852.7 gi|88602822|ref|YP_503000.1| - 0.026 14.3 0.0 0.051 13.3 0.0 1.5 2 0 0 2 2 2 0 Cupin V4R PF02830.18 gi|88602825|ref|YP_503003.1| - 5.1e-17 61.6 0.8 7.8e-17 61.1 0.8 1.3 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|88602825|ref|YP_503003.1| - 7.3e-07 29.0 0.7 7.3e-07 29.0 0.7 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|88602825|ref|YP_503003.1| - 3.5e-05 23.6 0.0 0.00013 21.8 0.0 2.0 3 0 0 3 3 3 1 MarR family MarR PF01047.22 gi|88602825|ref|YP_503003.1| - 4.8e-05 23.2 0.1 9.6e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|88602825|ref|YP_503003.1| - 0.00018 21.5 0.0 0.00046 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|88602825|ref|YP_503003.1| - 0.028 14.9 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|88602825|ref|YP_503003.1| - 0.033 14.0 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|88602825|ref|YP_503003.1| - 0.07 12.7 0.4 0.24 11.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NTP_transf_8 PF12281.8 gi|88602825|ref|YP_503003.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase Flavodoxin_1 PF00258.25 gi|88602826|ref|YP_503004.1| - 8.4e-10 39.0 0.0 1.3e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|88602826|ref|YP_503004.1| - 1.1e-05 25.5 0.2 1.9e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|88602826|ref|YP_503004.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|88602826|ref|YP_503004.1| - 0.14 12.8 0.0 0.4 11.3 0.0 1.9 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Transglut_core PF01841.19 gi|88602827|ref|YP_503005.1| - 1.2e-21 77.2 0.0 2.5e-21 76.2 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily MIT PF04212.18 gi|88602827|ref|YP_503005.1| - 0.0056 16.7 1.6 0.01 15.9 1.6 1.4 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain SMBP PF16785.5 gi|88602827|ref|YP_503005.1| - 0.025 14.8 0.1 0.043 14.0 0.1 1.3 1 0 0 1 1 1 0 Small metal-binding protein USP8_dimer PF08969.11 gi|88602827|ref|YP_503005.1| - 0.033 14.4 0.1 0.065 13.4 0.1 1.4 1 0 0 1 1 1 0 USP8 dimerisation domain GYD PF08734.11 gi|88602828|ref|YP_503006.1| - 1.1e-23 83.0 0.0 1.2e-23 82.9 0.0 1.0 1 0 0 1 1 1 1 GYD domain MIase PF02426.16 gi|88602828|ref|YP_503006.1| - 0.0058 16.8 0.0 0.0084 16.2 0.0 1.3 1 1 0 1 1 1 1 Muconolactone delta-isomerase AsnC_trans_reg PF01037.21 gi|88602828|ref|YP_503006.1| - 0.095 12.7 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain MarC PF01914.17 gi|88602829|ref|YP_503007.1| - 2.7e-44 151.0 17.3 3.1e-44 150.8 17.3 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2721 PF11026.8 gi|88602829|ref|YP_503007.1| - 9.8 6.1 13.7 0.7 9.8 5.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Lactamase_B_2 PF12706.7 gi|88602830|ref|YP_503008.1| - 3e-18 66.1 0.0 8.7e-18 64.6 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88602830|ref|YP_503008.1| - 0.00098 19.2 0.8 0.0011 19.0 0.8 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF308 PF03729.13 gi|88602831|ref|YP_503009.1| - 2.5e-10 40.5 27.3 4.3e-06 27.0 15.3 3.2 1 1 2 3 3 3 2 Short repeat of unknown function (DUF308) 7TMR-DISM_7TM PF07695.11 gi|88602831|ref|YP_503009.1| - 0.36 10.7 31.4 0.08 12.8 10.2 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF973 PF06157.11 gi|88602831|ref|YP_503009.1| - 3.6 6.6 38.3 1.3 8.0 14.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF973) Radical_SAM PF04055.21 gi|88602832|ref|YP_503010.1| - 2.8e-14 53.8 0.0 5.4e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|88602832|ref|YP_503010.1| - 5.3e-05 23.6 1.3 0.00011 22.6 1.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|88602832|ref|YP_503010.1| - 0.0012 19.2 0.0 0.0027 18.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|88602832|ref|YP_503010.1| - 0.0018 18.4 0.0 0.0038 17.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain AcetylCoA_hyd_C PF13336.6 gi|88602833|ref|YP_503011.1| - 1.2e-62 210.4 0.0 2.4e-62 209.4 0.0 1.5 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|88602833|ref|YP_503011.1| - 3e-13 50.2 0.0 5.5e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain DeoRC PF00455.22 gi|88602833|ref|YP_503011.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 DeoR C terminal sensor domain DNA_alkylation PF08713.11 gi|88602834|ref|YP_503012.1| - 9.1e-63 211.8 1.5 1e-62 211.6 1.5 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.6 gi|88602834|ref|YP_503012.1| - 0.0047 17.3 0.1 0.012 16.0 0.1 1.7 1 1 0 1 1 1 1 HEAT repeats HisKA_7TM PF16927.5 gi|88602835|ref|YP_503013.1| - 7.3e-18 65.4 25.6 1e-17 64.9 25.6 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_9 PF13426.7 gi|88602835|ref|YP_503013.1| - 5.3e-11 42.7 0.0 1.8e-10 41.0 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|88602835|ref|YP_503013.1| - 2.4e-10 40.9 0.0 5.3e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88602835|ref|YP_503013.1| - 8.5e-10 38.6 0.0 2e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|88602835|ref|YP_503013.1| - 1.6e-06 28.3 0.0 3.1e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|88602835|ref|YP_503013.1| - 0.0011 19.0 0.0 0.0035 17.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.6 gi|88602835|ref|YP_503013.1| - 0.049 13.3 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_2 PF07719.17 gi|88602836|ref|YP_503014.1| - 3.3e-05 23.7 2.1 0.17 12.0 0.1 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602836|ref|YP_503014.1| - 0.0061 16.8 0.1 1.2 9.5 0.1 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602836|ref|YP_503014.1| - 0.0095 16.7 0.3 26 6.0 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602836|ref|YP_503014.1| - 0.027 14.7 0.1 4 7.9 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Fer4_24 PF18109.1 gi|88602836|ref|YP_503014.1| - 0.089 13.1 0.2 0.23 11.8 0.2 1.7 1 0 0 1 1 1 0 Ferredoxin I 4Fe-4S cluster domain TPR_7 PF13176.6 gi|88602836|ref|YP_503014.1| - 0.25 11.5 2.1 2 8.6 0.1 3.4 3 1 0 3 3 3 0 Tetratricopeptide repeat DUF99 PF01949.16 gi|88602837|ref|YP_503015.1| - 3e-62 209.3 0.0 3.4e-62 209.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 RRM_1 PF00076.22 gi|88602838|ref|YP_503016.1| - 6.1e-20 70.8 0.0 9.2e-20 70.3 0.0 1.3 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_5 PF13893.6 gi|88602838|ref|YP_503016.1| - 0.00064 19.3 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_7 PF16367.5 gi|88602838|ref|YP_503016.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 RNA recognition motif RRM_3 PF08777.11 gi|88602838|ref|YP_503016.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA binding motif Palm_thioest PF02089.15 gi|88602839|ref|YP_503017.1| - 4.1e-06 26.8 0.0 4.8e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Abhydrolase_6 PF12697.7 gi|88602839|ref|YP_503017.1| - 1e-05 26.3 0.0 1.4e-05 25.9 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase_2 PF01674.18 gi|88602839|ref|YP_503017.1| - 2.2e-05 24.1 0.0 3.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 2) LCAT PF02450.15 gi|88602839|ref|YP_503017.1| - 0.00026 20.3 0.0 0.00039 19.7 0.0 1.1 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Abhydrolase_1 PF00561.20 gi|88602839|ref|YP_503017.1| - 0.00083 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.13 gi|88602839|ref|YP_503017.1| - 0.00099 18.9 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Hydrolase_4 PF12146.8 gi|88602839|ref|YP_503017.1| - 0.0023 17.2 0.0 0.0035 16.6 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF900 PF05990.12 gi|88602839|ref|YP_503017.1| - 0.0044 16.6 0.0 0.0063 16.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) DUF915 PF06028.11 gi|88602839|ref|YP_503017.1| - 0.014 14.7 0.0 0.17 11.2 0.0 2.4 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) DUF676 PF05057.14 gi|88602839|ref|YP_503017.1| - 0.25 10.8 0.0 0.45 10.0 0.0 1.3 1 1 0 1 1 1 0 Putative serine esterase (DUF676) DUF2115 PF09888.9 gi|88602840|ref|YP_503018.1| - 2.9e-59 200.3 0.0 3.3e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF1192 PF06698.11 gi|88602840|ref|YP_503018.1| - 0.068 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) MS_channel PF00924.18 gi|88602841|ref|YP_503019.1| - 2.1e-51 174.4 2.3 4.4e-51 173.4 2.3 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel CMD PF02627.20 gi|88602842|ref|YP_503020.1| - 4e-13 49.2 0.1 4.9e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family LupA PF18242.1 gi|88602842|ref|YP_503020.1| - 0.023 14.4 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Legionella ubiquitin-specific protease A domain DUF2017 PF09438.10 gi|88602842|ref|YP_503020.1| - 0.028 14.3 0.1 0.034 14.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) Nre_N PF04894.12 gi|88602843|ref|YP_503021.1| - 3.6e-76 256.6 0.0 5e-76 256.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|88602843|ref|YP_503021.1| - 4.5e-33 113.5 0.0 7.6e-33 112.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Response_reg PF00072.24 gi|88602844|ref|YP_503022.1| - 1.8e-20 73.1 0.0 4e-20 72.0 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain IFT20 PF14931.6 gi|88602844|ref|YP_503022.1| - 0.079 13.1 0.5 0.13 12.4 0.5 1.4 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 RRM_1 PF00076.22 gi|88602845|ref|YP_503023.1| - 3.1e-22 78.2 0.0 4.1e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_occluded PF16842.5 gi|88602845|ref|YP_503023.1| - 2.9e-06 27.0 0.0 3.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Occluded RNA-recognition motif RRM_5 PF13893.6 gi|88602845|ref|YP_503023.1| - 1.1e-05 25.0 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_3 PF08777.11 gi|88602845|ref|YP_503023.1| - 0.017 15.1 0.0 0.021 14.8 0.0 1.1 1 0 0 1 1 1 0 RNA binding motif DUF3759 PF12585.8 gi|88602845|ref|YP_503023.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) Calcipressin PF04847.12 gi|88602845|ref|YP_503023.1| - 0.15 11.8 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Calcipressin RNA_bind PF08675.11 gi|88602845|ref|YP_503023.1| - 0.18 11.9 0.0 0.24 11.4 0.0 1.1 1 0 0 1 1 1 0 RNA binding domain CARDB PF07705.11 gi|88602846|ref|YP_503024.1| - 3.1e-06 27.4 0.0 4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 CARDB Cupin_2 PF07883.11 gi|88602847|ref|YP_503025.1| - 3.9e-16 58.5 0.0 1.2e-09 37.8 0.0 2.3 2 0 0 2 2 2 2 Cupin domain AraC_binding PF02311.19 gi|88602847|ref|YP_503025.1| - 5.6e-09 36.0 0.0 0.0036 17.2 0.0 2.2 2 0 0 2 2 2 2 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|88602847|ref|YP_503025.1| - 1.1e-06 28.5 0.0 0.016 14.9 0.0 2.2 2 0 0 2 2 2 2 AraC-binding-like domain MannoseP_isomer PF01050.18 gi|88602847|ref|YP_503025.1| - 1.9e-05 24.6 0.0 0.0033 17.3 0.0 2.2 2 0 0 2 2 2 2 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|88602847|ref|YP_503025.1| - 0.00019 21.1 0.0 0.0087 15.7 0.0 2.3 2 0 0 2 2 2 1 Cupin EutQ PF06249.12 gi|88602847|ref|YP_503025.1| - 0.0076 16.0 0.0 0.028 14.2 0.0 1.9 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 gi|88602847|ref|YP_503025.1| - 0.04 13.6 0.0 1.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF861) Yip1 PF04893.17 gi|88602848|ref|YP_503026.1| - 0.26 11.0 11.8 0.29 10.8 11.3 1.4 1 1 0 1 1 1 0 Yip1 domain DUF2207 PF09972.9 gi|88602848|ref|YP_503026.1| - 4.4 6.0 6.0 4.9 5.8 6.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4430 PF14478.6 gi|88602849|ref|YP_503027.1| - 1e-06 29.2 0.4 0.0042 17.6 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4430) Phage_Mu_Gp45 PF06890.12 gi|88602849|ref|YP_503027.1| - 0.0092 15.7 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Bacteriophage Mu Gp45 protein Elf1 PF05129.13 gi|88602853|ref|YP_503031.1| - 0.083 12.9 4.0 1.3 9.2 0.1 3.3 3 1 1 4 4 4 0 Transcription elongation factor Elf1 like zf-RRN7 PF11781.8 gi|88602853|ref|YP_503031.1| - 0.1 12.3 4.6 2.9 7.7 2.3 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-Di19 PF05605.12 gi|88602853|ref|YP_503031.1| - 0.11 12.8 2.4 10 6.5 0.1 3.0 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Lar_restr_allev PF14354.6 gi|88602853|ref|YP_503031.1| - 0.19 12.1 2.0 11 6.5 0.2 2.9 3 0 0 3 3 3 0 Restriction alleviation protein Lar zf-Sec23_Sec24 PF04810.15 gi|88602853|ref|YP_503031.1| - 0.29 11.2 6.6 10 6.2 0.0 3.7 3 1 0 3 3 3 0 Sec23/Sec24 zinc finger Prok-RING_4 PF14447.6 gi|88602853|ref|YP_503031.1| - 5.6 6.9 8.6 2.7 7.9 0.1 3.3 4 0 0 4 4 4 0 Prokaryotic RING finger family 4 NUDIX PF00293.28 gi|88602854|ref|YP_503032.1| - 2.5e-17 63.1 0.0 4.4e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 gi|88602854|ref|YP_503032.1| - 2.5e-10 39.8 1.6 4.3e-10 39.1 1.6 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|88602854|ref|YP_503032.1| - 0.011 15.7 0.1 0.019 15.0 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|88602854|ref|YP_503032.1| - 0.04 13.8 0.1 0.04 13.8 0.1 2.5 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|88602854|ref|YP_503032.1| - 0.39 10.5 2.6 9.8 6.1 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|88602854|ref|YP_503032.1| - 1.3 9.0 4.6 8.6 6.4 4.6 2.3 1 1 0 1 1 1 0 Nudix N-terminal GATase PF00117.28 gi|88602855|ref|YP_503033.1| - 1.6e-13 50.9 0.0 2e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|88602855|ref|YP_503033.1| - 0.00091 18.9 0.4 0.0018 17.9 0.4 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|88602855|ref|YP_503033.1| - 0.0011 18.7 3.1 0.0091 15.8 3.1 2.1 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|88602855|ref|YP_503033.1| - 0.0078 16.1 0.0 0.33 10.8 0.0 2.5 1 1 1 2 2 2 1 SNO glutamine amidotransferase family Diphthami_syn_2 PF01902.17 gi|88602856|ref|YP_503034.1| - 3.9e-61 206.4 0.0 4.2e-61 206.2 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|88602856|ref|YP_503034.1| - 0.017 14.7 0.0 0.046 13.3 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Methyltransf_25 PF13649.6 gi|88602857|ref|YP_503035.1| - 6e-09 36.5 0.0 8.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602857|ref|YP_503035.1| - 7.3e-08 33.0 0.0 1.1e-07 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602857|ref|YP_503035.1| - 0.00014 21.8 0.0 0.00026 20.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602857|ref|YP_503035.1| - 0.00023 21.0 0.0 0.00049 19.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88602857|ref|YP_503035.1| - 0.00044 20.9 0.0 0.00066 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88602857|ref|YP_503035.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|88602857|ref|YP_503035.1| - 0.0066 15.9 0.0 0.014 14.9 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase TehB PF03848.14 gi|88602857|ref|YP_503035.1| - 0.0083 15.6 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|88602857|ref|YP_503035.1| - 0.033 13.1 0.0 0.042 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) NodS PF05401.11 gi|88602857|ref|YP_503035.1| - 0.095 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_15 PF09445.10 gi|88602857|ref|YP_503035.1| - 0.11 12.0 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|88602857|ref|YP_503035.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|88602857|ref|YP_503035.1| - 0.19 11.4 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TraB PF01963.17 gi|88602858|ref|YP_503036.1| - 3.1e-27 96.1 0.5 4.4e-27 95.6 0.5 1.1 1 0 0 1 1 1 1 TraB family UL42 PF17638.2 gi|88602858|ref|YP_503036.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 HCMV UL42 FeoB_Cyto PF17910.1 gi|88602858|ref|YP_503036.1| - 0.36 11.4 2.5 0.25 11.9 0.6 1.8 2 1 0 2 2 2 0 FeoB cytosolic helical domain CxxCxxCC PF03692.15 gi|88602859|ref|YP_503037.1| - 6.3e-13 49.2 1.4 1.2e-12 48.4 1.4 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain GATase PF00117.28 gi|88602860|ref|YP_503038.1| - 3.7e-34 118.2 0.0 4.2e-34 118.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88602860|ref|YP_503038.1| - 9.2e-10 38.6 1.6 1.2e-08 35.0 0.9 2.5 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|88602860|ref|YP_503038.1| - 0.054 13.1 0.3 0.46 10.1 0.3 2.1 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CobS PF02654.15 gi|88602862|ref|YP_503040.1| - 1e-36 127.1 14.9 1.2e-36 126.8 14.9 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF373 PF04123.13 gi|88602862|ref|YP_503040.1| - 0.041 13.3 1.8 0.052 13.0 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) GTP_EFTU PF00009.27 gi|88602864|ref|YP_503042.1| - 1.2e-55 188.1 0.1 1.3e-55 188.0 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|88602864|ref|YP_503042.1| - 9.3e-39 132.2 0.1 2.7e-38 130.7 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|88602864|ref|YP_503042.1| - 1e-18 67.5 0.9 3.9e-18 65.6 0.6 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|88602864|ref|YP_503042.1| - 3.4e-06 27.1 0.0 0.00011 22.3 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|88602864|ref|YP_503042.1| - 0.00023 21.0 0.6 0.00062 19.6 0.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 DUF5511 PF17630.2 gi|88602864|ref|YP_503042.1| - 0.0007 19.7 0.1 0.0021 18.2 0.1 1.8 1 0 0 1 1 1 1 Family of unknown function (DUF5511) Gtr1_RagA PF04670.12 gi|88602864|ref|YP_503042.1| - 0.026 13.9 0.0 0.06 12.7 0.0 1.6 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|88602864|ref|YP_503042.1| - 0.03 13.8 0.4 0.19 11.2 0.2 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B NTP_transf_3 PF12804.7 gi|88602864|ref|YP_503042.1| - 0.09 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain Ras PF00071.22 gi|88602864|ref|YP_503042.1| - 0.14 11.8 0.1 0.34 10.5 0.1 1.6 1 0 0 1 1 1 0 Ras family Ribosomal_S10 PF00338.22 gi|88602865|ref|YP_503043.1| - 5.7e-27 93.8 0.0 6.3e-27 93.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|88602865|ref|YP_503043.1| - 0.00046 21.0 0.1 0.001 19.8 0.0 1.6 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain TRPM_tetra PF16519.5 gi|88602865|ref|YP_503043.1| - 0.043 13.9 0.2 0.071 13.2 0.2 1.4 1 0 0 1 1 1 0 Tetramerisation domain of TRPM PMT_2 PF13231.6 gi|88602866|ref|YP_503044.1| - 1.8e-20 73.8 15.3 1.8e-20 73.8 15.3 2.4 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|88602866|ref|YP_503044.1| - 7.3e-12 45.4 10.5 7.3e-12 45.4 10.5 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF3981 PF13139.6 gi|88602866|ref|YP_503044.1| - 0.045 14.1 0.4 1.2 9.5 0.1 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) FeoB_associated PF12669.7 gi|88602867|ref|YP_503045.1| - 0.0032 17.8 2.7 0.0032 17.8 2.7 1.7 2 0 0 2 2 2 1 FeoB-associated Cys-rich membrane protein NAD_binding_2 PF03446.15 gi|88602867|ref|YP_503045.1| - 0.047 13.9 0.7 0.047 13.9 0.7 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Atu4866 PF11512.8 gi|88602867|ref|YP_503045.1| - 0.079 13.3 0.2 0.17 12.3 0.2 1.5 1 0 0 1 1 1 0 Agrobacterium tumefaciens protein Atu4866 Laminin_II PF06009.12 gi|88602867|ref|YP_503045.1| - 0.09 12.8 1.7 3 7.9 0.3 2.7 2 0 0 2 2 2 0 Laminin Domain II Com_YlbF PF06133.11 gi|88602867|ref|YP_503045.1| - 0.95 10.1 8.6 0.43 11.2 5.0 2.1 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA ATP-synt_DE PF00401.20 gi|88602867|ref|YP_503045.1| - 1.8 8.9 14.4 0.14 12.4 0.8 3.2 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF2524 PF10732.9 gi|88602867|ref|YP_503045.1| - 7.5 6.9 6.6 4.4 7.7 1.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2524) Tubulin PF00091.25 gi|88602868|ref|YP_503046.1| - 1.1e-28 100.8 0.1 2e-28 99.9 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|88602868|ref|YP_503046.1| - 3.3e-05 23.2 0.0 6.4e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Tubulin like Amino_oxidase PF01593.24 gi|88602869|ref|YP_503047.1| - 2.5e-26 93.0 0.0 8.7e-26 91.2 0.0 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|88602869|ref|YP_503047.1| - 4.6e-13 49.2 0.2 9.6e-13 48.2 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|88602869|ref|YP_503047.1| - 1.1e-10 41.7 0.0 2.9e-10 40.3 0.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FMO-like PF00743.19 gi|88602869|ref|YP_503047.1| - 0.0024 16.4 0.0 0.0032 16.0 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Thi4 PF01946.17 gi|88602869|ref|YP_503047.1| - 0.0032 16.7 0.3 0.0064 15.8 0.3 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|88602869|ref|YP_503047.1| - 0.014 14.1 0.0 0.061 12.0 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_9 PF13454.6 gi|88602869|ref|YP_503047.1| - 0.023 14.7 0.0 0.095 12.7 0.0 2.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|88602869|ref|YP_503047.1| - 0.045 13.0 0.0 0.072 12.3 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|88602869|ref|YP_503047.1| - 0.056 12.5 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Glycos_transf_2 PF00535.26 gi|88602870|ref|YP_503048.1| - 1e-26 93.8 0.0 1.3e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88602870|ref|YP_503048.1| - 1.3e-06 28.5 0.0 1.8e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|88602870|ref|YP_503048.1| - 2.3e-06 27.3 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_4_4 PF13579.6 gi|88602870|ref|YP_503048.1| - 0.00031 21.2 0.2 0.0067 16.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_tranf_2_4 PF13704.6 gi|88602870|ref|YP_503048.1| - 0.0009 19.7 0.1 0.018 15.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 BTG PF07742.12 gi|88602870|ref|YP_503048.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 BTG family LPG_synthase_TM PF03706.13 gi|88602871|ref|YP_503049.1| - 1.1e-47 163.1 30.6 1.2e-47 162.9 30.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF5313 PF17240.2 gi|88602871|ref|YP_503049.1| - 2 8.9 9.0 8.8 6.8 3.0 2.6 1 1 1 2 2 2 0 Family of unknown function (DUF5313) DUF2298 PF10060.9 gi|88602872|ref|YP_503050.1| - 3e-86 290.2 40.4 5e-86 289.4 40.4 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) DUF5513 PF17632.2 gi|88602872|ref|YP_503050.1| - 0.065 13.7 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5513) Ribosomal_L7Ae PF01248.26 gi|88602873|ref|YP_503051.1| - 1.8e-24 85.2 0.7 2.2e-24 85.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|88602873|ref|YP_503051.1| - 0.0044 16.9 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain CHASE3 PF05227.13 gi|88602873|ref|YP_503051.1| - 0.037 13.9 0.3 0.098 12.6 0.1 1.7 2 0 0 2 2 2 0 CHASE3 domain Ribosomal_S28e PF01200.18 gi|88602874|ref|YP_503052.1| - 2.3e-30 104.4 0.5 2.5e-30 104.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|88602875|ref|YP_503053.1| - 6.9e-23 80.7 1.2 7.4e-23 80.6 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e VATC PF18716.1 gi|88602875|ref|YP_503053.1| - 0.00022 21.0 4.1 0.00058 19.6 4.1 1.6 1 1 0 1 1 1 1 Vms1-associating treble clef domain zf-FCS PF06467.14 gi|88602875|ref|YP_503053.1| - 0.00044 20.1 4.3 0.00058 19.7 4.3 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.18 gi|88602875|ref|YP_503053.1| - 0.00051 20.1 0.0 0.00084 19.4 0.0 1.4 1 1 0 1 1 1 1 MYND finger YHS PF04945.13 gi|88602875|ref|YP_503053.1| - 0.011 15.8 2.6 0.014 15.4 2.6 1.1 1 0 0 1 1 1 0 YHS domain DUF3268 PF11672.8 gi|88602875|ref|YP_503053.1| - 0.042 14.2 0.3 0.042 14.2 0.3 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain Metallothio_Pro PF02069.16 gi|88602875|ref|YP_503053.1| - 0.065 13.5 2.2 0.097 12.9 2.2 1.4 1 1 0 1 1 1 0 Prokaryotic metallothionein DUF2256 PF10013.9 gi|88602875|ref|YP_503053.1| - 0.11 12.6 2.8 0.76 9.9 2.8 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) NDK PF00334.19 gi|88602876|ref|YP_503054.1| - 9.6e-54 181.0 0.0 1.1e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase TPR_1 PF00515.28 gi|88602877|ref|YP_503055.1| - 1.5e-42 141.7 9.0 6.4e-09 35.3 0.1 6.4 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602877|ref|YP_503055.1| - 1.1e-40 134.4 8.8 7.7e-08 31.9 0.1 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602877|ref|YP_503055.1| - 1e-30 103.3 11.0 9e-06 25.5 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602877|ref|YP_503055.1| - 1.3e-30 105.7 5.2 3.7e-12 46.7 0.9 3.7 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602877|ref|YP_503055.1| - 2.8e-29 100.5 13.4 3e-07 30.0 0.0 5.4 1 1 4 5 5 5 5 TPR repeat TPR_17 PF13431.6 gi|88602877|ref|YP_503055.1| - 3e-25 86.7 7.2 2.2e-05 24.5 0.0 6.1 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602877|ref|YP_503055.1| - 7.8e-24 82.3 0.3 2.3e-05 24.8 0.1 5.6 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602877|ref|YP_503055.1| - 4.8e-22 78.2 2.6 2.9e-07 30.9 0.4 3.5 2 1 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602877|ref|YP_503055.1| - 5e-18 65.2 6.0 4.1e-05 23.8 0.1 4.6 2 2 2 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88602877|ref|YP_503055.1| - 1.7e-17 63.4 2.2 2.3e-07 30.9 0.7 3.1 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88602877|ref|YP_503055.1| - 2.1e-11 43.8 0.2 0.0048 17.0 0.1 4.2 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602877|ref|YP_503055.1| - 1.5e-10 41.0 11.1 0.089 13.5 0.1 6.0 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88602877|ref|YP_503055.1| - 5.5e-09 35.4 4.4 0.5 10.5 0.0 5.7 5 1 1 6 6 5 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602877|ref|YP_503055.1| - 2.3e-07 30.1 0.3 0.0024 16.9 0.1 2.4 2 0 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|88602877|ref|YP_503055.1| - 4.2e-07 29.6 5.9 0.46 10.4 0.1 5.4 6 0 0 6 6 6 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88602877|ref|YP_503055.1| - 6.4e-07 29.3 5.0 2.2 8.4 0.1 5.1 2 1 3 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|88602877|ref|YP_503055.1| - 6.9e-07 29.2 3.1 0.092 12.8 0.4 4.9 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain TPR_3 PF07720.12 gi|88602877|ref|YP_503055.1| - 1.8e-05 24.6 7.7 0.062 13.3 0.0 5.0 5 2 0 5 5 4 1 Tetratricopeptide repeat Paf67 PF10255.9 gi|88602877|ref|YP_503055.1| - 6.9e-05 22.0 2.2 0.74 8.7 0.0 3.3 2 1 1 3 3 3 2 RNA polymerase I-associated factor PAF67 PknG_TPR PF16918.5 gi|88602877|ref|YP_503055.1| - 0.0001 21.2 0.3 0.072 11.8 0.0 2.8 1 1 2 3 3 3 1 Protein kinase G tetratricopeptide repeat TPR_4 PF07721.14 gi|88602877|ref|YP_503055.1| - 0.00011 22.4 0.0 33 5.5 0.0 4.5 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88602877|ref|YP_503055.1| - 0.00027 21.0 3.3 0.71 9.9 0.6 4.7 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|88602877|ref|YP_503055.1| - 0.00077 19.9 0.3 3.8 7.9 0.0 3.1 1 1 2 3 3 3 1 Bacterial transcriptional activator domain TPR_20 PF14561.6 gi|88602877|ref|YP_503055.1| - 0.0024 18.1 0.1 5.7 7.3 0.0 3.5 1 1 4 5 5 5 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88602877|ref|YP_503055.1| - 0.0028 18.1 0.3 0.86 10.1 0.0 3.1 2 1 1 3 3 3 1 Alkyl sulfatase dimerisation DUF3808 PF10300.9 gi|88602877|ref|YP_503055.1| - 0.0029 16.4 0.5 0.022 13.5 0.2 2.3 1 1 2 3 3 3 1 Protein of unknown function (DUF3808) YfiO PF13525.6 gi|88602877|ref|YP_503055.1| - 0.006 16.3 3.3 0.11 12.2 0.0 2.7 1 1 2 3 3 3 1 Outer membrane lipoprotein DUF1510 PF07423.11 gi|88602877|ref|YP_503055.1| - 0.021 14.9 0.9 6.7 6.9 0.1 3.5 2 1 1 4 4 4 0 Domain of unknown function (DUF1510) TPR_15 PF13429.6 gi|88602877|ref|YP_503055.1| - 0.023 13.9 2.2 0.1 11.8 1.0 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|88602877|ref|YP_503055.1| - 0.034 14.2 0.5 2.6 8.1 0.0 3.4 2 2 1 3 3 3 0 Anaphase-promoting complex subunit 5 ChAPs PF09295.10 gi|88602877|ref|YP_503055.1| - 0.036 13.1 0.0 0.17 10.8 0.0 1.9 1 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) HEPN PF05168.14 gi|88602877|ref|YP_503055.1| - 0.039 14.1 3.7 0.79 9.9 0.1 3.6 4 1 0 4 4 4 0 HEPN domain HEPN_AbiV PF18728.1 gi|88602877|ref|YP_503055.1| - 0.048 13.8 0.1 0.1 12.7 0.0 1.7 2 0 0 2 2 1 0 AbiV Coatomer_E PF04733.14 gi|88602877|ref|YP_503055.1| - 0.071 12.5 0.2 1.5 8.1 0.0 2.5 2 1 0 2 2 2 0 Coatomer epsilon subunit HTH_Bact PF18768.1 gi|88602877|ref|YP_503055.1| - 0.097 12.3 6.7 0.49 10.0 3.0 3.8 3 1 0 3 3 3 0 Helix-turn-helix bacterial domain DUF5113 PF17140.4 gi|88602877|ref|YP_503055.1| - 1.4 8.7 10.3 1.5 8.6 0.1 3.7 3 1 2 5 5 4 0 Domain of unknown function (DUF5113) TPR_1 PF00515.28 gi|88602878|ref|YP_503056.1| - 3.1e-31 105.9 6.9 6.1e-07 29.0 0.0 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88602878|ref|YP_503056.1| - 4.3e-31 104.5 3.9 8.5e-07 28.6 0.0 6.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88602878|ref|YP_503056.1| - 3e-26 89.4 1.6 2.1e-05 24.4 0.1 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88602878|ref|YP_503056.1| - 8.4e-24 82.2 0.1 9.5e-05 22.5 0.0 5.3 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88602878|ref|YP_503056.1| - 1.6e-23 82.1 1.0 5.9e-06 25.9 0.1 5.3 3 2 2 5 5 5 4 TPR repeat TPR_9 PF13371.6 gi|88602878|ref|YP_503056.1| - 3.9e-19 68.6 0.1 2.5e-05 24.4 0.0 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88602878|ref|YP_503056.1| - 6.4e-19 67.0 3.1 6.5e-05 23.4 0.1 5.6 2 2 4 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88602878|ref|YP_503056.1| - 1.2e-16 61.0 0.1 1.3e-05 25.6 0.0 4.2 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88602878|ref|YP_503056.1| - 2.9e-15 56.6 0.0 8.5e-05 23.1 0.0 3.3 2 1 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88602878|ref|YP_503056.1| - 1.9e-13 50.5 5.8 1.1e-07 32.0 0.2 4.6 2 1 1 4 4 4 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88602878|ref|YP_503056.1| - 1.3e-09 37.7 0.7 1.2e-08 34.5 0.5 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88602878|ref|YP_503056.1| - 2.1e-09 36.8 0.1 0.0002 20.4 0.0 3.0 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|88602878|ref|YP_503056.1| - 4.2e-09 36.5 5.6 2.7e-05 24.3 0.7 3.1 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|88602878|ref|YP_503056.1| - 6.5e-09 35.2 0.4 1.7 8.9 0.0 5.5 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88602878|ref|YP_503056.1| - 3.7e-06 27.2 4.4 0.16 12.7 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88602878|ref|YP_503056.1| - 9.2e-06 25.8 2.2 0.69 10.0 0.0 4.9 1 1 2 4 4 4 2 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|88602878|ref|YP_503056.1| - 2.9e-05 24.5 0.3 0.17 12.3 0.0 2.9 1 1 3 4 4 4 2 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|88602878|ref|YP_503056.1| - 0.00021 21.3 0.1 0.012 15.6 0.1 2.4 1 1 1 2 2 2 1 Putative TPR-like repeat TPR_10 PF13374.6 gi|88602878|ref|YP_503056.1| - 0.00057 19.7 12.1 0.017 15.0 0.2 4.6 6 1 1 7 7 7 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|88602878|ref|YP_503056.1| - 0.00087 18.8 0.1 0.85 8.9 0.0 3.1 3 0 0 3 3 3 1 MalT-like TPR region Fis1_TPR_C PF14853.6 gi|88602878|ref|YP_503056.1| - 0.0026 17.8 1.3 0.044 13.9 0.0 3.1 5 0 0 5 5 3 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88602878|ref|YP_503056.1| - 0.0067 16.9 0.0 3.3 8.2 0.0 2.7 1 1 1 3 3 3 1 Alkyl sulfatase dimerisation MIT PF04212.18 gi|88602878|ref|YP_503056.1| - 0.021 14.9 2.6 7.1 6.8 0.1 3.6 3 1 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_21 PF09976.9 gi|88602878|ref|YP_503056.1| - 0.021 14.5 0.7 4 7.1 0.0 3.5 2 1 1 3 3 3 0 Tetratricopeptide repeat-like domain ANAPC5 PF12862.7 gi|88602878|ref|YP_503056.1| - 0.069 13.2 0.2 8.6 6.5 0.0 3.0 4 0 0 4 4 2 0 Anaphase-promoting complex subunit 5 SHNi-TPR PF10516.9 gi|88602878|ref|YP_503056.1| - 0.66 9.5 4.6 22 4.6 0.2 3.8 5 0 0 5 5 5 0 SHNi-TPR Autophagy_C PF10381.9 gi|88602878|ref|YP_503056.1| - 0.74 9.4 1.8 1.4 8.5 1.8 1.5 1 0 0 1 1 1 0 Autophagocytosis associated protein C-terminal DUF5113 PF17140.4 gi|88602878|ref|YP_503056.1| - 7.9 6.3 7.2 1.3 8.8 0.0 3.0 4 1 0 4 4 3 0 Domain of unknown function (DUF5113) Response_reg PF00072.24 gi|88602879|ref|YP_503057.1| - 2.9e-24 85.4 0.0 4e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|88602879|ref|YP_503057.1| - 0.0084 16.4 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain CbiQ PF02361.16 gi|88602880|ref|YP_503058.1| - 3.8e-31 108.4 8.0 3.8e-31 108.4 8.0 1.4 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|88602881|ref|YP_503059.1| - 9.6e-54 181.6 0.0 7.4e-28 97.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|88602881|ref|YP_503059.1| - 1.3e-25 90.9 1.0 8.4e-08 32.4 0.1 4.1 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88602881|ref|YP_503059.1| - 5.6e-16 58.6 0.6 9.5e-06 25.2 0.0 3.4 2 2 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88602881|ref|YP_503059.1| - 1.7e-10 41.8 0.1 7.1e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|88602881|ref|YP_503059.1| - 7.2e-09 36.3 0.1 0.0016 18.8 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|88602881|ref|YP_503059.1| - 1.7e-07 30.9 0.4 0.0048 16.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|88602881|ref|YP_503059.1| - 1e-06 29.0 1.7 0.012 15.9 0.0 3.6 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|88602881|ref|YP_503059.1| - 1.2e-06 29.1 0.7 0.027 15.0 0.2 3.0 3 1 0 3 3 2 2 AAA domain AAA PF00004.29 gi|88602881|ref|YP_503059.1| - 2.4e-06 28.0 0.7 0.026 15.0 0.0 4.0 2 2 2 4 4 4 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|88602881|ref|YP_503059.1| - 1e-05 25.7 2.6 0.14 12.4 0.1 4.0 3 2 0 3 3 2 2 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|88602881|ref|YP_503059.1| - 1.2e-05 25.1 0.9 0.031 14.0 0.0 3.0 2 2 0 2 2 2 2 AAA domain ATP_bind_1 PF03029.17 gi|88602881|ref|YP_503059.1| - 1.5e-05 24.9 0.3 0.059 13.1 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|88602881|ref|YP_503059.1| - 5.3e-05 23.2 4.4 1.1 9.1 0.1 4.0 4 0 0 4 4 4 2 NTPase T2SSE PF00437.20 gi|88602881|ref|YP_503059.1| - 5.8e-05 22.3 2.8 0.00073 18.7 0.1 2.7 3 0 0 3 3 2 1 Type II/IV secretion system protein AAA_24 PF13479.6 gi|88602881|ref|YP_503059.1| - 6.8e-05 22.7 0.7 0.14 11.8 0.0 3.7 4 0 0 4 4 4 1 AAA domain PduV-EutP PF10662.9 gi|88602881|ref|YP_503059.1| - 8.5e-05 22.3 0.3 0.63 9.8 0.0 2.9 3 0 0 3 3 2 2 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|88602881|ref|YP_503059.1| - 0.0001 22.2 0.0 0.16 11.6 0.0 3.7 4 0 0 4 4 4 1 AAA ATPase domain DLIC PF05783.11 gi|88602881|ref|YP_503059.1| - 0.00011 21.2 0.2 0.052 12.4 0.0 2.2 2 0 0 2 2 2 2 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 gi|88602881|ref|YP_503059.1| - 0.00012 22.4 0.6 0.31 11.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain TsaE PF02367.17 gi|88602881|ref|YP_503059.1| - 0.00021 21.3 0.4 0.46 10.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|88602881|ref|YP_503059.1| - 0.00033 20.4 4.7 7.5 6.2 0.1 4.1 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|88602881|ref|YP_503059.1| - 0.00035 19.4 0.0 0.7 8.5 0.0 3.6 4 0 0 4 4 4 1 AAA domain AAA_25 PF13481.6 gi|88602881|ref|YP_503059.1| - 0.00041 20.0 5.3 0.07 12.7 0.1 3.4 4 1 0 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|88602881|ref|YP_503059.1| - 0.00069 19.8 0.9 0.69 10.1 0.0 3.2 3 1 0 3 3 2 1 AAA domain Mg_chelatase PF01078.21 gi|88602881|ref|YP_503059.1| - 0.00078 18.9 0.6 0.98 8.8 0.0 2.9 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|88602881|ref|YP_503059.1| - 0.00087 19.0 0.1 0.16 11.6 0.0 2.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|88602881|ref|YP_503059.1| - 0.00093 18.8 0.2 0.82 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|88602881|ref|YP_503059.1| - 0.0012 18.8 0.2 0.016 15.1 0.0 2.3 2 0 0 2 2 2 1 NACHT domain ATPase PF06745.13 gi|88602881|ref|YP_503059.1| - 0.002 17.5 2.6 0.31 10.3 0.0 3.3 4 0 0 4 4 4 1 KaiC ATPase_2 PF01637.18 gi|88602881|ref|YP_503059.1| - 0.0026 17.7 0.2 2.1 8.2 0.0 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|88602881|ref|YP_503059.1| - 0.0032 17.4 0.2 0.49 10.3 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase RNA_helicase PF00910.22 gi|88602881|ref|YP_503059.1| - 0.004 17.5 0.0 3.6 8.0 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|88602881|ref|YP_503059.1| - 0.0046 16.5 0.1 1.2 8.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|88602881|ref|YP_503059.1| - 0.0047 17.0 0.0 6.1 7.0 0.0 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|88602881|ref|YP_503059.1| - 0.005 16.9 0.1 3.7 7.6 0.0 2.9 3 0 0 3 3 2 0 AAA domain APS_kinase PF01583.20 gi|88602881|ref|YP_503059.1| - 0.011 15.7 0.1 1.6 8.6 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase MobB PF03205.14 gi|88602881|ref|YP_503059.1| - 0.019 14.9 0.4 0.65 9.9 0.0 3.0 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|88602881|ref|YP_503059.1| - 0.021 14.4 0.3 1.3 8.6 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|88602881|ref|YP_503059.1| - 0.024 13.9 0.1 4.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.10 gi|88602881|ref|YP_503059.1| - 0.025 14.0 0.0 3.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cytidylate_kin PF02224.18 gi|88602881|ref|YP_503059.1| - 0.034 13.9 0.0 0.36 10.5 0.0 2.2 2 0 0 2 2 2 0 Cytidylate kinase Roc PF08477.13 gi|88602881|ref|YP_503059.1| - 0.034 14.4 0.1 1.6 9.0 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_5 PF07728.14 gi|88602881|ref|YP_503059.1| - 0.035 14.1 0.1 0.29 11.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|88602881|ref|YP_503059.1| - 0.059 13.0 0.4 4.1 7.0 0.1 2.8 3 1 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_ATPase PF09818.9 gi|88602881|ref|YP_503059.1| - 0.062 12.1 14.5 0.22 10.2 0.7 4.2 4 1 0 4 4 4 0 Predicted ATPase of the ABC class dNK PF01712.19 gi|88602881|ref|YP_503059.1| - 0.074 12.9 0.1 9.8 6.0 0.0 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase NB-ARC PF00931.22 gi|88602881|ref|YP_503059.1| - 0.09 11.9 0.3 0.95 8.6 0.1 2.5 3 0 0 3 3 3 0 NB-ARC domain DP-EP PF08985.11 gi|88602881|ref|YP_503059.1| - 0.097 12.8 0.2 8.8 6.5 0.0 2.6 3 0 0 3 3 2 0 DP-EP family PRK PF00485.18 gi|88602881|ref|YP_503059.1| - 0.1 12.3 0.2 4.2 7.0 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|88602881|ref|YP_503059.1| - 0.13 12.2 0.1 6.6 6.6 0.0 2.7 3 0 0 3 3 2 0 Rad17 P-loop domain AAA_19 PF13245.6 gi|88602881|ref|YP_503059.1| - 0.29 11.5 3.3 3.1 8.1 0.0 3.3 4 0 0 4 4 4 0 AAA domain DEAD PF00270.29 gi|88602881|ref|YP_503059.1| - 0.94 9.2 2.4 16 5.2 0.6 3.1 3 1 0 3 3 3 0 DEAD/DEAH box helicase TrpP PF17099.5 gi|88602882|ref|YP_503060.1| - 1.5e-08 34.6 22.9 1.3e-07 31.6 22.9 2.0 1 1 0 1 1 1 1 Tryptophan transporter TrpP CxxCxxCC PF03692.15 gi|88602883|ref|YP_503061.1| - 3.2e-09 37.4 1.1 8e-09 36.1 1.2 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain PPK2 PF03976.14 gi|88602884|ref|YP_503062.1| - 2.6e-130 432.8 6.7 7.5e-85 284.0 3.4 2.3 2 1 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|88602884|ref|YP_503062.1| - 0.033 14.7 4.0 0.35 11.4 0.6 3.7 2 2 1 3 3 3 0 AAA domain MetOD2 PF18548.1 gi|88602885|ref|YP_503063.1| - 1.1e-25 89.6 0.1 1.7e-25 89.0 0.1 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|88602885|ref|YP_503063.1| - 1.7e-18 66.8 0.8 2.6e-18 66.2 0.8 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Band_7 PF01145.25 gi|88602886|ref|YP_503064.1| - 6.5e-35 120.7 2.7 1.1e-34 120.1 2.7 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|88602886|ref|YP_503064.1| - 0.054 13.2 0.1 0.089 12.5 0.1 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family NfeD PF01957.18 gi|88602887|ref|YP_503065.1| - 4.4e-14 52.6 0.3 4.4e-14 52.6 0.3 1.9 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding ECF_trnsprt PF12822.7 gi|88602887|ref|YP_503065.1| - 0.34 11.0 13.3 0.48 10.5 13.3 1.1 1 0 0 1 1 1 0 ECF transporter, substrate-specific component CopD PF05425.13 gi|88602887|ref|YP_503065.1| - 0.63 10.5 7.0 0.66 10.4 5.8 1.6 1 1 1 2 2 2 0 Copper resistance protein D DUF4131 PF13567.6 gi|88602887|ref|YP_503065.1| - 2.2 7.9 5.7 6.3 6.4 5.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF89 PF01937.19 gi|88602888|ref|YP_503066.1| - 3.6e-55 187.3 0.0 4.1e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Robl_LC7 PF03259.17 gi|88602889|ref|YP_503067.1| - 1.7e-09 37.3 0.3 2.3e-09 36.9 0.3 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MetOD2 PF18548.1 gi|88602890|ref|YP_503068.1| - 2.1e-32 111.1 0.6 3.1e-32 110.5 0.6 1.3 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|88602890|ref|YP_503068.1| - 4.2e-23 81.6 0.1 6.8e-23 81.0 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Ribosomal_L50 PF10501.9 gi|88602890|ref|YP_503068.1| - 0.046 13.9 0.1 1.9 8.7 0.0 2.2 1 1 1 2 2 2 0 Ribosomal subunit 39S PALP PF00291.25 gi|88602891|ref|YP_503069.1| - 2.9e-74 250.1 2.3 3.4e-74 249.9 2.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Prok-E2_C PF14459.6 gi|88602891|ref|YP_503069.1| - 0.0052 16.9 0.1 0.011 15.9 0.1 1.5 1 0 0 1 1 1 1 Prokaryotic E2 family C PK_C PF02887.16 gi|88602891|ref|YP_503069.1| - 0.0053 17.0 0.4 0.36 11.1 0.0 2.3 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain A2L_zn_ribbon PF08792.10 gi|88602891|ref|YP_503069.1| - 0.2 11.4 5.8 1.7 8.5 0.2 2.7 3 0 0 3 3 3 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|88602891|ref|YP_503069.1| - 0.42 10.4 2.4 0.62 9.8 0.9 2.0 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|88602891|ref|YP_503069.1| - 0.83 9.2 3.0 7.2 6.2 3.0 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|88602891|ref|YP_503069.1| - 1.1 9.3 2.6 3.6 7.7 2.6 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid AdoMet_dc PF02675.15 gi|88602893|ref|YP_503071.1| - 2.5e-21 75.9 0.0 3.1e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF5343 PF17278.2 gi|88602893|ref|YP_503071.1| - 0.12 12.4 0.0 0.48 10.5 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5343) DJ-1_PfpI PF01965.24 gi|88602894|ref|YP_503072.1| - 1.9e-32 112.3 0.0 2.1e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ACT PF01842.25 gi|88602895|ref|YP_503073.1| - 2.2e-14 52.9 0.0 8e-07 28.7 0.0 2.5 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|88602895|ref|YP_503073.1| - 3.1e-09 36.5 0.1 0.00015 21.5 0.0 2.4 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|88602895|ref|YP_503073.1| - 2.6e-08 34.3 0.0 0.01 16.4 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|88602895|ref|YP_503073.1| - 0.00068 19.6 0.0 0.098 12.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain TRM PF02005.16 gi|88602895|ref|YP_503073.1| - 0.093 11.9 0.0 0.14 11.3 0.0 1.3 1 1 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase AMP-binding_C_2 PF14535.6 gi|88602896|ref|YP_503074.1| - 2.6e-32 111.0 0.1 1.7e-31 108.4 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|88602896|ref|YP_503074.1| - 1.1e-16 60.5 0.1 2.5e-16 59.3 0.0 1.5 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|88602896|ref|YP_503074.1| - 0.0066 15.5 0.0 0.14 11.2 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE AMP-binding_C_2 PF14535.6 gi|88602897|ref|YP_503075.1| - 1.6e-31 108.4 0.4 4.7e-31 107.0 0.3 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|88602897|ref|YP_503075.1| - 1.6e-23 83.0 0.7 3.1e-22 78.7 0.7 2.0 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|88602897|ref|YP_503075.1| - 0.0018 17.2 0.0 0.71 8.7 0.0 2.4 2 1 0 2 2 2 2 GH3 auxin-responsive promoter SEC-C PF02810.15 gi|88602897|ref|YP_503075.1| - 0.057 13.3 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 SEC-C motif FMN_red PF03358.15 gi|88602898|ref|YP_503076.1| - 4.7e-28 97.9 0.0 6e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88602898|ref|YP_503076.1| - 6e-09 35.9 0.0 1e-08 35.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Flagellin_IN PF07196.13 gi|88602898|ref|YP_503076.1| - 0.3 11.3 0.2 0.3 11.3 0.2 1.7 2 0 0 2 2 2 0 Flagellin hook IN motif AMP-binding PF00501.28 gi|88602899|ref|YP_503077.1| - 7e-108 360.9 0.0 8.3e-108 360.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88602899|ref|YP_503077.1| - 3.3e-18 66.4 0.0 1.3e-17 64.5 0.0 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|88602899|ref|YP_503077.1| - 0.00053 20.3 0.0 0.0014 18.9 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fae PF08714.11 gi|88602900|ref|YP_503078.1| - 2.7e-67 225.7 1.3 5.2e-67 224.7 0.1 1.9 2 0 0 2 2 2 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|88602900|ref|YP_503078.1| - 1.4e-21 77.2 2.3 5.4e-21 75.2 2.3 1.9 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.17 gi|88602900|ref|YP_503078.1| - 0.033 13.6 2.0 2.9 7.3 0.1 2.3 2 0 0 2 2 2 0 PcrB family Ribul_P_3_epim PF00834.19 gi|88602900|ref|YP_503078.1| - 0.042 13.2 1.0 0.14 11.6 1.0 2.0 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|88602900|ref|YP_503078.1| - 0.053 13.3 0.6 0.1 12.3 0.6 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Ribosomal_S5 PF00333.20 gi|88602900|ref|YP_503078.1| - 7.1 6.7 6.4 4.5 7.3 0.0 3.3 4 0 0 4 4 4 0 Ribosomal protein S5, N-terminal domain AAA_35 PF14516.6 gi|88602901|ref|YP_503079.1| - 1.2e-10 40.8 0.0 2.6e-10 39.7 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 gi|88602901|ref|YP_503079.1| - 2.8e-07 30.9 0.0 9e-06 26.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88602901|ref|YP_503079.1| - 0.00018 21.9 0.7 0.0021 18.5 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|88602901|ref|YP_503079.1| - 0.0015 19.0 0.0 0.047 14.1 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|88602901|ref|YP_503079.1| - 0.008 16.2 0.0 0.062 13.3 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA-ATPase_like PF09820.9 gi|88602901|ref|YP_503079.1| - 0.02 14.3 0.0 0.069 12.6 0.0 1.9 1 1 0 1 1 1 0 Predicted AAA-ATPase ATPase_2 PF01637.18 gi|88602901|ref|YP_503079.1| - 0.026 14.4 0.0 0.12 12.2 0.0 2.2 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PDDEXK_3 PF13366.6 gi|88602901|ref|YP_503079.1| - 0.042 14.2 0.0 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily PemK_toxin PF02452.17 gi|88602902|ref|YP_503080.1| - 4.3e-24 85.1 0.2 4.6e-24 84.9 0.2 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system Peptidase_M23_N PF18421.1 gi|88602902|ref|YP_503080.1| - 0.11 12.4 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Peptidase family M23 N-terminal domain DUF4013 PF13197.6 gi|88602904|ref|YP_503082.1| - 5.2e-32 111.0 35.8 8.2e-32 110.4 35.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF4112 PF13430.6 gi|88602904|ref|YP_503082.1| - 0.041 14.2 3.1 0.041 14.2 3.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4112) Sugar_tr PF00083.24 gi|88602905|ref|YP_503083.1| - 2.7e-59 201.2 23.2 3.2e-59 201.0 23.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|88602905|ref|YP_503083.1| - 8.7e-39 133.4 54.6 8.6e-36 123.6 31.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|88602905|ref|YP_503083.1| - 5.7e-06 25.9 9.5 5.7e-06 25.9 9.5 2.5 2 1 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_3 PF05977.13 gi|88602905|ref|YP_503083.1| - 6e-06 24.9 2.9 6e-06 24.9 2.9 1.9 2 0 0 2 2 2 1 Transmembrane secretion effector TRI12 PF06609.13 gi|88602905|ref|YP_503083.1| - 0.002 16.6 2.2 0.002 16.6 2.2 1.8 2 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|88602905|ref|YP_503083.1| - 0.21 9.8 10.0 1.1 7.5 2.1 2.8 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|88602905|ref|YP_503083.1| - 1.5 7.6 16.0 0.033 13.0 5.1 2.4 2 0 0 2 2 2 0 MFS_1 like family Spore_YtfJ PF09579.10 gi|88602906|ref|YP_503084.1| - 1.7e-14 53.7 1.2 2.3e-14 53.3 1.2 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) RimK PF08443.11 gi|88602906|ref|YP_503084.1| - 0.12 12.0 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DUF2953 PF11167.8 gi|88602907|ref|YP_503085.1| - 1.6e-12 47.3 0.0 2.8e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) DZR PF12773.7 gi|88602909|ref|YP_503087.1| - 0.00015 21.7 0.8 0.00017 21.6 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Arc PF03869.14 gi|88602909|ref|YP_503087.1| - 0.017 15.0 0.1 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 Arc-like DNA binding domain zinc_ribbon_2 PF13240.6 gi|88602909|ref|YP_503087.1| - 0.041 13.6 4.2 0.075 12.8 4.2 1.5 1 1 0 1 1 1 0 zinc-ribbon domain FMN_red PF03358.15 gi|88602910|ref|YP_503088.1| - 9.5e-27 93.6 0.1 7.7e-26 90.7 0.0 1.9 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88602910|ref|YP_503088.1| - 5.6e-08 32.7 0.0 7.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|88602910|ref|YP_503088.1| - 0.029 14.1 0.8 0.077 12.7 0.2 1.8 2 0 0 2 2 2 0 Predicted metal-binding protein (DUF2284) Flavodoxin_5 PF12724.7 gi|88602910|ref|YP_503088.1| - 0.094 12.9 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin domain P-II PF00543.22 gi|88602912|ref|YP_503090.1| - 1.7e-24 86.4 0.5 1.9e-24 86.2 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Nit_Regul_Hom PF10126.9 gi|88602912|ref|YP_503090.1| - 0.0017 18.4 0.4 0.1 12.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII LPD14 PF18827.1 gi|88602912|ref|YP_503090.1| - 0.013 15.7 0.4 0.017 15.3 0.4 1.4 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 14 TehB PF03848.14 gi|88602912|ref|YP_503090.1| - 0.029 13.8 0.2 0.038 13.4 0.2 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TehB MCPsignal PF00015.21 gi|88602913|ref|YP_503091.1| - 7e-45 152.9 62.2 6.2e-42 143.3 21.1 5.7 3 1 3 6 6 5 4 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|88602913|ref|YP_503091.1| - 1.1e-23 83.6 0.0 8.2e-07 29.3 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|88602913|ref|YP_503091.1| - 2.3e-22 79.2 0.0 9.4e-07 29.0 0.0 4.7 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|88602913|ref|YP_503091.1| - 2.3e-18 66.2 0.0 4.4e-06 26.7 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|88602913|ref|YP_503091.1| - 1.2e-13 50.7 0.0 0.00076 19.5 0.0 4.1 4 0 0 4 4 4 3 PAS domain DUF1664 PF07889.12 gi|88602913|ref|YP_503091.1| - 0.00058 19.9 36.7 0.039 14.0 2.8 6.2 4 2 2 6 6 6 2 Protein of unknown function (DUF1664) DUF4200 PF13863.6 gi|88602913|ref|YP_503091.1| - 0.022 15.2 4.6 4.8 7.6 0.0 4.3 4 1 0 4 4 4 0 Domain of unknown function (DUF4200) PAS_7 PF12860.7 gi|88602913|ref|YP_503091.1| - 0.077 13.2 4.8 3.2 7.9 0.0 4.8 4 2 2 6 6 6 0 PAS fold Ferritin PF00210.24 gi|88602913|ref|YP_503091.1| - 0.16 11.9 3.6 0.2 11.6 0.5 2.8 2 0 0 2 2 2 0 Ferritin-like domain AIP3 PF03915.13 gi|88602913|ref|YP_503091.1| - 0.22 10.6 25.3 0.062 12.4 18.1 2.3 1 1 0 2 2 2 0 Actin interacting protein 3 ATG16 PF08614.11 gi|88602913|ref|YP_503091.1| - 0.23 11.7 20.7 0.86 9.8 4.0 3.8 3 1 1 4 4 4 0 Autophagy protein 16 (ATG16) DUF5082 PF16888.5 gi|88602913|ref|YP_503091.1| - 0.27 11.5 15.9 0.45 10.8 0.0 5.1 3 1 2 5 5 5 0 Domain of unknown function (DUF5082) Erf4 PF10256.9 gi|88602913|ref|YP_503091.1| - 0.35 11.0 4.9 25 5.0 0.0 4.3 4 1 0 4 4 4 0 Golgin subfamily A member 7/ERF4 family Goodbye PF17109.5 gi|88602913|ref|YP_503091.1| - 1.8 9.0 13.5 2.1 8.8 0.5 4.9 3 3 1 4 4 4 0 fungal STAND N-terminal Goodbye domain Ssu72 PF04722.13 gi|88602913|ref|YP_503091.1| - 2.4 7.7 9.4 25 4.4 0.2 3.5 1 1 1 2 2 2 0 Ssu72-like protein Spc7 PF08317.11 gi|88602913|ref|YP_503091.1| - 2.8 6.7 22.8 0.49 9.2 3.9 3.3 2 1 0 3 3 3 0 Spc7 kinetochore protein DASH_Dad2 PF08654.10 gi|88602913|ref|YP_503091.1| - 3 8.3 20.5 1 9.8 3.5 4.9 3 2 1 4 4 4 0 DASH complex subunit Dad2 Prefoldin PF02996.17 gi|88602913|ref|YP_503091.1| - 4.4 7.3 22.6 0.089 12.7 0.3 5.3 6 1 0 6 6 6 0 Prefoldin subunit YkyA PF10368.9 gi|88602913|ref|YP_503091.1| - 4.8 6.8 29.2 0.12 12.0 0.2 4.8 4 1 1 5 5 5 0 Putative cell-wall binding lipoprotein BLOC1_2 PF10046.9 gi|88602913|ref|YP_503091.1| - 7.1 7.0 32.6 5.4 7.4 0.8 6.6 6 2 1 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|88602913|ref|YP_503091.1| - 7.4 6.9 39.0 0.55 10.5 0.7 6.4 4 3 2 6 6 6 0 Bacterial protein of unknown function (DUF948) CheW PF01584.19 gi|88602914|ref|YP_503092.1| - 4.4e-18 65.2 0.1 4.7e-18 65.2 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 gi|88602915|ref|YP_503093.1| - 2.3e-22 79.3 0.0 3.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain TyeA PF09059.10 gi|88602915|ref|YP_503093.1| - 0.03 14.4 0.0 0.37 10.9 0.0 2.3 2 1 0 2 2 2 0 TyeA HTH_5 PF01022.20 gi|88602916|ref|YP_503094.1| - 6.7e-13 48.3 0.1 1.2e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|88602916|ref|YP_503094.1| - 5.2e-09 36.0 0.0 9.1e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|88602916|ref|YP_503094.1| - 6.7e-08 32.0 0.1 2e-07 30.4 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|88602916|ref|YP_503094.1| - 7.3e-08 32.2 0.1 1.4e-07 31.3 0.1 1.5 1 0 0 1 1 1 1 MarR family Flavodoxin_4 PF12682.7 gi|88602916|ref|YP_503094.1| - 5.6e-07 29.4 0.1 2.5e-06 27.3 0.2 2.0 2 1 0 2 2 2 1 Flavodoxin MarR_2 PF12802.7 gi|88602916|ref|YP_503094.1| - 5.9e-07 29.3 0.1 1.4e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 MarR family Flavodoxin_5 PF12724.7 gi|88602916|ref|YP_503094.1| - 6.4e-06 26.5 0.0 0.0082 16.4 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin domain Fe_dep_repress PF01325.19 gi|88602916|ref|YP_503094.1| - 7.3e-06 26.1 0.0 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Flavodoxin_3 PF12641.7 gi|88602916|ref|YP_503094.1| - 1.1e-05 25.2 0.0 0.099 12.3 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin domain HTH_IclR PF09339.10 gi|88602916|ref|YP_503094.1| - 1.1e-05 25.1 0.1 1.9e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|88602916|ref|YP_503094.1| - 1.8e-05 24.6 0.0 4.6e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|88602916|ref|YP_503094.1| - 3.8e-05 23.5 0.1 8.5e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|88602916|ref|YP_503094.1| - 5.4e-05 23.5 0.0 9.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|88602916|ref|YP_503094.1| - 6.3e-05 22.8 0.0 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.27 gi|88602916|ref|YP_503094.1| - 7.2e-05 22.7 0.0 0.0019 18.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|88602916|ref|YP_503094.1| - 0.0011 18.4 0.0 0.0028 17.2 0.0 1.7 1 0 0 1 1 1 1 CodY helix-turn-helix domain GntR PF00392.21 gi|88602916|ref|YP_503094.1| - 0.0013 18.3 0.1 0.0045 16.6 0.0 2.0 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|88602916|ref|YP_503094.1| - 0.0023 17.7 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|88602916|ref|YP_503094.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|88602916|ref|YP_503094.1| - 0.015 15.4 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|88602916|ref|YP_503094.1| - 0.031 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT FMN_red PF03358.15 gi|88602916|ref|YP_503094.1| - 0.05 13.3 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 NADPH-dependent FMN reductase HTH_23 PF13384.6 gi|88602916|ref|YP_503094.1| - 0.057 13.2 0.0 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HxlR PF01638.17 gi|88602916|ref|YP_503094.1| - 0.069 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix P22_Cro PF14549.6 gi|88602916|ref|YP_503094.1| - 0.078 12.8 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro LexA_DNA_bind PF01726.16 gi|88602916|ref|YP_503094.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF4423 PF14394.6 gi|88602916|ref|YP_503094.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FMN_red PF03358.15 gi|88602917|ref|YP_503095.1| - 5.6e-07 29.4 0.0 6.1e-07 29.3 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Radical_SAM PF04055.21 gi|88602918|ref|YP_503096.1| - 5.1e-12 46.5 0.1 1.6e-11 44.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88602918|ref|YP_503096.1| - 7.5e-08 32.5 0.0 1.7e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88602918|ref|YP_503096.1| - 3.5e-07 30.6 0.0 7.8e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|88602918|ref|YP_503096.1| - 0.038 14.5 0.0 0.12 12.9 0.0 1.9 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain RPA_interact_N PF14766.6 gi|88602918|ref|YP_503096.1| - 0.071 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Replication protein A interacting N-terminal PAS PF00989.25 gi|88602919|ref|YP_503097.1| - 3.4e-25 88.2 0.0 4.6e-11 42.7 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88602919|ref|YP_503097.1| - 4.6e-20 71.8 0.1 2e-07 31.2 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|88602919|ref|YP_503097.1| - 4.2e-16 59.0 0.0 5.5e-13 49.0 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88602919|ref|YP_503097.1| - 9e-16 57.5 0.0 4.1e-06 26.7 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|88602919|ref|YP_503097.1| - 6.5e-15 55.3 0.0 2.5e-06 27.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|88602919|ref|YP_503097.1| - 4.1e-06 27.3 0.1 7.7e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88602919|ref|YP_503097.1| - 0.003 17.3 0.0 0.011 15.5 0.0 2.0 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|88602919|ref|YP_503097.1| - 0.0082 15.7 0.1 0.027 14.0 0.1 1.8 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|88602919|ref|YP_503097.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MCPsignal PF00015.21 gi|88602920|ref|YP_503098.1| - 4.9e-31 107.9 10.8 4.9e-31 107.9 10.8 4.1 2 1 3 5 5 5 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|88602920|ref|YP_503098.1| - 5.5e-06 26.6 0.0 3.8e-05 23.9 0.0 2.3 2 0 0 2 2 2 1 PAS fold DUF1664 PF07889.12 gi|88602920|ref|YP_503098.1| - 0.0097 15.9 11.6 0.73 9.9 1.3 5.1 4 1 0 5 5 5 1 Protein of unknown function (DUF1664) PAS_9 PF13426.7 gi|88602920|ref|YP_503098.1| - 0.01 16.0 0.0 0.036 14.3 0.0 2.0 1 0 0 1 1 1 0 PAS domain PAS PF00989.25 gi|88602920|ref|YP_503098.1| - 0.013 15.5 0.0 0.049 13.6 0.0 2.0 1 0 0 1 1 1 0 PAS fold DUF948 PF06103.11 gi|88602920|ref|YP_503098.1| - 0.013 15.7 10.9 14 6.0 0.1 6.1 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) PAS_8 PF13188.7 gi|88602920|ref|YP_503098.1| - 0.015 15.3 0.0 0.092 12.8 0.0 2.3 2 0 0 2 2 2 0 PAS domain HAMP_N3 PF18575.1 gi|88602920|ref|YP_503098.1| - 0.018 14.6 0.4 19 5.0 0.0 4.3 4 0 0 4 4 4 0 HAMP N-terminal domain 3 Fib_alpha PF08702.10 gi|88602920|ref|YP_503098.1| - 0.021 15.0 8.2 0.11 12.6 0.8 3.5 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family TFR_dimer PF04253.15 gi|88602920|ref|YP_503098.1| - 0.042 14.0 0.3 0.31 11.1 0.1 2.6 2 0 0 2 2 2 0 Transferrin receptor-like dimerisation domain CorA PF01544.18 gi|88602920|ref|YP_503098.1| - 0.23 10.8 2.8 7.1 5.9 0.0 3.4 2 2 2 4 4 4 0 CorA-like Mg2+ transporter protein Sec8_exocyst PF04048.14 gi|88602920|ref|YP_503098.1| - 0.25 11.2 1.5 6.7 6.6 0.3 2.7 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Sec34 PF04136.15 gi|88602920|ref|YP_503098.1| - 0.34 10.8 3.7 24 4.8 0.2 3.2 2 1 0 2 2 2 0 Sec34-like family HAMP PF00672.25 gi|88602920|ref|YP_503098.1| - 0.45 10.9 5.8 22 5.5 0.0 5.9 7 1 1 8 8 7 0 HAMP domain COG2 PF06148.11 gi|88602920|ref|YP_503098.1| - 0.68 10.0 9.4 4.7 7.3 0.2 4.3 5 1 0 5 5 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3450 PF11932.8 gi|88602920|ref|YP_503098.1| - 0.75 9.0 8.5 6.6 6.0 0.3 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF3450) Vps53_N PF04100.12 gi|88602920|ref|YP_503098.1| - 0.96 8.3 5.9 0.56 9.1 0.1 2.7 3 0 0 3 3 3 0 Vps53-like, N-terminal TPR_MLP1_2 PF07926.12 gi|88602920|ref|YP_503098.1| - 1.4 9.0 6.8 2.3 8.3 1.1 3.0 2 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein KELK PF15796.5 gi|88602920|ref|YP_503098.1| - 1.7 9.2 3.8 4.7 7.7 0.1 3.0 3 1 0 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Spc7 PF08317.11 gi|88602920|ref|YP_503098.1| - 1.8 7.4 8.0 2.2 7.1 0.7 2.5 2 1 1 3 3 3 0 Spc7 kinetochore protein Laminin_I PF06008.14 gi|88602920|ref|YP_503098.1| - 1.9 8.1 8.6 1.1 8.9 1.0 3.1 1 1 1 3 3 3 0 Laminin Domain I DASH_Dad2 PF08654.10 gi|88602920|ref|YP_503098.1| - 4.6 7.7 7.2 13 6.3 1.8 3.6 3 1 0 3 3 3 0 DASH complex subunit Dad2 Laminin_II PF06009.12 gi|88602920|ref|YP_503098.1| - 5.9 6.9 12.7 2.4 8.2 1.5 3.7 2 1 2 4 4 4 0 Laminin Domain II DASH_Duo1 PF08651.10 gi|88602920|ref|YP_503098.1| - 9 6.1 11.6 34 4.3 0.1 5.1 5 1 1 6 6 6 0 DASH complex subunit Duo1 Plk4_PB2 PF18409.1 gi|88602920|ref|YP_503098.1| - 9.8 6.9 8.9 5.5 7.7 0.1 3.9 3 2 2 5 5 4 0 Polo-like Kinase 4 Polo Box 2 Response_reg PF00072.24 gi|88602921|ref|YP_503099.1| - 2.1e-20 73.0 0.0 7.5e-20 71.2 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88602921|ref|YP_503099.1| - 1.2e-09 38.6 0.2 4.3e-09 36.9 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|88602921|ref|YP_503099.1| - 0.037 14.3 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_3 PF13589.6 gi|88602921|ref|YP_503099.1| - 0.048 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|88602923|ref|YP_503101.1| - 4.8e-12 46.1 0.1 1.1e-11 44.9 0.1 1.7 2 0 0 2 2 2 1 HAMP domain sCache_3_3 PF17202.4 gi|88602923|ref|YP_503101.1| - 0.0021 18.5 0.1 0.0068 16.8 0.1 1.9 1 0 0 1 1 1 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|88602923|ref|YP_503101.1| - 0.012 15.0 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain sCache_3_2 PF17203.4 gi|88602923|ref|YP_503101.1| - 0.027 14.6 0.2 0.044 13.9 0.2 1.6 1 1 0 1 1 1 0 Single cache domain 3 Orthoreo_P10 PF07204.11 gi|88602923|ref|YP_503101.1| - 0.34 10.9 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 TrbC PF04956.13 gi|88602923|ref|YP_503101.1| - 1.2 9.4 9.1 3.8 7.8 1.6 2.6 2 0 0 2 2 2 0 TrbC/VIRB2 family PBP_like_2 PF12849.7 gi|88602924|ref|YP_503102.1| - 4.3e-48 164.4 1.2 1.1e-47 163.1 1.2 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|88602924|ref|YP_503102.1| - 3.3e-22 78.6 0.1 4e-22 78.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|88602924|ref|YP_503102.1| - 2e-12 47.3 0.0 2.1e-11 44.0 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88602924|ref|YP_503102.1| - 4.1e-06 27.0 0.6 0.00013 22.0 0.6 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|88602924|ref|YP_503102.1| - 0.00044 19.7 0.0 0.0014 18.1 0.0 1.7 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_6 PF13343.6 gi|88602924|ref|YP_503102.1| - 0.0041 16.6 0.0 0.013 15.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|88602925|ref|YP_503103.1| - 3.2e-30 105.4 0.0 4.2e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88602925|ref|YP_503103.1| - 4.2e-07 30.1 0.0 0.011 15.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88602925|ref|YP_503103.1| - 2.2e-06 27.3 0.0 4.1e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|88602925|ref|YP_503103.1| - 0.00044 19.9 0.1 0.08 12.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|88602925|ref|YP_503103.1| - 0.0025 17.5 0.3 0.0052 16.5 0.2 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|88602925|ref|YP_503103.1| - 0.0044 17.6 0.8 0.34 11.5 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|88602925|ref|YP_503103.1| - 0.0057 16.4 0.0 0.45 10.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|88602925|ref|YP_503103.1| - 0.014 15.6 0.7 0.22 11.8 0.7 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|88602925|ref|YP_503103.1| - 0.037 14.4 0.1 0.12 12.7 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|88602925|ref|YP_503103.1| - 0.046 13.9 0.4 0.15 12.2 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|88602925|ref|YP_503103.1| - 0.046 13.4 0.1 0.095 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|88602925|ref|YP_503103.1| - 0.06 13.1 0.0 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|88602925|ref|YP_503103.1| - 0.1 12.5 0.2 0.19 11.6 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|88602925|ref|YP_503103.1| - 0.12 12.0 0.1 0.53 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|88602925|ref|YP_503103.1| - 0.13 11.6 0.0 7.2 5.9 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 gi|88602925|ref|YP_503103.1| - 0.14 12.4 0.6 0.43 10.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain MacB_PCD PF12704.7 gi|88602926|ref|YP_503104.1| - 9.1e-11 42.5 0.8 1.7e-10 41.6 0.8 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|88602926|ref|YP_503104.1| - 2.6e-06 27.8 0.2 2.6e-06 27.8 0.2 3.1 3 0 0 3 3 3 1 FtsX-like permease family CARDB PF07705.11 gi|88602927|ref|YP_503105.1| - 9e-06 25.9 0.7 0.22 11.8 0.0 3.5 3 1 0 3 3 3 2 CARDB NPCBM_assoc PF10633.9 gi|88602927|ref|YP_503105.1| - 1e-05 25.7 0.3 0.11 12.7 0.0 4.1 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|88602927|ref|YP_503105.1| - 0.078 13.2 0.2 80 3.5 0.0 3.9 2 1 1 3 3 3 0 IG-like fold at C-terminal of FixG, putative oxidoreductase MG4 PF17789.1 gi|88602927|ref|YP_503105.1| - 0.093 12.9 0.2 0.49 10.6 0.0 2.3 3 0 0 3 3 3 0 Macroglobulin domain MG4 ASH PF15780.5 gi|88602927|ref|YP_503105.1| - 0.096 12.9 0.1 1.9 8.8 0.0 2.7 2 1 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Transglut_C PF00927.22 gi|88602927|ref|YP_503105.1| - 0.11 12.6 0.0 1.6 8.9 0.0 2.5 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain N_BRCA1_IG PF16158.5 gi|88602927|ref|YP_503105.1| - 0.11 13.2 0.0 12 6.6 0.0 3.0 3 0 0 3 3 3 0 Ig-like domain from next to BRCA1 gene TetR_N PF00440.23 gi|88602928|ref|YP_503106.1| - 6.9e-16 57.8 0.1 1.1e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|88602928|ref|YP_503106.1| - 0.00036 20.7 0.1 0.0006 20.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_7 PF02796.15 gi|88602928|ref|YP_503106.1| - 0.025 14.7 0.1 0.072 13.2 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_22 PF13309.6 gi|88602928|ref|YP_503106.1| - 0.12 12.5 0.0 0.35 11.0 0.0 1.9 1 1 0 1 1 1 0 HTH domain HEPN PF05168.14 gi|88602929|ref|YP_503107.1| - 3.8e-10 39.9 0.8 6.1e-10 39.3 0.8 1.2 1 0 0 1 1 1 1 HEPN domain Prim-Pol PF09250.11 gi|88602931|ref|YP_503109.1| - 0.0011 19.3 0.0 0.0024 18.3 0.0 1.5 1 1 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal zf-CHC2 PF01807.20 gi|88602931|ref|YP_503109.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 CHC2 zinc finger PIN PF01850.21 gi|88602935|ref|YP_503113.1| - 4e-14 53.2 0.1 4.9e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 PIN domain HSDR_N PF04313.14 gi|88602936|ref|YP_503114.1| - 0.15 12.0 0.2 7.5 6.5 0.1 2.0 1 1 1 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1828 PF08861.10 gi|88602938|ref|YP_503116.1| - 1.3e-25 89.5 0.0 2.6e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF1828 DDE_Tnp_1 PF01609.21 gi|88602940|ref|YP_503118.1| - 4.6e-12 46.0 0.0 7.2e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|88602940|ref|YP_503118.1| - 0.094 12.7 0.4 0.24 11.5 0.0 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) SWIM PF04434.17 gi|88602941|ref|YP_503119.1| - 2.3e-05 24.0 0.2 4.1e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger SNF2_N PF00176.23 gi|88602942|ref|YP_503120.1| - 5.9e-59 199.5 0.0 9e-59 198.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.8 gi|88602942|ref|YP_503120.1| - 2.4e-28 98.7 0.0 5.4e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.31 gi|88602942|ref|YP_503120.1| - 1.5e-16 60.8 0.0 2.8e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88602942|ref|YP_503120.1| - 0.0068 16.4 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|88602942|ref|YP_503120.1| - 0.034 13.4 0.0 0.065 12.4 0.0 1.4 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SWIM PF04434.17 gi|88602943|ref|YP_503121.1| - 0.011 15.4 1.8 0.023 14.4 1.8 1.5 1 0 0 1 1 1 0 SWIM zinc finger AAA_14 PF13173.6 gi|88602944|ref|YP_503122.1| - 1.5e-32 112.4 0.0 3.2e-32 111.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88602944|ref|YP_503122.1| - 3.5e-09 36.8 0.0 5.4e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_24 PF13479.6 gi|88602944|ref|YP_503122.1| - 0.003 17.3 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Hydrolase_4 PF12146.8 gi|88602945|ref|YP_503123.1| - 1e-09 38.0 0.0 8.5e-07 28.5 0.0 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|88602945|ref|YP_503123.1| - 7.6e-07 29.9 0.0 2.3e-06 28.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|88602945|ref|YP_503123.1| - 0.0094 15.6 0.0 3.1 7.3 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold DUF5532 PF17673.1 gi|88602946|ref|YP_503124.1| - 0.038 14.0 0.1 0.052 13.6 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5532) A_deaminase PF00962.22 gi|88602947|ref|YP_503125.1| - 1.3e-26 93.7 0.0 5.9e-24 85.0 0.0 2.1 2 0 0 2 2 2 2 Adenosine/AMP deaminase HEPN PF05168.14 gi|88602949|ref|YP_503127.1| - 4e-20 72.1 0.0 4.9e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 HEPN domain Polbeta PF18765.1 gi|88602950|ref|YP_503128.1| - 3.9e-11 42.9 0.2 6.4e-11 42.2 0.2 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88602950|ref|YP_503128.1| - 9.1e-09 35.5 0.1 1e-08 35.4 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_transf PF04439.12 gi|88602950|ref|YP_503128.1| - 0.0083 15.3 0.3 0.015 14.5 0.2 1.5 1 1 0 1 1 1 1 Streptomycin adenylyltransferase PEGA PF08308.11 gi|88602951|ref|YP_503129.1| - 3.3e-15 55.7 0.1 1.6e-14 53.5 0.0 2.1 2 0 0 2 2 2 1 PEGA domain PKD PF00801.20 gi|88602951|ref|YP_503129.1| - 2.6e-11 43.2 2.7 1.2e-10 41.1 0.3 2.4 2 0 0 2 2 2 1 PKD domain Methyltransf_25 PF13649.6 gi|88602952|ref|YP_503130.1| - 3.2e-16 59.8 0.0 8.2e-16 58.5 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88602952|ref|YP_503130.1| - 6.7e-15 55.5 0.0 1.2e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88602952|ref|YP_503130.1| - 5.5e-13 49.0 0.0 7.6e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88602952|ref|YP_503130.1| - 7.6e-08 32.1 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|88602952|ref|YP_503130.1| - 1.7e-07 31.9 0.0 3.1e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88602952|ref|YP_503130.1| - 1e-06 28.7 0.0 2.3e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88602952|ref|YP_503130.1| - 1.2e-06 28.0 0.0 2.4e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|88602952|ref|YP_503130.1| - 4.9e-06 27.5 0.0 7.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|88602952|ref|YP_503130.1| - 5.5e-05 22.7 0.0 8.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|88602952|ref|YP_503130.1| - 0.00068 19.1 0.0 0.0016 17.9 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|88602952|ref|YP_503130.1| - 0.0016 17.9 0.0 0.0023 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|88602952|ref|YP_503130.1| - 0.0041 16.9 0.0 0.011 15.5 0.0 1.6 1 1 1 2 2 2 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|88602952|ref|YP_503130.1| - 0.0052 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NADH-UOR_E PF16514.5 gi|88602952|ref|YP_503130.1| - 0.016 15.5 0.0 0.044 14.1 0.0 1.6 2 0 0 2 2 1 0 putative NADH-ubiquinone oxidoreductase chain E Methyltransf_3 PF01596.17 gi|88602952|ref|YP_503130.1| - 0.039 13.1 0.0 0.064 12.4 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase GidB PF02527.15 gi|88602952|ref|YP_503130.1| - 0.041 13.2 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|88602952|ref|YP_503130.1| - 0.048 13.4 0.0 0.076 12.8 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|88602952|ref|YP_503130.1| - 0.066 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 HNH PF01844.23 gi|88602953|ref|YP_503131.1| - 5.5e-12 45.7 4.5 5.5e-12 45.7 4.5 1.7 2 0 0 2 2 2 1 HNH endonuclease HNH_5 PF14279.6 gi|88602953|ref|YP_503131.1| - 2.9e-10 39.9 2.2 6.7e-10 38.7 0.9 2.1 2 0 0 2 2 2 1 HNH endonuclease HNH_4 PF13395.6 gi|88602953|ref|YP_503131.1| - 0.0035 17.2 0.0 0.0061 16.4 0.0 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|88602953|ref|YP_503131.1| - 0.032 14.4 0.5 0.11 12.6 0.5 2.0 1 1 0 1 1 1 0 HNH endonuclease HD PF01966.22 gi|88602954|ref|YP_503132.1| - 1.2e-06 28.7 0.6 2.3e-06 27.8 0.6 1.5 1 0 0 1 1 1 1 HD domain DUF2897 PF11446.8 gi|88602955|ref|YP_503133.1| - 0.57 10.1 2.1 3 7.8 1.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) DUF1211 PF06736.11 gi|88602956|ref|YP_503134.1| - 8.8e-21 74.2 3.8 8.8e-21 74.2 3.8 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) VIT1 PF01988.19 gi|88602957|ref|YP_503135.1| - 3.5e-39 134.9 8.4 3.9e-39 134.8 8.4 1.0 1 0 0 1 1 1 1 VIT family Claudin_2 PF13903.6 gi|88602957|ref|YP_503135.1| - 0.094 12.5 0.0 0.094 12.5 0.0 2.1 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF443 PF04276.12 gi|88602957|ref|YP_503135.1| - 0.11 12.2 0.5 0.17 11.7 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF443) MFS_1 PF07690.16 gi|88602958|ref|YP_503136.1| - 4.5e-27 94.9 51.2 8.4e-18 64.4 21.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88602958|ref|YP_503136.1| - 1.6e-05 24.0 10.6 1.6e-05 24.0 10.6 2.0 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|88602958|ref|YP_503136.1| - 0.0068 15.3 1.2 0.0068 15.3 1.2 2.8 1 1 1 3 3 3 1 MFS_1 like family Orai-1 PF07856.12 gi|88602958|ref|YP_503136.1| - 0.62 9.7 4.8 1.5 8.4 0.2 2.9 3 0 0 3 3 3 0 Mediator of CRAC channel activity DUF4293 PF14126.6 gi|88602958|ref|YP_503136.1| - 1.9 8.7 8.0 0.41 10.9 2.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4293) Peptidase_C69 PF03577.15 gi|88602959|ref|YP_503137.1| - 8.8e-52 176.4 0.0 1.2e-50 172.6 0.0 2.1 1 1 0 1 1 1 1 Peptidase family C69 DUF521 PF04412.13 gi|88602960|ref|YP_503138.1| - 1.5e-114 382.8 0.0 1.9e-114 382.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|88602960|ref|YP_503138.1| - 4.1e-21 74.5 0.1 8.2e-21 73.6 0.1 1.5 1 0 0 1 1 1 1 Aconitase X swivel domain ACD PF16671.5 gi|88602961|ref|YP_503139.1| - 0.0039 15.6 0.0 0.0055 15.1 0.0 1.1 1 0 0 1 1 1 1 Actin cross-linking domain HTH_15 PF12324.8 gi|88602961|ref|YP_503139.1| - 0.012 15.6 0.1 0.033 14.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase FeoC PF09012.10 gi|88602961|ref|YP_503139.1| - 0.016 15.3 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_20 PF12840.7 gi|88602961|ref|YP_503139.1| - 0.036 14.1 0.1 0.076 13.1 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain SelB-wing_1 PF09105.10 gi|88602961|ref|YP_503139.1| - 0.07 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Sigma70_r3 PF04539.16 gi|88602961|ref|YP_503139.1| - 0.081 13.0 0.1 0.56 10.3 0.1 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 Spore_III_AB PF09548.10 gi|88602961|ref|YP_503139.1| - 0.14 12.3 0.2 0.36 10.9 0.2 1.7 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Fer4 PF00037.27 gi|88602962|ref|YP_503140.1| - 1.8e-11 43.3 17.9 3.5e-07 29.8 2.7 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88602962|ref|YP_503140.1| - 6.9e-10 38.4 10.8 5e-05 23.1 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88602962|ref|YP_503140.1| - 1.3e-09 38.5 3.6 4.5e-06 27.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88602962|ref|YP_503140.1| - 1.7e-09 37.6 10.6 2.7e-09 37.0 10.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88602962|ref|YP_503140.1| - 1.7e-08 34.4 22.8 7.9e-06 25.9 13.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88602962|ref|YP_503140.1| - 2e-08 34.3 8.0 3.7e-08 33.4 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88602962|ref|YP_503140.1| - 2.6e-08 33.6 15.6 3e-05 23.9 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88602962|ref|YP_503140.1| - 3e-08 34.5 5.2 5.7e-05 24.0 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88602962|ref|YP_503140.1| - 8.7e-07 29.4 4.7 0.0071 16.9 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88602962|ref|YP_503140.1| - 1.1e-06 28.7 11.3 2.3e-05 24.6 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88602962|ref|YP_503140.1| - 4.7e-05 23.7 7.1 0.0059 17.0 0.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88602962|ref|YP_503140.1| - 0.001 19.9 8.6 0.3 11.9 0.2 2.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88602962|ref|YP_503140.1| - 0.0014 19.2 16.4 0.033 14.7 1.9 3.0 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Keratin_matx PF04579.12 gi|88602962|ref|YP_503140.1| - 0.015 15.6 2.7 2 8.8 0.4 2.1 2 0 0 2 2 2 0 Keratin, high-sulphur matrix protein Fer4_15 PF13459.6 gi|88602962|ref|YP_503140.1| - 0.86 10.4 19.2 3.4 8.5 4.0 3.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|88602962|ref|YP_503140.1| - 1 9.5 6.0 1.1 9.5 0.7 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|88602962|ref|YP_503140.1| - 3.1 8.9 12.9 0.33 12.0 4.1 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Acylphosphatase PF00708.18 gi|88602964|ref|YP_503142.1| - 1.1e-17 64.2 0.0 2.3e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase TPR_10 PF13374.6 gi|88602964|ref|YP_503142.1| - 0.0025 17.6 1.1 2.6 8.0 0.1 4.0 1 1 3 4 4 4 1 Tetratricopeptide repeat Cas_DxTHG PF09455.10 gi|88602964|ref|YP_503142.1| - 0.0042 16.7 5.7 0.005 16.5 5.7 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family CENP-H PF05837.12 gi|88602964|ref|YP_503142.1| - 0.044 14.2 15.9 0.033 14.6 8.4 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF16 PF01519.16 gi|88602964|ref|YP_503142.1| - 0.17 12.4 14.2 1.1 9.8 6.6 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 HEPN_Apea PF18739.1 gi|88602964|ref|YP_503142.1| - 0.21 12.1 1.5 1.2 9.6 1.5 2.2 1 1 0 1 1 1 0 Apea-like HEPN APG6_N PF17675.1 gi|88602964|ref|YP_503142.1| - 0.76 10.3 21.7 5.7 7.5 21.7 2.2 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF1640 PF07798.11 gi|88602964|ref|YP_503142.1| - 0.9 9.6 16.8 2.2 8.3 16.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Atg14 PF10186.9 gi|88602964|ref|YP_503142.1| - 1 8.4 10.5 1.5 7.8 10.5 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3972 PF13118.6 gi|88602964|ref|YP_503142.1| - 1.5 9.3 13.3 0.47 10.9 5.2 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3972) ParE_toxin PF05016.15 gi|88602966|ref|YP_503144.1| - 0.00022 21.8 0.8 0.00029 21.4 0.8 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|88602966|ref|YP_503144.1| - 0.011 15.7 0.6 0.06 13.3 0.6 1.9 1 1 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system 12TM_1 PF09847.9 gi|88602966|ref|YP_503144.1| - 0.081 12.0 0.3 0.12 11.4 0.1 1.3 1 1 0 1 1 1 0 Membrane protein of 12 TMs HicB_lk_antitox PF15919.5 gi|88602968|ref|YP_503146.1| - 3.6e-05 23.9 0.0 4.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF5395 PF17373.2 gi|88602968|ref|YP_503146.1| - 0.014 16.1 0.0 0.014 16.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5395) Lactamase_B_3 PF13483.6 gi|88602969|ref|YP_503147.1| - 3.2e-25 88.9 0.0 3.9e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|88602969|ref|YP_503147.1| - 3.1e-20 72.5 0.5 4.5e-20 72.0 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88602969|ref|YP_503147.1| - 9.4e-09 35.6 2.6 2.1e-08 34.4 2.5 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_23 PF13384.6 gi|88602970|ref|YP_503148.1| - 1.3e-07 31.3 0.0 6.5e-05 22.6 0.0 2.8 2 1 0 2 2 2 1 Homeodomain-like domain GerE PF00196.19 gi|88602970|ref|YP_503148.1| - 6.5e-07 28.8 0.0 6.4e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|88602970|ref|YP_503148.1| - 2.8e-06 27.0 0.2 0.00024 20.8 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|88602970|ref|YP_503148.1| - 0.00029 20.4 1.4 0.0088 15.7 0.0 2.8 3 0 0 3 3 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|88602970|ref|YP_503148.1| - 0.00058 19.3 0.6 0.13 11.8 0.1 3.2 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|88602970|ref|YP_503148.1| - 0.00063 19.8 0.0 0.0073 16.4 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|88602970|ref|YP_503148.1| - 0.00074 19.0 0.8 0.0028 17.2 0.0 2.4 4 0 0 4 4 2 1 Winged helix-turn-helix DNA-binding MerR PF00376.23 gi|88602970|ref|YP_503148.1| - 0.0014 18.4 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_Tnp_ISL3 PF13542.6 gi|88602970|ref|YP_503148.1| - 0.0023 17.3 0.0 0.0067 15.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1 PF01527.20 gi|88602970|ref|YP_503148.1| - 0.0035 17.6 0.0 0.023 15.0 0.0 2.1 2 0 0 2 2 2 1 Transposase HTH_10 PF04967.12 gi|88602970|ref|YP_503148.1| - 0.0044 16.8 0.0 0.02 14.7 0.0 2.1 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_ECF PF07638.11 gi|88602970|ref|YP_503148.1| - 0.0057 16.6 0.4 0.63 9.9 0.0 2.3 1 1 1 2 2 2 1 ECF sigma factor HTH_Mga PF08280.11 gi|88602970|ref|YP_503148.1| - 0.012 15.6 0.0 0.035 14.1 0.0 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 gi|88602970|ref|YP_503148.1| - 0.013 15.6 0.0 0.043 13.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|88602970|ref|YP_503148.1| - 0.014 15.9 1.2 0.047 14.1 0.2 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|88602970|ref|YP_503148.1| - 0.015 15.4 0.0 0.087 12.9 0.0 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|88602970|ref|YP_503148.1| - 0.018 15.2 0.0 0.057 13.6 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|88602970|ref|YP_503148.1| - 0.022 14.6 0.0 0.061 13.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AKAP2_C PF15304.6 gi|88602970|ref|YP_503148.1| - 0.022 14.1 0.6 0.029 13.7 0.6 1.1 1 0 0 1 1 1 0 A-kinase anchor protein 2 C-terminus HTH_8 PF02954.19 gi|88602970|ref|YP_503148.1| - 0.025 14.4 0.0 0.16 11.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.6 gi|88602970|ref|YP_503148.1| - 0.026 14.4 0.1 0.64 9.9 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|88602970|ref|YP_503148.1| - 0.027 14.6 0.2 1 9.6 0.0 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain MerR_1 PF13411.6 gi|88602970|ref|YP_503148.1| - 0.03 14.4 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_IclR PF09339.10 gi|88602970|ref|YP_503148.1| - 0.11 12.4 0.4 0.63 9.9 0.0 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain AbiEi_4 PF13338.6 gi|88602970|ref|YP_503148.1| - 0.11 12.7 0.0 0.56 10.4 0.0 2.2 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin GlutR_dimer PF00745.20 gi|88602970|ref|YP_503148.1| - 0.12 12.8 1.3 0.31 11.5 0.2 2.1 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain HTH_AraC PF00165.23 gi|88602970|ref|YP_503148.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma70_r3 PF04539.16 gi|88602970|ref|YP_503148.1| - 0.7 10.0 4.5 6.4 7.0 0.1 3.1 3 0 0 3 3 3 0 Sigma-70 region 3 HGTP_anticodon PF03129.20 gi|88602971|ref|YP_503149.1| - 2.4e-22 78.9 0.0 4.8e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|88602971|ref|YP_503149.1| - 1.2e-10 41.6 0.0 1.4e-09 38.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ERCC4 PF02732.15 gi|88602972|ref|YP_503150.1| - 1e-23 84.3 0.0 3.1e-23 82.7 0.0 1.8 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|88602972|ref|YP_503150.1| - 2.9e-23 82.3 0.0 2.7e-21 76.0 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|88602972|ref|YP_503150.1| - 1.2e-18 67.5 0.3 9e-18 64.6 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|88602972|ref|YP_503150.1| - 4.1e-16 59.4 0.0 1.1e-15 58.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|88602972|ref|YP_503150.1| - 6.7e-12 45.8 2.3 8.7e-12 45.5 0.1 2.5 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|88602972|ref|YP_503150.1| - 9.9e-09 35.2 0.0 3.4e-08 33.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|88602972|ref|YP_503150.1| - 4e-07 29.6 0.2 4.3e-06 26.3 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif PhoH PF02562.16 gi|88602972|ref|YP_503150.1| - 0.005 16.3 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 PhoH-like protein HHH_3 PF12836.7 gi|88602972|ref|YP_503150.1| - 0.0079 16.4 0.0 0.22 11.8 0.0 2.9 1 1 0 1 1 1 1 Helix-hairpin-helix motif Nitroreductase PF00881.24 gi|88602972|ref|YP_503150.1| - 0.011 15.8 0.5 1.5 8.8 0.0 3.3 3 0 0 3 3 3 0 Nitroreductase family 5_3_exonuc PF01367.20 gi|88602972|ref|YP_503150.1| - 0.07 13.7 0.4 1.3 9.7 0.1 3.0 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Auto_anti-p27 PF06677.12 gi|88602973|ref|YP_503151.1| - 7.6e-16 58.0 2.4 8.3e-16 57.9 1.3 1.6 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|88602973|ref|YP_503151.1| - 0.0014 18.6 1.7 0.0021 18.0 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|88602973|ref|YP_503151.1| - 0.026 14.0 0.9 0.046 13.2 0.9 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|88602973|ref|YP_503151.1| - 0.08 12.9 2.4 0.12 12.4 2.4 1.2 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.16 gi|88602973|ref|YP_503151.1| - 0.1 12.6 2.4 0.25 11.4 2.4 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0147 PF03685.13 gi|88602974|ref|YP_503152.1| - 2.7e-34 117.1 0.7 3e-34 116.9 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0047 PF01894.17 gi|88602975|ref|YP_503153.1| - 1.3e-33 115.5 0.0 1.8e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 ThiC_Rad_SAM PF01964.18 gi|88602976|ref|YP_503154.1| - 1.1e-173 577.9 1.8 1.2e-173 577.7 1.8 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Radical_SAM PF04055.21 gi|88602977|ref|YP_503155.1| - 5.9e-19 69.1 0.0 7.3e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88602977|ref|YP_503155.1| - 1.4e-07 31.9 0.0 1.8e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|88602977|ref|YP_503155.1| - 0.013 15.6 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain AAA_17 PF13207.6 gi|88602978|ref|YP_503156.1| - 5e-15 56.1 0.0 8.2e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|88602978|ref|YP_503156.1| - 4.8e-08 33.6 0.0 6.7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|88602978|ref|YP_503156.1| - 0.0021 18.2 0.0 0.011 15.9 0.0 1.9 1 1 0 2 2 2 1 AAA domain PEP-utilizers PF00391.23 gi|88602978|ref|YP_503156.1| - 0.0059 16.3 3.0 0.16 11.7 3.0 2.3 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain ADK PF00406.22 gi|88602978|ref|YP_503156.1| - 0.04 14.0 0.0 0.14 12.3 0.0 1.8 2 1 0 2 2 2 0 Adenylate kinase AP_endonuc_2 PF01261.24 gi|88602979|ref|YP_503157.1| - 8.9e-25 87.4 0.2 1.2e-24 87.0 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Lactamase_B_2 PF12706.7 gi|88602980|ref|YP_503158.1| - 4.6e-16 58.9 0.6 5.3e-08 32.6 0.9 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88602980|ref|YP_503158.1| - 4.3e-07 30.1 0.1 1.6e-05 25.0 0.0 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|88602980|ref|YP_503158.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease S1 PF00575.23 gi|88602981|ref|YP_503159.1| - 2.9e-06 27.5 0.1 7.9e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 S1 RNA binding domain DHH PF01368.20 gi|88602981|ref|YP_503159.1| - 7.9e-05 22.8 0.3 0.00015 21.9 0.3 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.25 gi|88602981|ref|YP_503159.1| - 0.00011 22.2 0.2 0.00095 19.1 0.1 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|88602981|ref|YP_503159.1| - 0.018 15.3 0.0 0.096 12.9 0.0 2.2 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Put_DNA-bind_N PF06971.13 gi|88602982|ref|YP_503160.1| - 0.043 13.8 0.1 0.075 13.1 0.1 1.5 1 1 0 1 1 1 0 Putative DNA-binding protein N-terminus PsiE PF06146.12 gi|88602983|ref|YP_503161.1| - 4.4e-18 65.4 7.6 4.4e-18 65.4 7.6 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E FixQ PF05545.11 gi|88602983|ref|YP_503161.1| - 0.038 14.0 7.7 0.2 11.7 0.0 3.3 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ MFS_1 PF07690.16 gi|88602984|ref|YP_503162.1| - 6.5e-37 127.3 90.8 7.2e-29 100.8 57.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily AMP-binding PF00501.28 gi|88602985|ref|YP_503163.1| - 2e-101 339.7 0.0 2.3e-101 339.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88602985|ref|YP_503163.1| - 5.5e-27 94.6 0.5 1.1e-26 93.6 0.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|88602985|ref|YP_503163.1| - 1.2e-19 70.0 2.8 2.5e-19 68.9 2.8 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus PAS_9 PF13426.7 gi|88602986|ref|YP_503164.1| - 2.9e-15 56.4 0.0 1.3e-06 28.5 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|88602986|ref|YP_503164.1| - 4.2e-10 39.9 0.0 0.0012 19.1 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|88602986|ref|YP_503164.1| - 1.5e-09 37.9 0.0 0.00099 19.1 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88602986|ref|YP_503164.1| - 2.9e-06 27.2 0.0 4.8e-05 23.3 0.0 2.8 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|88602986|ref|YP_503164.1| - 7.7e-05 22.9 0.0 0.064 13.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold HTH_IclR PF09339.10 gi|88602986|ref|YP_503164.1| - 0.00018 21.2 0.1 0.00044 20.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|88602986|ref|YP_503164.1| - 0.00021 21.1 0.1 0.00049 20.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|88602986|ref|YP_503164.1| - 0.015 15.0 0.0 0.076 12.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.19 gi|88602986|ref|YP_503164.1| - 0.094 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|88602986|ref|YP_503164.1| - 0.1 12.5 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_45 PF14947.6 gi|88602986|ref|YP_503164.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix TBPIP PF07106.13 gi|88602986|ref|YP_503164.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_36 PF13730.6 gi|88602986|ref|YP_503164.1| - 0.16 12.0 0.0 0.69 9.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HisKA_2 PF07568.12 gi|88602987|ref|YP_503165.1| - 3.1e-27 94.5 4.4 1.2e-25 89.4 2.0 3.1 2 0 0 2 2 2 1 Histidine kinase Response_reg PF00072.24 gi|88602987|ref|YP_503165.1| - 1.2e-24 86.6 0.6 4.4e-24 84.8 0.2 2.3 3 0 0 3 3 3 1 Response regulator receiver domain PAS_3 PF08447.12 gi|88602987|ref|YP_503165.1| - 4.7e-16 58.8 0.1 1.1e-15 57.7 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|88602987|ref|YP_503165.1| - 2.4e-09 37.7 0.0 1.1e-08 35.6 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|88602987|ref|YP_503165.1| - 8.4e-09 35.6 0.3 7e-05 23.0 0.1 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88602987|ref|YP_503165.1| - 3.5e-06 27.0 0.1 0.00074 19.5 0.1 2.9 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|88602987|ref|YP_503165.1| - 9.4e-06 25.6 0.0 4.4e-05 23.4 0.0 2.1 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|88602987|ref|YP_503165.1| - 1.2e-05 25.9 0.4 0.00041 21.0 0.1 2.7 2 0 0 2 2 2 1 HWE histidine kinase PAS_4 PF08448.10 gi|88602987|ref|YP_503165.1| - 3.1e-05 24.2 0.0 0.39 11.0 0.0 3.1 4 0 0 4 4 4 2 PAS fold TyeA PF09059.10 gi|88602987|ref|YP_503165.1| - 0.0055 16.8 0.5 4.1 7.6 0.0 3.8 3 0 0 3 3 3 1 TyeA SPOB_a PF14689.6 gi|88602987|ref|YP_503165.1| - 0.025 14.3 4.4 0.39 10.4 2.0 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Response_reg PF00072.24 gi|88602988|ref|YP_503166.1| - 8.2e-27 93.6 0.1 1.6e-26 92.7 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88602988|ref|YP_503166.1| - 0.0077 16.2 0.1 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 PAS fold Acyl_transf_1 PF00698.21 gi|88602988|ref|YP_503166.1| - 0.2 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Acyl transferase domain Acylphosphatase PF00708.18 gi|88602991|ref|YP_503169.1| - 4.3e-28 97.6 0.2 1.3e-27 96.0 0.0 1.8 2 0 0 2 2 2 1 Acylphosphatase T2SSM_b PF10741.9 gi|88602991|ref|YP_503169.1| - 0.063 13.1 0.0 0.14 12.0 0.0 1.5 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M subtype b tRNA_synthFbeta PF17759.1 gi|88602992|ref|YP_503170.1| - 5.1e-39 133.9 0.0 7.1e-39 133.5 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|88602992|ref|YP_503170.1| - 4.4e-18 65.3 0.0 7.4e-15 55.0 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|88602992|ref|YP_503170.1| - 8.6e-13 48.3 0.0 1.5e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_His PF13393.6 gi|88602992|ref|YP_503170.1| - 0.057 12.7 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase tRNA-synt_2d PF01409.20 gi|88602993|ref|YP_503171.1| - 1.3e-88 296.6 0.0 1.7e-88 296.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|88602993|ref|YP_503171.1| - 5.9e-08 32.4 0.0 3.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain PheRS_DBD3 PF18553.1 gi|88602993|ref|YP_503171.1| - 0.0015 18.8 0.0 0.0043 17.3 0.0 1.8 1 0 0 1 1 1 1 PheRS DNA binding domain 3 tRNA-synt_2 PF00152.20 gi|88602993|ref|YP_503171.1| - 0.0062 15.6 0.2 0.047 12.8 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) TrmB PF01978.19 gi|88602993|ref|YP_503171.1| - 0.018 14.9 0.3 0.49 10.3 0.0 2.8 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB Fic_N PF13784.6 gi|88602994|ref|YP_503172.1| - 1.5e-23 82.6 0.0 3e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|88602994|ref|YP_503172.1| - 7.6e-20 71.6 0.0 1.6e-19 70.6 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family MarR_2 PF12802.7 gi|88602994|ref|YP_503172.1| - 3.3e-05 23.7 0.0 7.4e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|88602994|ref|YP_503172.1| - 0.00018 21.0 0.0 0.00043 19.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|88602994|ref|YP_503172.1| - 0.00048 20.1 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|88602994|ref|YP_503172.1| - 0.00055 19.8 0.1 0.024 14.5 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|88602994|ref|YP_503172.1| - 0.004 17.2 0.0 0.0098 15.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 gi|88602994|ref|YP_503172.1| - 0.0075 16.0 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TFIIE_alpha PF02002.17 gi|88602994|ref|YP_503172.1| - 0.025 14.4 0.1 0.056 13.3 0.1 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit Ribosomal_S25 PF03297.15 gi|88602994|ref|YP_503172.1| - 0.061 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 S25 ribosomal protein HTH_20 PF12840.7 gi|88602994|ref|YP_503172.1| - 0.084 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|88602994|ref|YP_503172.1| - 0.16 12.3 0.0 0.52 10.7 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator DUF724 PF05266.14 gi|88602994|ref|YP_503172.1| - 0.2 11.5 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) tRNA-synt_1b PF00579.25 gi|88602995|ref|YP_503173.1| - 1.4e-28 100.1 0.0 1.5e-15 57.4 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.17 gi|88602996|ref|YP_503174.1| - 1.2e-45 153.5 2.7 6.4e-23 80.6 0.1 2.7 3 0 0 3 3 3 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|88602996|ref|YP_503174.1| - 2.1e-30 104.2 0.5 7.5e-14 51.2 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|88602996|ref|YP_503174.1| - 2.1e-06 27.8 0.0 0.0082 16.3 0.0 2.6 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term Ribosomal_L32e PF01655.18 gi|88602996|ref|YP_503174.1| - 0.061 13.7 0.1 0.22 12.0 0.1 1.9 2 0 0 2 2 2 0 Ribosomal protein L32 DUF308 PF03729.13 gi|88602997|ref|YP_503175.1| - 0.00023 21.4 10.0 0.00023 21.4 10.0 7.3 4 3 0 6 6 6 3 Short repeat of unknown function (DUF308) FHIPEP PF00771.20 gi|88602997|ref|YP_503175.1| - 0.00043 18.9 0.4 0.0015 17.1 0.0 2.0 2 0 0 2 2 2 1 FHIPEP family Trp_oprn_chp PF09534.10 gi|88602997|ref|YP_503175.1| - 1.9 8.3 10.2 22 4.8 0.1 4.0 2 1 1 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Thioredoxin PF00085.20 gi|88602998|ref|YP_503176.1| - 0.00078 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|88602998|ref|YP_503176.1| - 0.074 13.5 0.0 0.099 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Uteroglobin PF01099.17 gi|88602998|ref|YP_503176.1| - 0.18 12.1 0.1 1.3 9.4 0.0 2.1 1 1 1 2 2 2 0 Uteroglobin family DUF389 PF04087.14 gi|88602999|ref|YP_503177.1| - 4.3e-37 127.3 13.0 1.8e-36 125.3 13.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF389) NIR_SIR PF01077.22 gi|88603000|ref|YP_503178.1| - 4.5e-19 68.5 0.0 6.7e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|88603000|ref|YP_503178.1| - 2e-11 43.6 0.0 3.2e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Cupin_2 PF07883.11 gi|88603001|ref|YP_503179.1| - 3e-15 55.7 0.0 4.7e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|88603001|ref|YP_503179.1| - 0.0069 16.3 0.0 0.0087 16.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.13 gi|88603001|ref|YP_503179.1| - 0.023 15.0 0.0 0.029 14.7 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_1 PF00190.22 gi|88603001|ref|YP_503179.1| - 0.081 12.5 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 Cupin PAS_3 PF08447.12 gi|88603002|ref|YP_503180.1| - 1.2e-45 153.7 0.0 1.5e-18 66.9 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|88603002|ref|YP_503180.1| - 2.5e-36 124.1 0.1 7.4e-12 45.5 0.0 4.6 5 0 0 5 5 5 3 PAS domain PAS PF00989.25 gi|88603002|ref|YP_503180.1| - 6.6e-35 119.5 0.0 9.2e-13 48.2 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|88603002|ref|YP_503180.1| - 2.2e-30 105.1 0.0 9.7e-13 48.3 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|88603002|ref|YP_503180.1| - 1.2e-12 48.3 0.1 2.6e-12 47.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88603002|ref|YP_503180.1| - 2.9e-12 46.3 0.1 0.0016 18.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.6 gi|88603002|ref|YP_503180.1| - 1.4e-09 38.0 0.0 0.0006 19.9 0.0 3.5 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.24 gi|88603002|ref|YP_503180.1| - 4.8e-08 33.2 0.0 1.1e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain SPOB_a PF14689.6 gi|88603002|ref|YP_503180.1| - 0.014 15.1 1.0 0.035 13.8 1.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|88603002|ref|YP_503180.1| - 0.063 13.2 0.1 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 GHKL domain HATPase_c_2 PF13581.6 gi|88603002|ref|YP_503180.1| - 0.066 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CagS PF16707.5 gi|88603002|ref|YP_503180.1| - 0.093 12.7 0.3 0.49 10.4 0.1 2.1 2 0 0 2 2 2 0 Cag pathogenicity island protein S of Helicobacter pylori PAS_7 PF12860.7 gi|88603002|ref|YP_503180.1| - 0.1 12.7 0.4 3.3 7.9 0.0 3.3 4 0 0 4 4 4 0 PAS fold Nitroreductase PF00881.24 gi|88603003|ref|YP_503181.1| - 3.3e-22 79.3 0.0 5.7e-22 78.6 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|88603003|ref|YP_503181.1| - 1.1e-07 31.6 0.2 0.015 14.9 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase Fer4_16 PF13484.6 gi|88603003|ref|YP_503181.1| - 7.8e-06 26.7 4.7 0.0036 18.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88603003|ref|YP_503181.1| - 7.9e-06 26.0 7.2 1.4e-05 25.1 7.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603003|ref|YP_503181.1| - 4.2e-05 23.6 4.3 0.05 13.7 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603003|ref|YP_503181.1| - 0.0004 20.3 15.1 0.002 18.1 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603003|ref|YP_503181.1| - 0.0004 20.9 9.2 0.0088 16.6 10.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603003|ref|YP_503181.1| - 0.00046 20.1 13.1 0.05 13.7 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88603003|ref|YP_503181.1| - 0.0006 20.3 3.2 0.73 10.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603003|ref|YP_503181.1| - 0.00068 19.7 10.8 0.05 13.7 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603003|ref|YP_503181.1| - 0.0013 18.5 19.5 0.027 14.3 5.1 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88603003|ref|YP_503181.1| - 0.3 11.9 2.1 1.8 9.3 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|88603003|ref|YP_503181.1| - 1.6 9.2 12.3 4.6 7.8 2.1 2.3 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603003|ref|YP_503181.1| - 6.1 7.5 13.5 0.94 10.1 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Proton_antipo_M PF00361.20 gi|88603004|ref|YP_503182.1| - 1.6e-53 181.8 22.4 1.6e-53 181.8 22.4 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|88603004|ref|YP_503182.1| - 1.3e-09 37.9 0.0 1e-08 35.1 0.0 2.7 1 1 1 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF1418 PF07214.12 gi|88603004|ref|YP_503182.1| - 0.061 13.2 0.4 0.061 13.2 0.4 4.5 4 2 2 6 6 6 0 Protein of unknown function (DUF1418) NADHdh PF00146.21 gi|88603005|ref|YP_503183.1| - 2.5e-37 128.8 19.0 3.7e-37 128.3 19.0 1.2 1 0 0 1 1 1 1 NADH dehydrogenase PRA1 PF03208.19 gi|88603005|ref|YP_503183.1| - 5.9 6.5 11.0 5 6.7 1.0 2.7 2 1 0 2 2 2 0 PRA1 family protein Oxidored_q6 PF01058.22 gi|88603006|ref|YP_503184.1| - 2e-26 92.4 4.0 2.4e-26 92.1 4.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TrkA_N PF02254.18 gi|88603006|ref|YP_503184.1| - 0.097 12.9 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain Complex1_30kDa PF00329.19 gi|88603007|ref|YP_503185.1| - 2.2e-10 41.2 0.0 2.6e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|88603008|ref|YP_503186.1| - 3e-59 200.3 0.0 6e-42 143.6 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|88603008|ref|YP_503186.1| - 1.7e-15 56.9 1.4 4.2e-15 55.6 0.0 2.1 3 0 0 3 3 3 1 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|88603009|ref|YP_503187.1| - 4.9e-10 38.8 18.3 2.3e-07 30.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603009|ref|YP_503187.1| - 1.8e-07 31.2 14.6 2.5e-07 30.7 14.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603009|ref|YP_503187.1| - 4.3e-07 30.4 25.6 0.00022 21.8 17.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603009|ref|YP_503187.1| - 1.6e-06 28.2 15.6 2.4e-06 27.6 15.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603009|ref|YP_503187.1| - 5.3e-06 26.4 13.3 1.4e-05 25.1 12.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603009|ref|YP_503187.1| - 7.8e-06 26.3 12.8 0.0002 21.8 0.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603009|ref|YP_503187.1| - 4.3e-05 24.3 11.1 0.0088 17.0 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|88603009|ref|YP_503187.1| - 0.011 15.8 3.3 0.011 15.8 3.3 2.3 2 0 0 2 2 1 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|88603009|ref|YP_503187.1| - 0.016 15.4 0.3 0.016 15.4 0.3 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_4 PF12800.7 gi|88603009|ref|YP_503187.1| - 0.022 15.2 14.0 0.31 11.7 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603009|ref|YP_503187.1| - 0.037 14.5 19.2 4.3 7.8 18.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603009|ref|YP_503187.1| - 0.23 11.6 14.2 0.45 10.7 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603009|ref|YP_503187.1| - 0.45 10.7 11.3 1.7 8.8 11.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603009|ref|YP_503187.1| - 1.7 9.2 13.9 2.1 8.9 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I HicB_lk_antitox PF15919.5 gi|88603010|ref|YP_503188.1| - 0.019 15.1 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DDE_Tnp_1_6 PF13751.6 gi|88603011|ref|YP_503189.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88603011|ref|YP_503189.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88603011|ref|YP_503189.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88603011|ref|YP_503189.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain AAA_15 PF13175.6 gi|88603012|ref|YP_503190.1| - 3.7e-20 72.9 1.6 8.8e-11 42.1 0.5 2.5 2 1 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|88603012|ref|YP_503190.1| - 1.9e-17 64.0 7.4 1.9e-12 47.6 3.4 2.7 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|88603012|ref|YP_503190.1| - 4.9e-07 30.4 0.0 1.6e-06 28.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|88603012|ref|YP_503190.1| - 1.4e-06 27.9 0.0 6e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|88603012|ref|YP_503190.1| - 7.3e-05 22.2 0.0 0.0024 17.2 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) Rad17 PF03215.15 gi|88603012|ref|YP_503190.1| - 0.002 18.1 0.1 0.5 10.2 0.0 2.6 3 0 0 3 3 3 1 Rad17 P-loop domain ABC_tran PF00005.27 gi|88603012|ref|YP_503190.1| - 0.0022 18.5 0.0 0.018 15.6 0.0 2.4 2 1 0 2 2 2 1 ABC transporter AAA_14 PF13173.6 gi|88603012|ref|YP_503190.1| - 0.029 14.4 0.0 4.3 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88603012|ref|YP_503190.1| - 0.03 14.6 0.1 7.8 6.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|88603012|ref|YP_503190.1| - 0.031 14.7 0.2 12 6.4 0.1 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88603012|ref|YP_503190.1| - 0.055 13.7 2.5 5.6 7.2 0.2 3.7 4 1 0 4 4 4 0 AAA domain AAA_25 PF13481.6 gi|88603012|ref|YP_503190.1| - 0.13 11.9 0.0 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|88603013|ref|YP_503191.1| - 6.7e-24 85.3 19.0 2e-22 80.4 19.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|88603013|ref|YP_503191.1| - 3.3e-22 79.7 1.9 3.5e-18 66.5 0.1 2.9 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603013|ref|YP_503191.1| - 0.00026 20.5 0.6 0.093 12.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|88603013|ref|YP_503191.1| - 0.0012 18.2 0.1 0.13 11.5 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|88603013|ref|YP_503191.1| - 0.056 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Gtr1_RagA PF04670.12 gi|88603013|ref|YP_503191.1| - 0.065 12.6 0.8 0.88 8.9 0.1 2.1 1 1 0 2 2 2 0 Gtr1/RagA G protein conserved region vMSA PF00695.19 gi|88603013|ref|YP_503191.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus AAA_23 PF13476.6 gi|88603013|ref|YP_503191.1| - 0.57 10.6 6.0 2.1 8.8 6.0 2.0 1 1 0 1 1 1 0 AAA domain DUF1156 PF06634.12 gi|88603015|ref|YP_503193.1| - 2.4e-34 117.3 1.1 6.1e-34 116.0 1.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) MethyltransfD12 PF02086.15 gi|88603015|ref|YP_503193.1| - 9.3e-06 25.5 0.0 0.00022 21.0 0.0 2.3 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 gi|88603015|ref|YP_503193.1| - 1.8e-05 24.5 0.0 0.002 17.9 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 DUF3294 PF07957.11 gi|88603015|ref|YP_503193.1| - 0.14 11.9 0.1 5.2 6.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3294) AAA_21 PF13304.6 gi|88603016|ref|YP_503194.1| - 5.7e-31 108.5 0.9 1.2e-30 107.3 0.9 1.6 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88603016|ref|YP_503194.1| - 8e-22 78.4 0.1 5.5e-11 42.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|88603016|ref|YP_503194.1| - 2.7e-09 36.8 0.0 3.6e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88603016|ref|YP_503194.1| - 1.3e-08 35.7 0.1 3.6e-08 34.2 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|88603016|ref|YP_503194.1| - 1.4e-05 24.8 0.0 4.6e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF2813 PF11398.8 gi|88603016|ref|YP_503194.1| - 1.7e-05 24.2 0.0 0.067 12.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|88603016|ref|YP_503194.1| - 0.0031 18.0 0.0 0.0079 16.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter CRM1_repeat_2 PF18784.1 gi|88603016|ref|YP_503194.1| - 0.11 12.1 0.1 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 CRM1 / Exportin repeat 2 DUF4276 PF14103.6 gi|88603017|ref|YP_503195.1| - 2.2e-25 90.0 0.0 2.5e-25 89.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) DUF499 PF04465.12 gi|88603018|ref|YP_503196.1| - 3.5e-40 137.7 0.0 1.4e-39 135.7 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF499) HEPN_Swt1 PF18731.1 gi|88603018|ref|YP_503196.1| - 1.9e-35 121.7 1.1 1.9e-35 121.7 1.1 2.4 2 0 0 2 2 2 1 Swt1-like HEPN ATP-synt_D PF01813.17 gi|88603019|ref|YP_503197.1| - 1.1e-46 159.2 11.2 1.3e-46 158.9 11.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|88603020|ref|YP_503198.1| - 5.3e-65 219.0 0.0 7e-65 218.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain HAS-barrel PF09378.10 gi|88603020|ref|YP_503198.1| - 9.7e-12 44.9 0.5 2.7e-11 43.4 0.5 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab_N PF02874.23 gi|88603020|ref|YP_503198.1| - 1e-10 42.0 0.2 1.9e-10 41.1 0.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain DUF1887 PF09002.11 gi|88603020|ref|YP_503198.1| - 0.22 10.2 0.0 0.32 9.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) ATP-synt_ab PF00006.25 gi|88603021|ref|YP_503199.1| - 1.3e-91 306.0 0.0 1.7e-91 305.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|88603021|ref|YP_503199.1| - 2.1e-39 134.2 0.0 3.7e-39 133.3 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|88603021|ref|YP_503199.1| - 8.5e-11 42.2 0.2 2.7e-10 40.6 0.2 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|88603021|ref|YP_503199.1| - 0.097 12.6 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|88603021|ref|YP_503199.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.17 gi|88603022|ref|YP_503200.1| - 6.5e-17 61.6 0.0 7.7e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|88603023|ref|YP_503201.1| - 9.3e-78 262.1 1.1 1e-77 261.9 1.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|88603024|ref|YP_503202.1| - 4.6e-18 65.3 11.6 1.6e-17 63.6 11.6 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|88603024|ref|YP_503202.1| - 0.00049 20.5 10.0 0.00092 19.6 10.0 1.4 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DIT1_PvcA PF05141.12 gi|88603024|ref|YP_503202.1| - 0.058 12.9 0.3 0.072 12.5 0.3 1.2 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein ATP-synt_C PF00137.21 gi|88603025|ref|YP_503203.1| - 8.9e-12 45.2 12.9 1.2e-11 44.8 12.9 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|88603026|ref|YP_503204.1| - 2e-26 92.3 8.9 1e-13 50.2 0.0 3.7 4 0 0 4 4 4 2 V-type ATPase 116kDa subunit family DUF2730 PF10805.8 gi|88603026|ref|YP_503204.1| - 0.029 14.4 0.7 0.19 11.8 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Class_IIIsignal PF04021.12 gi|88603026|ref|YP_503204.1| - 8.9 6.4 8.1 6 7.0 1.0 3.4 2 0 0 2 2 2 0 Class III signal peptide V-ATPase_G_2 PF16999.5 gi|88603027|ref|YP_503205.1| - 1.7e-11 44.4 6.9 2e-11 44.2 6.9 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|88603027|ref|YP_503205.1| - 0.012 15.7 7.4 0.085 12.9 2.4 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) RRF PF01765.19 gi|88603027|ref|YP_503205.1| - 0.1 12.6 1.4 0.14 12.1 1.4 1.2 1 0 0 1 1 1 0 Ribosome recycling factor Nbl1_Borealin_N PF10444.9 gi|88603027|ref|YP_503205.1| - 0.24 11.1 2.9 11 5.8 0.0 2.8 2 1 1 3 3 3 0 Nbl1 / Borealin N terminal DivIVA PF05103.13 gi|88603027|ref|YP_503205.1| - 0.77 9.9 6.2 1.5 8.9 1.5 2.2 1 1 1 2 2 2 0 DivIVA protein Hjc PF01870.18 gi|88603028|ref|YP_503206.1| - 7e-05 22.7 0.1 0.0002 21.3 0.0 1.8 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|88603028|ref|YP_503206.1| - 0.00046 20.4 0.1 0.00083 19.6 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AHJR-like PF18743.1 gi|88603028|ref|YP_503206.1| - 0.0041 16.7 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 REase_AHJR-like DUF3883 PF13020.6 gi|88603028|ref|YP_503206.1| - 0.027 14.5 0.1 0.044 13.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) DUF3782 PF12644.7 gi|88603028|ref|YP_503206.1| - 0.028 14.6 0.3 0.05 13.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) NERD PF08378.11 gi|88603028|ref|YP_503206.1| - 0.18 12.3 1.8 0.32 11.5 0.5 2.1 1 1 1 2 2 2 0 Nuclease-related domain Usp PF00582.26 gi|88603029|ref|YP_503207.1| - 1.5e-32 113.0 0.7 2.6e-17 63.6 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family ATP-synt_D PF01813.17 gi|88603030|ref|YP_503208.1| - 1.4e-49 168.6 2.4 1.6e-49 168.4 2.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|88603031|ref|YP_503209.1| - 9.2e-69 231.3 0.0 1.2e-68 230.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|88603031|ref|YP_503209.1| - 1.1e-06 29.1 2.8 2.1e-06 28.1 2.8 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|88603031|ref|YP_503209.1| - 0.011 15.8 0.6 0.026 14.6 0.6 1.5 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|88603032|ref|YP_503210.1| - 3.3e-93 311.2 0.0 4.9e-93 310.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|88603032|ref|YP_503210.1| - 2.2e-41 140.5 0.0 3.5e-41 139.8 0.0 1.3 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|88603032|ref|YP_503210.1| - 1.8e-13 50.8 2.4 3.7e-13 49.8 2.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|88603032|ref|YP_503210.1| - 0.009 16.3 0.1 0.075 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATP-synt_F PF01990.17 gi|88603033|ref|YP_503211.1| - 3.4e-13 49.7 0.0 3.8e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|88603034|ref|YP_503212.1| - 3.4e-48 164.9 0.0 4.2e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit NETI PF14044.6 gi|88603034|ref|YP_503212.1| - 0.095 12.5 0.0 9.1 6.1 0.0 2.8 3 0 0 3 3 3 0 NETI protein vATP-synt_E PF01991.18 gi|88603035|ref|YP_503213.1| - 3.3e-21 75.6 7.3 5.5e-21 74.9 7.3 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Capsule_synth PF05159.14 gi|88603035|ref|YP_503213.1| - 0.023 14.2 0.1 0.039 13.4 0.1 1.4 1 1 0 1 1 1 0 Capsule polysaccharide biosynthesis protein Hydin_ADK PF17213.3 gi|88603035|ref|YP_503213.1| - 0.084 13.1 1.1 0.12 12.6 1.1 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain eIF3_subunit PF08597.10 gi|88603035|ref|YP_503213.1| - 3.2 7.6 0.0 3.2 7.6 0.0 2.0 1 1 1 2 2 2 0 Translation initiation factor eIF3 subunit ATP-synt_B PF00430.18 gi|88603035|ref|YP_503213.1| - 6.5 6.8 16.1 34 4.5 14.8 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) ATP-synt_C PF00137.21 gi|88603036|ref|YP_503214.1| - 5.1e-47 158.1 54.0 3.5e-16 59.3 9.2 3.2 3 0 0 3 3 3 3 ATP synthase subunit C Penaeidin PF05927.11 gi|88603036|ref|YP_503214.1| - 0.0013 19.4 0.5 0.17 12.7 0.0 2.7 2 1 1 3 3 3 2 Penaeidin V_ATPase_I PF01496.19 gi|88603037|ref|YP_503215.1| - 1.2e-21 76.4 4.0 1.6e-09 36.3 0.6 3.1 3 0 0 3 3 3 3 V-type ATPase 116kDa subunit family V-ATPase_G PF03179.15 gi|88603038|ref|YP_503216.1| - 3.5e-05 24.3 8.4 4.5e-05 23.9 8.4 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Phage_Mu_Gam PF07352.12 gi|88603038|ref|YP_503216.1| - 0.035 14.0 4.5 0.037 14.0 0.2 2.0 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein ATP-synt_B PF00430.18 gi|88603038|ref|YP_503216.1| - 0.11 12.6 15.9 0.053 13.6 12.4 1.9 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF5471 PF17565.2 gi|88603038|ref|YP_503216.1| - 0.14 12.5 4.1 0.15 12.4 0.1 2.5 1 1 2 3 3 3 0 Family of unknown function (DUF5471) V-ATPase_G_2 PF16999.5 gi|88603038|ref|YP_503216.1| - 0.43 11.0 17.0 0.58 10.6 17.0 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF362 PF04015.12 gi|88603039|ref|YP_503217.1| - 2.3e-45 155.3 0.2 3e-45 155.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|88603039|ref|YP_503217.1| - 8.1e-15 53.9 11.4 3.7e-09 36.0 2.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603039|ref|YP_503217.1| - 5.3e-11 42.9 34.0 1.1e-07 32.3 12.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603039|ref|YP_503217.1| - 1.9e-10 40.3 15.5 1.8e-06 27.7 3.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603039|ref|YP_503217.1| - 3.5e-10 39.9 9.4 8.1e-10 38.7 9.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603039|ref|YP_503217.1| - 1.3e-08 34.9 12.1 2.7e-08 33.8 12.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603039|ref|YP_503217.1| - 1.5e-08 35.5 7.6 0.0013 19.6 2.1 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|88603039|ref|YP_503217.1| - 1.9e-08 33.9 12.3 0.00022 21.1 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603039|ref|YP_503217.1| - 2.2e-08 34.1 10.5 9.4e-07 28.9 11.7 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|88603039|ref|YP_503217.1| - 0.00019 20.7 0.3 0.0003 20.0 0.3 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_3 PF12798.7 gi|88603039|ref|YP_503217.1| - 0.0002 22.1 18.6 0.048 14.6 5.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603039|ref|YP_503217.1| - 0.00022 22.0 9.7 0.018 15.9 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603039|ref|YP_503217.1| - 0.00026 21.4 8.6 0.19 12.2 3.0 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603039|ref|YP_503217.1| - 0.00042 21.0 6.2 0.34 11.7 0.6 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|88603039|ref|YP_503217.1| - 0.00088 19.8 11.8 0.05 14.2 1.9 2.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603039|ref|YP_503217.1| - 0.021 15.4 11.8 0.38 11.3 2.1 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|88603039|ref|YP_503217.1| - 0.034 14.7 14.1 0.042 14.4 4.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603039|ref|YP_503217.1| - 0.21 11.8 11.5 5.2 7.3 10.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Mem_trans PF03547.18 gi|88603040|ref|YP_503218.1| - 1.1e-33 116.2 37.3 3e-18 65.4 14.4 2.0 1 1 1 2 2 2 2 Membrane transport protein LemA PF04011.12 gi|88603041|ref|YP_503219.1| - 3.1e-39 134.2 0.1 3.6e-39 134.0 0.1 1.1 1 0 0 1 1 1 1 LemA family SKA2 PF16740.5 gi|88603041|ref|YP_503219.1| - 0.027 14.3 0.0 1.7 8.5 0.0 2.5 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 NolV PF06635.12 gi|88603041|ref|YP_503219.1| - 0.078 12.4 0.1 0.095 12.1 0.1 1.2 1 0 0 1 1 1 0 Nodulation protein NolV ADIP PF11559.8 gi|88603041|ref|YP_503219.1| - 0.13 12.4 0.0 0.2 11.7 0.0 1.4 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Ac76 PF05814.11 gi|88603041|ref|YP_503219.1| - 0.14 12.1 0.4 0.41 10.7 0.3 1.7 2 0 0 2 2 2 0 Orf76 (Ac76) DisA_N PF02457.16 gi|88603042|ref|YP_503220.1| - 2.5e-23 81.9 0.2 6.4e-23 80.6 0.4 1.6 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding TPR_1 PF00515.28 gi|88603042|ref|YP_503220.1| - 4.7e-11 42.0 2.6 3.5e-07 29.8 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603042|ref|YP_503220.1| - 2.6e-09 36.5 4.1 0.00013 21.8 0.3 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603042|ref|YP_503220.1| - 3.4e-07 30.8 1.3 6.1e-07 30.0 1.3 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603042|ref|YP_503220.1| - 9.6e-07 28.8 0.2 2.6e-06 27.4 0.2 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603042|ref|YP_503220.1| - 3.4e-06 26.8 3.4 0.04 14.1 0.1 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603042|ref|YP_503220.1| - 6.5e-06 26.4 0.3 0.0059 17.2 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603042|ref|YP_503220.1| - 8e-06 26.3 0.3 1.5e-05 25.4 0.3 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603042|ref|YP_503220.1| - 1.6e-05 25.4 0.7 0.0049 17.6 0.2 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603042|ref|YP_503220.1| - 1.8e-05 24.9 0.5 0.19 12.1 0.3 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603042|ref|YP_503220.1| - 5.3e-05 22.8 1.3 0.0001 21.9 0.6 1.9 1 1 0 1 1 1 1 TPR repeat TPR_7 PF13176.6 gi|88603042|ref|YP_503220.1| - 0.00087 19.2 1.3 2.1 8.6 0.1 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603042|ref|YP_503220.1| - 0.024 14.8 1.5 1.4 9.2 0.1 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603042|ref|YP_503220.1| - 0.15 12.1 0.1 0.27 11.3 0.1 1.4 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88603042|ref|YP_503220.1| - 0.24 10.3 0.0 0.34 9.8 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 SecD-TM1 PF13721.6 gi|88603042|ref|YP_503220.1| - 0.36 11.3 1.0 1.3 9.5 0.3 2.0 2 0 0 2 2 2 0 SecD export protein N-terminal TM region NosD PF05048.13 gi|88603043|ref|YP_503221.1| - 6.9e-51 172.8 27.3 2.3e-50 171.2 26.1 2.2 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|88603043|ref|YP_503221.1| - 1.9e-16 60.3 30.5 3.4e-12 46.5 12.8 2.8 2 1 1 3 3 3 2 Right handed beta helix region LAMTOR5 PF16672.5 gi|88603043|ref|YP_503221.1| - 0.061 13.3 0.2 0.19 11.6 0.2 2.0 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 Pectate_lyase_3 PF12708.7 gi|88603043|ref|YP_503221.1| - 0.22 11.4 16.8 0.038 13.8 7.6 3.0 2 1 2 4 4 4 0 Pectate lyase superfamily protein AP_endonuc_2 PF01261.24 gi|88603044|ref|YP_503222.1| - 4.9e-30 104.5 0.4 7.6e-30 103.9 0.4 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Aldedh PF00171.22 gi|88603045|ref|YP_503223.1| - 1.1e-159 531.9 0.0 1.3e-159 531.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|88603045|ref|YP_503223.1| - 0.098 12.1 0.0 0.25 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Glycos_transf_1 PF00534.20 gi|88603046|ref|YP_503224.1| - 3.7e-30 104.7 0.0 5.5e-30 104.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88603046|ref|YP_503224.1| - 5.7e-27 94.8 0.0 9.2e-27 94.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88603046|ref|YP_503224.1| - 1.2e-21 77.4 0.8 4e-21 75.7 0.8 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|88603046|ref|YP_503224.1| - 6.3e-14 52.3 0.5 1.6e-08 34.6 0.6 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|88603046|ref|YP_503224.1| - 2e-12 47.8 0.0 1.9e-11 44.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|88603046|ref|YP_503224.1| - 1.1e-06 28.9 0.0 2.4e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|88603046|ref|YP_503224.1| - 0.004 15.8 0.1 0.2 10.1 0.1 2.4 2 1 0 2 2 2 1 Glycogen synthase Chorismate_bind PF00425.18 gi|88603047|ref|YP_503225.1| - 1.3e-101 339.6 0.0 2.2e-101 338.8 0.0 1.4 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|88603047|ref|YP_503225.1| - 2.1e-27 96.0 0.0 2e-22 80.0 0.0 2.5 2 0 0 2 2 2 2 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|88603048|ref|YP_503226.1| - 2.1e-48 164.6 0.0 2.4e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88603048|ref|YP_503226.1| - 1.3e-10 41.4 0.4 6.8e-10 39.1 0.5 2.0 2 1 0 2 2 2 1 Peptidase C26 Glycos_transf_3 PF00591.21 gi|88603049|ref|YP_503227.1| - 2.4e-92 309.1 0.6 4.3e-92 308.3 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|88603049|ref|YP_503227.1| - 2.8e-19 68.7 1.1 2e-18 66.0 0.3 2.6 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain IGPS PF00218.21 gi|88603050|ref|YP_503228.1| - 2.2e-66 223.7 0.0 2.5e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PRAI PF00697.22 gi|88603051|ref|YP_503229.1| - 1.3e-20 74.0 0.0 1.4e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UPF0180 PF03698.13 gi|88603051|ref|YP_503229.1| - 0.013 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) TMP-TENI PF02581.17 gi|88603051|ref|YP_503229.1| - 0.048 13.0 0.0 0.087 12.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase PALP PF00291.25 gi|88603052|ref|YP_503230.1| - 2.1e-45 155.4 0.6 2.5e-45 155.1 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|88603053|ref|YP_503231.1| - 4.9e-87 291.0 0.2 5.7e-87 290.8 0.2 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|88603053|ref|YP_503231.1| - 8.7e-08 31.9 0.1 6.5e-07 29.0 0.0 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|88603053|ref|YP_503231.1| - 0.00031 20.3 0.1 0.0077 15.7 0.0 2.5 2 1 0 2 2 2 1 PcrB family NMO PF03060.15 gi|88603053|ref|YP_503231.1| - 0.0013 18.2 0.1 0.027 13.9 0.0 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|88603053|ref|YP_503231.1| - 0.0049 16.1 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|88603053|ref|YP_503231.1| - 0.0076 15.5 0.0 0.018 14.2 0.0 1.6 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase PA PF02225.22 gi|88603053|ref|YP_503231.1| - 0.0089 16.0 0.1 5.5 7.1 0.0 2.6 2 0 0 2 2 2 2 PA domain NanE PF04131.14 gi|88603053|ref|YP_503231.1| - 0.013 14.7 0.2 0.059 12.5 0.0 2.2 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.12 gi|88603053|ref|YP_503231.1| - 0.027 13.9 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator PAS_9 PF13426.7 gi|88603054|ref|YP_503232.1| - 3.1e-43 146.3 0.0 2e-12 47.3 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|88603054|ref|YP_503232.1| - 6.1e-41 139.0 0.0 5.2e-11 42.5 0.0 5.5 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|88603054|ref|YP_503232.1| - 2.6e-30 103.9 0.3 6.6e-09 35.6 0.0 5.1 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|88603054|ref|YP_503232.1| - 8.4e-30 103.3 0.0 1.7e-09 37.9 0.0 5.7 4 1 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|88603054|ref|YP_503232.1| - 5.8e-21 75.1 0.0 1.5e-20 73.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|88603054|ref|YP_503232.1| - 5.3e-19 68.5 0.0 2e-18 66.6 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|88603054|ref|YP_503232.1| - 6.5e-16 58.4 0.0 4.8e-06 26.8 0.0 5.5 5 1 0 5 5 5 3 PAS fold HATPase_c_5 PF14501.6 gi|88603054|ref|YP_503232.1| - 3.2e-08 33.4 0.0 1.1e-07 31.7 0.0 1.9 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|88603054|ref|YP_503232.1| - 1e-05 25.5 0.4 1e-05 25.5 0.4 4.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain ZNRF_3_ecto PF18212.1 gi|88603054|ref|YP_503232.1| - 0.001 19.0 0.7 7.5 6.6 0.0 4.1 4 0 0 4 4 4 1 ZNRF-3 Ectodomain HATPase_c_2 PF13581.6 gi|88603054|ref|YP_503232.1| - 0.002 18.1 0.0 0.006 16.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|88603054|ref|YP_503232.1| - 0.0065 16.6 0.0 0.34 11.0 0.0 3.5 4 0 0 4 4 4 1 MmyB-like transcription regulator ligand binding domain Phage_P2_GpU PF06995.11 gi|88603054|ref|YP_503232.1| - 0.023 14.3 0.0 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 Phage P2 GpU PI3K_P85_iSH2 PF16454.5 gi|88603054|ref|YP_503232.1| - 0.74 9.4 10.0 3.8 7.1 0.5 3.1 3 0 0 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TPR_1 PF00515.28 gi|88603055|ref|YP_503233.1| - 6e-41 136.6 11.5 7e-10 38.3 0.1 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603055|ref|YP_503233.1| - 5.2e-35 116.7 12.6 6.1e-08 32.2 0.2 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603055|ref|YP_503233.1| - 1.6e-29 101.3 11.9 1.4e-07 31.1 0.2 5.1 2 2 3 5 5 5 5 TPR repeat TPR_8 PF13181.6 gi|88603055|ref|YP_503233.1| - 7.9e-26 88.1 9.6 4e-06 26.6 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603055|ref|YP_503233.1| - 1.1e-23 83.6 8.9 1.4e-09 38.4 0.1 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603055|ref|YP_503233.1| - 3.6e-23 81.7 9.4 5.5e-09 36.2 0.3 3.5 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603055|ref|YP_503233.1| - 2.8e-21 74.3 9.6 0.00037 20.7 0.1 5.3 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603055|ref|YP_503233.1| - 1.9e-19 69.9 8.9 2.3e-09 37.6 0.9 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603055|ref|YP_503233.1| - 4.9e-19 67.4 11.8 0.003 18.2 0.0 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603055|ref|YP_503233.1| - 1.1e-16 60.8 3.9 9.7e-07 28.9 0.5 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88603055|ref|YP_503233.1| - 2.2e-14 52.8 9.4 0.0023 17.7 0.1 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603055|ref|YP_503233.1| - 6.8e-13 47.7 7.1 0.0025 17.7 0.0 5.1 4 1 1 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603055|ref|YP_503233.1| - 4.2e-10 39.7 2.2 3.7e-08 33.5 0.1 2.6 1 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|88603055|ref|YP_503233.1| - 1.1e-08 34.9 7.7 0.023 15.3 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat BTAD PF03704.17 gi|88603055|ref|YP_503233.1| - 2.9e-07 31.0 0.9 0.00034 21.1 0.0 2.5 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_6 PF13174.6 gi|88603055|ref|YP_503233.1| - 3e-07 30.6 5.4 3.8 8.3 0.0 5.3 5 0 0 5 5 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603055|ref|YP_503233.1| - 8.3e-07 29.0 2.3 0.79 9.8 0.0 4.4 5 0 0 5 5 4 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88603055|ref|YP_503233.1| - 4e-06 26.0 0.3 0.016 14.1 0.1 2.6 1 1 1 3 3 3 2 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|88603055|ref|YP_503233.1| - 1.7e-05 24.9 2.1 7.1 6.7 0.0 4.4 2 2 1 4 4 4 0 Domain of Unknown Function (DUF3856) SRP_TPR_like PF17004.5 gi|88603055|ref|YP_503233.1| - 3.2e-05 23.9 0.3 0.03 14.3 0.0 3.2 1 1 2 3 3 3 1 Putative TPR-like repeat TPR_3 PF07720.12 gi|88603055|ref|YP_503233.1| - 3.4e-05 23.7 1.3 0.1 12.6 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat DUF5113 PF17140.4 gi|88603055|ref|YP_503233.1| - 3.6e-05 23.6 6.2 0.28 11.0 0.1 4.5 1 1 5 6 6 6 2 Domain of unknown function (DUF5113) TPR_21 PF09976.9 gi|88603055|ref|YP_503233.1| - 0.00045 20.0 2.6 0.17 11.6 0.3 2.4 2 1 0 2 2 2 2 Tetratricopeptide repeat-like domain NRBF2_MIT PF17169.4 gi|88603055|ref|YP_503233.1| - 0.00051 20.2 1.4 7.1 6.9 0.1 4.2 2 2 2 4 4 4 0 MIT domain of nuclear receptor-binding factor 2 Alkyl_sulf_dimr PF14863.6 gi|88603055|ref|YP_503233.1| - 0.0012 19.3 0.6 0.04 14.4 0.1 2.6 2 1 1 3 3 3 1 Alkyl sulfatase dimerisation TPR_15 PF13429.6 gi|88603055|ref|YP_503233.1| - 0.0018 17.5 2.6 0.0043 16.3 2.6 1.7 1 1 0 1 1 1 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88603055|ref|YP_503233.1| - 0.0044 16.5 0.0 1.8 7.9 0.0 2.3 1 1 1 2 2 2 2 Coatomer epsilon subunit PPR PF01535.20 gi|88603055|ref|YP_503233.1| - 0.03 14.6 2.5 6 7.4 0.0 4.5 6 0 0 6 6 5 0 PPR repeat TPR_20 PF14561.6 gi|88603055|ref|YP_503233.1| - 0.059 13.7 0.6 1.5 9.2 0.1 2.8 1 1 1 2 2 2 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|88603055|ref|YP_503233.1| - 0.12 12.3 1.5 11 5.8 0.1 2.8 1 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal Desmo_N PF06771.11 gi|88603055|ref|YP_503233.1| - 0.18 12.2 0.0 1.3 9.4 0.0 2.2 1 1 2 3 3 3 0 Viral Desmoplakin N-terminus MIT PF04212.18 gi|88603055|ref|YP_503233.1| - 1.1 9.3 9.2 57 3.9 0.0 4.4 4 1 1 5 5 5 0 MIT (microtubule interacting and transport) domain T6_Ig_like PF18002.1 gi|88603056|ref|YP_503234.1| - 0.0039 17.1 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 T6 antigen Ig like domain Thymidylat_synt PF00303.19 gi|88603057|ref|YP_503235.1| - 3.7e-13 49.2 0.0 4e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase AAA_15 PF13175.6 gi|88603058|ref|YP_503236.1| - 5e-22 79.1 0.0 2.1e-11 44.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|88603058|ref|YP_503236.1| - 5.7e-15 55.9 2.0 5.6e-10 39.5 0.3 3.1 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603058|ref|YP_503236.1| - 0.00025 20.6 0.0 0.18 11.2 0.0 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|88603058|ref|YP_503236.1| - 0.001 18.4 0.0 0.83 8.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|88603058|ref|YP_503236.1| - 0.0049 17.4 0.0 0.0098 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88603058|ref|YP_503236.1| - 0.027 14.2 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|88603058|ref|YP_503236.1| - 0.057 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|88603058|ref|YP_503236.1| - 0.075 13.5 0.0 0.77 10.3 0.0 2.5 3 0 0 3 3 3 0 ABC transporter Iso_dh PF00180.20 gi|88603059|ref|YP_503237.1| - 7.3e-91 304.9 0.0 5.8e-90 301.9 0.0 1.9 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Flavodoxin_3 PF12641.7 gi|88603059|ref|YP_503237.1| - 0.17 11.5 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain Aconitase_C PF00694.19 gi|88603061|ref|YP_503239.1| - 4e-17 62.8 0.0 4.9e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|88603061|ref|YP_503239.1| - 0.047 13.3 0.0 1.4 8.5 0.0 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Aconitase PF00330.20 gi|88603062|ref|YP_503240.1| - 1.2e-84 285.0 3.0 3e-82 277.1 3.0 2.6 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Lipase_GDSL_2 PF13472.6 gi|88603062|ref|YP_503240.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family HMGL-like PF00682.19 gi|88603063|ref|YP_503241.1| - 3.8e-75 252.9 0.2 4.8e-75 252.5 0.2 1.1 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_C PF02775.21 gi|88603064|ref|YP_503242.1| - 4.5e-09 36.3 0.1 1.2e-08 34.9 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|88603064|ref|YP_503242.1| - 0.12 12.0 0.6 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Radical_SAM PF04055.21 gi|88603065|ref|YP_503243.1| - 3e-11 44.0 0.0 5.8e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF1743 PF08489.11 gi|88603066|ref|YP_503244.1| - 1.9e-08 34.3 0.1 7.1e-06 26.1 0.0 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) DUF262 PF03235.14 gi|88603067|ref|YP_503245.1| - 6.8e-34 118.0 0.9 6.8e-34 118.0 0.9 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|88603067|ref|YP_503245.1| - 2.4e-26 92.3 0.0 4e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) DUF829 PF05705.14 gi|88603067|ref|YP_503245.1| - 0.023 14.6 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) Rubrerythrin PF02915.17 gi|88603068|ref|YP_503246.1| - 2.9e-20 73.1 8.0 3.3e-20 72.9 8.0 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|88603068|ref|YP_503246.1| - 1.3e-07 31.9 3.3 2.9e-05 24.4 0.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|88603068|ref|YP_503246.1| - 3.6e-06 27.0 2.9 5e-06 26.5 2.9 1.2 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|88603068|ref|YP_503246.1| - 3.4e-05 24.1 4.0 0.00022 21.4 3.8 1.9 1 1 0 1 1 1 1 Ferritin-like domain Ald_deCOase PF11266.8 gi|88603068|ref|YP_503246.1| - 0.0065 16.2 2.4 0.71 9.5 0.2 2.1 2 0 0 2 2 2 2 Long-chain fatty aldehyde decarbonylase DUF892 PF05974.12 gi|88603068|ref|YP_503246.1| - 0.018 15.0 6.6 0.18 11.8 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) DUF1657 PF07870.11 gi|88603068|ref|YP_503246.1| - 0.038 13.9 4.6 0.2 11.6 0.9 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1657) Rbsn PF11464.8 gi|88603068|ref|YP_503246.1| - 0.048 13.4 1.0 0.15 11.8 0.0 2.3 2 0 0 2 2 2 0 Rabenosyn Rab binding domain PurL_C PF16904.5 gi|88603068|ref|YP_503246.1| - 0.064 13.6 0.3 1.5 9.2 0.0 2.5 2 1 1 3 3 3 0 Phosphoribosylformylglycinamidine synthase II C-terminus Vir_act_alpha_C PF10400.9 gi|88603068|ref|YP_503246.1| - 8.5 7.1 7.1 7.2 7.4 1.1 2.5 2 1 1 3 3 3 0 Virulence activator alpha C-term FTR_C PF02741.15 gi|88603069|ref|YP_503247.1| - 1.4e-62 210.1 2.6 1.4e-62 210.1 2.6 1.8 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|88603069|ref|YP_503247.1| - 2.4e-58 196.1 1.2 6.9e-58 194.6 0.2 2.1 3 0 0 3 3 3 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase zf-ISL3 PF14690.6 gi|88603070|ref|YP_503248.1| - 0.0023 18.5 1.0 0.0049 17.5 1.0 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CxC3 PF18804.1 gi|88603070|ref|YP_503248.1| - 0.023 14.5 0.2 0.035 13.9 0.2 1.3 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases FYVE PF01363.21 gi|88603070|ref|YP_503248.1| - 0.074 13.2 1.8 0.12 12.5 1.8 1.7 1 1 0 1 1 1 0 FYVE zinc finger Lar_restr_allev PF14354.6 gi|88603070|ref|YP_503248.1| - 0.084 13.3 1.0 0.15 12.5 1.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar EptA_B_N PF08019.12 gi|88603070|ref|YP_503248.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoethanolamine transferase EptA/EptB Form_Nir_trans PF01226.17 gi|88603072|ref|YP_503250.1| - 4.8e-74 248.7 36.6 5.4e-74 248.5 36.6 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter tRNA_anti-codon PF01336.25 gi|88603073|ref|YP_503251.1| - 0.00097 19.1 0.4 0.0016 18.4 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Exosortase_EpsH PF09721.10 gi|88603073|ref|YP_503251.1| - 0.14 11.6 2.8 0.18 11.3 2.8 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) Molybdopterin PF00384.22 gi|88603074|ref|YP_503252.1| - 3.3e-94 316.3 0.1 4e-94 316.0 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|88603074|ref|YP_503252.1| - 5.4e-31 106.9 0.0 1e-30 106.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|88603074|ref|YP_503252.1| - 2.3e-19 69.1 1.1 2.3e-19 69.1 1.1 1.8 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain DUF4358 PF14270.6 gi|88603074|ref|YP_503252.1| - 0.0051 17.1 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4358) FrhB_FdhB_C PF04432.13 gi|88603075|ref|YP_503253.1| - 2.2e-36 125.0 0.9 2.2e-36 125.0 0.9 2.0 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88603075|ref|YP_503253.1| - 3.2e-22 78.4 0.0 6.4e-22 77.5 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|88603075|ref|YP_503253.1| - 8.8e-05 23.0 14.1 8.8e-05 23.0 14.1 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603075|ref|YP_503253.1| - 0.00039 20.1 13.9 0.0035 17.1 4.5 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603075|ref|YP_503253.1| - 0.00077 19.6 15.5 0.00077 19.6 15.5 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603075|ref|YP_503253.1| - 0.021 15.4 21.6 0.058 14.0 1.4 3.3 3 1 2 5 5 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603075|ref|YP_503253.1| - 0.025 14.7 1.8 0.025 14.7 1.8 4.3 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603075|ref|YP_503253.1| - 0.046 13.8 1.2 0.046 13.8 1.2 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603075|ref|YP_503253.1| - 0.15 12.2 12.3 0.91 9.7 1.5 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603075|ref|YP_503253.1| - 0.16 12.1 22.0 0.14 12.3 1.7 3.5 4 0 0 4 4 4 0 4Fe-4S dicluster domain DEK_C PF08766.11 gi|88603075|ref|YP_503253.1| - 0.16 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 DEK C terminal domain Fer4_8 PF13183.6 gi|88603075|ref|YP_503253.1| - 0.49 10.9 24.2 1 9.9 19.8 3.3 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603075|ref|YP_503253.1| - 1.7 9.6 17.2 3 8.8 0.2 3.9 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88603075|ref|YP_503253.1| - 5.2 7.3 29.0 0.38 10.9 2.4 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 gi|88603075|ref|YP_503253.1| - 7.9 6.8 11.5 6.4 7.1 0.3 3.0 2 1 0 2 2 2 0 c-SKI Smad4 binding domain CTP_transf_1 PF01148.20 gi|88603076|ref|YP_503254.1| - 0.0024 17.7 13.3 0.0045 16.8 13.3 1.5 1 1 0 1 1 1 1 Cytidylyltransferase family DEAD PF00270.29 gi|88603077|ref|YP_503255.1| - 6.5e-48 162.8 0.0 1.2e-47 162.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|88603077|ref|YP_503255.1| - 7.2e-32 110.0 0.1 1.9e-28 99.0 0.0 2.8 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DbpA PF03880.15 gi|88603077|ref|YP_503255.1| - 5.8e-12 45.4 1.1 5.8e-12 45.4 1.1 2.1 2 0 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.15 gi|88603077|ref|YP_503255.1| - 1.4e-05 25.1 0.0 2.7e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|88603077|ref|YP_503255.1| - 0.0088 15.9 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Helicase CMS1 PF14617.6 gi|88603077|ref|YP_503255.1| - 0.034 13.5 0.1 0.078 12.3 0.0 1.6 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit Flavi_DEAD PF07652.14 gi|88603077|ref|YP_503255.1| - 0.091 12.7 0.0 2.1 8.3 0.0 2.8 3 0 0 3 3 3 0 Flavivirus DEAD domain Oxidored_q6 PF01058.22 gi|88603078|ref|YP_503256.1| - 4.1e-21 75.2 0.1 5e-21 74.9 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Luciferase_cat PF10285.9 gi|88603078|ref|YP_503256.1| - 0.089 12.2 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Luciferase catalytic domain Complex1_49kDa PF00346.19 gi|88603079|ref|YP_503257.1| - 1.5e-34 119.4 0.0 5.8e-27 94.5 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|88603079|ref|YP_503257.1| - 3.5e-13 50.3 0.0 6.5e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Proton_antipo_M PF00361.20 gi|88603080|ref|YP_503258.1| - 5.8e-45 153.7 30.0 5.8e-45 153.7 30.0 2.8 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|88603080|ref|YP_503258.1| - 0.0036 17.3 0.4 0.025 14.7 0.4 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.21 gi|88603082|ref|YP_503260.1| - 5.5e-36 124.4 26.0 6.8e-36 124.1 26.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|88603083|ref|YP_503261.1| - 6.7e-50 169.9 27.2 6.7e-50 169.9 27.2 2.5 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|88603083|ref|YP_503261.1| - 8.3e-05 22.6 0.0 8.3e-05 22.6 0.0 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YAcAr PF10686.9 gi|88603084|ref|YP_503262.1| - 7.8e-11 41.8 0.0 1.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 YspA, cpYpsA-related SLOG family YpsA PF06908.11 gi|88603084|ref|YP_503262.1| - 0.0031 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 YspA SLOG family cpYpsA PF12694.7 gi|88603084|ref|YP_503262.1| - 0.038 13.8 0.0 0.32 10.8 0.0 2.2 2 1 0 2 2 2 0 Circularly permutated YpsA SLOG family DUF1890 PF09001.11 gi|88603084|ref|YP_503262.1| - 0.14 12.5 0.1 2.4 8.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Pro_CA PF00484.19 gi|88603085|ref|YP_503263.1| - 5.6e-47 159.9 0.0 6.8e-47 159.7 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Molydop_binding PF01568.21 gi|88603086|ref|YP_503264.1| - 4.7e-06 26.6 0.1 0.0022 18.0 0.0 2.6 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain TrkA_C PF02080.21 gi|88603086|ref|YP_503264.1| - 6e-06 26.0 0.3 2.7e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain Apolipoprotein PF01442.18 gi|88603086|ref|YP_503264.1| - 0.00044 20.2 0.5 0.00072 19.5 0.5 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain CDC48_N PF02359.18 gi|88603086|ref|YP_503264.1| - 0.0036 17.4 0.0 0.0072 16.5 0.0 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Uso1_p115_C PF04871.13 gi|88603086|ref|YP_503264.1| - 0.043 14.2 2.0 0.064 13.6 2.0 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region ApoLp-III PF07464.11 gi|88603086|ref|YP_503264.1| - 0.048 13.7 2.8 0.12 12.4 2.8 1.6 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) YtxH PF12732.7 gi|88603086|ref|YP_503264.1| - 0.082 13.5 6.3 0.35 11.4 6.3 2.0 1 1 0 1 1 1 0 YtxH-like protein DUF883 PF05957.13 gi|88603086|ref|YP_503264.1| - 0.69 10.5 3.9 2.5 8.8 2.7 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Adhesin_P1_N PF18652.1 gi|88603086|ref|YP_503264.1| - 1.2 9.2 8.1 3.7 7.6 4.8 2.6 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain Phasin PF05597.11 gi|88603088|ref|YP_503266.1| - 0.098 12.7 0.0 0.28 11.2 0.0 1.7 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Tropomyosin PF00261.20 gi|88603089|ref|YP_503267.1| - 0.00065 19.1 1.7 0.00069 19.1 1.7 1.1 1 0 0 1 1 1 1 Tropomyosin DUF3450 PF11932.8 gi|88603089|ref|YP_503267.1| - 0.0035 16.7 1.8 0.0038 16.6 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Vac_Fusion PF02346.16 gi|88603089|ref|YP_503267.1| - 0.0067 16.0 3.0 0.012 15.2 3.0 1.3 1 0 0 1 1 1 1 Chordopoxvirus multifunctional envelope protein A27 DUF2968 PF11180.8 gi|88603089|ref|YP_503267.1| - 0.011 15.4 1.4 0.011 15.3 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF4164 PF13747.6 gi|88603089|ref|YP_503267.1| - 0.013 15.7 2.8 0.017 15.4 2.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) ZapB PF06005.12 gi|88603089|ref|YP_503267.1| - 0.058 13.8 2.5 0.082 13.4 2.5 1.3 1 0 0 1 1 1 0 Cell division protein ZapB DivIC PF04977.15 gi|88603089|ref|YP_503267.1| - 0.1 12.4 2.0 0.18 11.6 2.1 1.4 1 1 0 1 1 1 0 Septum formation initiator TMPIT PF07851.13 gi|88603089|ref|YP_503267.1| - 0.12 11.6 0.9 0.13 11.5 0.9 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF1515 PF07439.11 gi|88603089|ref|YP_503267.1| - 0.38 10.8 3.1 0.43 10.6 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF2721 PF11026.8 gi|88603089|ref|YP_503267.1| - 4.3 7.2 7.6 3.3 7.6 5.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DUF3139 PF11337.8 gi|88603090|ref|YP_503268.1| - 0.053 14.2 0.0 0.056 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Pex24p PF06398.11 gi|88603090|ref|YP_503268.1| - 0.1 11.6 0.0 0.11 11.5 0.0 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin PspB PF06667.12 gi|88603090|ref|YP_503268.1| - 0.84 9.7 4.5 8.8 6.5 0.4 2.3 2 0 0 2 2 2 0 Phage shock protein B ODV-E18 PF10717.9 gi|88603090|ref|YP_503268.1| - 0.97 9.4 2.6 1.6 8.7 2.6 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 FtsH_ext PF06480.15 gi|88603090|ref|YP_503268.1| - 2 8.8 5.2 2.8 8.3 5.2 1.7 1 1 0 1 1 1 0 FtsH Extracellular Prok-RING_2 PF14445.6 gi|88603091|ref|YP_503269.1| - 3.1e-35 120.1 10.3 3.8e-35 119.8 10.3 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 2 zf-CCHC_2 PF13696.6 gi|88603091|ref|YP_503269.1| - 0.26 11.2 11.8 0.45 10.4 0.1 3.2 3 0 0 3 3 3 0 Zinc knuckle FYVE_2 PF02318.16 gi|88603091|ref|YP_503269.1| - 1.2 9.4 7.1 1.9 8.7 7.1 1.4 1 1 0 1 1 1 0 FYVE-type zinc finger FYVE PF01363.21 gi|88603091|ref|YP_503269.1| - 1.2 9.3 9.7 15 5.8 10.0 2.2 1 1 0 1 1 1 0 FYVE zinc finger Nudix_N_2 PF14803.6 gi|88603091|ref|YP_503269.1| - 2 8.4 8.2 2.4 8.2 0.1 3.2 3 1 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|88603092|ref|YP_503270.1| - 0.0027 17.7 2.4 0.0069 16.3 2.4 1.7 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|88603092|ref|YP_503270.1| - 0.0048 17.2 0.3 0.0089 16.4 0.3 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|88603092|ref|YP_503270.1| - 0.014 16.1 4.2 0.033 14.8 4.2 1.7 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.12 gi|88603092|ref|YP_503270.1| - 0.023 14.7 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|88603092|ref|YP_503270.1| - 0.033 14.3 2.4 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|88603092|ref|YP_503270.1| - 0.041 14.1 0.3 6.3 7.1 0.0 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain tRNA_anti-codon PF01336.25 gi|88603092|ref|YP_503270.1| - 0.074 13.1 0.0 10 6.2 0.0 2.3 2 1 0 2 2 2 0 OB-fold nucleic acid binding domain zf-TFIIB PF13453.6 gi|88603092|ref|YP_503270.1| - 0.41 10.0 2.5 0.76 9.2 0.1 2.4 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-RRN7 PF11781.8 gi|88603092|ref|YP_503270.1| - 0.51 10.1 5.5 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|88603092|ref|YP_503270.1| - 0.91 9.5 4.9 9.7 6.2 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.7 gi|88603092|ref|YP_503270.1| - 1 9.8 5.8 5.4 7.5 5.8 2.1 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 FrhB_FdhB_C PF04432.13 gi|88603093|ref|YP_503271.1| - 5.5e-26 91.3 0.1 5.5e-26 91.3 0.1 1.9 2 1 1 3 3 3 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88603093|ref|YP_503271.1| - 5.3e-18 64.9 0.0 9.9e-18 64.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.7 gi|88603093|ref|YP_503271.1| - 7e-10 39.3 0.0 0.00027 21.5 0.0 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603093|ref|YP_503271.1| - 0.00029 20.9 15.1 0.00029 20.9 15.1 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603093|ref|YP_503271.1| - 0.00047 19.9 17.9 0.0027 17.4 2.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88603093|ref|YP_503271.1| - 0.0013 19.2 17.9 0.0013 19.2 17.9 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603093|ref|YP_503271.1| - 0.033 14.3 1.7 0.033 14.3 1.7 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603093|ref|YP_503271.1| - 0.041 14.3 22.9 0.066 13.7 2.0 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603093|ref|YP_503271.1| - 0.047 13.8 26.9 0.25 11.5 22.1 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88603093|ref|YP_503271.1| - 0.51 11.2 23.3 0.19 12.6 7.9 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|88603094|ref|YP_503272.1| - 3.4e-73 247.1 0.0 4.5e-73 246.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|88603094|ref|YP_503272.1| - 9.4e-23 80.4 0.0 1.2e-21 76.8 0.0 2.5 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|88603094|ref|YP_503272.1| - 3e-17 62.3 2.4 7.8e-17 61.0 2.4 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain HTH_49 PF18010.1 gi|88603094|ref|YP_503272.1| - 0.0057 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 Cry35Ab1 HTH C-terminal domain Fer4 PF00037.27 gi|88603095|ref|YP_503273.1| - 2.2e-16 58.9 14.2 8.5e-09 34.9 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603095|ref|YP_503273.1| - 2.6e-14 53.6 20.8 5.6e-11 42.8 11.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603095|ref|YP_503273.1| - 1.5e-12 47.0 15.4 6.1e-07 29.3 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603095|ref|YP_503273.1| - 1.2e-11 44.6 7.7 6.3e-06 26.2 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603095|ref|YP_503273.1| - 4e-11 42.9 4.8 7.5e-11 42.0 4.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603095|ref|YP_503273.1| - 9.1e-11 41.2 13.2 1.8e-05 24.5 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603095|ref|YP_503273.1| - 1.2e-10 41.4 19.8 4.1e-09 36.4 10.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603095|ref|YP_503273.1| - 1.3e-10 42.1 7.3 2.5e-10 41.1 7.5 1.4 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88603095|ref|YP_503273.1| - 5.9e-08 33.1 19.1 4.6e-06 27.1 9.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603095|ref|YP_503273.1| - 9e-08 32.1 11.2 0.0012 19.2 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603095|ref|YP_503273.1| - 9.7e-06 25.9 10.4 0.0012 19.3 12.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603095|ref|YP_503273.1| - 1e-05 26.1 6.8 0.014 16.1 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|88603095|ref|YP_503273.1| - 1.2e-05 26.0 4.1 0.077 13.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603095|ref|YP_503273.1| - 8.4e-05 23.2 20.6 0.007 17.2 8.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88603095|ref|YP_503273.1| - 0.02 15.4 13.6 0.54 10.8 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|88603095|ref|YP_503273.1| - 0.7 10.1 13.2 2.7 8.2 2.1 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|88603095|ref|YP_503273.1| - 1.1 9.4 6.3 7.6 6.7 0.5 2.3 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.27 gi|88603096|ref|YP_503274.1| - 3.7e-41 137.3 93.4 2.4e-07 30.3 3.7 8.5 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603096|ref|YP_503274.1| - 2.6e-32 111.2 60.9 1.4e-09 38.4 7.9 4.7 3 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603096|ref|YP_503274.1| - 1.1e-26 92.7 63.7 1.3e-07 31.7 7.6 6.4 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603096|ref|YP_503274.1| - 2e-26 92.7 60.2 1.6e-05 25.7 7.6 7.1 4 2 3 7 7 7 7 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88603096|ref|YP_503274.1| - 1.6e-25 89.0 60.1 5.1e-08 33.0 5.7 5.7 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603096|ref|YP_503274.1| - 3e-24 84.9 69.4 1.8e-06 28.0 11.5 6.8 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603096|ref|YP_503274.1| - 1e-23 82.3 90.8 3.3e-05 23.8 3.2 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88603096|ref|YP_503274.1| - 9.7e-22 75.7 80.2 4.5e-05 23.3 2.9 8.2 8 0 0 8 8 7 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603096|ref|YP_503274.1| - 1.4e-16 60.6 53.0 8.6e-05 22.9 6.5 6.6 5 2 2 7 7 7 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603096|ref|YP_503274.1| - 9.9e-12 45.2 60.5 0.001 19.6 6.3 6.5 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603096|ref|YP_503274.1| - 4e-07 30.7 60.2 0.095 13.5 1.1 8.5 7 2 1 8 8 8 5 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|88603096|ref|YP_503274.1| - 5e-05 23.5 74.4 0.0062 17.0 0.8 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603096|ref|YP_503274.1| - 0.0014 19.4 53.8 0.037 14.9 0.1 8.1 7 1 1 8 8 8 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603096|ref|YP_503274.1| - 0.009 16.9 3.4 0.009 16.9 3.4 8.4 8 0 0 8 8 7 4 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88603096|ref|YP_503274.1| - 0.073 13.6 87.4 0.11 13.0 2.1 8.5 7 1 0 7 7 6 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|88603097|ref|YP_503275.1| - 1.8e-08 34.7 9.6 3.4e-08 33.8 9.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603097|ref|YP_503275.1| - 2.7e-07 30.7 11.0 3.5e-06 27.1 12.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603097|ref|YP_503275.1| - 2.2e-06 28.1 9.0 4.9e-06 27.0 9.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603097|ref|YP_503275.1| - 1.2e-05 26.1 2.8 0.13 13.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88603097|ref|YP_503275.1| - 0.00018 21.6 13.6 0.0024 17.9 14.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603097|ref|YP_503275.1| - 0.00036 20.8 10.1 0.18 12.4 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|88603097|ref|YP_503275.1| - 0.003 17.3 11.2 0.22 11.4 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603097|ref|YP_503275.1| - 0.0031 18.0 14.0 0.11 13.1 14.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603097|ref|YP_503275.1| - 0.0048 16.9 14.8 0.13 12.4 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain V_ATPase_I PF01496.19 gi|88603097|ref|YP_503275.1| - 0.11 10.4 0.0 0.16 9.9 0.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fer4_3 PF12798.7 gi|88603097|ref|YP_503275.1| - 0.24 12.4 14.5 0.38 11.8 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603097|ref|YP_503275.1| - 0.59 10.3 11.0 3.8 7.7 11.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603097|ref|YP_503275.1| - 5.9 7.1 11.4 4.2 7.6 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|88603098|ref|YP_503276.1| - 1.2e-31 108.7 1.9 6.9e-18 64.6 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Pyr_redox_2 PF07992.14 gi|88603099|ref|YP_503277.1| - 2.7e-17 62.9 0.0 2.5e-16 59.8 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|88603099|ref|YP_503277.1| - 1.2e-14 53.4 41.1 0.00017 21.3 2.0 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603099|ref|YP_503277.1| - 5.9e-13 48.8 24.6 2.5e-07 30.7 7.1 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603099|ref|YP_503277.1| - 8.4e-13 48.7 28.6 3.2e-07 30.9 8.9 3.3 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603099|ref|YP_503277.1| - 5.5e-12 45.6 29.0 1.3e-06 28.4 8.6 4.1 4 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603099|ref|YP_503277.1| - 6.3e-11 43.1 17.4 0.071 14.1 1.1 4.8 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|88603099|ref|YP_503277.1| - 5e-09 35.9 34.3 0.0061 16.6 2.7 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|88603099|ref|YP_503277.1| - 9e-08 31.9 0.7 2.1e-07 30.7 0.4 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_10 PF13237.6 gi|88603099|ref|YP_503277.1| - 9.3e-08 32.1 31.9 0.0062 16.6 11.9 4.2 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603099|ref|YP_503277.1| - 8.2e-06 26.2 24.7 0.0015 18.9 8.9 4.0 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603099|ref|YP_503277.1| - 1.1e-05 25.8 4.0 1.1e-05 25.8 4.0 4.3 4 1 3 7 7 6 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|88603099|ref|YP_503277.1| - 1.4e-05 24.4 0.5 2.7e-05 23.5 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|88603099|ref|YP_503277.1| - 1.5e-05 24.3 0.0 2.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|88603099|ref|YP_503277.1| - 2e-05 24.7 0.0 2e-05 24.7 0.0 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Fer4_2 PF12797.7 gi|88603099|ref|YP_503277.1| - 4.8e-05 23.2 45.8 0.025 14.7 2.7 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Pyr_redox PF00070.27 gi|88603099|ref|YP_503277.1| - 0.00025 21.6 0.2 0.00025 21.6 0.2 2.5 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|88603099|ref|YP_503277.1| - 0.00071 18.9 1.2 0.0017 17.7 0.5 1.8 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|88603099|ref|YP_503277.1| - 0.0021 16.8 0.7 0.0036 16.1 0.7 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_13 PF13370.6 gi|88603099|ref|YP_503277.1| - 0.0023 18.5 25.1 0.7 10.5 1.3 4.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Thi4 PF01946.17 gi|88603099|ref|YP_503277.1| - 0.0035 16.6 0.0 0.0077 15.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_22 PF17179.4 gi|88603099|ref|YP_503277.1| - 0.0043 17.9 22.2 2.2 9.2 0.3 4.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain DAO PF01266.24 gi|88603099|ref|YP_503277.1| - 0.0058 16.3 0.6 0.0058 16.3 0.6 2.6 3 0 0 3 3 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|88603099|ref|YP_503277.1| - 0.0068 15.7 0.1 0.014 14.7 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|88603099|ref|YP_503277.1| - 0.0094 15.2 1.1 0.045 13.0 0.5 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|88603099|ref|YP_503277.1| - 0.035 13.2 0.1 1.3 8.0 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|88603099|ref|YP_503277.1| - 0.035 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Fer4_4 PF12800.7 gi|88603099|ref|YP_503277.1| - 0.076 13.6 44.0 0.11 13.0 1.9 5.5 6 0 0 6 6 4 0 4Fe-4S binding domain FlpD PF02662.16 gi|88603100|ref|YP_503278.1| - 5.9e-50 168.4 0.1 6.6e-50 168.2 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FlpD PF02662.16 gi|88603101|ref|YP_503279.1| - 4.5e-50 168.8 0.1 5.1e-50 168.6 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit MCPsignal PF00015.21 gi|88603103|ref|YP_503281.1| - 1.3e-43 148.8 58.0 6e-42 143.4 21.2 5.0 3 1 4 7 7 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 gi|88603103|ref|YP_503281.1| - 1.8e-39 135.2 3.1 1.8e-39 135.2 3.1 4.0 4 1 0 5 5 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 gi|88603103|ref|YP_503281.1| - 4.8e-11 42.9 11.8 6.9e-09 36.0 0.1 6.6 7 0 0 7 7 7 1 HAMP domain TarH PF02203.15 gi|88603103|ref|YP_503281.1| - 4.2e-06 26.8 0.3 4.2e-06 26.8 0.3 3.9 5 0 0 5 5 4 1 Tar ligand binding domain homologue Flagellin_IN PF07196.13 gi|88603103|ref|YP_503281.1| - 0.014 15.6 0.2 5.6 7.2 0.0 3.8 2 1 1 3 3 3 0 Flagellin hook IN motif HATPase_c_4 PF13749.6 gi|88603103|ref|YP_503281.1| - 0.06 13.5 1.0 0.25 11.5 0.1 2.4 2 0 0 2 2 2 0 Putative ATP-dependent DNA helicase recG C-terminal Glycophorin_A PF01102.18 gi|88603103|ref|YP_503281.1| - 0.082 13.2 0.1 0.082 13.2 0.1 3.0 3 0 0 3 3 2 0 Glycophorin A HAMP_N3 PF18575.1 gi|88603103|ref|YP_503281.1| - 0.26 10.9 4.9 7.9 6.1 0.0 4.9 6 0 0 6 6 6 0 HAMP N-terminal domain 3 AI-2E_transport PF01594.16 gi|88603103|ref|YP_503281.1| - 0.4 9.8 5.6 2.4 7.2 0.0 3.1 3 1 0 3 3 3 0 AI-2E family transporter TMPIT PF07851.13 gi|88603103|ref|YP_503281.1| - 0.97 8.6 6.7 3.2 6.9 0.2 2.9 2 1 1 3 3 3 0 TMPIT-like protein DASH_Dad2 PF08654.10 gi|88603103|ref|YP_503281.1| - 1.3 9.5 19.3 0.5 10.8 3.5 4.2 2 2 1 3 3 3 0 DASH complex subunit Dad2 Syntaxin-6_N PF09177.11 gi|88603103|ref|YP_503281.1| - 1.8 9.2 18.6 2.6 8.6 2.6 4.0 3 2 1 4 4 3 0 Syntaxin 6, N-terminal DUF1664 PF07889.12 gi|88603103|ref|YP_503281.1| - 2.3 8.3 20.6 13 5.8 3.6 5.4 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) DHR10 PF18595.1 gi|88603103|ref|YP_503281.1| - 4.1 7.5 10.3 2.7 8.1 0.9 3.0 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain MacB_PCD PF12704.7 gi|88603103|ref|YP_503281.1| - 4.8 7.5 13.3 0.16 12.3 1.5 3.5 3 1 1 4 4 4 0 MacB-like periplasmic core domain ATG16 PF08614.11 gi|88603103|ref|YP_503281.1| - 4.9 7.3 12.4 1.7 8.8 2.6 2.7 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF948 PF06103.11 gi|88603103|ref|YP_503281.1| - 5.7 7.3 33.1 1.1 9.5 4.1 5.8 3 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) LOH1CR12 PF10158.9 gi|88603103|ref|YP_503281.1| - 8 6.5 9.5 6.3 6.8 2.6 3.4 2 2 2 4 4 4 0 Tumour suppressor protein PAS_4 PF08448.10 gi|88603104|ref|YP_503282.1| - 1.9e-36 124.6 0.0 5e-15 55.7 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88603104|ref|YP_503282.1| - 4.3e-31 107.3 0.0 1e-11 45.0 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|88603104|ref|YP_503282.1| - 5.6e-26 90.8 0.0 1.3e-09 38.0 0.0 3.9 3 1 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|88603104|ref|YP_503282.1| - 1.6e-24 86.2 0.0 3e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|88603104|ref|YP_503282.1| - 9.3e-14 51.1 0.0 0.0015 18.5 0.0 3.8 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|88603104|ref|YP_503282.1| - 3.8e-09 37.1 0.1 9.2e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|88603104|ref|YP_503282.1| - 2.3e-08 34.2 0.0 0.13 12.6 0.0 4.6 4 0 0 4 4 4 2 PAS fold PAS_10 PF13596.6 gi|88603104|ref|YP_503282.1| - 0.00013 22.5 0.0 0.085 13.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.6 gi|88603104|ref|YP_503282.1| - 0.029 14.2 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88603104|ref|YP_503282.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 gi|88603105|ref|YP_503283.1| - 2.3e-21 76.1 0.0 7.4e-21 74.4 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|88603105|ref|YP_503283.1| - 1e-18 67.4 0.4 5.3e-09 36.2 0.0 5.2 6 0 0 6 6 6 2 PAS fold PAS_4 PF08448.10 gi|88603105|ref|YP_503283.1| - 2.6e-12 47.0 0.0 2.2e-08 34.3 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|88603105|ref|YP_503283.1| - 5.6e-11 42.9 0.1 2.4e-10 40.9 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|88603105|ref|YP_503283.1| - 8.7e-06 25.9 1.4 7.2 6.9 0.0 5.0 4 1 0 4 4 4 2 PAS domain PAS PF00989.25 gi|88603105|ref|YP_503283.1| - 0.00047 20.1 0.0 9.8 6.2 0.0 4.2 4 0 0 4 4 4 1 PAS fold SPOB_a PF14689.6 gi|88603105|ref|YP_503283.1| - 0.0014 18.3 1.6 0.0033 17.1 0.2 2.4 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|88603105|ref|YP_503283.1| - 0.012 15.6 0.0 0.057 13.3 0.0 2.2 2 0 0 2 2 2 0 GHKL domain HATPase_c_2 PF13581.6 gi|88603105|ref|YP_503283.1| - 0.028 14.4 0.0 0.08 12.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_2 PF08446.11 gi|88603105|ref|YP_503283.1| - 0.11 13.2 0.0 0.69 10.6 0.0 2.3 2 0 0 2 2 2 0 PAS fold HisKA_4TM PF16926.5 gi|88603105|ref|YP_503283.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase ATG16 PF08614.11 gi|88603105|ref|YP_503283.1| - 0.27 11.4 4.4 0.34 11.1 1.3 2.4 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF3552 PF12072.8 gi|88603105|ref|YP_503283.1| - 0.48 9.8 10.7 0.037 13.5 4.1 2.5 4 0 0 4 4 4 0 Domain of unknown function (DUF3552) HisKA PF00512.25 gi|88603105|ref|YP_503283.1| - 1.2 9.3 3.8 1.6 8.9 0.1 3.0 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain YgaB PF14182.6 gi|88603105|ref|YP_503283.1| - 6.8 7.2 7.6 2.2 8.7 1.6 3.0 3 0 0 3 3 2 0 YgaB-like protein 4HBT PF03061.22 gi|88603106|ref|YP_503284.1| - 3.6e-11 43.2 0.1 5.1e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|88603106|ref|YP_503284.1| - 2.5e-05 24.4 0.2 3.5e-05 23.9 0.2 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 gi|88603106|ref|YP_503284.1| - 0.00024 20.9 0.0 0.0003 20.6 0.0 1.4 1 1 0 1 1 1 1 Putative thioesterase (yiiD_Cterm) Chlam_PMP PF02415.17 gi|88603106|ref|YP_503284.1| - 0.042 14.4 0.1 0.5 11.0 0.0 2.5 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SKI PF01202.22 gi|88603108|ref|YP_503286.1| - 5.3e-36 124.1 0.0 6.1e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 gi|88603108|ref|YP_503286.1| - 1.4e-09 38.6 0.1 3e-09 37.5 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|88603108|ref|YP_503286.1| - 3.2e-06 27.3 0.0 6e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|88603108|ref|YP_503286.1| - 3.7e-05 24.2 0.2 0.00013 22.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|88603108|ref|YP_503286.1| - 4.6e-05 23.4 0.4 0.15 11.9 0.1 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|88603108|ref|YP_503286.1| - 5.8e-05 22.9 0.0 0.00015 21.6 0.0 1.6 1 1 1 2 2 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|88603108|ref|YP_503286.1| - 0.0011 19.2 0.0 0.0031 17.7 0.0 1.7 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA PF00004.29 gi|88603108|ref|YP_503286.1| - 0.0013 19.2 0.1 0.0021 18.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|88603108|ref|YP_503286.1| - 0.0015 18.3 0.1 0.0022 17.8 0.1 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain ADK PF00406.22 gi|88603108|ref|YP_503286.1| - 0.03 14.4 0.3 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase KTI12 PF08433.10 gi|88603108|ref|YP_503286.1| - 0.076 12.4 0.0 0.13 11.6 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|88603108|ref|YP_503286.1| - 0.09 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 MMR_HSR1 PF01926.23 gi|88603108|ref|YP_503286.1| - 0.093 12.8 0.3 0.2 11.7 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|88603108|ref|YP_503286.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|88603108|ref|YP_503286.1| - 0.24 11.9 0.9 0.5 10.9 0.7 1.5 1 1 0 1 1 1 0 ABC transporter AAA-ATPase_like PF09820.9 gi|88603109|ref|YP_503287.1| - 8.8e-74 248.4 1.3 1e-73 248.2 0.6 1.4 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88603109|ref|YP_503287.1| - 7.9e-23 80.4 0.0 1.7e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF5055 PF16478.5 gi|88603109|ref|YP_503287.1| - 0.14 12.4 0.0 0.62 10.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5055) APP_amyloid PF10515.9 gi|88603111|ref|YP_503289.1| - 0.68 10.5 2.8 22 5.7 0.0 3.0 2 1 1 3 3 3 0 Beta-amyloid precursor protein C-terminus DDE_5 PF13546.6 gi|88603112|ref|YP_503290.1| - 7.9e-14 51.6 0.0 4.8e-13 49.1 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88603112|ref|YP_503290.1| - 9.7e-05 22.1 0.5 0.00014 21.6 0.2 1.4 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88603112|ref|YP_503290.1| - 0.0064 15.8 0.2 0.063 12.5 0.2 2.0 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_2 PF04693.12 gi|88603113|ref|YP_503291.1| - 0.016 14.4 0.0 0.019 14.2 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|88603113|ref|YP_503291.1| - 0.092 12.4 0.3 0.1 12.2 0.3 1.3 1 1 0 1 1 1 0 Transposase DDE domain VanW PF04294.13 gi|88603114|ref|YP_503292.1| - 0.089 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 VanW like protein CRISPR_Cas2 PF09827.9 gi|88603115|ref|YP_503293.1| - 1e-18 67.3 0.6 1.2e-18 67.1 0.6 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Toxin_13 PF07822.11 gi|88603115|ref|YP_503293.1| - 0.11 12.6 0.1 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Neurotoxin B-IV-like protein Cas_Cas1 PF01867.16 gi|88603116|ref|YP_503294.1| - 2.9e-75 253.0 0.0 3.6e-75 252.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.17 gi|88603117|ref|YP_503295.1| - 3.8e-24 85.6 0.0 4.3e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|88603117|ref|YP_503295.1| - 2.4e-07 30.9 1.4 7.1e-06 26.1 0.1 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|88603117|ref|YP_503295.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.4 2 0 0 2 2 2 0 CRISPR-associated exonuclease Csa1 DNA_pol3_theta PF06440.11 gi|88603118|ref|YP_503296.1| - 0.079 12.6 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III, theta subunit DEAD PF00270.29 gi|88603119|ref|YP_503297.1| - 9.9e-10 38.5 0.0 1.7e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|88603119|ref|YP_503297.1| - 0.074 13.4 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain Csc2 PF18320.1 gi|88603121|ref|YP_503299.1| - 4.5e-46 157.2 0.0 7.8e-46 156.4 0.0 1.3 1 1 0 1 1 1 1 Csc2 Crispr CheW PF01584.19 gi|88603122|ref|YP_503300.1| - 0.14 11.8 0.0 0.42 10.2 0.0 1.7 2 0 0 2 2 2 0 CheW-like domain CRISPR_Cas6 PF10040.9 gi|88603123|ref|YP_503301.1| - 7.6e-16 58.5 0.0 1.6e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 MarR PF01047.22 gi|88603124|ref|YP_503302.1| - 7.6e-08 32.2 0.0 1.6e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88603124|ref|YP_503302.1| - 5.9e-07 29.3 0.0 1.6e-06 27.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|88603124|ref|YP_503302.1| - 4.5e-06 26.1 0.9 1.3e-05 24.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|88603124|ref|YP_503302.1| - 5.7e-05 23.0 0.6 0.0001 22.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.6 gi|88603124|ref|YP_503302.1| - 0.00061 19.5 0.9 0.0012 18.6 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88603124|ref|YP_503302.1| - 0.00089 19.1 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|88603124|ref|YP_503302.1| - 0.0023 17.8 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|88603124|ref|YP_503302.1| - 0.0025 17.7 0.0 0.0055 16.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|88603124|ref|YP_503302.1| - 0.0031 17.3 0.0 0.011 15.6 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|88603124|ref|YP_503302.1| - 0.0045 16.9 0.0 0.0089 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|88603124|ref|YP_503302.1| - 0.012 15.2 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|88603124|ref|YP_503302.1| - 0.017 15.6 0.0 0.035 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mga PF05043.13 gi|88603124|ref|YP_503302.1| - 0.018 15.6 0.3 0.09 13.4 0.0 2.1 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|88603124|ref|YP_503302.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_6 PF01418.17 gi|88603124|ref|YP_503302.1| - 0.068 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_IclR PF09339.10 gi|88603124|ref|YP_503302.1| - 0.072 12.9 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|88603124|ref|YP_503302.1| - 0.076 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.6 gi|88603124|ref|YP_503302.1| - 0.087 13.0 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|88603124|ref|YP_503302.1| - 0.097 12.9 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|88603124|ref|YP_503302.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|88603124|ref|YP_503302.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|88603124|ref|YP_503302.1| - 0.17 11.5 0.0 0.41 10.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SNF2_N PF00176.23 gi|88603125|ref|YP_503303.1| - 1.2e-57 195.3 0.0 1.8e-57 194.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.8 gi|88603125|ref|YP_503303.1| - 2.3e-29 102.0 0.0 5.2e-29 100.8 0.0 1.6 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.31 gi|88603125|ref|YP_503303.1| - 1.4e-16 60.8 0.0 2.6e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88603125|ref|YP_503303.1| - 0.00026 21.1 0.0 0.00047 20.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|88603125|ref|YP_503303.1| - 0.014 14.6 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SWIM PF04434.17 gi|88603126|ref|YP_503304.1| - 0.00029 20.4 0.1 0.00062 19.4 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger TrmB PF01978.19 gi|88603127|ref|YP_503305.1| - 0.0032 17.3 0.0 3.2 7.7 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|88603127|ref|YP_503305.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Baculo_p24 PF05073.12 gi|88603127|ref|YP_503305.1| - 0.13 12.1 0.6 1 9.1 0.0 2.2 2 1 0 2 2 2 0 Baculovirus P24 capsid protein AAA_16 PF13191.6 gi|88603128|ref|YP_503306.1| - 0.00038 20.9 0.0 0.0074 16.7 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|88603128|ref|YP_503306.1| - 0.0059 15.9 0.0 0.0082 15.4 0.0 1.3 1 0 0 1 1 1 1 KAP family P-loop domain DUF2791 PF10923.8 gi|88603128|ref|YP_503306.1| - 0.011 14.7 0.0 0.084 11.7 0.0 2.2 3 0 0 3 3 3 0 P-loop Domain of unknown function (DUF2791) AAA_19 PF13245.6 gi|88603128|ref|YP_503306.1| - 0.026 14.9 0.1 0.46 10.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|88603128|ref|YP_503306.1| - 0.027 13.6 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|88603128|ref|YP_503306.1| - 0.062 12.6 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|88603128|ref|YP_503306.1| - 0.093 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88603128|ref|YP_503306.1| - 0.098 12.6 0.0 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain DEAD PF00270.29 gi|88603128|ref|YP_503306.1| - 0.14 11.9 0.0 0.72 9.6 0.0 2.1 2 1 1 3 3 3 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.17 gi|88603128|ref|YP_503306.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.18 gi|88603128|ref|YP_503306.1| - 1.3 8.3 5.4 0.29 10.4 0.7 2.1 2 0 0 2 2 2 0 6-phosphofructo-2-kinase FtsK_SpoIIIE PF01580.18 gi|88603129|ref|YP_503307.1| - 5.9e-30 104.4 0.1 2.1e-20 73.1 0.0 2.2 1 1 1 2 2 2 2 FtsK/SpoIIIE family PDDEXK_1 PF12705.7 gi|88603129|ref|YP_503307.1| - 2e-10 41.0 0.0 3.2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_29 PF13555.6 gi|88603129|ref|YP_503307.1| - 0.039 13.7 0.2 0.089 12.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|88603129|ref|YP_503307.1| - 0.072 13.2 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|88603129|ref|YP_503307.1| - 0.081 13.2 1.0 0.68 10.2 0.4 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|88603129|ref|YP_503307.1| - 0.12 12.8 0.0 0.33 11.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.15 gi|88603129|ref|YP_503307.1| - 0.12 11.1 0.2 0.21 10.4 0.2 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_10 PF12846.7 gi|88603129|ref|YP_503307.1| - 0.24 10.3 0.0 0.51 9.2 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ParE_toxin PF05016.15 gi|88603131|ref|YP_503309.1| - 1.4e-07 32.0 0.0 1.6e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VAPB_antitox PF02697.14 gi|88603132|ref|YP_503310.1| - 0.043 14.6 1.1 0.23 12.2 1.1 2.0 1 1 0 1 1 1 0 Putative antitoxin KxDL PF10241.9 gi|88603132|ref|YP_503310.1| - 0.096 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein TraY PF05509.11 gi|88603132|ref|YP_503310.1| - 0.13 12.3 0.0 18 5.4 0.0 2.6 3 0 0 3 3 3 0 TraY domain DUF3821 PF12863.7 gi|88603134|ref|YP_503312.1| - 8e-70 235.0 0.0 1e-69 234.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) VAPB_antitox PF02697.14 gi|88603135|ref|YP_503313.1| - 0.047 14.5 1.1 0.25 12.1 1.1 2.0 1 1 0 1 1 1 0 Putative antitoxin KxDL PF10241.9 gi|88603135|ref|YP_503313.1| - 0.13 12.6 0.0 0.18 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein ParE_toxin PF05016.15 gi|88603138|ref|YP_503316.1| - 3.5e-06 27.5 0.2 4e-06 27.4 0.2 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE AAA_16 PF13191.6 gi|88603140|ref|YP_503318.1| - 0.031 14.6 0.0 0.1 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain DUF3987 PF13148.6 gi|88603140|ref|YP_503318.1| - 0.86 8.5 0.0 0.86 8.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) Rbsn PF11464.8 gi|88603143|ref|YP_503321.1| - 0.045 13.5 0.1 0.069 12.9 0.1 1.2 1 0 0 1 1 1 0 Rabenosyn Rab binding domain AAA-ATPase_like PF09820.9 gi|88603144|ref|YP_503322.1| - 5e-77 259.1 0.3 7.2e-77 258.5 0.3 1.2 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88603144|ref|YP_503322.1| - 4.1e-24 84.5 0.0 7.5e-24 83.7 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily TPR_16 PF13432.6 gi|88603145|ref|YP_503323.1| - 1.9e-17 63.6 0.0 1.2e-07 32.3 0.0 2.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603145|ref|YP_503323.1| - 1.3e-15 56.5 0.1 0.00011 21.9 0.0 3.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603145|ref|YP_503323.1| - 2.1e-15 55.5 0.0 0.00011 22.0 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603145|ref|YP_503323.1| - 1.4e-11 43.9 0.0 0.002 18.4 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603145|ref|YP_503323.1| - 1.5e-11 44.7 0.0 9.5e-08 32.4 0.0 2.9 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603145|ref|YP_503323.1| - 2.5e-11 42.9 0.0 0.00012 22.0 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603145|ref|YP_503323.1| - 7e-11 41.6 0.2 0.11 12.2 0.0 4.1 2 1 2 4 4 4 4 TPR repeat TPR_12 PF13424.6 gi|88603145|ref|YP_503323.1| - 2e-10 40.8 0.1 0.00014 22.1 0.1 2.6 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603145|ref|YP_503323.1| - 3.7e-10 39.1 0.4 0.0037 17.2 0.0 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603145|ref|YP_503323.1| - 4.2e-10 39.6 0.1 5.1e-06 26.9 0.0 3.2 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603145|ref|YP_503323.1| - 4.1e-08 33.3 0.0 9.1e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603145|ref|YP_503323.1| - 1.4e-06 28.5 0.0 0.14 12.8 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603145|ref|YP_503323.1| - 1.9e-05 24.8 0.0 0.0015 18.7 0.0 1.7 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|88603145|ref|YP_503323.1| - 0.00031 20.1 0.0 0.0043 16.3 0.0 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88603145|ref|YP_503323.1| - 0.0005 20.5 0.0 0.00066 20.1 0.0 1.3 1 1 0 1 1 1 1 Alkyl sulfatase dimerisation TPR_5 PF12688.7 gi|88603145|ref|YP_503323.1| - 0.00084 19.6 0.0 0.0011 19.2 0.0 1.1 1 0 0 1 1 1 1 Tetratrico peptide repeat TPR_20 PF14561.6 gi|88603145|ref|YP_503323.1| - 0.0011 19.2 0.0 0.4 11.0 0.0 2.8 1 1 2 3 3 3 1 Tetratricopeptide repeat PPR PF01535.20 gi|88603145|ref|YP_503323.1| - 0.0077 16.4 1.0 0.89 9.9 0.0 2.5 3 0 0 3 3 2 1 PPR repeat TPR_21 PF09976.9 gi|88603145|ref|YP_503323.1| - 0.0091 15.7 0.0 0.35 10.5 0.0 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|88603145|ref|YP_503323.1| - 0.061 12.2 0.0 0.13 11.2 0.0 1.5 1 1 0 1 1 1 0 NMDA receptor-regulated protein 1 RPN7 PF10602.9 gi|88603145|ref|YP_503323.1| - 0.068 12.9 0.0 0.53 10.0 0.0 2.0 1 1 1 2 2 2 0 26S proteasome subunit RPN7 SNAP PF14938.6 gi|88603145|ref|YP_503323.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 Soluble NSF attachment protein, SNAP TPR_10 PF13374.6 gi|88603145|ref|YP_503323.1| - 0.11 12.3 0.2 1.5 8.8 0.0 2.5 3 0 0 3 3 2 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|88603145|ref|YP_503323.1| - 0.14 11.2 0.0 0.28 10.1 0.0 1.5 1 1 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_19 PF14559.6 gi|88603146|ref|YP_503324.1| - 0.0061 17.1 0.0 0.27 11.8 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603146|ref|YP_503324.1| - 0.028 14.5 0.1 5.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat DUF4276 PF14103.6 gi|88603147|ref|YP_503325.1| - 0.093 12.9 0.0 0.093 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) AAA_21 PF13304.6 gi|88603148|ref|YP_503326.1| - 1.3e-34 120.5 1.7 2.2e-34 119.7 1.7 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88603148|ref|YP_503326.1| - 8.5e-19 68.5 0.1 2.4e-10 40.7 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|88603148|ref|YP_503326.1| - 2.8e-09 36.7 0.0 5.5e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88603148|ref|YP_503326.1| - 1.7e-06 27.6 0.0 3.3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|88603148|ref|YP_503326.1| - 5.8e-05 23.7 0.1 0.00011 22.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|88603148|ref|YP_503326.1| - 0.017 15.7 0.0 0.078 13.5 0.0 2.1 1 1 0 1 1 1 0 ABC transporter AAA_27 PF13514.6 gi|88603148|ref|YP_503326.1| - 0.034 13.7 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF1788 PF08747.11 gi|88603149|ref|YP_503327.1| - 8.2e-41 138.9 0.2 1.1e-40 138.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) KAP_NTPase PF07693.14 gi|88603150|ref|YP_503328.1| - 0.002 17.4 0.0 0.013 14.7 0.0 2.4 2 1 0 2 2 2 1 KAP family P-loop domain NACHT PF05729.12 gi|88603150|ref|YP_503328.1| - 0.0022 17.9 0.0 0.019 14.9 0.0 2.6 3 0 0 3 3 3 1 NACHT domain RGS PF00615.19 gi|88603150|ref|YP_503328.1| - 0.012 15.9 2.8 5.6 7.3 0.9 3.3 2 0 0 2 2 2 0 Regulator of G protein signaling domain Csm1_B PF18211.1 gi|88603150|ref|YP_503328.1| - 0.02 14.7 0.1 0.27 11.1 0.0 3.0 2 1 1 3 3 3 0 Csm1 subunit domain B DUF1845 PF08900.11 gi|88603150|ref|YP_503328.1| - 0.022 14.5 0.2 0.06 13.1 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) AAA_22 PF13401.6 gi|88603150|ref|YP_503328.1| - 0.13 12.5 0.4 4.4 7.6 0.0 3.5 3 1 0 3 3 3 0 AAA domain GnsAB_toxin PF08178.11 gi|88603150|ref|YP_503328.1| - 0.16 11.9 1.5 0.55 10.2 0.3 2.6 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system Plant_all_beta PF10532.9 gi|88603150|ref|YP_503328.1| - 0.31 11.3 4.1 0.65 10.3 1.6 2.7 2 0 0 2 2 2 0 Plant specific N-all beta domain DUF4423 PF14394.6 gi|88603150|ref|YP_503328.1| - 0.49 10.1 4.6 17 5.1 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4423) SMC_N PF02463.19 gi|88603150|ref|YP_503328.1| - 6.8 6.1 8.5 0.72 9.3 1.9 2.7 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain N6_Mtase PF02384.16 gi|88603151|ref|YP_503329.1| - 9.9e-13 48.0 0.2 1.2e-06 28.0 0.1 2.6 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.11 gi|88603151|ref|YP_503329.1| - 9.4e-08 32.5 0.1 4.1e-07 30.5 0.1 2.1 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|88603151|ref|YP_503329.1| - 0.035 13.8 0.2 3.6 7.2 0.2 2.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|88603151|ref|YP_503329.1| - 0.083 12.7 0.1 0.24 11.2 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain RE_SinI PF09570.10 gi|88603152|ref|YP_503330.1| - 0.046 13.0 0.0 0.075 12.3 0.0 1.3 1 0 0 1 1 1 0 SinI restriction endonuclease DUF3696 PF12476.8 gi|88603153|ref|YP_503331.1| - 0.0012 19.3 0.7 0.48 10.9 0.2 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF3696) HEPN PF05168.14 gi|88603154|ref|YP_503332.1| - 0.14 12.3 0.9 0.87 9.7 0.8 2.0 1 1 0 1 1 1 0 HEPN domain HATPase_c_4 PF13749.6 gi|88603155|ref|YP_503333.1| - 6.1e-25 87.2 0.2 1.4e-24 86.0 0.1 1.7 2 0 0 2 2 2 1 Putative ATP-dependent DNA helicase recG C-terminal HTH_45 PF14947.6 gi|88603155|ref|YP_503333.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DDE_Tnp_IS1 PF03400.13 gi|88603157|ref|YP_503335.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88603157|ref|YP_503335.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88603157|ref|YP_503335.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88603158|ref|YP_503336.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88603158|ref|YP_503336.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88603158|ref|YP_503336.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88603158|ref|YP_503336.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain PglZ PF08665.12 gi|88603159|ref|YP_503337.1| - 7e-57 192.3 0.8 1.4e-56 191.4 0.8 1.5 1 0 0 1 1 1 1 PglZ domain Phosphodiest PF01663.22 gi|88603159|ref|YP_503337.1| - 0.00086 19.0 0.1 0.0016 18.1 0.1 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|88603159|ref|YP_503337.1| - 0.058 12.7 0.3 0.12 11.7 0.3 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily Lon_2 PF13337.6 gi|88603160|ref|YP_503338.1| - 7.6e-205 680.7 0.0 9.1e-205 680.5 0.0 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 gi|88603160|ref|YP_503338.1| - 1.3e-09 37.9 0.0 3.8e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DDE_Tnp_1 PF01609.21 gi|88603161|ref|YP_503339.1| - 3.7e-24 85.6 0.0 7.9e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain CorA PF01544.18 gi|88603161|ref|YP_503339.1| - 0.033 13.5 0.1 0.052 12.9 0.1 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DDE_Tnp_1_3 PF13612.6 gi|88603161|ref|YP_503339.1| - 0.04 13.9 0.3 0.31 11.0 0.1 2.4 3 0 0 3 3 3 0 Transposase DDE domain HsdM_N PF12161.8 gi|88603162|ref|YP_503340.1| - 9.6e-10 39.2 0.0 2.4e-09 37.9 0.0 1.6 1 1 0 1 1 1 1 HsdM N-terminal domain SBP_bac_3 PF00497.20 gi|88603162|ref|YP_503340.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 MazE_antitoxin PF04014.18 gi|88603163|ref|YP_503341.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|88603164|ref|YP_503342.1| - 4.4e-18 66.0 0.1 4.8e-18 65.8 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|88603164|ref|YP_503342.1| - 0.0015 18.2 0.0 0.0048 16.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) PIN_3 PF13470.6 gi|88603164|ref|YP_503342.1| - 0.0035 18.1 0.0 0.0042 17.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 gi|88603164|ref|YP_503342.1| - 0.063 13.2 0.1 1.1 9.1 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) RPT PF13446.6 gi|88603165|ref|YP_503343.1| - 0.06 13.3 0.1 0.072 13.0 0.1 1.1 1 0 0 1 1 1 0 A repeated domain in UCH-protein IlvC PF01450.19 gi|88603165|ref|YP_503343.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.0 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF3509 PF12021.8 gi|88603167|ref|YP_503345.1| - 0.039 13.7 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) PIN PF01850.21 gi|88603168|ref|YP_503346.1| - 1.1e-16 61.4 0.0 1.7e-16 60.8 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|88603168|ref|YP_503346.1| - 0.048 14.2 0.1 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 PIN domain DUF104 PF01954.16 gi|88603169|ref|YP_503347.1| - 2.8e-18 66.1 1.1 3.2e-18 65.9 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Ig_2 PF13895.6 gi|88603170|ref|YP_503348.1| - 0.086 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Immunoglobulin domain DUF3509 PF12021.8 gi|88603171|ref|YP_503349.1| - 0.035 13.9 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) DUF3482 PF11981.8 gi|88603172|ref|YP_503350.1| - 0.27 10.6 1.2 0.32 10.3 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) TPR_1 PF00515.28 gi|88603174|ref|YP_503352.1| - 1.2e-21 75.5 1.7 1.2e-08 34.4 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603174|ref|YP_503352.1| - 3.1e-20 70.6 0.7 1e-06 28.4 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603174|ref|YP_503352.1| - 2.7e-15 55.2 0.5 5.1e-05 23.2 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603174|ref|YP_503352.1| - 5.9e-15 54.5 0.8 1.7e-07 31.2 0.0 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603174|ref|YP_503352.1| - 5.5e-14 51.6 1.4 1.2e-08 34.5 0.1 2.4 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.6 gi|88603174|ref|YP_503352.1| - 4.6e-12 46.4 0.0 3.6e-07 30.7 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603174|ref|YP_503352.1| - 7.4e-12 45.4 0.8 3.3e-06 27.3 0.3 2.9 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603174|ref|YP_503352.1| - 1.7e-11 44.4 0.2 1.3e-05 25.6 0.2 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603174|ref|YP_503352.1| - 2.9e-10 40.1 0.0 0.00014 22.4 0.0 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603174|ref|YP_503352.1| - 4.9e-08 32.5 0.3 0.0013 18.6 0.1 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603174|ref|YP_503352.1| - 5.1e-08 33.0 0.1 6.7e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88603174|ref|YP_503352.1| - 1.1e-06 28.7 0.1 0.0031 17.6 0.0 1.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603174|ref|YP_503352.1| - 2.9e-06 27.5 0.1 0.4 11.4 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88603174|ref|YP_503352.1| - 4.4e-06 27.2 0.1 0.00015 22.2 0.1 2.0 1 1 1 2 2 2 1 Alkyl sulfatase dimerisation TPR_10 PF13374.6 gi|88603174|ref|YP_503352.1| - 5.4e-06 26.1 1.2 0.087 12.7 0.1 3.5 4 0 0 4 4 3 1 Tetratricopeptide repeat MIT PF04212.18 gi|88603174|ref|YP_503352.1| - 8.3e-06 25.8 0.7 0.0023 17.9 0.0 2.6 3 0 0 3 3 2 1 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.6 gi|88603174|ref|YP_503352.1| - 1.1e-05 25.4 0.3 0.0082 16.2 0.0 2.4 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88603174|ref|YP_503352.1| - 0.00017 20.7 0.1 0.00067 18.7 0.0 1.7 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|88603174|ref|YP_503352.1| - 0.023 14.8 0.0 4.3 7.4 0.0 2.4 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.14 gi|88603174|ref|YP_503352.1| - 0.024 14.1 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 Coatomer epsilon subunit TPR_4 PF07721.14 gi|88603174|ref|YP_503352.1| - 0.025 15.2 0.0 2.3 9.1 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPPII_N PF12583.8 gi|88603174|ref|YP_503352.1| - 0.026 15.1 0.8 0.99 10.0 0.1 2.1 1 1 1 2 2 2 0 Tripeptidyl peptidase II N terminal DUF5113 PF17140.4 gi|88603174|ref|YP_503352.1| - 0.028 14.2 0.4 0.95 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) TPR_20 PF14561.6 gi|88603174|ref|YP_503352.1| - 0.031 14.6 0.0 3.1 8.2 0.0 2.5 1 1 2 3 3 3 0 Tetratricopeptide repeat Fe-S_assembly PF04384.13 gi|88603174|ref|YP_503352.1| - 0.04 14.5 0.0 0.079 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron-sulphur cluster assembly Mce4_CUP1 PF11887.8 gi|88603174|ref|YP_503352.1| - 0.044 13.2 0.1 2.6 7.4 0.0 2.0 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative TPR_5 PF12688.7 gi|88603174|ref|YP_503352.1| - 0.06 13.6 0.0 0.2 11.9 0.0 1.8 2 1 1 3 3 2 0 Tetratrico peptide repeat PPR_long PF17177.4 gi|88603174|ref|YP_503352.1| - 0.12 11.8 0.2 0.19 11.1 0.2 1.4 1 1 0 1 1 1 0 Pentacotripeptide-repeat region of PRORP Response_reg PF00072.24 gi|88603175|ref|YP_503353.1| - 1.8e-21 76.4 0.0 2.7e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Vhr1 PF04001.13 gi|88603175|ref|YP_503353.1| - 0.16 12.3 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Vhr1 Aldo_ket_red PF00248.21 gi|88603176|ref|YP_503354.1| - 5.9e-40 137.3 0.0 5e-38 131.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_9 PF13187.6 gi|88603176|ref|YP_503354.1| - 4.8e-11 42.7 6.4 9.9e-11 41.6 6.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603176|ref|YP_503354.1| - 2e-10 41.0 5.5 5e-10 39.8 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603176|ref|YP_503354.1| - 4.4e-05 23.5 7.0 0.016 15.3 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603176|ref|YP_503354.1| - 5.2e-05 23.6 6.4 0.00019 21.8 6.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603176|ref|YP_503354.1| - 0.00017 21.6 9.4 0.00068 19.7 9.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603176|ref|YP_503354.1| - 0.00023 20.8 4.0 0.00023 20.8 4.0 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88603176|ref|YP_503354.1| - 0.0012 18.8 3.8 0.0012 18.8 3.8 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603176|ref|YP_503354.1| - 0.0012 19.0 2.9 0.23 11.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88603176|ref|YP_503354.1| - 0.0021 18.9 4.5 0.035 14.9 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603176|ref|YP_503354.1| - 0.0021 18.0 3.1 0.0021 18.0 3.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603176|ref|YP_503354.1| - 0.0027 18.3 11.1 0.021 15.4 2.8 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603176|ref|YP_503354.1| - 0.0045 17.4 3.5 0.0045 17.4 3.5 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603176|ref|YP_503354.1| - 0.016 16.1 7.2 0.037 15.0 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|88603176|ref|YP_503354.1| - 0.052 14.5 5.8 0.052 14.5 5.8 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|88603176|ref|YP_503354.1| - 0.17 11.7 0.1 0.17 11.7 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CheW PF01584.19 gi|88603177|ref|YP_503355.1| - 6.6e-30 103.5 0.5 7.6e-30 103.3 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain HI0933_like PF03486.14 gi|88603178|ref|YP_503356.1| - 1.2e-109 366.7 0.0 1.4e-109 366.5 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|88603178|ref|YP_503356.1| - 1.2e-14 54.2 0.1 0.00016 20.9 0.1 3.2 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_3 PF13738.6 gi|88603178|ref|YP_503356.1| - 3.5e-13 49.5 0.3 7.2e-10 38.6 0.4 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|88603178|ref|YP_503356.1| - 7.9e-08 32.3 2.0 0.00038 20.2 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|88603178|ref|YP_503356.1| - 6.1e-07 29.0 0.0 4e-06 26.3 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|88603178|ref|YP_503356.1| - 1.8e-06 27.5 0.2 3.9e-05 23.1 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|88603178|ref|YP_503356.1| - 5.4e-05 22.4 2.8 0.0047 16.1 0.1 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|88603178|ref|YP_503356.1| - 0.00053 20.2 0.1 0.0014 18.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|88603178|ref|YP_503356.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.7 gi|88603178|ref|YP_503356.1| - 0.017 14.5 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|88603178|ref|YP_503356.1| - 0.084 13.4 0.1 16 6.2 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase zf-ribbon_3 PF13248.6 gi|88603179|ref|YP_503357.1| - 3.6e-06 26.2 3.3 6e-06 25.5 3.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|88603179|ref|YP_503357.1| - 5.2e-06 26.0 2.1 9.1e-06 25.2 2.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DUF1080 PF06439.11 gi|88603179|ref|YP_503357.1| - 2.9e-05 24.2 0.1 4.2e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1080) DZR PF12773.7 gi|88603179|ref|YP_503357.1| - 9.9e-05 22.3 0.3 0.00016 21.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Laminin_G_3 PF13385.6 gi|88603179|ref|YP_503357.1| - 0.0087 16.2 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily zf-RanBP PF00641.18 gi|88603179|ref|YP_503357.1| - 0.1 11.9 2.5 0.17 11.2 2.5 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others OCD_Mu_crystall PF02423.15 gi|88603180|ref|YP_503358.1| - 1.1e-89 300.5 0.0 1.5e-89 300.1 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|88603180|ref|YP_503358.1| - 1.2e-06 29.0 0.0 2.4e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|88603180|ref|YP_503358.1| - 2.4e-05 24.4 0.0 4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|88603180|ref|YP_503358.1| - 0.11 13.0 0.0 0.38 11.2 0.0 2.0 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Beta-lactamase PF00144.24 gi|88603181|ref|YP_503359.1| - 3.1e-48 164.7 0.1 3.7e-48 164.5 0.1 1.0 1 0 0 1 1 1 1 Beta-lactamase SdpI PF13630.6 gi|88603182|ref|YP_503360.1| - 1.5e-16 60.2 1.3 1.5e-16 60.2 1.3 3.5 2 1 0 2 2 2 1 SdpI/YhfL protein family DUF1648 PF07853.11 gi|88603182|ref|YP_503360.1| - 1e-14 53.9 3.0 1e-14 53.9 3.0 3.7 4 1 0 4 4 4 1 Protein of unknown function (DUF1648) DUF4448 PF14610.6 gi|88603182|ref|YP_503360.1| - 0.043 13.6 0.8 0.043 13.6 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) DUF1772 PF08592.11 gi|88603182|ref|YP_503360.1| - 1.1 9.6 6.2 13 6.1 0.2 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF1772) DUF4131 PF13567.6 gi|88603182|ref|YP_503360.1| - 1.1 8.9 15.9 0.91 9.2 1.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF1129 PF06570.11 gi|88603182|ref|YP_503360.1| - 2.8 7.4 15.3 0.053 13.0 2.8 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) S_4TM PF18159.1 gi|88603182|ref|YP_503360.1| - 9.8 5.4 7.0 9.3 5.5 0.7 2.3 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain Acetyltransf_3 PF13302.7 gi|88603183|ref|YP_503361.1| - 1.2e-24 87.6 0.0 1.5e-24 87.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88603183|ref|YP_503361.1| - 1.2e-11 44.9 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|88603183|ref|YP_503361.1| - 1.7e-10 41.3 0.0 1.9e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|88603183|ref|YP_503361.1| - 3.8e-06 26.6 0.1 9.7e-06 25.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain TIG PF01833.24 gi|88603184|ref|YP_503362.1| - 2.8e-24 85.0 13.5 0.00012 22.1 0.0 6.3 6 0 0 6 6 6 6 IPT/TIG domain MG2 PF01835.19 gi|88603184|ref|YP_503362.1| - 1e-09 38.7 0.1 0.52 10.8 0.0 5.7 6 0 0 6 6 6 3 MG2 domain Qn_am_d_aIII PF09099.10 gi|88603184|ref|YP_503362.1| - 7.3e-09 35.9 0.2 0.055 13.8 0.0 4.8 5 0 0 5 5 5 3 Quinohemoprotein amine dehydrogenase, alpha subunit domain III DUF4625 PF15418.6 gi|88603184|ref|YP_503362.1| - 0.0012 19.1 0.0 34 4.7 0.0 5.1 5 0 0 5 5 5 0 Domain of unknown function (DUF4625) NPCBM_assoc PF10633.9 gi|88603184|ref|YP_503362.1| - 0.014 15.6 0.4 2.1 8.7 0.0 3.9 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF756 PF05506.12 gi|88603184|ref|YP_503362.1| - 0.028 15.3 0.1 4.4 8.3 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF756) Anth_Ig PF05587.13 gi|88603184|ref|YP_503362.1| - 0.089 13.1 0.0 58 4.1 0.0 3.4 3 0 0 3 3 3 0 Anthrax receptor extracellular domain PAS_4 PF08448.10 gi|88603185|ref|YP_503363.1| - 2.6e-10 40.5 0.0 7.5e-07 29.4 0.0 3.2 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 gi|88603185|ref|YP_503363.1| - 8.9e-09 35.3 0.0 4.1e-07 30.0 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|88603185|ref|YP_503363.1| - 1.4e-08 35.2 0.0 4e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|88603185|ref|YP_503363.1| - 5.5e-08 33.0 0.0 2.2e-07 31.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain dCache_1 PF02743.18 gi|88603185|ref|YP_503363.1| - 0.0019 18.1 0.6 1.4 8.6 0.0 2.8 3 0 0 3 3 3 2 Cache domain PAS_8 PF13188.7 gi|88603185|ref|YP_503363.1| - 0.0035 17.3 0.0 0.013 15.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|88603185|ref|YP_503363.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|88603185|ref|YP_503363.1| - 0.081 13.5 0.0 0.25 12.0 0.0 1.8 2 0 0 2 2 2 0 PAS domain SPOB_a PF14689.6 gi|88603185|ref|YP_503363.1| - 0.098 12.4 0.5 0.37 10.5 0.4 2.0 1 1 1 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain TMP-TENI PF02581.17 gi|88603186|ref|YP_503364.1| - 1.7e-62 210.0 0.6 2e-62 209.8 0.6 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|88603186|ref|YP_503364.1| - 4.3e-07 29.6 1.9 5.6e-07 29.3 1.9 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|88603186|ref|YP_503364.1| - 0.011 15.0 1.3 0.014 14.7 1.3 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|88603186|ref|YP_503364.1| - 0.012 15.0 0.4 0.023 14.2 0.1 1.5 2 0 0 2 2 2 0 Histidine biosynthesis protein DHO_dh PF01180.21 gi|88603186|ref|YP_503364.1| - 0.019 14.2 1.0 0.031 13.5 1.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|88603186|ref|YP_503364.1| - 0.055 12.6 1.2 0.18 11.0 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Thi4 PF01946.17 gi|88603187|ref|YP_503365.1| - 2.3e-74 249.6 1.5 2.7e-74 249.4 1.5 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|88603187|ref|YP_503365.1| - 9.4e-09 35.1 2.0 1.1e-08 34.9 2.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|88603187|ref|YP_503365.1| - 4.1e-08 33.3 0.4 1.2e-07 31.8 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|88603187|ref|YP_503365.1| - 4.5e-07 29.8 6.3 0.0035 17.0 3.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|88603187|ref|YP_503365.1| - 5.2e-07 28.7 2.8 2e-06 26.8 2.6 1.9 1 1 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|88603187|ref|YP_503365.1| - 1.3e-06 27.8 8.7 1.5e-05 24.3 3.3 2.9 2 1 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|88603187|ref|YP_503365.1| - 1.3e-05 24.7 0.5 5e-05 22.7 0.2 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|88603187|ref|YP_503365.1| - 1.7e-05 24.2 1.1 2.6e-05 23.6 0.5 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|88603187|ref|YP_503365.1| - 0.00045 20.7 0.7 0.018 15.6 0.7 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|88603187|ref|YP_503365.1| - 0.00085 18.5 1.1 0.0012 18.0 1.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|88603187|ref|YP_503365.1| - 0.0011 18.1 2.1 0.0021 17.2 0.9 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|88603187|ref|YP_503365.1| - 0.019 14.2 3.9 0.039 13.2 3.7 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|88603187|ref|YP_503365.1| - 0.035 13.2 0.1 0.051 12.7 0.1 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|88603187|ref|YP_503365.1| - 0.036 14.0 1.0 0.082 12.9 1.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|88603187|ref|YP_503365.1| - 0.042 13.7 0.4 0.083 12.8 0.4 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|88603187|ref|YP_503365.1| - 0.055 13.0 0.1 0.082 12.5 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|88603187|ref|YP_503365.1| - 0.25 10.2 1.9 1.6 7.5 1.0 2.0 1 1 1 2 2 2 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.23 gi|88603187|ref|YP_503365.1| - 1.3 8.9 3.6 6.7 6.7 3.6 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrmO PF01980.16 gi|88603188|ref|YP_503366.1| - 1.3e-28 99.6 0.0 1.6e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O TspO_MBR PF03073.15 gi|88603189|ref|YP_503367.1| - 1e-42 145.4 24.8 1.2e-42 145.1 24.8 1.1 1 0 0 1 1 1 1 TspO/MBR family eIF-1a PF01176.19 gi|88603190|ref|YP_503368.1| - 6.4e-18 64.3 0.3 8.1e-18 64.0 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 PALP PF00291.25 gi|88603191|ref|YP_503369.1| - 8.2e-79 265.1 0.3 1e-78 264.7 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|88603191|ref|YP_503369.1| - 5.4e-06 26.1 0.0 1.4e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|88603191|ref|YP_503369.1| - 0.0057 17.2 0.0 0.015 15.9 0.0 1.8 1 0 0 1 1 1 1 ACT domain TauE PF01925.19 gi|88603192|ref|YP_503370.1| - 3.1e-45 154.7 48.2 3.9e-45 154.3 48.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Response_reg PF00072.24 gi|88603193|ref|YP_503371.1| - 3.3e-29 101.3 0.1 4.3e-29 101.0 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Lactamase_B PF00753.27 gi|88603194|ref|YP_503372.1| - 3e-10 40.5 2.9 3.7e-10 40.1 0.3 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily TPR_2 PF07719.17 gi|88603194|ref|YP_503372.1| - 3e-08 33.2 0.0 0.00068 19.6 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat Lactamase_B_2 PF12706.7 gi|88603194|ref|YP_503372.1| - 2.4e-05 23.9 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TPR_1 PF00515.28 gi|88603194|ref|YP_503372.1| - 4.2e-05 23.2 0.0 0.0088 15.8 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603194|ref|YP_503372.1| - 8.1e-05 22.5 0.0 0.0051 16.9 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603194|ref|YP_503372.1| - 0.00013 21.6 0.2 0.15 11.7 0.1 2.3 2 0 0 2 2 2 2 TPR repeat TPR_16 PF13432.6 gi|88603194|ref|YP_503372.1| - 0.00034 21.2 0.0 0.0053 17.4 0.0 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603194|ref|YP_503372.1| - 0.0017 18.8 0.0 0.0033 17.9 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603194|ref|YP_503372.1| - 0.0054 17.4 0.0 0.73 10.8 0.0 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|88603194|ref|YP_503372.1| - 0.015 15.0 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 Lactamase_B_6 PF16661.5 gi|88603194|ref|YP_503372.1| - 0.043 13.3 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PPR PF01535.20 gi|88603194|ref|YP_503372.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 PPR repeat Trypan_PARP PF05887.11 gi|88603194|ref|YP_503372.1| - 0.083 12.9 8.8 0.18 11.8 8.8 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PLRV_ORF5 PF01690.17 gi|88603194|ref|YP_503372.1| - 0.11 11.2 0.7 0.16 10.6 0.7 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein TPR_15 PF13429.6 gi|88603194|ref|YP_503372.1| - 0.22 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TonB_N PF16031.5 gi|88603194|ref|YP_503372.1| - 2.6 8.5 17.2 6.1 7.4 17.2 1.5 1 0 0 1 1 1 0 TonB polyproline region Response_reg PF00072.24 gi|88603195|ref|YP_503373.1| - 3e-20 72.5 0.0 7.8e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|88603195|ref|YP_503373.1| - 5.9e-15 55.4 0.0 6.3e-07 29.6 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|88603195|ref|YP_503373.1| - 4.5e-12 45.7 0.0 5.1e-06 26.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|88603195|ref|YP_503373.1| - 7.1e-12 45.8 0.0 1.9e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88603195|ref|YP_503373.1| - 8e-08 32.3 0.1 3.4e-06 27.0 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|88603195|ref|YP_503373.1| - 1.3e-06 28.7 0.1 0.0016 18.7 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|88603195|ref|YP_503373.1| - 0.00062 20.0 0.0 0.0019 18.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|88603195|ref|YP_503373.1| - 0.0016 18.5 0.3 0.48 10.6 0.0 3.5 3 1 0 3 3 3 1 PAS fold SPOB_a PF14689.6 gi|88603195|ref|YP_503373.1| - 0.022 14.4 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Peptidase_S8 PF00082.22 gi|88603196|ref|YP_503374.1| - 4.4e-45 154.2 10.7 4.4e-45 154.2 10.7 1.6 2 0 0 2 2 2 1 Subtilase family DUF3277 PF11681.8 gi|88603196|ref|YP_503374.1| - 0.0036 17.2 0.7 0.0036 17.2 0.7 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF3277) MethyltransfD12 PF02086.15 gi|88603197|ref|YP_503375.1| - 9.3e-58 195.9 0.4 1.1e-57 195.7 0.4 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Na_sulph_symp PF00939.19 gi|88603198|ref|YP_503376.1| - 8.9e-85 285.5 45.0 1.1e-84 285.2 45.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|88603198|ref|YP_503376.1| - 6.5e-47 160.2 39.4 6.5e-47 160.2 39.4 2.1 1 1 1 2 2 2 1 Citrate transporter S_4TM PF18159.1 gi|88603198|ref|YP_503376.1| - 3.3 6.9 12.5 8.5 5.6 0.6 3.0 2 1 0 2 2 2 0 SMODS-associating 4TM effector domain Imm10 PF15588.6 gi|88603199|ref|YP_503377.1| - 0.049 13.8 0.0 0.15 12.1 0.0 1.7 1 1 1 2 2 2 0 Immunity protein 10 DUF3821 PF12863.7 gi|88603200|ref|YP_503378.1| - 1.7e-73 247.0 0.3 3.6e-73 245.9 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) DUF3819 PF12842.7 gi|88603201|ref|YP_503379.1| - 0.17 11.8 3.7 0.2 11.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3819) Cob_adeno_trans PF01923.18 gi|88603201|ref|YP_503379.1| - 0.19 11.8 1.7 0.3 11.2 0.2 2.0 2 0 0 2 2 2 0 Cobalamin adenosyltransferase Dzip-like_N PF13815.6 gi|88603201|ref|YP_503379.1| - 0.35 10.8 6.2 0.37 10.8 1.1 2.5 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal MFS_1 PF07690.16 gi|88603202|ref|YP_503380.1| - 2.6e-58 197.6 50.8 2.6e-58 197.6 50.8 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88603202|ref|YP_503380.1| - 3.7e-08 32.7 19.4 3.7e-08 32.7 19.4 3.7 2 2 2 4 4 4 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|88603202|ref|YP_503380.1| - 2.3e-05 23.0 10.1 2.3e-05 23.0 10.1 2.4 3 1 0 3 3 3 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|88603202|ref|YP_503380.1| - 0.00024 20.1 13.0 0.00024 20.1 13.0 2.6 2 1 0 2 2 2 2 MFS_1 like family PUCC PF03209.15 gi|88603202|ref|YP_503380.1| - 0.68 8.9 31.8 0.28 10.1 12.7 2.9 2 2 0 2 2 2 0 PUCC protein DUF45 PF01863.17 gi|88603203|ref|YP_503381.1| - 8.2e-63 212.2 0.0 1.8e-45 155.5 0.0 4.1 4 0 0 4 4 4 4 Protein of unknown function DUF45 WLM PF08325.10 gi|88603203|ref|YP_503381.1| - 0.00025 21.2 0.2 0.00046 20.3 0.2 1.4 1 0 0 1 1 1 1 WLM domain Nitroreductase PF00881.24 gi|88603204|ref|YP_503382.1| - 3e-06 27.4 0.0 4.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family MatE PF01554.18 gi|88603205|ref|YP_503383.1| - 7.4e-56 188.2 45.1 1.5e-29 102.7 13.8 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|88603205|ref|YP_503383.1| - 3.2e-10 40.3 15.4 3.2e-10 40.3 15.4 5.0 2 2 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MarR PF01047.22 gi|88603206|ref|YP_503384.1| - 1.4e-13 50.5 0.0 2.4e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|88603206|ref|YP_503384.1| - 5.2e-09 35.9 0.0 8.2e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|88603206|ref|YP_503384.1| - 1.7e-05 25.2 0.1 3.3e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|88603206|ref|YP_503384.1| - 0.00026 20.5 0.0 0.00066 19.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|88603206|ref|YP_503384.1| - 0.0007 19.7 0.0 0.0017 18.5 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|88603206|ref|YP_503384.1| - 0.0032 17.4 0.0 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|88603206|ref|YP_503384.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|88603206|ref|YP_503384.1| - 0.015 15.1 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|88603206|ref|YP_503384.1| - 0.026 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|88603206|ref|YP_503384.1| - 0.035 13.9 0.0 0.069 13.0 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|88603206|ref|YP_503384.1| - 0.038 13.9 0.0 0.087 12.8 0.0 1.7 1 1 0 1 1 1 0 HTH domain YjbF PF11102.8 gi|88603206|ref|YP_503384.1| - 0.072 12.9 0.1 0.092 12.5 0.1 1.1 1 0 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HTH_54 PF18607.1 gi|88603206|ref|YP_503384.1| - 0.082 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain DUF5509 PF17625.2 gi|88603207|ref|YP_503385.1| - 0.13 11.4 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5509) MCPsignal PF00015.21 gi|88603208|ref|YP_503386.1| - 4.5e-43 147.0 16.0 4.5e-43 147.0 16.0 4.2 3 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|88603208|ref|YP_503386.1| - 5.6e-18 65.1 6.9 8.2e-11 42.1 0.1 5.3 4 1 1 5 5 4 3 HAMP domain dCache_1 PF02743.18 gi|88603208|ref|YP_503386.1| - 6.2e-12 45.8 0.0 6.2e-12 45.8 0.0 3.1 4 0 0 4 4 4 1 Cache domain DUF4131 PF13567.6 gi|88603208|ref|YP_503386.1| - 0.0047 16.6 0.0 0.18 11.4 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4131) Glyco_hydro_15 PF00723.21 gi|88603208|ref|YP_503386.1| - 0.0093 14.8 0.0 0.012 14.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 DUF3185 PF11381.8 gi|88603208|ref|YP_503386.1| - 0.015 15.3 0.2 0.015 15.3 0.2 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF3185) DUF948 PF06103.11 gi|88603208|ref|YP_503386.1| - 0.051 13.8 29.5 0.89 9.9 2.3 7.1 5 2 2 7 7 6 0 Bacterial protein of unknown function (DUF948) G0-G1_switch_2 PF15103.6 gi|88603208|ref|YP_503386.1| - 0.058 13.8 0.6 1 9.8 0.1 2.8 2 1 0 2 2 2 0 G0/G1 switch protein 2 DUF4064 PF13273.6 gi|88603208|ref|YP_503386.1| - 0.076 13.3 4.7 0.36 11.1 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Lant_dehydr_C PF14028.6 gi|88603208|ref|YP_503386.1| - 0.24 10.9 3.4 0.14 11.6 0.2 2.2 2 0 0 2 2 2 0 Lantibiotic biosynthesis dehydratase C-term SlyX PF04102.12 gi|88603208|ref|YP_503386.1| - 1 10.0 10.4 30 5.3 0.0 5.2 5 0 0 5 5 5 0 SlyX Syntaxin_2 PF14523.6 gi|88603208|ref|YP_503386.1| - 1.6 9.2 12.4 5 7.6 0.2 4.4 4 1 2 6 6 5 0 Syntaxin-like protein Syntaxin PF00804.25 gi|88603208|ref|YP_503386.1| - 4.8 6.8 14.8 0.9 9.2 0.1 4.1 2 1 3 5 5 5 0 Syntaxin Nmad5 PF18757.1 gi|88603208|ref|YP_503386.1| - 6.8 6.8 8.5 20 5.3 2.1 2.8 2 1 1 3 3 3 0 Nucleotide modification associated domain 5 DUF4559 PF15112.6 gi|88603208|ref|YP_503386.1| - 7.7 6.1 11.4 1.1 8.9 2.4 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) FlgN PF05130.12 gi|88603208|ref|YP_503386.1| - 9.8 6.7 18.1 0.25 11.9 1.0 3.8 4 1 1 5 5 4 0 FlgN protein SBP_bac_3 PF00497.20 gi|88603209|ref|YP_503387.1| - 4.6e-39 134.2 0.0 1.1e-38 132.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Phage_Gp23 PF10669.9 gi|88603209|ref|YP_503387.1| - 0.00012 22.3 1.0 0.00042 20.6 1.0 1.9 1 0 0 1 1 1 1 Protein gp23 (Bacteriophage A118) PAS_9 PF13426.7 gi|88603209|ref|YP_503387.1| - 0.0016 18.7 0.0 0.0068 16.6 0.0 2.2 1 1 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88603209|ref|YP_503387.1| - 0.003 17.6 1.8 0.2 11.7 0.0 3.5 2 1 1 3 3 2 1 PAS fold Nup54 PF13874.6 gi|88603209|ref|YP_503387.1| - 0.0082 16.3 2.9 0.0082 16.3 2.9 1.8 2 0 0 2 2 2 1 Nucleoporin complex subunit 54 HisKA PF00512.25 gi|88603209|ref|YP_503387.1| - 0.012 15.6 2.0 0.035 14.1 0.1 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF1664 PF07889.12 gi|88603209|ref|YP_503387.1| - 0.013 15.5 0.5 0.013 15.5 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Lig_chan-Glu_bd PF10613.9 gi|88603209|ref|YP_503387.1| - 0.023 14.9 0.0 0.35 11.1 0.0 2.4 1 1 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site FTA4 PF13093.6 gi|88603209|ref|YP_503387.1| - 0.025 14.5 0.1 0.025 14.5 0.1 1.9 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 FUSC PF04632.12 gi|88603209|ref|YP_503387.1| - 0.041 12.4 0.1 0.097 11.2 0.0 1.5 2 0 0 2 2 2 0 Fusaric acid resistance protein family FUSC-like PF12805.7 gi|88603209|ref|YP_503387.1| - 0.05 12.7 0.6 0.085 11.9 0.6 1.3 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS PAS_8 PF13188.7 gi|88603209|ref|YP_503387.1| - 0.066 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 PAS domain AAA_23 PF13476.6 gi|88603209|ref|YP_503387.1| - 0.18 12.3 5.0 0.15 12.5 0.6 2.3 2 0 0 2 2 2 0 AAA domain CREPT PF16566.5 gi|88603209|ref|YP_503387.1| - 1.6 8.9 14.7 0.3 11.2 7.8 2.2 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour COX16 PF14138.6 gi|88603209|ref|YP_503387.1| - 1.6 9.3 3.8 5.2 7.6 1.2 2.7 2 1 1 3 3 3 0 Cytochrome c oxidase assembly protein COX16 UPF0242 PF06785.11 gi|88603209|ref|YP_503387.1| - 2.1 8.4 13.8 0.16 12.1 8.3 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HNH PF01844.23 gi|88603210|ref|YP_503388.1| - 3.8e-07 30.2 0.3 3.8e-07 30.2 0.3 1.8 2 0 0 2 2 2 1 HNH endonuclease RecA_dep_nuc PF16786.5 gi|88603210|ref|YP_503388.1| - 4.2e-05 23.6 0.3 8.8e-05 22.6 0.3 1.5 1 0 0 1 1 1 1 Recombination enhancement, RecA-dependent nuclease HNH_2 PF13391.6 gi|88603210|ref|YP_503388.1| - 0.00078 19.5 2.3 0.0017 18.4 0.5 2.5 2 1 0 2 2 2 1 HNH endonuclease HNH_5 PF14279.6 gi|88603210|ref|YP_503388.1| - 0.0034 17.2 0.2 0.007 16.2 0.2 1.5 1 0 0 1 1 1 1 HNH endonuclease DUF4485 PF14846.6 gi|88603210|ref|YP_503388.1| - 0.067 13.2 0.2 0.24 11.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4485) Lactamase_B PF00753.27 gi|88603211|ref|YP_503389.1| - 3.2e-11 43.6 0.2 4.6e-11 43.1 0.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88603211|ref|YP_503389.1| - 5e-06 26.2 0.5 1.2e-05 24.9 0.5 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|88603211|ref|YP_503389.1| - 0.00051 19.5 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain ArsC PF03960.15 gi|88603211|ref|YP_503389.1| - 0.013 15.5 0.0 0.042 13.9 0.0 1.8 1 0 0 1 1 1 0 ArsC family ATPase PF06745.13 gi|88603211|ref|YP_503389.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 KaiC Lactamase_B_3 PF13483.6 gi|88603211|ref|YP_503389.1| - 0.13 12.2 0.1 2.7 7.8 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase superfamily domain MMPL PF03176.15 gi|88603212|ref|YP_503390.1| - 2.7e-49 167.9 22.7 8.2e-26 90.7 7.1 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|88603212|ref|YP_503390.1| - 3.4e-09 36.7 20.5 5.1e-07 29.6 7.0 2.9 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|88603212|ref|YP_503390.1| - 1.1e-08 34.7 34.6 5.4e-08 32.4 12.8 2.6 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 gi|88603212|ref|YP_503390.1| - 1.5e-08 32.9 29.4 1.6e-06 26.2 11.2 2.7 2 1 1 3 3 3 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|88603212|ref|YP_503390.1| - 0.00026 19.2 7.5 0.00026 19.2 7.5 2.2 2 0 0 2 2 2 2 Patched family PAS_3 PF08447.12 gi|88603213|ref|YP_503391.1| - 2e-29 101.7 0.4 8.6e-17 61.2 0.2 2.8 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|88603213|ref|YP_503391.1| - 7.9e-20 71.1 0.0 2.4e-19 69.5 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88603213|ref|YP_503391.1| - 9.1e-17 61.1 0.1 1.8e-15 56.9 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88603213|ref|YP_503391.1| - 2.9e-13 50.0 0.0 2e-10 40.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|88603213|ref|YP_503391.1| - 7.3e-13 48.7 0.1 2.9e-12 46.8 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|88603213|ref|YP_503391.1| - 5.1e-10 39.8 0.0 1.1e-09 38.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88603213|ref|YP_503391.1| - 3.4e-09 36.8 0.1 0.0025 17.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_12 PF18095.1 gi|88603213|ref|YP_503391.1| - 0.0016 18.1 0.2 0.016 14.9 0.0 2.5 3 0 0 3 3 3 1 UPF0242 C-terminal PAS-like domain AAA_lid_8 PF17868.1 gi|88603213|ref|YP_503391.1| - 0.005 16.7 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain PAS_8 PF13188.7 gi|88603213|ref|YP_503391.1| - 0.0094 16.0 0.0 0.032 14.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain TyeA PF09059.10 gi|88603213|ref|YP_503391.1| - 0.035 14.2 0.0 0.68 10.1 0.0 2.5 2 0 0 2 2 2 0 TyeA HisKA PF00512.25 gi|88603213|ref|YP_503391.1| - 0.14 12.2 0.3 0.54 10.3 0.0 2.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain KH_9 PF17904.1 gi|88603213|ref|YP_503391.1| - 0.14 12.6 0.2 5.2 7.5 0.0 3.2 3 0 0 3 3 3 0 FMRP KH0 domain HATPase_c PF02518.26 gi|88603214|ref|YP_503392.1| - 1.9e-10 41.2 0.0 3.6e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|88603214|ref|YP_503392.1| - 0.0017 18.7 0.0 0.0043 17.4 0.0 1.7 1 0 0 1 1 1 1 HAMP domain OGG_N PF07934.12 gi|88603214|ref|YP_503392.1| - 0.072 13.2 0.5 1.7 8.8 0.3 2.4 2 0 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain DUF2004 PF09406.10 gi|88603214|ref|YP_503392.1| - 0.11 12.8 0.0 1.1 9.7 0.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2004) DUF3784 PF12650.7 gi|88603214|ref|YP_503392.1| - 0.16 12.2 1.9 6.7 7.0 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) DUF2417 PF10329.9 gi|88603214|ref|YP_503392.1| - 0.88 8.9 3.2 0.45 9.9 0.2 1.8 2 0 0 2 2 2 0 Region of unknown function (DUF2417) DUF3149 PF11346.8 gi|88603214|ref|YP_503392.1| - 6.8 6.4 6.6 1.7 8.3 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) Lactamase_B PF00753.27 gi|88603215|ref|YP_503393.1| - 0.0035 17.4 0.4 0.086 12.8 0.3 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily AAA-ATPase_like PF09820.9 gi|88603216|ref|YP_503394.1| - 1.1e-95 320.3 0.0 1.7e-95 319.7 0.0 1.3 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88603216|ref|YP_503394.1| - 7.7e-33 112.6 0.0 1.2e-32 112.0 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3903 PF13043.6 gi|88603216|ref|YP_503394.1| - 0.21 11.4 0.2 0.65 9.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3903) Response_reg PF00072.24 gi|88603217|ref|YP_503395.1| - 1.4e-26 92.9 0.1 1.6e-26 92.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|88603217|ref|YP_503395.1| - 0.0053 17.1 0.0 0.0067 16.8 0.0 1.2 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ DUF1400 PF07176.11 gi|88603217|ref|YP_503395.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) LSDAT_euk PF18139.1 gi|88603217|ref|YP_503395.1| - 0.14 11.5 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 SLOG in TRPM FIST PF08495.10 gi|88603217|ref|YP_503395.1| - 0.15 12.0 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 FIST N domain PEGA PF08308.11 gi|88603218|ref|YP_503396.1| - 0.18 11.7 2.7 4.4 7.3 0.5 2.8 2 1 0 2 2 2 0 PEGA domain ABC_ATPase PF09818.9 gi|88603219|ref|YP_503397.1| - 1.1e-96 324.4 0.0 1.3e-96 324.1 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|88603219|ref|YP_503397.1| - 9.6e-05 22.9 0.1 0.00031 21.3 0.1 1.7 2 0 0 2 2 2 1 ABC transporter AAA_23 PF13476.6 gi|88603219|ref|YP_503397.1| - 0.00093 19.7 0.1 0.0014 19.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88603219|ref|YP_503397.1| - 0.00098 18.8 0.3 0.0021 17.8 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Beta_propel PF09826.9 gi|88603222|ref|YP_503400.1| - 1.7e-165 551.8 0.0 2e-165 551.5 0.0 1.0 1 0 0 1 1 1 1 Beta propeller domain LVIVD PF08309.11 gi|88603222|ref|YP_503400.1| - 0.0008 18.7 5.7 5 6.5 0.0 5.2 5 0 0 5 5 5 2 LVIVD repeat CE2_N PF17996.1 gi|88603222|ref|YP_503400.1| - 0.083 12.9 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal SH3_1 PF00018.28 gi|88603222|ref|YP_503400.1| - 0.18 11.4 3.1 10 5.8 0.0 3.9 4 0 0 4 4 4 0 SH3 domain SH3_9 PF14604.6 gi|88603222|ref|YP_503400.1| - 2.1 8.3 5.1 1.5e+02 2.3 1.0 4.3 3 1 1 4 4 4 0 Variant SH3 domain Fer4 PF00037.27 gi|88603223|ref|YP_503401.1| - 9.7e-20 69.5 36.1 8.9e-07 28.5 0.5 4.5 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603223|ref|YP_503401.1| - 1.6e-17 63.8 22.1 1.3e-08 35.3 8.0 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603223|ref|YP_503401.1| - 3.8e-16 58.9 29.1 8.9e-08 32.1 12.6 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603223|ref|YP_503401.1| - 1.8e-15 56.3 32.4 0.00021 21.2 3.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603223|ref|YP_503401.1| - 3.1e-15 56.1 57.2 1.1e-06 28.6 10.9 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603223|ref|YP_503401.1| - 5.9e-14 52.3 20.6 3.9e-07 30.4 8.5 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603223|ref|YP_503401.1| - 8e-14 50.8 36.4 0.00036 20.5 2.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603223|ref|YP_503401.1| - 3.7e-12 46.2 31.7 8.3e-07 29.1 12.2 3.8 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603223|ref|YP_503401.1| - 2.8e-11 43.0 31.1 0.0062 17.0 1.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603223|ref|YP_503401.1| - 6.1e-11 43.1 26.2 2.2e-05 25.3 9.4 3.8 2 1 2 4 4 4 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88603223|ref|YP_503401.1| - 3.4e-09 37.1 25.3 4.3e-05 24.0 7.5 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603223|ref|YP_503401.1| - 5.5e-08 33.2 42.9 0.067 14.2 4.2 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88603223|ref|YP_503401.1| - 1.8e-05 25.4 18.6 0.15 12.8 0.5 4.3 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|88603223|ref|YP_503401.1| - 0.00044 20.7 35.0 0.011 16.2 0.7 4.6 4 1 1 5 5 5 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88603223|ref|YP_503401.1| - 0.001 19.9 28.3 0.13 13.1 0.6 4.2 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|88603223|ref|YP_503401.1| - 0.52 10.1 0.1 0.52 10.1 0.1 3.8 2 1 0 3 3 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|88603223|ref|YP_503401.1| - 0.65 10.2 27.9 27 5.0 2.3 4.3 2 1 0 3 3 3 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|88603224|ref|YP_503402.1| - 1.3e-19 70.3 0.1 2.1e-19 69.6 0.1 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|88603224|ref|YP_503402.1| - 9.6e-15 54.2 0.1 2.2e-14 53.0 0.1 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|88603224|ref|YP_503402.1| - 2.8e-09 36.4 19.7 4e-06 26.4 1.2 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603224|ref|YP_503402.1| - 1.9e-08 34.3 26.5 2.6e-07 30.7 12.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603224|ref|YP_503402.1| - 2.9e-08 34.2 11.4 2.9e-08 34.2 11.4 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603224|ref|YP_503402.1| - 8.3e-08 32.2 11.3 5.7e-05 23.1 0.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603224|ref|YP_503402.1| - 1.3e-05 25.2 12.1 1.3e-05 25.2 12.1 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603224|ref|YP_503402.1| - 2.5e-05 25.1 11.6 0.0093 16.9 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|88603224|ref|YP_503402.1| - 3.1e-05 23.8 11.3 0.00081 19.3 0.9 3.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603224|ref|YP_503402.1| - 3.9e-05 23.5 11.9 0.00024 21.0 2.3 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603224|ref|YP_503402.1| - 0.00088 19.7 12.0 0.033 14.7 0.1 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603224|ref|YP_503402.1| - 0.0025 18.5 8.5 2.6 8.9 1.5 3.5 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|88603224|ref|YP_503402.1| - 0.015 15.8 23.3 0.016 15.7 1.6 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88603224|ref|YP_503402.1| - 0.018 15.6 11.3 0.047 14.2 2.0 2.9 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88603224|ref|YP_503402.1| - 0.026 14.7 11.4 0.11 12.7 11.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603224|ref|YP_503402.1| - 0.039 14.9 27.1 0.074 14.0 4.7 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603224|ref|YP_503402.1| - 0.43 11.5 16.5 0.53 11.2 1.6 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603224|ref|YP_503402.1| - 1.6 9.4 14.7 7.4 7.2 2.3 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Nitroreductase PF00881.24 gi|88603225|ref|YP_503403.1| - 1.7e-23 83.6 0.0 2e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF5594 PF18057.1 gi|88603225|ref|YP_503403.1| - 0.0048 16.7 0.0 0.009 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5594) TM1586_NiRdase PF14512.6 gi|88603225|ref|YP_503403.1| - 0.019 14.6 0.0 0.38 10.3 0.0 2.0 2 0 0 2 2 2 0 Putative TM nitroreductase MoeA_N PF03453.17 gi|88603226|ref|YP_503404.1| - 1.1e-27 96.8 0.0 2e-27 95.9 0.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|88603226|ref|YP_503404.1| - 2e-19 69.7 0.1 3.3e-19 69.0 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|88603226|ref|YP_503404.1| - 0.00094 18.3 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|88603227|ref|YP_503405.1| - 4.1e-36 124.1 0.7 6.5e-36 123.5 0.7 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|88603227|ref|YP_503405.1| - 1.1e-20 73.8 0.3 6e-20 71.4 0.2 2.0 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|88603227|ref|YP_503405.1| - 1.1e-14 54.3 0.0 4.5e-14 52.4 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|88603228|ref|YP_503406.1| - 3.5e-34 117.8 0.0 5.4e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|88603228|ref|YP_503406.1| - 3.3e-18 65.7 0.0 6.7e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|88603228|ref|YP_503406.1| - 4.5e-09 36.4 0.0 2.9e-08 33.8 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|88603229|ref|YP_503407.1| - 4.6e-42 144.3 0.0 5.4e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88603229|ref|YP_503407.1| - 1.6e-07 31.6 0.3 1.3e-06 28.6 0.3 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|88603229|ref|YP_503407.1| - 0.0048 16.3 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1310 PF07006.11 gi|88603229|ref|YP_503407.1| - 0.073 13.1 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1310) SBP_bac_8 PF13416.6 gi|88603229|ref|YP_503407.1| - 0.13 12.0 0.0 12 5.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|88603230|ref|YP_503408.1| - 2.7e-17 63.1 18.7 2.7e-17 63.1 18.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|88603231|ref|YP_503409.1| - 1.1e-33 116.7 0.0 1.6e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|88603231|ref|YP_503409.1| - 5.8e-06 26.5 0.0 1.4e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|88603231|ref|YP_503409.1| - 0.00018 21.6 0.0 0.00039 20.5 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|88603231|ref|YP_503409.1| - 0.00042 20.2 1.7 0.019 14.8 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88603231|ref|YP_503409.1| - 0.0022 17.7 0.1 0.0046 16.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|88603231|ref|YP_503409.1| - 0.017 14.6 0.0 5.6 6.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|88603231|ref|YP_503409.1| - 0.021 15.2 0.0 0.034 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain HOK_GEF PF01848.16 gi|88603231|ref|YP_503409.1| - 0.028 13.8 0.0 0.064 12.7 0.0 1.6 1 0 0 1 1 1 0 Hok/gef family SbcCD_C PF13558.6 gi|88603231|ref|YP_503409.1| - 0.053 13.8 0.0 1.2 9.5 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|88603231|ref|YP_503409.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|88603231|ref|YP_503409.1| - 0.068 13.7 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|88603231|ref|YP_503409.1| - 0.076 12.7 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|88603231|ref|YP_503409.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|88603231|ref|YP_503409.1| - 0.14 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|88603231|ref|YP_503409.1| - 0.14 12.5 0.1 0.68 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain GXGXG PF01493.19 gi|88603232|ref|YP_503410.1| - 3.8e-10 39.7 15.3 7.4e-10 38.7 15.3 1.5 1 0 0 1 1 1 1 GXGXG motif Laminin_G_1 PF00054.23 gi|88603232|ref|YP_503410.1| - 0.0072 16.5 0.5 0.82 9.9 0.1 3.0 1 1 1 2 2 2 1 Laminin G domain HTH_33 PF13592.6 gi|88603232|ref|YP_503410.1| - 0.034 13.8 0.2 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_32 PF13565.6 gi|88603232|ref|YP_503410.1| - 0.13 12.9 0.0 0.21 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Gp5_C PF06715.12 gi|88603232|ref|YP_503410.1| - 3.7 7.9 5.4 8.9 6.7 1.1 3.5 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) FapA PF03961.13 gi|88603232|ref|YP_503410.1| - 6.9 5.2 13.7 12 4.4 12.2 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Amidohydro_3 PF07969.11 gi|88603233|ref|YP_503411.1| - 1.9e-76 258.5 0.0 2.3e-76 258.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|88603233|ref|YP_503411.1| - 3.6e-08 33.1 0.1 5.3e-07 29.3 0.0 2.3 2 1 0 2 2 2 1 Amidohydrolase family Molybdopterin PF00384.22 gi|88603234|ref|YP_503412.1| - 9.6e-13 47.9 0.0 2.8e-12 46.4 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|88603234|ref|YP_503412.1| - 0.11 12.3 0.0 24 4.7 0.0 3.2 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.21 gi|88603235|ref|YP_503413.1| - 3.9e-17 62.3 0.0 4.8e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FmdE PF02663.14 gi|88603236|ref|YP_503414.1| - 1.7e-24 86.4 0.0 2.3e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DZR PF12773.7 gi|88603236|ref|YP_503414.1| - 0.057 13.5 0.5 0.13 12.3 0.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|88603236|ref|YP_503414.1| - 0.29 10.9 5.8 2 8.3 5.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|88603236|ref|YP_503414.1| - 0.64 9.6 4.9 1.5 8.4 0.5 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zf-dskA_traR PF01258.17 gi|88603236|ref|YP_503414.1| - 2.2 8.3 5.0 8.4 6.4 4.2 2.2 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lzipper-MIP1 PF14389.6 gi|88603237|ref|YP_503415.1| - 0.072 13.4 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Molydop_binding PF01568.21 gi|88603238|ref|YP_503416.1| - 2.1e-12 47.1 0.0 2.8e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|88603239|ref|YP_503417.1| - 5.9e-15 55.2 0.0 3e-14 52.8 0.0 2.0 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Amidohydro_3 PF07969.11 gi|88603240|ref|YP_503418.1| - 8.2e-67 226.7 0.0 1.1e-66 226.2 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|88603240|ref|YP_503418.1| - 0.0053 16.1 0.1 0.49 9.6 0.1 2.5 2 0 0 2 2 2 2 Amidohydrolase family GXGXG PF01493.19 gi|88603241|ref|YP_503419.1| - 7.3e-11 42.0 18.1 6e-10 39.0 16.9 2.1 1 1 1 2 2 2 2 GXGXG motif DIM PF08194.12 gi|88603241|ref|YP_503419.1| - 0.32 11.2 1.0 18 5.6 0.0 3.5 3 0 0 3 3 3 0 DIM protein Methyltransf_2 PF00891.18 gi|88603242|ref|YP_503420.1| - 5.2e-05 22.6 0.0 8.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|88603242|ref|YP_503420.1| - 0.00058 19.8 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_11 PF08241.12 gi|88603242|ref|YP_503420.1| - 0.0028 18.3 0.0 0.027 15.1 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88603242|ref|YP_503420.1| - 0.041 14.6 0.0 0.093 13.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603242|ref|YP_503420.1| - 0.058 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Dimerisation PF08100.11 gi|88603242|ref|YP_503420.1| - 0.12 12.4 0.0 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 Dimerisation domain Molydop_binding PF01568.21 gi|88603244|ref|YP_503422.1| - 3.1e-10 40.0 0.0 3.8e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|88603245|ref|YP_503423.1| - 1e-17 64.2 0.0 1.2e-14 54.1 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Peripla_BP_2 PF01497.18 gi|88603246|ref|YP_503424.1| - 8.5e-24 84.4 0.0 1e-23 84.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.12 gi|88603247|ref|YP_503425.1| - 3.5e-22 78.8 0.0 7.1e-22 77.9 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88603247|ref|YP_503425.1| - 1.2e-20 74.0 0.0 2.1e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603247|ref|YP_503425.1| - 3e-18 66.1 0.0 4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88603247|ref|YP_503425.1| - 2.8e-12 46.5 0.0 3.5e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|88603247|ref|YP_503425.1| - 8e-12 45.8 0.0 1.6e-11 44.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88603247|ref|YP_503425.1| - 1.6e-08 34.6 0.0 2.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88603247|ref|YP_503425.1| - 0.00017 21.2 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|88603247|ref|YP_503425.1| - 0.0002 21.3 0.0 0.00067 19.6 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|88603247|ref|YP_503425.1| - 0.00041 20.4 0.0 0.00078 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|88603247|ref|YP_503425.1| - 0.001 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88603247|ref|YP_503425.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|88603247|ref|YP_503425.1| - 0.0014 17.3 0.0 0.0014 17.3 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|88603247|ref|YP_503425.1| - 0.0017 17.7 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|88603247|ref|YP_503425.1| - 0.025 14.3 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein ADH_zinc_N PF00107.26 gi|88603247|ref|YP_503425.1| - 0.05 13.6 0.0 6.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_3 PF01596.17 gi|88603247|ref|YP_503425.1| - 0.064 12.4 0.0 0.095 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PCMT PF01135.19 gi|88603247|ref|YP_503425.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|88603247|ref|YP_503425.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|88603247|ref|YP_503425.1| - 0.14 11.1 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Radical_SAM PF04055.21 gi|88603248|ref|YP_503426.1| - 5.3e-09 36.7 0.1 3.3e-08 34.1 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Peripla_BP_2 PF01497.18 gi|88603248|ref|YP_503426.1| - 5.5e-07 29.4 0.0 7.9e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.6 gi|88603248|ref|YP_503426.1| - 0.00041 20.6 0.1 0.0014 18.9 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|88603248|ref|YP_503426.1| - 0.00098 19.2 0.2 0.0041 17.3 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.19 gi|88603248|ref|YP_503426.1| - 1.2 9.0 7.1 12 5.8 0.1 3.9 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|88603248|ref|YP_503426.1| - 3 7.4 10.8 1.9 8.1 0.1 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Peripla_BP_2 PF01497.18 gi|88603250|ref|YP_503428.1| - 5.2e-28 98.2 0.0 6.7e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Radical_SAM PF04055.21 gi|88603251|ref|YP_503429.1| - 2.2e-07 31.4 0.2 5.1e-07 30.2 0.2 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88603251|ref|YP_503429.1| - 0.033 14.5 0.1 0.078 13.2 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain CK_II_beta PF01214.18 gi|88603251|ref|YP_503429.1| - 0.64 9.8 1.9 0.87 9.4 0.3 2.0 2 0 0 2 2 2 0 Casein kinase II regulatory subunit zf-C4_Topoisom PF01396.19 gi|88603251|ref|YP_503429.1| - 2.2 8.2 10.3 2.1 8.2 0.0 3.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|88603251|ref|YP_503429.1| - 8.2 6.0 7.8 1.6 8.2 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Methyltransf_25 PF13649.6 gi|88603253|ref|YP_503431.1| - 3.9e-14 53.1 0.0 7.6e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88603253|ref|YP_503431.1| - 1.6e-11 44.7 0.0 3.6e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88603253|ref|YP_503431.1| - 2.2e-08 34.8 0.0 4.9e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603253|ref|YP_503431.1| - 6.7e-08 32.5 0.0 1.2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88603253|ref|YP_503431.1| - 9.8e-08 32.0 0.0 2e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|88603253|ref|YP_503431.1| - 2.1e-05 24.0 0.0 3.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|88603253|ref|YP_503431.1| - 7.5e-05 22.3 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|88603253|ref|YP_503431.1| - 0.0012 18.3 0.0 0.0024 17.2 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|88603253|ref|YP_503431.1| - 0.0018 17.6 0.0 0.0034 16.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|88603253|ref|YP_503431.1| - 0.0034 17.0 0.0 0.0049 16.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|88603253|ref|YP_503431.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88603253|ref|YP_503431.1| - 0.012 14.7 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|88603253|ref|YP_503431.1| - 0.035 13.5 0.0 0.063 12.7 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|88603253|ref|YP_503431.1| - 0.049 13.2 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase DREV PF05219.12 gi|88603253|ref|YP_503431.1| - 0.059 12.5 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase MetW PF07021.12 gi|88603253|ref|YP_503431.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|88603253|ref|YP_503431.1| - 0.12 12.4 0.0 0.42 10.6 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain GidB PF02527.15 gi|88603253|ref|YP_503431.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G TOBE PF03459.17 gi|88603254|ref|YP_503432.1| - 5.2e-16 58.7 0.1 5.7e-16 58.6 0.1 1.0 1 0 0 1 1 1 1 TOBE domain Fis1_TPR_N PF14852.6 gi|88603254|ref|YP_503432.1| - 0.054 13.2 0.2 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat FmdE PF02663.14 gi|88603255|ref|YP_503433.1| - 2.7e-31 108.4 0.0 3.7e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|88603255|ref|YP_503433.1| - 1.1e-07 31.6 0.1 1.9e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger GFA PF04828.14 gi|88603255|ref|YP_503433.1| - 0.017 15.5 0.1 0.035 14.5 0.1 1.6 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme C1_1 PF00130.22 gi|88603255|ref|YP_503433.1| - 0.025 14.5 0.9 0.045 13.6 0.9 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|88603255|ref|YP_503433.1| - 0.062 13.3 0.8 0.14 12.2 0.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon SpuA_C PF18033.1 gi|88603255|ref|YP_503433.1| - 0.082 13.0 0.0 0.44 10.6 0.0 2.1 3 0 0 3 3 3 0 SpuA C-terminal NOB1_Zn_bind PF08772.11 gi|88603255|ref|YP_503433.1| - 0.16 12.2 0.9 0.39 10.9 0.6 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.13 gi|88603255|ref|YP_503433.1| - 0.28 10.9 1.5 1.4 8.7 1.5 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF364 PF04016.12 gi|88603256|ref|YP_503434.1| - 2.3e-41 140.8 0.0 3.1e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|88603256|ref|YP_503434.1| - 1.3e-11 44.6 0.0 2.2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation B12-binding PF02310.19 gi|88603256|ref|YP_503434.1| - 0.031 14.3 0.1 1.7 8.7 0.1 2.3 2 0 0 2 2 2 0 B12 binding domain HD PF01966.22 gi|88603257|ref|YP_503435.1| - 0.062 13.5 0.3 0.098 12.9 0.3 1.3 1 0 0 1 1 1 0 HD domain Abhydrolase_1 PF00561.20 gi|88603258|ref|YP_503436.1| - 3.7e-10 39.9 0.0 8.9e-10 38.6 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|88603258|ref|YP_503436.1| - 2.1e-09 38.3 0.0 3.3e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|88603258|ref|YP_503436.1| - 0.00048 19.5 0.0 0.00079 18.8 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S28 PF05577.12 gi|88603258|ref|YP_503436.1| - 0.0077 15.1 0.0 0.02 13.7 0.0 1.6 2 0 0 2 2 2 1 Serine carboxypeptidase S28 Thioesterase PF00975.20 gi|88603258|ref|YP_503436.1| - 0.042 13.9 0.0 0.059 13.5 0.0 1.3 1 1 0 1 1 1 0 Thioesterase domain DUF2920 PF11144.8 gi|88603258|ref|YP_503436.1| - 0.057 12.6 0.0 0.084 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) ABC_tran PF00005.27 gi|88603259|ref|YP_503437.1| - 5.9e-32 111.1 0.0 8.1e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603259|ref|YP_503437.1| - 4.3e-10 39.9 0.0 5.7e-05 23.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603259|ref|YP_503437.1| - 1.7e-07 30.9 0.0 8.1e-07 28.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88603259|ref|YP_503437.1| - 3.8e-05 24.3 0.0 4.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88603259|ref|YP_503437.1| - 4.7e-05 23.1 0.0 7.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88603259|ref|YP_503437.1| - 6.3e-05 22.8 0.0 7.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|88603259|ref|YP_503437.1| - 0.0023 18.3 0.0 0.0025 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|88603259|ref|YP_503437.1| - 0.0052 17.0 0.1 0.087 13.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|88603259|ref|YP_503437.1| - 0.0065 16.4 0.0 0.017 15.0 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase MukB PF04310.12 gi|88603259|ref|YP_503437.1| - 0.018 14.9 0.0 0.034 13.9 0.0 1.5 1 1 0 1 1 1 0 MukB N-terminal NACHT PF05729.12 gi|88603259|ref|YP_503437.1| - 0.03 14.2 0.0 0.06 13.3 0.0 1.5 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|88603259|ref|YP_503437.1| - 0.039 13.2 0.0 0.088 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|88603259|ref|YP_503437.1| - 0.049 13.4 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|88603259|ref|YP_503437.1| - 0.071 12.8 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|88603259|ref|YP_503437.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|88603259|ref|YP_503437.1| - 0.13 12.5 0.0 0.18 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain TetR_C_7 PF14246.6 gi|88603259|ref|YP_503437.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain BPD_transp_1 PF00528.22 gi|88603260|ref|YP_503438.1| - 7.8e-18 64.9 18.3 7.8e-18 64.9 18.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|88603261|ref|YP_503439.1| - 7.3e-44 150.2 0.1 8.2e-44 150.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88603261|ref|YP_503439.1| - 1.3e-10 41.7 4.3 6.5e-05 23.0 0.1 2.2 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|88603261|ref|YP_503439.1| - 9.7e-06 25.6 4.4 0.005 16.7 0.4 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|88603261|ref|YP_503439.1| - 0.00055 19.4 0.3 0.0037 16.7 0.1 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 gi|88603261|ref|YP_503439.1| - 0.0043 16.7 0.7 0.0056 16.3 0.7 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like_2 PF12849.7 gi|88603261|ref|YP_503439.1| - 0.0051 16.5 1.0 0.0069 16.1 1.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|88603261|ref|YP_503439.1| - 0.035 13.2 0.0 0.075 12.1 0.0 1.5 1 1 0 1 1 1 0 PBP superfamily domain DUF5325 PF17259.2 gi|88603261|ref|YP_503439.1| - 0.079 12.8 0.3 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5325) TOBE PF03459.17 gi|88603262|ref|YP_503440.1| - 6.9e-14 51.9 0.0 7.5e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 TOBE domain NTPase_1 PF03266.15 gi|88603263|ref|YP_503441.1| - 1.1e-31 110.0 0.0 1.3e-31 109.8 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|88603263|ref|YP_503441.1| - 0.00012 21.8 0.0 0.00083 19.0 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) MobB PF03205.14 gi|88603263|ref|YP_503441.1| - 0.00084 19.2 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|88603263|ref|YP_503441.1| - 0.0012 18.6 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|88603263|ref|YP_503441.1| - 0.0023 17.8 0.1 0.01 15.8 0.1 1.8 2 0 0 2 2 2 1 NACHT domain DAP3 PF10236.9 gi|88603263|ref|YP_503441.1| - 0.0036 16.5 0.0 0.005 16.1 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.6 gi|88603263|ref|YP_503441.1| - 0.0082 16.5 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|88603263|ref|YP_503441.1| - 0.013 15.7 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|88603263|ref|YP_503441.1| - 0.022 15.0 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|88603263|ref|YP_503441.1| - 0.032 13.8 0.1 0.094 12.3 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|88603263|ref|YP_503441.1| - 0.038 14.5 0.0 0.048 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|88603263|ref|YP_503441.1| - 0.04 13.9 0.0 1.4 8.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|88603263|ref|YP_503441.1| - 0.08 12.9 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|88603263|ref|YP_503441.1| - 0.084 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|88603263|ref|YP_503441.1| - 0.093 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|88603263|ref|YP_503441.1| - 0.097 12.2 0.0 0.32 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|88603263|ref|YP_503441.1| - 0.11 12.1 0.0 0.36 10.4 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF2075 PF09848.9 gi|88603263|ref|YP_503441.1| - 0.12 11.6 0.1 0.25 10.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|88603263|ref|YP_503441.1| - 0.12 12.8 0.1 0.37 11.3 0.0 1.7 2 0 0 2 2 2 0 ABC transporter T2SSE PF00437.20 gi|88603263|ref|YP_503441.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PIF1 PF05970.14 gi|88603263|ref|YP_503441.1| - 0.16 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase XdhC_C PF13478.6 gi|88603264|ref|YP_503442.1| - 2.3e-32 112.1 0.0 3.1e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|88603264|ref|YP_503442.1| - 1.5e-16 60.3 0.0 2.9e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 XdhC and CoxI family DUF364 PF04016.12 gi|88603265|ref|YP_503443.1| - 2.6e-30 104.9 0.0 3.5e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|88603265|ref|YP_503443.1| - 1.2e-14 54.2 0.0 2.2e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Methyltransf_25 PF13649.6 gi|88603266|ref|YP_503444.1| - 1.2e-09 38.8 0.0 2.7e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603266|ref|YP_503444.1| - 3.1e-06 27.1 0.0 9.6e-06 25.5 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88603266|ref|YP_503444.1| - 4.4e-06 27.3 0.0 1.2e-05 25.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88603266|ref|YP_503444.1| - 1.1e-05 25.3 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88603266|ref|YP_503444.1| - 1.4e-05 25.7 0.0 3.1e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88603266|ref|YP_503444.1| - 1.6e-05 24.1 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|88603266|ref|YP_503444.1| - 9.7e-05 21.8 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|88603266|ref|YP_503444.1| - 0.00025 20.6 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.12 gi|88603266|ref|YP_503444.1| - 0.0028 16.8 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_15 PF09445.10 gi|88603266|ref|YP_503444.1| - 0.0081 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|88603266|ref|YP_503444.1| - 0.011 15.5 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|88603266|ref|YP_503444.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.16 gi|88603266|ref|YP_503444.1| - 0.032 14.0 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|88603266|ref|YP_503444.1| - 0.033 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|88603266|ref|YP_503444.1| - 0.048 13.0 0.0 0.048 13.0 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|88603266|ref|YP_503444.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|88603266|ref|YP_503444.1| - 0.085 12.8 0.0 0.2 11.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|88603266|ref|YP_503444.1| - 0.11 11.8 0.0 0.58 9.4 0.0 2.0 2 0 0 2 2 2 0 O-methyltransferase domain FecCD PF01032.18 gi|88603267|ref|YP_503445.1| - 5.1e-90 301.7 29.1 6e-90 301.4 29.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|88603267|ref|YP_503445.1| - 0.00018 21.1 18.1 0.00019 21.0 17.1 1.6 1 1 0 1 1 1 1 ABC 3 transport family GHMP_kinases_C PF08544.13 gi|88603267|ref|YP_503445.1| - 4.2 7.8 5.1 18 5.8 1.3 2.8 2 1 1 3 3 3 0 GHMP kinases C terminal ABC_tran PF00005.27 gi|88603268|ref|YP_503446.1| - 9.2e-30 103.9 0.0 1.2e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603268|ref|YP_503446.1| - 1.6e-14 54.4 0.1 8.9e-08 32.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603268|ref|YP_503446.1| - 1.8e-07 30.8 0.3 5e-06 26.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88603268|ref|YP_503446.1| - 4.3e-06 27.4 0.1 7.2e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AFG1_ATPase PF03969.16 gi|88603268|ref|YP_503446.1| - 2.6e-05 23.3 0.1 0.00047 19.1 0.0 2.0 2 0 0 2 2 2 1 AFG1-like ATPase AAA_29 PF13555.6 gi|88603268|ref|YP_503446.1| - 0.00015 21.4 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88603268|ref|YP_503446.1| - 0.00067 19.5 1.6 0.00098 18.9 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|88603268|ref|YP_503446.1| - 0.0011 19.3 0.1 0.01 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88603268|ref|YP_503446.1| - 0.0017 18.7 0.0 0.0026 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|88603268|ref|YP_503446.1| - 0.0027 16.6 0.0 1.6 7.5 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|88603268|ref|YP_503446.1| - 0.0035 17.1 0.0 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|88603268|ref|YP_503446.1| - 0.0041 16.9 0.1 0.009 15.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|88603268|ref|YP_503446.1| - 0.0052 17.2 0.0 0.025 15.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|88603268|ref|YP_503446.1| - 0.0093 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase Mg_chelatase PF01078.21 gi|88603268|ref|YP_503446.1| - 0.012 15.0 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|88603268|ref|YP_503446.1| - 0.013 15.2 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|88603268|ref|YP_503446.1| - 0.015 15.3 0.0 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|88603268|ref|YP_503446.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|88603268|ref|YP_503446.1| - 0.024 14.5 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PIF1 PF05970.14 gi|88603268|ref|YP_503446.1| - 0.03 13.5 0.0 0.045 12.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase SbcCD_C PF13558.6 gi|88603268|ref|YP_503446.1| - 0.038 14.2 0.0 0.45 10.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|88603268|ref|YP_503446.1| - 0.04 14.3 0.0 0.085 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|88603268|ref|YP_503446.1| - 0.046 14.1 0.1 0.14 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|88603268|ref|YP_503446.1| - 0.053 13.4 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|88603268|ref|YP_503446.1| - 0.061 13.3 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|88603268|ref|YP_503446.1| - 0.082 13.0 0.1 0.6 10.2 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.7 gi|88603268|ref|YP_503446.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_11 PF13086.6 gi|88603268|ref|YP_503446.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|88603268|ref|YP_503446.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATP-synt_ab PF00006.25 gi|88603268|ref|YP_503446.1| - 0.16 11.6 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 gi|88603268|ref|YP_503446.1| - 0.18 12.0 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|88603268|ref|YP_503446.1| - 0.2 11.6 0.0 0.57 10.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain FdhD-NarQ PF02634.15 gi|88603269|ref|YP_503447.1| - 1.8e-56 191.5 0.0 2.1e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family DUF5429 PF17494.2 gi|88603269|ref|YP_503447.1| - 0.16 12.0 0.2 0.78 9.8 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5429) FrhB_FdhB_C PF04432.13 gi|88603270|ref|YP_503448.1| - 1e-34 119.6 0.2 1e-34 119.6 0.2 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88603270|ref|YP_503448.1| - 5.5e-24 84.1 0.1 1.1e-23 83.2 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|88603270|ref|YP_503448.1| - 4.4e-07 30.4 13.5 4.4e-07 30.4 13.5 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603270|ref|YP_503448.1| - 3.1e-06 26.8 15.1 0.00027 20.6 2.8 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603270|ref|YP_503448.1| - 6e-05 23.1 22.3 0.00055 20.0 0.1 3.8 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603270|ref|YP_503448.1| - 0.00072 19.7 23.4 0.0081 16.3 20.2 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603270|ref|YP_503448.1| - 0.0017 18.9 18.8 0.0017 18.9 18.8 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603270|ref|YP_503448.1| - 0.0024 17.8 11.1 0.0094 16.0 1.7 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88603270|ref|YP_503448.1| - 0.0055 17.1 2.4 0.0055 17.1 2.4 4.4 4 1 1 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603270|ref|YP_503448.1| - 0.0078 16.3 1.6 0.0078 16.3 1.6 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603270|ref|YP_503448.1| - 0.012 15.8 13.4 0.78 10.0 0.3 3.7 3 1 0 3 3 3 0 4Fe-4S dicluster domain Lipoprotein_15 PF03640.15 gi|88603270|ref|YP_503448.1| - 0.071 12.7 0.1 0.18 11.4 0.1 1.7 1 0 0 1 1 1 0 Secreted repeat of unknown function Fer4_13 PF13370.6 gi|88603270|ref|YP_503448.1| - 0.084 13.4 19.5 0.39 11.3 2.7 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|88603270|ref|YP_503448.1| - 0.14 12.7 25.0 0.16 12.5 20.3 3.3 3 1 0 3 3 3 0 4Fe-4S dicluster domain DEK_C PF08766.11 gi|88603270|ref|YP_503448.1| - 0.14 12.1 0.0 0.54 10.2 0.0 1.9 2 0 0 2 2 1 0 DEK C terminal domain Fer4_21 PF14697.6 gi|88603270|ref|YP_503448.1| - 0.2 11.8 25.5 0.47 10.6 20.4 3.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603270|ref|YP_503448.1| - 0.22 12.5 0.2 0.22 12.5 0.2 3.8 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|88603270|ref|YP_503448.1| - 1.2 10.1 23.7 0.79 10.6 0.4 3.2 4 0 0 4 4 3 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 gi|88603270|ref|YP_503448.1| - 4.4 7.6 13.2 16 5.8 1.4 3.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_3 PF12798.7 gi|88603270|ref|YP_503448.1| - 5.3 8.2 32.2 0.17 12.9 3.5 3.9 4 0 0 4 4 2 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|88603271|ref|YP_503449.1| - 1.6e-88 297.6 0.0 1.9e-88 297.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|88603271|ref|YP_503449.1| - 2.4e-28 98.4 0.1 4.1e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|88603271|ref|YP_503449.1| - 4.9e-20 71.3 3.3 9.7e-20 70.3 3.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FrhB_FdhB_C PF04432.13 gi|88603272|ref|YP_503450.1| - 3.8e-33 114.5 1.6 3.8e-33 114.5 1.6 1.8 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88603272|ref|YP_503450.1| - 1e-20 73.6 0.1 1.7e-20 72.9 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|88603272|ref|YP_503450.1| - 4e-07 30.1 11.2 0.004 17.2 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603272|ref|YP_503450.1| - 8.2e-07 29.5 10.3 8.7e-07 29.4 7.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603272|ref|YP_503450.1| - 1.2e-06 28.6 7.2 1.2e-06 28.6 7.2 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603272|ref|YP_503450.1| - 1.2e-06 28.1 20.1 0.00021 21.0 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603272|ref|YP_503450.1| - 1.4e-05 25.4 11.8 3.6e-05 24.1 9.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603272|ref|YP_503450.1| - 0.00021 21.8 16.0 0.0021 18.6 14.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603272|ref|YP_503450.1| - 0.00067 19.7 15.0 0.0091 16.1 0.6 3.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603272|ref|YP_503450.1| - 0.0013 18.7 16.6 0.029 14.5 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88603272|ref|YP_503450.1| - 0.0016 18.6 7.5 0.17 12.1 0.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603272|ref|YP_503450.1| - 0.029 14.4 1.8 0.029 14.4 1.8 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88603272|ref|YP_503450.1| - 0.03 14.8 4.1 0.03 14.8 4.1 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603272|ref|YP_503450.1| - 0.041 14.7 11.3 0.36 11.7 0.6 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603272|ref|YP_503450.1| - 0.53 11.3 20.8 1.9 9.5 3.4 3.4 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain c-SKI_SMAD_bind PF08782.10 gi|88603272|ref|YP_503450.1| - 3.3 8.0 6.8 10 6.4 0.1 2.5 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Molybdopterin PF00384.22 gi|88603273|ref|YP_503451.1| - 7.9e-95 318.3 0.0 9.8e-95 318.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|88603273|ref|YP_503451.1| - 6.3e-28 97.0 0.1 2.7e-27 95.0 0.1 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|88603273|ref|YP_503451.1| - 1.2e-19 70.0 3.0 2.5e-19 69.0 3.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain HATPase_c PF02518.26 gi|88603274|ref|YP_503452.1| - 2.5e-19 69.8 0.6 5.1e-19 68.8 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|88603274|ref|YP_503452.1| - 2e-15 57.0 0.0 1.7e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88603274|ref|YP_503452.1| - 1.1e-13 51.4 0.3 3.4e-06 27.2 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88603274|ref|YP_503452.1| - 5.6e-11 42.4 0.0 2.6e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|88603274|ref|YP_503452.1| - 2.6e-10 40.5 0.0 9.5e-08 32.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|88603274|ref|YP_503452.1| - 3.5e-10 39.8 0.8 3.5e-10 39.8 0.8 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|88603274|ref|YP_503452.1| - 9.7e-05 22.2 0.0 0.00019 21.2 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88603274|ref|YP_503452.1| - 0.0053 16.7 0.0 0.065 13.2 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|88603274|ref|YP_503452.1| - 0.0053 16.9 0.0 1.2 9.3 0.0 3.0 3 0 0 3 3 3 1 PAS domain dCache_1 PF02743.18 gi|88603274|ref|YP_503452.1| - 0.016 15.0 0.0 0.12 12.1 0.0 2.2 1 1 1 2 2 2 0 Cache domain DDE_Tnp_1_6 PF13751.6 gi|88603275|ref|YP_503453.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88603275|ref|YP_503453.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88603275|ref|YP_503453.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88603275|ref|YP_503453.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain PAS PF00989.25 gi|88603276|ref|YP_503454.1| - 5.8e-29 100.4 0.0 1.4e-11 44.4 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|88603276|ref|YP_503454.1| - 6e-28 97.3 0.0 1.5e-10 41.3 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88603276|ref|YP_503454.1| - 1.5e-24 86.2 0.5 5e-13 49.2 0.0 3.7 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|88603276|ref|YP_503454.1| - 5.1e-18 65.3 0.0 3.1e-17 62.7 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 gi|88603276|ref|YP_503454.1| - 6.5e-16 58.0 0.0 0.00013 21.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|88603276|ref|YP_503454.1| - 2e-13 50.5 0.2 0.00015 22.0 0.1 3.7 3 1 0 3 3 3 3 PAS fold PAS_7 PF12860.7 gi|88603276|ref|YP_503454.1| - 0.00032 20.9 0.1 5 7.3 0.0 4.1 3 1 0 3 3 3 2 PAS fold MLTR_LBD PF17765.1 gi|88603276|ref|YP_503454.1| - 0.0076 16.4 0.0 0.65 10.1 0.0 3.0 3 0 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain PAS_10 PF13596.6 gi|88603276|ref|YP_503454.1| - 0.038 14.6 3.9 11 6.7 0.0 4.0 4 0 0 4 4 4 0 PAS domain QRPTase_C PF01729.19 gi|88603277|ref|YP_503455.1| - 2.1e-25 89.5 0.0 3.3e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|88603277|ref|YP_503455.1| - 1.1e-17 63.8 0.0 2.4e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TrkA_N PF02254.18 gi|88603277|ref|YP_503455.1| - 0.017 15.4 0.1 3 8.2 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain MatE PF01554.18 gi|88603278|ref|YP_503456.1| - 2.3e-57 193.1 49.4 2.8e-36 124.6 16.1 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|88603278|ref|YP_503456.1| - 1.8e-09 37.8 13.3 1.8e-09 37.8 13.3 5.7 2 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Mid2 PF04478.12 gi|88603278|ref|YP_503456.1| - 0.41 10.5 1.8 0.81 9.5 0.1 2.4 2 0 0 2 2 2 0 Mid2 like cell wall stress sensor Tubulin PF00091.25 gi|88603278|ref|YP_503456.1| - 0.48 10.6 2.0 8.5 6.5 0.4 2.2 2 0 0 2 2 2 0 Tubulin/FtsZ family, GTPase domain MFS_1 PF07690.16 gi|88603279|ref|YP_503457.1| - 6.1e-49 166.8 48.9 6.1e-49 166.8 48.9 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88603279|ref|YP_503457.1| - 4.3e-13 48.9 40.7 1.7e-08 33.8 8.0 2.7 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|88603279|ref|YP_503457.1| - 3.9e-05 22.2 6.0 3.9e-05 22.2 6.0 2.7 2 1 1 3 3 3 2 Transmembrane secretion effector DUF3278 PF11683.8 gi|88603279|ref|YP_503457.1| - 0.74 9.9 4.6 1.5 8.9 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3278) Response_reg PF00072.24 gi|88603280|ref|YP_503458.1| - 4e-15 56.0 0.0 5.8e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88603281|ref|YP_503459.1| - 1.4e-54 183.0 0.0 2e-10 40.9 0.0 8.3 7 2 0 7 7 7 6 PAS fold PAS PF00989.25 gi|88603281|ref|YP_503459.1| - 2e-49 166.3 0.0 6.1e-09 35.9 0.0 7.6 7 0 0 7 7 7 7 PAS fold PAS_9 PF13426.7 gi|88603281|ref|YP_503459.1| - 6.5e-45 151.7 12.9 1.9e-08 34.5 0.0 7.9 8 0 0 8 8 8 7 PAS domain MCPsignal PF00015.21 gi|88603281|ref|YP_503459.1| - 6.9e-40 136.7 20.6 6.9e-40 136.7 20.6 4.7 3 1 0 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_8 PF13188.7 gi|88603281|ref|YP_503459.1| - 3.4e-32 109.9 0.4 0.0014 18.6 0.0 8.9 9 0 0 9 9 9 6 PAS domain PAS_3 PF08447.12 gi|88603281|ref|YP_503459.1| - 4.3e-10 39.7 0.0 0.086 13.1 0.0 4.5 4 0 0 4 4 3 3 PAS fold PhageMin_Tail PF10145.9 gi|88603281|ref|YP_503459.1| - 0.0056 16.6 17.5 0.0056 16.6 17.5 3.7 2 1 1 3 3 3 1 Phage-related minor tail protein PAS_7 PF12860.7 gi|88603281|ref|YP_503459.1| - 0.0073 16.5 3.6 25 5.1 0.0 6.0 7 0 0 7 7 5 0 PAS fold TMF_TATA_bd PF12325.8 gi|88603281|ref|YP_503459.1| - 0.011 16.0 9.5 0.092 13.0 0.0 3.9 4 0 0 4 4 4 0 TATA element modulatory factor 1 TATA binding Syntaxin_2 PF14523.6 gi|88603281|ref|YP_503459.1| - 0.019 15.3 13.8 7.7 7.0 2.8 6.2 3 1 1 4 4 4 0 Syntaxin-like protein DUF4352 PF11611.8 gi|88603281|ref|YP_503459.1| - 0.041 14.2 4.5 7.9 6.8 0.0 5.9 7 0 0 7 7 7 0 Domain of unknown function (DUF4352) HATPase_c_4 PF13749.6 gi|88603281|ref|YP_503459.1| - 0.072 13.2 0.1 2.1 8.6 0.0 3.0 2 0 0 2 2 2 0 Putative ATP-dependent DNA helicase recG C-terminal Gp-FAR-1 PF05823.12 gi|88603281|ref|YP_503459.1| - 0.19 12.1 2.3 0.35 11.2 0.8 2.3 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) AbiGi PF10899.8 gi|88603281|ref|YP_503459.1| - 0.3 10.9 1.9 4.1 7.2 0.0 2.9 3 0 0 3 3 3 0 Putative abortive phage resistance protein AbiGi, antitoxin DASH_Duo1 PF08651.10 gi|88603281|ref|YP_503459.1| - 0.36 10.6 9.3 0.72 9.7 0.2 5.3 4 1 0 4 4 3 0 DASH complex subunit Duo1 Nas2_N PF18265.1 gi|88603281|ref|YP_503459.1| - 2.1 8.3 6.2 31 4.6 0.1 3.8 4 0 0 4 4 3 0 Nas2 N_terminal domain DUF1664 PF07889.12 gi|88603281|ref|YP_503459.1| - 8.6 6.4 25.9 0.81 9.7 2.3 5.5 3 3 1 4 4 4 0 Protein of unknown function (DUF1664) DDE_Tnp_IS1 PF03400.13 gi|88603282|ref|YP_503460.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88603282|ref|YP_503460.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88603282|ref|YP_503460.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88603283|ref|YP_503461.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88603283|ref|YP_503461.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88603283|ref|YP_503461.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88603283|ref|YP_503461.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain PAS_9 PF13426.7 gi|88603284|ref|YP_503462.1| - 6.1e-12 45.7 0.2 8.8e-06 25.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88603284|ref|YP_503462.1| - 5e-11 42.6 0.0 1e-05 25.5 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88603284|ref|YP_503462.1| - 6.2e-09 35.7 0.1 0.00024 21.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|88603284|ref|YP_503462.1| - 2.9e-08 33.9 0.0 0.006 16.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold BLACT_WH PF17778.1 gi|88603285|ref|YP_503463.1| - 0.029 14.4 0.1 0.05 13.6 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_5 PF01022.20 gi|88603285|ref|YP_503463.1| - 0.035 14.0 0.0 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|88603285|ref|YP_503463.1| - 0.045 13.5 0.0 0.093 12.5 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain PadR PF03551.14 gi|88603285|ref|YP_503463.1| - 0.047 13.7 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|88603285|ref|YP_503463.1| - 0.089 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|88603285|ref|YP_503463.1| - 0.098 12.6 0.0 0.84 9.6 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|88603285|ref|YP_503463.1| - 0.12 12.0 0.0 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|88603285|ref|YP_503463.1| - 0.13 12.8 0.0 0.59 10.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain Response_reg PF00072.24 gi|88603286|ref|YP_503464.1| - 3.8e-20 72.1 0.0 5.7e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain 5-nucleotidase PF06189.12 gi|88603286|ref|YP_503464.1| - 0.057 12.3 0.0 0.14 11.1 0.0 1.6 2 0 0 2 2 2 0 5'-nucleotidase PAS_9 PF13426.7 gi|88603287|ref|YP_503465.1| - 8.8e-17 61.3 2.5 1.2e-13 51.2 0.1 3.0 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|88603287|ref|YP_503465.1| - 7.3e-16 58.4 0.0 7.4e-12 45.5 0.0 2.5 2 1 0 2 2 2 2 PAS fold PAS PF00989.25 gi|88603287|ref|YP_503465.1| - 2.9e-15 56.2 0.0 5.9e-13 48.8 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|88603287|ref|YP_503465.1| - 1.6e-11 44.7 0.1 4.5e-11 43.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|88603287|ref|YP_503465.1| - 1.1e-07 32.4 0.1 0.00024 21.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|88603287|ref|YP_503465.1| - 2.8e-07 30.4 0.0 4.3e-05 23.4 0.0 2.7 2 0 0 2 2 2 1 PAS domain SPOB_a PF14689.6 gi|88603287|ref|YP_503465.1| - 0.0014 18.3 0.0 0.0046 16.6 0.0 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_3 PF08447.12 gi|88603287|ref|YP_503465.1| - 0.11 12.8 0.0 0.25 11.7 0.0 1.7 1 0 0 1 1 1 0 PAS fold RasGEF_N_2 PF14663.6 gi|88603287|ref|YP_503465.1| - 0.18 12.2 0.5 20 5.6 0.1 2.6 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain HTH_24 PF13412.6 gi|88603287|ref|YP_503465.1| - 0.28 10.8 2.7 0.34 10.5 0.4 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TBPIP PF07106.13 gi|88603287|ref|YP_503465.1| - 0.33 10.9 1.8 1 9.3 0.1 2.5 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain Phage_holin_3_6 PF07332.11 gi|88603288|ref|YP_503466.1| - 0.0011 19.0 2.0 0.0022 18.0 2.0 1.6 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Ni_hydr_CYTB PF01292.20 gi|88603288|ref|YP_503466.1| - 0.021 14.4 0.3 0.032 13.8 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF3180 PF11377.8 gi|88603288|ref|YP_503466.1| - 0.027 14.6 0.2 0.34 11.1 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) Peptidase_U4 PF03419.13 gi|88603288|ref|YP_503466.1| - 0.14 11.4 4.9 0.16 11.3 4.9 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4293 PF14126.6 gi|88603288|ref|YP_503466.1| - 0.25 11.6 5.5 0.3 11.3 5.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) Choline_transpo PF04515.12 gi|88603288|ref|YP_503466.1| - 0.34 10.1 12.0 0.63 9.2 2.2 2.0 2 0 0 2 2 2 0 Plasma-membrane choline transporter DUF2768 PF10966.8 gi|88603288|ref|YP_503466.1| - 0.67 10.4 8.0 0.73 10.3 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2768) DUF202 PF02656.15 gi|88603288|ref|YP_503466.1| - 0.87 10.1 8.4 7.9 7.0 8.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2178 PF09946.9 gi|88603288|ref|YP_503466.1| - 2 8.6 9.7 3 8.0 4.4 2.2 1 1 2 3 3 3 0 Predicted membrane protein (DUF2178) SCAMP PF04144.13 gi|88603289|ref|YP_503467.1| - 0.016 15.5 2.9 0.018 15.3 2.9 1.1 1 0 0 1 1 1 0 SCAMP family DUF2975 PF11188.8 gi|88603289|ref|YP_503467.1| - 8.5 6.3 8.4 87 3.0 8.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) MoCF_biosynth PF00994.24 gi|88603291|ref|YP_503469.1| - 3.1e-26 91.8 0.0 5.3e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_N PF03453.17 gi|88603291|ref|YP_503469.1| - 1.6e-23 83.2 0.0 2.3e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|88603291|ref|YP_503469.1| - 0.091 13.0 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 MoeA C-terminal region (domain IV) Peripla_BP_6 PF13458.6 gi|88603292|ref|YP_503470.1| - 1.9e-15 57.4 0.6 2.8e-15 56.8 0.6 1.4 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|88603292|ref|YP_503470.1| - 1.4e-12 47.4 0.0 3.2e-12 46.2 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region zinc_ribbon_2 PF13240.6 gi|88603293|ref|YP_503471.1| - 4.7e-08 32.5 3.3 7.9e-08 31.8 3.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|88603293|ref|YP_503471.1| - 9.1e-06 25.6 1.4 1.3e-05 25.1 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|88603293|ref|YP_503471.1| - 0.00065 19.0 2.3 0.001 18.4 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|88603293|ref|YP_503471.1| - 0.001 18.9 3.5 0.36 10.8 0.2 2.3 2 0 0 2 2 2 2 Nudix N-terminal SUR7 PF06687.12 gi|88603293|ref|YP_503471.1| - 0.0045 16.6 0.2 0.0048 16.5 0.2 1.1 1 0 0 1 1 1 1 SUR7/PalI family zinc_ribbon_15 PF17032.5 gi|88603293|ref|YP_503471.1| - 0.011 16.4 3.5 0.042 14.6 3.6 1.9 2 0 0 2 2 2 0 zinc-ribbon family DUF3671 PF12420.8 gi|88603293|ref|YP_503471.1| - 0.03 14.4 5.2 0.049 13.7 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function NOB1_Zn_bind PF08772.11 gi|88603293|ref|YP_503471.1| - 0.11 12.6 3.8 0.25 11.5 3.9 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DHHC PF01529.20 gi|88603293|ref|YP_503471.1| - 0.2 11.7 11.7 2.5 8.2 4.3 2.4 1 1 2 3 3 3 0 DHHC palmitoyltransferase CDC24_OB3 PF17244.2 gi|88603293|ref|YP_503471.1| - 0.2 11.3 0.3 0.52 10.0 0.3 1.6 1 1 1 2 2 2 0 Cell division control protein 24, OB domain 3 zf-RRN7 PF11781.8 gi|88603293|ref|YP_503471.1| - 0.23 11.2 4.1 0.58 9.9 4.1 1.7 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF872 PF05915.12 gi|88603293|ref|YP_503471.1| - 0.28 11.4 3.0 0.12 12.6 0.7 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) UPF0547 PF10571.9 gi|88603293|ref|YP_503471.1| - 0.37 10.9 4.1 0.61 10.2 4.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|88603293|ref|YP_503471.1| - 0.83 9.3 2.6 18 5.0 0.2 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF4234 PF14018.6 gi|88603293|ref|YP_503471.1| - 1.1 9.4 5.0 0.43 10.7 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) UPF0220 PF05255.11 gi|88603293|ref|YP_503471.1| - 4.1 6.9 9.0 2.3 7.8 3.6 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0220) TPR_2 PF07719.17 gi|88603294|ref|YP_503472.1| - 3.6e-16 57.9 2.5 7.8e-08 31.9 0.0 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603294|ref|YP_503472.1| - 3.4e-15 55.1 0.5 1.3e-08 34.3 0.1 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603294|ref|YP_503472.1| - 3.4e-14 52.2 2.3 2.9e-07 30.1 1.0 2.6 2 1 1 3 3 3 2 TPR repeat TPR_8 PF13181.6 gi|88603294|ref|YP_503472.1| - 2e-13 49.4 1.6 0.00063 19.8 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603294|ref|YP_503472.1| - 6.2e-11 42.8 0.0 2e-06 28.3 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603294|ref|YP_503472.1| - 1.5e-09 37.5 0.2 0.00078 19.7 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603294|ref|YP_503472.1| - 8.3e-08 32.4 0.0 0.0017 19.0 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603294|ref|YP_503472.1| - 5.8e-07 29.7 1.0 0.0008 19.9 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603294|ref|YP_503472.1| - 5.8e-07 29.9 0.0 0.016 15.7 0.1 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603294|ref|YP_503472.1| - 2.6e-06 27.6 1.6 0.0095 16.2 0.7 2.9 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603294|ref|YP_503472.1| - 2.8e-05 24.2 0.0 0.033 14.3 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603294|ref|YP_503472.1| - 0.0049 17.1 0.3 0.014 15.6 0.1 1.8 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|88603294|ref|YP_503472.1| - 0.01 15.9 0.1 0.55 10.3 0.1 2.8 1 1 1 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.6 gi|88603294|ref|YP_503472.1| - 0.1 12.7 0.0 28 5.0 0.0 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat Mitofilin PF09731.9 gi|88603296|ref|YP_503474.1| - 0.061 12.2 32.7 0.097 11.5 32.7 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DZR PF12773.7 gi|88603297|ref|YP_503475.1| - 2.8e-25 88.1 23.9 5e-12 45.7 7.4 3.2 2 1 0 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|88603297|ref|YP_503475.1| - 2.7e-23 80.9 39.9 6.4e-08 32.1 5.0 4.3 4 0 0 4 4 4 4 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|88603297|ref|YP_503475.1| - 3.7e-23 80.1 37.4 2.5e-08 33.0 3.3 4.4 4 0 0 4 4 4 4 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|88603297|ref|YP_503475.1| - 5e-12 46.4 20.2 0.0082 16.9 0.6 4.2 4 0 0 4 4 4 4 zinc-ribbon family UPF0547 PF10571.9 gi|88603297|ref|YP_503475.1| - 8.1e-06 25.8 39.2 0.0012 18.9 3.1 4.7 4 0 0 4 4 4 3 Uncharacterised protein family UPF0547 DHHC PF01529.20 gi|88603297|ref|YP_503475.1| - 6.6e-05 23.0 19.9 0.098 12.8 0.3 4.1 4 0 0 4 4 4 4 DHHC palmitoyltransferase Nudix_N_2 PF14803.6 gi|88603297|ref|YP_503475.1| - 0.00015 21.6 39.7 0.2 11.6 0.4 7.9 8 0 0 8 8 8 4 Nudix N-terminal zinc-ribbon_6 PF10005.9 gi|88603297|ref|YP_503475.1| - 0.0082 16.8 16.1 5.6 7.7 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|88603297|ref|YP_503475.1| - 0.18 12.0 35.7 0.081 13.1 2.8 6.5 3 3 4 7 7 7 0 Zinc ribbon domain DUF5304 PF17230.2 gi|88603297|ref|YP_503475.1| - 0.26 11.5 2.2 0.33 11.2 0.7 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF5304) zf-dskA_traR PF01258.17 gi|88603297|ref|YP_503475.1| - 0.33 10.9 32.2 1.4 8.9 0.6 7.0 4 2 2 6 6 6 0 Prokaryotic dksA/traR C4-type zinc finger NOB1_Zn_bind PF08772.11 gi|88603297|ref|YP_503475.1| - 0.7 10.1 31.3 2.7 8.2 1.1 5.2 4 2 0 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like zf-B_box PF00643.24 gi|88603297|ref|YP_503475.1| - 1.1 9.5 24.8 4.6 7.5 0.7 4.6 4 1 0 4 4 4 0 B-box zinc finger Prok-RING_1 PF14446.6 gi|88603297|ref|YP_503475.1| - 2.2 8.2 31.2 0.53 10.3 1.8 4.6 4 1 0 4 4 4 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|88603297|ref|YP_503475.1| - 2.3 8.3 0.0 2.3 8.3 0.0 4.4 6 0 0 6 6 5 0 PhnA Zinc-Ribbon CDC24_OB3 PF17244.2 gi|88603297|ref|YP_503475.1| - 7.7 6.2 14.9 3.9 7.1 0.1 3.9 2 1 2 4 4 4 0 Cell division control protein 24, OB domain 3 zinc_ribbon_2 PF13240.6 gi|88603298|ref|YP_503476.1| - 6.5e-07 28.9 4.2 1e-06 28.2 4.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|88603298|ref|YP_503476.1| - 7.7e-07 29.0 0.6 1.2e-06 28.4 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|88603298|ref|YP_503476.1| - 0.00012 21.3 4.6 0.00019 20.7 4.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF308 PF03729.13 gi|88603298|ref|YP_503476.1| - 0.0099 16.2 8.5 0.02 15.2 8.5 1.6 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) UPF0547 PF10571.9 gi|88603298|ref|YP_503476.1| - 0.024 14.7 4.1 0.043 13.9 4.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_9 PF14369.6 gi|88603298|ref|YP_503476.1| - 0.033 14.5 2.4 2.4 8.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon zf_UBZ PF18439.1 gi|88603298|ref|YP_503476.1| - 0.038 13.6 3.5 0.2 11.3 0.3 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|88603298|ref|YP_503476.1| - 0.044 14.5 2.0 0.073 13.8 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|88603298|ref|YP_503476.1| - 0.067 13.1 3.0 0.86 9.6 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|88603298|ref|YP_503476.1| - 0.074 13.0 1.7 5.8 7.0 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein DUF1700 PF08006.11 gi|88603298|ref|YP_503476.1| - 0.085 12.4 0.8 0.13 11.8 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) zf_C2H2_13 PF18508.1 gi|88603298|ref|YP_503476.1| - 0.11 12.0 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 Zinc finger domain DUF2288 PF10052.9 gi|88603298|ref|YP_503476.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2288) zinc-ribbons_6 PF07191.12 gi|88603298|ref|YP_503476.1| - 0.14 12.2 1.0 0.33 10.9 0.6 1.8 2 0 0 2 2 2 0 zinc-ribbons zf-Mss51 PF13824.6 gi|88603298|ref|YP_503476.1| - 0.19 11.8 2.7 0.38 10.9 2.7 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|88603298|ref|YP_503476.1| - 2.4 8.3 5.9 12 6.1 1.0 2.3 1 1 2 3 3 3 0 Zinc ribbon domain DHHC PF01529.20 gi|88603298|ref|YP_503476.1| - 7 6.8 7.4 0.84 9.7 0.3 2.5 1 1 1 2 2 2 0 DHHC palmitoyltransferase HisG PF01634.18 gi|88603299|ref|YP_503477.1| - 4e-41 140.6 0.0 5.3e-41 140.2 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|88603299|ref|YP_503477.1| - 2.7e-22 78.7 2.6 5.7e-22 77.7 0.2 2.5 3 0 0 3 3 3 1 HisG, C-terminal domain PRA-CH PF01502.18 gi|88603300|ref|YP_503478.1| - 3.3e-34 116.5 0.5 4.6e-34 116.1 0.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF1347 PF07079.11 gi|88603300|ref|YP_503478.1| - 0.1 11.1 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1347) DUF2614 PF11023.8 gi|88603301|ref|YP_503479.1| - 0.82 9.8 11.4 0.35 11.0 2.5 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain Peptidase_S8 PF00082.22 gi|88603302|ref|YP_503480.1| - 2.7e-43 148.3 0.6 1.1e-28 100.4 0.2 2.2 2 0 0 2 2 2 2 Subtilase family SBP_bac_3 PF00497.20 gi|88603303|ref|YP_503481.1| - 5.6e-48 163.3 0.0 6.4e-48 163.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|88603303|ref|YP_503481.1| - 1.8e-06 28.1 0.0 4.5e-05 23.6 0.0 2.4 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site AAA_35 PF14516.6 gi|88603306|ref|YP_503484.1| - 6.7e-07 28.5 0.0 1.7e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain PDDEXK_9 PF08011.11 gi|88603306|ref|YP_503484.1| - 0.00017 21.4 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_22 PF13401.6 gi|88603306|ref|YP_503484.1| - 0.00048 20.4 0.0 0.0017 18.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88603306|ref|YP_503484.1| - 0.017 15.5 0.1 0.31 11.4 0.0 2.6 2 2 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 gi|88603306|ref|YP_503484.1| - 0.046 13.8 0.0 0.13 12.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA-ATPase_like PF09820.9 gi|88603306|ref|YP_503484.1| - 0.11 11.9 0.0 0.42 10.0 0.0 1.9 1 1 0 1 1 1 0 Predicted AAA-ATPase AAA_35 PF14516.6 gi|88603307|ref|YP_503485.1| - 3.3e-10 39.3 0.0 1.1e-09 37.6 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 gi|88603307|ref|YP_503485.1| - 1.7e-05 25.1 0.1 4.6e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain PDDEXK_9 PF08011.11 gi|88603307|ref|YP_503485.1| - 0.00014 21.7 0.0 0.00062 19.6 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_14 PF13173.6 gi|88603307|ref|YP_503485.1| - 0.00086 19.3 0.1 0.024 14.7 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88603307|ref|YP_503485.1| - 0.00098 19.5 0.5 0.014 15.7 0.0 2.7 2 2 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|88603307|ref|YP_503485.1| - 0.001 19.1 0.1 0.0032 17.4 0.0 1.8 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA-ATPase_like PF09820.9 gi|88603307|ref|YP_503485.1| - 0.0013 18.2 0.0 0.017 14.6 0.0 2.3 1 1 0 1 1 1 1 Predicted AAA-ATPase AAA PF00004.29 gi|88603307|ref|YP_503485.1| - 0.022 15.2 0.0 0.13 12.7 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|88603307|ref|YP_503485.1| - 0.037 13.3 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain HTH_17 PF12728.7 gi|88603308|ref|YP_503486.1| - 7e-11 42.1 0.0 1.2e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|88603308|ref|YP_503486.1| - 0.026 14.6 0.4 0.054 13.6 0.1 1.7 2 0 0 2 2 2 0 MerR HTH family regulatory protein AbiEi_4 PF13338.6 gi|88603308|ref|YP_503486.1| - 0.036 14.2 0.0 0.086 13.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TPR_19 PF14559.6 gi|88603309|ref|YP_503487.1| - 1.8e-35 121.2 21.5 3.1e-05 24.4 0.6 13.6 9 4 4 14 14 14 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603309|ref|YP_503487.1| - 1.4e-26 92.8 16.1 0.00016 22.2 0.0 11.3 11 0 0 11 11 11 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603309|ref|YP_503487.1| - 3.4e-26 89.2 20.8 0.0021 18.0 0.3 14.2 17 0 0 17 17 13 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603309|ref|YP_503487.1| - 1.2e-24 86.3 8.7 0.00025 21.2 0.2 10.1 8 4 3 11 11 11 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 gi|88603309|ref|YP_503487.1| - 1.7e-22 78.2 5.0 0.0021 17.8 0.0 10.1 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603309|ref|YP_503487.1| - 1.4e-21 74.8 3.1 0.011 15.8 0.0 11.4 13 0 0 13 13 12 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603309|ref|YP_503487.1| - 3.9e-21 73.9 27.3 0.012 16.4 0.0 14.6 9 5 8 17 17 15 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603309|ref|YP_503487.1| - 3.2e-11 42.8 14.6 0.11 12.9 0.0 10.1 13 0 0 13 13 10 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88603309|ref|YP_503487.1| - 3.7e-09 36.8 7.0 0.071 13.4 0.1 6.3 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603309|ref|YP_503487.1| - 4e-09 36.0 4.6 0.055 13.2 0.3 8.0 8 1 0 8 8 8 1 TPR repeat TPR_9 PF13371.6 gi|88603309|ref|YP_503487.1| - 1.6e-08 34.6 32.2 0.00027 21.0 0.6 9.2 9 2 2 11 11 11 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603309|ref|YP_503487.1| - 6.5e-08 32.1 14.1 3.7 7.8 0.0 10.0 11 1 1 12 12 9 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603309|ref|YP_503487.1| - 1.5e-07 31.6 24.9 0.043 14.1 0.0 10.7 10 4 0 11 11 9 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88603309|ref|YP_503487.1| - 2e-06 27.8 6.7 0.3 11.1 0.2 6.5 5 1 0 5 5 5 1 Putative TPR-like repeat TPR_15 PF13429.6 gi|88603309|ref|YP_503487.1| - 5.8e-06 25.7 6.4 2.9 7.0 0.0 6.1 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88603309|ref|YP_503487.1| - 1.7e-05 24.5 19.0 0.48 10.4 0.1 10.0 11 0 0 11 11 10 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88603309|ref|YP_503487.1| - 0.0003 20.3 0.0 0.11 11.9 0.0 3.8 3 1 1 4 4 4 1 Coatomer epsilon subunit TPR_MalT PF17874.1 gi|88603309|ref|YP_503487.1| - 0.00088 18.7 2.5 9.5 5.5 0.0 5.4 4 1 0 4 4 4 0 MalT-like TPR region TPR_6 PF13174.6 gi|88603309|ref|YP_503487.1| - 0.0013 19.2 14.0 0.094 13.4 0.1 8.2 9 0 0 9 9 7 1 Tetratricopeptide repeat BTAD PF03704.17 gi|88603309|ref|YP_503487.1| - 0.0024 18.3 19.4 3.1 8.2 0.1 7.7 7 2 2 9 9 9 2 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|88603309|ref|YP_503487.1| - 0.026 14.2 7.8 0.077 12.7 0.4 4.7 6 0 0 6 6 6 0 Tetratricopeptide repeat-like domain RPN7 PF10602.9 gi|88603309|ref|YP_503487.1| - 0.051 13.3 0.0 3.5 7.3 0.0 3.5 3 0 0 3 3 3 0 26S proteasome subunit RPN7 TPR_4 PF07721.14 gi|88603309|ref|YP_503487.1| - 0.06 14.0 36.3 1.8 9.4 0.0 11.3 13 0 0 13 13 11 0 Tetratricopeptide repeat SPO22 PF08631.10 gi|88603309|ref|YP_503487.1| - 0.21 11.0 1.0 47 3.3 0.0 3.7 4 0 0 4 4 4 0 Meiosis protein SPO22/ZIP4 like DUF3856 PF12968.7 gi|88603309|ref|YP_503487.1| - 0.77 9.8 3.1 1.1e+02 2.8 0.0 5.2 5 0 0 5 5 5 0 Domain of Unknown Function (DUF3856) HrpB1_HrpK PF09613.10 gi|88603309|ref|YP_503487.1| - 1.8 8.2 6.9 38 3.9 0.1 5.8 6 2 1 8 8 7 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF4011 PF13195.6 gi|88603310|ref|YP_503488.1| - 3.1e-38 131.3 0.0 7.3e-38 130.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF4011) MTES_1575 PF18741.1 gi|88603310|ref|YP_503488.1| - 1.9e-27 95.3 0.0 4.4e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 REase_MTES_1575 AAA_12 PF13087.6 gi|88603310|ref|YP_503488.1| - 2.1e-18 66.7 0.0 1.4e-17 64.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|88603310|ref|YP_503488.1| - 2.2e-14 53.9 0.2 8e-06 25.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF3320 PF11784.8 gi|88603310|ref|YP_503488.1| - 2.1e-11 43.6 0.2 1.6e-10 40.8 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) AAA_30 PF13604.6 gi|88603310|ref|YP_503488.1| - 2.8e-08 33.7 0.0 0.00026 20.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|88603310|ref|YP_503488.1| - 2.5e-07 31.1 0.0 0.0001 22.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|88603310|ref|YP_503488.1| - 0.00022 21.1 0.0 1.4 8.6 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|88603310|ref|YP_503488.1| - 0.0037 17.7 0.0 0.014 15.8 0.0 2.0 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|88603310|ref|YP_503488.1| - 0.021 15.3 0.0 0.38 11.2 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|88603310|ref|YP_503488.1| - 0.034 13.4 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.9 gi|88603310|ref|YP_503488.1| - 0.034 13.3 0.1 0.068 12.3 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 IstB_IS21 PF01695.17 gi|88603310|ref|YP_503488.1| - 0.053 13.2 0.3 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|88603310|ref|YP_503488.1| - 0.063 12.8 0.1 0.64 9.6 0.1 2.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|88603310|ref|YP_503488.1| - 0.17 11.3 0.0 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Cas_APE2256 PF09651.10 gi|88603311|ref|YP_503489.1| - 0.0012 18.7 0.1 0.0026 17.7 0.1 1.5 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) SmpA_OmlA PF04355.13 gi|88603311|ref|YP_503489.1| - 0.052 13.4 0.6 1.4 8.8 0.3 2.3 2 0 0 2 2 2 0 SmpA / OmlA family HTH_34 PF13601.6 gi|88603311|ref|YP_503489.1| - 0.083 13.1 0.8 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain PI-TkoII_IV PF18714.1 gi|88603311|ref|YP_503489.1| - 0.22 11.0 4.1 0.63 9.5 1.3 2.9 3 1 0 3 3 3 0 DNA polymerase II intein Domain IV PEP-utilisers_N PF05524.13 gi|88603312|ref|YP_503490.1| - 1.2e-07 31.9 0.7 1.4 9.1 0.0 4.8 1 1 4 5 5 5 1 PEP-utilising enzyme, N-terminal Qua1 PF16274.5 gi|88603312|ref|YP_503490.1| - 6.5e-07 29.1 0.1 11 5.9 0.0 6.3 2 2 5 7 7 6 0 Qua1 domain Val_tRNA-synt_C PF10458.9 gi|88603312|ref|YP_503490.1| - 2.3e-06 27.8 3.9 2.4 8.5 0.0 5.1 5 1 1 6 6 5 1 Valyl tRNA synthetase tRNA binding arm Tropomyosin PF00261.20 gi|88603312|ref|YP_503490.1| - 1.6e-05 24.4 2.1 0.44 9.9 0.2 2.9 1 1 2 3 3 3 2 Tropomyosin DUF1664 PF07889.12 gi|88603312|ref|YP_503490.1| - 3.6e-05 23.8 4.3 0.007 16.4 0.5 2.4 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) Dynein_C PF18199.1 gi|88603312|ref|YP_503490.1| - 6.9e-05 22.2 1.2 0.43 9.8 0.1 3.7 1 1 2 3 3 3 1 Dynein heavy chain C-terminal domain Sec34 PF04136.15 gi|88603312|ref|YP_503490.1| - 0.00012 22.0 4.0 0.44 10.4 0.1 2.9 1 1 2 3 3 3 2 Sec34-like family DUF16 PF01519.16 gi|88603312|ref|YP_503490.1| - 0.0003 21.2 5.6 0.074 13.6 1.7 2.5 1 1 1 2 2 2 2 Protein of unknown function DUF16 AAA_13 PF13166.6 gi|88603312|ref|YP_503490.1| - 0.00035 19.4 1.8 0.00045 19.0 1.8 1.2 1 0 0 1 1 1 1 AAA domain Golgin_A5 PF09787.9 gi|88603312|ref|YP_503490.1| - 0.00076 19.0 0.9 0.0033 17.0 0.3 1.8 1 1 1 2 2 2 1 Golgin subfamily A member 5 BCAS2 PF05700.11 gi|88603312|ref|YP_503490.1| - 0.00079 19.2 2.8 0.08 12.6 0.9 2.8 1 1 2 3 3 3 2 Breast carcinoma amplified sequence 2 (BCAS2) Lipoprotein_20 PF13942.6 gi|88603312|ref|YP_503490.1| - 0.0011 19.0 8.4 0.13 12.2 1.2 3.3 1 1 2 3 3 3 1 YfhG lipoprotein NES_C_h PF18208.1 gi|88603312|ref|YP_503490.1| - 0.0018 18.5 7.3 2.6 8.3 0.2 4.1 1 1 4 5 5 5 1 Nicking enzyme C-terminal middle helical domain EzrA PF06160.12 gi|88603312|ref|YP_503490.1| - 0.0019 16.5 5.9 0.023 12.9 3.9 2.2 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA DASH_Dad4 PF08650.10 gi|88603312|ref|YP_503490.1| - 0.0035 17.3 6.3 13 5.9 0.1 4.9 2 1 3 5 5 5 0 DASH complex subunit Dad4 Telomere_Sde2_2 PF13297.6 gi|88603312|ref|YP_503490.1| - 0.0039 16.8 3.9 39 4.0 0.0 5.1 5 1 1 6 6 6 0 Telomere stability C-terminal COG5 PF10392.9 gi|88603312|ref|YP_503490.1| - 0.0039 17.4 8.3 2.6 8.3 0.1 4.1 1 1 3 4 4 4 1 Golgi transport complex subunit 5 DASH_Duo1 PF08651.10 gi|88603312|ref|YP_503490.1| - 0.0043 16.8 3.5 8.4 6.3 0.2 4.1 2 1 2 4 4 4 0 DASH complex subunit Duo1 Spc7 PF08317.11 gi|88603312|ref|YP_503490.1| - 0.0086 15.0 2.9 0.06 12.2 0.6 2.0 1 1 1 2 2 2 1 Spc7 kinetochore protein APG6_N PF17675.1 gi|88603312|ref|YP_503490.1| - 0.012 16.1 2.6 0.11 13.1 2.8 2.1 1 1 0 1 1 1 0 Apg6 coiled-coil region FPP PF05911.11 gi|88603312|ref|YP_503490.1| - 0.013 13.7 0.8 0.024 12.9 0.9 1.3 1 1 0 1 1 1 0 Filament-like plant protein, long coiled-coil Laminin_II PF06009.12 gi|88603312|ref|YP_503490.1| - 0.022 14.7 5.3 0.093 12.8 1.5 2.6 1 1 2 3 3 3 0 Laminin Domain II TrbI_Ftype PF09677.10 gi|88603312|ref|YP_503490.1| - 0.024 15.0 0.1 55 4.1 0.0 4.0 1 1 4 5 5 5 0 Type-F conjugative transfer system protein (TrbI_Ftype) MscS_porin PF12795.7 gi|88603312|ref|YP_503490.1| - 0.039 13.5 1.7 0.18 11.3 1.7 1.9 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain Gag_p17 PF00540.18 gi|88603312|ref|YP_503490.1| - 0.042 13.8 0.0 16 5.5 0.0 3.6 1 1 1 3 3 3 0 gag gene protein p17 (matrix protein) DUF5392 PF17370.2 gi|88603312|ref|YP_503490.1| - 0.043 13.9 0.3 1.7e+02 2.3 0.0 4.3 4 1 1 5 5 5 0 Family of unknown function (DUF5392) FadA PF09403.10 gi|88603312|ref|YP_503490.1| - 0.043 14.3 0.9 19 5.8 0.1 3.4 1 1 1 2 2 2 0 Adhesion protein FadA HTH_30 PF13556.6 gi|88603312|ref|YP_503490.1| - 0.044 13.6 2.8 6.7 6.6 0.1 3.7 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain YkyA PF10368.9 gi|88603312|ref|YP_503490.1| - 0.047 13.4 7.8 15 5.2 0.1 3.9 1 1 2 4 4 4 0 Putative cell-wall binding lipoprotein TFR_dimer PF04253.15 gi|88603312|ref|YP_503490.1| - 0.05 13.7 1.5 10 6.2 0.0 2.7 1 1 0 2 2 2 0 Transferrin receptor-like dimerisation domain DUF1612 PF07756.12 gi|88603312|ref|YP_503490.1| - 0.052 13.8 0.0 12 6.1 0.0 3.1 1 1 2 4 4 4 0 Protein of unknown function (DUF1612) ADIP PF11559.8 gi|88603312|ref|YP_503490.1| - 0.066 13.3 3.1 3.5 7.7 0.4 3.0 2 1 2 4 4 4 0 Afadin- and alpha -actinin-Binding GvpK PF05121.12 gi|88603312|ref|YP_503490.1| - 0.07 13.2 7.2 4.5 7.4 0.9 3.6 1 1 3 4 4 4 0 Gas vesicle protein K Tropomyosin_1 PF12718.7 gi|88603312|ref|YP_503490.1| - 0.094 12.9 6.0 1.2 9.3 5.3 2.5 1 1 1 2 2 2 0 Tropomyosin like MobC PF05713.11 gi|88603312|ref|YP_503490.1| - 0.1 13.1 4.5 16 6.1 0.1 3.8 3 1 2 5 5 3 0 Bacterial mobilisation protein (MobC) CHASE3 PF05227.13 gi|88603312|ref|YP_503490.1| - 0.14 12.1 1.2 0.76 9.7 0.7 2.2 1 1 1 2 2 2 0 CHASE3 domain DUF1951 PF09188.10 gi|88603312|ref|YP_503490.1| - 0.15 12.1 3.1 0.92 9.5 0.4 2.7 1 1 3 4 4 4 0 Domain of unknown function (DUF1951) DLP_helical PF18709.1 gi|88603312|ref|YP_503490.1| - 0.22 10.7 2.1 8.1 5.5 0.2 2.3 1 1 1 2 2 2 0 Dynamin-like helical domain DHquinase_I PF01487.15 gi|88603312|ref|YP_503490.1| - 0.28 11.4 3.8 7.7 6.7 3.4 2.9 1 1 0 1 1 1 0 Type I 3-dehydroquinase CLZ PF16526.5 gi|88603312|ref|YP_503490.1| - 0.32 11.4 9.7 15 6.0 0.1 4.1 1 1 2 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Corona_S2 PF01601.16 gi|88603312|ref|YP_503490.1| - 1.3 7.4 11.4 1.2 7.5 0.9 3.1 1 1 2 3 3 3 0 Coronavirus S2 glycoprotein MutS_IV PF05190.18 gi|88603312|ref|YP_503490.1| - 3.1 8.2 6.7 94 3.5 0.1 4.0 4 1 0 4 4 4 0 MutS family domain IV SH3BP5 PF05276.14 gi|88603312|ref|YP_503490.1| - 4.2 7.1 14.1 28 4.4 0.2 4.5 1 1 4 5 5 5 0 SH3 domain-binding protein 5 (SH3BP5) GvpG PF05120.12 gi|88603312|ref|YP_503490.1| - 6.3 6.9 6.5 5.5 7.1 0.6 2.9 1 1 2 3 3 3 0 Gas vesicle protein G TPR_1 PF00515.28 gi|88603313|ref|YP_503491.1| - 3.5e-08 32.9 0.0 0.00027 20.6 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603313|ref|YP_503491.1| - 4.7e-08 32.6 0.0 8.2e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 TPR repeat TPR_8 PF13181.6 gi|88603313|ref|YP_503491.1| - 7.8e-08 31.9 0.0 0.0098 16.0 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603313|ref|YP_503491.1| - 6.7e-06 25.8 0.0 0.0034 17.4 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603313|ref|YP_503491.1| - 1.7e-05 24.9 0.1 0.00034 20.8 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603313|ref|YP_503491.1| - 0.00096 19.4 0.1 0.0046 17.2 0.1 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88603313|ref|YP_503491.1| - 0.0015 18.3 0.5 0.54 10.2 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603313|ref|YP_503491.1| - 0.0039 17.9 0.0 0.27 12.2 0.0 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603313|ref|YP_503491.1| - 0.03 15.0 0.0 0.041 14.5 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603313|ref|YP_503491.1| - 0.03 14.5 0.2 0.49 10.6 0.0 2.4 1 1 0 2 2 2 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|88603313|ref|YP_503491.1| - 0.032 13.7 0.1 0.049 13.1 0.1 1.3 1 0 0 1 1 1 0 SHNi-TPR TPR_19 PF14559.6 gi|88603313|ref|YP_503491.1| - 0.038 14.5 0.0 0.065 13.8 0.0 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat Amino_oxidase PF01593.24 gi|88603314|ref|YP_503492.1| - 5.1e-19 68.9 0.0 1.1e-18 67.8 0.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|88603314|ref|YP_503492.1| - 2.2e-14 53.5 0.0 5.6e-14 52.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|88603314|ref|YP_503492.1| - 1.4e-07 31.4 0.0 0.0021 17.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|88603314|ref|YP_503492.1| - 3.8e-05 23.1 0.1 0.0055 16.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|88603314|ref|YP_503492.1| - 0.00051 19.2 0.1 0.0033 16.6 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|88603314|ref|YP_503492.1| - 0.0015 17.9 0.1 0.0028 17.0 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|88603314|ref|YP_503492.1| - 0.009 15.1 0.1 0.3 10.1 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|88603314|ref|YP_503492.1| - 0.0091 15.3 0.1 0.085 12.1 0.1 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|88603314|ref|YP_503492.1| - 0.013 14.8 0.2 0.036 13.3 0.1 1.7 2 0 0 2 2 2 0 FAD binding domain MCRA PF06100.11 gi|88603314|ref|YP_503492.1| - 0.013 14.3 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 MCRA family Pyr_redox_3 PF13738.6 gi|88603314|ref|YP_503492.1| - 0.022 14.0 0.1 0.038 13.3 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|88603314|ref|YP_503492.1| - 0.027 13.2 0.1 0.72 8.5 0.2 2.1 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|88603314|ref|YP_503492.1| - 0.21 10.8 0.1 0.21 10.8 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|88603314|ref|YP_503492.1| - 0.3 11.7 3.5 3.4 8.3 0.1 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_5 PF12801.7 gi|88603315|ref|YP_503493.1| - 8.2e-15 54.5 2.4 8.2e-15 54.5 2.4 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603315|ref|YP_503493.1| - 1.1e-09 38.3 22.4 5e-07 29.8 13.0 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603315|ref|YP_503493.1| - 2.2e-09 37.8 8.6 0.00026 21.5 0.8 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603315|ref|YP_503493.1| - 3.6e-09 36.1 19.2 1.4e-05 24.7 4.7 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603315|ref|YP_503493.1| - 3.2e-06 27.2 10.3 3.2e-06 27.2 10.3 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603315|ref|YP_503493.1| - 4e-06 26.8 10.5 4e-06 26.8 10.5 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88603315|ref|YP_503493.1| - 2.7e-05 24.3 12.7 8e-05 22.8 9.6 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603315|ref|YP_503493.1| - 0.00022 22.1 13.0 0.0028 18.5 1.0 3.5 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88603315|ref|YP_503493.1| - 0.00033 21.1 14.2 0.094 13.3 1.2 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603315|ref|YP_503493.1| - 0.00063 19.7 20.7 0.013 15.6 4.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88603315|ref|YP_503493.1| - 0.0011 19.3 22.1 0.0058 17.0 1.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603315|ref|YP_503493.1| - 0.0027 18.1 15.6 0.098 13.1 12.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88603315|ref|YP_503493.1| - 0.0073 17.1 10.9 0.12 13.2 0.7 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603315|ref|YP_503493.1| - 0.0082 17.0 3.1 0.0082 17.0 3.1 3.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88603315|ref|YP_503493.1| - 0.011 15.7 2.4 0.011 15.7 2.4 3.0 4 0 0 4 4 3 0 4Fe-4S binding domain DUF4808 PF16066.5 gi|88603315|ref|YP_503493.1| - 0.036 14.6 0.2 7.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4808) Fer4_15 PF13459.6 gi|88603315|ref|YP_503493.1| - 0.15 12.8 8.9 0.79 10.5 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain SPT_ssu-like PF11779.8 gi|88603315|ref|YP_503493.1| - 0.25 11.0 0.2 0.25 11.0 0.2 3.3 4 0 0 4 4 4 0 Small subunit of serine palmitoyltransferase-like Fer4_13 PF13370.6 gi|88603315|ref|YP_503493.1| - 6.6 7.4 17.9 2 9.0 4.1 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I DUF2633 PF11119.8 gi|88603315|ref|YP_503493.1| - 8.5 6.4 6.6 8.6 6.4 0.5 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2633) Inhibitor_I42 PF09394.10 gi|88603316|ref|YP_503494.1| - 1.8e-25 89.1 0.3 2.9e-25 88.5 0.3 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MCPsignal PF00015.21 gi|88603317|ref|YP_503495.1| - 4.4e-44 150.3 51.0 5.7e-44 150.0 24.9 4.8 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.7 gi|88603317|ref|YP_503495.1| - 9.3e-16 58.0 0.0 2.4e-06 27.7 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|88603317|ref|YP_503495.1| - 1.2e-14 54.5 0.0 3.2e-08 33.8 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|88603317|ref|YP_503495.1| - 6.9e-11 42.1 0.0 6.8e-05 22.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|88603317|ref|YP_503495.1| - 1.1e-10 41.3 0.0 3.8e-05 23.6 0.0 3.0 3 0 0 3 3 3 2 PAS domain DUF948 PF06103.11 gi|88603317|ref|YP_503495.1| - 2.4e-06 27.7 29.4 0.031 14.5 1.4 5.9 3 2 2 5 5 5 4 Bacterial protein of unknown function (DUF948) HBM PF16591.5 gi|88603317|ref|YP_503495.1| - 0.011 15.2 1.7 0.011 15.2 1.7 3.6 3 1 1 4 4 4 0 Helical bimodular sensor domain Syntaxin_2 PF14523.6 gi|88603317|ref|YP_503495.1| - 0.016 15.6 14.5 0.65 10.4 0.3 4.9 2 1 2 5 5 5 0 Syntaxin-like protein DUF1664 PF07889.12 gi|88603317|ref|YP_503495.1| - 0.065 13.3 28.5 0.046 13.8 2.7 5.1 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|88603317|ref|YP_503495.1| - 0.066 13.4 18.2 1.7 8.8 0.6 5.1 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family PAS_10 PF13596.6 gi|88603317|ref|YP_503495.1| - 0.078 13.6 0.7 56 4.4 0.0 4.5 4 1 2 6 6 5 0 PAS domain HisKA PF00512.25 gi|88603317|ref|YP_503495.1| - 0.092 12.8 3.5 31 4.7 0.1 4.9 4 3 0 4 4 4 0 His Kinase A (phospho-acceptor) domain Laminin_I PF06008.14 gi|88603317|ref|YP_503495.1| - 0.42 10.3 31.5 0.21 11.3 2.9 4.5 3 2 1 4 4 4 0 Laminin Domain I ArAE_1_C PF11728.8 gi|88603317|ref|YP_503495.1| - 0.43 10.6 4.8 0.95 9.4 0.8 2.9 2 1 0 2 2 2 0 Putative aromatic acid exporter C-terminal domain Gp-FAR-1 PF05823.12 gi|88603317|ref|YP_503495.1| - 0.45 10.9 9.7 1.4 9.3 1.3 4.4 4 1 0 4 4 4 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) WXG100 PF06013.12 gi|88603317|ref|YP_503495.1| - 0.6 10.4 24.7 6.7 7.0 1.0 6.4 5 3 1 6 6 6 0 Proteins of 100 residues with WXG IFT57 PF10498.9 gi|88603317|ref|YP_503495.1| - 0.66 8.9 16.6 4.5 6.1 1.7 3.3 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Jnk-SapK_ap_N PF09744.9 gi|88603317|ref|YP_503495.1| - 0.93 9.7 12.5 2.9 8.1 1.9 3.3 3 1 0 3 3 3 0 JNK_SAPK-associated protein-1 BORCS7 PF16088.5 gi|88603317|ref|YP_503495.1| - 1.3 9.3 13.0 4.7 7.5 1.0 3.5 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 7 DASH_Dad1 PF08649.10 gi|88603317|ref|YP_503495.1| - 8.8 6.6 17.3 3 8.1 0.4 6.5 8 0 0 8 8 8 0 DASH complex subunit Dad1 DUF4200 PF13863.6 gi|88603317|ref|YP_503495.1| - 9.5 6.7 17.0 6 7.3 0.0 4.5 3 2 1 4 4 4 0 Domain of unknown function (DUF4200) TrkA_N PF02254.18 gi|88603320|ref|YP_503498.1| - 3.4e-22 78.9 0.0 3.9e-12 46.5 0.0 3.0 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|88603320|ref|YP_503498.1| - 5.5e-12 45.3 0.6 8.2e-08 32.0 0.1 2.8 3 0 0 3 3 3 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|88603320|ref|YP_503498.1| - 4.5e-08 32.9 9.6 1.1e-07 31.7 9.6 1.7 1 0 0 1 1 1 1 Ion channel XdhC_C PF13478.6 gi|88603320|ref|YP_503498.1| - 0.0012 19.3 0.0 0.22 12.0 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain Ion_trans PF00520.31 gi|88603320|ref|YP_503498.1| - 0.0036 16.6 9.1 0.0062 15.8 9.1 1.3 1 0 0 1 1 1 1 Ion transport protein 2-Hacid_dh_C PF02826.19 gi|88603320|ref|YP_503498.1| - 0.035 13.5 0.0 0.063 12.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|88603320|ref|YP_503498.1| - 0.092 12.9 0.0 0.43 10.7 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DHHC PF01529.20 gi|88603320|ref|YP_503498.1| - 1.9 8.6 6.9 3.8 7.6 6.9 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase IRK PF01007.20 gi|88603320|ref|YP_503498.1| - 8.1 6.2 7.8 44 3.9 7.8 2.0 1 1 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain Peptidase_C11 PF03415.14 gi|88603322|ref|YP_503500.1| - 3.3e-45 155.1 0.0 4.7e-45 154.5 0.0 1.4 1 1 0 1 1 1 1 Clostripain family DJ-1_PfpI PF01965.24 gi|88603323|ref|YP_503501.1| - 2.8e-07 30.5 0.0 4.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_S51 PF03575.17 gi|88603323|ref|YP_503501.1| - 0.039 13.6 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Peptidase_C11 PF03415.14 gi|88603324|ref|YP_503502.1| - 8.8e-42 143.8 0.0 1.2e-41 143.4 0.0 1.1 1 0 0 1 1 1 1 Clostripain family TPR_2 PF07719.17 gi|88603325|ref|YP_503503.1| - 2.4e-29 99.0 0.1 1.2e-05 25.0 0.2 7.0 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603325|ref|YP_503503.1| - 2.8e-24 85.4 0.1 2.9e-06 27.7 0.0 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603325|ref|YP_503503.1| - 1.9e-22 78.1 0.0 0.0001 22.0 0.0 6.1 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603325|ref|YP_503503.1| - 1.3e-20 72.3 6.5 0.0022 18.6 0.1 6.4 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603325|ref|YP_503503.1| - 2.5e-20 71.9 0.6 1.8e-06 27.5 1.0 5.2 3 1 2 5 5 5 3 TPR repeat TPR_16 PF13432.6 gi|88603325|ref|YP_503503.1| - 4.7e-18 65.5 8.7 1.9e-06 28.4 1.2 4.9 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603325|ref|YP_503503.1| - 1.8e-17 62.0 0.1 0.0026 17.9 0.0 6.9 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603325|ref|YP_503503.1| - 6.7e-16 57.4 0.4 0.0038 17.5 0.2 6.3 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603325|ref|YP_503503.1| - 3.5e-13 49.5 1.5 0.0041 17.2 0.0 4.0 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603325|ref|YP_503503.1| - 7.5e-10 39.0 7.1 0.058 13.7 0.1 5.9 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603325|ref|YP_503503.1| - 8.2e-08 32.4 1.9 9.9 7.0 0.0 6.4 7 0 0 7 7 6 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603325|ref|YP_503503.1| - 1.2e-06 28.1 6.2 0.13 12.4 0.1 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603325|ref|YP_503503.1| - 1.4e-05 24.5 1.9 0.033 13.4 0.0 3.2 1 1 2 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|88603325|ref|YP_503503.1| - 7.5e-05 21.8 0.1 0.16 10.8 0.0 2.9 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|88603325|ref|YP_503503.1| - 0.00021 21.1 8.3 1.1 9.3 0.2 4.7 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88603325|ref|YP_503503.1| - 0.00025 20.8 0.2 0.61 9.8 0.1 2.7 2 1 1 3 3 3 2 Tetratricopeptide repeat-like domain Fis1_TPR_C PF14853.6 gi|88603325|ref|YP_503503.1| - 0.00026 21.0 0.1 3.5 7.8 0.0 3.9 4 0 0 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603325|ref|YP_503503.1| - 0.0004 20.5 0.0 0.037 14.3 0.1 2.9 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.6 gi|88603325|ref|YP_503503.1| - 0.00063 20.0 0.3 0.51 10.7 0.0 3.8 2 1 1 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88603325|ref|YP_503503.1| - 0.0065 17.0 5.3 5.9 7.8 0.3 4.4 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88603325|ref|YP_503503.1| - 0.023 14.8 1.9 0.34 11.0 0.3 3.4 4 1 0 4 4 4 0 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|88603325|ref|YP_503503.1| - 0.033 14.2 0.4 0.42 10.7 0.0 2.6 3 0 0 3 3 2 0 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|88603325|ref|YP_503503.1| - 0.054 12.2 0.2 0.33 9.6 0.2 1.9 1 1 0 1 1 1 0 Protein kinase G tetratricopeptide repeat DUF627 PF04781.12 gi|88603325|ref|YP_503503.1| - 0.08 13.0 0.1 7.5 6.6 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF627) TPR_1 PF00515.28 gi|88603326|ref|YP_503504.1| - 1.7e-08 33.9 6.6 3.4e-05 23.5 0.2 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603326|ref|YP_503504.1| - 6e-07 29.1 10.2 0.0059 16.6 0.1 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603326|ref|YP_503504.1| - 3.7e-05 24.2 1.1 0.38 11.7 0.0 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603326|ref|YP_503504.1| - 0.00028 21.5 8.4 0.015 15.9 0.3 3.0 2 1 0 2 2 2 1 Tetratricopeptide repeat PsbP PF01789.16 gi|88603326|ref|YP_503504.1| - 0.00032 20.8 1.1 0.0017 18.5 0.1 2.5 2 1 0 2 2 2 1 PsbP TPR_11 PF13414.6 gi|88603326|ref|YP_503504.1| - 0.00041 20.0 4.7 0.00088 18.9 0.3 2.7 2 0 0 2 2 2 1 TPR repeat TPR_19 PF14559.6 gi|88603326|ref|YP_503504.1| - 0.007 16.9 11.4 0.028 14.9 0.1 3.3 2 1 1 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603326|ref|YP_503504.1| - 0.0076 16.5 4.3 1.5 9.1 0.4 3.6 3 1 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|88603326|ref|YP_503504.1| - 0.019 15.2 4.4 4.3 7.7 0.8 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat DcrB PF08786.11 gi|88603326|ref|YP_503504.1| - 0.047 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 DcrB TPR_8 PF13181.6 gi|88603326|ref|YP_503504.1| - 0.055 13.7 12.3 0.069 13.4 0.2 3.8 4 1 0 4 4 4 0 Tetratricopeptide repeat MetRS-N PF09635.10 gi|88603326|ref|YP_503504.1| - 0.12 12.9 0.8 0.25 11.9 0.8 1.4 1 0 0 1 1 1 0 MetRS-N binding domain MLD PF11647.8 gi|88603326|ref|YP_503504.1| - 0.14 12.5 0.5 0.29 11.5 0.1 1.8 2 0 0 2 2 2 0 Membrane Localization Domain TPR_17 PF13431.6 gi|88603326|ref|YP_503504.1| - 0.35 11.4 0.0 0.35 11.4 0.0 4.2 5 0 0 5 5 5 0 Tetratricopeptide repeat SbcD_C PF12320.8 gi|88603327|ref|YP_503505.1| - 5.8e-20 71.4 0.7 1.4e-19 70.2 0.4 1.8 2 0 0 2 2 2 1 Type 5 capsule protein repressor C-terminal domain Metallophos PF00149.28 gi|88603327|ref|YP_503505.1| - 1.9e-12 48.1 0.0 2.8e-12 47.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|88603327|ref|YP_503505.1| - 4.3e-06 27.0 0.0 1.8e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.11 gi|88603327|ref|YP_503505.1| - 0.049 11.9 0.0 0.074 11.3 0.0 1.2 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase AAA_26 PF13500.6 gi|88603327|ref|YP_503505.1| - 0.054 13.3 0.0 0.13 12.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|88603328|ref|YP_503506.1| - 7e-31 108.3 0.5 7e-31 108.3 0.5 7.4 1 1 2 3 3 1 1 AAA domain SbcCD_C PF13558.6 gi|88603328|ref|YP_503506.1| - 7.9e-14 51.7 0.1 2e-13 50.4 0.1 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|88603328|ref|YP_503506.1| - 8e-08 31.9 0.1 2e-07 30.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|88603328|ref|YP_503506.1| - 0.00018 20.7 0.2 0.00018 20.7 0.2 2.7 3 0 0 3 3 3 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|88603328|ref|YP_503506.1| - 0.011 16.3 0.0 0.011 16.3 0.0 5.0 3 2 0 3 3 2 0 ABC transporter AAA_30 PF13604.6 gi|88603328|ref|YP_503506.1| - 0.018 14.7 1.4 0.1 12.3 0.1 2.8 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|88603328|ref|YP_503506.1| - 0.019 14.7 0.0 0.019 14.7 0.0 3.7 4 2 1 6 6 6 0 AAA domain, putative AbiEii toxin, Type IV TA system cobW PF02492.19 gi|88603328|ref|YP_503506.1| - 0.025 14.2 1.0 0.14 11.8 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 gi|88603328|ref|YP_503506.1| - 0.027 13.9 25.2 0.11 12.0 25.2 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|88603328|ref|YP_503506.1| - 0.049 14.0 0.0 0.049 14.0 0.0 4.3 4 1 0 4 4 4 0 AAA ATPase domain NTPase_1 PF03266.15 gi|88603328|ref|YP_503506.1| - 0.055 13.4 1.8 0.25 11.2 0.3 2.9 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 gi|88603328|ref|YP_503506.1| - 0.063 13.2 0.4 0.54 10.1 0.1 2.6 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|88603328|ref|YP_503506.1| - 0.091 13.0 0.3 0.091 13.0 0.3 3.2 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|88603328|ref|YP_503506.1| - 0.096 12.2 0.1 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2935 PF11155.8 gi|88603328|ref|YP_503506.1| - 3.3 8.1 10.9 7 7.0 0.8 4.6 5 1 0 5 5 5 0 Domain of unknown function (DUF2935) Nup35_RRM PF05172.13 gi|88603329|ref|YP_503507.1| - 0.18 11.7 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif FmdE PF02663.14 gi|88603330|ref|YP_503508.1| - 6.6e-22 78.0 0.0 8.1e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.27 gi|88603331|ref|YP_503509.1| - 4.9e-30 104.8 0.0 6.4e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603331|ref|YP_503509.1| - 1e-09 38.7 0.0 4.9e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603331|ref|YP_503509.1| - 1.3e-06 28.0 0.0 2.2e-06 27.2 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88603331|ref|YP_503509.1| - 2.5e-05 24.9 0.1 5.3e-05 23.8 0.1 1.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|88603331|ref|YP_503509.1| - 0.00041 20.0 0.0 0.00086 19.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|88603331|ref|YP_503509.1| - 0.00044 20.4 0.6 0.018 15.2 0.6 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|88603331|ref|YP_503509.1| - 0.004 17.1 0.1 0.19 11.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|88603331|ref|YP_503509.1| - 0.0044 16.8 0.1 0.024 14.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|88603331|ref|YP_503509.1| - 0.0044 16.6 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|88603331|ref|YP_503509.1| - 0.011 16.0 0.0 0.058 13.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|88603331|ref|YP_503509.1| - 0.014 15.0 0.2 0.022 14.3 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|88603331|ref|YP_503509.1| - 0.02 14.8 0.4 0.038 13.9 0.2 1.7 1 1 1 2 2 2 0 NTPase AAA_22 PF13401.6 gi|88603331|ref|YP_503509.1| - 0.027 14.7 0.5 0.11 12.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|88603331|ref|YP_503509.1| - 0.029 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|88603331|ref|YP_503509.1| - 0.031 13.1 0.2 1.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|88603331|ref|YP_503509.1| - 0.036 14.6 0.1 0.071 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|88603331|ref|YP_503509.1| - 0.038 14.4 0.4 0.074 13.4 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|88603331|ref|YP_503509.1| - 0.054 13.7 0.1 0.2 11.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|88603331|ref|YP_503509.1| - 0.055 13.4 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|88603331|ref|YP_503509.1| - 0.058 13.8 0.6 0.31 11.5 0.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|88603331|ref|YP_503509.1| - 0.075 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|88603331|ref|YP_503509.1| - 0.078 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF3584 PF12128.8 gi|88603331|ref|YP_503509.1| - 0.097 10.2 0.2 0.13 9.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.6 gi|88603331|ref|YP_503509.1| - 0.12 12.7 0.8 0.52 10.6 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|88603331|ref|YP_503509.1| - 0.15 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC-3 PF00950.17 gi|88603332|ref|YP_503510.1| - 1.7e-48 165.3 34.1 2e-48 165.2 34.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|88603332|ref|YP_503510.1| - 1.2e-07 31.0 33.5 2.2e-07 30.2 33.2 1.5 1 1 0 1 1 1 1 FecCD transport family ZnuA PF01297.17 gi|88603333|ref|YP_503511.1| - 1.4e-13 50.8 0.3 2.1e-13 50.3 0.3 1.4 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC-3 PF00950.17 gi|88603334|ref|YP_503512.1| - 1.5e-63 214.7 30.7 1.8e-63 214.4 30.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|88603334|ref|YP_503512.1| - 0.36 9.8 34.2 0.23 10.5 32.5 1.5 1 1 0 1 1 1 0 FecCD transport family ABC_tran PF00005.27 gi|88603335|ref|YP_503513.1| - 3.2e-29 102.2 0.0 4.6e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603335|ref|YP_503513.1| - 5.5e-13 49.4 0.9 2.6e-05 24.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|88603335|ref|YP_503513.1| - 4.8e-06 27.2 0.2 7.6e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|88603335|ref|YP_503513.1| - 8.6e-06 25.3 0.0 7.9e-05 22.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88603335|ref|YP_503513.1| - 8.1e-05 22.3 0.1 0.00023 20.8 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88603335|ref|YP_503513.1| - 0.00039 20.2 0.4 0.054 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88603335|ref|YP_503513.1| - 0.0004 20.3 0.0 0.0016 18.4 0.0 1.9 2 1 1 3 3 2 1 RsgA GTPase AAA PF00004.29 gi|88603335|ref|YP_503513.1| - 0.00047 20.6 0.5 0.016 15.6 0.5 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|88603335|ref|YP_503513.1| - 0.00051 19.7 0.0 0.00093 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88603335|ref|YP_503513.1| - 0.0006 19.6 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|88603335|ref|YP_503513.1| - 0.0017 18.6 0.1 0.051 13.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain PIF1 PF05970.14 gi|88603335|ref|YP_503513.1| - 0.0074 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase AAA_16 PF13191.6 gi|88603335|ref|YP_503513.1| - 0.011 16.2 0.1 0.023 15.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|88603335|ref|YP_503513.1| - 0.014 14.5 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|88603335|ref|YP_503513.1| - 0.022 14.5 0.0 0.043 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|88603335|ref|YP_503513.1| - 0.03 14.3 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|88603335|ref|YP_503513.1| - 0.054 13.4 0.0 0.17 11.8 0.0 1.8 2 1 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|88603335|ref|YP_503513.1| - 0.057 13.6 0.0 0.33 11.1 0.0 2.0 2 1 1 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|88603335|ref|YP_503513.1| - 0.078 13.2 0.1 0.22 11.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|88603335|ref|YP_503513.1| - 0.086 12.2 0.0 0.28 10.5 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|88603335|ref|YP_503513.1| - 0.089 12.9 0.0 0.29 11.2 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|88603335|ref|YP_503513.1| - 0.091 12.8 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|88603335|ref|YP_503513.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein cobW PF02492.19 gi|88603335|ref|YP_503513.1| - 0.15 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|88603335|ref|YP_503513.1| - 0.17 11.7 0.1 4.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|88603335|ref|YP_503513.1| - 0.19 10.8 0.1 0.77 8.9 0.0 1.9 2 1 1 3 3 3 0 NB-ARC domain AAA_11 PF13086.6 gi|88603335|ref|YP_503513.1| - 0.2 11.4 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ZnuA PF01297.17 gi|88603336|ref|YP_503514.1| - 3.8e-57 193.6 0.0 4.9e-57 193.3 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Fe_dep_repr_C PF02742.15 gi|88603337|ref|YP_503515.1| - 1e-14 54.3 0.1 1.6e-14 53.7 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|88603337|ref|YP_503515.1| - 2.1e-07 31.0 0.0 3.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|88603337|ref|YP_503515.1| - 1.2e-06 28.3 0.0 6e-06 26.1 0.0 1.9 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|88603337|ref|YP_503515.1| - 1.4e-05 24.8 0.0 2.9e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|88603337|ref|YP_503515.1| - 0.00019 21.4 0.0 0.0047 17.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|88603337|ref|YP_503515.1| - 0.0003 20.7 0.0 0.00062 19.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|88603337|ref|YP_503515.1| - 0.0012 18.8 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|88603337|ref|YP_503515.1| - 0.0026 18.1 0.0 0.013 15.8 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.6 gi|88603337|ref|YP_503515.1| - 0.0057 16.2 0.0 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Topoisom_bac PF01131.20 gi|88603337|ref|YP_503515.1| - 0.0057 15.7 0.0 0.0063 15.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase HTH_40 PF14493.6 gi|88603337|ref|YP_503515.1| - 0.0075 16.7 0.0 0.07 13.6 0.0 2.0 1 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88603337|ref|YP_503515.1| - 0.0077 16.1 0.0 0.025 14.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|88603337|ref|YP_503515.1| - 0.0087 15.8 0.0 0.021 14.6 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain RPA_C PF08784.11 gi|88603337|ref|YP_503515.1| - 0.017 15.8 0.0 0.068 13.8 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal HTH_27 PF13463.6 gi|88603337|ref|YP_503515.1| - 0.036 14.6 0.0 0.65 10.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|88603337|ref|YP_503515.1| - 0.047 13.6 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|88603337|ref|YP_503515.1| - 0.07 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|88603337|ref|YP_503515.1| - 0.082 13.0 0.0 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 DprA winged helix domain HTH_23 PF13384.6 gi|88603337|ref|YP_503515.1| - 0.084 12.7 0.1 0.65 9.9 0.0 2.3 3 0 0 3 3 3 0 Homeodomain-like domain TrmB PF01978.19 gi|88603337|ref|YP_503515.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|88603337|ref|YP_503515.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MobB PF03205.14 gi|88603339|ref|YP_503517.1| - 6.4e-18 64.9 0.0 9.2e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 gi|88603339|ref|YP_503517.1| - 0.0051 16.4 0.0 0.0096 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|88603339|ref|YP_503517.1| - 0.021 14.6 0.1 0.044 13.6 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Pox_A32 PF04665.12 gi|88603339|ref|YP_503517.1| - 0.031 13.7 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein PRK PF00485.18 gi|88603339|ref|YP_503517.1| - 0.032 14.0 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF463 PF04317.12 gi|88603339|ref|YP_503517.1| - 0.044 12.7 0.0 0.07 12.1 0.0 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 AAA_18 PF13238.6 gi|88603339|ref|YP_503517.1| - 0.055 14.0 0.0 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|88603339|ref|YP_503517.1| - 0.058 12.7 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 VirC1 protein cobW PF02492.19 gi|88603339|ref|YP_503517.1| - 0.074 12.6 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|88603339|ref|YP_503517.1| - 0.086 12.6 0.0 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|88603339|ref|YP_503517.1| - 0.086 12.6 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|88603339|ref|YP_503517.1| - 0.089 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MeaB PF03308.16 gi|88603339|ref|YP_503517.1| - 0.11 11.5 0.1 0.19 10.7 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|88603339|ref|YP_503517.1| - 0.11 12.5 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|88603339|ref|YP_503517.1| - 0.12 12.7 0.1 0.26 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|88603339|ref|YP_503517.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 gi|88603339|ref|YP_503517.1| - 0.18 11.7 0.1 0.54 10.2 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|88603339|ref|YP_503517.1| - 0.2 11.8 0.1 0.33 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|88603339|ref|YP_503517.1| - 0.21 11.2 0.0 0.36 10.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PAS_9 PF13426.7 gi|88603340|ref|YP_503518.1| - 2.2e-13 50.4 0.1 7e-13 48.7 0.1 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88603340|ref|YP_503518.1| - 1.1e-10 41.7 0.0 2e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold HAMP PF00672.25 gi|88603340|ref|YP_503518.1| - 2.2e-09 37.6 0.1 7.3e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 HAMP domain PAS PF00989.25 gi|88603340|ref|YP_503518.1| - 2.4e-09 37.2 0.0 5.4e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|88603340|ref|YP_503518.1| - 1.1e-06 28.5 0.0 2.7e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|88603340|ref|YP_503518.1| - 0.063 13.3 0.8 1.3 9.1 0.0 3.2 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 gi|88603340|ref|YP_503518.1| - 0.18 11.6 2.1 1.5 8.5 0.1 2.4 2 0 0 2 2 2 0 Cache domain PapC_N PF13954.6 gi|88603341|ref|YP_503519.1| - 0.0035 17.4 0.0 0.032 14.3 0.0 2.0 2 0 0 2 2 2 1 PapC N-terminal domain DUF2268 PF10026.9 gi|88603341|ref|YP_503519.1| - 0.052 13.1 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Aspzincin_M35 PF14521.6 gi|88603341|ref|YP_503519.1| - 0.057 14.0 0.0 0.095 13.2 0.0 1.3 1 0 0 1 1 1 0 Lysine-specific metallo-endopeptidase DUF4157 PF13699.6 gi|88603341|ref|YP_503519.1| - 0.17 12.2 0.3 0.27 11.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) DUF1290 PF06947.12 gi|88603342|ref|YP_503520.1| - 0.0075 16.3 2.5 0.74 9.9 0.5 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1290) DUF2109 PF09882.9 gi|88603343|ref|YP_503521.1| - 1.4e-32 111.5 2.0 1.7e-32 111.2 2.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) DUF2108 PF09881.9 gi|88603344|ref|YP_503522.1| - 3.3e-24 84.6 8.9 3.6e-24 84.5 8.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) DUF2107 PF09880.9 gi|88603345|ref|YP_503523.1| - 9.4e-30 102.6 4.6 1.1e-29 102.4 4.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) MitoNEET_N PF10660.9 gi|88603345|ref|YP_503523.1| - 0.28 11.2 1.5 0.32 11.0 0.2 1.7 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF2106 PF09879.9 gi|88603346|ref|YP_503524.1| - 1.3e-63 213.1 0.4 1.5e-63 212.9 0.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) She9_MDM33 PF05546.11 gi|88603346|ref|YP_503524.1| - 0.24 11.2 0.1 0.42 10.4 0.1 1.4 1 1 1 2 2 2 0 She9 / Mdm33 family DUF2105 PF09878.9 gi|88603347|ref|YP_503525.1| - 5.7e-76 254.7 16.1 6.3e-76 254.6 16.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) MnhB PF04039.13 gi|88603347|ref|YP_503525.1| - 0.088 13.1 13.1 0.28 11.5 8.8 2.4 1 1 1 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter NADHdeh_related PF10125.9 gi|88603348|ref|YP_503526.1| - 2.8e-101 337.4 14.1 3.1e-101 337.3 14.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein NADHdh PF00146.21 gi|88603349|ref|YP_503527.1| - 7.6e-30 104.2 26.9 1.1e-29 103.7 26.9 1.2 1 0 0 1 1 1 1 NADH dehydrogenase FA_desaturase PF00487.24 gi|88603349|ref|YP_503527.1| - 1.6 8.5 11.8 1.6 8.5 3.2 2.3 2 0 0 2 2 2 0 Fatty acid desaturase Tmemb_55A PF09788.9 gi|88603350|ref|YP_503528.1| - 0.053 12.6 0.3 0.064 12.3 0.3 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A DUF1959 PF09218.10 gi|88603351|ref|YP_503529.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1959) HTH_8 PF02954.19 gi|88603351|ref|YP_503529.1| - 0.027 14.2 0.0 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family VP40 PF07447.12 gi|88603351|ref|YP_503529.1| - 0.072 12.2 0.0 0.09 11.9 0.0 1.0 1 0 0 1 1 1 0 Matrix protein VP40 HalOD1 PF18545.1 gi|88603351|ref|YP_503529.1| - 0.15 12.3 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Halobacterial output domain 1 Oxidored_q6 PF01058.22 gi|88603352|ref|YP_503530.1| - 1.6e-22 79.8 0.1 1.9e-22 79.5 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|88603353|ref|YP_503531.1| - 6.4e-49 166.5 1.3 1.9e-39 135.4 0.3 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|88603353|ref|YP_503531.1| - 2.7e-12 46.4 2.3 1.5e-11 43.9 0.1 2.9 4 0 0 4 4 4 1 Nickel-dependent hydrogenase Fer4_10 PF13237.6 gi|88603354|ref|YP_503532.1| - 1.8e-19 69.5 22.7 3.8e-08 33.3 8.2 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|88603354|ref|YP_503532.1| - 1.8e-18 65.5 34.1 4.1e-07 29.5 0.8 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603354|ref|YP_503532.1| - 2.2e-18 66.6 52.1 1.7e-08 34.9 10.8 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603354|ref|YP_503532.1| - 3.1e-15 56.1 56.3 1.7e-07 31.3 7.6 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603354|ref|YP_503532.1| - 4.5e-15 55.0 33.3 0.00015 21.7 1.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603354|ref|YP_503532.1| - 1.7e-14 53.7 27.4 1.9e-06 27.9 10.2 3.3 2 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603354|ref|YP_503532.1| - 1.1e-13 50.4 33.3 0.00018 21.4 3.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603354|ref|YP_503532.1| - 2.3e-13 50.4 25.9 3.1e-07 30.8 8.4 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603354|ref|YP_503532.1| - 1.3e-12 47.2 32.8 0.0035 17.7 0.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603354|ref|YP_503532.1| - 7.1e-11 42.9 27.0 6.4e-05 23.8 9.8 3.7 2 1 2 4 4 4 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|88603354|ref|YP_503532.1| - 1.6e-08 34.9 30.2 9.5e-05 22.9 10.6 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603354|ref|YP_503532.1| - 1.5e-07 31.9 44.8 0.04 14.9 3.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88603354|ref|YP_503532.1| - 3.6e-06 27.6 19.3 0.24 12.2 0.4 4.2 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|88603354|ref|YP_503532.1| - 1.8e-05 25.2 29.6 0.034 14.7 0.9 4.3 4 0 0 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88603354|ref|YP_503532.1| - 2.2e-05 25.2 26.7 0.044 14.6 0.6 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88603354|ref|YP_503532.1| - 0.15 12.3 30.7 0.17 12.1 1.7 4.1 1 1 3 4 4 4 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|88603354|ref|YP_503532.1| - 1.5 9.0 17.2 8.9 6.5 0.4 3.8 2 1 2 4 4 4 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Molydop_binding PF01568.21 gi|88603355|ref|YP_503533.1| - 6.6e-11 42.2 0.0 8.1e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|88603356|ref|YP_503534.1| - 5.5e-12 45.4 0.0 1.1e-11 44.3 0.0 1.5 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|88603356|ref|YP_503534.1| - 0.54 10.3 3.0 1.2 9.1 3.0 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.11 gi|88603357|ref|YP_503535.1| - 5e-71 240.6 0.0 5.9e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|88603357|ref|YP_503535.1| - 0.00095 18.6 0.0 0.37 10.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Aconitase_2_N PF06434.13 gi|88603357|ref|YP_503535.1| - 0.19 11.4 0.0 0.43 10.2 0.0 1.5 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus PIN PF01850.21 gi|88603359|ref|YP_503537.1| - 3.3e-10 40.5 0.0 4.4e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain UvdE PF03851.14 gi|88603359|ref|YP_503537.1| - 0.0047 16.2 0.3 0.032 13.5 0.1 2.0 2 0 0 2 2 2 1 UV-endonuclease UvdE GXGXG PF01493.19 gi|88603360|ref|YP_503538.1| - 5.3e-09 35.9 19.6 3.5e-08 33.3 18.8 2.6 1 1 1 2 2 2 2 GXGXG motif TFIID-18kDa PF02269.16 gi|88603360|ref|YP_503538.1| - 0.14 12.2 0.0 0.73 9.9 0.0 2.0 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit Shufflon_N PF04917.12 gi|88603360|ref|YP_503538.1| - 6 6.2 9.6 0.15 11.5 0.5 2.1 1 1 1 2 2 2 0 Bacterial shufflon protein, N-terminal constant region UDPG_MGDP_dh_N PF03721.14 gi|88603361|ref|YP_503539.1| - 9.1e-56 188.4 0.1 1.4e-55 187.8 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|88603361|ref|YP_503539.1| - 2.3e-38 130.3 0.1 4.1e-38 129.5 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|88603361|ref|YP_503539.1| - 2e-28 98.8 0.0 9.1e-26 90.3 0.0 3.1 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|88603361|ref|YP_503539.1| - 4.7e-06 27.1 0.1 0.085 13.4 0.0 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|88603361|ref|YP_503539.1| - 1.2e-05 24.7 0.0 2.8e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|88603361|ref|YP_503539.1| - 0.00015 21.7 0.0 0.00062 19.7 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|88603361|ref|YP_503539.1| - 0.00017 22.1 0.0 0.00047 20.7 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|88603361|ref|YP_503539.1| - 0.0028 17.6 0.0 0.0072 16.3 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|88603361|ref|YP_503539.1| - 0.013 14.8 0.0 0.024 13.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DpaA_N PF16924.5 gi|88603361|ref|YP_503539.1| - 0.051 13.7 0.1 6.2 6.9 0.0 3.1 3 1 1 4 4 4 0 Dipicolinate synthase subunit A N-terminal domain NAD_binding_7 PF13241.6 gi|88603361|ref|YP_503539.1| - 0.086 13.3 0.0 0.37 11.2 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding Prok-E2_A PF14457.6 gi|88603361|ref|YP_503539.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic E2 family A NTP_transferase PF00483.23 gi|88603362|ref|YP_503540.1| - 3.5e-30 105.4 0.0 4e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|88603362|ref|YP_503540.1| - 1.7e-10 41.5 0.0 2.7e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88603362|ref|YP_503540.1| - 0.00086 19.1 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|88603362|ref|YP_503540.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase PTPS_related PF10131.9 gi|88603363|ref|YP_503541.1| - 0.00051 18.5 16.3 0.00051 18.5 16.3 2.0 1 1 0 2 2 2 2 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein EamA PF00892.20 gi|88603364|ref|YP_503542.1| - 3.3e-07 30.5 21.6 1.8e-06 28.1 12.9 2.0 1 1 1 2 2 2 2 EamA-like transporter family Multi_Drug_Res PF00893.19 gi|88603364|ref|YP_503542.1| - 0.00056 20.5 12.0 0.0027 18.3 12.0 1.9 1 1 0 1 1 1 1 Small Multidrug Resistance protein TMEM234 PF10639.9 gi|88603364|ref|YP_503542.1| - 0.0034 17.4 3.8 0.0042 17.1 3.8 1.4 1 1 0 1 1 1 1 Putative transmembrane family 234 Mg_trans_NIPA PF05653.14 gi|88603364|ref|YP_503542.1| - 0.016 14.3 8.5 0.019 14.1 8.5 1.0 1 0 0 1 1 1 0 Magnesium transporter NIPA CRT-like PF08627.10 gi|88603364|ref|YP_503542.1| - 0.14 11.0 9.7 0.014 14.4 5.1 1.7 1 1 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like Glycos_transf_2 PF00535.26 gi|88603365|ref|YP_503543.1| - 1.8e-30 106.0 0.0 2.4e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88603365|ref|YP_503543.1| - 1.4e-09 38.2 0.0 2.9e-09 37.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|88603365|ref|YP_503543.1| - 4.3e-07 29.7 0.0 9.5e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|88603365|ref|YP_503543.1| - 2.4e-06 27.9 0.0 5e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|88603365|ref|YP_503543.1| - 0.0087 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Epimerase PF01370.21 gi|88603366|ref|YP_503544.1| - 4.8e-47 160.4 0.0 6e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88603366|ref|YP_503544.1| - 9.2e-46 156.8 0.0 1.4e-45 156.1 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|88603366|ref|YP_503544.1| - 1.3e-10 40.9 0.0 2.2e-09 36.9 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|88603366|ref|YP_503544.1| - 8.7e-10 38.2 0.0 5.7e-05 22.4 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 gi|88603366|ref|YP_503544.1| - 2.7e-08 33.2 0.0 4.7e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|88603366|ref|YP_503544.1| - 4.1e-05 22.8 0.0 6.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|88603366|ref|YP_503544.1| - 0.0002 20.9 0.0 0.0003 20.3 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|88603366|ref|YP_503544.1| - 0.04 13.8 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 KR domain PRP4 PF08799.11 gi|88603366|ref|YP_503544.1| - 0.17 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like PDDEXK_9 PF08011.11 gi|88603367|ref|YP_503545.1| - 2.4e-16 59.6 0.0 2.8e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ABC_tran PF00005.27 gi|88603369|ref|YP_503547.1| - 1.5e-33 116.2 0.0 2.5e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|88603369|ref|YP_503547.1| - 6.8e-11 42.0 0.1 1.3e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 gi|88603369|ref|YP_503547.1| - 9.2e-10 38.6 16.5 1.3e-09 38.1 16.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_29 PF13555.6 gi|88603369|ref|YP_503547.1| - 0.00023 20.8 0.2 0.00068 19.3 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|88603369|ref|YP_503547.1| - 0.00087 18.9 0.9 0.069 12.7 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|88603369|ref|YP_503547.1| - 0.0013 19.0 0.1 0.042 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|88603369|ref|YP_503547.1| - 0.0025 18.2 0.1 0.0043 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|88603369|ref|YP_503547.1| - 0.005 16.8 0.1 0.013 15.5 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_5 PF07728.14 gi|88603369|ref|YP_503547.1| - 0.044 13.8 0.0 0.26 11.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|88603369|ref|YP_503547.1| - 0.052 13.3 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|88603369|ref|YP_503547.1| - 0.053 12.8 0.1 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 gi|88603369|ref|YP_503547.1| - 0.068 13.2 0.2 0.26 11.3 0.1 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|88603369|ref|YP_503547.1| - 0.079 13.5 0.0 0.3 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|88603369|ref|YP_503547.1| - 0.092 11.5 0.4 1.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|88603369|ref|YP_503547.1| - 0.13 12.5 0.3 2 8.7 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF1652 PF07865.11 gi|88603369|ref|YP_503547.1| - 0.15 11.9 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) DEAD PF00270.29 gi|88603369|ref|YP_503547.1| - 0.16 11.7 0.7 2.6 7.8 0.7 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|88603369|ref|YP_503547.1| - 0.17 12.1 1.1 0.23 11.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain Methyltransf_14 PF08484.11 gi|88603370|ref|YP_503548.1| - 2.5e-55 186.6 0.0 3.8e-55 186.1 0.0 1.3 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Methyltransf_13 PF08421.11 gi|88603370|ref|YP_503548.1| - 7.9e-18 64.5 0.1 1.5e-17 63.5 0.1 1.5 1 0 0 1 1 1 1 Putative zinc binding domain Methyltransf_23 PF13489.6 gi|88603370|ref|YP_503548.1| - 3.2e-09 36.9 0.0 4.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|88603372|ref|YP_503550.1| - 2.1e-14 53.4 0.0 4.5e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88603372|ref|YP_503550.1| - 1.5e-13 51.4 0.0 2.4e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88603372|ref|YP_503550.1| - 0.0029 17.6 0.0 0.42 10.6 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|88603372|ref|YP_503550.1| - 0.15 12.5 0.0 0.38 11.2 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 PglD_N PF17836.1 gi|88603373|ref|YP_503551.1| - 1.3e-14 54.6 3.5 1.5e-14 54.4 0.3 2.3 2 0 0 2 2 2 1 PglD N-terminal domain Hexapep PF00132.24 gi|88603373|ref|YP_503551.1| - 5.5e-10 38.6 17.7 2.1e-05 24.0 4.9 3.9 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) B_solenoid_ydck PF18836.1 gi|88603373|ref|YP_503551.1| - 0.08 12.8 0.3 0.23 11.4 0.3 1.9 1 1 0 1 1 1 0 Beta solenoid repeat from YDCK Hexapep_2 PF14602.6 gi|88603373|ref|YP_503551.1| - 0.15 11.9 14.2 0.86 9.4 3.4 4.1 2 2 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|88603374|ref|YP_503552.1| - 9.5e-122 406.8 0.0 1.2e-121 406.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|88603374|ref|YP_503552.1| - 1.4e-09 37.6 0.1 2.1e-09 37.1 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GTSE1_N PF15259.6 gi|88603375|ref|YP_503553.1| - 0.048 13.9 0.0 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 Methyltransf_23 PF13489.6 gi|88603375|ref|YP_503553.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain E7R PF17467.2 gi|88603375|ref|YP_503553.1| - 0.16 12.1 0.1 0.16 12.1 0.1 2.4 2 0 0 2 2 2 0 Viral Protein E7 Glycos_transf_1 PF00534.20 gi|88603377|ref|YP_503555.1| - 7.9e-40 136.2 0.0 1.2e-39 135.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88603377|ref|YP_503555.1| - 1.1e-27 97.1 0.0 1.7e-27 96.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88603377|ref|YP_503555.1| - 1.4e-10 41.5 0.0 2.5e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|88603377|ref|YP_503555.1| - 1.8e-06 28.2 0.0 3.7e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2097 PF09870.9 gi|88603377|ref|YP_503555.1| - 0.12 12.5 0.2 0.51 10.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2097) Glyco_trans_4_4 PF13579.6 gi|88603377|ref|YP_503555.1| - 0.2 12.1 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|88603378|ref|YP_503556.1| - 6.9e-39 133.1 0.0 1.1e-38 132.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88603378|ref|YP_503556.1| - 6.6e-27 94.6 0.0 9.3e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88603378|ref|YP_503556.1| - 1.2e-13 51.4 0.0 2.7e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|88603378|ref|YP_503556.1| - 1.5e-06 28.5 0.0 2.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|88603378|ref|YP_503556.1| - 0.043 14.2 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Methyltransf_23 PF13489.6 gi|88603379|ref|YP_503557.1| - 4e-16 59.3 0.0 1.3e-15 57.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88603379|ref|YP_503557.1| - 2.7e-11 44.0 0.0 4.3e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88603379|ref|YP_503557.1| - 3.9e-08 33.9 0.0 2.9e-07 31.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603379|ref|YP_503557.1| - 8.5e-08 32.1 0.0 8.1e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88603379|ref|YP_503557.1| - 1.2e-06 29.1 0.0 3.8e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|88603379|ref|YP_503557.1| - 0.023 14.6 0.0 0.037 13.9 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|88603379|ref|YP_503557.1| - 0.024 14.0 0.0 0.4 9.9 0.0 2.1 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|88603379|ref|YP_503557.1| - 0.065 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.16 gi|88603379|ref|YP_503557.1| - 0.08 11.5 0.0 2.2 6.8 0.0 2.0 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 gi|88603379|ref|YP_503557.1| - 0.094 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB PrmA PF06325.13 gi|88603379|ref|YP_503557.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) GDP_Man_Dehyd PF16363.5 gi|88603380|ref|YP_503558.1| - 1.1e-135 452.4 0.0 1.3e-135 452.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|88603380|ref|YP_503558.1| - 7.9e-67 225.2 0.0 9.4e-67 225.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|88603380|ref|YP_503558.1| - 3.3e-05 23.1 0.0 5.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|88603380|ref|YP_503558.1| - 0.00012 21.3 0.0 0.00053 19.2 0.0 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|88603380|ref|YP_503558.1| - 0.054 12.7 0.0 0.08 12.1 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein Big_4 PF07532.11 gi|88603380|ref|YP_503558.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 4) NmrA PF05368.13 gi|88603380|ref|YP_503558.1| - 0.2 11.2 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family RVT_1 PF00078.27 gi|88603382|ref|YP_503560.1| - 1.2e-41 142.7 0.0 2.3e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88603382|ref|YP_503560.1| - 1.2e-29 102.3 1.2 2.7e-29 101.2 1.2 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88603382|ref|YP_503560.1| - 3.5e-24 84.6 9.5 1.1e-23 83.1 9.5 1.9 1 0 0 1 1 1 1 Group II intron, maturase-specific domain GDP_Man_Dehyd PF16363.5 gi|88603383|ref|YP_503561.1| - 3.9e-54 184.3 0.0 1.2e-53 182.7 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|88603383|ref|YP_503561.1| - 1.3e-50 172.1 0.0 1.6e-50 171.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|88603383|ref|YP_503561.1| - 3.7e-18 65.5 0.0 5.4e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|88603383|ref|YP_503561.1| - 1.6e-14 53.8 0.0 8.8e-14 51.3 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|88603383|ref|YP_503561.1| - 9.7e-08 31.4 0.0 1.9e-07 30.5 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|88603383|ref|YP_503561.1| - 2.9e-07 29.9 0.0 0.00013 21.2 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein KR PF08659.10 gi|88603383|ref|YP_503561.1| - 0.00018 21.5 1.7 0.00042 20.3 0.5 2.2 2 1 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 gi|88603383|ref|YP_503561.1| - 0.00046 20.1 0.0 0.00081 19.3 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|88603383|ref|YP_503561.1| - 0.036 13.6 0.0 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 NmrA-like family adh_short PF00106.25 gi|88603383|ref|YP_503561.1| - 0.038 13.5 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.27 gi|88603383|ref|YP_503561.1| - 0.074 13.6 0.0 0.17 12.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DDE_5 PF13546.6 gi|88603385|ref|YP_503563.1| - 3.3e-15 56.1 0.0 1e-14 54.5 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88603385|ref|YP_503563.1| - 3.1e-12 46.6 0.8 5e-12 45.9 0.8 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88603385|ref|YP_503563.1| - 3.5e-05 23.2 0.0 5.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 PIN PF01850.21 gi|88603386|ref|YP_503564.1| - 0.0014 19.1 1.1 0.0017 18.9 1.1 1.1 1 0 0 1 1 1 1 PIN domain Seadorna_VP7 PF07387.11 gi|88603386|ref|YP_503564.1| - 0.032 13.3 0.2 0.035 13.2 0.2 1.1 1 0 0 1 1 1 0 Seadornavirus VP7 Mut7-C PF01927.16 gi|88603386|ref|YP_503564.1| - 0.066 13.3 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain UDPG_MGDP_dh_N PF03721.14 gi|88603387|ref|YP_503565.1| - 8.5e-34 116.8 0.0 1.8e-33 115.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|88603387|ref|YP_503565.1| - 3.8e-21 75.5 0.0 1.4e-20 73.7 0.0 1.9 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|88603387|ref|YP_503565.1| - 2.5e-19 69.3 0.0 5.3e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain FAM117 PF15388.6 gi|88603387|ref|YP_503565.1| - 0.3 10.5 0.0 0.59 9.5 0.0 1.4 1 0 0 1 1 1 0 Protein Family FAM117 GFO_IDH_MocA PF01408.22 gi|88603388|ref|YP_503566.1| - 8.2e-20 71.8 0.1 1.3e-19 71.2 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|88603388|ref|YP_503566.1| - 8.7e-08 32.5 0.0 1.5e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|88603388|ref|YP_503566.1| - 1.3e-05 24.6 0.0 2.6e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|88603388|ref|YP_503566.1| - 0.00037 21.0 0.0 0.00086 19.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|88603388|ref|YP_503566.1| - 0.0004 20.8 0.1 0.0014 19.0 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|88603388|ref|YP_503566.1| - 0.0021 18.7 0.2 0.0075 16.9 0.2 1.9 2 0 0 2 2 2 1 CoA binding domain OCD_Mu_crystall PF02423.15 gi|88603388|ref|YP_503566.1| - 0.06 12.3 0.0 0.099 11.6 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family UDPG_MGDP_dh_N PF03721.14 gi|88603388|ref|YP_503566.1| - 0.067 12.8 0.6 0.91 9.1 0.5 2.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|88603388|ref|YP_503566.1| - 0.073 12.9 0.1 0.88 9.4 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain zf-Paramyx-P PF13008.7 gi|88603388|ref|YP_503566.1| - 0.16 11.4 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein DegT_DnrJ_EryC1 PF01041.17 gi|88603389|ref|YP_503567.1| - 5.7e-132 440.4 0.0 6.9e-132 440.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|88603389|ref|YP_503567.1| - 1.8e-07 30.7 0.0 1.1e-06 28.2 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|88603389|ref|YP_503567.1| - 0.0014 18.0 0.0 0.0032 16.8 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88603389|ref|YP_503567.1| - 0.019 13.5 0.0 0.027 13.0 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Hexapep PF00132.24 gi|88603390|ref|YP_503568.1| - 6.1e-23 79.6 18.3 9.4e-07 28.3 0.5 5.1 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|88603390|ref|YP_503568.1| - 2.2e-12 46.5 10.8 3.1e-05 23.6 0.3 4.8 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase MCR_beta PF02241.18 gi|88603391|ref|YP_503569.1| - 2.3e-136 453.2 3.7 2.3e-136 453.2 3.7 1.4 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|88603391|ref|YP_503569.1| - 8.3e-79 263.5 0.2 1.2e-78 262.9 0.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain CxC2 PF18803.1 gi|88603391|ref|YP_503569.1| - 0.14 12.4 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 CxC2 like cysteine cluster associated with KDZ transposases MCR_D PF02505.14 gi|88603392|ref|YP_503570.1| - 3.1e-53 179.5 0.1 3.5e-53 179.3 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D Plexin_cytopl PF08337.12 gi|88603392|ref|YP_503570.1| - 0.043 12.5 0.0 0.051 12.3 0.0 1.1 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain MCR_C PF04609.12 gi|88603393|ref|YP_503571.1| - 2.6e-07 30.0 3.3 1.9e-06 27.2 3.3 2.3 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|88603394|ref|YP_503572.1| - 5.8e-131 435.1 0.1 6.5e-131 435.0 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|88603395|ref|YP_503573.1| - 2.5e-151 502.6 0.1 3.7e-151 502.0 0.1 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|88603395|ref|YP_503573.1| - 9.3e-67 223.3 1.0 1.7e-66 222.4 1.0 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|88603395|ref|YP_503573.1| - 0.0012 18.8 0.0 1.4 9.0 0.0 3.2 3 0 0 3 3 3 2 BofC C-terminal domain MCR_beta_N PF02783.15 gi|88603395|ref|YP_503573.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain PIN PF01850.21 gi|88603396|ref|YP_503574.1| - 1.9e-22 80.1 0.0 2.1e-22 79.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|88603396|ref|YP_503574.1| - 0.0016 19.2 0.0 0.0026 18.5 0.0 1.3 1 1 0 1 1 1 1 PIN domain CBP_BcsR PF10945.8 gi|88603396|ref|YP_503574.1| - 0.2 11.2 0.2 0.46 10.0 0.0 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsR MazE_antitoxin PF04014.18 gi|88603397|ref|YP_503575.1| - 0.00078 19.3 0.4 0.0037 17.2 0.4 2.1 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|88603397|ref|YP_503575.1| - 0.0012 18.9 0.1 0.0021 18.1 0.1 1.4 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system DUF104 PF01954.16 gi|88603397|ref|YP_503575.1| - 0.04 14.4 0.5 0.11 13.0 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF104 Dor1 PF04124.12 gi|88603397|ref|YP_503575.1| - 0.055 12.1 0.1 0.062 12.0 0.1 1.1 1 0 0 1 1 1 0 Dor1-like family LamB_YcsF PF03746.16 gi|88603397|ref|YP_503575.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 LamB/YcsF family AbrB-like PF14250.6 gi|88603397|ref|YP_503575.1| - 0.15 12.1 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 AbrB-like transcriptional regulator PIN PF01850.21 gi|88603398|ref|YP_503576.1| - 1e-15 58.3 1.7 1.1e-15 58.1 1.7 1.0 1 0 0 1 1 1 1 PIN domain CGGC PF08821.11 gi|88603399|ref|YP_503577.1| - 7.3e-31 106.5 0.2 8.7e-31 106.3 0.2 1.1 1 0 0 1 1 1 1 CGGC domain PIN PF01850.21 gi|88603401|ref|YP_503579.1| - 2.9e-11 43.9 0.3 3.2e-11 43.8 0.3 1.0 1 0 0 1 1 1 1 PIN domain Tenui_NS3 PF05310.12 gi|88603401|ref|YP_503579.1| - 0.054 13.6 0.0 0.061 13.4 0.0 1.1 1 0 0 1 1 1 0 Tenuivirus movement protein Radical_SAM PF04055.21 gi|88603402|ref|YP_503580.1| - 8.5e-13 49.0 0.0 1.4e-12 48.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88603402|ref|YP_503580.1| - 5.1e-05 23.4 0.0 0.00011 22.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rrf2 PF02082.20 gi|88603402|ref|YP_503580.1| - 0.00077 19.8 0.0 0.0021 18.4 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Fer4_12 PF13353.6 gi|88603402|ref|YP_503580.1| - 0.0073 16.6 0.0 0.028 14.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain HTH_9 PF08221.11 gi|88603402|ref|YP_503580.1| - 0.013 15.6 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|88603402|ref|YP_503580.1| - 0.016 15.1 0.1 0.051 13.5 0.1 1.9 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|88603402|ref|YP_503580.1| - 0.02 14.7 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|88603402|ref|YP_503580.1| - 0.052 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_42 PF06224.12 gi|88603402|ref|YP_503580.1| - 0.064 12.8 0.0 0.088 12.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|88603402|ref|YP_503580.1| - 0.12 12.8 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.20 gi|88603402|ref|YP_503580.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoB_N PF02421.18 gi|88603403|ref|YP_503581.1| - 7.3e-49 165.3 0.1 1.1e-48 164.8 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|88603403|ref|YP_503581.1| - 2.8e-26 92.0 16.3 1.2e-14 54.5 5.7 2.8 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|88603403|ref|YP_503581.1| - 6.7e-16 58.4 0.0 1.1e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|88603403|ref|YP_503581.1| - 1.4e-10 40.7 3.1 1.4e-10 40.7 3.1 3.3 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus PduV-EutP PF10662.9 gi|88603403|ref|YP_503581.1| - 0.0018 18.0 0.0 0.0042 16.8 0.0 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 gi|88603403|ref|YP_503581.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.23 gi|88603403|ref|YP_503581.1| - 0.025 14.6 0.4 0.65 10.0 0.0 2.3 2 0 0 2 2 2 0 Dynamin family SRPRB PF09439.10 gi|88603403|ref|YP_503581.1| - 0.039 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|88603403|ref|YP_503581.1| - 0.076 12.9 0.4 2.9 7.8 0.0 2.5 2 1 0 2 2 2 0 RsgA GTPase Roc PF08477.13 gi|88603403|ref|YP_503581.1| - 0.13 12.4 0.1 0.44 10.8 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase FeoA PF04023.14 gi|88603404|ref|YP_503582.1| - 4.1e-18 65.4 0.8 4.4e-18 65.3 0.8 1.0 1 0 0 1 1 1 1 FeoA domain Neisseria_PilC PF05567.11 gi|88603404|ref|YP_503582.1| - 0.065 12.2 0.0 0.065 12.2 0.0 1.1 1 0 0 1 1 1 0 Neisseria PilC beta-propeller domain DUF2437 PF10370.9 gi|88603404|ref|YP_503582.1| - 0.13 13.2 0.0 0.2 12.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2437) Nitro_FeMo-Co PF02579.17 gi|88603405|ref|YP_503583.1| - 1.2e-20 73.6 0.0 1.4e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF5320 PF17253.2 gi|88603406|ref|YP_503584.1| - 9.7 7.3 8.8 60 4.8 8.8 2.0 1 1 0 1 1 1 0 Family of unknown function (DUF5320) DUF134 PF02001.16 gi|88603407|ref|YP_503585.1| - 4.2e-17 62.5 0.0 5e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|88603407|ref|YP_503585.1| - 1.1e-08 34.6 0.0 1.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|88603407|ref|YP_503585.1| - 2.9e-06 27.3 0.1 3.4e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|88603407|ref|YP_503585.1| - 6.3e-06 25.6 0.1 8.6e-06 25.2 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|88603407|ref|YP_503585.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|88603407|ref|YP_503585.1| - 0.00094 19.1 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.6 gi|88603407|ref|YP_503585.1| - 0.0023 17.9 0.1 0.0036 17.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|88603407|ref|YP_503585.1| - 0.0078 16.3 0.0 0.015 15.4 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|88603407|ref|YP_503585.1| - 0.0092 15.7 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.6 gi|88603407|ref|YP_503585.1| - 0.031 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|88603407|ref|YP_503585.1| - 0.034 14.3 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|88603407|ref|YP_503585.1| - 0.063 13.2 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|88603407|ref|YP_503585.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix GerE PF00196.19 gi|88603407|ref|YP_503585.1| - 0.2 11.3 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family CbiA PF01656.23 gi|88603408|ref|YP_503586.1| - 5.8e-19 68.4 0.0 7e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|88603408|ref|YP_503586.1| - 9.1e-15 54.8 3.5 3.8e-07 29.8 0.2 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|88603408|ref|YP_503586.1| - 5.3e-11 41.9 17.9 1.7e-05 24.5 5.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603408|ref|YP_503586.1| - 9.9e-10 38.4 12.0 1.9e-09 37.5 12.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603408|ref|YP_503586.1| - 7e-08 32.1 14.6 0.00087 19.2 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603408|ref|YP_503586.1| - 1.4e-07 31.3 17.0 0.001 19.0 4.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603408|ref|YP_503586.1| - 1.5e-07 31.9 24.1 1.2e-06 29.0 12.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603408|ref|YP_503586.1| - 7.5e-07 29.2 12.2 1.8e-06 27.9 12.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603408|ref|YP_503586.1| - 1.2e-06 28.6 21.1 5.1e-06 26.5 11.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603408|ref|YP_503586.1| - 3.1e-06 28.0 8.5 0.0058 17.5 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_31 PF13614.6 gi|88603408|ref|YP_503586.1| - 1e-05 25.5 1.3 0.0032 17.4 0.1 2.3 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|88603408|ref|YP_503586.1| - 1.7e-05 24.4 0.1 0.09 12.2 0.0 2.3 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|88603408|ref|YP_503586.1| - 0.0011 18.2 0.1 0.0022 17.2 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_4 PF12800.7 gi|88603408|ref|YP_503586.1| - 0.0014 19.0 13.5 0.011 16.2 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603408|ref|YP_503586.1| - 0.0026 18.6 7.7 0.33 11.8 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603408|ref|YP_503586.1| - 0.0088 16.6 11.7 0.25 11.9 1.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain GTP_EFTU PF00009.27 gi|88603408|ref|YP_503586.1| - 0.0089 15.6 0.7 0.056 13.0 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_8 PF13183.6 gi|88603408|ref|YP_503586.1| - 0.01 16.3 14.1 2.5 8.6 14.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|88603408|ref|YP_503586.1| - 0.012 16.0 0.2 0.17 12.2 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|88603408|ref|YP_503586.1| - 0.018 15.0 1.0 0.05 13.5 0.0 2.1 3 0 0 3 3 2 0 NACHT domain Fer4_15 PF13459.6 gi|88603408|ref|YP_503586.1| - 0.02 15.6 7.9 0.2 12.4 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|88603408|ref|YP_503586.1| - 0.028 15.3 16.5 0.31 12.1 4.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain RuvB_N PF05496.12 gi|88603408|ref|YP_503586.1| - 0.063 13.0 0.2 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|88603408|ref|YP_503586.1| - 0.12 11.8 0.2 0.36 10.2 0.2 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|88603408|ref|YP_503586.1| - 0.17 11.4 0.4 0.45 10.1 0.2 1.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|88603408|ref|YP_503586.1| - 0.18 11.0 0.1 0.26 10.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_26 PF13500.6 gi|88603408|ref|YP_503586.1| - 0.2 11.5 3.1 2.5 7.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|88603408|ref|YP_503586.1| - 0.21 10.7 1.6 5.2 6.2 0.3 2.3 2 0 0 2 2 2 0 NB-ARC domain Fer4_13 PF13370.6 gi|88603408|ref|YP_503586.1| - 1.2 9.7 14.0 0.81 10.3 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|88603409|ref|YP_503587.1| - 2.5e-16 59.9 0.0 3.1e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|88603409|ref|YP_503587.1| - 2.6e-13 50.0 0.7 9.5e-07 28.5 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|88603409|ref|YP_503587.1| - 1.1e-10 40.9 9.4 2.3e-05 24.0 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603409|ref|YP_503587.1| - 1.1e-07 31.6 9.7 1.2e-05 25.2 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603409|ref|YP_503587.1| - 1.3e-06 29.2 5.1 0.00013 22.8 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|88603409|ref|YP_503587.1| - 1.3e-05 25.2 4.1 3.5e-05 23.9 4.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|88603409|ref|YP_503587.1| - 3e-05 23.3 1.1 5.5e-05 22.5 1.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|88603409|ref|YP_503587.1| - 3.4e-05 23.4 0.0 0.21 11.0 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_7 PF12838.7 gi|88603409|ref|YP_503587.1| - 5e-05 23.8 10.5 0.00024 21.6 10.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603409|ref|YP_503587.1| - 7e-05 22.9 10.5 0.00055 20.0 10.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|88603409|ref|YP_503587.1| - 8.4e-05 22.6 0.2 0.00054 19.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain Fer4_8 PF13183.6 gi|88603409|ref|YP_503587.1| - 0.0014 19.0 5.0 0.44 11.0 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603409|ref|YP_503587.1| - 0.016 15.3 15.5 0.035 14.2 11.9 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain CLP1_P PF16575.5 gi|88603409|ref|YP_503587.1| - 0.043 13.6 0.1 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|88603409|ref|YP_503587.1| - 0.094 12.2 0.0 5.9 6.3 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Fer4_2 PF12797.7 gi|88603409|ref|YP_503587.1| - 0.12 12.6 15.5 0.21 11.7 2.1 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|88603409|ref|YP_503587.1| - 0.21 12.1 8.5 1 10.0 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I VirC1 PF07015.11 gi|88603409|ref|YP_503587.1| - 0.23 10.7 0.0 0.35 10.1 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein Fer4_17 PF13534.6 gi|88603409|ref|YP_503587.1| - 0.33 11.5 14.7 0.56 10.8 3.0 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88603409|ref|YP_503587.1| - 0.97 10.3 7.7 5.9 7.8 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603409|ref|YP_503587.1| - 4.6 8.4 27.2 0.43 11.6 5.1 3.3 4 0 0 4 4 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.17 gi|88603410|ref|YP_503588.1| - 1e-21 77.0 0.0 1.2e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.9 gi|88603411|ref|YP_503589.1| - 5e-96 320.9 0.0 5.7e-96 320.7 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|88603411|ref|YP_503589.1| - 1.9e-14 53.8 0.0 1.1e-13 51.4 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|88603411|ref|YP_503589.1| - 3.5e-10 40.1 0.9 2.2e-09 37.5 0.9 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|88603411|ref|YP_503589.1| - 2.8e-08 33.4 0.0 4.1e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|88603411|ref|YP_503589.1| - 2.4e-06 27.0 0.0 1.2e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|88603411|ref|YP_503589.1| - 8.3e-05 22.1 0.0 0.00024 20.7 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|88603411|ref|YP_503589.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|88603411|ref|YP_503589.1| - 0.00076 19.3 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|88603411|ref|YP_503589.1| - 0.0099 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.6 gi|88603411|ref|YP_503589.1| - 0.016 15.1 0.1 0.16 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|88603411|ref|YP_503589.1| - 0.019 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|88603411|ref|YP_503589.1| - 0.02 13.9 0.2 0.032 13.2 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|88603411|ref|YP_503589.1| - 0.021 14.0 0.1 0.033 13.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.12 gi|88603411|ref|YP_503589.1| - 0.026 14.3 0.1 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain CBP_BcsQ PF06564.12 gi|88603411|ref|YP_503589.1| - 0.063 12.7 0.2 0.41 10.1 0.2 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|88603411|ref|YP_503589.1| - 0.12 12.9 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|88603411|ref|YP_503589.1| - 0.12 12.3 0.5 0.22 11.4 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase Desulfoferrod_N PF06397.12 gi|88603411|ref|YP_503589.1| - 0.18 11.4 0.4 0.31 10.7 0.4 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain NTPase_1 PF03266.15 gi|88603411|ref|YP_503589.1| - 0.22 11.4 0.3 0.39 10.6 0.3 1.3 1 0 0 1 1 1 0 NTPase DUF2124 PF09897.9 gi|88603412|ref|YP_503590.1| - 7.9e-53 178.1 0.0 9e-53 178.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Radical_SAM PF04055.21 gi|88603413|ref|YP_503591.1| - 5.5e-25 88.7 0.1 1.3e-24 87.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|88603413|ref|YP_503591.1| - 1.4e-06 28.4 0.0 1.8e-05 24.7 0.1 2.7 2 1 0 2 2 2 1 B12 binding domain Msg2_C PF12373.8 gi|88603413|ref|YP_503591.1| - 0.21 11.0 3.3 0.36 10.3 0.0 2.5 3 0 0 3 3 3 0 Major surface glycoprotein 2 C terminal MtrE PF04206.12 gi|88603414|ref|YP_503592.1| - 2.3e-131 437.1 12.1 2.7e-131 436.8 12.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MtrD PF04207.12 gi|88603415|ref|YP_503593.1| - 5.2e-94 314.0 24.2 7.6e-94 313.5 24.2 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.13 gi|88603416|ref|YP_503594.1| - 2e-70 236.9 36.8 4e-69 232.6 36.8 2.0 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.12 gi|88603417|ref|YP_503595.1| - 1.3e-27 96.0 0.0 1.5e-27 95.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.14 gi|88603418|ref|YP_503596.1| - 7.3e-86 286.2 1.2 1e-85 285.7 1.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|88603418|ref|YP_503596.1| - 0.66 9.4 4.2 4.2 6.8 4.2 2.2 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|88603419|ref|YP_503597.1| - 2.2e-19 68.6 3.3 2.5e-19 68.4 3.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) SPC12 PF06645.13 gi|88603419|ref|YP_503597.1| - 0.017 15.2 0.6 0.022 14.9 0.6 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Rossmann-like PF10727.9 gi|88603419|ref|YP_503597.1| - 0.042 13.7 0.1 0.045 13.6 0.1 1.2 1 0 0 1 1 1 0 Rossmann-like domain MtrA PF04208.14 gi|88603420|ref|YP_503598.1| - 1.5e-81 272.2 2.1 1.9e-81 271.8 2.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.13 gi|88603420|ref|YP_503598.1| - 1.5e-21 76.0 1.5 2.1e-21 75.5 0.3 1.8 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrH PF02007.18 gi|88603421|ref|YP_503599.1| - 2.4e-94 315.8 0.0 3.5e-94 315.3 0.0 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit HTH_23 PF13384.6 gi|88603421|ref|YP_503599.1| - 0.22 11.4 0.7 6.2 6.8 0.4 2.4 2 0 0 2 2 2 0 Homeodomain-like domain tRNA-synt_1e PF01406.19 gi|88603422|ref|YP_503600.1| - 2.2e-110 368.8 0.0 2.9e-110 368.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|88603422|ref|YP_503600.1| - 2.8e-21 75.7 0.2 1.7e-09 37.0 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|88603422|ref|YP_503600.1| - 2.2e-11 42.8 0.0 6.9e-08 31.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|88603422|ref|YP_503600.1| - 7.2e-07 28.4 0.0 3.1e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|88603422|ref|YP_503600.1| - 5.6e-06 26.7 2.7 1.9e-05 25.0 0.6 2.8 2 1 1 3 3 3 1 DALR domain tRNA-synt_1b PF00579.25 gi|88603422|ref|YP_503600.1| - 0.029 13.7 0.0 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Mut7-C PF01927.16 gi|88603422|ref|YP_503600.1| - 0.22 11.6 0.0 0.39 10.8 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain HTH_24 PF13412.6 gi|88603425|ref|YP_503603.1| - 0.00054 19.5 0.0 0.00078 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|88603425|ref|YP_503603.1| - 0.007 16.0 0.1 0.0097 15.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|88603425|ref|YP_503603.1| - 0.023 15.2 0.0 0.026 15.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|88603425|ref|YP_503603.1| - 0.034 14.0 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|88603425|ref|YP_503603.1| - 0.077 13.0 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 HTH domain RNA_pol_Rpc34 PF05158.12 gi|88603425|ref|YP_503603.1| - 0.09 12.1 0.0 0.1 11.9 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit SepSecS PF05889.13 gi|88603426|ref|YP_503604.1| - 4.5e-21 75.0 0.0 7.8e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|88603426|ref|YP_503604.1| - 1.6e-17 63.5 0.0 2.4e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|88603426|ref|YP_503604.1| - 1.2e-05 24.7 0.3 2.1e-05 24.0 0.3 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|88603426|ref|YP_503604.1| - 3.7e-05 23.2 0.2 5.4e-05 22.7 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|88603426|ref|YP_503604.1| - 0.0016 17.7 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|88603426|ref|YP_503604.1| - 0.016 13.8 0.0 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cys_Met_Meta_PP PF01053.20 gi|88603427|ref|YP_503605.1| - 5.6e-143 476.1 0.0 6.4e-143 475.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|88603427|ref|YP_503605.1| - 2.7e-12 46.7 0.2 4e-12 46.1 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|88603427|ref|YP_503605.1| - 2e-05 24.0 0.0 2.8e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|88603427|ref|YP_503605.1| - 4.1e-05 22.7 0.1 7.5e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|88603427|ref|YP_503605.1| - 0.0013 18.1 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|88603427|ref|YP_503605.1| - 0.0057 15.5 0.0 0.0082 15.0 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.11 gi|88603427|ref|YP_503605.1| - 0.051 12.1 0.2 1.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Methionine gamma-lyase PALP PF00291.25 gi|88603428|ref|YP_503606.1| - 3.6e-66 223.6 0.1 4e-66 223.4 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Abhydrolase_3 PF07859.13 gi|88603428|ref|YP_503606.1| - 0.012 15.5 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold LDcluster4 PF18306.1 gi|88603428|ref|YP_503606.1| - 0.036 13.7 0.2 1.7 8.2 0.1 2.4 2 0 0 2 2 2 0 SLOG cluster4 family Thi4 PF01946.17 gi|88603428|ref|YP_503606.1| - 0.04 13.2 0.3 0.24 10.6 0.2 2.2 2 1 1 3 3 3 0 Thi4 family TFIIB PF00382.19 gi|88603428|ref|YP_503606.1| - 0.044 13.8 0.0 0.092 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcription factor TFIIB repeat ThiF PF00899.21 gi|88603429|ref|YP_503607.1| - 9.2e-61 205.3 0.0 1.2e-60 204.9 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|88603429|ref|YP_503607.1| - 0.013 15.7 0.1 0.03 14.6 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|88603429|ref|YP_503607.1| - 0.024 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|88603429|ref|YP_503607.1| - 0.028 14.0 0.1 0.04 13.5 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiI PF02568.14 gi|88603430|ref|YP_503608.1| - 8.7e-58 195.2 0.0 1.2e-57 194.7 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|88603430|ref|YP_503608.1| - 4e-14 52.9 0.0 8.1e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|88603430|ref|YP_503608.1| - 0.00037 20.1 0.0 0.0072 15.8 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|88603430|ref|YP_503608.1| - 0.079 11.7 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|88603430|ref|YP_503608.1| - 0.1 12.3 0.0 1.5 8.6 0.0 2.1 1 1 0 1 1 1 0 PP-loop family CHASE6_C PF17150.4 gi|88603430|ref|YP_503608.1| - 0.15 12.7 0.0 0.41 11.3 0.0 1.7 1 0 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain NAD_synthase PF02540.17 gi|88603431|ref|YP_503609.1| - 4.1e-05 22.8 0.0 0.00012 21.3 0.0 1.7 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|88603431|ref|YP_503609.1| - 0.00038 20.3 0.0 0.0067 16.2 0.0 2.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|88603431|ref|YP_503609.1| - 0.031 13.1 0.0 3.5 6.3 0.0 2.3 2 0 0 2 2 2 0 tRNA methyl transferase Rubredoxin PF00301.20 gi|88603432|ref|YP_503610.1| - 6.4e-25 86.9 3.7 7e-25 86.8 3.7 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|88603432|ref|YP_503610.1| - 0.00032 20.7 0.2 0.00044 20.3 0.2 1.3 1 1 0 1 1 1 1 PHD-finger zf-Sec23_Sec24 PF04810.15 gi|88603432|ref|YP_503610.1| - 0.043 13.9 0.0 0.72 10.0 0.0 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.10 gi|88603432|ref|YP_503610.1| - 0.05 13.7 1.5 0.44 10.7 1.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|88603432|ref|YP_503610.1| - 0.12 12.5 3.4 0.34 11.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-piccolo PF05715.13 gi|88603432|ref|YP_503610.1| - 0.15 12.3 1.7 2.8 8.2 0.4 2.0 1 1 1 2 2 2 0 Piccolo Zn-finger zf-H2C2_2 PF13465.6 gi|88603432|ref|YP_503610.1| - 0.17 12.3 2.1 1.8 9.1 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-RanBP PF00641.18 gi|88603432|ref|YP_503610.1| - 0.28 10.6 2.2 2.3 7.6 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2_4 PF13894.6 gi|88603432|ref|YP_503610.1| - 0.31 12.0 1.8 6.8 7.8 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|88603432|ref|YP_503610.1| - 1.2 8.9 6.2 3 7.6 1.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Cupin_2 PF07883.11 gi|88603434|ref|YP_503612.1| - 1.4e-11 43.9 0.0 1.8e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|88603434|ref|YP_503612.1| - 2.2e-07 30.8 0.0 2.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|88603434|ref|YP_503612.1| - 1.6e-05 24.5 0.1 2.5e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.14 gi|88603434|ref|YP_503612.1| - 0.0032 17.7 0.0 0.0041 17.3 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family Cupin_6 PF12852.7 gi|88603434|ref|YP_503612.1| - 0.0047 16.7 0.0 0.0056 16.4 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.22 gi|88603434|ref|YP_503612.1| - 0.017 14.7 0.0 0.023 14.3 0.0 1.4 1 1 0 1 1 1 0 Cupin Asp_Arg_Hydrox PF05118.15 gi|88603434|ref|YP_503612.1| - 0.019 14.8 0.0 0.034 14.0 0.0 1.3 1 1 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase 2OG-FeII_Oxy_5 PF13759.6 gi|88603434|ref|YP_503612.1| - 0.031 14.7 0.0 0.82 10.1 0.0 2.0 1 1 0 2 2 2 0 Putative 2OG-Fe(II) oxygenase EutQ PF06249.12 gi|88603434|ref|YP_503612.1| - 0.039 13.7 0.1 0.06 13.1 0.1 1.4 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ AraC_binding_2 PF14525.6 gi|88603434|ref|YP_503612.1| - 0.14 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Prismane PF03063.20 gi|88603435|ref|YP_503613.1| - 2.6e-169 564.2 0.7 2.9e-169 564.0 0.7 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rap1_C PF11626.8 gi|88603435|ref|YP_503613.1| - 0.051 13.7 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 TRF2-interacting telomeric protein/Rap1 - C terminal domain HxlR PF01638.17 gi|88603436|ref|YP_503614.1| - 1.8e-23 82.2 0.3 2.3e-23 81.9 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|88603436|ref|YP_503614.1| - 0.00048 20.0 0.0 0.0006 19.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|88603436|ref|YP_503614.1| - 0.0053 16.8 0.2 0.038 14.1 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain DUF2513 PF10711.9 gi|88603436|ref|YP_503614.1| - 0.0097 16.2 0.2 0.013 15.8 0.2 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) DUF4423 PF14394.6 gi|88603436|ref|YP_503614.1| - 0.016 14.9 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_34 PF13601.6 gi|88603436|ref|YP_503614.1| - 0.028 14.6 0.1 0.038 14.2 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.12 gi|88603436|ref|YP_503614.1| - 0.034 12.5 0.1 0.038 12.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|88603436|ref|YP_503614.1| - 0.04 13.9 0.0 0.12 12.4 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.22 gi|88603436|ref|YP_503614.1| - 0.057 13.3 0.1 0.092 12.7 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|88603436|ref|YP_503614.1| - 0.058 13.0 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|88603436|ref|YP_503614.1| - 0.083 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|88603436|ref|YP_503614.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Ribosomal_S27e PF01667.17 gi|88603437|ref|YP_503615.1| - 3.7e-05 23.3 1.9 5.9e-05 22.7 1.9 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.11 gi|88603437|ref|YP_503615.1| - 7.7e-05 22.5 1.3 0.00011 22.0 1.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|88603437|ref|YP_503615.1| - 0.0006 19.5 1.7 0.0006 19.5 1.7 2.0 2 1 0 2 2 2 1 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|88603437|ref|YP_503615.1| - 0.0009 18.9 0.9 0.0019 17.9 0.9 1.5 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|88603437|ref|YP_503615.1| - 0.0081 15.8 5.1 0.24 11.2 5.1 2.5 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|88603437|ref|YP_503615.1| - 0.0099 16.0 2.4 0.027 14.6 2.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain zf-ACC PF17848.1 gi|88603437|ref|YP_503615.1| - 0.015 15.4 4.4 2.5 8.2 1.7 2.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|88603437|ref|YP_503615.1| - 0.019 14.9 2.4 0.24 11.4 2.4 2.3 1 1 0 1 1 1 0 Nudix N-terminal zf_UBZ PF18439.1 gi|88603437|ref|YP_503615.1| - 0.021 14.4 1.9 1.8 8.2 0.3 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF35_N PF12172.8 gi|88603437|ref|YP_503615.1| - 0.022 14.6 0.6 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-tcix PF14952.6 gi|88603437|ref|YP_503615.1| - 0.023 14.3 0.3 0.023 14.3 0.3 2.4 2 1 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TF_Zn_Ribbon PF08271.12 gi|88603437|ref|YP_503615.1| - 0.032 13.7 4.8 0.12 12.0 4.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding IBR PF01485.21 gi|88603437|ref|YP_503615.1| - 0.041 14.1 1.8 0.041 14.1 1.8 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf-dskA_traR PF01258.17 gi|88603437|ref|YP_503615.1| - 0.063 13.2 2.9 0.76 9.8 0.4 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.6 gi|88603437|ref|YP_503615.1| - 0.064 13.6 8.2 0.14 12.5 8.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF3126 PF11324.8 gi|88603437|ref|YP_503615.1| - 0.077 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3126) zinc-ribbons_6 PF07191.12 gi|88603437|ref|YP_503615.1| - 0.13 12.2 6.2 0.23 11.5 6.2 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2_3 PF13878.6 gi|88603437|ref|YP_503615.1| - 0.48 10.3 4.5 9.8 6.1 0.3 2.6 3 0 0 3 3 2 0 zinc-finger of acetyl-transferase ESCO Desulfoferrod_N PF06397.12 gi|88603437|ref|YP_503615.1| - 0.62 9.7 0.2 0.62 9.7 0.2 2.6 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-Mss51 PF13824.6 gi|88603437|ref|YP_503615.1| - 1.4 9.1 5.6 3.7 7.7 4.0 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|88603437|ref|YP_503615.1| - 2.9 7.4 9.5 1.2 8.6 4.2 2.5 2 1 0 2 2 1 0 zinc-ribbon domain YhfH PF14149.6 gi|88603437|ref|YP_503615.1| - 5.8 7.0 14.1 7.5 6.6 7.9 2.9 1 1 1 2 2 2 0 YhfH-like protein Fer4 PF00037.27 gi|88603438|ref|YP_503616.1| - 6.3e-11 41.6 11.2 3.1e-07 29.9 3.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603438|ref|YP_503616.1| - 3.1e-07 30.4 3.3 8.5e-07 29.0 3.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603438|ref|YP_503616.1| - 4.8e-07 30.3 5.6 0.00085 19.9 1.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603438|ref|YP_503616.1| - 7.9e-07 28.9 11.5 4.4e-06 26.5 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603438|ref|YP_503616.1| - 1.1e-06 29.5 5.2 0.019 15.9 1.8 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|88603438|ref|YP_503616.1| - 3.5e-06 27.0 5.4 3.5e-06 27.0 5.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603438|ref|YP_503616.1| - 5.6e-06 26.4 4.2 5.6e-06 26.4 4.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603438|ref|YP_503616.1| - 0.00025 21.5 1.3 0.035 14.6 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603438|ref|YP_503616.1| - 0.00084 20.0 10.8 0.01 16.5 7.6 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|88603438|ref|YP_503616.1| - 0.0012 18.9 2.4 0.0012 18.9 2.4 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603438|ref|YP_503616.1| - 0.003 18.0 1.9 0.13 12.7 0.5 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|88603438|ref|YP_503616.1| - 0.0097 16.0 3.4 0.28 11.3 0.3 2.8 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|88603438|ref|YP_503616.1| - 0.026 15.0 3.1 0.026 15.0 3.1 3.0 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603438|ref|YP_503616.1| - 0.068 14.0 5.7 0.13 13.1 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603438|ref|YP_503616.1| - 0.66 11.0 15.8 2.2 9.4 5.5 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain HTH_24 PF13412.6 gi|88603439|ref|YP_503617.1| - 2.8e-12 46.0 1.6 6.7e-08 32.0 0.2 2.6 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|88603439|ref|YP_503617.1| - 4.6e-07 29.6 0.1 0.00028 20.7 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|88603439|ref|YP_503617.1| - 0.0017 18.4 0.0 0.17 11.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88603439|ref|YP_503617.1| - 0.0021 17.9 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family RPA_C PF08784.11 gi|88603439|ref|YP_503617.1| - 0.0044 17.7 0.5 0.45 11.2 0.0 2.8 2 1 0 2 2 2 1 Replication protein A C terminal MerR_1 PF13411.6 gi|88603439|ref|YP_503617.1| - 0.0054 16.8 0.1 0.54 10.4 0.0 2.7 2 1 0 2 2 2 1 MerR HTH family regulatory protein MarR PF01047.22 gi|88603439|ref|YP_503617.1| - 0.0081 16.1 0.0 0.13 12.2 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 gi|88603439|ref|YP_503617.1| - 0.03 14.7 0.0 0.49 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|88603439|ref|YP_503617.1| - 0.056 13.3 0.1 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|88603439|ref|YP_503617.1| - 0.086 12.5 0.0 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|88603439|ref|YP_503617.1| - 0.14 12.1 0.0 1 9.4 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|88603439|ref|YP_503617.1| - 0.18 11.9 0.0 0.45 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4920 PF16267.5 gi|88603440|ref|YP_503618.1| - 0.00038 20.4 0.1 0.00074 19.4 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4920) Slp PF03843.13 gi|88603440|ref|YP_503618.1| - 0.0051 16.2 0.1 0.025 14.0 0.0 1.8 2 0 0 2 2 2 1 Outer membrane lipoprotein Slp family PRP8_domainIV PF12134.8 gi|88603440|ref|YP_503618.1| - 0.083 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 PRP8 domain IV core MacB_PCD PF12704.7 gi|88603441|ref|YP_503619.1| - 1.8e-18 67.6 2.8 1.5e-17 64.6 0.0 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|88603441|ref|YP_503619.1| - 1.4e-13 51.1 1.9 1.4e-13 51.1 1.9 3.1 3 0 0 3 3 3 1 FtsX-like permease family EI24 PF07264.11 gi|88603441|ref|YP_503619.1| - 0.5 10.6 5.2 1.4 9.1 5.2 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) ABC_tran PF00005.27 gi|88603442|ref|YP_503620.1| - 1.9e-32 112.6 0.0 2.5e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603442|ref|YP_503620.1| - 8.5e-07 29.1 3.7 0.0051 16.7 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603442|ref|YP_503620.1| - 5.4e-06 26.0 0.1 0.025 14.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|88603442|ref|YP_503620.1| - 3.5e-05 24.3 0.0 4.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|88603442|ref|YP_503620.1| - 0.0017 18.1 0.0 0.54 10.0 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|88603442|ref|YP_503620.1| - 0.0055 17.0 0.3 0.04 14.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88603442|ref|YP_503620.1| - 0.0094 15.7 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|88603442|ref|YP_503620.1| - 0.0094 15.9 0.1 0.024 14.6 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|88603442|ref|YP_503620.1| - 0.02 15.1 0.5 0.34 11.1 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|88603442|ref|YP_503620.1| - 0.023 15.0 0.1 0.47 10.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|88603442|ref|YP_503620.1| - 0.04 13.0 0.0 0.073 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.6 gi|88603442|ref|YP_503620.1| - 0.044 12.4 0.0 2.5 6.7 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|88603442|ref|YP_503620.1| - 0.045 13.4 0.1 3.4 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|88603442|ref|YP_503620.1| - 0.073 13.6 0.1 0.15 12.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|88603442|ref|YP_503620.1| - 0.11 11.9 0.1 0.24 10.8 0.0 1.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Zeta_toxin PF06414.12 gi|88603442|ref|YP_503620.1| - 0.13 11.5 0.0 0.47 9.7 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|88603442|ref|YP_503620.1| - 0.14 11.7 0.1 0.57 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|88603442|ref|YP_503620.1| - 0.19 11.6 0.2 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Radical_SAM PF04055.21 gi|88603443|ref|YP_503621.1| - 2.8e-10 40.8 0.0 4e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily TssR PF17643.1 gi|88603443|ref|YP_503621.1| - 0.14 10.0 0.0 0.2 9.6 0.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssR Thioredoxin PF00085.20 gi|88603444|ref|YP_503622.1| - 0.0057 16.6 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 gi|88603444|ref|YP_503622.1| - 0.025 14.3 0.0 0.03 14.0 0.0 1.1 1 0 0 1 1 1 0 Redoxin Glutaredoxin PF00462.24 gi|88603444|ref|YP_503622.1| - 0.034 14.4 0.0 0.048 13.9 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin CBM_3 PF00942.18 gi|88603444|ref|YP_503622.1| - 0.042 14.3 0.2 0.079 13.4 0.2 1.4 1 0 0 1 1 1 0 Cellulose binding domain Thioredoxin_9 PF14595.6 gi|88603444|ref|YP_503622.1| - 0.096 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin PsiE PF06146.12 gi|88603445|ref|YP_503623.1| - 0.0013 19.1 5.7 0.0013 19.1 5.7 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E COX14 PF14880.6 gi|88603445|ref|YP_503623.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Tenui_NCP PF04876.12 gi|88603445|ref|YP_503623.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Tenuivirus major non-capsid protein DUF2614 PF11023.8 gi|88603445|ref|YP_503623.1| - 2.1 8.5 5.5 0.59 10.3 0.7 2.1 1 1 1 2 2 2 0 Zinc-ribbon containing domain UPF0126 PF03458.13 gi|88603446|ref|YP_503624.1| - 2.9e-36 123.2 17.4 1.6e-18 66.3 5.5 2.3 2 0 0 2 2 2 2 UPF0126 domain MtrE PF04206.12 gi|88603446|ref|YP_503624.1| - 0.71 9.1 12.0 0.37 10.1 3.2 2.3 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit E Abhydrolase_1 PF00561.20 gi|88603447|ref|YP_503625.1| - 5.3e-35 121.3 0.1 6.5e-35 121.0 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|88603447|ref|YP_503625.1| - 2.8e-26 91.7 3.8 5.3e-13 49.2 0.4 2.8 2 0 0 2 2 2 2 CBS domain Abhydrolase_6 PF12697.7 gi|88603447|ref|YP_503625.1| - 0.0012 19.5 0.0 0.0019 18.9 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|88603447|ref|YP_503625.1| - 0.0013 18.5 0.1 0.0021 17.8 0.1 1.3 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|88603447|ref|YP_503625.1| - 0.002 17.5 0.0 0.0076 15.5 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 CAAD PF14159.6 gi|88603447|ref|YP_503625.1| - 0.029 14.2 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase NadA PF02445.16 gi|88603448|ref|YP_503626.1| - 6.3e-106 353.9 0.1 7.6e-106 353.6 0.1 1.1 1 0 0 1 1 1 1 Quinolinate synthetase A protein Aminotran_5 PF00266.19 gi|88603449|ref|YP_503627.1| - 1.1e-117 393.1 0.0 1.2e-117 393.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|88603449|ref|YP_503627.1| - 2.7e-06 27.0 0.0 3.9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|88603449|ref|YP_503627.1| - 1e-05 25.0 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88603449|ref|YP_503627.1| - 0.00065 18.3 0.0 0.0015 17.2 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|88603449|ref|YP_503627.1| - 0.0024 17.1 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II FdhD-NarQ PF02634.15 gi|88603450|ref|YP_503628.1| - 3.4e-66 223.3 0.1 3.9e-66 223.1 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DAHP_snth_FXD PF18152.1 gi|88603450|ref|YP_503628.1| - 0.043 13.7 0.6 2.5 8.0 0.0 2.8 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain DUF982 PF06169.12 gi|88603450|ref|YP_503628.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF982) NMT1_2 PF13379.6 gi|88603451|ref|YP_503629.1| - 4.4e-36 124.9 0.1 6.5e-36 124.3 0.1 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|88603451|ref|YP_503629.1| - 1.2e-23 84.2 0.0 1.6e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|88603451|ref|YP_503629.1| - 1.9e-09 37.5 0.0 2.6e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|88603451|ref|YP_503629.1| - 6.6e-07 29.0 0.0 2.6e-06 27.1 0.0 1.8 1 1 1 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 gi|88603451|ref|YP_503629.1| - 3.4e-05 23.4 0.0 0.00021 20.8 0.0 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 DctP PF03480.13 gi|88603451|ref|YP_503629.1| - 0.15 11.4 0.0 0.46 9.8 0.0 1.8 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 ThiS PF02597.20 gi|88603453|ref|YP_503631.1| - 9.7e-10 39.0 0.1 1.2e-09 38.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family MoaE PF02391.17 gi|88603454|ref|YP_503632.1| - 1.9e-28 99.0 0.0 2.2e-28 98.8 0.0 1.0 1 0 0 1 1 1 1 MoaE protein Aminotran_5 PF00266.19 gi|88603455|ref|YP_503633.1| - 4.2e-72 243.1 0.0 4.8e-72 243.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|88603455|ref|YP_503633.1| - 1.6e-05 24.4 0.0 3e-05 23.5 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|88603455|ref|YP_503633.1| - 0.07 11.6 0.1 0.11 11.1 0.1 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme RNA_binding PF01877.17 gi|88603456|ref|YP_503634.1| - 0.087 13.1 0.0 0.14 12.4 0.0 1.4 1 1 0 1 1 1 0 RNA binding FeS_assembly_P PF01883.19 gi|88603457|ref|YP_503635.1| - 9.6e-17 60.9 0.3 2.1e-16 59.8 0.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Hexapep PF00132.24 gi|88603457|ref|YP_503635.1| - 2.5e-13 49.2 15.4 5.9e-08 32.1 2.6 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|88603457|ref|YP_503635.1| - 1.6e-05 25.2 0.0 3.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|88603457|ref|YP_503635.1| - 0.00058 19.6 18.7 0.0088 15.8 3.1 3.3 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase EndIII_4Fe-2S PF10576.9 gi|88603457|ref|YP_503635.1| - 0.21 12.0 1.0 0.32 11.4 1.0 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III ATP_bind_3 PF01171.20 gi|88603458|ref|YP_503636.1| - 7.9e-19 68.1 0.0 1.2e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|88603458|ref|YP_503636.1| - 0.00056 18.8 0.0 0.00077 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|88603458|ref|YP_503636.1| - 0.0028 17.7 0.0 0.0068 16.5 0.0 1.6 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|88603458|ref|YP_503636.1| - 0.0038 16.8 0.1 0.24 10.9 0.0 2.9 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC zn-ribbon_14 PF16503.5 gi|88603458|ref|YP_503636.1| - 0.028 13.9 1.1 0.028 13.9 1.1 3.0 3 0 0 3 3 3 0 Zinc-ribbon Asn_synthase PF00733.21 gi|88603458|ref|YP_503636.1| - 0.049 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Asparagine synthase YyzF PF14116.6 gi|88603458|ref|YP_503636.1| - 0.092 12.8 2.8 1.2 9.2 0.3 3.1 3 0 0 3 3 3 0 YyzF-like protein RecR PF02132.15 gi|88603458|ref|YP_503636.1| - 0.75 9.4 8.5 0.63 9.7 0.5 3.5 3 0 0 3 3 3 0 RecR protein C1_2 PF03107.16 gi|88603458|ref|YP_503636.1| - 4 7.9 6.4 2.6 8.4 0.6 3.0 3 0 0 3 3 3 0 C1 domain Aminotran_5 PF00266.19 gi|88603459|ref|YP_503637.1| - 6.8e-87 291.8 0.0 9.4e-87 291.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|88603459|ref|YP_503637.1| - 5.4e-09 35.8 0.0 6.9e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88603459|ref|YP_503637.1| - 0.0022 16.6 0.0 0.0032 16.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|88603459|ref|YP_503637.1| - 0.006 15.9 0.3 0.009 15.4 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 gi|88603459|ref|YP_503637.1| - 0.047 12.4 0.1 0.074 11.8 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.16 gi|88603460|ref|YP_503638.1| - 1.1e-48 164.6 0.0 1.2e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.17 gi|88603460|ref|YP_503638.1| - 0.013 15.6 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain TSCPD PF12637.7 gi|88603460|ref|YP_503638.1| - 0.07 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 TSCPD domain Phos_pyr_kin PF08543.12 gi|88603460|ref|YP_503638.1| - 0.078 12.3 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF448 PF04296.13 gi|88603460|ref|YP_503638.1| - 0.2 11.5 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF448) AAA_14 PF13173.6 gi|88603461|ref|YP_503639.1| - 1.2e-34 119.2 0.0 2.1e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88603461|ref|YP_503639.1| - 5.7e-15 55.5 0.1 1.1e-14 54.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Sec8_exocyst PF04048.14 gi|88603461|ref|YP_503639.1| - 9.8e-05 22.3 0.0 0.00027 20.8 0.0 1.7 2 0 0 2 2 2 1 Sec8 exocyst complex component specific domain ATPase_2 PF01637.18 gi|88603461|ref|YP_503639.1| - 0.0003 20.8 0.2 0.013 15.5 0.0 2.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea HTH_11 PF08279.12 gi|88603461|ref|YP_503639.1| - 0.00041 20.2 0.0 0.001 18.9 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|88603461|ref|YP_503639.1| - 0.094 12.6 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MFS_1 PF07690.16 gi|88603462|ref|YP_503640.1| - 3.8e-58 197.1 47.3 3.8e-58 197.1 47.3 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|88603462|ref|YP_503640.1| - 1.3e-08 34.1 16.1 1.3e-08 34.1 16.1 3.1 2 1 0 2 2 2 1 Sugar (and other) transporter PUCC PF03209.15 gi|88603462|ref|YP_503640.1| - 2.3e-06 26.9 21.1 0.00022 20.3 3.9 2.3 2 0 0 2 2 2 2 PUCC protein MFS_3 PF05977.13 gi|88603462|ref|YP_503640.1| - 5.9e-06 25.0 4.2 5.9e-06 25.0 4.2 2.2 2 0 0 2 2 2 1 Transmembrane secretion effector SepZ PF06066.11 gi|88603462|ref|YP_503640.1| - 4.1 7.7 6.2 0.71 10.1 0.3 2.6 3 0 0 3 3 3 0 SepZ HK PF02110.15 gi|88603463|ref|YP_503641.1| - 6.3e-82 274.7 2.5 7.2e-82 274.5 2.5 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|88603463|ref|YP_503641.1| - 1.2e-05 24.9 0.3 1.5e-05 24.6 0.3 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|88603463|ref|YP_503641.1| - 0.00038 19.9 0.2 0.00074 19.0 0.2 1.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase NikR_C PF08753.11 gi|88603463|ref|YP_503641.1| - 0.04 14.1 0.1 0.086 13.0 0.1 1.5 1 0 0 1 1 1 0 NikR C terminal nickel binding domain DUF234 PF03008.14 gi|88603464|ref|YP_503642.1| - 1.9e-28 98.8 0.2 5.4e-28 97.3 0.0 1.9 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|88603464|ref|YP_503642.1| - 3.6e-21 76.2 0.1 6.8e-20 72.0 0.1 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|88603464|ref|YP_503642.1| - 2.8e-07 30.6 0.3 1.3e-06 28.5 0.1 2.3 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|88603464|ref|YP_503642.1| - 0.0014 18.9 0.0 0.003 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88603464|ref|YP_503642.1| - 0.0056 17.1 0.0 0.016 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain UPF0102 PF02021.17 gi|88603464|ref|YP_503642.1| - 0.0073 16.5 0.2 0.02 15.1 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 HTH_24 PF13412.6 gi|88603464|ref|YP_503642.1| - 0.028 14.0 0.3 0.13 11.8 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.11 gi|88603464|ref|YP_503642.1| - 0.044 13.8 0.5 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_5 PF01022.20 gi|88603464|ref|YP_503642.1| - 0.051 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|88603464|ref|YP_503642.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Aminotran_5 PF00266.19 gi|88603465|ref|YP_503643.1| - 4.7e-119 397.7 0.0 7e-119 397.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V PAPS_reduct PF01507.19 gi|88603465|ref|YP_503643.1| - 3.9e-35 121.4 0.0 7e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Aminotran_1_2 PF00155.21 gi|88603465|ref|YP_503643.1| - 4.5e-06 26.1 0.0 7.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|88603465|ref|YP_503643.1| - 6.7e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|88603465|ref|YP_503643.1| - 7.2e-06 25.5 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|88603465|ref|YP_503643.1| - 0.00051 18.7 0.0 0.00083 18.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Asn_synthase PF00733.21 gi|88603465|ref|YP_503643.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase FdhD-NarQ PF02634.15 gi|88603466|ref|YP_503644.1| - 3.1e-32 112.2 0.0 3.6e-32 112.0 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family Wzt_C PF14524.6 gi|88603467|ref|YP_503645.1| - 0.028 14.5 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Wzt C-terminal domain TPR_2 PF07719.17 gi|88603468|ref|YP_503646.1| - 3.9e-19 67.2 0.2 0.00024 20.9 0.0 6.6 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603468|ref|YP_503646.1| - 6.6e-18 63.7 0.0 2.8e-05 23.8 0.0 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603468|ref|YP_503646.1| - 9e-18 64.6 0.1 3.5e-09 37.1 0.1 4.2 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603468|ref|YP_503646.1| - 7.6e-17 60.7 0.0 1.3e-05 24.7 0.0 5.1 4 1 1 5 5 5 3 TPR repeat TPR_14 PF13428.6 gi|88603468|ref|YP_503646.1| - 4.3e-13 48.9 0.5 0.16 12.9 0.0 6.6 2 2 5 7 7 7 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603468|ref|YP_503646.1| - 7.5e-12 45.7 0.0 0.00074 20.1 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603468|ref|YP_503646.1| - 5e-11 41.9 0.8 0.0071 16.5 0.1 6.3 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603468|ref|YP_503646.1| - 3e-09 36.2 0.0 0.009 16.0 0.0 5.7 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603468|ref|YP_503646.1| - 7.8e-09 35.3 0.0 1.2 9.7 0.0 4.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603468|ref|YP_503646.1| - 1e-07 32.0 0.0 0.45 10.7 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603468|ref|YP_503646.1| - 8e-07 29.3 1.2 4.1 7.8 0.0 5.8 6 1 0 6 6 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603468|ref|YP_503646.1| - 7e-06 26.4 5.5 0.36 11.6 0.0 5.9 8 0 0 8 8 6 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88603468|ref|YP_503646.1| - 8.4e-06 25.6 1.3 0.067 12.9 0.1 4.0 2 1 2 4 4 4 1 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 gi|88603468|ref|YP_503646.1| - 0.00054 20.2 0.1 0.16 12.3 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|88603468|ref|YP_503646.1| - 0.018 13.8 0.0 0.032 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein kinase G tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603468|ref|YP_503646.1| - 0.033 14.4 0.0 17 5.7 0.0 3.4 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|88603468|ref|YP_503646.1| - 0.062 12.2 0.0 1.3 7.8 0.1 2.3 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|88603468|ref|YP_503646.1| - 0.088 12.9 0.1 1.3 9.1 0.0 2.9 3 0 0 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_MalT PF17874.1 gi|88603468|ref|YP_503646.1| - 0.15 11.4 0.0 12 5.2 0.0 2.2 2 0 0 2 2 2 0 MalT-like TPR region 4HB_MCP_1 PF12729.7 gi|88603468|ref|YP_503646.1| - 0.27 10.8 0.6 1.7 8.2 0.3 2.3 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction TPR_4 PF07721.14 gi|88603468|ref|YP_503646.1| - 0.28 11.9 1.0 1.1e+02 3.9 0.0 4.0 6 0 0 6 6 3 0 Tetratricopeptide repeat Pkinase PF00069.25 gi|88603469|ref|YP_503647.1| - 8.6e-13 48.3 0.0 1.4e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain PEGA PF08308.11 gi|88603469|ref|YP_503647.1| - 0.0019 18.0 0.2 0.0043 16.9 0.2 1.6 1 0 0 1 1 1 1 PEGA domain Pkinase PF00069.25 gi|88603470|ref|YP_503648.1| - 3.5e-16 59.4 0.0 9.2e-16 58.0 0.0 1.7 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|88603470|ref|YP_503648.1| - 2.1e-08 33.8 0.0 3.8e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_14 PF13428.6 gi|88603470|ref|YP_503648.1| - 0.00026 21.6 0.5 0.039 14.8 0.0 2.8 2 1 1 3 3 2 1 Tetratricopeptide repeat PEGA PF08308.11 gi|88603470|ref|YP_503648.1| - 0.00064 19.6 0.3 0.0016 18.3 0.0 1.8 2 0 0 2 2 2 1 PEGA domain TPR_6 PF13174.6 gi|88603470|ref|YP_503648.1| - 0.0073 16.9 0.1 0.95 10.2 0.0 2.9 2 1 0 2 2 2 1 Tetratricopeptide repeat DUF4834 PF16118.5 gi|88603470|ref|YP_503648.1| - 0.015 16.2 0.3 0.13 13.2 0.3 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) TPR_19 PF14559.6 gi|88603470|ref|YP_503648.1| - 0.018 15.5 0.9 0.038 14.5 0.9 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603470|ref|YP_503648.1| - 0.024 14.7 0.0 3.2 8.1 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603470|ref|YP_503648.1| - 0.067 13.8 1.1 15 6.3 0.2 2.3 1 1 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603470|ref|YP_503648.1| - 0.15 12.3 0.5 0.25 11.5 0.5 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TMCCDC2 PF15844.5 gi|88603470|ref|YP_503648.1| - 0.21 11.5 0.7 18 5.2 0.0 3.3 3 1 1 4 4 4 0 Transmembrane and coiled-coil domain-containing protein 2 4HB_MCP_1 PF12729.7 gi|88603470|ref|YP_503648.1| - 0.3 10.6 1.3 1.3 8.5 0.1 2.4 2 1 1 3 3 3 0 Four helix bundle sensory module for signal transduction NARP1 PF12569.8 gi|88603470|ref|YP_503648.1| - 2 7.3 7.3 1.2 7.9 0.0 2.5 3 0 0 3 3 3 0 NMDA receptor-regulated protein 1 Pkinase PF00069.25 gi|88603471|ref|YP_503649.1| - 9.8e-23 80.8 0.0 1.3e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|88603471|ref|YP_503649.1| - 9.5e-12 44.7 0.0 1.4e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase PEGA PF08308.11 gi|88603471|ref|YP_503649.1| - 1.5e-11 44.0 0.1 2.9e-11 43.1 0.1 1.5 1 0 0 1 1 1 1 PEGA domain CarboxypepD_reg PF13620.6 gi|88603471|ref|YP_503649.1| - 0.00042 20.5 0.0 0.0019 18.4 0.0 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain N_BRCA1_IG PF16158.5 gi|88603471|ref|YP_503649.1| - 0.037 14.8 0.1 0.24 12.1 0.0 2.2 2 0 0 2 2 2 0 Ig-like domain from next to BRCA1 gene AMP-binding PF00501.28 gi|88603472|ref|YP_503650.1| - 7.9e-18 64.2 0.0 1.1e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|88603472|ref|YP_503650.1| - 0.017 15.2 0.0 0.052 13.6 0.0 1.7 1 1 1 2 2 2 0 SIS domain Cytidylate_kin2 PF13189.6 gi|88603473|ref|YP_503651.1| - 1.3e-18 67.7 0.1 7.5e-17 62.0 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|88603473|ref|YP_503651.1| - 6.9e-13 48.8 0.1 1.4e-08 34.8 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|88603473|ref|YP_503651.1| - 4.1e-09 37.1 0.0 5.3e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|88603473|ref|YP_503651.1| - 2.3e-08 34.6 0.0 3.2e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|88603473|ref|YP_503651.1| - 0.0013 19.0 0.7 0.0044 17.3 0.7 1.9 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|88603473|ref|YP_503651.1| - 0.079 13.1 0.1 0.13 12.3 0.1 1.4 1 1 0 1 1 1 0 Shikimate kinase ADK PF00406.22 gi|88603473|ref|YP_503651.1| - 0.12 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylate kinase EMC3_TMCO1 PF01956.16 gi|88603474|ref|YP_503652.1| - 4e-50 169.9 9.5 4e-50 169.9 9.5 1.4 2 0 0 2 2 2 1 Integral membrane protein EMC3/TMCO1-like DUF4448 PF14610.6 gi|88603474|ref|YP_503652.1| - 0.0048 16.7 0.1 0.0074 16.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4448) Inj_translocase PF16928.5 gi|88603474|ref|YP_503652.1| - 0.058 12.8 1.7 0.076 12.4 1.7 1.1 1 0 0 1 1 1 0 DNA/protein translocase of phage P22 injectosome 60KD_IMP PF02096.20 gi|88603474|ref|YP_503652.1| - 0.29 11.0 18.6 0.058 13.3 12.9 2.3 1 1 1 2 2 2 0 60Kd inner membrane protein DUF2207 PF09972.9 gi|88603474|ref|YP_503652.1| - 0.74 8.5 6.9 0.35 9.6 1.7 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF4446 PF14584.6 gi|88603474|ref|YP_503652.1| - 3.3 7.7 8.1 4.3 7.3 7.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Wzy_C PF04932.15 gi|88603474|ref|YP_503652.1| - 3.9 7.1 7.4 0.76 9.4 0.1 2.3 2 1 0 2 2 2 0 O-Antigen ligase DUF1449 PF07290.11 gi|88603474|ref|YP_503652.1| - 5.7 6.5 7.2 65 3.1 7.2 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1449) AAA_17 PF13207.6 gi|88603475|ref|YP_503653.1| - 3.8e-33 114.8 0.1 4.9e-33 114.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|88603475|ref|YP_503653.1| - 1.4e-09 38.5 0.0 2.7e-09 37.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88603475|ref|YP_503653.1| - 1.5e-05 25.5 0.0 2e-05 25.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|88603475|ref|YP_503653.1| - 8.2e-05 22.6 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.6 gi|88603475|ref|YP_503653.1| - 0.00027 21.3 0.3 0.00058 20.2 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|88603475|ref|YP_503653.1| - 0.00036 20.7 0.0 0.00065 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|88603475|ref|YP_503653.1| - 0.00054 19.5 0.1 0.00073 19.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|88603475|ref|YP_503653.1| - 0.0015 18.8 0.0 0.0026 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|88603475|ref|YP_503653.1| - 0.0039 16.9 0.8 0.12 12.0 0.8 2.5 1 1 0 1 1 1 1 Thymidylate kinase ATPase_2 PF01637.18 gi|88603475|ref|YP_503653.1| - 0.0056 16.6 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|88603475|ref|YP_503653.1| - 0.0057 16.6 0.0 0.0089 16.0 0.0 1.3 1 1 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|88603475|ref|YP_503653.1| - 0.0059 17.0 0.2 0.012 16.0 0.1 1.8 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.18 gi|88603475|ref|YP_503653.1| - 0.011 15.0 0.3 0.023 14.0 0.0 1.5 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|88603475|ref|YP_503653.1| - 0.015 15.6 0.1 0.026 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|88603475|ref|YP_503653.1| - 0.017 14.9 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|88603475|ref|YP_503653.1| - 0.028 14.5 0.2 0.051 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|88603475|ref|YP_503653.1| - 0.029 13.8 0.0 0.035 13.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|88603475|ref|YP_503653.1| - 0.032 14.0 0.5 0.07 12.8 0.3 1.9 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|88603475|ref|YP_503653.1| - 0.035 13.3 0.1 0.05 12.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MeaB PF03308.16 gi|88603475|ref|YP_503653.1| - 0.035 13.1 0.1 0.068 12.1 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|88603475|ref|YP_503653.1| - 0.042 13.9 0.1 0.11 12.6 0.0 1.8 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|88603475|ref|YP_503653.1| - 0.046 13.5 0.1 0.12 12.1 0.0 1.6 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|88603475|ref|YP_503653.1| - 0.046 13.5 0.9 0.13 12.0 0.5 1.8 1 1 1 2 2 2 0 AAA domain DAP3 PF10236.9 gi|88603475|ref|YP_503653.1| - 0.075 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATP_bind_1 PF03029.17 gi|88603475|ref|YP_503653.1| - 0.083 12.7 0.0 0.27 11.0 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein UvrD-helicase PF00580.21 gi|88603475|ref|YP_503653.1| - 0.12 11.9 1.1 0.23 11.0 1.1 1.8 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain SecY PF00344.20 gi|88603476|ref|YP_503654.1| - 3.3e-67 226.9 24.5 4.3e-67 226.5 24.5 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|88603476|ref|YP_503654.1| - 6.3e-12 45.1 0.8 2.8e-11 43.0 0.8 2.3 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|88603477|ref|YP_503655.1| - 2.9e-18 66.8 1.2 3.8e-18 66.4 1.2 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|88603478|ref|YP_503656.1| - 3e-15 55.8 0.4 5.3e-15 55.0 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|88603479|ref|YP_503657.1| - 3e-24 84.8 3.1 6.8e-24 83.6 3.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|88603479|ref|YP_503657.1| - 2.1e-22 78.3 0.1 3.8e-22 77.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|88603480|ref|YP_503658.1| - 1.3e-41 142.3 2.5 5.3e-29 101.3 1.1 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|88603480|ref|YP_503658.1| - 4.2e-08 33.6 0.2 7.1e-08 32.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M157 PF11624.8 gi|88603480|ref|YP_503658.1| - 0.12 11.7 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 MHC class I-like protein M157 Ribosomal_L19e PF01280.20 gi|88603481|ref|YP_503659.1| - 1.5e-55 187.2 7.1 1.8e-55 186.9 7.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.7 gi|88603481|ref|YP_503659.1| - 0.036 14.2 1.6 0.18 12.0 0.1 2.7 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.18 gi|88603482|ref|YP_503660.1| - 4.3e-34 117.2 0.1 5.5e-34 116.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|88603483|ref|YP_503661.1| - 4.5e-27 94.5 1.8 1.8e-12 47.7 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|88603484|ref|YP_503662.1| - 7e-24 84.2 0.0 8.2e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|88603485|ref|YP_503663.1| - 4.4e-12 45.6 3.4 4.8e-12 45.4 3.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L5_C PF00673.21 gi|88603486|ref|YP_503664.1| - 8e-24 83.6 0.0 1.2e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|88603486|ref|YP_503664.1| - 7.1e-16 58.3 0.4 1.4e-15 57.3 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L5 FctA PF12892.7 gi|88603486|ref|YP_503664.1| - 0.13 13.1 0.0 0.15 12.9 0.0 1.2 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Ribosomal_S4e PF00900.20 gi|88603487|ref|YP_503665.1| - 5.6e-23 80.6 0.2 9.5e-23 79.9 0.2 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|88603487|ref|YP_503665.1| - 4e-13 49.2 2.0 7.4e-13 48.4 2.0 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|88603487|ref|YP_503665.1| - 0.0011 18.9 0.7 0.0026 17.7 0.1 2.1 2 0 0 2 2 2 1 KOW motif S4 PF01479.25 gi|88603487|ref|YP_503665.1| - 0.012 15.4 0.9 0.035 13.8 0.1 2.1 2 0 0 2 2 2 0 S4 domain Ribosomal_L26 PF16906.5 gi|88603488|ref|YP_503666.1| - 1.3e-30 105.7 0.2 1.4e-30 105.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|88603488|ref|YP_503666.1| - 1.4e-05 24.8 2.5 1.4e-05 24.8 2.5 2.0 2 0 0 2 2 2 1 KOW motif eIF-1a PF01176.19 gi|88603488|ref|YP_503666.1| - 0.078 12.8 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Multi_ubiq PF14452.6 gi|88603488|ref|YP_503666.1| - 0.099 12.9 0.3 0.13 12.5 0.3 1.2 1 0 0 1 1 1 0 Multiubiquitin Ribosomal_L14 PF00238.19 gi|88603489|ref|YP_503667.1| - 5.2e-33 113.7 1.3 5.8e-33 113.6 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|88603490|ref|YP_503668.1| - 8e-28 96.3 2.2 9.7e-28 96.1 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 XPG_I_2 PF12813.7 gi|88603490|ref|YP_503668.1| - 0.1 12.0 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 XPG domain containing UPF0086 PF01868.16 gi|88603491|ref|YP_503669.1| - 2.1e-20 72.4 0.4 2.4e-20 72.2 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|88603492|ref|YP_503670.1| - 2.7e-14 52.8 0.4 3e-14 52.7 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein LEM PF03020.15 gi|88603492|ref|YP_503670.1| - 0.064 12.8 0.3 0.35 10.5 0.2 2.0 1 1 1 2 2 2 0 LEM domain DUF561 PF04481.12 gi|88603492|ref|YP_503670.1| - 0.12 11.5 0.1 0.14 11.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Sirohm_synth_C PF14823.6 gi|88603492|ref|YP_503670.1| - 0.35 10.5 4.4 2.2 8.0 2.0 2.2 1 1 1 2 2 2 0 Sirohaem biosynthesis protein C-terminal Ribosomal_S3_C PF00189.20 gi|88603493|ref|YP_503671.1| - 9.8e-22 77.3 0.2 2e-21 76.3 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|88603493|ref|YP_503671.1| - 7.6e-11 41.7 0.1 1.4e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|88603493|ref|YP_503671.1| - 0.024 14.5 0.2 0.34 10.8 0.0 2.4 2 0 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|88603493|ref|YP_503671.1| - 0.13 12.2 1.0 0.25 11.2 0.1 2.0 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|88603494|ref|YP_503672.1| - 1.8e-24 85.9 0.0 2.5e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ACT_5 PF13710.6 gi|88603494|ref|YP_503672.1| - 0.12 12.3 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 ACT domain Ribosomal_S19 PF00203.21 gi|88603495|ref|YP_503673.1| - 2.9e-23 81.6 0.0 4.4e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.18 gi|88603496|ref|YP_503674.1| - 1.7e-43 147.8 2.2 2.8e-43 147.1 2.2 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|88603496|ref|YP_503674.1| - 1.8e-14 53.4 0.0 7e-14 51.6 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|88603497|ref|YP_503675.1| - 2.7e-12 46.9 0.3 3.6e-12 46.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 BTB_3 PF16017.5 gi|88603497|ref|YP_503675.1| - 0.12 12.5 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 BTB/POZ domain Ribosomal_L4 PF00573.22 gi|88603498|ref|YP_503676.1| - 1.2e-41 142.5 0.8 1.4e-41 142.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF1338 PF07063.13 gi|88603498|ref|YP_503676.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) Ribosomal_L3 PF00297.22 gi|88603499|ref|YP_503677.1| - 6.4e-90 301.8 0.9 7.4e-90 301.6 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 DUF2634 PF10934.8 gi|88603499|ref|YP_503677.1| - 0.16 12.1 0.1 0.3 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) TFX_C PF14601.6 gi|88603500|ref|YP_503678.1| - 4.7e-32 109.8 0.0 7.5e-32 109.1 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|88603500|ref|YP_503678.1| - 5.1e-07 29.1 0.4 1.1e-06 28.1 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|88603500|ref|YP_503678.1| - 7.6e-06 25.4 0.5 1.5e-05 24.4 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|88603500|ref|YP_503678.1| - 0.012 15.2 0.3 0.05 13.3 0.0 2.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_31 PF13560.6 gi|88603500|ref|YP_503678.1| - 0.041 14.2 0.1 0.067 13.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|88603500|ref|YP_503678.1| - 0.083 13.1 1.9 0.17 12.1 0.3 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like ThiC-associated PF13667.6 gi|88603500|ref|YP_503678.1| - 0.12 12.2 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 ThiC-associated domain MTD PF01993.18 gi|88603501|ref|YP_503679.1| - 8e-118 392.7 2.2 9e-118 392.5 2.2 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF4921 PF16268.5 gi|88603502|ref|YP_503680.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) Bac_luciferase PF00296.20 gi|88603503|ref|YP_503681.1| - 2.3e-50 171.8 0.0 2.8e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Tubulin PF00091.25 gi|88603504|ref|YP_503682.1| - 1.3e-06 28.8 0.0 2.4e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain HD_5 PF13487.6 gi|88603504|ref|YP_503682.1| - 0.067 13.5 0.2 0.18 12.1 0.2 1.7 1 0 0 1 1 1 0 HD domain TrkA_N PF02254.18 gi|88603504|ref|YP_503682.1| - 0.079 13.2 0.0 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain NRD1_2 PF01995.16 gi|88603505|ref|YP_503683.1| - 8.5e-78 260.9 0.0 1e-77 260.6 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|88603505|ref|YP_503683.1| - 3.8e-19 68.4 0.3 6.8e-19 67.6 0.3 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain KH_4 PF13083.6 gi|88603505|ref|YP_503683.1| - 0.084 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 KH domain dUTPase PF00692.19 gi|88603506|ref|YP_503684.1| - 3.4e-21 75.3 0.0 4.3e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|88603506|ref|YP_503684.1| - 0.00052 18.9 0.1 0.1 11.4 0.0 2.6 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CarboxypepD_reg PF13620.6 gi|88603507|ref|YP_503685.1| - 2.7e-20 72.4 3.2 1.9e-05 24.9 0.4 5.4 5 1 0 5 5 5 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603507|ref|YP_503685.1| - 7.4e-11 41.9 0.2 0.057 13.4 0.0 4.9 1 1 4 5 5 5 3 CarboxypepD_reg-like domain PEGA PF08308.11 gi|88603507|ref|YP_503685.1| - 3.5e-06 26.8 1.9 4 7.4 0.0 5.3 5 0 0 5 5 5 2 PEGA domain Big_1 PF02369.16 gi|88603507|ref|YP_503685.1| - 0.00053 19.9 0.0 0.26 11.3 0.0 3.9 5 0 0 5 5 5 1 Bacterial Ig-like domain (group 1) bMG3 PF11974.8 gi|88603507|ref|YP_503685.1| - 0.034 14.2 0.0 0.41 10.7 0.0 2.6 3 0 0 3 3 3 0 Bacterial alpha-2-macroglobulin MG3 domain Glycos_transf_3 PF00591.21 gi|88603508|ref|YP_503686.1| - 8.5e-17 61.6 3.4 3.1e-14 53.2 1.1 2.8 2 1 0 2 2 2 2 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|88603508|ref|YP_503686.1| - 2.1e-14 53.1 0.1 4.6e-14 52.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|88603508|ref|YP_503686.1| - 8.1e-13 47.8 0.0 2e-12 46.6 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2254 PF10011.9 gi|88603508|ref|YP_503686.1| - 0.0011 17.8 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|88603508|ref|YP_503686.1| - 0.0033 17.4 0.1 0.0063 16.5 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain XkdW PF09636.10 gi|88603508|ref|YP_503686.1| - 0.041 14.0 0.0 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 XkdW protein DUF3821 PF12863.7 gi|88603509|ref|YP_503687.1| - 6.5e-81 271.2 17.0 6.6e-79 264.6 7.7 3.6 4 1 0 4 4 4 2 Domain of unknown function (DUF3821) PGF-CTERM PF18204.1 gi|88603509|ref|YP_503687.1| - 7.9e-06 25.7 6.8 7.9e-06 25.7 6.8 1.7 2 0 0 2 2 2 1 PGF-CTERM motif Ig_3 PF13927.6 gi|88603509|ref|YP_503687.1| - 0.0011 19.5 3.3 0.073 13.7 0.0 4.9 5 1 0 5 5 5 1 Immunoglobulin domain PilA4 PF18682.1 gi|88603509|ref|YP_503687.1| - 0.16 12.4 1.1 0.94 9.9 0.2 2.9 2 0 0 2 2 2 0 Pilin A4 TonB_N PF16031.5 gi|88603509|ref|YP_503687.1| - 1.1 9.7 18.2 3.4 8.2 18.2 1.8 1 0 0 1 1 1 0 TonB polyproline region bMG6 PF17962.1 gi|88603509|ref|YP_503687.1| - 2.3 8.4 9.2 0.21 11.7 0.2 3.8 5 1 0 5 5 5 0 Bacterial macroglobulin domain 6 Fibrillarin PF01269.17 gi|88603510|ref|YP_503688.1| - 6.8e-44 149.7 0.0 8.3e-44 149.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|88603511|ref|YP_503689.1| - 4.2e-31 108.2 0.1 2.2e-30 105.9 0.0 1.7 1 1 0 2 2 2 1 snoRNA binding domain, fibrillarin RasGAP_C PF03836.15 gi|88603511|ref|YP_503689.1| - 0.031 14.4 0.1 0.085 13.0 0.1 1.8 1 1 0 1 1 1 0 RasGAP C-terminus TctA PF01970.16 gi|88603512|ref|YP_503690.1| - 9.4e-48 162.9 45.5 1.1e-47 162.7 45.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HEM4 PF02602.15 gi|88603513|ref|YP_503691.1| - 6.1e-18 65.0 0.0 4e-17 62.4 0.0 1.9 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TruB_N PF01509.18 gi|88603514|ref|YP_503692.1| - 4.1e-25 88.9 0.1 2.2e-21 76.8 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|88603514|ref|YP_503692.1| - 2.3e-20 72.5 0.2 6e-20 71.2 0.2 1.8 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|88603514|ref|YP_503692.1| - 2.5e-10 40.2 0.1 3.1e-09 36.7 0.1 2.3 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|88603514|ref|YP_503692.1| - 0.00077 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB-C_2 PF09157.11 gi|88603514|ref|YP_503692.1| - 0.0047 16.9 0.0 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 Pseudouridine synthase II TruB, C-terminal STT3 PF02516.14 gi|88603516|ref|YP_503694.1| - 1.2e-21 77.2 49.8 7.8e-21 74.5 49.8 2.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|88603516|ref|YP_503694.1| - 1.6e-10 41.2 2.3 3.8e-10 39.9 2.3 1.6 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain Acylphosphatase PF00708.18 gi|88603518|ref|YP_503696.1| - 2.8e-15 56.5 0.2 3.3e-15 56.2 0.2 1.1 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.12 gi|88603518|ref|YP_503696.1| - 0.015 15.4 0.1 0.018 15.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) HSP9_HSP12 PF04119.12 gi|88603518|ref|YP_503696.1| - 0.049 14.0 0.2 1.4 9.4 0.2 2.1 1 1 0 1 1 1 0 Heat shock protein 9/12 GCD14 PF08704.10 gi|88603519|ref|YP_503697.1| - 1.8e-09 37.6 0.1 1.8e-08 34.4 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|88603519|ref|YP_503697.1| - 1.1e-06 29.3 0.1 1.8e-06 28.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88603519|ref|YP_503697.1| - 1.3e-06 28.4 0.0 1.8e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|88603519|ref|YP_503697.1| - 1.3e-06 28.3 0.0 2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88603519|ref|YP_503697.1| - 2e-06 27.1 0.0 2.8e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|88603519|ref|YP_503697.1| - 0.0012 19.5 0.2 0.003 18.2 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|88603519|ref|YP_503697.1| - 0.0015 18.1 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|88603519|ref|YP_503697.1| - 0.0045 16.4 0.1 0.0059 16.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GidB PF02527.15 gi|88603519|ref|YP_503697.1| - 0.0088 15.4 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_24 PF13578.6 gi|88603519|ref|YP_503697.1| - 0.012 16.6 0.2 0.026 15.5 0.1 1.6 2 0 0 2 2 1 0 Methyltransferase domain Voltage_CLC PF00654.20 gi|88603519|ref|YP_503697.1| - 0.065 12.5 0.1 0.11 11.7 0.1 1.3 2 0 0 2 2 2 0 Voltage gated chloride channel TehB PF03848.14 gi|88603519|ref|YP_503697.1| - 0.08 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|88603519|ref|YP_503697.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88603519|ref|YP_503697.1| - 0.15 12.8 0.0 0.25 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|88603519|ref|YP_503697.1| - 0.17 11.6 0.0 0.6 9.8 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF938) PrmA PF06325.13 gi|88603519|ref|YP_503697.1| - 0.21 10.9 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NAC PF01849.18 gi|88603520|ref|YP_503698.1| - 1.1e-16 60.5 1.4 2e-16 59.7 1.0 1.6 2 0 0 2 2 2 1 NAC domain CUE PF02845.16 gi|88603520|ref|YP_503698.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 CUE domain PASTA PF03793.19 gi|88603520|ref|YP_503698.1| - 0.071 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 PASTA domain TGT_C2 PF14810.6 gi|88603521|ref|YP_503699.1| - 6.2e-27 93.5 0.3 1.4e-26 92.4 0.2 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|88603521|ref|YP_503699.1| - 7e-19 67.6 1.3 9.8e-19 67.1 1.3 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|88603521|ref|YP_503699.1| - 0.02 15.1 0.0 0.033 14.5 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain TruB-C_2 PF09157.11 gi|88603521|ref|YP_503699.1| - 0.062 13.4 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal PUA_3 PF17785.1 gi|88603521|ref|YP_503699.1| - 0.13 12.1 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 PUA-like domain DHHA1 PF02272.19 gi|88603522|ref|YP_503700.1| - 5.2e-08 33.4 0.0 1.2e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|88603522|ref|YP_503700.1| - 0.00014 22.0 0.1 0.0003 21.0 0.1 1.5 1 0 0 1 1 1 1 DHH family Carb_kinase PF01256.17 gi|88603523|ref|YP_503701.1| - 1.6e-40 139.2 0.1 2.8e-40 138.3 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|88603523|ref|YP_503701.1| - 4.3e-31 108.1 0.0 7.7e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|88603523|ref|YP_503701.1| - 3.9e-05 23.1 0.8 6.7e-05 22.4 0.8 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|88603523|ref|YP_503701.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF917 PF06032.12 gi|88603523|ref|YP_503701.1| - 0.053 12.4 0.1 1.4 7.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF917) MoaC PF01967.21 gi|88603524|ref|YP_503702.1| - 7.4e-45 152.4 3.1 8.3e-45 152.2 3.1 1.0 1 0 0 1 1 1 1 MoaC family Ribosomal_L15e PF00827.17 gi|88603525|ref|YP_503703.1| - 3.9e-83 277.9 10.2 4.4e-83 277.7 10.2 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNase_P_p30 PF01876.16 gi|88603526|ref|YP_503704.1| - 4.8e-14 52.4 0.0 8.6e-14 51.5 0.0 1.3 2 0 0 2 2 2 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.19 gi|88603527|ref|YP_503705.1| - 7.6e-17 61.4 0.1 1.1e-16 60.9 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|88603528|ref|YP_503706.1| - 6.8e-59 198.5 0.1 8.9e-59 198.2 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|88603528|ref|YP_503706.1| - 3.1e-14 52.3 0.2 5.6e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS_C PF09377.10 gi|88603529|ref|YP_503707.1| - 2.3e-23 82.4 0.1 6.1e-23 81.1 0.0 1.7 2 0 0 2 2 2 1 SBDS protein C-terminal domain SBDS PF01172.18 gi|88603529|ref|YP_503707.1| - 1.5e-22 79.4 0.1 2.5e-22 78.7 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein Ribosomal_L37ae PF01780.19 gi|88603530|ref|YP_503708.1| - 4.7e-32 109.9 1.6 6.7e-32 109.4 1.6 1.2 1 0 0 1 1 1 1 Ribosomal L37ae protein family IBR PF01485.21 gi|88603530|ref|YP_503708.1| - 0.00034 20.8 0.1 0.00042 20.5 0.1 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Zn_Tnp_IS1595 PF12760.7 gi|88603530|ref|YP_503708.1| - 0.0025 17.7 1.9 0.0038 17.2 1.9 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|88603530|ref|YP_503708.1| - 0.014 15.4 1.0 0.021 14.7 1.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|88603530|ref|YP_503708.1| - 0.14 12.3 1.7 0.22 11.7 1.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.13 gi|88603531|ref|YP_503709.1| - 2.5e-12 46.2 4.9 3.3e-12 45.9 4.9 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|88603531|ref|YP_503709.1| - 0.00022 20.8 2.1 0.034 13.7 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|88603531|ref|YP_503709.1| - 0.00048 19.4 2.0 0.0034 16.7 2.2 1.9 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|88603531|ref|YP_503709.1| - 0.00051 20.0 0.4 0.00051 20.0 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|88603531|ref|YP_503709.1| - 0.00051 20.1 1.7 0.00092 19.2 1.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc-ribbon_6 PF10005.9 gi|88603531|ref|YP_503709.1| - 0.0006 20.4 0.3 0.00061 20.4 0.3 1.0 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|88603531|ref|YP_503709.1| - 0.0022 17.9 2.4 0.41 10.7 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|88603531|ref|YP_503709.1| - 0.0031 17.5 0.4 0.0036 17.2 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbons Prok-RING_4 PF14447.6 gi|88603531|ref|YP_503709.1| - 0.0097 15.7 1.5 0.013 15.4 1.5 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 zf-HIT PF04438.16 gi|88603531|ref|YP_503709.1| - 0.011 15.6 2.0 0.28 11.1 0.6 2.1 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.7 gi|88603531|ref|YP_503709.1| - 0.012 15.6 0.6 0.014 15.4 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon YacG PF03884.14 gi|88603531|ref|YP_503709.1| - 0.012 15.3 2.0 0.018 14.8 1.9 1.3 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG Prok-RING_1 PF14446.6 gi|88603531|ref|YP_503709.1| - 0.014 15.3 0.5 0.016 15.1 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.6 gi|88603531|ref|YP_503709.1| - 0.019 14.8 1.9 0.63 10.0 0.3 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-Sec23_Sec24 PF04810.15 gi|88603531|ref|YP_503709.1| - 0.031 14.3 2.4 0.39 10.8 0.2 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.10 gi|88603531|ref|YP_503709.1| - 0.034 14.3 3.6 0.078 13.1 3.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|88603531|ref|YP_503709.1| - 0.036 13.8 1.9 0.062 13.0 1.9 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|88603531|ref|YP_503709.1| - 0.095 12.4 1.8 8.4 6.2 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|88603531|ref|YP_503709.1| - 0.13 12.2 6.3 9.8 6.2 6.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|88603531|ref|YP_503709.1| - 0.19 12.0 2.9 3.5 7.9 0.1 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.12 gi|88603531|ref|YP_503709.1| - 0.29 11.5 3.3 0.9 9.9 0.4 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Pcc1 PF09341.10 gi|88603533|ref|YP_503711.1| - 1.9e-08 34.3 0.0 2.3e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|88603534|ref|YP_503712.1| - 1.2e-19 70.2 17.4 1.4e-19 70.0 17.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit Colicin_E5 PF12106.8 gi|88603534|ref|YP_503712.1| - 0.0029 17.9 1.0 0.0045 17.3 1.0 1.3 1 0 0 1 1 1 1 Colicin E5 ribonuclease domain LegC3_N PF18654.1 gi|88603534|ref|YP_503712.1| - 0.0093 15.2 9.8 0.011 15.0 9.8 1.0 1 0 0 1 1 1 1 LegC3 N-terminal coiled-coil domain YscO PF07321.12 gi|88603534|ref|YP_503712.1| - 0.01 15.8 9.9 0.33 10.9 2.5 2.1 2 0 0 2 2 2 0 Type III secretion protein YscO APG6_N PF17675.1 gi|88603534|ref|YP_503712.1| - 0.011 16.3 9.3 0.016 15.7 9.3 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Nup54 PF13874.6 gi|88603534|ref|YP_503712.1| - 0.018 15.1 0.4 0.018 15.1 0.4 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 BMFP PF04380.13 gi|88603534|ref|YP_503712.1| - 0.041 14.4 5.4 4.6 7.8 0.1 3.1 2 1 1 3 3 3 0 Membrane fusogenic activity Filament PF00038.21 gi|88603534|ref|YP_503712.1| - 0.052 13.1 12.3 0.064 12.8 12.3 1.1 1 0 0 1 1 1 0 Intermediate filament protein GTP1_OBG PF01018.22 gi|88603534|ref|YP_503712.1| - 0.11 12.0 0.3 0.16 11.6 0.3 1.1 1 0 0 1 1 1 0 GTP1/OBG DHR10 PF18595.1 gi|88603534|ref|YP_503712.1| - 0.12 12.5 15.4 0.25 11.4 3.5 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain CENP-F_leu_zip PF10473.9 gi|88603534|ref|YP_503712.1| - 0.14 12.2 13.7 0.19 11.7 2.2 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1394 PF07159.12 gi|88603534|ref|YP_503712.1| - 0.22 10.7 7.7 0.26 10.5 7.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) BRI3BP PF14965.6 gi|88603534|ref|YP_503712.1| - 0.23 11.0 0.6 0.57 9.7 0.1 1.7 1 1 1 2 2 2 0 Negative regulator of p53/TP53 ZapB PF06005.12 gi|88603534|ref|YP_503712.1| - 0.26 11.8 16.9 1.6 9.2 3.7 2.1 2 0 0 2 2 2 0 Cell division protein ZapB RNA_pol_Rpb2_1 PF04563.15 gi|88603534|ref|YP_503712.1| - 0.3 10.6 5.7 0.29 10.6 2.9 1.9 1 1 1 2 2 2 0 RNA polymerase beta subunit Spc24 PF08286.11 gi|88603534|ref|YP_503712.1| - 0.4 10.9 13.6 0.56 10.5 2.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 TSKS PF15358.6 gi|88603534|ref|YP_503712.1| - 0.4 9.0 10.6 0.089 11.2 3.1 1.9 1 1 1 2 2 2 0 Testis-specific serine kinase substrate V_ATPase_I PF01496.19 gi|88603534|ref|YP_503712.1| - 0.48 8.3 8.3 0.57 8.0 8.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2408 PF10303.9 gi|88603534|ref|YP_503712.1| - 0.56 10.8 9.6 0.88 10.1 9.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Rx_N PF18052.1 gi|88603534|ref|YP_503712.1| - 0.62 10.4 7.6 2.7 8.3 1.2 2.2 2 0 0 2 2 2 0 Rx N-terminal domain HAUS-augmin3 PF14932.6 gi|88603534|ref|YP_503712.1| - 0.67 9.5 14.5 0.04 13.5 1.5 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Prefoldin PF02996.17 gi|88603534|ref|YP_503712.1| - 0.68 9.8 15.3 0.26 11.2 4.5 2.3 1 1 2 3 3 3 0 Prefoldin subunit SLIDE PF09111.10 gi|88603534|ref|YP_503712.1| - 0.82 9.7 9.1 0.22 11.6 2.7 2.1 2 0 0 2 2 2 0 SLIDE HSBP1 PF06825.12 gi|88603534|ref|YP_503712.1| - 0.89 9.5 14.3 2.5 8.0 3.7 3.3 2 1 1 3 3 3 0 Heat shock factor binding protein 1 Sec34 PF04136.15 gi|88603534|ref|YP_503712.1| - 0.92 9.4 8.4 1.4 8.8 0.7 2.1 2 0 0 2 2 2 0 Sec34-like family MerR-DNA-bind PF09278.11 gi|88603534|ref|YP_503712.1| - 1.2 9.7 7.4 1.3 9.6 0.2 2.7 2 1 1 3 3 3 0 MerR, DNA binding DUF1664 PF07889.12 gi|88603534|ref|YP_503712.1| - 2 8.5 12.8 5.1 7.2 2.5 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|88603534|ref|YP_503712.1| - 2 8.4 13.3 1e+02 2.9 13.3 2.1 1 1 0 1 1 1 0 Laminin Domain II DUF948 PF06103.11 gi|88603534|ref|YP_503712.1| - 2.9 8.2 7.5 2.1 8.7 0.7 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) YabA PF06156.13 gi|88603534|ref|YP_503712.1| - 3.4 8.4 14.1 4.8 7.9 4.4 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DUF4407 PF14362.6 gi|88603534|ref|YP_503712.1| - 4.5 6.5 8.8 25 4.1 8.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4795 PF16043.5 gi|88603534|ref|YP_503712.1| - 4.5 6.8 14.2 12 5.4 14.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) FlaC_arch PF05377.11 gi|88603534|ref|YP_503712.1| - 5.2 7.5 15.0 1.1 9.6 4.9 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4510 PF14971.6 gi|88603534|ref|YP_503712.1| - 6.4 7.1 10.5 1.7e+02 2.4 10.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4510) Spore_II_R PF09551.10 gi|88603534|ref|YP_503712.1| - 6.6 7.2 11.3 1.1 9.7 2.2 2.0 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) Prominin PF05478.11 gi|88603534|ref|YP_503712.1| - 8 4.3 10.4 17 3.2 10.4 1.5 1 1 0 1 1 1 0 Prominin NosD PF05048.13 gi|88603535|ref|YP_503713.1| - 3.2e-30 105.2 17.8 5.3e-30 104.5 17.8 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) CARDB PF07705.11 gi|88603535|ref|YP_503713.1| - 1.8e-20 73.1 7.9 3.2e-12 46.6 0.1 3.1 4 0 0 4 4 4 2 CARDB Beta_helix PF13229.6 gi|88603535|ref|YP_503713.1| - 1.5e-12 47.6 20.2 1.5e-12 47.6 20.2 1.8 2 0 0 2 2 2 1 Right handed beta helix region DUF4832 PF16116.5 gi|88603535|ref|YP_503713.1| - 0.00035 20.5 0.0 0.021 14.7 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) BsuPI PF12690.7 gi|88603535|ref|YP_503713.1| - 0.0092 16.0 0.0 0.042 13.9 0.0 2.1 2 0 0 2 2 2 1 Intracellular proteinase inhibitor MG2 PF01835.19 gi|88603535|ref|YP_503713.1| - 0.066 13.7 0.0 0.4 11.2 0.0 2.4 2 0 0 2 2 2 0 MG2 domain DUF11 PF01345.18 gi|88603535|ref|YP_503713.1| - 0.072 13.4 0.0 0.25 11.7 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function DUF11 DUF5123 PF17161.4 gi|88603535|ref|YP_503713.1| - 2.4 9.3 10.8 0.062 14.4 3.5 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5123) FKBP_C PF00254.28 gi|88603536|ref|YP_503714.1| - 8e-21 74.2 0.0 1.8e-20 73.1 0.0 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase MotY_N PF18393.1 gi|88603536|ref|YP_503714.1| - 0.2 11.8 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 MotY N-terminal domain TrmB PF01978.19 gi|88603537|ref|YP_503715.1| - 6.1e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|88603537|ref|YP_503715.1| - 0.0079 16.0 0.0 0.04 13.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|88603537|ref|YP_503715.1| - 0.025 14.7 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|88603537|ref|YP_503715.1| - 0.084 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|88603537|ref|YP_503715.1| - 0.11 12.5 0.1 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 MarR family Homoserine_dh PF00742.19 gi|88603538|ref|YP_503716.1| - 1.3e-55 188.0 0.0 1.9e-55 187.4 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|88603538|ref|YP_503716.1| - 8e-12 45.8 0.0 1.4e-11 45.1 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|88603538|ref|YP_503716.1| - 0.027 14.6 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.21 gi|88603538|ref|YP_503716.1| - 0.046 13.4 0.1 0.34 10.6 0.1 2.1 1 1 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF1611_N PF17396.2 gi|88603538|ref|YP_503716.1| - 0.054 13.7 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain DUF5565 PF17720.1 gi|88603538|ref|YP_503716.1| - 0.083 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5565) ACT PF01842.25 gi|88603539|ref|YP_503717.1| - 0.0018 18.0 0.2 0.011 15.5 0.1 2.2 1 1 1 2 2 2 1 ACT domain Saccharop_dh_N PF04455.12 gi|88603539|ref|YP_503717.1| - 0.031 14.7 0.4 0.077 13.4 0.2 1.7 2 0 0 2 2 2 0 LOR/SDH bifunctional enzyme conserved region DUF3783 PF12646.7 gi|88603539|ref|YP_503717.1| - 0.17 11.8 0.3 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) PEGA PF08308.11 gi|88603540|ref|YP_503718.1| - 2.8e-10 39.9 0.0 1e-09 38.2 0.0 2.0 2 0 0 2 2 2 1 PEGA domain CarboxypepD_reg PF13620.6 gi|88603540|ref|YP_503718.1| - 5.4e-07 29.8 1.3 0.0021 18.3 0.3 2.8 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603540|ref|YP_503718.1| - 0.0012 18.8 0.0 2.1 8.4 0.0 3.3 3 1 0 3 3 3 2 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|88603540|ref|YP_503718.1| - 0.0039 17.2 0.5 0.012 15.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.21 gi|88603540|ref|YP_503718.1| - 0.095 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Dioxygenase DJ-1_PfpI PF01965.24 gi|88603541|ref|YP_503719.1| - 1.4e-25 90.0 0.4 1.6e-25 89.8 0.4 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family IGPS PF00218.21 gi|88603541|ref|YP_503719.1| - 0.081 12.1 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase GTP_EFTU_D2 PF03144.25 gi|88603542|ref|YP_503720.1| - 2e-11 44.1 0.1 3.9e-11 43.2 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|88603542|ref|YP_503720.1| - 0.0067 16.3 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Radical_SAM_N PF08497.10 gi|88603543|ref|YP_503721.1| - 6.8e-119 396.5 0.0 8.7e-119 396.2 0.0 1.1 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|88603543|ref|YP_503721.1| - 3.9e-28 98.6 0.0 6.8e-28 97.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|88603543|ref|YP_503721.1| - 3e-06 27.7 0.1 5.7e-06 26.8 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|88603543|ref|YP_503721.1| - 0.02 14.9 0.0 11 6.1 0.0 3.2 2 1 0 2 2 2 0 B12 binding domain CMD PF02627.20 gi|88603544|ref|YP_503722.1| - 1.4e-17 63.5 0.0 2.1e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PEGA PF08308.11 gi|88603546|ref|YP_503724.1| - 2.2e-31 107.5 5.1 3.6e-14 52.4 0.1 3.6 3 1 0 3 3 3 3 PEGA domain CarboxypepD_reg PF13620.6 gi|88603546|ref|YP_503724.1| - 1e-07 32.1 0.7 0.52 10.6 0.0 3.8 2 1 1 3 3 3 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603546|ref|YP_503724.1| - 0.0025 17.8 0.1 0.48 10.5 0.0 3.3 3 1 0 3 3 3 1 CarboxypepD_reg-like domain HILPDA PF15220.6 gi|88603546|ref|YP_503724.1| - 0.13 12.4 0.0 2 8.6 0.0 2.5 2 0 0 2 2 2 0 Hypoxia-inducible lipid droplet-associated PEGA PF08308.11 gi|88603547|ref|YP_503725.1| - 8.9e-20 70.4 0.2 3.4e-13 49.3 0.1 2.3 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|88603547|ref|YP_503725.1| - 0.00063 20.0 0.1 0.48 10.7 0.0 2.6 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603547|ref|YP_503725.1| - 0.078 13.0 0.0 0.4 10.7 0.0 2.0 2 0 0 2 2 2 0 CarboxypepD_reg-like domain PEGA PF08308.11 gi|88603548|ref|YP_503726.1| - 4.7e-23 80.9 3.0 3.1e-11 43.0 0.1 3.3 3 0 0 3 3 3 3 PEGA domain CarboxypepD_reg PF13620.6 gi|88603548|ref|YP_503726.1| - 0.00013 22.1 0.4 1.6 9.0 0.0 3.3 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4183 PF13799.6 gi|88603548|ref|YP_503726.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4183) Aconitase_2_N PF06434.13 gi|88603550|ref|YP_503728.1| - 0.059 13.0 0.2 0.08 12.6 0.2 1.2 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus DUF3566 PF12089.8 gi|88603550|ref|YP_503728.1| - 0.064 13.6 6.6 0.32 11.4 6.6 2.0 1 1 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) PMT_2 PF13231.6 gi|88603550|ref|YP_503728.1| - 1.1 9.5 7.6 2.6 8.2 1.5 2.1 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase MCR_C PF04609.12 gi|88603551|ref|YP_503729.1| - 5.1e-123 409.4 1.7 5.9e-123 409.2 1.7 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|88603552|ref|YP_503730.1| - 1.2e-61 207.3 0.0 1.5e-61 207.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Flavi_NS1 PF00948.21 gi|88603552|ref|YP_503730.1| - 0.11 11.3 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Flavivirus non-structural Protein NS1 BcrAD_BadFG PF01869.20 gi|88603553|ref|YP_503731.1| - 2.1e-58 197.9 4.8 2.8e-58 197.5 4.8 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|88603553|ref|YP_503731.1| - 0.0067 16.8 0.1 0.061 13.8 0.1 2.5 2 1 0 2 2 2 1 Cell division protein FtsA FGGY_C PF02782.16 gi|88603553|ref|YP_503731.1| - 0.019 14.7 0.6 0.059 13.1 0.4 1.9 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Peptidase_M22 PF00814.25 gi|88603553|ref|YP_503731.1| - 0.022 14.4 0.1 5.7 6.6 0.0 2.5 3 0 0 3 3 3 0 Glycoprotease family DUF2112 PF09885.9 gi|88603554|ref|YP_503732.1| - 6.9e-64 214.2 0.0 7.9e-64 214.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|88603555|ref|YP_503733.1| - 1.5e-40 137.1 0.0 1.9e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) ABC_tran PF00005.27 gi|88603557|ref|YP_503735.1| - 1.7e-51 174.4 0.0 1.3e-26 93.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|88603557|ref|YP_503735.1| - 4.1e-08 32.9 0.9 0.0042 16.6 0.0 3.9 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|88603557|ref|YP_503735.1| - 1.8e-06 27.9 0.2 0.081 12.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|88603557|ref|YP_503735.1| - 0.00031 20.4 0.7 0.44 10.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|88603557|ref|YP_503735.1| - 0.00065 19.4 0.0 0.63 9.7 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 gi|88603557|ref|YP_503735.1| - 0.001 19.0 1.8 1.2 9.1 0.0 2.9 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_21 PF13304.6 gi|88603557|ref|YP_503735.1| - 0.001 18.9 6.2 1.4 8.7 0.1 3.3 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|88603557|ref|YP_503735.1| - 0.0011 19.5 2.0 0.18 12.3 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|88603557|ref|YP_503735.1| - 0.0014 18.4 0.2 2 8.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|88603557|ref|YP_503735.1| - 0.0014 18.9 3.7 0.94 9.7 0.0 3.0 4 0 0 4 4 2 2 AAA domain PRK PF00485.18 gi|88603557|ref|YP_503735.1| - 0.0027 17.5 0.0 0.81 9.4 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family PhoH PF02562.16 gi|88603557|ref|YP_503735.1| - 0.0027 17.2 0.6 2 7.8 0.2 2.8 2 1 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.22 gi|88603557|ref|YP_503735.1| - 0.004 16.4 3.5 1.2 8.3 0.1 2.6 2 1 0 2 2 2 2 NB-ARC domain PduV-EutP PF10662.9 gi|88603557|ref|YP_503735.1| - 0.0052 16.5 0.5 2.4 7.9 0.1 3.1 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|88603557|ref|YP_503735.1| - 0.0053 17.2 0.5 5 7.5 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|88603557|ref|YP_503735.1| - 0.0086 14.8 0.0 0.76 8.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|88603557|ref|YP_503735.1| - 0.01 16.0 0.4 1.4 9.1 0.0 3.3 3 1 0 3 3 2 0 AAA domain TsaE PF02367.17 gi|88603557|ref|YP_503735.1| - 0.015 15.3 0.1 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|88603557|ref|YP_503735.1| - 0.019 15.5 0.7 0.84 10.2 0.1 3.0 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|88603557|ref|YP_503735.1| - 0.021 14.9 0.6 9 6.4 0.1 3.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|88603557|ref|YP_503735.1| - 0.024 14.4 0.5 6.4 6.5 0.0 3.3 3 1 0 3 3 3 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|88603557|ref|YP_503735.1| - 0.025 14.7 1.6 4.5 7.3 0.1 3.1 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|88603557|ref|YP_503735.1| - 0.038 13.7 0.6 2.2 7.9 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88603557|ref|YP_503735.1| - 0.043 14.0 1.4 1.1 9.4 0.1 3.2 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|88603557|ref|YP_503735.1| - 0.14 11.4 0.0 3.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.19 gi|88603557|ref|YP_503735.1| - 0.45 10.1 3.0 11 5.5 0.1 3.4 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|88603557|ref|YP_503735.1| - 0.49 10.3 3.4 18 5.2 0.1 2.8 3 0 0 3 3 2 0 NACHT domain zf-FPG_IleRS PF06827.14 gi|88603557|ref|YP_503735.1| - 0.68 9.8 4.7 0.67 9.9 0.8 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS AAA PF00004.29 gi|88603557|ref|YP_503735.1| - 0.87 10.0 3.3 9 6.7 1.2 3.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Hydrolase PF00702.26 gi|88603558|ref|YP_503736.1| - 1e-19 71.7 0.3 1e-18 68.4 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|88603558|ref|YP_503736.1| - 1.3e-05 25.4 0.1 6.8e-05 23.0 0.1 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88603558|ref|YP_503736.1| - 6.8e-05 23.3 0.3 0.00023 21.6 0.0 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|88603558|ref|YP_503736.1| - 0.00028 20.6 0.1 0.00053 19.6 0.1 1.5 1 1 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_3 PF08282.12 gi|88603558|ref|YP_503736.1| - 0.014 15.1 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|88603558|ref|YP_503736.1| - 0.045 13.9 0.0 0.63 10.2 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DDE_5 PF13546.6 gi|88603559|ref|YP_503737.1| - 1.6e-15 57.2 0.0 5e-15 55.6 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88603559|ref|YP_503737.1| - 2.8e-12 46.7 0.8 4.5e-12 46.1 0.8 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88603559|ref|YP_503737.1| - 3.5e-05 23.2 0.0 5.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 IF-2B PF01008.17 gi|88603560|ref|YP_503738.1| - 5.5e-82 275.1 0.6 6.3e-82 275.0 0.6 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family TetR_C_14 PF17754.1 gi|88603560|ref|YP_503738.1| - 0.1 12.5 1.6 0.47 10.4 0.3 2.2 2 0 0 2 2 2 0 MftR C-terminal domain RuBisCO_large PF00016.20 gi|88603561|ref|YP_503739.1| - 1.1e-87 294.1 0.2 1.8e-87 293.3 0.2 1.4 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|88603561|ref|YP_503739.1| - 9.3e-26 90.4 0.0 8.6e-25 87.2 0.0 2.1 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain SesA PF17107.5 gi|88603561|ref|YP_503739.1| - 0.15 12.3 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DAP_epimerase PF01678.19 gi|88603562|ref|YP_503740.1| - 2.9e-54 182.4 0.0 3.8e-28 98.1 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|88603562|ref|YP_503740.1| - 8e-05 22.2 0.0 0.00017 21.2 0.0 1.3 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein YwiC PF14256.6 gi|88603563|ref|YP_503741.1| - 0.034 14.4 0.7 0.034 14.4 0.7 2.8 2 1 1 3 3 3 0 YwiC-like protein TPR_1 PF00515.28 gi|88603564|ref|YP_503742.1| - 1.2e-45 151.5 2.7 8.4e-08 31.7 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603564|ref|YP_503742.1| - 1.1e-43 143.8 0.5 4.7e-06 26.3 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603564|ref|YP_503742.1| - 1.1e-32 109.5 4.5 1.3e-05 25.0 0.3 7.0 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603564|ref|YP_503742.1| - 1.7e-26 91.6 0.2 0.00031 20.4 0.1 6.1 3 1 3 6 6 6 6 TPR repeat TPR_19 PF14559.6 gi|88603564|ref|YP_503742.1| - 4e-24 84.9 0.0 3.4e-09 37.1 0.0 4.2 1 1 3 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603564|ref|YP_503742.1| - 7.1e-23 79.3 0.0 0.0011 19.6 0.1 6.3 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603564|ref|YP_503742.1| - 9.4e-23 80.6 0.0 2.8e-07 31.1 0.1 4.1 2 2 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603564|ref|YP_503742.1| - 7.6e-22 76.1 0.8 0.0041 17.4 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603564|ref|YP_503742.1| - 2.2e-21 75.9 0.0 3.8e-05 23.9 0.0 5.6 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603564|ref|YP_503742.1| - 5.3e-18 63.6 0.1 0.13 12.4 0.0 6.6 6 1 1 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603564|ref|YP_503742.1| - 3.6e-17 62.3 0.0 0.00021 21.4 0.0 4.0 1 1 3 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603564|ref|YP_503742.1| - 3.3e-16 59.3 0.4 7.9e-07 29.2 0.0 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88603564|ref|YP_503742.1| - 3.7e-15 55.5 0.0 0.037 14.7 0.0 6.2 7 0 0 7 7 6 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603564|ref|YP_503742.1| - 4e-08 33.2 0.1 0.03 14.4 0.0 4.6 3 1 2 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|88603564|ref|YP_503742.1| - 8e-08 31.9 0.1 0.51 10.3 0.1 5.6 6 0 0 6 6 6 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88603564|ref|YP_503742.1| - 1.1e-07 31.8 0.3 0.0025 17.8 0.3 2.3 1 1 0 2 2 2 2 Putative TPR-like repeat Paf67 PF10255.9 gi|88603564|ref|YP_503742.1| - 5e-07 29.1 0.3 0.46 9.4 0.0 3.4 1 1 2 3 3 3 3 RNA polymerase I-associated factor PAF67 MIT PF04212.18 gi|88603564|ref|YP_503742.1| - 2.5e-05 24.3 0.5 4.7 7.3 0.0 4.8 6 0 0 6 6 5 1 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|88603564|ref|YP_503742.1| - 5.2e-05 22.4 0.6 0.7 8.7 0.1 3.4 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|88603564|ref|YP_503742.1| - 0.00011 21.5 0.0 0.084 12.1 0.0 2.4 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88603564|ref|YP_503742.1| - 0.00023 21.4 0.1 4.5 7.7 0.0 3.4 2 1 2 4 4 4 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|88603564|ref|YP_503742.1| - 0.00046 19.9 0.4 5.9 6.6 0.1 4.3 1 1 3 4 4 4 0 26S proteasome subunit RPN7 DUF3856 PF12968.7 gi|88603564|ref|YP_503742.1| - 0.00061 19.9 0.1 4.7 7.3 0.0 4.0 2 1 3 5 5 5 1 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.14 gi|88603564|ref|YP_503742.1| - 0.00089 18.7 4.0 0.6 9.5 0.2 3.1 1 1 1 3 3 3 2 Coatomer epsilon subunit PknG_TPR PF16918.5 gi|88603564|ref|YP_503742.1| - 0.0011 17.7 0.0 0.48 9.1 0.0 2.3 2 0 0 2 2 2 2 Protein kinase G tetratricopeptide repeat DUF3808 PF10300.9 gi|88603564|ref|YP_503742.1| - 0.0015 17.4 0.2 0.014 14.2 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF3808) BTAD PF03704.17 gi|88603564|ref|YP_503742.1| - 0.0024 18.3 0.0 8.6 6.8 0.0 3.1 2 1 1 3 3 3 0 Bacterial transcriptional activator domain TPR_3 PF07720.12 gi|88603564|ref|YP_503742.1| - 0.0064 16.5 0.5 12 6.1 0.0 3.6 4 0 0 4 4 3 0 Tetratricopeptide repeat PPR PF01535.20 gi|88603564|ref|YP_503742.1| - 0.0076 16.4 6.7 4.1 7.9 0.0 5.6 7 0 0 7 7 6 1 PPR repeat YfiO PF13525.6 gi|88603564|ref|YP_503742.1| - 0.035 13.8 0.1 1.6 8.4 0.0 2.4 2 1 0 2 2 2 0 Outer membrane lipoprotein DUF627 PF04781.12 gi|88603564|ref|YP_503742.1| - 0.083 12.9 0.0 0.94 9.5 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF627) Alkyl_sulf_dimr PF14863.6 gi|88603564|ref|YP_503742.1| - 0.12 12.8 0.0 37 4.7 0.0 2.9 1 1 2 3 3 3 0 Alkyl sulfatase dimerisation Adenylsucc_synt PF00709.21 gi|88603565|ref|YP_503743.1| - 1.5e-78 264.6 3.4 1.5e-38 132.8 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Trm112p PF03966.16 gi|88603566|ref|YP_503744.1| - 5.8e-12 46.0 1.6 9.5e-12 45.3 1.6 1.4 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.6 gi|88603566|ref|YP_503744.1| - 0.014 15.8 0.7 0.016 15.6 0.7 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|88603566|ref|YP_503744.1| - 0.022 14.8 0.1 0.022 14.8 0.1 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.12 gi|88603566|ref|YP_503744.1| - 0.052 13.8 0.2 0.11 12.9 0.2 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase CobD_Cbib PF03186.13 gi|88603567|ref|YP_503745.1| - 2.5e-78 263.1 0.0 3.1e-78 262.8 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DoxX_2 PF13564.6 gi|88603567|ref|YP_503745.1| - 0.034 14.2 1.3 0.15 12.2 1.3 2.1 2 0 0 2 2 2 0 DoxX-like family SOR_SNZ PF01680.17 gi|88603568|ref|YP_503746.1| - 5.1e-106 353.0 9.6 7.9e-106 352.4 9.6 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|88603568|ref|YP_503746.1| - 4.1e-10 39.4 9.1 1.5e-07 31.0 0.3 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|88603568|ref|YP_503746.1| - 0.00057 19.1 1.0 0.09 11.8 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|88603568|ref|YP_503746.1| - 0.0029 16.8 0.7 0.048 12.8 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|88603568|ref|YP_503746.1| - 0.0076 15.4 0.7 0.18 10.9 0.0 2.5 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|88603568|ref|YP_503746.1| - 0.011 15.7 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain His_biosynth PF00977.21 gi|88603568|ref|YP_503746.1| - 0.05 13.1 0.9 0.51 9.8 0.0 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein NMO PF03060.15 gi|88603568|ref|YP_503746.1| - 0.084 12.2 5.2 0.13 11.6 0.1 2.3 2 0 0 2 2 2 0 Nitronate monooxygenase Chaperone_III PF07824.12 gi|88603568|ref|YP_503746.1| - 0.15 12.3 0.0 0.88 9.8 0.0 2.1 2 0 0 2 2 2 0 Type III secretion chaperone domain SNO PF01174.19 gi|88603569|ref|YP_503747.1| - 4.2e-51 173.5 0.0 5.2e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|88603569|ref|YP_503747.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 His_Phos_1 PF00300.22 gi|88603570|ref|YP_503748.1| - 8.8e-36 123.4 0.1 2.3e-29 102.5 0.2 2.1 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) CARDB PF07705.11 gi|88603571|ref|YP_503749.1| - 1.6e-14 54.0 0.0 2.1e-11 44.0 0.0 2.2 2 0 0 2 2 2 2 CARDB DUF11 PF01345.18 gi|88603571|ref|YP_503749.1| - 0.035 14.4 2.0 0.63 10.4 0.2 2.8 1 1 1 2 2 2 0 Domain of unknown function DUF11 SSF PF00474.17 gi|88603572|ref|YP_503750.1| - 4.6e-54 183.8 42.9 6.3e-54 183.4 42.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family FrhB_FdhB_C PF04432.13 gi|88603574|ref|YP_503752.1| - 3.7e-42 143.8 0.0 5e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88603574|ref|YP_503752.1| - 1.2e-30 105.5 0.0 1.9e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|88603575|ref|YP_503753.1| - 1.1e-25 90.0 2.1 1.1e-25 90.0 2.1 2.2 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|88603575|ref|YP_503753.1| - 1.4e-13 50.0 14.6 3.3e-07 29.8 1.9 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603575|ref|YP_503753.1| - 3.9e-10 39.7 7.7 3.9e-10 39.7 7.7 3.4 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603575|ref|YP_503753.1| - 1.4e-08 34.5 10.4 2.7e-06 27.2 2.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88603575|ref|YP_503753.1| - 1.2e-07 31.8 10.7 1.2e-07 31.8 10.7 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603575|ref|YP_503753.1| - 1.2e-07 32.2 13.0 1.2e-07 32.2 13.0 3.2 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603575|ref|YP_503753.1| - 2.5e-05 24.1 13.4 0.00076 19.4 2.7 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603575|ref|YP_503753.1| - 3.2e-05 24.0 11.3 0.00035 20.7 0.6 3.8 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603575|ref|YP_503753.1| - 4.7e-05 23.8 11.6 0.015 15.9 3.7 3.0 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|88603575|ref|YP_503753.1| - 0.00013 22.2 10.2 0.00059 20.1 1.5 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603575|ref|YP_503753.1| - 0.00036 21.4 9.7 0.0033 18.3 1.5 3.2 3 1 1 4 4 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|88603575|ref|YP_503753.1| - 0.0005 20.5 16.7 0.0086 16.5 0.4 3.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88603575|ref|YP_503753.1| - 0.045 14.0 7.1 0.1 12.8 7.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603575|ref|YP_503753.1| - 0.064 13.8 1.7 0.064 13.8 1.7 3.4 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603575|ref|YP_503753.1| - 0.17 12.6 0.8 0.17 12.6 0.8 3.6 3 2 1 4 4 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|88603575|ref|YP_503753.1| - 1.2 10.1 19.9 1.8 9.4 5.0 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|88603575|ref|YP_503753.1| - 3.2 7.7 10.4 1.8 8.6 1.5 3.2 3 0 0 3 3 3 0 Six-cysteine peptide SCIFF HycI PF01750.18 gi|88603576|ref|YP_503754.1| - 1.7e-30 105.5 0.0 2.2e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|88603577|ref|YP_503755.1| - 1.7e-33 116.3 8.3 1.6e-15 57.0 0.9 4.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|88603577|ref|YP_503755.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF86 PF01934.17 gi|88603578|ref|YP_503756.1| - 3.6e-06 26.8 0.6 5.2e-06 26.3 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 HEPN_RiboL-PSP PF18735.1 gi|88603578|ref|YP_503756.1| - 0.043 13.7 0.4 0.21 11.5 0.2 1.8 1 1 0 2 2 2 0 RiboL-PSP-HEPN DUF4145 PF13643.6 gi|88603578|ref|YP_503756.1| - 0.06 13.5 0.0 0.093 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) HEPN_MAE_28990 PF18737.1 gi|88603578|ref|YP_503756.1| - 0.076 12.9 0.1 0.89 9.4 0.0 1.9 1 1 1 2 2 2 0 MAE_28990/MAE_18760-like HEPN DUF805 PF05656.14 gi|88603578|ref|YP_503756.1| - 0.5 10.8 2.2 1.9 8.9 2.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF805) GCHY-1 PF02649.14 gi|88603579|ref|YP_503757.1| - 1.8e-79 266.9 0.7 2.1e-79 266.7 0.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|88603579|ref|YP_503757.1| - 0.0065 17.0 0.1 0.053 14.1 0.1 2.5 3 1 0 3 3 3 1 Dihydroneopterin aldolase RNA_lig_T4_1 PF09511.10 gi|88603579|ref|YP_503757.1| - 0.053 13.4 0.1 0.14 12.0 0.0 1.8 1 1 1 2 2 2 0 RNA ligase IMS_C PF11799.8 gi|88603579|ref|YP_503757.1| - 0.063 14.0 0.1 1.2 9.8 0.1 2.6 1 1 1 2 2 2 0 impB/mucB/samB family C-terminal domain eIF-5_eIF-2B PF01873.17 gi|88603580|ref|YP_503758.1| - 2.2e-37 127.5 0.0 3.2e-37 127.0 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|88603580|ref|YP_503758.1| - 1.4e-07 31.4 0.9 3.1e-07 30.3 0.9 1.5 1 0 0 1 1 1 1 TRAM domain zinc_ribbon_6 PF14599.6 gi|88603580|ref|YP_503758.1| - 0.055 13.5 0.3 0.1 12.6 0.3 1.4 1 0 0 1 1 1 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|88603580|ref|YP_503758.1| - 0.084 13.0 1.2 0.23 11.6 1.2 1.7 1 1 1 2 2 2 0 Zinc ribbon domain zf_C2H2_13 PF18508.1 gi|88603580|ref|YP_503758.1| - 0.086 12.4 0.6 0.67 9.6 0.0 2.4 2 0 0 2 2 2 0 Zinc finger domain ZF-HD_dimer PF04770.12 gi|88603580|ref|YP_503758.1| - 0.097 13.0 0.9 0.21 11.9 1.0 1.6 1 1 0 1 1 1 0 ZF-HD protein dimerisation region zf-ribbon_3 PF13248.6 gi|88603580|ref|YP_503758.1| - 0.19 11.2 1.1 3.4 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|88603580|ref|YP_503758.1| - 1.5 8.8 3.8 0.91 9.5 0.5 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-RanBP PF00641.18 gi|88603580|ref|YP_503758.1| - 1.7 8.1 3.4 0.73 9.2 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others RNA_pol_L_2 PF13656.6 gi|88603581|ref|YP_503759.1| - 1.4e-14 53.6 0.0 1.7e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|88603581|ref|YP_503759.1| - 2.1e-05 23.9 0.0 3.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Phage_cap_E PF03864.15 gi|88603581|ref|YP_503759.1| - 0.044 13.0 0.0 0.05 12.8 0.0 1.0 1 0 0 1 1 1 0 Phage major capsid protein E Focal_AT PF03623.13 gi|88603581|ref|YP_503759.1| - 0.065 13.2 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Focal adhesion targeting region Lactamase_B_2 PF12706.7 gi|88603582|ref|YP_503760.1| - 2e-28 99.3 0.0 2.5e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88603582|ref|YP_503760.1| - 1.2e-12 48.3 0.9 2.3e-12 47.3 0.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|88603582|ref|YP_503760.1| - 0.0015 18.4 0.0 0.0036 17.2 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|88603583|ref|YP_503761.1| - 3.8e-34 118.0 0.0 8.4e-34 116.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|88603583|ref|YP_503761.1| - 1.1e-13 50.7 0.2 2.3e-13 49.7 0.2 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|88603583|ref|YP_503761.1| - 0.00011 22.2 0.1 0.0004 20.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|88603583|ref|YP_503761.1| - 0.00036 20.3 0.0 0.001 18.9 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|88603583|ref|YP_503761.1| - 0.0021 18.6 0.0 0.01 16.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|88603583|ref|YP_503761.1| - 0.0022 18.3 0.7 0.85 9.9 0.1 3.1 1 1 2 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|88603583|ref|YP_503761.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|88603583|ref|YP_503761.1| - 0.0076 15.7 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|88603583|ref|YP_503761.1| - 0.0076 16.6 1.3 0.25 11.7 0.1 2.9 1 1 1 3 3 3 1 AAA ATPase domain AAA_33 PF13671.6 gi|88603583|ref|YP_503761.1| - 0.023 14.8 0.0 0.053 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|88603583|ref|YP_503761.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|88603583|ref|YP_503761.1| - 0.038 13.2 0.0 0.068 12.4 0.0 1.4 1 1 0 1 1 1 0 TIP49 P-loop domain AAA_28 PF13521.6 gi|88603583|ref|YP_503761.1| - 0.048 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|88603583|ref|YP_503761.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|88603583|ref|YP_503761.1| - 0.074 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|88603583|ref|YP_503761.1| - 0.075 13.1 0.0 0.2 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Zemlya PF17646.1 gi|88603583|ref|YP_503761.1| - 0.089 13.2 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Closterovirus 1a polyprotein central region AAA_25 PF13481.6 gi|88603583|ref|YP_503761.1| - 0.097 12.2 0.6 0.55 9.8 0.0 2.3 2 1 1 3 3 3 0 AAA domain DUF815 PF05673.13 gi|88603583|ref|YP_503761.1| - 0.13 11.5 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_29 PF13555.6 gi|88603583|ref|YP_503761.1| - 0.17 11.7 0.0 0.56 10.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain Peptidase_M24 PF00557.24 gi|88603584|ref|YP_503762.1| - 1.5e-39 135.8 0.0 1.8e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|88603585|ref|YP_503763.1| - 6.7e-40 137.0 1.0 7.7e-40 136.8 0.3 1.4 2 0 0 2 2 2 1 Metallopeptidase family M24 HTH_12 PF08461.10 gi|88603586|ref|YP_503764.1| - 0.0014 18.5 0.0 0.0032 17.4 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|88603586|ref|YP_503764.1| - 0.0015 18.3 0.2 0.0032 17.3 0.2 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|88603586|ref|YP_503764.1| - 0.0019 18.1 0.1 0.0025 17.7 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|88603586|ref|YP_503764.1| - 0.0022 17.9 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|88603586|ref|YP_503764.1| - 0.0022 17.5 0.1 0.0032 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|88603586|ref|YP_503764.1| - 0.0028 17.5 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|88603586|ref|YP_503764.1| - 0.011 15.8 0.1 0.087 12.9 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|88603586|ref|YP_503764.1| - 0.018 15.3 0.1 0.034 14.5 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|88603586|ref|YP_503764.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|88603586|ref|YP_503764.1| - 0.021 14.6 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Ribosomal_S19e PF01090.19 gi|88603586|ref|YP_503764.1| - 0.043 13.5 0.0 0.65 9.7 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S19e MTS PF05175.14 gi|88603587|ref|YP_503765.1| - 0.0017 17.9 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|88603587|ref|YP_503765.1| - 0.021 14.2 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|88603587|ref|YP_503765.1| - 0.17 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ldh_1_N PF00056.23 gi|88603588|ref|YP_503766.1| - 4.9e-34 117.4 0.1 7.1e-34 116.9 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|88603588|ref|YP_503766.1| - 2.3e-20 73.2 0.0 3.2e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.24 gi|88603588|ref|YP_503766.1| - 6.7e-05 23.3 0.0 0.00013 22.4 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DUF1512 PF07431.12 gi|88603588|ref|YP_503766.1| - 0.0029 16.7 0.0 0.004 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Glyco_hydro_4 PF02056.16 gi|88603588|ref|YP_503766.1| - 0.0072 15.9 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|88603588|ref|YP_503766.1| - 0.098 12.7 0.0 0.23 11.5 0.1 1.6 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase C-terminal domain EF1_GNE PF00736.19 gi|88603589|ref|YP_503767.1| - 1.6e-15 57.0 0.7 1.8e-15 56.9 0.7 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|88603590|ref|YP_503768.1| - 8.9e-10 38.4 11.4 4.3e-06 26.6 7.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) Auto_anti-p27 PF06677.12 gi|88603590|ref|YP_503768.1| - 0.0064 16.6 1.3 0.0064 16.6 1.3 2.3 2 1 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|88603590|ref|YP_503768.1| - 0.007 15.9 11.7 0.71 9.4 0.2 2.7 1 1 1 2 2 2 2 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|88603590|ref|YP_503768.1| - 0.012 15.6 8.9 0.1 12.6 9.1 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|88603590|ref|YP_503768.1| - 0.016 15.3 8.5 0.98 9.6 3.8 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CHY PF05495.12 gi|88603590|ref|YP_503768.1| - 0.021 15.3 8.4 0.23 12.0 8.5 2.0 1 1 0 1 1 1 0 CHY zinc finger Prok-RING_1 PF14446.6 gi|88603590|ref|YP_503768.1| - 0.023 14.6 3.6 0.023 14.6 3.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_10 PF10058.9 gi|88603590|ref|YP_503768.1| - 0.026 14.2 10.7 0.21 11.3 0.7 2.7 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein FYVE_2 PF02318.16 gi|88603590|ref|YP_503768.1| - 0.043 14.0 3.1 0.052 13.8 3.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger PolC_DP2 PF03833.13 gi|88603590|ref|YP_503768.1| - 0.076 10.9 4.4 0.087 10.7 4.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Rhodanese_C PF12368.8 gi|88603590|ref|YP_503768.1| - 0.081 13.3 6.2 0.092 13.1 6.2 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zf-ribbon_3 PF13248.6 gi|88603590|ref|YP_503768.1| - 0.24 10.9 11.7 3.2 7.3 0.1 3.4 3 1 0 3 3 3 0 zinc-ribbon domain DUF1272 PF06906.11 gi|88603590|ref|YP_503768.1| - 0.25 11.5 11.1 5.2 7.2 11.1 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|88603590|ref|YP_503768.1| - 0.32 11.1 15.0 3.2 7.9 8.9 3.2 1 1 2 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|88603590|ref|YP_503768.1| - 0.38 10.5 9.1 4.6 7.1 0.1 3.3 2 1 1 3 3 3 0 A2L zinc ribbon domain HypA PF01155.19 gi|88603590|ref|YP_503768.1| - 0.49 10.4 10.7 20 5.2 10.7 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Acetone_carb_G PF08882.11 gi|88603590|ref|YP_503768.1| - 0.66 10.1 3.8 6.4 7.0 0.5 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit NRDD PF13597.6 gi|88603590|ref|YP_503768.1| - 0.68 8.6 9.0 0.33 9.7 0.3 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin PF00301.20 gi|88603590|ref|YP_503768.1| - 0.74 9.9 6.9 7.9 6.6 0.5 2.8 3 1 0 3 3 3 0 Rubredoxin Nudix_N_2 PF14803.6 gi|88603590|ref|YP_503768.1| - 1.1 9.2 12.8 10 6.1 7.7 2.6 2 1 0 2 2 2 0 Nudix N-terminal C1_1 PF00130.22 gi|88603590|ref|YP_503768.1| - 1.6 8.7 8.3 13 5.7 8.3 2.1 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|88603590|ref|YP_503768.1| - 2.3 8.2 10.4 0.66 9.9 4.8 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|88603590|ref|YP_503768.1| - 4.3 7.5 12.5 4.4 7.5 0.1 3.7 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_recom PF13408.6 gi|88603590|ref|YP_503768.1| - 4.6 7.8 10.6 2.8 8.5 5.9 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf_UBZ PF18439.1 gi|88603590|ref|YP_503768.1| - 5.7 6.6 10.9 16 5.1 0.1 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS91 PF14319.6 gi|88603590|ref|YP_503768.1| - 6 7.0 10.6 25 5.0 10.5 1.8 1 1 1 2 2 2 0 Transposase zinc-binding domain DUF2752 PF10825.8 gi|88603590|ref|YP_503768.1| - 6.8 6.8 9.3 9.1 6.4 1.2 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) DUF2072 PF09845.9 gi|88603590|ref|YP_503768.1| - 7.5 6.8 10.6 2.6 8.3 4.5 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-HIT PF04438.16 gi|88603590|ref|YP_503768.1| - 8 6.4 15.6 1.5e+02 2.4 9.8 3.3 2 1 0 2 2 2 0 HIT zinc finger AA_kinase PF00696.28 gi|88603591|ref|YP_503769.1| - 4.1e-06 26.6 0.1 0.057 13.0 0.0 2.1 2 0 0 2 2 2 2 Amino acid kinase family GntP_permease PF02447.16 gi|88603591|ref|YP_503769.1| - 0.13 11.0 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 GntP family permease PLDc_2 PF13091.6 gi|88603592|ref|YP_503770.1| - 4.3e-37 127.0 0.0 2.4e-19 69.6 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|88603592|ref|YP_503770.1| - 2.1e-06 27.7 0.3 0.0048 17.0 0.2 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|88603592|ref|YP_503770.1| - 0.078 12.1 0.0 0.79 8.9 0.0 2.1 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB DsbD PF02683.15 gi|88603593|ref|YP_503771.1| - 3.6e-10 40.1 22.5 4.7e-10 39.7 22.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.21 gi|88603594|ref|YP_503772.1| - 6.8e-09 35.7 0.0 9.4e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|88603594|ref|YP_503772.1| - 6.8e-06 25.9 0.0 8.4e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|88603594|ref|YP_503772.1| - 4.9e-05 23.3 0.0 0.00011 22.2 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|88603594|ref|YP_503772.1| - 0.0013 19.1 0.0 0.002 18.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|88603594|ref|YP_503772.1| - 0.0019 18.6 0.0 0.0025 18.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|88603594|ref|YP_503772.1| - 0.0026 17.9 0.0 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like GntP_permease PF02447.16 gi|88603595|ref|YP_503773.1| - 5.3e-24 84.7 23.6 9.4e-22 77.3 23.6 2.1 1 1 0 1 1 1 1 GntP family permease DUF969 PF06149.12 gi|88603595|ref|YP_503773.1| - 0.19 11.1 5.8 1.1 8.6 1.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF969) DUF4083 PF13314.6 gi|88603595|ref|YP_503773.1| - 1 9.3 3.2 3.8 7.5 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF1129 PF06570.11 gi|88603595|ref|YP_503773.1| - 1.2 8.6 13.2 1.4 8.4 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) Saf_2TM PF18303.1 gi|88603595|ref|YP_503773.1| - 1.3 8.6 5.7 3.3 7.3 0.1 3.4 2 2 1 3 3 3 0 SAVED-fused 2TM effector domain tRNA_anti-codon PF01336.25 gi|88603596|ref|YP_503774.1| - 0.0081 16.1 0.2 0.064 13.3 0.0 2.0 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain QRPTase_C PF01729.19 gi|88603597|ref|YP_503775.1| - 7.5e-48 162.5 0.9 9.7e-48 162.1 0.9 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|88603597|ref|YP_503775.1| - 8.4e-22 77.0 0.0 1.8e-21 76.0 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peripla_BP_6 PF13458.6 gi|88603597|ref|YP_503775.1| - 0.0054 16.4 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein F420_oxidored PF03807.17 gi|88603597|ref|YP_503775.1| - 0.081 13.5 0.1 0.16 12.6 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NadA PF02445.16 gi|88603598|ref|YP_503776.1| - 1.7e-102 342.6 0.0 1.9e-102 342.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF108 PF01958.18 gi|88603599|ref|YP_503777.1| - 4.4e-33 113.5 0.1 6.5e-33 113.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|88603599|ref|YP_503777.1| - 1.8e-16 60.8 0.0 3.4e-16 60.0 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|88603599|ref|YP_503777.1| - 2.1e-06 28.5 0.0 4.5e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|88603599|ref|YP_503777.1| - 0.0019 18.3 0.0 0.0041 17.2 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|88603599|ref|YP_503777.1| - 0.016 15.7 0.0 0.033 14.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Radical_SAM PF04055.21 gi|88603600|ref|YP_503778.1| - 7.7e-20 71.9 0.0 2.2e-19 70.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|88603600|ref|YP_503778.1| - 5.7e-17 61.6 0.0 1.3e-16 60.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 DUF3804 PF12707.7 gi|88603601|ref|YP_503779.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) DUF3488 PF11992.8 gi|88603602|ref|YP_503780.1| - 0.014 14.4 0.3 0.017 14.1 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF3098 PF11297.8 gi|88603602|ref|YP_503780.1| - 4.7 6.9 6.2 14 5.3 1.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) TPP_enzyme_C PF02775.21 gi|88603603|ref|YP_503781.1| - 5.2e-28 97.8 1.1 1e-27 96.8 1.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|88603603|ref|YP_503781.1| - 2.2e-10 39.9 12.2 1e-06 28.3 4.2 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain POR_N PF01855.19 gi|88603603|ref|YP_503781.1| - 6.1e-10 39.2 0.0 1.7e-09 37.8 0.0 1.8 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.7 gi|88603603|ref|YP_503781.1| - 3.1e-06 27.7 6.4 0.0045 17.6 0.9 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603603|ref|YP_503781.1| - 1.1e-05 25.5 12.4 0.00012 22.1 12.4 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603603|ref|YP_503781.1| - 2.4e-05 24.4 10.4 5e-05 23.4 9.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88603603|ref|YP_503781.1| - 8.2e-05 22.5 21.2 0.0016 18.4 1.7 3.5 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88603603|ref|YP_503781.1| - 0.00011 22.4 19.1 0.011 16.2 2.3 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603603|ref|YP_503781.1| - 0.00013 21.9 19.0 0.00063 19.7 3.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603603|ref|YP_503781.1| - 0.00086 20.2 7.4 0.011 16.7 1.7 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|88603603|ref|YP_503781.1| - 0.0016 18.5 17.6 0.0026 17.8 13.4 2.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|88603603|ref|YP_503781.1| - 0.07 12.7 0.3 0.26 10.9 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_13 PF13370.6 gi|88603603|ref|YP_503781.1| - 0.64 10.6 11.5 2.8 8.5 2.6 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|88603603|ref|YP_503781.1| - 0.73 10.3 11.9 0.68 10.4 1.6 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603603|ref|YP_503781.1| - 0.96 10.0 11.6 1.4 9.5 1.8 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|88603604|ref|YP_503782.1| - 2.1e-37 128.9 0.0 2.5e-37 128.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase HMGL-like PF00682.19 gi|88603605|ref|YP_503783.1| - 1.3e-74 251.1 6.0 1.3e-74 251.1 6.0 1.8 2 1 1 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|88603605|ref|YP_503783.1| - 2.1e-26 92.4 1.8 4.6e-26 91.3 1.8 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Aconitase PF00330.20 gi|88603606|ref|YP_503784.1| - 9.4e-96 321.6 2.4 9.3e-94 315.0 2.4 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|88603607|ref|YP_503785.1| - 7.2e-24 84.6 0.0 1.6e-22 80.2 0.1 2.0 1 1 1 2 2 2 2 Aconitase C-terminal domain Iso_dh PF00180.20 gi|88603608|ref|YP_503786.1| - 3.3e-96 322.5 0.0 3.8e-96 322.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase APH PF01636.23 gi|88603609|ref|YP_503787.1| - 9.1e-22 78.1 0.0 2.8e-21 76.6 0.0 1.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|88603609|ref|YP_503787.1| - 1.7e-06 27.7 0.1 0.013 15.1 0.1 2.2 2 0 0 2 2 2 2 RIO1 family APH_6_hur PF04655.14 gi|88603609|ref|YP_503787.1| - 1.1e-05 25.0 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase DUF1679 PF07914.11 gi|88603609|ref|YP_503787.1| - 8.8e-05 21.5 0.0 0.0016 17.3 0.0 2.0 1 1 0 2 2 2 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|88603609|ref|YP_503787.1| - 0.0045 16.3 0.0 0.014 14.7 0.0 1.7 2 0 0 2 2 2 1 Ecdysteroid kinase DUF308 PF03729.13 gi|88603610|ref|YP_503788.1| - 0.0058 16.9 10.3 0.0058 16.9 10.3 7.2 5 3 1 6 6 6 2 Short repeat of unknown function (DUF308) ADC PF06314.11 gi|88603611|ref|YP_503789.1| - 1.1e-47 162.6 0.1 1.3e-47 162.3 0.1 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.25 gi|88603612|ref|YP_503790.1| - 6.2e-53 179.2 0.0 7.9e-53 178.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|88603612|ref|YP_503790.1| - 4.7e-41 140.9 0.1 6.1e-41 140.5 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|88603612|ref|YP_503790.1| - 7.7e-18 65.0 0.2 1.2e-17 64.4 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|88603612|ref|YP_503790.1| - 4.8e-07 29.5 0.1 6.3e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88603612|ref|YP_503790.1| - 0.00035 20.1 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|88603612|ref|YP_503790.1| - 0.023 13.8 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF1776 PF08643.10 gi|88603612|ref|YP_503790.1| - 0.039 13.3 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) RmlD_sub_bind PF04321.17 gi|88603612|ref|YP_503790.1| - 0.072 12.2 0.3 0.53 9.3 0.1 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain adh_short PF00106.25 gi|88603613|ref|YP_503791.1| - 3.2e-52 176.9 0.1 3.8e-52 176.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|88603613|ref|YP_503791.1| - 8.8e-38 130.2 0.1 1.2e-37 129.8 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|88603613|ref|YP_503791.1| - 1.2e-16 61.1 0.1 1.9e-16 60.5 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|88603613|ref|YP_503791.1| - 2.6e-07 30.4 0.1 7.1e-07 28.9 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88603613|ref|YP_503791.1| - 0.022 14.2 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Cas1_AcylT PF07779.12 gi|88603613|ref|YP_503791.1| - 0.19 10.6 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 10 TM Acyl Transferase domain found in Cas1p DDE_Tnp_1 PF01609.21 gi|88603614|ref|YP_503792.1| - 1e-06 28.6 0.4 1.6e-06 27.9 0.4 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF2080 PF09853.9 gi|88603615|ref|YP_503793.1| - 2.4e-15 56.0 0.2 2.5e-15 55.9 0.2 1.0 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) DUF4277 PF14104.6 gi|88603616|ref|YP_503794.1| - 2.2e-22 79.5 0.0 2.5e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) RNA_pol_Rpb1_2 PF00623.20 gi|88603616|ref|YP_503794.1| - 0.053 13.7 0.0 0.058 13.6 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 2 Methyltransf_23 PF13489.6 gi|88603617|ref|YP_503795.1| - 4.5e-16 59.1 0.0 6.2e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88603617|ref|YP_503795.1| - 3.8e-13 49.9 0.0 2.6e-11 44.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88603617|ref|YP_503795.1| - 4.2e-09 36.4 0.0 3.2e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88603617|ref|YP_503795.1| - 7.5e-08 33.0 0.0 4.7e-05 24.0 0.0 2.3 1 1 1 2 2 2 2 Methyltransferase domain MetW PF07021.12 gi|88603617|ref|YP_503795.1| - 1.1e-06 28.4 0.0 0.00034 20.3 0.0 2.2 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|88603617|ref|YP_503795.1| - 9.3e-06 26.3 0.0 0.00019 22.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88603617|ref|YP_503795.1| - 0.023 14.0 0.0 0.052 12.9 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|88603617|ref|YP_503795.1| - 0.057 12.5 0.0 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_9 PF08003.11 gi|88603617|ref|YP_503795.1| - 0.11 11.4 0.0 0.64 8.9 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_23 PF13489.6 gi|88603618|ref|YP_503796.1| - 2.7e-06 27.3 0.1 3.7e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|88603619|ref|YP_503797.1| - 4.3e-23 81.7 0.0 7.5e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88603619|ref|YP_503797.1| - 7.2e-16 58.8 0.0 1.2e-15 58.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|88603619|ref|YP_503797.1| - 2.2e-06 27.9 0.0 4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Ac110_PIF PF07280.11 gi|88603619|ref|YP_503797.1| - 0.075 12.8 0.9 0.25 11.2 0.9 1.9 1 0 0 1 1 1 0 Per os infectivity factor AC110 Polysacc_synt_3 PF13440.6 gi|88603620|ref|YP_503798.1| - 6.8e-18 64.9 4.5 6.8e-18 64.9 4.5 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|88603620|ref|YP_503798.1| - 3.8e-11 42.9 13.1 3.8e-11 42.9 13.1 3.4 2 2 0 3 3 3 1 Polysaccharide biosynthesis protein Na_Pi_cotrans PF02690.15 gi|88603621|ref|YP_503799.1| - 0.0046 17.1 0.1 0.0069 16.5 0.1 1.2 1 0 0 1 1 1 1 Na+/Pi-cotransporter CCG PF02754.16 gi|88603623|ref|YP_503801.1| - 1.5e-05 25.1 13.7 0.024 14.9 0.0 3.3 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_9 PF13187.6 gi|88603623|ref|YP_503801.1| - 0.00081 19.5 8.3 0.00081 19.5 8.3 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88603623|ref|YP_503801.1| - 0.0074 16.4 11.2 0.0074 16.4 11.2 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603623|ref|YP_503801.1| - 0.0077 16.7 7.2 0.0077 16.7 7.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603623|ref|YP_503801.1| - 0.031 14.9 7.5 0.031 14.9 7.5 3.2 3 2 0 3 3 3 0 4Fe-4S dicluster domain NIR_SIR_ferr PF03460.17 gi|88603623|ref|YP_503801.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain Putative_PNPOx PF01243.20 gi|88603624|ref|YP_503802.1| - 1.6e-07 31.4 0.0 2.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase BPL_C PF02237.17 gi|88603625|ref|YP_503803.1| - 0.011 15.7 0.0 0.3 11.0 0.2 2.4 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain Fer4 PF00037.27 gi|88603626|ref|YP_503804.1| - 2.1e-12 46.3 14.4 8.5e-07 28.5 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603626|ref|YP_503804.1| - 1.8e-11 44.4 9.5 2.8e-11 43.8 9.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603626|ref|YP_503804.1| - 2.6e-11 43.1 11.9 2.2e-05 24.3 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88603626|ref|YP_503804.1| - 2.1e-10 40.1 12.6 6e-05 22.9 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603626|ref|YP_503804.1| - 6.4e-10 39.0 11.4 3.4e-05 23.9 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88603626|ref|YP_503804.1| - 6.4e-09 36.6 8.4 0.00054 20.8 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|88603626|ref|YP_503804.1| - 8.3e-09 35.5 21.2 1.9e-06 28.0 12.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603626|ref|YP_503804.1| - 5.8e-08 32.8 11.5 2.6e-05 24.3 1.8 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603626|ref|YP_503804.1| - 1.2e-06 28.9 6.2 0.0045 17.4 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603626|ref|YP_503804.1| - 1.4e-05 25.6 9.2 0.00038 21.0 8.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|88603626|ref|YP_503804.1| - 0.00016 22.4 18.2 0.039 14.9 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88603626|ref|YP_503804.1| - 0.00023 21.8 5.3 0.11 13.2 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|88603626|ref|YP_503804.1| - 0.00028 21.2 14.7 0.015 15.7 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603626|ref|YP_503804.1| - 0.0012 19.7 13.7 0.16 12.8 3.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|88603626|ref|YP_503804.1| - 0.2 11.8 2.3 0.24 11.5 2.3 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|88603626|ref|YP_503804.1| - 0.41 11.2 14.0 0.37 11.4 3.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|88603626|ref|YP_503804.1| - 1.7 8.9 12.6 38 4.5 12.6 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain MCH PF02289.16 gi|88603627|ref|YP_503805.1| - 1.5e-117 392.4 0.0 1.7e-117 392.2 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) PAS_3 PF08447.12 gi|88603628|ref|YP_503806.1| - 7e-36 122.4 0.0 4.4e-19 68.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|88603628|ref|YP_503806.1| - 6.8e-31 106.6 0.0 7.7e-14 51.7 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88603628|ref|YP_503806.1| - 7.4e-28 96.9 1.5 1.9e-09 37.7 0.0 3.9 3 1 1 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|88603628|ref|YP_503806.1| - 9e-21 74.2 0.0 2.3e-09 37.5 0.0 3.4 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|88603628|ref|YP_503806.1| - 1.9e-18 66.7 0.0 6.4e-18 65.0 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88603628|ref|YP_503806.1| - 2.5e-09 37.6 0.1 1.1e-08 35.6 0.0 2.1 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|88603628|ref|YP_503806.1| - 2.7e-09 37.2 0.0 7e-06 26.2 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|88603628|ref|YP_503806.1| - 9e-08 32.0 0.0 0.0006 19.8 0.0 2.9 2 0 0 2 2 2 2 PAS domain Rubredoxin PF00301.20 gi|88603629|ref|YP_503807.1| - 1.2e-19 70.0 7.8 1.5e-19 69.8 7.8 1.1 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.15 gi|88603629|ref|YP_503807.1| - 0.0025 17.8 0.7 0.13 12.4 0.0 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger PHD_4 PF16866.5 gi|88603629|ref|YP_503807.1| - 0.01 15.9 3.9 0.03 14.4 3.9 1.7 1 1 0 1 1 1 0 PHD-finger PHD PF00628.29 gi|88603629|ref|YP_503807.1| - 0.026 14.4 2.2 3.3 7.7 0.1 2.1 2 0 0 2 2 2 0 PHD-finger zf-MIZ PF02891.20 gi|88603629|ref|YP_503807.1| - 0.032 14.0 5.5 0.062 13.1 0.4 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Vps36-NZF-N PF16988.5 gi|88603629|ref|YP_503807.1| - 0.088 12.2 0.1 0.088 12.2 0.1 1.9 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Ima1_N PF09779.9 gi|88603629|ref|YP_503807.1| - 0.17 12.7 1.5 0.78 10.6 0.1 1.9 1 1 1 2 2 2 0 Ima1 N-terminal domain Sigma_reg_N PF13800.6 gi|88603630|ref|YP_503808.1| - 0.0074 16.6 0.1 0.0098 16.2 0.1 1.2 1 0 0 1 1 1 1 Sigma factor regulator N-terminal Phage_holin_6_1 PF09682.10 gi|88603630|ref|YP_503808.1| - 0.018 15.4 0.1 0.023 15.1 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) MAP17 PF15807.5 gi|88603630|ref|YP_503808.1| - 0.064 13.5 0.0 0.07 13.4 0.0 1.2 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 OAD_gamma PF04277.13 gi|88603630|ref|YP_503808.1| - 0.066 13.8 2.8 0.073 13.7 2.8 1.3 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Baculo_11_kDa PF06143.11 gi|88603630|ref|YP_503808.1| - 0.12 12.0 0.4 0.18 11.4 0.4 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family Syndecan PF01034.20 gi|88603630|ref|YP_503808.1| - 0.67 9.9 1.9 1.1 9.3 1.9 1.3 1 0 0 1 1 1 0 Syndecan domain Ion_trans PF00520.31 gi|88603631|ref|YP_503809.1| - 2.3e-23 82.7 16.5 2.9e-23 82.4 16.5 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|88603631|ref|YP_503809.1| - 1.7e-13 50.3 8.7 1.7e-13 50.3 8.7 2.2 3 0 0 3 3 3 1 Ion channel SHOCT PF09851.9 gi|88603631|ref|YP_503809.1| - 0.006 16.3 1.1 0.011 15.5 1.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain Ldr_toxin PF13940.6 gi|88603631|ref|YP_503809.1| - 0.055 13.5 1.0 0.18 11.9 1.0 1.9 1 0 0 1 1 1 0 Toxin Ldr, type I toxin-antitoxin system DUF2206 PF09971.9 gi|88603631|ref|YP_503809.1| - 0.42 9.3 11.4 0.61 8.8 11.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) TMEM237 PF15383.6 gi|88603631|ref|YP_503809.1| - 0.58 9.2 6.5 0.25 10.4 2.9 2.0 2 0 0 2 2 2 0 Transmembrane protein 237 DUF418 PF04235.12 gi|88603631|ref|YP_503809.1| - 1 9.3 7.8 0.11 12.4 0.3 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF418) TPR_2 PF07719.17 gi|88603633|ref|YP_503811.1| - 4.2e-13 48.3 10.2 0.00042 20.2 0.7 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603633|ref|YP_503811.1| - 8e-13 48.8 7.4 5.2e-10 39.8 3.6 2.2 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603633|ref|YP_503811.1| - 1.5e-12 46.8 7.8 0.00021 20.9 0.1 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603633|ref|YP_503811.1| - 2.1e-09 37.8 0.8 8.6e-05 23.0 0.2 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603633|ref|YP_503811.1| - 7.5e-09 35.1 10.3 0.011 15.9 0.5 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603633|ref|YP_503811.1| - 1.7e-07 30.8 12.0 1.2e-05 24.9 1.5 3.7 2 2 1 3 3 3 3 TPR repeat TPR_14 PF13428.6 gi|88603633|ref|YP_503811.1| - 1e-06 29.1 2.9 0.0056 17.4 0.1 3.3 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603633|ref|YP_503811.1| - 2.8e-05 24.5 8.6 0.99 10.2 0.2 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603633|ref|YP_503811.1| - 0.00011 22.3 0.3 0.0075 16.6 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603633|ref|YP_503811.1| - 0.00012 22.1 0.4 0.35 11.0 0.1 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603633|ref|YP_503811.1| - 0.00013 22.2 7.0 0.00023 21.4 1.9 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603633|ref|YP_503811.1| - 0.0006 20.0 7.6 0.0071 16.6 0.9 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_MalT PF17874.1 gi|88603633|ref|YP_503811.1| - 0.023 14.1 0.1 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 MalT-like TPR region TPR_10 PF13374.6 gi|88603633|ref|YP_503811.1| - 0.14 12.1 3.7 0.28 11.1 0.0 2.9 4 0 0 4 4 4 0 Tetratricopeptide repeat AMA-1 PF02430.15 gi|88603633|ref|YP_503811.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 Apical membrane antigen 1 MIT PF04212.18 gi|88603633|ref|YP_503811.1| - 0.34 11.0 10.9 1.8 8.7 0.1 2.9 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain TPR_2 PF07719.17 gi|88603634|ref|YP_503812.1| - 5.5e-20 69.8 11.2 2.6e-06 27.1 0.0 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603634|ref|YP_503812.1| - 5.7e-18 63.9 11.3 6e-06 25.9 0.3 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603634|ref|YP_503812.1| - 5.2e-15 54.3 12.6 0.00025 21.0 0.2 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603634|ref|YP_503812.1| - 2.5e-14 53.6 5.6 1.1e-10 41.9 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603634|ref|YP_503812.1| - 1.7e-13 50.7 4.0 2e-05 24.8 1.2 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603634|ref|YP_503812.1| - 3.4e-11 43.0 11.2 0.034 14.8 0.2 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603634|ref|YP_503812.1| - 4e-11 43.3 5.6 0.01 16.3 0.0 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603634|ref|YP_503812.1| - 4.1e-10 39.6 6.8 0.00069 20.2 0.0 4.2 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603634|ref|YP_503812.1| - 2e-08 33.8 11.2 9.9e-08 31.6 0.3 4.2 3 2 1 4 4 4 1 TPR repeat MIT PF04212.18 gi|88603634|ref|YP_503812.1| - 9.5e-07 28.8 1.6 0.043 13.9 0.0 3.4 3 0 0 3 3 3 2 MIT (microtubule interacting and transport) domain TPR_17 PF13431.6 gi|88603634|ref|YP_503812.1| - 3.3e-06 27.1 5.6 0.0034 17.7 0.0 4.2 4 1 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603634|ref|YP_503812.1| - 5.5e-06 26.5 3.8 0.0046 17.1 0.8 2.9 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88603634|ref|YP_503812.1| - 6.2e-06 26.3 2.1 0.06 13.5 0.0 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603634|ref|YP_503812.1| - 0.0012 18.8 6.9 0.13 12.3 0.0 4.5 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88603634|ref|YP_503812.1| - 0.0023 18.4 1.6 0.18 12.5 1.1 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|88603634|ref|YP_503812.1| - 0.057 12.9 0.0 0.26 10.8 0.0 2.1 2 0 0 2 2 2 0 SHNi-TPR TPR_10 PF13374.6 gi|88603634|ref|YP_503812.1| - 0.064 13.1 9.7 1.2 9.2 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat YcaO_C PF18381.1 gi|88603634|ref|YP_503812.1| - 0.13 12.1 0.8 0.96 9.3 0.4 2.3 2 1 0 2 2 2 0 YcaO cyclodehydratase C-terminal domain AMP-binding PF00501.28 gi|88603635|ref|YP_503813.1| - 3.7e-83 279.5 0.0 4.5e-83 279.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88603635|ref|YP_503813.1| - 7.2e-23 81.4 0.7 1.4e-22 80.5 0.7 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SRI PF08236.11 gi|88603635|ref|YP_503813.1| - 0.034 14.3 0.9 0.092 12.9 0.9 1.7 1 0 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain Fer4 PF00037.27 gi|88603636|ref|YP_503814.1| - 1.3e-11 43.8 22.4 3.5e-07 29.8 5.1 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|88603636|ref|YP_503814.1| - 4.2e-09 36.1 15.5 1.7e-05 24.7 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603636|ref|YP_503814.1| - 8.6e-09 36.2 9.1 0.00043 21.2 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|88603636|ref|YP_503814.1| - 1.8e-08 34.0 11.8 5.2e-05 23.1 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|88603636|ref|YP_503814.1| - 2.5e-08 34.4 10.7 0.00059 20.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603636|ref|YP_503814.1| - 4.6e-06 27.1 9.5 0.003 18.0 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603636|ref|YP_503814.1| - 1.2e-05 25.4 11.8 0.0022 18.4 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88603636|ref|YP_503814.1| - 1.4e-05 25.1 23.8 0.00022 21.3 13.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603636|ref|YP_503814.1| - 1.5e-05 25.0 13.6 3.8e-05 23.8 12.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88603636|ref|YP_503814.1| - 3.8e-05 24.0 7.2 0.019 15.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88603636|ref|YP_503814.1| - 8.2e-05 23.3 11.6 0.0031 18.2 1.8 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|88603636|ref|YP_503814.1| - 0.00013 22.0 13.3 0.0046 17.0 13.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603636|ref|YP_503814.1| - 0.00057 20.4 11.3 0.0052 17.3 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|88603636|ref|YP_503814.1| - 0.097 13.5 12.9 0.46 11.4 2.0 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 gi|88603637|ref|YP_503815.1| - 1.2e-33 116.7 0.1 1.4e-33 116.5 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|88603638|ref|YP_503816.1| - 3.3e-65 220.0 1.7 4.3e-65 219.7 1.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|88603638|ref|YP_503816.1| - 5.3e-26 90.9 0.0 1.1e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|88603638|ref|YP_503816.1| - 3.2e-06 27.0 0.0 9.7e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain RuBisCO_small PF00101.20 gi|88603638|ref|YP_503816.1| - 0.06 13.3 0.2 0.3 11.1 0.0 2.1 3 0 0 3 3 3 0 Ribulose bisphosphate carboxylase, small chain DXP_redisom_C PF08436.12 gi|88603638|ref|YP_503816.1| - 0.08 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TPP_enzyme_C PF02775.21 gi|88603639|ref|YP_503817.1| - 1.1e-23 83.7 0.5 1.6e-23 83.2 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|88603639|ref|YP_503817.1| - 0.0075 15.5 1.0 0.015 14.5 0.7 1.6 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Potex_coat PF06184.11 gi|88603639|ref|YP_503817.1| - 0.061 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Potexvirus coat protein CxxCxxCC PF03692.15 gi|88603640|ref|YP_503818.1| - 2.4e-06 28.2 9.9 6.4e-06 26.8 9.9 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HRDC PF00570.23 gi|88603641|ref|YP_503819.1| - 2.9e-23 81.6 0.1 1e-22 79.9 0.0 2.0 2 0 0 2 2 2 1 HRDC domain RQC PF09382.10 gi|88603641|ref|YP_503819.1| - 3.6e-21 75.1 0.0 8.6e-21 73.9 0.0 1.6 1 0 0 1 1 1 1 RQC domain Helicase_C PF00271.31 gi|88603641|ref|YP_503819.1| - 1e-20 74.2 0.0 4.6e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|88603641|ref|YP_503819.1| - 3.9e-20 72.3 0.0 9.7e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase RecQ_Zn_bind PF16124.5 gi|88603641|ref|YP_503819.1| - 9.4e-19 67.9 0.9 2e-18 66.9 0.9 1.6 1 0 0 1 1 1 1 RecQ zinc-binding ResIII PF04851.15 gi|88603641|ref|YP_503819.1| - 0.05 13.6 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit HTH_35 PF13693.6 gi|88603641|ref|YP_503819.1| - 0.12 12.4 0.1 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NADH_4Fe-4S PF10589.9 gi|88603641|ref|YP_503819.1| - 0.12 12.4 0.3 2 8.6 0.0 2.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CheW PF01584.19 gi|88603642|ref|YP_503820.1| - 8.6e-27 93.5 0.4 1.1e-26 93.1 0.4 1.1 1 0 0 1 1 1 1 CheW-like domain PseudoU_synth_1 PF01416.20 gi|88603643|ref|YP_503821.1| - 1.9e-29 102.3 0.0 3.5e-22 78.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase PHP_C PF13263.6 gi|88603644|ref|YP_503822.1| - 2e-15 56.2 0.3 3.9e-15 55.3 0.3 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|88603644|ref|YP_503822.1| - 5.5e-10 39.8 0.1 8.3e-10 39.2 0.1 1.5 1 1 0 1 1 1 1 PHP domain DUF4346 PF14251.6 gi|88603645|ref|YP_503823.1| - 0.00021 21.3 0.0 0.00081 19.4 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|88603645|ref|YP_503823.1| - 0.036 13.7 0.0 0.091 12.4 0.0 1.6 1 1 0 1 1 1 0 Pterin binding enzyme CdhD PF03599.16 gi|88603645|ref|YP_503823.1| - 0.22 10.2 0.0 0.34 9.6 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Prok-JAB PF14464.6 gi|88603646|ref|YP_503824.1| - 3.2e-10 39.8 0.0 5.3e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|88603646|ref|YP_503824.1| - 0.022 14.7 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain CTP_transf_like PF01467.26 gi|88603647|ref|YP_503825.1| - 2.2e-16 60.4 0.1 2.6e-16 60.1 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF2067 PF09840.9 gi|88603647|ref|YP_503825.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Ribo_biogen_C PF04034.13 gi|88603648|ref|YP_503826.1| - 3.1e-42 143.3 0.0 3.7e-42 143.1 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|88603648|ref|YP_503826.1| - 3.9e-06 26.6 0.1 6.4e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI RNA_Me_trans PF04252.13 gi|88603648|ref|YP_503826.1| - 0.018 14.6 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase TPR_1 PF00515.28 gi|88603649|ref|YP_503827.1| - 1.7e-68 223.8 18.1 4.7e-09 35.7 0.0 12.2 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603649|ref|YP_503827.1| - 2.6e-66 214.5 12.1 1e-07 31.5 0.0 11.8 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603649|ref|YP_503827.1| - 3e-64 207.9 10.1 5.5e-06 26.2 0.0 11.5 12 0 0 12 12 11 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603649|ref|YP_503827.1| - 5.2e-50 164.3 1.9 3e-05 24.1 0.0 12.0 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603649|ref|YP_503827.1| - 5.4e-46 154.0 5.0 2.2e-08 33.6 0.0 10.6 4 4 7 11 11 11 9 TPR repeat TPR_19 PF14559.6 gi|88603649|ref|YP_503827.1| - 4.2e-42 142.5 0.1 3.3e-08 33.9 0.0 7.4 5 2 2 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603649|ref|YP_503827.1| - 7e-40 135.4 0.0 1.5e-08 35.2 0.0 8.1 7 1 1 8 8 8 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603649|ref|YP_503827.1| - 5.1e-39 129.6 5.1 0.00032 21.3 0.2 11.1 2 2 9 11 11 11 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603649|ref|YP_503827.1| - 1.8e-37 124.6 4.8 0.0046 16.9 0.0 11.0 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603649|ref|YP_503827.1| - 5.7e-37 125.9 4.8 2e-07 31.2 0.0 8.4 6 3 1 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603649|ref|YP_503827.1| - 1.4e-28 98.8 0.2 5.1e-05 23.3 0.0 6.9 4 2 3 7 7 7 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603649|ref|YP_503827.1| - 1.9e-28 97.1 14.5 0.00051 20.5 0.0 11.3 12 0 0 12 12 11 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603649|ref|YP_503827.1| - 1.6e-25 89.1 6.8 1.3e-09 38.2 0.3 6.2 5 1 2 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|88603649|ref|YP_503827.1| - 1.3e-15 56.7 17.6 0.015 15.2 0.0 10.5 11 0 0 11 11 10 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603649|ref|YP_503827.1| - 1.1e-11 44.4 0.5 0.0048 16.1 0.1 5.7 1 1 5 6 6 6 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603649|ref|YP_503827.1| - 3.8e-11 42.9 1.2 0.25 11.4 0.0 6.5 6 1 1 7 7 6 3 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|88603649|ref|YP_503827.1| - 4.1e-10 39.9 7.3 2.9 8.0 0.1 8.4 3 2 3 7 7 7 1 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|88603649|ref|YP_503827.1| - 7.8e-09 36.1 1.4 1.7 9.1 0.0 6.3 3 3 3 6 6 6 2 Bacterial transcriptional activator domain TPR_20 PF14561.6 gi|88603649|ref|YP_503827.1| - 1e-08 35.4 0.0 0.039 14.3 0.0 4.5 3 2 2 5 5 4 2 Tetratricopeptide repeat SNAP PF14938.6 gi|88603649|ref|YP_503827.1| - 5e-08 32.7 6.8 0.017 14.5 0.1 4.8 3 2 2 5 5 5 2 Soluble NSF attachment protein, SNAP NARP1 PF12569.8 gi|88603649|ref|YP_503827.1| - 5.2e-08 32.3 2.9 0.017 14.0 0.1 4.6 1 1 4 5 5 5 2 NMDA receptor-regulated protein 1 PknG_TPR PF16918.5 gi|88603649|ref|YP_503827.1| - 1.1e-06 27.7 0.1 1.6e-05 23.8 0.0 2.6 2 1 2 4 4 4 1 Protein kinase G tetratricopeptide repeat TPR_4 PF07721.14 gi|88603649|ref|YP_503827.1| - 9.3e-06 25.8 0.0 3.3 8.6 0.0 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|88603649|ref|YP_503827.1| - 9.5e-06 25.5 0.6 0.26 11.0 0.1 5.5 2 2 2 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 RPN7 PF10602.9 gi|88603649|ref|YP_503827.1| - 1.3e-05 25.0 5.2 2.3 7.9 0.0 6.1 1 1 3 4 4 4 1 26S proteasome subunit RPN7 SPO22 PF08631.10 gi|88603649|ref|YP_503827.1| - 1.4e-05 24.8 1.1 0.14 11.6 0.0 4.7 4 1 0 5 5 5 1 Meiosis protein SPO22/ZIP4 like ChAPs PF09295.10 gi|88603649|ref|YP_503827.1| - 1.9e-05 23.9 0.0 0.0013 17.8 0.0 2.6 2 1 1 3 3 2 1 ChAPs (Chs5p-Arf1p-binding proteins) MIT PF04212.18 gi|88603649|ref|YP_503827.1| - 2.1e-05 24.5 15.6 3.9 7.6 1.2 7.8 8 2 1 10 10 7 1 MIT (microtubule interacting and transport) domain TPR_MalT PF17874.1 gi|88603649|ref|YP_503827.1| - 4e-05 23.2 0.0 2.4 7.4 0.0 4.5 2 1 1 4 4 4 1 MalT-like TPR region Alkyl_sulf_dimr PF14863.6 gi|88603649|ref|YP_503827.1| - 0.00011 22.7 0.1 5.7 7.4 0.1 4.8 3 1 1 4 4 4 0 Alkyl sulfatase dimerisation TPR_21 PF09976.9 gi|88603649|ref|YP_503827.1| - 0.00018 21.3 3.7 0.13 11.9 0.0 4.3 4 1 0 4 4 4 1 Tetratricopeptide repeat-like domain FAT PF02259.23 gi|88603649|ref|YP_503827.1| - 0.00027 20.3 0.8 2 7.6 0.0 3.7 2 1 2 4 4 3 1 FAT domain DUF5113 PF17140.4 gi|88603649|ref|YP_503827.1| - 0.0012 18.6 1.8 2.1 8.1 0.1 5.1 5 1 1 6 6 6 1 Domain of unknown function (DUF5113) Coatomer_E PF04733.14 gi|88603649|ref|YP_503827.1| - 0.0018 17.8 0.0 2.8 7.3 0.0 3.0 3 0 0 3 3 3 2 Coatomer epsilon subunit DUF627 PF04781.12 gi|88603649|ref|YP_503827.1| - 0.0068 16.4 0.1 60 3.7 0.0 5.0 5 3 2 7 7 6 0 Protein of unknown function (DUF627) Wzy_C_2 PF11846.8 gi|88603649|ref|YP_503827.1| - 0.0092 15.9 0.3 3.3 7.6 0.0 3.6 2 1 1 3 3 3 1 Virulence factor membrane-bound polymerase, C-terminal SHNi-TPR PF10516.9 gi|88603649|ref|YP_503827.1| - 0.01 15.3 2.6 23 4.6 0.2 4.4 4 0 0 4 4 4 0 SHNi-TPR DUF4919 PF16266.5 gi|88603649|ref|YP_503827.1| - 0.015 15.2 0.5 1.3 8.9 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4919) Rapsyn_N PF10579.9 gi|88603649|ref|YP_503827.1| - 0.06 13.5 0.0 2.2 8.4 0.0 3.1 2 0 0 2 2 2 0 Rapsyn N-terminal myristoylation and linker region PPR PF01535.20 gi|88603649|ref|YP_503827.1| - 0.51 10.7 20.9 3 8.3 0.0 8.1 10 0 0 10 10 8 0 PPR repeat HTH_Bact PF18768.1 gi|88603649|ref|YP_503827.1| - 1.1 8.9 3.9 5.3 6.7 0.2 3.6 3 0 0 3 3 3 0 Helix-turn-helix bacterial domain TPR_3 PF07720.12 gi|88603649|ref|YP_503827.1| - 1.4 9.0 11.8 56 3.9 0.1 5.7 6 0 0 6 6 5 0 Tetratricopeptide repeat Exonuc_VII_S PF02609.16 gi|88603649|ref|YP_503827.1| - 2.5 8.2 7.1 14 5.9 0.2 4.8 6 0 0 6 6 4 0 Exonuclease VII small subunit DJ-1_PfpI PF01965.24 gi|88603650|ref|YP_503828.1| - 2.1e-24 86.2 0.0 2.4e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family FadR_C PF07840.12 gi|88603651|ref|YP_503829.1| - 0.0091 15.9 0.7 0.02 14.8 0.7 1.5 1 0 0 1 1 1 1 FadR C-terminal domain Pentapeptide PF00805.22 gi|88603652|ref|YP_503830.1| - 1.6e-26 91.6 19.4 7.4e-12 44.7 4.0 3.1 1 1 2 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|88603652|ref|YP_503830.1| - 1.5e-16 60.3 0.9 1.6e-08 34.6 0.1 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|88603652|ref|YP_503830.1| - 2.9e-14 53.0 2.1 9.1e-07 28.9 0.1 2.5 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DNA_ligase_OB PF03120.16 gi|88603652|ref|YP_503830.1| - 0.031 14.2 0.1 2 8.4 0.0 2.7 1 1 2 3 3 3 0 NAD-dependent DNA ligase OB-fold domain Radical_SAM PF04055.21 gi|88603653|ref|YP_503831.1| - 4.4e-10 40.2 0.1 7e-10 39.5 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88603653|ref|YP_503831.1| - 0.064 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Peptidase_S24 PF00717.23 gi|88603654|ref|YP_503832.1| - 0.00064 19.6 0.1 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like DUF454 PF04304.13 gi|88603654|ref|YP_503832.1| - 0.033 14.2 0.9 0.62 10.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF454) DUF3309 PF11752.8 gi|88603654|ref|YP_503832.1| - 2.8 8.0 11.7 0.61 10.2 5.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) DNA_pol_E_B PF04042.16 gi|88603655|ref|YP_503833.1| - 8.8e-13 48.1 0.0 1.6e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|88603655|ref|YP_503833.1| - 5.4e-12 46.6 0.1 1e-11 45.7 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|88603655|ref|YP_503833.1| - 1.1e-08 35.5 0.0 2.4e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|88603655|ref|YP_503833.1| - 1.3e-06 28.3 0.0 2.8e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|88603655|ref|YP_503833.1| - 0.013 15.5 0.0 0.054 13.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4539) tRNA_anti-like PF12869.7 gi|88603655|ref|YP_503833.1| - 0.052 13.2 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 tRNA_anti-like TPR_2 PF07719.17 gi|88603656|ref|YP_503834.1| - 2.5e-22 77.1 6.6 5.8e-06 26.0 0.0 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603656|ref|YP_503834.1| - 6.8e-17 61.7 10.4 1.2e-07 32.1 1.0 4.3 2 2 1 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603656|ref|YP_503834.1| - 7.3e-15 54.1 2.1 0.00013 21.6 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603656|ref|YP_503834.1| - 8.7e-14 51.6 7.2 7.5e-09 35.8 0.3 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603656|ref|YP_503834.1| - 1.1e-13 50.7 15.5 0.00078 20.1 0.6 6.1 3 2 3 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603656|ref|YP_503834.1| - 1.5e-11 43.5 4.1 0.00061 19.8 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603656|ref|YP_503834.1| - 2.1e-10 41.0 14.4 2.9e-08 34.2 1.4 3.9 2 2 1 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603656|ref|YP_503834.1| - 1.9e-08 34.4 0.8 0.00015 21.9 0.2 2.6 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|88603656|ref|YP_503834.1| - 6.4e-07 29.0 2.2 0.0052 16.4 0.1 3.9 4 1 1 5 5 4 2 TPR repeat TPR_10 PF13374.6 gi|88603656|ref|YP_503834.1| - 2.7e-06 27.1 16.0 0.032 14.1 0.1 6.0 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603656|ref|YP_503834.1| - 7e-06 25.5 0.7 0.0027 17.0 0.1 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88603656|ref|YP_503834.1| - 1.6e-05 25.1 8.0 4.6 8.2 0.0 5.8 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603656|ref|YP_503834.1| - 3.2e-05 24.0 7.2 0.094 13.1 0.0 5.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603656|ref|YP_503834.1| - 0.0066 16.4 6.8 2.9 8.1 0.0 4.7 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603656|ref|YP_503834.1| - 0.024 15.3 10.1 0.079 13.6 0.0 4.5 6 0 0 6 6 4 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603656|ref|YP_503834.1| - 0.031 14.4 10.7 0.14 12.4 4.2 3.9 3 1 0 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.17 gi|88603656|ref|YP_503834.1| - 0.036 14.5 2.3 0.043 14.2 0.7 1.8 1 1 1 2 2 2 0 Bacterial transcriptional activator domain ParD_antitoxin PF03693.14 gi|88603656|ref|YP_503834.1| - 0.04 14.3 0.1 5.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Fis1_TPR_C PF14853.6 gi|88603656|ref|YP_503834.1| - 0.04 14.0 0.1 22 5.2 0.0 3.8 5 0 0 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 gi|88603656|ref|YP_503834.1| - 0.052 13.9 2.4 3.1 8.2 0.4 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|88603656|ref|YP_503834.1| - 0.082 11.8 0.0 6.7 5.5 0.0 2.2 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 DUF4810 PF16068.5 gi|88603656|ref|YP_503834.1| - 0.09 13.3 0.0 0.59 10.7 0.0 2.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4810) TPR_21 PF09976.9 gi|88603656|ref|YP_503834.1| - 0.15 11.7 4.1 5.9 6.5 2.5 3.4 1 1 4 5 5 5 0 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|88603656|ref|YP_503834.1| - 0.24 10.7 3.4 1.3 8.3 0.1 3.0 2 2 1 3 3 3 0 MalT-like TPR region HemY_N PF07219.13 gi|88603656|ref|YP_503834.1| - 1.3 9.3 6.1 0.38 11.0 0.2 3.0 4 1 1 5 5 3 0 HemY protein N-terminus H_PPase PF03030.16 gi|88603657|ref|YP_503835.1| - 1.8e-268 892.5 58.8 2.1e-268 892.3 58.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Tim17 PF02466.19 gi|88603657|ref|YP_503835.1| - 0.25 11.7 0.1 0.25 11.7 0.1 5.3 5 2 0 5 5 5 0 Tim17/Tim22/Tim23/Pmp24 family Trypsin PF00089.26 gi|88603658|ref|YP_503836.1| - 1.8e-22 80.3 0.7 9.7e-22 77.9 0.7 2.0 1 1 0 1 1 1 1 Trypsin PAN_4 PF14295.6 gi|88603658|ref|YP_503836.1| - 1.3e-18 66.6 1.3 1.3e-18 66.6 1.3 2.2 2 0 0 2 2 2 1 PAN domain Trypsin_2 PF13365.6 gi|88603658|ref|YP_503836.1| - 1.8e-10 41.9 0.0 3.8e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PAN_1 PF00024.26 gi|88603658|ref|YP_503836.1| - 0.00079 19.3 0.1 0.0017 18.3 0.1 1.5 1 0 0 1 1 1 1 PAN domain PAN_2 PF08276.11 gi|88603658|ref|YP_503836.1| - 0.0081 16.3 0.2 0.0081 16.3 0.2 2.1 2 0 0 2 2 2 1 PAN-like domain Peptidase_S32 PF05579.13 gi|88603658|ref|YP_503836.1| - 0.024 13.8 2.7 0.13 11.4 0.1 2.3 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S29 PF02907.15 gi|88603658|ref|YP_503836.1| - 0.041 13.6 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 gi|88603658|ref|YP_503836.1| - 0.91 8.1 3.6 6.5 5.3 0.1 2.0 2 0 0 2 2 2 0 Peptidase S46 PKD PF00801.20 gi|88603659|ref|YP_503837.1| - 9.1e-09 35.0 0.0 2.2e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 PKD domain Pilin_N PF07790.11 gi|88603659|ref|YP_503837.1| - 1.1e-05 26.3 3.7 2.1e-05 25.4 3.7 1.7 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Peptidase_S9_N PF02897.15 gi|88603659|ref|YP_503837.1| - 0.1 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain WW_1 PF18507.1 gi|88603659|ref|YP_503837.1| - 0.16 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 WW domain TPR_2 PF07719.17 gi|88603661|ref|YP_503839.1| - 9.2e-08 31.6 0.2 3.5e-05 23.6 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603661|ref|YP_503839.1| - 1.1e-06 28.2 0.1 0.017 14.8 0.0 2.5 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.28 gi|88603661|ref|YP_503839.1| - 1.9e-06 27.4 0.4 2.4e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603661|ref|YP_503839.1| - 6.2e-05 23.4 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603661|ref|YP_503839.1| - 0.00018 21.7 0.7 0.018 15.4 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603661|ref|YP_503839.1| - 0.0011 19.1 0.2 0.0023 18.1 0.2 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 gi|88603661|ref|YP_503839.1| - 0.004 17.3 0.0 0.041 14.1 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603661|ref|YP_503839.1| - 0.009 16.6 0.0 0.018 15.7 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603661|ref|YP_503839.1| - 0.015 15.5 2.8 0.14 12.4 0.4 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Herpes_LMP1 PF05297.11 gi|88603661|ref|YP_503839.1| - 0.065 12.4 0.2 0.09 12.0 0.2 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PDDEXK_2 PF12784.7 gi|88603662|ref|YP_503840.1| - 5.3e-32 111.2 0.0 6.7e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase NTP_transf_2 PF01909.23 gi|88603664|ref|YP_503842.1| - 1.3e-12 47.8 0.0 2e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88603664|ref|YP_503842.1| - 5e-11 42.5 0.0 6.4e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|88603665|ref|YP_503843.1| - 1.9e-20 72.9 0.8 2.3e-20 72.6 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 TPR_2 PF07719.17 gi|88603666|ref|YP_503844.1| - 1.4e-10 40.4 0.2 2e-06 27.5 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603666|ref|YP_503844.1| - 3.5e-08 32.9 0.1 1.8e-06 27.5 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603666|ref|YP_503844.1| - 6.9e-07 28.9 0.1 0.017 14.8 0.0 2.2 1 1 1 2 2 2 2 TPR repeat TPR_17 PF13431.6 gi|88603666|ref|YP_503844.1| - 5e-06 26.5 0.4 0.0036 17.6 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603666|ref|YP_503844.1| - 1.6e-05 25.3 0.0 2e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603666|ref|YP_503844.1| - 3.6e-05 23.6 0.0 0.00094 19.2 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603666|ref|YP_503844.1| - 0.00049 20.3 0.2 0.00077 19.6 0.2 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|88603666|ref|YP_503844.1| - 0.0012 19.5 0.0 0.0019 18.8 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603666|ref|YP_503844.1| - 0.0055 17.0 0.7 0.038 14.3 0.5 2.2 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603666|ref|YP_503844.1| - 0.034 15.0 0.1 0.88 10.6 0.0 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603666|ref|YP_503844.1| - 0.054 13.6 0.2 0.11 12.7 0.2 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603666|ref|YP_503844.1| - 0.072 13.2 0.1 15 5.9 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|88603666|ref|YP_503844.1| - 0.14 12.2 0.1 0.22 11.6 0.1 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF3856) PDDEXK_2 PF12784.7 gi|88603667|ref|YP_503845.1| - 5.1e-41 140.7 0.0 5.9e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase Gla PF00594.20 gi|88603667|ref|YP_503845.1| - 0.1 12.8 2.5 0.65 10.3 0.3 2.5 2 0 0 2 2 2 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain PKD PF00801.20 gi|88603668|ref|YP_503846.1| - 5.6e-86 282.4 61.1 9e-11 41.5 1.0 14.8 14 1 0 14 14 14 12 PKD domain Pilin_N PF07790.11 gi|88603668|ref|YP_503846.1| - 2.6e-05 25.1 0.0 7.3e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal zf-dskA_traR PF01258.17 gi|88603668|ref|YP_503846.1| - 2.3 8.2 4.4 22 5.1 0.3 2.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger PKD PF00801.20 gi|88603669|ref|YP_503847.1| - 7.4e-122 397.4 74.0 1.8e-12 46.9 2.6 16.2 15 0 0 15 15 15 15 PKD domain Pilin_N PF07790.11 gi|88603669|ref|YP_503847.1| - 8.5e-11 42.6 0.1 4.5e-10 40.3 0.1 2.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PKD_3 PF16820.5 gi|88603669|ref|YP_503847.1| - 1.3e-10 40.9 25.8 0.11 12.2 0.2 11.4 12 0 0 12 12 12 4 PKD-like domain SdrD_B PF17210.3 gi|88603669|ref|YP_503847.1| - 3.8e-10 40.0 1.7 1.7e-09 37.9 0.5 2.9 2 0 0 2 2 2 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|88603669|ref|YP_503847.1| - 0.024 14.9 1.4 1.1 9.6 0.1 4.0 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain MG2 PF01835.19 gi|88603669|ref|YP_503847.1| - 0.19 12.2 1.4 35 4.9 0.0 4.4 4 0 0 4 4 4 0 MG2 domain DUF5011 PF16403.5 gi|88603669|ref|YP_503847.1| - 0.37 11.0 15.2 24 5.1 2.1 7.1 7 0 0 7 7 7 0 Domain of unknown function (DUF5011) YidD PF01809.18 gi|88603669|ref|YP_503847.1| - 1.7 8.6 9.2 66 3.5 0.1 4.5 4 0 0 4 4 4 0 Putative membrane protein insertion efficiency factor Pilin_N PF07790.11 gi|88603670|ref|YP_503848.1| - 0.0014 19.5 0.0 0.0036 18.2 0.0 1.8 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal YajC PF02699.15 gi|88603670|ref|YP_503848.1| - 0.03 14.2 0.2 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Preprotein translocase subunit PDDEXK_2 PF12784.7 gi|88603671|ref|YP_503849.1| - 7.1e-59 199.1 0.1 9.7e-59 198.7 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase Yae1_N PF09811.9 gi|88603671|ref|YP_503849.1| - 0.22 11.2 2.0 0.4 10.4 2.0 1.3 1 0 0 1 1 1 0 Essential protein Yae1, N terminal Yae1_N PF09811.9 gi|88603672|ref|YP_503850.1| - 0.17 11.6 2.9 0.3 10.8 2.9 1.3 1 0 0 1 1 1 0 Essential protein Yae1, N terminal Glyco_hydro_99 PF16317.5 gi|88603673|ref|YP_503851.1| - 0.15 11.2 0.0 0.17 11.0 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 99 PLDc PF00614.22 gi|88603673|ref|YP_503851.1| - 0.17 12.1 0.5 4.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Phospholipase D Active site motif PDDEXK_2 PF12784.7 gi|88603674|ref|YP_503852.1| - 2.6e-39 135.1 0.4 6.8e-23 81.4 0.3 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease family transposase Ku_C PF03730.14 gi|88603674|ref|YP_503852.1| - 0.25 12.1 1.5 0.69 10.6 1.5 1.9 1 1 0 1 1 1 0 Ku70/Ku80 C-terminal arm peroxidase PF00141.23 gi|88603675|ref|YP_503853.1| - 1.4e-89 299.7 0.0 1.4e-48 165.6 0.0 2.1 2 0 0 2 2 2 2 Peroxidase PAS_4 PF08448.10 gi|88603676|ref|YP_503854.1| - 2.7e-24 85.5 0.0 3e-22 78.9 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88603676|ref|YP_503854.1| - 6.9e-21 74.5 0.0 7.2e-09 35.8 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88603676|ref|YP_503854.1| - 7e-18 64.7 0.0 1.8e-10 40.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold ABC_sub_bind PF04392.12 gi|88603676|ref|YP_503854.1| - 1.8e-08 34.0 0.0 2.9e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein HATPase_c PF02518.26 gi|88603676|ref|YP_503854.1| - 9.9e-08 32.5 0.1 2.5e-07 31.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88603676|ref|YP_503854.1| - 6.1e-07 29.3 0.0 0.00082 19.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|88603676|ref|YP_503854.1| - 0.0012 19.1 0.0 1.7 9.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold PolC_DP2 PF03833.13 gi|88603677|ref|YP_503855.1| - 0 1268.9 0.0 0 1266.9 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|88603677|ref|YP_503855.1| - 9.2e-11 41.8 0.0 2.1e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain Hint PF01079.20 gi|88603677|ref|YP_503855.1| - 0.11 12.0 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Hint module Rhodanese_C PF12368.8 gi|88603677|ref|YP_503855.1| - 4 7.9 12.6 1.7 9.1 6.1 2.6 2 0 0 2 2 2 0 Rhodanase C-terminal DnaJ PF00226.31 gi|88603678|ref|YP_503856.1| - 9.3e-23 80.1 4.2 1.6e-22 79.4 0.5 2.3 2 0 0 2 2 2 1 DnaJ domain TPR_2 PF07719.17 gi|88603678|ref|YP_503856.1| - 4e-09 35.9 0.0 0.013 15.5 0.0 3.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603678|ref|YP_503856.1| - 4.3e-08 33.7 0.0 0.0002 21.9 0.0 3.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603678|ref|YP_503856.1| - 4.6e-08 32.6 0.0 0.0043 16.8 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603678|ref|YP_503856.1| - 5.4e-07 29.9 0.0 0.11 13.4 0.0 3.9 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603678|ref|YP_503856.1| - 3.1e-06 27.4 0.0 8.8e-05 22.7 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603678|ref|YP_503856.1| - 3.4e-06 27.5 0.1 0.006 17.1 0.0 2.7 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603678|ref|YP_503856.1| - 4.5e-06 26.5 0.1 0.0026 17.8 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603678|ref|YP_503856.1| - 2.8e-05 23.8 0.0 0.11 12.6 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat MIT PF04212.18 gi|88603678|ref|YP_503856.1| - 0.0015 18.6 1.1 1.3 9.2 0.0 3.1 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain TPR_10 PF13374.6 gi|88603678|ref|YP_503856.1| - 0.0037 17.1 0.0 1.7 8.6 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603678|ref|YP_503856.1| - 0.0071 16.0 0.0 3 7.6 0.0 3.2 2 1 1 3 3 3 1 TPR repeat TPR_6 PF13174.6 gi|88603678|ref|YP_503856.1| - 0.03 14.9 0.1 41 5.1 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF627 PF04781.12 gi|88603678|ref|YP_503856.1| - 0.036 14.1 0.0 7.5 6.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF627) SLATT_1 PF18181.1 gi|88603678|ref|YP_503856.1| - 0.053 13.5 0.0 0.053 13.5 0.0 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF2225 PF09986.9 gi|88603678|ref|YP_503856.1| - 0.098 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Hol_Tox PF16935.5 gi|88603678|ref|YP_503856.1| - 0.16 12.0 0.5 0.74 9.9 0.4 2.0 2 0 0 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) DUF521 PF04412.13 gi|88603679|ref|YP_503857.1| - 6.5e-150 499.3 0.0 7.3e-150 499.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|88603680|ref|YP_503858.1| - 9.9e-82 275.0 0.0 1.2e-81 274.7 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Flavoprotein PF02441.19 gi|88603681|ref|YP_503859.1| - 6e-22 78.1 0.0 7.7e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein PKD PF00801.20 gi|88603682|ref|YP_503860.1| - 1.2e-10 41.1 1.3 6.2e-10 38.8 1.3 2.3 1 0 0 1 1 1 1 PKD domain Kelch_1 PF01344.25 gi|88603682|ref|YP_503860.1| - 0.1 12.2 0.0 1.9 8.1 0.0 2.9 2 0 0 2 2 2 0 Kelch motif Peptidase_M23 PF01551.22 gi|88603682|ref|YP_503860.1| - 0.14 12.4 13.0 0.83 9.9 0.1 5.1 5 0 0 5 5 5 0 Peptidase family M23 PKD PF00801.20 gi|88603683|ref|YP_503861.1| - 2e-26 91.6 10.8 5.1e-13 48.7 3.5 2.9 2 0 0 2 2 2 2 PKD domain Secretin_N_2 PF07655.13 gi|88603683|ref|YP_503861.1| - 0.14 12.7 1.0 13 6.4 0.1 2.5 2 0 0 2 2 2 0 Secretin N-terminal domain Invasin_D3 PF09134.10 gi|88603683|ref|YP_503861.1| - 3.9 7.9 6.5 5.9 7.3 1.1 3.4 1 1 0 2 2 2 0 Invasin, domain 3 PKD PF00801.20 gi|88603684|ref|YP_503862.1| - 4.7e-98 321.1 57.3 3.4e-13 49.2 0.4 9.0 8 1 0 8 8 8 8 PKD domain MG2 PF01835.19 gi|88603684|ref|YP_503862.1| - 9.7e-05 22.8 3.0 1.3 9.5 0.0 6.4 5 4 3 8 8 8 1 MG2 domain Herpes_ORF11 PF04797.13 gi|88603684|ref|YP_503862.1| - 0.0013 17.6 3.4 0.17 10.6 0.0 3.3 2 1 1 3 3 3 2 Herpesvirus dUTPase protein DUF3324 PF11797.8 gi|88603684|ref|YP_503862.1| - 0.002 18.1 9.4 6.9 6.6 0.0 6.4 8 0 0 8 8 8 1 Protein of unknown function C-terminal (DUF3324) DUF4512 PF14975.6 gi|88603684|ref|YP_503862.1| - 0.0065 17.2 1.5 17 6.2 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4512) He_PIG PF05345.12 gi|88603684|ref|YP_503862.1| - 0.0083 16.3 48.1 2 8.7 0.7 10.5 10 1 0 10 10 10 3 Putative Ig domain DUF4399 PF14347.6 gi|88603684|ref|YP_503862.1| - 0.042 14.2 0.4 75 3.8 0.0 5.3 7 0 0 7 7 7 0 Domain of unknown function (DUF4399) Y_Y_Y PF07495.13 gi|88603684|ref|YP_503862.1| - 0.091 12.7 16.8 16 5.6 0.1 7.2 8 0 0 8 8 8 0 Y_Y_Y domain PKD_3 PF16820.5 gi|88603684|ref|YP_503862.1| - 0.22 11.3 12.4 57 3.6 0.0 7.2 8 0 0 8 8 8 0 PKD-like domain Invasin_D3 PF09134.10 gi|88603684|ref|YP_503862.1| - 2.7 8.4 32.4 9.6 6.6 0.1 9.0 7 2 1 9 9 9 0 Invasin, domain 3 NEAT PF05031.12 gi|88603684|ref|YP_503862.1| - 2.9 8.5 11.1 38 4.9 0.0 5.6 7 0 0 7 7 7 0 Iron Transport-associated domain HD PF01966.22 gi|88603685|ref|YP_503863.1| - 1.8e-12 47.5 3.0 3.8e-12 46.5 1.4 2.3 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|88603685|ref|YP_503863.1| - 0.00072 19.1 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 HDOD domain UPF0052 PF01933.18 gi|88603686|ref|YP_503864.1| - 7.1e-49 166.6 0.0 8.5e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Say1_Mug180 PF10340.9 gi|88603686|ref|YP_503864.1| - 0.19 10.6 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 Steryl acetyl hydrolase Amidohydro_1 PF01979.20 gi|88603687|ref|YP_503865.1| - 5e-68 229.9 0.5 5.9e-68 229.7 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|88603687|ref|YP_503865.1| - 6.7e-16 58.8 0.2 2.3e-11 43.9 0.0 3.0 2 1 1 3 3 3 3 Amidohydrolase family A_deaminase PF00962.22 gi|88603687|ref|YP_503865.1| - 0.00097 18.6 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase tRNA-synt_2 PF00152.20 gi|88603688|ref|YP_503866.1| - 1.1e-89 300.7 0.0 1.3e-89 300.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|88603688|ref|YP_503866.1| - 3.3e-13 49.4 0.1 5.5e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|88603688|ref|YP_503866.1| - 0.021 14.3 0.5 2.1 7.7 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|88603688|ref|YP_503866.1| - 0.16 12.2 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit 30 Meth_synt_2 PF01717.18 gi|88603689|ref|YP_503867.1| - 4.1e-37 128.2 0.6 1.5e-35 123.0 0.6 2.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|88603689|ref|YP_503867.1| - 4.7e-07 29.6 0.0 7.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|88603689|ref|YP_503867.1| - 8e-07 28.5 0.0 1.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) HTH_24 PF13412.6 gi|88603690|ref|YP_503868.1| - 1.4e-08 34.2 0.1 2.1e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|88603690|ref|YP_503868.1| - 2.9e-07 30.3 0.0 4.8e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|88603690|ref|YP_503868.1| - 6.4e-07 29.1 0.1 1.1e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|88603690|ref|YP_503868.1| - 2.9e-06 27.1 0.1 5.1e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|88603690|ref|YP_503868.1| - 2.9e-05 23.8 0.0 4.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|88603690|ref|YP_503868.1| - 3.1e-05 23.5 0.1 4.1e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TrmB PF01978.19 gi|88603690|ref|YP_503868.1| - 4.3e-05 23.3 0.0 7.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|88603690|ref|YP_503868.1| - 0.00029 20.7 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|88603690|ref|YP_503868.1| - 0.001 18.5 0.3 0.0018 17.8 0.3 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain GntR PF00392.21 gi|88603690|ref|YP_503868.1| - 0.0016 18.1 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|88603690|ref|YP_503868.1| - 0.0022 18.0 0.0 0.0049 16.9 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|88603690|ref|YP_503868.1| - 0.0022 18.4 0.0 0.0038 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|88603690|ref|YP_503868.1| - 0.0057 16.6 0.1 0.0087 16.0 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|88603690|ref|YP_503868.1| - 0.013 15.7 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|88603690|ref|YP_503868.1| - 0.014 15.3 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 HTH domain Phage_rep_O PF04492.13 gi|88603690|ref|YP_503868.1| - 0.018 15.6 0.0 0.031 14.9 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O DprA_WH PF17782.1 gi|88603690|ref|YP_503868.1| - 0.046 13.8 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain KORA PF16509.5 gi|88603690|ref|YP_503868.1| - 0.047 14.0 0.0 0.072 13.4 0.0 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_45 PF14947.6 gi|88603690|ref|YP_503868.1| - 0.052 13.5 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|88603690|ref|YP_503868.1| - 0.085 13.0 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|88603690|ref|YP_503868.1| - 0.088 13.2 0.1 0.13 12.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HNF-1_N PF04814.13 gi|88603690|ref|YP_503868.1| - 0.1 13.2 0.0 0.12 12.9 0.0 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_AsnC-type PF13404.6 gi|88603690|ref|YP_503868.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain Rio2_N PF09202.11 gi|88603690|ref|YP_503868.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_41 PF14502.6 gi|88603690|ref|YP_503868.1| - 0.14 11.8 0.1 0.33 10.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|88603690|ref|YP_503868.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AMP-binding PF00501.28 gi|88603692|ref|YP_503870.1| - 2e-98 329.8 0.0 2.4e-98 329.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88603692|ref|YP_503870.1| - 2.1e-16 60.6 0.0 4.5e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Maf_N PF08383.11 gi|88603692|ref|YP_503870.1| - 0.045 13.5 0.2 0.099 12.4 0.2 1.6 1 0 0 1 1 1 0 Maf N-terminal region AAA PF00004.29 gi|88603693|ref|YP_503871.1| - 5e-96 318.2 0.0 2.3e-48 164.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|88603693|ref|YP_503871.1| - 3.5e-34 116.4 0.4 3.2e-16 58.8 0.0 2.9 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|88603693|ref|YP_503871.1| - 2.5e-27 94.9 0.1 7.9e-27 93.3 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|88603693|ref|YP_503871.1| - 8e-15 54.9 0.0 3e-06 27.1 0.0 2.8 2 2 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|88603693|ref|YP_503871.1| - 2.5e-14 54.0 0.7 4.6e-05 23.9 0.1 3.8 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|88603693|ref|YP_503871.1| - 5.4e-11 42.6 0.7 0.00061 19.8 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|88603693|ref|YP_503871.1| - 5.8e-11 42.8 0.6 0.0066 16.7 0.0 4.3 2 2 1 4 4 4 2 AAA domain AAA_2 PF07724.14 gi|88603693|ref|YP_503871.1| - 8.7e-11 42.2 0.0 4.6e-05 23.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|88603693|ref|YP_503871.1| - 1.2e-10 41.1 0.1 0.0011 18.3 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|88603693|ref|YP_503871.1| - 1e-09 38.7 0.0 0.0018 18.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|88603693|ref|YP_503871.1| - 3.2e-08 33.2 0.2 2.1e-07 30.6 0.0 2.4 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.6 gi|88603693|ref|YP_503871.1| - 9.2e-08 32.2 0.0 0.012 15.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|88603693|ref|YP_503871.1| - 1.8e-07 31.5 0.0 0.0051 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|88603693|ref|YP_503871.1| - 2e-07 30.9 0.0 0.019 14.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|88603693|ref|YP_503871.1| - 3.1e-07 31.0 0.0 0.052 14.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|88603693|ref|YP_503871.1| - 1.5e-06 27.8 0.5 0.048 13.0 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|88603693|ref|YP_503871.1| - 2.8e-06 26.9 0.0 0.11 11.8 0.0 3.4 3 0 0 3 3 3 2 KaiC AAA_7 PF12775.7 gi|88603693|ref|YP_503871.1| - 6.3e-06 25.8 0.0 0.17 11.4 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|88603693|ref|YP_503871.1| - 8.6e-06 25.6 0.0 0.15 11.7 0.0 2.9 3 0 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|88603693|ref|YP_503871.1| - 1.2e-05 25.6 0.0 0.2 12.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|88603693|ref|YP_503871.1| - 1.5e-05 24.9 0.0 0.14 11.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 gi|88603693|ref|YP_503871.1| - 4.5e-05 23.6 0.0 0.3 11.2 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|88603693|ref|YP_503871.1| - 4.7e-05 23.4 0.0 0.21 11.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|88603693|ref|YP_503871.1| - 5.6e-05 22.7 0.3 0.42 10.0 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein Zeta_toxin PF06414.12 gi|88603693|ref|YP_503871.1| - 8.3e-05 22.0 0.2 0.43 9.8 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin Parvo_NS1 PF01057.17 gi|88603693|ref|YP_503871.1| - 0.00013 21.1 0.0 0.34 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|88603693|ref|YP_503871.1| - 0.00015 21.4 6.3 1.4 8.5 0.1 4.2 2 2 0 4 4 4 1 AAA domain AAA_3 PF07726.11 gi|88603693|ref|YP_503871.1| - 0.00018 21.4 0.0 0.53 10.1 0.0 3.1 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|88603693|ref|YP_503871.1| - 0.00036 19.8 0.0 0.9 8.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|88603693|ref|YP_503871.1| - 0.00038 21.0 0.0 1.6 9.3 0.0 2.9 3 0 0 3 3 2 2 ABC transporter AAA_30 PF13604.6 gi|88603693|ref|YP_503871.1| - 0.00062 19.5 1.1 1 9.1 0.1 2.8 2 1 0 2 2 2 2 AAA domain IPT PF01745.16 gi|88603693|ref|YP_503871.1| - 0.00082 18.8 0.1 0.42 10.0 0.0 2.3 2 0 0 2 2 2 1 Isopentenyl transferase ATPase_2 PF01637.18 gi|88603693|ref|YP_503871.1| - 0.001 19.1 0.1 4.4 7.2 0.0 3.6 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|88603693|ref|YP_503871.1| - 0.001 19.0 0.5 1.4 8.8 0.0 3.7 4 0 0 4 4 3 1 NACHT domain AAA_11 PF13086.6 gi|88603693|ref|YP_503871.1| - 0.0012 18.7 0.0 0.73 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|88603693|ref|YP_503871.1| - 0.0012 19.2 0.6 2.7 8.3 0.2 2.9 2 1 1 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|88603693|ref|YP_503871.1| - 0.0023 17.2 0.0 1.4 8.1 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain DUF2075 PF09848.9 gi|88603693|ref|YP_503871.1| - 0.0024 17.2 0.0 1.8 7.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|88603693|ref|YP_503871.1| - 0.0036 17.2 0.0 2.3 8.1 0.0 3.0 2 2 0 2 2 2 1 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|88603693|ref|YP_503871.1| - 0.0044 16.7 0.0 0.9 9.1 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.6 gi|88603693|ref|YP_503871.1| - 0.0058 17.1 0.0 5.6 7.4 0.0 2.9 3 0 0 3 3 2 0 AAA domain Vps4_C PF09336.10 gi|88603693|ref|YP_503871.1| - 0.0062 16.5 0.0 4.7 7.3 0.0 2.7 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain SKI PF01202.22 gi|88603693|ref|YP_503871.1| - 0.0071 16.5 0.0 5.3 7.1 0.0 3.1 3 0 0 3 3 3 0 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|88603693|ref|YP_503871.1| - 0.0099 16.0 0.0 1.4 9.0 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|88603693|ref|YP_503871.1| - 0.014 15.1 0.1 6.9 6.3 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase TniB PF05621.11 gi|88603693|ref|YP_503871.1| - 0.025 14.0 0.0 11 5.3 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein Bac_DnaA PF00308.18 gi|88603693|ref|YP_503871.1| - 0.03 14.1 0.0 5.1 6.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial dnaA protein NTPase_1 PF03266.15 gi|88603693|ref|YP_503871.1| - 0.06 13.3 1.6 18 5.2 0.0 3.7 3 1 1 4 4 4 0 NTPase Guanylate_kin PF00625.21 gi|88603693|ref|YP_503871.1| - 0.088 12.5 0.4 67 3.1 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|88603693|ref|YP_503871.1| - 0.13 11.1 0.0 9.8 4.9 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase SDH_alpha PF03313.15 gi|88603693|ref|YP_503871.1| - 0.16 11.6 0.0 0.88 9.2 0.0 2.0 2 0 0 2 2 2 0 Serine dehydratase alpha chain ResIII PF04851.15 gi|88603693|ref|YP_503871.1| - 0.19 11.7 0.0 21 5.0 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF111 PF01969.17 gi|88603694|ref|YP_503872.1| - 5.8e-113 377.8 0.9 6.6e-113 377.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Rad51 PF08423.11 gi|88603695|ref|YP_503873.1| - 1.2e-23 83.7 0.1 1.5e-23 83.4 0.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|88603695|ref|YP_503873.1| - 3e-12 46.6 0.0 3.9e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|88603695|ref|YP_503873.1| - 4.5e-10 39.3 1.6 1.7e-08 34.1 1.6 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|88603695|ref|YP_503873.1| - 6.1e-07 29.2 0.0 1.3e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|88603695|ref|YP_503873.1| - 7.5e-07 29.1 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|88603695|ref|YP_503873.1| - 0.00022 21.0 0.0 0.00028 20.6 0.0 1.3 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|88603695|ref|YP_503873.1| - 0.00071 19.0 0.2 0.0021 17.5 0.1 1.8 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|88603695|ref|YP_503873.1| - 0.00081 19.7 0.1 0.0021 18.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|88603695|ref|YP_503873.1| - 0.0026 17.5 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88603695|ref|YP_503873.1| - 0.0074 16.0 0.0 0.019 14.7 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|88603695|ref|YP_503873.1| - 0.0079 16.6 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain PhoH PF02562.16 gi|88603695|ref|YP_503873.1| - 0.0084 15.6 0.1 0.023 14.1 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein ATPase_2 PF01637.18 gi|88603695|ref|YP_503873.1| - 0.017 15.0 0.0 0.034 14.0 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|88603695|ref|YP_503873.1| - 0.017 15.6 0.0 0.034 14.6 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|88603695|ref|YP_503873.1| - 0.029 13.7 0.0 0.07 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin CLP1_P PF16575.5 gi|88603695|ref|YP_503873.1| - 0.03 14.1 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_29 PF13555.6 gi|88603695|ref|YP_503873.1| - 0.19 11.5 0.0 0.43 10.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NosD PF05048.13 gi|88603696|ref|YP_503874.1| - 2.1e-44 151.6 0.9 3.2e-44 151.0 0.9 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|88603696|ref|YP_503874.1| - 6.9e-12 45.5 8.6 1.5e-10 41.1 6.3 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|88603696|ref|YP_503874.1| - 0.0012 18.3 4.7 0.023 14.1 2.4 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1565) N_BRCA1_IG PF16158.5 gi|88603696|ref|YP_503874.1| - 0.0023 18.6 0.0 0.0083 16.8 0.0 1.9 2 0 0 2 2 2 1 Ig-like domain from next to BRCA1 gene RRM_1 PF00076.22 gi|88603697|ref|YP_503875.1| - 6.6e-23 80.3 0.1 8.2e-23 80.0 0.1 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_5 PF13893.6 gi|88603697|ref|YP_503875.1| - 5.8e-08 32.4 0.0 6.9e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_occluded PF16842.5 gi|88603697|ref|YP_503875.1| - 0.00093 19.0 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 Occluded RNA-recognition motif RRM_3 PF08777.11 gi|88603697|ref|YP_503875.1| - 0.0023 18.0 0.0 0.0028 17.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding motif Calcipressin PF04847.12 gi|88603697|ref|YP_503875.1| - 0.015 15.0 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Calcipressin CBFD_NFYB_HMF PF00808.23 gi|88603699|ref|YP_503877.1| - 4.3e-13 49.3 0.4 4.7e-13 49.2 0.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|88603699|ref|YP_503877.1| - 1.8e-11 44.5 0.2 2e-11 44.3 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|88603699|ref|YP_503877.1| - 3.3e-08 33.6 0.1 3.6e-08 33.5 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|88603699|ref|YP_503877.1| - 2.7e-06 27.5 0.5 2.9e-06 27.4 0.5 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|88603699|ref|YP_503877.1| - 0.00018 21.6 0.1 0.00021 21.4 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|88603699|ref|YP_503877.1| - 0.00083 19.3 0.0 0.00083 19.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.6 gi|88603699|ref|YP_503877.1| - 0.0017 18.7 0.1 0.0021 18.4 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-18kDa PF02269.16 gi|88603699|ref|YP_503877.1| - 0.013 15.5 0.1 0.019 15.0 0.0 1.3 1 1 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|88603699|ref|YP_503877.1| - 0.035 14.6 0.0 0.04 14.4 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A XOO_2897-deam PF14440.6 gi|88603699|ref|YP_503877.1| - 0.05 13.7 0.1 0.057 13.5 0.1 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase ThiC_Rad_SAM PF01964.18 gi|88603700|ref|YP_503878.1| - 1.3e-156 521.7 0.0 1.5e-156 521.4 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Lactamase_B PF00753.27 gi|88603701|ref|YP_503879.1| - 1.2e-20 74.4 5.7 1.7e-20 73.9 5.7 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88603701|ref|YP_503879.1| - 8.3e-05 22.2 1.0 0.00016 21.2 1.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF123 PF01986.16 gi|88603702|ref|YP_503880.1| - 4.3e-29 100.9 0.0 5.8e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Gp_dh_C PF02800.20 gi|88603703|ref|YP_503881.1| - 1.2e-24 86.7 0.6 1.8e-24 86.1 0.6 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|88603703|ref|YP_503881.1| - 2.4e-11 43.8 0.3 9e-11 42.0 0.3 2.0 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|88603703|ref|YP_503881.1| - 1.2e-06 28.8 1.0 5e-06 26.8 0.1 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|88603703|ref|YP_503881.1| - 5.1e-06 26.7 0.7 1.2e-05 25.5 0.1 2.0 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|88603703|ref|YP_503881.1| - 8.2e-05 22.0 1.4 0.017 14.5 0.1 2.8 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|88603703|ref|YP_503881.1| - 0.00052 20.3 0.1 0.0018 18.6 0.1 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|88603703|ref|YP_503881.1| - 0.0039 17.8 0.1 0.15 12.7 0.0 2.7 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|88603703|ref|YP_503881.1| - 0.0045 17.6 0.2 0.014 16.1 0.2 1.9 1 0 0 1 1 1 1 PglD N-terminal domain GFO_IDH_MocA PF01408.22 gi|88603703|ref|YP_503881.1| - 0.04 14.7 0.1 0.13 13.1 0.1 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|88603703|ref|YP_503881.1| - 0.078 13.6 0.7 0.8 10.3 0.7 2.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|88603703|ref|YP_503881.1| - 0.083 13.3 0.2 0.29 11.6 0.2 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain tRNA-synt_1b PF00579.25 gi|88603704|ref|YP_503882.1| - 2e-56 191.5 0.0 2.4e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|88603704|ref|YP_503882.1| - 0.0021 17.0 0.0 1.3 7.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) TTRAP PF14203.6 gi|88603704|ref|YP_503882.1| - 0.055 13.4 0.0 16 5.6 0.0 3.2 3 0 0 3 3 3 0 Putative tranposon-transfer assisting protein RIO1 PF01163.22 gi|88603705|ref|YP_503883.1| - 8.3e-57 191.8 0.0 1e-56 191.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|88603705|ref|YP_503883.1| - 1.4e-05 25.2 0.2 0.00016 21.7 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|88603705|ref|YP_503883.1| - 0.00063 19.2 0.0 0.0018 17.7 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|88603705|ref|YP_503883.1| - 0.0067 15.8 0.0 2.8 7.2 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|88603705|ref|YP_503883.1| - 0.029 13.2 0.0 0.049 12.4 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase KH_1 PF00013.29 gi|88603706|ref|YP_503884.1| - 4.2e-13 48.9 15.0 1.3e-08 34.5 2.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|88603706|ref|YP_503884.1| - 0.0089 15.8 1.1 0.0089 15.8 1.1 2.9 3 1 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|88603706|ref|YP_503884.1| - 0.24 11.3 6.9 2.3 8.1 0.4 3.0 2 1 1 3 3 3 0 KH domain DEAD PF00270.29 gi|88603707|ref|YP_503885.1| - 3.6e-24 85.5 0.0 6.7e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|88603707|ref|YP_503885.1| - 1.2e-14 54.6 2.0 1.4e-07 32.0 0.3 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|88603707|ref|YP_503885.1| - 3.6e-09 36.9 0.0 2.4e-08 34.3 0.0 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88603707|ref|YP_503885.1| - 9.8e-09 35.4 0.0 1.7e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cdd1 PF11731.8 gi|88603707|ref|YP_503885.1| - 5.5e-06 26.5 0.2 0.00039 20.6 0.0 2.9 3 0 0 3 3 3 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|88603707|ref|YP_503885.1| - 6.9e-06 25.8 0.0 0.0032 17.3 0.0 2.8 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|88603707|ref|YP_503885.1| - 2.9e-05 24.1 0.0 0.00053 20.2 0.1 2.6 2 0 0 2 2 2 1 IMS family HHH motif HHH PF00633.23 gi|88603707|ref|YP_503885.1| - 0.0003 20.5 0.4 0.002 17.9 0.0 2.6 3 0 0 3 3 2 1 Helix-hairpin-helix motif Sec63 PF02889.16 gi|88603707|ref|YP_503885.1| - 0.0059 15.8 0.0 0.0086 15.3 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain HHH_2 PF12826.7 gi|88603707|ref|YP_503885.1| - 0.007 16.4 0.0 6.6 6.9 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif TfoX_C PF04994.13 gi|88603707|ref|YP_503885.1| - 0.013 15.6 0.0 0.77 9.9 0.0 2.4 2 0 0 2 2 2 0 TfoX C-terminal domain DUF4332 PF14229.6 gi|88603707|ref|YP_503885.1| - 0.027 14.7 0.0 0.069 13.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_8 PF14716.6 gi|88603707|ref|YP_503885.1| - 0.054 13.9 0.4 0.2 12.0 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain DNA_pol_B_3 PF08408.10 gi|88603707|ref|YP_503885.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase family B viral insert ATPase PF06745.13 gi|88603707|ref|YP_503885.1| - 0.16 11.3 0.0 0.73 9.1 0.0 2.1 2 0 0 2 2 2 0 KaiC RNA_pol_Rpb2_6 PF00562.28 gi|88603707|ref|YP_503885.1| - 0.2 10.7 0.1 0.38 9.8 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 6 CGI-121 PF08617.10 gi|88603708|ref|YP_503886.1| - 0.00044 20.4 0.0 0.00055 20.1 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 zf-like PF04071.12 gi|88603708|ref|YP_503886.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Cysteine-rich small domain HAMP PF00672.25 gi|88603710|ref|YP_503888.1| - 1.4e-11 44.6 0.0 4.8e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 HAMP domain sCache_3_2 PF17203.4 gi|88603710|ref|YP_503888.1| - 0.068 13.3 1.0 0.17 12.0 1.0 1.8 1 1 0 1 1 1 0 Single cache domain 3 4HB_MCP_1 PF12729.7 gi|88603710|ref|YP_503888.1| - 0.68 9.4 7.1 0.78 9.3 0.4 2.2 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction TarH PF02203.15 gi|88603710|ref|YP_503888.1| - 1.4 8.8 3.6 0.68 9.8 0.5 1.9 2 0 0 2 2 2 0 Tar ligand binding domain homologue MoCF_biosynth PF00994.24 gi|88603711|ref|YP_503889.1| - 2.7e-35 121.1 0.1 3.2e-35 120.9 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Cdc6_C PF09079.11 gi|88603712|ref|YP_503890.1| - 9.3e-18 64.0 0.0 2.3e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|88603712|ref|YP_503890.1| - 1.7e-09 38.1 0.0 3.2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88603712|ref|YP_503890.1| - 4.1e-09 37.0 0.0 2.6e-08 34.4 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|88603712|ref|YP_503890.1| - 7.4e-08 32.9 0.2 3.3e-07 30.8 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|88603712|ref|YP_503890.1| - 5.5e-05 23.2 0.1 0.0001 22.3 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|88603712|ref|YP_503890.1| - 0.00014 21.8 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|88603712|ref|YP_503890.1| - 0.0013 18.2 0.1 0.0087 15.5 0.1 2.0 1 1 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|88603712|ref|YP_503890.1| - 0.0023 17.1 0.0 0.0068 15.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DEAD PF00270.29 gi|88603712|ref|YP_503890.1| - 0.0023 17.7 0.9 0.018 14.8 0.9 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_assoc_2 PF16193.5 gi|88603712|ref|YP_503890.1| - 0.011 16.0 0.2 0.032 14.6 0.2 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Sigma54_activat PF00158.26 gi|88603712|ref|YP_503890.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain TIP49_C PF17856.1 gi|88603712|ref|YP_503890.1| - 0.02 15.1 0.1 0.078 13.1 0.0 2.0 2 0 0 2 2 1 0 TIP49 AAA-lid domain AAA_5 PF07728.14 gi|88603712|ref|YP_503890.1| - 0.021 14.9 0.0 4.8 7.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|88603712|ref|YP_503890.1| - 0.041 13.1 0.6 2.7 7.1 0.0 2.6 2 1 1 3 3 3 0 KAP family P-loop domain AAA_2 PF07724.14 gi|88603712|ref|YP_503890.1| - 0.047 13.8 0.0 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|88603712|ref|YP_503890.1| - 0.054 12.5 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|88603712|ref|YP_503890.1| - 0.089 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region HATPase_c_3 PF13589.6 gi|88603712|ref|YP_503890.1| - 0.13 12.1 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TsaE PF02367.17 gi|88603712|ref|YP_503890.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Microtub_bd PF16796.5 gi|88603712|ref|YP_503890.1| - 0.15 12.0 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Microtubule binding AAA_24 PF13479.6 gi|88603712|ref|YP_503890.1| - 0.24 11.1 0.9 0.58 9.8 0.9 1.8 1 1 0 1 1 1 0 AAA domain AsnC_trans_reg PF01037.21 gi|88603713|ref|YP_503891.1| - 1.2e-11 44.4 0.0 1.8e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|88603713|ref|YP_503891.1| - 1.4e-11 44.0 0.2 5.6e-11 42.1 0.2 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|88603713|ref|YP_503891.1| - 7.2e-07 28.7 0.1 3.1e-06 26.6 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|88603713|ref|YP_503891.1| - 0.0017 18.3 0.2 0.0066 16.4 0.0 2.0 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_15 PF12324.8 gi|88603713|ref|YP_503891.1| - 0.037 14.0 0.0 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase MarR PF01047.22 gi|88603713|ref|YP_503891.1| - 0.073 13.0 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 MarR family Aminotran_1_2 PF00155.21 gi|88603714|ref|YP_503892.1| - 5.8e-70 236.3 0.0 6.6e-70 236.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|88603714|ref|YP_503892.1| - 2.7e-08 33.6 0.0 6.6e-08 32.3 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|88603714|ref|YP_503892.1| - 1.1e-05 24.5 0.0 1.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|88603714|ref|YP_503892.1| - 0.0072 15.1 0.0 0.0099 14.7 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|88603714|ref|YP_503892.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88603714|ref|YP_503892.1| - 0.14 10.7 0.0 0.47 8.9 0.0 1.7 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme AIRC PF00731.20 gi|88603715|ref|YP_503893.1| - 5.6e-48 162.3 0.4 6.8e-48 162.0 0.4 1.0 1 0 0 1 1 1 1 AIR carboxylase Aminotran_5 PF00266.19 gi|88603716|ref|YP_503894.1| - 4.7e-36 124.5 0.0 6.1e-36 124.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.19 gi|88603717|ref|YP_503895.1| - 5.4e-15 55.5 0.1 6.7e-15 55.2 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|88603718|ref|YP_503896.1| - 1.3e-33 115.8 0.3 1.4e-33 115.7 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|88603718|ref|YP_503896.1| - 0.087 12.1 0.6 0.57 9.5 0.3 2.1 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Aminotran_1_2 PF00155.21 gi|88603719|ref|YP_503897.1| - 1.6e-68 231.5 0.0 1.8e-68 231.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|88603719|ref|YP_503897.1| - 6.2e-07 29.0 0.0 9.6e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|88603719|ref|YP_503897.1| - 0.005 16.2 0.0 0.0091 15.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|88603719|ref|YP_503897.1| - 0.0053 15.8 0.0 0.044 12.7 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Polysacc_deac_1 PF01522.21 gi|88603719|ref|YP_503897.1| - 0.038 13.9 0.1 4.8 7.1 0.0 2.4 1 1 1 2 2 2 0 Polysaccharide deacetylase Cys_Met_Meta_PP PF01053.20 gi|88603719|ref|YP_503897.1| - 0.17 10.4 0.0 0.29 9.6 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_S8 PF00082.22 gi|88603720|ref|YP_503898.1| - 3.8e-40 138.0 5.0 3.5e-29 102.0 2.4 2.3 2 0 0 2 2 2 2 Subtilase family PEGA PF08308.11 gi|88603721|ref|YP_503899.1| - 1.4e-06 28.1 0.0 2.9e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 PEGA domain Glyco_hydro_43 PF04616.14 gi|88603721|ref|YP_503899.1| - 0.0019 17.6 0.0 0.0038 16.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 43 DUF2846 PF11008.8 gi|88603721|ref|YP_503899.1| - 0.14 12.2 0.0 0.61 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2846) BNR PF02012.20 gi|88603721|ref|YP_503899.1| - 0.28 11.3 5.2 0.39 10.9 0.0 3.5 4 0 0 4 4 4 0 BNR/Asp-box repeat TFIIB PF00382.19 gi|88603722|ref|YP_503900.1| - 4e-43 145.3 1.0 4.2e-21 74.8 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|88603722|ref|YP_503900.1| - 1.7e-17 62.6 0.1 1.7e-17 62.6 0.1 1.7 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|88603722|ref|YP_503900.1| - 1.8e-05 24.2 1.7 0.0034 16.9 0.3 3.2 2 1 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|88603722|ref|YP_503900.1| - 0.0002 21.2 0.4 0.00045 20.1 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_AsnC-type PF13404.6 gi|88603722|ref|YP_503900.1| - 0.0057 16.5 1.7 0.029 14.2 0.3 2.8 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain Ribosomal_S27e PF01667.17 gi|88603722|ref|YP_503900.1| - 0.0068 16.1 0.6 0.0068 16.1 0.6 1.8 2 0 0 2 2 2 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|88603722|ref|YP_503900.1| - 0.0081 16.5 0.6 0.081 13.3 0.3 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|88603722|ref|YP_503900.1| - 0.011 15.4 1.4 2.9 7.7 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain RPA_interact_C PF14768.6 gi|88603722|ref|YP_503900.1| - 0.013 16.1 0.1 1 10.0 0.0 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_31 PF13560.6 gi|88603722|ref|YP_503900.1| - 0.023 15.0 4.3 5.1 7.5 0.1 3.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|88603722|ref|YP_503900.1| - 0.037 14.1 0.4 2 8.5 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix Cyclin_C PF02984.19 gi|88603722|ref|YP_503900.1| - 0.041 14.0 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain UPF0253 PF06786.12 gi|88603722|ref|YP_503900.1| - 0.042 14.1 0.2 0.45 10.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) DZR PF12773.7 gi|88603722|ref|YP_503900.1| - 0.054 13.5 2.4 0.17 11.9 1.0 2.2 2 0 0 2 2 2 0 Double zinc ribbon Sigma70_r4_2 PF08281.12 gi|88603722|ref|YP_503900.1| - 0.088 12.5 0.7 0.74 9.5 0.1 2.8 2 2 0 2 2 2 0 Sigma-70, region 4 SR1P PF13790.6 gi|88603722|ref|YP_503900.1| - 0.089 12.9 0.9 7 6.8 0.3 2.5 2 0 0 2 2 2 0 SR1 protein Stc1 PF12898.7 gi|88603722|ref|YP_503900.1| - 0.096 13.2 1.5 1.2 9.7 1.3 2.3 2 0 0 2 2 2 0 Stc1 domain Elf1 PF05129.13 gi|88603722|ref|YP_503900.1| - 0.11 12.5 2.1 0.14 12.2 0.5 1.9 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Zn_ribbon_SprT PF17283.2 gi|88603722|ref|YP_503900.1| - 0.21 11.5 3.4 0.32 11.0 0.6 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|88603722|ref|YP_503900.1| - 0.28 11.3 7.6 0.25 11.5 0.9 2.9 2 1 1 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|88603722|ref|YP_503900.1| - 1.6 8.7 6.0 0.57 10.1 1.8 2.5 2 0 0 2 2 2 0 Nudix N-terminal Tnp_zf-ribbon_2 PF13842.6 gi|88603722|ref|YP_503900.1| - 3.6 8.5 8.2 2.4 9.0 0.5 3.1 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon PriA_CRR PF18319.1 gi|88603722|ref|YP_503900.1| - 4.5 7.4 5.4 2.8 8.0 0.6 2.4 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain RNase_P_p30 PF01876.16 gi|88603723|ref|YP_503901.1| - 5.9e-06 25.9 0.0 1.4e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 RNase P subunit p30 PHP PF02811.19 gi|88603723|ref|YP_503901.1| - 2.1e-05 24.9 0.0 2.2e-05 24.8 0.0 1.2 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|88603723|ref|YP_503901.1| - 0.0012 18.5 0.0 0.003 17.3 0.0 1.7 1 0 0 1 1 1 1 PHP-associated SRP19 PF01922.17 gi|88603724|ref|YP_503902.1| - 4.5e-15 56.4 0.0 5.2e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein cobW PF02492.19 gi|88603725|ref|YP_503903.1| - 1e-23 83.8 0.0 1.3e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|88603725|ref|YP_503903.1| - 2.3e-07 30.1 0.3 0.0025 16.8 0.0 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|88603725|ref|YP_503903.1| - 8.5e-05 22.5 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|88603725|ref|YP_503903.1| - 0.00014 21.5 0.0 0.00053 19.7 0.0 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|88603725|ref|YP_503903.1| - 0.0025 17.6 0.1 0.21 11.3 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|88603725|ref|YP_503903.1| - 0.015 15.2 0.1 0.036 14.0 0.0 1.6 2 0 0 2 2 2 0 NTPase RsgA_GTPase PF03193.16 gi|88603725|ref|YP_503903.1| - 0.058 13.3 0.0 12 5.8 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|88603725|ref|YP_503903.1| - 0.12 12.2 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|88603725|ref|YP_503903.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TsaE PF02367.17 gi|88603725|ref|YP_503903.1| - 0.19 11.8 0.2 0.43 10.6 0.0 1.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Ribosomal_S8e PF01201.22 gi|88603726|ref|YP_503904.1| - 4e-34 117.7 2.6 4.6e-34 117.5 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.9 gi|88603728|ref|YP_503906.1| - 9.8e-53 177.7 0.0 1.1e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_S6e PF01092.19 gi|88603729|ref|YP_503907.1| - 3.2e-41 140.2 0.1 3.7e-41 140.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU_D4 PF14578.6 gi|88603730|ref|YP_503908.1| - 1.6e-29 101.7 0.6 4.8e-29 100.1 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|88603730|ref|YP_503908.1| - 8.3e-29 100.5 0.0 2.7e-28 98.9 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|88603730|ref|YP_503908.1| - 1.9e-16 60.2 6.3 7.8e-11 42.2 0.4 2.7 2 0 0 2 2 2 2 Elongation factor Tu domain 2 IF-2 PF11987.8 gi|88603730|ref|YP_503908.1| - 2.4e-16 59.7 0.2 8.2e-16 58.0 0.0 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 MMR_HSR1 PF01926.23 gi|88603730|ref|YP_503908.1| - 8.8e-08 32.2 0.0 2.8e-07 30.6 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Poxvirus PF06227.12 gi|88603730|ref|YP_503908.1| - 0.0066 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 dsDNA Poxvirus Dynamin_N PF00350.23 gi|88603730|ref|YP_503908.1| - 0.025 14.6 0.1 0.48 10.5 0.1 2.4 2 0 0 2 2 2 0 Dynamin family Roc PF08477.13 gi|88603730|ref|YP_503908.1| - 0.028 14.6 0.0 0.059 13.6 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase 2TM PF13239.6 gi|88603731|ref|YP_503909.1| - 4.1e-29 100.7 4.7 4.6e-29 100.6 4.7 1.0 1 0 0 1 1 1 1 2TM domain FA_hydroxylase PF04116.13 gi|88603731|ref|YP_503909.1| - 0.028 14.8 0.0 0.031 14.6 0.0 1.0 1 0 0 1 1 1 0 Fatty acid hydroxylase superfamily Bac_rhamnosid6H PF17389.2 gi|88603731|ref|YP_503909.1| - 0.036 13.3 0.5 0.043 13.1 0.5 1.1 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain IlvGEDA_leader PF08046.11 gi|88603731|ref|YP_503909.1| - 0.1 12.0 4.0 0.16 11.5 4.0 1.2 1 0 0 1 1 1 0 IlvGEDA operon leader peptide Rhodanese PF00581.20 gi|88603732|ref|YP_503910.1| - 6.3e-17 62.0 0.0 5.1e-13 49.5 0.0 2.7 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|88603732|ref|YP_503910.1| - 8.7e-12 45.5 4.1 2.7e-11 43.8 4.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88603732|ref|YP_503910.1| - 0.0063 16.0 0.4 0.018 14.6 0.4 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ArsR PF09824.9 gi|88603733|ref|YP_503911.1| - 0.087 12.4 0.2 7.9 6.1 0.0 2.4 2 0 0 2 2 2 0 ArsR transcriptional regulator Thioredoxin PF00085.20 gi|88603734|ref|YP_503912.1| - 1.2e-30 105.5 0.0 1.5e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|88603734|ref|YP_503912.1| - 4.5e-09 36.7 0.0 2.9e-08 34.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|88603734|ref|YP_503912.1| - 2e-07 30.8 0.1 3.2e-07 30.1 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|88603734|ref|YP_503912.1| - 5e-05 22.8 0.0 7.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_6 PF13848.6 gi|88603734|ref|YP_503912.1| - 0.0002 21.4 0.0 0.00024 21.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|88603734|ref|YP_503912.1| - 0.00047 20.4 0.0 0.067 13.5 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like Phosducin PF02114.16 gi|88603734|ref|YP_503912.1| - 0.0013 17.8 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 Phosducin AhpC-TSA PF00578.21 gi|88603734|ref|YP_503912.1| - 0.0016 18.3 0.0 0.49 10.3 0.0 2.3 2 0 0 2 2 2 2 AhpC/TSA family HyaE PF07449.11 gi|88603734|ref|YP_503912.1| - 0.003 17.5 0.0 0.0045 16.9 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE TraF PF13728.6 gi|88603734|ref|YP_503912.1| - 0.0033 17.3 0.1 0.0083 16.0 0.0 1.7 1 1 1 2 2 2 1 F plasmid transfer operon protein Thioredoxin_5 PF13743.6 gi|88603734|ref|YP_503912.1| - 0.0053 16.4 0.0 0.79 9.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin Redoxin PF08534.10 gi|88603734|ref|YP_503912.1| - 0.0078 15.9 0.0 0.083 12.6 0.0 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_7 PF13899.6 gi|88603734|ref|YP_503912.1| - 0.026 14.7 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like MutS_IV PF05190.18 gi|88603734|ref|YP_503912.1| - 0.18 12.2 0.1 1.8 9.0 0.0 2.2 2 0 0 2 2 2 0 MutS family domain IV EF-1_beta_acid PF10587.9 gi|88603734|ref|YP_503912.1| - 0.26 11.8 1.9 0.58 10.7 1.9 1.6 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region Peptidase_S8 PF00082.22 gi|88603735|ref|YP_503913.1| - 7e-11 41.9 0.0 2.4e-10 40.2 0.0 1.9 2 1 0 2 2 2 1 Subtilase family PEGA PF08308.11 gi|88603736|ref|YP_503914.1| - 2.8e-62 206.5 8.7 3.9e-15 55.5 0.1 5.2 5 0 0 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.6 gi|88603736|ref|YP_503914.1| - 1.1e-09 38.4 4.7 0.21 11.9 0.0 6.0 6 2 0 6 6 6 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603736|ref|YP_503914.1| - 1.8e-06 27.8 0.2 2.3 8.3 0.0 5.0 4 3 1 5 5 5 3 CarboxypepD_reg-like domain TraK PF06586.11 gi|88603736|ref|YP_503914.1| - 0.042 13.5 0.3 1.1 8.9 0.0 2.6 2 1 1 3 3 3 0 TraK protein tRNA-synt_2 PF00152.20 gi|88603737|ref|YP_503915.1| - 1.2e-86 290.7 0.7 1.6e-86 290.3 0.7 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|88603737|ref|YP_503915.1| - 2.3e-16 59.5 0.4 5.5e-16 58.3 0.4 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|88603737|ref|YP_503915.1| - 1.2e-06 28.2 0.5 0.00054 19.5 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SBBP PF06739.11 gi|88603738|ref|YP_503916.1| - 4.9e-47 157.6 45.7 2.8e-09 36.8 0.2 8.2 7 0 0 7 7 7 7 Beta-propeller repeat PKD PF00801.20 gi|88603738|ref|YP_503916.1| - 1.7e-46 155.9 63.7 6.7e-14 51.5 8.0 6.9 6 1 0 6 6 6 5 PKD domain NHL PF01436.21 gi|88603738|ref|YP_503916.1| - 2.3 8.4 4.1 1.2e+02 3.0 0.0 4.6 5 0 0 5 5 5 0 NHL repeat PKD_3 PF16820.5 gi|88603738|ref|YP_503916.1| - 3 7.6 11.1 3.7 7.4 0.9 4.5 4 0 0 4 4 4 0 PKD-like domain PEGA PF08308.11 gi|88603739|ref|YP_503917.1| - 6.8e-23 80.3 1.5 4e-10 39.4 0.1 2.9 2 0 0 2 2 2 2 PEGA domain PKD PF00801.20 gi|88603739|ref|YP_503917.1| - 3.5e-11 42.8 1.5 1.6e-10 40.6 1.5 2.3 1 1 0 1 1 1 1 PKD domain Cohesin PF00963.18 gi|88603739|ref|YP_503917.1| - 0.0081 16.4 2.4 0.012 15.8 0.8 2.2 2 1 0 2 2 2 1 Cohesin domain Neisseria_TspB PF05616.13 gi|88603739|ref|YP_503917.1| - 0.018 13.5 4.4 0.026 13.0 4.4 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein TALPID3 PF15324.6 gi|88603739|ref|YP_503917.1| - 5.1 4.6 9.7 6.6 4.3 9.7 1.1 1 0 0 1 1 1 0 Hedgehog signalling target PEGA PF08308.11 gi|88603740|ref|YP_503918.1| - 2.6e-12 46.4 0.4 1.5e-11 44.0 0.1 2.4 2 0 0 2 2 2 1 PEGA domain PKD PF00801.20 gi|88603740|ref|YP_503918.1| - 2.1e-10 40.3 0.9 1e-09 38.1 0.9 2.3 1 0 0 1 1 1 1 PKD domain CarboxypepD_reg PF13620.6 gi|88603740|ref|YP_503918.1| - 0.032 14.5 2.1 0.3 11.4 0.0 3.4 3 1 1 4 4 4 0 Carboxypeptidase regulatory-like domain Sua5_yciO_yrdC PF01300.18 gi|88603741|ref|YP_503919.1| - 8.2e-33 113.4 0.0 1.6e-32 112.5 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|88603741|ref|YP_503919.1| - 1.1e-23 83.8 0.1 2.6e-23 82.6 0.1 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|88603741|ref|YP_503919.1| - 5.6e-23 80.4 10.8 4.9e-12 45.4 1.6 2.6 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|88603741|ref|YP_503919.1| - 1.8e-18 66.7 0.0 3.2e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|88603741|ref|YP_503919.1| - 3.8e-07 30.1 0.1 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family Carbam_trans_N PF02543.15 gi|88603741|ref|YP_503919.1| - 0.0073 16.0 0.1 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus Zn_ribbon_SprT PF17283.2 gi|88603741|ref|YP_503919.1| - 0.15 12.0 7.0 0.18 11.7 1.1 3.0 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|88603741|ref|YP_503919.1| - 0.32 11.1 2.2 3.2 7.8 0.1 2.5 2 0 0 2 2 2 0 Double zinc ribbon ArsR PF09824.9 gi|88603742|ref|YP_503920.1| - 1.2e-61 207.0 0.0 1.3e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|88603742|ref|YP_503920.1| - 0.026 14.0 0.0 0.068 12.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|88603742|ref|YP_503920.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|88603742|ref|YP_503920.1| - 0.2 11.5 0.0 0.67 9.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|88603743|ref|YP_503921.1| - 1e-07 31.4 0.0 2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|88603743|ref|YP_503921.1| - 4.4e-07 29.7 0.1 9.2e-07 28.7 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|88603743|ref|YP_503921.1| - 1e-05 25.4 0.0 9e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|88603743|ref|YP_503921.1| - 2.7e-05 24.0 0.0 8e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|88603743|ref|YP_503921.1| - 0.00061 19.9 0.0 0.0014 18.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_IclR PF09339.10 gi|88603743|ref|YP_503921.1| - 0.0027 17.5 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|88603743|ref|YP_503921.1| - 0.0036 17.2 0.8 0.0059 16.5 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_13 PF11972.8 gi|88603743|ref|YP_503921.1| - 0.0041 17.1 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|88603743|ref|YP_503921.1| - 0.0071 16.7 0.0 0.014 15.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_3 PF01381.22 gi|88603743|ref|YP_503921.1| - 0.0094 16.0 0.1 0.028 14.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 gi|88603743|ref|YP_503921.1| - 0.022 14.6 0.0 0.049 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.6 gi|88603743|ref|YP_503921.1| - 0.03 14.8 0.1 0.17 12.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|88603743|ref|YP_503921.1| - 0.055 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.6 gi|88603743|ref|YP_503921.1| - 0.076 13.1 0.0 0.26 11.5 0.0 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain TetR_C_7 PF14246.6 gi|88603743|ref|YP_503921.1| - 0.095 12.7 0.1 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain DEAD PF00270.29 gi|88603744|ref|YP_503922.1| - 6.7e-20 71.6 0.0 1.6e-19 70.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|88603744|ref|YP_503922.1| - 1.5e-16 60.7 0.0 4.6e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88603744|ref|YP_503922.1| - 1.6e-09 38.0 0.0 2.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Ammonium_transp PF00909.21 gi|88603745|ref|YP_503923.1| - 7e-127 423.4 35.2 7.9e-127 423.2 35.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|88603746|ref|YP_503924.1| - 3.9e-36 123.7 2.3 4.3e-36 123.6 2.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ABC_ATPase PF09818.9 gi|88603746|ref|YP_503924.1| - 0.025 13.4 0.1 0.035 12.9 0.1 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class tRNA-synt_2b PF00587.25 gi|88603748|ref|YP_503926.1| - 3.3e-41 141.2 0.2 4.9e-41 140.7 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|88603748|ref|YP_503926.1| - 1.2e-25 89.8 4.0 1.5e-25 89.5 2.6 1.9 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Ribosomal_S3Ae PF01015.18 gi|88603749|ref|YP_503927.1| - 2.4e-57 193.8 0.4 2.9e-57 193.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Acyl_transf_1 PF00698.21 gi|88603749|ref|YP_503927.1| - 0.07 12.6 0.0 0.15 11.5 0.0 1.4 1 1 1 2 2 2 0 Acyl transferase domain Pcc1 PF09341.10 gi|88603750|ref|YP_503928.1| - 7.3e-05 22.8 0.1 0.0001 22.4 0.1 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 PapB PF03333.13 gi|88603750|ref|YP_503928.1| - 0.0078 16.2 0.1 0.0091 16.0 0.1 1.2 1 0 0 1 1 1 1 Adhesin biosynthesis transcription regulatory protein DHHA1 PF02272.19 gi|88603751|ref|YP_503929.1| - 2.6e-10 40.9 0.0 4.1e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|88603751|ref|YP_503929.1| - 0.13 12.5 0.2 2.6 8.3 0.0 2.7 1 1 1 2 2 2 0 DHH family Ribosomal_S13_N PF08069.12 gi|88603752|ref|YP_503930.1| - 5.1e-26 90.5 1.8 5.9e-26 90.3 0.6 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|88603752|ref|YP_503930.1| - 6.6e-14 51.9 1.4 1.4e-13 50.9 1.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S15 Radical_SAM PF04055.21 gi|88603753|ref|YP_503931.1| - 6.1e-19 69.0 5.6 5.6e-17 62.6 5.5 3.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88603753|ref|YP_503931.1| - 0.15 12.2 1.3 2.6 8.2 1.9 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88603753|ref|YP_503931.1| - 0.19 12.0 0.2 0.58 10.4 0.2 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF3821 PF12863.7 gi|88603754|ref|YP_503932.1| - 4.7e-80 268.4 17.3 1.4e-78 263.6 7.4 3.5 4 1 0 4 4 4 2 Domain of unknown function (DUF3821) Ig_3 PF13927.6 gi|88603754|ref|YP_503932.1| - 0.00022 21.7 0.5 0.24 12.0 0.0 4.9 5 0 0 5 5 5 1 Immunoglobulin domain PilA4 PF18682.1 gi|88603754|ref|YP_503932.1| - 0.39 11.1 2.9 0.92 9.9 0.2 3.2 3 0 0 3 3 3 0 Pilin A4 Aminotran_1_2 PF00155.21 gi|88603755|ref|YP_503933.1| - 2e-28 99.6 0.0 2.5e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|88603755|ref|YP_503933.1| - 0.011 14.5 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|88603755|ref|YP_503933.1| - 0.096 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III Conotoxin PF02950.17 gi|88603756|ref|YP_503934.1| - 0.095 13.7 0.5 0.095 13.7 0.5 1.8 2 0 0 2 2 2 0 Conotoxin Bunya_G1 PF03557.15 gi|88603757|ref|YP_503935.1| - 0.068 11.2 0.1 0.085 10.8 0.1 1.1 1 0 0 1 1 1 0 Bunyavirus glycoprotein G1 Antimicrobial_7 PF08102.11 gi|88603757|ref|YP_503935.1| - 0.17 12.2 0.1 0.28 11.4 0.1 1.3 1 0 0 1 1 1 0 Scorpion antimicrobial peptide ABC2_membrane PF01061.24 gi|88603758|ref|YP_503936.1| - 7.4e-23 81.1 20.9 7.4e-23 81.1 20.9 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88603758|ref|YP_503936.1| - 1.3e-08 34.3 25.9 1.7e-08 34.0 25.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|88603758|ref|YP_503936.1| - 0.18 11.1 17.9 0.28 10.4 17.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2109 PF09882.9 gi|88603758|ref|YP_503936.1| - 0.64 10.1 4.3 0.82 9.7 0.1 2.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2109) ABC_tran PF00005.27 gi|88603759|ref|YP_503937.1| - 7.9e-31 107.4 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88603759|ref|YP_503937.1| - 2e-13 50.8 0.5 3.1e-08 33.8 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|88603759|ref|YP_503937.1| - 1.2e-05 25.2 0.1 0.0016 18.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|88603759|ref|YP_503937.1| - 0.0047 17.5 0.1 0.01 16.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88603759|ref|YP_503937.1| - 0.04 13.7 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|88603759|ref|YP_503937.1| - 0.042 13.6 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|88603759|ref|YP_503937.1| - 0.19 11.1 0.2 15 5.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SPP PF06550.11 gi|88603760|ref|YP_503938.1| - 6.1e-77 258.9 18.7 8.1e-77 258.5 18.7 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|88603760|ref|YP_503938.1| - 3e-06 27.0 11.7 4.2e-05 23.2 11.7 2.2 1 1 0 1 1 1 1 Signal peptide peptidase Presenilin PF01080.17 gi|88603760|ref|YP_503938.1| - 1.8e-05 23.7 20.0 0.025 13.3 17.3 2.3 2 1 0 2 2 2 2 Presenilin DUF3481 PF11980.8 gi|88603760|ref|YP_503938.1| - 3.3 7.5 4.9 2.7 7.7 0.1 2.7 2 0 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein CD47 PF04549.14 gi|88603761|ref|YP_503939.1| - 0.003 17.8 2.1 0.0035 17.6 2.1 1.1 1 0 0 1 1 1 1 CD47 transmembrane region XPG_I PF00867.18 gi|88603762|ref|YP_503940.1| - 1.9e-26 92.3 0.0 3.2e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|88603762|ref|YP_503940.1| - 1.9e-15 57.2 0.0 3.5e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain PKD PF00801.20 gi|88603763|ref|YP_503941.1| - 2.5e-44 149.0 19.1 1.6e-07 31.1 0.0 8.4 8 0 0 8 8 8 8 PKD domain ThiC-associated PF13667.6 gi|88603763|ref|YP_503941.1| - 0.027 14.3 0.0 0.24 11.3 0.0 2.5 2 0 0 2 2 2 0 ThiC-associated domain PKD_3 PF16820.5 gi|88603763|ref|YP_503941.1| - 0.034 13.9 2.2 4 7.2 0.0 4.3 6 0 0 6 6 6 0 PKD-like domain CDP-OH_P_transf PF01066.21 gi|88603764|ref|YP_503942.1| - 5.1e-08 33.6 2.4 5.1e-08 33.6 2.4 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|88603765|ref|YP_503943.1| - 1.1e-22 80.9 0.0 1.8e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|88603765|ref|YP_503943.1| - 2.1e-05 24.4 0.1 0.11 12.4 0.0 2.2 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|88603765|ref|YP_503943.1| - 2.2e-05 24.7 0.0 6e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|88603765|ref|YP_503943.1| - 5.9e-05 23.3 0.0 0.013 15.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|88603765|ref|YP_503943.1| - 0.0036 17.2 0.1 1.4 8.7 0.1 2.1 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_16 PF13191.6 gi|88603765|ref|YP_503943.1| - 0.0045 17.4 0.1 0.0046 17.4 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|88603765|ref|YP_503943.1| - 0.0067 16.8 0.2 0.013 15.9 0.1 1.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|88603765|ref|YP_503943.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|88603765|ref|YP_503943.1| - 0.031 14.0 0.0 0.05 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain CoaE PF01121.20 gi|88603765|ref|YP_503943.1| - 0.045 13.4 0.1 0.16 11.7 0.1 1.8 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_17 PF13207.6 gi|88603765|ref|YP_503943.1| - 0.1 13.0 0.7 7.4 7.0 0.1 2.4 1 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|88603765|ref|YP_503943.1| - 0.1 11.9 0.1 0.2 10.9 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 gi|88603765|ref|YP_503943.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_2 PF03668.15 gi|88603765|ref|YP_503943.1| - 0.12 11.7 0.2 0.23 10.7 0.2 1.5 1 1 0 1 1 1 0 P-loop ATPase protein family KTI12 PF08433.10 gi|88603765|ref|YP_503943.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Aminotran_1_2 PF00155.21 gi|88603766|ref|YP_503944.1| - 1.5e-46 159.2 0.0 1.7e-46 159.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|88603766|ref|YP_503944.1| - 6.7e-07 28.5 0.0 9.5e-07 28.0 0.0 1.1 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|88603766|ref|YP_503944.1| - 0.00067 18.3 0.0 0.0016 17.1 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|88603766|ref|YP_503944.1| - 0.0018 17.3 0.0 0.0027 16.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|88603767|ref|YP_503945.1| - 1.3e-103 346.8 0.2 1.6e-103 346.5 0.2 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|88603767|ref|YP_503945.1| - 0.00036 19.6 0.0 0.00077 18.5 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|88603767|ref|YP_503945.1| - 0.002 17.5 0.0 0.0043 16.4 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|88603767|ref|YP_503945.1| - 0.019 14.1 0.1 0.17 11.0 0.1 2.3 1 1 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|88603767|ref|YP_503945.1| - 0.021 14.1 0.0 0.077 12.3 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase GMP_synt_C PF00958.22 gi|88603768|ref|YP_503946.1| - 2.4e-26 91.6 0.0 6.2e-26 90.3 0.0 1.7 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|88603768|ref|YP_503946.1| - 4.4e-12 45.7 0.0 5.3e-07 29.0 0.0 2.1 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|88603768|ref|YP_503946.1| - 2.9e-06 26.9 0.0 0.0022 17.5 0.0 2.1 1 1 1 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|88603768|ref|YP_503946.1| - 1.1e-05 24.4 0.1 0.0017 17.2 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|88603768|ref|YP_503946.1| - 0.0047 16.6 0.0 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.19 gi|88603768|ref|YP_503946.1| - 0.0097 16.0 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|88603768|ref|YP_503946.1| - 0.015 14.6 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|88603768|ref|YP_503946.1| - 0.19 11.5 0.0 0.27 11.0 0.0 1.4 1 1 0 1 1 1 0 PP-loop family CTP_synth_N PF06418.14 gi|88603769|ref|YP_503947.1| - 2.1e-120 401.0 0.1 3.2e-120 400.4 0.1 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|88603769|ref|YP_503947.1| - 7.6e-52 175.9 0.0 1.4e-51 175.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88603769|ref|YP_503947.1| - 9.9e-06 25.5 0.0 0.00012 22.0 0.0 2.5 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|88603769|ref|YP_503947.1| - 8.6e-05 22.6 0.0 0.00012 22.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain 4HBT PF03061.22 gi|88603770|ref|YP_503948.1| - 2.6e-10 40.5 0.2 3.9e-10 40.0 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|88603770|ref|YP_503948.1| - 9.3e-05 22.8 0.1 0.0001 22.7 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Glycos_transf_2 PF00535.26 gi|88603771|ref|YP_503949.1| - 3.3e-20 72.6 0.0 3.9e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88603771|ref|YP_503949.1| - 1.5e-09 38.1 0.0 2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Histidinol_dh PF00815.20 gi|88603772|ref|YP_503950.1| - 1.1e-166 554.9 0.4 1.3e-166 554.7 0.4 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase CheW PF01584.19 gi|88603773|ref|YP_503951.1| - 1.2e-18 67.1 0.0 1.3e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 gi|88603774|ref|YP_503952.1| - 3.1e-19 69.0 0.1 4.1e-19 68.6 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain DUF4795 PF16043.5 gi|88603775|ref|YP_503953.1| - 0.0022 17.6 0.3 0.0041 16.7 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) FMN_red PF03358.15 gi|88603776|ref|YP_503954.1| - 3.1e-31 108.2 0.0 4.2e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88603776|ref|YP_503954.1| - 5.9e-10 39.2 0.0 7.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Peptidase_M50 PF02163.22 gi|88603777|ref|YP_503955.1| - 5.1e-05 22.7 13.3 0.0056 16.0 2.2 3.3 2 1 1 3 3 3 3 Peptidase family M50 NADH-u_ox-rdase PF10785.9 gi|88603777|ref|YP_503955.1| - 2.3 9.0 7.5 1e+02 3.6 5.9 3.3 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit RE_XcyI PF09571.10 gi|88603778|ref|YP_503956.1| - 7.3e-25 87.8 0.0 8.6e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 XcyI restriction endonuclease DDE_Tnp_1 PF01609.21 gi|88603779|ref|YP_503957.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88603779|ref|YP_503957.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88603779|ref|YP_503957.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) tRNA_anti-codon PF01336.25 gi|88603782|ref|YP_503960.1| - 5.1e-17 61.6 0.0 0.0029 17.5 0.0 4.9 5 0 0 5 5 5 4 OB-fold nucleic acid binding domain CbiZ PF01955.18 gi|88603783|ref|YP_503961.1| - 4.6e-39 134.5 0.4 5.8e-39 134.2 0.4 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.12 gi|88603783|ref|YP_503961.1| - 4.1e-28 97.1 6.0 1.3e-27 95.5 5.1 2.0 2 0 0 2 2 2 1 Cysteine-rich small domain NRDD PF13597.6 gi|88603784|ref|YP_503962.1| - 5.7e-13 48.5 3.8 5.7e-13 48.5 3.8 2.2 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.15 gi|88603784|ref|YP_503962.1| - 0.012 15.2 2.2 0.012 15.2 2.2 3.1 2 1 1 3 3 3 0 RecR protein DZR PF12773.7 gi|88603784|ref|YP_503962.1| - 0.015 15.3 17.8 0.44 10.6 6.5 2.6 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|88603784|ref|YP_503962.1| - 2 9.2 16.5 1 10.2 1.9 3.1 3 0 0 3 3 3 0 zinc-ribbon family FYVE PF01363.21 gi|88603784|ref|YP_503962.1| - 2.5 8.3 16.5 2.4 8.3 5.2 2.5 1 1 1 2 2 2 0 FYVE zinc finger zinc-ribbons_6 PF07191.12 gi|88603784|ref|YP_503962.1| - 5.2 7.1 21.4 0.23 11.5 4.6 2.8 1 1 1 2 2 2 0 zinc-ribbons OMPdecase PF00215.24 gi|88603785|ref|YP_503963.1| - 2.3e-36 125.5 0.0 2.6e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DS PF01916.17 gi|88603786|ref|YP_503964.1| - 3.8e-97 325.0 0.1 4.3e-97 324.8 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1743 PF08489.11 gi|88603787|ref|YP_503965.1| - 3.3e-35 120.6 0.0 8.2e-35 119.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti_2 PF13742.6 gi|88603787|ref|YP_503965.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|88603787|ref|YP_503965.1| - 0.033 14.1 0.4 0.076 12.9 0.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.10 gi|88603787|ref|YP_503965.1| - 0.053 13.3 0.3 0.088 12.6 0.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc-ribbons_6 PF07191.12 gi|88603787|ref|YP_503965.1| - 0.066 13.2 0.6 0.13 12.2 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|88603787|ref|YP_503965.1| - 0.083 12.9 3.4 0.23 11.4 3.4 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain tRNA_anti-codon PF01336.25 gi|88603787|ref|YP_503965.1| - 0.21 11.6 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Zn_ribbon_recom PF13408.6 gi|88603787|ref|YP_503965.1| - 1.7 9.3 5.2 3.8 8.1 5.2 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HTH_3 PF01381.22 gi|88603788|ref|YP_503966.1| - 1.5e-08 34.5 0.1 4.4e-08 33.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|88603788|ref|YP_503966.1| - 1.4e-06 28.2 0.7 7.5e-06 25.9 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|88603788|ref|YP_503966.1| - 2.9e-06 27.5 2.3 6.3e-06 26.4 0.8 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|88603788|ref|YP_503966.1| - 0.00047 20.1 0.2 0.0012 18.8 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|88603788|ref|YP_503966.1| - 0.026 14.4 0.2 0.059 13.2 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|88603788|ref|YP_503966.1| - 0.055 13.0 0.2 0.21 11.2 0.2 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 Cpn60_TCP1 PF00118.24 gi|88603789|ref|YP_503967.1| - 5.1e-182 605.9 21.0 5.9e-182 605.7 21.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4136 PF13590.6 gi|88603789|ref|YP_503967.1| - 0.22 12.1 0.1 16 6.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4136) CheW PF01584.19 gi|88603790|ref|YP_503968.1| - 7.1e-31 106.7 0.4 8.6e-31 106.4 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|88603791|ref|YP_503969.1| - 3.3e-37 127.9 21.1 3.3e-37 127.9 21.1 5.2 2 1 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Response_reg PF00072.24 gi|88603791|ref|YP_503969.1| - 2.4e-15 56.6 0.1 2.2e-14 53.6 0.0 2.7 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|88603791|ref|YP_503969.1| - 1.1e-11 44.9 0.0 6.8e-05 23.1 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|88603791|ref|YP_503969.1| - 8.1e-10 38.5 0.0 0.0033 17.4 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|88603791|ref|YP_503969.1| - 2e-09 37.5 0.0 0.0012 18.9 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|88603791|ref|YP_503969.1| - 4e-07 30.3 0.0 0.00035 20.8 0.0 2.8 2 1 0 2 2 2 2 PAS fold Serine_rich PF08824.10 gi|88603791|ref|YP_503969.1| - 0.0085 16.1 5.4 0.085 12.9 0.2 4.2 3 1 0 4 4 4 1 Serine rich protein interaction domain DUF948 PF06103.11 gi|88603791|ref|YP_503969.1| - 0.033 14.4 32.8 0.035 14.4 1.8 6.0 5 2 0 6 6 6 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|88603791|ref|YP_503969.1| - 0.23 11.5 40.5 0.24 11.4 9.2 5.2 4 1 0 5 5 5 0 Laminin Domain II Collagen_mid PF15984.5 gi|88603791|ref|YP_503969.1| - 0.23 11.2 12.1 0.12 12.1 3.2 2.7 2 2 0 2 2 2 0 Bacterial collagen, middle region Staph_haemo PF05480.11 gi|88603791|ref|YP_503969.1| - 2.1 8.2 5.6 0.62 9.9 0.2 2.9 3 0 0 3 3 3 0 Staphylococcus haemolytic protein Fib_alpha PF08702.10 gi|88603791|ref|YP_503969.1| - 3.8 7.7 33.7 0.17 12.0 4.1 5.5 4 2 2 6 6 6 0 Fibrinogen alpha/beta chain family CAP PF00188.26 gi|88603792|ref|YP_503970.1| - 1.8e-13 51.4 0.0 3.7e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Cysteine-rich secretory protein family TusA PF01206.17 gi|88603792|ref|YP_503970.1| - 0.2 11.5 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 Sulfurtransferase TusA Acetyltransf_1 PF00583.25 gi|88603793|ref|YP_503971.1| - 6.3e-21 74.8 0.0 7.7e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|88603793|ref|YP_503971.1| - 2.4e-17 63.1 0.0 3.1e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|88603793|ref|YP_503971.1| - 2.3e-15 56.7 0.0 3.2e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88603793|ref|YP_503971.1| - 5.9e-10 39.0 0.0 9.5e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|88603793|ref|YP_503971.1| - 6e-05 23.2 0.0 6.8e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|88603793|ref|YP_503971.1| - 0.00014 22.0 0.0 0.00029 20.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|88603793|ref|YP_503971.1| - 0.00052 19.7 0.0 0.0026 17.4 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|88603793|ref|YP_503971.1| - 0.0055 16.4 0.0 0.0061 16.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ DUF1015 PF06245.11 gi|88603794|ref|YP_503972.1| - 3.8e-108 361.8 0.0 4.3e-108 361.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|88603794|ref|YP_503972.1| - 0.022 14.9 0.1 0.099 12.7 0.1 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease KHA PF11834.8 gi|88603794|ref|YP_503972.1| - 0.099 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 KHA, dimerisation domain of potassium ion channel PPC PF04151.15 gi|88603796|ref|YP_503974.1| - 0.011 16.8 1.5 0.011 16.8 1.5 2.5 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain PPC PF04151.15 gi|88603797|ref|YP_503975.1| - 0.0013 19.8 1.6 0.0013 19.8 1.6 3.1 3 0 0 3 3 3 1 Bacterial pre-peptidase C-terminal domain TP_methylase PF00590.20 gi|88603798|ref|YP_503976.1| - 8.1e-52 176.3 0.4 9.3e-52 176.0 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|88603798|ref|YP_503976.1| - 4.1e-05 24.0 0.2 0.00016 22.1 0.2 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Porphobil_deam PF01379.20 gi|88603799|ref|YP_503977.1| - 3.2e-63 212.9 0.0 4.7e-63 212.4 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|88603799|ref|YP_503977.1| - 1.6e-06 28.4 0.0 3.1e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.20 gi|88603799|ref|YP_503977.1| - 0.064 12.7 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Aminotran_3 PF00202.21 gi|88603800|ref|YP_503978.1| - 1.4e-61 208.4 0.0 3.3e-61 207.1 0.0 1.5 1 1 1 2 2 2 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|88603800|ref|YP_503978.1| - 0.19 10.8 0.0 0.86 8.7 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II ALAD PF00490.21 gi|88603801|ref|YP_503979.1| - 1.1e-127 425.6 0.0 1.3e-127 425.4 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.20 gi|88603802|ref|YP_503980.1| - 8.6e-38 129.5 0.0 1.7e-37 128.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|88603802|ref|YP_503980.1| - 1.3e-27 96.3 0.0 3.5e-27 95.0 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|88603802|ref|YP_503980.1| - 5e-12 46.1 0.4 1.1e-11 45.0 0.4 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|88603802|ref|YP_503980.1| - 0.0002 21.9 0.0 0.0005 20.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|88603802|ref|YP_503980.1| - 0.00045 20.4 0.0 0.0013 18.9 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|88603802|ref|YP_503980.1| - 0.0075 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|88603802|ref|YP_503980.1| - 0.017 14.6 0.2 0.03 13.8 0.2 1.4 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 gi|88603802|ref|YP_503980.1| - 0.048 13.9 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain TAN PF11640.8 gi|88603802|ref|YP_503980.1| - 0.22 11.6 1.4 0.44 10.7 1.4 1.4 1 0 0 1 1 1 0 Telomere-length maintenance and DNA damage repair NAD_binding_7 PF13241.6 gi|88603803|ref|YP_503981.1| - 2.4e-19 69.7 0.0 8.3e-19 68.0 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|88603803|ref|YP_503981.1| - 1.7e-05 24.2 0.2 3.6e-05 23.1 0.2 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Shikimate_DH PF01488.20 gi|88603803|ref|YP_503981.1| - 0.045 13.8 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|88603803|ref|YP_503981.1| - 0.048 13.0 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1641 PF07849.11 gi|88603803|ref|YP_503981.1| - 0.076 12.9 0.0 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) TrkA_N PF02254.18 gi|88603803|ref|YP_503981.1| - 0.16 12.3 0.3 0.77 10.0 0.2 2.2 2 1 0 2 2 2 0 TrkA-N domain MqsA_antitoxin PF15731.5 gi|88603804|ref|YP_503982.1| - 1.2e-05 25.4 0.1 1.3e-05 25.3 0.1 1.0 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA YokU PF14122.6 gi|88603804|ref|YP_503982.1| - 0.00076 19.4 0.2 0.0009 19.2 0.2 1.1 1 0 0 1 1 1 1 YokU-like protein, putative antitoxin YhfH PF14149.6 gi|88603804|ref|YP_503982.1| - 0.059 13.4 1.3 0.086 12.8 0.0 1.9 2 0 0 2 2 2 0 YhfH-like protein Toxin_trans PF07952.12 gi|88603804|ref|YP_503982.1| - 0.12 11.5 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain PhnA_Zn_Ribbon PF08274.12 gi|88603804|ref|YP_503982.1| - 1.2 9.2 5.2 1.2 9.2 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PemK_toxin PF02452.17 gi|88603805|ref|YP_503983.1| - 6.4e-09 36.2 0.0 7.1e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system DUF104 PF01954.16 gi|88603806|ref|YP_503984.1| - 0.011 16.2 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF104 ParE_toxin PF05016.15 gi|88603808|ref|YP_503986.1| - 1.6e-08 35.0 0.4 2e-08 34.7 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RHH_6 PF16762.5 gi|88603809|ref|YP_503987.1| - 0.00029 21.4 0.0 0.00036 21.1 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain Spo0A_C PF08769.11 gi|88603809|ref|YP_503987.1| - 0.02 15.0 0.1 0.025 14.7 0.1 1.1 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal UPF0137 PF03677.13 gi|88603809|ref|YP_503987.1| - 0.068 13.0 0.0 0.077 12.8 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0137) Carb_bind PF10645.9 gi|88603810|ref|YP_503988.1| - 4.1e-05 23.7 65.1 0.076 13.2 16.7 5.0 1 1 5 6 6 6 5 Carbohydrate binding IGFL PF14653.6 gi|88603810|ref|YP_503988.1| - 7.3e-05 22.7 50.5 0.0055 16.6 11.2 4.5 1 1 4 5 5 5 4 Insulin growth factor-like family DUF1890 PF09001.11 gi|88603811|ref|YP_503989.1| - 2.4e-53 180.3 0.2 2.7e-53 180.1 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF853 PF05872.12 gi|88603811|ref|YP_503989.1| - 0.023 13.3 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Glyoxalase_4 PF13669.6 gi|88603811|ref|YP_503989.1| - 0.093 13.0 0.1 0.57 10.5 0.1 2.0 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF1894 PF08979.11 gi|88603812|ref|YP_503990.1| - 2.2e-33 114.5 0.0 2.4e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) RibD_C PF01872.17 gi|88603813|ref|YP_503991.1| - 4.5e-51 173.5 0.1 5e-51 173.4 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain FbpC_C_terminal PF17845.1 gi|88603813|ref|YP_503991.1| - 0.032 14.3 0.8 0.82 9.8 0.0 2.9 3 1 0 3 3 3 0 FbpC C-terminal regulatory nucleotide binding domain Response_reg PF00072.24 gi|88603814|ref|YP_503992.1| - 5.3e-22 78.1 0.1 5.9e-22 78.0 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GATase PF00117.28 gi|88603815|ref|YP_503993.1| - 1.1e-23 84.0 0.0 1.4e-23 83.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|88603815|ref|YP_503993.1| - 2.4e-06 27.4 0.2 9.2e-06 25.6 0.1 2.0 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|88603815|ref|YP_503993.1| - 8.3e-05 22.5 0.0 0.00029 20.7 0.0 1.7 2 0 0 2 2 2 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|88603815|ref|YP_503993.1| - 0.0002 21.1 0.1 0.00028 20.5 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|88603815|ref|YP_503993.1| - 0.074 12.1 0.7 2 7.4 0.7 2.2 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Auxin_resp PF06507.13 gi|88603815|ref|YP_503993.1| - 0.17 12.2 0.0 6.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Auxin response factor PAPS_reduct PF01507.19 gi|88603816|ref|YP_503994.1| - 1.8e-40 138.8 0.0 2.8e-40 138.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|88603816|ref|YP_503994.1| - 5.7e-19 67.9 0.1 1.1e-18 67.0 0.1 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|88603816|ref|YP_503994.1| - 0.073 13.3 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain MNHE PF01899.16 gi|88603817|ref|YP_503995.1| - 4.1e-35 120.7 0.4 5.1e-35 120.4 0.4 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|88603818|ref|YP_503996.1| - 1.1e-20 73.8 5.1 1.1e-20 73.8 5.1 2.1 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 gi|88603818|ref|YP_503996.1| - 1.7 8.4 5.3 3 7.6 5.3 1.5 1 1 0 1 1 1 0 Inclusion membrane protein D DUF2070 PF09843.9 gi|88603818|ref|YP_503996.1| - 8.1 4.6 9.9 8.9 4.5 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PhaG_MnhG_YufB PF03334.14 gi|88603819|ref|YP_503997.1| - 1.1e-24 86.4 10.0 1.3e-24 86.2 10.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit SLATT_5 PF18160.1 gi|88603819|ref|YP_503997.1| - 0.011 15.0 0.8 0.02 14.2 0.8 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 Tetraspanin PF00335.20 gi|88603819|ref|YP_503997.1| - 0.016 14.9 2.7 0.022 14.5 2.7 1.2 1 0 0 1 1 1 0 Tetraspanin family LtrA PF06772.11 gi|88603819|ref|YP_503997.1| - 0.15 11.2 6.1 0.19 10.9 6.1 1.1 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) Cation_ATPase_C PF00689.21 gi|88603819|ref|YP_503997.1| - 0.56 9.9 6.9 0.99 9.1 6.9 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF4131 PF13567.6 gi|88603819|ref|YP_503997.1| - 0.63 9.7 2.8 1.1 8.9 2.6 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF373 PF04123.13 gi|88603819|ref|YP_503997.1| - 0.81 9.1 6.4 0.95 8.8 6.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3784 PF12650.7 gi|88603819|ref|YP_503997.1| - 2.8 8.2 7.7 1.2 9.4 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF4040 PF13244.6 gi|88603820|ref|YP_503998.1| - 2.3e-19 69.3 7.8 2.8e-19 69.0 7.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4491 PF14898.6 gi|88603820|ref|YP_503998.1| - 0.31 11.5 4.2 0.26 11.8 3.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4491) MnhB PF04039.13 gi|88603822|ref|YP_504000.1| - 8.7e-28 97.1 15.3 1.1e-27 96.7 15.3 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2105 PF09878.9 gi|88603822|ref|YP_504000.1| - 0.058 13.1 2.8 0.091 12.5 2.8 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) Oxidored_q2 PF00420.24 gi|88603823|ref|YP_504001.1| - 1e-26 92.6 8.0 1.2e-26 92.4 8.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|88603823|ref|YP_504001.1| - 0.0012 18.8 5.0 0.0012 18.8 5.0 2.2 1 1 0 2 2 2 1 Predicted membrane protein (DUF2108) SKG6 PF08693.10 gi|88603823|ref|YP_504001.1| - 8.8 5.8 8.2 1.5 8.2 0.9 2.3 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Proton_antipo_M PF00361.20 gi|88603824|ref|YP_504002.1| - 1.1e-49 169.3 32.1 1.1e-49 169.3 32.1 2.7 3 1 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|88603824|ref|YP_504002.1| - 9.2e-08 32.0 0.1 9.2e-08 32.0 0.1 4.5 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3328 PF11807.8 gi|88603825|ref|YP_504003.1| - 0.022 14.6 1.2 0.023 14.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3328) Cytomega_TRL10 PF06084.11 gi|88603825|ref|YP_504003.1| - 0.24 11.4 1.9 0.27 11.3 0.1 1.8 2 0 0 2 2 2 0 Cytomegalovirus TRL10 protein SPC12 PF06645.13 gi|88603825|ref|YP_504003.1| - 1.8 8.7 8.2 9.7 6.4 1.4 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Oxidored_q6 PF01058.22 gi|88603826|ref|YP_504004.1| - 3.2e-27 94.9 0.8 3.8e-27 94.7 0.8 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|88603827|ref|YP_504005.1| - 5.2e-23 82.0 0.0 7.3e-23 81.5 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CRT10 PF08728.10 gi|88603827|ref|YP_504005.1| - 0.31 9.1 0.0 0.33 9.1 0.0 1.0 1 0 0 1 1 1 0 CRT10 Complex1_49kDa PF00346.19 gi|88603828|ref|YP_504006.1| - 2.2e-70 236.9 0.5 6.7e-69 232.0 0.5 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|88603828|ref|YP_504006.1| - 9e-18 64.4 3.7 7.7e-13 48.2 0.8 2.4 2 1 0 2 2 2 2 Nickel-dependent hydrogenase DUF4959 PF16323.5 gi|88603828|ref|YP_504006.1| - 0.0073 16.6 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4959) NADHdh PF00146.21 gi|88603829|ref|YP_504007.1| - 6.4e-64 216.1 23.6 7.5e-64 215.9 23.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|88603830|ref|YP_504008.1| - 1.6e-10 40.3 15.0 1.5e-07 31.0 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88603830|ref|YP_504008.1| - 2.6e-10 40.2 9.7 3.7e-10 39.8 9.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88603830|ref|YP_504008.1| - 1e-08 35.2 13.0 1.6e-08 34.5 13.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88603830|ref|YP_504008.1| - 5.1e-08 33.0 13.7 7.5e-08 32.4 13.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88603830|ref|YP_504008.1| - 5.3e-08 33.3 14.4 8.6e-08 32.7 14.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88603830|ref|YP_504008.1| - 1e-07 31.7 3.5 1e-07 31.7 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88603830|ref|YP_504008.1| - 3.2e-07 31.2 9.9 0.00056 20.8 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|88603830|ref|YP_504008.1| - 6.9e-06 25.9 1.6 6.9e-06 25.9 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|88603830|ref|YP_504008.1| - 7.3e-05 23.1 6.1 0.031 14.7 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88603830|ref|YP_504008.1| - 0.0009 19.6 13.3 0.0016 18.8 3.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|88603830|ref|YP_504008.1| - 0.002 18.9 8.0 0.14 13.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|88603830|ref|YP_504008.1| - 0.0051 17.3 14.4 0.053 14.1 2.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88603830|ref|YP_504008.1| - 0.012 16.1 12.8 0.018 15.6 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|88603830|ref|YP_504008.1| - 0.017 16.1 20.5 0.24 12.4 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|88603830|ref|YP_504008.1| - 0.13 13.1 13.9 34 5.3 13.9 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|88603830|ref|YP_504008.1| - 0.17 12.1 13.5 0.54 10.5 12.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|88603830|ref|YP_504008.1| - 1.1 9.5 10.2 2.4 8.3 8.5 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NAPRTase_N PF17767.1 gi|88603831|ref|YP_504009.1| - 3.7e-39 133.9 0.0 7.8e-39 132.9 0.0 1.6 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase_C PF17956.1 gi|88603831|ref|YP_504009.1| - 4.8e-10 39.8 0.0 2.9e-06 27.7 0.0 2.4 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase PF04095.16 gi|88603831|ref|YP_504009.1| - 1.7e-08 34.4 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family Transglut_core PF01841.19 gi|88603832|ref|YP_504010.1| - 1.9e-22 79.8 0.1 3.1e-22 79.2 0.1 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily TraL PF07178.11 gi|88603832|ref|YP_504010.1| - 0.18 12.3 0.0 0.27 11.7 0.0 1.2 1 0 0 1 1 1 0 TraL protein SPOUT_MTase PF02590.17 gi|88603833|ref|YP_504011.1| - 6.6e-48 162.6 0.0 7.6e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase Lipase_GDSL_lke PF16255.5 gi|88603833|ref|YP_504011.1| - 0.18 11.2 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase CHASE4 PF05228.13 gi|88603834|ref|YP_504012.1| - 1.3e-34 119.4 0.1 2.7e-34 118.3 0.1 1.6 1 0 0 1 1 1 1 CHASE4 domain PAS_8 PF13188.7 gi|88603834|ref|YP_504012.1| - 1.1e-07 31.6 0.0 3.1e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88603834|ref|YP_504012.1| - 0.00028 20.9 0.0 0.0012 18.8 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88603834|ref|YP_504012.1| - 0.00077 19.7 0.1 0.003 17.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain CENP-H PF05837.12 gi|88603834|ref|YP_504012.1| - 0.38 11.2 2.4 0.41 11.1 0.5 1.9 2 0 0 2 2 2 0 Centromere protein H (CENP-H) ERM PF00769.19 gi|88603834|ref|YP_504012.1| - 0.73 9.6 5.8 0.19 11.5 1.9 1.8 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Snapin_Pallidin PF14712.6 gi|88603834|ref|YP_504012.1| - 1.8 9.0 5.3 2.1 8.8 0.4 2.4 2 0 0 2 2 2 0 Snapin/Pallidin AhpC-TSA PF00578.21 gi|88603835|ref|YP_504013.1| - 1.4e-37 128.4 0.0 1.6e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|88603835|ref|YP_504013.1| - 7.8e-16 58.1 0.0 9.4e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|88603835|ref|YP_504013.1| - 5.2e-06 26.4 0.0 7.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|88603835|ref|YP_504013.1| - 0.16 12.1 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme NRD1_2 PF01995.16 gi|88603837|ref|YP_504015.1| - 1.5e-85 286.2 0.0 1.7e-85 286.1 0.0 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 GPI PF06560.11 gi|88603838|ref|YP_504016.1| - 4.5e-38 130.3 0.0 5.4e-38 130.1 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_1 PF00190.22 gi|88603838|ref|YP_504016.1| - 0.0044 16.6 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|88603838|ref|YP_504016.1| - 0.0085 15.8 0.0 0.017 14.8 0.0 1.5 1 1 0 1 1 1 1 Cupin domain ARD PF03079.14 gi|88603838|ref|YP_504016.1| - 0.0096 16.1 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family NAD_synthase PF02540.17 gi|88603839|ref|YP_504017.1| - 1.6e-69 233.7 0.0 2e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|88603839|ref|YP_504017.1| - 0.00021 20.2 0.0 0.0031 16.3 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|88603839|ref|YP_504017.1| - 0.0039 16.9 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|88603839|ref|YP_504017.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|88603839|ref|YP_504017.1| - 0.041 13.4 0.3 5.8 6.3 0.3 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|88603839|ref|YP_504017.1| - 0.13 12.3 0.0 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family RIO1 PF01163.22 gi|88603841|ref|YP_504019.1| - 4.8e-41 140.4 0.0 7.1e-41 139.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|88603841|ref|YP_504019.1| - 1.6e-26 92.3 0.3 4.1e-26 91.0 0.2 1.7 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|88603841|ref|YP_504019.1| - 1.3e-06 28.6 0.1 0.00011 22.2 0.0 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family HTH_9 PF08221.11 gi|88603841|ref|YP_504019.1| - 0.0026 17.8 0.0 0.0073 16.4 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Pkinase PF00069.25 gi|88603841|ref|YP_504019.1| - 0.015 14.7 0.0 0.043 13.2 0.0 1.7 1 1 0 1 1 1 0 Protein kinase domain B-block_TFIIIC PF04182.12 gi|88603841|ref|YP_504019.1| - 0.02 15.0 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|88603841|ref|YP_504019.1| - 0.14 12.0 0.2 0.69 9.8 0.1 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|88603841|ref|YP_504019.1| - 0.22 11.1 0.5 1.4 8.6 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF460 PF04312.13 gi|88603842|ref|YP_504020.1| - 8.5e-50 168.1 0.0 2.7e-49 166.5 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|88603842|ref|YP_504020.1| - 2.9e-06 27.6 2.0 8.7e-05 22.8 0.9 2.8 1 1 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor TMCO5 PF14992.6 gi|88603842|ref|YP_504020.1| - 0.0038 16.9 6.2 0.0076 15.9 6.2 1.4 1 0 0 1 1 1 1 TMCO5 family SlyX PF04102.12 gi|88603842|ref|YP_504020.1| - 0.004 17.7 11.8 0.033 14.8 1.4 2.9 1 1 1 2 2 2 2 SlyX CENP-H PF05837.12 gi|88603842|ref|YP_504020.1| - 0.027 14.9 7.6 0.06 13.8 7.6 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Tropomyosin_1 PF12718.7 gi|88603842|ref|YP_504020.1| - 0.049 13.8 8.8 0.71 10.0 4.6 2.4 1 1 1 2 2 2 0 Tropomyosin like KLRAQ PF10205.9 gi|88603842|ref|YP_504020.1| - 0.13 12.5 6.2 0.37 11.1 6.2 1.8 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein BRE1 PF08647.11 gi|88603842|ref|YP_504020.1| - 0.2 11.7 9.7 0.22 11.6 7.9 2.0 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase APG6_N PF17675.1 gi|88603842|ref|YP_504020.1| - 0.58 10.7 9.7 6.4 7.3 1.8 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region Atg14 PF10186.9 gi|88603842|ref|YP_504020.1| - 1.5 7.8 8.3 2.4 7.2 8.3 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 AIRS PF00586.24 gi|88603843|ref|YP_504021.1| - 7.3e-20 71.4 2.0 1.7e-19 70.2 2.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|88603843|ref|YP_504021.1| - 1.3e-05 25.3 0.6 5.7e-05 23.3 0.6 2.1 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain TPR_2 PF07719.17 gi|88603844|ref|YP_504022.1| - 6.5e-65 210.1 30.9 1.7e-06 27.7 0.0 15.6 16 0 0 16 16 15 11 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603844|ref|YP_504022.1| - 2e-58 192.0 37.2 9.4e-08 31.6 0.0 15.3 16 0 0 16 16 15 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603844|ref|YP_504022.1| - 1.2e-53 178.6 44.8 2.1e-06 27.3 0.1 16.1 7 4 9 16 16 16 13 TPR repeat TPR_16 PF13432.6 gi|88603844|ref|YP_504022.1| - 1.5e-52 176.0 28.2 2.5e-08 34.4 0.4 10.2 7 3 3 10 10 10 9 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603844|ref|YP_504022.1| - 1.9e-41 140.4 29.6 5.7e-08 33.1 0.8 9.4 6 2 5 11 11 11 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603844|ref|YP_504022.1| - 4.4e-40 133.2 38.1 0.0068 16.7 0.0 15.6 15 1 0 15 15 15 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603844|ref|YP_504022.1| - 3.2e-39 130.2 23.7 0.00061 20.4 1.3 14.7 3 2 12 15 15 15 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603844|ref|YP_504022.1| - 5e-38 126.1 33.5 0.00015 21.7 0.0 14.6 17 0 0 17 17 15 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603844|ref|YP_504022.1| - 3.9e-29 100.8 28.1 0.00046 20.4 0.0 10.7 6 4 3 9 9 9 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603844|ref|YP_504022.1| - 2e-27 95.1 6.9 7.7e-06 26.0 0.0 8.7 4 4 4 8 8 8 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603844|ref|YP_504022.1| - 7.3e-17 61.4 13.1 0.0084 16.3 0.0 7.6 3 3 5 8 8 8 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88603844|ref|YP_504022.1| - 1.3e-11 44.3 31.1 0.12 13.1 0.0 12.2 14 0 0 14 14 12 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603844|ref|YP_504022.1| - 6.2e-11 42.0 18.3 0.0024 17.1 0.9 5.4 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88603844|ref|YP_504022.1| - 3.1e-09 37.0 13.7 3.2 8.2 0.0 8.7 5 2 3 9 9 9 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88603844|ref|YP_504022.1| - 6.4e-07 28.7 9.1 0.00041 19.4 0.1 4.8 4 1 1 5 5 5 2 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|88603844|ref|YP_504022.1| - 8e-07 28.9 14.4 1.1 9.3 0.0 8.2 9 0 0 9 9 7 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603844|ref|YP_504022.1| - 1e-06 28.3 16.9 0.38 10.9 0.1 10.1 12 0 0 12 12 11 1 Tetratricopeptide repeat ChAPs PF09295.10 gi|88603844|ref|YP_504022.1| - 2.2e-05 23.7 4.1 0.11 11.4 0.3 3.5 2 1 1 3 3 3 2 ChAPs (Chs5p-Arf1p-binding proteins) BTAD PF03704.17 gi|88603844|ref|YP_504022.1| - 7.8e-05 23.1 14.5 0.046 14.1 2.4 5.6 3 3 5 8 8 8 3 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|88603844|ref|YP_504022.1| - 0.00014 21.6 25.2 4.8 7.2 0.3 10.2 11 0 0 11 11 10 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88603844|ref|YP_504022.1| - 0.00066 19.2 1.4 0.078 12.4 0.1 3.3 1 1 2 3 3 3 1 Coatomer epsilon subunit Fis1_TPR_C PF14853.6 gi|88603844|ref|YP_504022.1| - 0.0028 17.7 9.9 19 5.4 0.0 7.0 6 1 1 7 7 7 0 Fis1 C-terminal tetratricopeptide repeat TPR_4 PF07721.14 gi|88603844|ref|YP_504022.1| - 0.013 16.1 21.1 4.4 8.2 0.0 7.5 9 0 0 9 9 6 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|88603844|ref|YP_504022.1| - 0.014 14.8 3.9 0.82 9.2 0.2 4.6 5 0 0 5 5 4 0 SHNi-TPR RPN7 PF10602.9 gi|88603844|ref|YP_504022.1| - 0.25 11.0 3.0 1.2 8.8 0.0 3.4 4 0 0 4 4 4 0 26S proteasome subunit RPN7 Alkyl_sulf_dimr PF14863.6 gi|88603844|ref|YP_504022.1| - 0.59 10.6 6.1 16 5.9 0.2 4.4 4 2 0 4 4 3 0 Alkyl sulfatase dimerisation PknG_TPR PF16918.5 gi|88603844|ref|YP_504022.1| - 0.6 8.8 6.4 0.7 8.6 0.7 3.1 2 2 2 4 4 4 0 Protein kinase G tetratricopeptide repeat PKD PF00801.20 gi|88603845|ref|YP_504023.1| - 2.3e-09 37.0 0.2 3.9e-09 36.2 0.2 1.4 1 0 0 1 1 1 1 PKD domain PPDK_N PF01326.19 gi|88603848|ref|YP_504026.1| - 4.3e-103 345.0 0.0 6.7e-103 344.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|88603848|ref|YP_504026.1| - 2.8e-82 276.1 0.0 4.1e-82 275.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|88603848|ref|YP_504026.1| - 7.8e-27 92.8 2.4 7.8e-27 92.8 2.4 2.6 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain Pyridoxal_deC PF00282.19 gi|88603849|ref|YP_504027.1| - 1.7e-29 102.7 0.0 3.9e-29 101.5 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|88603849|ref|YP_504027.1| - 2.5e-10 39.9 0.0 1.1e-09 37.8 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|88603849|ref|YP_504027.1| - 4e-08 32.8 0.0 1.5e-07 30.9 0.0 1.9 2 1 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|88603849|ref|YP_504027.1| - 0.0018 17.7 0.0 0.0027 17.1 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pribosyltran PF00156.27 gi|88603850|ref|YP_504028.1| - 2.8e-13 49.7 0.2 3.3e-13 49.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|88603850|ref|YP_504028.1| - 0.0032 17.0 0.1 0.0051 16.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|88603850|ref|YP_504028.1| - 0.0037 16.7 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Diphthamide_syn PF01866.17 gi|88603851|ref|YP_504029.1| - 6.4e-72 242.6 0.0 7.6e-72 242.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.14 gi|88603852|ref|YP_504030.1| - 8.4e-15 54.7 0.1 1.1e-14 54.3 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|88603852|ref|YP_504030.1| - 1.9e-10 40.6 0.8 2.3e-10 40.4 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|88603852|ref|YP_504030.1| - 9e-09 35.9 0.1 1.5e-08 35.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|88603852|ref|YP_504030.1| - 9.5e-09 35.2 1.0 1e-07 31.8 1.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|88603852|ref|YP_504030.1| - 1.2e-08 34.9 0.1 1.7e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|88603852|ref|YP_504030.1| - 1e-07 31.8 0.0 1.3e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|88603852|ref|YP_504030.1| - 6.1e-06 26.2 0.0 7.1e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88603852|ref|YP_504030.1| - 2.4e-05 24.9 0.0 4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|88603852|ref|YP_504030.1| - 4e-05 23.2 0.0 4.8e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|88603852|ref|YP_504030.1| - 0.0094 15.7 0.0 0.017 14.8 0.0 1.4 2 0 0 2 2 2 1 DNA methylase Methyltransf_16 PF10294.9 gi|88603852|ref|YP_504030.1| - 0.013 15.2 0.1 0.019 14.7 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_32 PF13679.6 gi|88603852|ref|YP_504030.1| - 0.014 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|88603852|ref|YP_504030.1| - 0.031 13.5 0.0 0.04 13.2 0.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain TehB PF03848.14 gi|88603852|ref|YP_504030.1| - 0.034 13.6 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB N6_Mtase PF02384.16 gi|88603852|ref|YP_504030.1| - 0.047 13.0 0.0 0.24 10.6 0.0 1.9 1 1 0 1 1 1 0 N-6 DNA Methylase PCMT PF01135.19 gi|88603852|ref|YP_504030.1| - 0.049 13.4 0.0 0.064 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.11 gi|88603852|ref|YP_504030.1| - 0.059 12.9 0.1 0.084 12.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MtrC PF04211.13 gi|88603852|ref|YP_504030.1| - 0.067 12.2 0.3 0.1 11.7 0.3 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C Methyltransf_12 PF08242.12 gi|88603852|ref|YP_504030.1| - 0.12 13.1 0.0 0.18 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF371 PF04027.13 gi|88603853|ref|YP_504031.1| - 1e-46 158.2 0.0 1.1e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF2387 PF09526.10 gi|88603854|ref|YP_504032.1| - 0.029 14.5 0.1 0.06 13.5 0.1 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.10 gi|88603854|ref|YP_504032.1| - 0.094 12.9 0.6 0.21 11.7 0.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain CBS PF00571.28 gi|88603856|ref|YP_504034.1| - 5.2e-19 68.4 7.0 7e-11 42.4 0.8 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|88603856|ref|YP_504034.1| - 9.2e-11 41.9 5.9 2e-10 40.8 1.4 2.9 2 1 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|88603856|ref|YP_504034.1| - 0.0048 17.0 0.0 0.028 14.5 0.0 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease Exo70 PF03081.15 gi|88603856|ref|YP_504034.1| - 0.025 13.6 0.1 0.66 9.0 0.0 2.0 2 0 0 2 2 2 0 Exo70 exocyst complex subunit NTP_transferase PF00483.23 gi|88603857|ref|YP_504035.1| - 6.6e-44 150.3 0.0 8.2e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|88603857|ref|YP_504035.1| - 1.2e-12 47.0 21.4 2.1e-06 27.2 1.7 5.2 2 1 5 7 7 7 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|88603857|ref|YP_504035.1| - 2.1e-08 34.7 0.0 3e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|88603857|ref|YP_504035.1| - 0.0025 17.5 5.0 0.0025 17.5 5.0 3.7 3 2 2 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|88603857|ref|YP_504035.1| - 0.005 15.0 2.4 0.0072 14.5 2.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Peripla_BP_6 PF13458.6 gi|88603857|ref|YP_504035.1| - 0.06 13.0 0.0 0.097 12.3 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Fucokinase PF07959.12 gi|88603857|ref|YP_504035.1| - 0.14 11.1 0.7 0.51 9.2 0.7 2.0 1 1 0 1 1 1 0 L-fucokinase Bactofilin PF04519.13 gi|88603857|ref|YP_504035.1| - 0.17 12.2 3.4 0.38 11.1 1.7 2.2 1 1 1 2 2 2 0 Polymer-forming cytoskeletal MMR_HSR1_C PF08438.10 gi|88603859|ref|YP_504037.1| - 9.4e-27 93.8 0.0 1.6e-26 93.1 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|88603859|ref|YP_504037.1| - 9.1e-20 70.9 0.0 2.7e-19 69.3 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|88603859|ref|YP_504037.1| - 2e-12 47.0 0.0 4e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|88603859|ref|YP_504037.1| - 2.1e-08 33.8 0.0 1.8e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|88603859|ref|YP_504037.1| - 0.021 15.0 0.1 0.36 11.1 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF933) AAA_22 PF13401.6 gi|88603859|ref|YP_504037.1| - 0.05 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain PK_C PF02887.16 gi|88603860|ref|YP_504038.1| - 8.7e-13 48.5 0.4 1.5e-12 47.8 0.4 1.3 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.24 gi|88603860|ref|YP_504038.1| - 0.14 11.6 0.1 0.76 9.2 0.1 1.9 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel SP_C-Propep PF08999.10 gi|88603861|ref|YP_504039.1| - 0.37 10.6 6.6 0.35 10.7 0.1 2.4 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide DUF92 PF01940.16 gi|88603862|ref|YP_504040.1| - 2.1e-54 184.4 12.2 2.1e-54 184.4 12.2 2.7 2 1 1 3 3 3 2 Integral membrane protein DUF92 WTF PF03303.13 gi|88603862|ref|YP_504040.1| - 5.1 6.8 8.8 2.3 7.9 6.1 1.6 1 1 0 1 1 1 0 WTF protein TPR_2 PF07719.17 gi|88603863|ref|YP_504041.1| - 1.5e-18 65.3 1.6 0.00063 19.7 0.1 5.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603863|ref|YP_504041.1| - 5.8e-15 55.4 8.4 0.00024 21.3 0.0 4.6 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603863|ref|YP_504041.1| - 1.6e-13 50.9 7.3 1.1e-05 25.9 0.1 3.7 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603863|ref|YP_504041.1| - 1.7e-12 47.1 2.3 0.00089 19.9 0.0 4.9 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603863|ref|YP_504041.1| - 2.1e-12 46.2 10.3 0.0065 16.6 0.1 5.9 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603863|ref|YP_504041.1| - 3e-10 39.5 3.8 0.039 13.8 0.1 5.7 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603863|ref|YP_504041.1| - 4.4e-10 39.2 0.9 0.24 11.9 0.1 4.9 5 0 0 5 5 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603863|ref|YP_504041.1| - 3.1e-09 36.9 0.9 0.0009 19.4 0.0 3.1 1 1 4 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|88603863|ref|YP_504041.1| - 3.3e-09 37.3 7.2 0.0014 19.2 0.5 3.8 1 1 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603863|ref|YP_504041.1| - 1e-08 34.7 3.4 0.057 13.1 0.0 4.8 3 1 2 5 5 4 2 TPR repeat TPR_10 PF13374.6 gi|88603863|ref|YP_504041.1| - 1.4e-07 31.1 7.3 0.37 10.7 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603863|ref|YP_504041.1| - 1.5e-06 28.2 0.4 0.011 15.8 0.1 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603863|ref|YP_504041.1| - 2.6e-06 26.9 3.4 4.5e-06 26.1 3.4 1.4 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603863|ref|YP_504041.1| - 7.6e-06 25.6 0.7 0.48 10.6 0.0 4.7 5 1 1 6 6 5 2 Tetratricopeptide repeat BTAD PF03704.17 gi|88603863|ref|YP_504041.1| - 0.0011 19.5 0.2 0.12 12.8 0.0 2.5 1 1 1 2 2 2 1 Bacterial transcriptional activator domain Mad3_BUB1_I PF08311.12 gi|88603863|ref|YP_504041.1| - 0.0042 17.1 1.4 7.5 6.6 0.1 4.3 4 1 0 4 4 4 1 Mad3/BUB1 homology region 1 Wzy_C_2 PF11846.8 gi|88603863|ref|YP_504041.1| - 0.012 15.6 4.2 12 5.7 0.0 4.3 4 1 1 5 5 5 0 Virulence factor membrane-bound polymerase, C-terminal TPR_MalT PF17874.1 gi|88603863|ref|YP_504041.1| - 0.015 14.7 0.2 1.8 7.9 0.0 3.1 1 1 3 4 4 4 0 MalT-like TPR region TPR_21 PF09976.9 gi|88603863|ref|YP_504041.1| - 0.023 14.4 6.2 0.5 10.1 0.0 3.8 1 1 3 4 4 4 0 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|88603863|ref|YP_504041.1| - 0.028 13.3 0.6 0.33 9.8 0.2 2.4 1 1 2 3 3 3 0 NMDA receptor-regulated protein 1 SNAP PF14938.6 gi|88603863|ref|YP_504041.1| - 0.045 13.2 1.6 1.7 8.0 0.3 2.5 2 1 0 2 2 2 0 Soluble NSF attachment protein, SNAP RPN7 PF10602.9 gi|88603863|ref|YP_504041.1| - 0.21 11.3 1.0 21 4.7 0.0 3.5 3 1 1 4 4 4 0 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|88603863|ref|YP_504041.1| - 6 7.7 11.2 18 6.3 0.0 5.1 7 0 0 7 7 4 0 Tetratricopeptide repeat tRNA-synt_1 PF00133.22 gi|88603864|ref|YP_504042.1| - 3.7e-130 435.0 0.2 5.6e-129 431.1 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|88603864|ref|YP_504042.1| - 8.9e-35 119.9 0.0 1.6e-34 119.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|88603864|ref|YP_504042.1| - 1.5e-22 79.9 0.1 2.8e-11 42.8 0.0 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|88603864|ref|YP_504042.1| - 2.2e-05 24.0 0.0 0.094 12.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|88603864|ref|YP_504042.1| - 4.8e-05 23.0 0.0 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|88603864|ref|YP_504042.1| - 0.0058 16.6 3.1 0.48 10.5 0.2 3.3 3 0 0 3 3 3 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|88603864|ref|YP_504042.1| - 0.056 13.6 2.9 0.26 11.4 0.6 2.8 2 0 0 2 2 2 0 Zinc ribbon domain tRNA-synt_1f PF01921.18 gi|88603864|ref|YP_504042.1| - 0.067 12.1 0.0 0.22 10.4 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf_UBZ PF18439.1 gi|88603864|ref|YP_504042.1| - 1.2 8.8 9.7 15 5.3 0.2 4.3 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|88603864|ref|YP_504042.1| - 3.3 7.3 4.7 14 5.3 0.3 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|88603864|ref|YP_504042.1| - 4.3 7.3 5.7 6.1 6.8 0.0 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|88603864|ref|YP_504042.1| - 4.7 6.8 10.8 3.7 7.1 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain AAA_15 PF13175.6 gi|88603865|ref|YP_504043.1| - 3.7e-23 82.8 0.3 1.3e-14 54.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|88603865|ref|YP_504043.1| - 6.2e-23 82.1 1.3 4.2e-15 56.3 0.2 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88603865|ref|YP_504043.1| - 1.3e-10 41.1 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88603865|ref|YP_504043.1| - 1.3e-09 38.8 0.2 2.1e-09 38.2 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|88603865|ref|YP_504043.1| - 0.00025 20.7 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|88603865|ref|YP_504043.1| - 0.00031 20.4 0.1 0.00071 19.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|88603865|ref|YP_504043.1| - 0.004 17.7 0.0 0.12 12.9 0.0 2.3 2 0 0 2 2 2 1 ABC transporter MMR_HSR1 PF01926.23 gi|88603865|ref|YP_504043.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Thymidylate_kin PF02223.17 gi|88603867|ref|YP_504045.1| - 3.2e-39 134.5 0.0 4.1e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|88603867|ref|YP_504045.1| - 1.1e-05 25.4 0.0 2.8e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|88603867|ref|YP_504045.1| - 5.9e-05 23.4 0.0 7.9e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|88603867|ref|YP_504045.1| - 0.0023 18.4 0.0 0.017 15.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 gi|88603867|ref|YP_504045.1| - 0.073 12.6 0.0 0.43 10.1 0.0 1.9 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 His_biosynth PF00977.21 gi|88603868|ref|YP_504046.1| - 1.3e-20 73.8 0.0 2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|88603868|ref|YP_504046.1| - 0.011 15.1 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PRAI PF00697.22 gi|88603868|ref|YP_504046.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4HFCP_synth PF04476.13 gi|88603869|ref|YP_504047.1| - 3e-78 262.7 0.2 3.4e-78 262.5 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase IMPDH PF00478.25 gi|88603870|ref|YP_504048.1| - 1.4e-149 497.8 10.7 1.6e-149 497.6 10.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|88603870|ref|YP_504048.1| - 1.2e-24 86.5 6.8 1.5e-11 44.6 0.2 2.9 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 gi|88603870|ref|YP_504048.1| - 7.1e-10 38.8 12.4 2.3e-07 30.5 2.9 3.4 1 1 3 4 4 4 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|88603870|ref|YP_504048.1| - 2.6e-06 27.1 3.5 5.4e-06 26.0 3.5 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|88603870|ref|YP_504048.1| - 7.6e-06 25.2 21.2 2.2e-05 23.6 17.9 2.9 3 1 0 3 3 3 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|88603870|ref|YP_504048.1| - 1.5e-05 24.3 8.8 2.6e-05 23.5 8.6 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|88603870|ref|YP_504048.1| - 0.00096 18.5 1.9 0.00096 18.5 1.9 2.6 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|88603870|ref|YP_504048.1| - 0.0049 16.1 1.5 0.0099 15.1 1.5 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|88603870|ref|YP_504048.1| - 0.017 14.5 4.1 0.031 13.7 0.3 2.7 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 gi|88603870|ref|YP_504048.1| - 0.021 13.9 2.4 0.038 13.1 0.1 2.3 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) DUF561 PF04481.12 gi|88603870|ref|YP_504048.1| - 0.11 11.7 1.3 0.81 8.8 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF561) HTH_5 PF01022.20 gi|88603871|ref|YP_504049.1| - 1.5e-14 53.6 0.1 1.6e-10 40.6 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|88603871|ref|YP_504049.1| - 7.7e-11 41.9 3.0 8.8e-08 32.1 0.2 2.5 3 0 0 3 3 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|88603871|ref|YP_504049.1| - 1.4e-06 28.1 0.0 0.0024 17.7 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88603871|ref|YP_504049.1| - 2.9e-06 27.1 1.1 0.0044 16.9 0.2 2.5 2 1 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|88603871|ref|YP_504049.1| - 5.5e-06 25.9 4.4 0.0025 17.3 0.6 4.2 4 1 0 4 4 4 1 Winged helix-turn-helix DNA-binding CHASE3 PF05227.13 gi|88603871|ref|YP_504049.1| - 0.00024 21.0 1.4 0.00041 20.3 1.4 1.3 1 0 0 1 1 1 1 CHASE3 domain Rrf2 PF02082.20 gi|88603871|ref|YP_504049.1| - 0.00036 20.8 0.0 0.91 9.9 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HxlR PF01638.17 gi|88603871|ref|YP_504049.1| - 0.0012 18.6 0.3 2 8.3 0.0 2.7 3 0 0 3 3 3 2 HxlR-like helix-turn-helix TFIIE_alpha PF02002.17 gi|88603871|ref|YP_504049.1| - 0.0012 18.7 2.5 0.89 9.4 0.0 3.1 3 0 0 3 3 3 2 TFIIE alpha subunit HTH_47 PF16221.5 gi|88603871|ref|YP_504049.1| - 0.0097 15.5 0.1 0.14 11.7 0.0 2.3 2 0 0 2 2 2 1 winged helix-turn-helix DprA_WH PF17782.1 gi|88603871|ref|YP_504049.1| - 0.015 15.4 2.0 0.41 10.8 0.1 2.8 3 0 0 3 3 3 0 DprA winged helix domain HTH_11 PF08279.12 gi|88603871|ref|YP_504049.1| - 0.023 14.6 1.0 0.055 13.4 0.0 2.2 2 0 0 2 2 2 0 HTH domain FlgN PF05130.12 gi|88603871|ref|YP_504049.1| - 0.034 14.7 1.2 0.034 14.7 1.2 1.6 2 0 0 2 2 2 0 FlgN protein HTH_IclR PF09339.10 gi|88603871|ref|YP_504049.1| - 0.034 13.9 1.9 7.6 6.4 0.0 3.0 3 1 0 3 3 3 0 IclR helix-turn-helix domain RepL PF05732.11 gi|88603871|ref|YP_504049.1| - 0.04 13.3 0.2 5.1 6.5 0.0 2.6 3 0 0 3 3 3 0 Firmicute plasmid replication protein (RepL) MarR PF01047.22 gi|88603871|ref|YP_504049.1| - 0.044 13.7 2.1 2.8 8.0 0.1 3.1 3 1 0 3 3 3 0 MarR family TetR_C_24 PF17932.1 gi|88603871|ref|YP_504049.1| - 0.055 13.7 1.1 0.27 11.5 0.8 2.2 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain RP-C PF03428.13 gi|88603871|ref|YP_504049.1| - 0.087 12.5 1.3 10 5.7 0.0 2.7 2 1 0 2 2 2 0 Replication protein C N-terminal domain NuA4 PF09340.10 gi|88603871|ref|YP_504049.1| - 0.17 11.7 0.5 0.31 10.9 0.5 1.4 1 0 0 1 1 1 0 Histone acetyltransferase subunit NuA4 TetR_C_31 PF17940.1 gi|88603871|ref|YP_504049.1| - 1.3 9.2 5.1 0.27 11.4 1.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CS PF04969.16 gi|88603872|ref|YP_504050.1| - 0.065 14.3 0.0 0.096 13.7 0.0 1.3 1 0 0 1 1 1 0 CS domain Pyr_redox_2 PF07992.14 gi|88603873|ref|YP_504051.1| - 4.4e-41 141.0 0.1 5.7e-41 140.7 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|88603873|ref|YP_504051.1| - 1.2e-11 44.4 0.0 1.9e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|88603873|ref|YP_504051.1| - 1.5e-11 44.7 0.5 1.5e-10 41.5 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|88603873|ref|YP_504051.1| - 0.00058 19.1 1.6 0.14 11.2 0.1 2.7 2 1 1 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|88603873|ref|YP_504051.1| - 0.0037 17.7 0.1 0.0098 16.3 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|88603873|ref|YP_504051.1| - 0.016 15.4 0.5 0.64 10.3 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|88603873|ref|YP_504051.1| - 0.025 13.7 0.1 0.12 11.5 0.0 1.8 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|88603873|ref|YP_504051.1| - 0.037 13.9 0.1 0.066 13.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|88603873|ref|YP_504051.1| - 0.047 13.1 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|88603873|ref|YP_504051.1| - 0.11 12.0 4.7 16 4.9 0.1 3.6 3 1 1 4 4 4 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|88603873|ref|YP_504051.1| - 0.38 9.8 0.0 0.38 9.8 0.0 2.5 2 1 2 4 4 4 0 Glucose inhibited division protein A PAS_4 PF08448.10 gi|88603874|ref|YP_504052.1| - 2.4e-30 105.0 0.0 5e-14 52.5 0.0 3.8 4 0 0 4 4 4 3 PAS fold HisKA_2 PF07568.12 gi|88603874|ref|YP_504052.1| - 8.2e-25 86.7 4.4 8.2e-25 86.7 4.4 2.7 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.7 gi|88603874|ref|YP_504052.1| - 9.5e-23 80.4 1.0 2.5e-08 34.1 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|88603874|ref|YP_504052.1| - 1.5e-21 76.5 0.0 1.1e-10 41.4 0.0 3.9 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|88603874|ref|YP_504052.1| - 1e-20 73.8 0.0 3.3e-13 49.7 0.0 3.6 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|88603874|ref|YP_504052.1| - 1.3e-14 54.3 0.1 2.6e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|88603874|ref|YP_504052.1| - 7.3e-10 38.6 0.0 1.8e-05 24.6 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.6 gi|88603874|ref|YP_504052.1| - 1.2e-06 28.6 0.0 0.032 14.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain HWE_HK PF07536.14 gi|88603874|ref|YP_504052.1| - 4.8e-06 27.2 0.3 4.2e-05 24.2 0.2 2.6 2 0 0 2 2 2 1 HWE histidine kinase GAF_2 PF13185.6 gi|88603874|ref|YP_504052.1| - 0.00011 22.5 0.0 0.64 10.3 0.0 2.7 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|88603874|ref|YP_504052.1| - 0.00012 22.6 1.1 0.00029 21.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88603874|ref|YP_504052.1| - 0.065 13.2 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 gi|88603875|ref|YP_504053.1| - 4.8e-26 91.1 0.8 1.2e-25 89.8 0.4 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88603875|ref|YP_504053.1| - 5.4e-09 36.3 0.0 0.0019 18.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88603875|ref|YP_504053.1| - 1.7e-06 28.2 0.0 0.0032 17.7 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88603875|ref|YP_504053.1| - 4.9e-06 26.5 0.0 0.00014 21.9 0.0 2.7 2 1 0 2 2 2 1 PAS fold ArsD PF06953.11 gi|88603875|ref|YP_504053.1| - 0.043 14.2 0.0 0.22 11.9 0.0 2.1 2 1 1 3 3 3 0 Arsenical resistance operon trans-acting repressor ArsD PAS_8 PF13188.7 gi|88603875|ref|YP_504053.1| - 0.045 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 PAS domain DUF5343 PF17278.2 gi|88603875|ref|YP_504053.1| - 0.073 13.2 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5343) Response_reg PF00072.24 gi|88603876|ref|YP_504054.1| - 6.7e-18 64.9 0.6 1.3e-17 64.0 0.6 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Ribosomal_L18_c PF14204.6 gi|88603876|ref|YP_504054.1| - 0.1 13.6 0.2 2.5 9.1 0.0 2.7 3 0 0 3 3 3 0 Ribosomal L18 C-terminal region B12-binding PF02310.19 gi|88603877|ref|YP_504055.1| - 6.8e-17 61.6 0.0 1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|88603877|ref|YP_504055.1| - 9.8e-07 29.1 0.0 1.5e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain E3_UbLigase_EDD PF11547.8 gi|88603877|ref|YP_504055.1| - 0.11 12.2 0.0 0.35 10.6 0.0 1.9 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD HATPase_c PF02518.26 gi|88603878|ref|YP_504056.1| - 6.4e-20 71.7 0.7 1.2e-19 70.9 0.7 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88603878|ref|YP_504056.1| - 1.3e-14 54.0 0.2 3.2e-14 52.7 0.2 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|88603878|ref|YP_504056.1| - 0.0033 17.3 0.0 0.008 16.0 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|88603878|ref|YP_504056.1| - 0.0039 17.1 0.1 0.0096 15.8 0.1 1.7 1 1 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|88603878|ref|YP_504056.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF758 PF05527.11 gi|88603878|ref|YP_504056.1| - 0.0095 15.9 0.1 0.023 14.7 0.1 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF758) MASE3 PF17159.4 gi|88603880|ref|YP_504058.1| - 2.9e-55 187.4 13.9 3.9e-55 186.9 13.9 1.2 1 0 0 1 1 1 1 Membrane-associated sensor domain HATPase_c PF02518.26 gi|88603880|ref|YP_504058.1| - 5.2e-10 39.8 0.0 1e-09 38.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|88603880|ref|YP_504058.1| - 4.8e-08 33.2 0.0 7.4e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|88603880|ref|YP_504058.1| - 8.6e-06 25.7 0.0 3.6e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|88603880|ref|YP_504058.1| - 0.0084 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|88603880|ref|YP_504058.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|88603880|ref|YP_504058.1| - 0.15 12.0 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.6 gi|88603880|ref|YP_504058.1| - 0.19 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DDE_Tnp_1_6 PF13751.6 gi|88603881|ref|YP_504059.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88603881|ref|YP_504059.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88603881|ref|YP_504059.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88603881|ref|YP_504059.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain MASE3 PF17159.4 gi|88603882|ref|YP_504060.1| - 2.7e-17 63.1 5.9 2.7e-17 63.1 5.9 1.6 1 1 0 1 1 1 1 Membrane-associated sensor domain 7TMR-DISM_7TM PF07695.11 gi|88603882|ref|YP_504060.1| - 0.012 15.5 9.5 0.013 15.4 9.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling MerC PF03203.14 gi|88603882|ref|YP_504060.1| - 0.091 13.2 2.9 0.19 12.2 3.0 1.5 1 1 0 1 1 1 0 MerC mercury resistance protein Response_reg PF00072.24 gi|88603883|ref|YP_504061.1| - 2.1e-23 82.6 0.2 3.9e-23 81.7 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|88603883|ref|YP_504061.1| - 1.5e-08 34.8 0.0 3e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|88603883|ref|YP_504061.1| - 1.7e-06 27.9 0.0 4.3e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88603883|ref|YP_504061.1| - 1.9e-06 28.1 0.0 3.1e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|88603883|ref|YP_504061.1| - 6.1e-06 26.2 0.0 2.4e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.15 gi|88603883|ref|YP_504061.1| - 0.028 14.7 0.1 0.1 12.9 0.1 1.9 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|88603883|ref|YP_504061.1| - 0.034 14.3 0.0 0.084 13.0 0.0 1.8 1 0 0 1 1 1 0 PAS fold RVT_1 PF00078.27 gi|88603884|ref|YP_504062.1| - 1.2e-41 142.7 0.0 2.3e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88603884|ref|YP_504062.1| - 1.3e-29 102.3 1.2 2.7e-29 101.2 1.2 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88603884|ref|YP_504062.1| - 5.1e-24 84.1 9.5 1.6e-23 82.6 9.5 1.9 1 0 0 1 1 1 1 Group II intron, maturase-specific domain HicB_lk_antitox PF15919.5 gi|88603886|ref|YP_504064.1| - 6.1e-09 36.1 0.0 7.2e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|88603887|ref|YP_504065.1| - 2.9e-16 59.2 0.1 3.5e-16 59.0 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, PRO8NT PF08082.11 gi|88603887|ref|YP_504065.1| - 0.11 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain DUF1667 PF07892.11 gi|88603887|ref|YP_504065.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) HTH_29 PF13551.6 gi|88603889|ref|YP_504067.1| - 0.00096 19.1 0.0 0.0027 17.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|88603889|ref|YP_504067.1| - 0.0021 17.8 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TrwB_AAD_bind PF10412.9 gi|88603889|ref|YP_504067.1| - 0.029 13.3 0.0 0.064 12.1 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|88603889|ref|YP_504067.1| - 0.2 10.5 0.0 0.42 9.5 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain YacG PF03884.14 gi|88603890|ref|YP_504068.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG TPR_2 PF07719.17 gi|88603891|ref|YP_504069.1| - 2.7e-11 42.7 0.8 8.3e-05 22.4 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88603891|ref|YP_504069.1| - 8.2e-11 41.2 0.9 6.3e-05 22.6 0.2 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603891|ref|YP_504069.1| - 4.5e-07 30.4 0.0 1.2e-06 29.0 0.0 1.7 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603891|ref|YP_504069.1| - 1.4e-06 28.6 0.0 0.011 16.5 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603891|ref|YP_504069.1| - 1.9e-06 27.8 0.4 0.03 14.4 0.2 2.2 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_11 PF13414.6 gi|88603891|ref|YP_504069.1| - 5.8e-05 22.7 0.4 0.062 13.0 0.1 3.0 2 1 1 3 3 3 2 TPR repeat TPR_8 PF13181.6 gi|88603891|ref|YP_504069.1| - 6.3e-05 22.9 0.3 0.27 11.5 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603891|ref|YP_504069.1| - 7.4e-05 22.5 0.1 0.46 10.6 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603891|ref|YP_504069.1| - 0.0001 22.7 0.0 0.00018 21.9 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603891|ref|YP_504069.1| - 0.00025 21.2 1.3 0.85 10.1 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603891|ref|YP_504069.1| - 0.00037 20.7 0.1 0.00062 19.9 0.1 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|88603891|ref|YP_504069.1| - 0.00055 20.2 0.1 0.32 11.3 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88603891|ref|YP_504069.1| - 0.0008 19.5 0.0 0.044 13.9 0.0 2.3 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603891|ref|YP_504069.1| - 0.0033 17.9 0.1 0.15 12.7 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat VAPB_antitox PF02697.14 gi|88603892|ref|YP_504070.1| - 0.00011 22.9 0.6 0.00013 22.6 0.6 1.2 1 0 0 1 1 1 1 Putative antitoxin MatP_C PF17414.2 gi|88603892|ref|YP_504070.1| - 0.027 14.7 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain Isochorismatase PF00857.20 gi|88603894|ref|YP_504072.1| - 7.1e-08 32.8 0.0 0.0002 21.6 0.0 2.1 2 0 0 2 2 2 2 Isochorismatase family DUF711 PF05167.12 gi|88603895|ref|YP_504073.1| - 5.2e-182 605.3 7.8 6.4e-182 605.0 7.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) NSP10 PF09401.10 gi|88603895|ref|YP_504073.1| - 0.082 13.0 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 RNA synthesis protein NSP10 DUF4444 PF14563.6 gi|88603895|ref|YP_504073.1| - 0.12 12.1 0.2 10 5.9 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4444) ACT_6 PF13740.6 gi|162139855|ref|YP_504074.2| - 4.3e-11 42.6 0.1 5.2e-11 42.4 0.1 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|162139855|ref|YP_504074.2| - 1.2e-08 34.6 0.2 1.4e-08 34.3 0.2 1.3 1 0 0 1 1 1 1 ACT domain SwrA PF17423.2 gi|162139855|ref|YP_504074.2| - 8.4e-05 22.5 0.3 9.8e-05 22.3 0.3 1.0 1 0 0 1 1 1 1 Swarming motility protein ACT_7 PF13840.6 gi|162139855|ref|YP_504074.2| - 0.0001 22.0 0.3 0.00015 21.5 0.3 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|162139855|ref|YP_504074.2| - 0.00048 20.7 0.8 0.00076 20.0 0.8 1.3 1 0 0 1 1 1 1 ACT domain ANF_receptor PF01094.28 gi|88603897|ref|YP_504075.1| - 3.3e-47 161.3 0.1 5.4e-23 81.7 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|88603897|ref|YP_504075.1| - 8.4e-45 153.9 0.3 1.4e-23 84.1 0.7 2.2 2 0 0 2 2 2 2 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|88603897|ref|YP_504075.1| - 3.3e-05 23.1 0.2 0.21 10.6 0.1 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain PrpR_N PF06506.11 gi|88603897|ref|YP_504075.1| - 8.7e-05 22.1 1.2 0.077 12.6 0.0 3.5 2 1 0 3 3 3 1 Propionate catabolism activator Peripla_BP_4 PF13407.6 gi|88603897|ref|YP_504075.1| - 0.00044 19.9 0.5 1.5 8.4 0.1 3.4 2 1 0 3 3 3 2 Periplasmic binding protein domain CoA_binding_2 PF13380.6 gi|88603897|ref|YP_504075.1| - 0.0052 17.3 0.1 11 6.6 0.0 3.4 3 0 0 3 3 3 1 CoA binding domain TPM_phosphatase PF04536.14 gi|88603897|ref|YP_504075.1| - 0.016 15.4 0.1 4.5 7.5 0.0 3.2 3 0 0 3 3 3 0 TPM domain DUF2202 PF09968.9 gi|88603898|ref|YP_504076.1| - 3e-42 144.2 0.1 3.7e-42 143.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Arabino_trans_N PF17689.1 gi|88603898|ref|YP_504076.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Arabinosyltransferase concanavalin like domain DUF4405 PF14358.6 gi|88603900|ref|YP_504078.1| - 4.8e-10 39.8 5.6 6.6e-10 39.4 5.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|88603900|ref|YP_504078.1| - 9.5e-05 22.1 1.3 0.00011 21.8 1.3 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Ferric_reduct PF01794.19 gi|88603900|ref|YP_504078.1| - 0.0047 17.0 1.6 0.0058 16.7 1.6 1.1 1 0 0 1 1 1 1 Ferric reductase like transmembrane component E1-E2_ATPase PF00122.20 gi|88603901|ref|YP_504079.1| - 7.6e-47 159.2 0.1 7.6e-47 159.2 0.0 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|88603901|ref|YP_504079.1| - 7.4e-31 107.3 10.4 7.4e-31 107.3 10.4 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|88603901|ref|YP_504079.1| - 7.6e-26 91.7 0.0 2.4e-25 90.1 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|88603901|ref|YP_504079.1| - 3.1e-09 36.4 0.0 7.5e-09 35.2 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|88603901|ref|YP_504079.1| - 8.9e-06 25.6 0.3 0.00093 19.0 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|88603901|ref|YP_504079.1| - 1.2e-05 25.3 0.0 2.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|88603901|ref|YP_504079.1| - 0.0002 21.8 0.0 0.00054 20.4 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|88603901|ref|YP_504079.1| - 0.053 13.6 0.1 3.7 7.6 0.0 3.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase FHA PF00498.26 gi|88603904|ref|YP_504082.1| - 4.7e-11 42.9 0.0 8.6e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|88603904|ref|YP_504082.1| - 1e-06 29.0 0.0 7.1e-06 26.3 0.0 2.0 1 1 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain HTH_20 PF12840.7 gi|88603904|ref|YP_504082.1| - 1.2e-06 28.4 0.0 2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|88603904|ref|YP_504082.1| - 2.9e-06 27.1 0.2 8.5e-05 22.3 0.1 2.4 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|88603904|ref|YP_504082.1| - 0.013 15.1 0.5 0.91 9.1 0.1 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2551 PF10826.8 gi|88603904|ref|YP_504082.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) Pkinase PF00069.25 gi|88603905|ref|YP_504083.1| - 2.7e-32 112.2 0.0 3.9e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|88603905|ref|YP_504083.1| - 8.8e-20 71.1 0.0 1.4e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|88603905|ref|YP_504083.1| - 9.8e-07 28.4 0.0 1.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Kinase-like APH PF01636.23 gi|88603905|ref|YP_504083.1| - 0.031 14.2 0.0 0.17 11.8 0.0 1.8 1 1 1 2 2 2 0 Phosphotransferase enzyme family Seadorna_VP7 PF07387.11 gi|88603905|ref|YP_504083.1| - 0.21 10.6 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Seadornavirus VP7 Cache_3-Cache_2 PF17201.4 gi|88603906|ref|YP_504084.1| - 5.9e-78 262.1 1.1 5.9e-78 262.1 1.1 3.1 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain MCPsignal PF00015.21 gi|88603906|ref|YP_504084.1| - 5.8e-44 149.9 55.8 3e-42 144.3 25.9 3.9 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|88603906|ref|YP_504084.1| - 1.2e-35 122.2 2.1 1.2e-35 122.2 2.1 2.5 2 0 0 2 2 2 1 Single cache domain 3 dCache_1 PF02743.18 gi|88603906|ref|YP_504084.1| - 6.9e-14 52.2 1.5 6.9e-14 52.2 1.5 3.1 2 1 0 2 2 1 1 Cache domain dCache_2 PF08269.11 gi|88603906|ref|YP_504084.1| - 2.8e-12 46.4 0.2 2.8e-12 46.4 0.2 3.3 3 0 0 3 3 3 1 Cache domain sCache_2 PF17200.4 gi|88603906|ref|YP_504084.1| - 2.8e-11 43.5 0.1 2.8e-11 43.5 0.1 2.6 2 1 1 3 3 2 1 Single Cache domain 2 sCache_3_2 PF17203.4 gi|88603906|ref|YP_504084.1| - 6.9e-11 42.4 3.7 3.7e-09 36.8 0.3 3.8 2 2 1 3 3 3 1 Single cache domain 3 HAMP PF00672.25 gi|88603906|ref|YP_504084.1| - 6.5e-06 26.4 7.8 4.3e-05 23.8 0.0 5.4 6 2 1 7 7 5 1 HAMP domain DUF1664 PF07889.12 gi|88603906|ref|YP_504084.1| - 1.7e-05 24.9 27.8 0.018 15.0 2.3 4.8 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Collagen_mid PF15984.5 gi|88603906|ref|YP_504084.1| - 2.1e-05 24.4 21.3 0.001 18.9 9.3 2.7 2 0 0 2 2 2 2 Bacterial collagen, middle region DUF948 PF06103.11 gi|88603906|ref|YP_504084.1| - 0.00024 21.3 43.2 0.0076 16.5 3.5 6.9 4 2 3 7 7 7 2 Bacterial protein of unknown function (DUF948) Dicistro_VP4 PF11492.8 gi|88603906|ref|YP_504084.1| - 0.0012 18.7 1.5 0.47 10.5 0.1 3.5 2 0 0 2 2 2 1 Cricket paralysis virus, VP4 BLOC1_2 PF10046.9 gi|88603906|ref|YP_504084.1| - 0.039 14.2 23.6 2.5 8.5 1.6 5.1 2 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 gi|88603906|ref|YP_504084.1| - 0.047 13.7 29.1 0.15 12.2 0.0 4.7 4 1 1 5 5 5 0 TPR/MLP1/MLP2-like protein Mce4_CUP1 PF11887.8 gi|88603906|ref|YP_504084.1| - 0.052 13.0 9.8 0.048 13.1 1.3 3.1 2 2 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative HAMP_N3 PF18575.1 gi|88603906|ref|YP_504084.1| - 0.061 12.9 0.1 2.3 7.9 0.0 3.6 4 0 0 4 4 3 0 HAMP N-terminal domain 3 ATG16 PF08614.11 gi|88603906|ref|YP_504084.1| - 0.33 11.2 24.6 0.29 11.4 6.7 4.0 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) DUF4200 PF13863.6 gi|88603906|ref|YP_504084.1| - 1 9.8 16.9 2.1 8.8 1.6 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4200) Sec34 PF04136.15 gi|88603906|ref|YP_504084.1| - 1.1 9.2 15.6 3 7.7 0.6 5.1 3 2 3 6 6 6 0 Sec34-like family AAA_13 PF13166.6 gi|88603906|ref|YP_504084.1| - 1.2 7.7 27.7 1.3 7.6 17.1 2.2 1 1 1 2 2 2 0 AAA domain SlyX PF04102.12 gi|88603906|ref|YP_504084.1| - 1.2 9.7 8.5 18 6.0 0.3 4.2 3 1 1 4 4 3 0 SlyX WXG100 PF06013.12 gi|88603906|ref|YP_504084.1| - 1.5 9.1 27.9 1.2 9.4 5.9 6.1 5 0 0 5 5 5 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.22 gi|88603906|ref|YP_504084.1| - 3 8.1 25.9 0.096 12.9 1.4 4.7 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain FUSC PF04632.12 gi|88603906|ref|YP_504084.1| - 3.1 6.2 13.8 0.78 8.2 1.7 2.5 2 1 0 3 3 3 0 Fusaric acid resistance protein family Fez1 PF06818.15 gi|88603906|ref|YP_504084.1| - 5.6 7.4 22.1 6.1e+03 -2.5 0.0 3.2 2 1 0 2 2 1 0 Fez1 Sigma70_ner PF04546.13 gi|88603906|ref|YP_504084.1| - 6.2 6.6 13.8 11 5.8 6.1 3.1 1 1 1 2 2 2 0 Sigma-70, non-essential region RsbRD_N PF14361.6 gi|88603907|ref|YP_504085.1| - 2.2e-11 44.4 0.1 2.8e-11 44.0 0.1 1.1 1 0 0 1 1 1 1 RsbT co-antagonist protein rsbRD N-terminal domain Response_reg PF00072.24 gi|88603908|ref|YP_504086.1| - 7.9e-22 77.5 0.1 1.3e-21 76.8 0.1 1.4 1 1 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|88603908|ref|YP_504086.1| - 2e-05 24.5 0.0 7.8e-05 22.6 0.0 2.0 1 1 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|88603908|ref|YP_504086.1| - 0.00032 20.9 0.0 0.00075 19.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88603908|ref|YP_504086.1| - 0.013 15.5 0.0 0.039 14.0 0.0 1.8 2 0 0 2 2 2 0 PAS fold PAS_4 PF08448.10 gi|88603908|ref|YP_504086.1| - 0.017 15.4 0.0 0.065 13.5 0.0 1.9 2 0 0 2 2 2 0 PAS fold PAS_4 PF08448.10 gi|88603909|ref|YP_504087.1| - 2.1e-32 111.6 0.0 1.9e-16 60.3 0.0 4.8 6 0 0 6 6 6 2 PAS fold PAS_9 PF13426.7 gi|88603909|ref|YP_504087.1| - 7.2e-23 80.8 0.0 4.7e-11 42.9 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|88603909|ref|YP_504087.1| - 1.5e-14 54.0 0.0 9.1e-08 32.1 0.0 4.2 3 1 1 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|88603909|ref|YP_504087.1| - 1.8e-12 47.0 0.0 0.0015 18.5 0.0 3.9 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|88603909|ref|YP_504087.1| - 9.8e-12 45.4 0.1 1.8e-11 44.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|88603909|ref|YP_504087.1| - 2e-09 38.0 0.0 0.00087 19.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|88603909|ref|YP_504087.1| - 4.1e-06 27.0 0.0 0.0026 18.0 0.0 3.3 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|88603909|ref|YP_504087.1| - 0.0035 17.3 2.0 0.014 15.5 0.1 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|88603909|ref|YP_504087.1| - 0.0044 16.9 0.1 0.013 15.3 0.1 1.8 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.6 gi|88603909|ref|YP_504087.1| - 0.05 13.3 0.2 0.23 11.2 0.2 2.2 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Response_reg PF00072.24 gi|88603910|ref|YP_504088.1| - 3.3e-19 69.1 0.0 4.1e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Laminin_G_3 PF13385.6 gi|88603911|ref|YP_504089.1| - 8.1e-17 61.8 1.6 2.6e-16 60.1 1.7 1.8 1 1 1 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Pilin_N PF07790.11 gi|88603911|ref|YP_504089.1| - 1.1e-07 32.7 0.5 2.3e-07 31.6 0.5 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal MFS_4 PF06779.14 gi|88603912|ref|YP_504090.1| - 0.0088 15.4 0.3 0.0096 15.2 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Phage_holin_3_6 PF07332.11 gi|88603912|ref|YP_504090.1| - 0.04 14.0 3.1 0.05 13.6 3.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3784 PF12650.7 gi|88603912|ref|YP_504090.1| - 0.046 13.9 7.8 0.063 13.5 7.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Halogen_Hydrol PF10112.9 gi|88603912|ref|YP_504090.1| - 0.067 13.2 0.3 0.074 13.1 0.3 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein FixQ PF05545.11 gi|88603912|ref|YP_504090.1| - 0.071 13.1 0.9 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ EphA2_TM PF14575.6 gi|88603912|ref|YP_504090.1| - 0.097 13.6 0.1 0.097 13.6 0.1 1.9 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain TMEM154 PF15102.6 gi|88603912|ref|YP_504090.1| - 0.1 12.5 0.3 0.12 12.3 0.3 1.3 1 0 0 1 1 1 0 TMEM154 protein family DUF2207 PF09972.9 gi|88603912|ref|YP_504090.1| - 0.21 10.3 2.5 0.24 10.1 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2254 PF10011.9 gi|88603912|ref|YP_504090.1| - 1.2 7.9 4.2 1.5 7.6 4.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF3084 PF11283.8 gi|88603912|ref|YP_504090.1| - 1.8 8.6 8.6 1.1 9.2 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3084) Pox_A14 PF05767.12 gi|88603912|ref|YP_504090.1| - 2.4 8.4 7.6 4.7 7.4 0.3 2.3 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 HATPase_c PF02518.26 gi|88603913|ref|YP_504091.1| - 3.1e-13 50.2 0.1 4.5e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|88603913|ref|YP_504091.1| - 0.00028 20.7 0.0 0.00044 20.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|88603913|ref|YP_504091.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|88603913|ref|YP_504091.1| - 0.049 13.5 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 GHKL domain PAS_3 PF08447.12 gi|88603914|ref|YP_504092.1| - 4e-06 27.0 0.2 1.1e-05 25.7 0.2 1.8 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|88603915|ref|YP_504093.1| - 4.6e-16 59.0 0.0 1.2e-10 41.6 0.0 2.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88603915|ref|YP_504093.1| - 6.2e-15 55.3 0.1 1.8e-10 41.0 0.0 2.1 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|88603915|ref|YP_504093.1| - 3.4e-07 30.2 0.0 1.3e-05 25.1 0.0 2.5 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|88603915|ref|YP_504093.1| - 3.8e-06 27.1 0.0 7.5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 PAS fold DUF874 PF05917.11 gi|88603915|ref|YP_504093.1| - 0.036 13.1 0.0 0.046 12.8 0.0 1.1 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) Pilin_N PF07790.11 gi|88603916|ref|YP_504094.1| - 1.2e-10 42.2 2.1 2e-10 41.5 2.1 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Inhibitor_I42 PF09394.10 gi|88603917|ref|YP_504095.1| - 6.5e-23 81.0 0.8 1.4e-22 79.9 0.8 1.6 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 CheX PF13690.6 gi|88603918|ref|YP_504096.1| - 5.7e-05 23.2 0.0 0.025 14.7 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Seadorna_VP6 PF07407.11 gi|88603918|ref|YP_504096.1| - 0.012 14.5 0.0 0.014 14.3 0.0 1.0 1 0 0 1 1 1 0 Seadornavirus VP6 protein CheC PF04509.12 gi|88603918|ref|YP_504096.1| - 0.04 13.8 0.4 4.9 7.1 0.0 2.4 2 0 0 2 2 2 0 CheC-like family HATPase_c PF02518.26 gi|88603919|ref|YP_504097.1| - 1.8e-12 47.8 0.8 3.2e-12 46.9 0.2 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88603919|ref|YP_504097.1| - 1.3e-07 31.6 0.0 6.2e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88603919|ref|YP_504097.1| - 1.1e-06 28.9 0.1 3.7e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|88603919|ref|YP_504097.1| - 0.0003 20.7 0.0 0.00084 19.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88603919|ref|YP_504097.1| - 0.00055 20.2 0.0 0.0011 19.2 0.0 1.6 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|88603919|ref|YP_504097.1| - 0.0062 16.5 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|88603919|ref|YP_504097.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88603919|ref|YP_504097.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Response_reg PF00072.24 gi|88603920|ref|YP_504098.1| - 3.4e-27 94.8 0.1 3.9e-27 94.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheX PF13690.6 gi|88603921|ref|YP_504099.1| - 1.5e-12 47.5 1.9 1.4e-09 38.0 0.1 2.9 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX CheC PF04509.12 gi|88603921|ref|YP_504099.1| - 0.0004 20.2 0.5 0.15 12.0 0.0 2.6 2 0 0 2 2 2 2 CheC-like family Response_reg PF00072.24 gi|88603922|ref|YP_504100.1| - 4.5e-21 75.1 2.0 1.7e-20 73.3 0.1 2.5 2 1 1 3 3 3 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88603922|ref|YP_504100.1| - 1.4e-08 34.9 0.0 3e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|88603922|ref|YP_504100.1| - 1.3e-07 31.6 0.0 3.9e-07 30.1 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|88603922|ref|YP_504100.1| - 0.00011 22.4 0.0 0.00025 21.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|88603922|ref|YP_504100.1| - 0.0067 16.4 0.0 0.022 14.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|88603922|ref|YP_504100.1| - 0.037 14.1 0.1 0.11 12.6 0.1 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Acyl_transf_1 PF00698.21 gi|88603922|ref|YP_504100.1| - 0.086 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase domain Spore_YpjB PF09577.10 gi|88603922|ref|YP_504100.1| - 0.11 12.3 0.3 0.19 11.5 0.3 1.3 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) HisKA_2 PF07568.12 gi|88603923|ref|YP_504101.1| - 2.3e-31 107.7 3.5 4.5e-31 106.8 3.5 1.5 1 0 0 1 1 1 1 Histidine kinase HWE_HK PF07536.14 gi|88603923|ref|YP_504101.1| - 6.3e-07 30.0 0.2 1e-06 29.4 0.2 1.3 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|88603923|ref|YP_504101.1| - 3.8e-06 26.9 0.0 6.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|88603923|ref|YP_504101.1| - 6.1e-06 26.7 0.0 1.4e-05 25.5 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SAPIS-gp6 PF16722.5 gi|88603923|ref|YP_504101.1| - 0.015 15.7 1.2 0.05 14.0 0.7 2.0 1 1 1 2 2 2 0 Pathogenicity island protein gp6 in Staphylococcus PAS_9 PF13426.7 gi|88603924|ref|YP_504102.1| - 1.2e-27 96.2 3.7 1.6e-12 47.6 0.0 5.0 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.12 gi|88603924|ref|YP_504102.1| - 3.1e-27 94.7 0.1 3.6e-10 40.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|88603924|ref|YP_504102.1| - 7.6e-22 77.6 0.9 1.6e-07 31.5 0.0 6.3 6 0 0 6 6 6 4 PAS fold PAS PF00989.25 gi|88603924|ref|YP_504102.1| - 3e-20 72.3 2.8 1.3e-09 38.0 0.0 5.3 6 0 0 6 6 6 3 PAS fold PAS_8 PF13188.7 gi|88603924|ref|YP_504102.1| - 7e-17 61.0 0.0 8.9e-08 32.0 0.0 4.5 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|88603924|ref|YP_504102.1| - 2e-09 37.6 0.5 1e-06 28.9 0.1 3.8 3 1 1 4 4 4 1 PAS fold dCache_1 PF02743.18 gi|88603924|ref|YP_504102.1| - 4e-09 36.6 2.3 1.2e-08 35.1 0.1 2.5 2 0 0 2 2 2 1 Cache domain MLTR_LBD PF17765.1 gi|88603924|ref|YP_504102.1| - 0.0082 16.3 0.9 0.25 11.5 0.0 2.8 3 0 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain Hormone_1 PF00103.20 gi|88603924|ref|YP_504102.1| - 0.071 12.9 4.0 6.2 6.5 1.4 2.4 2 0 0 2 2 2 0 Somatotropin hormone family Exonuc_VII_L PF02601.15 gi|88603924|ref|YP_504102.1| - 0.15 11.6 2.4 5.4 6.5 0.2 2.6 2 0 0 2 2 2 0 Exonuclease VII, large subunit LMP PF04778.12 gi|88603924|ref|YP_504102.1| - 0.22 11.4 4.8 0.84 9.5 1.3 2.4 2 0 0 2 2 2 0 LMP repeated region Syntaxin-6_N PF09177.11 gi|88603924|ref|YP_504102.1| - 7.1 7.3 9.9 1.7 9.3 2.4 2.8 2 0 0 2 2 2 0 Syntaxin 6, N-terminal HATPase_c PF02518.26 gi|88603925|ref|YP_504103.1| - 9.5e-33 113.1 0.3 1.7e-32 112.2 0.3 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|88603925|ref|YP_504103.1| - 7.4e-26 91.5 0.3 7.4e-26 91.5 0.3 2.0 2 0 0 2 2 2 1 Cache domain HisKA PF00512.25 gi|88603925|ref|YP_504103.1| - 8e-19 67.5 0.4 3.6e-18 65.4 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 gi|88603925|ref|YP_504103.1| - 1.1e-08 35.3 0.0 2.3e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|88603925|ref|YP_504103.1| - 0.00091 18.6 1.4 0.0032 16.8 0.0 2.4 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain HATPase_c_5 PF14501.6 gi|88603925|ref|YP_504103.1| - 0.0017 18.2 0.1 0.0042 17.0 0.1 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|88603925|ref|YP_504103.1| - 0.0018 18.1 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RecG_N PF17190.4 gi|88603925|ref|YP_504103.1| - 0.046 14.4 1.6 0.16 12.7 1.6 1.9 1 0 0 1 1 1 0 RecG N-terminal helical domain Importin_rep_6 PF18829.1 gi|88603925|ref|YP_504103.1| - 0.054 13.6 0.6 0.14 12.3 0.6 1.7 1 0 0 1 1 1 0 Importin repeat 6 DUF4047 PF13256.6 gi|88603925|ref|YP_504103.1| - 0.056 13.6 0.4 0.17 12.1 0.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) DUF4281 PF14108.6 gi|88603925|ref|YP_504103.1| - 0.12 12.7 0.2 0.28 11.6 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4281) DUF4179 PF13786.6 gi|88603925|ref|YP_504103.1| - 0.17 12.4 0.1 16 6.0 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4179) Syntaxin_2 PF14523.6 gi|88603925|ref|YP_504103.1| - 0.81 10.1 7.7 0.15 12.5 3.1 2.1 2 0 0 2 2 2 0 Syntaxin-like protein Response_reg PF00072.24 gi|88603926|ref|YP_504104.1| - 3.6e-28 98.0 0.1 4e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|88603927|ref|YP_504105.1| - 2.1e-26 92.3 0.0 6.1e-26 90.8 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|88603927|ref|YP_504105.1| - 3.5e-10 40.1 0.0 9.3e-10 38.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88603927|ref|YP_504105.1| - 1.5e-08 34.8 0.0 3.3e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|88603927|ref|YP_504105.1| - 7.9e-06 25.9 0.1 2.4e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|88603927|ref|YP_504105.1| - 4.4e-05 23.4 0.0 0.00014 21.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|88603927|ref|YP_504105.1| - 5.9e-05 23.3 0.0 0.00012 22.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PBP_dimer PF03717.15 gi|88603927|ref|YP_504105.1| - 0.022 15.1 0.2 0.036 14.4 0.2 1.3 1 0 0 1 1 1 0 Penicillin-binding Protein dimerisation domain HisKA PF00512.25 gi|88603927|ref|YP_504105.1| - 0.024 14.7 0.7 0.91 9.6 0.0 3.5 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain DASH_Dam1 PF08653.10 gi|88603927|ref|YP_504105.1| - 0.29 11.0 0.9 3.6 7.4 0.1 2.7 2 0 0 2 2 2 0 DASH complex subunit Dam1 Mod_r PF07200.13 gi|88603927|ref|YP_504105.1| - 0.39 10.8 4.7 0.21 11.7 1.7 2.1 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein ENT PF03735.14 gi|88603927|ref|YP_504105.1| - 0.8 9.8 3.7 1.5 8.9 0.7 3.0 3 1 0 3 3 3 0 ENT domain PAS_4 PF08448.10 gi|88603929|ref|YP_504107.1| - 1.2e-41 141.3 0.0 2.1e-17 63.3 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|88603929|ref|YP_504107.1| - 1.2e-36 125.1 0.0 2.7e-11 43.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88603929|ref|YP_504107.1| - 2.7e-35 120.7 0.0 3.7e-10 40.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|88603929|ref|YP_504107.1| - 1e-16 60.5 0.0 0.00028 20.8 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|88603929|ref|YP_504107.1| - 2.5e-16 59.7 0.0 7.2e-06 26.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.6 gi|88603929|ref|YP_504107.1| - 1.8e-12 47.8 0.0 4.1e-05 24.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|88603929|ref|YP_504107.1| - 5e-10 39.6 0.0 0.00022 21.4 0.0 4.5 3 3 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|88603929|ref|YP_504107.1| - 1.1e-09 38.8 0.1 2.3e-09 37.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88603929|ref|YP_504107.1| - 0.0032 17.5 0.2 0.01 15.8 0.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain sCache_3_3 PF17202.4 gi|88603929|ref|YP_504107.1| - 0.012 16.0 0.0 5.5 7.5 0.0 2.8 2 0 0 2 2 2 0 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|88603929|ref|YP_504107.1| - 0.022 14.0 0.0 4.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Cache 3/Cache 2 fusion domain ZNRF_3_ecto PF18212.1 gi|88603929|ref|YP_504107.1| - 0.07 13.1 0.1 6.8 6.7 0.0 2.5 2 0 0 2 2 2 0 ZNRF-3 Ectodomain PDDEXK_2 PF12784.7 gi|88603930|ref|YP_504108.1| - 1e-60 205.2 5.4 1e-60 205.2 5.4 1.6 2 0 0 2 2 2 1 PD-(D/E)XK nuclease family transposase Peptidase_C54 PF03416.19 gi|88603930|ref|YP_504108.1| - 0.11 11.9 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Peptidase family C54 PDDEXK_2 PF12784.7 gi|88603931|ref|YP_504109.1| - 1.7e-60 204.4 5.6 1.7e-60 204.4 5.6 1.6 2 0 0 2 2 2 1 PD-(D/E)XK nuclease family transposase PDDEXK_2 PF12784.7 gi|88603932|ref|YP_504110.1| - 4e-69 232.7 1.9 5e-69 232.3 1.9 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase PDDEXK_2 PF12784.7 gi|88603933|ref|YP_504111.1| - 7.6e-12 45.3 1.8 6.7e-05 22.5 0.1 2.3 2 0 0 2 2 2 2 PD-(D/E)XK nuclease family transposase Vac14_Fab1_bd PF12755.7 gi|88603933|ref|YP_504111.1| - 0.0061 17.1 0.0 0.46 11.1 0.0 2.3 2 0 0 2 2 2 1 Vacuolar 14 Fab1-binding region TetR_C_35 PF18556.1 gi|88603933|ref|YP_504111.1| - 0.013 15.6 0.0 7.4 6.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial Tetracyclin repressor, C-terminal domain RepB PF07506.11 gi|88603933|ref|YP_504111.1| - 0.02 15.0 0.6 0.8 9.8 0.0 2.4 3 0 0 3 3 3 0 RepB plasmid partitioning protein APC_rep PF18797.1 gi|88603933|ref|YP_504111.1| - 0.031 15.2 0.3 15 6.6 0.1 2.7 3 0 0 3 3 3 0 Adenomatous polyposis coli (APC) repeat MBF1 PF08523.10 gi|88603933|ref|YP_504111.1| - 0.048 14.1 0.0 1.2 9.6 0.0 2.4 2 0 0 2 2 2 0 Multiprotein bridging factor 1 ERCC3_RAD25_C PF16203.5 gi|88603933|ref|YP_504111.1| - 0.091 12.0 0.2 0.93 8.6 0.1 2.0 2 0 0 2 2 2 0 ERCC3/RAD25/XPB C-terminal helicase Raf1_HTH PF18579.1 gi|88603933|ref|YP_504111.1| - 0.092 12.5 0.1 6.5 6.5 0.0 2.8 2 1 1 3 3 3 0 Rubisco accumulation factor 1 helix turn helix domain UL41A PF17591.2 gi|88603933|ref|YP_504111.1| - 0.17 12.0 0.0 4 7.6 0.0 2.2 2 0 0 2 2 2 0 Herpesvirus UL41A PUB_1 PF18486.1 gi|88603933|ref|YP_504111.1| - 1.9 8.4 6.1 9.8 6.1 0.9 2.3 2 0 0 2 2 2 0 PNGase/UBA- or UBX-containing domain Nepo_coat_N PF03689.15 gi|88603934|ref|YP_504112.1| - 0.045 13.7 0.0 0.095 12.6 0.0 1.6 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain Pilin_N PF07790.11 gi|88603935|ref|YP_504113.1| - 8.4e-08 33.0 0.2 0.0019 19.1 0.1 2.3 2 0 0 2 2 2 2 Archaeal Type IV pilin, N-terminal DUF2574 PF10836.8 gi|88603935|ref|YP_504113.1| - 0.11 12.4 0.2 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2574) Pilin_N PF07790.11 gi|88603936|ref|YP_504114.1| - 1.3e-16 61.2 0.1 2.3e-16 60.4 0.1 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|88603937|ref|YP_504115.1| - 2.9e-08 34.5 0.2 4.7e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal HTH_AraC PF00165.23 gi|88603937|ref|YP_504115.1| - 0.16 12.1 0.1 0.28 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4114 PF13448.6 gi|88603938|ref|YP_504116.1| - 2.7e-07 31.3 0.0 5.7e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4114) Tudor_2 PF18104.1 gi|88603938|ref|YP_504116.1| - 0.028 14.1 0.6 0.68 9.7 0.0 2.8 2 0 0 2 2 2 0 Jumonji domain-containing protein 2A Tudor domain Nucleo_P87 PF07267.11 gi|88603939|ref|YP_504117.1| - 0.053 12.4 0.4 0.065 12.1 0.4 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Polbeta PF18765.1 gi|88603941|ref|YP_504119.1| - 3.3e-12 46.3 1.0 4.1e-12 46.0 1.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88603941|ref|YP_504119.1| - 1.1e-11 44.9 0.3 1.6e-11 44.4 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain PKcGMP_CC PF16808.5 gi|88603941|ref|YP_504119.1| - 0.051 13.4 7.5 0.064 13.1 1.4 2.3 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase MdcG PF10620.9 gi|88603941|ref|YP_504119.1| - 0.067 13.0 0.1 0.078 12.7 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|88603942|ref|YP_504120.1| - 6.4e-17 61.5 1.1 7.3e-17 61.3 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 RasGAP PF00616.19 gi|88603942|ref|YP_504120.1| - 0.011 15.5 0.3 0.011 15.5 0.3 1.1 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase DUF2251 PF10008.9 gi|88603942|ref|YP_504120.1| - 0.11 12.6 0.1 0.13 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2251) MatP_C PF17414.2 gi|88603943|ref|YP_504121.1| - 0.059 13.6 0.0 0.09 13.0 0.0 1.5 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain ParE_toxin PF05016.15 gi|88603944|ref|YP_504122.1| - 0.013 16.1 0.5 0.014 16.0 0.5 1.2 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE DUF4277 PF14104.6 gi|88603947|ref|YP_504125.1| - 2.3e-40 137.3 0.0 5e-40 136.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|88603947|ref|YP_504125.1| - 2.1e-11 43.9 0.0 1.5e-10 41.1 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|88603947|ref|YP_504125.1| - 0.11 12.2 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 DDE superfamily endonuclease PIN PF01850.21 gi|88603948|ref|YP_504126.1| - 3.5e-17 63.0 0.1 4.9e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 PIN domain Toxin_trans PF07952.12 gi|88603948|ref|YP_504126.1| - 0.03 13.4 0.1 0.03 13.4 0.1 1.1 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain DUF104 PF01954.16 gi|88603949|ref|YP_504127.1| - 3.4e-11 43.4 0.0 3.5e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 NTP_transf_2 PF01909.23 gi|88603950|ref|YP_504128.1| - 3.8e-12 46.3 0.0 4.9e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88603950|ref|YP_504128.1| - 2.4e-10 40.4 0.0 3.5e-10 39.8 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HicA_toxin PF07927.12 gi|88603951|ref|YP_504129.1| - 2.8e-14 52.9 0.1 3.3e-14 52.7 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|88603952|ref|YP_504130.1| - 0.0002 21.5 0.0 0.0002 21.4 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system ATP-synt_D PF01813.17 gi|88603952|ref|YP_504130.1| - 0.073 12.9 0.0 0.076 12.8 0.0 1.1 1 0 0 1 1 1 0 ATP synthase subunit D CmcI PF04989.12 gi|88603952|ref|YP_504130.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Cephalosporin hydroxylase ANAPC3 PF12895.7 gi|88603953|ref|YP_504131.1| - 0.0042 17.3 0.1 0.56 10.5 0.0 2.9 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF1897 PF09005.10 gi|88603953|ref|YP_504131.1| - 0.17 11.4 3.4 0.14 11.7 1.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1897) TPR_12 PF13424.6 gi|88603953|ref|YP_504131.1| - 0.33 11.3 1.9 2.2 8.6 0.1 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|88603954|ref|YP_504132.1| - 3.2e-15 56.2 0.0 8.1e-14 51.7 0.0 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88603954|ref|YP_504132.1| - 3.4e-14 52.7 0.0 6e-14 51.9 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|88603954|ref|YP_504132.1| - 0.014 15.6 0.0 0.022 14.9 0.0 1.4 1 1 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.13 gi|88603954|ref|YP_504132.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HisKA_7TM PF16927.5 gi|88603955|ref|YP_504133.1| - 2.3e-48 165.1 34.4 3.2e-48 164.7 34.4 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|88603955|ref|YP_504133.1| - 2e-07 31.5 0.0 3.8e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|88603955|ref|YP_504133.1| - 0.00018 21.5 0.0 0.00061 19.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|88603955|ref|YP_504133.1| - 0.007 16.5 0.0 0.17 12.0 0.0 2.6 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|88603955|ref|YP_504133.1| - 0.019 15.0 0.0 0.063 13.3 0.0 1.9 2 0 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 gi|88603955|ref|YP_504133.1| - 0.042 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|88603955|ref|YP_504133.1| - 0.097 12.9 0.0 0.56 10.5 0.0 2.1 1 1 0 1 1 1 0 PAS fold DUF2892 PF11127.8 gi|88603955|ref|YP_504133.1| - 2.9 8.0 7.1 1.1 9.3 2.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) HicB_lk_antitox PF15919.5 gi|88603956|ref|YP_504134.1| - 0.016 15.4 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Polbeta PF18765.1 gi|88603957|ref|YP_504135.1| - 2.1e-06 27.7 0.0 2.4e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88603957|ref|YP_504135.1| - 3.4e-06 27.2 0.1 3.7e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|88603957|ref|YP_504135.1| - 0.0033 17.6 0.1 0.0049 17.1 0.1 1.3 1 1 0 1 1 1 1 DNA polymerase beta palm End_tail_spike PF12219.8 gi|88603957|ref|YP_504135.1| - 0.048 13.7 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Catalytic domain of bacteriophage endosialidase DUF86 PF01934.17 gi|88603958|ref|YP_504136.1| - 0.027 14.3 0.1 0.063 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF86 AAA-ATPase_like PF09820.9 gi|88603959|ref|YP_504137.1| - 1.7e-31 109.7 0.2 1.9e-31 109.5 0.2 1.1 1 0 0 1 1 1 1 Predicted AAA-ATPase 5_nucleotid_C PF02872.18 gi|88603960|ref|YP_504138.1| - 5.6e-43 146.9 0.2 1.2e-42 145.8 0.2 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|88603960|ref|YP_504138.1| - 1e-07 32.7 0.1 2e-07 31.7 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pkinase PF00069.25 gi|88603961|ref|YP_504139.1| - 1.9e-06 27.4 0.0 3.2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|88603961|ref|YP_504139.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Phosphotransferase enzyme family Kdo PF06293.14 gi|88603961|ref|YP_504139.1| - 0.15 11.4 0.0 0.61 9.4 0.0 1.8 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family PP2C_2 PF13672.6 gi|88603962|ref|YP_504140.1| - 2.5e-45 154.7 0.1 3.5e-45 154.2 0.1 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C VWA PF00092.28 gi|88603963|ref|YP_504141.1| - 2.8e-10 40.7 0.0 4.6e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|88603963|ref|YP_504141.1| - 9.4e-08 32.7 0.0 1.7e-07 31.8 0.0 1.4 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|88603963|ref|YP_504141.1| - 0.001 19.0 0.0 0.032 14.2 0.0 2.2 1 1 0 1 1 1 1 von Willebrand factor type A domain HycI PF01750.18 gi|88603964|ref|YP_504142.1| - 1e-18 67.4 0.0 1.3e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease FliD_N PF02465.18 gi|88603965|ref|YP_504143.1| - 0.015 16.0 1.5 0.026 15.2 1.5 1.6 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus DUF1465 PF07323.12 gi|88603965|ref|YP_504143.1| - 0.017 15.0 1.3 0.03 14.1 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) DUF2443 PF10398.9 gi|88603965|ref|YP_504143.1| - 0.021 14.9 7.3 0.034 14.2 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2443) Nucleoporin_FG2 PF15967.5 gi|88603965|ref|YP_504143.1| - 0.047 12.2 0.8 0.052 12.1 0.8 1.2 1 0 0 1 1 1 0 Nucleoporin FG repeated region DUF4266 PF14086.6 gi|88603965|ref|YP_504143.1| - 0.07 14.1 3.5 7.1 7.7 0.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4266) YabA PF06156.13 gi|88603965|ref|YP_504143.1| - 0.23 12.1 5.6 0.59 10.8 5.6 1.8 1 1 0 1 1 1 0 Initiation control protein YabA Fib_alpha PF08702.10 gi|88603965|ref|YP_504143.1| - 0.31 11.2 6.9 0.073 13.3 3.6 1.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family eIF3_N PF09440.10 gi|88603965|ref|YP_504143.1| - 0.4 11.1 5.6 0.12 12.8 1.9 1.9 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain DEAD PF00270.29 gi|88603966|ref|YP_504144.1| - 3.9e-26 91.9 0.0 6.1e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|88603966|ref|YP_504144.1| - 6e-20 71.8 0.7 1.7e-19 70.3 0.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|88603966|ref|YP_504144.1| - 2.7e-12 47.0 0.0 2.7e-11 43.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|88603966|ref|YP_504144.1| - 0.00015 21.9 0.0 0.00021 21.3 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HobA PF12163.8 gi|88603966|ref|YP_504144.1| - 0.062 12.9 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 DNA replication regulator RNase_H_2 PF13482.6 gi|88603967|ref|YP_504145.1| - 5.5e-35 120.8 0.0 7.5e-35 120.4 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 gi|88603967|ref|YP_504145.1| - 0.00018 20.7 0.0 0.0003 20.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|88603967|ref|YP_504145.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_lambd_f PF10391.9 gi|88603967|ref|YP_504145.1| - 0.026 14.4 0.0 0.054 13.3 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 gi|88603967|ref|YP_504145.1| - 0.13 12.9 0.0 0.54 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain Polyhedrin PF00738.18 gi|88603967|ref|YP_504145.1| - 0.21 10.9 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Polyhedrin FMN_red PF03358.15 gi|88603968|ref|YP_504146.1| - 5.7e-22 78.1 0.0 6.7e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88603968|ref|YP_504146.1| - 1.1e-11 44.8 0.0 1.6e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|88603968|ref|YP_504146.1| - 0.11 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain FMN_red PF03358.15 gi|88603969|ref|YP_504147.1| - 8.4e-19 67.8 0.0 1e-18 67.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88603969|ref|YP_504147.1| - 1.9e-08 34.2 0.0 3.4e-08 33.4 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold AhpC-TSA PF00578.21 gi|88603970|ref|YP_504148.1| - 2.6e-35 121.0 0.0 3.7e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|88603970|ref|YP_504148.1| - 3.5e-21 75.5 0.0 5.1e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|88603970|ref|YP_504148.1| - 1.3e-16 60.1 1.5 2.4e-16 59.3 1.5 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin CMD PF02627.20 gi|88603971|ref|YP_504149.1| - 9.1e-17 60.9 0.1 1.2e-16 60.5 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family SinI PF08671.10 gi|88603971|ref|YP_504149.1| - 0.059 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Anti-repressor SinI Desulfoferrod_N PF06397.12 gi|88603972|ref|YP_504150.1| - 3.6e-19 68.1 9.6 4e-19 67.9 9.6 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain DUF3449 PF11931.8 gi|88603972|ref|YP_504150.1| - 0.1 12.4 0.2 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) DUF1451 PF07295.11 gi|88603973|ref|YP_504151.1| - 3e-08 33.8 1.9 3.6e-08 33.6 1.9 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain A2L_zn_ribbon PF08792.10 gi|88603973|ref|YP_504151.1| - 0.029 14.1 2.0 0.063 13.0 2.0 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-LYAR PF08790.11 gi|88603973|ref|YP_504151.1| - 0.036 14.0 0.4 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger HypA PF01155.19 gi|88603973|ref|YP_504151.1| - 0.081 12.9 2.6 0.09 12.8 2.6 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-trcl PF13451.6 gi|88603973|ref|YP_504151.1| - 0.43 10.5 6.6 2.6 8.0 6.6 2.0 1 1 0 1 1 1 0 Probable zinc-ribbon domain FMN_red PF03358.15 gi|88603974|ref|YP_504152.1| - 9.6e-22 77.4 0.0 1.3e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88603974|ref|YP_504152.1| - 1.2e-10 41.4 0.0 1.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold RadC PF04002.15 gi|88603975|ref|YP_504153.1| - 8.1e-39 132.3 0.1 1.1e-38 131.9 0.1 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 gi|88603975|ref|YP_504153.1| - 0.0024 17.6 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH PF00633.23 gi|88603975|ref|YP_504153.1| - 0.011 15.6 0.0 0.028 14.3 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Rubrerythrin PF02915.17 gi|88603976|ref|YP_504154.1| - 1.8e-19 70.5 8.0 3.8e-17 63.0 8.0 2.1 1 1 0 1 1 1 1 Rubrerythrin RecR PF02132.15 gi|88603976|ref|YP_504154.1| - 0.018 14.6 0.9 0.029 13.9 0.1 1.7 2 0 0 2 2 2 0 RecR protein zf-ribbon_3 PF13248.6 gi|88603976|ref|YP_504154.1| - 0.043 13.2 4.3 0.078 12.4 4.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPCC PF14206.6 gi|88603976|ref|YP_504154.1| - 0.094 12.5 1.0 0.22 11.4 1.0 1.6 1 0 0 1 1 1 0 Cysteine-rich CPCC zf_CopZ PF18423.1 gi|88603976|ref|YP_504154.1| - 0.42 10.6 2.6 1.8 8.6 0.2 2.3 2 0 0 2 2 2 0 Zinc binding domain Desulfoferrod_N PF06397.12 gi|88603976|ref|YP_504154.1| - 0.42 10.3 3.5 1.6 8.4 3.4 1.9 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|88603976|ref|YP_504154.1| - 2 8.0 5.0 4 7.0 0.3 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-C2H2_12 PF18112.1 gi|88603976|ref|YP_504154.1| - 2.9 8.5 4.6 35 5.0 0.5 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DNA_ligase_ZBD PF03119.16 gi|88603976|ref|YP_504154.1| - 4 7.6 6.6 11 6.2 1.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PAS_4 PF08448.10 gi|88603977|ref|YP_504155.1| - 2.2e-13 50.4 0.0 2.5e-07 30.9 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88603977|ref|YP_504155.1| - 8.9e-13 48.4 0.7 1.5e-07 31.6 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|88603977|ref|YP_504155.1| - 1.7e-12 47.3 0.0 4.2e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|88603977|ref|YP_504155.1| - 3.9e-07 29.9 0.0 7.2e-05 22.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|88603977|ref|YP_504155.1| - 1.4e-06 28.5 0.0 1.1e-05 25.7 0.0 2.2 2 0 0 2 2 2 1 PAS fold HTH_IclR PF09339.10 gi|88603977|ref|YP_504155.1| - 0.022 14.5 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_26 PF13443.6 gi|88603977|ref|YP_504155.1| - 0.05 14.0 0.1 0.43 11.0 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HEAT_2 PF13646.6 gi|88603978|ref|YP_504156.1| - 3.1e-25 88.4 0.0 3.4e-17 62.6 0.0 1.9 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|88603978|ref|YP_504156.1| - 4.4e-11 42.4 0.1 0.0016 18.9 0.0 3.6 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|88603978|ref|YP_504156.1| - 2.4e-10 39.7 0.1 7.4e-05 22.7 0.0 4.0 4 1 0 4 4 4 2 HEAT repeat Arm PF00514.23 gi|88603978|ref|YP_504156.1| - 6.4e-07 29.2 0.0 7.2e-06 25.9 0.0 2.3 2 0 0 2 2 2 1 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.7 gi|88603978|ref|YP_504156.1| - 4.3e-05 24.0 0.1 0.00062 20.3 0.0 2.0 1 1 1 2 2 2 1 Vacuolar 14 Fab1-binding region HEAT_EZ PF13513.6 gi|88603978|ref|YP_504156.1| - 0.00047 20.6 0.0 0.0021 18.6 0.0 2.2 2 1 1 3 3 3 1 HEAT-like repeat PAS_4 PF08448.10 gi|88603979|ref|YP_504157.1| - 0.043 14.1 0.0 0.059 13.6 0.0 1.3 1 0 0 1 1 1 0 PAS fold PAS PF00989.25 gi|88603979|ref|YP_504157.1| - 0.061 13.3 0.0 0.099 12.7 0.0 1.5 1 0 0 1 1 1 0 PAS fold HEAT_2 PF13646.6 gi|88603980|ref|YP_504158.1| - 7.5e-28 96.8 0.1 1.1e-19 70.6 0.0 1.8 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|88603980|ref|YP_504158.1| - 3.4e-13 48.9 0.1 0.00032 21.1 0.0 3.6 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|88603980|ref|YP_504158.1| - 1.7e-11 43.3 0.0 1.5e-05 24.8 0.0 3.0 3 0 0 3 3 3 2 HEAT repeat Vac14_Fab1_bd PF12755.7 gi|88603980|ref|YP_504158.1| - 2.7e-06 27.9 0.0 0.014 16.0 0.0 2.3 1 1 1 2 2 2 2 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|88603980|ref|YP_504158.1| - 0.00059 19.8 0.0 0.0014 18.6 0.0 1.7 1 1 0 1 1 1 1 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|88603980|ref|YP_504158.1| - 0.0016 18.9 0.2 0.02 15.4 0.1 2.4 2 1 0 2 2 2 1 HEAT-like repeat Vitellogenin_N PF01347.22 gi|88603980|ref|YP_504158.1| - 0.0041 15.6 0.0 0.0047 15.4 0.0 1.1 1 0 0 1 1 1 1 Lipoprotein amino terminal region DUF2019 PF09450.10 gi|88603980|ref|YP_504158.1| - 0.031 14.2 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2019) Cnd1 PF12717.7 gi|88603980|ref|YP_504158.1| - 0.031 14.3 0.0 0.21 11.6 0.0 2.0 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 YAcAr PF10686.9 gi|88603981|ref|YP_504159.1| - 3.6e-14 52.5 0.0 4.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 YspA, cpYpsA-related SLOG family DNA_processg_A PF02481.15 gi|88603981|ref|YP_504159.1| - 0.0049 16.1 0.0 0.0058 15.9 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A YAcAr PF10686.9 gi|88603982|ref|YP_504160.1| - 1.3e-12 47.5 0.0 1.8e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 YspA, cpYpsA-related SLOG family DNA_processg_A PF02481.15 gi|88603982|ref|YP_504160.1| - 0.056 12.7 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 DNA recombination-mediator protein A YAcAr PF10686.9 gi|88603984|ref|YP_504162.1| - 5.5e-11 42.3 0.0 8.2e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 YspA, cpYpsA-related SLOG family DNA_processg_A PF02481.15 gi|88603984|ref|YP_504162.1| - 0.023 14.0 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 DNA recombination-mediator protein A Organ_specific PF10950.8 gi|88603984|ref|YP_504162.1| - 0.088 13.5 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Organ specific protein Response_reg PF00072.24 gi|88603985|ref|YP_504163.1| - 3.1e-29 101.4 0.0 7.2e-29 100.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Goodbye PF17109.5 gi|88603985|ref|YP_504163.1| - 0.071 13.6 0.1 0.16 12.4 0.1 1.6 1 0 0 1 1 1 0 fungal STAND N-terminal Goodbye domain COG5 PF10392.9 gi|88603985|ref|YP_504163.1| - 0.094 12.9 3.9 0.17 12.0 3.9 1.4 1 0 0 1 1 1 0 Golgi transport complex subunit 5 PIH1 PF08190.12 gi|88603985|ref|YP_504163.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 PIH1 N-terminal domain PilJ PF13675.6 gi|88603985|ref|YP_504163.1| - 0.14 12.2 1.4 0.32 11.0 1.4 1.5 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF3450 PF11932.8 gi|88603985|ref|YP_504163.1| - 0.32 10.3 4.2 0.52 9.6 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|88603985|ref|YP_504163.1| - 1.3 9.5 8.9 5.9 7.4 8.9 2.2 1 1 0 1 1 1 0 Cell division protein ZapB PAS_9 PF13426.7 gi|88603986|ref|YP_504164.1| - 5.3e-50 168.0 0.8 2.2e-10 40.7 0.0 5.8 5 1 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|88603986|ref|YP_504164.1| - 1.6e-43 146.8 0.0 2.2e-17 63.1 0.0 6.0 6 0 0 6 6 6 3 PAS fold PAS PF00989.25 gi|88603986|ref|YP_504164.1| - 1e-40 138.3 1.0 8.9e-14 51.5 0.0 6.3 6 0 0 6 6 6 4 PAS fold PAS_4 PF08448.10 gi|88603986|ref|YP_504164.1| - 1.1e-37 128.6 0.0 3e-10 40.3 0.0 6.5 5 2 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|88603986|ref|YP_504164.1| - 3.4e-25 87.6 0.1 3.9e-07 29.9 0.0 5.6 5 0 0 5 5 5 4 PAS domain PAS_11 PF14598.6 gi|88603986|ref|YP_504164.1| - 9.4e-07 29.0 0.0 9.2e-05 22.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain HTH_IclR PF09339.10 gi|88603986|ref|YP_504164.1| - 0.00015 21.5 0.0 0.00034 20.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain GAF PF01590.26 gi|88603986|ref|YP_504164.1| - 0.00036 21.2 0.0 0.0022 18.6 0.0 2.4 2 0 0 2 2 2 1 GAF domain SpoVT_C PF15714.5 gi|88603986|ref|YP_504164.1| - 0.00044 20.3 0.1 0.059 13.4 0.0 3.3 3 0 0 3 3 3 1 Stage V sporulation protein T C-terminal, transcription factor GAF_2 PF13185.6 gi|88603986|ref|YP_504164.1| - 0.0016 18.8 0.0 0.028 14.7 0.0 2.6 2 1 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|88603986|ref|YP_504164.1| - 0.0057 16.8 0.1 4.1 7.6 0.0 4.1 4 1 0 4 4 3 1 PAS fold PAS_10 PF13596.6 gi|88603986|ref|YP_504164.1| - 0.0062 17.1 0.1 3.6 8.2 0.0 4.0 4 0 0 4 4 3 1 PAS domain MLTR_LBD PF17765.1 gi|88603986|ref|YP_504164.1| - 0.011 15.8 0.0 0.032 14.4 0.0 1.7 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain DUF977 PF06163.11 gi|88603986|ref|YP_504164.1| - 0.017 15.1 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) CH PF00307.31 gi|88603986|ref|YP_504164.1| - 0.026 14.7 0.0 0.057 13.6 0.0 1.5 1 0 0 1 1 1 0 Calponin homology (CH) domain DUF5611 PF18446.1 gi|88603986|ref|YP_504164.1| - 0.032 15.1 2.0 0.29 12.0 0.0 3.3 3 1 1 4 4 2 0 Domain of unknown function (DUF5611) HTH_24 PF13412.6 gi|88603986|ref|YP_504164.1| - 0.034 13.7 0.0 0.12 12.0 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|88603986|ref|YP_504164.1| - 0.042 13.7 0.0 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88603986|ref|YP_504164.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family FeoC PF09012.10 gi|88603986|ref|YP_504164.1| - 0.16 12.1 0.1 0.42 10.7 0.1 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator Hemerythrin PF01814.23 gi|88603988|ref|YP_504166.1| - 7.9e-13 49.2 0.7 9e-13 49.0 0.7 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain CHIPS PF11434.8 gi|88603988|ref|YP_504166.1| - 0.029 14.2 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Chemotaxis-inhibiting protein CHIPS Acetyltransf_3 PF13302.7 gi|88603989|ref|YP_504167.1| - 3.8e-14 53.5 0.0 4.1e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88603989|ref|YP_504167.1| - 2.8e-08 34.0 0.0 3.5e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family dCache_1 PF02743.18 gi|88603990|ref|YP_504168.1| - 1.2e-12 48.2 0.1 1.5e-12 47.9 0.1 1.1 1 0 0 1 1 1 1 Cache domain RecC_C PF17946.1 gi|88603990|ref|YP_504168.1| - 0.17 11.6 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 RecC C-terminal domain TPR_1 PF00515.28 gi|88603991|ref|YP_504169.1| - 7.5e-42 139.5 15.7 5.4e-09 35.5 0.2 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88603991|ref|YP_504169.1| - 1e-41 137.7 16.4 3.1e-08 33.1 4.1 6.1 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603991|ref|YP_504169.1| - 1.3e-33 114.4 13.8 9.8e-10 38.0 2.7 6.0 2 2 4 6 6 6 5 TPR repeat TPR_8 PF13181.6 gi|88603991|ref|YP_504169.1| - 3e-33 111.2 11.5 1.3e-06 28.2 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88603991|ref|YP_504169.1| - 1.5e-28 99.1 1.9 4e-11 43.4 1.3 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88603991|ref|YP_504169.1| - 1.9e-26 92.1 16.8 4.4e-09 36.5 0.3 5.3 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88603991|ref|YP_504169.1| - 2.7e-24 83.8 14.0 2.2e-06 27.7 0.2 6.4 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88603991|ref|YP_504169.1| - 7.8e-24 84.0 19.4 6.6e-07 29.7 1.0 4.4 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88603991|ref|YP_504169.1| - 1.8e-23 80.8 12.1 0.00012 21.8 0.0 6.0 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603991|ref|YP_504169.1| - 1.3e-21 75.5 8.1 2.5e-05 24.7 0.6 6.1 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88603991|ref|YP_504169.1| - 4.9e-20 70.8 19.7 5.6e-05 22.9 0.6 6.5 5 1 2 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88603991|ref|YP_504169.1| - 3.1e-12 46.3 10.8 0.0016 19.0 1.7 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|88603991|ref|YP_504169.1| - 2.5e-11 43.3 2.9 2e-05 23.9 0.0 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603991|ref|YP_504169.1| - 2.9e-11 43.4 8.9 5.7e-06 26.5 2.5 3.1 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88603991|ref|YP_504169.1| - 5.3e-10 39.3 5.6 0.00015 21.8 0.1 3.5 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88603991|ref|YP_504169.1| - 1.8e-07 31.1 4.7 3.1 8.7 0.1 5.9 6 0 0 6 6 5 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88603991|ref|YP_504169.1| - 8.7e-06 25.7 10.6 0.072 13.2 2.6 5.0 5 0 0 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|88603991|ref|YP_504169.1| - 1.5e-05 24.1 2.8 0.0016 17.5 1.3 2.9 1 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TPR_21 PF09976.9 gi|88603991|ref|YP_504169.1| - 2.1e-05 24.3 5.0 0.057 13.1 0.8 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat-like domain MIT PF04212.18 gi|88603991|ref|YP_504169.1| - 2.4e-05 24.3 11.8 0.88 9.7 0.0 5.6 5 1 0 5 5 5 1 MIT (microtubule interacting and transport) domain PPR PF01535.20 gi|88603991|ref|YP_504169.1| - 4.7e-05 23.4 3.0 0.081 13.2 0.0 4.3 4 0 0 4 4 4 1 PPR repeat TPR_3 PF07720.12 gi|88603991|ref|YP_504169.1| - 0.00038 20.4 9.5 1.7 8.7 5.2 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat BTAD PF03704.17 gi|88603991|ref|YP_504169.1| - 0.00092 19.7 6.7 0.43 11.0 0.6 3.0 2 1 1 3 3 3 2 Bacterial transcriptional activator domain RPN7 PF10602.9 gi|88603991|ref|YP_504169.1| - 0.0011 18.7 0.6 0.023 14.4 0.4 2.9 2 1 1 3 3 3 1 26S proteasome subunit RPN7 Coatomer_E PF04733.14 gi|88603991|ref|YP_504169.1| - 0.0023 17.4 1.0 0.36 10.2 0.0 3.0 2 1 1 3 3 3 1 Coatomer epsilon subunit Paf67 PF10255.9 gi|88603991|ref|YP_504169.1| - 0.0065 15.5 2.4 0.19 10.7 1.3 2.3 1 1 1 2 2 2 1 RNA polymerase I-associated factor PAF67 SRP_TPR_like PF17004.5 gi|88603991|ref|YP_504169.1| - 0.01 15.9 5.0 0.094 12.7 3.9 2.2 1 1 1 2 2 2 1 Putative TPR-like repeat PPR_2 PF13041.6 gi|88603991|ref|YP_504169.1| - 0.017 15.3 2.6 0.16 12.2 0.1 3.1 3 0 0 3 3 3 0 PPR repeat family DUF3856 PF12968.7 gi|88603991|ref|YP_504169.1| - 0.036 14.1 2.0 14 5.7 0.0 3.5 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) Rapsyn_N PF10579.9 gi|88603991|ref|YP_504169.1| - 0.08 13.0 0.2 0.28 11.3 0.2 1.9 1 0 0 1 1 1 0 Rapsyn N-terminal myristoylation and linker region ThiD2 PF17792.1 gi|88603991|ref|YP_504169.1| - 0.087 13.3 0.1 0.18 12.3 0.1 1.5 1 0 0 1 1 1 0 ThiD2 family HTH_Bact PF18768.1 gi|88603991|ref|YP_504169.1| - 0.12 12.0 1.0 23 4.7 0.1 3.3 2 1 1 3 3 3 0 Helix-turn-helix bacterial domain Acetyltransf_1 PF00583.25 gi|88603992|ref|YP_504170.1| - 1.8e-08 34.6 0.0 2.2e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|88603992|ref|YP_504170.1| - 1.6e-05 25.2 0.0 2.2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|88603992|ref|YP_504170.1| - 0.00044 19.9 0.0 0.00064 19.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|88603992|ref|YP_504170.1| - 0.0006 19.7 0.0 0.00082 19.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|88603992|ref|YP_504170.1| - 0.0017 18.3 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|88603992|ref|YP_504170.1| - 0.0017 18.4 0.0 0.0027 17.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2251 PF10008.9 gi|88603992|ref|YP_504170.1| - 0.058 13.5 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2251) Acetyltransf_3 PF13302.7 gi|88603992|ref|YP_504170.1| - 0.06 14.0 0.1 0.13 12.9 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|88603992|ref|YP_504170.1| - 0.12 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PEGA PF08308.11 gi|88603994|ref|YP_504172.1| - 3.8e-44 148.4 7.2 2.9e-16 59.1 0.3 3.2 3 0 0 3 3 3 3 PEGA domain CarboxypepD_reg PF13620.6 gi|88603994|ref|YP_504172.1| - 4.5e-07 30.0 4.2 0.025 14.8 0.1 4.5 4 2 1 5 5 5 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88603994|ref|YP_504172.1| - 0.00021 21.2 0.3 0.7 9.9 0.0 3.6 3 1 0 3 3 3 1 CarboxypepD_reg-like domain sCache_2 PF17200.4 gi|88603994|ref|YP_504172.1| - 0.019 14.8 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 Single Cache domain 2 DUF732 PF05305.14 gi|88603994|ref|YP_504172.1| - 0.061 13.7 0.5 0.38 11.2 0.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF732) DUF3821 PF12863.7 gi|88603995|ref|YP_504173.1| - 2.1e-51 174.8 0.0 7.1e-49 166.5 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF3821) SHOCT PF09851.9 gi|88603996|ref|YP_504174.1| - 4.2e-15 54.9 0.1 0.0045 16.7 0.0 5.1 4 0 0 4 4 4 4 Short C-terminal domain VbhA PF18495.1 gi|88603996|ref|YP_504174.1| - 7.8e-09 35.3 2.6 0.13 12.1 0.4 4.3 4 0 0 4 4 4 3 Antitoxin VbhA TPR_19 PF14559.6 gi|88603996|ref|YP_504174.1| - 1.6e-08 34.9 0.3 0.00013 22.4 0.1 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88603996|ref|YP_504174.1| - 9.9e-08 32.1 0.1 0.002 18.3 0.0 3.5 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_2 PF07719.17 gi|88603996|ref|YP_504174.1| - 1.2e-07 31.2 1.8 0.0053 16.8 0.1 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88603996|ref|YP_504174.1| - 1.6e-05 24.9 1.3 0.046 13.7 0.1 2.7 2 1 0 2 2 2 2 Putative TPR-like repeat YfdX PF10938.8 gi|88603996|ref|YP_504174.1| - 0.00021 21.3 0.3 0.5 10.3 0.0 3.2 3 0 0 3 3 3 2 YfdX protein DUF1707 PF08044.11 gi|88603996|ref|YP_504174.1| - 0.0003 20.8 0.0 0.69 10.0 0.0 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1707) TPR_1 PF00515.28 gi|88603996|ref|YP_504174.1| - 0.00078 19.2 5.8 0.029 14.2 0.1 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88603996|ref|YP_504174.1| - 0.0014 18.7 7.5 0.047 13.9 0.1 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88603996|ref|YP_504174.1| - 0.014 16.2 0.6 12 7.0 0.0 4.3 5 1 1 6 6 3 0 Tetratricopeptide repeat YppF PF14178.6 gi|88603996|ref|YP_504174.1| - 0.017 15.0 1.7 1.2 9.1 0.1 3.7 4 0 0 4 4 4 0 YppF-like protein TPR_16 PF13432.6 gi|88603996|ref|YP_504174.1| - 0.021 15.5 0.0 0.65 10.7 0.0 3.0 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88603996|ref|YP_504174.1| - 0.024 14.3 2.3 6 6.6 0.0 3.6 4 0 0 4 4 4 0 TPR repeat UvsW PF11637.8 gi|88603996|ref|YP_504174.1| - 0.077 13.1 0.2 16 5.7 0.1 2.6 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW PPR PF01535.20 gi|88603996|ref|YP_504174.1| - 0.21 11.9 0.8 23 5.5 0.0 3.1 3 0 0 3 3 2 0 PPR repeat DUF4366 PF14283.6 gi|88603997|ref|YP_504175.1| - 8.4e-05 22.6 1.2 0.00015 21.8 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) PKD PF00801.20 gi|88603997|ref|YP_504175.1| - 0.00015 21.6 0.5 0.00064 19.5 0.1 2.3 2 0 0 2 2 2 1 PKD domain Trypan_PARP PF05887.11 gi|88603997|ref|YP_504175.1| - 0.0029 17.6 13.9 0.18 11.8 3.1 2.6 2 0 0 2 2 2 2 Procyclic acidic repetitive protein (PARP) PKD PF00801.20 gi|88603998|ref|YP_504176.1| - 1.9e-24 85.3 13.5 4.8e-13 48.8 0.7 3.6 5 0 0 5 5 5 2 PKD domain PKD_3 PF16820.5 gi|88603998|ref|YP_504176.1| - 0.0073 16.0 0.4 0.24 11.2 0.1 2.5 2 0 0 2 2 2 1 PKD-like domain Pilin_N PF07790.11 gi|88603998|ref|YP_504176.1| - 0.023 15.6 1.7 0.051 14.5 1.7 1.6 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal MG2 PF01835.19 gi|88603998|ref|YP_504176.1| - 0.12 12.8 0.1 5.3 7.6 0.0 2.5 2 0 0 2 2 2 0 MG2 domain DUF2099 PF09872.9 gi|88604000|ref|YP_504178.1| - 1.7e-107 358.4 1.8 2e-107 358.2 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) DUF3220 PF11516.8 gi|88604000|ref|YP_504178.1| - 0.041 14.1 0.0 0.063 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3120) Gallidermin PF02052.15 gi|88604000|ref|YP_504178.1| - 0.12 12.8 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Gallidermin SBP_bac_3 PF00497.20 gi|88604001|ref|YP_504179.1| - 6.4e-17 61.7 0.0 1.1e-16 60.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 sCache_2 PF17200.4 gi|88604001|ref|YP_504179.1| - 3.4e-11 43.2 0.1 6.6e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 gi|88604001|ref|YP_504179.1| - 5.6e-09 35.6 0.1 1.5e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 Cache domain ATP-synt_D PF01813.17 gi|88604002|ref|YP_504180.1| - 1.7e-40 139.0 3.0 1.9e-40 138.8 3.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Ax_dynein_light PF10211.9 gi|88604002|ref|YP_504180.1| - 0.021 14.7 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain BLOC1_2 PF10046.9 gi|88604002|ref|YP_504180.1| - 0.047 14.0 0.2 0.2 11.9 0.1 2.1 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 KASH_CCD PF14662.6 gi|88604002|ref|YP_504180.1| - 0.064 13.1 0.3 5.5 6.8 0.0 2.1 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH vATP-synt_AC39 PF01992.16 gi|88604003|ref|YP_504181.1| - 2.3e-67 227.9 0.0 2.6e-67 227.7 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit PP2C_2 PF13672.6 gi|88604004|ref|YP_504182.1| - 1.6e-12 47.6 0.0 2e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|88604004|ref|YP_504182.1| - 1.7e-06 27.9 0.0 4.6e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|88604004|ref|YP_504182.1| - 7.9e-05 22.6 0.1 0.00024 21.1 0.1 1.8 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Ion_trans PF00520.31 gi|88604007|ref|YP_504185.1| - 5e-35 120.9 23.4 6.3e-35 120.6 23.4 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|88604007|ref|YP_504185.1| - 3.1e-14 52.7 5.2 3.1e-14 52.7 5.2 2.7 3 0 0 3 3 3 1 Ion channel SHOCT PF09851.9 gi|88604007|ref|YP_504185.1| - 7e-08 32.0 5.3 7e-08 32.0 5.3 1.6 2 0 0 2 2 2 1 Short C-terminal domain IRK PF01007.20 gi|88604007|ref|YP_504185.1| - 0.013 15.3 0.9 0.013 15.3 0.9 2.5 2 2 1 3 3 3 0 Inward rectifier potassium channel transmembrane domain GvpG PF05120.12 gi|88604007|ref|YP_504185.1| - 0.3 11.1 1.3 0.44 10.6 1.3 1.3 1 0 0 1 1 1 0 Gas vesicle protein G Smim3 PF17307.2 gi|88604007|ref|YP_504185.1| - 1.5 8.4 0.0 1.5 8.4 0.0 2.8 3 0 0 3 3 3 0 Small integral membrane protein 3 Lactamase_B PF00753.27 gi|88604008|ref|YP_504186.1| - 3.9e-17 62.9 1.8 5.1e-17 62.5 1.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88604008|ref|YP_504186.1| - 2.3e-11 43.6 0.1 2.9e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3006 PF11213.8 gi|88604009|ref|YP_504187.1| - 1.9e-11 44.0 2.3 2.1e-11 43.9 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) SBP_bac_3 PF00497.20 gi|88604010|ref|YP_504188.1| - 7.1e-23 81.2 0.0 7.8e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|88604010|ref|YP_504188.1| - 7e-07 29.4 0.0 1e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|88604010|ref|YP_504188.1| - 0.001 18.7 0.1 0.0024 17.5 0.1 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|88604010|ref|YP_504188.1| - 0.1 12.1 0.0 9.3 5.7 0.0 2.2 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system HATPase_c PF02518.26 gi|88604011|ref|YP_504189.1| - 0.00013 22.4 0.0 0.00028 21.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DivIC PF04977.15 gi|88604011|ref|YP_504189.1| - 0.014 15.2 8.3 0.13 12.1 5.3 2.9 2 1 0 2 2 2 0 Septum formation initiator kleA_kleC PF17383.2 gi|88604011|ref|YP_504189.1| - 0.11 12.9 2.8 0.2 12.0 2.8 1.4 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A DUF4381 PF14316.6 gi|88604011|ref|YP_504189.1| - 0.12 12.6 0.3 0.21 11.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) stn_TNFRSF12A PF12191.8 gi|88604011|ref|YP_504189.1| - 0.13 12.5 0.1 0.34 11.1 0.1 1.6 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain DUF5310 PF17237.2 gi|88604011|ref|YP_504189.1| - 0.15 11.9 0.5 0.44 10.5 0.5 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5310) LapA_dom PF06305.11 gi|88604011|ref|YP_504189.1| - 0.16 11.8 0.9 0.44 10.4 0.9 1.8 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain FapA PF03961.13 gi|88604011|ref|YP_504189.1| - 0.18 10.4 4.7 0.23 10.0 4.7 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A GTA_holin_3TM PF11351.8 gi|88604011|ref|YP_504189.1| - 4 8.0 6.6 1.9 9.0 0.6 2.7 3 0 0 3 3 3 0 Holin of 3TMs, for gene-transfer release DUF3552 PF12072.8 gi|88604011|ref|YP_504189.1| - 7.9 5.8 13.8 0.42 10.0 8.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) HicB_lk_antitox PF15919.5 gi|88604014|ref|YP_504192.1| - 9.8e-14 51.5 0.0 1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|88604015|ref|YP_504193.1| - 1.7e-17 63.2 0.1 2.1e-17 62.9 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF4277 PF14104.6 gi|88604016|ref|YP_504194.1| - 2.3e-40 137.3 0.0 5e-40 136.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|88604016|ref|YP_504194.1| - 2.1e-11 43.9 0.0 1.5e-10 41.1 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|88604016|ref|YP_504194.1| - 0.11 12.2 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 DDE superfamily endonuclease DUF3387 PF11867.8 gi|88604017|ref|YP_504195.1| - 3.1e-118 395.0 2.7 5.2e-118 394.2 2.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) SWI2_SNF2 PF18766.1 gi|88604017|ref|YP_504195.1| - 2e-85 286.0 2.1 3.2e-85 285.4 0.1 2.1 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|88604017|ref|YP_504195.1| - 1.5e-43 149.1 2.8 2.7e-43 148.2 0.0 2.8 4 0 0 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|88604017|ref|YP_504195.1| - 3.1e-18 66.3 0.1 6.3e-17 62.1 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HSDR_N_2 PF13588.6 gi|88604017|ref|YP_504195.1| - 0.0025 17.8 0.0 0.0091 16.0 0.0 1.9 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) Fib_alpha PF08702.10 gi|88604017|ref|YP_504195.1| - 0.29 11.3 3.3 0.94 9.7 3.3 1.8 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CENP-O PF09496.10 gi|88604017|ref|YP_504195.1| - 1.2 9.0 4.9 0.44 10.5 1.6 1.8 2 0 0 2 2 2 0 Cenp-O kinetochore centromere component HATPase_c_4 PF13749.6 gi|88604018|ref|YP_504196.1| - 3.8e-23 81.4 0.0 7.8e-23 80.4 0.0 1.5 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|88604018|ref|YP_504196.1| - 1.1e-15 58.1 0.0 2.2e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain PadR PF03551.14 gi|88604018|ref|YP_504196.1| - 0.08 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|88604018|ref|YP_504196.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|88604018|ref|YP_504196.1| - 0.15 12.1 0.0 0.4 10.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix RVT_1 PF00078.27 gi|88604019|ref|YP_504197.1| - 1.2e-41 142.7 0.0 2.3e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88604019|ref|YP_504197.1| - 1.3e-29 102.3 1.2 2.7e-29 101.2 1.2 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88604019|ref|YP_504197.1| - 3.6e-24 84.6 9.5 1.1e-23 83.1 9.5 1.9 1 0 0 1 1 1 1 Group II intron, maturase-specific domain Rho_RNA_bind PF07497.12 gi|88604020|ref|YP_504198.1| - 0.095 12.6 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Methylase_S PF01420.19 gi|88604020|ref|YP_504198.1| - 0.11 12.8 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Type I restriction modification DNA specificity domain YhcG_C PF06250.11 gi|88604022|ref|YP_504200.1| - 8.1e-51 171.9 0.2 1.2e-50 171.3 0.2 1.2 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|88604022|ref|YP_504200.1| - 2.2e-25 89.4 0.1 7e-25 87.8 0.0 1.8 2 0 0 2 2 2 1 DUF1016 N-terminal domain HSDR_N_2 PF13588.6 gi|88604022|ref|YP_504200.1| - 0.0074 16.3 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.6 gi|88604022|ref|YP_504200.1| - 0.081 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily NucS PF01939.16 gi|88604022|ref|YP_504200.1| - 0.16 11.3 0.1 0.47 9.8 0.0 1.7 1 1 1 2 2 2 0 Endonuclease NucS YhcG_C PF06250.11 gi|88604023|ref|YP_504201.1| - 9.8e-50 168.4 0.0 1.6e-49 167.7 0.0 1.3 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|88604023|ref|YP_504201.1| - 9.5e-40 135.9 0.1 1.4e-39 135.4 0.1 1.3 1 0 0 1 1 1 1 DUF1016 N-terminal domain HTH_ParB PF17762.1 gi|88604023|ref|YP_504201.1| - 0.028 14.2 0.0 0.079 12.8 0.0 1.8 1 0 0 1 1 1 0 HTH domain found in ParB protein Bromo_TP_like PF17027.5 gi|88604023|ref|YP_504201.1| - 0.057 13.6 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Histone-fold protein N6_Mtase PF02384.16 gi|88604024|ref|YP_504202.1| - 2.6e-115 385.0 0.0 3.5e-115 384.6 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|88604024|ref|YP_504202.1| - 6.2e-25 88.4 0.3 1.5e-24 87.2 0.3 1.7 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|88604024|ref|YP_504202.1| - 0.0067 16.1 0.4 0.098 12.3 0.4 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|88604024|ref|YP_504202.1| - 0.0072 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 RRNA methyltransferase AviRa MTS PF05175.14 gi|88604024|ref|YP_504202.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|88604024|ref|YP_504202.1| - 0.055 13.0 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase EVE PF01878.18 gi|88604025|ref|YP_504203.1| - 2.6e-19 69.7 0.0 3e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 EVE domain TPR_1 PF00515.28 gi|88604026|ref|YP_504204.1| - 7e-44 145.9 25.8 4.3e-13 48.5 6.0 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88604026|ref|YP_504204.1| - 9e-38 125.4 20.7 2.2e-10 39.8 5.2 6.1 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604026|ref|YP_504204.1| - 2.7e-29 101.5 3.9 2.8e-14 53.5 0.8 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88604026|ref|YP_504204.1| - 9.8e-28 94.0 26.8 2.2e-08 33.6 4.1 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604026|ref|YP_504204.1| - 1.6e-21 75.7 33.2 4e-08 32.8 7.7 5.6 3 2 3 6 6 5 5 TPR repeat TPR_14 PF13428.6 gi|88604026|ref|YP_504204.1| - 1.8e-19 68.8 2.2 0.0019 18.8 0.1 5.9 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604026|ref|YP_504204.1| - 4.2e-19 67.5 18.2 8.9e-05 22.6 0.2 6.5 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604026|ref|YP_504204.1| - 4.4e-19 67.0 7.5 0.00095 19.0 0.1 5.4 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604026|ref|YP_504204.1| - 4.7e-19 68.5 11.6 4e-10 39.8 4.1 4.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604026|ref|YP_504204.1| - 3e-17 62.9 7.8 9.8e-10 38.8 2.2 3.6 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604026|ref|YP_504204.1| - 5.4e-17 61.2 11.1 2.2e-05 24.8 0.1 6.0 5 1 1 6 6 6 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604026|ref|YP_504204.1| - 7.1e-13 48.6 22.0 4e-06 27.0 6.9 3.4 2 2 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|88604026|ref|YP_504204.1| - 1.4e-12 47.1 7.9 0.004 17.0 0.0 5.8 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88604026|ref|YP_504204.1| - 4e-12 46.1 0.0 6.8e-05 22.9 0.1 4.0 1 1 4 5 5 5 2 Tetratricopeptide repeat MIT PF04212.18 gi|88604026|ref|YP_504204.1| - 7.3e-08 32.4 16.8 0.15 12.1 0.2 5.2 3 2 2 6 6 6 3 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|88604026|ref|YP_504204.1| - 4.9e-07 29.9 1.7 0.0089 16.1 0.4 3.8 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|88604026|ref|YP_504204.1| - 1.7e-05 24.2 4.7 0.049 12.8 4.9 2.9 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88604026|ref|YP_504204.1| - 0.0001 22.1 11.3 0.026 14.3 1.3 3.6 2 2 2 4 4 4 2 Tetratricopeptide repeat-like domain TOM20_plant PF06552.12 gi|88604026|ref|YP_504204.1| - 0.00017 21.4 2.5 0.15 11.8 0.1 2.5 1 1 0 2 2 2 2 Plant specific mitochondrial import receptor subunit TOM20 Fis1_TPR_C PF14853.6 gi|88604026|ref|YP_504204.1| - 0.00022 21.3 6.7 0.099 12.7 1.2 4.2 3 1 1 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat Rapsyn_N PF10579.9 gi|88604026|ref|YP_504204.1| - 0.00079 19.5 0.5 2.7 8.1 0.0 3.7 3 2 1 4 4 3 1 Rapsyn N-terminal myristoylation and linker region RPN7 PF10602.9 gi|88604026|ref|YP_504204.1| - 0.002 17.9 6.1 0.3 10.8 3.4 3.5 1 1 2 3 3 3 1 26S proteasome subunit RPN7 BTAD PF03704.17 gi|88604026|ref|YP_504204.1| - 0.0026 18.2 0.4 0.45 11.0 0.0 3.2 3 1 1 4 4 4 1 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|88604026|ref|YP_504204.1| - 0.0029 16.6 11.3 0.3 9.9 0.1 2.8 1 1 1 3 3 3 2 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|88604026|ref|YP_504204.1| - 0.021 14.8 22.0 2.7 8.1 0.1 6.4 5 2 0 5 5 5 0 Tetratricopeptide repeat PPR PF01535.20 gi|88604026|ref|YP_504204.1| - 0.064 13.5 1.3 6.8 7.2 0.0 3.8 4 0 0 4 4 3 0 PPR repeat SNAP PF14938.6 gi|88604026|ref|YP_504204.1| - 0.077 12.4 13.5 0.36 10.2 11.2 2.7 1 1 2 3 3 3 0 Soluble NSF attachment protein, SNAP TPR_4 PF07721.14 gi|88604026|ref|YP_504204.1| - 0.17 12.6 0.0 1.2 9.9 0.0 2.4 3 0 0 3 3 2 0 Tetratricopeptide repeat YfiO PF13525.6 gi|88604026|ref|YP_504204.1| - 0.23 11.2 10.4 0.27 10.9 8.1 2.2 1 1 1 2 2 2 0 Outer membrane lipoprotein ANAPC5 PF12862.7 gi|88604026|ref|YP_504204.1| - 0.48 10.5 3.6 5.5 7.1 0.3 3.3 1 1 2 3 3 3 0 Anaphase-promoting complex subunit 5 SPO22 PF08631.10 gi|88604026|ref|YP_504204.1| - 0.48 9.9 6.3 6.4 6.2 1.3 3.2 3 0 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like DUF772 PF05598.11 gi|88604027|ref|YP_504205.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88604027|ref|YP_504205.1| - 9.6e-11 42.0 0.0 9.6e-11 42.0 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88604027|ref|YP_504205.1| - 0.18 11.5 0.0 0.18 11.5 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88604027|ref|YP_504205.1| - 0.32 11.4 4.4 0.51 10.7 4.4 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88604027|ref|YP_504205.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 NTP_transf_2 PF01909.23 gi|88604028|ref|YP_504206.1| - 1.1e-11 44.8 0.0 2.7e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88604028|ref|YP_504206.1| - 1e-10 41.5 0.0 2.6e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase PhoU PF01895.19 gi|88604028|ref|YP_504206.1| - 0.19 12.2 6.5 4.6 7.8 0.2 2.6 2 1 0 2 2 2 0 PhoU domain ABC2_membrane PF01061.24 gi|88604029|ref|YP_504207.1| - 1.1e-21 77.2 16.3 1.1e-21 77.2 16.3 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88604029|ref|YP_504207.1| - 3e-14 52.9 26.2 3e-14 52.9 26.2 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ATP1G1_PLM_MAT8 PF02038.16 gi|88604029|ref|YP_504207.1| - 0.098 12.1 0.8 0.34 10.4 0.0 2.3 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF4564 PF15169.6 gi|88604029|ref|YP_504207.1| - 4.3 7.0 5.7 0.24 11.1 0.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) HD PF01966.22 gi|88604031|ref|YP_504209.1| - 1.5e-10 41.3 0.2 2.4e-10 40.7 0.2 1.3 1 0 0 1 1 1 1 HD domain Amidohydro_2 PF04909.14 gi|88604031|ref|YP_504209.1| - 0.06 13.1 0.0 0.089 12.6 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase TFIIE_alpha PF02002.17 gi|88604032|ref|YP_504210.1| - 5.9e-19 67.9 3.1 1e-18 67.1 3.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|88604032|ref|YP_504210.1| - 3.5e-06 26.4 1.5 6.9e-06 25.5 1.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_9 PF08221.11 gi|88604032|ref|YP_504210.1| - 0.00082 19.4 0.0 0.0015 18.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HypA PF01155.19 gi|88604032|ref|YP_504210.1| - 0.00088 19.3 0.2 0.0013 18.7 0.2 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Gin PF10764.9 gi|88604032|ref|YP_504210.1| - 0.0036 17.2 2.2 0.0085 16.0 1.0 2.4 2 1 0 2 2 1 1 Inhibitor of sigma-G Gin zf-UBR PF02207.20 gi|88604032|ref|YP_504210.1| - 0.0045 17.1 0.7 0.0069 16.5 0.7 1.3 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) IBR PF01485.21 gi|88604032|ref|YP_504210.1| - 0.0059 16.8 1.6 0.0099 16.1 1.6 1.3 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zinc-ribbon_6 PF10005.9 gi|88604032|ref|YP_504210.1| - 0.014 16.1 1.4 0.031 14.9 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|88604032|ref|YP_504210.1| - 0.018 15.0 1.1 0.04 13.9 0.5 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|88604032|ref|YP_504210.1| - 0.018 14.9 1.9 0.54 10.1 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf_UBZ PF18439.1 gi|88604032|ref|YP_504210.1| - 0.023 14.3 0.9 5.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|88604032|ref|YP_504210.1| - 0.031 14.3 0.6 0.096 12.8 0.6 1.9 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain A2L_zn_ribbon PF08792.10 gi|88604032|ref|YP_504210.1| - 0.051 13.3 3.7 2 8.3 0.4 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|88604032|ref|YP_504210.1| - 0.054 13.5 0.4 0.09 12.8 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|88604032|ref|YP_504210.1| - 0.056 13.4 0.2 0.1 12.5 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Desulfoferrod_N PF06397.12 gi|88604032|ref|YP_504210.1| - 0.1 12.2 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain PhnA_Zn_Ribbon PF08274.12 gi|88604032|ref|YP_504210.1| - 0.1 12.5 3.6 1.7 8.7 2.7 2.5 1 1 1 2 2 2 0 PhnA Zinc-Ribbon TackOD1 PF18551.1 gi|88604032|ref|YP_504210.1| - 0.12 12.0 3.2 0.11 12.1 1.5 1.7 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 C1_2 PF03107.16 gi|88604032|ref|YP_504210.1| - 0.13 12.6 1.2 0.25 11.7 1.2 1.5 1 0 0 1 1 1 0 C1 domain DUF3725 PF12523.8 gi|88604032|ref|YP_504210.1| - 0.13 12.6 4.6 0.3 11.4 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3725) Ribosomal_S27e PF01667.17 gi|88604032|ref|YP_504210.1| - 0.15 11.8 2.6 0.38 10.5 2.4 1.7 1 1 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|88604032|ref|YP_504210.1| - 0.16 11.4 3.4 0.51 9.8 3.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HTH_IclR PF09339.10 gi|88604032|ref|YP_504210.1| - 0.17 11.7 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Auto_anti-p27 PF06677.12 gi|88604032|ref|YP_504210.1| - 0.22 11.7 1.1 0.38 11.0 1.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.11 gi|88604032|ref|YP_504210.1| - 0.42 10.2 2.8 0.64 9.6 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_10 PF10058.9 gi|88604032|ref|YP_504210.1| - 0.46 10.2 3.1 5.6 6.8 0.6 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HYPF PF07503.12 gi|88604032|ref|YP_504210.1| - 4.3 7.2 6.7 3.2 7.6 2.0 2.6 2 1 0 2 2 2 0 HypF finger ATP-grasp_3 PF02655.14 gi|88604033|ref|YP_504211.1| - 2.7e-26 92.6 0.0 4e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|88604033|ref|YP_504211.1| - 2.4e-06 27.3 0.0 4.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|88604033|ref|YP_504211.1| - 0.00093 18.8 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|88604033|ref|YP_504211.1| - 0.0032 17.0 0.0 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|88604033|ref|YP_504211.1| - 0.038 13.3 0.0 0.079 12.2 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Trm56 PF01994.16 gi|88604034|ref|YP_504212.1| - 3.3e-46 156.1 0.0 4e-46 155.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|88604034|ref|YP_504212.1| - 0.02 14.3 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP SIMPL PF04402.14 gi|88604036|ref|YP_504214.1| - 2e-46 159.0 7.1 2.3e-46 158.8 7.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Chi-conotoxin PF16981.5 gi|88604036|ref|YP_504214.1| - 0.18 12.1 0.1 0.51 10.6 0.1 1.8 1 0 0 1 1 1 0 chi-Conotoxin or t superfamily Na_H_Exchanger PF00999.21 gi|88604038|ref|YP_504216.1| - 1.4e-65 221.6 57.6 2e-65 221.1 57.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|88604038|ref|YP_504216.1| - 3.7e-21 75.6 0.3 7.3e-21 74.6 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|88604038|ref|YP_504216.1| - 1.8e-13 50.1 0.0 4.3e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain BATS PF06968.13 gi|88604038|ref|YP_504216.1| - 0.06 13.5 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain ROK PF00480.20 gi|88604039|ref|YP_504217.1| - 8.1e-51 173.2 0.0 1e-50 172.9 0.0 1.0 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.16 gi|88604039|ref|YP_504217.1| - 0.0033 16.5 0.0 0.0069 15.4 0.0 1.5 2 0 0 2 2 2 1 Glucokinase Hydant_A_N PF05378.13 gi|88604039|ref|YP_504217.1| - 0.12 12.1 0.0 0.42 10.3 0.0 1.7 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|88604039|ref|YP_504217.1| - 0.13 10.8 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 MutL protein Peptidase_C11 PF03415.14 gi|88604040|ref|YP_504218.1| - 7.2e-49 167.1 0.0 9.9e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 Clostripain family Peptidase_C11 PF03415.14 gi|88604041|ref|YP_504219.1| - 1.9e-43 149.2 0.0 2.2e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Clostripain family Gag_p17 PF00540.18 gi|88604041|ref|YP_504219.1| - 0.033 14.2 0.0 0.086 12.8 0.0 1.6 2 0 0 2 2 2 0 gag gene protein p17 (matrix protein) TPR_1 PF00515.28 gi|88604042|ref|YP_504220.1| - 3.3e-98 317.9 41.7 6.5e-10 38.4 2.5 14.8 15 0 0 15 15 15 13 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88604042|ref|YP_504220.1| - 9.6e-88 281.4 43.8 6.2e-08 32.2 1.3 15.0 15 0 0 15 15 15 12 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604042|ref|YP_504220.1| - 2.6e-65 215.8 59.5 2.6e-11 43.0 1.1 13.1 4 2 11 15 15 14 12 TPR repeat TPR_8 PF13181.6 gi|88604042|ref|YP_504220.1| - 1.4e-63 205.9 42.4 1.6e-05 24.7 0.0 15.0 15 0 0 15 15 15 10 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604042|ref|YP_504220.1| - 2.3e-60 200.9 43.2 1.5e-12 48.0 0.1 9.6 3 3 7 11 11 11 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604042|ref|YP_504220.1| - 2e-51 168.2 37.9 5e-07 30.0 0.1 14.7 2 1 13 15 15 15 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604042|ref|YP_504220.1| - 2.1e-51 168.6 44.1 5.2e-08 32.7 0.1 14.6 15 0 0 15 15 15 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604042|ref|YP_504220.1| - 1.4e-42 144.0 51.4 1.1e-09 38.6 0.1 9.3 5 3 3 9 9 9 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604042|ref|YP_504220.1| - 1.4e-38 131.0 42.7 2.1e-06 27.9 0.8 10.8 3 3 9 12 12 12 12 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604042|ref|YP_504220.1| - 1.5e-35 118.6 30.9 0.00061 19.6 0.0 13.4 13 1 1 14 14 14 9 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604042|ref|YP_504220.1| - 1e-30 105.7 22.5 4.6e-08 33.2 2.6 6.6 4 1 3 7 7 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|88604042|ref|YP_504220.1| - 1.9e-28 98.4 24.5 2.1e-05 24.6 0.0 8.3 5 3 3 8 8 7 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604042|ref|YP_504220.1| - 4.2e-21 74.1 39.1 0.038 14.6 0.0 13.8 15 0 0 15 15 14 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88604042|ref|YP_504220.1| - 2.7e-18 65.2 50.0 0.058 13.3 1.0 13.2 13 0 0 13 13 13 6 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88604042|ref|YP_504220.1| - 4.1e-12 46.2 40.1 0.0083 15.9 0.1 10.2 2 2 9 11 11 11 5 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|88604042|ref|YP_504220.1| - 2.7e-11 44.1 20.7 0.13 12.7 0.1 6.9 4 2 2 7 7 7 4 Bacterial transcriptional activator domain TPR_15 PF13429.6 gi|88604042|ref|YP_504220.1| - 3.5e-11 42.8 29.2 0.0005 19.4 0.7 5.3 2 2 3 5 5 5 4 Tetratricopeptide repeat NARP1 PF12569.8 gi|88604042|ref|YP_504220.1| - 3e-09 36.3 14.7 0.065 12.1 0.0 5.9 2 2 1 6 6 6 4 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|88604042|ref|YP_504220.1| - 4.4e-09 36.3 18.6 0.64 10.1 0.0 9.2 9 2 2 11 11 10 3 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|88604042|ref|YP_504220.1| - 5e-09 36.4 15.6 0.81 9.7 0.0 8.4 5 1 4 9 9 8 3 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|88604042|ref|YP_504220.1| - 7.2e-07 29.1 39.8 2.2 8.4 0.0 12.0 13 0 0 13 13 12 1 Tetratricopeptide repeat ChAPs PF09295.10 gi|88604042|ref|YP_504220.1| - 1.6e-06 27.4 10.7 0.051 12.6 0.0 4.6 4 1 1 5 5 5 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 gi|88604042|ref|YP_504220.1| - 2.1e-06 28.0 28.1 0.049 14.0 0.1 8.3 3 2 7 10 10 10 2 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|88604042|ref|YP_504220.1| - 2.9e-05 23.6 6.9 3 7.2 0.5 5.0 2 1 2 4 4 4 2 Coatomer epsilon subunit PPR PF01535.20 gi|88604042|ref|YP_504220.1| - 6.3e-05 23.0 3.4 29 5.2 0.0 7.4 8 0 0 8 8 6 0 PPR repeat TPR_4 PF07721.14 gi|88604042|ref|YP_504220.1| - 0.00014 22.2 17.8 7.6 7.5 0.7 9.1 9 0 0 9 9 9 0 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|88604042|ref|YP_504220.1| - 0.00015 21.6 10.7 1.2 8.9 0.4 6.1 2 2 2 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 Alkyl_sulf_dimr PF14863.6 gi|88604042|ref|YP_504220.1| - 0.00055 20.4 9.5 0.1 13.1 0.2 4.1 3 2 1 4 4 4 1 Alkyl sulfatase dimerisation PPTA PF01239.22 gi|88604042|ref|YP_504220.1| - 0.0073 16.0 1.2 2.9 7.7 0.1 4.6 4 0 0 4 4 4 1 Protein prenyltransferase alpha subunit repeat TruB_N PF01509.18 gi|88604042|ref|YP_504220.1| - 0.022 15.1 0.5 5.6 7.3 0.0 3.2 2 1 2 4 4 4 0 TruB family pseudouridylate synthase (N terminal domain) Rapsyn_N PF10579.9 gi|88604042|ref|YP_504220.1| - 0.025 14.7 0.4 10 6.3 0.0 4.4 4 2 1 5 5 4 0 Rapsyn N-terminal myristoylation and linker region RIF5_SNase_1 PF18187.1 gi|88604042|ref|YP_504220.1| - 0.17 11.6 0.1 3.6 7.3 0.0 2.8 3 0 0 3 3 3 0 TbRIF5 SNase domain 1 MIT PF04212.18 gi|88604042|ref|YP_504220.1| - 0.18 11.9 50.7 6.1 7.0 0.2 12.0 12 2 2 14 14 14 0 MIT (microtubule interacting and transport) domain DUF5344 PF17279.2 gi|88604042|ref|YP_504220.1| - 0.21 12.2 6.8 6.1 7.5 0.0 4.7 4 2 0 4 4 3 0 Family of unknown function (DUF5344) HTH_Bact PF18768.1 gi|88604042|ref|YP_504220.1| - 0.34 10.5 7.2 23 4.6 0.0 5.4 5 0 0 5 5 5 0 Helix-turn-helix bacterial domain SHNi-TPR PF10516.9 gi|88604042|ref|YP_504220.1| - 0.89 9.1 8.4 34 4.0 0.2 5.1 5 0 0 5 5 4 0 SHNi-TPR tRNA_NucTransf2 PF09249.11 gi|88604043|ref|YP_504221.1| - 3.6e-42 143.2 0.0 6.3e-42 142.4 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|88604043|ref|YP_504221.1| - 2.2e-08 34.2 0.0 6.7e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|88604043|ref|YP_504221.1| - 0.0097 16.1 0.0 0.019 15.1 0.0 1.5 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|88604044|ref|YP_504222.1| - 2.4e-27 95.0 0.0 7.5e-13 48.5 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|88604044|ref|YP_504222.1| - 3e-11 43.4 0.0 4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|88604044|ref|YP_504222.1| - 0.00011 22.2 0.0 0.00025 21.0 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Glutaredoxin PF00462.24 gi|88604045|ref|YP_504223.1| - 0.00058 20.0 0.1 0.00079 19.6 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin NRDD PF13597.6 gi|88604046|ref|YP_504224.1| - 3.7e-130 435.4 0.0 4.7e-130 435.0 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|88604046|ref|YP_504224.1| - 0.0071 16.9 0.1 0.015 15.9 0.1 1.4 1 0 0 1 1 1 1 ATP cone domain DUF2953 PF11167.8 gi|88604046|ref|YP_504224.1| - 0.22 11.6 0.5 0.55 10.3 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Sulfate_transp PF00916.20 gi|88604047|ref|YP_504225.1| - 1.2e-15 57.2 3.3 1.2e-15 57.2 3.3 1.1 1 0 0 1 1 1 1 Sulfate permease family Beta-lactamase PF00144.24 gi|88604048|ref|YP_504226.1| - 5.7e-53 180.3 0.0 7.6e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.8 gi|88604048|ref|YP_504226.1| - 3.2e-05 24.3 0.0 5.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3471) Peptidase_S11 PF00768.20 gi|88604048|ref|YP_504226.1| - 0.032 13.7 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase Methyltransf_25 PF13649.6 gi|88604049|ref|YP_504227.1| - 5e-20 72.0 0.0 7e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88604049|ref|YP_504227.1| - 4.9e-19 68.6 0.0 6.3e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|88604049|ref|YP_504227.1| - 9.5e-19 67.7 0.0 1.1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604049|ref|YP_504227.1| - 6.7e-18 65.1 0.0 9.2e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604049|ref|YP_504227.1| - 4.9e-14 52.9 0.0 6.7e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88604049|ref|YP_504227.1| - 1e-13 51.5 0.0 1.3e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88604049|ref|YP_504227.1| - 6.7e-12 45.6 0.4 9e-12 45.2 0.4 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|88604049|ref|YP_504227.1| - 2.5e-08 33.6 0.0 3.2e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|88604049|ref|YP_504227.1| - 8.1e-07 28.6 0.0 1.1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|88604049|ref|YP_504227.1| - 3e-06 26.9 0.0 9.9e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|88604049|ref|YP_504227.1| - 5.8e-05 22.8 0.0 8.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|88604049|ref|YP_504227.1| - 0.00024 21.1 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|88604049|ref|YP_504227.1| - 0.00031 20.3 0.1 0.00091 18.7 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|88604049|ref|YP_504227.1| - 0.00049 19.6 0.0 0.00062 19.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|88604049|ref|YP_504227.1| - 0.00053 19.1 0.0 0.00068 18.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|88604049|ref|YP_504227.1| - 0.0018 18.0 0.0 0.0023 17.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|88604049|ref|YP_504227.1| - 0.0053 16.9 0.0 0.0081 16.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_2 PF00891.18 gi|88604049|ref|YP_504227.1| - 0.019 14.3 0.1 0.49 9.6 0.0 1.8 1 1 1 2 2 2 0 O-methyltransferase domain NodS PF05401.11 gi|88604049|ref|YP_504227.1| - 0.021 14.4 0.0 0.027 14.1 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|88604049|ref|YP_504227.1| - 0.022 14.7 0.0 0.025 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|88604049|ref|YP_504227.1| - 0.024 14.0 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DRE2_N PF16803.5 gi|88604049|ref|YP_504227.1| - 0.085 13.1 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Fibrillarin PF01269.17 gi|88604049|ref|YP_504227.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Baculo_11_kDa PF06143.11 gi|88604049|ref|YP_504227.1| - 6.6 6.4 5.1 12 5.5 5.1 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family VTC PF09359.10 gi|88604050|ref|YP_504228.1| - 5.6e-16 58.8 2.0 1.5e-10 40.9 0.8 3.0 2 1 0 2 2 2 2 VTC domain DUF4956 PF16316.5 gi|88604051|ref|YP_504229.1| - 3.2e-58 196.2 7.7 3.6e-58 196.0 7.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4956) DUF2070 PF09843.9 gi|88604051|ref|YP_504229.1| - 0.15 10.3 7.5 0.19 10.0 7.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DDE_Tnp_IS66 PF03050.14 gi|88604052|ref|YP_504230.1| - 1.8e-33 116.2 2.1 8.7e-33 114.0 0.0 2.4 2 1 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|88604052|ref|YP_504230.1| - 7.8e-09 35.8 1.3 1.8e-08 34.7 1.3 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.6 gi|88604052|ref|YP_504230.1| - 0.013 16.1 1.1 0.031 14.9 0.4 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LUC7 PF03194.15 gi|88604052|ref|YP_504230.1| - 0.033 13.8 1.2 0.069 12.8 1.2 1.4 1 0 0 1 1 1 0 LUC7 N_terminus DDE_Tnp_IS240 PF13610.6 gi|88604052|ref|YP_504230.1| - 0.3 11.3 3.5 9.6 6.4 0.0 3.1 3 0 0 3 3 3 0 DDE domain Macoilin PF09726.9 gi|88604052|ref|YP_504230.1| - 0.37 9.3 4.2 0.53 8.8 4.2 1.2 1 0 0 1 1 1 0 Macoilin family PRKCSH-like PF12999.7 gi|88604052|ref|YP_504230.1| - 9.9 5.9 6.0 19 5.0 6.0 1.5 1 0 0 1 1 1 0 Glucosidase II beta subunit-like DUF2080 PF09853.9 gi|88604053|ref|YP_504231.1| - 1.6e-26 91.8 0.1 1.7e-26 91.7 0.1 1.0 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) DDE_Tnp_1 PF01609.21 gi|88604054|ref|YP_504232.1| - 5.7e-23 81.7 0.1 1.3e-22 80.5 0.0 1.6 2 0 0 2 2 2 1 Transposase DDE domain CotH PF08757.11 gi|88604055|ref|YP_504233.1| - 8.8e-61 206.2 5.1 5.3e-60 203.6 5.1 1.8 1 1 0 1 1 1 1 CotH kinase protein DUF2420 PF10336.9 gi|88604055|ref|YP_504233.1| - 0.062 13.3 0.3 0.21 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2420) DHHA1 PF02272.19 gi|88604056|ref|YP_504234.1| - 0.0018 18.7 0.2 0.0036 17.7 0.2 1.6 1 1 0 1 1 1 1 DHHA1 domain DUF2012 PF09430.10 gi|88604056|ref|YP_504234.1| - 0.077 13.1 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) LRR_6 PF13516.6 gi|88604056|ref|YP_504234.1| - 0.14 12.3 0.0 0.37 11.0 0.0 1.8 1 0 0 1 1 1 0 Leucine Rich repeat Pertussis_S2S3 PF02918.15 gi|88604057|ref|YP_504235.1| - 0.13 12.1 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Pertussis toxin, subunit 2 and 3, C-terminal domain tRNA-synt_1g PF09334.11 gi|88604058|ref|YP_504236.1| - 7.5e-151 502.3 0.2 9.3e-151 502.0 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|88604058|ref|YP_504236.1| - 7.5e-26 90.1 0.1 1.4e-25 89.2 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|88604058|ref|YP_504236.1| - 3.7e-16 58.5 0.2 1.4e-07 30.2 0.1 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|88604058|ref|YP_504236.1| - 8e-13 48.4 0.0 1e-08 34.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|88604058|ref|YP_504236.1| - 4.1e-10 39.8 0.0 8.9e-10 38.7 0.0 1.7 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|88604058|ref|YP_504236.1| - 0.095 11.6 0.0 2.9 6.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|88604058|ref|YP_504236.1| - 1.1 9.3 7.4 7.8 6.6 7.4 2.2 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|88604058|ref|YP_504236.1| - 6.9 6.7 7.1 3.3 7.8 3.5 2.1 1 1 1 2 2 2 0 zinc-ribbons HEAT_2 PF13646.6 gi|88604059|ref|YP_504237.1| - 1.4e-30 105.5 1.8 2.7e-16 59.7 0.1 2.0 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|88604059|ref|YP_504237.1| - 5.9e-20 69.7 0.0 6.3e-07 29.1 0.0 5.1 5 0 0 5 5 5 3 HEAT repeat HEAT_PBS PF03130.16 gi|88604059|ref|YP_504237.1| - 8.3e-19 66.3 1.3 0.00023 21.5 0.1 4.6 4 1 0 4 4 4 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|88604059|ref|YP_504237.1| - 2.1e-11 44.1 1.0 0.011 16.2 0.0 4.7 4 1 0 4 4 4 3 HEAT-like repeat Arm PF00514.23 gi|88604059|ref|YP_504237.1| - 3.7e-06 26.8 0.6 8.4 6.6 0.1 4.5 3 1 2 5 5 5 3 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.7 gi|88604059|ref|YP_504237.1| - 2.6e-05 24.7 0.0 0.26 11.9 0.0 2.9 2 1 1 3 3 3 2 Vacuolar 14 Fab1-binding region Nipped-B_C PF12830.7 gi|88604059|ref|YP_504237.1| - 0.00039 20.4 0.2 0.27 11.2 0.0 3.5 2 1 2 4 4 4 1 Sister chromatid cohesion C-terminus GTP_EFTU PF00009.27 gi|88604061|ref|YP_504239.1| - 4.2e-63 212.4 0.1 6.7e-63 211.8 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_II PF14492.6 gi|88604061|ref|YP_504239.1| - 6.1e-26 90.3 2.0 1.6e-25 89.0 0.2 2.5 3 0 0 3 3 3 1 Elongation Factor G, domain II EFG_IV PF03764.18 gi|88604061|ref|YP_504239.1| - 1.1e-24 86.5 0.6 4.6e-24 84.5 0.0 2.3 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|88604061|ref|YP_504239.1| - 1.6e-24 85.7 0.0 7.4e-24 83.6 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|88604061|ref|YP_504239.1| - 1.4e-15 57.4 2.7 3.7e-15 56.1 0.3 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|88604061|ref|YP_504239.1| - 0.0003 20.8 0.0 0.00072 19.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2888 PF11135.8 gi|88604061|ref|YP_504239.1| - 0.0043 17.0 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2888) RF3_C PF16658.5 gi|88604061|ref|YP_504239.1| - 0.061 13.1 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain Ribosomal_S7 PF00177.21 gi|88604062|ref|YP_504240.1| - 3.8e-38 130.5 3.6 4.6e-38 130.2 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF4536 PF15055.6 gi|88604062|ref|YP_504240.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4536) Ribosom_S12_S23 PF00164.25 gi|88604063|ref|YP_504241.1| - 1.6e-45 153.3 0.3 1.9e-45 153.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PTPS PF01242.19 gi|88604064|ref|YP_504242.1| - 6.5e-32 110.1 0.1 7.5e-32 109.9 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|88604065|ref|YP_504243.1| - 5.1e-14 53.0 0.1 7.8e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|88604065|ref|YP_504243.1| - 3.6e-12 46.5 0.0 6.2e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|88604065|ref|YP_504243.1| - 5.9e-09 36.3 0.0 8.3e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain CTP_transf_3 PF02348.19 gi|88604065|ref|YP_504243.1| - 0.094 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase QueC PF06508.13 gi|88604066|ref|YP_504244.1| - 2.4e-74 249.4 0.0 2.6e-74 249.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|88604066|ref|YP_504244.1| - 1.2e-06 28.4 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|88604066|ref|YP_504244.1| - 2e-06 27.5 0.0 4.8e-06 26.3 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|88604066|ref|YP_504244.1| - 1.4e-05 24.1 0.0 1.8e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|88604066|ref|YP_504244.1| - 0.00053 19.8 0.0 0.0045 16.8 0.0 2.0 2 0 0 2 2 2 1 PP-loop family NAD_synthase PF02540.17 gi|88604066|ref|YP_504244.1| - 0.001 18.3 0.1 0.0022 17.2 0.0 1.5 2 0 0 2 2 2 1 NAD synthase Arginosuc_synth PF00764.19 gi|88604066|ref|YP_504244.1| - 0.16 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase NUDIX PF00293.28 gi|88604067|ref|YP_504245.1| - 7e-14 52.0 0.1 8.9e-14 51.7 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain SH3_19 PF18597.1 gi|88604067|ref|YP_504245.1| - 0.051 13.4 0.1 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Myosin X N-terminal SH3 domain Hydrolase_4 PF12146.8 gi|88604068|ref|YP_504246.1| - 2.8e-12 46.4 0.1 3.7e-11 42.7 0.1 2.0 1 1 1 2 2 2 1 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|88604068|ref|YP_504246.1| - 0.0004 19.2 0.1 0.00065 18.5 0.1 1.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|88604068|ref|YP_504246.1| - 0.029 14.0 0.0 0.055 13.1 0.0 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|88604068|ref|YP_504246.1| - 0.19 12.3 2.5 0.43 11.2 2.4 1.5 1 1 1 2 2 2 0 Alpha/beta hydrolase family eRF1_2 PF03464.15 gi|88604069|ref|YP_504247.1| - 9.9e-37 126.2 0.0 1.7e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|88604069|ref|YP_504247.1| - 1.1e-30 106.4 0.0 3.8e-30 104.7 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|88604069|ref|YP_504247.1| - 1.4e-11 44.5 0.0 7.6e-11 42.1 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 1 baeRF_family10 PF18854.1 gi|88604069|ref|YP_504247.1| - 6.1e-11 42.7 0.0 9.8e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|88604069|ref|YP_504247.1| - 2.6e-10 40.7 0.0 5.1e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family12 PF18856.1 gi|88604069|ref|YP_504247.1| - 0.0062 17.1 0.1 0.019 15.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 zinc_ribbon_4 PF13717.6 gi|88604069|ref|YP_504247.1| - 0.021 14.7 1.0 0.45 10.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|88604069|ref|YP_504247.1| - 0.06 13.5 4.0 0.56 10.4 0.5 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|88604069|ref|YP_504247.1| - 0.1 13.0 0.1 8.5 6.8 0.0 2.6 3 0 0 3 3 3 0 Restriction alleviation protein Lar DRTGG PF07085.12 gi|88604069|ref|YP_504247.1| - 0.12 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 DRTGG domain HypA PF01155.19 gi|88604069|ref|YP_504247.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA tRNA-synt_1d PF00750.19 gi|88604070|ref|YP_504248.1| - 3.2e-32 111.8 0.0 5.1e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|88604070|ref|YP_504248.1| - 5.7e-30 103.9 0.4 1.8e-29 102.3 0.2 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|88604070|ref|YP_504248.1| - 3.5e-10 40.3 0.0 1e-09 38.9 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|88604070|ref|YP_504248.1| - 1.4e-06 27.5 0.0 0.035 13.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|88604070|ref|YP_504248.1| - 0.0028 16.5 0.1 0.071 11.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|88604070|ref|YP_504248.1| - 0.031 12.5 0.0 0.05 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) DIOX_N PF14226.6 gi|88604070|ref|YP_504248.1| - 0.04 14.7 0.0 0.085 13.6 0.0 1.5 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal tRNA-synt_1e PF01406.19 gi|88604070|ref|YP_504248.1| - 0.061 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Wyosine_form PF08608.12 gi|88604071|ref|YP_504249.1| - 6.3e-19 68.1 0.1 1.1e-18 67.4 0.1 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|88604071|ref|YP_504249.1| - 9.1e-17 61.9 0.0 1.5e-16 61.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88604071|ref|YP_504249.1| - 0.094 13.0 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1731 PF08338.11 gi|88604071|ref|YP_504249.1| - 0.13 12.1 0.1 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1731) tRNA-synt_2d PF01409.20 gi|88604072|ref|YP_504250.1| - 2.9e-52 177.6 0.0 1.8e-48 165.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|88604072|ref|YP_504250.1| - 5.5e-16 58.3 0.2 1.6e-15 56.9 0.2 1.9 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|88604072|ref|YP_504250.1| - 1.5e-08 34.3 0.0 6.3e-07 29.0 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|88604072|ref|YP_504250.1| - 0.0062 15.6 0.2 4.2 6.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) PKD PF00801.20 gi|88604073|ref|YP_504251.1| - 3.5e-84 276.7 73.8 3.9e-14 52.3 1.0 8.1 7 0 0 7 7 7 7 PKD domain PEGA PF08308.11 gi|88604073|ref|YP_504251.1| - 3.9e-34 116.3 20.1 8.4e-14 51.2 0.2 6.5 9 0 0 9 9 9 3 PEGA domain CarboxypepD_reg PF13620.6 gi|88604073|ref|YP_504251.1| - 1.9e-08 34.5 3.2 1.3e-05 25.4 0.1 8.3 9 0 0 9 9 9 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88604073|ref|YP_504251.1| - 3.6e-07 30.1 0.7 0.68 10.0 0.0 4.7 4 0 0 4 4 4 3 CarboxypepD_reg-like domain FeThRed_A PF02941.15 gi|88604073|ref|YP_504251.1| - 5.2e-06 26.5 0.0 8.8 6.6 0.0 6.1 7 0 0 7 7 7 1 Ferredoxin thioredoxin reductase variable alpha chain MG2 PF01835.19 gi|88604073|ref|YP_504251.1| - 7.3e-05 23.2 17.9 1.3 9.6 0.0 7.5 4 2 4 8 8 8 1 MG2 domain PKD_3 PF16820.5 gi|88604073|ref|YP_504251.1| - 8e-05 22.3 13.6 3.8 7.3 0.0 7.0 7 0 0 7 7 7 3 PKD-like domain Y_Y_Y PF07495.13 gi|88604073|ref|YP_504251.1| - 0.00023 21.1 19.0 1.3 9.1 0.1 7.8 8 0 0 8 8 8 2 Y_Y_Y domain DUF2012 PF09430.10 gi|88604073|ref|YP_504251.1| - 0.00067 19.8 0.0 0.047 13.8 0.0 3.4 2 1 0 3 3 3 1 Protein of unknown function (DUF2012) fn3_3 PF14686.6 gi|88604073|ref|YP_504251.1| - 0.0036 17.1 0.0 0.0036 17.1 0.0 8.2 9 0 0 9 9 9 1 Polysaccharide lyase family 4, domain II MBG PF17883.1 gi|88604073|ref|YP_504251.1| - 0.01 16.4 36.0 1.5 9.5 1.9 8.0 6 1 2 8 8 8 0 MBG domain DUF3324 PF11797.8 gi|88604073|ref|YP_504251.1| - 0.037 14.0 17.9 6.6 6.7 0.1 7.2 8 0 0 8 8 8 0 Protein of unknown function C-terminal (DUF3324) PUD PF03714.14 gi|88604073|ref|YP_504251.1| - 0.049 14.5 13.5 1.5 9.8 0.2 6.3 7 0 0 7 7 7 0 Bacterial pullanase-associated domain MarR PF01047.22 gi|88604074|ref|YP_504252.1| - 0.0087 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|88604074|ref|YP_504252.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|88604074|ref|YP_504252.1| - 0.047 13.9 0.1 0.087 13.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|88604074|ref|YP_504252.1| - 0.052 13.7 0.5 0.11 12.7 0.5 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Prim-Pol PF09250.11 gi|88604075|ref|YP_504253.1| - 1.6e-08 35.0 0.0 2.3e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal zf-CHC2 PF01807.20 gi|88604076|ref|YP_504254.1| - 0.0052 16.6 0.2 0.011 15.6 0.2 1.5 1 0 0 1 1 1 1 CHC2 zinc finger DUF2637 PF10935.8 gi|88604077|ref|YP_504255.1| - 8.6e-40 136.3 0.1 1.1e-39 135.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2637) HTH_24 PF13412.6 gi|88604077|ref|YP_504255.1| - 1e-08 34.6 0.0 7.5e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|88604077|ref|YP_504255.1| - 0.00099 18.9 0.0 0.039 13.8 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|88604077|ref|YP_504255.1| - 0.015 15.2 0.0 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|88604077|ref|YP_504255.1| - 0.04 13.9 0.0 0.64 10.0 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.10 gi|88604077|ref|YP_504255.1| - 0.04 13.7 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|88604077|ref|YP_504255.1| - 0.059 13.5 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|88604077|ref|YP_504255.1| - 0.14 11.7 0.1 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4131 PF13567.6 gi|88604077|ref|YP_504255.1| - 0.78 9.4 2.9 0.71 9.5 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) CdvA PF18822.1 gi|88604079|ref|YP_504257.1| - 0.006 16.4 19.2 0.11 12.3 6.0 2.2 1 1 1 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|88604079|ref|YP_504257.1| - 0.0082 15.9 12.0 0.023 14.4 1.0 3.5 3 0 0 3 3 3 2 Short C-terminal domain DUF2935 PF11155.8 gi|88604079|ref|YP_504257.1| - 0.022 15.1 5.4 0.07 13.5 1.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Cluap1 PF10234.9 gi|88604079|ref|YP_504257.1| - 0.045 13.2 17.7 0.036 13.5 3.6 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 GvpG PF05120.12 gi|88604079|ref|YP_504257.1| - 0.71 9.9 7.2 0.87 9.6 1.6 2.5 2 0 0 2 2 2 0 Gas vesicle protein G SOAR PF16533.5 gi|88604079|ref|YP_504257.1| - 0.74 9.8 6.8 1.3 9.0 3.9 2.6 2 1 1 3 3 3 0 STIM1 Orai1-activating region BST2 PF16716.5 gi|88604079|ref|YP_504257.1| - 3.6 8.2 11.3 2 9.1 3.3 2.7 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Myb_DNA-bind_4 PF13837.6 gi|88604079|ref|YP_504257.1| - 4.7 7.7 8.6 11 6.4 2.1 2.3 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain Rho_Binding PF08912.11 gi|88604079|ref|YP_504257.1| - 4.9 8.0 21.5 9.9 7.1 5.6 3.4 1 1 2 3 3 3 0 Rho Binding CdvA PF18822.1 gi|88604080|ref|YP_504258.1| - 0.006 16.4 19.2 0.11 12.3 6.0 2.2 1 1 1 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|88604080|ref|YP_504258.1| - 0.0082 15.9 12.0 0.023 14.4 1.0 3.5 3 0 0 3 3 3 2 Short C-terminal domain DUF2935 PF11155.8 gi|88604080|ref|YP_504258.1| - 0.022 15.1 5.4 0.07 13.5 1.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Cluap1 PF10234.9 gi|88604080|ref|YP_504258.1| - 0.045 13.2 17.7 0.036 13.5 3.6 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 GvpG PF05120.12 gi|88604080|ref|YP_504258.1| - 0.71 9.9 7.2 0.87 9.6 1.6 2.5 2 0 0 2 2 2 0 Gas vesicle protein G SOAR PF16533.5 gi|88604080|ref|YP_504258.1| - 0.74 9.8 6.8 1.3 9.0 3.9 2.6 2 1 1 3 3 3 0 STIM1 Orai1-activating region BST2 PF16716.5 gi|88604080|ref|YP_504258.1| - 3.6 8.2 11.3 2 9.1 3.3 2.7 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Myb_DNA-bind_4 PF13837.6 gi|88604080|ref|YP_504258.1| - 4.7 7.7 8.6 11 6.4 2.1 2.3 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain Rho_Binding PF08912.11 gi|88604080|ref|YP_504258.1| - 4.9 8.0 21.5 9.9 7.1 5.6 3.4 1 1 2 3 3 3 0 Rho Binding Hydrolase_6 PF13344.6 gi|88604081|ref|YP_504259.1| - 1.9e-23 82.5 0.0 6e-23 80.9 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|88604081|ref|YP_504259.1| - 1.4e-15 57.1 0.2 6.6e-15 54.9 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|88604081|ref|YP_504259.1| - 7e-11 42.8 0.7 1.9e-09 38.2 0.7 3.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|88604081|ref|YP_504259.1| - 7.4e-11 42.5 0.1 3.1e-07 30.6 0.0 2.7 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|88604081|ref|YP_504259.1| - 0.048 13.4 0.1 0.48 10.1 0.0 2.2 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|88604081|ref|YP_504259.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase UPF0051 PF01458.17 gi|88604082|ref|YP_504260.1| - 5e-50 170.2 0.1 6.4e-50 169.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) PCMT PF01135.19 gi|88604083|ref|YP_504261.1| - 2.5e-62 210.4 0.0 2.9e-62 210.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|88604083|ref|YP_504261.1| - 0.00013 22.6 0.0 0.0002 22.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604083|ref|YP_504261.1| - 0.0028 18.2 0.0 0.0049 17.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604083|ref|YP_504261.1| - 0.004 17.0 0.0 0.0048 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|88604083|ref|YP_504261.1| - 0.0046 16.1 0.0 0.0064 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase SAM_MT PF04445.13 gi|88604083|ref|YP_504261.1| - 0.0059 16.0 0.1 0.0088 15.5 0.1 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltr_RsmB-F PF01189.17 gi|88604083|ref|YP_504261.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|88604083|ref|YP_504261.1| - 0.022 14.6 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|88604083|ref|YP_504261.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase PGM_PMM_I PF02878.16 gi|88604085|ref|YP_504263.1| - 2e-27 95.6 0.0 3.6e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|88604085|ref|YP_504263.1| - 3.4e-19 69.4 0.0 6.5e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|88604085|ref|YP_504263.1| - 1.2e-13 51.3 0.0 2.2e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|88604085|ref|YP_504263.1| - 3.8e-11 43.0 0.0 1.2e-10 41.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain RES PF08808.11 gi|88604085|ref|YP_504263.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 RES domain NTP_transferase PF00483.23 gi|88604086|ref|YP_504264.1| - 7.7e-34 117.4 0.0 1.1e-33 116.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|88604086|ref|YP_504264.1| - 2e-23 81.2 32.3 2.1e-10 39.9 0.2 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|88604086|ref|YP_504264.1| - 3.8e-15 56.6 0.0 5.2e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|88604086|ref|YP_504264.1| - 6.4e-07 29.0 28.4 9.1e-05 22.1 0.9 5.0 4 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|88604086|ref|YP_504264.1| - 1.4e-05 25.0 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|88604086|ref|YP_504264.1| - 0.016 15.1 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF4954 PF16314.5 gi|88604086|ref|YP_504264.1| - 0.02 13.1 6.6 0.007 14.6 2.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) NTP_transferase PF00483.23 gi|88604087|ref|YP_504265.1| - 3.7e-30 105.3 0.0 5e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|88604087|ref|YP_504265.1| - 3.8e-24 83.5 28.0 2e-10 40.0 4.4 5.1 2 1 4 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|88604087|ref|YP_504265.1| - 9.4e-18 65.1 0.0 1.3e-17 64.6 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88604087|ref|YP_504265.1| - 6.7e-07 29.3 0.3 1.1e-06 28.6 0.3 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|88604087|ref|YP_504265.1| - 1.5e-06 27.8 0.4 1.5e-06 27.8 0.4 5.2 6 0 0 6 6 6 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|88604087|ref|YP_504265.1| - 4.6 5.2 5.6 3.8 5.5 0.8 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4954) SIS PF01380.22 gi|88604088|ref|YP_504266.1| - 3.9e-47 159.4 0.3 1.7e-22 79.7 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|88604088|ref|YP_504266.1| - 6.6e-22 78.1 0.0 1.5e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|88604088|ref|YP_504266.1| - 2e-18 66.4 0.0 3.2e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|88604088|ref|YP_504266.1| - 0.076 13.0 0.3 0.44 10.5 0.0 2.4 3 0 0 3 3 3 0 SIS domain Glycos_transf_1 PF00534.20 gi|88604089|ref|YP_504267.1| - 8.3e-19 67.8 0.0 1.3e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88604089|ref|YP_504267.1| - 1.2e-15 58.1 0.0 2e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|88604089|ref|YP_504267.1| - 6.1e-11 43.0 0.2 9.1e-11 42.4 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|88604089|ref|YP_504267.1| - 1e-10 41.9 0.4 1.8e-10 41.1 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|88604090|ref|YP_504268.1| - 1.7e-28 99.3 0.0 2.9e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88604090|ref|YP_504268.1| - 4.3e-18 66.0 0.0 8.3e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88604090|ref|YP_504268.1| - 0.0029 17.6 0.1 0.019 14.9 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|88604090|ref|YP_504268.1| - 0.13 12.7 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|88604090|ref|YP_504268.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase GDP_Man_Dehyd PF16363.5 gi|88604091|ref|YP_504269.1| - 4.5e-74 249.8 0.0 1.6e-70 238.1 0.0 2.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|88604091|ref|YP_504269.1| - 3.8e-49 167.3 0.1 6.9e-49 166.5 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|88604091|ref|YP_504269.1| - 4e-08 32.7 0.0 6e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|88604091|ref|YP_504269.1| - 2.1e-07 30.4 0.0 8.5e-07 28.4 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|88604091|ref|YP_504269.1| - 3.7e-07 29.6 0.0 2.4e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|88604091|ref|YP_504269.1| - 1.8e-06 27.1 0.0 3.2e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|88604091|ref|YP_504269.1| - 0.0075 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|88604091|ref|YP_504269.1| - 0.057 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding STT3 PF02516.14 gi|88604092|ref|YP_504270.1| - 1e-30 107.1 25.5 1.8e-30 106.3 25.5 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|88604092|ref|YP_504270.1| - 1.8e-07 31.4 0.9 4.3e-07 30.1 0.9 1.6 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain DUF3367 PF11847.8 gi|88604092|ref|YP_504270.1| - 0.047 11.6 0.5 0.093 10.6 0.0 1.7 2 0 0 2 2 2 0 Alpha-(1->3)-arabinofuranosyltransferase CbiN PF02553.15 gi|88604092|ref|YP_504270.1| - 0.76 9.8 7.0 4.4 7.4 0.1 3.6 3 0 0 3 3 3 0 Cobalt transport protein component CbiN DUF2098 PF09871.9 gi|88604093|ref|YP_504271.1| - 1.9e-22 79.4 0.0 2.2e-22 79.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) GTP_EFTU PF00009.27 gi|88604094|ref|YP_504272.1| - 6.6e-31 107.4 0.8 3.1e-30 105.2 0.8 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|88604094|ref|YP_504272.1| - 3.4e-30 104.1 0.2 1.5e-29 102.1 0.2 2.2 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.23 gi|88604094|ref|YP_504272.1| - 1.5e-05 25.1 0.0 6.7e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|88604094|ref|YP_504272.1| - 3.2e-05 23.9 0.5 0.0079 16.1 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU_D2 PF03144.25 gi|88604094|ref|YP_504272.1| - 3.2e-05 24.2 1.3 9.3e-05 22.7 1.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 FeoB_N PF02421.18 gi|88604094|ref|YP_504272.1| - 0.0053 16.3 1.2 0.69 9.4 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B cobW PF02492.19 gi|88604094|ref|YP_504272.1| - 0.019 14.6 0.5 3.6 7.1 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zn_ribbon_SprT PF17283.2 gi|88604094|ref|YP_504272.1| - 0.06 13.3 1.9 0.59 10.1 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Dynamin_N PF00350.23 gi|88604094|ref|YP_504272.1| - 0.09 12.8 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 Dynamin family PduV-EutP PF10662.9 gi|88604094|ref|YP_504272.1| - 0.11 12.3 0.4 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|88604094|ref|YP_504272.1| - 0.15 11.3 3.7 1.3 8.2 0.0 2.9 4 0 0 4 4 4 0 Septin PIN_9 PF18477.1 gi|88604095|ref|YP_504273.1| - 7e-29 100.5 0.0 8.1e-29 100.3 0.0 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|88604095|ref|YP_504273.1| - 3.3e-05 24.2 0.0 0.0028 18.0 0.0 2.1 1 1 1 2 2 2 2 PIN domain PIN_12 PF16289.5 gi|88604095|ref|YP_504273.1| - 0.002 18.6 0.0 0.0035 17.9 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|88604095|ref|YP_504273.1| - 0.01 16.3 0.0 0.12 12.9 0.0 2.0 1 1 0 1 1 1 0 PIN domain PIN_10 PF18478.1 gi|88604095|ref|YP_504273.1| - 0.081 13.1 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 PIN like domain SHS2_Rpb7-N PF03876.17 gi|88604096|ref|YP_504274.1| - 6.1e-17 61.8 0.1 1e-16 61.0 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|88604096|ref|YP_504274.1| - 1.9e-10 40.9 0.0 4.2e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|88604096|ref|YP_504274.1| - 0.0099 16.1 0.1 0.049 13.9 0.1 2.1 2 1 0 2 2 2 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|88604097|ref|YP_504275.1| - 2.6e-12 46.7 0.1 3.5e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Prok-RING_4 PF14447.6 gi|88604097|ref|YP_504275.1| - 0.00073 19.3 1.4 0.001 18.8 1.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 Laminin_EGF PF00053.24 gi|88604097|ref|YP_504275.1| - 0.02 15.0 1.4 0.026 14.7 1.4 1.2 1 0 0 1 1 1 0 Laminin EGF domain zf-ribbon_3 PF13248.6 gi|88604097|ref|YP_504275.1| - 0.021 14.2 1.7 0.072 12.5 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain FUR PF01475.19 gi|88604097|ref|YP_504275.1| - 0.036 14.2 0.1 0.042 14.0 0.1 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family RecR PF02132.15 gi|88604097|ref|YP_504275.1| - 0.045 13.3 1.6 0.06 12.9 1.6 1.2 1 0 0 1 1 1 0 RecR protein HicB_lk_antitox PF15919.5 gi|88604097|ref|YP_504275.1| - 0.059 13.5 0.0 0.062 13.4 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system MCR PF18509.1 gi|88604097|ref|YP_504275.1| - 0.15 11.7 0.9 0.15 11.7 0.9 1.8 2 0 0 2 2 2 0 Magnetochrome domain DUF359 PF04019.12 gi|88604098|ref|YP_504276.1| - 2.1e-34 117.9 0.0 2.6e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|88604099|ref|YP_504277.1| - 1.1e-21 76.6 0.0 1.3e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|88604100|ref|YP_504278.1| - 1.3e-18 66.9 4.0 1.7e-18 66.5 4.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a IBR PF01485.21 gi|88604100|ref|YP_504278.1| - 0.00049 20.3 0.6 0.00053 20.2 0.6 1.2 1 1 0 1 1 1 1 IBR domain, a half RING-finger domain Ribosomal_L37e PF01907.19 gi|88604100|ref|YP_504278.1| - 0.0023 18.1 2.1 0.0036 17.4 2.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|88604100|ref|YP_504278.1| - 0.0068 16.3 7.4 0.034 14.1 7.1 2.0 1 1 0 1 1 1 1 Nudix N-terminal DZR PF12773.7 gi|88604100|ref|YP_504278.1| - 0.028 14.5 2.1 0.055 13.5 2.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|88604100|ref|YP_504278.1| - 0.046 13.5 4.5 1.3 8.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain MqsA_antitoxin PF15731.5 gi|88604100|ref|YP_504278.1| - 0.049 13.7 0.1 0.05 13.7 0.1 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA GFA PF04828.14 gi|88604100|ref|YP_504278.1| - 0.053 13.9 1.8 0.21 12.0 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.19 gi|88604100|ref|YP_504278.1| - 0.098 12.7 0.5 0.1 12.6 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_13 PF09855.9 gi|88604100|ref|YP_504278.1| - 0.11 12.7 0.6 0.11 12.7 0.6 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|88604100|ref|YP_504278.1| - 0.23 10.9 5.4 2.7 7.5 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|88604100|ref|YP_504278.1| - 0.33 10.7 6.2 0.52 10.0 1.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|88604100|ref|YP_504278.1| - 0.76 9.8 6.3 13 5.9 6.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|88604100|ref|YP_504278.1| - 3.6 8.0 7.8 0.2 12.0 2.4 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar Peptidase_M22 PF00814.25 gi|88604101|ref|YP_504279.1| - 1.1e-76 258.1 0.0 1.6e-76 257.6 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.22 gi|88604101|ref|YP_504279.1| - 1.3e-11 44.5 0.0 3.6e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 RIO1 family Kdo PF06293.14 gi|88604101|ref|YP_504279.1| - 8.4e-11 41.6 0.3 2.7e-10 39.9 0.3 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|88604101|ref|YP_504279.1| - 2.6e-06 27.5 0.6 1.6e-05 25.0 0.5 1.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|88604101|ref|YP_504279.1| - 8e-06 25.4 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|88604101|ref|YP_504279.1| - 0.0028 17.3 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|88604101|ref|YP_504279.1| - 0.023 14.0 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase Ham1p_like PF01725.16 gi|88604102|ref|YP_504280.1| - 2.3e-45 154.8 0.0 2.6e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_L40e PF01020.17 gi|88604103|ref|YP_504281.1| - 1.3e-05 25.0 4.2 1.5e-05 24.8 4.2 1.2 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|88604103|ref|YP_504281.1| - 0.00023 20.8 0.8 0.00035 20.2 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|88604103|ref|YP_504281.1| - 0.0027 17.7 0.5 0.0028 17.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|88604103|ref|YP_504281.1| - 0.0052 16.1 1.6 0.007 15.7 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|88604103|ref|YP_504281.1| - 0.012 15.6 4.0 0.4 10.8 4.5 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|88604103|ref|YP_504281.1| - 0.014 15.0 4.4 0.02 14.5 4.4 1.3 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Methyltransf_13 PF08421.11 gi|88604103|ref|YP_504281.1| - 0.066 13.5 1.4 0.56 10.5 1.4 2.0 1 1 0 1 1 1 0 Putative zinc binding domain DNA_RNApol_7kD PF03604.13 gi|88604103|ref|YP_504281.1| - 0.085 12.6 4.6 0.21 11.3 4.6 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_13 PF09855.9 gi|88604103|ref|YP_504281.1| - 0.088 13.0 0.1 0.088 13.0 0.1 1.7 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|88604103|ref|YP_504281.1| - 0.22 11.4 3.8 1.5 8.8 3.8 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1917 PF08939.10 gi|88604104|ref|YP_504282.1| - 3e-22 79.8 0.4 4.2e-22 79.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) Cytokin_check_N PF10407.9 gi|88604104|ref|YP_504282.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Cdc14 phosphatase binding protein N-terminus RPT PF13446.6 gi|88604104|ref|YP_504282.1| - 0.16 11.9 0.1 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 A repeated domain in UCH-protein MFS_1 PF07690.16 gi|88604106|ref|YP_504284.1| - 3.2e-51 174.3 59.3 1.7e-30 106.2 26.5 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|88604106|ref|YP_504284.1| - 1.2e-09 37.6 31.7 1.1e-08 34.4 10.9 2.5 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|88604106|ref|YP_504284.1| - 7.6e-08 31.6 16.3 7.6e-08 31.6 16.3 3.4 1 1 2 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|88604106|ref|YP_504284.1| - 6.2e-07 28.2 22.2 0.0014 17.1 12.4 2.2 1 1 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|88604106|ref|YP_504284.1| - 0.00076 17.9 3.0 0.00076 17.9 3.0 3.9 2 2 2 4 4 4 3 Organic Anion Transporter Polypeptide (OATP) family LacY_symp PF01306.19 gi|88604106|ref|YP_504284.1| - 0.0031 16.4 24.1 0.053 12.3 9.2 3.8 3 1 0 3 3 3 3 LacY proton/sugar symporter BT1 PF03092.16 gi|88604106|ref|YP_504284.1| - 0.1 10.8 9.8 0.18 10.0 4.2 2.6 2 0 0 2 2 2 0 BT1 family HAD_2 PF13419.6 gi|88604107|ref|YP_504285.1| - 2.5e-26 92.8 0.0 3e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|88604107|ref|YP_504285.1| - 3.5e-15 56.9 0.3 1.6e-14 54.7 0.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|88604107|ref|YP_504285.1| - 1.3e-10 41.2 0.0 4.3e-10 39.5 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|88604107|ref|YP_504285.1| - 0.0028 17.7 0.0 0.066 13.3 0.0 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase PAS_9 PF13426.7 gi|88604108|ref|YP_504286.1| - 1.4e-46 157.0 0.1 1.1e-10 41.7 0.0 5.7 5 1 0 5 5 5 5 PAS domain PAS PF00989.25 gi|88604108|ref|YP_504286.1| - 1.3e-40 137.9 0.0 5e-10 39.4 0.0 5.7 5 1 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|88604108|ref|YP_504286.1| - 1.6e-39 134.6 0.0 1.2e-10 41.6 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|88604108|ref|YP_504286.1| - 3.9e-27 93.7 0.0 1.4e-05 25.0 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|88604108|ref|YP_504286.1| - 5.5e-16 58.6 0.0 5e-07 29.9 0.0 6.2 6 0 0 6 6 6 2 PAS fold PAS_7 PF12860.7 gi|88604108|ref|YP_504286.1| - 3.6e-08 33.6 0.1 0.02 15.1 0.0 6.2 7 0 0 7 7 7 1 PAS fold HTH_11 PF08279.12 gi|88604108|ref|YP_504286.1| - 0.015 15.2 0.1 0.05 13.6 0.1 1.9 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|88604108|ref|YP_504286.1| - 0.022 14.6 0.0 0.072 12.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain MEKHLA PF08670.11 gi|88604108|ref|YP_504286.1| - 0.022 14.6 0.0 1 9.3 0.0 2.5 2 0 0 2 2 2 0 MEKHLA domain TrmB PF01978.19 gi|88604108|ref|YP_504286.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_NinH PF06322.11 gi|88604108|ref|YP_504286.1| - 0.15 12.0 0.0 0.44 10.5 0.0 1.7 1 0 0 1 1 1 0 Phage NinH protein HTH_19 PF12844.7 gi|88604108|ref|YP_504286.1| - 0.73 9.9 2.3 12 6.0 0.3 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain HATPase_c PF02518.26 gi|88604109|ref|YP_504287.1| - 5.4e-21 75.2 0.0 1.6e-20 73.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|88604109|ref|YP_504287.1| - 5.1e-13 49.0 1.2 8.8e-09 35.4 0.0 3.2 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|88604109|ref|YP_504287.1| - 3.5e-11 43.0 0.4 3.5e-11 43.0 0.4 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|88604109|ref|YP_504287.1| - 8.8e-10 38.8 3.0 3.2e-06 27.3 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|88604109|ref|YP_504287.1| - 6.7e-08 32.8 0.0 8.3e-06 26.0 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|88604109|ref|YP_504287.1| - 3.5e-06 26.9 0.0 0.00022 21.1 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|88604109|ref|YP_504287.1| - 0.00011 22.4 0.0 0.00029 21.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold HAMP PF00672.25 gi|88604109|ref|YP_504287.1| - 0.00014 22.2 0.0 0.00032 21.0 0.0 1.7 1 0 0 1 1 1 1 HAMP domain HOOK PF05622.12 gi|88604109|ref|YP_504287.1| - 0.0027 15.9 1.8 0.0027 15.9 1.8 1.5 2 0 0 2 2 2 1 HOOK protein H-kinase_dim PF02895.14 gi|88604109|ref|YP_504287.1| - 0.027 14.9 0.0 7.7 7.0 0.0 3.3 2 2 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain OmpH PF03938.14 gi|88604109|ref|YP_504287.1| - 0.043 14.1 6.2 0.92 9.9 6.3 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) dCache_2 PF08269.11 gi|88604109|ref|YP_504287.1| - 0.043 13.0 3.4 0.38 9.9 1.9 2.5 2 0 0 2 2 2 0 Cache domain LemA PF04011.12 gi|88604109|ref|YP_504287.1| - 0.073 12.9 3.4 0.25 11.2 3.4 1.8 1 1 0 1 1 1 0 LemA family Prominin PF05478.11 gi|88604109|ref|YP_504287.1| - 0.14 10.1 6.6 0.36 8.7 2.8 2.6 3 0 0 3 3 3 0 Prominin FAP206 PF12018.8 gi|88604109|ref|YP_504287.1| - 0.25 10.8 5.4 0.56 9.7 5.4 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF724 PF05266.14 gi|88604109|ref|YP_504287.1| - 0.29 11.0 4.0 0.85 9.4 4.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF724) NICE-3 PF07406.11 gi|88604109|ref|YP_504287.1| - 0.4 10.7 3.7 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 NICE-3 protein Nsp1_C PF05064.13 gi|88604109|ref|YP_504287.1| - 2.4 8.0 10.7 3.9 7.3 5.4 2.8 3 0 0 3 3 2 0 Nsp1-like C-terminal region HTH_WhiA PF02650.14 gi|88604109|ref|YP_504287.1| - 2.7 8.4 6.5 0.41 11.0 0.2 2.5 2 0 0 2 2 2 0 WhiA C-terminal HTH domain LMBR1 PF04791.16 gi|88604109|ref|YP_504287.1| - 5.2 5.9 7.6 0.11 11.3 0.3 2.0 3 0 0 3 3 3 0 LMBR1-like membrane protein Response_reg PF00072.24 gi|88604110|ref|YP_504288.1| - 2.2e-17 63.2 0.0 2.7e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Endonuc_Holl PF10107.9 gi|88604111|ref|YP_504289.1| - 3.1e-66 222.2 0.8 3.7e-66 221.9 0.8 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase Response_reg PF00072.24 gi|88604112|ref|YP_504290.1| - 6.1e-18 65.0 0.0 6.8e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Radical_SAM PF04055.21 gi|88604113|ref|YP_504291.1| - 2.9e-08 34.2 1.0 3.6e-08 34.0 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88604113|ref|YP_504291.1| - 0.00015 22.1 0.0 0.00034 20.9 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Exc PF07825.11 gi|88604113|ref|YP_504291.1| - 0.11 12.5 0.1 2.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Excisionase-like protein Lactamase_B_2 PF12706.7 gi|88604114|ref|YP_504292.1| - 3e-21 75.9 0.0 3.8e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|88604114|ref|YP_504292.1| - 7.8e-13 48.9 0.8 2.5e-12 47.2 0.8 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|88604114|ref|YP_504292.1| - 3.4e-05 23.8 0.0 5.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DNA_ligase_A_M PF01068.21 gi|88604115|ref|YP_504293.1| - 1.2e-47 162.2 0.0 2.3e-47 161.3 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|88604115|ref|YP_504293.1| - 1.1e-32 113.8 0.0 3.6e-32 112.1 0.0 1.8 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|88604115|ref|YP_504293.1| - 2.3e-20 73.0 0.0 8.3e-20 71.2 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|88604115|ref|YP_504293.1| - 4.9e-06 26.9 0.0 8.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 RNA ligase SH3_15 PF18346.1 gi|88604115|ref|YP_504293.1| - 0.0025 18.1 0.1 1.6 9.1 0.0 2.6 2 0 0 2 2 2 2 Mind bomb SH3 repeat domain DNA_ligase_OB_2 PF14743.6 gi|88604115|ref|YP_504293.1| - 0.13 12.3 0.0 14 5.8 0.0 2.6 2 0 0 2 2 2 0 DNA ligase OB-like domain DUF2850 PF11012.8 gi|88604115|ref|YP_504293.1| - 0.13 12.5 0.0 0.33 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2850) AdoMet_dc PF02675.15 gi|88604116|ref|YP_504294.1| - 4.1e-28 97.7 0.0 4.8e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spermine_synth PF01564.17 gi|88604117|ref|YP_504295.1| - 6.7e-48 162.6 0.0 9.7e-48 162.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|88604117|ref|YP_504295.1| - 0.0024 18.6 0.0 0.0036 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604117|ref|YP_504295.1| - 0.012 16.3 0.0 0.023 15.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Spermine_synt_N PF17284.2 gi|88604117|ref|YP_504295.1| - 0.068 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Spermidine synthase tetramerisation domain RrnaAD PF00398.20 gi|88604117|ref|YP_504295.1| - 0.17 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|88604117|ref|YP_504295.1| - 0.19 12.5 0.0 0.37 11.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain tRNA-synt_1c PF00749.21 gi|88604118|ref|YP_504296.1| - 3.3e-72 243.1 0.0 4.2e-72 242.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|88604118|ref|YP_504296.1| - 1.1e-24 87.3 0.0 1.9e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain OHCU_decarbox PF09349.10 gi|88604118|ref|YP_504296.1| - 0.17 12.4 0.1 20 5.6 0.0 2.2 2 0 0 2 2 2 0 OHCU decarboxylase polyprenyl_synt PF00348.17 gi|88604119|ref|YP_504297.1| - 2.1e-64 217.1 0.2 2.7e-64 216.7 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.27 gi|88604120|ref|YP_504298.1| - 3.6e-09 36.9 0.0 7.4e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|88604120|ref|YP_504298.1| - 3.7e-07 29.9 0.0 8.5e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|88604120|ref|YP_504298.1| - 0.00073 19.4 0.8 0.0039 17.1 0.0 2.4 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain PDEase_II PF02112.15 gi|88604120|ref|YP_504298.1| - 0.027 13.6 0.1 0.045 12.9 0.1 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Spore_YhcN_YlaJ PF09580.10 gi|88604120|ref|YP_504298.1| - 0.12 12.4 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) FMN_dh PF01070.18 gi|88604121|ref|YP_504299.1| - 4.2e-22 78.6 0.4 1.2e-14 54.1 1.7 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|88604121|ref|YP_504299.1| - 0.00024 20.2 3.2 0.0014 17.7 0.3 2.8 3 1 1 4 4 4 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|88604121|ref|YP_504299.1| - 0.006 15.8 0.0 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|88604121|ref|YP_504299.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase NMO PF03060.15 gi|88604121|ref|YP_504299.1| - 0.056 12.8 0.1 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase AA_kinase PF00696.28 gi|88604122|ref|YP_504300.1| - 1.6e-41 142.5 1.8 1.8e-41 142.3 1.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family NBD_C PF17042.5 gi|88604122|ref|YP_504300.1| - 0.0062 17.1 0.2 0.018 15.6 0.1 1.7 1 1 0 1 1 1 1 Nucleotide-binding C-terminal domain GHMP_kinases_N PF00288.26 gi|88604123|ref|YP_504301.1| - 1.2e-17 63.8 0.1 2.8e-17 62.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|88604123|ref|YP_504301.1| - 1.1e-09 38.5 0.4 3.1e-09 37.1 0.4 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|88604123|ref|YP_504301.1| - 0.025 14.2 0.6 0.048 13.2 0.0 1.8 2 0 0 2 2 2 0 Galactokinase galactose-binding signature Memo PF01875.17 gi|88604124|ref|YP_504302.1| - 1.1e-63 215.0 0.0 1.3e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|88604124|ref|YP_504302.1| - 0.043 12.9 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|88604125|ref|YP_504303.1| - 3.4e-27 95.1 0.1 6e-14 51.8 0.3 2.0 2 0 0 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.22 gi|88604126|ref|YP_504304.1| - 2.7e-68 230.4 0.0 3.5e-68 230.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|88604126|ref|YP_504304.1| - 2.1e-32 112.1 0.1 4.9e-32 110.9 0.1 1.6 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|88604126|ref|YP_504304.1| - 5.7e-09 35.9 0.0 1.3e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|88604126|ref|YP_504304.1| - 0.002 17.3 0.4 0.0031 16.7 0.1 1.5 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|88604127|ref|YP_504305.1| - 1e-13 50.9 0.1 1.2e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|88604128|ref|YP_504306.1| - 2.7e-29 101.2 1.1 3e-29 101.1 1.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|88604129|ref|YP_504307.1| - 8.3e-32 110.2 0.2 9.4e-32 110.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|88604130|ref|YP_504308.1| - 1.3e-07 31.9 0.1 1.2e-05 25.5 0.1 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|88604131|ref|YP_504309.1| - 3.4e-13 49.4 0.1 4e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|88604131|ref|YP_504309.1| - 2.2e-06 28.4 1.8 1.2e-05 26.0 1.8 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|88604132|ref|YP_504310.1| - 4.1e-28 98.0 0.0 6.9e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|88604132|ref|YP_504310.1| - 9.6e-13 47.4 0.0 1.5e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|88604132|ref|YP_504310.1| - 1.5e-07 30.9 13.4 1.5e-06 27.7 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88604132|ref|YP_504310.1| - 5.2e-07 29.7 7.4 5.2e-07 29.7 7.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88604132|ref|YP_504310.1| - 8.1e-06 26.3 8.5 8.1e-06 26.3 8.5 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88604132|ref|YP_504310.1| - 6e-05 22.9 2.5 6e-05 22.9 2.5 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|88604132|ref|YP_504310.1| - 0.00012 22.2 10.4 0.00012 22.2 10.4 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88604132|ref|YP_504310.1| - 0.00045 20.2 2.5 0.00045 20.2 2.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|88604132|ref|YP_504310.1| - 0.00068 20.4 4.0 0.00068 20.4 4.0 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88604132|ref|YP_504310.1| - 0.0013 18.8 2.5 0.0013 18.8 2.5 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88604132|ref|YP_504310.1| - 0.0052 17.2 13.1 0.51 10.8 0.2 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88604132|ref|YP_504310.1| - 0.013 15.9 2.0 0.013 15.9 2.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|88604132|ref|YP_504310.1| - 0.016 15.8 14.7 0.028 15.0 0.5 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88604132|ref|YP_504310.1| - 0.019 15.9 1.7 0.019 15.9 1.7 3.0 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|88604132|ref|YP_504310.1| - 0.055 14.2 2.1 0.055 14.2 2.1 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|88604132|ref|YP_504310.1| - 0.12 13.2 0.7 0.12 13.2 0.7 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88604132|ref|YP_504310.1| - 0.49 10.6 8.1 1.1 9.5 8.1 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88604132|ref|YP_504310.1| - 2.7 8.6 8.9 0.32 11.6 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Ribosomal_S11 PF00411.19 gi|88604133|ref|YP_504311.1| - 4.7e-48 162.2 7.4 1.6e-47 160.5 7.4 1.7 1 1 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|88604134|ref|YP_504312.1| - 5.5e-15 54.8 1.4 6.2e-15 54.6 0.1 1.8 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|88604134|ref|YP_504312.1| - 0.00013 22.8 2.2 0.00082 20.2 0.6 2.1 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|88604135|ref|YP_504313.1| - 1.4e-40 138.7 1.7 1.6e-40 138.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_2 PF12826.7 gi|88604135|ref|YP_504313.1| - 0.062 13.4 0.1 0.15 12.2 0.1 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|88604135|ref|YP_504313.1| - 0.07 13.8 0.1 0.14 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain DS PF01916.17 gi|88604136|ref|YP_504314.1| - 2e-92 309.5 0.0 2.3e-92 309.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CBS PF00571.28 gi|88604137|ref|YP_504315.1| - 3.3e-31 107.5 14.2 1.5e-14 54.2 0.7 4.1 4 0 0 4 4 4 4 CBS domain Dimer_Tnp_hAT PF05699.14 gi|88604137|ref|YP_504315.1| - 0.016 15.0 0.1 2.2 8.1 0.0 2.5 2 0 0 2 2 2 0 hAT family C-terminal dimerisation region Ribosomal_L9_C PF03948.14 gi|88604137|ref|YP_504315.1| - 0.027 14.9 1.5 6.6 7.3 0.0 3.3 4 0 0 4 4 4 0 Ribosomal protein L9, C-terminal domain Rubredoxin_C PF18267.1 gi|88604137|ref|YP_504315.1| - 0.13 12.2 0.9 5.6 7.0 0.0 2.8 3 0 0 3 3 3 0 Rubredoxin NAD+ reductase C-terminal domain H_kinase_N PF12282.8 gi|88604137|ref|YP_504315.1| - 0.43 10.5 3.0 1.3 9.0 0.2 2.6 2 2 0 2 2 2 0 Signal transduction histidine kinase DUF3659 PF12396.8 gi|88604137|ref|YP_504315.1| - 1.1 9.2 3.0 5.7 6.9 0.0 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) CBS PF00571.28 gi|88604138|ref|YP_504316.1| - 3.5e-43 145.9 12.6 2.6e-13 50.2 0.3 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|88604139|ref|YP_504317.1| - 2.9e-47 158.9 10.3 1.2e-13 51.2 0.8 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|88604140|ref|YP_504318.1| - 1.6e-22 79.7 5.8 9.4e-15 54.8 2.7 2.3 2 0 0 2 2 2 2 CBS domain OrfB_Zn_ribbon PF07282.11 gi|88604140|ref|YP_504318.1| - 0.0015 18.4 0.1 0.0034 17.3 0.1 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|88604140|ref|YP_504318.1| - 6.6 6.3 7.0 1.4e+02 2.1 3.9 3.2 2 1 0 2 2 2 0 zinc-ribbon domain MMR_HSR1 PF01926.23 gi|88604141|ref|YP_504319.1| - 2.8e-15 56.4 0.0 3.6e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|88604141|ref|YP_504319.1| - 4.4e-12 45.9 0.8 0.00017 21.2 0.0 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|88604141|ref|YP_504319.1| - 1.9e-08 34.0 0.0 0.0075 15.7 0.0 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|88604141|ref|YP_504319.1| - 1e-05 25.1 0.1 0.00012 21.7 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA PF00004.29 gi|88604141|ref|YP_504319.1| - 4.6e-05 23.9 0.1 0.014 15.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SRPRB PF09439.10 gi|88604141|ref|YP_504319.1| - 6e-05 22.5 0.1 0.077 12.4 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|88604141|ref|YP_504319.1| - 0.0001 22.3 0.4 0.071 13.0 0.4 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_18 PF13238.6 gi|88604141|ref|YP_504319.1| - 0.0029 18.1 0.0 0.0051 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|88604141|ref|YP_504319.1| - 0.0048 16.8 0.0 0.01 15.8 0.0 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|88604141|ref|YP_504319.1| - 0.0051 17.2 0.0 0.0084 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1_Xtn PF16897.5 gi|88604141|ref|YP_504319.1| - 0.0057 16.6 0.0 0.0086 16.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|88604141|ref|YP_504319.1| - 0.0061 16.3 0.0 0.0099 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|88604141|ref|YP_504319.1| - 0.0075 15.7 0.0 0.043 13.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein RuvB_N PF05496.12 gi|88604141|ref|YP_504319.1| - 0.0088 15.8 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Septin PF00735.18 gi|88604141|ref|YP_504319.1| - 0.01 15.2 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 Septin RNA_helicase PF00910.22 gi|88604141|ref|YP_504319.1| - 0.012 15.9 0.1 0.024 15.0 0.0 1.5 2 0 0 2 2 1 0 RNA helicase NB-ARC PF00931.22 gi|88604141|ref|YP_504319.1| - 0.015 14.5 0.0 0.022 14.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Roc PF08477.13 gi|88604141|ref|YP_504319.1| - 0.021 15.0 0.1 0.21 11.8 0.0 2.1 1 1 1 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|88604141|ref|YP_504319.1| - 0.024 14.9 0.1 0.039 14.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|88604141|ref|YP_504319.1| - 0.044 13.8 0.0 3.5 7.7 0.1 2.2 1 1 1 2 2 2 0 Dynamin family ABC_tran PF00005.27 gi|88604141|ref|YP_504319.1| - 0.046 14.2 0.0 0.063 13.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|88604141|ref|YP_504319.1| - 0.048 12.7 0.0 0.076 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|88604141|ref|YP_504319.1| - 0.078 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 NTPase MnmE_helical PF12631.7 gi|88604141|ref|YP_504319.1| - 0.092 12.9 0.0 0.092 12.9 0.0 1.2 1 1 0 1 1 1 0 MnmE helical domain MeaB PF03308.16 gi|88604141|ref|YP_504319.1| - 0.098 11.6 0.3 0.4 9.6 0.0 2.1 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|88604141|ref|YP_504319.1| - 0.14 12.4 0.0 0.75 10.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|88604141|ref|YP_504319.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.17 gi|88604141|ref|YP_504319.1| - 0.19 11.5 0.0 24 4.6 0.0 2.7 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein Ribo_biogen_C PF04034.13 gi|88604141|ref|YP_504319.1| - 0.21 11.3 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal DUF2073 PF09846.9 gi|88604142|ref|YP_504320.1| - 1.1e-45 153.8 0.1 1.3e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.9 gi|88604143|ref|YP_504321.1| - 1.5e-34 119.1 0.2 2.3e-34 118.5 0.2 1.3 1 1 0 1 1 1 1 Zn-ribbon containing protein Spt4 PF06093.13 gi|88604143|ref|YP_504321.1| - 0.14 12.3 0.9 0.28 11.3 0.9 1.5 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger SUI1 PF01253.22 gi|88604144|ref|YP_504322.1| - 2.2e-22 79.4 0.1 3e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 ELL PF10390.9 gi|88604144|ref|YP_504322.1| - 0.0046 16.5 0.0 0.0057 16.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase II elongation factor ELL DTW PF03942.15 gi|88604144|ref|YP_504322.1| - 0.021 14.5 0.5 0.028 14.1 0.5 1.2 1 0 0 1 1 1 0 DTW domain GATase_3 PF07685.14 gi|88604145|ref|YP_504323.1| - 1.5e-47 161.8 0.1 2e-47 161.4 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|88604145|ref|YP_504323.1| - 6.1e-17 62.1 0.1 1.3e-15 57.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|88604145|ref|YP_504323.1| - 6.6e-16 58.5 0.0 1.1e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|88604145|ref|YP_504323.1| - 1.3e-05 25.1 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|88604145|ref|YP_504323.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|88604145|ref|YP_504323.1| - 0.19 11.5 0.1 0.44 10.3 0.1 1.5 1 0 0 1 1 1 0 Peptidase C26 zf-CXXC PF02008.20 gi|88604146|ref|YP_504324.1| - 0.019 14.9 0.2 0.032 14.2 0.2 1.4 1 0 0 1 1 1 0 CXXC zinc finger domain Med9 PF07544.13 gi|88604147|ref|YP_504325.1| - 0.21 11.7 16.3 2.5 8.2 5.2 4.5 2 2 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 DUF16 PF01519.16 gi|88604147|ref|YP_504325.1| - 0.23 11.9 13.4 0.077 13.5 5.5 3.3 2 1 0 2 2 2 0 Protein of unknown function DUF16 ATP-synt_B PF00430.18 gi|88604147|ref|YP_504325.1| - 0.63 10.1 17.3 0.52 10.4 4.1 2.4 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) ApoO PF09769.9 gi|88604147|ref|YP_504325.1| - 0.72 9.8 2.0 2.2 8.2 0.1 2.5 2 1 0 2 2 2 0 Apolipoprotein O DNA_primase_lrg PF04104.14 gi|88604147|ref|YP_504325.1| - 1.2 8.5 12.7 0.057 12.8 2.0 2.6 3 0 0 3 3 3 0 Eukaryotic and archaeal DNA primase, large subunit CHD5 PF04420.14 gi|88604147|ref|YP_504325.1| - 1.3 8.8 11.8 0.064 13.1 1.9 2.6 2 0 0 2 2 2 0 CHD5-like protein DUF1664 PF07889.12 gi|88604147|ref|YP_504325.1| - 2.6 8.1 14.7 13 5.9 6.7 4.1 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Uso1_p115_C PF04871.13 gi|88604147|ref|YP_504325.1| - 3.2 8.1 29.5 2.1 8.7 6.3 3.4 3 0 0 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region Mt_ATP-synt_D PF05873.12 gi|88604147|ref|YP_504325.1| - 4.3 7.2 9.8 4.4 7.2 3.3 2.9 2 1 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) CTP_transf_like PF01467.26 gi|88604148|ref|YP_504326.1| - 1.2e-15 57.9 0.0 3e-15 56.7 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|88604148|ref|YP_504326.1| - 0.0014 17.9 0.2 0.025 13.8 0.3 2.0 2 0 0 2 2 2 1 HIGH Nucleotidyl Transferase Citrate_ly_lig PF08218.11 gi|88604148|ref|YP_504326.1| - 0.0029 17.3 0.0 0.012 15.3 0.0 1.9 2 1 0 2 2 2 1 Citrate lyase ligase C-terminal domain ATP-sulfurylase PF01747.17 gi|88604148|ref|YP_504326.1| - 0.0044 16.5 0.0 2.3 7.7 0.0 2.2 2 0 0 2 2 2 2 ATP-sulfurylase FAD_syn PF06574.12 gi|88604148|ref|YP_504326.1| - 0.0071 16.2 0.0 0.015 15.2 0.1 1.4 2 0 0 2 2 2 1 FAD synthetase AIRC PF00731.20 gi|88604149|ref|YP_504327.1| - 1.1e-16 60.7 5.2 2.1e-16 59.9 5.2 1.5 1 0 0 1 1 1 1 AIR carboxylase tRNA-synt_His PF13393.6 gi|88604151|ref|YP_504329.1| - 1.3e-55 188.9 0.0 1.6e-55 188.6 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|88604151|ref|YP_504329.1| - 2.9e-13 50.2 0.0 4.6e-13 49.5 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|88604151|ref|YP_504329.1| - 5.2e-12 45.8 0.2 1.8e-11 44.0 0.1 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|88604151|ref|YP_504329.1| - 0.015 14.4 0.3 1.9 7.5 0.1 2.8 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) PGM_PMM_IV PF00408.20 gi|88604151|ref|YP_504329.1| - 0.021 15.0 0.2 0.055 13.6 0.2 1.7 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain Topo-VIb_trans PF09239.11 gi|88604152|ref|YP_504330.1| - 3.8e-64 215.3 0.0 6.8e-64 214.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|88604152|ref|YP_504330.1| - 3.1e-09 37.0 0.0 5.9e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|88604152|ref|YP_504330.1| - 2.7e-08 34.3 0.0 5.7e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|88604152|ref|YP_504330.1| - 2e-06 27.7 0.0 3.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|88604152|ref|YP_504330.1| - 0.0033 16.2 0.0 0.0062 15.3 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|88604152|ref|YP_504330.1| - 0.022 15.2 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S13/S18 TP6A_N PF04406.14 gi|88604153|ref|YP_504331.1| - 7.8e-14 51.4 0.4 1.8e-13 50.2 0.1 1.7 2 0 0 2 2 2 1 Type IIB DNA topoisomerase Arc_PepC_II PF06847.11 gi|88604154|ref|YP_504332.1| - 3.7e-29 101.1 0.0 3.7e-29 101.1 0.0 2.3 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|88604154|ref|YP_504332.1| - 1.6e-06 28.5 10.3 1.6e-06 28.5 10.3 2.0 2 0 0 2 2 2 1 Type IV leader peptidase family NrsF PF06532.11 gi|88604154|ref|YP_504332.1| - 0.0033 17.2 7.9 0.0033 17.2 7.9 1.7 2 0 0 2 2 2 1 Negative regulator of sigma F DUF4083 PF13314.6 gi|88604154|ref|YP_504332.1| - 4.9 7.2 7.4 1.1 9.2 1.4 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4083) T2SSE PF00437.20 gi|88604155|ref|YP_504333.1| - 3e-13 49.5 0.1 5.5e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|88604155|ref|YP_504333.1| - 9.3e-08 32.6 0.0 2.4e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|88604155|ref|YP_504333.1| - 7.3e-06 26.4 0.0 1.7e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|88604155|ref|YP_504333.1| - 1.3e-05 25.8 0.0 3.8e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|88604155|ref|YP_504333.1| - 2.1e-05 24.3 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|88604155|ref|YP_504333.1| - 7.3e-05 22.7 0.0 0.00026 21.0 0.0 1.9 2 0 0 2 2 1 1 NTPase AAA_14 PF13173.6 gi|88604155|ref|YP_504333.1| - 0.00015 21.8 0.0 0.00029 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain KH_1 PF00013.29 gi|88604155|ref|YP_504333.1| - 0.00015 21.5 0.1 0.00096 18.9 0.1 2.4 2 0 0 2 2 2 1 KH domain AAA_5 PF07728.14 gi|88604155|ref|YP_504333.1| - 0.00042 20.3 0.0 0.00099 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PIN PF01850.21 gi|88604155|ref|YP_504333.1| - 0.00056 20.4 0.0 0.0018 18.8 0.0 1.9 1 0 0 1 1 1 1 PIN domain AAA_28 PF13521.6 gi|88604155|ref|YP_504333.1| - 0.00071 19.9 0.1 0.0026 18.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|88604155|ref|YP_504333.1| - 0.00097 19.5 0.0 0.0024 18.2 0.0 1.7 1 1 0 1 1 1 1 RNA helicase AAA_23 PF13476.6 gi|88604155|ref|YP_504333.1| - 0.0019 18.8 0.0 0.0058 17.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|88604155|ref|YP_504333.1| - 0.0022 17.7 0.0 0.01 15.6 0.0 2.0 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|88604155|ref|YP_504333.1| - 0.0023 18.2 0.0 0.0066 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|88604155|ref|YP_504333.1| - 0.0029 17.6 0.1 0.0064 16.4 0.1 1.5 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|88604155|ref|YP_504333.1| - 0.003 17.3 0.0 0.0061 16.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DnaB_C PF03796.15 gi|88604155|ref|YP_504333.1| - 0.0035 16.7 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain ABC_tran PF00005.27 gi|88604155|ref|YP_504333.1| - 0.0041 17.7 0.0 0.015 15.8 0.0 2.0 1 0 0 1 1 1 1 ABC transporter Rad17 PF03215.15 gi|88604155|ref|YP_504333.1| - 0.0049 16.8 0.0 0.0088 16.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|88604155|ref|YP_504333.1| - 0.0051 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|88604155|ref|YP_504333.1| - 0.0059 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI APS_kinase PF01583.20 gi|88604155|ref|YP_504333.1| - 0.008 16.1 0.0 0.14 12.0 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_25 PF13481.6 gi|88604155|ref|YP_504333.1| - 0.0085 15.7 0.1 0.027 14.0 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|88604155|ref|YP_504333.1| - 0.0094 15.7 0.0 0.027 14.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.22 gi|88604155|ref|YP_504333.1| - 0.011 15.0 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|88604155|ref|YP_504333.1| - 0.017 15.3 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|88604155|ref|YP_504333.1| - 0.022 14.0 0.5 0.035 13.3 0.0 1.5 2 0 0 2 2 1 0 TIP49 P-loop domain KH_2 PF07650.17 gi|88604155|ref|YP_504333.1| - 0.023 14.5 1.1 0.078 12.8 1.1 1.9 1 0 0 1 1 1 0 KH domain ATPase_2 PF01637.18 gi|88604155|ref|YP_504333.1| - 0.024 14.6 0.0 0.064 13.2 0.0 1.7 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|88604155|ref|YP_504333.1| - 0.025 13.9 0.0 0.057 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|88604155|ref|YP_504333.1| - 0.025 14.4 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|88604155|ref|YP_504333.1| - 0.026 14.2 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|88604155|ref|YP_504333.1| - 0.032 13.6 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 KaiC PIN_4 PF13638.6 gi|88604155|ref|YP_504333.1| - 0.036 14.4 0.0 0.076 13.3 0.0 1.6 1 0 0 1 1 1 0 PIN domain AAA_7 PF12775.7 gi|88604155|ref|YP_504333.1| - 0.037 13.5 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|88604155|ref|YP_504333.1| - 0.042 12.9 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|88604155|ref|YP_504333.1| - 0.05 13.9 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|88604155|ref|YP_504333.1| - 0.055 12.9 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PIN_12 PF16289.5 gi|88604155|ref|YP_504333.1| - 0.056 13.9 0.4 2.4 8.6 0.0 3.0 3 0 0 3 3 3 0 PIN domain ATP-synt_ab PF00006.25 gi|88604155|ref|YP_504333.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.19 gi|88604155|ref|YP_504333.1| - 0.068 12.8 0.0 0.85 9.2 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|88604155|ref|YP_504333.1| - 0.089 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|88604155|ref|YP_504333.1| - 0.09 12.9 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|88604155|ref|YP_504333.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DAP3 PF10236.9 gi|88604155|ref|YP_504333.1| - 0.18 11.0 0.0 0.32 10.1 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 tRNA-synt_1 PF00133.22 gi|88604156|ref|YP_504334.1| - 1.7e-52 178.5 0.0 3.3e-46 157.7 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|88604156|ref|YP_504334.1| - 2.6e-21 76.2 0.0 6.1e-21 75.0 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|88604156|ref|YP_504334.1| - 5.3e-21 74.8 0.5 7.7e-08 31.5 0.1 4.1 4 0 0 4 4 4 4 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|88604156|ref|YP_504334.1| - 1.4e-06 27.9 0.0 0.053 12.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|88604156|ref|YP_504334.1| - 6.1e-06 25.9 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|88604156|ref|YP_504334.1| - 0.00051 19.1 0.0 0.34 9.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF5611 PF18446.1 gi|88604157|ref|YP_504335.1| - 3.7e-30 104.8 0.3 4.1e-30 104.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) CorA PF01544.18 gi|88604158|ref|YP_504336.1| - 1.5e-58 198.4 5.9 1.8e-58 198.2 5.9 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein HTH_CodY PF08222.11 gi|88604158|ref|YP_504336.1| - 0.084 12.4 0.1 0.31 10.6 0.2 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain NPCC PF08058.11 gi|88604158|ref|YP_504336.1| - 1.6 8.8 4.5 0.96 9.5 1.9 1.9 2 0 0 2 2 2 0 Nuclear pore complex component UPF0175 PF03683.13 gi|88604159|ref|YP_504337.1| - 1.8e-18 66.0 0.0 2.1e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF2142 PF09913.9 gi|88604160|ref|YP_504338.1| - 0.05 12.5 8.4 0.01 14.7 3.4 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2142) CPP1-like PF11833.8 gi|88604160|ref|YP_504338.1| - 0.13 11.9 13.2 0.18 11.4 6.0 2.1 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Acyl_transf_3 PF01757.22 gi|88604160|ref|YP_504338.1| - 0.32 10.0 15.5 0.11 11.6 3.7 2.1 1 1 1 2 2 2 0 Acyltransferase family DUF2157 PF09925.9 gi|88604160|ref|YP_504338.1| - 0.36 10.6 8.6 2.3 8.0 3.8 2.8 1 1 0 2 2 2 0 Predicted membrane protein (DUF2157) DUF4131 PF13567.6 gi|88604160|ref|YP_504338.1| - 3.3 7.3 12.3 1.3 8.7 2.8 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HTH_3 PF01381.22 gi|88604161|ref|YP_504339.1| - 1.9e-14 53.4 0.0 2.2e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|88604161|ref|YP_504339.1| - 1.6e-09 37.6 0.0 1.7e-09 37.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|88604161|ref|YP_504339.1| - 8.1e-07 29.3 0.0 9.4e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|88604161|ref|YP_504339.1| - 2.7e-05 24.5 0.0 2.9e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|88604161|ref|YP_504339.1| - 0.0019 18.0 0.0 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|88604161|ref|YP_504339.1| - 0.03 14.3 0.1 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain IF3_C PF00707.22 gi|88604161|ref|YP_504339.1| - 0.14 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain Yip1 PF04893.17 gi|88604162|ref|YP_504340.1| - 5.4e-35 120.6 17.8 6.6e-35 120.4 17.8 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|88604162|ref|YP_504340.1| - 1e-05 25.4 17.3 1.8e-05 24.6 17.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) DUF1189 PF06691.11 gi|88604162|ref|YP_504340.1| - 1.2 8.7 20.7 0.41 10.2 14.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1189) CARDB PF07705.11 gi|88604163|ref|YP_504341.1| - 0.00039 20.6 2.6 0.039 14.2 0.0 3.2 3 0 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|88604163|ref|YP_504341.1| - 0.0058 16.9 5.2 0.086 13.2 0.2 3.1 3 0 0 3 3 3 2 Domain of unknown function DUF11 ABC_tran PF00005.27 gi|88604164|ref|YP_504342.1| - 3.1e-33 115.2 0.0 4.7e-33 114.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88604164|ref|YP_504342.1| - 4e-07 30.1 0.0 0.014 15.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604164|ref|YP_504342.1| - 2.2e-06 27.3 0.0 0.026 14.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88604164|ref|YP_504342.1| - 4.6e-05 23.1 0.1 8.7e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|88604164|ref|YP_504342.1| - 0.0001 22.3 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|88604164|ref|YP_504342.1| - 0.00033 20.3 0.0 0.095 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|88604164|ref|YP_504342.1| - 0.00073 18.5 0.0 0.17 10.8 0.0 2.0 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|88604164|ref|YP_504342.1| - 0.00077 19.7 0.1 0.0047 17.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88604164|ref|YP_504342.1| - 0.002 18.5 0.0 0.003 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|88604164|ref|YP_504342.1| - 0.0027 16.8 0.1 0.038 13.1 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|88604164|ref|YP_504342.1| - 0.0098 15.8 0.1 3.4 7.5 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.6 gi|88604164|ref|YP_504342.1| - 0.011 16.2 0.3 0.022 15.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.15 gi|88604164|ref|YP_504342.1| - 0.013 15.4 0.1 0.1 12.5 0.0 2.1 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|88604164|ref|YP_504342.1| - 0.024 14.4 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|88604164|ref|YP_504342.1| - 0.031 14.4 0.6 0.067 13.3 0.2 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase G-alpha PF00503.20 gi|88604164|ref|YP_504342.1| - 0.041 13.0 0.0 0.048 12.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|88604164|ref|YP_504342.1| - 0.044 14.3 0.0 0.17 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|88604164|ref|YP_504342.1| - 0.047 13.9 0.0 0.095 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|88604164|ref|YP_504342.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|88604164|ref|YP_504342.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|88604164|ref|YP_504342.1| - 0.1 12.5 0.1 0.5 10.3 0.1 2.0 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 gi|88604164|ref|YP_504342.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|88604164|ref|YP_504342.1| - 0.11 11.7 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.20 gi|88604164|ref|YP_504342.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|88604164|ref|YP_504342.1| - 0.15 12.2 0.0 0.66 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|88604164|ref|YP_504342.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Dynamin family Cytidylate_kin PF02224.18 gi|88604164|ref|YP_504342.1| - 0.18 11.5 0.3 0.32 10.7 0.2 1.4 1 1 0 1 1 1 0 Cytidylate kinase RNA12 PF10443.9 gi|88604164|ref|YP_504342.1| - 0.2 10.4 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein MacB_PCD PF12704.7 gi|88604165|ref|YP_504343.1| - 1.5e-24 87.5 4.0 1.5e-24 87.5 4.0 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|88604165|ref|YP_504343.1| - 1.1e-11 45.1 4.4 1.1e-11 45.1 4.4 3.0 3 0 0 3 3 3 1 FtsX-like permease family MerT PF02411.15 gi|88604165|ref|YP_504343.1| - 0.084 12.9 3.3 2.3 8.2 0.5 2.6 1 1 1 2 2 2 0 MerT mercuric transport protein NOG1_N PF17835.1 gi|88604166|ref|YP_504344.1| - 2.9e-32 111.8 0.1 4.6e-32 111.2 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|88604166|ref|YP_504344.1| - 1.4e-21 76.0 0.2 3.5e-21 74.7 0.0 1.7 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|88604166|ref|YP_504344.1| - 1e-19 70.7 0.0 2.3e-19 69.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|88604166|ref|YP_504344.1| - 1.9e-10 40.5 0.0 3.5e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|88604166|ref|YP_504344.1| - 0.0013 18.8 0.2 0.064 13.3 0.0 2.4 1 1 1 2 2 2 1 Dynamin family RsgA_GTPase PF03193.16 gi|88604166|ref|YP_504344.1| - 0.01 15.7 0.0 0.21 11.5 0.0 2.6 1 1 1 2 2 2 0 RsgA GTPase Arf PF00025.21 gi|88604166|ref|YP_504344.1| - 0.011 15.2 0.0 0.053 13.0 0.0 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|88604166|ref|YP_504344.1| - 0.031 13.7 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit TyeA PF09059.10 gi|88604166|ref|YP_504344.1| - 0.063 13.4 0.0 0.84 9.8 0.0 2.5 2 0 0 2 2 2 0 TyeA AAA_18 PF13238.6 gi|88604166|ref|YP_504344.1| - 0.093 13.3 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|88604166|ref|YP_504344.1| - 0.1 11.5 0.0 16 4.4 0.0 2.7 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|88604166|ref|YP_504344.1| - 0.17 11.5 0.0 0.94 9.1 0.0 2.0 1 1 0 1 1 1 0 Ras family TPR_2 PF07719.17 gi|88604167|ref|YP_504345.1| - 4.4e-24 82.6 0.8 7.9e-07 28.7 0.0 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88604167|ref|YP_504345.1| - 6e-22 76.0 0.2 2.2e-06 27.4 0.0 4.1 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88604167|ref|YP_504345.1| - 3.8e-20 70.8 0.8 1.1e-05 25.1 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604167|ref|YP_504345.1| - 6.1e-16 57.8 0.1 2.1e-05 24.1 0.0 3.2 2 1 1 3 3 3 3 TPR repeat TPR_16 PF13432.6 gi|88604167|ref|YP_504345.1| - 3.4e-15 56.4 0.2 1.4e-08 35.3 0.0 2.3 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604167|ref|YP_504345.1| - 3.4e-14 53.1 0.1 1.2e-06 28.9 0.0 2.8 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88604167|ref|YP_504345.1| - 1.3e-12 47.7 0.0 7.1e-05 22.9 0.0 2.6 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604167|ref|YP_504345.1| - 2.2e-12 46.7 0.4 0.013 16.2 0.0 4.0 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604167|ref|YP_504345.1| - 2e-11 43.4 0.0 0.00086 19.5 0.0 3.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604167|ref|YP_504345.1| - 5.4e-11 42.6 1.4 0.00014 22.1 0.2 2.9 2 2 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604167|ref|YP_504345.1| - 7e-11 41.4 0.1 0.022 14.7 0.0 3.5 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604167|ref|YP_504345.1| - 3.6e-10 39.8 2.0 0.012 16.2 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604167|ref|YP_504345.1| - 3e-08 33.8 0.0 4.3e-07 30.1 0.0 2.3 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|88604167|ref|YP_504345.1| - 2.3e-07 30.1 0.0 3.8e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|88604167|ref|YP_504345.1| - 4.2e-06 26.5 2.3 0.082 12.8 0.0 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88604167|ref|YP_504345.1| - 9.2e-06 25.5 0.9 0.00058 19.6 0.1 2.8 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|88604167|ref|YP_504345.1| - 2.6e-05 24.3 1.1 0.9 9.6 0.1 3.6 1 1 1 2 2 2 2 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|88604167|ref|YP_504345.1| - 2.7e-05 24.4 0.1 1.9 9.3 0.0 3.7 4 0 0 4 4 3 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|88604167|ref|YP_504345.1| - 3.5e-05 23.8 0.1 0.13 12.2 0.0 2.8 1 1 1 3 3 3 3 Putative TPR-like repeat BTAD PF03704.17 gi|88604167|ref|YP_504345.1| - 0.0001 22.8 0.0 0.35 11.3 0.0 2.0 2 0 0 2 2 2 2 Bacterial transcriptional activator domain PPR PF01535.20 gi|88604167|ref|YP_504345.1| - 0.00036 20.6 1.8 10 6.6 0.0 4.1 4 0 0 4 4 4 0 PPR repeat SNAP PF14938.6 gi|88604167|ref|YP_504345.1| - 0.011 15.2 0.0 1.6 8.1 0.0 2.2 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP MIT PF04212.18 gi|88604167|ref|YP_504345.1| - 0.011 15.8 0.4 4.5 7.4 0.1 3.2 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|88604167|ref|YP_504345.1| - 0.017 15.3 0.0 4.2 7.7 0.0 2.9 2 1 0 2 2 2 0 MIT domain of nuclear receptor-binding factor 2 SHNi-TPR PF10516.9 gi|88604167|ref|YP_504345.1| - 0.023 14.2 2.7 0.21 11.1 0.0 2.8 3 0 0 3 3 3 0 SHNi-TPR TPR_MalT PF17874.1 gi|88604167|ref|YP_504345.1| - 0.026 13.9 0.3 0.29 10.5 0.2 2.1 1 1 1 2 2 2 0 MalT-like TPR region TPR_15 PF13429.6 gi|88604167|ref|YP_504345.1| - 0.036 13.3 0.0 0.081 12.1 0.0 1.4 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|88604167|ref|YP_504345.1| - 0.038 14.0 2.6 0.07 13.1 0.1 2.6 4 0 0 4 4 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|88604167|ref|YP_504345.1| - 0.045 13.4 0.0 6.1 6.5 0.0 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_20 PF14561.6 gi|88604167|ref|YP_504345.1| - 0.072 13.4 0.0 5 7.5 0.0 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPD52 PF04201.15 gi|88604167|ref|YP_504345.1| - 0.09 12.4 0.0 0.46 10.1 0.0 1.8 2 0 0 2 2 2 0 Tumour protein D52 family Gla PF00594.20 gi|88604167|ref|YP_504345.1| - 0.4 10.9 3.0 33 4.8 0.0 3.1 3 0 0 3 3 3 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain PspC PF04024.12 gi|88604168|ref|YP_504346.1| - 1.4e-23 82.5 4.4 1.5e-23 82.3 4.4 1.0 1 0 0 1 1 1 1 PspC domain HrcA_DNA-bdg PF03444.15 gi|88604169|ref|YP_504347.1| - 3.8e-36 122.6 0.1 7.9e-36 121.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|88604169|ref|YP_504347.1| - 1.8e-24 85.9 0.5 6.9e-11 42.4 0.1 2.5 2 0 0 2 2 2 2 CBS domain HTH_11 PF08279.12 gi|88604169|ref|YP_504347.1| - 1.7e-05 24.7 0.0 3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|88604169|ref|YP_504347.1| - 0.00012 22.3 0.0 0.00034 20.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator N6_N4_Mtase PF01555.18 gi|88604170|ref|YP_504348.1| - 2.3e-28 99.5 0.0 2.3e-28 99.5 0.0 1.4 2 0 0 2 2 2 1 DNA methylase MTS PF05175.14 gi|88604170|ref|YP_504348.1| - 0.034 13.7 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain UPF0020 PF01170.18 gi|88604170|ref|YP_504348.1| - 0.036 13.8 0.0 0.094 12.4 0.0 1.7 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|88604170|ref|YP_504348.1| - 0.04 13.2 0.0 1.9 7.7 0.0 2.2 2 0 0 2 2 2 0 N-6 DNA Methylase DUF2385 PF09539.10 gi|88604170|ref|YP_504348.1| - 0.26 11.9 1.0 0.57 10.7 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) PRC PF05239.16 gi|88604171|ref|YP_504349.1| - 2e-12 47.0 0.1 2.4e-12 46.8 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF903 PF06004.12 gi|88604171|ref|YP_504349.1| - 0.046 13.6 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) Hydrolase_3 PF08282.12 gi|88604172|ref|YP_504350.1| - 2.6e-32 112.6 0.1 9.2e-16 58.3 0.0 2.0 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|88604172|ref|YP_504350.1| - 5.5e-10 39.9 2.0 0.00011 22.6 0.0 3.1 1 1 2 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|88604172|ref|YP_504350.1| - 5.1e-09 36.0 0.0 8.9e-07 28.7 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|88604172|ref|YP_504350.1| - 3.8e-05 24.2 1.5 0.24 11.8 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|88604172|ref|YP_504350.1| - 0.0003 20.9 1.0 0.02 15.0 0.0 2.5 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|88604172|ref|YP_504350.1| - 0.00081 19.5 0.0 0.0018 18.3 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF3871 PF12987.7 gi|88604172|ref|YP_504350.1| - 0.032 13.0 0.0 0.047 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3871) Hydrolase_like PF13242.6 gi|88604172|ref|YP_504350.1| - 0.036 14.1 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 HAD-hyrolase-like Arm_3 PF16186.5 gi|88604172|ref|YP_504350.1| - 0.041 13.5 0.1 0.2 11.3 0.0 2.2 3 0 0 3 3 3 0 Atypical Arm repeat Pox_MCEL PF03291.16 gi|88604172|ref|YP_504350.1| - 0.2 10.7 0.0 0.99 8.4 0.0 1.8 1 1 1 2 2 2 0 mRNA capping enzyme Rad51 PF08423.11 gi|88604173|ref|YP_504351.1| - 1.9e-80 269.8 0.0 2.4e-80 269.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|88604173|ref|YP_504351.1| - 5.8e-26 90.9 0.3 4.9e-12 46.3 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|88604173|ref|YP_504351.1| - 7e-15 55.0 0.0 4.6e-07 30.0 0.0 2.9 3 0 0 3 3 2 2 Pathogenicity locus HHH_2 PF12826.7 gi|88604173|ref|YP_504351.1| - 5.4e-13 48.8 0.0 1.8e-07 31.1 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|88604173|ref|YP_504351.1| - 3.3e-11 42.8 0.0 6.8e-05 22.6 0.0 3.4 2 2 1 3 3 3 2 Fingers domain of DNA polymerase lambda AAA_25 PF13481.6 gi|88604173|ref|YP_504351.1| - 1.3e-10 41.2 0.0 4.5e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|88604173|ref|YP_504351.1| - 7.7e-10 38.5 0.0 1.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 KaiC IMS_HHH PF11798.8 gi|88604173|ref|YP_504351.1| - 1e-08 35.0 0.0 0.004 17.4 0.0 3.3 2 0 0 2 2 2 2 IMS family HHH motif RecA PF00154.21 gi|88604173|ref|YP_504351.1| - 2.6e-07 30.4 0.0 1.3e-06 28.1 0.0 1.8 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH PF00633.23 gi|88604173|ref|YP_504351.1| - 3.6e-07 29.7 3.8 0.012 15.5 0.0 3.8 4 0 0 4 4 4 2 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|88604173|ref|YP_504351.1| - 6.7e-07 29.6 0.0 0.038 14.2 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4332) HHH_8 PF14716.6 gi|88604173|ref|YP_504351.1| - 1.9e-06 28.1 1.4 0.24 11.8 0.0 4.2 5 0 0 5 5 4 2 Helix-hairpin-helix domain BAF PF02961.14 gi|88604173|ref|YP_504351.1| - 7e-05 23.2 0.0 0.72 10.3 0.0 2.7 2 0 0 2 2 2 2 Barrier to autointegration factor HHH_3 PF12836.7 gi|88604173|ref|YP_504351.1| - 0.0011 19.2 0.0 31 4.9 0.0 4.2 4 0 0 4 4 4 0 Helix-hairpin-helix motif LytR_C PF13399.6 gi|88604173|ref|YP_504351.1| - 0.0014 19.5 0.4 1.4 10.0 0.1 3.2 4 0 0 4 4 3 1 LytR cell envelope-related transcriptional attenuator AAA_24 PF13479.6 gi|88604173|ref|YP_504351.1| - 0.0035 17.1 0.0 0.01 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|88604173|ref|YP_504351.1| - 0.0083 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea 5_3_exonuc PF01367.20 gi|88604173|ref|YP_504351.1| - 0.017 15.7 0.5 3 8.5 0.1 3.2 2 2 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold DUF3701 PF12482.8 gi|88604173|ref|YP_504351.1| - 0.031 14.3 0.3 2.7 8.1 0.0 2.9 2 1 0 2 2 2 0 Phage integrase protein TfoX_C PF04994.13 gi|88604173|ref|YP_504351.1| - 0.051 13.7 0.0 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 TfoX C-terminal domain Elong_Iki1 PF10483.9 gi|88604173|ref|YP_504351.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Elongator subunit Iki1 tRNA_anti-codon PF01336.25 gi|88604174|ref|YP_504352.1| - 8.4e-19 67.3 0.1 6e-09 35.8 0.0 4.3 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|88604174|ref|YP_504352.1| - 4e-06 26.7 0.0 0.048 13.4 0.0 2.4 2 0 0 2 2 2 2 Cell division control protein 24, OB domain 3 tRNA_anti_2 PF13742.6 gi|88604174|ref|YP_504352.1| - 0.08 13.2 0.0 3 8.1 0.0 3.2 4 0 0 4 4 4 0 OB-fold nucleic acid binding domain POT1PC PF16686.5 gi|88604174|ref|YP_504352.1| - 0.15 11.9 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 ssDNA-binding domain of telomere protection protein Orn_Arg_deC_N PF02784.16 gi|88604175|ref|YP_504353.1| - 7.9e-54 182.6 0.0 1.1e-53 182.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|88604175|ref|YP_504353.1| - 1.3e-25 89.5 0.0 1.5e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|88604175|ref|YP_504353.1| - 5e-10 39.4 0.1 1.2e-09 38.1 0.1 1.7 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain DUF5616 PF18481.1 gi|88604175|ref|YP_504353.1| - 0.17 12.2 0.0 0.59 10.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5616) Aminotran_1_2 PF00155.21 gi|88604176|ref|YP_504354.1| - 4.5e-67 226.8 0.0 5e-67 226.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|88604176|ref|YP_504354.1| - 0.0032 16.1 0.0 0.0053 15.3 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|88604176|ref|YP_504354.1| - 0.024 13.6 0.0 0.036 13.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Cache_3-Cache_2 PF17201.4 gi|88604177|ref|YP_504355.1| - 1.7e-81 273.7 2.9 1.7e-81 273.7 2.9 3.1 3 1 1 4 4 4 1 Cache 3/Cache 2 fusion domain MCPsignal PF00015.21 gi|88604177|ref|YP_504355.1| - 6.4e-43 146.5 59.3 3.2e-42 144.3 26.1 4.1 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|88604177|ref|YP_504355.1| - 1.4e-36 125.2 2.2 1.4e-36 125.2 2.2 2.5 2 0 0 2 2 2 1 Single cache domain 3 dCache_1 PF02743.18 gi|88604177|ref|YP_504355.1| - 1.5e-13 51.2 2.0 1.5e-13 51.2 2.0 3.4 2 1 1 3 3 2 1 Cache domain dCache_2 PF08269.11 gi|88604177|ref|YP_504355.1| - 5.4e-13 48.8 0.1 5.4e-13 48.8 0.1 3.4 3 1 1 4 4 4 1 Cache domain HAMP PF00672.25 gi|88604177|ref|YP_504355.1| - 2.6e-11 43.7 0.6 2.3e-08 34.3 0.0 4.7 4 1 0 4 4 4 1 HAMP domain sCache_3_2 PF17203.4 gi|88604177|ref|YP_504355.1| - 5.5e-11 42.8 3.0 1.4e-09 38.2 0.3 3.7 3 1 1 4 4 3 1 Single cache domain 3 sCache_2 PF17200.4 gi|88604177|ref|YP_504355.1| - 4.5e-10 39.6 0.1 4.5e-10 39.6 0.1 3.1 2 1 2 4 4 4 1 Single Cache domain 2 DUF948 PF06103.11 gi|88604177|ref|YP_504355.1| - 2.8e-07 30.7 39.6 0.0063 16.7 1.0 7.5 5 2 2 7 7 7 4 Bacterial protein of unknown function (DUF948) dCache_3 PF14827.6 gi|88604177|ref|YP_504355.1| - 8.2e-05 22.4 0.0 0.00029 20.6 0.0 2.0 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase DUF1664 PF07889.12 gi|88604177|ref|YP_504355.1| - 0.0025 17.8 31.7 0.25 11.4 4.3 5.4 3 2 3 6 6 6 4 Protein of unknown function (DUF1664) HAMP_N3 PF18575.1 gi|88604177|ref|YP_504355.1| - 0.023 14.3 0.1 1.4 8.6 0.0 3.4 3 0 0 3 3 2 0 HAMP N-terminal domain 3 Mce4_CUP1 PF11887.8 gi|88604177|ref|YP_504355.1| - 0.024 14.1 0.6 0.024 14.1 0.6 2.7 2 1 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Dicistro_VP4 PF11492.8 gi|88604177|ref|YP_504355.1| - 0.058 13.4 0.7 7.6 6.6 0.1 3.1 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 AAA_13 PF13166.6 gi|88604177|ref|YP_504355.1| - 0.064 11.9 25.4 0.079 11.6 13.3 2.3 1 1 1 2 2 2 0 AAA domain LBP_BPI_CETP_C PF02886.17 gi|88604177|ref|YP_504355.1| - 0.15 11.5 4.0 0.17 11.3 0.6 2.3 2 0 0 2 2 2 0 LBP / BPI / CETP family, C-terminal domain BLOC1_2 PF10046.9 gi|88604177|ref|YP_504355.1| - 0.72 10.2 22.6 13 6.2 3.1 5.3 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlgN PF05130.12 gi|88604177|ref|YP_504355.1| - 0.8 10.2 15.8 2.2 8.8 1.6 3.1 1 1 1 3 3 3 0 FlgN protein CREPT PF16566.5 gi|88604177|ref|YP_504355.1| - 1.6 8.9 11.0 0.097 12.8 1.7 2.8 2 2 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Sigma70_ner PF04546.13 gi|88604177|ref|YP_504355.1| - 1.6 8.6 12.7 5.8 6.7 5.6 3.5 2 1 0 3 3 3 0 Sigma-70, non-essential region ATG16 PF08614.11 gi|88604177|ref|YP_504355.1| - 2.3 8.4 17.0 1.1 9.5 4.1 3.1 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.12 gi|88604177|ref|YP_504355.1| - 2.3 8.3 22.9 1.6 8.8 5.0 3.7 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein Filament PF00038.21 gi|88604177|ref|YP_504355.1| - 4.2 6.9 18.8 6.7 6.2 4.4 3.0 2 1 0 2 2 2 0 Intermediate filament protein FliJ PF02050.16 gi|88604177|ref|YP_504355.1| - 5.7 7.2 9.9 3.9 7.7 1.2 2.6 2 0 0 2 2 2 0 Flagellar FliJ protein HMMR_N PF15905.5 gi|88604177|ref|YP_504355.1| - 6.4 6.2 16.3 8.2 5.8 1.7 2.3 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal FH2 PF02181.23 gi|88604177|ref|YP_504355.1| - 7.4 5.6 12.6 4.7 6.2 3.8 2.3 2 0 0 2 2 2 0 Formin Homology 2 Domain Spectrin PF00435.21 gi|88604177|ref|YP_504355.1| - 8.4 6.9 12.9 0.96 10.0 1.3 3.7 3 2 1 4 4 3 0 Spectrin repeat APH PF01636.23 gi|88604178|ref|YP_504356.1| - 2.1e-16 60.6 0.0 3.9e-16 59.7 0.0 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|88604178|ref|YP_504356.1| - 4.3e-05 23.2 0.0 0.094 12.3 0.0 2.1 2 0 0 2 2 2 2 RIO1 family DUF1679 PF07914.11 gi|88604178|ref|YP_504356.1| - 0.00025 20.0 0.0 0.0036 16.2 0.0 2.0 1 1 0 2 2 2 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|88604178|ref|YP_504356.1| - 0.0045 16.3 0.0 0.0071 15.7 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 gi|88604178|ref|YP_504356.1| - 0.038 13.6 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Choline/ethanolamine kinase PAS PF00989.25 gi|88604180|ref|YP_504358.1| - 4.7e-19 68.5 0.3 1.6e-05 24.8 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|88604180|ref|YP_504358.1| - 2.4e-15 56.6 7.2 0.00038 20.7 0.1 4.7 4 1 0 4 4 4 3 PAS domain PAS_8 PF13188.7 gi|88604180|ref|YP_504358.1| - 3.1e-15 55.8 1.0 2e-06 27.7 0.0 4.2 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.10 gi|88604180|ref|YP_504358.1| - 9.8e-11 41.9 0.0 0.18 12.1 0.0 5.0 6 0 0 6 6 6 3 PAS fold PAS_7 PF12860.7 gi|88604180|ref|YP_504358.1| - 0.00025 21.2 0.5 0.0053 16.9 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.12 gi|88604180|ref|YP_504358.1| - 0.0013 19.0 0.0 0.0063 16.8 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.6 gi|88604180|ref|YP_504358.1| - 0.0051 17.4 0.3 3.2 8.4 0.1 3.4 3 1 0 3 3 3 1 PAS domain sCache_3_3 PF17202.4 gi|88604180|ref|YP_504358.1| - 0.071 13.5 0.1 1.1 9.8 0.0 2.6 2 0 0 2 2 2 0 Single cache domain 3 MCPsignal PF00015.21 gi|88604181|ref|YP_504359.1| - 9e-43 146.1 18.8 9e-43 146.1 18.8 4.4 1 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|88604181|ref|YP_504359.1| - 0.00039 20.6 23.5 0.39 11.0 4.0 5.2 3 2 2 5 5 4 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|88604181|ref|YP_504359.1| - 0.0022 18.4 0.2 3.5 8.1 0.0 4.7 3 1 1 4 4 4 1 HAMP domain HAMP_N3 PF18575.1 gi|88604181|ref|YP_504359.1| - 0.02 14.5 0.3 0.61 9.7 0.0 3.7 4 0 0 4 4 4 0 HAMP N-terminal domain 3 Syntaxin_2 PF14523.6 gi|88604181|ref|YP_504359.1| - 0.051 14.0 15.2 1.1 9.6 0.1 5.0 3 2 1 4 4 4 0 Syntaxin-like protein RPW8 PF05659.11 gi|88604181|ref|YP_504359.1| - 0.069 12.8 5.0 2.6 7.8 0.2 4.3 5 1 1 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DASH_Dad2 PF08654.10 gi|88604181|ref|YP_504359.1| - 0.082 13.3 17.8 0.097 13.1 2.6 4.3 2 2 2 4 4 4 0 DASH complex subunit Dad2 Laminin_II PF06009.12 gi|88604181|ref|YP_504359.1| - 0.1 12.6 31.7 0.66 10.0 1.6 5.1 3 2 1 5 5 5 0 Laminin Domain II Ran-binding PF05508.11 gi|88604181|ref|YP_504359.1| - 0.11 11.5 10.4 0.14 11.1 5.9 2.4 2 0 0 2 2 2 0 RanGTP-binding protein DUF1128 PF06569.11 gi|88604181|ref|YP_504359.1| - 0.12 12.4 2.1 2.8 8.0 0.3 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1128) BLOC1_2 PF10046.9 gi|88604181|ref|YP_504359.1| - 0.14 12.5 18.6 1.5 9.1 0.3 5.0 4 1 2 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HisKA_2 PF07568.12 gi|88604181|ref|YP_504359.1| - 0.21 11.7 5.1 0.72 10.0 0.3 3.5 2 2 1 3 3 3 0 Histidine kinase Dynamin_M PF01031.20 gi|88604181|ref|YP_504359.1| - 0.23 10.7 5.2 0.18 11.0 3.1 1.8 2 0 0 2 2 2 0 Dynamin central region TrmB PF01978.19 gi|88604181|ref|YP_504359.1| - 0.75 9.7 3.5 24 4.9 0.1 3.0 2 1 1 3 3 2 0 Sugar-specific transcriptional regulator TrmB Sec34 PF04136.15 gi|88604181|ref|YP_504359.1| - 1.3 8.9 9.5 19 5.1 0.1 4.0 3 1 1 4 4 4 0 Sec34-like family Spc7 PF08317.11 gi|88604181|ref|YP_504359.1| - 1.3 7.8 13.5 5.6 5.8 8.2 2.8 2 0 0 2 2 2 0 Spc7 kinetochore protein Serine_rich PF08824.10 gi|88604181|ref|YP_504359.1| - 1.9 8.5 9.7 6.3 6.8 0.1 3.8 3 1 1 4 4 4 0 Serine rich protein interaction domain ATG16 PF08614.11 gi|88604181|ref|YP_504359.1| - 2.4 8.3 9.8 0.91 9.7 2.9 2.3 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) NPV_P10 PF05531.12 gi|88604181|ref|YP_504359.1| - 2.6 8.6 15.7 5.1 7.6 0.3 5.4 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF1054 PF06335.12 gi|88604181|ref|YP_504359.1| - 3 7.7 5.8 0.36 10.7 0.8 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1054) TMPIT PF07851.13 gi|88604181|ref|YP_504359.1| - 3.2 6.9 14.7 9 5.4 0.5 3.7 3 1 1 4 4 4 0 TMPIT-like protein Tropomyosin_1 PF12718.7 gi|88604181|ref|YP_504359.1| - 4.7 7.4 12.2 9.9 6.3 0.7 3.6 2 2 1 3 3 3 0 Tropomyosin like TBCC_N PF16752.5 gi|88604181|ref|YP_504359.1| - 5.1 7.6 13.5 0.95 9.9 1.2 4.0 3 2 3 6 6 5 0 Tubulin-specific chaperone C N-terminal domain Cauli_AT PF03233.13 gi|88604181|ref|YP_504359.1| - 5.1 7.0 12.5 3.3 7.6 0.3 3.6 3 1 1 4 4 4 0 Aphid transmission protein Syntaxin-6_N PF09177.11 gi|88604181|ref|YP_504359.1| - 5.4 7.6 18.0 10 6.8 0.9 4.6 4 3 0 4 4 4 0 Syntaxin 6, N-terminal V-SNARE PF05008.15 gi|88604181|ref|YP_504359.1| - 5.9 7.4 7.4 2.8 8.4 1.9 3.3 2 1 1 3 3 2 0 Vesicle transport v-SNARE protein N-terminus Spectrin PF00435.21 gi|88604181|ref|YP_504359.1| - 7.6 7.1 8.0 52 4.4 1.1 3.7 3 2 0 4 4 4 0 Spectrin repeat Imm7 PF15585.6 gi|88604181|ref|YP_504359.1| - 7.9 6.8 7.1 3.7 7.8 0.2 3.3 2 1 1 3 3 3 0 Immunity protein 7 Uso1_p115_C PF04871.13 gi|88604181|ref|YP_504359.1| - 9.3 6.6 17.6 0.14 12.5 0.5 3.4 2 1 1 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region PKD PF00801.20 gi|88604182|ref|YP_504360.1| - 3.3e-32 110.1 15.9 6.9e-12 45.0 1.8 4.0 4 0 0 4 4 4 3 PKD domain PKD_3 PF16820.5 gi|88604182|ref|YP_504360.1| - 0.00099 18.8 0.0 0.56 10.0 0.0 3.4 3 0 0 3 3 3 2 PKD-like domain DUF3467 PF11950.8 gi|88604183|ref|YP_504361.1| - 2.3e-16 59.7 0.0 2.7e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) SipA_VBS PF17985.1 gi|88604183|ref|YP_504361.1| - 0.051 13.5 0.4 0.12 12.3 0.4 1.6 1 0 0 1 1 1 0 SipA vinculin binding site HTH_36 PF13730.6 gi|88604184|ref|YP_504362.1| - 0.0012 18.8 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|88604184|ref|YP_504362.1| - 0.029 14.2 0.1 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|88604184|ref|YP_504362.1| - 0.03 14.2 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|88604184|ref|YP_504362.1| - 0.076 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4007 PF13182.6 gi|88604184|ref|YP_504362.1| - 0.084 12.0 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4007) DUF2250 PF10007.9 gi|88604184|ref|YP_504362.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RP-C PF03428.13 gi|88604184|ref|YP_504362.1| - 0.12 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Phage_rep_org_N PF09681.10 gi|88604184|ref|YP_504362.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Ig_2 PF13895.6 gi|88604186|ref|YP_504364.1| - 0.047 14.0 0.0 0.085 13.2 0.0 1.4 1 0 0 1 1 1 0 Immunoglobulin domain DD_K PF12121.8 gi|88604186|ref|YP_504364.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Dermaseptin MarR_2 PF12802.7 gi|88604188|ref|YP_504366.1| - 0.011 15.6 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 0 MarR family AAA_29 PF13555.6 gi|88604188|ref|YP_504366.1| - 0.013 15.3 0.1 0.039 13.7 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain zf-SNAP50_C PF12251.8 gi|88604188|ref|YP_504366.1| - 0.75 9.4 3.5 1 9.0 0.4 2.2 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal DUF4079 PF13301.6 gi|88604189|ref|YP_504367.1| - 0.031 14.4 0.0 0.038 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) Mrr_cat PF04471.12 gi|88604189|ref|YP_504367.1| - 0.071 13.1 0.0 0.09 12.8 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease PSD5 PF07637.11 gi|88604190|ref|YP_504368.1| - 0.17 12.2 0.0 0.28 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1595) DUF262 PF03235.14 gi|88604191|ref|YP_504369.1| - 2.4e-32 112.9 0.1 5.7e-32 111.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF262 HNH_4 PF13395.6 gi|88604191|ref|YP_504369.1| - 0.026 14.4 0.0 0.063 13.2 0.0 1.7 1 0 0 1 1 1 0 HNH endonuclease AAA_14 PF13173.6 gi|88604192|ref|YP_504370.1| - 4.6e-34 117.3 0.5 1.1e-33 116.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|88604192|ref|YP_504370.1| - 2.8e-09 37.1 0.2 5.7e-09 36.2 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|88604192|ref|YP_504370.1| - 0.0049 16.8 0.3 0.032 14.1 0.0 2.4 1 1 2 3 3 3 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|88604192|ref|YP_504370.1| - 0.041 14.2 0.1 2 8.7 0.0 2.8 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|88604192|ref|YP_504370.1| - 0.1 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|88604192|ref|YP_504370.1| - 0.13 12.6 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase SelR PF01641.18 gi|88604193|ref|YP_504371.1| - 2.7e-46 156.6 0.0 3.2e-46 156.3 0.0 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|88604193|ref|YP_504371.1| - 0.013 15.7 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly HATPase_c PF02518.26 gi|88604194|ref|YP_504372.1| - 8.6e-12 45.6 0.1 2e-11 44.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|88604194|ref|YP_504372.1| - 3e-05 24.3 0.1 0.032 14.6 0.1 3.2 2 1 0 2 2 2 1 HAMP domain DUF2937 PF11157.8 gi|88604194|ref|YP_504372.1| - 0.0016 18.2 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2937) HATPase_c_3 PF13589.6 gi|88604194|ref|YP_504372.1| - 0.0026 17.6 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|88604194|ref|YP_504372.1| - 0.035 13.8 0.2 0.1 12.3 0.2 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|88604194|ref|YP_504372.1| - 0.049 13.7 0.4 0.3 11.2 0.0 2.5 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|88604194|ref|YP_504372.1| - 0.049 13.6 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain KIP1 PF07765.12 gi|88604194|ref|YP_504372.1| - 0.36 11.0 1.3 5.3 7.2 0.0 3.1 4 0 0 4 4 4 0 KIP1-like protein V4R PF02830.18 gi|88604195|ref|YP_504373.1| - 3.2e-14 52.7 0.4 4.7e-14 52.1 0.4 1.3 1 0 0 1 1 1 1 V4R domain Response_reg PF00072.24 gi|88604196|ref|YP_504374.1| - 9.4e-21 74.1 0.0 1.7e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88604196|ref|YP_504374.1| - 1.8e-13 50.7 0.0 1.7e-07 31.5 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS PF00989.25 gi|88604196|ref|YP_504374.1| - 7e-11 42.1 0.0 8.2e-07 29.0 0.0 3.3 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|88604196|ref|YP_504374.1| - 2e-09 37.6 0.0 5.8e-06 26.5 0.0 3.0 2 1 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|88604196|ref|YP_504374.1| - 2.7e-05 24.0 0.0 0.2 11.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|88604196|ref|YP_504374.1| - 0.11 12.8 0.0 0.95 9.8 0.0 2.6 2 1 0 2 2 2 0 PAS fold Response_reg PF00072.24 gi|88604197|ref|YP_504375.1| - 8.2e-22 77.5 0.0 2.1e-21 76.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88604197|ref|YP_504375.1| - 9e-19 67.8 0.0 2.5e-11 43.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88604197|ref|YP_504375.1| - 4.6e-18 64.8 0.1 1.5e-09 37.7 0.0 3.1 2 1 1 3 3 3 2 PAS domain PAS_9 PF13426.7 gi|88604197|ref|YP_504375.1| - 9.1e-14 51.6 0.1 2.6e-10 40.5 0.1 3.5 3 1 0 3 3 3 1 PAS domain PAS PF00989.25 gi|88604197|ref|YP_504375.1| - 2.1e-13 50.3 0.0 1.1e-11 44.7 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|88604197|ref|YP_504375.1| - 1.2e-07 31.9 0.0 4.1e-06 27.0 0.0 3.1 4 0 0 4 4 4 1 PAS fold PAS_7 PF12860.7 gi|88604197|ref|YP_504375.1| - 4.2e-07 30.1 0.0 0.085 13.0 0.0 3.8 2 1 0 2 2 2 2 PAS fold DUF3970 PF13113.6 gi|88604197|ref|YP_504375.1| - 0.18 12.0 0.5 1.4 9.1 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3970) eIF-1a PF01176.19 gi|88604198|ref|YP_504376.1| - 2.5e-20 72.1 0.3 5.7e-20 70.9 0.2 1.6 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Radical_SAM PF04055.21 gi|88604199|ref|YP_504377.1| - 2.9e-11 44.0 0.3 5.6e-11 43.1 0.3 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF3606 PF12244.8 gi|88604199|ref|YP_504377.1| - 0.065 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) CarboxypepD_reg PF13620.6 gi|88604200|ref|YP_504378.1| - 0.0023 18.2 0.1 0.0031 17.7 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain dCMP_cyt_deam_1 PF00383.23 gi|88604201|ref|YP_504379.1| - 3.4e-21 75.0 0.0 6e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|88604201|ref|YP_504379.1| - 3.5e-19 68.9 0.0 5.2e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase Cupin_2 PF07883.11 gi|88604201|ref|YP_504379.1| - 1.3e-11 44.0 0.1 2.5e-11 43.1 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|88604201|ref|YP_504379.1| - 2.5e-07 30.4 0.0 4.2e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|88604201|ref|YP_504379.1| - 2e-05 24.5 0.0 3.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|88604201|ref|YP_504379.1| - 0.00071 19.5 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain SNAD4 PF18750.1 gi|88604201|ref|YP_504379.1| - 0.0029 17.7 0.0 0.0058 16.7 0.0 1.4 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 Cupin_3 PF05899.12 gi|88604201|ref|YP_504379.1| - 0.0043 16.7 0.0 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Bd3614-deam PF14439.6 gi|88604201|ref|YP_504379.1| - 0.042 13.9 1.2 0.89 9.6 0.6 2.2 1 1 1 2 2 2 0 Bd3614-like deaminase NAD1 PF18778.1 gi|88604201|ref|YP_504379.1| - 0.22 11.6 0.0 0.41 10.7 0.0 1.4 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 Sod_Fe_C PF02777.18 gi|88604202|ref|YP_504380.1| - 2.1e-32 111.3 0.5 2.9e-32 110.9 0.1 1.4 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|88604202|ref|YP_504380.1| - 2.1e-27 95.4 0.5 3.9e-27 94.6 0.5 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain MCPsignal PF00015.21 gi|88604203|ref|YP_504381.1| - 3.9e-43 147.2 53.4 7.9e-43 146.2 20.1 5.9 3 1 3 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|88604203|ref|YP_504381.1| - 5.7e-06 26.3 0.0 2e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 PAS fold HAMP PF00672.25 gi|88604203|ref|YP_504381.1| - 9e-06 26.0 5.6 4.4 7.8 0.0 6.1 4 2 2 6 6 5 1 HAMP domain AAA_13 PF13166.6 gi|88604203|ref|YP_504381.1| - 2e-05 23.5 16.8 0.38 9.3 12.3 3.1 1 1 1 3 3 3 2 AAA domain PAS_8 PF13188.7 gi|88604203|ref|YP_504381.1| - 0.0046 16.9 0.0 0.018 15.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|88604203|ref|YP_504381.1| - 0.011 15.9 0.0 0.031 14.5 0.0 1.8 1 0 0 1 1 1 0 PAS fold Hemerythrin PF01814.23 gi|88604203|ref|YP_504381.1| - 0.033 14.8 2.0 0.76 10.4 0.1 3.9 3 1 0 3 3 3 0 Hemerythrin HHE cation binding domain HATPase_c_4 PF13749.6 gi|88604203|ref|YP_504381.1| - 0.041 14.0 0.1 0.28 11.3 0.0 2.6 2 0 0 2 2 2 0 Putative ATP-dependent DNA helicase recG C-terminal DUF948 PF06103.11 gi|88604203|ref|YP_504381.1| - 0.21 11.9 30.7 11 6.4 7.3 7.3 4 2 2 7 7 6 0 Bacterial protein of unknown function (DUF948) AIP3 PF03915.13 gi|88604203|ref|YP_504381.1| - 0.62 9.1 19.7 0.77 8.8 6.6 2.3 1 1 1 2 2 2 0 Actin interacting protein 3 BLOC1_2 PF10046.9 gi|88604203|ref|YP_504381.1| - 0.75 10.1 15.9 5 7.5 0.7 4.8 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlgN PF05130.12 gi|88604203|ref|YP_504381.1| - 0.81 10.2 15.6 1.6 9.2 1.2 4.2 2 1 2 4 4 4 0 FlgN protein FliJ PF02050.16 gi|88604203|ref|YP_504381.1| - 1.8 8.8 5.7 5.1 7.4 3.8 2.7 2 0 0 2 2 2 0 Flagellar FliJ protein ATG16 PF08614.11 gi|88604203|ref|YP_504381.1| - 2.4 8.3 12.2 0.42 10.8 0.4 2.8 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Fib_alpha PF08702.10 gi|88604203|ref|YP_504381.1| - 2.9 8.1 18.8 7.4 6.8 0.6 5.2 4 1 1 5 5 5 0 Fibrinogen alpha/beta chain family DUF2277 PF10041.9 gi|88604203|ref|YP_504381.1| - 3.4 8.1 11.7 63 4.0 0.0 4.3 3 1 0 4 4 4 0 Uncharacterized conserved protein (DUF2277) Fzo_mitofusin PF04799.13 gi|88604203|ref|YP_504381.1| - 3.5 7.1 15.0 7.8 6.0 2.8 4.1 3 1 1 4 4 4 0 fzo-like conserved region Sec34 PF04136.15 gi|88604203|ref|YP_504381.1| - 6.7 6.6 13.3 17 5.2 0.8 4.8 3 2 1 5 5 5 0 Sec34-like family TPP_enzyme_C PF02775.21 gi|88604204|ref|YP_504382.1| - 1.4e-11 44.4 0.0 2.7e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|88604204|ref|YP_504382.1| - 1.1e-09 38.2 0.0 1.1e-08 34.9 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PALP PF00291.25 gi|88604205|ref|YP_504383.1| - 2.4e-28 99.4 0.0 3e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-C2H2 PF00096.26 gi|88604205|ref|YP_504383.1| - 0.095 13.2 0.3 0.21 12.1 0.3 1.6 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 gi|88604205|ref|YP_504383.1| - 0.27 11.6 0.1 0.44 10.9 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding HcyBio PF01837.16 gi|88604206|ref|YP_504384.1| - 6e-101 337.7 0.0 6.8e-101 337.6 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_7 PF12838.7 gi|88604206|ref|YP_504384.1| - 0.00015 22.3 8.0 0.091 13.4 1.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|88604206|ref|YP_504384.1| - 0.0067 16.5 3.9 0.0067 16.5 3.9 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|88604206|ref|YP_504384.1| - 0.019 15.1 15.4 0.054 13.6 13.1 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88604206|ref|YP_504384.1| - 0.27 11.4 15.8 0.72 10.1 13.7 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|88604206|ref|YP_504384.1| - 0.68 10.2 6.1 0.24 11.6 3.0 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88604206|ref|YP_504384.1| - 1.6 8.9 15.6 1.3 9.2 3.5 2.9 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|88604206|ref|YP_504384.1| - 1.8 9.3 7.7 4.6 8.1 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|88604206|ref|YP_504384.1| - 3 8.1 17.4 0.16 12.1 2.5 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|88604206|ref|YP_504384.1| - 4.2 7.4 21.6 0.16 11.9 2.2 4.1 3 1 0 3 3 3 0 4Fe-4S binding domain FeS PF04060.13 gi|88604207|ref|YP_504385.1| - 1.5e-11 43.7 2.5 2.8e-11 42.9 2.5 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|88604208|ref|YP_504386.1| - 7.8e-14 51.7 0.0 1e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|88604208|ref|YP_504386.1| - 0.0028 17.4 0.1 0.32 10.7 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.21 gi|88604208|ref|YP_504386.1| - 0.0063 15.9 0.0 3.1 7.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|88604208|ref|YP_504386.1| - 0.0068 16.4 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|88604208|ref|YP_504386.1| - 0.021 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|88604208|ref|YP_504386.1| - 0.039 13.2 0.0 0.086 12.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 gi|88604208|ref|YP_504386.1| - 0.039 14.4 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|88604208|ref|YP_504386.1| - 0.098 12.8 0.0 0.18 12.0 0.0 1.7 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|88604208|ref|YP_504386.1| - 0.11 13.1 0.0 0.26 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|88604208|ref|YP_504386.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|88604208|ref|YP_504386.1| - 0.2 12.1 0.0 0.45 10.9 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|88604209|ref|YP_504387.1| - 1.9e-11 44.6 0.0 2.9e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88604209|ref|YP_504387.1| - 4.3e-06 26.8 0.9 0.046 13.5 0.3 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604209|ref|YP_504387.1| - 0.00078 18.9 0.1 0.45 9.9 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88604209|ref|YP_504387.1| - 0.0031 17.2 0.0 0.0093 15.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|88604209|ref|YP_504387.1| - 0.03 14.6 0.2 0.45 10.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|88604209|ref|YP_504387.1| - 0.046 13.4 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|88604209|ref|YP_504387.1| - 0.1 12.1 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|88604209|ref|YP_504387.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|88604209|ref|YP_504387.1| - 0.11 12.8 0.0 0.17 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|88604209|ref|YP_504387.1| - 0.14 12.1 0.1 4.8 7.0 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|88604209|ref|YP_504387.1| - 0.17 12.4 0.1 0.28 11.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|88604210|ref|YP_504388.1| - 5.4e-48 163.2 37.2 5.8e-28 97.9 12.7 4.5 1 1 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|88604211|ref|YP_504389.1| - 5.9e-31 107.8 0.0 7.9e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88604211|ref|YP_504389.1| - 5.4e-11 42.9 0.0 0.00022 21.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604211|ref|YP_504389.1| - 6.8e-09 35.5 0.0 3.6e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88604211|ref|YP_504389.1| - 8e-05 22.3 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88604211|ref|YP_504389.1| - 0.00012 22.5 0.0 0.00029 21.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|88604211|ref|YP_504389.1| - 0.00017 21.9 0.0 0.00029 21.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|88604211|ref|YP_504389.1| - 0.00038 20.4 0.0 0.0013 18.7 0.0 1.8 3 0 0 3 3 3 1 RsgA GTPase AAA_23 PF13476.6 gi|88604211|ref|YP_504389.1| - 0.00054 20.5 0.0 0.0013 19.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|88604211|ref|YP_504389.1| - 0.0027 17.5 0.0 0.023 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|88604211|ref|YP_504389.1| - 0.0036 17.2 0.0 0.008 16.1 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|88604211|ref|YP_504389.1| - 0.0076 16.4 0.0 0.01 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|88604211|ref|YP_504389.1| - 0.016 14.8 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|88604211|ref|YP_504389.1| - 0.04 14.3 0.2 1.2 9.6 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|88604211|ref|YP_504389.1| - 0.092 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TniB PF05621.11 gi|88604211|ref|YP_504389.1| - 0.093 12.1 0.0 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein AAA_7 PF12775.7 gi|88604211|ref|YP_504389.1| - 0.12 11.9 0.1 0.51 9.8 0.0 2.0 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|88604211|ref|YP_504389.1| - 0.13 12.0 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|88604211|ref|YP_504389.1| - 0.13 12.3 0.3 0.69 9.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|88604211|ref|YP_504389.1| - 0.13 12.8 0.1 0.24 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|88604211|ref|YP_504389.1| - 0.16 11.8 0.0 1.2 9.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|88604211|ref|YP_504389.1| - 0.18 12.0 0.0 0.34 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoU PF01895.19 gi|88604212|ref|YP_504390.1| - 3.8e-34 117.0 10.4 7.7e-17 61.5 4.7 2.1 2 0 0 2 2 2 2 PhoU domain PBP_like_2 PF12849.7 gi|88604213|ref|YP_504391.1| - 3.2e-41 141.8 2.1 1e-40 140.2 2.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|88604213|ref|YP_504391.1| - 1.1e-22 80.1 0.1 1.4e-22 79.7 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|88604213|ref|YP_504391.1| - 6.4e-11 42.4 0.0 9.6e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|88604213|ref|YP_504391.1| - 2.4e-05 24.4 0.4 7.8e-05 22.8 0.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Response_reg PF00072.24 gi|88604214|ref|YP_504392.1| - 3.1e-22 78.9 0.0 6.2e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|88604214|ref|YP_504392.1| - 1.9e-18 66.5 0.0 1.2e-11 44.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|88604214|ref|YP_504392.1| - 1.1e-15 57.7 0.1 4.1e-11 43.1 0.0 3.2 3 1 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|88604214|ref|YP_504392.1| - 1.9e-13 50.1 0.0 2.6e-05 24.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|88604214|ref|YP_504392.1| - 7.1e-11 42.3 0.0 1.1e-08 35.2 0.0 3.3 2 1 1 3 3 3 1 PAS fold PAS_4 PF08448.10 gi|88604214|ref|YP_504392.1| - 5e-09 36.4 0.0 0.00031 21.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|88604214|ref|YP_504392.1| - 0.00029 21.1 0.0 0.0012 19.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold LEF-4 PF05098.12 gi|88604214|ref|YP_504392.1| - 0.034 13.0 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Late expression factor 4 (LEF-4) HisKA PF00512.25 gi|88604214|ref|YP_504392.1| - 0.066 13.3 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain SNARE_assoc PF09335.11 gi|88604215|ref|YP_504393.1| - 3.1e-20 72.9 7.3 3.1e-20 72.9 7.3 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein Osw5 PF17062.5 gi|88604215|ref|YP_504393.1| - 0.88 9.7 7.6 0.12 12.5 1.9 2.3 2 0 0 2 2 2 0 Outer spore wall 5 CHAD PF05235.14 gi|88604216|ref|YP_504394.1| - 4.7e-56 190.3 0.0 8e-55 186.3 0.0 2.4 2 1 0 2 2 2 1 CHAD domain Metallophos_2 PF12850.7 gi|88604216|ref|YP_504394.1| - 6.7e-28 97.9 0.0 1.2e-27 97.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|88604216|ref|YP_504394.1| - 6.3e-09 36.6 0.0 1.4e-07 32.2 0.0 2.6 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase HD PF01966.22 gi|88604217|ref|YP_504395.1| - 5.1e-08 33.2 1.1 7.9e-08 32.6 1.1 1.2 1 0 0 1 1 1 1 HD domain Ppx-GppA PF02541.16 gi|88604218|ref|YP_504396.1| - 5e-57 193.5 0.8 7e-57 193.0 0.8 1.1 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.22 gi|88604218|ref|YP_504396.1| - 1.8e-07 31.4 1.1 4.4e-07 30.2 0.4 2.0 2 0 0 2 2 2 1 HD domain FtsA PF14450.6 gi|88604218|ref|YP_504396.1| - 0.0041 17.5 0.0 0.11 12.9 0.0 2.8 3 0 0 3 3 3 1 Cell division protein FtsA FMN_red PF03358.15 gi|88604219|ref|YP_504397.1| - 1e-27 96.8 0.0 1.2e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|88604219|ref|YP_504397.1| - 1.8e-05 24.6 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|88604219|ref|YP_504397.1| - 2e-05 24.8 0.0 9e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin domain POR_N PF01855.19 gi|88604220|ref|YP_504398.1| - 8.2e-47 159.9 0.0 1.2e-46 159.3 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|88604220|ref|YP_504398.1| - 3.8e-25 89.0 0.0 1.3e-24 87.2 0.0 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|88604220|ref|YP_504398.1| - 3.9e-08 33.1 0.1 7.6e-08 32.2 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|88604220|ref|YP_504398.1| - 0.013 15.7 0.0 0.028 14.7 0.0 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|88604220|ref|YP_504398.1| - 0.023 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|88604221|ref|YP_504399.1| - 2.1e-32 112.0 0.0 2.8e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|88604221|ref|YP_504399.1| - 4.6e-06 26.7 0.1 1e-05 25.5 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal TPR_2 PF07719.17 gi|88604222|ref|YP_504400.1| - 2.3e-39 130.3 10.7 3.5e-06 26.7 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88604222|ref|YP_504400.1| - 5.6e-38 127.2 11.0 1.2e-08 34.4 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604222|ref|YP_504400.1| - 1.8e-30 104.3 15.9 3.2e-07 29.9 0.0 6.2 3 2 3 6 6 6 6 TPR repeat TPR_8 PF13181.6 gi|88604222|ref|YP_504400.1| - 1.8e-28 96.3 13.9 4.2e-08 32.8 0.0 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604222|ref|YP_504400.1| - 1.1e-23 83.3 16.1 1.5e-08 34.8 0.0 5.2 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604222|ref|YP_504400.1| - 2.2e-19 69.8 5.2 4.2e-06 27.3 2.4 3.9 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604222|ref|YP_504400.1| - 1.7e-18 65.7 1.8 0.0021 18.7 0.0 6.2 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604222|ref|YP_504400.1| - 1e-15 58.0 8.1 0.00035 21.0 0.0 4.1 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88604222|ref|YP_504400.1| - 3e-15 56.1 0.6 1.6e-05 25.0 0.0 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604222|ref|YP_504400.1| - 2.3e-13 49.5 12.0 0.0017 18.6 0.1 6.4 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604222|ref|YP_504400.1| - 5.7e-11 41.6 4.3 0.0031 17.4 0.0 5.3 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604222|ref|YP_504400.1| - 4.2e-09 36.5 9.4 0.15 12.8 0.0 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88604222|ref|YP_504400.1| - 1.4e-08 34.4 11.0 0.015 15.2 0.0 5.4 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|88604222|ref|YP_504400.1| - 1.8e-06 27.8 8.2 0.034 13.9 0.1 4.6 1 1 3 4 4 4 2 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|88604222|ref|YP_504400.1| - 6.3e-06 26.7 1.2 0.0043 17.5 0.4 2.9 2 2 0 2 2 2 1 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|88604222|ref|YP_504400.1| - 2.2e-05 23.6 2.3 0.051 12.5 0.0 3.0 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|88604222|ref|YP_504400.1| - 4.3e-05 23.7 6.2 0.74 10.1 1.3 4.0 1 1 3 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 Rota_NSP3 PF01665.16 gi|88604222|ref|YP_504400.1| - 7.5e-05 22.0 0.5 0.14 11.2 0.0 2.2 1 1 0 2 2 2 2 Rotavirus non-structural protein NSP3 TPR_15 PF13429.6 gi|88604222|ref|YP_504400.1| - 0.0038 16.5 4.3 1.8 7.7 3.5 2.7 1 1 0 2 2 2 2 Tetratricopeptide repeat MIT PF04212.18 gi|88604222|ref|YP_504400.1| - 0.024 14.7 10.1 1.2 9.2 0.1 4.7 5 0 0 5 5 4 0 MIT (microtubule interacting and transport) domain FAT PF02259.23 gi|88604222|ref|YP_504400.1| - 0.034 13.4 0.2 0.072 12.3 0.2 1.7 1 1 0 1 1 1 0 FAT domain RPN7 PF10602.9 gi|88604222|ref|YP_504400.1| - 0.058 13.1 2.2 3.4 7.4 0.0 3.3 2 2 1 3 3 3 0 26S proteasome subunit RPN7 ANAPC5 PF12862.7 gi|88604222|ref|YP_504400.1| - 0.08 13.0 1.6 4.3 7.5 0.0 3.5 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 SRP_TPR_like PF17004.5 gi|88604222|ref|YP_504400.1| - 0.1 12.6 2.0 0.23 11.5 0.8 2.2 1 1 1 2 2 2 0 Putative TPR-like repeat DUF3856 PF12968.7 gi|88604222|ref|YP_504400.1| - 0.21 11.7 2.9 19 5.3 0.2 4.0 3 2 1 4 4 4 0 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|88604222|ref|YP_504400.1| - 0.68 10.0 13.3 11 6.2 0.0 4.3 4 1 1 5 5 4 0 Tetratricopeptide repeat Pyridox_ox_2 PF12900.7 gi|88604223|ref|YP_504401.1| - 1.1e-23 83.8 0.0 1.3e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|88604223|ref|YP_504401.1| - 0.0022 18.2 0.0 0.0033 17.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Thioredox_DsbH PF03190.15 gi|88604224|ref|YP_504402.1| - 7.3e-72 240.6 0.1 1.1e-71 240.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|88604224|ref|YP_504402.1| - 1.9e-11 44.0 0.1 3.7e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|88604224|ref|YP_504402.1| - 0.00091 18.4 0.0 0.013 14.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 PAS_4 PF08448.10 gi|88604225|ref|YP_504403.1| - 1.6e-21 76.6 0.1 3e-12 46.8 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88604225|ref|YP_504403.1| - 9.6e-21 74.0 0.1 1.9e-06 28.1 0.0 3.3 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|88604225|ref|YP_504403.1| - 7.6e-20 71.0 0.1 8.6e-10 38.6 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|88604225|ref|YP_504403.1| - 3e-10 40.2 0.0 2.3e-05 24.6 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|88604225|ref|YP_504403.1| - 9.6e-08 31.9 0.0 4.2e-05 23.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain HTH_11 PF08279.12 gi|88604225|ref|YP_504403.1| - 0.0046 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_Tnp_Tc3_1 PF11427.8 gi|88604225|ref|YP_504403.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase HTH_3 PF01381.22 gi|88604226|ref|YP_504404.1| - 3e-05 24.0 0.0 4.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|88604226|ref|YP_504404.1| - 0.00091 19.5 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|88604226|ref|YP_504404.1| - 0.019 14.9 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain ClpB_D2-small PF10431.9 gi|88604226|ref|YP_504404.1| - 0.026 14.6 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein Sigma70_r4_2 PF08281.12 gi|88604226|ref|YP_504404.1| - 0.039 13.6 0.1 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|88604226|ref|YP_504404.1| - 0.05 13.4 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|88604226|ref|YP_504404.1| - 0.084 12.8 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT zf-ribbon_3 PF13248.6 gi|88604226|ref|YP_504404.1| - 0.13 11.7 4.8 2.8 7.5 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Fe_dep_repress PF01325.19 gi|88604226|ref|YP_504404.1| - 0.16 12.2 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4473 PF14747.6 gi|88604226|ref|YP_504404.1| - 0.18 12.4 0.0 0.35 11.5 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) DDE_Tnp_IS1 PF03400.13 gi|88604227|ref|YP_504405.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88604227|ref|YP_504405.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88604227|ref|YP_504405.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88604228|ref|YP_504406.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88604228|ref|YP_504406.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88604228|ref|YP_504406.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88604228|ref|YP_504406.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain PEGA PF08308.11 gi|88604229|ref|YP_504407.1| - 4.5e-75 247.5 5.2 4e-16 58.6 0.0 6.2 6 0 0 6 6 6 6 PEGA domain CarboxypepD_reg PF13620.6 gi|88604229|ref|YP_504407.1| - 3.7e-21 75.2 1.1 0.0021 18.3 0.0 6.3 6 1 0 6 6 6 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88604229|ref|YP_504407.1| - 3.5e-08 33.3 0.0 0.04 13.9 0.0 5.1 5 0 0 5 5 5 2 CarboxypepD_reg-like domain AfaD PF05775.12 gi|88604229|ref|YP_504407.1| - 0.015 15.7 0.1 1.7 9.1 0.0 2.9 2 0 0 2 2 2 0 Enterobacteria AfaD invasin protein DUF2012 PF09430.10 gi|88604229|ref|YP_504407.1| - 0.11 12.6 0.0 11 6.2 0.0 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2012) DUF2606 PF10794.9 gi|88604230|ref|YP_504408.1| - 0.083 12.7 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2606) Met_10 PF02475.16 gi|88604231|ref|YP_504409.1| - 7.5e-50 169.5 0.0 9.6e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|88604231|ref|YP_504409.1| - 1.6e-17 63.1 0.3 3.8e-17 61.9 0.3 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|88604231|ref|YP_504409.1| - 9.8e-06 25.2 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|88604231|ref|YP_504409.1| - 4.6e-05 24.0 0.0 8.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604231|ref|YP_504409.1| - 4.8e-05 23.2 0.0 8.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88604231|ref|YP_504409.1| - 5.3e-05 22.8 0.0 7.1e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|88604231|ref|YP_504409.1| - 0.0036 16.3 0.0 0.0053 15.8 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|88604231|ref|YP_504409.1| - 0.014 16.0 0.0 0.033 14.8 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|88604231|ref|YP_504409.1| - 0.017 14.8 0.0 0.038 13.6 0.0 1.5 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_15 PF09445.10 gi|88604231|ref|YP_504409.1| - 0.019 14.6 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DNA_methylase PF00145.17 gi|88604231|ref|YP_504409.1| - 0.028 13.8 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.6 gi|88604231|ref|YP_504409.1| - 0.032 14.1 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|88604231|ref|YP_504409.1| - 0.12 12.1 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase HMG-CoA_red PF00368.18 gi|88604232|ref|YP_504410.1| - 9.2e-130 432.9 5.6 1e-129 432.7 5.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Big_3_5 PF16640.5 gi|88604233|ref|YP_504411.1| - 2.5e-08 34.0 2.7 1.7e-06 28.1 0.5 2.4 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 gi|88604233|ref|YP_504411.1| - 1.4e-06 28.2 0.4 7.4e-06 25.9 0.2 2.3 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|88604233|ref|YP_504411.1| - 1.3e-05 25.3 1.0 4.6e-05 23.6 0.3 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|88604233|ref|YP_504411.1| - 0.25 11.7 1.9 0.31 11.4 0.8 1.8 2 0 0 2 2 2 0 Invasin, domain 3 Jagunal PF07086.12 gi|88604234|ref|YP_504412.1| - 0.051 13.6 2.5 0.058 13.5 2.5 1.1 1 0 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis DUF1772 PF08592.11 gi|88604234|ref|YP_504412.1| - 0.57 10.5 5.8 0.67 10.3 5.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) ASFV_L11L PF05293.11 gi|88604234|ref|YP_504412.1| - 0.99 9.8 7.3 0.77 10.1 4.1 2.0 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein DUF4131 PF13567.6 gi|88604234|ref|YP_504412.1| - 1 9.0 4.3 1.5 8.5 4.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2070 PF09843.9 gi|88604234|ref|YP_504412.1| - 7.5 4.7 11.2 8.7 4.5 11.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HMA PF00403.26 gi|88604235|ref|YP_504413.1| - 0.04 14.4 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Heavy-metal-associated domain Exonuc_VII_S PF02609.16 gi|88604236|ref|YP_504414.1| - 4.7e-20 71.4 3.1 5.3e-20 71.2 3.1 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit ATPase PF06745.13 gi|88604236|ref|YP_504414.1| - 0.028 13.8 0.2 0.028 13.8 0.2 1.0 1 0 0 1 1 1 0 KaiC ArsR PF09824.9 gi|88604236|ref|YP_504414.1| - 0.1 12.2 0.2 0.11 12.1 0.2 1.0 1 0 0 1 1 1 0 ArsR transcriptional regulator Exonuc_VII_L PF02601.15 gi|88604237|ref|YP_504415.1| - 1.1e-78 264.8 0.0 1.4e-78 264.6 0.0 1.0 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|88604237|ref|YP_504415.1| - 1.7e-26 92.3 0.0 3.9e-26 91.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|88604237|ref|YP_504415.1| - 1.1e-05 25.4 0.0 0.0048 16.9 0.0 2.6 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain ABM PF03992.16 gi|88604237|ref|YP_504415.1| - 0.0042 17.2 0.0 0.27 11.4 0.0 2.8 2 1 1 3 3 3 1 Antibiotic biosynthesis monooxygenase DUF4795 PF16043.5 gi|88604237|ref|YP_504415.1| - 0.08 12.5 0.8 0.12 12.0 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) AP_endonuc_2 PF01261.24 gi|88604238|ref|YP_504416.1| - 6.9e-17 61.6 0.0 9.9e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF21 PF01595.20 gi|88604239|ref|YP_504417.1| - 3.8e-54 183.1 6.8 5.3e-54 182.6 6.8 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|88604239|ref|YP_504417.1| - 3e-20 72.0 1.7 4.8e-20 71.3 0.2 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|88604239|ref|YP_504417.1| - 5.3e-16 58.8 2.3 2.3e-08 34.4 0.3 3.1 2 0 0 2 2 2 2 CBS domain Formyl_trans_N PF00551.19 gi|88604240|ref|YP_504418.1| - 2.1e-56 190.5 0.0 2.4e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Rpr2 PF04032.16 gi|88604241|ref|YP_504419.1| - 6.2e-15 55.3 0.2 8.8e-15 54.8 0.2 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain HydF_tetramer PF18133.1 gi|88604241|ref|YP_504419.1| - 0.09 12.5 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Hydrogen maturase F tetramerization domain CRS1_YhbY PF01985.21 gi|88604242|ref|YP_504420.1| - 1.2e-09 38.2 0.3 1.6e-09 37.8 0.3 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.19 gi|88604243|ref|YP_504421.1| - 7.2e-58 194.2 0.0 8e-58 194.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|88604243|ref|YP_504421.1| - 0.018 14.9 0.0 0.24 11.3 0.0 2.1 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_12 PF08461.10 gi|88604243|ref|YP_504421.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|88604243|ref|YP_504421.1| - 0.049 13.6 0.0 0.072 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix dsDNA_bind PF01984.20 gi|88604244|ref|YP_504422.1| - 2.7e-29 101.7 16.0 3.2e-29 101.4 16.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain BAR_3 PF16746.5 gi|88604244|ref|YP_504422.1| - 0.018 14.8 6.2 0.021 14.5 6.2 1.0 1 0 0 1 1 1 0 BAR domain of APPL family E1-N PF14463.6 gi|88604244|ref|YP_504422.1| - 0.051 13.4 0.1 0.065 13.0 0.1 1.2 1 0 0 1 1 1 0 E1 N-terminal domain NT5C PF06941.12 gi|88604244|ref|YP_504422.1| - 0.062 13.2 0.2 0.071 13.0 0.2 1.1 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF2262 PF10020.9 gi|88604244|ref|YP_504422.1| - 0.087 13.2 0.3 0.11 12.9 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2262) Asn_synthase PF00733.21 gi|88604245|ref|YP_504423.1| - 0.0083 15.8 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|88604245|ref|YP_504423.1| - 0.009 15.5 0.0 0.019 14.4 0.0 1.7 2 0 0 2 2 2 1 Diphthamide synthase QueC PF06508.13 gi|88604245|ref|YP_504423.1| - 0.033 13.7 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|88604245|ref|YP_504423.1| - 0.044 13.5 0.1 4.3 7.1 0.0 2.3 2 1 0 2 2 2 0 PP-loop family tRNA_Me_trans PF03054.16 gi|88604245|ref|YP_504423.1| - 0.075 11.8 0.0 0.16 10.7 0.0 1.6 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 gi|88604245|ref|YP_504423.1| - 0.23 11.0 0.0 3.3 7.2 0.0 2.1 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Ribosomal_L39 PF00832.20 gi|88604246|ref|YP_504424.1| - 1.4e-18 66.2 9.0 1.7e-18 65.9 9.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Nmad3 PF18754.1 gi|88604246|ref|YP_504424.1| - 0.13 11.8 0.4 0.12 11.9 0.4 1.0 1 0 0 1 1 1 0 Nucleotide modification associated domain 3 Ribosomal_L31e PF01198.19 gi|88604247|ref|YP_504425.1| - 5.5e-13 49.0 0.1 6.6e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|88604248|ref|YP_504426.1| - 2e-67 226.4 0.3 2.4e-67 226.2 0.3 1.0 1 0 0 1 1 1 1 eIF-6 family DUF5393 PF17371.2 gi|88604248|ref|YP_504426.1| - 0.068 11.3 0.0 0.094 10.8 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5393) Prefoldin PF02996.17 gi|88604249|ref|YP_504427.1| - 3e-23 82.0 2.2 3.7e-23 81.7 2.2 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|88604249|ref|YP_504427.1| - 1.5e-09 37.8 1.5 0.00039 20.3 0.8 2.1 2 0 0 2 2 2 2 Prefoldin subunit DHR10 PF18595.1 gi|88604249|ref|YP_504427.1| - 0.0003 20.8 5.8 0.0038 17.3 0.7 2.1 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain SlyX PF04102.12 gi|88604249|ref|YP_504427.1| - 0.0013 19.3 8.0 0.09 13.4 3.0 2.2 2 0 0 2 2 2 1 SlyX Spc7 PF08317.11 gi|88604249|ref|YP_504427.1| - 0.0016 17.4 6.6 0.019 13.9 2.9 2.0 2 0 0 2 2 2 1 Spc7 kinetochore protein HMMR_N PF15905.5 gi|88604249|ref|YP_504427.1| - 0.004 16.7 4.6 0.37 10.2 0.1 2.0 2 0 0 2 2 2 2 Hyaluronan mediated motility receptor N-terminal DUF812 PF05667.11 gi|88604249|ref|YP_504427.1| - 0.0045 15.9 8.3 0.25 10.2 4.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Uds1 PF15456.6 gi|88604249|ref|YP_504427.1| - 0.0054 16.9 0.1 0.0079 16.4 0.1 1.2 1 0 0 1 1 1 1 Up-regulated During Septation DUF4200 PF13863.6 gi|88604249|ref|YP_504427.1| - 0.007 16.8 6.1 0.095 13.1 2.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4200) DUF948 PF06103.11 gi|88604249|ref|YP_504427.1| - 0.008 16.4 0.9 0.076 13.3 0.3 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|88604249|ref|YP_504427.1| - 0.0083 16.2 1.7 0.091 12.8 1.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) MscS_porin PF12795.7 gi|88604249|ref|YP_504427.1| - 0.0092 15.6 9.4 0.044 13.3 4.3 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Laminin_II PF06009.12 gi|88604249|ref|YP_504427.1| - 0.0098 15.9 2.5 0.17 11.9 0.9 2.1 2 0 0 2 2 2 1 Laminin Domain II ADIP PF11559.8 gi|88604249|ref|YP_504427.1| - 0.01 15.9 8.2 0.51 10.4 3.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|88604249|ref|YP_504427.1| - 0.015 15.8 2.2 0.064 13.7 1.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein PspA_IM30 PF04012.12 gi|88604249|ref|YP_504427.1| - 0.017 14.7 9.5 0.062 12.9 4.0 2.0 2 0 0 2 2 2 0 PspA/IM30 family DUF4407 PF14362.6 gi|88604249|ref|YP_504427.1| - 0.021 14.2 2.5 0.075 12.4 1.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.9 gi|88604249|ref|YP_504427.1| - 0.024 14.7 4.3 0.23 11.5 1.6 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CdvA PF18822.1 gi|88604249|ref|YP_504427.1| - 0.025 14.4 3.4 2.5 7.9 1.5 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain FliD_C PF07195.12 gi|88604249|ref|YP_504427.1| - 0.025 14.0 0.7 0.025 14.0 0.7 1.9 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus SesA PF17107.5 gi|88604249|ref|YP_504427.1| - 0.026 14.7 1.0 0.047 13.9 0.2 1.7 2 1 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases KxDL PF10241.9 gi|88604249|ref|YP_504427.1| - 0.027 14.7 4.5 0.088 13.1 2.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein Phage_GP20 PF06810.11 gi|88604249|ref|YP_504427.1| - 0.029 14.2 3.3 0.29 10.9 1.5 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 Cep57_CLD_2 PF14197.6 gi|88604249|ref|YP_504427.1| - 0.033 14.3 4.6 1.1 9.4 0.2 2.9 3 1 0 3 3 3 0 Centrosome localisation domain of PPC89 OmpH PF03938.14 gi|88604249|ref|YP_504427.1| - 0.042 14.2 7.4 0.071 13.5 2.3 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Tropomyosin_1 PF12718.7 gi|88604249|ref|YP_504427.1| - 0.045 13.9 7.3 0.92 9.7 2.8 2.1 2 0 0 2 2 2 0 Tropomyosin like BLOC1_2 PF10046.9 gi|88604249|ref|YP_504427.1| - 0.045 14.0 4.3 0.29 11.5 0.8 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|88604249|ref|YP_504427.1| - 0.058 13.8 2.4 1.4 9.4 0.4 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Cauli_AT PF03233.13 gi|88604249|ref|YP_504427.1| - 0.061 13.2 1.2 0.079 12.9 0.6 1.4 2 0 0 2 2 1 0 Aphid transmission protein DUF241 PF03087.14 gi|88604249|ref|YP_504427.1| - 0.068 13.0 0.7 0.24 11.2 0.1 1.8 2 0 0 2 2 2 0 Arabidopsis protein of unknown function CLZ PF16526.5 gi|88604249|ref|YP_504427.1| - 0.073 13.4 1.6 0.073 13.4 1.6 2.3 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Med4 PF10018.9 gi|88604249|ref|YP_504427.1| - 0.079 12.6 1.3 0.16 11.6 1.3 1.5 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4226 PF10774.9 gi|88604249|ref|YP_504427.1| - 0.081 13.2 3.6 4.5 7.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Tektin PF03148.14 gi|88604249|ref|YP_504427.1| - 0.11 11.2 5.9 0.066 12.0 2.2 1.9 2 0 0 2 2 2 0 Tektin family GrpE PF01025.19 gi|88604249|ref|YP_504427.1| - 0.11 12.1 5.1 0.18 11.4 2.6 1.9 2 0 0 2 2 2 0 GrpE DUF2203 PF09969.9 gi|88604249|ref|YP_504427.1| - 0.13 12.9 2.7 0.3 11.8 0.4 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|88604249|ref|YP_504427.1| - 0.15 11.3 1.0 4.3 6.5 1.2 2.0 2 0 0 2 2 2 0 TMPIT-like protein SKA1 PF07160.12 gi|88604249|ref|YP_504427.1| - 0.16 11.8 3.4 0.23 11.3 0.9 1.9 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 PG_binding_1 PF01471.18 gi|88604249|ref|YP_504427.1| - 0.16 12.2 2.1 11 6.4 0.2 2.5 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF3653 PF12375.8 gi|88604249|ref|YP_504427.1| - 0.16 12.1 0.2 13 5.9 0.0 2.2 2 0 0 2 2 2 0 Phage protein XhlA PF10779.9 gi|88604249|ref|YP_504427.1| - 0.17 12.1 4.2 0.63 10.3 0.8 2.5 2 1 0 2 2 2 0 Haemolysin XhlA Seryl_tRNA_N PF02403.22 gi|88604249|ref|YP_504427.1| - 0.19 12.0 4.9 0.96 9.7 2.3 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Glutaredoxin2_C PF04399.13 gi|88604249|ref|YP_504427.1| - 0.2 11.5 2.0 4.6 7.1 0.3 2.1 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain DUF16 PF01519.16 gi|88604249|ref|YP_504427.1| - 0.21 12.1 3.2 1 9.9 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 HrpB7 PF09486.10 gi|88604249|ref|YP_504427.1| - 0.23 11.8 8.8 0.4 11.1 2.8 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) Med9 PF07544.13 gi|88604249|ref|YP_504427.1| - 0.24 11.5 6.5 0.13 12.3 2.0 2.2 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 CENP-Q PF13094.6 gi|88604249|ref|YP_504427.1| - 0.25 11.6 7.2 4.5 7.4 1.7 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF641 PF04859.12 gi|88604249|ref|YP_504427.1| - 0.25 11.7 4.9 0.28 11.5 1.3 2.0 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Baculo_PEP_C PF04513.12 gi|88604249|ref|YP_504427.1| - 0.26 11.3 3.7 0.92 9.6 0.8 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6_N PF17675.1 gi|88604249|ref|YP_504427.1| - 0.3 11.6 10.3 2.5 8.7 10.4 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region T3SSipB PF16535.5 gi|88604249|ref|YP_504427.1| - 0.39 11.2 7.5 0.12 12.9 3.1 1.9 2 0 0 2 2 2 0 Type III cell invasion protein SipB WXG100 PF06013.12 gi|88604249|ref|YP_504427.1| - 0.39 11.0 6.7 1.2 9.4 1.3 2.4 2 0 0 2 2 2 0 Proteins of 100 residues with WXG ZnuA PF01297.17 gi|88604249|ref|YP_504427.1| - 0.42 10.0 2.2 4.7 6.6 0.5 2.1 2 0 0 2 2 2 0 Zinc-uptake complex component A periplasmic Sulfatase_C PF14707.6 gi|88604249|ref|YP_504427.1| - 0.43 11.3 1.3 19 6.0 0.3 2.1 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase Nsp1_C PF05064.13 gi|88604249|ref|YP_504427.1| - 0.5 10.2 6.6 0.41 10.5 2.5 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Spectrin PF00435.21 gi|88604249|ref|YP_504427.1| - 0.61 10.6 6.8 1.1 9.8 2.7 2.3 2 1 0 2 2 2 0 Spectrin repeat COG2 PF06148.11 gi|88604249|ref|YP_504427.1| - 0.62 10.2 3.3 0.57 10.3 0.6 2.0 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_13 PF13166.6 gi|88604249|ref|YP_504427.1| - 0.74 8.4 6.5 0.31 9.6 2.9 1.7 1 1 0 2 2 2 0 AAA domain TEX13 PF15186.6 gi|88604249|ref|YP_504427.1| - 0.78 9.4 4.7 0.38 10.4 1.4 1.8 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family DUF4482 PF14818.6 gi|88604249|ref|YP_504427.1| - 0.82 10.5 4.2 0.38 11.6 1.8 1.8 2 1 0 2 2 1 0 Domain of unknown function (DUF4482) Fib_alpha PF08702.10 gi|88604249|ref|YP_504427.1| - 0.91 9.7 5.7 2.9 8.1 2.5 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family YabA PF06156.13 gi|88604249|ref|YP_504427.1| - 1.2 9.8 3.8 4.2 8.1 0.8 2.2 2 0 0 2 2 2 0 Initiation control protein YabA STAG PF08514.11 gi|88604249|ref|YP_504427.1| - 1.3 9.0 4.3 15 5.5 0.8 2.2 2 0 0 2 2 2 0 STAG domain FlxA PF14282.6 gi|88604249|ref|YP_504427.1| - 1.8 8.6 13.6 0.69 9.9 8.2 2.2 2 0 0 2 2 2 0 FlxA-like protein Uso1_p115_C PF04871.13 gi|88604249|ref|YP_504427.1| - 2 8.8 9.4 1.2 9.6 3.3 2.1 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF3450 PF11932.8 gi|88604249|ref|YP_504427.1| - 2.6 7.3 10.9 1.7 7.9 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|88604249|ref|YP_504427.1| - 3.2 7.8 13.2 4.2 7.4 5.4 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4298 PF14131.6 gi|88604249|ref|YP_504427.1| - 5.4 7.0 7.5 0.75 9.8 2.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4298) SRP54 PF00448.22 gi|88604250|ref|YP_504428.1| - 1e-64 217.8 0.4 1.4e-64 217.4 0.4 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|88604250|ref|YP_504428.1| - 1.2e-09 38.3 1.3 1.2e-09 38.3 1.3 1.8 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|88604250|ref|YP_504428.1| - 6.3e-05 22.8 0.4 0.00016 21.4 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|88604250|ref|YP_504428.1| - 7.6e-05 23.1 1.1 0.0011 19.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|88604250|ref|YP_504428.1| - 0.00015 21.9 0.0 0.00028 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|88604250|ref|YP_504428.1| - 0.00021 20.6 0.1 0.00051 19.4 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin APS_kinase PF01583.20 gi|88604250|ref|YP_504428.1| - 0.00055 19.9 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|88604250|ref|YP_504428.1| - 0.00056 20.3 0.4 0.0016 18.8 0.2 1.9 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|88604250|ref|YP_504428.1| - 0.0008 19.4 1.4 0.0016 18.4 1.4 1.6 1 1 0 1 1 1 1 NTPase LytR_C PF13399.6 gi|88604250|ref|YP_504428.1| - 0.011 16.6 0.2 0.048 14.7 0.2 2.1 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_28 PF13521.6 gi|88604250|ref|YP_504428.1| - 0.026 14.8 0.5 0.16 12.2 0.5 2.1 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|88604250|ref|YP_504428.1| - 0.029 14.0 0.1 0.081 12.6 0.1 1.7 2 0 0 2 2 2 0 Thymidylate kinase AAA_7 PF12775.7 gi|88604250|ref|YP_504428.1| - 0.03 13.8 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|88604250|ref|YP_504428.1| - 0.035 14.5 0.0 0.099 13.1 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|88604250|ref|YP_504428.1| - 0.04 13.0 0.0 0.074 12.1 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|88604250|ref|YP_504428.1| - 0.049 13.9 0.2 0.13 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|88604250|ref|YP_504428.1| - 0.052 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|88604250|ref|YP_504428.1| - 0.061 13.0 0.3 0.12 12.1 0.3 1.6 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|88604250|ref|YP_504428.1| - 0.084 12.9 0.3 0.19 11.8 0.3 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|88604250|ref|YP_504428.1| - 0.09 12.7 0.7 0.2 11.5 0.3 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|88604250|ref|YP_504428.1| - 0.15 12.6 0.1 0.69 10.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DAP3 PF10236.9 gi|88604250|ref|YP_504428.1| - 0.2 10.8 0.1 1.9 7.6 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 SRP54 PF00448.22 gi|88604251|ref|YP_504429.1| - 1e-65 221.1 0.2 2e-65 220.1 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|88604251|ref|YP_504429.1| - 8e-29 100.2 0.4 2.9e-28 98.4 0.3 2.1 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|88604251|ref|YP_504429.1| - 1e-18 67.3 1.8 1e-18 67.3 1.8 2.2 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|88604251|ref|YP_504429.1| - 1.7e-07 31.3 0.0 7e-07 29.4 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|88604251|ref|YP_504429.1| - 2.2e-06 28.0 0.4 1.1e-05 25.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|88604251|ref|YP_504429.1| - 3.1e-05 23.4 0.1 0.00029 20.2 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin MeaB PF03308.16 gi|88604251|ref|YP_504429.1| - 9.7e-05 21.5 0.1 0.00023 20.3 0.1 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|88604251|ref|YP_504429.1| - 0.00011 21.9 0.9 0.00059 19.5 0.6 2.3 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|88604251|ref|YP_504429.1| - 0.00062 20.2 0.5 0.0053 17.1 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain MobB PF03205.14 gi|88604251|ref|YP_504429.1| - 0.00078 19.4 0.1 0.0021 18.0 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|88604251|ref|YP_504429.1| - 0.0014 18.6 0.4 0.0054 16.6 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_31 PF13614.6 gi|88604251|ref|YP_504429.1| - 0.0036 17.3 0.1 0.011 15.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|88604251|ref|YP_504429.1| - 0.0048 16.4 0.0 0.0088 15.5 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase 6PF2K PF01591.18 gi|88604251|ref|YP_504429.1| - 0.0051 16.1 0.0 0.0085 15.4 0.0 1.3 1 0 0 1 1 1 1 6-phosphofructo-2-kinase ATP_bind_1 PF03029.17 gi|88604251|ref|YP_504429.1| - 0.0082 16.0 0.1 0.09 12.5 0.1 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|88604251|ref|YP_504429.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|88604251|ref|YP_504429.1| - 0.014 16.0 0.4 0.074 13.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|88604251|ref|YP_504429.1| - 0.018 14.7 0.5 0.018 14.7 0.5 2.3 3 1 0 3 3 1 0 AAA domain AAA_26 PF13500.6 gi|88604251|ref|YP_504429.1| - 0.023 14.5 0.5 0.07 12.9 0.4 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|88604251|ref|YP_504429.1| - 0.025 14.5 0.4 0.097 12.6 0.1 2.2 3 0 0 3 3 1 0 NTPase Thymidylate_kin PF02223.17 gi|88604251|ref|YP_504429.1| - 0.026 14.2 0.1 0.086 12.5 0.1 1.9 1 0 0 1 1 1 0 Thymidylate kinase AAA_19 PF13245.6 gi|88604251|ref|YP_504429.1| - 0.028 14.8 1.2 0.068 13.5 0.3 2.2 3 0 0 3 3 2 0 AAA domain AAA_33 PF13671.6 gi|88604251|ref|YP_504429.1| - 0.031 14.4 1.4 0.046 13.9 0.3 1.9 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|88604251|ref|YP_504429.1| - 0.041 12.8 0.2 0.1 11.5 0.2 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TsaE PF02367.17 gi|88604251|ref|YP_504429.1| - 0.048 13.7 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|88604251|ref|YP_504429.1| - 0.069 12.2 1.3 0.17 10.9 0.3 2.1 2 1 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|88604251|ref|YP_504429.1| - 0.085 13.1 0.2 0.57 10.4 0.2 2.4 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|88604251|ref|YP_504429.1| - 0.089 13.2 3.6 7.6 7.0 0.1 3.8 4 0 0 4 4 4 0 AAA domain PRK PF00485.18 gi|88604251|ref|YP_504429.1| - 0.11 12.3 0.9 0.3 10.8 0.1 2.3 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family G-alpha PF00503.20 gi|88604251|ref|YP_504429.1| - 0.18 10.9 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ArsA_ATPase PF02374.15 gi|88604251|ref|YP_504429.1| - 0.22 10.6 4.2 1.2 8.3 0.2 3.3 4 0 0 4 4 4 0 Anion-transporting ATPase SpoVIF PF14069.6 gi|88604251|ref|YP_504429.1| - 1.3 8.8 6.0 0.31 10.9 0.9 2.7 4 0 0 4 4 2 0 Stage VI sporulation protein F Methyltrn_RNA_2 PF04013.12 gi|88604252|ref|YP_504430.1| - 1.9e-45 155.0 0.0 2.1e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|88604253|ref|YP_504431.1| - 1.4e-06 28.4 0.0 2.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|88604253|ref|YP_504431.1| - 1.3 9.4 8.5 3.9 7.9 4.1 2.7 2 2 0 2 2 2 0 DnaJ central domain Ribosomal_L21e PF01157.18 gi|88604254|ref|YP_504432.1| - 3.2e-37 126.4 1.2 3.4e-37 126.3 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|88604255|ref|YP_504433.1| - 3.4e-06 27.4 0.4 3.8e-06 27.2 0.4 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_M PF14841.6 gi|88604255|ref|YP_504433.1| - 0.0083 16.3 0.4 0.018 15.3 0.2 1.7 1 1 1 2 2 2 1 FliG middle domain DUF655 PF04919.12 gi|88604256|ref|YP_504434.1| - 2.2e-64 216.7 0.4 2.6e-64 216.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|88604256|ref|YP_504434.1| - 5.7e-06 26.5 0.1 0.00084 19.6 0.0 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|88604256|ref|YP_504434.1| - 0.086 13.1 0.1 0.35 11.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|88604257|ref|YP_504435.1| - 8.1e-46 156.2 0.0 9.2e-46 156.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|88604257|ref|YP_504435.1| - 4.6e-07 30.5 0.0 9.2e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604257|ref|YP_504435.1| - 3.2e-06 27.7 0.0 7.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88604257|ref|YP_504435.1| - 0.00036 20.4 0.0 0.00046 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|88604257|ref|YP_504435.1| - 0.0017 18.2 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|88604257|ref|YP_504435.1| - 0.058 14.1 0.0 0.12 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|88604258|ref|YP_504436.1| - 5.9e-07 29.2 0.0 0.0011 18.5 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase small domain PrmA PF06325.13 gi|88604258|ref|YP_504436.1| - 0.00028 20.4 0.1 0.00069 19.1 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|88604258|ref|YP_504436.1| - 0.0012 18.8 0.0 0.018 14.9 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|88604258|ref|YP_504436.1| - 0.0022 17.6 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.6 gi|88604258|ref|YP_504436.1| - 0.0036 18.0 0.1 0.033 14.9 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604258|ref|YP_504436.1| - 0.0066 17.1 0.1 0.55 10.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604258|ref|YP_504436.1| - 0.0073 17.0 0.0 0.62 10.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|88604258|ref|YP_504436.1| - 0.012 15.4 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|88604258|ref|YP_504436.1| - 0.049 13.4 0.0 0.073 12.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|88604258|ref|YP_504436.1| - 0.079 12.7 0.0 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain SIS PF01380.22 gi|88604259|ref|YP_504437.1| - 3.1e-18 65.9 0.0 5.9e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|88604259|ref|YP_504437.1| - 7.8e-07 29.2 0.2 0.0021 18.1 0.0 2.3 1 1 1 2 2 2 2 SIS domain AAA_30 PF13604.6 gi|88604259|ref|YP_504437.1| - 0.12 12.1 0.0 2.7 7.7 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|88604259|ref|YP_504437.1| - 0.13 12.6 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AICARFT_IMPCHas PF01808.18 gi|88604260|ref|YP_504438.1| - 4.2e-104 348.1 0.1 5.5e-104 347.8 0.1 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|88604260|ref|YP_504438.1| - 3.5e-24 84.8 0.0 6.7e-24 83.9 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain BING4CT PF08149.11 gi|88604260|ref|YP_504438.1| - 0.025 14.3 0.0 0.061 13.1 0.0 1.6 1 0 0 1 1 1 0 BING4CT (NUC141) domain tRNA_NucTransf2 PF09249.11 gi|88604260|ref|YP_504438.1| - 0.13 12.5 0.0 0.34 11.2 0.0 1.7 1 0 0 1 1 1 0 tRNA nucleotidyltransferase, second domain DUF3821 PF12863.7 gi|88604261|ref|YP_504439.1| - 1.1e-48 165.9 0.1 1.5e-48 165.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) EVI2A PF05399.11 gi|88604261|ref|YP_504439.1| - 0.073 12.6 1.9 1.3 8.6 0.4 2.1 1 1 1 2 2 2 0 Ectropic viral integration site 2A protein (EVI2A) CitMHS PF03600.16 gi|88604262|ref|YP_504440.1| - 1.2e-30 106.7 26.8 1.2e-30 106.7 26.8 1.9 1 1 1 2 2 2 2 Citrate transporter DUF2975 PF11188.8 gi|88604262|ref|YP_504440.1| - 2.9 7.8 23.2 0.29 11.0 0.2 5.0 4 2 1 5 5 5 0 Protein of unknown function (DUF2975) Response_reg PF00072.24 gi|88604263|ref|YP_504441.1| - 8.7e-23 80.6 0.1 9.9e-23 80.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HTH_3 PF01381.22 gi|88604264|ref|YP_504442.1| - 7.3e-16 58.0 0.0 8e-16 57.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|88604264|ref|YP_504442.1| - 6.7e-10 38.8 0.0 7.2e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|88604264|ref|YP_504442.1| - 1.9e-07 31.3 0.0 2.2e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|88604264|ref|YP_504442.1| - 2.4e-06 27.9 0.0 2.8e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|88604264|ref|YP_504442.1| - 0.0022 17.9 0.0 0.0041 17.1 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain CENP-B_N PF04218.13 gi|88604264|ref|YP_504442.1| - 0.0024 17.5 0.3 0.023 14.3 0.1 2.0 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Sigma70_r4 PF04545.16 gi|88604264|ref|YP_504442.1| - 0.0026 17.2 0.1 0.0054 16.2 0.0 1.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_25 PF13413.6 gi|88604264|ref|YP_504442.1| - 0.0027 17.5 0.0 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|88604264|ref|YP_504442.1| - 0.011 15.6 0.0 0.031 14.2 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|88604264|ref|YP_504442.1| - 0.016 15.0 0.0 0.031 14.1 0.0 1.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|88604264|ref|YP_504442.1| - 0.017 15.2 0.0 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|88604264|ref|YP_504442.1| - 0.026 14.1 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|88604264|ref|YP_504442.1| - 0.031 14.1 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|88604264|ref|YP_504442.1| - 0.038 13.9 0.0 0.076 12.9 0.0 1.5 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.6 gi|88604264|ref|YP_504442.1| - 0.046 13.9 0.0 0.077 13.1 0.0 1.4 2 0 0 2 2 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|88604264|ref|YP_504442.1| - 0.066 12.9 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 TetR_N PF00440.23 gi|88604264|ref|YP_504442.1| - 0.067 13.0 0.0 0.14 12.0 0.0 1.5 2 0 0 2 2 1 0 Bacterial regulatory proteins, tetR family HTH_38 PF13936.6 gi|88604264|ref|YP_504442.1| - 0.073 12.9 0.0 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|88604264|ref|YP_504442.1| - 0.073 13.2 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase YdaS_antitoxin PF15943.5 gi|88604264|ref|YP_504442.1| - 0.076 12.9 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF2178 PF09946.9 gi|88604265|ref|YP_504443.1| - 2e-28 98.7 6.1 2.3e-28 98.5 6.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3902 PF13042.6 gi|88604265|ref|YP_504443.1| - 0.00012 21.7 1.4 0.00019 21.0 1.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3902) ATG27 PF09451.10 gi|88604265|ref|YP_504443.1| - 0.024 14.5 1.2 0.031 14.1 1.2 1.2 1 0 0 1 1 1 0 Autophagy-related protein 27 TssO PF17561.2 gi|88604265|ref|YP_504443.1| - 2.5 8.2 7.5 0.25 11.4 2.2 1.9 2 0 0 2 2 2 0 Type VI secretion system, TssO FtsX PF02687.21 gi|88604265|ref|YP_504443.1| - 4.8 7.7 14.0 60 4.2 14.0 2.4 1 1 0 1 1 1 0 FtsX-like permease family HisKA_2 PF07568.12 gi|88604266|ref|YP_504444.1| - 1.7e-26 92.1 1.3 2.1e-25 88.6 0.2 3.0 3 0 0 3 3 3 1 Histidine kinase Response_reg PF00072.24 gi|88604266|ref|YP_504444.1| - 2.8e-23 82.2 0.1 6.3e-23 81.1 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88604266|ref|YP_504444.1| - 4.7e-20 71.9 0.0 3.3e-05 24.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|88604266|ref|YP_504444.1| - 1.7e-18 66.8 0.0 2.9e-08 33.9 0.0 4.3 5 0 0 5 5 5 3 PAS domain PAS PF00989.25 gi|88604266|ref|YP_504444.1| - 3e-16 59.4 0.0 2.4e-06 27.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|88604266|ref|YP_504444.1| - 6.7e-11 42.0 0.2 0.0031 17.5 0.0 4.3 4 0 0 4 4 4 3 PAS domain HWE_HK PF07536.14 gi|88604266|ref|YP_504444.1| - 4.9e-06 27.2 0.2 1.4e-05 25.7 0.1 1.9 2 0 0 2 2 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|88604266|ref|YP_504444.1| - 2.2e-05 24.4 0.0 4.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|88604266|ref|YP_504444.1| - 2.4e-05 24.8 0.0 7.7e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|88604266|ref|YP_504444.1| - 0.00019 21.7 0.0 0.00091 19.5 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|88604266|ref|YP_504444.1| - 0.0074 16.6 0.0 0.029 14.7 0.0 2.1 1 1 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|88604266|ref|YP_504444.1| - 0.018 15.3 0.0 0.081 13.2 0.0 2.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Response_reg PF00072.24 gi|88604267|ref|YP_504445.1| - 9.8e-27 93.3 0.0 5.4e-26 91.0 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|88604267|ref|YP_504445.1| - 1.2e-15 58.0 0.0 1.8e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88604267|ref|YP_504445.1| - 6e-12 45.4 0.0 1.4e-11 44.2 0.0 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|88604267|ref|YP_504445.1| - 0.0021 17.9 0.0 0.0049 16.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|88604267|ref|YP_504445.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B12-binding PF02310.19 gi|88604267|ref|YP_504445.1| - 0.084 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain HATPase_c_2 PF13581.6 gi|88604267|ref|YP_504445.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 gi|88604268|ref|YP_504446.1| - 7.3e-27 93.8 0.2 8.2e-27 93.6 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|88604269|ref|YP_504447.1| - 2.2e-24 85.8 0.0 2.4e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PKD PF00801.20 gi|88604270|ref|YP_504448.1| - 4.3e-12 45.7 12.6 2.4e-06 27.3 0.2 3.9 6 0 0 6 6 6 2 PKD domain Peptidase_M13_N PF05649.13 gi|88604271|ref|YP_504449.1| - 1.9e-66 225.3 0.2 2.5e-66 224.9 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 gi|88604271|ref|YP_504449.1| - 3.1e-47 160.8 0.1 6.8e-47 159.7 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M13 ParD PF09386.10 gi|88604271|ref|YP_504449.1| - 0.18 12.2 0.2 3 8.3 0.0 2.7 3 0 0 3 3 3 0 Antitoxin ParD CSTF1_dimer PF16699.5 gi|88604272|ref|YP_504450.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Cleavage stimulation factor subunit 1, dimerisation domain CarboxypepD_reg PF13620.6 gi|88604272|ref|YP_504450.1| - 0.12 12.7 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain AglB_L1 PF18079.1 gi|88604272|ref|YP_504450.1| - 0.17 12.2 0.0 0.27 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal glycosylation protein B long peripheral domain TPR_1 PF00515.28 gi|88604273|ref|YP_504451.1| - 1.6e-10 40.4 0.0 2.7e-09 36.4 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88604273|ref|YP_504451.1| - 1.8e-08 33.9 0.0 5.5e-06 26.1 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88604273|ref|YP_504451.1| - 1.8e-05 24.6 0.0 0.00015 21.7 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604273|ref|YP_504451.1| - 0.00044 20.8 0.0 0.00091 19.8 0.0 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604273|ref|YP_504451.1| - 0.00062 19.6 0.0 0.002 18.0 0.0 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604273|ref|YP_504451.1| - 0.00062 20.0 0.1 0.066 13.5 0.0 2.1 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604273|ref|YP_504451.1| - 0.0011 18.6 0.0 0.82 9.4 0.0 2.4 1 1 1 2 2 2 2 TPR repeat TPR_14 PF13428.6 gi|88604273|ref|YP_504451.1| - 0.0059 17.3 0.0 0.23 12.4 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604273|ref|YP_504451.1| - 0.021 15.3 0.0 0.04 14.4 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88604273|ref|YP_504451.1| - 0.031 14.2 1.6 1.7 8.6 0.0 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604273|ref|YP_504451.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 CBM_11 PF03425.13 gi|88604274|ref|YP_504452.1| - 0.0012 18.7 0.0 0.0033 17.3 0.0 1.8 1 0 0 1 1 1 1 Carbohydrate binding domain (family 11) Arylsulfotrans PF05935.11 gi|88604274|ref|YP_504452.1| - 0.0042 16.0 2.5 0.0064 15.5 0.1 2.2 3 0 0 3 3 3 1 Arylsulfotransferase (ASST) Dockerin_1 PF00404.18 gi|88604274|ref|YP_504452.1| - 0.088 13.0 0.2 0.64 10.2 0.0 2.7 2 1 1 3 3 3 0 Dockerin type I domain Cohesin PF00963.18 gi|88604275|ref|YP_504453.1| - 0.00021 21.6 1.9 0.0019 18.4 2.3 2.2 2 0 0 2 2 2 1 Cohesin domain Cadherin-like PF12733.7 gi|88604275|ref|YP_504453.1| - 0.09 13.3 0.3 8.5 7.0 0.0 3.3 2 1 2 4 4 4 0 Cadherin-like beta sandwich domain DUF1522 PF07482.11 gi|88604275|ref|YP_504453.1| - 1.6 9.1 11.7 0.39 11.0 2.9 2.8 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1522) ASH PF15780.5 gi|88604276|ref|YP_504454.1| - 0.032 14.4 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Pyr_redox_2 PF07992.14 gi|88604277|ref|YP_504455.1| - 1.6e-36 126.1 1.4 2.4e-36 125.5 1.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|88604277|ref|YP_504455.1| - 9.3e-20 71.1 0.2 7.3e-14 51.7 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|88604277|ref|YP_504455.1| - 4.2e-15 55.7 0.1 1.1e-14 54.3 0.1 1.8 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.27 gi|88604277|ref|YP_504455.1| - 4.8e-09 36.7 1.9 8.2e-07 29.5 0.7 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|88604277|ref|YP_504455.1| - 1.4e-07 31.0 6.0 8.6e-05 21.8 0.1 4.6 3 2 1 5 5 5 1 FAD binding domain Thi4 PF01946.17 gi|88604277|ref|YP_504455.1| - 6e-07 28.9 0.6 1.6e-05 24.2 0.0 2.5 2 1 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|88604277|ref|YP_504455.1| - 1.4e-06 28.4 0.1 0.00037 20.7 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|88604277|ref|YP_504455.1| - 6.1e-06 25.8 0.0 6.1e-06 25.8 0.0 1.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase GST_N_3 PF13417.6 gi|88604277|ref|YP_504455.1| - 2.3e-05 24.7 0.0 4.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GIDA PF01134.22 gi|88604277|ref|YP_504455.1| - 3.6e-05 23.0 5.0 0.00028 20.1 0.0 3.5 4 0 0 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|88604277|ref|YP_504455.1| - 4.6e-05 22.3 2.4 0.0027 16.5 0.1 3.3 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|88604277|ref|YP_504455.1| - 0.00041 20.0 0.9 0.0083 15.7 0.0 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|88604277|ref|YP_504455.1| - 0.0012 19.3 0.1 2.5 8.6 0.1 2.9 3 1 0 3 3 3 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|88604277|ref|YP_504455.1| - 0.0019 17.5 0.6 0.015 14.6 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|88604277|ref|YP_504455.1| - 0.004 16.2 1.6 0.012 14.7 0.2 2.2 2 1 1 3 3 3 1 Lycopene cyclase protein PALP PF00291.25 gi|88604277|ref|YP_504455.1| - 0.0091 15.4 0.5 0.3 10.4 0.1 2.1 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme FMO-like PF00743.19 gi|88604277|ref|YP_504455.1| - 0.012 14.1 0.1 0.26 9.7 0.0 2.2 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 gi|88604277|ref|YP_504455.1| - 0.015 14.4 0.6 3.1 6.8 0.1 2.5 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|88604277|ref|YP_504455.1| - 0.021 14.8 0.3 9.4 6.2 0.1 3.5 4 0 0 4 4 4 0 FAD-NAD(P)-binding DUF836 PF05768.14 gi|88604277|ref|YP_504455.1| - 0.035 14.5 0.0 0.36 11.3 0.0 2.3 2 0 0 2 2 2 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|88604277|ref|YP_504455.1| - 0.041 14.3 0.0 0.095 13.2 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain Trp_halogenase PF04820.14 gi|88604277|ref|YP_504455.1| - 0.14 11.0 1.7 0.86 8.4 0.1 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GP3 PF03076.14 gi|88604277|ref|YP_504455.1| - 0.21 11.6 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Equine arteritis virus GP3 AAA_14 PF13173.6 gi|88604278|ref|YP_504456.1| - 2.1e-36 124.8 0.0 5.2e-36 123.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|88604278|ref|YP_504456.1| - 3e-10 40.3 0.1 4.8e-10 39.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|88604278|ref|YP_504456.1| - 0.0019 18.5 0.0 0.016 15.5 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|88604278|ref|YP_504456.1| - 0.0057 17.1 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain PDDEXK_5 PF11645.8 gi|88604278|ref|YP_504456.1| - 0.074 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease N6_N4_Mtase PF01555.18 gi|88604279|ref|YP_504457.1| - 7e-14 52.1 0.0 3.5e-09 36.7 0.0 2.3 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|88604279|ref|YP_504457.1| - 3.5e-05 23.6 0.0 0.00011 21.9 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HyaE PF07449.11 gi|88604279|ref|YP_504457.1| - 0.0011 19.0 0.0 0.0026 17.7 0.0 1.6 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE MethyltransfD12 PF02086.15 gi|88604279|ref|YP_504457.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Met_10 PF02475.16 gi|88604279|ref|YP_504457.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein CCG PF02754.16 gi|88604280|ref|YP_504458.1| - 1.5e-32 111.6 4.2 2.4e-15 56.5 0.2 2.9 3 0 0 3 3 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|88604280|ref|YP_504458.1| - 3.7e-24 84.8 0.0 1.1e-23 83.3 0.0 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|88604280|ref|YP_504458.1| - 1.3e-09 38.3 3.6 1.3e-09 38.3 3.6 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88604280|ref|YP_504458.1| - 4.7e-08 33.1 5.3 4.7e-08 33.1 5.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|88604280|ref|YP_504458.1| - 1.3e-07 31.6 0.9 4.5e-07 29.8 0.2 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|88604280|ref|YP_504458.1| - 3.7e-07 30.6 5.2 3.7e-07 30.6 5.2 3.2 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88604280|ref|YP_504458.1| - 1e-06 29.2 10.9 3.7e-06 27.4 4.9 3.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|88604280|ref|YP_504458.1| - 5.7e-06 26.2 0.3 5.7e-06 26.2 0.3 2.9 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.6 gi|88604280|ref|YP_504458.1| - 1.5e-05 25.0 3.3 0.0032 17.6 0.2 4.1 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|88604280|ref|YP_504458.1| - 0.014 16.3 10.4 0.014 16.3 10.4 3.5 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|88604280|ref|YP_504458.1| - 0.02 15.1 15.1 0.063 13.5 1.8 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|88604280|ref|YP_504458.1| - 0.022 15.2 0.8 0.022 15.2 0.8 4.9 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4 PF00037.27 gi|88604280|ref|YP_504458.1| - 0.027 14.3 1.9 0.027 14.3 1.9 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88604280|ref|YP_504458.1| - 0.037 14.1 2.4 0.037 14.1 2.4 4.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|88604280|ref|YP_504458.1| - 0.081 13.1 0.4 0.081 13.1 0.4 4.3 5 0 0 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|88604280|ref|YP_504458.1| - 0.089 13.3 13.2 1.8 9.2 2.6 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|88604280|ref|YP_504458.1| - 0.1 13.3 4.6 0.56 11.0 0.1 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain FAD_binding_2 PF00890.24 gi|88604281|ref|YP_504459.1| - 9.5e-95 318.1 7.3 1.2e-94 317.7 7.3 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|88604281|ref|YP_504459.1| - 2.1e-14 53.6 0.2 5e-14 52.4 0.2 1.6 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|88604281|ref|YP_504459.1| - 1.4e-10 40.9 0.0 0.00021 20.7 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|88604281|ref|YP_504459.1| - 0.0063 16.1 3.7 0.024 14.2 0.4 3.0 2 1 0 4 4 4 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|88604281|ref|YP_504459.1| - 0.0085 15.4 1.4 0.73 9.0 0.3 2.8 3 0 0 3 3 3 1 Thi4 family DUF4128 PF13554.6 gi|88604281|ref|YP_504459.1| - 0.028 14.5 0.0 2 8.5 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage related domain of unknown function FAD_oxidored PF12831.7 gi|88604281|ref|YP_504459.1| - 0.03 13.7 3.3 0.048 13.0 2.6 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|88604281|ref|YP_504459.1| - 0.078 11.7 7.6 0.19 10.4 4.7 2.6 2 1 0 2 2 2 0 HI0933-like protein GIDA PF01134.22 gi|88604281|ref|YP_504459.1| - 0.85 8.6 5.5 0.56 9.2 3.4 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A AA_kinase PF00696.28 gi|88604282|ref|YP_504460.1| - 2.3e-49 168.2 0.0 4.3e-49 167.3 0.0 1.5 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.25 gi|88604282|ref|YP_504460.1| - 5.7e-22 77.2 0.4 6.7e-11 41.8 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|88604282|ref|YP_504460.1| - 1.3e-21 76.1 1.5 2.6e-10 39.9 0.0 2.6 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.10 gi|88604282|ref|YP_504460.1| - 0.00054 20.1 0.2 2.3 8.4 0.0 4.4 4 0 0 4 4 4 1 Putative prokaryotic signal transducing protein DUF5612 PF18462.1 gi|88604282|ref|YP_504460.1| - 0.019 14.7 0.6 0.046 13.5 0.6 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) AIRS_C PF02769.22 gi|88604283|ref|YP_504461.1| - 1.1e-22 80.9 0.0 1.6e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|88604283|ref|YP_504461.1| - 1.6e-13 51.1 0.4 3.3e-13 50.1 0.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain zf-ZPR1 PF03367.13 gi|88604284|ref|YP_504462.1| - 2.2e-37 128.4 0.1 2.5e-37 128.2 0.1 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|88604284|ref|YP_504462.1| - 0.017 15.2 7.0 0.3 11.2 1.9 3.0 3 0 0 3 3 3 0 Zinc ribbon domain YacG PF03884.14 gi|88604284|ref|YP_504462.1| - 0.027 14.2 2.5 0.17 11.6 0.1 2.4 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG DiS_P_DiS PF06750.13 gi|88604284|ref|YP_504462.1| - 0.1 12.7 0.7 0.1 12.7 0.7 2.3 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DpnI PF06044.12 gi|88604284|ref|YP_504462.1| - 0.14 11.8 4.0 0.11 12.1 1.3 2.0 1 1 1 2 2 2 0 Dam-replacing family zinc-ribbons_6 PF07191.12 gi|88604284|ref|YP_504462.1| - 0.27 11.2 7.4 2 8.5 5.0 2.7 2 1 0 2 2 2 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|88604284|ref|YP_504462.1| - 0.28 11.2 7.9 6.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|88604284|ref|YP_504462.1| - 0.35 10.9 7.6 1.2 9.2 5.0 2.7 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|88604284|ref|YP_504462.1| - 0.43 10.4 7.2 4.2 7.2 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|88604284|ref|YP_504462.1| - 0.71 9.9 5.3 0.38 10.8 1.0 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|88604284|ref|YP_504462.1| - 0.9 9.0 9.0 5 6.7 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|88604284|ref|YP_504462.1| - 1.2 9.6 9.1 76 3.8 9.1 2.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar FYDLN_acid PF09538.10 gi|88604284|ref|YP_504462.1| - 1.4 9.6 4.1 11 6.7 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.12 gi|88604284|ref|YP_504462.1| - 2.6 7.6 10.5 22 4.6 0.1 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|88604284|ref|YP_504462.1| - 4.3 7.4 9.0 0.67 10.0 2.3 2.5 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger ADK_lid PF05191.14 gi|88604284|ref|YP_504462.1| - 6.2 6.9 9.7 26 4.9 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF983 PF06170.12 gi|88604284|ref|YP_504462.1| - 7.3 7.1 5.3 42 4.7 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF983) SepF PF04472.12 gi|88604285|ref|YP_504463.1| - 1.1e-14 54.5 2.6 1.4e-14 54.1 2.6 1.2 1 0 0 1 1 1 1 Cell division protein SepF PUA PF01472.20 gi|88604286|ref|YP_504464.1| - 2.4e-18 65.8 0.3 3.8e-18 65.2 0.3 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|88604286|ref|YP_504464.1| - 3.4e-05 24.0 0.0 6.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|88604286|ref|YP_504464.1| - 0.00052 20.2 0.0 0.0026 18.0 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|88604286|ref|YP_504464.1| - 0.014 16.0 0.0 0.027 15.1 0.0 1.5 1 1 0 1 1 1 0 Pre-PUA-like domain LSM PF01423.22 gi|88604287|ref|YP_504465.1| - 3.6e-21 74.6 0.2 4.4e-21 74.3 0.2 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|88604287|ref|YP_504465.1| - 0.0016 18.5 0.1 0.0029 17.7 0.1 1.4 1 1 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|88604287|ref|YP_504465.1| - 0.054 13.1 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Hfq protein Ribosomal_L37e PF01907.19 gi|88604288|ref|YP_504466.1| - 1.1e-21 76.7 11.9 1.2e-21 76.5 11.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e FYVE_2 PF02318.16 gi|88604288|ref|YP_504466.1| - 0.0015 18.7 1.5 0.0017 18.5 1.5 1.1 1 0 0 1 1 1 1 FYVE-type zinc finger DZR PF12773.7 gi|88604288|ref|YP_504466.1| - 0.0057 16.7 1.7 0.0072 16.3 1.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|88604288|ref|YP_504466.1| - 0.12 12.4 0.9 0.14 12.2 0.9 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|88604288|ref|YP_504466.1| - 0.15 11.9 4.9 0.22 11.4 4.9 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|88604288|ref|YP_504466.1| - 0.18 12.1 8.7 0.3 11.4 7.6 1.9 1 1 1 2 2 2 0 Ribosomal L32p protein family ADK_lid PF05191.14 gi|88604288|ref|YP_504466.1| - 0.3 11.1 7.1 1.2 9.2 6.8 2.0 2 1 0 2 2 2 0 Adenylate kinase, active site lid zn-ribbon_14 PF16503.5 gi|88604288|ref|YP_504466.1| - 1.5 8.4 7.2 9.4 5.8 7.0 2.2 1 1 1 2 2 2 0 Zinc-ribbon HEPN PF05168.14 gi|88604289|ref|YP_504467.1| - 5.9e-31 107.0 0.1 1.1e-30 106.1 0.1 1.5 1 0 0 1 1 1 1 HEPN domain GATase_7 PF13537.6 gi|88604289|ref|YP_504467.1| - 1.7e-19 69.9 0.0 3.2e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|88604289|ref|YP_504467.1| - 6.1e-19 68.6 0.0 1.1e-18 67.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|88604289|ref|YP_504467.1| - 2.1e-08 33.4 0.0 3.1e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|88604289|ref|YP_504467.1| - 0.00014 21.4 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|88604289|ref|YP_504467.1| - 0.016 13.9 0.0 1.9 7.1 0.0 2.2 2 0 0 2 2 2 0 Glutamine amidotransferases class-II UPRTase PF14681.6 gi|88604289|ref|YP_504467.1| - 0.018 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|88604289|ref|YP_504467.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Polbeta PF18765.1 gi|88604290|ref|YP_504468.1| - 2.8e-13 49.7 0.2 5.5e-13 48.8 0.1 1.5 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88604290|ref|YP_504468.1| - 1.9e-10 40.9 0.1 3.3e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SpoIISA_toxin PF14171.6 gi|88604290|ref|YP_504468.1| - 0.076 12.7 0.4 0.12 12.1 0.1 1.5 2 0 0 2 2 2 0 Toxin SpoIISA, type II toxin-antitoxin system Adenyl_cycl_N PF12633.7 gi|88604290|ref|YP_504468.1| - 0.087 12.7 0.0 0.36 10.7 0.0 1.9 1 1 0 1 1 1 0 Adenylate cyclase NT domain 2-Hacid_dh_C PF02826.19 gi|88604291|ref|YP_504469.1| - 1.9e-65 219.6 0.0 3e-65 218.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|88604291|ref|YP_504469.1| - 5.3e-37 126.5 3.0 8.4e-37 125.8 0.4 2.3 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|88604291|ref|YP_504469.1| - 6.2e-13 48.3 0.2 2.1e-12 46.6 0.1 2.0 2 0 0 2 2 2 1 ACT domain IlvN PF07991.12 gi|88604291|ref|YP_504469.1| - 0.00052 19.6 0.1 0.0011 18.6 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|88604291|ref|YP_504469.1| - 0.001 19.3 1.1 0.0023 18.1 0.2 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|88604291|ref|YP_504469.1| - 0.0089 16.3 0.5 0.44 10.9 0.0 3.0 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACT_4 PF13291.6 gi|88604291|ref|YP_504469.1| - 0.047 14.3 0.0 0.2 12.3 0.0 2.1 1 1 0 1 1 1 0 ACT domain MannoseP_isomer PF01050.18 gi|88604293|ref|YP_504471.1| - 2.6e-60 202.7 0.0 4.9e-60 201.8 0.0 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|88604293|ref|YP_504471.1| - 4.9e-57 193.4 0.0 8.8e-57 192.5 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|88604293|ref|YP_504471.1| - 2.8e-12 46.2 0.5 5e-12 45.4 0.5 1.4 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|88604293|ref|YP_504471.1| - 8.6e-08 32.7 0.0 2e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|88604293|ref|YP_504471.1| - 2.5e-05 24.2 0.2 4.9e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 gi|88604293|ref|YP_504471.1| - 0.014 15.1 0.1 0.036 13.8 0.1 1.6 1 0 0 1 1 1 0 Cupin IspD PF01128.19 gi|88604293|ref|YP_504471.1| - 0.062 13.0 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase STT3 PF02516.14 gi|88604294|ref|YP_504472.1| - 4.2e-16 58.9 40.3 8.6e-16 57.9 40.3 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|88604294|ref|YP_504472.1| - 4.4e-10 39.7 0.2 1.1e-09 38.4 0.1 1.8 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain Glycos_transf_2 PF00535.26 gi|88604295|ref|YP_504473.1| - 9.5e-27 93.9 0.0 1.3e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88604295|ref|YP_504473.1| - 2.2e-08 34.3 0.0 3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF373 PF04123.13 gi|88604295|ref|YP_504473.1| - 0.69 9.3 8.3 1.5 8.2 8.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Acylphosphatase PF00708.18 gi|88604296|ref|YP_504474.1| - 2.8e-17 62.9 0.5 6.6e-17 61.7 0.0 1.8 2 0 0 2 2 2 1 Acylphosphatase DUF3552 PF12072.8 gi|88604296|ref|YP_504474.1| - 0.0054 16.2 23.5 0.022 14.2 9.7 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) Exonuc_VII_L PF02601.15 gi|88604296|ref|YP_504474.1| - 0.14 11.7 13.3 0.2 11.2 13.3 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF234 PF03008.14 gi|88604297|ref|YP_504475.1| - 0.0072 16.8 0.2 0.013 16.0 0.1 1.5 1 1 1 2 2 2 1 Archaea bacterial proteins of unknown function Antimicrobial_4 PF08024.11 gi|88604297|ref|YP_504475.1| - 0.25 11.4 2.0 0.49 10.5 2.0 1.4 1 0 0 1 1 1 0 Ant antimicrobial peptide NTP_transf_2 PF01909.23 gi|88604298|ref|YP_504476.1| - 2.5e-09 37.3 0.1 3e-09 37.0 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|88604298|ref|YP_504476.1| - 4.8e-08 33.0 0.1 8.5e-08 32.2 0.1 1.6 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|88604298|ref|YP_504476.1| - 0.013 15.7 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|88604299|ref|YP_504477.1| - 4.6e-12 46.1 0.0 5.1e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 HEPN domain GDP_Man_Dehyd PF16363.5 gi|88604300|ref|YP_504478.1| - 3.1e-94 316.1 0.0 3.5e-94 315.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|88604300|ref|YP_504478.1| - 4.2e-61 206.5 0.0 5.4e-61 206.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|88604300|ref|YP_504478.1| - 1.5e-12 47.3 0.0 2.5e-12 46.6 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|88604300|ref|YP_504478.1| - 2.4e-10 40.1 0.0 4.6e-09 35.8 0.0 2.5 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|88604300|ref|YP_504478.1| - 3.1e-10 39.7 0.0 3.9e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|88604300|ref|YP_504478.1| - 2.2e-09 36.7 0.0 4.1e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|88604300|ref|YP_504478.1| - 0.0016 17.9 0.0 0.071 12.6 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|88604300|ref|YP_504478.1| - 0.022 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 KR domain NAD_binding_10 PF13460.6 gi|88604300|ref|YP_504478.1| - 0.18 11.7 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|88604301|ref|YP_504479.1| - 5.3e-90 301.4 0.0 5.9e-90 301.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|88604301|ref|YP_504479.1| - 8.4e-21 74.5 0.1 1.1e-20 74.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88604301|ref|YP_504479.1| - 1e-10 41.6 0.8 3.5e-09 36.5 0.1 2.3 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|88604301|ref|YP_504479.1| - 1.1e-07 31.3 0.7 1.7e-06 27.4 0.1 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|88604301|ref|YP_504479.1| - 2.4e-07 30.2 0.1 7.1e-07 28.6 0.0 1.8 2 1 0 2 2 2 1 Male sterility protein CdhD PF03599.16 gi|88604301|ref|YP_504479.1| - 0.13 11.0 0.1 0.18 10.5 0.1 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit adh_short PF00106.25 gi|88604301|ref|YP_504479.1| - 0.15 11.5 0.1 6.1 6.2 0.0 2.2 1 1 1 2 2 2 0 short chain dehydrogenase dTDP_sugar_isom PF00908.17 gi|88604302|ref|YP_504480.1| - 1.3e-69 233.2 0.0 1.4e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.23 gi|88604303|ref|YP_504481.1| - 1.1e-67 228.2 0.0 1.3e-67 228.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|88604303|ref|YP_504481.1| - 6.1e-10 39.7 0.0 7.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|88604303|ref|YP_504481.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_1 PF00534.20 gi|88604304|ref|YP_504482.1| - 2.7e-26 92.1 0.0 6.2e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88604304|ref|YP_504482.1| - 3.5e-16 59.9 0.0 5.5e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88604304|ref|YP_504482.1| - 9e-08 32.3 0.0 1.4e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.19 gi|88604304|ref|YP_504482.1| - 0.0093 14.9 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase ALG11_N PF15924.5 gi|88604304|ref|YP_504482.1| - 0.07 13.2 1.2 0.35 10.9 0.0 2.5 3 0 0 3 3 3 0 ALG11 mannosyltransferase N-terminus Glyco_trans_1_2 PF13524.6 gi|88604304|ref|YP_504482.1| - 0.13 12.6 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|88604305|ref|YP_504483.1| - 6.5e-27 94.4 0.0 1.2e-26 93.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88604305|ref|YP_504483.1| - 2e-10 41.0 0.0 1.6e-09 38.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|88604305|ref|YP_504483.1| - 2e-09 37.6 0.0 2.9e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|88604305|ref|YP_504483.1| - 2.8e-09 36.9 1.5 1.5e-08 34.4 1.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|88604305|ref|YP_504483.1| - 7.8e-07 28.7 0.3 2e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase UDPG_MGDP_dh_N PF03721.14 gi|88604306|ref|YP_504484.1| - 1.1e-59 201.2 0.0 1.7e-59 200.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|88604306|ref|YP_504484.1| - 1.2e-39 134.4 0.0 2.2e-39 133.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|88604306|ref|YP_504484.1| - 1.5e-26 92.9 0.0 3.3e-26 91.8 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox_2 PF07992.14 gi|88604306|ref|YP_504484.1| - 4.8e-06 26.0 0.0 1e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|88604306|ref|YP_504484.1| - 7.3e-06 26.5 0.0 2.4e-05 24.8 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DpaA_N PF16924.5 gi|88604306|ref|YP_504484.1| - 7.1e-05 22.9 0.3 0.038 14.1 0.0 3.4 3 0 0 3 3 3 1 Dipicolinate synthase subunit A N-terminal domain ApbA PF02558.16 gi|88604306|ref|YP_504484.1| - 0.0007 19.3 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Spermine_synth PF01564.17 gi|88604306|ref|YP_504484.1| - 0.0012 18.2 0.7 0.26 10.7 0.1 2.4 2 1 0 2 2 2 2 Spermine/spermidine synthase domain 3HCDH_N PF02737.18 gi|88604306|ref|YP_504484.1| - 0.0063 16.4 0.0 0.017 15.0 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|88604306|ref|YP_504484.1| - 0.021 15.4 0.6 5.6 7.6 0.3 3.5 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|88604306|ref|YP_504484.1| - 0.027 13.8 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|88604306|ref|YP_504484.1| - 0.029 14.6 0.2 0.029 14.6 0.2 2.0 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|88604306|ref|YP_504484.1| - 0.03 13.9 1.0 0.054 13.1 0.6 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|88604306|ref|YP_504484.1| - 0.07 13.4 0.3 0.43 10.9 0.1 2.4 3 0 0 3 3 2 0 TrkA-N domain FAD_binding_3 PF01494.19 gi|88604306|ref|YP_504484.1| - 0.077 12.2 0.1 0.19 11.0 0.1 1.6 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.6 gi|88604306|ref|YP_504484.1| - 0.092 13.2 0.0 1.1 9.7 0.0 2.4 3 0 0 3 3 3 0 Putative NAD(P)-binding NTP_transferase PF00483.23 gi|88604307|ref|YP_504485.1| - 3.6e-28 98.8 0.0 5.6e-28 98.2 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|88604307|ref|YP_504485.1| - 3.5e-11 43.7 0.0 5.5e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88604307|ref|YP_504485.1| - 0.002 17.9 0.0 0.0046 16.7 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|88604307|ref|YP_504485.1| - 0.027 14.3 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.21 gi|88604308|ref|YP_504486.1| - 8.2e-50 169.5 0.0 9.8e-50 169.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88604308|ref|YP_504486.1| - 4.7e-48 164.3 0.0 5.8e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|88604308|ref|YP_504486.1| - 8e-11 41.6 0.0 0.00019 20.7 0.0 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|88604308|ref|YP_504486.1| - 2.3e-10 40.1 0.0 1.4e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 gi|88604308|ref|YP_504486.1| - 2.5e-09 36.6 0.0 4.2e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|88604308|ref|YP_504486.1| - 4.3e-06 26.0 0.0 6.1e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|88604308|ref|YP_504486.1| - 0.0013 18.3 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|88604308|ref|YP_504486.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 KR domain DUF1188 PF06690.11 gi|88604308|ref|YP_504486.1| - 0.19 11.3 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) TruB_C PF09142.11 gi|88604310|ref|YP_504488.1| - 0.16 11.8 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal DDE_Tnp_1 PF01609.21 gi|88604311|ref|YP_504489.1| - 3.6e-13 49.7 0.0 5.6e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Epimerase PF01370.21 gi|88604312|ref|YP_504490.1| - 2.8e-47 161.2 0.0 3.3e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88604312|ref|YP_504490.1| - 3.1e-36 125.5 0.0 1.1e-35 123.6 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|88604312|ref|YP_504490.1| - 1.9e-15 56.8 0.0 6.8e-15 55.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|88604312|ref|YP_504490.1| - 1.4e-14 53.8 0.0 1.9e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|88604312|ref|YP_504490.1| - 4.7e-13 48.9 0.0 5.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|88604312|ref|YP_504490.1| - 9.6e-09 34.8 0.0 0.0013 18.0 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|88604312|ref|YP_504490.1| - 1.9e-08 34.4 0.0 3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|88604312|ref|YP_504490.1| - 0.00012 21.8 0.1 0.00021 20.9 0.1 1.7 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|88604312|ref|YP_504490.1| - 0.08 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Glyco_tran_28_C PF04101.16 gi|88604314|ref|YP_504492.1| - 0.1 12.5 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Methyltransf_23 PF13489.6 gi|88604315|ref|YP_504493.1| - 1.8e-17 63.6 0.0 2.8e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604315|ref|YP_504493.1| - 3.4e-11 43.6 0.0 1.3e-10 41.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604315|ref|YP_504493.1| - 4.6e-10 39.5 0.2 9.1e-10 38.5 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604315|ref|YP_504493.1| - 1.4e-08 35.4 0.0 4.1e-08 33.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|88604315|ref|YP_504493.1| - 2.1e-08 34.0 0.1 4.2e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.6 gi|88604315|ref|YP_504493.1| - 4e-07 30.7 0.0 9.6e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|88604315|ref|YP_504493.1| - 6.5e-05 22.4 0.0 9.3e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|88604315|ref|YP_504493.1| - 0.00072 18.7 0.1 0.0015 17.7 0.1 1.5 1 0 0 1 1 1 1 DREV methyltransferase CRAL_TRIO PF00650.20 gi|88604315|ref|YP_504493.1| - 0.0065 16.2 0.7 0.02 14.6 0.2 2.0 2 0 0 2 2 2 1 CRAL/TRIO domain NodS PF05401.11 gi|88604315|ref|YP_504493.1| - 0.012 15.3 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_PK PF05891.12 gi|88604315|ref|YP_504493.1| - 0.016 14.8 0.3 0.2 11.1 0.1 2.2 2 0 0 2 2 2 0 AdoMet dependent proline di-methyltransferase DNA_repr_REX1B PF14966.6 gi|88604315|ref|YP_504493.1| - 0.055 14.1 1.0 0.2 12.3 0.7 2.1 2 0 0 2 2 2 0 DNA repair REX1-B PrmA PF06325.13 gi|88604315|ref|YP_504493.1| - 0.11 11.9 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ABC_tran PF00005.27 gi|88604316|ref|YP_504494.1| - 7.1e-24 84.9 0.0 1.2e-22 80.9 0.0 2.5 2 1 0 2 2 2 1 ABC transporter Wzt_C PF14524.6 gi|88604316|ref|YP_504494.1| - 4.3e-11 43.0 0.0 8.9e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_21 PF13304.6 gi|88604316|ref|YP_504494.1| - 7.1e-05 22.8 4.4 9.6e-05 22.3 0.6 2.7 1 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|88604316|ref|YP_504494.1| - 0.00067 19.4 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|88604316|ref|YP_504494.1| - 0.009 15.8 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|88604316|ref|YP_504494.1| - 0.013 16.0 0.7 0.027 15.0 0.1 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|88604316|ref|YP_504494.1| - 0.023 14.7 0.7 0.084 13.0 0.8 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|88604316|ref|YP_504494.1| - 0.086 13.4 0.0 0.18 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|88604316|ref|YP_504494.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|88604316|ref|YP_504494.1| - 0.15 11.8 0.1 0.36 10.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|88604316|ref|YP_504494.1| - 0.27 10.9 0.9 0.62 9.8 0.2 1.9 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|88604317|ref|YP_504495.1| - 6.9e-21 74.6 29.4 6.9e-21 74.6 29.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|88604317|ref|YP_504495.1| - 3.2e-05 23.2 27.6 3.2e-05 23.2 27.6 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein Polysacc_synt_2 PF02719.15 gi|88604318|ref|YP_504496.1| - 5.7e-100 334.2 0.0 6.6e-100 334.0 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|88604318|ref|YP_504496.1| - 2.3e-22 79.6 0.2 2.2e-21 76.4 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|88604318|ref|YP_504496.1| - 8.1e-19 67.7 0.0 4.4e-18 65.3 0.0 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|88604318|ref|YP_504496.1| - 1.1e-14 54.6 0.1 1.3e-13 51.1 0.1 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|88604318|ref|YP_504496.1| - 1.1e-10 41.1 0.0 3.4e-09 36.2 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|88604318|ref|YP_504496.1| - 3.5e-09 36.8 0.0 5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|88604318|ref|YP_504496.1| - 2.1e-07 30.4 0.5 0.00039 19.7 0.1 3.0 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|88604318|ref|YP_504496.1| - 1.1e-05 25.2 0.0 1.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|88604318|ref|YP_504496.1| - 4.6e-05 23.4 0.0 7.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 KR domain adh_short PF00106.25 gi|88604318|ref|YP_504496.1| - 0.00024 20.6 0.0 0.00039 19.9 0.0 1.4 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|88604318|ref|YP_504496.1| - 0.00039 20.7 0.0 0.00091 19.5 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|88604318|ref|YP_504496.1| - 0.014 16.0 0.0 0.04 14.5 0.0 1.8 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|88604318|ref|YP_504496.1| - 0.094 12.7 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Polbeta PF18765.1 gi|88604319|ref|YP_504497.1| - 1.4e-09 37.9 0.0 1.8e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|88604319|ref|YP_504497.1| - 2e-09 37.6 0.0 3.1e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain NTP_transf_7 PF07984.12 gi|88604319|ref|YP_504497.1| - 0.034 13.4 0.0 0.04 13.2 0.0 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase HEPN PF05168.14 gi|88604320|ref|YP_504498.1| - 7.1e-28 97.1 0.2 7.8e-28 97.0 0.2 1.0 1 0 0 1 1 1 1 HEPN domain DegT_DnrJ_EryC1 PF01041.17 gi|88604321|ref|YP_504499.1| - 8.1e-126 420.1 0.0 9.3e-126 420.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|88604321|ref|YP_504499.1| - 4.2e-09 35.4 0.1 6e-09 34.9 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|88604321|ref|YP_504499.1| - 3.8e-08 32.7 0.0 4.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|88604321|ref|YP_504499.1| - 8.1e-08 31.8 0.1 2.4e-07 30.2 0.1 1.8 2 1 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|88604321|ref|YP_504499.1| - 1.3e-05 24.6 0.0 2.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.19 gi|88604321|ref|YP_504499.1| - 0.0076 14.9 0.0 0.0096 14.5 0.0 1.3 1 0 0 1 1 1 1 Serine hydroxymethyltransferase CTP_transf_3 PF02348.19 gi|88604322|ref|YP_504500.1| - 2.6e-36 125.6 0.0 3.2e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|88604322|ref|YP_504500.1| - 1.4e-08 35.2 0.0 1.5e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88604322|ref|YP_504500.1| - 0.00084 19.1 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Methyltransf_23 PF13489.6 gi|88604323|ref|YP_504501.1| - 1.7e-05 24.7 0.0 2.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604323|ref|YP_504501.1| - 6.3e-05 23.7 0.0 0.00012 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|88604323|ref|YP_504501.1| - 0.055 12.7 0.0 0.1 11.9 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.6 gi|88604323|ref|YP_504501.1| - 0.078 13.7 0.0 0.16 12.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Acetone_carb_G PF08882.11 gi|88604323|ref|YP_504501.1| - 0.16 12.1 0.5 1.1 9.4 0.3 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Methyltransf_11 PF08241.12 gi|88604323|ref|YP_504501.1| - 0.18 12.5 0.0 0.33 11.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Acetyltransf_3 PF13302.7 gi|88604324|ref|YP_504502.1| - 9.1e-12 45.8 0.2 2.1e-11 44.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|88604324|ref|YP_504502.1| - 1.4e-05 25.3 0.0 3.2e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Glyco_tran_28_C PF04101.16 gi|88604324|ref|YP_504502.1| - 0.0001 22.3 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain FR47 PF08445.10 gi|88604324|ref|YP_504502.1| - 0.0005 20.0 0.0 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|88604324|ref|YP_504502.1| - 0.0021 18.4 0.0 0.0046 17.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|88604324|ref|YP_504502.1| - 0.0082 16.1 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Glyco_trans_1_4 PF13692.6 gi|88604324|ref|YP_504502.1| - 0.013 15.9 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|88604324|ref|YP_504502.1| - 0.045 12.6 0.0 0.065 12.1 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Acetyltransf_CG PF14542.6 gi|88604324|ref|YP_504502.1| - 0.082 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF354 PF04007.12 gi|88604324|ref|YP_504502.1| - 0.17 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Formyl_trans_N PF00551.19 gi|88604325|ref|YP_504503.1| - 9.4e-07 28.7 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase NeuB PF03102.14 gi|88604326|ref|YP_504504.1| - 6.5e-92 307.3 0.0 7.7e-92 307.1 0.0 1.0 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|88604326|ref|YP_504504.1| - 1.2e-09 38.7 0.0 2.4e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 SAF domain AAA_33 PF13671.6 gi|88604326|ref|YP_504504.1| - 0.14 12.3 0.1 0.38 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain HMGL-like PF00682.19 gi|88604326|ref|YP_504504.1| - 0.44 10.1 2.6 67 2.9 0.0 3.1 3 0 0 3 3 3 0 HMGL-like GDP_Man_Dehyd PF16363.5 gi|88604328|ref|YP_504506.1| - 1.3e-86 291.0 0.0 1.5e-86 290.8 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|88604328|ref|YP_504506.1| - 5.2e-64 216.0 0.0 6.1e-64 215.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|88604328|ref|YP_504506.1| - 9.2e-16 57.8 0.0 6.6e-15 55.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|88604328|ref|YP_504506.1| - 3.6e-14 52.4 0.0 4.9e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|88604328|ref|YP_504506.1| - 5.1e-14 52.1 0.0 4.7e-12 45.6 0.0 2.6 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|88604328|ref|YP_504506.1| - 1.4e-13 50.6 0.0 1.8e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|88604328|ref|YP_504506.1| - 0.014 14.9 0.0 2.8 7.4 0.0 2.6 3 0 0 3 3 3 0 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|88604328|ref|YP_504506.1| - 0.025 14.5 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding HicB_lk_antitox PF15919.5 gi|88604329|ref|YP_504507.1| - 2.4e-09 37.4 0.0 2.4e-09 37.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|88604330|ref|YP_504508.1| - 1.6e-14 53.7 0.4 2.2e-14 53.2 0.4 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, UPF0102 PF02021.17 gi|88604331|ref|YP_504509.1| - 0.0013 18.9 0.1 0.0025 18.0 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Hjc PF01870.18 gi|88604331|ref|YP_504509.1| - 0.0026 17.7 0.2 0.0084 16.1 0.1 2.0 1 1 1 2 2 2 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|88604331|ref|YP_504509.1| - 0.0073 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 REase_AHJR-like Glyco_transf_28 PF03033.20 gi|88604331|ref|YP_504509.1| - 0.019 15.0 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF3782 PF12644.7 gi|88604331|ref|YP_504509.1| - 0.28 11.4 2.3 0.64 10.2 1.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) DDE_Tnp_IS1 PF03400.13 gi|88604332|ref|YP_504510.1| - 2.4e-05 24.7 0.3 0.0053 17.1 0.2 2.2 1 1 0 2 2 2 2 IS1 transposase DDE_Tnp_IS240 PF13610.6 gi|88604332|ref|YP_504510.1| - 0.074 13.3 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 DDE domain Adeno_E3A PF05248.12 gi|88604332|ref|YP_504510.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3A Zn_Tnp_IS1 PF03811.13 gi|88604333|ref|YP_504511.1| - 0.01 15.5 1.6 0.024 14.4 1.6 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|88604333|ref|YP_504511.1| - 0.011 16.0 1.2 0.023 14.9 1.2 1.6 1 0 0 1 1 1 0 zinc-ribbon DUF4934 PF16288.5 gi|88604333|ref|YP_504511.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) PyrI_C PF02748.15 gi|88604333|ref|YP_504511.1| - 1 9.3 6.0 3.5 7.6 6.0 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Methyltransf_11 PF08241.12 gi|88604334|ref|YP_504512.1| - 5.2e-18 65.5 0.0 7.7e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88604334|ref|YP_504512.1| - 9e-14 52.0 0.0 1.4e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88604334|ref|YP_504512.1| - 2.3e-13 50.3 0.0 3.3e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604334|ref|YP_504512.1| - 5.4e-12 46.3 0.0 8e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604334|ref|YP_504512.1| - 1.5e-08 34.6 0.0 2.1e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|88604334|ref|YP_504512.1| - 0.00064 19.4 0.0 0.00089 18.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|88604334|ref|YP_504512.1| - 0.0016 17.8 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|88604334|ref|YP_504512.1| - 0.033 13.5 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family zf-ribbon_3 PF13248.6 gi|88604334|ref|YP_504512.1| - 0.77 9.3 5.8 6.3 6.3 6.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain NTP_transferase PF00483.23 gi|88604335|ref|YP_504513.1| - 8e-51 173.0 0.0 9e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|88604335|ref|YP_504513.1| - 3.5e-12 47.0 0.0 4e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|88604335|ref|YP_504513.1| - 0.0015 18.3 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4948 PF16306.5 gi|88604335|ref|YP_504513.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4948) DegT_DnrJ_EryC1 PF01041.17 gi|88604336|ref|YP_504514.1| - 1.4e-101 340.4 0.0 1.8e-101 340.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|88604336|ref|YP_504514.1| - 3e-10 39.6 0.0 5.8e-10 38.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|88604336|ref|YP_504514.1| - 4.4e-09 36.0 0.1 9.2e-09 34.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|88604336|ref|YP_504514.1| - 7.4e-06 25.4 0.0 1.6e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|88604336|ref|YP_504514.1| - 0.00013 20.6 0.0 0.00019 20.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|88604336|ref|YP_504514.1| - 0.00099 17.9 0.0 0.002 17.0 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain ACPS PF01648.20 gi|88604337|ref|YP_504515.1| - 6.4e-16 58.5 0.0 7.3e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily YfmQ PF10787.9 gi|88604337|ref|YP_504515.1| - 0.1 12.4 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group PP-binding PF00550.25 gi|88604338|ref|YP_504516.1| - 8.5e-09 35.6 0.2 1.4e-08 34.9 0.2 1.4 1 1 0 1 1 1 1 Phosphopantetheine attachment site AMP-binding PF00501.28 gi|88604339|ref|YP_504517.1| - 7.3e-65 219.2 0.1 8.5e-65 219.0 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88604339|ref|YP_504517.1| - 1.1e-13 52.0 0.0 2.5e-13 50.8 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SBBP PF06739.11 gi|88604339|ref|YP_504517.1| - 0.0039 17.2 0.8 0.016 15.2 0.1 2.3 2 0 0 2 2 2 1 Beta-propeller repeat LuxE PF04443.12 gi|88604340|ref|YP_504518.1| - 6.7e-56 189.9 0.3 8.6e-56 189.6 0.3 1.0 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE AMP-binding PF00501.28 gi|88604340|ref|YP_504518.1| - 0.0015 17.2 0.0 0.011 14.3 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme AD PF09793.9 gi|88604340|ref|YP_504518.1| - 0.047 13.8 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 Anticodon-binding domain LuxC PF05893.14 gi|88604341|ref|YP_504519.1| - 2.5e-87 293.6 0.0 3e-87 293.3 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) adh_short PF00106.25 gi|88604342|ref|YP_504520.1| - 9.7e-50 168.7 2.5 1.2e-49 168.5 2.5 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|88604342|ref|YP_504520.1| - 3.4e-42 144.6 0.7 3.9e-42 144.4 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|88604342|ref|YP_504520.1| - 1.5e-16 60.8 0.7 2e-16 60.4 0.7 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|88604342|ref|YP_504520.1| - 0.011 15.3 0.3 0.02 14.3 0.3 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pox_vIL-18BP PF05566.12 gi|88604342|ref|YP_504520.1| - 0.076 13.2 0.2 0.12 12.6 0.2 1.3 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein BRCT_2 PF16589.5 gi|88604342|ref|YP_504520.1| - 0.087 13.2 0.9 4.4 7.8 0.1 2.6 2 1 0 2 2 2 0 BRCT domain, a BRCA1 C-terminus domain Phage_head_fibr PF11133.8 gi|88604342|ref|YP_504520.1| - 0.095 12.1 1.3 0.17 11.3 1.3 1.5 1 1 0 1 1 1 0 Head fiber protein DUF3201 PF11447.8 gi|88604342|ref|YP_504520.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) DUF772 PF05598.11 gi|88604343|ref|YP_504521.1| - 1.8e-14 53.5 0.1 1.3e-13 50.7 0.0 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|88604343|ref|YP_504521.1| - 6.5e-11 42.5 0.0 6.5e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88604343|ref|YP_504521.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.6 2 1 1 3 3 3 0 Transposase DDE domain RNA_pol_Rpc4 PF05132.14 gi|88604343|ref|YP_504521.1| - 0.19 12.1 3.7 0.31 11.5 3.7 1.3 1 0 0 1 1 1 0 RNA polymerase III RPC4 Sec62 PF03839.16 gi|88604343|ref|YP_504521.1| - 2.1 7.8 4.1 3.4 7.1 4.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 DUF4277 PF14104.6 gi|88604344|ref|YP_504522.1| - 4.7e-40 136.3 0.0 1e-39 135.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.21 gi|88604344|ref|YP_504522.1| - 1.7e-11 44.2 0.0 1.3e-10 41.3 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|88604344|ref|YP_504522.1| - 0.093 12.4 0.1 1.9 8.1 0.0 2.4 2 0 0 2 2 2 0 DDE superfamily endonuclease Methyltransf_23 PF13489.6 gi|88604345|ref|YP_504523.1| - 1e-14 54.7 0.0 1.3e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604345|ref|YP_504523.1| - 7.2e-08 33.1 0.0 1.3e-07 32.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604345|ref|YP_504523.1| - 3.3e-06 27.6 0.0 5.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88604345|ref|YP_504523.1| - 1.1e-05 26.0 0.0 1.8e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604345|ref|YP_504523.1| - 0.00024 20.9 0.0 0.00075 19.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.12 gi|88604345|ref|YP_504523.1| - 0.00029 20.4 0.0 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 gi|88604345|ref|YP_504523.1| - 0.016 14.8 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) DREV PF05219.12 gi|88604345|ref|YP_504523.1| - 0.044 12.9 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Hexapep PF00132.24 gi|88604346|ref|YP_504524.1| - 8.7e-12 44.3 9.3 5.7e-07 29.0 0.5 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|88604346|ref|YP_504524.1| - 8.7e-07 28.6 6.2 3.9e-05 23.3 0.3 2.7 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase PglD_N PF17836.1 gi|88604346|ref|YP_504524.1| - 2.3e-06 28.2 0.0 8.6e-06 26.3 0.0 2.0 1 1 1 2 2 2 1 PglD N-terminal domain VirArc_Nuclease PF12187.8 gi|88604346|ref|YP_504524.1| - 0.042 13.4 0.6 0.87 9.1 0.2 2.2 2 0 0 2 2 2 0 Viral/Archaeal nuclease WbqC PF08889.11 gi|88604347|ref|YP_504525.1| - 9.8e-77 257.7 1.8 1.1e-76 257.6 1.8 1.0 1 0 0 1 1 1 1 WbqC-like protein family Hjc PF01870.18 gi|88604347|ref|YP_504525.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Glycos_transf_2 PF00535.26 gi|88604348|ref|YP_504526.1| - 1.1e-32 113.2 0.6 1.5e-32 112.7 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|88604348|ref|YP_504526.1| - 2.3e-09 37.1 0.1 4e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|88604348|ref|YP_504526.1| - 2.5e-07 30.8 0.0 5.5e-07 29.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 VCBS PF13517.6 gi|88604349|ref|YP_504527.1| - 2.5e-06 28.0 40.6 1.7e-05 25.3 10.0 4.6 1 1 4 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Bact_transglu_N PF08379.10 gi|88604349|ref|YP_504527.1| - 0.02 15.8 1.2 1.1e+02 3.8 0.0 4.6 5 0 0 5 5 5 0 Bacterial transglutaminase-like N-terminal region FG-GAP PF01839.23 gi|88604349|ref|YP_504527.1| - 0.32 11.2 14.7 10 6.4 0.0 5.0 4 0 0 4 4 4 0 FG-GAP repeat Leader_Trp PF08255.11 gi|88604349|ref|YP_504527.1| - 0.9 9.7 3.3 3.9 7.7 0.0 3.0 3 0 0 3 3 3 0 Trp-operon Leader Peptide DDE_5 PF13546.6 gi|88604350|ref|YP_504528.1| - 1.6e-15 57.2 0.0 5e-15 55.6 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|88604350|ref|YP_504528.1| - 2.8e-12 46.7 0.8 4.5e-12 46.1 0.8 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|88604350|ref|YP_504528.1| - 3.5e-05 23.2 0.0 5.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 RVT_1 PF00078.27 gi|88604351|ref|YP_504529.1| - 1.3e-41 142.5 0.0 2.3e-41 141.7 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.6 gi|88604351|ref|YP_504529.1| - 1.2e-29 102.4 1.2 2.7e-29 101.3 1.2 1.6 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.11 gi|88604351|ref|YP_504529.1| - 3.9e-24 84.5 9.5 1.1e-23 83.1 9.5 1.8 1 0 0 1 1 1 1 Group II intron, maturase-specific domain DDE_Tnp_1_6 PF13751.6 gi|88604352|ref|YP_504530.1| - 3.1e-14 53.3 0.5 3.1e-14 53.3 0.5 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|88604352|ref|YP_504530.1| - 3.9e-12 46.3 0.0 1.1e-11 44.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|88604352|ref|YP_504530.1| - 6.8e-12 45.2 0.0 1.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|88604352|ref|YP_504530.1| - 0.015 15.3 0.0 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DUF2341 PF10102.9 gi|88604353|ref|YP_504531.1| - 4.9e-57 190.5 16.7 3.9e-21 75.4 0.1 4.8 5 0 0 5 5 5 3 Domain of unknown function (DUF2341) PKD PF00801.20 gi|88604353|ref|YP_504531.1| - 5.6e-20 71.0 33.4 8.3e-11 41.6 2.9 7.0 5 3 3 8 8 8 2 PKD domain Phage_BR0599 PF09356.10 gi|88604353|ref|YP_504531.1| - 3e-05 24.3 0.0 6.2 7.2 0.0 3.6 3 0 0 3 3 3 3 Phage conserved hypothetical protein BR0599 DUF4183 PF13799.6 gi|88604353|ref|YP_504531.1| - 0.03 14.1 4.9 25 4.8 0.1 4.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4183) DUF5348 PF17295.2 gi|88604353|ref|YP_504531.1| - 6.6 6.7 9.4 25 4.9 0.3 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5348) Hjc PF01870.18 gi|88604354|ref|YP_504532.1| - 0.00011 22.1 0.1 0.00041 20.3 0.0 2.0 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|88604354|ref|YP_504532.1| - 0.00043 20.5 0.1 0.00088 19.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AHJR-like PF18743.1 gi|88604354|ref|YP_504532.1| - 0.002 17.7 0.0 0.0038 16.8 0.0 1.6 1 0 0 1 1 1 1 REase_AHJR-like PDDEXK_10 PF07788.11 gi|88604354|ref|YP_504532.1| - 0.015 15.2 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily NERD PF08378.11 gi|88604354|ref|YP_504532.1| - 0.024 15.1 2.1 0.093 13.2 0.5 2.2 1 1 1 2 2 2 0 Nuclease-related domain Glyco_transf_28 PF03033.20 gi|88604354|ref|YP_504532.1| - 0.038 14.0 0.5 0.17 11.9 0.0 2.0 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Prominin PF05478.11 gi|88604354|ref|YP_504532.1| - 0.053 11.5 0.5 0.068 11.1 0.5 1.1 1 0 0 1 1 1 0 Prominin DUF3782 PF12644.7 gi|88604354|ref|YP_504532.1| - 0.058 13.6 2.2 0.23 11.6 2.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Hjc PF01870.18 gi|88604355|ref|YP_504533.1| - 0.00012 22.0 0.1 0.00044 20.2 0.0 2.0 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|88604355|ref|YP_504533.1| - 0.00043 20.4 0.1 0.00093 19.4 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AHJR-like PF18743.1 gi|88604355|ref|YP_504533.1| - 0.0021 17.6 0.0 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 REase_AHJR-like PDDEXK_10 PF07788.11 gi|88604355|ref|YP_504533.1| - 0.016 15.2 0.0 0.037 13.9 0.0 1.7 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily NERD PF08378.11 gi|88604355|ref|YP_504533.1| - 0.024 15.1 2.0 0.084 13.3 0.4 2.2 1 1 1 2 2 2 0 Nuclease-related domain Glyco_transf_28 PF03033.20 gi|88604355|ref|YP_504533.1| - 0.034 14.2 0.5 0.19 11.8 0.0 2.1 2 1 1 3 3 3 0 Glycosyltransferase family 28 N-terminal domain DUF3782 PF12644.7 gi|88604355|ref|YP_504533.1| - 0.08 13.1 5.0 0.085 13.0 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3782) Prominin PF05478.11 gi|88604355|ref|YP_504533.1| - 0.087 10.8 0.6 0.11 10.4 0.6 1.1 1 0 0 1 1 1 0 Prominin V-SNARE_C PF12352.8 gi|88604355|ref|YP_504533.1| - 0.13 12.5 0.2 13 6.1 0.0 2.6 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus Sec20 PF03908.13 gi|88604355|ref|YP_504533.1| - 0.56 10.1 2.9 0.74 9.8 1.5 2.0 1 1 1 2 2 2 0 Sec20 DUF3552 PF12072.8 gi|88604355|ref|YP_504533.1| - 4.8 6.5 8.8 7.5 5.9 8.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Hjc PF01870.18 gi|88604356|ref|YP_504534.1| - 0.00011 22.1 0.1 0.0004 20.3 0.0 1.9 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|88604356|ref|YP_504534.1| - 0.00042 20.5 0.1 0.00085 19.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AHJR-like PF18743.1 gi|88604356|ref|YP_504534.1| - 0.0019 17.7 0.0 0.0037 16.8 0.0 1.6 1 0 0 1 1 1 1 REase_AHJR-like PDDEXK_10 PF07788.11 gi|88604356|ref|YP_504534.1| - 0.014 15.3 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily NERD PF08378.11 gi|88604356|ref|YP_504534.1| - 0.023 15.2 2.3 0.087 13.3 0.4 2.2 1 1 1 2 2 2 0 Nuclease-related domain DUF3782 PF12644.7 gi|88604356|ref|YP_504534.1| - 0.037 14.2 3.8 0.07 13.3 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3782) Glyco_transf_28 PF03033.20 gi|88604356|ref|YP_504534.1| - 0.04 14.0 0.2 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain V-SNARE_C PF12352.8 gi|88604356|ref|YP_504534.1| - 0.13 12.6 0.2 12 6.2 0.0 2.5 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus ApoO PF09769.9 gi|88604356|ref|YP_504534.1| - 0.21 11.5 0.2 0.37 10.7 0.2 1.3 1 0 0 1 1 1 0 Apolipoprotein O Peptidase_S8 PF00082.22 gi|88604357|ref|YP_504535.1| - 1.6e-49 168.8 12.7 1.6e-49 168.8 12.7 2.1 2 1 0 2 2 2 1 Subtilase family PEGA PF08308.11 gi|88604357|ref|YP_504535.1| - 5.1e-33 112.8 8.9 5.9e-18 64.5 0.6 2.9 2 0 0 2 2 2 2 PEGA domain Peptidase_C1 PF00112.23 gi|88604357|ref|YP_504535.1| - 3.4e-12 46.9 11.4 3.4e-12 46.9 11.4 2.2 2 1 0 2 2 2 1 Papain family cysteine protease PKD PF00801.20 gi|88604357|ref|YP_504535.1| - 1e-08 34.9 4.2 1e-08 34.9 4.2 2.8 2 0 0 2 2 2 1 PKD domain CarbopepD_reg_2 PF13715.6 gi|88604357|ref|YP_504535.1| - 3.1e-06 27.1 7.1 0.011 15.7 0.3 2.9 2 0 0 2 2 2 2 CarboxypepD_reg-like domain Peptidase_C39_2 PF13529.6 gi|88604357|ref|YP_504535.1| - 0.00016 22.2 0.2 0.00016 22.2 0.2 2.9 1 1 1 2 2 2 1 Peptidase_C39 like family Peptidase_C1_2 PF03051.15 gi|88604357|ref|YP_504535.1| - 0.00073 18.4 0.5 0.023 13.5 0.1 2.1 2 0 0 2 2 2 1 Peptidase C1-like family Peptidase_C1 PF00112.23 gi|88604358|ref|YP_504536.1| - 1.2e-52 179.1 3.8 1.2e-52 179.1 3.8 2.2 3 0 0 3 3 3 1 Papain family cysteine protease Peptidase_S8 PF00082.22 gi|88604358|ref|YP_504536.1| - 6.4e-48 163.5 8.6 6.4e-48 163.5 8.6 1.8 2 0 0 2 2 2 1 Subtilase family PEGA PF08308.11 gi|88604358|ref|YP_504536.1| - 1.8e-29 101.4 12.8 3.3e-16 58.9 1.1 3.0 3 0 0 3 3 3 2 PEGA domain PKD PF00801.20 gi|88604358|ref|YP_504536.1| - 9.1e-09 35.0 0.2 9.1e-09 35.0 0.2 2.6 3 0 0 3 3 3 1 PKD domain CarboxypepD_reg PF13620.6 gi|88604358|ref|YP_504536.1| - 1.4e-05 25.3 11.7 0.00014 22.1 2.5 3.3 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|88604358|ref|YP_504536.1| - 0.0013 18.7 0.9 0.01 15.9 0.4 2.5 2 0 0 2 2 2 1 CarboxypepD_reg-like domain Peptidase_C1_2 PF03051.15 gi|88604358|ref|YP_504536.1| - 0.0064 15.3 1.0 0.43 9.3 0.2 2.2 2 0 0 2 2 2 2 Peptidase C1-like family TPR_11 PF13414.6 gi|88604359|ref|YP_504537.1| - 3.8e-12 45.7 3.1 2.3e-07 30.4 2.0 2.3 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.17 gi|88604359|ref|YP_504537.1| - 8.9e-10 37.9 5.3 6.7e-06 25.8 2.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88604359|ref|YP_504537.1| - 3.4e-09 36.1 3.4 0.0002 21.0 2.4 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604359|ref|YP_504537.1| - 1.4e-05 25.6 1.2 6.7e-05 23.5 0.7 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604359|ref|YP_504537.1| - 2.6e-05 24.6 0.3 4.3e-05 23.9 0.3 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|88604359|ref|YP_504537.1| - 8.3e-05 22.8 2.4 0.01 16.1 0.5 2.2 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604359|ref|YP_504537.1| - 9.4e-05 22.9 2.6 0.00046 20.8 0.7 2.3 2 1 0 2 2 2 1 Tetratricopeptide repeat BTAD PF03704.17 gi|88604359|ref|YP_504537.1| - 0.00053 20.4 0.1 0.00067 20.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional activator domain TPR_7 PF13176.6 gi|88604359|ref|YP_504537.1| - 0.00071 19.4 0.1 0.043 13.8 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88604359|ref|YP_504537.1| - 0.00086 19.3 0.8 1.5 9.2 0.5 2.5 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88604359|ref|YP_504537.1| - 0.0029 17.4 1.9 0.78 9.7 0.4 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604359|ref|YP_504537.1| - 0.0034 17.9 0.9 0.08 13.6 0.6 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88604359|ref|YP_504537.1| - 0.0082 15.1 0.1 0.01 14.8 0.1 1.1 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 NRBF2_MIT PF17169.4 gi|88604359|ref|YP_504537.1| - 0.013 15.7 0.6 0.49 10.6 0.1 2.2 1 1 1 2 2 2 0 MIT domain of nuclear receptor-binding factor 2 TPR_17 PF13431.6 gi|88604359|ref|YP_504537.1| - 0.021 15.2 0.7 0.28 11.7 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|88604359|ref|YP_504537.1| - 0.023 14.5 0.1 0.037 13.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) MIT PF04212.18 gi|88604359|ref|YP_504537.1| - 0.4 10.8 8.4 0.25 11.4 4.1 2.5 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain DDE_Tnp_1 PF01609.21 gi|88604360|ref|YP_504538.1| - 1.6e-10 41.0 0.1 7.6e-09 35.5 0.1 2.2 1 1 0 1 1 1 1 Transposase DDE domain DUF4277 PF14104.6 gi|88604360|ref|YP_504538.1| - 6.9e-07 29.6 0.0 1.1e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4277) DUF5590 PF17881.1 gi|88604360|ref|YP_504538.1| - 0.066 13.3 0.0 0.26 11.4 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) Acylphosphatase PF00708.18 gi|88604361|ref|YP_504539.1| - 4.3e-10 39.9 0.0 1.7e-09 37.9 0.0 2.0 2 0 0 2 2 2 1 Acylphosphatase Exonuc_VII_L PF02601.15 gi|88604361|ref|YP_504539.1| - 0.016 14.8 2.0 0.018 14.6 2.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Peptidase_C39_2 PF13529.6 gi|88604361|ref|YP_504539.1| - 0.03 14.9 0.1 5.3 7.6 0.0 2.6 1 1 2 3 3 3 0 Peptidase_C39 like family SPG4 PF17325.2 gi|88604361|ref|YP_504539.1| - 1.5 9.9 4.9 2.7 9.1 4.9 1.3 1 0 0 1 1 1 0 Stationary phase protein 4 YojJ PF10372.9 gi|88604361|ref|YP_504539.1| - 6.2 7.0 12.2 0.39 10.8 0.4 3.4 3 1 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus DUF3552 PF12072.8 gi|88604361|ref|YP_504539.1| - 7.8 5.9 16.9 42 3.5 16.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DUF5094 PF17015.5 gi|88604362|ref|YP_504540.1| - 0.02 15.0 0.1 0.04 14.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5094) HEAT_2 PF13646.6 gi|88604363|ref|YP_504541.1| - 4e-51 171.4 9.5 2.8e-18 66.1 0.0 3.2 2 1 2 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|88604363|ref|YP_504541.1| - 1.4e-27 93.4 0.3 0.00059 19.9 0.0 6.9 6 1 1 7 7 7 5 HEAT repeat HEAT_PBS PF03130.16 gi|88604363|ref|YP_504541.1| - 6.5e-23 79.0 1.9 0.00064 20.2 0.1 5.9 5 0 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|88604363|ref|YP_504541.1| - 1.5e-15 57.3 1.4 0.025 15.1 0.1 6.7 6 1 1 7 7 7 3 HEAT-like repeat Cnd1 PF12717.7 gi|88604363|ref|YP_504541.1| - 1.7e-13 50.9 0.2 0.00058 19.9 0.0 4.6 2 2 2 4 4 4 4 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|88604363|ref|YP_504541.1| - 3.1e-07 30.2 0.0 0.82 9.8 0.0 5.9 5 1 1 6 6 6 1 Armadillo/beta-catenin-like repeat Cohesin_HEAT PF12765.7 gi|88604363|ref|YP_504541.1| - 3.6e-07 30.4 6.4 0.15 12.4 0.0 4.1 4 0 0 4 4 4 3 HEAT repeat associated with sister chromatid cohesion Vac14_Fab1_bd PF12755.7 gi|88604363|ref|YP_504541.1| - 1.8e-06 28.5 0.2 12 6.6 0.0 5.0 1 1 3 5 5 5 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.20 gi|88604363|ref|YP_504541.1| - 2e-05 23.4 0.0 0.79 8.2 0.0 3.4 2 2 1 3 3 3 3 Adaptin N terminal region RTP1_C1 PF10363.9 gi|88604363|ref|YP_504541.1| - 0.0011 19.1 0.0 3.9 7.7 0.0 4.0 2 2 1 3 3 3 1 Required for nuclear transport of RNA pol II C-terminus 1 CLASP_N PF12348.8 gi|88604363|ref|YP_504541.1| - 0.033 13.8 0.8 4 6.9 0.1 3.6 2 2 2 4 4 4 0 CLASP N terminal RasGEF_N_2 PF14663.6 gi|88604363|ref|YP_504541.1| - 0.085 13.3 0.0 57 4.2 0.0 3.9 2 2 1 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Aconitase_B_N PF11791.8 gi|88604363|ref|YP_504541.1| - 0.11 12.5 0.0 4.6 7.3 0.0 2.7 2 1 1 3 3 3 0 Aconitate B N-terminal domain STT3 PF02516.14 gi|88604364|ref|YP_504542.1| - 3.7e-08 32.8 47.8 1e-07 31.3 47.8 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Arch_flagellin PF01917.16 gi|88604365|ref|YP_504543.1| - 2e-32 112.6 0.1 2.3e-32 112.5 0.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2808 PF10989.8 gi|88604365|ref|YP_504543.1| - 0.075 13.0 0.0 16 5.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2808) Arch_flagellin PF01917.16 gi|88604366|ref|YP_504544.1| - 5.6e-36 124.2 1.7 7.4e-36 123.8 1.7 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin TPR_8 PF13181.6 gi|88604367|ref|YP_504545.1| - 1.2e-26 90.6 8.1 3.5e-06 26.8 0.1 6.9 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|88604367|ref|YP_504545.1| - 1.8e-26 90.1 5.3 2.7e-06 27.1 0.0 6.7 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88604367|ref|YP_504545.1| - 2.5e-23 80.9 9.8 5.9e-08 32.2 0.1 6.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604367|ref|YP_504545.1| - 9.9e-19 66.8 7.3 3.8e-05 23.3 0.0 5.1 4 1 2 6 6 6 4 TPR repeat TPR_12 PF13424.6 gi|88604367|ref|YP_504545.1| - 6.9e-14 51.9 0.6 1.4e-05 25.3 0.0 4.4 4 2 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604367|ref|YP_504545.1| - 6.8e-12 45.2 0.0 0.069 14.0 0.0 5.5 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604367|ref|YP_504545.1| - 2.1e-11 44.2 0.0 0.0045 17.6 0.0 3.8 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604367|ref|YP_504545.1| - 1.2e-09 37.9 5.8 0.069 13.6 0.2 5.9 5 1 1 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604367|ref|YP_504545.1| - 4.1e-09 36.5 2.5 0.0026 18.0 0.2 3.7 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|88604367|ref|YP_504545.1| - 4.7e-08 33.2 7.5 0.0021 18.6 0.1 6.0 7 0 0 7 7 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604367|ref|YP_504545.1| - 1.8e-07 30.7 0.3 1 9.6 0.0 5.3 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|88604367|ref|YP_504545.1| - 3.5e-07 30.6 2.8 0.00045 20.7 0.1 3.5 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88604367|ref|YP_504545.1| - 1.2e-06 28.5 0.0 0.0026 17.9 0.0 3.5 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|88604367|ref|YP_504545.1| - 5.6e-05 22.9 2.5 1.1 9.3 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|88604367|ref|YP_504545.1| - 0.00025 20.1 0.2 0.023 13.7 0.0 2.6 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 RPN7 PF10602.9 gi|88604367|ref|YP_504545.1| - 0.00067 19.4 0.2 0.027 14.2 0.1 2.8 2 1 1 3 3 3 1 26S proteasome subunit RPN7 TPR_15 PF13429.6 gi|88604367|ref|YP_504545.1| - 0.0025 17.1 0.2 0.36 10.0 0.0 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|88604367|ref|YP_504545.1| - 0.0079 16.2 1.9 26 5.0 0.0 4.2 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|88604367|ref|YP_504545.1| - 0.017 15.1 2.2 5.5 7.1 0.1 3.4 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain Coatomer_E PF04733.14 gi|88604367|ref|YP_504545.1| - 0.051 13.0 0.3 2.1 7.7 0.0 2.1 1 1 1 2 2 2 0 Coatomer epsilon subunit Comm PF15957.5 gi|88604367|ref|YP_504545.1| - 0.059 13.7 0.2 0.39 11.1 0.1 2.4 2 1 0 2 2 2 0 Commissureless Mo-co_dimer PF03404.16 gi|88604367|ref|YP_504545.1| - 0.06 13.4 0.0 0.46 10.5 0.0 2.1 1 1 1 2 2 2 0 Mo-co oxidoreductase dimerisation domain PknG_TPR PF16918.5 gi|88604367|ref|YP_504545.1| - 0.15 10.8 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein kinase G tetratricopeptide repeat HemY_N PF07219.13 gi|88604367|ref|YP_504545.1| - 0.23 11.7 0.7 2.8 8.2 0.0 2.6 3 0 0 3 3 2 0 HemY protein N-terminus CcmB PF03379.13 gi|88604368|ref|YP_504546.1| - 0.016 14.7 0.2 0.016 14.7 0.2 2.0 2 0 0 2 2 2 0 CcmB protein Chordopox_A13L PF05961.11 gi|88604368|ref|YP_504546.1| - 0.017 15.4 0.1 0.017 15.4 0.1 3.2 4 0 0 4 4 4 0 Chordopoxvirus A13L protein VIT1 PF01988.19 gi|88604368|ref|YP_504546.1| - 0.031 14.1 4.4 0.11 12.4 4.2 2.0 1 1 0 1 1 1 0 VIT family Methyltransf_11 PF08241.12 gi|88604369|ref|YP_504547.1| - 2.3e-13 50.6 0.0 1.5e-12 48.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|88604369|ref|YP_504547.1| - 3.2e-12 46.6 0.0 4.2e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604369|ref|YP_504547.1| - 2.1e-09 37.3 0.0 0.00021 21.1 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|88604369|ref|YP_504547.1| - 5.5e-08 33.4 0.0 2.2e-05 25.1 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|88604369|ref|YP_504547.1| - 5.2e-06 26.5 0.0 7.5e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|88604369|ref|YP_504547.1| - 3.4e-05 23.5 0.0 0.00044 19.9 0.0 2.0 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|88604369|ref|YP_504547.1| - 6.1e-05 23.7 0.0 0.0039 17.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|88604369|ref|YP_504547.1| - 0.063 12.6 0.0 0.72 9.1 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|88604369|ref|YP_504547.1| - 0.083 11.8 0.0 0.88 8.4 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_23 PF13489.6 gi|88604370|ref|YP_504548.1| - 0.00095 19.0 0.1 0.0014 18.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|88604370|ref|YP_504548.1| - 0.0019 18.8 0.0 0.0032 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604370|ref|YP_504548.1| - 0.008 16.0 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|88604370|ref|YP_504548.1| - 0.023 15.4 0.0 0.041 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NYD-SP12_N PF15015.6 gi|88604370|ref|YP_504548.1| - 0.088 11.2 0.2 0.12 10.7 0.2 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Glycos_transf_1 PF00534.20 gi|88604371|ref|YP_504549.1| - 3.3e-39 134.2 0.1 5.6e-39 133.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|88604371|ref|YP_504549.1| - 3.1e-30 105.3 0.1 4.8e-30 104.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|88604371|ref|YP_504549.1| - 4e-11 43.2 0.1 2.1e-10 40.9 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|88604371|ref|YP_504549.1| - 2.4e-10 40.6 3.7 2.2e-09 37.5 2.2 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|88604371|ref|YP_504549.1| - 4e-07 30.3 0.0 8.1e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|88604371|ref|YP_504549.1| - 0.00047 20.6 0.0 0.00089 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Polysacc_synt PF01943.17 gi|88604372|ref|YP_504550.1| - 5.6e-23 81.7 32.6 5.6e-23 81.7 32.6 3.0 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|88604372|ref|YP_504550.1| - 2.2e-05 23.8 21.7 2.2e-05 23.8 21.7 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|88604372|ref|YP_504550.1| - 0.0022 18.0 22.0 0.0022 18.0 22.0 4.8 1 1 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain STT3 PF02516.14 gi|88604373|ref|YP_504551.1| - 6.8e-26 91.2 32.7 1.1e-25 90.5 32.7 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|88604373|ref|YP_504551.1| - 2e-09 37.6 0.0 5.8e-09 36.1 0.1 1.7 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain DUF3754 PF12576.8 gi|88604373|ref|YP_504551.1| - 3.8 7.4 5.9 47 3.9 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) AAA-ATPase_like PF09820.9 gi|88604374|ref|YP_504552.1| - 1.2e-100 336.5 0.0 1.6e-100 336.2 0.0 1.1 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88604374|ref|YP_504552.1| - 3e-32 110.6 0.0 4.8e-32 110.0 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PAS_3 PF08447.12 gi|88604374|ref|YP_504552.1| - 0.06 13.6 0.1 0.16 12.2 0.1 1.8 1 0 0 1 1 1 0 PAS fold DUF3943 PF13084.6 gi|88604374|ref|YP_504552.1| - 0.1 12.5 0.1 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3943) Hexapep PF00132.24 gi|88604375|ref|YP_504553.1| - 8.3e-20 69.7 46.2 4.8e-08 32.4 3.9 5.2 3 2 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|88604375|ref|YP_504553.1| - 8.1e-11 41.5 14.8 0.0082 15.9 5.4 5.0 3 2 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|88604375|ref|YP_504553.1| - 0.036 13.0 3.5 1.8 7.4 0.3 2.4 1 1 1 2 2 2 0 L-fucokinase Hexapep PF00132.24 gi|88604376|ref|YP_504554.1| - 8.2e-19 66.5 21.0 1.8e-06 27.4 1.4 5.5 5 0 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|88604376|ref|YP_504554.1| - 5.6e-16 58.0 12.4 2.5e-08 33.5 0.2 5.0 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|88604376|ref|YP_504554.1| - 0.061 12.2 6.7 1 8.2 1.1 2.8 1 1 1 2 2 2 0 L-fucokinase adh_short_C2 PF13561.6 gi|88604378|ref|YP_504556.1| - 6.9e-71 238.5 0.2 9.2e-71 238.1 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|88604378|ref|YP_504556.1| - 5e-63 212.1 0.4 6e-63 211.8 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|88604378|ref|YP_504556.1| - 3.2e-20 72.8 0.3 4.6e-20 72.3 0.3 1.1 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|88604378|ref|YP_504556.1| - 3.3e-05 23.2 0.1 4e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|88604378|ref|YP_504556.1| - 0.00013 21.5 1.4 0.00029 20.4 0.4 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|88604378|ref|YP_504556.1| - 0.0081 15.6 0.1 0.018 14.5 0.0 1.5 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Str_synth PF03088.16 gi|88604378|ref|YP_504556.1| - 0.04 14.0 0.0 2.4 8.3 0.0 3.0 3 1 0 3 3 3 0 Strictosidine synthase MuF_C PF18819.1 gi|88604378|ref|YP_504556.1| - 0.48 10.4 3.0 0.43 10.6 1.5 1.7 2 0 0 2 2 2 0 Phage MuF-C-terminal domain LuxC PF05893.14 gi|88604379|ref|YP_504557.1| - 2e-72 244.5 0.0 2.4e-72 244.2 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Rop-like PF05082.13 gi|88604379|ref|YP_504557.1| - 0.031 14.1 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Rop-like LuxE PF04443.12 gi|88604380|ref|YP_504558.1| - 1.3e-55 188.9 0.0 1.6e-55 188.7 0.0 1.0 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE AMP-binding PF00501.28 gi|88604380|ref|YP_504558.1| - 0.00028 19.6 0.0 0.016 13.8 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme AMP-binding PF00501.28 gi|88604381|ref|YP_504559.1| - 1.4e-76 257.8 0.0 2e-76 257.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|88604381|ref|YP_504559.1| - 7.8e-14 52.4 0.0 1.6e-13 51.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 gi|88604382|ref|YP_504560.1| - 4e-08 33.5 0.0 5.5e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site ACPS PF01648.20 gi|88604383|ref|YP_504561.1| - 3.4e-18 65.8 0.2 5.3e-18 65.2 0.1 1.3 1 1 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily bPH_1 PF08000.11 gi|88604383|ref|YP_504561.1| - 0.019 15.0 0.3 0.046 13.8 0.3 1.7 1 1 0 1 1 1 0 Bacterial PH domain 4PPT_N PF17837.1 gi|88604383|ref|YP_504561.1| - 0.052 13.7 0.0 8.6 6.6 0.0 2.2 2 0 0 2 2 2 0 4'-phosphopantetheinyl transferase N-terminal domain DUF1949 PF09186.11 gi|88604383|ref|YP_504561.1| - 0.14 12.1 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) Glycos_transf_2 PF00535.26 gi|88604384|ref|YP_504562.1| - 6.3e-24 84.7 0.0 8.5e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|88604384|ref|YP_504562.1| - 0.0015 18.4 0.0 0.0024 17.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Acylphosphatase PF00708.18 gi|88604385|ref|YP_504563.1| - 4.5e-19 68.6 0.2 5.7e-19 68.3 0.2 1.1 1 0 0 1 1 1 1 Acylphosphatase AAA-ATPase_like PF09820.9 gi|88604386|ref|YP_504564.1| - 2.9e-80 269.7 1.5 3.7e-80 269.3 0.8 1.6 2 0 0 2 2 2 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88604386|ref|YP_504564.1| - 4e-23 81.3 0.0 1.4e-22 79.6 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Acylphosphatase PF00708.18 gi|88604387|ref|YP_504565.1| - 4.3e-20 71.9 0.2 1e-19 70.7 0.2 1.6 1 0 0 1 1 1 1 Acylphosphatase Exonuc_VII_L PF02601.15 gi|88604387|ref|YP_504565.1| - 0.016 14.8 1.4 0.018 14.6 1.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Spc7 PF08317.11 gi|88604387|ref|YP_504565.1| - 0.023 13.6 7.9 0.031 13.2 7.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein HEXIM PF15313.6 gi|88604387|ref|YP_504565.1| - 0.029 14.6 2.9 0.042 14.0 2.9 1.3 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein Serine_rich PF08824.10 gi|88604387|ref|YP_504565.1| - 0.039 13.9 6.4 0.61 10.1 3.3 2.3 1 1 1 2 2 2 0 Serine rich protein interaction domain DUF16 PF01519.16 gi|88604387|ref|YP_504565.1| - 0.12 12.9 11.8 0.16 12.5 10.1 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 FAM76 PF16046.5 gi|88604387|ref|YP_504565.1| - 0.17 11.2 4.6 0.22 10.9 4.6 1.2 1 0 0 1 1 1 0 FAM76 protein DUF3552 PF12072.8 gi|88604387|ref|YP_504565.1| - 0.27 10.6 12.4 0.082 12.3 9.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3552) UPF0515 PF15135.6 gi|88604387|ref|YP_504565.1| - 0.27 10.5 3.1 0.38 10.1 3.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Phage_Gp23 PF10669.9 gi|88604387|ref|YP_504565.1| - 0.32 11.3 9.7 2.3 8.6 2.7 2.3 1 1 1 2 2 2 0 Protein gp23 (Bacteriophage A118) DUF1664 PF07889.12 gi|88604387|ref|YP_504565.1| - 0.54 10.3 10.6 0.38 10.8 8.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DUF5320 PF17253.2 gi|88604387|ref|YP_504565.1| - 1.1 10.4 5.6 20 6.3 2.4 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5320) TMPIT PF07851.13 gi|88604387|ref|YP_504565.1| - 4.4 6.4 8.8 9.3 5.4 9.0 1.4 1 1 0 1 1 1 0 TMPIT-like protein AAA-ATPase_like PF09820.9 gi|88604388|ref|YP_504566.1| - 1.4e-98 329.7 0.0 2.1e-98 329.2 0.0 1.2 1 0 0 1 1 1 1 Predicted AAA-ATPase PDDEXK_9 PF08011.11 gi|88604388|ref|YP_504566.1| - 3.8e-32 110.3 0.0 7.6e-32 109.4 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily NERD PF08378.11 gi|88604388|ref|YP_504566.1| - 0.059 13.8 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Nuclease-related domain Response_reg PF00072.24 gi|88604389|ref|YP_504567.1| - 1.4e-19 70.3 0.0 3e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|88604389|ref|YP_504567.1| - 5.7e-06 26.5 0.0 1.2e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|88604389|ref|YP_504567.1| - 3.2e-05 24.1 0.0 6.9e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|88604389|ref|YP_504567.1| - 0.047 13.7 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 PAS fold CHASE4 PF05228.13 gi|88604390|ref|YP_504568.1| - 8.4e-29 100.5 0.2 1.5e-28 99.8 0.2 1.4 1 0 0 1 1 1 1 CHASE4 domain HATPase_c PF02518.26 gi|88604390|ref|YP_504568.1| - 4.1e-14 53.0 0.5 1.5e-13 51.2 0.2 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|88604390|ref|YP_504568.1| - 6.7e-13 48.8 0.0 4.4e-12 46.2 0.0 2.5 3 0 0 3 3 3 1 PAS domain HAMP PF00672.25 gi|88604390|ref|YP_504568.1| - 2.2e-08 34.4 0.3 5.2e-08 33.1 0.3 1.7 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 gi|88604390|ref|YP_504568.1| - 2.1e-07 31.2 0.0 4.6e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|88604390|ref|YP_504568.1| - 4.8e-07 29.8 0.0 1.7e-06 28.0 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|88604390|ref|YP_504568.1| - 0.0021 18.1 0.0 0.006 16.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.6 gi|88604390|ref|YP_504568.1| - 0.0021 17.7 0.2 0.009 15.7 0.0 2.1 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|88604390|ref|YP_504568.1| - 0.0065 16.4 0.1 0.059 13.3 0.0 2.4 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 gi|88604390|ref|YP_504568.1| - 0.0081 16.0 0.0 0.029 14.2 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|88604390|ref|YP_504568.1| - 0.062 13.6 0.0 0.44 10.9 0.0 2.5 1 1 0 1 1 1 0 PAS fold Med9 PF07544.13 gi|88604390|ref|YP_504568.1| - 0.16 12.1 0.9 0.46 10.6 0.3 2.0 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Baculo_11_kDa PF06143.11 gi|88604390|ref|YP_504568.1| - 6 6.5 9.4 2.7 7.6 0.6 2.9 3 0 0 3 3 3 0 Baculovirus 11 kDa family T2SSF PF00482.23 gi|88604391|ref|YP_504569.1| - 5.6e-13 48.9 0.2 5.6e-13 48.9 0.2 2.2 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F SRTM1 PF15872.5 gi|88604391|ref|YP_504569.1| - 0.016 15.4 0.4 0.51 10.5 0.1 2.3 2 0 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 T2SSF PF00482.23 gi|88604392|ref|YP_504570.1| - 2.2e-15 56.7 0.2 2.2e-15 56.7 0.2 3.2 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|88604392|ref|YP_504570.1| - 0.027 13.3 7.7 0.25 10.0 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PEPcase_2 PF14010.6 gi|88604392|ref|YP_504570.1| - 0.12 10.8 0.0 0.32 9.4 0.0 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxylase DUF2070 PF09843.9 gi|88604392|ref|YP_504570.1| - 5.3 5.2 18.4 0.1 10.9 4.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) T2SSE PF00437.20 gi|88604393|ref|YP_504571.1| - 4e-49 167.1 0.0 5.8e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|88604393|ref|YP_504571.1| - 0.0043 16.8 0.1 0.012 15.3 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|88604393|ref|YP_504571.1| - 0.023 15.2 0.0 0.98 9.9 0.0 2.4 2 0 0 2 2 2 0 ABC transporter EF-hand_6 PF13405.6 gi|88604393|ref|YP_504571.1| - 0.081 12.9 0.0 0.31 11.1 0.0 2.0 1 0 0 1 1 1 0 EF-hand domain AAA_23 PF13476.6 gi|88604393|ref|YP_504571.1| - 0.25 11.8 1.5 0.76 10.2 0.4 2.3 3 0 0 3 3 3 0 AAA domain ATPase PF06745.13 gi|88604394|ref|YP_504572.1| - 2.6e-10 40.0 0.1 0.0006 19.2 0.0 2.2 2 0 0 2 2 2 2 KaiC DUF2281 PF10047.9 gi|88604395|ref|YP_504573.1| - 0.021 15.5 0.0 0.054 14.2 0.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2281) Aldolase_II PF00596.21 gi|88604396|ref|YP_504574.1| - 8.8e-34 117.1 0.0 9.7e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain F420_oxidored PF03807.17 gi|88604397|ref|YP_504575.1| - 6e-16 58.8 0.0 1.2e-15 57.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|88604397|ref|YP_504575.1| - 0.002 18.6 0.0 0.0043 17.5 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|88604397|ref|YP_504575.1| - 0.056 12.8 0.2 0.14 11.5 0.1 1.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|88604397|ref|YP_504575.1| - 0.11 12.3 0.1 0.28 11.1 0.1 1.7 1 1 0 1 1 1 0 Rossmann-like domain NAD_binding_2 PF03446.15 gi|88604397|ref|YP_504575.1| - 0.16 12.1 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Thioredoxin PF00085.20 gi|88604398|ref|YP_504576.1| - 2e-23 82.3 0.0 2.1e-23 82.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|88604398|ref|YP_504576.1| - 3.4e-07 30.7 0.1 7.9e-06 26.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|88604398|ref|YP_504576.1| - 5.2e-06 26.7 0.0 4.5e-05 23.7 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 gi|88604398|ref|YP_504576.1| - 0.00012 21.8 0.1 0.064 13.0 0.0 2.0 1 1 1 2 2 2 2 Redoxin Glutaredoxin PF00462.24 gi|88604398|ref|YP_504576.1| - 0.00013 22.1 0.0 0.00019 21.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin TraF PF13728.6 gi|88604398|ref|YP_504576.1| - 0.00022 21.1 0.0 0.00023 21.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|88604398|ref|YP_504576.1| - 0.00085 19.5 0.0 0.0019 18.3 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|88604398|ref|YP_504576.1| - 0.0021 18.0 0.0 0.0034 17.3 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_3 PF13192.6 gi|88604398|ref|YP_504576.1| - 0.0026 17.8 0.1 0.0031 17.5 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|88604398|ref|YP_504576.1| - 0.018 14.8 0.0 0.18 11.6 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF836 PF05768.14 gi|88604398|ref|YP_504576.1| - 0.021 15.2 0.0 0.024 15.0 0.0 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.6 gi|88604398|ref|YP_504576.1| - 0.032 14.0 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|88604398|ref|YP_504576.1| - 0.17 12.0 0.3 0.35 11.0 0.1 1.5 1 1 1 2 2 2 0 Thioredoxin SecD_SecF PF02355.16 gi|88604399|ref|YP_504577.1| - 9.7e-15 54.4 7.2 1.9e-14 53.5 7.2 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|88604399|ref|YP_504577.1| - 0.15 11.0 18.3 0.55 9.1 15.1 2.3 2 1 0 2 2 2 0 MMPL family GHMP_kinases_C PF08544.13 gi|88604399|ref|YP_504577.1| - 0.36 11.2 1.2 1.2 9.6 0.1 2.4 3 0 0 3 3 3 0 GHMP kinases C terminal SecD_SecF PF02355.16 gi|88604400|ref|YP_504578.1| - 1.4e-32 112.6 13.6 2e-32 112.1 13.6 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|88604400|ref|YP_504578.1| - 0.014 14.8 0.1 0.038 13.5 0.1 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif SLATT_5 PF18160.1 gi|88604400|ref|YP_504578.1| - 0.17 11.2 1.8 0.44 9.9 1.8 1.7 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 Patched PF02460.18 gi|88604400|ref|YP_504578.1| - 7.2 4.5 11.2 9.9 4.1 11.2 1.2 1 0 0 1 1 1 0 Patched family DUF2551 PF10826.8 gi|88604401|ref|YP_504579.1| - 8.6e-27 93.2 0.0 1e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) zf_C2H2_13 PF18508.1 gi|88604402|ref|YP_504580.1| - 0.054 13.1 0.6 0.072 12.7 0.0 1.5 2 0 0 2 2 2 0 Zinc finger domain Archease PF01951.16 gi|88604403|ref|YP_504581.1| - 9.7e-32 110.1 0.0 1.1e-31 109.9 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|88604404|ref|YP_504582.1| - 8.9e-162 539.0 0.1 1e-161 538.8 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB BPL_N PF09825.9 gi|88604405|ref|YP_504583.1| - 0.00038 19.6 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 Biotin-protein ligase, N terminal S4 PF01479.25 gi|88604405|ref|YP_504583.1| - 0.27 11.0 1.4 2.7 7.8 0.0 2.7 3 0 0 3 3 3 0 S4 domain DUF2111 PF09884.9 gi|88604406|ref|YP_504584.1| - 1.7e-36 124.2 1.1 2.3e-36 123.7 1.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) BPL_LplA_LipB PF03099.19 gi|88604407|ref|YP_504585.1| - 3e-15 56.3 0.0 9.2e-15 54.7 0.0 1.8 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|88604407|ref|YP_504585.1| - 1.8e-12 47.0 0.0 5.9e-12 45.3 0.0 2.0 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|88604407|ref|YP_504585.1| - 2.2e-09 37.1 0.5 7.7e-09 35.3 0.3 2.1 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|88604407|ref|YP_504585.1| - 1.5e-07 30.9 0.2 6.1e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|88604407|ref|YP_504585.1| - 3.3e-06 26.8 0.0 6.3e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|88604407|ref|YP_504585.1| - 5e-05 23.1 0.0 0.00013 21.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|88604407|ref|YP_504585.1| - 6.5e-05 23.0 0.1 0.0002 21.5 0.0 1.9 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|88604407|ref|YP_504585.1| - 9.8e-05 22.6 0.1 0.00039 20.7 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_20 PF12840.7 gi|88604407|ref|YP_504585.1| - 0.00024 21.1 0.0 0.00058 19.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|88604407|ref|YP_504585.1| - 0.0003 20.7 0.0 0.0097 15.8 0.0 2.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|88604407|ref|YP_504585.1| - 0.00036 20.4 0.0 0.0013 18.6 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|88604407|ref|YP_504585.1| - 0.0016 18.4 0.0 0.0036 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|88604407|ref|YP_504585.1| - 0.003 17.5 0.1 2.3 8.2 0.0 3.4 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain BPL_LplA_LipB_2 PF16917.5 gi|88604407|ref|YP_504585.1| - 0.0041 16.7 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_AsnC-type PF13404.6 gi|88604407|ref|YP_504585.1| - 0.013 15.3 0.1 0.06 13.2 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|88604407|ref|YP_504585.1| - 0.016 15.0 0.1 0.092 12.6 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain HTH_1 PF00126.27 gi|88604407|ref|YP_504585.1| - 0.019 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_X PF05155.15 gi|88604407|ref|YP_504585.1| - 0.03 14.7 0.1 0.34 11.4 0.0 2.3 2 0 0 2 2 2 0 Phage X family FaeA PF04703.12 gi|88604407|ref|YP_504585.1| - 0.042 14.2 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein SMC_ScpB PF04079.16 gi|88604407|ref|YP_504585.1| - 0.048 13.3 0.2 2.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_17 PF12728.7 gi|88604407|ref|YP_504585.1| - 0.05 13.8 1.0 16 5.8 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|88604407|ref|YP_504585.1| - 0.073 13.3 0.5 0.27 11.5 0.0 2.2 2 1 0 2 2 1 0 Winged helix DNA-binding domain TBPIP PF07106.13 gi|88604407|ref|YP_504585.1| - 0.078 12.9 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_40 PF14493.6 gi|88604407|ref|YP_504585.1| - 0.083 13.4 0.1 0.37 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|88604407|ref|YP_504585.1| - 0.094 12.7 0.2 0.48 10.4 0.1 2.3 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_39 PF14090.6 gi|88604407|ref|YP_504585.1| - 0.11 12.3 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|88604407|ref|YP_504585.1| - 0.15 12.0 0.1 0.44 10.5 0.0 1.9 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB UPF0122 PF04297.14 gi|88604407|ref|YP_504585.1| - 0.15 12.3 0.2 0.84 9.9 0.0 2.1 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like BioY PF02632.14 gi|88604408|ref|YP_504586.1| - 3.9e-40 137.0 18.4 3.9e-40 137.0 18.4 1.3 2 0 0 2 2 2 1 BioY family DUF5392 PF17370.2 gi|88604408|ref|YP_504586.1| - 0.54 10.4 5.2 0.1 12.7 1.7 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5392) ThrE PF06738.12 gi|88604408|ref|YP_504586.1| - 1.3 8.3 9.7 0.24 10.7 6.1 1.6 1 1 0 1 1 1 0 Putative threonine/serine exporter ABC_tran PF00005.27 gi|88604409|ref|YP_504587.1| - 4.2e-18 66.2 0.0 6.6e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88604409|ref|YP_504587.1| - 3.9e-10 40.0 3.9 0.00012 22.1 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604409|ref|YP_504587.1| - 1.3e-09 37.8 0.1 3.7e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|88604409|ref|YP_504587.1| - 0.00013 22.5 0.2 0.00019 22.0 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|88604409|ref|YP_504587.1| - 0.00094 19.5 0.5 0.0096 16.2 0.2 2.3 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|88604409|ref|YP_504587.1| - 0.0084 15.8 0.0 0.04 13.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|88604409|ref|YP_504587.1| - 0.0089 16.4 0.0 0.014 15.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|88604409|ref|YP_504587.1| - 0.014 15.1 0.0 0.044 13.4 0.0 1.8 2 1 1 3 3 3 0 Thymidylate kinase SbcCD_C PF13558.6 gi|88604409|ref|YP_504587.1| - 0.017 15.3 0.1 0.12 12.7 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|88604409|ref|YP_504587.1| - 0.02 15.3 0.2 0.34 11.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|88604409|ref|YP_504587.1| - 0.03 14.1 0.1 0.053 13.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|88604409|ref|YP_504587.1| - 0.04 13.8 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase Zeta_toxin PF06414.12 gi|88604409|ref|YP_504587.1| - 0.046 13.0 0.1 0.083 12.2 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|88604409|ref|YP_504587.1| - 0.06 13.9 0.0 0.2 12.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|88604409|ref|YP_504587.1| - 0.074 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|88604409|ref|YP_504587.1| - 0.08 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|88604409|ref|YP_504587.1| - 0.14 12.0 0.1 1.1 9.1 0.1 2.0 2 0 0 2 2 2 0 NTPase Rad17 PF03215.15 gi|88604409|ref|YP_504587.1| - 0.15 12.0 0.3 0.24 11.3 0.3 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|88604409|ref|YP_504587.1| - 0.18 11.2 0.1 0.3 10.4 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|88604409|ref|YP_504587.1| - 0.21 11.5 0.4 0.66 9.9 0.2 1.8 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.6 gi|88604409|ref|YP_504587.1| - 0.24 11.1 0.0 0.54 9.9 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|88604410|ref|YP_504588.1| - 1.1e-13 51.8 0.2 3.1e-13 50.4 0.2 1.6 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|88604410|ref|YP_504588.1| - 1.5e-06 28.6 0.0 2.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|88604410|ref|YP_504588.1| - 9.3e-05 22.4 2.4 0.19 11.5 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604410|ref|YP_504588.1| - 0.00063 19.3 0.0 0.082 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|88604410|ref|YP_504588.1| - 0.012 15.4 0.2 0.024 14.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain His_Phos_1 PF00300.22 gi|88604410|ref|YP_504588.1| - 0.026 14.2 0.1 0.044 13.5 0.1 1.4 1 1 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) AAA_23 PF13476.6 gi|88604410|ref|YP_504588.1| - 0.035 14.6 0.3 0.051 14.1 0.3 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|88604410|ref|YP_504588.1| - 0.074 13.0 0.3 3 7.7 0.2 2.5 3 0 0 3 3 3 0 NTPase AAA_33 PF13671.6 gi|88604410|ref|YP_504588.1| - 0.09 12.9 0.2 0.23 11.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|88604410|ref|YP_504588.1| - 0.18 11.8 1.1 1.5 8.9 0.4 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|88604410|ref|YP_504588.1| - 0.24 12.0 1.5 0.57 10.7 1.5 1.9 1 1 0 1 1 1 0 AAA domain PYC_OADA PF02436.18 gi|88604412|ref|YP_504590.1| - 1.2e-56 191.6 0.4 1.6e-55 187.9 0.1 2.1 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|88604412|ref|YP_504590.1| - 5.3e-41 140.9 0.0 7.4e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|88604412|ref|YP_504590.1| - 2.9e-19 68.7 2.9 6.1e-19 67.6 2.9 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|88604412|ref|YP_504590.1| - 1e-09 38.1 1.8 0.00016 21.4 0.2 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|88604412|ref|YP_504590.1| - 0.00048 19.4 0.3 0.79 8.9 0.1 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|88604412|ref|YP_504590.1| - 0.0074 17.0 0.6 0.19 12.5 0.1 2.7 3 0 0 3 3 2 1 HlyD family secretion protein NQRA PF05896.11 gi|88604412|ref|YP_504590.1| - 0.021 14.3 0.2 0.035 13.5 0.2 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RnfC_N PF13375.6 gi|88604412|ref|YP_504590.1| - 0.026 14.5 0.3 0.2 11.7 0.1 2.5 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|88604412|ref|YP_504590.1| - 0.12 12.2 0.1 0.28 11.1 0.1 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.20 gi|88604412|ref|YP_504590.1| - 0.13 12.0 0.2 0.96 9.2 0.1 2.3 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YqfD PF06898.11 gi|88604412|ref|YP_504590.1| - 1.1 8.0 2.3 5.3 5.8 1.0 2.2 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD CPSase_L_D2 PF02786.17 gi|88604413|ref|YP_504591.1| - 8.1e-76 254.2 0.1 1.3e-75 253.6 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|88604413|ref|YP_504591.1| - 3e-46 156.5 0.0 7.9e-46 155.1 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|88604413|ref|YP_504591.1| - 1.1e-40 138.0 0.0 2.1e-40 137.2 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|88604413|ref|YP_504591.1| - 3.5e-13 49.5 0.1 9.1e-13 48.2 0.1 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|88604413|ref|YP_504591.1| - 8.5e-07 28.7 0.1 1.6e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|88604413|ref|YP_504591.1| - 5.6e-06 26.5 0.0 9.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|88604413|ref|YP_504591.1| - 5.9e-06 26.0 0.1 3.2e-05 23.6 0.1 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|88604413|ref|YP_504591.1| - 0.00062 19.6 0.0 0.0015 18.4 0.0 1.7 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.6 gi|88604413|ref|YP_504591.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon TTL PF03133.15 gi|88604413|ref|YP_504591.1| - 0.13 11.4 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family Pyridox_ox_2 PF12900.7 gi|88604414|ref|YP_504592.1| - 5.4e-10 39.4 0.0 6e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|88604414|ref|YP_504592.1| - 9.9e-08 32.1 0.0 1.3e-07 31.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|88604415|ref|YP_504593.1| - 0.00032 20.7 0.0 0.00035 20.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PAS_4 PF08448.10 gi|88604416|ref|YP_504594.1| - 5e-23 81.4 1.8 5.4e-07 29.8 0.0 6.3 7 0 0 7 7 7 4 PAS fold PAS_9 PF13426.7 gi|88604416|ref|YP_504594.1| - 1.7e-21 76.4 0.0 0.00041 20.6 0.0 6.6 6 0 0 6 6 6 5 PAS domain PAS_3 PF08447.12 gi|88604416|ref|YP_504594.1| - 1.2e-18 67.2 0.1 3.4e-13 49.7 0.2 4.0 4 0 0 4 4 4 2 PAS fold PAS PF00989.25 gi|88604416|ref|YP_504594.1| - 2.4e-17 63.0 0.0 0.00025 21.0 0.0 5.8 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|88604416|ref|YP_504594.1| - 1.6e-09 37.5 0.6 0.0098 15.9 0.0 4.7 5 1 1 6 6 6 2 PAS domain GAF_2 PF13185.6 gi|88604416|ref|YP_504594.1| - 7.3e-07 29.6 0.0 2.1e-06 28.1 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|88604416|ref|YP_504594.1| - 0.0002 21.7 0.0 0.035 14.4 0.0 2.8 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 gi|88604416|ref|YP_504594.1| - 0.0056 17.3 0.0 0.02 15.5 0.0 2.0 1 0 0 1 1 1 1 GAF domain CutA1 PF03091.15 gi|88604417|ref|YP_504595.1| - 3e-29 100.8 0.0 3.3e-29 100.6 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Phage_integrase PF00589.22 gi|88604418|ref|YP_504596.1| - 2.3e-09 37.3 0.1 3.1e-09 36.9 0.1 1.2 1 0 0 1 1 1 1 Phage integrase family Pentapeptide_4 PF13599.6 gi|88604418|ref|YP_504596.1| - 0.088 13.0 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) Met_10 PF02475.16 gi|88604419|ref|YP_504597.1| - 6.7e-42 143.5 0.0 7.9e-42 143.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|88604419|ref|YP_504597.1| - 4.8e-05 23.0 0.0 8.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|88604419|ref|YP_504597.1| - 0.0048 16.6 0.0 0.0065 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|88604419|ref|YP_504597.1| - 0.0054 15.8 0.0 0.0096 14.9 0.0 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase 3H PF02829.14 gi|88604419|ref|YP_504597.1| - 0.018 15.3 0.0 0.044 14.1 0.0 1.6 1 0 0 1 1 1 0 3H domain PriA_CRR PF18319.1 gi|88604419|ref|YP_504597.1| - 0.041 13.9 0.5 0.073 13.1 0.5 1.4 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Mustang PF15682.5 gi|88604419|ref|YP_504597.1| - 0.054 13.6 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Musculoskeletal, temporally activated-embryonic nuclear protein 1 DUF874 PF05917.11 gi|88604420|ref|YP_504598.1| - 0.026 13.6 19.0 0.59 9.1 7.6 2.2 1 1 2 3 3 3 0 Helicobacter pylori protein of unknown function (DUF874) TarH PF02203.15 gi|88604420|ref|YP_504598.1| - 0.18 11.7 9.7 7.6 6.4 0.4 3.3 1 1 2 3 3 3 0 Tar ligand binding domain homologue DUF1601 PF07671.11 gi|88604421|ref|YP_504599.1| - 0.0015 18.3 12.1 37 4.3 0.1 7.1 6 2 2 8 8 8 2 Protein of unknown function (DUF1601) Coiled PF05710.12 gi|88604421|ref|YP_504599.1| - 9.9 7.1 8.1 1.2e+02 3.6 0.3 3.1 1 1 5 6 6 6 0 Coiled coil TPR_2 PF07719.17 gi|88604422|ref|YP_504600.1| - 1.2e-67 218.7 31.0 5.3e-08 32.4 1.1 13.2 13 0 0 13 13 13 10 Tetratricopeptide repeat TPR_1 PF00515.28 gi|88604422|ref|YP_504600.1| - 6e-65 212.6 29.7 3.9e-09 35.9 1.0 12.1 13 0 0 13 13 12 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|88604422|ref|YP_504600.1| - 3.1e-51 170.8 40.8 1.3e-11 44.0 1.4 12.1 5 3 7 12 12 12 9 TPR repeat TPR_19 PF14559.6 gi|88604422|ref|YP_504600.1| - 6.5e-51 170.7 16.4 1.5e-10 41.4 0.7 8.6 5 3 4 9 9 9 9 Tetratricopeptide repeat TPR_16 PF13432.6 gi|88604422|ref|YP_504600.1| - 4.3e-50 168.1 16.3 6.2e-08 33.2 0.1 9.8 7 2 3 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|88604422|ref|YP_504600.1| - 5.2e-49 161.2 26.8 0.00017 21.7 0.0 12.8 13 0 0 13 13 12 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|88604422|ref|YP_504600.1| - 5e-48 157.3 21.1 4.8e-08 32.6 0.4 12.2 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|88604422|ref|YP_504600.1| - 2.2e-42 140.1 15.4 1.7e-06 28.4 0.0 12.0 4 3 9 13 13 13 9 Tetratricopeptide repeat TPR_9 PF13371.6 gi|88604422|ref|YP_504600.1| - 8.7e-33 112.3 4.5 2.1e-06 27.8 0.1 7.8 4 3 4 8 8 8 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|88604422|ref|YP_504600.1| - 4.3e-29 100.6 16.5 2.5e-06 27.6 0.0 7.1 5 1 3 8 8 8 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|88604422|ref|YP_504600.1| - 3.8e-26 91.2 29.1 7e-06 26.2 2.0 10.9 4 2 6 11 11 11 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|88604422|ref|YP_504600.1| - 3.9e-23 79.7 19.7 0.0017 18.2 0.1 11.7 12 0 0 12 12 12 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|88604422|ref|YP_504600.1| - 5.5e-23 80.0 22.6 8.5e-05 22.9 0.5 11.6 12 0 0 12 12 12 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|88604422|ref|YP_504600.1| - 8.8e-17 61.2 3.0 0.0033 17.7 0.1 7.8 3 2 5 8 8 8 3 Tetratricopeptide repeat BTAD PF03704.17 gi|88604422|ref|YP_504600.1| - 5.5e-15 56.1 3.7 0.0014 19.1 0.1 5.5 5 0 0 5 5 5 3 Bacterial transcriptional activator domain TPR_15 PF13429.6 gi|88604422|ref|YP_504600.1| - 9.4e-15 54.6 4.2 0.0056 15.9 0.3 6.1 4 1 3 7 7 7 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|88604422|ref|YP_504600.1| - 9.8e-14 51.1 2.4 0.026 13.4 0.1 5.9 2 1 4 6 6 6 4 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|88604422|ref|YP_504600.1| - 8e-13 48.2 20.3 0.008 16.2 1.5 8.3 7 2 2 9 9 8 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|88604422|ref|YP_504600.1| - 3e-08 33.3 24.6 0.018 14.9 1.6 7.9 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|88604422|ref|YP_504600.1| - 1.2e-07 31.6 14.8 0.16 12.6 0.1 9.2 12 0 0 12 12 8 1 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|88604422|ref|YP_504600.1| - 3.6e-07 29.3 1.9 0.017 13.9 0.8 4.0 2 1 1 4 4 4 2 Protein kinase G tetratricopeptide repeat PPTA PF01239.22 gi|88604422|ref|YP_504600.1| - 2.1e-06 27.3 7.7 1.5 8.7 0.0 7.6 8 0 0 8 8 8 1 Protein prenyltransferase alpha subunit repeat SPO22 PF08631.10 gi|88604422|ref|YP_504600.1| - 1e-05 25.2 0.1 0.009 15.5 0.0 3.2 3 0 0 3 3 3 1 Meiosis protein SPO22/ZIP4 like TPR_3 PF07720.12 gi|88604422|ref|YP_504600.1| - 3.2e-05 23.8 20.4 0.012 15.6 1.3 7.1 7 0 0 7 7 7 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|88604422|ref|YP_504600.1| - 0.00024 21.6 3.6 3.2 8.2 0.2 4.8 4 2 2 6 6 5 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|88604422|ref|YP_504600.1| - 0.00033 20.7 4.8 0.55 10.3 0.3 4.1 3 1 1 4 4 4 2 Putative TPR-like repeat ChAPs PF09295.10 gi|88604422|ref|YP_504600.1| - 0.00059 18.9 2.0 0.14 11.2 0.3 3.9 4 1 1 5 5 5 1 ChAPs (Chs5p-Arf1p-binding proteins) TOM20_plant PF06552.12 gi|88604422|ref|YP_504600.1| - 0.003 17.3 1.6 6.6 6.4 0.0 4.3 4 1 1 5 5 5 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.9 gi|88604422|ref|YP_504600.1| - 0.0041 16.9 7.9 0.22 11.2 0.0 4.6 4 1 1 5 5 4 1 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|88604422|ref|YP_504600.1| - 0.0071 16.4 4.8 4.2 7.4 0.1 4.9 2 1 2 4 4 4 1 Domain of Unknown Function (DUF3856) TPR_MalT PF17874.1 gi|88604422|ref|YP_504600.1| - 0.0097 15.3 7.0 8.6 5.6 0.1 5.0 3 3 0 4 4 4 0 MalT-like TPR region HrpB1_HrpK PF09613.10 gi|88604422|ref|YP_504600.1| - 0.04 13.6 0.0 21 4.8 0.0 3.7 2 2 2 4 4 4 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF3808 PF10300.9 gi|88604422|ref|YP_504600.1| - 0.058 12.1 3.7 0.81 8.4 0.1 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF3808) Coatomer_E PF04733.14 gi|88604422|ref|YP_504600.1| - 0.065 12.6 1.3 0.46 9.8 0.2 2.7 2 1 1 3 3 3 0 Coatomer epsilon subunit YfiO PF13525.6 gi|88604422|ref|YP_504600.1| - 0.077 12.7 15.6 0.28 10.9 1.2 4.3 1 1 1 4 4 4 0 Outer membrane lipoprotein HEAT_2 PF13646.6 gi|88604422|ref|YP_504600.1| - 0.12 12.8 0.2 1.8 9.0 0.0 3.0 4 0 0 4 4 2 0 HEAT repeats DUF5113 PF17140.4 gi|88604422|ref|YP_504600.1| - 0.13 12.0 14.4 1 9.1 0.4 5.4 3 2 3 6 6 6 0 Domain of unknown function (DUF5113) SHNi-TPR PF10516.9 gi|88604422|ref|YP_504600.1| - 0.23 10.9 3.9 35 3.9 0.1 4.6 5 0 0 5 5 5 0 SHNi-TPR Paf67 PF10255.9 gi|88604422|ref|YP_504600.1| - 0.33 9.9 8.7 9 5.2 0.1 4.2 4 1 0 4 4 4 0 RNA polymerase I-associated factor PAF67 RPN7 PF10602.9 gi|88604422|ref|YP_504600.1| - 0.48 10.1 8.4 0.72 9.5 0.3 4.6 4 3 3 7 7 6 0 26S proteasome subunit RPN7 DUF4192 PF13830.6 gi|88604422|ref|YP_504600.1| - 7.4 6.5 5.7 34 4.4 0.3 3.4 3 1 0 4 4 4 0 Domain of unknown function (DUF4192) Glyco_trans_2_3 PF13632.6 gi|88604423|ref|YP_504601.1| - 4.3e-21 75.7 4.1 4.3e-21 75.7 4.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|88604423|ref|YP_504601.1| - 4.5e-21 75.8 0.0 7.7e-20 71.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|88604423|ref|YP_504601.1| - 5.4e-11 42.6 0.0 1.4e-09 38.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|88604423|ref|YP_504601.1| - 2.2e-08 33.7 0.0 4.2e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 T2SSE_N PF05157.15 gi|88604423|ref|YP_504601.1| - 7.1e-06 26.2 0.0 1.4e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain Anp1 PF03452.14 gi|88604423|ref|YP_504601.1| - 0.023 14.1 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Anp1 TMEM208_SND2 PF05620.11 gi|88604423|ref|YP_504601.1| - 1 9.1 5.3 0.51 10.1 0.2 2.3 2 0 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 ABC2_membrane_2 PF12679.7 gi|88604423|ref|YP_504601.1| - 2.1 7.5 9.9 0.18 11.1 3.2 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF3139 PF11337.8 gi|88604423|ref|YP_504601.1| - 2.4 8.9 6.9 6.2 7.5 2.7 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Response_reg PF00072.24 gi|88604424|ref|YP_504602.1| - 4.5e-25 88.0 0.1 5.7e-25 87.7 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|88604424|ref|YP_504602.1| - 0.034 14.5 0.0 0.05 14.0 0.0 1.4 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ GerA PF03323.13 gi|88604424|ref|YP_504602.1| - 0.051 12.0 0.1 0.068 11.6 0.1 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Nucleolin_bd PF16725.5 gi|88604424|ref|YP_504602.1| - 0.079 12.6 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Nucleolin binding domain Ntox35 PF15534.6 gi|88604424|ref|YP_504602.1| - 0.17 12.4 0.0 1.8 9.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial toxin 35 HATPase_c PF02518.26 gi|88604425|ref|YP_504603.1| - 3.4e-21 75.8 0.0 6.5e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|88604425|ref|YP_504603.1| - 4.4e-06 26.6 0.5 1.9e-05 24.6 0.5 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|88604425|ref|YP_504603.1| - 6.3e-06 26.3 0.0 1.5e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_5 PF14501.6 gi|88604425|ref|YP_504603.1| - 0.00039 20.3 0.0 0.00098 19.0 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|88604425|ref|YP_504603.1| - 0.066 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DNA_topoisoIV PF00521.20 gi|88604425|ref|YP_504603.1| - 0.21 10.5 3.2 0.43 9.4 3.2 1.5 1 1 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Glyco_hydro_26 PF02156.15 gi|88604426|ref|YP_504604.1| - 3.8e-13 49.6 4.7 9.2e-13 48.3 4.6 1.6 1 1 1 2 2 2 1 Glycosyl hydrolase family 26 Cellulase PF00150.18 gi|88604426|ref|YP_504604.1| - 0.0048 16.4 3.1 0.0074 15.7 2.6 1.5 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) SMC_ScpA PF02616.14 gi|88604427|ref|YP_504605.1| - 3.8e-06 27.0 0.2 2.2e-05 24.5 0.2 1.9 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|88604427|ref|YP_504605.1| - 0.0076 15.5 0.0 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein Gln-synt_N_2 PF16952.5 gi|88604427|ref|YP_504605.1| - 0.03 14.1 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain HTH_IclR PF09339.10 gi|88604427|ref|YP_504605.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain CbiM PF01891.16 gi|88604428|ref|YP_504606.1| - 1.8e-54 184.7 17.2 2e-54 184.6 17.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|88604429|ref|YP_504607.1| - 9.8e-18 63.9 0.6 1.2e-17 63.6 0.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN YitT_membrane PF02588.15 gi|88604429|ref|YP_504607.1| - 0.021 14.2 0.2 0.026 13.9 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PsbI PF02532.14 gi|88604429|ref|YP_504607.1| - 1.5 8.8 3.6 2.8 8.0 3.6 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) CbiQ PF02361.16 gi|88604430|ref|YP_504608.1| - 1.4e-38 132.7 8.9 1.4e-38 132.7 8.9 1.4 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|88604431|ref|YP_504609.1| - 1.7e-34 119.3 0.0 3.1e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|88604431|ref|YP_504609.1| - 6.1e-16 59.1 0.4 1.6e-09 38.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|88604431|ref|YP_504609.1| - 4.4e-07 29.6 0.2 2.4e-05 23.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|88604431|ref|YP_504609.1| - 6.2e-05 22.9 0.0 0.0062 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|88604431|ref|YP_504609.1| - 0.0042 16.8 0.1 0.0092 15.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|88604431|ref|YP_504609.1| - 0.0057 17.1 0.0 0.0094 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|88604431|ref|YP_504609.1| - 0.019 14.7 0.1 4 7.1 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|88604431|ref|YP_504609.1| - 0.027 14.1 0.4 0.061 12.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|88604431|ref|YP_504609.1| - 0.032 14.0 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|88604431|ref|YP_504609.1| - 0.045 13.6 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase BCA_ABC_TP_C PF12399.8 gi|88604431|ref|YP_504609.1| - 0.055 13.4 0.3 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_13 PF13166.6 gi|88604431|ref|YP_504609.1| - 0.078 11.6 0.1 2.1 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|88604431|ref|YP_504609.1| - 0.1 11.9 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|88604431|ref|YP_504609.1| - 0.14 12.4 0.0 0.56 10.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|88604432|ref|YP_504610.1| - 1.8e-06 28.6 0.0 3.4e-06 27.7 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|88604432|ref|YP_504610.1| - 6.8e-06 26.0 0.0 7.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|88604432|ref|YP_504610.1| - 3e-05 24.0 0.1 4.1e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|88604432|ref|YP_504610.1| - 3.6e-05 23.4 0.0 4.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_4 PF02390.17 gi|88604432|ref|YP_504610.1| - 6.1e-05 22.6 0.0 9.2e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|88604432|ref|YP_504610.1| - 0.0004 19.8 0.0 0.0005 19.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|88604432|ref|YP_504610.1| - 0.00041 19.7 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|88604432|ref|YP_504610.1| - 0.0011 19.5 0.0 0.0022 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|88604432|ref|YP_504610.1| - 0.0023 17.5 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|88604432|ref|YP_504610.1| - 0.0026 17.5 0.0 0.0031 17.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|88604432|ref|YP_504610.1| - 0.0029 17.4 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|88604432|ref|YP_504610.1| - 0.0035 16.5 0.0 0.0046 16.1 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_12 PF08242.12 gi|88604432|ref|YP_504610.1| - 0.007 17.1 0.0 0.011 16.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|88604432|ref|YP_504610.1| - 0.075 12.4 0.0 0.13 11.6 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TP_methylase PF00590.20 gi|88604433|ref|YP_504611.1| - 5.5e-36 124.5 0.0 1.1e-35 123.5 0.0 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiK PF06180.11 gi|88604433|ref|YP_504611.1| - 0.061 12.6 0.0 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Cobalt chelatase (CbiK) Radical_SAM PF04055.21 gi|88604433|ref|YP_504611.1| - 0.15 12.4 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Radical SAM superfamily TP_methylase PF00590.20 gi|88604434|ref|YP_504612.1| - 3.1e-46 158.0 0.1 3.6e-46 157.8 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|88604434|ref|YP_504612.1| - 0.019 15.3 0.1 0.054 13.9 0.1 1.9 1 1 0 1 1 1 0 Radical SAM superfamily HicA_toxin PF07927.12 gi|88604434|ref|YP_504612.1| - 0.098 12.7 0.1 5.7 7.1 0.0 2.4 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, CbiG_N PF11760.8 gi|88604435|ref|YP_504613.1| - 2.1e-29 101.3 0.3 6.8e-29 99.7 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|88604435|ref|YP_504613.1| - 4.3e-27 95.0 0.0 7.2e-27 94.3 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|88604436|ref|YP_504614.1| - 1e-39 136.7 0.7 1.2e-39 136.4 0.7 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ROS_MUCR PF05443.11 gi|88604436|ref|YP_504614.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein CoA_binding_2 PF13380.6 gi|88604436|ref|YP_504614.1| - 0.15 12.6 0.0 5.5 7.5 0.0 2.6 1 1 1 2 2 2 0 CoA binding domain CbiC PF02570.15 gi|88604437|ref|YP_504615.1| - 1.2e-57 194.8 0.1 1.3e-57 194.6 0.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.17 gi|88604438|ref|YP_504616.1| - 6.3e-43 146.9 0.4 8.4e-43 146.5 0.4 1.1 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.20 gi|88604439|ref|YP_504617.1| - 5.5e-23 82.0 0.2 2.5e-22 79.9 0.2 2.0 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HhH-GPD PF00730.25 gi|88604441|ref|YP_504619.1| - 5.9e-13 49.2 0.0 9.4e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|88604441|ref|YP_504619.1| - 0.00061 19.5 0.0 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|88604441|ref|YP_504619.1| - 0.027 15.1 0.0 0.12 13.0 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain Waikav_capsid_1 PF12264.8 gi|88604441|ref|YP_504619.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Waikavirus capsid protein 1 EAP30 PF04157.16 gi|88604441|ref|YP_504619.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family Radical_SAM PF04055.21 gi|88604443|ref|YP_504621.1| - 2.7e-08 34.4 0.3 2.8e-07 31.1 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|88604443|ref|YP_504621.1| - 0.001 19.3 0.4 0.0018 18.5 0.4 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|88604443|ref|YP_504621.1| - 0.023 14.9 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain DNA_photolyase PF00875.18 gi|88604444|ref|YP_504622.1| - 4.2e-21 75.6 0.0 6.8e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase FAM86 PF14904.6 gi|88604444|ref|YP_504622.1| - 0.12 12.5 0.0 2.6 8.2 0.0 2.6 3 0 0 3 3 3 0 Family of unknown function HicB_lk_antitox PF15919.5 gi|88604445|ref|YP_504623.1| - 0.045 13.9 0.0 0.061 13.4 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2283 PF10049.9 gi|88604446|ref|YP_504624.1| - 3.1e-18 65.7 0.7 3.7e-18 65.5 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF4258 PF14076.6 gi|88604447|ref|YP_504625.1| - 7.4e-13 48.7 0.0 8.6e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) SmpA_OmlA PF04355.13 gi|88604447|ref|YP_504625.1| - 0.056 13.2 0.0 0.073 12.9 0.0 1.1 1 0 0 1 1 1 0 SmpA / OmlA family Calreticulin PF00262.18 gi|88604447|ref|YP_504625.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Calreticulin family MutL_C PF08676.11 gi|88604448|ref|YP_504626.1| - 3.5e-34 117.7 0.0 7.3e-34 116.7 0.0 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|88604448|ref|YP_504626.1| - 3.2e-28 97.8 0.0 6e-28 96.9 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|88604448|ref|YP_504626.1| - 3e-11 43.3 0.0 5.2e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|88604448|ref|YP_504626.1| - 8.9e-07 29.4 0.0 1.6e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|88604449|ref|YP_504627.1| - 5.5e-81 271.1 0.5 9.4e-81 270.3 0.5 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|88604449|ref|YP_504627.1| - 3.6e-43 146.4 0.0 7.2e-43 145.4 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|88604449|ref|YP_504627.1| - 1.4e-41 142.9 0.4 2.2e-41 142.2 0.4 1.3 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|88604449|ref|YP_504627.1| - 3.1e-30 104.4 0.3 6.3e-30 103.4 0.3 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|88604449|ref|YP_504627.1| - 1.3e-19 70.9 0.0 3e-19 69.7 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_23 PF13476.6 gi|88604449|ref|YP_504627.1| - 0.0099 16.4 0.5 2 8.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_27 PF13514.6 gi|88604449|ref|YP_504627.1| - 0.017 14.7 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|88604449|ref|YP_504627.1| - 0.053 13.6 0.0 0.17 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Semialdhyde_dh PF01118.24 gi|88604450|ref|YP_504628.1| - 4.8e-34 117.4 0.0 8.1e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|88604450|ref|YP_504628.1| - 3.7e-17 63.0 0.0 5.5e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|88604450|ref|YP_504628.1| - 0.0095 16.8 0.0 0.14 13.0 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|88604450|ref|YP_504628.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|88604450|ref|YP_504628.1| - 0.18 11.2 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family CBS PF00571.28 gi|88604451|ref|YP_504629.1| - 1.7e-31 108.5 2.8 7e-16 58.4 0.1 2.2 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.18 gi|88604452|ref|YP_504630.1| - 9.6e-129 429.4 7.4 1.1e-128 429.1 7.4 1.0 1 0 0 1 1 1 1 ArgJ family AA_kinase PF00696.28 gi|88604453|ref|YP_504631.1| - 1.3e-45 155.9 3.4 1.5e-45 155.7 3.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family DsbD PF02683.15 gi|88604454|ref|YP_504632.1| - 4.1e-07 30.1 17.5 2.8e-06 27.4 18.8 1.7 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region SfLAP PF11139.8 gi|88604454|ref|YP_504632.1| - 0.00099 18.6 16.1 0.0032 16.9 16.1 1.8 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein Glutaredoxin PF00462.24 gi|88604454|ref|YP_504632.1| - 0.0038 17.4 0.0 0.018 15.3 0.0 2.0 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_9 PF14595.6 gi|88604454|ref|YP_504632.1| - 0.0078 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DUF393 PF04134.12 gi|88604454|ref|YP_504632.1| - 0.0083 17.4 0.0 0.015 16.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF393 CM_2 PF01817.21 gi|88604455|ref|YP_504633.1| - 1.6e-14 54.0 2.3 1.9e-14 53.8 2.3 1.1 1 0 0 1 1 1 1 Chorismate mutase type II GCR1_C PF12550.8 gi|88604455|ref|YP_504633.1| - 0.044 14.1 0.2 4.9 7.5 0.1 2.1 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes SpoIIE PF07228.12 gi|88604457|ref|YP_504635.1| - 1.3e-48 165.5 0.0 2.3e-48 164.7 0.0 1.5 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HAMP PF00672.25 gi|88604457|ref|YP_504635.1| - 3e-06 27.5 0.0 1.3e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 HAMP domain FtsX PF02687.21 gi|88604457|ref|YP_504635.1| - 0.0035 17.8 4.9 1.4 9.5 0.0 2.7 2 0 0 2 2 2 2 FtsX-like permease family DUF2949 PF11165.8 gi|88604457|ref|YP_504635.1| - 0.015 15.6 0.1 0.057 13.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2949) STAS PF01740.21 gi|88604458|ref|YP_504636.1| - 1.2e-15 57.2 0.0 1.3e-14 53.8 0.0 2.1 2 0 0 2 2 2 1 STAS domain STAS_2 PF13466.6 gi|88604458|ref|YP_504636.1| - 1e-06 29.0 0.0 2.4e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 STAS domain HATPase_c_4 PF13749.6 gi|88604459|ref|YP_504637.1| - 1.2e-20 73.5 0.1 4.6e-20 71.6 0.1 2.0 2 0 0 2 2 2 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|88604459|ref|YP_504637.1| - 1.3e-19 70.7 0.0 2.9e-19 69.6 0.0 1.5 2 0 0 2 2 2 1 Putative DNA-binding domain FrhB_FdhB_C PF04432.13 gi|88604460|ref|YP_504638.1| - 1.1e-34 119.5 1.7 1.2e-34 119.4 0.1 1.8 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|88604460|ref|YP_504638.1| - 4.3e-20 71.6 0.4 9e-20 70.6 0.2 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|88604460|ref|YP_504638.1| - 7.1e-06 26.5 9.9 7.1e-06 26.5 9.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|88604460|ref|YP_504638.1| - 8.6e-06 25.8 8.8 8.6e-06 25.8 8.8 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|88604460|ref|YP_504638.1| - 0.00052 20.4 10.7 0.00052 20.4 10.7 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|88604460|ref|YP_504638.1| - 0.0015 19.1 15.2 0.0044 17.6 13.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|88604460|ref|YP_504638.1| - 0.0017 18.1 4.2 0.019 14.8 0.6 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|88604460|ref|YP_504638.1| - 0.002 17.9 21.0 0.0092 15.8 3.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|88604460|ref|YP_504638.1| - 0.005 16.9 18.0 0.06 13.5 3.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|88604460|ref|YP_504638.1| - 0.011 15.9 6.2 0.3 11.3 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|88604460|ref|YP_504638.1| - 0.016 15.3 12.6 0.28 11.3 1.3 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|88604460|ref|YP_504638.1| - 0.036 14.2 19.3 0.11 12.6 15.9 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|88604460|ref|YP_504638.1| - 0.073 13.9 10.2 1.6 9.6 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|88604460|ref|YP_504638.1| - 0.079 13.1 21.5 0.21 11.7 1.7 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|88604460|ref|YP_504638.1| - 1 10.0 22.1 0.45 11.1 3.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|88604460|ref|YP_504638.1| - 5.5 8.0 17.4 31 5.6 15.1 3.0 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|88604461|ref|YP_504639.1| - 7.1e-96 321.8 0.0 8.7e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|88604461|ref|YP_504639.1| - 3.9e-33 113.8 0.0 7.4e-33 112.9 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|88604461|ref|YP_504639.1| - 7.3e-18 64.3 0.9 7.3e-18 64.3 0.9 1.8 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain DUF4358 PF14270.6 gi|88604461|ref|YP_504639.1| - 0.0078 16.5 0.2 0.021 15.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4358) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanospirillum_hungatei_JF_1_uid58181/NC_007796.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanospirillum_hungatei_JF_1_uid58181/NC_007796.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanospirillum_hungatei_JF_1_uid58181/NC_007796.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanospirillum_hungatei_JF_1_uid58181/NC_007796.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:16:01 2019 # [ok]