# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|219850688|ref|YP_002465120.1| - 7.9e-23 80.0 0.2 2e-22 78.6 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|219850688|ref|YP_002465120.1| - 6.5e-13 49.0 0.0 6.8e-11 42.4 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|219850688|ref|YP_002465120.1| - 2.2e-12 47.2 0.0 4.7e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|219850688|ref|YP_002465120.1| - 6.1e-09 36.1 0.1 3.7e-08 33.6 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|219850688|ref|YP_002465120.1| - 1.7e-06 27.9 0.0 3.5e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|219850688|ref|YP_002465120.1| - 8.2e-05 22.3 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DEAD PF00270.24 gi|219850688|ref|YP_002465120.1| - 0.00042 19.8 1.7 0.012 15.0 0.3 2.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase KAP_NTPase PF07693.9 gi|219850688|ref|YP_002465120.1| - 0.00065 18.7 0.0 0.96 8.3 0.0 2.4 2 0 0 2 2 2 2 KAP family P-loop domain DUF815 PF05673.8 gi|219850688|ref|YP_002465120.1| - 0.0012 17.8 0.1 0.0038 16.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|219850688|ref|YP_002465120.1| - 0.0021 17.4 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|219850688|ref|YP_002465120.1| - 0.0027 16.6 0.0 0.0065 15.4 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|219850688|ref|YP_002465120.1| - 0.003 17.0 0.1 0.016 14.6 0.0 2.1 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|219850688|ref|YP_002465120.1| - 0.03 14.2 1.5 0.07 13.0 0.1 2.2 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) DUF2075 PF09848.4 gi|219850688|ref|YP_002465120.1| - 0.032 13.2 0.0 0.048 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|219850688|ref|YP_002465120.1| - 0.073 13.2 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|219850688|ref|YP_002465120.1| - 0.078 12.5 0.2 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|219850688|ref|YP_002465120.1| - 0.084 12.4 0.8 0.14 11.6 0.6 1.5 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|219850688|ref|YP_002465120.1| - 0.12 11.8 0.0 0.31 10.4 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|219850688|ref|YP_002465120.1| - 0.13 13.0 0.0 0.45 11.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AsnC_trans_reg PF01037.16 gi|219850689|ref|YP_002465121.1| - 2e-15 56.2 0.8 2.7e-15 55.8 0.1 1.6 2 0 0 2 2 2 1 AsnC family HTH_AsnC-type PF13404.1 gi|219850689|ref|YP_002465121.1| - 1.7e-10 40.2 1.9 6.3e-10 38.4 1.3 2.1 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|219850689|ref|YP_002465121.1| - 1.1e-09 37.4 0.1 2.5e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|219850689|ref|YP_002465121.1| - 0.0011 18.7 0.6 0.0019 17.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.4 gi|219850689|ref|YP_002465121.1| - 0.0076 15.6 0.4 0.029 13.7 0.0 1.9 2 0 0 2 2 2 1 DDRGK domain Rrf2 PF02082.15 gi|219850689|ref|YP_002465121.1| - 0.011 15.8 0.3 0.21 11.7 0.1 2.4 3 0 0 3 3 3 0 Transcriptional regulator MarR_2 PF12802.2 gi|219850689|ref|YP_002465121.1| - 0.011 15.4 0.3 0.024 14.2 0.2 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|219850689|ref|YP_002465121.1| - 0.014 15.2 0.3 0.054 13.2 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|219850689|ref|YP_002465121.1| - 0.014 15.4 0.3 0.032 14.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|219850689|ref|YP_002465121.1| - 0.015 14.8 0.1 0.097 12.2 0.0 2.0 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|219850689|ref|YP_002465121.1| - 0.016 14.8 0.1 0.034 13.7 0.1 1.6 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|219850689|ref|YP_002465121.1| - 0.022 14.4 0.2 0.051 13.2 0.1 1.6 2 0 0 2 2 2 0 MarR family DUF4423 PF14394.1 gi|219850689|ref|YP_002465121.1| - 0.049 13.1 0.1 0.097 12.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FliG_M PF14841.1 gi|219850689|ref|YP_002465121.1| - 0.058 13.4 2.9 5.5 7.0 0.0 2.6 3 0 0 3 3 3 0 FliG middle domain FeoC PF09012.5 gi|219850689|ref|YP_002465121.1| - 0.11 12.2 0.1 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator PspB PF06667.7 gi|219850689|ref|YP_002465121.1| - 0.56 10.1 3.6 13 5.7 0.1 2.5 2 1 0 2 2 2 0 Phage shock protein B Aminotran_1_2 PF00155.16 gi|219850690|ref|YP_002465122.1| - 1.7e-67 227.9 0.0 1.9e-67 227.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219850690|ref|YP_002465122.1| - 2.4e-10 40.0 0.1 3.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|219850690|ref|YP_002465122.1| - 1.8e-06 26.9 0.0 9.5e-06 24.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219850690|ref|YP_002465122.1| - 3.2e-06 26.5 0.0 6.1e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|219850690|ref|YP_002465122.1| - 0.00011 20.6 0.0 0.00015 20.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|219850690|ref|YP_002465122.1| - 0.00068 18.3 0.0 0.001 17.7 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain E1_dh PF00676.15 gi|219850690|ref|YP_002465122.1| - 0.0043 15.8 0.0 0.0074 15.0 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component DUF3268 PF11672.3 gi|219850690|ref|YP_002465122.1| - 0.14 12.2 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) N6_N4_Mtase PF01555.13 gi|219850691|ref|YP_002465123.1| - 4.4e-36 124.5 0.0 5.6e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|219850691|ref|YP_002465123.1| - 2.4e-15 56.5 0.0 2.1e-06 27.7 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219850691|ref|YP_002465123.1| - 7.6e-06 26.3 0.0 0.28 11.6 0.0 3.0 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219850691|ref|YP_002465123.1| - 7e-05 23.3 0.0 0.015 15.8 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219850691|ref|YP_002465123.1| - 0.0001 21.9 0.0 0.13 11.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|219850691|ref|YP_002465123.1| - 0.0066 16.0 0.0 0.085 12.4 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|219850691|ref|YP_002465123.1| - 0.012 15.1 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|219850691|ref|YP_002465123.1| - 0.092 13.2 0.0 1.6 9.2 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219850691|ref|YP_002465123.1| - 0.14 12.5 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.11 gi|219850691|ref|YP_002465123.1| - 0.18 11.3 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|219850692|ref|YP_002465124.1| - 1.6e-10 41.5 0.0 3.2e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219850692|ref|YP_002465124.1| - 1.5e-08 34.3 0.0 2.8e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219850692|ref|YP_002465124.1| - 6.8e-08 32.4 0.0 1.3e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|219850692|ref|YP_002465124.1| - 1.3e-06 27.6 0.0 2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|219850692|ref|YP_002465124.1| - 5.1e-06 25.7 0.0 6.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.1 gi|219850692|ref|YP_002465124.1| - 2e-05 24.8 0.0 5.6e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219850692|ref|YP_002465124.1| - 0.0002 21.7 0.0 0.00096 19.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219850692|ref|YP_002465124.1| - 0.00048 20.5 0.0 0.0009 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219850692|ref|YP_002465124.1| - 0.0011 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|219850692|ref|YP_002465124.1| - 0.0012 18.2 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|219850692|ref|YP_002465124.1| - 0.0046 16.1 0.0 0.0065 15.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|219850692|ref|YP_002465124.1| - 0.0054 15.8 0.0 0.0092 15.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|219850692|ref|YP_002465124.1| - 0.011 14.6 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase Cons_hypoth95 PF03602.10 gi|219850692|ref|YP_002465124.1| - 0.02 14.2 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|219850692|ref|YP_002465124.1| - 0.047 12.3 0.0 0.073 11.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_26 PF13659.1 gi|219850692|ref|YP_002465124.1| - 0.061 13.3 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Spore_YtfJ PF09579.5 gi|219850693|ref|YP_002465125.1| - 4e-16 58.6 3.1 4e-16 58.6 2.2 1.5 2 0 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|219850694|ref|YP_002465126.1| - 3.5e-06 26.8 0.3 3.5e-06 26.8 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2953) NRDD PF13597.1 gi|219850696|ref|YP_002465128.1| - 8e-127 423.5 0.0 1e-126 423.2 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|219850696|ref|YP_002465128.1| - 0.0023 18.3 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 ATP cone domain Glutaredoxin PF00462.19 gi|219850697|ref|YP_002465129.1| - 9.9e-06 25.4 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Polysacc_synt PF01943.12 gi|219850698|ref|YP_002465130.1| - 1.4e-24 86.8 16.3 1.4e-24 86.8 11.3 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|219850698|ref|YP_002465130.1| - 2.1e-17 63.2 16.8 2.1e-17 63.2 11.7 3.7 2 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|219850698|ref|YP_002465130.1| - 5.5e-13 48.9 27.4 5.5e-13 48.9 19.0 2.9 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|219850698|ref|YP_002465130.1| - 3.2e-05 22.5 19.6 3.2e-05 22.5 13.6 2.3 1 1 0 2 2 2 1 MviN-like protein LigT_PEase PF02834.11 gi|219850699|ref|YP_002465131.1| - 2e-23 82.1 0.1 1.9e-13 50.2 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|219850699|ref|YP_002465131.1| - 5.9e-11 42.3 0.0 7.2e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|219850699|ref|YP_002465131.1| - 0.0002 21.1 0.0 0.00033 20.4 0.0 1.4 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|219850700|ref|YP_002465132.1| - 5.2e-44 148.7 0.0 9.5e-44 147.9 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|219850700|ref|YP_002465132.1| - 1.6e-09 37.9 0.0 3.2e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Cyclin_C PF02984.14 gi|219850700|ref|YP_002465132.1| - 0.18 11.7 0.1 0.43 10.5 0.0 1.6 2 0 0 2 2 2 0 Cyclin, C-terminal domain P-II PF00543.17 gi|219850701|ref|YP_002465133.1| - 2.6e-39 133.7 2.8 3e-39 133.6 1.9 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Response_reg PF00072.19 gi|219850702|ref|YP_002465134.1| - 1.3e-18 66.9 0.0 2.2e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219850702|ref|YP_002465134.1| - 2.9e-11 43.0 0.0 5.3e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219850702|ref|YP_002465134.1| - 8.3e-05 22.5 0.0 0.00037 20.4 0.0 2.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|219850702|ref|YP_002465134.1| - 0.0069 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|219850702|ref|YP_002465134.1| - 0.099 12.2 0.5 0.24 10.9 0.4 1.7 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain EamA PF00892.15 gi|219850703|ref|YP_002465135.1| - 1.3e-19 70.4 34.3 5.4e-12 45.8 7.1 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|219850703|ref|YP_002465135.1| - 9.1e-06 25.8 33.4 2.2e-05 24.6 5.7 3.2 1 1 2 4 4 4 2 Multidrug resistance efflux transporter Multi_Drug_Res PF00893.14 gi|219850703|ref|YP_002465135.1| - 0.0016 18.8 17.7 0.086 13.3 2.5 3.6 2 2 1 3 3 3 2 Small Multidrug Resistance protein Methyltransf_31 PF13847.1 gi|219850704|ref|YP_002465136.1| - 3.6e-21 75.3 0.0 4.3e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219850704|ref|YP_002465136.1| - 7.2e-17 61.2 0.0 8.9e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|219850704|ref|YP_002465136.1| - 4.4e-14 52.9 0.1 6.7e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219850704|ref|YP_002465136.1| - 3.7e-13 49.7 0.0 5.9e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219850704|ref|YP_002465136.1| - 2.7e-10 40.6 0.0 3.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219850704|ref|YP_002465136.1| - 4.4e-09 36.2 0.0 8.3e-09 35.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219850704|ref|YP_002465136.1| - 2.3e-07 30.8 0.5 5.5e-07 29.6 0.3 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219850704|ref|YP_002465136.1| - 3.4e-07 30.5 0.1 4.7e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219850704|ref|YP_002465136.1| - 6.9e-06 25.5 0.0 9e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|219850704|ref|YP_002465136.1| - 2.9e-05 23.7 0.0 4.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|219850704|ref|YP_002465136.1| - 0.00016 20.7 0.0 0.00025 20.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase GidB PF02527.10 gi|219850704|ref|YP_002465136.1| - 0.0002 20.5 0.0 0.00026 20.1 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_2 PF00891.13 gi|219850704|ref|YP_002465136.1| - 0.00063 19.0 0.1 0.00092 18.4 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_9 PF08003.6 gi|219850704|ref|YP_002465136.1| - 0.00077 18.2 0.0 0.00098 17.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|219850704|ref|YP_002465136.1| - 0.0012 18.0 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|219850704|ref|YP_002465136.1| - 0.007 16.0 0.0 0.0095 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|219850704|ref|YP_002465136.1| - 0.014 16.2 0.0 0.024 15.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|219850704|ref|YP_002465136.1| - 0.031 13.3 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|219850704|ref|YP_002465136.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase SMC_N PF02463.14 gi|219850705|ref|YP_002465137.1| - 1.9e-15 56.6 0.0 5.6e-15 55.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|219850705|ref|YP_002465137.1| - 4.9e-11 43.3 39.2 2.7e-05 24.5 27.1 4.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|219850705|ref|YP_002465137.1| - 2.9e-08 34.0 0.0 0.00014 21.9 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|219850705|ref|YP_002465137.1| - 3.7e-05 23.1 0.0 9.9e-05 21.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|219850705|ref|YP_002465137.1| - 4.2e-05 22.7 0.0 0.00017 20.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|219850705|ref|YP_002465137.1| - 0.0015 18.7 5.4 3.8 7.8 2.9 4.2 2 1 0 2 2 2 2 ABC transporter PLAC9 PF15205.1 gi|219850705|ref|YP_002465137.1| - 0.39 11.0 1.8 0.64 10.3 0.1 2.3 2 1 1 3 3 3 0 Placenta-specific protein 9 Metallophos PF00149.23 gi|219850706|ref|YP_002465138.1| - 6.5e-13 48.5 0.0 1.2e-12 47.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|219850706|ref|YP_002465138.1| - 5.5e-08 32.8 0.0 1.1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Tautomerase PF01361.16 gi|219850707|ref|YP_002465139.1| - 2.1e-11 43.2 0.1 2.2e-11 43.1 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|219850707|ref|YP_002465139.1| - 6.3e-08 32.5 0.1 7.2e-08 32.3 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme DUF2590 PF10761.4 gi|219850707|ref|YP_002465139.1| - 0.0074 16.0 0.3 0.0093 15.6 0.2 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2590) DUF503 PF04456.7 gi|219850707|ref|YP_002465139.1| - 0.029 13.9 0.0 0.056 13.0 0.0 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF503) MarR PF01047.17 gi|219850707|ref|YP_002465139.1| - 0.047 13.4 0.0 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF21 PF01595.15 gi|219850708|ref|YP_002465140.1| - 8e-55 184.9 6.7 1.1e-54 184.5 4.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|219850708|ref|YP_002465140.1| - 1e-24 86.0 0.2 3.7e-23 81.0 0.1 2.7 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|219850708|ref|YP_002465140.1| - 2e-12 46.6 0.2 5.1e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 CBS domain RNase_HII PF01351.13 gi|219850709|ref|YP_002465141.1| - 1.4e-28 99.9 0.1 2.3e-28 99.2 0.0 1.3 2 0 0 2 2 2 1 Ribonuclease HII Ecotin PF03974.8 gi|219850710|ref|YP_002465142.1| - 0.0043 16.7 0.0 0.0084 15.8 0.0 1.5 1 1 0 1 1 1 1 Ecotin tRNA_anti-codon PF01336.20 gi|219850711|ref|YP_002465143.1| - 2.4e-10 40.0 0.2 0.00024 20.9 0.0 2.6 3 0 0 3 3 3 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|219850711|ref|YP_002465143.1| - 0.0064 16.2 0.0 0.14 11.8 0.0 2.5 3 0 0 3 3 3 1 Replication factor-A C terminal domain DUF1858 PF08984.6 gi|219850712|ref|YP_002465144.1| - 1.3e-10 40.7 0.0 1.4e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) ScdA_N PF04405.9 gi|219850712|ref|YP_002465144.1| - 0.08 12.3 0.1 0.52 9.7 0.1 1.9 1 1 0 1 1 1 0 Domain of Unknown function (DUF542) zf-like PF04071.7 gi|219850713|ref|YP_002465145.1| - 3.9e-29 100.1 7.6 6.4e-29 99.5 5.3 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain Peptidase_M20 PF01546.23 gi|219850713|ref|YP_002465145.1| - 0.081 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 NRDD PF13597.1 gi|219850714|ref|YP_002465146.1| - 2.1e-13 49.2 2.3 2.1e-13 49.2 1.6 2.6 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.1 gi|219850714|ref|YP_002465146.1| - 0.0076 15.4 16.7 0.16 11.2 0.3 3.7 3 1 1 4 4 4 2 zinc-ribbon domain DZR PF12773.2 gi|219850714|ref|YP_002465146.1| - 0.0089 15.8 15.9 0.14 12.0 2.7 3.2 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|219850714|ref|YP_002465146.1| - 0.018 14.4 15.4 0.88 9.1 0.3 3.6 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|219850714|ref|YP_002465146.1| - 0.019 14.6 0.8 0.019 14.6 0.5 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|219850714|ref|YP_002465146.1| - 0.075 12.4 7.8 0.46 9.9 1.3 3.1 2 1 0 2 2 2 0 RecR protein PolC_DP2 PF03833.8 gi|219850714|ref|YP_002465146.1| - 0.1 10.2 7.0 0.14 9.7 4.9 1.3 1 1 0 1 1 1 0 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|219850714|ref|YP_002465146.1| - 0.26 11.2 14.5 1.2 9.0 10.1 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain A2L_zn_ribbon PF08792.5 gi|219850714|ref|YP_002465146.1| - 0.9 9.0 19.0 0.12 11.9 1.3 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-tcix PF14952.1 gi|219850714|ref|YP_002465146.1| - 1.4 8.3 9.7 4.8 6.6 1.5 3.4 2 1 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding NOB1_Zn_bind PF08772.6 gi|219850714|ref|YP_002465146.1| - 1.5 8.6 9.9 1.8 8.4 0.5 3.1 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.14 gi|219850714|ref|YP_002465146.1| - 4 7.0 10.8 7.6 6.1 0.1 3.5 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_2 PF14445.1 gi|219850714|ref|YP_002465146.1| - 4.6 7.2 12.2 0.48 10.4 3.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 FYVE PF01363.16 gi|219850714|ref|YP_002465146.1| - 5.2 7.0 17.4 2.4 8.0 6.0 2.8 1 1 1 2 2 1 0 FYVE zinc finger Zn_Tnp_IS1595 PF12760.2 gi|219850714|ref|YP_002465146.1| - 5.3 6.9 24.1 0.78 9.5 1.2 4.5 2 1 2 4 4 4 0 Transposase zinc-ribbon domain OMPdecase PF00215.19 gi|219850715|ref|YP_002465147.1| - 4.5e-33 114.5 0.0 6e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DS PF01916.12 gi|219850716|ref|YP_002465148.1| - 1.7e-80 270.3 0.0 2.1e-80 270.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1743 PF08489.6 gi|219850717|ref|YP_002465149.1| - 1.4e-36 124.8 0.0 2e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.17 gi|219850717|ref|YP_002465149.1| - 0.051 13.3 0.4 0.096 12.4 0.3 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_3 PF01381.17 gi|219850718|ref|YP_002465150.1| - 5.9e-12 45.2 0.1 1.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|219850718|ref|YP_002465150.1| - 7.7e-07 29.0 0.2 2e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|219850718|ref|YP_002465150.1| - 2.6e-06 27.5 2.2 6.9e-06 26.1 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|219850718|ref|YP_002465150.1| - 0.0044 16.6 0.0 0.014 14.9 0.0 1.8 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|219850718|ref|YP_002465150.1| - 0.009 15.2 0.1 0.051 12.8 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.17 gi|219850718|ref|YP_002465150.1| - 0.096 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|219850718|ref|YP_002465150.1| - 0.11 12.2 0.0 0.38 10.4 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_25 PF13413.1 gi|219850718|ref|YP_002465150.1| - 0.13 11.9 0.2 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Cpn60_TCP1 PF00118.19 gi|219850719|ref|YP_002465151.1| - 5.4e-171 569.4 16.9 6.2e-171 569.2 11.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF1894 PF08979.6 gi|219850720|ref|YP_002465152.1| - 1e-35 121.6 0.0 1.1e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.6 gi|219850721|ref|YP_002465153.1| - 2.5e-53 179.7 0.1 2.8e-53 179.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) PEGA PF08308.6 gi|219850722|ref|YP_002465154.1| - 3.1e-12 46.0 32.0 0.0046 16.7 0.9 6.0 5 1 0 5 5 5 5 PEGA domain SufE PF02657.10 gi|219850722|ref|YP_002465154.1| - 0.00062 19.3 0.0 1.9 8.0 0.0 3.6 3 1 1 4 4 4 2 Fe-S metabolism associated domain MoaE PF02391.12 gi|219850722|ref|YP_002465154.1| - 0.059 13.1 2.8 17 5.2 0.0 3.8 4 0 0 4 4 4 0 MoaE protein CutA1 PF03091.10 gi|219850723|ref|YP_002465155.1| - 7.9e-32 108.9 0.0 8.9e-32 108.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Aminotran_1_2 PF00155.16 gi|219850724|ref|YP_002465156.1| - 4.1e-61 206.9 0.0 4.7e-61 206.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|219850724|ref|YP_002465156.1| - 0.00092 17.5 0.0 0.0013 17.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Orn_Arg_deC_N PF02784.11 gi|219850725|ref|YP_002465157.1| - 6.1e-56 189.3 0.0 8e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|219850725|ref|YP_002465157.1| - 2e-21 75.8 0.0 3.4e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|219850725|ref|YP_002465157.1| - 1.1e-08 34.8 0.1 2.6e-08 33.6 0.1 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain tRNA_anti-codon PF01336.20 gi|219850726|ref|YP_002465158.1| - 6.9e-13 48.2 0.1 5.1e-07 29.4 0.0 3.9 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rad51 PF08423.6 gi|219850727|ref|YP_002465159.1| - 7.3e-84 280.6 0.0 9.8e-84 280.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|219850727|ref|YP_002465159.1| - 5.8e-15 55.2 1.9 1.5e-14 53.9 1.3 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|219850727|ref|YP_002465159.1| - 3.4e-10 39.6 0.0 8.3e-10 38.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|219850727|ref|YP_002465159.1| - 7.1e-10 38.3 0.0 1.1e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|219850727|ref|YP_002465159.1| - 9.3e-08 31.4 0.0 6.2e-06 25.5 0.0 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH PF00633.18 gi|219850727|ref|YP_002465159.1| - 2.1e-07 30.2 3.5 0.0016 18.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|219850727|ref|YP_002465159.1| - 1.7e-05 24.5 0.8 4.3e-05 23.2 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|219850727|ref|YP_002465159.1| - 0.00023 21.0 0.0 0.00051 19.9 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|219850727|ref|YP_002465159.1| - 0.00023 21.0 0.0 0.00086 19.2 0.0 2.0 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|219850727|ref|YP_002465159.1| - 0.00032 20.1 0.2 0.0015 18.0 0.0 2.2 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda HhH-GPD PF00730.20 gi|219850727|ref|YP_002465159.1| - 0.0018 18.5 0.0 0.0032 17.7 0.0 1.5 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.2 gi|219850727|ref|YP_002465159.1| - 0.0067 16.3 0.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif CobU PF02283.11 gi|219850727|ref|YP_002465159.1| - 0.011 15.1 0.1 0.39 10.0 0.0 2.3 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_22 PF13401.1 gi|219850727|ref|YP_002465159.1| - 0.029 14.5 0.0 0.063 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF4332 PF14229.1 gi|219850727|ref|YP_002465159.1| - 0.04 13.8 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Arch_ATPase PF01637.13 gi|219850727|ref|YP_002465159.1| - 0.041 13.5 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|219850727|ref|YP_002465159.1| - 0.044 13.7 0.1 0.22 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|219850727|ref|YP_002465159.1| - 0.12 12.5 0.1 0.41 10.8 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sec63 PF02889.11 gi|219850727|ref|YP_002465159.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Sec63 Brl domain Hydrolase_3 PF08282.7 gi|219850728|ref|YP_002465160.1| - 1.9e-33 116.1 0.1 1.5e-19 70.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|219850728|ref|YP_002465160.1| - 1.5e-08 34.2 0.1 8.2e-08 31.8 0.0 1.9 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|219850728|ref|YP_002465160.1| - 1.6e-08 35.2 1.5 0.00053 20.4 0.1 3.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219850728|ref|YP_002465160.1| - 8e-08 32.6 0.7 7.9e-06 26.1 0.0 2.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|219850728|ref|YP_002465160.1| - 0.018 14.9 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PRC PF05239.11 gi|219850729|ref|YP_002465161.1| - 5.2e-13 48.6 0.6 6.1e-13 48.4 0.4 1.0 1 0 0 1 1 1 1 PRC-barrel domain Ion_trans PF00520.26 gi|219850731|ref|YP_002465163.1| - 3.5e-15 55.7 12.8 3.5e-15 55.7 8.9 1.4 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|219850731|ref|YP_002465163.1| - 2.2e-13 49.7 6.2 2.2e-13 49.7 4.3 2.3 2 1 0 2 2 2 1 Ion channel SHOCT PF09851.4 gi|219850731|ref|YP_002465163.1| - 0.00056 19.2 0.9 0.0017 17.7 0.6 1.8 1 0 0 1 1 1 1 Short C-terminal domain AgrB PF04647.10 gi|219850731|ref|YP_002465163.1| - 1.4 7.9 17.8 0.12 11.3 6.0 2.2 2 0 0 2 2 2 0 Accessory gene regulator B HATPase_c PF02518.21 gi|219850732|ref|YP_002465164.1| - 5.2e-09 35.8 0.0 7.7e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|219850732|ref|YP_002465164.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219850733|ref|YP_002465165.1| - 7.4e-41 138.7 2.6 3e-11 43.6 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|219850733|ref|YP_002465165.1| - 4.3e-40 136.0 3.0 4.4e-11 42.5 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|219850733|ref|YP_002465165.1| - 2.8e-35 120.2 0.0 2.7e-11 43.3 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|219850733|ref|YP_002465165.1| - 1.8e-25 89.1 0.1 2e-06 27.8 0.0 6.0 5 1 0 5 5 5 5 PAS fold HisKA_2 PF07568.7 gi|219850733|ref|YP_002465165.1| - 5.6e-25 86.9 1.9 3.6e-24 84.4 1.3 2.6 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.19 gi|219850733|ref|YP_002465165.1| - 1.1e-22 80.1 0.0 5.9e-22 77.7 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|219850733|ref|YP_002465165.1| - 8.7e-21 73.0 0.4 6.4e-06 25.8 0.0 4.8 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|219850733|ref|YP_002465165.1| - 1.9e-13 50.1 0.0 6.1e-13 48.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|219850733|ref|YP_002465165.1| - 1.3e-12 47.7 0.6 8.2e-09 35.4 0.0 5.1 6 0 0 6 6 5 1 PAS fold HATPase_c_2 PF13581.1 gi|219850733|ref|YP_002465165.1| - 0.00014 21.6 0.0 0.0004 20.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|219850733|ref|YP_002465165.1| - 0.0047 17.3 1.2 0.0086 16.4 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase PET122 PF05476.6 gi|219850733|ref|YP_002465165.1| - 0.022 14.0 0.3 0.041 13.1 0.2 1.3 1 0 0 1 1 1 0 PET122 PAS_11 PF14598.1 gi|219850733|ref|YP_002465165.1| - 0.058 13.3 0.0 2.1 8.3 0.0 3.4 4 0 0 4 4 3 0 PAS domain Response_reg PF00072.19 gi|219850734|ref|YP_002465166.1| - 5.2e-20 71.5 0.2 1.1e-19 70.4 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219850734|ref|YP_002465166.1| - 1.2e-09 38.4 0.0 2.3e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219850734|ref|YP_002465166.1| - 1.7e-07 31.0 0.0 3.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219850734|ref|YP_002465166.1| - 3.7e-06 26.5 0.0 9.4e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|219850734|ref|YP_002465166.1| - 6.4e-05 22.9 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold HEAT_2 PF13646.1 gi|219850735|ref|YP_002465167.1| - 7.1e-131 426.8 32.7 1.4e-17 63.7 0.0 11.4 7 4 4 11 11 11 11 HEAT repeats HEAT PF02985.17 gi|219850735|ref|YP_002465167.1| - 2.4e-62 201.4 18.3 0.0045 16.9 0.0 23.1 24 0 0 24 24 24 16 HEAT repeat HEAT_PBS PF03130.11 gi|219850735|ref|YP_002465167.1| - 4e-53 172.4 44.8 0.00023 21.3 0.0 20.1 22 1 0 22 22 20 13 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219850735|ref|YP_002465167.1| - 5.1e-29 100.0 53.2 0.0036 17.7 0.2 18.1 15 5 5 20 20 20 10 HEAT-like repeat Arm PF00514.18 gi|219850735|ref|YP_002465167.1| - 2.1e-22 78.0 6.3 0.21 11.4 0.0 15.0 14 2 3 17 17 17 4 Armadillo/beta-catenin-like repeat Vitellogenin_N PF01347.17 gi|219850735|ref|YP_002465167.1| - 1.2e-07 30.3 0.0 6.1e-06 24.7 0.0 2.8 3 0 0 3 3 3 1 Lipoprotein amino terminal region Adaptin_N PF01602.15 gi|219850735|ref|YP_002465167.1| - 6.4e-07 28.0 0.8 0.1 10.8 0.0 5.8 7 0 0 7 7 7 2 Adaptin N terminal region Cnd1 PF12717.2 gi|219850735|ref|YP_002465167.1| - 9.2e-06 25.6 1.4 17 5.2 0.0 8.5 7 4 3 10 10 10 0 non-SMC mitotic condensation complex subunit 1 ERAP1_C PF11838.3 gi|219850735|ref|YP_002465167.1| - 0.00031 20.1 0.8 3.3 6.8 0.0 5.6 4 2 1 6 6 6 1 ERAP1-like C-terminal domain CLASP_N PF12348.3 gi|219850735|ref|YP_002465167.1| - 0.0013 18.1 2.4 12 5.1 0.0 5.9 6 1 0 6 6 6 0 CLASP N terminal RasGEF_N_2 PF14663.1 gi|219850735|ref|YP_002465167.1| - 0.0024 17.8 0.0 0.48 10.3 0.0 4.8 7 0 0 7 7 6 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain Aconitase_B_N PF11791.3 gi|219850735|ref|YP_002465167.1| - 0.045 13.5 0.0 94 2.7 0.0 5.4 6 1 1 7 7 7 0 Aconitate B N-terminal domain Cohesin_HEAT PF12765.2 gi|219850735|ref|YP_002465167.1| - 0.57 10.2 19.8 6.9 6.7 0.1 7.4 6 1 1 7 7 7 0 HEAT repeat associated with sister chromatid cohesion Radical_SAM PF04055.16 gi|219850736|ref|YP_002465168.1| - 2.4e-12 47.3 0.1 3.4e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|219850737|ref|YP_002465169.1| - 2.3e-17 62.7 0.1 3.6e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|219850737|ref|YP_002465169.1| - 7e-14 51.7 0.0 8.5e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|219850737|ref|YP_002465169.1| - 1.2e-12 47.8 0.0 1.9e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|219850737|ref|YP_002465169.1| - 1.2e-09 38.2 0.0 1.5e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|219850737|ref|YP_002465169.1| - 8.3e-05 22.2 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|219850737|ref|YP_002465169.1| - 0.029 14.3 0.1 0.091 12.7 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|219850737|ref|YP_002465169.1| - 0.063 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|219850737|ref|YP_002465169.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PAS_9 PF13426.1 gi|219850738|ref|YP_002465170.1| - 1.4e-57 192.4 0.2 2.5e-12 47.0 0.0 5.9 6 0 0 6 6 6 5 PAS domain PAS PF00989.19 gi|219850738|ref|YP_002465170.1| - 7.7e-50 167.4 0.3 5.9e-11 42.1 0.0 6.5 5 2 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|219850738|ref|YP_002465170.1| - 9.8e-46 154.3 0.1 6.8e-12 45.4 0.0 5.8 5 1 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|219850738|ref|YP_002465170.1| - 1.9e-35 120.8 0.0 1.8e-15 56.7 0.0 5.6 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|219850738|ref|YP_002465170.1| - 1.3e-23 81.9 0.0 0.00018 21.2 0.0 6.3 7 0 0 7 7 7 4 PAS domain HATPase_c PF02518.21 gi|219850738|ref|YP_002465170.1| - 8.5e-12 44.7 0.1 1.9e-11 43.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|219850738|ref|YP_002465170.1| - 0.00019 21.3 0.0 0.82 9.6 0.0 3.8 3 0 0 3 3 3 1 PAS domain DUF4118 PF13493.1 gi|219850738|ref|YP_002465170.1| - 0.0015 18.7 6.4 0.0027 17.8 4.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_2 PF13581.1 gi|219850738|ref|YP_002465170.1| - 0.01 15.5 0.1 0.042 13.6 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PfkB PF00294.19 gi|219850738|ref|YP_002465170.1| - 0.11 11.6 0.0 0.41 9.7 0.0 1.8 2 0 0 2 2 2 0 pfkB family carbohydrate kinase HrcA_DNA-bdg PF03444.10 gi|219850739|ref|YP_002465171.1| - 2.4e-36 123.0 0.1 5.3e-36 121.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|219850739|ref|YP_002465171.1| - 8.7e-25 86.2 2.3 1.9e-11 43.5 0.1 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|219850739|ref|YP_002465171.1| - 1.9e-06 27.9 0.9 3e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|219850739|ref|YP_002465171.1| - 2.7e-06 26.9 0.0 5.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|219850739|ref|YP_002465171.1| - 0.076 13.3 0.0 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|219850739|ref|YP_002465171.1| - 0.13 11.9 0.0 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1119 PF06550.6 gi|219850740|ref|YP_002465172.1| - 8.1e-82 274.5 19.4 9.8e-82 274.2 13.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|219850740|ref|YP_002465172.1| - 8.3e-07 28.7 2.6 8.3e-07 28.7 1.8 2.1 1 1 1 2 2 2 1 Signal peptide peptidase DUF543 PF04418.7 gi|219850740|ref|YP_002465172.1| - 0.58 10.1 5.6 0.14 12.1 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF543) IncA PF04156.9 gi|219850741|ref|YP_002465173.1| - 0.0033 17.0 1.4 0.0044 16.6 0.9 1.2 1 0 0 1 1 1 1 IncA protein EI24 PF07264.6 gi|219850741|ref|YP_002465173.1| - 0.0059 16.0 2.2 0.0065 15.9 1.5 1.1 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) Pico_P2B PF01552.12 gi|219850741|ref|YP_002465173.1| - 0.051 13.7 1.1 0.076 13.1 0.8 1.4 1 0 0 1 1 1 0 Picornavirus 2B protein MS_channel PF00924.13 gi|219850741|ref|YP_002465173.1| - 9.7 5.4 8.1 5 6.4 4.5 1.3 2 0 0 2 2 2 0 Mechanosensitive ion channel XPG_I PF00867.13 gi|219850742|ref|YP_002465174.1| - 1.1e-25 89.4 0.0 1.8e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|219850742|ref|YP_002465174.1| - 3.2e-18 65.8 0.0 4.9e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|219850742|ref|YP_002465174.1| - 0.0029 17.8 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold PAS_9 PF13426.1 gi|219850743|ref|YP_002465175.1| - 1.6e-18 66.9 0.0 3.7e-18 65.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219850743|ref|YP_002465175.1| - 4.4e-14 52.2 0.0 8.3e-14 51.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|219850743|ref|YP_002465175.1| - 5.6e-12 45.3 0.0 1.1e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219850743|ref|YP_002465175.1| - 3.8e-06 26.8 0.0 8.1e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219850743|ref|YP_002465175.1| - 6.4e-06 25.8 0.0 1.7e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|219850743|ref|YP_002465175.1| - 8.8e-06 25.7 0.0 2.8e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|219850743|ref|YP_002465175.1| - 2e-05 24.5 0.1 9.1e-05 22.4 0.0 2.1 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|219850743|ref|YP_002465175.1| - 0.00011 21.7 1.9 0.0002 20.8 1.2 1.6 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|219850743|ref|YP_002465175.1| - 0.067 12.8 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219850743|ref|YP_002465175.1| - 0.14 12.1 0.1 0.32 11.0 0.1 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain MFS_1 PF07690.11 gi|219850744|ref|YP_002465176.1| - 8.2e-53 179.3 46.3 8.2e-53 179.3 32.1 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219850744|ref|YP_002465176.1| - 7.2e-10 38.0 41.7 3e-06 26.0 11.4 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|219850744|ref|YP_002465176.1| - 0.00026 19.2 8.2 0.00034 18.8 2.8 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector NosD PF05048.8 gi|219850745|ref|YP_002465177.1| - 5.7e-33 114.0 21.8 5.7e-33 114.0 15.1 1.5 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219850745|ref|YP_002465177.1| - 5e-09 36.1 12.3 5e-09 36.1 8.5 2.3 1 1 1 2 2 2 2 Right handed beta helix region PepSY_TM PF03929.11 gi|219850747|ref|YP_002465179.1| - 0.94 10.0 0.0 0.94 10.0 0.0 3.9 5 0 0 5 5 5 0 PepSY-associated TM helix PrsW-protease PF13367.1 gi|219850748|ref|YP_002465180.1| - 4.9e-28 97.6 9.1 6.8e-28 97.1 6.3 1.1 1 0 0 1 1 1 1 Protease prsW family DUF2324 PF10086.4 gi|219850748|ref|YP_002465180.1| - 0.014 14.5 2.9 0.57 9.3 0.2 2.7 2 1 0 2 2 2 0 Putative membrane peptidase family (DUF2324) HTH_20 PF12840.2 gi|219850749|ref|YP_002465181.1| - 3.3e-09 36.4 0.0 5.4e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|219850749|ref|YP_002465181.1| - 0.00017 20.9 0.1 0.0003 20.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219850749|ref|YP_002465181.1| - 0.0016 18.0 0.1 0.0029 17.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219850749|ref|YP_002465181.1| - 0.0035 16.9 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|219850749|ref|YP_002465181.1| - 0.0045 16.6 0.1 0.0095 15.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|219850749|ref|YP_002465181.1| - 0.0083 15.4 0.1 0.018 14.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|219850749|ref|YP_002465181.1| - 0.031 13.9 0.1 0.056 13.0 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF520 PF04461.8 gi|219850749|ref|YP_002465181.1| - 0.049 13.4 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF520) HTH_DeoR PF08220.7 gi|219850749|ref|YP_002465181.1| - 0.064 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain CDP-OH_P_transf PF01066.16 gi|219850750|ref|YP_002465182.1| - 5.8e-14 52.2 3.9 5.8e-14 52.2 2.7 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|219850751|ref|YP_002465183.1| - 1.3e-14 54.5 0.0 2.8e-14 53.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|219850751|ref|YP_002465183.1| - 3.6e-08 34.2 0.0 6e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|219850751|ref|YP_002465183.1| - 0.00068 19.6 0.7 0.0023 17.8 0.2 1.9 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|219850751|ref|YP_002465183.1| - 0.0061 16.4 0.7 0.24 11.2 0.0 2.2 1 1 0 2 2 2 1 AAA domain UPF0180 PF03698.8 gi|219850751|ref|YP_002465183.1| - 0.041 13.7 0.0 8.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) CoaE PF01121.15 gi|219850751|ref|YP_002465183.1| - 0.055 12.8 0.5 0.055 12.8 0.3 1.9 2 1 1 3 3 3 0 Dephospho-CoA kinase ATP_bind_2 PF03668.10 gi|219850751|ref|YP_002465183.1| - 0.059 12.4 0.4 1.6 7.7 0.3 2.1 1 1 0 1 1 1 0 P-loop ATPase protein family DUF2075 PF09848.4 gi|219850751|ref|YP_002465183.1| - 0.14 11.0 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Aminotran_1_2 PF00155.16 gi|219850752|ref|YP_002465184.1| - 6e-48 163.6 0.0 7e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|219850752|ref|YP_002465184.1| - 0.0004 18.7 0.0 0.0051 15.1 0.0 2.1 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|219850752|ref|YP_002465184.1| - 0.00047 18.9 0.0 0.0018 16.9 0.0 1.8 2 0 0 2 2 2 1 Allinase Aminotran_3 PF00202.16 gi|219850753|ref|YP_002465185.1| - 3e-94 315.6 0.2 5.7e-94 314.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|219850753|ref|YP_002465185.1| - 0.089 11.5 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V GMP_synt_C PF00958.17 gi|219850754|ref|YP_002465186.1| - 2.4e-27 94.4 0.0 5.1e-27 93.4 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|219850754|ref|YP_002465186.1| - 2.3e-10 39.8 0.0 8.9e-06 24.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|219850754|ref|YP_002465186.1| - 5.6e-07 29.3 0.0 9.2e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|219850754|ref|YP_002465186.1| - 3e-05 22.7 0.1 0.0011 17.5 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|219850754|ref|YP_002465186.1| - 0.00035 19.9 0.0 0.0024 17.2 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|219850754|ref|YP_002465186.1| - 0.0061 16.3 0.0 0.0087 15.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|219850754|ref|YP_002465186.1| - 0.012 14.7 0.0 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 Arginosuccinate synthase ThiI PF02568.9 gi|219850754|ref|YP_002465186.1| - 0.013 15.0 0.0 0.054 12.9 0.0 2.0 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) CTP_synth_N PF06418.9 gi|219850755|ref|YP_002465187.1| - 3.8e-122 406.7 0.2 5e-122 406.2 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|219850755|ref|YP_002465187.1| - 1.1e-49 168.5 0.0 1.8e-49 167.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|219850755|ref|YP_002465187.1| - 1.3e-08 34.5 0.0 3.2e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|219850755|ref|YP_002465187.1| - 5.5e-07 29.2 0.0 2.1e-05 24.1 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 4HBT PF03061.17 gi|219850756|ref|YP_002465188.1| - 3.8e-07 30.1 0.1 6.2e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|219850756|ref|YP_002465188.1| - 0.00012 21.9 0.2 0.00013 21.7 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Glycos_transf_2 PF00535.21 gi|219850758|ref|YP_002465190.1| - 1.3e-19 70.5 0.0 1.5e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219850758|ref|YP_002465190.1| - 2.6e-13 50.3 0.4 7.3e-13 48.8 0.3 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TPR_11 PF13414.1 gi|219850759|ref|YP_002465191.1| - 6.6e-08 32.0 14.2 1.5e-05 24.5 0.2 6.8 6 1 3 9 9 9 2 TPR repeat TPR_16 PF13432.1 gi|219850759|ref|YP_002465191.1| - 8.1e-07 29.5 35.6 9.9e-05 22.9 1.1 7.8 6 1 3 9 9 9 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219850759|ref|YP_002465191.1| - 1.2e-06 28.5 30.6 1.9 9.3 0.1 8.8 5 3 4 9 9 9 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219850759|ref|YP_002465191.1| - 1.6e-06 28.3 27.3 0.0086 16.4 0.2 6.4 4 2 3 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219850759|ref|YP_002465191.1| - 6.4e-06 25.9 2.5 1 9.7 0.1 5.7 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219850759|ref|YP_002465191.1| - 7e-05 22.4 18.4 2.9 8.0 0.1 8.5 10 1 0 10 10 10 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|219850759|ref|YP_002465191.1| - 0.0058 16.9 22.3 0.13 12.7 0.3 8.0 9 0 0 9 9 7 1 Tetratricopeptide repeat DLH PF01738.13 gi|219850759|ref|YP_002465191.1| - 0.017 14.4 0.1 0.03 13.6 0.1 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family TPR_1 PF00515.23 gi|219850759|ref|YP_002465191.1| - 0.02 14.5 5.5 36 4.1 0.0 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219850759|ref|YP_002465191.1| - 0.049 13.4 0.7 18 5.4 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|219850759|ref|YP_002465191.1| - 4.7 7.4 11.7 6.6 6.9 0.1 5.0 4 1 1 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF2791 PF10923.3 gi|219850760|ref|YP_002465192.1| - 2.1e-119 398.8 0.0 2.3e-119 398.6 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.1 gi|219850760|ref|YP_002465192.1| - 9.1e-05 22.5 0.1 0.00018 21.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|219850760|ref|YP_002465192.1| - 0.00028 21.0 0.0 0.0018 18.4 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|219850760|ref|YP_002465192.1| - 0.049 13.0 0.1 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_35 PF14516.1 gi|219850760|ref|YP_002465192.1| - 0.057 12.0 0.0 0.086 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DAP3 PF10236.4 gi|219850760|ref|YP_002465192.1| - 0.059 12.2 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_19 PF13245.1 gi|219850760|ref|YP_002465192.1| - 0.079 12.7 0.1 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain Thymidylat_synt PF00303.14 gi|219850761|ref|YP_002465193.1| - 1.2e-38 132.6 0.1 4e-37 127.6 0.1 2.0 1 1 0 1 1 1 1 Thymidylate synthase CBM_6 PF03422.10 gi|219850763|ref|YP_002465195.1| - 4e-101 333.9 59.9 6.9e-23 81.1 1.1 7.7 6 4 3 9 9 9 5 Carbohydrate binding module (family 6) Lipase_GDSL PF00657.17 gi|219850763|ref|YP_002465195.1| - 2.2e-16 60.4 1.0 4.5e-16 59.3 0.7 1.6 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|219850763|ref|YP_002465195.1| - 0.002 17.8 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family YfhO PF09586.5 gi|219850763|ref|YP_002465195.1| - 0.018 13.1 0.9 0.57 8.1 0.1 2.9 4 0 0 4 4 4 0 Bacterial membrane protein YfhO PAS_9 PF13426.1 gi|219850764|ref|YP_002465196.1| - 1.1e-37 128.5 0.0 4.2e-14 52.7 0.0 4.4 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|219850764|ref|YP_002465196.1| - 1e-29 102.7 0.0 4.3e-12 46.0 0.0 4.7 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|219850764|ref|YP_002465196.1| - 1.7e-29 101.9 0.0 1.2e-16 60.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|219850764|ref|YP_002465196.1| - 6.3e-27 93.2 2.2 1.1e-26 92.4 0.3 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|219850764|ref|YP_002465196.1| - 1.2e-21 75.6 0.0 1e-07 31.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.19 gi|219850764|ref|YP_002465196.1| - 9.3e-20 70.7 0.0 2.4e-19 69.3 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|219850764|ref|YP_002465196.1| - 1.1e-14 54.2 0.0 2.9e-07 30.4 0.0 3.8 4 0 0 4 4 4 2 PAS fold GAF_3 PF13492.1 gi|219850764|ref|YP_002465196.1| - 1e-08 35.3 0.0 2.7e-08 33.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|219850764|ref|YP_002465196.1| - 1.3e-08 34.5 0.0 4.1e-08 32.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|219850764|ref|YP_002465196.1| - 9.4e-08 32.6 0.0 2.9e-07 31.0 0.0 1.8 1 0 0 1 1 1 1 GAF domain HWE_HK PF07536.9 gi|219850764|ref|YP_002465196.1| - 6.9e-07 29.6 0.0 2e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.2 gi|219850764|ref|YP_002465196.1| - 6e-06 26.2 0.8 0.27 11.2 0.0 4.3 3 1 0 3 3 3 1 PAS fold GAF PF01590.21 gi|219850764|ref|YP_002465196.1| - 9.1e-05 22.6 0.1 0.00089 19.4 0.0 2.5 1 1 1 2 2 2 1 GAF domain eIF-5_eIF-2B PF01873.12 gi|219850765|ref|YP_002465197.1| - 2.6e-39 133.7 0.0 4.4e-39 132.9 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|219850765|ref|YP_002465197.1| - 1.2e-06 28.1 0.2 3.2e-06 26.8 0.1 1.7 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.5 gi|219850765|ref|YP_002465197.1| - 0.006 16.5 1.0 0.013 15.3 0.2 1.9 2 0 0 2 2 2 1 Zinc ribbon domain ZF-HD_dimer PF04770.7 gi|219850765|ref|YP_002465197.1| - 0.14 12.1 0.4 0.26 11.3 0.3 1.5 1 0 0 1 1 1 0 ZF-HD protein dimerisation region DNA_RNApol_7kD PF03604.8 gi|219850765|ref|YP_002465197.1| - 1.1 8.7 3.2 3 7.3 2.2 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AIRS PF00586.19 gi|219850766|ref|YP_002465198.1| - 5.2e-39 132.3 2.8 9.5e-23 80.2 0.0 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|219850766|ref|YP_002465198.1| - 1.4e-27 96.5 1.5 5.7e-24 84.8 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain IlvN PF07991.7 gi|219850767|ref|YP_002465199.1| - 4.1e-74 247.4 0.2 5.5e-74 247.0 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|219850767|ref|YP_002465199.1| - 4e-55 185.7 0.1 5.4e-55 185.3 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|219850767|ref|YP_002465199.1| - 8.5e-08 32.1 0.0 2e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|219850767|ref|YP_002465199.1| - 3.1e-05 23.1 0.0 5.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|219850767|ref|YP_002465199.1| - 3.2e-05 24.2 0.0 8.2e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|219850767|ref|YP_002465199.1| - 0.00018 21.3 0.0 0.00039 20.3 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|219850767|ref|YP_002465199.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GCHY-1 PF02649.9 gi|219850768|ref|YP_002465200.1| - 1.2e-88 296.9 2.7 1.4e-88 296.7 1.9 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 NiFeSe_Hases PF00374.14 gi|219850769|ref|YP_002465201.1| - 1.3e-34 119.9 9.1 9.2e-21 74.1 1.3 3.6 1 1 1 2 2 2 2 Nickel-dependent hydrogenase HycI PF01750.13 gi|219850770|ref|YP_002465202.1| - 8.7e-31 106.1 0.0 1.1e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.17 gi|219850771|ref|YP_002465203.1| - 1.3e-27 96.0 1.0 1.3e-27 96.0 0.7 2.1 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|219850771|ref|YP_002465203.1| - 6.5e-12 44.5 11.3 7.4e-08 31.6 0.9 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219850771|ref|YP_002465203.1| - 1.1e-10 41.1 11.8 1.1e-10 41.1 8.2 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219850771|ref|YP_002465203.1| - 3.8e-10 40.0 10.1 3.8e-10 40.0 7.0 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219850771|ref|YP_002465203.1| - 6.6e-09 35.8 11.9 6.6e-09 35.8 8.2 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219850771|ref|YP_002465203.1| - 1.8e-07 30.7 9.9 0.00014 21.6 1.3 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219850771|ref|YP_002465203.1| - 1.1e-06 28.1 13.5 0.00017 21.3 2.2 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219850771|ref|YP_002465203.1| - 4.3e-06 26.4 23.0 1.2e-05 25.1 8.4 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219850771|ref|YP_002465203.1| - 3.3e-05 24.1 11.8 0.00024 21.4 0.6 3.3 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|219850771|ref|YP_002465203.1| - 3.9e-05 24.1 13.8 0.0016 18.9 0.4 3.4 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219850771|ref|YP_002465203.1| - 7.6e-05 22.6 14.2 7.6e-05 22.6 9.9 3.2 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219850771|ref|YP_002465203.1| - 0.0001 22.3 25.1 0.0035 17.5 2.5 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219850771|ref|YP_002465203.1| - 0.00026 21.6 19.8 0.0034 18.1 2.6 3.4 3 1 1 4 4 3 2 4Fe-4S double cluster binding domain CofC PF01983.11 gi|219850771|ref|YP_002465203.1| - 0.063 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like Fer4_17 PF13534.1 gi|219850771|ref|YP_002465203.1| - 0.44 10.9 25.3 0.11 12.8 2.6 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219850771|ref|YP_002465203.1| - 0.45 11.1 31.0 0.14 12.7 3.4 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain FrhB_FdhB_C PF04432.8 gi|219850772|ref|YP_002465204.1| - 8.7e-46 155.2 0.0 1.2e-45 154.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|219850772|ref|YP_002465204.1| - 5.2e-36 122.3 0.1 9.3e-36 121.5 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term TPR_11 PF13414.1 gi|219850773|ref|YP_002465205.1| - 1.3e-34 117.6 1.9 1.3e-16 59.9 0.0 3.3 2 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|219850773|ref|YP_002465205.1| - 1.4e-30 103.6 0.0 5.3e-09 35.3 0.0 5.5 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219850773|ref|YP_002465205.1| - 7.1e-26 88.0 0.0 9.9e-07 28.2 0.0 5.6 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219850773|ref|YP_002465205.1| - 1.1e-21 75.1 6.2 2.8e-08 33.3 0.0 4.7 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219850773|ref|YP_002465205.1| - 1.4e-15 56.3 0.0 5.3e-05 23.5 0.0 4.3 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219850773|ref|YP_002465205.1| - 3.8e-15 54.4 0.4 0.00031 20.2 0.0 4.8 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219850773|ref|YP_002465205.1| - 5.7e-15 55.5 0.2 2.4e-06 28.0 0.1 3.5 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219850773|ref|YP_002465205.1| - 1.1e-14 54.1 1.5 1e-08 35.0 0.0 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219850773|ref|YP_002465205.1| - 1e-11 43.7 0.6 0.0081 15.8 0.0 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219850773|ref|YP_002465205.1| - 2.6e-11 43.6 0.1 6.3e-08 32.8 0.0 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219850773|ref|YP_002465205.1| - 3.4e-07 30.2 0.6 0.27 11.7 0.0 4.4 5 0 0 5 5 4 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|219850773|ref|YP_002465205.1| - 1.7e-06 28.0 0.1 8.1e-05 22.6 0.0 2.4 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|219850773|ref|YP_002465205.1| - 2.9e-05 23.8 0.0 0.79 9.6 0.0 3.5 2 1 0 3 3 3 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|219850773|ref|YP_002465205.1| - 0.00058 19.0 0.5 0.22 10.5 0.0 2.8 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.13 gi|219850773|ref|YP_002465205.1| - 0.00067 19.4 1.6 2.1 8.2 0.0 4.2 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|219850773|ref|YP_002465205.1| - 0.0013 18.5 4.1 2.4 8.1 0.0 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat DUF1358 PF07096.6 gi|219850773|ref|YP_002465205.1| - 0.02 14.5 0.1 5.4 6.7 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1358) TPR_3 PF07720.7 gi|219850773|ref|YP_002465205.1| - 0.024 14.4 0.0 0.99 9.2 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat SNARE_assoc PF09335.6 gi|219850774|ref|YP_002465206.1| - 4.6e-22 78.5 6.3 4.6e-22 78.5 4.3 2.3 3 0 0 3 3 3 1 SNARE associated Golgi protein zf-DHHC PF01529.15 gi|219850774|ref|YP_002465206.1| - 7.6 5.8 7.6 0.54 9.6 1.4 1.8 2 0 0 2 2 2 0 DHHC palmitoyltransferase Nramp PF01566.13 gi|219850775|ref|YP_002465207.1| - 3.5e-70 236.5 31.6 5.3e-70 235.9 21.9 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF4014 PF13198.1 gi|219850775|ref|YP_002465207.1| - 2.6 8.5 4.8 84 3.6 0.0 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4014) MgtE_N PF03448.12 gi|219850777|ref|YP_002465209.1| - 1.6e-22 79.7 8.3 2.6e-22 79.0 5.7 1.3 1 0 0 1 1 1 1 MgtE intracellular N domain CBS PF00571.23 gi|219850777|ref|YP_002465209.1| - 3.9e-15 55.3 8.5 9.6e-12 44.5 0.0 4.0 4 1 0 4 4 4 2 CBS domain PRC PF05239.11 gi|219850777|ref|YP_002465209.1| - 2.5e-06 27.2 1.0 0.0022 17.8 0.0 3.2 3 0 0 3 3 3 2 PRC-barrel domain FliG_M PF14841.1 gi|219850777|ref|YP_002465209.1| - 0.00031 20.6 2.8 0.071 13.1 0.1 2.7 1 1 1 2 2 2 2 FliG middle domain FliG_C PF01706.11 gi|219850777|ref|YP_002465209.1| - 0.024 14.5 2.1 0.12 12.3 0.4 2.3 1 1 1 2 2 2 0 FliG C-terminal domain Oxidored_nitro PF00148.14 gi|219850778|ref|YP_002465210.1| - 7.4e-72 242.1 0.0 8.6e-72 241.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|219850779|ref|YP_002465211.1| - 1.5e-64 218.1 0.0 1.8e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.13 gi|219850780|ref|YP_002465212.1| - 6.4e-97 324.0 0.0 7.8e-97 323.7 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|219850780|ref|YP_002465212.1| - 4.9e-08 32.6 0.1 6.6e-08 32.1 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|219850780|ref|YP_002465212.1| - 1e-05 24.7 0.1 1.9e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|219850780|ref|YP_002465212.1| - 0.00042 20.2 0.0 0.00075 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219850780|ref|YP_002465212.1| - 0.0048 16.9 0.2 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MipZ PF09140.6 gi|219850780|ref|YP_002465212.1| - 0.0062 15.6 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArgK PF03308.11 gi|219850780|ref|YP_002465212.1| - 0.013 14.2 0.1 0.023 13.4 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|219850780|ref|YP_002465212.1| - 0.042 13.2 0.1 0.064 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|219850780|ref|YP_002465212.1| - 0.063 14.1 0.7 0.14 12.9 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|219850780|ref|YP_002465212.1| - 0.068 12.7 0.1 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|219850780|ref|YP_002465212.1| - 0.11 11.8 0.1 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|219850780|ref|YP_002465212.1| - 0.13 12.4 0.1 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|219850780|ref|YP_002465212.1| - 0.17 11.6 0.7 0.34 10.7 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|219850780|ref|YP_002465212.1| - 0.17 10.6 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain HTH_27 PF13463.1 gi|219850782|ref|YP_002465214.1| - 0.00022 21.4 0.0 0.00025 21.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|219850782|ref|YP_002465214.1| - 0.00063 19.0 0.1 0.00082 18.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|219850782|ref|YP_002465214.1| - 0.0018 17.7 0.0 0.0021 17.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|219850782|ref|YP_002465214.1| - 0.0098 15.6 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_43 PF09904.4 gi|219850782|ref|YP_002465214.1| - 0.047 13.5 0.0 0.049 13.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Sulfolobus_pRN PF05584.6 gi|219850782|ref|YP_002465214.1| - 0.062 13.2 0.0 0.071 13.0 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_36 PF13730.1 gi|219850782|ref|YP_002465214.1| - 0.13 12.4 0.0 0.55 10.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Fer4_16 PF13484.1 gi|219850783|ref|YP_002465215.1| - 1e-07 32.6 8.1 1.9e-07 31.7 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|219850783|ref|YP_002465215.1| - 1.3e-07 31.9 9.9 2.9e-07 30.7 6.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219850783|ref|YP_002465215.1| - 4.7e-07 29.5 8.6 8.6e-07 28.6 5.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219850783|ref|YP_002465215.1| - 1e-06 28.0 12.9 0.00042 19.7 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219850783|ref|YP_002465215.1| - 2.1e-05 24.2 10.3 0.026 14.3 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219850783|ref|YP_002465215.1| - 0.00056 20.2 6.8 0.0031 17.8 4.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219850783|ref|YP_002465215.1| - 0.00062 19.9 22.7 0.0053 16.9 8.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219850783|ref|YP_002465215.1| - 0.00078 19.2 13.7 0.022 14.6 3.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219850783|ref|YP_002465215.1| - 0.0024 18.2 6.0 0.048 14.0 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219850783|ref|YP_002465215.1| - 0.0025 17.6 5.9 0.047 13.5 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219850783|ref|YP_002465215.1| - 0.0038 17.6 17.9 0.15 12.6 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219850783|ref|YP_002465215.1| - 0.006 16.8 11.5 0.57 10.6 2.4 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219850783|ref|YP_002465215.1| - 0.0069 16.3 12.1 0.03 14.3 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Dehalogenase PF13486.1 gi|219850783|ref|YP_002465215.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Reductive dehalogenase subunit PKD PF00801.15 gi|219850784|ref|YP_002465216.1| - 6.4e-141 458.3 176.9 4.6e-17 61.5 8.0 13.5 13 0 0 13 13 13 12 PKD domain Malectin PF11721.3 gi|219850784|ref|YP_002465216.1| - 2.6e-27 95.7 4.5 2.1e-25 89.4 0.0 5.4 7 0 0 7 7 7 1 Di-glucose binding within endoplasmic reticulum DUF1628 PF07790.6 gi|219850784|ref|YP_002465216.1| - 3.4e-09 37.3 3.7 5.4e-09 36.6 0.1 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|219850785|ref|YP_002465217.1| - 4.1e-11 43.4 1.0 2.2e-10 41.1 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1628) Malectin PF11721.3 gi|219850785|ref|YP_002465217.1| - 0.00035 20.3 0.1 14 5.3 0.0 3.7 3 0 0 3 3 3 3 Di-glucose binding within endoplasmic reticulum DUF237 PF03072.9 gi|219850785|ref|YP_002465217.1| - 0.00039 20.3 0.3 32 4.4 0.0 5.3 5 0 0 5 5 5 1 MG032/MG096/MG288 family 1 MCE PF02470.15 gi|219850785|ref|YP_002465217.1| - 0.11 12.5 6.5 23 5.0 0.0 5.6 6 0 0 6 6 6 0 mce related protein DUF1628 PF07790.6 gi|219850786|ref|YP_002465218.1| - 0.11 13.2 0.0 0.11 13.2 0.0 2.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|219850787|ref|YP_002465219.1| - 1.6e-08 35.1 2.8 1.9e-08 34.9 0.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Beta_helix PF13229.1 gi|219850787|ref|YP_002465219.1| - 0.00024 20.9 23.0 0.00024 20.9 15.9 4.5 2 1 2 4 4 4 2 Right handed beta helix region LAP1C PF05609.7 gi|219850788|ref|YP_002465220.1| - 0.1 11.2 0.0 0.81 8.2 0.0 2.1 2 1 0 2 2 2 0 Lamina-associated polypeptide 1C (LAP1C) Pectate_lyase_3 PF12708.2 gi|219850789|ref|YP_002465221.1| - 1.3e-08 35.2 9.5 8.6e-06 26.0 6.6 2.4 1 1 0 1 1 1 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219850789|ref|YP_002465221.1| - 9.4e-08 31.9 13.7 2.6e-06 27.3 7.8 3.0 2 1 0 2 2 2 1 Right handed beta helix region NosD PF05048.8 gi|219850789|ref|YP_002465221.1| - 0.0011 18.1 2.7 0.0017 17.5 0.5 2.1 2 1 0 2 2 2 1 Periplasmic copper-binding protein (NosD) DUF1628 PF07790.6 gi|219850789|ref|YP_002465221.1| - 0.081 13.6 0.1 0.29 11.8 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Radical_SAM PF04055.16 gi|219850790|ref|YP_002465222.1| - 2e-05 24.8 0.0 7.1e-05 23.0 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219850790|ref|YP_002465222.1| - 4.6e-05 23.5 0.0 8.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219850790|ref|YP_002465222.1| - 9.6e-05 22.3 0.0 0.00025 21.0 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Prenyltransf PF01255.14 gi|219850791|ref|YP_002465223.1| - 1.4e-69 233.6 0.0 1.7e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase zf-ribbon_3 PF13248.1 gi|219850792|ref|YP_002465224.1| - 5.9e-06 25.3 0.6 9.9e-06 24.6 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219850792|ref|YP_002465224.1| - 0.00097 18.5 1.8 0.0016 17.8 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219850792|ref|YP_002465224.1| - 0.0018 18.0 0.8 0.0033 17.2 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon Receptor_2B4 PF11465.3 gi|219850792|ref|YP_002465224.1| - 0.031 14.1 0.1 0.061 13.2 0.1 1.5 1 0 0 1 1 1 0 Natural killer cell receptor 2B4 SQS_PSY PF00494.14 gi|219850792|ref|YP_002465224.1| - 0.031 13.5 0.7 0.05 12.8 0.5 1.2 1 0 0 1 1 1 0 Squalene/phytoene synthase Nudix_N_2 PF14803.1 gi|219850792|ref|YP_002465224.1| - 0.089 12.5 2.1 4.1 7.1 0.1 2.9 2 0 0 2 2 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|219850792|ref|YP_002465224.1| - 0.73 10.0 5.1 5.3 7.2 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Prenyltransf PF01255.14 gi|219850795|ref|YP_002465227.1| - 1e-24 86.8 0.0 2.9e-24 85.4 0.0 1.6 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DNA_pol_B_thumb PF14791.1 gi|219850796|ref|YP_002465228.1| - 1.8e-21 75.5 0.0 4.2e-21 74.4 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|219850796|ref|YP_002465228.1| - 2.2e-20 72.5 0.1 3.3e-18 65.6 0.0 3.3 2 1 1 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|219850796|ref|YP_002465228.1| - 4.5e-13 49.3 0.1 1e-12 48.1 0.1 1.6 1 0 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|219850796|ref|YP_002465228.1| - 6.8e-12 45.3 0.7 5.5e-07 29.6 0.2 3.3 3 1 0 3 3 3 2 Helix-hairpin-helix domain DNA_pol_B_palm PF14792.1 gi|219850796|ref|YP_002465228.1| - 1.1e-07 31.8 0.1 3.1e-07 30.4 0.1 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|219850796|ref|YP_002465228.1| - 2.7e-06 26.7 0.1 0.023 14.4 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|219850796|ref|YP_002465228.1| - 0.029 14.2 0.0 2.2 8.2 0.0 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix motif DUF3701 PF12482.3 gi|219850796|ref|YP_002465228.1| - 0.029 14.0 0.6 0.68 9.7 0.4 2.5 2 0 0 2 2 2 0 Phage integrase protein DNA_pol_lambd_f PF10391.4 gi|219850796|ref|YP_002465228.1| - 0.036 13.5 0.0 0.53 9.8 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda DUF1059 PF06348.6 gi|219850796|ref|YP_002465228.1| - 0.042 13.6 0.1 0.29 10.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) Cdd1 PF11731.3 gi|219850796|ref|YP_002465228.1| - 0.09 12.7 0.0 2.5 8.1 0.0 2.8 2 1 0 2 2 2 0 Pathogenicity locus HHH_3 PF12836.2 gi|219850796|ref|YP_002465228.1| - 0.11 12.4 0.0 15 5.6 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix motif Fe_dep_repr_C PF02742.10 gi|219850797|ref|YP_002465229.1| - 1.8e-20 72.3 0.0 3.2e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|219850797|ref|YP_002465229.1| - 5.5e-11 42.2 0.1 1.1e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.2 gi|219850797|ref|YP_002465229.1| - 0.0007 19.2 0.3 0.011 15.3 0.1 2.5 2 0 0 2 2 2 1 MarR family AAA_assoc_C PF09821.4 gi|219850797|ref|YP_002465229.1| - 0.0019 18.4 0.1 0.0094 16.2 0.0 2.0 2 0 0 2 2 2 1 C-terminal AAA-associated domain FeoB_N PF02421.13 gi|219850798|ref|YP_002465230.1| - 8e-43 145.4 0.1 1.5e-42 144.4 0.1 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|219850798|ref|YP_002465230.1| - 1.2e-24 86.2 27.4 1.3e-14 54.0 2.2 3.2 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|219850798|ref|YP_002465230.1| - 3.2e-12 46.4 0.0 5.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|219850798|ref|YP_002465230.1| - 1.2e-11 43.8 3.2 1.2e-11 43.8 2.2 3.4 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|219850798|ref|YP_002465230.1| - 0.00012 21.3 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|219850798|ref|YP_002465230.1| - 0.046 14.2 0.0 0.082 13.4 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AIG1 PF04548.11 gi|219850798|ref|YP_002465230.1| - 0.053 12.6 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 AIG1 family KaiC PF06745.8 gi|219850799|ref|YP_002465231.1| - 0.00032 19.8 0.0 0.0012 18.0 0.0 1.9 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|219850799|ref|YP_002465231.1| - 0.023 13.5 1.8 2.9 6.6 0.2 2.1 2 0 0 2 2 2 0 PAXNEB protein TP_methylase PF00590.15 gi|219850800|ref|YP_002465232.1| - 7.8e-20 71.4 0.4 8.8e-20 71.3 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.8 gi|219850801|ref|YP_002465233.1| - 4.3e-31 106.4 0.0 2.4e-15 55.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) MannoseP_isomer PF01050.13 gi|219850802|ref|YP_002465234.1| - 1.4e-58 196.8 0.0 2.3e-58 196.0 0.0 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|219850802|ref|YP_002465234.1| - 6e-54 182.9 0.0 1.1e-53 182.0 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|219850802|ref|YP_002465234.1| - 5.9e-10 39.4 1.5 7.1e-09 35.9 0.0 2.6 2 1 0 2 2 2 1 MobA-like NTP transferase domain Cupin_2 PF07883.6 gi|219850802|ref|YP_002465234.1| - 1.3e-08 34.1 0.1 3.6e-08 32.7 0.1 1.8 1 0 0 1 1 1 1 Cupin domain E1-E2_ATPase PF00122.15 gi|219850803|ref|YP_002465235.1| - 4.8e-57 192.6 0.6 4.8e-57 192.6 0.4 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|219850803|ref|YP_002465235.1| - 1e-51 176.4 11.1 1.5e-50 172.6 6.4 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|219850803|ref|YP_002465235.1| - 8.3e-30 102.7 0.4 9e-14 51.3 0.1 2.5 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|219850803|ref|YP_002465235.1| - 1e-16 61.6 0.0 2.4e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|219850803|ref|YP_002465235.1| - 0.0031 17.1 0.1 0.0067 16.0 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CCSMST1 PF15013.1 gi|219850803|ref|YP_002465235.1| - 0.11 12.3 1.1 0.28 11.1 0.2 2.0 2 0 0 2 2 2 0 CCSMST1 family Med12-LCEWAV PF12145.3 gi|219850803|ref|YP_002465235.1| - 0.29 9.5 1.5 0.44 8.9 1.0 1.1 1 0 0 1 1 1 0 Eukaryotic Mediator 12 subunit domain DUF59 PF01883.14 gi|219850803|ref|YP_002465235.1| - 0.95 9.4 6.9 8.1 6.5 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function DUF59 Glycos_transf_2 PF00535.21 gi|219850805|ref|YP_002465237.1| - 0.025 14.2 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 TPR_11 PF13414.1 gi|219850808|ref|YP_002465240.1| - 2.1e-12 46.4 0.1 3.8e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 TPR repeat TPR_1 PF00515.23 gi|219850808|ref|YP_002465240.1| - 3.3e-12 45.4 0.0 2.7e-05 23.5 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219850808|ref|YP_002465240.1| - 3.4e-12 45.2 0.0 5.4e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219850808|ref|YP_002465240.1| - 2.8e-09 36.0 0.0 0.0036 16.9 0.0 2.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219850808|ref|YP_002465240.1| - 7.1e-09 36.1 0.1 1.3e-08 35.2 0.1 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219850808|ref|YP_002465240.1| - 1.4e-08 34.5 0.2 0.00038 20.8 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219850808|ref|YP_002465240.1| - 4.5e-07 29.7 0.2 0.0029 17.4 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219850808|ref|YP_002465240.1| - 4e-06 26.2 0.9 0.013 15.2 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219850808|ref|YP_002465240.1| - 1.2e-05 25.0 0.3 2.9e-05 23.8 0.1 1.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219850808|ref|YP_002465240.1| - 2.8e-05 24.3 0.2 5.1e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219850808|ref|YP_002465240.1| - 3.7e-05 23.5 0.1 0.0035 17.4 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat MIT PF04212.13 gi|219850808|ref|YP_002465240.1| - 0.0019 18.0 0.7 0.013 15.3 0.1 2.1 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain Apc3 PF12895.2 gi|219850808|ref|YP_002465240.1| - 0.0055 16.8 0.0 0.0073 16.4 0.0 1.2 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|219850808|ref|YP_002465240.1| - 0.017 15.0 0.7 0.19 11.6 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|219850808|ref|YP_002465240.1| - 0.13 10.9 0.0 0.17 10.6 0.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 DUF2276 PF10040.4 gi|219850809|ref|YP_002465241.1| - 1.6e-22 79.9 0.1 2.5e-22 79.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Beta_helix PF13229.1 gi|219850813|ref|YP_002465245.1| - 1.1e-11 44.7 28.9 3.6e-09 36.5 16.7 2.7 1 1 1 2 2 2 2 Right handed beta helix region Beta_helix PF13229.1 gi|219850814|ref|YP_002465246.1| - 3.2e-08 33.4 41.0 1.5e-06 28.0 23.0 2.9 2 1 1 3 3 3 2 Right handed beta helix region Hexapep PF00132.19 gi|219850815|ref|YP_002465247.1| - 5.5e-09 35.1 8.2 8.5e-08 31.3 1.1 3.9 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219850815|ref|YP_002465247.1| - 3.4e-08 32.9 2.8 2.3e-06 27.0 0.1 3.0 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase YHS PF04945.8 gi|219850816|ref|YP_002465248.1| - 8.9e-19 67.0 1.2 9.2e-19 67.0 0.8 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|219850816|ref|YP_002465248.1| - 0.00071 19.6 0.9 0.00085 19.4 0.6 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.3 gi|219850816|ref|YP_002465248.1| - 0.0019 18.6 0.3 0.0023 18.4 0.2 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase zf-FCS PF06467.9 gi|219850816|ref|YP_002465248.1| - 0.067 12.8 1.1 0.083 12.5 0.8 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif ACT PF01842.20 gi|219850817|ref|YP_002465249.1| - 7.5e-09 34.8 0.5 3.5e-08 32.7 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|219850817|ref|YP_002465249.1| - 1.5e-08 34.8 0.0 3.3e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|219850817|ref|YP_002465249.1| - 0.0014 18.2 0.0 0.0047 16.6 0.0 1.8 2 0 0 2 2 2 1 ACT domain Peripla_BP_4 PF13407.1 gi|219850817|ref|YP_002465249.1| - 0.0037 16.6 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain Transketolase_C PF02780.15 gi|219850817|ref|YP_002465249.1| - 0.0069 16.3 0.4 0.014 15.3 0.2 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Sua5_yciO_yrdC PF01300.13 gi|219850818|ref|YP_002465250.1| - 5.4e-46 156.0 0.0 6.2e-46 155.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.18 gi|219850819|ref|YP_002465251.1| - 0.00018 21.7 0.0 0.0014 18.8 0.0 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|219850819|ref|YP_002465251.1| - 0.072 12.6 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Cas_Cas4 PF01930.12 gi|219850820|ref|YP_002465252.1| - 0.00061 19.7 0.0 0.0009 19.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|219850820|ref|YP_002465252.1| - 0.00077 18.9 0.0 0.024 14.0 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|219850820|ref|YP_002465252.1| - 0.0011 18.2 0.1 0.0018 17.5 0.1 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) EndIII_4Fe-2S PF10576.4 gi|219850820|ref|YP_002465252.1| - 5.7 7.2 12.3 2.1 8.6 4.2 3.0 3 0 0 3 3 3 0 Iron-sulfur binding domain of endonuclease III TPP_enzyme_N PF02776.13 gi|219850821|ref|YP_002465253.1| - 3e-51 173.3 2.9 1.7e-47 161.0 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|219850821|ref|YP_002465253.1| - 6.7e-40 136.1 0.9 1.8e-39 134.7 0.6 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|219850821|ref|YP_002465253.1| - 6.3e-25 87.5 0.0 1.2e-24 86.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rubredoxin PF00301.15 gi|219850821|ref|YP_002465253.1| - 6.2e-21 73.9 2.1 1.1e-20 73.1 1.5 1.5 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|219850821|ref|YP_002465253.1| - 0.1 12.1 1.4 4 7.0 0.0 2.4 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger CW_binding_2 PF04122.7 gi|219850821|ref|YP_002465253.1| - 0.11 12.7 0.1 1.6 8.9 0.0 2.7 3 1 0 3 3 3 0 Putative cell wall binding repeat 2 E1_dh PF00676.15 gi|219850821|ref|YP_002465253.1| - 0.51 9.0 1.9 0.79 8.3 0.1 2.1 2 0 0 2 2 2 0 Dehydrogenase E1 component eIF-1a PF01176.14 gi|219850822|ref|YP_002465254.1| - 1.4e-20 72.4 2.2 1.9e-20 72.0 1.3 1.4 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 Acetyltransf_7 PF13508.1 gi|219850823|ref|YP_002465255.1| - 8.6e-12 45.0 0.0 1.4e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|219850823|ref|YP_002465255.1| - 1.7e-07 31.1 0.0 2.5e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|219850823|ref|YP_002465255.1| - 3.1e-05 24.0 0.0 4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|219850823|ref|YP_002465255.1| - 4.6e-05 23.2 0.1 0.00034 20.4 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|219850823|ref|YP_002465255.1| - 0.00055 19.6 0.1 0.0014 18.3 0.1 1.8 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|219850823|ref|YP_002465255.1| - 0.02 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Aldo_ket_red PF00248.16 gi|219850824|ref|YP_002465256.1| - 4e-27 94.7 0.0 3.6e-25 88.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PAS_9 PF13426.1 gi|219850825|ref|YP_002465257.1| - 8.7e-35 119.2 0.1 1.3e-10 41.5 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|219850825|ref|YP_002465257.1| - 3.3e-27 94.5 0.6 4.4e-12 45.7 0.0 4.6 4 0 0 4 4 4 3 PAS fold GAF_2 PF13185.1 gi|219850825|ref|YP_002465257.1| - 2.1e-25 89.9 0.0 5.2e-25 88.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|219850825|ref|YP_002465257.1| - 2.8e-21 75.6 0.0 1.2e-20 73.5 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|219850825|ref|YP_002465257.1| - 4.6e-21 73.8 1.1 3.1e-06 26.8 0.1 4.3 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.6 gi|219850825|ref|YP_002465257.1| - 5.2e-21 74.5 2.4 9.4e-05 22.4 0.0 4.8 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|219850825|ref|YP_002465257.1| - 1.1e-20 73.7 0.1 8e-07 29.0 0.0 5.1 5 0 0 5 5 5 4 PAS fold GAF_3 PF13492.1 gi|219850825|ref|YP_002465257.1| - 9.2e-08 32.2 0.0 2.1e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain ABC2_membrane_3 PF12698.2 gi|219850827|ref|YP_002465259.1| - 1e-21 77.3 5.5 1.7e-21 76.6 3.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219850827|ref|YP_002465259.1| - 4.3e-12 45.4 5.6 1.2e-11 44.0 3.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219850827|ref|YP_002465259.1| - 1.4e-09 37.4 8.2 8.8e-09 34.8 5.2 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|219850827|ref|YP_002465259.1| - 0.0045 16.2 10.2 0.0045 16.2 7.1 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|219850828|ref|YP_002465260.1| - 6.7e-15 54.9 18.5 6.7e-15 54.9 12.8 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|219850829|ref|YP_002465261.1| - 2.8e-30 105.4 0.0 4e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219850829|ref|YP_002465261.1| - 1.7e-13 51.1 0.2 1.1e-06 28.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|219850829|ref|YP_002465261.1| - 2.9e-05 24.4 0.4 3.5e-05 24.2 0.3 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|219850829|ref|YP_002465261.1| - 0.0031 16.7 0.2 1.9 7.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219850829|ref|YP_002465261.1| - 0.0082 15.6 0.2 0.016 14.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|219850829|ref|YP_002465261.1| - 0.021 14.9 0.6 0.26 11.4 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|219850829|ref|YP_002465261.1| - 0.025 13.6 0.0 0.26 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|219850829|ref|YP_002465261.1| - 0.048 14.1 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein GTP_EFTU PF00009.22 gi|219850829|ref|YP_002465261.1| - 0.048 13.0 0.1 0.29 10.5 0.1 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|219850829|ref|YP_002465261.1| - 0.055 12.6 0.0 0.098 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|219850829|ref|YP_002465261.1| - 0.08 12.5 0.3 0.15 11.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|219850829|ref|YP_002465261.1| - 0.11 11.8 0.0 0.29 10.5 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|219850829|ref|YP_002465261.1| - 0.12 12.3 0.1 0.23 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|219850829|ref|YP_002465261.1| - 0.13 12.0 0.1 0.24 11.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|219850829|ref|YP_002465261.1| - 0.14 10.5 0.1 0.68 8.3 0.0 1.8 1 1 1 2 2 2 0 AAA domain PIF1 PF05970.9 gi|219850829|ref|YP_002465261.1| - 0.18 10.6 0.2 0.71 8.7 0.1 1.8 2 0 0 2 2 2 0 PIF1-like helicase TrkA_N PF02254.13 gi|219850830|ref|YP_002465262.1| - 1.6e-16 60.2 0.1 7e-16 58.2 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|219850830|ref|YP_002465262.1| - 8.6e-14 51.4 0.1 1.6e-13 50.5 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|219850830|ref|YP_002465262.1| - 7.4e-10 38.3 0.0 2.1e-09 36.9 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain Saccharop_dh PF03435.13 gi|219850830|ref|YP_002465262.1| - 0.00032 19.7 0.0 0.00059 18.9 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|219850830|ref|YP_002465262.1| - 0.00093 19.3 0.0 0.0065 16.5 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|219850830|ref|YP_002465262.1| - 0.0088 16.4 0.0 0.13 12.6 0.0 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|219850830|ref|YP_002465262.1| - 0.015 15.1 0.0 0.029 14.2 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|219850830|ref|YP_002465262.1| - 0.029 14.6 0.0 0.094 12.9 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.16 gi|219850830|ref|YP_002465262.1| - 0.049 13.4 0.0 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 ThiF family ApbA PF02558.11 gi|219850830|ref|YP_002465262.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MAF_flag10 PF01973.13 gi|219850831|ref|YP_002465263.1| - 1.2e-33 115.9 0.0 1.4e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF115 Radical_SAM PF04055.16 gi|219850832|ref|YP_002465264.1| - 5.7e-16 59.1 0.0 8.8e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|219850832|ref|YP_002465264.1| - 0.00047 19.7 0.0 0.0063 16.1 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|219850832|ref|YP_002465264.1| - 0.0006 19.7 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|219850832|ref|YP_002465264.1| - 0.033 14.3 0.2 0.66 10.1 0.0 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix domain CBS PF00571.23 gi|219850833|ref|YP_002465265.1| - 2.9e-29 100.5 4.3 7e-17 60.9 0.5 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|219850833|ref|YP_002465265.1| - 4.5e-16 58.3 20.4 2.3e-13 49.5 5.1 2.8 2 1 1 3 3 3 2 Peptidase family M50 DUF1427 PF07235.6 gi|219850833|ref|YP_002465265.1| - 3.7 7.7 6.5 40 4.3 2.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) PRC PF05239.11 gi|219850834|ref|YP_002465266.1| - 4.5e-11 42.4 3.0 5e-11 42.3 2.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Thg1 PF04446.7 gi|219850835|ref|YP_002465267.1| - 3.2e-26 91.5 0.0 4.9e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|219850835|ref|YP_002465267.1| - 4.7e-23 81.1 0.0 8.4e-23 80.3 0.0 1.3 1 0 0 1 1 1 1 Thg1 C terminal domain tRNA-synt_1 PF00133.17 gi|219850836|ref|YP_002465268.1| - 9.1e-192 638.2 0.1 1.3e-191 637.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|219850836|ref|YP_002465268.1| - 1.2e-31 109.7 1.0 9.9e-12 44.1 0.1 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|219850836|ref|YP_002465268.1| - 6.6e-30 103.8 0.0 1.2e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|219850836|ref|YP_002465268.1| - 8e-08 31.7 0.0 1.9e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|219850836|ref|YP_002465268.1| - 0.00013 20.7 0.0 0.00051 18.8 0.0 1.9 2 1 0 2 2 2 1 tRNA synthetases class I (K) Big_3_2 PF12245.3 gi|219850836|ref|YP_002465268.1| - 0.066 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Lysine_decarbox PF03641.9 gi|219850837|ref|YP_002465269.1| - 2e-08 34.1 0.1 3.5e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|219850837|ref|YP_002465269.1| - 0.00025 20.0 5.6 0.00056 18.8 2.1 2.0 2 0 0 2 2 2 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|219850837|ref|YP_002465269.1| - 0.001 18.9 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DAGK_cat PF00781.19 gi|219850837|ref|YP_002465269.1| - 0.87 9.0 7.3 3.2 7.1 2.2 2.1 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain PBP_like PF12727.2 gi|219850838|ref|YP_002465270.1| - 1e-53 181.1 0.0 2.2e-53 180.1 0.0 1.6 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|219850838|ref|YP_002465270.1| - 6.1e-33 113.4 1.4 9.3e-32 109.6 1.0 2.3 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|219850838|ref|YP_002465270.1| - 1.1e-24 86.4 0.1 2.1e-24 85.5 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|219850838|ref|YP_002465270.1| - 1.2e-09 38.0 0.1 4.6e-09 36.1 0.1 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.15 gi|219850838|ref|YP_002465270.1| - 9.4e-06 24.8 0.1 0.00013 21.1 0.1 2.9 2 1 1 3 3 3 2 LysR substrate binding domain Phosphonate-bd PF12974.2 gi|219850838|ref|YP_002465270.1| - 0.0031 16.9 0.0 0.0068 15.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MoeA_N PF03453.12 gi|219850839|ref|YP_002465271.1| - 4.3e-50 169.2 1.3 6.5e-50 168.6 0.9 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|219850839|ref|YP_002465271.1| - 1.6e-22 79.4 0.3 3.3e-22 78.4 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|219850839|ref|YP_002465271.1| - 1.1e-20 73.3 0.1 5e-19 68.0 0.0 3.4 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) DUF3331 PF11811.3 gi|219850839|ref|YP_002465271.1| - 0.024 14.2 0.0 0.049 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3331) PAS_9 PF13426.1 gi|219850841|ref|YP_002465273.1| - 1.6e-20 73.4 0.0 8.9e-11 42.0 0.0 3.1 4 0 0 4 4 4 2 PAS domain PAS_8 PF13188.1 gi|219850841|ref|YP_002465273.1| - 4.8e-12 45.2 0.3 6.6e-06 25.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|219850841|ref|YP_002465273.1| - 9.9e-12 44.5 0.0 2.2e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|219850841|ref|YP_002465273.1| - 1.8e-09 37.3 0.0 0.00083 19.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219850841|ref|YP_002465273.1| - 0.00019 21.4 0.1 0.18 11.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|219850841|ref|YP_002465273.1| - 0.0055 16.7 0.0 0.039 14.0 0.0 2.3 2 0 0 2 2 2 1 PAS fold SPOB_a PF14689.1 gi|219850841|ref|YP_002465273.1| - 0.03 13.8 0.1 3 7.4 0.1 2.4 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain tRNA_deacylase PF04414.7 gi|219850842|ref|YP_002465274.1| - 4.7e-63 212.1 0.0 6.4e-63 211.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DNA_mis_repair PF01119.14 gi|219850842|ref|YP_002465274.1| - 0.18 11.2 0.0 0.36 10.2 0.0 1.5 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain Tubulin PF00091.20 gi|219850843|ref|YP_002465275.1| - 3.3e-38 131.6 0.2 8.1e-38 130.4 0.1 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|219850843|ref|YP_002465275.1| - 4e-35 119.7 0.9 1.1e-34 118.3 0.6 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|219850843|ref|YP_002465275.1| - 0.0098 15.7 0.2 0.052 13.3 0.1 2.2 2 0 0 2 2 2 1 ThiF family SecE PF00584.15 gi|219850844|ref|YP_002465276.1| - 0.00024 20.6 0.2 0.00028 20.3 0.1 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.8 gi|219850845|ref|YP_002465277.1| - 4e-22 77.7 0.1 6.4e-22 77.1 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section NusG PF02357.14 gi|219850845|ref|YP_002465277.1| - 2.2e-05 24.5 0.3 0.00011 22.3 0.1 2.2 2 1 0 2 2 2 1 Transcription termination factor nusG KOW PF00467.24 gi|219850845|ref|YP_002465277.1| - 0.00012 21.6 2.4 0.00054 19.5 0.1 2.4 2 0 0 2 2 2 1 KOW motif FTZ PF03867.9 gi|219850845|ref|YP_002465277.1| - 0.12 11.6 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Fushi tarazu (FTZ), N-terminal region Ribosomal_L11_N PF03946.9 gi|219850846|ref|YP_002465278.1| - 8.2e-24 82.8 2.0 8.2e-24 82.8 1.4 2.0 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|219850846|ref|YP_002465278.1| - 1.6e-20 72.9 0.4 2.6e-20 72.3 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.16 gi|219850847|ref|YP_002465279.1| - 3.8e-48 163.7 0.0 4.5e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|219850848|ref|YP_002465280.1| - 2.6e-24 85.0 0.0 5e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|219850849|ref|YP_002465281.1| - 1e-18 67.5 19.4 1.2e-18 67.2 13.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|219850849|ref|YP_002465281.1| - 4.5 7.2 11.3 20 5.1 0.1 2.3 1 1 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3138 PF11336.3 gi|219850849|ref|YP_002465281.1| - 5.7 5.0 6.0 6.5 4.8 4.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF4013 PF13197.1 gi|219850850|ref|YP_002465282.1| - 2.7 7.2 56.2 0.068 12.5 15.3 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) Ion_trans PF00520.26 gi|219850851|ref|YP_002465283.1| - 1.2e-20 73.5 8.5 1.2e-20 73.5 5.9 1.5 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|219850851|ref|YP_002465283.1| - 2.8e-16 59.0 2.5 2.8e-16 59.0 1.7 2.3 2 1 1 3 3 3 1 Ion channel DUF4395 PF14340.1 gi|219850851|ref|YP_002465283.1| - 0.063 13.3 0.4 0.063 13.3 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) zinc_ribbon_2 PF13240.1 gi|219850851|ref|YP_002465283.1| - 0.065 12.7 0.3 0.065 12.7 0.2 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219850851|ref|YP_002465283.1| - 0.092 11.9 0.4 0.19 11.0 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain OppC_N PF12911.2 gi|219850851|ref|YP_002465283.1| - 3.1 7.2 5.2 39 3.7 0.0 2.8 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C PAS PF00989.19 gi|219850854|ref|YP_002465286.1| - 1.6e-23 82.6 0.3 1.1e-10 41.3 0.0 2.9 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|219850854|ref|YP_002465286.1| - 2.9e-21 75.5 0.0 7.8e-21 74.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219850854|ref|YP_002465286.1| - 9.6e-21 74.1 0.3 1.4e-08 35.0 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|219850854|ref|YP_002465286.1| - 1.3e-19 70.2 0.0 5.4e-16 58.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|219850854|ref|YP_002465286.1| - 1.5e-12 47.4 0.1 4.7e-10 39.4 0.0 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|219850854|ref|YP_002465286.1| - 1.8e-11 43.4 0.0 1.6e-05 24.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|219850854|ref|YP_002465286.1| - 1.8e-09 37.2 0.0 4.5e-09 36.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|219850854|ref|YP_002465286.1| - 6.1e-06 26.1 0.0 0.00012 22.0 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|219850854|ref|YP_002465286.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PRAI PF00697.17 gi|219850855|ref|YP_002465287.1| - 4.9e-30 104.5 0.0 1.3e-29 103.2 0.0 1.6 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PEP_mutase PF13714.1 gi|219850855|ref|YP_002465287.1| - 0.062 12.5 0.5 0.44 9.7 0.1 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase NanE PF04131.9 gi|219850855|ref|YP_002465287.1| - 0.064 12.2 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase PTE PF02126.13 gi|219850855|ref|YP_002465287.1| - 0.11 11.4 0.1 0.19 10.7 0.0 1.4 2 0 0 2 2 2 0 Phosphotriesterase family Glycos_transf_1 PF00534.15 gi|219850856|ref|YP_002465288.1| - 5.7e-24 84.4 0.0 1.1e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219850856|ref|YP_002465288.1| - 2e-14 53.8 0.0 3.5e-13 49.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219850856|ref|YP_002465288.1| - 1.2e-10 41.8 7.4 2e-09 37.8 0.1 2.3 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|219850856|ref|YP_002465288.1| - 6.4e-07 29.5 0.1 1.3e-06 28.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_synt PF01943.12 gi|219850857|ref|YP_002465289.1| - 3e-42 144.7 19.0 3e-42 144.7 13.2 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|219850857|ref|YP_002465289.1| - 2.1e-21 76.5 20.4 2.1e-21 76.5 14.1 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|219850857|ref|YP_002465289.1| - 4.1e-10 39.6 16.6 4.1e-10 39.6 11.5 3.6 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain SecE PF00584.15 gi|219850857|ref|YP_002465289.1| - 0.037 13.5 0.0 0.037 13.5 0.0 2.9 4 0 0 4 4 4 0 SecE/Sec61-gamma subunits of protein translocation complex DUF3789 PF12664.2 gi|219850857|ref|YP_002465289.1| - 0.065 12.5 2.7 0.25 10.7 1.9 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3789) Neurensin PF14927.1 gi|219850857|ref|YP_002465289.1| - 2 7.7 8.2 0.62 9.4 2.7 2.4 1 1 1 2 2 2 0 Neurensin DUF4430 PF14478.1 gi|219850860|ref|YP_002465292.1| - 3.8e-13 49.2 4.7 8.8e-06 25.6 0.0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4430) Oxidored_molyb PF00174.14 gi|219850860|ref|YP_002465292.1| - 5.2e-07 29.2 0.0 0.00051 19.5 0.0 2.3 2 0 0 2 2 2 2 Oxidoreductase molybdopterin binding domain Sua5_yciO_yrdC PF01300.13 gi|219850861|ref|YP_002465293.1| - 4e-35 120.6 0.0 6.9e-35 119.8 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|219850861|ref|YP_002465293.1| - 3.5e-29 99.9 12.6 4e-15 54.9 2.1 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|219850861|ref|YP_002465293.1| - 5.5e-18 64.8 0.0 9.7e-18 64.0 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|219850861|ref|YP_002465293.1| - 3.2e-10 39.9 0.0 3.2e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 Glycoprotease family DZR PF12773.2 gi|219850861|ref|YP_002465293.1| - 0.012 15.4 3.3 0.6 9.9 0.5 2.5 2 0 0 2 2 2 0 Double zinc ribbon CmcH_NodU PF02543.10 gi|219850861|ref|YP_002465293.1| - 0.16 11.0 0.0 0.41 9.7 0.0 1.6 2 0 0 2 2 2 0 Carbamoyltransferase FYVE PF01363.16 gi|219850861|ref|YP_002465293.1| - 0.49 10.3 2.7 0.83 9.5 0.0 2.4 2 1 1 3 3 3 0 FYVE zinc finger PhnA_Zn_Ribbon PF08274.7 gi|219850861|ref|YP_002465293.1| - 0.94 9.3 4.6 2.6 7.9 0.5 2.6 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|219850861|ref|YP_002465293.1| - 0.99 9.4 3.6 1.1 9.2 1.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain ArsR PF09824.4 gi|219850862|ref|YP_002465294.1| - 2.6e-60 202.3 0.0 2.9e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Glyco_hydro_26 PF02156.10 gi|219850862|ref|YP_002465294.1| - 0.0051 16.3 0.0 0.006 16.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 FeoC PF09012.5 gi|219850862|ref|YP_002465294.1| - 0.0074 15.9 0.0 0.027 14.1 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|219850862|ref|YP_002465294.1| - 0.01 15.3 0.1 0.036 13.6 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|219850862|ref|YP_002465294.1| - 0.02 14.5 0.1 0.1 12.2 0.0 2.2 2 0 0 2 2 2 0 HTH domain DUF2042 PF09743.4 gi|219850862|ref|YP_002465294.1| - 0.047 13.0 0.2 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) MRP-L20 PF12824.2 gi|219850862|ref|YP_002465294.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 HTH_24 PF13412.1 gi|219850863|ref|YP_002465295.1| - 1.9e-08 33.5 0.0 5.9e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|219850863|ref|YP_002465295.1| - 2.1e-08 33.6 0.1 5.1e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|219850863|ref|YP_002465295.1| - 9.1e-08 31.6 0.0 5e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|219850863|ref|YP_002465295.1| - 5.6e-07 29.8 0.0 1.1e-05 25.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|219850863|ref|YP_002465295.1| - 1.7e-05 24.5 0.0 0.00022 20.9 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|219850863|ref|YP_002465295.1| - 0.0002 21.2 0.1 0.00089 19.1 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain EAP30 PF04157.11 gi|219850863|ref|YP_002465295.1| - 0.00021 20.5 0.1 0.0018 17.4 0.0 2.3 2 1 0 2 2 2 1 EAP30/Vps36 family HTH_23 PF13384.1 gi|219850863|ref|YP_002465295.1| - 0.00026 20.5 0.0 0.00055 19.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|219850863|ref|YP_002465295.1| - 0.00031 20.3 0.0 0.00074 19.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|219850863|ref|YP_002465295.1| - 0.0009 18.8 0.1 0.0026 17.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|219850863|ref|YP_002465295.1| - 0.0028 17.3 0.2 0.026 14.2 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.3 gi|219850863|ref|YP_002465295.1| - 0.0032 17.2 0.1 0.0076 16.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_45 PF14947.1 gi|219850863|ref|YP_002465295.1| - 0.0033 17.2 0.0 0.0065 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|219850863|ref|YP_002465295.1| - 0.004 16.7 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_17 PF12728.2 gi|219850863|ref|YP_002465295.1| - 0.0041 17.3 0.0 0.98 9.7 0.0 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain GntR PF00392.16 gi|219850863|ref|YP_002465295.1| - 0.0047 16.3 0.1 0.024 14.0 0.0 2.2 1 1 1 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|219850863|ref|YP_002465295.1| - 0.0053 16.5 0.5 0.013 15.2 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|219850863|ref|YP_002465295.1| - 0.0083 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF977 PF06163.6 gi|219850863|ref|YP_002465295.1| - 0.0086 15.8 0.2 0.014 15.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_3 PF01381.17 gi|219850863|ref|YP_002465295.1| - 0.0091 15.8 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_29 PF13551.1 gi|219850863|ref|YP_002465295.1| - 0.0096 16.0 0.2 0.021 14.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix DUF4423 PF14394.1 gi|219850863|ref|YP_002465295.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.7 gi|219850863|ref|YP_002465295.1| - 0.015 14.8 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Mnd1 PF03962.10 gi|219850863|ref|YP_002465295.1| - 0.024 14.3 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family HTH_28 PF13518.1 gi|219850863|ref|YP_002465295.1| - 0.027 14.4 0.0 0.078 12.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|219850863|ref|YP_002465295.1| - 0.051 13.3 0.0 0.15 11.8 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family KorB PF08535.5 gi|219850863|ref|YP_002465295.1| - 0.13 12.4 0.0 0.37 10.9 0.0 1.9 1 1 0 1 1 1 0 KorB domain PCI PF01399.22 gi|219850863|ref|YP_002465295.1| - 0.2 12.0 1.6 3 8.1 0.0 2.8 3 0 0 3 3 3 0 PCI domain DEAD PF00270.24 gi|219850864|ref|YP_002465296.1| - 4.3e-22 78.4 0.0 8.8e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|219850864|ref|YP_002465296.1| - 4.1e-13 48.9 0.0 1.2e-12 47.5 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|219850864|ref|YP_002465296.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Aconitase PF00330.15 gi|219850865|ref|YP_002465297.1| - 6.2e-79 265.6 2.3 1.2e-52 178.9 0.4 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|219850866|ref|YP_002465298.1| - 7.5e-21 74.6 0.0 1.2e-20 73.9 0.0 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|219850866|ref|YP_002465298.1| - 0.096 12.0 0.2 0.33 10.3 0.1 1.9 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|219850867|ref|YP_002465299.1| - 5.9e-91 304.9 0.0 6.9e-91 304.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TetR_N PF00440.18 gi|219850869|ref|YP_002465301.1| - 2.3e-18 65.5 0.0 4.5e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.1 gi|219850869|ref|YP_002465301.1| - 0.0024 17.6 0.0 0.0044 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_22 PF13309.1 gi|219850869|ref|YP_002465301.1| - 0.005 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain TetR_C_6 PF13977.1 gi|219850869|ref|YP_002465301.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial transcriptional repressor HTH_17 PF12728.2 gi|219850869|ref|YP_002465301.1| - 0.013 15.6 0.1 0.07 13.3 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|219850869|ref|YP_002465301.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|219850869|ref|YP_002465301.1| - 0.027 14.0 0.0 0.069 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.17 gi|219850869|ref|YP_002465301.1| - 0.044 13.6 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_11 PF08279.7 gi|219850869|ref|YP_002465301.1| - 0.052 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF4315 PF14193.1 gi|219850869|ref|YP_002465301.1| - 0.053 13.4 0.3 0.22 11.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) MarR_2 PF12802.2 gi|219850869|ref|YP_002465301.1| - 0.074 12.7 0.0 0.28 10.8 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|219850869|ref|YP_002465301.1| - 0.084 12.2 0.0 0.26 10.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|219850869|ref|YP_002465301.1| - 0.11 12.0 0.0 0.61 9.7 0.0 2.2 3 0 0 3 3 3 0 HTH DNA binding domain MarR PF01047.17 gi|219850869|ref|YP_002465301.1| - 0.12 12.1 0.0 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 MarR family MerR PF00376.18 gi|219850869|ref|YP_002465301.1| - 0.14 11.7 0.1 8.8 5.9 0.0 2.3 2 0 0 2 2 2 0 MerR family regulatory protein Amidohydro_3 PF07969.6 gi|219850870|ref|YP_002465302.1| - 1.4e-69 235.3 0.0 1.6e-69 235.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|219850870|ref|YP_002465302.1| - 3.3e-08 33.2 0.0 1.4e-07 31.2 0.0 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|219850870|ref|YP_002465302.1| - 3.4e-05 24.0 0.5 0.042 13.8 0.0 2.8 3 0 0 3 3 3 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|219850870|ref|YP_002465302.1| - 0.0023 17.6 0.3 0.045 13.4 0.1 2.6 2 1 0 2 2 2 1 Amidohydrolase family ICMT PF04140.9 gi|219850871|ref|YP_002465303.1| - 3.3e-15 56.0 3.9 4.8e-15 55.5 0.4 2.2 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.8 gi|219850871|ref|YP_002465303.1| - 7.8e-13 48.4 0.6 7.8e-13 48.4 0.4 2.3 2 0 0 2 2 2 1 Phospholipid methyltransferase Steroid_dh PF02544.11 gi|219850871|ref|YP_002465303.1| - 2.9e-05 23.8 0.8 0.0015 18.3 0.2 2.1 1 1 1 2 2 2 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1295 PF06966.7 gi|219850871|ref|YP_002465303.1| - 0.00038 19.8 3.1 0.036 13.3 0.3 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.12 gi|219850871|ref|YP_002465303.1| - 0.00066 18.3 0.0 0.0014 17.2 0.0 1.5 1 1 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family PRA1 PF03208.14 gi|219850871|ref|YP_002465303.1| - 0.022 14.0 7.1 0.076 12.3 0.4 2.2 1 1 1 2 2 2 0 PRA1 family protein PBP PF01161.15 gi|219850872|ref|YP_002465304.1| - 6.1e-37 126.6 0.0 7e-37 126.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein FrhB_FdhB_C PF04432.8 gi|219850873|ref|YP_002465305.1| - 7.3e-40 136.0 0.5 7.3e-40 136.0 0.4 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|219850873|ref|YP_002465305.1| - 1e-22 79.7 0.0 2e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|219850873|ref|YP_002465305.1| - 5.2e-09 35.9 15.5 5.1e-08 32.8 10.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219850873|ref|YP_002465305.1| - 1e-06 28.0 19.1 0.00025 20.4 2.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219850873|ref|YP_002465305.1| - 1.4e-05 25.4 13.2 0.0012 19.2 0.8 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219850873|ref|YP_002465305.1| - 0.00018 21.8 13.9 0.00018 21.8 9.6 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219850873|ref|YP_002465305.1| - 0.00035 20.8 20.1 0.00042 20.6 11.7 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219850873|ref|YP_002465305.1| - 0.00064 19.4 21.9 0.0056 16.4 2.3 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219850873|ref|YP_002465305.1| - 0.0014 18.4 3.5 0.0014 18.4 2.4 3.4 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219850873|ref|YP_002465305.1| - 0.0027 17.9 25.3 0.011 15.9 13.4 3.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219850873|ref|YP_002465305.1| - 0.0038 17.4 3.9 0.0038 17.4 2.7 3.8 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219850873|ref|YP_002465305.1| - 0.0039 17.0 11.9 0.012 15.4 1.8 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219850873|ref|YP_002465305.1| - 0.66 10.7 18.5 0.64 10.8 0.3 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|219850873|ref|YP_002465305.1| - 1.4 8.7 24.8 1.8 8.5 14.3 3.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219850873|ref|YP_002465305.1| - 5.4 7.6 12.7 2.8 8.5 0.6 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|219850874|ref|YP_002465306.1| - 1.4e-95 320.5 0.0 2e-95 320.1 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|219850874|ref|YP_002465306.1| - 2.3e-31 107.8 0.0 4.3e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|219850874|ref|YP_002465306.1| - 6.1e-23 80.3 4.0 1.2e-22 79.3 2.7 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FmdE PF02663.9 gi|219850875|ref|YP_002465307.1| - 3.6e-32 110.9 0.0 4.9e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|219850875|ref|YP_002465307.1| - 0.0016 18.1 2.1 0.0085 15.8 1.5 2.3 1 1 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF3494 PF11999.3 gi|219850876|ref|YP_002465308.1| - 1.6e-65 220.5 18.4 1.6e-65 220.5 12.7 4.1 5 1 1 6 6 6 1 Protein of unknown function (DUF3494) NosD PF05048.8 gi|219850876|ref|YP_002465308.1| - 8.7e-36 123.2 37.1 5.8e-25 87.8 10.1 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219850876|ref|YP_002465308.1| - 6.5e-11 42.2 52.7 4.9e-10 39.3 16.1 3.7 4 0 0 4 4 4 2 Right handed beta helix region MobB PF03205.9 gi|219850877|ref|YP_002465309.1| - 9.6e-15 54.5 0.3 1.2e-14 54.1 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|219850877|ref|YP_002465309.1| - 0.0072 15.7 0.5 0.018 14.4 0.3 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.22 gi|219850877|ref|YP_002465309.1| - 0.016 15.4 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 ABC transporter PRK PF00485.13 gi|219850877|ref|YP_002465309.1| - 0.033 13.7 0.1 0.067 12.7 0.1 1.5 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.4 gi|219850877|ref|YP_002465309.1| - 0.042 13.3 0.2 0.074 12.5 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|219850877|ref|YP_002465309.1| - 0.11 13.3 0.0 0.22 12.3 0.0 1.6 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|219850877|ref|YP_002465309.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|219850877|ref|YP_002465309.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Nitroreductase PF00881.19 gi|219850878|ref|YP_002465310.1| - 1e-25 90.4 0.0 1.2e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family GXGXG PF01493.14 gi|219850879|ref|YP_002465311.1| - 2.1e-34 118.3 36.8 1.5e-29 102.4 18.4 2.0 1 1 1 2 2 2 2 GXGXG motif NAGLU_N PF12971.2 gi|219850879|ref|YP_002465311.1| - 0.057 13.0 0.1 19 4.9 0.0 3.0 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Amidohydro_3 PF07969.6 gi|219850880|ref|YP_002465312.1| - 6.7e-56 190.2 0.1 7.9e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|219850880|ref|YP_002465312.1| - 1.3e-09 37.7 0.1 8.2e-09 35.1 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|219850880|ref|YP_002465312.1| - 1.4e-06 28.5 0.2 0.0072 16.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|219850880|ref|YP_002465312.1| - 0.042 13.5 0.2 1.5 8.4 0.0 2.8 2 1 0 2 2 2 0 Amidohydrolase family Molybdopterin PF00384.17 gi|219850881|ref|YP_002465313.1| - 2.8e-12 46.0 0.0 3.1e-10 39.3 0.0 2.3 2 1 0 2 2 2 2 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|219850881|ref|YP_002465313.1| - 0.076 12.7 0.1 1.2 8.9 0.0 2.7 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.16 gi|219850882|ref|YP_002465314.1| - 1.6e-11 43.9 0.1 2e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MoeA_N PF03453.12 gi|219850883|ref|YP_002465315.1| - 1.2e-31 109.3 0.0 1.2e-30 106.0 0.0 2.3 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|219850883|ref|YP_002465315.1| - 9.8e-29 99.6 0.1 1.7e-28 98.8 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|219850883|ref|YP_002465315.1| - 5.7e-20 71.0 0.0 2.1e-17 62.6 0.0 2.2 2 0 0 2 2 2 2 PBP superfamily domain MoeA_C PF03454.10 gi|219850883|ref|YP_002465315.1| - 3.8e-06 26.7 0.1 7.8e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NIR_SIR PF01077.17 gi|219850884|ref|YP_002465316.1| - 1.6e-21 76.3 0.1 2.1e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|219850884|ref|YP_002465316.1| - 2.3e-18 65.5 0.0 3.8e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|219850884|ref|YP_002465316.1| - 3.2e-10 39.1 23.0 2e-06 27.1 1.3 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219850884|ref|YP_002465316.1| - 2e-08 34.4 13.6 4.2e-08 33.4 6.9 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219850884|ref|YP_002465316.1| - 2.6e-06 27.1 10.6 2.6e-06 27.1 7.4 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219850884|ref|YP_002465316.1| - 8.8e-06 26.1 13.4 0.0066 16.9 0.1 3.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219850884|ref|YP_002465316.1| - 1.5e-05 24.9 11.6 0.0023 17.9 0.0 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219850884|ref|YP_002465316.1| - 2.1e-05 24.6 16.8 0.012 15.9 3.5 2.9 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219850884|ref|YP_002465316.1| - 2.5e-05 23.9 10.7 0.0015 18.3 1.2 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219850884|ref|YP_002465316.1| - 6e-05 22.8 10.7 6e-05 22.8 7.4 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|219850884|ref|YP_002465316.1| - 0.00013 21.7 3.4 0.00013 21.7 2.4 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219850884|ref|YP_002465316.1| - 0.00082 19.6 10.6 0.17 12.2 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219850884|ref|YP_002465316.1| - 0.0015 19.1 14.3 0.43 11.3 1.1 3.4 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|219850884|ref|YP_002465316.1| - 0.0081 16.0 1.9 0.0081 16.0 1.3 4.2 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219850884|ref|YP_002465316.1| - 0.16 12.4 11.1 1.2 9.5 0.4 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219850884|ref|YP_002465316.1| - 2.7 8.4 18.2 2.3 8.7 1.3 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219850884|ref|YP_002465316.1| - 5.6 7.5 24.4 0.08 13.3 2.2 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain DUF772 PF05598.6 gi|219850885|ref|YP_002465317.1| - 0.089 12.7 0.1 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Transposase domain (DUF772) TOBE PF03459.12 gi|219850886|ref|YP_002465318.1| - 7.2e-15 54.8 0.1 8.2e-15 54.6 0.1 1.1 1 0 0 1 1 1 1 TOBE domain SBP_bac_11 PF13531.1 gi|219850887|ref|YP_002465319.1| - 2.9e-45 154.7 1.9 2.9e-45 154.7 1.3 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|219850887|ref|YP_002465319.1| - 4.4e-12 46.3 2.6 2e-11 44.2 1.7 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|219850887|ref|YP_002465319.1| - 0.0036 16.2 0.1 0.0036 16.2 0.1 1.7 2 1 0 2 2 2 1 PBP superfamily domain SBP_bac_6 PF13343.1 gi|219850887|ref|YP_002465319.1| - 0.05 12.9 0.1 0.8 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|219850888|ref|YP_002465320.1| - 1.1e-13 51.1 16.1 1.1e-13 51.1 11.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|219850889|ref|YP_002465321.1| - 3.1e-33 114.9 0.0 4.4e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|219850889|ref|YP_002465321.1| - 3.8e-11 42.6 0.0 2.1e-10 40.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|219850889|ref|YP_002465321.1| - 1e-10 42.0 0.2 0.00015 21.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|219850889|ref|YP_002465321.1| - 1.3e-05 25.6 0.1 1.6e-05 25.2 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219850889|ref|YP_002465321.1| - 0.00018 20.9 0.0 0.00035 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|219850889|ref|YP_002465321.1| - 0.01 14.9 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|219850889|ref|YP_002465321.1| - 0.015 15.2 0.1 0.089 12.7 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|219850889|ref|YP_002465321.1| - 0.021 14.7 0.1 0.044 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|219850889|ref|YP_002465321.1| - 0.024 14.8 0.0 0.21 11.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|219850889|ref|YP_002465321.1| - 0.048 13.4 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AhpC-TSA PF00578.16 gi|219850890|ref|YP_002465322.1| - 8.9e-28 96.4 0.0 1.1e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|219850890|ref|YP_002465322.1| - 4.5e-17 61.9 0.0 5.2e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin Trp_syntA PF00290.15 gi|219850891|ref|YP_002465323.1| - 1.2e-89 299.2 0.0 1.4e-89 299.0 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|219850891|ref|YP_002465323.1| - 9.7e-06 25.0 0.1 3.8e-05 23.0 0.0 1.9 1 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|219850891|ref|YP_002465323.1| - 0.0038 16.3 0.1 0.011 14.8 0.0 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Pterin_bind PF00809.17 gi|219850891|ref|YP_002465323.1| - 0.0095 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme PcrB PF01884.12 gi|219850891|ref|YP_002465323.1| - 0.01 15.1 0.6 0.044 13.0 0.1 2.2 3 0 0 3 3 3 0 PcrB family PALP PF00291.20 gi|219850892|ref|YP_002465324.1| - 1.6e-40 139.2 0.3 2e-40 138.9 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|219850893|ref|YP_002465325.1| - 2.7e-63 213.3 0.0 3.1e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|219850893|ref|YP_002465325.1| - 0.073 12.5 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.9 gi|219850893|ref|YP_002465325.1| - 0.085 11.9 0.2 0.58 9.1 0.0 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Glycos_transf_3 PF00591.16 gi|219850894|ref|YP_002465326.1| - 2.3e-91 305.6 3.0 3.4e-91 305.1 2.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|219850894|ref|YP_002465326.1| - 9.7e-21 73.1 3.5 9.7e-21 73.1 2.4 1.7 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Ribosomal_S27 PF01599.14 gi|219850894|ref|YP_002465326.1| - 0.17 11.7 0.2 0.38 10.5 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27a GATase PF00117.23 gi|219850895|ref|YP_002465327.1| - 2.1e-52 177.3 0.0 2.4e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|219850895|ref|YP_002465327.1| - 1.1e-06 28.2 0.0 6.8e-06 25.6 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 NAD_binding_10 PF13460.1 gi|219850895|ref|YP_002465327.1| - 0.095 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding HCV_NS4a PF01006.15 gi|219850895|ref|YP_002465327.1| - 0.12 11.8 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Chorismate_bind PF00425.13 gi|219850896|ref|YP_002465328.1| - 1.9e-95 319.0 0.0 2.7e-95 318.5 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|219850896|ref|YP_002465328.1| - 8.9e-18 64.6 0.0 1.2e-15 57.7 0.0 2.5 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region PAS_9 PF13426.1 gi|219850897|ref|YP_002465329.1| - 2.2e-27 95.4 0.0 1.1e-08 35.3 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219850897|ref|YP_002465329.1| - 3.5e-27 94.4 0.0 2.5e-10 40.1 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|219850897|ref|YP_002465329.1| - 2.6e-26 91.8 0.7 2.1e-08 34.1 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219850897|ref|YP_002465329.1| - 2.2e-17 62.2 1.2 1.7e-05 24.5 0.1 4.2 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.6 gi|219850897|ref|YP_002465329.1| - 4e-08 33.2 0.0 9.6e-06 25.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.2 gi|219850897|ref|YP_002465329.1| - 8.1e-08 32.2 1.7 0.3 11.1 0.0 4.7 4 2 0 4 4 4 2 PAS fold HTH_23 PF13384.1 gi|219850897|ref|YP_002465329.1| - 4.7e-05 22.8 0.1 0.00036 20.0 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.1 gi|219850897|ref|YP_002465329.1| - 0.00015 21.2 0.1 0.00048 19.6 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|219850897|ref|YP_002465329.1| - 0.00036 20.0 0.1 0.0042 16.6 0.0 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain KorB PF08535.5 gi|219850897|ref|YP_002465329.1| - 0.0021 18.1 0.0 0.0063 16.6 0.0 1.8 1 0 0 1 1 1 1 KorB domain TBPIP PF07106.8 gi|219850897|ref|YP_002465329.1| - 0.0066 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_5 PF01022.15 gi|219850897|ref|YP_002465329.1| - 0.011 15.4 0.0 0.025 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|219850897|ref|YP_002465329.1| - 0.014 15.1 0.1 0.044 13.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.14 gi|219850897|ref|YP_002465329.1| - 0.019 14.2 0.1 0.063 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|219850897|ref|YP_002465329.1| - 0.04 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 MarR family DNA_binding_1 PF01035.15 gi|219850897|ref|YP_002465329.1| - 0.057 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF2518 PF10726.4 gi|219850897|ref|YP_002465329.1| - 0.11 12.0 0.2 0.46 10.0 0.1 1.9 2 0 0 2 2 2 0 Protein of function (DUF2518) RPA_C PF08784.6 gi|219850897|ref|YP_002465329.1| - 0.13 12.6 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal CARDB PF07705.6 gi|219850898|ref|YP_002465330.1| - 2.9e-09 36.9 7.6 0.0017 18.4 0.5 3.4 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|219850898|ref|YP_002465330.1| - 3.5e-08 33.3 7.2 0.013 15.5 0.0 4.5 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase MMPL PF03176.10 gi|219850899|ref|YP_002465331.1| - 7.7e-46 156.3 23.5 2.4e-28 98.8 5.6 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|219850899|ref|YP_002465331.1| - 8e-17 61.1 13.8 1.5e-10 40.7 3.9 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|219850899|ref|YP_002465331.1| - 1.4e-11 43.9 26.1 1.4e-09 37.4 7.0 2.6 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.13 gi|219850899|ref|YP_002465331.1| - 1.4e-07 29.9 19.4 0.00036 18.6 2.9 2.2 2 0 0 2 2 2 2 Patched family DUF4191 PF13829.1 gi|219850899|ref|YP_002465331.1| - 0.039 13.0 8.1 0.23 10.5 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) DUF904 PF06005.7 gi|219850900|ref|YP_002465332.1| - 0.0069 16.6 0.3 0.0099 16.1 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF904) Ribosomal_S15 PF00312.17 gi|219850900|ref|YP_002465332.1| - 0.015 15.0 0.1 0.02 14.6 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S15 DUF4279 PF14106.1 gi|219850900|ref|YP_002465332.1| - 0.041 13.7 0.1 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4279) CoA_transf_3 PF02515.12 gi|219850901|ref|YP_002465333.1| - 0.011 15.0 0.6 0.015 14.5 0.4 1.3 1 0 0 1 1 1 0 CoA-transferase family III Med13_N PF11597.3 gi|219850901|ref|YP_002465333.1| - 0.1 11.2 1.1 0.14 10.8 0.8 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 N-terminal DUF1180 PF06679.7 gi|219850901|ref|YP_002465333.1| - 0.73 9.7 6.1 1.3 8.8 4.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) E1-E2_ATPase PF00122.15 gi|219850902|ref|YP_002465334.1| - 8.2e-58 195.1 0.2 8.2e-58 195.1 0.1 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_N PF00690.21 gi|219850902|ref|YP_002465334.1| - 1.9e-20 72.0 0.1 6.1e-20 70.4 0.1 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.21 gi|219850902|ref|YP_002465334.1| - 3.7e-19 70.0 0.0 6.3e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|219850902|ref|YP_002465334.1| - 1.5e-16 60.4 14.7 1.5e-16 60.4 10.2 2.6 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|219850902|ref|YP_002465334.1| - 1.2e-12 48.4 0.0 2.2e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|219850902|ref|YP_002465334.1| - 4.7e-08 32.8 0.0 2.9e-06 27.1 0.0 2.9 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|219850902|ref|YP_002465334.1| - 0.0003 20.4 0.3 0.0008 19.0 0.1 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Orai-1 PF07856.7 gi|219850902|ref|YP_002465334.1| - 9.2 5.7 9.0 0.64 9.5 0.6 2.5 2 0 0 2 2 2 0 Mediator of CRAC channel activity Nitroreductase PF00881.19 gi|219850903|ref|YP_002465335.1| - 8.2e-23 81.0 0.1 1e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Pyridox_oxidase PF01243.15 gi|219850904|ref|YP_002465336.1| - 2e-12 46.9 0.0 3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|219850904|ref|YP_002465336.1| - 2.7e-07 30.4 0.0 4.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.7 gi|219850904|ref|YP_002465336.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative FMN-binding domain MarR_2 PF12802.2 gi|219850905|ref|YP_002465337.1| - 3.3e-11 42.6 0.0 6.9e-11 41.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|219850905|ref|YP_002465337.1| - 6.5e-10 38.5 0.0 1.3e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219850905|ref|YP_002465337.1| - 4.5e-07 30.1 0.0 1.5e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|219850905|ref|YP_002465337.1| - 4.7e-07 29.0 0.0 5.7e-06 25.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219850905|ref|YP_002465337.1| - 2.2e-06 27.2 0.0 1.4e-05 24.6 0.0 2.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|219850905|ref|YP_002465337.1| - 6.6e-06 26.0 0.0 1.3e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|219850905|ref|YP_002465337.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.12 gi|219850905|ref|YP_002465337.1| - 0.00033 20.2 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.14 gi|219850905|ref|YP_002465337.1| - 0.0014 18.4 0.0 0.0032 17.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|219850905|ref|YP_002465337.1| - 0.12 12.4 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor MFS_1 PF07690.11 gi|219850907|ref|YP_002465339.1| - 4.5e-46 157.1 74.0 5.2e-44 150.3 27.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219850907|ref|YP_002465339.1| - 7e-06 24.8 12.4 7e-06 24.8 8.6 2.5 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|219850907|ref|YP_002465339.1| - 0.025 12.6 25.0 0.058 11.5 17.3 1.5 1 1 0 1 1 1 0 Transmembrane secretion effector OATP PF03137.15 gi|219850907|ref|YP_002465339.1| - 0.33 8.9 0.0 0.33 8.9 0.0 3.4 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Methyltransf_26 PF13659.1 gi|219850908|ref|YP_002465340.1| - 1.1e-12 48.0 0.2 1.8e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219850908|ref|YP_002465340.1| - 1.1e-11 45.2 0.0 2.1e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219850908|ref|YP_002465340.1| - 3.2e-11 43.0 0.0 4.1e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|219850908|ref|YP_002465340.1| - 8.9e-10 38.0 0.0 1.3e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|219850908|ref|YP_002465340.1| - 4.3e-08 32.9 0.0 5.5e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|219850908|ref|YP_002465340.1| - 4.3e-08 33.4 0.0 7.4e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219850908|ref|YP_002465340.1| - 2.6e-07 30.4 0.0 5e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219850908|ref|YP_002465340.1| - 3.8e-07 30.5 0.0 5.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219850908|ref|YP_002465340.1| - 4.2e-06 27.1 0.0 6.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|219850908|ref|YP_002465340.1| - 2e-05 24.0 0.1 3.6e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|219850908|ref|YP_002465340.1| - 6.7e-05 22.3 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|219850908|ref|YP_002465340.1| - 0.00018 20.6 0.0 0.00025 20.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|219850908|ref|YP_002465340.1| - 0.01 14.9 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_24 PF13578.1 gi|219850908|ref|YP_002465340.1| - 0.042 14.6 0.0 0.076 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|219850908|ref|YP_002465340.1| - 0.05 13.1 0.0 0.072 12.6 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein DUF2196 PF09962.4 gi|219850909|ref|YP_002465341.1| - 1.5e-29 101.5 4.2 1.8e-29 101.2 2.9 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Oxidored_nitro PF00148.14 gi|219850910|ref|YP_002465342.1| - 4.1e-43 147.5 0.0 2.2e-24 85.8 0.0 2.0 2 0 0 2 2 2 2 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|219850911|ref|YP_002465343.1| - 1.3e-53 182.1 0.0 1.6e-53 181.7 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.13 gi|219850912|ref|YP_002465344.1| - 1.2e-112 375.6 0.1 1.3e-112 375.4 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|219850912|ref|YP_002465344.1| - 2.7e-12 46.5 0.0 4.8e-12 45.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|219850912|ref|YP_002465344.1| - 2.1e-07 30.2 0.1 3.9e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|219850912|ref|YP_002465344.1| - 2.3e-06 27.1 0.3 0.035 13.4 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein AAA_31 PF13614.1 gi|219850912|ref|YP_002465344.1| - 9.1e-06 25.6 0.0 3.3e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|219850912|ref|YP_002465344.1| - 0.0018 17.4 0.5 0.0042 16.1 0.0 1.8 3 0 0 3 3 3 1 ATPase MipZ AAA_16 PF13191.1 gi|219850912|ref|YP_002465344.1| - 0.0022 17.9 0.2 0.0098 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|219850912|ref|YP_002465344.1| - 0.017 14.4 0.4 0.042 13.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|219850912|ref|YP_002465344.1| - 0.024 14.0 0.1 0.06 12.7 0.1 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|219850912|ref|YP_002465344.1| - 0.044 12.5 0.5 0.1 11.3 0.3 1.7 1 1 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|219850912|ref|YP_002465344.1| - 0.072 13.2 0.1 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|219850912|ref|YP_002465344.1| - 0.081 12.3 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_26 PF13500.1 gi|219850912|ref|YP_002465344.1| - 0.22 11.1 0.7 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Cupin_2 PF07883.6 gi|219850913|ref|YP_002465345.1| - 1.8e-11 43.3 0.0 2.4e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|219850913|ref|YP_002465345.1| - 7.1e-07 28.9 0.0 9.7e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|219850913|ref|YP_002465345.1| - 5.5e-05 22.4 0.0 7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|219850913|ref|YP_002465345.1| - 7.9e-05 22.2 0.0 8.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.2 gi|219850913|ref|YP_002465345.1| - 9.4e-05 22.1 0.0 0.00011 21.8 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|219850913|ref|YP_002465345.1| - 0.00061 19.4 0.0 0.00061 19.4 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain AraC_N PF06719.8 gi|219850913|ref|YP_002465345.1| - 0.0047 16.2 0.0 0.006 15.8 0.0 1.1 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus MannoseP_isomer PF01050.13 gi|219850913|ref|YP_002465345.1| - 0.029 14.0 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|219850913|ref|YP_002465345.1| - 0.079 12.9 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like MIP PF00230.15 gi|219850914|ref|YP_002465346.1| - 2.9e-46 157.7 18.8 3.2e-46 157.6 13.0 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2180 PF09947.4 gi|219850915|ref|YP_002465347.1| - 8.5e-35 118.3 5.7 9.2e-35 118.2 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|219850915|ref|YP_002465347.1| - 0.007 16.2 1.3 0.0091 15.8 0.9 1.2 1 0 0 1 1 1 1 FYVE zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|219850915|ref|YP_002465347.1| - 0.021 15.2 4.5 0.031 14.6 0.6 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF3039 PF11238.3 gi|219850915|ref|YP_002465347.1| - 0.05 13.0 0.7 0.05 13.0 0.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) Prok-RING_1 PF14446.1 gi|219850915|ref|YP_002465347.1| - 0.18 11.5 8.5 2.1 8.1 3.1 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-AN1 PF01428.11 gi|219850915|ref|YP_002465347.1| - 0.23 11.3 2.6 0.44 10.4 0.6 2.0 2 0 0 2 2 2 0 AN1-like Zinc finger Transp_Tc5_C PF04236.10 gi|219850915|ref|YP_002465347.1| - 0.44 10.8 4.9 0.12 12.6 1.5 1.6 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-C3HC4_2 PF13923.1 gi|219850915|ref|YP_002465347.1| - 0.58 10.2 4.3 2.8 8.0 1.0 2.3 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|219850915|ref|YP_002465347.1| - 0.78 9.6 4.6 3 7.7 1.7 2.1 2 0 0 2 2 2 0 IBR domain zf-RING_4 PF14570.1 gi|219850915|ref|YP_002465347.1| - 0.9 9.1 6.6 2.4 7.7 1.2 2.0 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DZR PF12773.2 gi|219850915|ref|YP_002465347.1| - 4.2 7.2 6.5 38 4.1 4.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF2193 PF09959.4 gi|219850916|ref|YP_002465348.1| - 8.1e-292 967.7 2.9 9.1e-292 967.6 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Malic_M PF03949.10 gi|219850917|ref|YP_002465349.1| - 4.6e-67 226.2 0.3 6e-67 225.8 0.2 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|219850917|ref|YP_002465349.1| - 2.5e-28 98.8 0.2 4.8e-21 75.1 0.1 2.4 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Jag_N PF14804.1 gi|219850917|ref|YP_002465349.1| - 0.19 11.7 2.4 0.44 10.6 0.1 2.6 3 0 0 3 3 3 0 Jag N-terminus DUF4232 PF14016.1 gi|219850918|ref|YP_002465350.1| - 0.046 13.3 0.1 0.086 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) DUF3353 PF11833.3 gi|219850918|ref|YP_002465350.1| - 3 7.2 7.4 0.32 10.4 1.8 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3353) Trep_Strep PF09605.5 gi|219850919|ref|YP_002465351.1| - 0.00062 19.4 1.0 0.00088 18.9 0.7 1.2 1 0 0 1 1 1 1 Hypothetical bacterial integral membrane protein (Trep_Strep) IncA PF04156.9 gi|219850919|ref|YP_002465351.1| - 0.023 14.3 0.1 0.023 14.3 0.1 1.8 2 0 0 2 2 2 0 IncA protein KbaA PF14089.1 gi|219850919|ref|YP_002465351.1| - 0.031 13.8 1.4 0.06 12.8 0.1 1.8 2 0 0 2 2 2 0 KinB-signalling pathway activation in sporulation SdpI PF13630.1 gi|219850919|ref|YP_002465351.1| - 0.18 11.5 3.6 0.97 9.1 0.5 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family MARVEL PF01284.18 gi|219850919|ref|YP_002465351.1| - 0.37 10.6 7.4 1.9 8.2 2.1 2.7 1 1 1 2 2 2 0 Membrane-associating domain COPI_assoc PF08507.5 gi|219850919|ref|YP_002465351.1| - 1.1 8.9 4.5 3.6 7.2 1.2 2.4 1 1 2 3 3 3 0 COPI associated protein DUF4131 PF13567.1 gi|219850919|ref|YP_002465351.1| - 1.9 7.8 8.0 1.4 8.2 3.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF308 PF03729.8 gi|219850919|ref|YP_002465351.1| - 3.9 7.5 14.1 4.4 7.3 7.8 2.4 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) COPI_assoc PF08507.5 gi|219850920|ref|YP_002465352.1| - 0.71 9.5 6.2 0.18 11.4 1.7 2.0 1 1 1 2 2 2 0 COPI associated protein DUF973 PF06157.6 gi|219850920|ref|YP_002465352.1| - 1.2 8.0 3.7 0.25 10.2 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF973) DUF373 PF04123.8 gi|219850920|ref|YP_002465352.1| - 1.3 7.9 4.2 0.18 10.7 0.3 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF373) MerC PF03203.9 gi|219850920|ref|YP_002465352.1| - 4.2 7.7 9.2 4 7.8 1.3 2.2 1 1 1 2 2 2 0 MerC mercury resistance protein HTH_3 PF01381.17 gi|219850921|ref|YP_002465353.1| - 4e-12 45.7 0.0 4.4e-12 45.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|219850921|ref|YP_002465353.1| - 1.8e-10 40.8 0.0 2.2e-10 40.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|219850921|ref|YP_002465353.1| - 1.6e-08 34.5 0.0 1.7e-08 34.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219850921|ref|YP_002465353.1| - 1.3e-05 25.3 0.0 1.5e-05 25.1 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|219850921|ref|YP_002465353.1| - 0.00054 19.5 0.0 0.00061 19.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|219850921|ref|YP_002465353.1| - 0.0016 18.1 0.0 0.0052 16.5 0.0 1.7 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|219850921|ref|YP_002465353.1| - 0.057 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GAF_2 PF13185.1 gi|219850922|ref|YP_002465354.1| - 0.0032 17.9 0.0 0.0037 17.7 0.0 1.0 1 0 0 1 1 1 1 GAF domain CMD PF02627.15 gi|219850923|ref|YP_002465355.1| - 4.4e-16 58.4 0.1 6.3e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family MCR_C PF04609.7 gi|219850924|ref|YP_002465356.1| - 6.7e-106 352.9 1.9 7.7e-106 352.7 1.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|219850925|ref|YP_002465357.1| - 3.9e-62 208.7 0.0 4.3e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|219850926|ref|YP_002465358.1| - 4e-57 193.5 3.7 5.7e-57 193.0 2.6 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.20 gi|219850926|ref|YP_002465358.1| - 0.051 13.0 0.1 13 5.2 0.0 2.6 3 0 0 3 3 3 0 Glycoprotease family FtsA PF14450.1 gi|219850926|ref|YP_002465358.1| - 0.2 11.5 3.2 6.4 6.6 0.1 3.1 2 1 0 2 2 2 0 Cell division protein FtsA DUF2112 PF09885.4 gi|219850927|ref|YP_002465359.1| - 1.4e-63 212.7 0.0 1.6e-63 212.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|219850928|ref|YP_002465360.1| - 9.7e-40 134.3 0.0 1.2e-39 133.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) FBD PF08387.5 gi|219850928|ref|YP_002465360.1| - 0.084 12.3 0.0 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 FBD Pro_isomerase PF00160.16 gi|219850929|ref|YP_002465361.1| - 0.0031 17.7 0.0 0.16 12.1 0.0 3.0 4 0 0 4 4 4 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PASTA PF03793.14 gi|219850929|ref|YP_002465361.1| - 0.012 15.2 0.1 0.037 13.6 0.0 1.8 1 0 0 1 1 1 0 PASTA domain DUF1255 PF06865.6 gi|219850929|ref|YP_002465361.1| - 0.11 12.7 0.0 0.46 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1255) ABC_tran PF00005.22 gi|219850930|ref|YP_002465362.1| - 7.8e-52 175.2 0.0 3.9e-26 91.9 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|219850930|ref|YP_002465362.1| - 3.8e-09 36.9 0.2 0.055 13.4 0.2 4.2 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|219850930|ref|YP_002465362.1| - 9.8e-06 24.8 0.1 0.094 11.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|219850930|ref|YP_002465362.1| - 2.3e-05 23.8 0.2 0.028 13.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219850930|ref|YP_002465362.1| - 2.6e-05 24.6 0.4 0.054 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|219850930|ref|YP_002465362.1| - 7e-05 22.8 1.6 0.65 9.9 0.0 3.3 2 2 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|219850930|ref|YP_002465362.1| - 0.00023 20.4 2.7 0.055 12.6 0.0 3.6 3 1 0 4 4 4 1 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|219850930|ref|YP_002465362.1| - 0.00036 19.4 1.0 0.074 11.9 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain AAA_17 PF13207.1 gi|219850930|ref|YP_002465362.1| - 0.00041 21.1 4.5 0.093 13.5 0.9 2.9 2 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|219850930|ref|YP_002465362.1| - 0.00058 19.4 0.2 0.9 9.1 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|219850930|ref|YP_002465362.1| - 0.00069 18.9 0.1 0.78 8.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.1 gi|219850930|ref|YP_002465362.1| - 0.00076 19.1 2.6 1.9 8.3 0.0 3.9 3 1 0 3 3 3 2 Part of AAA domain MobB PF03205.9 gi|219850930|ref|YP_002465362.1| - 0.00086 19.0 0.3 0.2 11.3 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|219850930|ref|YP_002465362.1| - 0.00096 18.6 0.0 0.65 9.4 0.0 2.8 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.1 gi|219850930|ref|YP_002465362.1| - 0.001 18.9 0.0 2.1 8.3 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|219850930|ref|YP_002465362.1| - 0.0015 18.0 0.0 2.2 7.7 0.0 2.4 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.13 gi|219850930|ref|YP_002465362.1| - 0.0017 17.9 0.5 0.93 9.0 0.1 2.5 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|219850930|ref|YP_002465362.1| - 0.0019 18.3 3.3 0.96 9.5 0.0 3.0 2 2 0 2 2 2 2 AAA domain Miro PF08477.8 gi|219850930|ref|YP_002465362.1| - 0.0027 18.1 0.0 3.4 8.1 0.1 2.9 2 1 0 2 2 2 1 Miro-like protein AAA_30 PF13604.1 gi|219850930|ref|YP_002465362.1| - 0.0043 16.6 1.6 2.9 7.4 0.1 2.9 3 0 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|219850930|ref|YP_002465362.1| - 0.0047 16.3 0.3 4.5 6.6 0.0 2.8 3 0 0 3 3 3 1 AAA-like domain MMR_HSR1 PF01926.18 gi|219850930|ref|YP_002465362.1| - 0.012 15.5 0.2 4.3 7.3 0.1 3.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|219850930|ref|YP_002465362.1| - 0.016 14.0 1.1 0.73 8.5 0.0 2.3 2 0 0 2 2 2 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|219850930|ref|YP_002465362.1| - 0.034 13.6 0.1 8.7 5.7 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|219850930|ref|YP_002465362.1| - 0.04 13.3 0.4 3.3 7.0 0.0 2.9 3 1 1 4 4 3 0 AAA domain IstB_IS21 PF01695.12 gi|219850930|ref|YP_002465362.1| - 0.046 13.1 0.2 9.9 5.5 0.0 3.3 3 1 0 3 3 3 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|219850930|ref|YP_002465362.1| - 0.055 13.7 5.9 0.38 11.0 0.2 3.5 2 2 1 3 3 3 0 AAA domain DUF87 PF01935.12 gi|219850930|ref|YP_002465362.1| - 0.063 13.0 4.2 3.8 7.2 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_13 PF13166.1 gi|219850930|ref|YP_002465362.1| - 0.066 11.6 0.0 0.64 8.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|219850930|ref|YP_002465362.1| - 0.095 12.3 2.1 10 5.7 0.1 2.5 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.1 gi|219850930|ref|YP_002465362.1| - 0.17 11.4 0.7 9.3 5.7 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|219850930|ref|YP_002465362.1| - 0.21 10.5 0.0 12 4.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Hydrolase PF00702.21 gi|219850931|ref|YP_002465363.1| - 5.3e-18 66.2 1.3 2.5e-17 64.0 0.9 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219850931|ref|YP_002465363.1| - 6.6e-12 45.9 0.1 1.1e-11 45.2 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|219850931|ref|YP_002465363.1| - 1.8e-05 25.0 0.0 0.00012 22.3 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|219850931|ref|YP_002465363.1| - 7.7e-05 22.3 0.0 0.032 13.7 0.0 2.6 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|219850931|ref|YP_002465363.1| - 0.071 12.8 0.1 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|219850931|ref|YP_002465363.1| - 0.074 12.9 0.0 0.75 9.7 0.0 2.5 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase IF-2B PF01008.12 gi|219850932|ref|YP_002465364.1| - 7.2e-82 274.5 5.0 8.3e-82 274.3 3.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.17 gi|219850932|ref|YP_002465364.1| - 0.016 14.8 6.1 0.4 10.3 1.1 3.3 2 1 0 2 2 2 0 DeoR C terminal sensor domain RuBisCO_large PF00016.15 gi|219850933|ref|YP_002465365.1| - 1.4e-67 227.7 0.4 2.4e-66 223.7 0.3 2.1 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|219850933|ref|YP_002465365.1| - 9.5e-19 67.3 0.0 8.2e-18 64.3 0.0 2.1 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DAP_epimerase PF01678.14 gi|219850934|ref|YP_002465366.1| - 1.3e-55 186.4 0.4 1.3e-29 102.5 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Rad51 PF08423.6 gi|219850935|ref|YP_002465367.1| - 4.7e-28 97.8 0.0 5.8e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|219850935|ref|YP_002465367.1| - 4.2e-10 39.1 0.0 8.2e-10 38.1 0.0 1.4 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|219850935|ref|YP_002465367.1| - 1.5e-09 37.3 0.0 2.2e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|219850935|ref|YP_002465367.1| - 2.6e-09 36.7 0.0 3.9e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|219850935|ref|YP_002465367.1| - 0.0011 18.4 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_18 PF13238.1 gi|219850935|ref|YP_002465367.1| - 0.015 15.5 0.0 0.032 14.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|219850935|ref|YP_002465367.1| - 0.043 13.2 0.0 0.067 12.6 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|219850935|ref|YP_002465367.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF111 PF01969.12 gi|219850936|ref|YP_002465368.1| - 9.9e-113 376.7 2.2 1.1e-112 376.6 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF3773 PF12608.3 gi|219850936|ref|YP_002465368.1| - 0.15 12.0 0.4 14 5.7 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3773) AAA PF00004.24 gi|219850937|ref|YP_002465369.1| - 1.6e-95 316.2 0.0 2.6e-49 166.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|219850937|ref|YP_002465369.1| - 8.4e-28 96.1 0.1 3.6e-27 94.1 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|219850937|ref|YP_002465369.1| - 1.4e-12 47.1 0.1 7.1e-06 25.2 0.0 3.1 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|219850937|ref|YP_002465369.1| - 3.6e-12 46.6 2.4 4e-06 26.9 0.0 3.3 4 1 0 4 4 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|219850937|ref|YP_002465369.1| - 1.9e-11 44.2 0.6 0.0095 16.0 0.0 4.7 2 2 2 4 4 4 2 AAA domain AAA_5 PF07728.9 gi|219850937|ref|YP_002465369.1| - 2.2e-10 40.3 0.5 0.00066 19.4 0.2 3.8 3 1 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|219850937|ref|YP_002465369.1| - 1e-09 37.6 0.0 0.00065 18.5 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|219850937|ref|YP_002465369.1| - 1.1e-09 37.9 0.7 0.0013 18.4 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_17 PF13207.1 gi|219850937|ref|YP_002465369.1| - 3.2e-09 37.6 0.7 0.0016 19.2 0.2 3.3 3 1 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|219850937|ref|YP_002465369.1| - 4.2e-09 36.5 0.0 6.3e-05 22.9 0.0 3.4 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|219850937|ref|YP_002465369.1| - 8.8e-09 35.3 0.0 0.0018 18.1 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|219850937|ref|YP_002465369.1| - 5.7e-08 32.7 0.0 0.002 18.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|219850937|ref|YP_002465369.1| - 8.2e-08 31.8 0.1 0.014 14.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|219850937|ref|YP_002465369.1| - 4.3e-07 29.5 7.9 0.68 9.3 0.1 4.6 2 2 1 4 4 4 3 AAA domain AAA_18 PF13238.1 gi|219850937|ref|YP_002465369.1| - 5.6e-07 29.9 0.0 0.032 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|219850937|ref|YP_002465369.1| - 1.5e-06 27.4 0.0 0.056 12.5 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|219850937|ref|YP_002465369.1| - 1.9e-06 27.2 0.6 0.051 12.7 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|219850937|ref|YP_002465369.1| - 3.8e-06 26.9 0.0 0.0069 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|219850937|ref|YP_002465369.1| - 3.8e-06 26.4 2.7 1.3e-05 24.7 1.0 2.6 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_24 PF13479.1 gi|219850937|ref|YP_002465369.1| - 8.7e-06 25.4 0.2 0.16 11.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|219850937|ref|YP_002465369.1| - 1e-05 25.6 0.0 0.23 11.4 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|219850937|ref|YP_002465369.1| - 2.7e-05 24.2 0.0 0.14 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|219850937|ref|YP_002465369.1| - 4.7e-05 22.9 0.0 0.31 10.4 0.0 2.8 2 1 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|219850937|ref|YP_002465369.1| - 4.7e-05 22.6 0.7 0.44 9.6 0.0 3.4 2 1 1 3 3 3 2 KaiC PhoH PF02562.11 gi|219850937|ref|YP_002465369.1| - 5.3e-05 22.5 0.2 0.31 10.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|219850937|ref|YP_002465369.1| - 0.00012 21.1 0.1 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|219850937|ref|YP_002465369.1| - 0.00015 20.8 0.0 0.24 10.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|219850937|ref|YP_002465369.1| - 0.00067 19.4 0.0 0.98 9.0 0.0 3.2 2 1 0 2 2 2 1 Archaeal ATPase AAA_3 PF07726.6 gi|219850937|ref|YP_002465369.1| - 0.00078 19.0 0.0 1.8 8.2 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|219850937|ref|YP_002465369.1| - 0.0011 17.9 0.0 0.88 8.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|219850937|ref|YP_002465369.1| - 0.0011 17.9 0.0 0.93 8.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|219850937|ref|YP_002465369.1| - 0.0015 18.3 0.0 1.9 8.2 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit SKI PF01202.17 gi|219850937|ref|YP_002465369.1| - 0.0028 17.5 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|219850937|ref|YP_002465369.1| - 0.0032 17.0 0.0 2.5 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain Molydop_binding PF01568.16 gi|219850937|ref|YP_002465369.1| - 0.004 16.9 0.2 5 6.9 0.1 3.0 2 1 1 3 3 3 0 Molydopterin dinucleotide binding domain ABC_tran PF00005.22 gi|219850937|ref|YP_002465369.1| - 0.0048 17.2 0.0 3.6 7.8 0.0 2.7 2 0 0 2 2 2 0 ABC transporter AAA_30 PF13604.1 gi|219850937|ref|YP_002465369.1| - 0.0051 16.4 0.1 3.9 7.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|219850937|ref|YP_002465369.1| - 0.0061 16.0 0.0 1.6 8.1 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|219850937|ref|YP_002465369.1| - 0.0068 16.0 1.1 7.1 6.2 0.1 4.0 4 0 0 4 4 4 0 NACHT domain IPT PF01745.11 gi|219850937|ref|YP_002465369.1| - 0.009 15.2 0.3 2.7 7.0 0.1 2.3 2 0 0 2 2 2 1 Isopentenyl transferase UPF0079 PF02367.12 gi|219850937|ref|YP_002465369.1| - 0.015 14.9 0.0 3 7.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|219850937|ref|YP_002465369.1| - 0.027 14.1 1.8 15 5.2 0.0 4.2 4 1 1 5 5 4 0 NTPase KAP_NTPase PF07693.9 gi|219850937|ref|YP_002465369.1| - 0.048 12.6 0.0 2.9 6.8 0.0 2.7 2 1 0 3 3 3 0 KAP family P-loop domain DEAD PF00270.24 gi|219850937|ref|YP_002465369.1| - 0.054 12.9 0.1 45 3.4 0.0 3.6 4 0 0 4 4 3 0 DEAD/DEAH box helicase DUF927 PF06048.6 gi|219850937|ref|YP_002465369.1| - 0.074 12.2 0.0 3.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) AFG1_ATPase PF03969.11 gi|219850937|ref|YP_002465369.1| - 0.095 11.4 0.0 7.2 5.3 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase AAA_23 PF13476.1 gi|219850937|ref|YP_002465369.1| - 0.097 12.9 0.0 14 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.1 gi|219850937|ref|YP_002465369.1| - 0.12 12.3 0.0 1.8 8.4 0.0 2.7 3 0 0 3 3 3 0 Cytidylate kinase-like family Guanylate_kin PF00625.16 gi|219850937|ref|YP_002465369.1| - 0.14 11.5 0.2 45 3.4 0.0 3.7 3 1 1 4 4 4 0 Guanylate kinase Zot PF05707.7 gi|219850937|ref|YP_002465369.1| - 0.2 11.0 0.6 36 3.7 0.0 3.5 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) TauE PF01925.14 gi|219850938|ref|YP_002465370.1| - 2.8e-45 154.6 42.5 3.3e-45 154.4 29.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TMEMspv1-c74-12 PF11044.3 gi|219850938|ref|YP_002465370.1| - 1.3 8.6 3.2 6.2 6.4 0.1 2.9 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein TspO_MBR PF03073.10 gi|219850939|ref|YP_002465371.1| - 2.9e-50 169.6 21.3 3.3e-50 169.4 14.8 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF1469 PF07332.6 gi|219850939|ref|YP_002465371.1| - 0.053 13.2 0.4 0.053 13.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) AMP-binding PF00501.23 gi|219850940|ref|YP_002465372.1| - 2.7e-97 325.8 0.1 3.1e-97 325.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219850940|ref|YP_002465372.1| - 2.5e-17 63.5 1.8 5.8e-17 62.4 0.1 2.3 2 1 1 3 3 3 1 AMP-binding enzyme C-terminal domain PAS PF00989.19 gi|219850941|ref|YP_002465373.1| - 3.9e-28 97.5 0.2 6.4e-11 42.0 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|219850941|ref|YP_002465373.1| - 2.2e-27 95.4 0.0 1.5e-09 38.1 0.0 4.6 4 1 0 4 4 4 3 PAS domain PAS_3 PF08447.6 gi|219850941|ref|YP_002465373.1| - 2.5e-24 85.1 0.0 7.4e-15 54.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219850941|ref|YP_002465373.1| - 1.6e-21 76.4 3.4 4.9e-09 36.2 0.0 4.3 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219850941|ref|YP_002465373.1| - 9.7e-12 44.3 0.1 0.012 15.4 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|219850941|ref|YP_002465373.1| - 4.3e-11 42.5 0.1 8.6e-11 41.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|219850941|ref|YP_002465373.1| - 3.8e-09 36.5 0.0 2.4e-08 33.9 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_11 PF14598.1 gi|219850941|ref|YP_002465373.1| - 2.5e-08 33.8 0.0 1e-07 31.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain SPOB_a PF14689.1 gi|219850941|ref|YP_002465373.1| - 0.0019 17.7 0.8 0.0057 16.1 0.5 2.0 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.20 gi|219850941|ref|YP_002465373.1| - 0.0074 16.2 0.1 0.029 14.3 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|219850941|ref|YP_002465373.1| - 0.016 15.1 4.8 1.7 8.6 0.3 4.0 3 1 1 4 4 4 0 PAS fold LcrG PF07216.7 gi|219850941|ref|YP_002465373.1| - 0.051 13.5 3.1 1.3 9.0 0.1 3.1 3 0 0 3 3 3 0 LcrG protein KaiC PF06745.8 gi|219850942|ref|YP_002465374.1| - 2e-13 50.0 0.1 2.5e-07 30.0 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.6 gi|219850942|ref|YP_002465374.1| - 8.9e-05 21.4 0.2 0.00015 20.7 0.1 1.4 2 0 0 2 2 2 1 PAXNEB protein DUF835 PF05763.7 gi|219850942|ref|YP_002465374.1| - 0.00014 21.4 0.0 0.00022 20.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) RecA PF00154.16 gi|219850942|ref|YP_002465374.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|219850942|ref|YP_002465374.1| - 0.16 11.3 0.1 3.9 6.8 0.0 2.2 1 1 1 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|219850943|ref|YP_002465375.1| - 1.4e-36 126.2 6.1 1.4e-36 126.2 4.2 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|219850943|ref|YP_002465375.1| - 1.8e-20 72.8 13.2 1.8e-20 72.8 9.1 2.6 3 0 0 3 3 3 1 FtsX-like permease family LSM14 PF12701.2 gi|219850943|ref|YP_002465375.1| - 0.00032 20.4 1.5 0.00046 19.9 0.2 1.9 2 0 0 2 2 2 1 Scd6-like Sm domain Gly_rich PF12810.2 gi|219850943|ref|YP_002465375.1| - 0.12 11.9 21.2 0.1 12.1 13.8 1.5 1 1 0 1 1 1 0 Glycine rich protein ABC_tran PF00005.22 gi|219850944|ref|YP_002465376.1| - 1.8e-31 109.2 0.0 2.3e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219850944|ref|YP_002465376.1| - 6.4e-09 36.1 0.0 0.00057 19.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219850944|ref|YP_002465376.1| - 8.3e-06 25.1 0.1 0.0011 18.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219850944|ref|YP_002465376.1| - 0.00021 20.7 0.2 0.00036 20.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|219850944|ref|YP_002465376.1| - 0.00023 20.7 0.1 0.0016 17.9 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|219850944|ref|YP_002465376.1| - 0.0016 18.5 0.0 0.025 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|219850944|ref|YP_002465376.1| - 0.0021 17.2 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|219850944|ref|YP_002465376.1| - 0.0092 15.9 0.0 0.025 14.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|219850944|ref|YP_002465376.1| - 0.017 14.6 0.1 0.043 13.2 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|219850944|ref|YP_002465376.1| - 0.017 15.9 0.0 0.025 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|219850944|ref|YP_002465376.1| - 0.027 13.8 0.1 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|219850944|ref|YP_002465376.1| - 0.054 13.8 0.1 0.075 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|219850944|ref|YP_002465376.1| - 0.067 13.0 0.2 0.13 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|219850944|ref|YP_002465376.1| - 0.078 12.7 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 Phage_attach PF05354.6 gi|219850944|ref|YP_002465376.1| - 0.085 12.4 0.3 0.97 9.0 0.0 2.2 2 0 0 2 2 2 0 Phage Head-Tail Attachment Rad17 PF03215.10 gi|219850944|ref|YP_002465376.1| - 0.088 11.4 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|219850944|ref|YP_002465376.1| - 0.095 12.2 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|219850944|ref|YP_002465376.1| - 0.12 12.6 0.0 0.77 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain CARDB PF07705.6 gi|219850945|ref|YP_002465377.1| - 0.014 15.3 18.0 0.14 12.2 0.3 4.0 3 1 1 4 4 4 0 CARDB Spo0M PF07070.6 gi|219850945|ref|YP_002465377.1| - 0.11 11.8 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 SpoOM protein DUF824 PF05688.6 gi|219850945|ref|YP_002465377.1| - 0.49 10.0 7.4 1.6 8.4 0.1 3.4 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) TrmB PF01978.14 gi|219850946|ref|YP_002465378.1| - 3.2e-18 65.1 0.2 5.6e-18 64.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|219850946|ref|YP_002465378.1| - 0.0022 17.0 0.0 0.0043 16.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219850946|ref|YP_002465378.1| - 0.024 14.2 0.3 0.092 12.3 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|219850946|ref|YP_002465378.1| - 0.025 14.2 0.1 0.07 12.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|219850946|ref|YP_002465378.1| - 0.071 13.0 1.2 0.11 12.4 0.1 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HATPase_c PF02518.21 gi|219850947|ref|YP_002465379.1| - 1.5e-21 76.1 0.1 3.1e-21 75.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|219850947|ref|YP_002465379.1| - 7.9e-20 70.7 0.1 7.2e-10 38.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|219850947|ref|YP_002465379.1| - 2.8e-19 69.4 0.0 1.9e-11 44.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219850947|ref|YP_002465379.1| - 3.4e-14 52.8 0.3 5.6e-06 26.3 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219850947|ref|YP_002465379.1| - 9.8e-11 41.1 0.0 0.00068 19.4 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|219850947|ref|YP_002465379.1| - 1.3e-09 37.9 0.1 5.3e-08 32.8 0.0 3.0 2 1 0 2 2 2 1 PAS fold ABC_sub_bind PF04392.7 gi|219850947|ref|YP_002465379.1| - 4.2e-06 25.9 0.0 7.2e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein HisKA PF00512.20 gi|219850947|ref|YP_002465379.1| - 2.7e-05 24.0 0.0 9.7e-05 22.2 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|219850947|ref|YP_002465379.1| - 5.6e-05 23.1 8.5 0.055 13.4 0.0 4.9 4 2 0 4 4 3 2 PAS fold PAS_11 PF14598.1 gi|219850947|ref|YP_002465379.1| - 0.0088 15.9 0.6 0.036 14.0 0.0 2.4 3 0 0 3 3 2 1 PAS domain Fzo_mitofusin PF04799.8 gi|219850947|ref|YP_002465379.1| - 0.035 13.4 1.9 0.086 12.2 1.3 1.6 1 0 0 1 1 1 0 fzo-like conserved region Cupin_1 PF00190.17 gi|219850947|ref|YP_002465379.1| - 0.084 12.3 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Cupin IncA PF04156.9 gi|219850947|ref|YP_002465379.1| - 6.3 6.3 11.5 78 2.7 8.0 2.5 1 1 0 1 1 1 0 IncA protein Tox-HNH-HHH PF15637.1 gi|219850948|ref|YP_002465380.1| - 0.15 11.8 0.6 0.38 10.5 0.4 1.7 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif Meth_synt_2 PF01717.13 gi|219850949|ref|YP_002465381.1| - 3.6e-62 210.2 1.4 8.4e-61 205.7 1.0 2.5 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|219850949|ref|YP_002465381.1| - 5.9e-09 35.6 0.0 2.2e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|219850949|ref|YP_002465381.1| - 0.0012 17.8 0.0 0.0093 14.9 0.0 2.2 2 1 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) tRNA-synt_2 PF00152.15 gi|219850950|ref|YP_002465382.1| - 8.3e-90 300.9 0.4 1e-89 300.6 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|219850950|ref|YP_002465382.1| - 4.2e-14 52.1 0.1 6.9e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|219850950|ref|YP_002465382.1| - 0.005 16.0 0.9 0.085 12.0 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) PLAC9 PF15205.1 gi|219850950|ref|YP_002465382.1| - 0.034 14.4 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 Placenta-specific protein 9 RDD PF06271.7 gi|219850951|ref|YP_002465383.1| - 9.9e-24 83.7 7.3 1.2e-23 83.5 5.1 1.1 1 0 0 1 1 1 1 RDD family zf-ribbon_3 PF13248.1 gi|219850951|ref|YP_002465383.1| - 5.8e-08 31.7 1.0 1e-07 30.9 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219850951|ref|YP_002465383.1| - 6.4e-07 28.6 0.9 1.1e-06 27.9 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219850951|ref|YP_002465383.1| - 0.00089 19.0 3.0 0.0015 18.2 2.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|219850951|ref|YP_002465383.1| - 0.034 13.8 1.0 6.2 6.5 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|219850951|ref|YP_002465383.1| - 0.1 12.0 3.7 0.38 10.2 2.6 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L40e PF01020.12 gi|219850951|ref|YP_002465383.1| - 0.15 11.6 2.3 1 9.0 0.0 2.2 1 1 1 2 2 2 0 Ribosomal L40e family Prok-RING_1 PF14446.1 gi|219850951|ref|YP_002465383.1| - 0.31 10.7 4.4 0.91 9.3 3.0 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-tcix PF14952.1 gi|219850951|ref|YP_002465383.1| - 0.35 10.2 2.7 0.74 9.1 1.9 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding DUF3325 PF11804.3 gi|219850951|ref|YP_002465383.1| - 3.4 7.6 7.3 0.48 10.3 2.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) Fasciclin PF02469.17 gi|219850952|ref|YP_002465384.1| - 1.2e-24 86.7 0.0 1.4e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain GTP_EFTU PF00009.22 gi|219850953|ref|YP_002465385.1| - 6.3e-59 198.5 0.3 1.2e-58 197.6 0.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|219850953|ref|YP_002465385.1| - 4.5e-28 97.2 0.0 1.5e-27 95.5 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|219850953|ref|YP_002465385.1| - 2.2e-25 88.3 1.9 4.4e-25 87.3 0.3 2.2 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|219850953|ref|YP_002465385.1| - 8e-24 83.3 0.0 4.1e-23 81.0 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|219850953|ref|YP_002465385.1| - 9.9e-15 54.4 0.7 9.9e-15 54.4 0.5 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|219850953|ref|YP_002465385.1| - 0.00027 20.8 0.0 0.00061 19.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ribosomal_S7 PF00177.16 gi|219850954|ref|YP_002465386.1| - 5.7e-37 126.5 2.9 7e-37 126.2 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|219850955|ref|YP_002465387.1| - 5.3e-37 125.9 0.1 6e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PTPS PF01242.14 gi|219850956|ref|YP_002465388.1| - 1.3e-31 108.8 0.1 1.6e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.1 gi|219850957|ref|YP_002465389.1| - 2.2e-20 72.8 0.5 3.1e-20 72.3 0.4 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|219850957|ref|YP_002465389.1| - 5.8e-14 52.5 0.4 7.1e-14 52.3 0.3 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219850957|ref|YP_002465389.1| - 4.8e-12 46.1 2.3 7.8e-12 45.4 1.6 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.8 gi|219850958|ref|YP_002465390.1| - 5e-73 244.8 0.0 5.6e-73 244.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|219850958|ref|YP_002465390.1| - 2.1e-08 33.8 0.0 3.8e-06 26.5 0.0 2.5 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|219850958|ref|YP_002465390.1| - 7.8e-06 25.5 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|219850958|ref|YP_002465390.1| - 7.9e-05 21.6 0.0 0.00011 21.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|219850958|ref|YP_002465390.1| - 0.00036 19.1 0.0 0.00048 18.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|219850958|ref|YP_002465390.1| - 0.00073 19.0 0.0 0.0019 17.7 0.0 1.6 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.14 gi|219850958|ref|YP_002465390.1| - 0.084 11.8 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase NUDIX PF00293.23 gi|219850959|ref|YP_002465391.1| - 4.8e-15 55.3 0.0 6.7e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Abhydrolase_5 PF12695.2 gi|219850960|ref|YP_002465392.1| - 6.7e-13 48.6 0.0 1.1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|219850960|ref|YP_002465392.1| - 1.4e-11 44.7 0.7 1.6e-06 28.2 0.8 2.7 2 1 1 3 3 3 2 Alpha/beta hydrolase family AXE1 PF05448.7 gi|219850960|ref|YP_002465392.1| - 0.0011 17.5 0.6 0.0079 14.7 0.4 1.9 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.3 gi|219850960|ref|YP_002465392.1| - 0.0067 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|219850960|ref|YP_002465392.1| - 0.017 14.6 0.2 0.54 9.7 0.1 2.4 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|219850960|ref|YP_002465392.1| - 0.038 13.1 0.4 2.5 7.2 0.3 2.8 1 1 0 1 1 1 0 Prolyl oligopeptidase family eRF1_2 PF03464.10 gi|219850961|ref|YP_002465393.1| - 7.3e-30 104.0 0.0 1.4e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|219850961|ref|YP_002465393.1| - 4.4e-29 101.0 0.0 3.3e-28 98.2 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|219850961|ref|YP_002465393.1| - 7.1e-24 83.8 0.0 1.3e-23 83.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 HypA PF01155.14 gi|219850961|ref|YP_002465393.1| - 0.12 12.1 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family tRNA-synt_1d PF00750.14 gi|219850962|ref|YP_002465394.1| - 2.6e-51 174.5 0.0 3.5e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|219850962|ref|YP_002465394.1| - 5.9e-29 100.4 0.0 1.5e-28 99.1 0.0 1.7 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|219850962|ref|YP_002465394.1| - 2.2e-11 44.1 0.3 2.5e-10 40.7 0.0 2.8 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|219850962|ref|YP_002465394.1| - 1.6e-06 27.0 0.0 0.017 13.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|219850962|ref|YP_002465394.1| - 8.9e-05 21.3 0.1 0.026 13.1 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|219850962|ref|YP_002465394.1| - 0.00024 20.3 0.0 0.0008 18.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|219850962|ref|YP_002465394.1| - 0.013 13.5 0.0 0.02 12.9 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Wyosine_form PF08608.7 gi|219850963|ref|YP_002465395.1| - 1.1e-20 73.4 0.0 2.2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|219850963|ref|YP_002465395.1| - 1.6e-17 64.2 0.1 7.8e-17 61.9 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219850963|ref|YP_002465395.1| - 0.025 14.6 0.2 0.086 12.8 0.1 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain tRNA-synt_2d PF01409.15 gi|219850964|ref|YP_002465396.1| - 1.3e-51 175.1 0.0 1.1e-48 165.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|219850964|ref|YP_002465396.1| - 0.0006 19.4 0.0 0.0017 17.9 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF128 PF01995.11 gi|219850965|ref|YP_002465397.1| - 5.8e-73 244.7 0.1 7.1e-73 244.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|219850965|ref|YP_002465397.1| - 6.9e-20 70.5 0.2 1.6e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|219850965|ref|YP_002465397.1| - 0.044 13.2 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e SelB-wing_3 PF09107.6 gi|219850965|ref|YP_002465397.1| - 0.075 12.4 0.1 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix dUTPase PF00692.14 gi|219850966|ref|YP_002465398.1| - 1e-17 63.8 0.0 1.3e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|219850966|ref|YP_002465398.1| - 0.00091 17.7 0.4 0.094 11.0 0.1 2.5 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HisK_N PF09385.5 gi|219850967|ref|YP_002465399.1| - 0.69 9.5 7.7 0.062 12.9 1.4 2.1 2 1 0 2 2 2 0 Histidine kinase N terminal IncA PF04156.9 gi|219850967|ref|YP_002465399.1| - 2 7.9 40.6 12 5.4 21.1 3.0 1 1 2 3 3 3 0 IncA protein DUF3635 PF12330.3 gi|219850967|ref|YP_002465399.1| - 9.6 6.3 10.1 2.1 8.4 0.1 3.8 2 1 2 4 4 4 0 Domain of unknown function (DUF3635) DUF373 PF04123.8 gi|219850968|ref|YP_002465400.1| - 1.4e-109 366.3 12.9 1.7e-109 366.0 8.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) GyrI-like PF06445.10 gi|219850970|ref|YP_002465402.1| - 1.7e-13 50.8 0.0 1.8e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain MerR PF00376.18 gi|219850970|ref|YP_002465402.1| - 7.6e-05 22.1 0.1 0.0002 20.8 0.0 1.7 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|219850970|ref|YP_002465402.1| - 0.003 17.2 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein Cass2 PF14526.1 gi|219850970|ref|YP_002465402.1| - 0.0056 16.6 0.0 0.0067 16.4 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein MMR_HSR1_C PF08438.5 gi|219850971|ref|YP_002465403.1| - 3.2e-27 94.9 0.0 1.6e-26 92.6 0.0 2.0 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|219850971|ref|YP_002465403.1| - 4.4e-17 62.1 0.0 1.2e-16 60.7 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|219850971|ref|YP_002465403.1| - 3.5e-14 52.3 0.1 1.9e-13 49.9 0.0 2.2 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|219850971|ref|YP_002465403.1| - 2.1e-10 40.1 0.2 8.2e-09 34.9 0.0 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B Arf PF00025.16 gi|219850971|ref|YP_002465403.1| - 0.098 11.8 0.3 5 6.3 0.1 3.0 3 0 0 3 3 3 0 ADP-ribosylation factor family HSP20 PF00011.16 gi|219850972|ref|YP_002465404.1| - 5.3e-13 48.7 0.1 6.5e-13 48.4 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|219850972|ref|YP_002465404.1| - 0.061 12.9 0.3 0.12 11.9 0.2 1.5 1 1 0 2 2 2 0 GvpH Radical_SAM PF04055.16 gi|219850973|ref|YP_002465405.1| - 5.5e-18 65.6 0.1 7.4e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219850973|ref|YP_002465405.1| - 5.8e-05 23.1 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219850973|ref|YP_002465405.1| - 0.00037 20.6 0.0 0.00071 19.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rubrerythrin PF02915.12 gi|219850974|ref|YP_002465406.1| - 1.1e-18 67.8 5.2 8e-18 65.0 3.6 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|219850974|ref|YP_002465406.1| - 1.7e-05 24.6 0.6 2.5e-05 24.0 0.4 1.2 1 0 0 1 1 1 1 Ferritin-like domain Desulfoferrod_N PF06397.7 gi|219850974|ref|YP_002465406.1| - 0.019 14.3 0.1 0.019 14.3 0.1 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-P11 PF03854.9 gi|219850974|ref|YP_002465406.1| - 0.021 14.2 0.1 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 P-11 zinc finger RecR PF02132.10 gi|219850974|ref|YP_002465406.1| - 0.029 13.8 1.2 0.029 13.8 0.8 1.9 2 0 0 2 2 2 0 RecR protein FdhE PF04216.7 gi|219850974|ref|YP_002465406.1| - 0.11 12.1 0.1 0.11 12.1 0.1 1.6 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DUF4428 PF14471.1 gi|219850974|ref|YP_002465406.1| - 0.12 12.1 2.4 0.89 9.3 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Cys_rich_CPCC PF14206.1 gi|219850974|ref|YP_002465406.1| - 0.17 11.4 1.2 0.4 10.2 0.8 1.6 1 0 0 1 1 1 0 Cysteine-rich CPCC Rubredoxin PF00301.15 gi|219850974|ref|YP_002465406.1| - 0.5 10.2 2.8 17 5.3 1.9 2.4 1 1 1 2 2 2 0 Rubredoxin Phasin_2 PF09361.5 gi|219850974|ref|YP_002465406.1| - 0.54 10.3 4.6 2.8 8.0 0.2 2.2 1 1 1 2 2 2 0 Phasin protein TF_Zn_Ribbon PF08271.7 gi|219850974|ref|YP_002465406.1| - 1.6 8.0 5.5 5.9 6.2 2.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding RadC PF04002.10 gi|219850975|ref|YP_002465407.1| - 1.8e-38 131.0 0.0 2.5e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.1 gi|219850975|ref|YP_002465407.1| - 0.00045 19.7 0.1 0.0013 18.2 0.0 1.9 2 1 0 2 2 2 1 Prokaryotic homologs of the JAB domain FMN_red PF03358.10 gi|219850976|ref|YP_002465408.1| - 4.5e-19 68.4 0.0 6.4e-19 67.9 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219850976|ref|YP_002465408.1| - 1.1e-09 38.0 0.0 1.4e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1451 PF07295.6 gi|219850977|ref|YP_002465409.1| - 2.3e-06 27.4 3.2 2.9e-06 27.1 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) HypA PF01155.14 gi|219850977|ref|YP_002465409.1| - 0.0012 18.4 1.7 0.0013 18.4 1.2 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|219850977|ref|YP_002465409.1| - 0.0017 17.7 6.5 0.036 13.5 4.5 2.2 1 1 0 1 1 1 1 A2L zinc ribbon domain DUF2082 PF09855.4 gi|219850977|ref|YP_002465409.1| - 0.11 12.3 2.6 0.63 9.9 0.2 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.2 gi|219850977|ref|YP_002465409.1| - 0.39 10.5 6.8 0.76 9.6 3.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|219850977|ref|YP_002465409.1| - 0.48 10.3 0.1 0.48 10.3 0.1 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|219850977|ref|YP_002465409.1| - 0.51 9.6 0.2 0.51 9.6 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|219850977|ref|YP_002465409.1| - 0.53 9.7 6.2 1.6 8.2 4.3 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|219850977|ref|YP_002465409.1| - 0.61 10.0 9.3 1.1 9.2 6.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|219850977|ref|YP_002465409.1| - 7.1 6.3 9.7 17 5.1 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|219850978|ref|YP_002465410.1| - 7.5e-17 60.4 9.0 8.2e-17 60.2 6.2 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-Sec23_Sec24 PF04810.10 gi|219850978|ref|YP_002465410.1| - 0.01 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Sec23/Sec24 zinc finger TF_Zn_Ribbon PF08271.7 gi|219850978|ref|YP_002465410.1| - 0.97 8.8 6.8 0.16 11.3 1.2 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding RRN7 PF11781.3 gi|219850978|ref|YP_002465410.1| - 1.1 8.8 3.6 2.3 7.7 2.5 1.6 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 CMD PF02627.15 gi|219850979|ref|YP_002465411.1| - 1.1e-15 57.1 2.2 1.4e-15 56.9 1.5 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family FlaC_arch PF05377.6 gi|219850979|ref|YP_002465411.1| - 0.05 13.5 0.1 0.095 12.6 0.0 1.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) EzrA PF06160.7 gi|219850979|ref|YP_002465411.1| - 0.08 11.1 0.1 0.18 9.9 0.0 1.5 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA AhpC-TSA PF00578.16 gi|219850980|ref|YP_002465412.1| - 8e-37 125.6 0.0 1.1e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|219850980|ref|YP_002465412.1| - 5.7e-19 68.0 0.0 1.2e-18 67.0 0.0 1.4 1 1 1 2 2 2 1 Redoxin 1-cysPrx_C PF10417.4 gi|219850980|ref|YP_002465412.1| - 2.6e-15 55.7 1.5 4.2e-15 55.1 1.1 1.3 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin FMN_red PF03358.10 gi|219850981|ref|YP_002465413.1| - 9.7e-19 67.3 0.0 1.5e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219850981|ref|YP_002465413.1| - 2.2e-10 40.4 0.0 2.8e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|219850982|ref|YP_002465414.1| - 2.1e-16 59.7 0.0 2.5e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219850982|ref|YP_002465414.1| - 1.9e-09 37.3 0.0 2.5e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold CTP_transf_2 PF01467.21 gi|219850983|ref|YP_002465415.1| - 1.3e-16 61.0 0.0 1.6e-16 60.7 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|219850983|ref|YP_002465415.1| - 0.077 12.6 0.0 0.26 10.9 0.0 1.9 1 1 0 1 1 1 0 FAD synthetase Prok-JAB PF14464.1 gi|219850984|ref|YP_002465416.1| - 4.6e-10 39.0 0.0 5.7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|219850984|ref|YP_002465416.1| - 0.096 12.3 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain SIS PF01380.17 gi|219850985|ref|YP_002465417.1| - 1e-53 180.3 0.5 1.2e-26 92.8 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|219850985|ref|YP_002465417.1| - 1.2e-23 83.4 0.1 2.5e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|219850985|ref|YP_002465417.1| - 1.2e-20 73.5 0.1 4.6e-15 55.1 0.0 2.7 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|219850985|ref|YP_002465417.1| - 3.3e-20 72.0 0.0 5.5e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|219850985|ref|YP_002465417.1| - 0.00023 19.9 0.1 0.00042 19.0 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|219850985|ref|YP_002465417.1| - 0.016 14.9 0.1 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 SIS domain NTP_transferase PF00483.18 gi|219850986|ref|YP_002465418.1| - 1.2e-33 116.5 0.0 1.6e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|219850986|ref|YP_002465418.1| - 4.4e-19 67.0 13.2 1.5e-09 36.8 2.6 4.7 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|219850986|ref|YP_002465418.1| - 3.6e-16 59.6 0.0 5.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|219850986|ref|YP_002465418.1| - 2e-11 43.2 10.4 8.2e-07 28.4 0.1 4.8 4 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|219850986|ref|YP_002465418.1| - 4.6e-05 23.0 0.3 7.5e-05 22.3 0.2 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Frigida PF07899.6 gi|219850986|ref|YP_002465418.1| - 0.06 12.1 0.0 0.13 10.9 0.0 1.4 1 1 0 1 1 1 0 Frigida-like protein NTP_transferase PF00483.18 gi|219850987|ref|YP_002465419.1| - 9.2e-32 110.2 0.0 1.1e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|219850987|ref|YP_002465419.1| - 5.8e-22 76.1 23.0 1.3e-09 37.0 0.3 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|219850987|ref|YP_002465419.1| - 2.2e-12 47.3 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|219850987|ref|YP_002465419.1| - 9.3e-10 37.9 20.3 1.5e-06 27.6 0.1 4.6 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|219850987|ref|YP_002465419.1| - 0.00022 20.8 0.0 0.00034 20.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|219850988|ref|YP_002465420.1| - 1e-28 99.5 0.0 1.9e-28 98.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|219850988|ref|YP_002465420.1| - 2.2e-19 69.6 0.0 4.4e-19 68.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|219850988|ref|YP_002465420.1| - 8.9e-14 51.4 0.0 1.9e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|219850988|ref|YP_002465420.1| - 5.2e-10 39.1 0.1 1.3e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cyclase PF04199.8 gi|219850990|ref|YP_002465422.1| - 5.1e-29 101.1 0.0 6.4e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PCMT PF01135.14 gi|219850991|ref|YP_002465423.1| - 1.3e-58 198.0 0.0 1.5e-58 197.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|219850991|ref|YP_002465423.1| - 1e-06 29.3 0.0 1.4e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219850991|ref|YP_002465423.1| - 1.1e-05 25.1 0.0 1.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219850991|ref|YP_002465423.1| - 1.7e-05 24.8 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|219850991|ref|YP_002465423.1| - 3.1e-05 23.1 0.0 5.9e-05 22.2 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|219850991|ref|YP_002465423.1| - 5.4e-05 22.9 0.0 8.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219850991|ref|YP_002465423.1| - 0.012 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|219850991|ref|YP_002465423.1| - 0.094 13.0 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|219850991|ref|YP_002465423.1| - 0.12 11.8 0.1 0.21 11.0 0.0 1.4 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit DUF883 PF05957.8 gi|219850992|ref|YP_002465424.1| - 0.033 14.5 4.6 0.83 10.0 0.6 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HisKA_3 PF07730.8 gi|219850992|ref|YP_002465424.1| - 0.12 12.7 0.2 0.82 10.0 0.1 1.9 1 1 1 2 2 2 0 Histidine kinase DUF1328 PF07043.8 gi|219850993|ref|YP_002465425.1| - 2e-09 37.2 18.0 2e-09 37.2 12.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1328) DUF420 PF04238.7 gi|219850993|ref|YP_002465425.1| - 0.11 12.4 3.1 0.12 12.3 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF3784 PF12650.2 gi|219850993|ref|YP_002465425.1| - 1.2 9.1 9.7 1.5 8.8 6.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) PalH PF08733.5 gi|219850993|ref|YP_002465425.1| - 3.2 6.5 6.1 3.2 6.5 4.2 1.0 1 0 0 1 1 1 0 PalH/RIM21 Phage_NinH PF06322.6 gi|219850994|ref|YP_002465426.1| - 0.29 10.7 1.2 0.46 10.1 0.4 1.6 2 0 0 2 2 2 0 Phage NinH protein DUF883 PF05957.8 gi|219850994|ref|YP_002465426.1| - 0.35 11.2 2.0 3.9 7.9 0.1 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF1328 PF07043.8 gi|219850995|ref|YP_002465427.1| - 1.4e-09 37.7 18.3 1.9e-09 37.3 12.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF420 PF04238.7 gi|219850995|ref|YP_002465427.1| - 0.058 13.3 2.5 0.063 13.2 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF3784 PF12650.2 gi|219850995|ref|YP_002465427.1| - 0.91 9.5 10.2 1.1 9.2 7.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Amastin PF07344.6 gi|219850995|ref|YP_002465427.1| - 1.2 8.7 5.3 1.3 8.6 3.7 1.1 1 0 0 1 1 1 0 Amastin surface glycoprotein PalH PF08733.5 gi|219850995|ref|YP_002465427.1| - 2.5 6.8 6.2 2.5 6.8 4.3 1.0 1 0 0 1 1 1 0 PalH/RIM21 PrgI PF12666.2 gi|219850995|ref|YP_002465427.1| - 3.6 7.7 9.1 4.1 7.6 6.3 1.1 1 0 0 1 1 1 0 PrgI family protein DUF3007 PF11460.3 gi|219850995|ref|YP_002465427.1| - 8.8 6.4 6.5 9.8 6.3 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF553 PF04473.7 gi|219850996|ref|YP_002465428.1| - 0.097 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain Hydrolase_6 PF13344.1 gi|219850997|ref|YP_002465429.1| - 4.6e-19 68.1 0.0 9.6e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|219850997|ref|YP_002465429.1| - 2.1e-15 56.1 0.1 5.2e-15 54.9 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|219850997|ref|YP_002465429.1| - 1e-11 45.7 0.1 7.1e-10 39.6 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|219850997|ref|YP_002465429.1| - 1.1e-11 45.2 0.0 4.6e-07 30.2 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase GATase PF00117.23 gi|219850998|ref|YP_002465430.1| - 5.3e-16 58.6 0.0 7.2e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|219850998|ref|YP_002465430.1| - 1.2e-07 31.3 0.0 9.5e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|219850998|ref|YP_002465430.1| - 0.0014 18.2 0.1 0.0038 16.8 0.0 1.6 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Bac_luciferase PF00296.15 gi|219851000|ref|YP_002465432.1| - 3.2e-49 167.7 0.0 3.6e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.17 gi|219851000|ref|YP_002465432.1| - 0.01 16.3 0.1 0.23 11.9 0.0 2.6 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold MTD PF01993.13 gi|219851002|ref|YP_002465434.1| - 2.3e-105 351.6 3.5 2.6e-105 351.4 2.4 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TFX_C PF14601.1 gi|219851003|ref|YP_002465435.1| - 3.9e-31 106.6 0.0 6e-31 106.0 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|219851003|ref|YP_002465435.1| - 4.3e-09 35.5 0.7 8.9e-09 34.5 0.5 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|219851003|ref|YP_002465435.1| - 6.1e-07 28.6 0.5 9.6e-07 28.0 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|219851003|ref|YP_002465435.1| - 0.00023 20.5 0.2 0.00065 19.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|219851003|ref|YP_002465435.1| - 0.00047 19.6 0.2 0.0013 18.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|219851003|ref|YP_002465435.1| - 0.029 14.2 0.2 0.076 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|219851003|ref|YP_002465435.1| - 0.039 13.6 0.2 0.085 12.5 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain UPF0122 PF04297.9 gi|219851003|ref|YP_002465435.1| - 0.077 13.0 0.7 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like CPSase_L_D3 PF02787.14 gi|219851003|ref|YP_002465435.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TFIIB PF00382.14 gi|219851004|ref|YP_002465436.1| - 4.3e-46 154.5 2.2 3.5e-24 84.4 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|219851004|ref|YP_002465436.1| - 3.7e-19 67.7 0.6 9.7e-19 66.4 0.4 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|219851004|ref|YP_002465436.1| - 7.6e-06 25.1 0.9 0.0031 16.7 0.2 3.3 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|219851004|ref|YP_002465436.1| - 0.0013 18.3 0.9 0.0028 17.2 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_AsnC-type PF13404.1 gi|219851004|ref|YP_002465436.1| - 0.0062 16.0 1.3 0.034 13.6 0.1 2.8 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain RPA_interact_C PF14768.1 gi|219851004|ref|YP_002465436.1| - 0.0098 16.2 0.4 0.74 10.2 0.1 2.4 2 0 0 2 2 2 1 Replication protein A interacting C-terminal HTH_24 PF13412.1 gi|219851004|ref|YP_002465436.1| - 0.015 14.6 0.2 0.11 11.8 0.1 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|219851004|ref|YP_002465436.1| - 0.028 14.2 0.4 1.7 8.5 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix Ribosomal_S27e PF01667.12 gi|219851004|ref|YP_002465436.1| - 0.032 13.7 0.4 0.032 13.7 0.3 1.7 2 0 0 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|219851004|ref|YP_002465436.1| - 0.038 13.8 1.3 0.14 11.9 0.2 2.2 2 0 0 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|219851004|ref|YP_002465436.1| - 0.038 13.4 1.4 0.11 12.0 1.0 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|219851004|ref|YP_002465436.1| - 0.058 12.6 0.5 0.058 12.6 0.4 2.0 2 1 0 2 2 1 0 zinc-ribbon domain GFA PF04828.9 gi|219851004|ref|YP_002465436.1| - 0.066 13.1 0.1 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme UPF0253 PF06786.7 gi|219851004|ref|YP_002465436.1| - 0.077 13.1 0.7 0.76 9.9 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Sigma70_r4_2 PF08281.7 gi|219851004|ref|YP_002465436.1| - 0.078 12.4 0.7 0.61 9.5 0.1 2.7 2 2 0 2 2 2 0 Sigma-70, region 4 HTH_31 PF13560.1 gi|219851004|ref|YP_002465436.1| - 0.1 12.7 6.0 1.1 9.4 0.2 3.7 3 1 0 3 3 3 0 Helix-turn-helix domain zf-CHY PF05495.7 gi|219851004|ref|YP_002465436.1| - 0.12 12.5 4.0 0.14 12.2 1.5 1.9 2 0 0 2 2 2 0 CHY zinc finger Cyclin_C PF02984.14 gi|219851004|ref|YP_002465436.1| - 0.15 11.9 0.0 14 5.6 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain DUF4182 PF13790.1 gi|219851004|ref|YP_002465436.1| - 5 7.0 5.6 17 5.3 0.3 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF4182) HTH_23 PF13384.1 gi|219851004|ref|YP_002465436.1| - 5.1 6.8 7.7 1 9.1 0.1 3.6 3 1 0 3 3 3 0 Homeodomain-like domain zf-B_box PF00643.19 gi|219851004|ref|YP_002465436.1| - 7.4 6.5 6.8 4.4 7.2 2.0 2.4 2 1 0 2 2 2 0 B-box zinc finger Gar1 PF04410.9 gi|219851005|ref|YP_002465437.1| - 3e-08 33.2 0.0 3.2e-08 33.1 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Ins_beta PF03488.9 gi|219851005|ref|YP_002465437.1| - 0.12 12.1 1.0 11 5.8 0.0 2.2 2 0 0 2 2 2 0 Nematode insulin-related peptide beta type PHP PF02811.14 gi|219851006|ref|YP_002465438.1| - 6.2e-08 32.6 0.1 1.1e-06 28.5 0.0 1.9 1 1 1 2 2 2 1 PHP domain RNase_P_p30 PF01876.11 gi|219851006|ref|YP_002465438.1| - 0.00072 18.8 0.3 0.014 14.6 0.2 2.2 1 1 0 1 1 1 1 RNase P subunit p30 PHP_C PF13263.1 gi|219851006|ref|YP_002465438.1| - 0.055 12.9 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 PHP-associated SRP19 PF01922.12 gi|219851007|ref|YP_002465439.1| - 6.9e-16 58.6 0.0 7.6e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein cobW PF02492.14 gi|219851008|ref|YP_002465440.1| - 1.3e-32 112.6 0.0 1.6e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|219851008|ref|YP_002465440.1| - 1.8e-06 26.9 0.7 0.0026 16.5 0.0 2.1 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|219851008|ref|YP_002465440.1| - 0.0003 20.5 0.0 0.00085 19.0 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|219851008|ref|YP_002465440.1| - 0.0031 17.5 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain PduV-EutP PF10662.4 gi|219851008|ref|YP_002465440.1| - 0.0033 16.9 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|219851008|ref|YP_002465440.1| - 0.0057 16.1 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|219851008|ref|YP_002465440.1| - 0.0088 15.5 0.0 0.015 14.7 0.0 1.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|219851008|ref|YP_002465440.1| - 0.15 11.5 0.1 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|219851008|ref|YP_002465440.1| - 0.17 11.5 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Ribosomal_S8e PF01201.17 gi|219851009|ref|YP_002465441.1| - 2.8e-37 127.7 2.8 3.1e-37 127.6 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Toxin_61 PF15538.1 gi|219851009|ref|YP_002465441.1| - 0.091 12.7 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative toxin 61 DUF2240 PF09999.4 gi|219851010|ref|YP_002465442.1| - 2.6e-36 124.1 0.0 3e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_S6e PF01092.14 gi|219851011|ref|YP_002465443.1| - 1e-29 102.7 0.1 1.1e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e YqcI_YcgG PF08892.6 gi|219851011|ref|YP_002465443.1| - 0.17 11.4 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 YqcI/YcgG family GTP_EFTU PF00009.22 gi|219851012|ref|YP_002465444.1| - 5.4e-34 117.2 0.0 1.1e-33 116.2 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|219851012|ref|YP_002465444.1| - 2.6e-19 69.1 1.7 3.8e-19 68.5 0.2 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|219851012|ref|YP_002465444.1| - 2.5e-12 46.2 0.6 2.5e-12 46.2 0.4 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|219851012|ref|YP_002465444.1| - 1.1e-10 41.4 3.7 4.6e-08 33.0 0.0 2.9 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|219851012|ref|YP_002465444.1| - 1.2e-06 28.4 0.0 3.7e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|219851012|ref|YP_002465444.1| - 0.00068 19.2 0.0 0.0019 17.7 0.0 1.8 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|219851012|ref|YP_002465444.1| - 0.002 17.9 0.3 0.11 12.3 0.0 2.6 1 1 0 2 2 2 1 Dynamin family Miro PF08477.8 gi|219851012|ref|YP_002465444.1| - 0.015 15.7 0.0 0.037 14.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|219851012|ref|YP_002465444.1| - 0.053 13.0 0.0 1.8 8.0 0.0 3.0 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Tir_receptor_N PF07490.6 gi|219851012|ref|YP_002465444.1| - 0.081 12.5 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus Lipid_bd PF12888.2 gi|219851013|ref|YP_002465445.1| - 2.4 8.0 7.5 12 5.7 0.5 3.0 2 2 0 2 2 2 0 Lipid-binding putative hydrolase TrbC PF04956.8 gi|219851013|ref|YP_002465445.1| - 4.9 7.2 6.3 9.1 6.3 0.2 3.0 3 0 0 3 3 3 0 TrbC/VIRB2 family FlgD_ig PF13860.1 gi|219851014|ref|YP_002465446.1| - 0.089 12.5 3.6 0.13 12.0 0.5 2.9 2 2 1 3 3 3 0 FlgD Ig-like domain PQQ_3 PF13570.1 gi|219851015|ref|YP_002465447.1| - 7.6e-07 29.2 21.3 0.015 15.5 0.0 6.4 5 1 2 7 7 7 4 PQQ-like domain PQQ PF01011.16 gi|219851015|ref|YP_002465447.1| - 0.0055 16.1 2.1 0.61 9.7 0.3 4.2 3 0 0 3 3 3 1 PQQ enzyme repeat WD40 PF00400.27 gi|219851015|ref|YP_002465447.1| - 0.015 15.1 9.5 3.9 7.5 0.1 5.6 7 0 0 7 7 7 0 WD domain, G-beta repeat Arylsulfotrans PF05935.6 gi|219851015|ref|YP_002465447.1| - 0.099 11.1 0.0 0.099 11.1 0.0 2.9 2 1 1 3 3 3 0 Arylsulfotransferase (ASST) Glycos_transf_2 PF00535.21 gi|219851017|ref|YP_002465449.1| - 0.00015 21.5 0.0 0.0002 21.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Epimerase_2 PF02350.14 gi|219851018|ref|YP_002465450.1| - 4.3e-112 374.3 0.0 5e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|219851018|ref|YP_002465450.1| - 2.1e-06 26.8 0.0 3.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|219851018|ref|YP_002465450.1| - 0.17 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Epimerase PF01370.16 gi|219851019|ref|YP_002465451.1| - 9.9e-42 142.9 0.1 1.2e-41 142.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|219851019|ref|YP_002465451.1| - 4.8e-17 61.7 0.1 3e-13 49.3 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|219851019|ref|YP_002465451.1| - 1.7e-13 50.1 0.0 2e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|219851019|ref|YP_002465451.1| - 1.5e-12 46.8 0.0 2.6e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|219851019|ref|YP_002465451.1| - 7.5e-09 35.8 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|219851019|ref|YP_002465451.1| - 1.1e-06 27.8 0.0 0.0001 21.3 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|219851019|ref|YP_002465451.1| - 7.3e-05 22.7 0.0 0.0026 17.6 0.0 2.2 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|219851019|ref|YP_002465451.1| - 0.069 12.8 0.1 0.38 10.3 0.1 1.9 1 1 1 2 2 2 0 KR domain Glyco_transf_4 PF13439.1 gi|219851019|ref|YP_002465451.1| - 0.08 12.6 0.1 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 NAD_binding_2 PF03446.10 gi|219851019|ref|YP_002465451.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|219851019|ref|YP_002465451.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.16 gi|219851020|ref|YP_002465452.1| - 5.4e-53 179.8 0.0 6.7e-53 179.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|219851020|ref|YP_002465452.1| - 2.8e-17 62.5 0.0 6.4e-13 48.2 0.0 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|219851020|ref|YP_002465452.1| - 5e-16 58.2 0.0 7.4e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|219851020|ref|YP_002465452.1| - 4.2e-12 45.5 0.0 9.8e-12 44.3 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|219851020|ref|YP_002465452.1| - 1.3e-08 34.9 0.0 2.1e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|219851020|ref|YP_002465452.1| - 7.5e-08 31.5 0.0 1.4e-06 27.4 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|219851020|ref|YP_002465452.1| - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|219851020|ref|YP_002465452.1| - 3.3e-05 23.6 0.0 8.3e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|219851020|ref|YP_002465452.1| - 0.00074 18.8 0.0 0.0017 17.6 0.0 1.6 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|219851020|ref|YP_002465452.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Oxidored_nitro PF00148.14 gi|219851020|ref|YP_002465452.1| - 0.064 11.8 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ThiF PF00899.16 gi|219851020|ref|YP_002465452.1| - 0.19 11.5 0.5 0.6 9.9 0.2 1.8 2 0 0 2 2 2 0 ThiF family Glycos_transf_1 PF00534.15 gi|219851021|ref|YP_002465453.1| - 7.1e-18 64.6 0.0 1.7e-17 63.3 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851021|ref|YP_002465453.1| - 9.1e-18 64.7 0.0 1.8e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219851021|ref|YP_002465453.1| - 6.1e-16 58.9 0.9 1e-15 58.2 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|219851021|ref|YP_002465453.1| - 3e-07 30.3 0.1 3.4e-06 26.8 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|219851021|ref|YP_002465453.1| - 2.6e-06 27.5 0.0 7e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_11 PF08241.7 gi|219851022|ref|YP_002465454.1| - 5.7e-14 52.3 0.0 9.3e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851022|ref|YP_002465454.1| - 6.9e-11 41.9 0.7 9.7e-11 41.4 0.5 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851022|ref|YP_002465454.1| - 1.1e-07 31.2 0.0 1.3e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|219851022|ref|YP_002465454.1| - 1e-06 29.0 0.0 1.7e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851022|ref|YP_002465454.1| - 1.8e-06 28.2 0.0 3.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851022|ref|YP_002465454.1| - 2.3e-06 27.4 0.1 3.2e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851022|ref|YP_002465454.1| - 1.6e-05 25.4 0.0 2.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851022|ref|YP_002465454.1| - 0.00061 19.8 0.0 0.00093 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219851022|ref|YP_002465454.1| - 0.0041 16.5 0.0 0.006 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PA PF02225.17 gi|219851022|ref|YP_002465454.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 PA domain Methyltransf_9 PF08003.6 gi|219851022|ref|YP_002465454.1| - 0.15 10.7 0.0 0.21 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF362 PF04015.7 gi|219851023|ref|YP_002465455.1| - 1.4e-47 161.8 0.1 2.4e-47 161.1 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF362) Methyltransf_21 PF05050.7 gi|219851024|ref|YP_002465456.1| - 2.2e-26 92.7 0.0 2.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|219851024|ref|YP_002465456.1| - 8.1e-06 25.0 0.1 1.1e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|219851024|ref|YP_002465456.1| - 0.00025 21.5 0.0 0.00036 21.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|219851024|ref|YP_002465456.1| - 0.0021 17.7 0.1 0.0028 17.2 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Glycos_transf_2 PF00535.21 gi|219851025|ref|YP_002465457.1| - 4.4e-24 85.0 0.1 6.6e-24 84.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219851025|ref|YP_002465457.1| - 2.4e-20 73.3 0.0 3.7e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|219851025|ref|YP_002465457.1| - 3.5e-11 42.7 1.1 5.2e-10 38.8 0.7 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|219851025|ref|YP_002465457.1| - 1e-07 31.8 0.0 1.4e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|219851025|ref|YP_002465457.1| - 0.0033 16.7 0.0 0.005 16.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|219851025|ref|YP_002465457.1| - 0.0039 16.4 0.2 0.023 13.9 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family Glyco_transf_7C PF02709.9 gi|219851025|ref|YP_002465457.1| - 0.013 14.9 0.2 0.027 13.9 0.1 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|219851025|ref|YP_002465457.1| - 0.033 14.4 0.0 0.058 13.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|219851026|ref|YP_002465458.1| - 1.4e-36 125.4 0.0 2.1e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219851026|ref|YP_002465458.1| - 3.2e-16 59.5 0.0 6.4e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|219851026|ref|YP_002465458.1| - 4.4e-15 56.1 0.0 5.8e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|219851026|ref|YP_002465458.1| - 5.5e-12 45.9 0.0 1.2e-11 44.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|219851026|ref|YP_002465458.1| - 1.6e-06 28.3 0.0 7.3e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|219851026|ref|YP_002465458.1| - 1.2e-05 25.1 0.7 2.8e-05 23.9 0.5 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|219851026|ref|YP_002465458.1| - 0.00096 18.7 0.8 0.071 12.5 0.5 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Tn7_Tnp_TnsA_N PF08722.6 gi|219851026|ref|YP_002465458.1| - 0.14 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 TnsA endonuclease N terminal Methyltransf_23 PF13489.1 gi|219851027|ref|YP_002465459.1| - 2.7e-05 23.9 0.2 3.8e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851027|ref|YP_002465459.1| - 5.8e-05 23.5 0.0 0.00017 22.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851027|ref|YP_002465459.1| - 0.00076 19.0 0.1 0.0094 15.5 0.0 2.3 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851027|ref|YP_002465459.1| - 0.0019 18.6 0.0 0.012 16.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|219851028|ref|YP_002465460.1| - 9.5e-39 132.5 0.0 2.1e-38 131.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851028|ref|YP_002465460.1| - 4.3e-23 81.9 0.0 9e-23 80.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|219851028|ref|YP_002465460.1| - 1.5e-07 31.5 0.0 2.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 PMT_2 PF13231.1 gi|219851029|ref|YP_002465461.1| - 0.0026 17.6 15.2 0.0026 17.6 10.5 4.1 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase EKR PF10371.4 gi|219851030|ref|YP_002465462.1| - 0.07 12.7 0.3 0.1 12.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function Biotin_lipoyl PF00364.17 gi|219851030|ref|YP_002465462.1| - 0.14 11.8 0.1 0.18 11.4 0.1 1.3 1 1 0 1 1 1 0 Biotin-requiring enzyme Polysacc_synt PF01943.12 gi|219851031|ref|YP_002465463.1| - 1.6e-14 53.8 30.8 1.6e-14 53.8 21.3 3.2 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|219851031|ref|YP_002465463.1| - 5.4e-10 39.1 31.3 5.4e-10 39.1 21.7 3.2 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|219851031|ref|YP_002465463.1| - 2.7e-08 33.7 27.6 2.7e-08 33.7 19.1 4.9 1 1 3 4 4 4 1 Polysaccharide biosynthesis C-terminal domain PIRT PF15099.1 gi|219851031|ref|YP_002465463.1| - 3 7.0 10.8 0.76 9.0 2.9 2.8 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family Glycos_transf_1 PF00534.15 gi|219851032|ref|YP_002465464.1| - 3.9e-38 130.5 0.0 7.4e-38 129.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851032|ref|YP_002465464.1| - 1.3e-22 80.4 0.0 2.3e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219851032|ref|YP_002465464.1| - 3.3e-19 69.2 0.0 1.2e-18 67.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|219851032|ref|YP_002465464.1| - 1.3e-13 51.4 0.0 3.1e-13 50.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|219851032|ref|YP_002465464.1| - 1.1e-11 44.7 1.2 2.5e-11 43.5 0.8 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|219851032|ref|YP_002465464.1| - 2.2e-07 31.0 0.0 5.2e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3231 PF11553.3 gi|219851032|ref|YP_002465464.1| - 0.00077 19.0 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3231) UPF0102 PF02021.12 gi|219851037|ref|YP_002465469.1| - 0.057 13.3 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Prim_Zn_Ribbon PF08273.7 gi|219851038|ref|YP_002465470.1| - 0.049 13.7 8.4 0.7 10.0 0.9 3.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|219851038|ref|YP_002465470.1| - 0.31 11.3 6.3 1.8 8.9 2.3 3.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar HTH_3 PF01381.17 gi|219851039|ref|YP_002465471.1| - 0.003 17.3 0.1 0.0098 15.7 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix Cro PF09048.5 gi|219851039|ref|YP_002465471.1| - 0.0037 16.8 0.0 0.0079 15.8 0.0 1.5 1 0 0 1 1 1 1 Cro Sigma70_r4 PF04545.11 gi|219851039|ref|YP_002465471.1| - 0.019 14.2 0.0 0.057 12.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.1 gi|219851039|ref|YP_002465471.1| - 0.023 14.5 0.3 0.085 12.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|219851039|ref|YP_002465471.1| - 0.043 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LacI PF00356.16 gi|219851039|ref|YP_002465471.1| - 0.047 13.3 0.0 0.93 9.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_10 PF04967.7 gi|219851039|ref|YP_002465471.1| - 0.053 13.0 0.6 0.87 9.2 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_20 PF12840.2 gi|219851042|ref|YP_002465474.1| - 0.00022 20.9 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|219851042|ref|YP_002465474.1| - 0.00078 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|219851042|ref|YP_002465474.1| - 0.0019 18.1 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|219851042|ref|YP_002465474.1| - 0.0084 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HxlR PF01638.12 gi|219851042|ref|YP_002465474.1| - 0.0085 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|219851042|ref|YP_002465474.1| - 0.024 12.7 0.0 0.029 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR_2 PF12802.2 gi|219851042|ref|YP_002465474.1| - 0.03 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.1 gi|219851042|ref|YP_002465474.1| - 0.062 13.1 0.0 0.074 12.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_24 PF13412.1 gi|219851042|ref|YP_002465474.1| - 0.13 11.7 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0150 PF03681.10 gi|219851044|ref|YP_002465476.1| - 6.4e-16 57.7 0.0 9.1e-16 57.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Jag_N PF14804.1 gi|219851044|ref|YP_002465476.1| - 0.086 12.8 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Jag N-terminus Big_2 PF02368.13 gi|219851046|ref|YP_002465478.1| - 0.26 11.1 7.3 4.6 7.2 0.7 2.8 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 2) TIG PF01833.19 gi|219851046|ref|YP_002465478.1| - 1.4 8.9 6.5 1.1 9.2 1.9 2.5 1 1 1 2 2 2 0 IPT/TIG domain UPF0150 PF03681.10 gi|219851047|ref|YP_002465479.1| - 3.5e-10 39.3 0.0 4.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF457 PF04307.9 gi|219851049|ref|YP_002465481.1| - 2.8e-13 49.4 9.6 3.5e-13 49.1 6.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MadM PF03818.8 gi|219851049|ref|YP_002465481.1| - 0.019 14.5 6.1 0.63 9.6 0.1 3.0 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit DUF4153 PF13687.1 gi|219851050|ref|YP_002465482.1| - 0.011 15.3 5.1 0.011 15.3 3.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4153) DUF423 PF04241.10 gi|219851050|ref|YP_002465482.1| - 0.069 13.0 0.6 0.1 12.5 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) YwiC PF14256.1 gi|219851050|ref|YP_002465482.1| - 0.18 11.9 3.2 0.24 11.5 2.3 1.3 1 1 0 1 1 1 0 YwiC-like protein MRAP PF15183.1 gi|219851050|ref|YP_002465482.1| - 0.49 10.0 0.1 0.49 10.0 0.0 2.3 1 1 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Ceramidase PF05875.7 gi|219851050|ref|YP_002465482.1| - 0.79 8.8 6.5 0.79 8.7 4.5 1.0 1 0 0 1 1 1 0 Ceramidase Peptidase_M50B PF13398.1 gi|219851050|ref|YP_002465482.1| - 2.9 7.2 9.3 3 7.1 6.4 1.1 1 0 0 1 1 1 0 Peptidase M50B-like DUF1980 PF09323.5 gi|219851050|ref|YP_002465482.1| - 3.8 7.2 7.6 0.48 10.1 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) DAGK_prokar PF01219.14 gi|219851050|ref|YP_002465482.1| - 7.3 6.2 11.1 2 8.0 5.0 1.8 1 1 1 2 2 2 0 Prokaryotic diacylglycerol kinase DUF4129 PF13559.1 gi|219851051|ref|YP_002465483.1| - 1.3e-10 41.0 1.8 3.4e-10 39.7 1.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|219851051|ref|YP_002465483.1| - 2.3e-07 30.7 8.3 0.00052 20.0 0.4 3.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|219851051|ref|YP_002465483.1| - 0.00027 20.9 2.1 0.29 11.2 0.0 3.5 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|219851051|ref|YP_002465483.1| - 0.042 13.6 1.1 6.2 6.6 0.0 2.7 3 0 0 3 3 3 0 Cna protein B-type domain DUF1416 PF07210.7 gi|219851051|ref|YP_002465483.1| - 0.048 13.2 2.3 1.8 8.2 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1416) Big_1 PF02369.11 gi|219851051|ref|YP_002465483.1| - 0.1 12.5 3.2 0.12 12.3 0.9 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF4129 PF13559.1 gi|219851052|ref|YP_002465484.1| - 3.7e-07 30.0 0.4 7.4e-07 29.0 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|219851052|ref|YP_002465484.1| - 7.1e-05 22.7 3.8 0.00011 22.2 0.1 2.7 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain Imm37 PF15598.1 gi|219851052|ref|YP_002465484.1| - 0.0096 15.7 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 1 Immunity protein 37 DUF4350 PF14258.1 gi|219851053|ref|YP_002465485.1| - 7.9e-13 48.4 2.3 1.2e-12 47.8 0.1 2.4 3 1 0 3 3 3 1 Domain of unknown function (DUF4350) DUF1206 PF06724.6 gi|219851053|ref|YP_002465485.1| - 0.17 11.6 1.8 8.3 6.2 0.3 2.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) stn_TNFRSF12A PF12191.3 gi|219851053|ref|YP_002465485.1| - 0.75 9.8 3.4 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain DUF347 PF03988.7 gi|219851053|ref|YP_002465485.1| - 2.3 8.1 5.9 3.2 7.6 0.1 3.0 3 0 0 3 3 3 0 Repeat of Unknown Function (DUF347) AAA_3 PF07726.6 gi|219851054|ref|YP_002465486.1| - 6.4e-51 171.3 0.1 1.1e-50 170.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|219851054|ref|YP_002465486.1| - 3.5e-13 49.4 0.0 8.5e-13 48.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|219851054|ref|YP_002465486.1| - 7.1e-08 31.7 0.1 1.6e-07 30.6 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|219851054|ref|YP_002465486.1| - 6.2e-06 26.4 0.1 1.6e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|219851054|ref|YP_002465486.1| - 9.8e-06 24.5 0.0 0.00013 20.8 0.0 2.0 2 0 0 2 2 2 1 MCM2/3/5 family AAA_17 PF13207.1 gi|219851054|ref|YP_002465486.1| - 0.00094 19.9 1.1 0.017 15.9 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|219851054|ref|YP_002465486.1| - 0.0013 18.4 0.6 0.0034 17.1 0.4 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|219851054|ref|YP_002465486.1| - 0.0023 17.4 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF58 PF01882.13 gi|219851055|ref|YP_002465487.1| - 7.8e-10 38.7 0.0 1.5e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Pmp3 PF01679.12 gi|219851056|ref|YP_002465488.1| - 4.1 7.1 9.1 0.13 11.9 1.2 2.3 2 0 0 2 2 2 0 Proteolipid membrane potential modulator DUF308 PF03729.8 gi|219851057|ref|YP_002465489.1| - 0.27 11.2 6.8 0.49 10.4 4.7 1.4 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF1616 PF07760.6 gi|219851058|ref|YP_002465490.1| - 1.5e-99 332.7 2.6 1.7e-99 332.6 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) YTV PF07639.6 gi|219851058|ref|YP_002465490.1| - 0.051 13.2 2.3 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 YTV GATase_7 PF13537.1 gi|219851059|ref|YP_002465491.1| - 5.2e-22 77.8 0.0 8.6e-22 77.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|219851059|ref|YP_002465491.1| - 2.3e-21 76.1 0.0 4.1e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|219851059|ref|YP_002465491.1| - 1.1e-17 63.8 0.4 5.6e-13 48.3 0.0 3.1 2 1 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|219851059|ref|YP_002465491.1| - 3.4e-12 46.1 0.0 9.7e-12 44.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|219851059|ref|YP_002465491.1| - 6.7e-09 34.8 0.0 1e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|219851060|ref|YP_002465492.1| - 9.2e-26 89.4 13.1 1e-25 89.2 9.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|219851060|ref|YP_002465492.1| - 0.0018 18.0 1.2 0.0022 17.7 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon FYVE_2 PF02318.11 gi|219851060|ref|YP_002465492.1| - 0.0075 16.1 2.0 0.0081 16.0 1.4 1.1 1 0 0 1 1 1 1 FYVE-type zinc finger Ribosomal_L32p PF01783.18 gi|219851060|ref|YP_002465492.1| - 0.0082 16.2 1.8 0.014 15.5 1.3 1.5 1 0 0 1 1 1 1 Ribosomal L32p protein family DUF35_N PF12172.3 gi|219851060|ref|YP_002465492.1| - 0.011 15.5 3.1 0.016 15.1 2.2 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|219851060|ref|YP_002465492.1| - 0.057 12.6 2.4 0.11 11.6 1.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|219851060|ref|YP_002465492.1| - 0.061 13.1 0.9 0.08 12.7 0.7 1.3 1 0 0 1 1 1 0 Zinc-ribbon zf-piccolo PF05715.8 gi|219851060|ref|YP_002465492.1| - 0.067 13.2 0.9 0.13 12.2 0.6 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger FAM72 PF14976.1 gi|219851060|ref|YP_002465492.1| - 0.11 12.3 0.2 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 FAM72 protein HypA PF01155.14 gi|219851060|ref|YP_002465492.1| - 0.14 11.8 0.6 0.15 11.7 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|219851060|ref|YP_002465492.1| - 0.17 11.0 0.9 8.4 5.5 0.0 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.6 gi|219851060|ref|YP_002465492.1| - 0.31 10.7 4.1 0.39 10.4 2.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|219851060|ref|YP_002465492.1| - 0.37 10.3 2.9 1.9 8.0 2.2 1.9 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|219851060|ref|YP_002465492.1| - 0.43 10.2 0.2 0.43 10.2 0.2 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|219851060|ref|YP_002465492.1| - 0.73 9.5 6.7 2.1 8.0 0.5 2.2 1 1 1 2 2 2 0 Nudix N-terminal MraY_sig1 PF10555.4 gi|219851060|ref|YP_002465492.1| - 0.87 9.0 2.9 0.81 9.1 0.6 1.9 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zf-C2H2_3 PF13878.1 gi|219851060|ref|YP_002465492.1| - 0.95 9.0 5.4 4.7 6.8 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|219851061|ref|YP_002465493.1| - 2.8e-19 68.4 0.3 3.3e-19 68.2 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|219851061|ref|YP_002465493.1| - 0.0022 17.8 0.1 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.15 gi|219851062|ref|YP_002465494.1| - 3.2e-18 65.2 1.3 5.1e-18 64.5 0.9 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|219851062|ref|YP_002465494.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) DUF552 PF04472.7 gi|219851063|ref|YP_002465495.1| - 1.1e-18 66.9 1.9 1.6e-18 66.3 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|219851064|ref|YP_002465496.1| - 4.9e-40 136.3 0.0 5.7e-40 136.1 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|219851064|ref|YP_002465496.1| - 0.016 15.4 0.2 0.03 14.6 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|219851064|ref|YP_002465496.1| - 0.083 12.9 0.5 10 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2321 PF10083.4 gi|219851064|ref|YP_002465496.1| - 0.1 12.0 0.1 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) UPF0547 PF10571.4 gi|219851064|ref|YP_002465496.1| - 0.14 11.8 4.4 0.17 11.6 1.0 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|219851064|ref|YP_002465496.1| - 0.39 9.9 1.7 1.3 8.2 0.5 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger AIRS_C PF02769.17 gi|219851065|ref|YP_002465497.1| - 1.2e-20 74.1 0.0 2e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|219851065|ref|YP_002465497.1| - 7.2e-14 51.8 0.4 1.4e-13 50.8 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.23 gi|219851066|ref|YP_002465498.1| - 8.3e-52 176.1 0.1 1.6e-51 175.1 0.1 1.5 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.1 gi|219851066|ref|YP_002465498.1| - 1.1e-21 76.1 3.0 1.6e-10 40.3 0.2 3.2 4 0 0 4 4 4 2 ACT domain ACT PF01842.20 gi|219851066|ref|YP_002465498.1| - 3.6e-21 74.2 1.1 6.8e-11 41.4 0.3 3.1 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.5 gi|219851066|ref|YP_002465498.1| - 0.01 15.6 0.6 4.4 7.1 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF2007) ACT_6 PF13740.1 gi|219851066|ref|YP_002465498.1| - 0.015 14.9 0.4 0.13 12.0 0.1 2.4 2 0 0 2 2 2 0 ACT domain Nuc_rec_co-act PF08815.5 gi|219851066|ref|YP_002465498.1| - 0.054 13.0 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 Nuclear receptor coactivator FAD_binding_2 PF00890.19 gi|219851067|ref|YP_002465499.1| - 1e-88 297.9 4.9 1.4e-88 297.5 3.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|219851067|ref|YP_002465499.1| - 1.5e-18 66.8 0.0 3.2e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|219851067|ref|YP_002465499.1| - 1.9e-07 31.1 5.3 1.7e-05 24.8 3.4 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|219851067|ref|YP_002465499.1| - 6.1e-06 24.9 1.8 0.044 12.2 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|219851067|ref|YP_002465499.1| - 6.8e-06 25.4 3.6 1.6e-05 24.2 2.5 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|219851067|ref|YP_002465499.1| - 0.0021 17.0 6.6 0.28 10.0 4.6 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|219851067|ref|YP_002465499.1| - 0.0034 16.2 3.4 0.068 12.0 1.0 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|219851067|ref|YP_002465499.1| - 0.0037 16.3 2.6 0.91 8.5 0.1 3.2 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|219851067|ref|YP_002465499.1| - 0.04 12.9 1.9 2.7 6.9 0.6 2.2 2 0 0 2 2 2 0 FAD binding domain CCG PF02754.11 gi|219851068|ref|YP_002465500.1| - 1.1e-31 108.6 7.2 2.2e-15 56.4 0.0 3.2 3 0 0 3 3 2 2 Cysteine-rich domain Fer2_3 PF13085.1 gi|219851068|ref|YP_002465500.1| - 1.1e-24 86.3 0.0 2.8e-24 85.0 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|219851068|ref|YP_002465500.1| - 2.4e-08 33.8 8.5 2.4e-08 33.8 5.9 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|219851068|ref|YP_002465500.1| - 7.7e-07 28.8 0.4 4.1e-06 26.4 0.1 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|219851068|ref|YP_002465500.1| - 1.1e-06 28.7 8.5 1.1e-06 28.7 5.9 3.5 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851068|ref|YP_002465500.1| - 1.7e-06 28.2 18.6 3.3e-06 27.3 6.7 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851068|ref|YP_002465500.1| - 2.1e-06 27.4 9.2 2.1e-06 27.4 6.4 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851068|ref|YP_002465500.1| - 4.9e-06 26.7 7.2 4.9e-06 26.7 5.0 3.4 5 0 0 5 5 4 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851068|ref|YP_002465500.1| - 9.6e-06 25.9 20.2 0.0033 17.7 1.4 4.7 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851068|ref|YP_002465500.1| - 0.00061 19.5 3.7 0.00061 19.5 2.6 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219851068|ref|YP_002465500.1| - 0.00068 20.1 3.4 0.028 14.9 0.0 3.2 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4 PF00037.22 gi|219851068|ref|YP_002465500.1| - 0.00079 18.9 26.9 0.0022 17.5 2.3 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer2 PF00111.22 gi|219851068|ref|YP_002465500.1| - 0.0009 18.9 0.5 0.0009 18.9 0.4 2.3 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_4 PF12800.2 gi|219851068|ref|YP_002465500.1| - 0.0024 18.0 0.8 0.0024 18.0 0.6 4.8 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851068|ref|YP_002465500.1| - 0.041 13.7 1.3 0.041 13.7 0.9 4.4 5 1 0 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219851068|ref|YP_002465500.1| - 7.3 7.0 24.6 0.32 11.4 1.8 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain CBM_6 PF03422.10 gi|219851069|ref|YP_002465501.1| - 4.2e-20 72.1 9.6 2.9e-19 69.4 6.6 2.2 1 1 0 1 1 1 1 Carbohydrate binding module (family 6) Lipase_GDSL_2 PF13472.1 gi|219851069|ref|YP_002465501.1| - 8.4e-19 68.3 1.3 9.2e-19 68.2 0.1 1.7 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219851069|ref|YP_002465501.1| - 2.9e-12 46.9 0.3 1.1e-11 44.9 0.2 2.0 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase EF-hand_6 PF13405.1 gi|219851069|ref|YP_002465501.1| - 0.00037 20.1 1.9 0.051 13.4 0.1 3.0 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.27 gi|219851069|ref|YP_002465501.1| - 0.019 14.2 0.3 0.019 14.2 0.2 3.0 4 0 0 4 4 4 0 EF hand EF-hand_8 PF13833.1 gi|219851069|ref|YP_002465501.1| - 0.1 12.2 7.6 0.11 12.1 0.3 2.8 3 0 0 3 3 3 0 EF-hand domain pair EF-hand_7 PF13499.1 gi|219851069|ref|YP_002465501.1| - 0.18 11.9 1.2 5 7.3 0.1 2.6 1 1 1 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219851069|ref|YP_002465501.1| - 0.38 10.1 4.9 0.78 9.2 0.2 2.6 2 0 0 2 2 2 0 EF hand NosD PF05048.8 gi|219851070|ref|YP_002465502.1| - 6.5e-31 107.2 7.1 6.5e-31 107.2 5.0 1.7 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) CBM_6 PF03422.10 gi|219851070|ref|YP_002465502.1| - 5.1e-21 75.1 4.4 4.5e-20 72.0 3.0 2.6 1 1 0 1 1 1 1 Carbohydrate binding module (family 6) Lipase_GDSL_2 PF13472.1 gi|219851070|ref|YP_002465502.1| - 1.9e-18 67.1 0.4 5.1e-18 65.8 0.3 1.8 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219851070|ref|YP_002465502.1| - 1.9e-18 67.1 0.2 3.5e-18 66.2 0.1 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Beta_helix PF13229.1 gi|219851070|ref|YP_002465502.1| - 3.4e-10 39.9 15.8 6.6e-10 38.9 11.0 1.4 1 0 0 1 1 1 1 Right handed beta helix region EF-hand_6 PF13405.1 gi|219851070|ref|YP_002465502.1| - 0.0053 16.5 0.7 1.5 8.8 0.0 3.0 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.27 gi|219851070|ref|YP_002465502.1| - 0.13 11.5 0.1 0.13 11.5 0.1 3.5 4 0 0 4 4 4 0 EF hand EF-hand_7 PF13499.1 gi|219851070|ref|YP_002465502.1| - 0.22 11.6 0.7 27 4.9 0.1 2.6 2 0 0 2 2 2 0 EF-hand domain pair ORC6 PF05460.8 gi|219851070|ref|YP_002465502.1| - 0.98 8.4 2.9 1.6 7.7 2.0 1.2 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) EF-hand_8 PF13833.1 gi|219851070|ref|YP_002465502.1| - 4.4 7.0 8.5 0.56 9.8 0.1 2.7 3 0 0 3 3 3 0 EF-hand domain pair Pyr_redox_2 PF07992.9 gi|219851071|ref|YP_002465503.1| - 4.6e-27 95.2 0.3 7.8e-27 94.4 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|219851071|ref|YP_002465503.1| - 3.3e-17 63.2 0.6 1.7e-14 54.3 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.19 gi|219851071|ref|YP_002465503.1| - 9.2e-16 57.5 0.4 1.7e-15 56.7 0.3 1.5 1 0 0 1 1 1 1 Glutaredoxin Lycopene_cycl PF05834.7 gi|219851071|ref|YP_002465503.1| - 2.5e-08 33.2 3.3 3.8e-05 22.7 0.0 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein GIDA PF01134.17 gi|219851071|ref|YP_002465503.1| - 6.6e-08 31.8 5.6 0.0017 17.2 0.1 4.0 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|219851071|ref|YP_002465503.1| - 1.2e-07 32.0 1.0 3.3e-06 27.4 0.0 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase GST_N_3 PF13417.1 gi|219851071|ref|YP_002465503.1| - 2.9e-06 27.4 0.0 5.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thi4 PF01946.12 gi|219851071|ref|YP_002465503.1| - 3.9e-05 22.8 0.8 0.00049 19.2 0.1 2.6 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|219851071|ref|YP_002465503.1| - 5.7e-05 22.1 7.4 0.12 11.2 0.7 3.3 2 1 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|219851071|ref|YP_002465503.1| - 7.2e-05 21.4 5.7 0.028 12.9 0.2 3.3 3 0 0 3 3 3 2 HI0933-like protein GST_N_2 PF13409.1 gi|219851071|ref|YP_002465503.1| - 0.00014 21.7 0.0 0.00025 20.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.2 gi|219851071|ref|YP_002465503.1| - 0.00015 20.9 0.3 0.00015 20.9 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|219851071|ref|YP_002465503.1| - 0.00021 20.3 11.8 0.00036 19.4 0.4 3.9 3 1 1 4 4 4 1 FAD binding domain Thioredoxin_3 PF13192.1 gi|219851071|ref|YP_002465503.1| - 0.00056 19.6 0.1 0.0017 18.1 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin domain ArsC PF03960.10 gi|219851071|ref|YP_002465503.1| - 0.00085 19.3 0.0 0.0065 16.5 0.0 2.2 1 1 1 2 2 2 1 ArsC family FAD_binding_3 PF01494.14 gi|219851071|ref|YP_002465503.1| - 0.0041 16.2 0.7 0.02 13.9 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|219851071|ref|YP_002465503.1| - 0.0047 17.1 1.4 0.39 10.9 0.1 3.3 3 1 0 3 3 3 1 Putative NAD(P)-binding FMO-like PF00743.14 gi|219851071|ref|YP_002465503.1| - 0.0048 15.1 0.2 0.0088 14.2 0.0 1.4 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.1 gi|219851071|ref|YP_002465503.1| - 0.0082 15.9 6.6 0.084 12.6 0.1 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding DUF836 PF05768.9 gi|219851071|ref|YP_002465503.1| - 0.018 15.2 0.0 0.041 14.1 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) NAD_binding_8 PF13450.1 gi|219851071|ref|YP_002465503.1| - 0.025 14.6 2.6 0.027 14.4 0.1 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thioredoxin_2 PF13098.1 gi|219851071|ref|YP_002465503.1| - 0.049 13.8 0.0 0.097 12.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain K_oxygenase PF13434.1 gi|219851071|ref|YP_002465503.1| - 0.071 12.0 0.8 0.81 8.5 0.0 2.4 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|219851071|ref|YP_002465503.1| - 0.12 11.0 2.8 4.9 5.6 0.2 2.2 2 0 0 2 2 2 0 Tryptophan halogenase DSBA PF01323.15 gi|219851071|ref|YP_002465503.1| - 0.15 11.5 2.9 4.9 6.6 0.2 2.7 2 1 1 3 3 3 0 DSBA-like thioredoxin domain KaiC PF06745.8 gi|219851072|ref|YP_002465504.1| - 0.015 14.3 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 KaiC DUF835 PF05763.7 gi|219851072|ref|YP_002465504.1| - 0.076 12.5 0.1 0.14 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF835) Glyco_transf_4 PF13439.1 gi|219851072|ref|YP_002465504.1| - 0.092 12.4 0.0 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase Family 4 PAS_9 PF13426.1 gi|219851073|ref|YP_002465505.1| - 1.7e-34 118.3 0.1 5.6e-18 65.2 0.0 2.3 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219851073|ref|YP_002465505.1| - 5.3e-28 97.0 0.3 2.5e-15 56.2 0.0 2.4 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219851073|ref|YP_002465505.1| - 5.4e-27 94.0 0.2 2.7e-13 49.9 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|219851073|ref|YP_002465505.1| - 1.4e-11 44.3 0.0 1e-08 35.1 0.0 3.1 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|219851073|ref|YP_002465505.1| - 3.6e-10 40.0 0.0 0.00047 20.3 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|219851073|ref|YP_002465505.1| - 1.4e-09 37.4 0.0 0.00024 20.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|219851073|ref|YP_002465505.1| - 0.00017 21.5 0.0 0.0094 15.9 0.0 2.6 2 1 0 2 2 2 1 PAS domain GatB_Yqey PF02637.13 gi|219851073|ref|YP_002465505.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 GatB domain DNA_pol_E_B PF04042.11 gi|219851074|ref|YP_002465506.1| - 1.8e-16 60.0 0.0 2.5e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|219851074|ref|YP_002465506.1| - 5.6e-12 45.7 0.0 1.4e-11 44.4 0.0 1.6 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|219851074|ref|YP_002465506.1| - 5.3e-08 32.4 0.0 8.8e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|219851074|ref|YP_002465506.1| - 3.7e-05 23.5 0.0 0.0001 22.0 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.18 gi|219851075|ref|YP_002465507.1| - 1.3e-05 24.7 0.0 2.5e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like Radical_SAM PF04055.16 gi|219851076|ref|YP_002465508.1| - 7.1e-10 39.3 0.1 1.3e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SinI PF08671.5 gi|219851076|ref|YP_002465508.1| - 0.0091 15.3 0.4 0.098 12.0 0.1 2.5 2 0 0 2 2 2 1 Anti-repressor SinI DUF1805 PF08827.6 gi|219851077|ref|YP_002465509.1| - 4.4e-21 74.4 0.0 7.4e-21 73.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.15 gi|219851077|ref|YP_002465509.1| - 0.13 11.9 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 impB/mucB/samB family HTH_13 PF11972.3 gi|219851077|ref|YP_002465509.1| - 0.14 12.0 0.0 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain FMN_red PF03358.10 gi|219851078|ref|YP_002465510.1| - 4.2e-22 78.3 0.0 5.3e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851078|ref|YP_002465510.1| - 2.4e-05 23.9 0.0 2.8e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Glyoxal_oxid_N PF07250.6 gi|219851078|ref|YP_002465510.1| - 0.09 11.8 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus DUF123 PF01986.11 gi|219851079|ref|YP_002465511.1| - 3.5e-24 84.8 0.0 4.2e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.22 gi|219851080|ref|YP_002465512.1| - 1.4e-21 77.0 1.2 1.7e-21 76.7 0.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219851080|ref|YP_002465512.1| - 2.2e-06 27.3 0.1 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.1 gi|219851080|ref|YP_002465512.1| - 0.064 12.6 0.0 0.15 11.4 0.0 1.7 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily ThiC PF01964.13 gi|219851081|ref|YP_002465513.1| - 1.3e-158 528.0 0.0 1.4e-158 527.8 0.0 1.0 1 0 0 1 1 1 1 ThiC family AIRC PF00731.15 gi|219851082|ref|YP_002465514.1| - 2.1e-45 153.6 1.3 2.5e-45 153.4 0.9 1.0 1 0 0 1 1 1 1 AIR carboxylase Dehydratase_MU PF02288.10 gi|219851082|ref|YP_002465514.1| - 0.13 11.9 0.1 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 Dehydratase medium subunit Aminotran_5 PF00266.14 gi|219851083|ref|YP_002465515.1| - 3.2e-31 108.4 0.0 4e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|219851083|ref|YP_002465515.1| - 0.0063 15.4 0.3 1 8.1 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-III DMRL_synthase PF00885.14 gi|219851084|ref|YP_002465516.1| - 3.5e-21 75.3 0.3 4e-21 75.2 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.14 gi|219851085|ref|YP_002465517.1| - 1.8e-37 128.2 1.1 2e-37 128.0 0.7 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|219851086|ref|YP_002465518.1| - 5.9e-69 232.7 0.0 6.7e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II NHL PF01436.16 gi|219851088|ref|YP_002465520.1| - 1.8e-137 440.8 34.3 8e-11 41.3 0.1 12.5 12 0 0 12 12 12 12 NHL repeat SGL PF08450.7 gi|219851088|ref|YP_002465520.1| - 2.5e-49 167.8 21.9 7.8e-05 22.1 0.1 12.1 2 2 9 12 12 12 12 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219851088|ref|YP_002465520.1| - 1.7e-46 155.7 60.9 0.0015 18.3 0.7 12.8 12 0 0 12 12 12 12 Beta-propeller repeat DUF839 PF05787.8 gi|219851088|ref|YP_002465520.1| - 1.3e-15 57.3 17.5 0.045 12.7 0.2 9.8 1 1 8 10 10 10 8 Bacterial protein of unknown function (DUF839) SdiA-regulated PF06977.6 gi|219851088|ref|YP_002465520.1| - 1.4e-12 47.0 3.1 1.1 8.1 0.0 9.7 8 2 1 9 9 9 2 SdiA-regulated Death_2 PF14786.1 gi|219851088|ref|YP_002465520.1| - 3.3e-11 43.0 0.0 2.7 7.7 0.0 8.1 4 2 4 8 8 8 1 Tube Death domain GCD14 PF08704.5 gi|219851088|ref|YP_002465520.1| - 8.7e-10 38.5 5.5 0.065 12.7 0.0 4.4 4 0 0 4 4 4 4 tRNA methyltransferase complex GCD14 subunit Reg_prop PF07494.6 gi|219851088|ref|YP_002465520.1| - 2.8e-09 35.8 4.4 1.3e+02 3.1 0.0 11.2 13 0 0 13 13 13 0 Two component regulator propeller Phytase-like PF13449.1 gi|219851088|ref|YP_002465520.1| - 1e-06 28.3 2.8 0.049 12.8 0.1 3.7 2 2 1 3 3 3 2 Esterase-like activity of phytase Ldl_recept_b PF00058.12 gi|219851088|ref|YP_002465520.1| - 2.7e-06 27.5 0.0 58 4.1 0.0 8.3 10 0 0 10 10 10 0 Low-density lipoprotein receptor repeat class B US22 PF02393.11 gi|219851088|ref|YP_002465520.1| - 5.3e-06 26.4 0.3 49 3.9 0.0 8.2 4 4 1 5 5 5 0 US22 like NSP2_assoc PF14758.1 gi|219851088|ref|YP_002465520.1| - 0.00016 21.8 0.1 52 3.8 0.0 5.0 4 0 0 4 4 4 0 Non-essential region of nsp2 of arterivirus polyprotein EF-hand_6 PF13405.1 gi|219851088|ref|YP_002465520.1| - 0.004 16.9 2.0 0.55 10.2 0.1 2.8 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.27 gi|219851088|ref|YP_002465520.1| - 0.0045 16.1 11.1 0.069 12.4 0.2 3.2 3 0 0 3 3 3 2 EF hand EF-hand_7 PF13499.1 gi|219851088|ref|YP_002465520.1| - 0.25 11.4 1.2 1.8 8.7 0.8 2.3 1 1 0 1 1 1 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219851088|ref|YP_002465520.1| - 0.46 10.1 4.1 1.6 8.4 0.2 2.5 2 0 0 2 2 2 0 EF-hand domain pair Lipocalin_3 PF12702.2 gi|219851088|ref|YP_002465520.1| - 1.4 8.9 4.2 68 3.5 0.0 4.1 4 1 0 4 4 4 0 Lipocalin-like DUF533 PF04391.7 gi|219851089|ref|YP_002465521.1| - 0.0047 16.3 3.3 0.0088 15.4 2.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF533) Gly-zipper_Omp PF13488.1 gi|219851089|ref|YP_002465521.1| - 0.025 14.2 17.6 0.025 14.2 12.2 2.0 2 0 0 2 2 2 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|219851089|ref|YP_002465521.1| - 0.057 12.9 19.4 0.038 13.4 11.7 2.0 2 0 0 2 2 2 0 YMGG-like Gly-zipper Tim17 PF02466.14 gi|219851089|ref|YP_002465521.1| - 0.068 13.2 4.8 0.18 11.8 3.4 1.6 1 1 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family FIST PF08495.5 gi|219851089|ref|YP_002465521.1| - 0.069 12.2 0.2 0.12 11.5 0.1 1.5 1 0 0 1 1 1 0 FIST N domain Gly-zipper_OmpA PF13436.1 gi|219851089|ref|YP_002465521.1| - 1.5 8.5 16.8 0.064 12.9 7.3 2.0 2 1 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Transgly_assoc PF04226.8 gi|219851089|ref|YP_002465521.1| - 2.5 8.2 12.2 3.6 7.7 3.9 2.3 2 0 0 2 2 2 0 Transglycosylase associated protein Bacteriocin_IIc PF10439.4 gi|219851089|ref|YP_002465521.1| - 6.7 6.9 15.7 0.42 10.7 0.4 2.7 2 1 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Rick_17kDa_Anti PF05433.10 gi|219851089|ref|YP_002465521.1| - 8.9 6.0 24.8 38 4.0 17.0 2.3 1 1 0 1 1 1 0 Glycine zipper 2TM domain FmdE PF02663.9 gi|219851090|ref|YP_002465522.1| - 5.8e-41 139.4 0.0 6.8e-41 139.2 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|219851090|ref|YP_002465522.1| - 6.2e-06 25.8 3.9 1.4e-05 24.6 2.7 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Cas_DxTHG PF09455.5 gi|219851091|ref|YP_002465523.1| - 2.6e-38 132.1 0.0 4e-37 128.2 0.0 1.9 2 0 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family ABC2_membrane PF01061.19 gi|219851092|ref|YP_002465524.1| - 1.5e-26 92.9 30.0 1.5e-26 92.9 20.8 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219851092|ref|YP_002465524.1| - 5.6e-13 48.6 39.8 5.6e-13 48.6 27.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219851092|ref|YP_002465524.1| - 2.6e-05 23.2 27.0 3.3e-05 22.8 18.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219851092|ref|YP_002465524.1| - 0.017 14.2 40.2 0.025 13.7 27.8 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|219851093|ref|YP_002465525.1| - 1.5e-34 119.2 0.0 4.1e-34 117.8 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|219851093|ref|YP_002465525.1| - 1.1e-15 58.3 0.0 3.5e-10 40.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|219851093|ref|YP_002465525.1| - 1.6e-07 31.7 0.0 4.2e-07 30.3 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|219851093|ref|YP_002465525.1| - 3.6e-05 23.2 0.1 8.3e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219851093|ref|YP_002465525.1| - 0.00011 21.4 0.0 0.00021 20.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|219851093|ref|YP_002465525.1| - 0.00012 22.4 0.2 0.00025 21.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|219851093|ref|YP_002465525.1| - 0.00018 20.8 0.0 0.0023 17.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219851093|ref|YP_002465525.1| - 0.00025 20.2 0.0 0.028 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|219851093|ref|YP_002465525.1| - 0.0031 17.5 0.1 0.0068 16.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|219851093|ref|YP_002465525.1| - 0.005 16.3 0.3 0.82 9.0 0.1 2.2 1 1 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|219851093|ref|YP_002465525.1| - 0.0077 16.1 0.0 0.027 14.3 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SRP54 PF00448.17 gi|219851093|ref|YP_002465525.1| - 0.01 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|219851093|ref|YP_002465525.1| - 0.025 14.1 0.0 0.077 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|219851093|ref|YP_002465525.1| - 0.035 14.2 0.4 0.4 10.8 0.2 2.6 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|219851093|ref|YP_002465525.1| - 0.071 13.0 1.1 0.16 11.9 0.5 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|219851093|ref|YP_002465525.1| - 0.086 12.7 0.1 0.21 11.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|219851093|ref|YP_002465525.1| - 0.17 10.5 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|219851093|ref|YP_002465525.1| - 0.18 12.6 0.9 1.5 9.6 0.3 2.4 1 1 1 2 2 2 0 AAA domain CofC PF01983.11 gi|219851094|ref|YP_002465526.1| - 1.2e-42 145.3 0.0 1.5e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|219851094|ref|YP_002465526.1| - 0.00012 22.1 0.2 0.00017 21.7 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DPPIV_N PF00930.16 gi|219851095|ref|YP_002465527.1| - 5.6e-06 25.1 5.1 0.38 9.2 0.0 3.3 2 1 1 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|219851095|ref|YP_002465527.1| - 1.2e-05 23.9 0.2 1.3 7.3 0.0 3.2 2 1 1 3 3 3 3 Oligogalacturonate lyase PD40 PF07676.7 gi|219851095|ref|YP_002465527.1| - 0.00019 20.9 9.1 0.16 11.6 0.2 5.2 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat PQQ_2 PF13360.1 gi|219851095|ref|YP_002465527.1| - 0.0083 15.6 4.6 0.012 15.0 0.7 2.6 1 1 2 3 3 3 1 PQQ-like domain EF-hand_6 PF13405.1 gi|219851095|ref|YP_002465527.1| - 0.012 15.3 1.9 0.84 9.6 0.2 2.6 2 0 0 2 2 2 0 EF-hand domain Kelch_3 PF13415.1 gi|219851095|ref|YP_002465527.1| - 0.022 14.9 0.2 0.2 11.8 0.1 2.7 2 0 0 2 2 2 0 Galactose oxidase, central domain EF-hand_1 PF00036.27 gi|219851095|ref|YP_002465527.1| - 0.077 12.3 7.8 0.11 11.9 0.1 2.8 3 0 0 3 3 3 0 EF hand EF-hand_8 PF13833.1 gi|219851095|ref|YP_002465527.1| - 0.19 11.3 3.5 0.94 9.1 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair Kelch_4 PF13418.1 gi|219851095|ref|YP_002465527.1| - 0.4 10.4 2.9 20 5.0 0.0 3.3 3 0 0 3 3 3 0 Galactose oxidase, central domain EF-hand_5 PF13202.1 gi|219851095|ref|YP_002465527.1| - 6.2 6.3 5.6 1.9 7.9 0.2 2.6 2 0 0 2 2 2 0 EF hand CBM_6 PF03422.10 gi|219851096|ref|YP_002465528.1| - 2.7e-30 105.1 6.1 1.1e-19 70.8 0.0 7.3 4 2 2 7 7 7 2 Carbohydrate binding module (family 6) PKD PF00801.15 gi|219851096|ref|YP_002465528.1| - 2.6e-07 30.2 2.3 2.6e-07 30.2 1.6 9.0 5 4 1 6 6 6 3 PKD domain Y_Y_Y PF07495.8 gi|219851096|ref|YP_002465528.1| - 0.024 14.3 3.6 0.65 9.7 0.1 3.9 4 0 0 4 4 4 0 Y_Y_Y domain CBS PF00571.23 gi|219851097|ref|YP_002465529.1| - 7.8e-21 73.6 0.3 3.8e-09 36.2 0.0 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|219851097|ref|YP_002465529.1| - 0.1 12.7 0.0 4.7 7.3 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain Na_H_Exchanger PF00999.16 gi|219851098|ref|YP_002465530.1| - 2e-61 207.6 53.0 2.4e-61 207.3 36.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2238 PF09997.4 gi|219851098|ref|YP_002465530.1| - 0.0011 18.4 0.2 0.003 16.9 0.1 1.8 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF3153 PF11353.3 gi|219851099|ref|YP_002465531.1| - 0.00068 19.1 0.2 0.0012 18.3 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3153) DUF4245 PF14030.1 gi|219851100|ref|YP_002465532.1| - 5.4e-06 26.2 0.1 1.8e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF4245) EGF_alliinase PF04863.8 gi|219851101|ref|YP_002465533.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Alliinase EGF-like domain KH_2 PF07650.12 gi|219851102|ref|YP_002465534.1| - 4.7e-19 67.7 2.5 2.5e-14 52.5 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|219851102|ref|YP_002465534.1| - 4e-09 36.1 0.3 1.8e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|219851102|ref|YP_002465534.1| - 3.2e-06 26.6 0.7 0.0055 16.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|219851102|ref|YP_002465534.1| - 1.6e-05 24.4 0.5 0.0011 18.5 0.0 2.3 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|219851102|ref|YP_002465534.1| - 0.0072 15.9 4.3 0.037 13.6 0.3 2.5 2 0 0 2 2 2 1 KH domain PRA-PH PF01503.12 gi|219851103|ref|YP_002465535.1| - 4.5e-11 42.8 0.2 5.1e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|219851103|ref|YP_002465535.1| - 1.1e-07 31.6 0.3 1.1e-07 31.6 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain 2-Hacid_dh_C PF02826.14 gi|219851104|ref|YP_002465536.1| - 3.3e-63 212.0 0.2 4.8e-63 211.5 0.2 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|219851104|ref|YP_002465536.1| - 5.3e-36 123.0 1.0 5.3e-36 123.0 0.7 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|219851104|ref|YP_002465536.1| - 2.3e-08 33.3 0.1 8.5e-08 31.5 0.0 2.0 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|219851104|ref|YP_002465536.1| - 0.00025 20.4 0.2 0.00059 19.2 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|219851104|ref|YP_002465536.1| - 0.0027 17.5 0.8 0.0077 16.0 0.5 1.7 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|219851104|ref|YP_002465536.1| - 0.0031 17.3 0.7 0.0089 15.8 0.5 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.19 gi|219851104|ref|YP_002465536.1| - 0.033 14.1 0.2 0.071 13.0 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|219851104|ref|YP_002465536.1| - 0.038 14.4 0.3 0.13 12.7 0.2 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF308 PF03729.8 gi|219851105|ref|YP_002465537.1| - 5.7e-16 58.2 47.7 4.4e-07 29.7 13.7 3.1 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) DUF2762 PF10960.3 gi|219851105|ref|YP_002465537.1| - 2 8.2 6.6 6.9 6.4 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2762) DUF2231 PF09990.4 gi|219851105|ref|YP_002465537.1| - 4.7 7.6 17.2 1.4 9.2 2.8 2.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) Nitroreductase PF00881.19 gi|219851106|ref|YP_002465538.1| - 1.3e-24 86.9 0.0 1.5e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Ribosomal_L3 PF00297.17 gi|219851107|ref|YP_002465539.1| - 3.2e-74 249.6 0.6 3.7e-74 249.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|219851108|ref|YP_002465540.1| - 8.7e-40 136.1 1.0 1e-39 135.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|219851109|ref|YP_002465541.1| - 1.8e-14 53.4 1.9 2.9e-14 52.7 1.3 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 RRM_6 PF14259.1 gi|219851109|ref|YP_002465541.1| - 0.011 15.6 0.1 0.031 14.2 0.0 1.7 1 1 1 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) TusA PF01206.12 gi|219851109|ref|YP_002465541.1| - 0.029 13.9 0.1 0.057 13.0 0.1 1.5 1 1 0 1 1 1 0 Sulfurtransferase TusA MatP PF06303.7 gi|219851109|ref|YP_002465541.1| - 0.057 13.3 0.1 0.065 13.1 0.0 1.0 1 0 0 1 1 1 0 Organiser of macrodomain of Terminus of chromosome Calcipressin PF04847.7 gi|219851109|ref|YP_002465541.1| - 0.064 12.8 0.1 0.13 11.8 0.1 1.4 1 1 1 2 2 2 0 Calcipressin RRM_3 PF08777.6 gi|219851109|ref|YP_002465541.1| - 0.07 12.9 0.1 0.088 12.6 0.1 1.2 1 0 0 1 1 1 0 RNA binding motif RRM_1 PF00076.17 gi|219851109|ref|YP_002465541.1| - 0.088 12.4 0.1 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Pox_polyA_pol_N PF12630.2 gi|219851109|ref|YP_002465541.1| - 0.14 12.2 0.5 0.22 11.6 0.3 1.4 1 1 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain Ribosomal_L2_C PF03947.13 gi|219851110|ref|YP_002465542.1| - 2.5e-44 150.2 3.1 6.1e-44 148.9 1.3 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|219851110|ref|YP_002465542.1| - 5.6e-13 48.6 0.0 1.5e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|219851111|ref|YP_002465543.1| - 2.5e-21 75.0 0.0 3.5e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|219851112|ref|YP_002465544.1| - 5.8e-31 106.5 0.2 7.4e-31 106.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|219851113|ref|YP_002465545.1| - 4e-16 59.0 0.7 7.7e-16 58.0 0.5 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|219851113|ref|YP_002465545.1| - 4.8e-13 48.4 0.1 1.3e-12 47.1 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|219851113|ref|YP_002465545.1| - 0.0012 18.4 0.6 0.0032 17.0 0.1 2.0 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|219851113|ref|YP_002465545.1| - 0.015 14.9 0.1 0.04 13.5 0.0 1.8 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|219851113|ref|YP_002465545.1| - 0.029 14.0 0.8 0.11 12.1 0.1 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|219851114|ref|YP_002465546.1| - 1.2e-13 50.5 0.6 1.3e-13 50.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein SAB PF04382.8 gi|219851114|ref|YP_002465546.1| - 0.079 12.6 0.3 6.8 6.4 0.0 2.1 2 0 0 2 2 2 0 SAB domain UPF0086 PF01868.11 gi|219851115|ref|YP_002465547.1| - 9.8e-26 89.2 0.2 1.1e-25 89.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 AHSA1 PF08327.6 gi|219851115|ref|YP_002465547.1| - 0.036 14.1 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Ribosomal_S17 PF00366.15 gi|219851116|ref|YP_002465548.1| - 2.6e-27 94.6 2.3 3.3e-27 94.3 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|219851117|ref|YP_002465549.1| - 4.5e-35 120.0 0.1 5e-35 119.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|219851118|ref|YP_002465550.1| - 0.00012 21.6 3.4 0.00012 21.6 2.4 1.8 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.15 gi|219851119|ref|YP_002465551.1| - 1e-23 82.8 0.2 7e-23 80.0 0.0 2.0 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|219851119|ref|YP_002465551.1| - 2.5e-12 46.4 0.9 5.2e-12 45.4 0.6 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|219851119|ref|YP_002465551.1| - 6.8e-06 25.4 0.0 1.3e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|219851119|ref|YP_002465551.1| - 7.1e-05 22.3 0.2 0.00021 20.8 0.1 2.0 2 0 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.16 gi|219851120|ref|YP_002465552.1| - 4.2e-27 93.7 0.0 5.6e-27 93.3 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|219851120|ref|YP_002465552.1| - 4.7e-15 55.1 0.1 9.6e-15 54.1 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|219851121|ref|YP_002465553.1| - 4.3e-19 67.6 4.3 4.8e-19 67.4 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF2318 PF10080.4 gi|219851121|ref|YP_002465553.1| - 0.0081 15.9 0.5 0.0091 15.7 0.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) DUF1451 PF07295.6 gi|219851121|ref|YP_002465553.1| - 0.029 14.1 0.4 0.03 14.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|219851121|ref|YP_002465553.1| - 0.046 13.6 1.7 0.054 13.3 1.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF1244 PF06844.6 gi|219851121|ref|YP_002465553.1| - 0.07 12.9 0.5 0.16 11.8 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1244) DUF4428 PF14471.1 gi|219851121|ref|YP_002465553.1| - 0.11 12.2 0.8 0.21 11.3 0.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) DZR PF12773.2 gi|219851121|ref|YP_002465553.1| - 0.14 11.9 1.2 0.2 11.4 0.8 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4 PF00097.20 gi|219851121|ref|YP_002465553.1| - 0.19 11.3 2.4 0.59 9.8 0.2 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.1 gi|219851121|ref|YP_002465553.1| - 0.42 10.4 3.9 1.5 8.7 2.7 1.7 1 1 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.1 gi|219851121|ref|YP_002465553.1| - 0.43 10.2 2.4 1.6 8.4 1.7 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 gi|219851121|ref|YP_002465553.1| - 0.46 10.5 2.9 1.5 8.9 2.2 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Ribosomal_S8 PF00410.14 gi|219851122|ref|YP_002465554.1| - 6.3e-25 87.4 0.0 8.6e-25 87.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|219851123|ref|YP_002465555.1| - 1.3e-30 105.7 1.5 9.6e-17 61.2 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.13 gi|219851124|ref|YP_002465556.1| - 1e-33 115.6 0.1 1.3e-33 115.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|219851125|ref|YP_002465557.1| - 3.1e-55 186.0 7.0 3.6e-55 185.8 4.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L18p PF00861.17 gi|219851126|ref|YP_002465558.1| - 1.7e-35 121.7 0.2 2.2e-35 121.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|219851127|ref|YP_002465559.1| - 6.7e-27 93.0 4.6 1.1e-26 92.3 3.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|219851127|ref|YP_002465559.1| - 7.9e-26 89.1 0.3 1.5e-25 88.2 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Como_LCP PF02247.11 gi|219851127|ref|YP_002465559.1| - 0.046 12.1 0.0 0.077 11.3 0.0 1.3 1 0 0 1 1 1 0 Large coat protein Ribosomal_L21p PF00829.16 gi|219851127|ref|YP_002465559.1| - 0.06 13.4 0.3 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Ribosomal prokaryotic L21 protein Ribosomal_L30 PF00327.15 gi|219851128|ref|YP_002465560.1| - 4.6e-23 80.5 0.4 4.6e-23 80.5 0.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|219851129|ref|YP_002465561.1| - 4.8e-24 85.1 0.3 5.7e-24 84.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 UL11 PF11094.3 gi|219851129|ref|YP_002465561.1| - 0.054 13.3 0.3 0.49 10.2 0.1 2.3 2 0 0 2 2 2 0 Membrane-associated tegument protein SecY PF00344.15 gi|219851130|ref|YP_002465562.1| - 1.1e-94 317.2 23.8 1.3e-94 316.9 16.5 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|219851130|ref|YP_002465562.1| - 3.3e-12 45.7 3.0 4.8e-12 45.1 0.4 2.6 2 0 0 2 2 2 1 Plug domain of Sec61p NSP10 PF09401.5 gi|219851130|ref|YP_002465562.1| - 0.066 12.9 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA synthesis protein NSP10 AAA_18 PF13238.1 gi|219851131|ref|YP_002465563.1| - 2.3e-14 53.7 0.1 3.3e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|219851131|ref|YP_002465563.1| - 1e-06 29.5 0.1 1.5e-06 28.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|219851131|ref|YP_002465563.1| - 1.4e-05 24.8 0.1 3.1e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 NTPase Arch_ATPase PF01637.13 gi|219851131|ref|YP_002465563.1| - 0.00013 21.7 0.0 0.00015 21.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|219851131|ref|YP_002465563.1| - 0.00096 19.0 0.0 0.0015 18.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|219851131|ref|YP_002465563.1| - 0.0011 17.7 0.0 0.0017 17.1 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|219851131|ref|YP_002465563.1| - 0.0023 17.6 0.0 0.005 16.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|219851131|ref|YP_002465563.1| - 0.0032 17.4 0.0 0.0042 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|219851131|ref|YP_002465563.1| - 0.0032 17.5 0.1 0.0077 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|219851131|ref|YP_002465563.1| - 0.0054 16.7 1.2 0.076 12.9 0.3 2.2 1 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|219851131|ref|YP_002465563.1| - 0.0064 15.5 0.0 0.0064 15.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|219851131|ref|YP_002465563.1| - 0.0087 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase KTI12 PF08433.5 gi|219851131|ref|YP_002465563.1| - 0.0097 15.1 0.2 0.017 14.3 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 NACHT PF05729.7 gi|219851131|ref|YP_002465563.1| - 0.01 15.4 0.0 0.023 14.3 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|219851131|ref|YP_002465563.1| - 0.011 15.6 0.1 0.018 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|219851131|ref|YP_002465563.1| - 0.015 15.0 0.4 0.046 13.4 0.0 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|219851131|ref|YP_002465563.1| - 0.017 14.2 0.1 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|219851131|ref|YP_002465563.1| - 0.018 14.5 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|219851131|ref|YP_002465563.1| - 0.03 14.5 0.1 0.045 13.9 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|219851131|ref|YP_002465563.1| - 0.035 14.6 0.2 0.078 13.4 0.1 1.6 2 0 0 2 2 2 0 Miro-like protein MMR_HSR1 PF01926.18 gi|219851131|ref|YP_002465563.1| - 0.04 13.8 0.4 0.06 13.3 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase UvrD-helicase PF00580.16 gi|219851131|ref|YP_002465563.1| - 0.049 12.9 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_11 PF13086.1 gi|219851131|ref|YP_002465563.1| - 0.054 13.0 0.0 0.065 12.7 0.0 1.3 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|219851131|ref|YP_002465563.1| - 0.1 11.9 0.0 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase DAP3 PF10236.4 gi|219851131|ref|YP_002465563.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF106 PF01956.11 gi|219851132|ref|YP_002465564.1| - 2.9e-45 153.8 2.9 3.6e-45 153.5 2.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|219851132|ref|YP_002465564.1| - 0.0012 18.4 5.3 0.0012 18.4 3.7 1.5 2 0 0 2 2 2 1 60Kd inner membrane protein COX16 PF14138.1 gi|219851132|ref|YP_002465564.1| - 0.024 14.7 0.7 0.042 14.0 0.5 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 DUF3987 PF13148.1 gi|219851132|ref|YP_002465564.1| - 0.16 10.5 1.4 0.21 10.1 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) DUF2207 PF09972.4 gi|219851132|ref|YP_002465564.1| - 0.34 9.4 5.8 0.064 11.8 0.4 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Mto2_bdg PF12808.2 gi|219851132|ref|YP_002465564.1| - 0.69 10.0 3.9 1.1 9.4 2.7 1.2 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DUF2208 PF09973.4 gi|219851132|ref|YP_002465564.1| - 0.8 8.8 6.2 0.46 9.6 3.0 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) Cytidylate_kin2 PF13189.1 gi|219851133|ref|YP_002465565.1| - 7.7e-21 74.7 0.1 2.8e-19 69.6 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|219851133|ref|YP_002465565.1| - 8.8e-13 49.1 0.0 1.3e-12 48.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219851133|ref|YP_002465565.1| - 1.2e-10 41.8 0.0 1.5e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|219851133|ref|YP_002465565.1| - 9.4e-07 28.9 0.1 1.9e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|219851133|ref|YP_002465565.1| - 0.00022 20.7 0.1 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase ADK PF00406.17 gi|219851133|ref|YP_002465565.1| - 0.0017 18.2 0.1 0.0023 17.8 0.0 1.5 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.24 gi|219851133|ref|YP_002465565.1| - 0.0034 17.5 0.0 0.005 17.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|219851133|ref|YP_002465565.1| - 0.0052 16.6 0.0 0.0079 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|219851133|ref|YP_002465565.1| - 0.0092 15.7 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|219851133|ref|YP_002465565.1| - 0.048 13.5 0.3 0.32 10.8 0.2 1.9 1 1 0 1 1 1 0 Shikimate kinase DUF525 PF04379.9 gi|219851133|ref|YP_002465565.1| - 0.1 12.5 0.1 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF525) E3_binding PF02817.12 gi|219851133|ref|YP_002465565.1| - 0.13 11.9 0.0 3.9 7.2 0.0 2.7 3 0 0 3 3 3 0 e3 binding domain PadR PF03551.9 gi|219851134|ref|YP_002465566.1| - 0.002 17.8 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Nitroreductase PF00881.19 gi|219851135|ref|YP_002465567.1| - 4.9e-30 104.5 0.0 6e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|219851135|ref|YP_002465567.1| - 4.7e-05 22.6 0.7 0.076 12.1 0.1 3.0 1 1 0 2 2 2 2 Putative TM nitroreductase DUF3821 PF12863.2 gi|219851136|ref|YP_002465568.1| - 8.1e-61 205.3 1.9 8.1e-61 205.3 1.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3821) Fer4 PF00037.22 gi|219851137|ref|YP_002465569.1| - 2.4e-18 64.9 17.6 5.3e-10 38.4 3.3 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851137|ref|YP_002465569.1| - 7.6e-18 64.0 24.0 9.2e-13 47.7 9.0 1.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851137|ref|YP_002465569.1| - 3.5e-15 55.1 17.7 3.1e-08 33.1 3.7 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219851137|ref|YP_002465569.1| - 2.1e-12 46.1 17.1 8.3e-07 28.5 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219851137|ref|YP_002465569.1| - 5.2e-11 42.6 12.5 6.3e-11 42.3 8.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851137|ref|YP_002465569.1| - 1.1e-10 41.6 14.3 1.8e-10 40.9 10.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219851137|ref|YP_002465569.1| - 4.1e-10 39.3 15.5 5.8e-05 22.8 2.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851137|ref|YP_002465569.1| - 2.2e-09 36.8 14.0 6.8e-05 22.8 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851137|ref|YP_002465569.1| - 7.5e-09 36.2 11.9 0.0001 22.9 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|219851137|ref|YP_002465569.1| - 1.5e-06 28.0 14.2 3.1e-05 23.9 9.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219851137|ref|YP_002465569.1| - 2.3e-06 28.0 16.9 0.0022 18.5 3.6 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219851137|ref|YP_002465569.1| - 6.1e-06 26.5 17.6 0.0023 18.2 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851137|ref|YP_002465569.1| - 2.2e-05 24.7 13.3 0.0041 17.4 1.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219851137|ref|YP_002465569.1| - 2.4e-05 24.6 17.0 0.0013 19.1 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|219851137|ref|YP_002465569.1| - 4.5e-05 23.2 7.3 4.7e-05 23.2 5.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851137|ref|YP_002465569.1| - 9.5e-05 22.6 20.4 0.0016 18.8 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.6 gi|219851137|ref|YP_002465569.1| - 0.6 9.9 9.4 1.1 9.1 6.5 1.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster stn_TNFRSF12A PF12191.3 gi|219851137|ref|YP_002465569.1| - 8.1 6.5 8.5 13 5.8 3.4 2.0 1 1 1 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain DapB_C PF05173.9 gi|219851138|ref|YP_002465570.1| - 1.3e-40 138.2 0.0 1.9e-40 137.7 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|219851138|ref|YP_002465570.1| - 4e-26 91.3 2.7 6.4e-26 90.7 1.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.12 gi|219851138|ref|YP_002465570.1| - 0.018 13.9 0.1 0.027 13.3 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain DapB_C PF05173.9 gi|219851140|ref|YP_002465572.1| - 5.9e-42 142.5 0.0 8.5e-42 142.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|219851140|ref|YP_002465572.1| - 4.1e-27 94.5 2.9 6.2e-27 93.9 2.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.12 gi|219851140|ref|YP_002465572.1| - 0.011 14.6 0.1 0.016 14.0 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|219851140|ref|YP_002465572.1| - 0.042 13.2 0.2 0.065 12.6 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF2277 PF10041.4 gi|219851140|ref|YP_002465572.1| - 0.071 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) Peptidase_S41 PF03572.13 gi|219851140|ref|YP_002465572.1| - 0.12 11.7 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Peptidase family S41 3Beta_HSD PF01073.14 gi|219851140|ref|YP_002465572.1| - 0.23 10.1 1.2 0.32 9.6 0.8 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DHDPS PF00701.17 gi|219851141|ref|YP_002465573.1| - 7.8e-97 323.3 0.0 9.1e-97 323.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.17 gi|219851141|ref|YP_002465573.1| - 0.012 15.2 0.0 0.028 14.1 0.0 1.7 1 0 0 1 1 1 0 PA domain PEP_mutase PF13714.1 gi|219851141|ref|YP_002465573.1| - 0.03 13.5 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Ribosomal_S17e PF00833.13 gi|219851142|ref|YP_002465574.1| - 1.7e-12 47.1 0.0 1.8e-12 47.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 Aldolase_2 PF10120.4 gi|219851143|ref|YP_002465575.1| - 1.5e-13 50.5 0.0 3.7e-13 49.2 0.0 1.6 1 1 0 1 1 1 1 Putative aldolase PhoU PF01895.14 gi|219851144|ref|YP_002465576.1| - 6.2e-24 84.2 8.8 1.1e-18 67.4 1.6 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|219851144|ref|YP_002465576.1| - 9e-07 28.4 0.0 3.4e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE APH_6_hur PF04655.9 gi|219851144|ref|YP_002465576.1| - 0.058 12.5 0.5 2.2 7.3 0.0 2.2 2 0 0 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase PBP_like_2 PF12849.2 gi|219851145|ref|YP_002465577.1| - 8.3e-47 159.9 10.4 8.3e-47 159.9 7.2 2.0 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.2 gi|219851145|ref|YP_002465577.1| - 4.4e-18 64.9 1.3 7.4e-18 64.1 0.9 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|219851145|ref|YP_002465577.1| - 4.1e-14 52.7 0.8 4.1e-14 52.7 0.5 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|219851145|ref|YP_002465577.1| - 0.00045 20.0 3.1 0.0048 16.6 2.2 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|219851146|ref|YP_002465578.1| - 1.7e-46 158.0 33.2 1.2e-25 90.1 8.3 4.6 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ACT_6 PF13740.1 gi|219851146|ref|YP_002465578.1| - 0.0035 17.0 0.3 3.6 7.3 0.0 2.6 2 0 0 2 2 2 2 ACT domain EVC2_like PF12297.3 gi|219851146|ref|YP_002465578.1| - 5.6 5.4 4.7 0.76 8.3 0.1 1.7 2 0 0 2 2 2 0 Ellis van Creveld protein 2 like protein ABC_tran PF00005.22 gi|219851147|ref|YP_002465579.1| - 2.6e-29 102.2 0.0 3.7e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851147|ref|YP_002465579.1| - 5e-15 56.2 0.0 3e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219851147|ref|YP_002465579.1| - 1.1e-08 34.6 0.0 5.1e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219851147|ref|YP_002465579.1| - 1.1e-05 24.7 0.0 0.0097 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|219851147|ref|YP_002465579.1| - 8.6e-05 22.6 0.0 0.00023 21.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219851147|ref|YP_002465579.1| - 0.00013 21.3 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|219851147|ref|YP_002465579.1| - 0.00016 21.7 0.1 0.0016 18.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|219851147|ref|YP_002465579.1| - 0.00053 19.2 0.0 0.0015 17.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|219851147|ref|YP_002465579.1| - 0.002 18.5 0.1 0.0056 17.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|219851147|ref|YP_002465579.1| - 0.013 15.2 0.0 0.077 12.6 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_10 PF12846.2 gi|219851147|ref|YP_002465579.1| - 0.014 14.8 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ABC_ATPase PF09818.4 gi|219851147|ref|YP_002465579.1| - 0.021 13.4 0.0 1.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|219851147|ref|YP_002465579.1| - 0.023 14.4 0.0 0.33 10.7 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|219851147|ref|YP_002465579.1| - 0.036 13.9 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|219851147|ref|YP_002465579.1| - 0.039 12.6 0.1 0.058 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|219851147|ref|YP_002465579.1| - 0.041 14.0 0.0 0.81 9.8 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|219851147|ref|YP_002465579.1| - 0.053 13.1 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|219851147|ref|YP_002465579.1| - 0.057 13.3 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|219851147|ref|YP_002465579.1| - 0.057 12.8 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|219851147|ref|YP_002465579.1| - 0.06 12.4 0.0 0.18 10.9 0.0 1.8 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_PrkA PF08298.6 gi|219851147|ref|YP_002465579.1| - 0.11 11.1 0.0 0.23 10.0 0.0 1.4 2 0 0 2 2 2 0 PrkA AAA domain AAA_30 PF13604.1 gi|219851147|ref|YP_002465579.1| - 0.11 12.0 0.0 0.8 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|219851147|ref|YP_002465579.1| - 0.12 13.2 0.3 0.21 12.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|219851147|ref|YP_002465579.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|219851147|ref|YP_002465579.1| - 0.14 10.5 0.0 7.4 4.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoU PF01895.14 gi|219851148|ref|YP_002465580.1| - 9.3e-36 122.1 6.1 2e-17 63.3 1.6 2.1 2 0 0 2 2 2 2 PhoU domain DHBP_synthase PF00926.14 gi|219851148|ref|YP_002465580.1| - 0.028 13.6 0.2 0.084 12.0 0.0 1.8 2 0 0 2 2 2 0 3,4-dihydroxy-2-butanone 4-phosphate synthase Mod_r PF07200.8 gi|219851148|ref|YP_002465580.1| - 0.063 13.1 1.3 0.085 12.7 0.9 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein CorA PF01544.13 gi|219851149|ref|YP_002465581.1| - 8.9e-62 208.7 7.9 1.1e-61 208.4 5.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Methyltransf_31 PF13847.1 gi|219851150|ref|YP_002465582.1| - 1.5e-25 89.5 0.0 2e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851150|ref|YP_002465582.1| - 7.9e-22 77.5 0.0 1.9e-21 76.3 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851150|ref|YP_002465582.1| - 5.3e-18 65.6 0.0 1.5e-17 64.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851150|ref|YP_002465582.1| - 2.4e-16 60.0 0.0 5.1e-16 58.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851150|ref|YP_002465582.1| - 1.1e-14 54.1 0.0 2.7e-14 52.8 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|219851150|ref|YP_002465582.1| - 3.9e-14 52.8 0.0 9.9e-14 51.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851150|ref|YP_002465582.1| - 6.2e-12 45.5 0.0 5.3e-11 42.5 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|219851150|ref|YP_002465582.1| - 1.4e-11 44.1 0.0 2.5e-11 43.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|219851150|ref|YP_002465582.1| - 4.9e-11 42.6 0.0 8.4e-11 41.8 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|219851150|ref|YP_002465582.1| - 1.5e-08 33.9 0.0 2.5e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|219851150|ref|YP_002465582.1| - 3.3e-08 33.3 0.0 4.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|219851150|ref|YP_002465582.1| - 1.9e-05 24.1 0.0 3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|219851150|ref|YP_002465582.1| - 3.2e-05 23.1 0.0 5.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|219851150|ref|YP_002465582.1| - 0.00039 19.9 0.0 0.00066 19.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.6 gi|219851150|ref|YP_002465582.1| - 0.0004 19.2 0.0 0.00064 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.13 gi|219851150|ref|YP_002465582.1| - 0.00076 18.8 0.0 0.51 9.5 0.0 2.2 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain RrnaAD PF00398.15 gi|219851150|ref|YP_002465582.1| - 0.0022 17.0 0.0 0.0031 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|219851150|ref|YP_002465582.1| - 0.0023 17.4 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit TehB PF03848.9 gi|219851150|ref|YP_002465582.1| - 0.0029 16.7 0.0 0.0043 16.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.6 gi|219851150|ref|YP_002465582.1| - 0.0035 16.0 0.0 0.0051 15.5 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_3 PF01596.12 gi|219851150|ref|YP_002465582.1| - 0.0036 16.3 0.0 0.0055 15.7 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|219851150|ref|YP_002465582.1| - 0.0082 16.9 0.0 0.024 15.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|219851150|ref|YP_002465582.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein FmrO PF07091.6 gi|219851150|ref|YP_002465582.1| - 0.024 13.6 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF938 PF06080.7 gi|219851150|ref|YP_002465582.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) FtsJ PF01728.14 gi|219851150|ref|YP_002465582.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Rsm22 PF09243.5 gi|219851150|ref|YP_002465582.1| - 0.16 10.9 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 PGM_PMM_I PF02878.11 gi|219851151|ref|YP_002465583.1| - 5.7e-41 139.2 0.0 1.3e-39 134.8 0.0 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|219851151|ref|YP_002465583.1| - 1.9e-23 82.7 0.0 4.2e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|219851151|ref|YP_002465583.1| - 1.6e-19 69.9 0.0 3.2e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|219851151|ref|YP_002465583.1| - 6.2e-10 38.9 0.1 1.5e-09 37.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CBM_6 PF03422.10 gi|219851153|ref|YP_002465585.1| - 1.2e-135 445.4 43.6 2.5e-22 79.3 0.2 8.2 7 0 0 7 7 7 7 Carbohydrate binding module (family 6) DUF4399 PF14347.1 gi|219851153|ref|YP_002465585.1| - 1.1e-08 34.9 5.0 11 6.1 0.0 7.8 8 0 0 8 8 8 4 Domain of unknown function (DUF4399) GAF_2 PF13185.1 gi|219851154|ref|YP_002465586.1| - 5.7e-10 39.8 0.0 6.4e-10 39.6 0.0 1.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219851154|ref|YP_002465586.1| - 3e-05 24.1 0.0 4.1e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|219851154|ref|YP_002465586.1| - 0.00029 21.0 0.0 0.0004 20.5 0.0 1.2 1 0 0 1 1 1 1 GAF domain AMP-binding PF00501.23 gi|219851155|ref|YP_002465587.1| - 2.9e-91 305.9 0.0 3.5e-91 305.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219851155|ref|YP_002465587.1| - 2.5e-22 79.5 0.2 5.7e-22 78.4 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Grp1_Fun34_YaaH PF01184.14 gi|219851156|ref|YP_002465588.1| - 1.5e-61 207.3 19.1 1.9e-61 207.0 13.2 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family TspO_MBR PF03073.10 gi|219851156|ref|YP_002465588.1| - 0.019 14.4 1.7 0.019 14.4 1.2 2.1 1 1 1 2 2 2 0 TspO/MBR family DUF2626 PF11117.3 gi|219851156|ref|YP_002465588.1| - 0.71 10.3 8.1 0.18 12.2 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2626) CBM_6 PF03422.10 gi|219851157|ref|YP_002465589.1| - 2.4e-21 76.1 2.5 4.4e-21 75.3 0.1 2.8 3 1 0 3 3 3 1 Carbohydrate binding module (family 6) EF-hand_6 PF13405.1 gi|219851157|ref|YP_002465589.1| - 0.0014 18.3 0.4 1 9.4 0.0 3.2 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.27 gi|219851157|ref|YP_002465589.1| - 0.0088 15.2 9.7 0.095 12.0 0.1 3.3 4 0 0 4 4 4 2 EF hand EF-hand_8 PF13833.1 gi|219851157|ref|YP_002465589.1| - 1.6 8.4 5.2 1.4 8.5 0.2 2.8 3 0 0 3 3 3 0 EF-hand domain pair PD40 PF07676.7 gi|219851158|ref|YP_002465590.1| - 0.0003 20.3 2.3 0.31 10.7 0.1 2.9 3 1 0 3 3 3 2 WD40-like Beta Propeller Repeat APS-reductase_C PF12139.3 gi|219851158|ref|YP_002465590.1| - 0.0071 16.4 0.1 2.5 8.3 0.0 2.2 1 1 1 2 2 2 2 Adenosine-5'-phosphosulfate reductase beta subunit DUF3688 PF12461.3 gi|219851158|ref|YP_002465590.1| - 0.011 16.1 0.5 0.073 13.4 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3688) Kelch_4 PF13418.1 gi|219851158|ref|YP_002465590.1| - 0.012 15.3 0.0 5.2 6.9 0.0 3.1 3 0 0 3 3 3 0 Galactose oxidase, central domain DUF3317 PF11779.3 gi|219851158|ref|YP_002465590.1| - 0.072 12.5 1.5 3.4 7.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3317) ODV-E18 PF10717.4 gi|219851160|ref|YP_002465592.1| - 0.097 12.1 0.3 0.097 12.1 0.2 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Baculo_11_kDa PF06143.6 gi|219851160|ref|YP_002465592.1| - 5.7 6.3 6.6 6.8 6.1 4.6 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family SecD-TM1 PF13721.1 gi|219851162|ref|YP_002465594.1| - 0.1 12.8 2.0 0.23 11.7 0.1 2.3 2 1 0 2 2 2 0 SecD export protein N-terminal TM region DUF1358 PF07096.6 gi|219851162|ref|YP_002465594.1| - 1.4 8.6 4.1 23 4.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1358) PrsW-protease PF13367.1 gi|219851164|ref|YP_002465596.1| - 9.6e-34 116.2 13.8 1.3e-33 115.8 9.6 1.2 1 0 0 1 1 1 1 Protease prsW family Glutaredoxin PF00462.19 gi|219851165|ref|YP_002465597.1| - 3.3e-13 49.3 0.0 5.6e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|219851165|ref|YP_002465597.1| - 0.00039 20.5 0.0 0.00051 20.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|219851165|ref|YP_002465597.1| - 0.0094 16.0 0.1 0.5 10.4 0.0 2.1 1 1 1 2 2 2 1 ArsC family GST_N_2 PF13409.1 gi|219851165|ref|YP_002465597.1| - 0.01 15.8 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.1 gi|219851165|ref|YP_002465597.1| - 0.073 12.8 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain DUF836 PF05768.9 gi|219851165|ref|YP_002465597.1| - 0.073 13.3 0.1 0.077 13.2 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FeThRed_B PF02943.10 gi|219851166|ref|YP_002465598.1| - 4.3e-22 77.8 0.1 6.6e-22 77.2 0.0 1.3 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Cys_rich_CPCC PF14206.1 gi|219851166|ref|YP_002465598.1| - 0.024 14.1 2.8 0.024 14.1 1.9 2.2 2 1 0 2 2 2 0 Cysteine-rich CPCC RecR PF02132.10 gi|219851166|ref|YP_002465598.1| - 0.043 13.2 1.8 0.09 12.2 1.3 1.5 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.15 gi|219851166|ref|YP_002465598.1| - 0.096 12.5 7.7 0.9 9.4 0.2 2.7 1 1 1 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|219851166|ref|YP_002465598.1| - 0.62 10.4 5.0 5.5 7.4 1.0 2.7 2 0 0 2 2 2 0 Zinc-finger double domain Pro_CA PF00484.14 gi|219851168|ref|YP_002465600.1| - 3.1e-46 157.1 0.0 3.5e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Carbonic anhydrase ILVD_EDD PF00920.16 gi|219851169|ref|YP_002465601.1| - 1.9e-211 703.0 6.3 2.1e-211 702.8 4.4 1.0 1 0 0 1 1 1 1 Dehydratase family DUF126 PF01989.11 gi|219851170|ref|YP_002465602.1| - 3.8e-36 122.6 0.3 6.2e-36 121.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 AAA PF00004.24 gi|219851171|ref|YP_002465603.1| - 9.2e-45 152.0 0.3 1.8e-44 151.1 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|219851171|ref|YP_002465603.1| - 6e-06 26.2 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|219851171|ref|YP_002465603.1| - 2.2e-05 24.5 0.1 0.0012 18.9 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|219851171|ref|YP_002465603.1| - 3.5e-05 22.9 0.0 9.5e-05 21.5 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|219851171|ref|YP_002465603.1| - 0.00015 21.9 0.3 0.0052 16.9 0.2 2.6 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|219851171|ref|YP_002465603.1| - 0.00017 21.3 0.5 0.002 17.8 0.3 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|219851171|ref|YP_002465603.1| - 0.00034 20.3 0.1 0.00084 19.0 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|219851171|ref|YP_002465603.1| - 0.00057 18.7 0.0 0.001 17.8 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|219851171|ref|YP_002465603.1| - 0.00067 18.7 0.1 0.0051 15.9 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|219851171|ref|YP_002465603.1| - 0.0016 19.2 0.0 0.0056 17.4 0.0 1.9 2 0 0 2 2 1 1 AAA domain HALZ PF02183.13 gi|219851171|ref|YP_002465603.1| - 0.0016 18.0 2.3 0.0035 17.0 1.6 1.5 1 0 0 1 1 1 1 Homeobox associated leucine zipper IstB_IS21 PF01695.12 gi|219851171|ref|YP_002465603.1| - 0.0036 16.7 1.7 0.0066 15.8 0.1 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein bZIP_1 PF00170.16 gi|219851171|ref|YP_002465603.1| - 0.0037 17.1 1.5 0.01 15.7 1.1 1.8 1 0 0 1 1 1 1 bZIP transcription factor AAA_14 PF13173.1 gi|219851171|ref|YP_002465603.1| - 0.0048 16.7 0.0 0.0099 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219851171|ref|YP_002465603.1| - 0.0061 16.8 0.1 0.021 15.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|219851171|ref|YP_002465603.1| - 0.007 16.2 0.1 0.021 14.7 0.1 2.0 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|219851171|ref|YP_002465603.1| - 0.01 14.7 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|219851171|ref|YP_002465603.1| - 0.011 14.7 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Torsin PF06309.6 gi|219851171|ref|YP_002465603.1| - 0.011 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_3 PF07726.6 gi|219851171|ref|YP_002465603.1| - 0.015 14.9 0.1 0.048 13.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|219851171|ref|YP_002465603.1| - 0.018 14.5 0.5 0.11 11.9 0.3 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|219851171|ref|YP_002465603.1| - 0.018 14.4 0.6 0.48 9.7 0.0 2.7 2 1 1 3 3 3 0 AAA domain DUF972 PF06156.8 gi|219851171|ref|YP_002465603.1| - 0.019 15.3 1.1 0.054 13.8 0.5 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF972) Mg_chelatase PF01078.16 gi|219851171|ref|YP_002465603.1| - 0.031 13.4 0.0 0.066 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|219851171|ref|YP_002465603.1| - 0.032 13.8 0.1 0.97 9.0 0.1 2.3 1 1 1 2 2 2 0 NACHT domain KaiC PF06745.8 gi|219851171|ref|YP_002465603.1| - 0.038 13.1 0.6 0.36 9.8 0.1 2.5 2 1 1 3 3 3 0 KaiC DivIC PF04977.10 gi|219851171|ref|YP_002465603.1| - 0.053 13.0 1.4 0.13 11.7 1.0 1.6 1 0 0 1 1 1 0 Septum formation initiator CPT PF07931.7 gi|219851171|ref|YP_002465603.1| - 0.057 13.0 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.1 gi|219851171|ref|YP_002465603.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.6 gi|219851171|ref|YP_002465603.1| - 0.12 12.2 2.0 0.72 9.7 0.6 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Allexi_40kDa PF05549.6 gi|219851171|ref|YP_002465603.1| - 0.12 11.6 0.3 5.2 6.2 0.2 2.2 2 0 0 2 2 2 0 Allexivirus 40kDa protein Parvo_NS1 PF01057.12 gi|219851171|ref|YP_002465603.1| - 0.15 10.9 0.1 0.93 8.3 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 RNA_helicase PF00910.17 gi|219851171|ref|YP_002465603.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|219851171|ref|YP_002465603.1| - 0.17 11.5 1.2 1.4 8.5 0.0 2.7 2 1 1 3 3 3 0 NTPase bZIP_2 PF07716.10 gi|219851171|ref|YP_002465603.1| - 0.43 10.4 3.8 1.2 9.0 2.6 1.9 1 0 0 1 1 1 0 Basic region leucine zipper Flavoprotein PF02441.14 gi|219851173|ref|YP_002465605.1| - 1.3e-22 79.8 0.0 1.8e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein UbiD PF01977.11 gi|219851174|ref|YP_002465606.1| - 3.7e-109 364.9 0.4 4.9e-109 364.4 0.3 1.2 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.8 gi|219851175|ref|YP_002465607.1| - 5.5e-141 469.7 0.0 6.2e-141 469.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HEAT_2 PF13646.1 gi|219851176|ref|YP_002465608.1| - 1.5e-46 156.5 4.2 6.3e-15 55.2 0.1 3.3 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.17 gi|219851176|ref|YP_002465608.1| - 1.4e-18 65.2 1.6 0.098 12.7 0.0 6.4 6 1 1 7 7 7 5 HEAT repeat HEAT_PBS PF03130.11 gi|219851176|ref|YP_002465608.1| - 2.4e-18 64.6 14.5 0.0021 18.3 0.2 6.2 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219851176|ref|YP_002465608.1| - 1.8e-13 50.4 11.9 0.00042 20.7 0.0 6.2 5 2 2 7 7 7 4 HEAT-like repeat Arm PF00514.18 gi|219851176|ref|YP_002465608.1| - 9.5e-08 31.5 0.9 1.9 8.4 0.1 6.1 5 1 1 6 6 6 2 Armadillo/beta-catenin-like repeat HHH_5 PF14520.1 gi|219851176|ref|YP_002465608.1| - 0.086 13.0 0.4 0.96 9.6 0.0 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF432 PF04254.8 gi|219851177|ref|YP_002465609.1| - 1.9e-35 121.4 0.0 2.6e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|219851178|ref|YP_002465610.1| - 1.7e-53 180.9 2.5 1.7e-53 180.9 1.7 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsX PF02687.16 gi|219851178|ref|YP_002465610.1| - 0.43 10.3 9.6 0.88 9.3 2.0 2.3 2 0 0 2 2 2 0 FtsX-like permease family HEAT_2 PF13646.1 gi|219851179|ref|YP_002465611.1| - 1.7e-19 69.8 5.5 1.2e-11 44.6 0.5 2.5 1 1 2 3 3 3 2 HEAT repeats HEAT_PBS PF03130.11 gi|219851179|ref|YP_002465611.1| - 5.4e-10 38.7 18.2 0.00012 22.1 0.4 5.1 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219851179|ref|YP_002465611.1| - 6.7e-09 35.9 4.9 0.0028 18.0 0.5 3.6 2 1 1 3 3 3 3 HEAT-like repeat HEAT PF02985.17 gi|219851179|ref|YP_002465611.1| - 6.6e-06 25.7 2.0 0.00058 19.7 0.0 3.6 4 0 0 4 4 4 1 HEAT repeat Arm PF00514.18 gi|219851179|ref|YP_002465611.1| - 0.0022 17.7 0.1 1.4 8.9 0.0 3.4 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF2516 PF10724.4 gi|219851180|ref|YP_002465612.1| - 0.0043 17.0 2.8 0.014 15.3 1.9 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2516) DUF792 PF05632.6 gi|219851180|ref|YP_002465612.1| - 0.021 14.1 0.1 0.1 11.9 0.0 1.9 2 0 0 2 2 2 0 Borrelia burgdorferi protein of unknown function (DUF792) SPARC_Ca_bdg PF10591.4 gi|219851181|ref|YP_002465613.1| - 0.084 12.9 0.1 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Secreted protein acidic and rich in cysteine Ca binding region YlbD_coat PF14071.1 gi|219851181|ref|YP_002465613.1| - 0.89 9.6 3.3 2.2 8.3 2.2 1.7 1 1 1 2 2 2 0 Putative coat protein DUF4398 PF14346.1 gi|219851181|ref|YP_002465613.1| - 3.1 7.9 23.7 8.4 6.5 5.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) TarH PF02203.10 gi|219851181|ref|YP_002465613.1| - 3.7 7.3 18.2 0.91 9.3 8.3 2.4 1 1 1 2 2 2 0 Tar ligand binding domain homologue Tubulin PF00091.20 gi|219851182|ref|YP_002465614.1| - 7e-26 91.3 0.2 1.6e-25 90.2 0.1 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Amino_oxidase PF01593.19 gi|219851183|ref|YP_002465615.1| - 2.3e-20 73.1 0.0 1.1e-19 70.9 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|219851183|ref|YP_002465615.1| - 4.8e-11 42.5 0.1 1.1e-10 41.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|219851183|ref|YP_002465615.1| - 1.7e-08 33.7 0.0 0.00086 18.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|219851183|ref|YP_002465615.1| - 0.00016 20.8 0.0 0.00039 19.6 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|219851183|ref|YP_002465615.1| - 0.00055 19.8 0.0 0.00083 19.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|219851183|ref|YP_002465615.1| - 0.0058 15.5 0.1 0.014 14.2 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|219851183|ref|YP_002465615.1| - 0.006 16.9 0.0 0.46 10.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|219851183|ref|YP_002465615.1| - 0.013 13.9 0.0 0.1 11.0 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|219851183|ref|YP_002465615.1| - 0.027 14.5 0.0 3.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_2 PF00535.21 gi|219851184|ref|YP_002465616.1| - 8.4e-21 74.3 0.0 1.1e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|219851184|ref|YP_002465616.1| - 3.3e-08 32.9 0.0 3.9e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|219851184|ref|YP_002465616.1| - 6.2e-08 32.7 0.7 1.2e-07 31.7 0.5 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219851184|ref|YP_002465616.1| - 0.0066 16.7 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0104 PF03706.8 gi|219851185|ref|YP_002465617.1| - 9.2e-38 130.1 32.8 1.2e-37 129.7 22.8 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF788 PF05620.6 gi|219851185|ref|YP_002465617.1| - 10 5.9 10.9 2.8 7.7 5.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF788) DUF2298 PF10060.4 gi|219851186|ref|YP_002465618.1| - 6.9e-97 325.2 37.8 7e-97 325.2 24.7 1.8 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Ribosomal_L7Ae PF01248.21 gi|219851187|ref|YP_002465619.1| - 5e-23 80.4 0.3 5.9e-23 80.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|219851187|ref|YP_002465619.1| - 0.0039 16.9 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain Ribosomal_S28e PF01200.13 gi|219851188|ref|YP_002465620.1| - 2.1e-31 107.4 0.3 2.2e-31 107.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|219851189|ref|YP_002465621.1| - 8.6e-26 89.5 0.5 9.3e-26 89.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|219851189|ref|YP_002465621.1| - 6e-08 32.1 2.6 7.8e-08 31.8 1.8 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|219851189|ref|YP_002465621.1| - 6.8e-06 25.8 0.8 8.5e-06 25.5 0.5 1.2 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|219851189|ref|YP_002465621.1| - 0.025 14.7 2.2 0.061 13.4 1.5 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain ICAM_N PF03921.9 gi|219851189|ref|YP_002465621.1| - 0.049 13.1 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain DUF2116 PF09889.4 gi|219851189|ref|YP_002465621.1| - 0.069 12.9 0.8 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn_ribbon_recom PF13408.1 gi|219851189|ref|YP_002465621.1| - 0.11 12.7 1.2 0.15 12.3 0.8 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain NDK PF00334.14 gi|219851190|ref|YP_002465622.1| - 1.6e-52 176.8 0.0 1.9e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF371 PF04027.8 gi|219851191|ref|YP_002465623.1| - 1.4e-42 144.4 0.0 1.6e-42 144.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Acyl-CoA_dh_2 PF08028.6 gi|219851191|ref|YP_002465623.1| - 0.061 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Exonuc_VII_S PF02609.11 gi|219851192|ref|YP_002465624.1| - 4.6e-20 71.1 6.0 5.1e-20 71.0 4.2 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit Cyc-maltodext_C PF10438.4 gi|219851192|ref|YP_002465624.1| - 0.01 15.9 0.1 0.012 15.6 0.1 1.1 1 0 0 1 1 1 1 Cyclo-malto-dextrinase C-terminal domain HR1 PF02185.11 gi|219851192|ref|YP_002465624.1| - 0.067 12.9 0.9 0.39 10.4 0.6 1.9 1 1 1 2 2 2 0 Hr1 repeat Exonuc_VII_L PF02601.10 gi|219851193|ref|YP_002465625.1| - 6.5e-72 242.4 0.0 3.2e-63 213.8 0.0 2.0 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|219851193|ref|YP_002465625.1| - 2.7e-25 88.0 0.0 8.7e-25 86.4 0.0 1.9 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|219851193|ref|YP_002465625.1| - 7.6e-06 25.7 0.0 2e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AP_endonuc_2 PF01261.19 gi|219851194|ref|YP_002465626.1| - 3.2e-17 62.5 0.0 4.7e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF21 PF01595.15 gi|219851195|ref|YP_002465627.1| - 4.7e-49 166.1 1.0 6.1e-49 165.8 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|219851195|ref|YP_002465627.1| - 7.8e-23 80.0 0.1 2e-22 78.7 0.1 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|219851195|ref|YP_002465627.1| - 3.9e-17 61.7 2.8 8.9e-09 35.0 0.1 2.4 2 0 0 2 2 2 2 CBS domain Formyl_trans_N PF00551.14 gi|219851196|ref|YP_002465628.1| - 2e-53 180.6 0.0 2.3e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peripla_BP_4 PF13407.1 gi|219851196|ref|YP_002465628.1| - 0.0096 15.2 0.7 0.023 14.0 0.4 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain Rpr2 PF04032.11 gi|219851197|ref|YP_002465629.1| - 4.2e-16 58.5 0.9 5.4e-16 58.2 0.6 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Sgf11 PF08209.6 gi|219851197|ref|YP_002465629.1| - 0.025 13.8 0.7 0.062 12.6 0.1 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|219851197|ref|YP_002465629.1| - 0.048 13.3 3.8 0.36 10.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Elf1 PF05129.8 gi|219851197|ref|YP_002465629.1| - 0.057 13.1 1.2 0.083 12.6 0.4 1.7 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|219851197|ref|YP_002465629.1| - 0.12 12.2 0.7 0.25 11.1 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219851197|ref|YP_002465629.1| - 0.16 11.2 2.6 0.81 8.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|219851197|ref|YP_002465629.1| - 1.5 8.6 4.9 3.2 7.6 1.7 2.1 1 1 1 2 2 2 0 RNHCP domain CRS1_YhbY PF01985.16 gi|219851198|ref|YP_002465630.1| - 1.2e-16 60.4 0.1 1.6e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF2917 PF11142.3 gi|219851198|ref|YP_002465630.1| - 0.08 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) Ribosomal_S19e PF01090.14 gi|219851199|ref|YP_002465631.1| - 7e-58 194.0 0.0 8e-58 193.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e PaaX PF07848.7 gi|219851199|ref|YP_002465631.1| - 0.098 12.6 0.1 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 PaaX-like protein dsDNA_bind PF01984.15 gi|219851200|ref|YP_002465632.1| - 2e-30 104.9 15.0 2.3e-30 104.7 10.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DLD PF14878.1 gi|219851200|ref|YP_002465632.1| - 0.021 14.8 0.2 0.025 14.6 0.2 1.2 1 0 0 1 1 1 0 Death-like domain of SPT6 Alkyl_sulf_C PF14864.1 gi|219851200|ref|YP_002465632.1| - 0.025 14.5 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Alkyl sulfatase C-terminal GIDA_assoc_3 PF13932.1 gi|219851200|ref|YP_002465632.1| - 0.85 9.7 4.6 0.47 10.5 1.3 1.9 2 0 0 2 2 2 0 GidA associated domain 3 DUF3069 PF11269.3 gi|219851200|ref|YP_002465632.1| - 2.6 8.1 5.8 1.9 8.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3069) ATP_bind_4 PF01902.12 gi|219851201|ref|YP_002465633.1| - 0.00033 20.1 0.0 0.00053 19.4 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|219851201|ref|YP_002465633.1| - 0.00037 20.0 0.0 0.00046 19.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|219851201|ref|YP_002465633.1| - 0.00057 19.2 0.0 0.00098 18.4 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|219851201|ref|YP_002465633.1| - 0.0016 17.9 0.0 0.96 8.9 0.0 2.1 2 0 0 2 2 2 2 PP-loop family ThiI PF02568.9 gi|219851201|ref|YP_002465633.1| - 0.011 15.1 0.0 0.026 13.9 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|219851201|ref|YP_002465633.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|219851201|ref|YP_002465633.1| - 0.15 10.6 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase Ribosomal_L39 PF00832.15 gi|219851202|ref|YP_002465634.1| - 3.8e-20 71.0 8.9 4.4e-20 70.8 6.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|219851203|ref|YP_002465635.1| - 1.8e-29 101.1 1.5 2.1e-29 101.0 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|219851204|ref|YP_002465636.1| - 2.8e-64 215.8 0.4 3.2e-64 215.6 0.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|219851205|ref|YP_002465637.1| - 9.5e-07 28.7 0.0 1.1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|219851206|ref|YP_002465638.1| - 2.5e-20 72.3 0.1 3.1e-20 71.9 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|219851206|ref|YP_002465638.1| - 0.0037 17.0 0.8 0.072 12.8 0.1 2.1 2 0 0 2 2 2 1 Prefoldin subunit GlgS PF08971.6 gi|219851206|ref|YP_002465638.1| - 0.0038 17.1 0.0 0.0088 15.9 0.0 1.6 1 0 0 1 1 1 1 Glycogen synthesis protein DUF1383 PF07134.6 gi|219851206|ref|YP_002465638.1| - 0.0073 15.2 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1383) Prefoldin_3 PF13758.1 gi|219851206|ref|YP_002465638.1| - 0.0079 15.9 1.7 0.047 13.4 0.2 2.3 1 1 1 2 2 2 1 Prefoldin subunit BMFP PF04380.8 gi|219851206|ref|YP_002465638.1| - 0.018 15.1 0.3 0.054 13.6 0.2 1.8 1 1 0 1 1 1 0 Membrane fusogenic activity Nsp1_C PF05064.8 gi|219851206|ref|YP_002465638.1| - 0.02 14.5 0.8 0.2 11.3 0.1 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region FlaC_arch PF05377.6 gi|219851206|ref|YP_002465638.1| - 0.038 13.8 1.5 0.076 12.9 0.1 2.0 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4286 PF14114.1 gi|219851206|ref|YP_002465638.1| - 0.043 14.0 0.2 0.74 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4286) Reo_sigmaC PF04582.7 gi|219851206|ref|YP_002465638.1| - 0.095 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein phiKZ_IP PF12699.2 gi|219851206|ref|YP_002465638.1| - 0.12 11.3 1.6 0.17 10.7 0.9 1.3 1 1 0 1 1 1 0 phiKZ-like phage internal head proteins DUF1664 PF07889.7 gi|219851206|ref|YP_002465638.1| - 0.17 11.6 1.9 0.7 9.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF16 PF01519.11 gi|219851206|ref|YP_002465638.1| - 0.21 11.8 1.2 1 9.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 SRP54 PF00448.17 gi|219851207|ref|YP_002465639.1| - 1.9e-64 216.7 1.0 2.6e-64 216.3 0.7 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|219851207|ref|YP_002465639.1| - 2.1e-11 43.7 2.5 1.3e-10 41.1 0.8 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_19 PF13245.1 gi|219851207|ref|YP_002465639.1| - 0.00049 19.8 0.3 0.0012 18.5 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain APS_kinase PF01583.15 gi|219851207|ref|YP_002465639.1| - 0.0012 18.4 0.1 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.14 gi|219851207|ref|YP_002465639.1| - 0.0015 17.9 0.5 0.0033 16.8 0.4 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|219851207|ref|YP_002465639.1| - 0.0019 18.0 0.1 0.0042 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|219851207|ref|YP_002465639.1| - 0.0039 16.2 0.0 0.0076 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|219851207|ref|YP_002465639.1| - 0.0066 16.0 0.3 0.013 15.1 0.2 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|219851207|ref|YP_002465639.1| - 0.016 14.0 0.2 0.039 12.7 0.1 1.6 1 0 0 1 1 1 0 ArgK protein AAA PF00004.24 gi|219851207|ref|YP_002465639.1| - 0.02 15.1 0.4 0.059 13.5 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219851207|ref|YP_002465639.1| - 0.025 14.5 0.1 0.062 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|219851207|ref|YP_002465639.1| - 0.042 13.5 2.7 0.057 13.1 0.7 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF348 PF03990.9 gi|219851207|ref|YP_002465639.1| - 0.045 13.3 0.3 0.045 13.3 0.2 2.2 2 0 0 2 2 1 0 Domain of unknown function (DUF348) AAA_17 PF13207.1 gi|219851207|ref|YP_002465639.1| - 0.064 14.0 0.4 0.16 12.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|219851207|ref|YP_002465639.1| - 0.094 12.4 1.2 0.17 11.5 0.1 2.1 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|219851207|ref|YP_002465639.1| - 0.11 12.5 0.8 0.23 11.4 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|219851207|ref|YP_002465639.1| - 0.13 11.7 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|219851207|ref|YP_002465639.1| - 0.17 12.0 0.5 0.77 9.9 0.3 2.1 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|219851207|ref|YP_002465639.1| - 0.17 11.3 3.3 1.2 8.5 2.3 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|219851208|ref|YP_002465640.1| - 2.7e-66 222.7 0.6 4.4e-66 222.0 0.4 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|219851208|ref|YP_002465640.1| - 2e-30 105.1 0.2 7.7e-30 103.2 0.1 2.1 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|219851208|ref|YP_002465640.1| - 2.6e-14 53.0 1.7 2.6e-14 53.0 1.2 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|219851208|ref|YP_002465640.1| - 2.4e-07 30.3 2.4 2e-05 24.0 0.2 3.1 3 0 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|219851208|ref|YP_002465640.1| - 8.8e-07 28.5 1.1 1.3e-06 27.9 0.2 1.8 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|219851208|ref|YP_002465640.1| - 1.8e-05 24.4 0.2 5.2e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|219851208|ref|YP_002465640.1| - 4.8e-05 22.5 0.1 0.00041 19.5 0.0 2.3 1 1 0 2 2 2 1 Zeta toxin MobB PF03205.9 gi|219851208|ref|YP_002465640.1| - 5.6e-05 22.8 1.6 0.00016 21.4 0.1 2.5 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|219851208|ref|YP_002465640.1| - 8.8e-05 22.5 0.9 0.00084 19.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|219851208|ref|YP_002465640.1| - 0.00078 20.2 0.0 0.0024 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|219851208|ref|YP_002465640.1| - 0.00089 18.1 0.4 0.0022 16.8 0.0 1.8 2 0 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|219851208|ref|YP_002465640.1| - 0.0016 18.5 0.8 0.0094 16.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|219851208|ref|YP_002465640.1| - 0.0017 17.4 0.0 0.0034 16.4 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase KTI12 PF08433.5 gi|219851208|ref|YP_002465640.1| - 0.0024 17.1 0.0 0.0046 16.1 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|219851208|ref|YP_002465640.1| - 0.0037 17.5 0.1 0.015 15.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|219851208|ref|YP_002465640.1| - 0.0054 16.6 0.1 0.012 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|219851208|ref|YP_002465640.1| - 0.0058 16.0 0.1 0.016 14.5 0.1 1.8 1 0 0 1 1 1 1 Thymidylate kinase TrwB_AAD_bind PF10412.4 gi|219851208|ref|YP_002465640.1| - 0.015 13.9 0.2 0.032 12.8 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|219851208|ref|YP_002465640.1| - 0.017 14.8 0.2 0.088 12.5 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_26 PF13500.1 gi|219851208|ref|YP_002465640.1| - 0.023 14.3 0.1 0.064 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|219851208|ref|YP_002465640.1| - 0.03 13.2 0.1 0.056 12.3 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_10 PF12846.2 gi|219851208|ref|YP_002465640.1| - 0.043 13.2 0.1 0.055 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain Glyco_transf_4 PF13439.1 gi|219851208|ref|YP_002465640.1| - 0.052 13.2 0.0 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 Glycosyltransferase Family 4 ATP_bind_1 PF03029.12 gi|219851208|ref|YP_002465640.1| - 0.054 13.0 0.1 0.14 11.6 0.1 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|219851208|ref|YP_002465640.1| - 0.069 12.3 1.3 1.6 7.8 0.1 2.6 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit ArsA_ATPase PF02374.10 gi|219851208|ref|YP_002465640.1| - 0.073 12.1 0.7 1.7 7.5 0.1 2.4 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_30 PF13604.1 gi|219851208|ref|YP_002465640.1| - 0.084 12.4 2.4 0.16 11.5 0.2 2.5 3 0 0 3 3 3 0 AAA domain Strumpellin PF10266.4 gi|219851208|ref|YP_002465640.1| - 0.34 8.2 0.9 0.45 7.8 0.1 1.5 2 0 0 2 2 2 0 Hereditary spastic paraplegia protein strumpellin Methyltrn_RNA_2 PF04013.7 gi|219851209|ref|YP_002465641.1| - 2.6e-53 180.5 0.0 2.9e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.12 gi|219851210|ref|YP_002465642.1| - 2.3e-10 40.4 0.1 5.7e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.13 gi|219851211|ref|YP_002465643.1| - 3e-29 100.7 2.3 3.3e-29 100.5 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|219851212|ref|YP_002465644.1| - 3.5e-13 49.5 0.2 4.2e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 VIT1 PF01988.14 gi|219851212|ref|YP_002465644.1| - 0.014 14.9 0.5 0.016 14.7 0.3 1.1 1 0 0 1 1 1 0 VIT family Orbi_VP5 PF00901.12 gi|219851212|ref|YP_002465644.1| - 0.059 11.5 1.1 0.072 11.2 0.8 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 FumaraseC_C PF10415.4 gi|219851212|ref|YP_002465644.1| - 0.061 13.3 0.3 1.8 8.6 0.0 2.4 1 1 1 2 2 2 0 Fumarase C C-terminus DUF655 PF04919.7 gi|219851213|ref|YP_002465645.1| - 4.7e-65 218.6 1.4 5.3e-65 218.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|219851213|ref|YP_002465645.1| - 0.00069 19.6 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|219851213|ref|YP_002465645.1| - 0.047 13.6 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|219851214|ref|YP_002465646.1| - 2e-43 148.3 0.0 2.6e-43 147.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|219851214|ref|YP_002465646.1| - 1.3e-07 31.6 0.1 2e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851214|ref|YP_002465646.1| - 0.00027 21.4 0.0 0.00039 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851214|ref|YP_002465646.1| - 0.0026 17.5 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851214|ref|YP_002465646.1| - 0.013 15.9 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851214|ref|YP_002465646.1| - 0.044 13.3 0.0 0.061 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851215|ref|YP_002465647.1| - 2.1e-13 50.2 0.2 3.9e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219851215|ref|YP_002465647.1| - 3.4e-11 42.7 0.0 4.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|219851215|ref|YP_002465647.1| - 6.3e-08 33.1 0.1 1.3e-07 32.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851215|ref|YP_002465647.1| - 6.9e-08 32.2 0.0 9.8e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851215|ref|YP_002465647.1| - 1.3e-06 28.2 0.0 3.4e-06 26.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851215|ref|YP_002465647.1| - 1.4e-06 28.6 0.1 0.00041 20.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|219851215|ref|YP_002465647.1| - 7.3e-05 22.2 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|219851215|ref|YP_002465647.1| - 0.00024 20.7 0.0 0.00034 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|219851215|ref|YP_002465647.1| - 0.0003 20.0 0.3 0.00072 18.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|219851215|ref|YP_002465647.1| - 0.00041 20.6 0.0 0.0009 19.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851215|ref|YP_002465647.1| - 0.00044 20.6 0.0 0.0035 17.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|219851215|ref|YP_002465647.1| - 0.0087 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF1269 PF06897.7 gi|219851215|ref|YP_002465647.1| - 0.098 12.6 0.1 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) OGG_N PF07934.7 gi|219851216|ref|YP_002465648.1| - 4e-24 84.8 0.0 6.5e-24 84.1 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|219851216|ref|YP_002465648.1| - 0.0003 21.0 0.0 0.00045 20.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|219851216|ref|YP_002465648.1| - 0.0048 16.5 0.0 0.0094 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif AnfO_nitrog PF09582.5 gi|219851217|ref|YP_002465649.1| - 1.9e-58 196.9 0.0 2.2e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) Suc_Fer-like PF06999.7 gi|219851218|ref|YP_002465650.1| - 1.8e-06 28.1 0.0 4.4e-06 26.8 0.0 1.5 2 0 0 2 2 2 1 Sucrase/ferredoxin-like 2Fe-2S_thioredx PF01257.14 gi|219851218|ref|YP_002465650.1| - 2.1e-05 24.1 0.0 2.9e-05 23.6 0.0 1.2 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.6 gi|219851218|ref|YP_002465650.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Oxidored_nitro PF00148.14 gi|219851219|ref|YP_002465651.1| - 3.6e-113 378.2 0.0 4.1e-113 378.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|219851220|ref|YP_002465652.1| - 3e-119 398.2 2.0 3.4e-119 398.0 1.4 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF619 PF04768.8 gi|219851220|ref|YP_002465652.1| - 0.0051 16.2 0.1 0.0098 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF619) Oxidored_nitro PF00148.14 gi|219851221|ref|YP_002465653.1| - 2.4e-128 428.2 0.0 2.7e-128 428.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|219851222|ref|YP_002465654.1| - 8.5e-144 479.0 0.3 1e-143 478.8 0.2 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase P-II PF00543.17 gi|219851223|ref|YP_002465655.1| - 3.6e-21 75.5 0.9 6.7e-21 74.6 0.6 1.4 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II 2-Hacid_dh_C PF02826.14 gi|219851223|ref|YP_002465655.1| - 0.067 12.3 0.0 0.091 11.9 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain P-II PF00543.17 gi|219851224|ref|YP_002465656.1| - 3.5e-28 98.0 1.5 3.9e-28 97.8 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Fer4_NifH PF00142.13 gi|219851225|ref|YP_002465657.1| - 2.5e-132 440.1 0.3 2.8e-132 439.9 0.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|219851225|ref|YP_002465657.1| - 2.2e-08 33.7 0.2 5.5e-08 32.4 0.2 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|219851225|ref|YP_002465657.1| - 2.3e-06 26.8 1.5 2.5e-06 26.7 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|219851225|ref|YP_002465657.1| - 7.6e-05 22.2 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_31 PF13614.1 gi|219851225|ref|YP_002465657.1| - 0.00011 22.2 0.0 0.00099 19.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|219851225|ref|YP_002465657.1| - 0.00015 21.8 0.1 0.00049 20.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|219851225|ref|YP_002465657.1| - 0.00025 19.9 0.1 0.00039 19.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|219851225|ref|YP_002465657.1| - 0.0019 17.6 0.1 0.0058 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|219851225|ref|YP_002465657.1| - 0.004 16.2 0.9 0.0059 15.7 0.1 1.6 2 0 0 2 2 2 1 ATPase MipZ AAA_22 PF13401.1 gi|219851225|ref|YP_002465657.1| - 0.005 16.9 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|219851225|ref|YP_002465657.1| - 0.015 15.0 0.2 0.034 13.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|219851225|ref|YP_002465657.1| - 0.022 14.1 0.3 0.045 13.1 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|219851225|ref|YP_002465657.1| - 0.024 14.3 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|219851225|ref|YP_002465657.1| - 0.03 13.1 0.1 0.079 11.8 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|219851225|ref|YP_002465657.1| - 0.057 12.9 0.4 0.1 12.1 0.2 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|219851225|ref|YP_002465657.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|219851225|ref|YP_002465657.1| - 0.11 12.1 0.2 0.22 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|219851225|ref|YP_002465657.1| - 0.11 11.9 0.3 0.24 10.8 0.1 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|219851225|ref|YP_002465657.1| - 0.12 12.5 0.1 0.32 11.1 0.0 1.7 2 0 0 2 2 2 0 RNA helicase NTPase_1 PF03266.10 gi|219851225|ref|YP_002465657.1| - 0.23 11.1 0.9 0.41 10.3 0.2 1.7 2 0 0 2 2 2 0 NTPase DUF2100 PF09873.4 gi|219851226|ref|YP_002465658.1| - 0.079 12.4 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) LAGLIDADG_3 PF14528.1 gi|219851226|ref|YP_002465658.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 LAGLIDADG-like domain DUF457 PF04307.9 gi|219851228|ref|YP_002465660.1| - 1e-19 70.4 11.0 1.2e-19 70.1 7.6 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Sugar_tr PF00083.19 gi|219851228|ref|YP_002465660.1| - 0.86 8.1 7.1 0.18 10.3 0.6 2.1 2 0 0 2 2 2 0 Sugar (and other) transporter Aldedh PF00171.17 gi|219851229|ref|YP_002465661.1| - 2.1e-163 543.9 0.2 2.3e-163 543.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|219851229|ref|YP_002465661.1| - 0.0043 15.8 0.0 0.0065 15.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) AdoHcyase PF05221.12 gi|219851230|ref|YP_002465662.1| - 1.1e-51 175.4 0.1 1.2e-51 175.2 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|219851230|ref|YP_002465662.1| - 2.8e-47 160.5 1.0 8.1e-47 159.0 0.3 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|219851230|ref|YP_002465662.1| - 2.5e-10 39.7 0.2 4.4e-10 38.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|219851230|ref|YP_002465662.1| - 1.6e-06 27.5 0.1 4.5e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|219851230|ref|YP_002465662.1| - 0.056 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|219851230|ref|YP_002465662.1| - 0.068 12.7 0.3 0.14 11.6 0.2 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain His_biosynth PF00977.16 gi|219851231|ref|YP_002465663.1| - 7.8e-87 290.3 0.6 8.9e-87 290.1 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|219851231|ref|YP_002465663.1| - 3.2e-05 22.9 0.0 0.017 13.9 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|219851231|ref|YP_002465663.1| - 3.3e-05 23.0 0.3 0.034 13.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|219851231|ref|YP_002465663.1| - 5.2e-05 22.3 1.3 0.057 12.3 0.2 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.10 gi|219851231|ref|YP_002465663.1| - 0.00036 19.8 3.4 0.037 13.1 0.4 2.3 2 1 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|219851231|ref|YP_002465663.1| - 0.0021 17.1 0.7 0.25 10.3 0.0 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Fucokinase PF07959.7 gi|219851231|ref|YP_002465663.1| - 0.0052 15.4 0.0 0.0074 14.9 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase IMPDH PF00478.20 gi|219851231|ref|YP_002465663.1| - 0.0094 14.8 2.2 0.065 12.1 0.0 2.2 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|219851231|ref|YP_002465663.1| - 0.019 14.1 0.1 0.077 12.2 0.0 2.0 1 1 1 2 2 2 0 PcrB family G3P_antiterm PF04309.7 gi|219851231|ref|YP_002465663.1| - 0.088 11.8 0.1 0.26 10.2 0.0 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|219851231|ref|YP_002465663.1| - 0.15 10.8 3.2 2.1 7.0 0.1 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase B5 PF03484.10 gi|219851232|ref|YP_002465664.1| - 1e-19 70.0 0.0 1.7e-18 66.1 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|219851232|ref|YP_002465664.1| - 6.2e-15 55.0 0.0 1.2e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|219851233|ref|YP_002465665.1| - 3.3e-90 301.6 0.0 4.3e-90 301.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|219851233|ref|YP_002465665.1| - 0.00047 19.0 1.2 0.018 13.8 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|219851233|ref|YP_002465665.1| - 0.0022 17.5 0.1 0.0067 16.0 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_1b PF00579.20 gi|219851234|ref|YP_002465666.1| - 3.5e-28 98.5 0.0 3.4e-16 59.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.12 gi|219851235|ref|YP_002465667.1| - 1.3e-40 137.0 0.7 2.5e-19 68.8 0.1 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|219851235|ref|YP_002465667.1| - 6.2e-24 83.3 0.4 1.1e-10 40.9 0.1 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|219851235|ref|YP_002465667.1| - 0.00025 20.4 0.0 0.5 9.8 0.0 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term HTH_IclR PF09339.5 gi|219851235|ref|YP_002465667.1| - 1.2 8.7 4.5 12 5.5 0.1 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain Response_reg PF00072.19 gi|219851236|ref|YP_002465668.1| - 4.7e-24 84.5 0.2 7.4e-24 83.9 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219851236|ref|YP_002465668.1| - 9.8e-10 38.7 0.2 2.3e-09 37.5 0.1 1.7 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|219851236|ref|YP_002465668.1| - 1.2e-05 25.3 0.0 2.7e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|219851236|ref|YP_002465668.1| - 0.00067 19.4 0.1 0.0021 17.8 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219851236|ref|YP_002465668.1| - 0.017 14.9 0.0 0.039 13.8 0.0 1.6 1 0 0 1 1 1 0 PAS domain PAS_9 PF13426.1 gi|219851237|ref|YP_002465669.1| - 2.8e-08 34.0 0.0 6.5e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219851237|ref|YP_002465669.1| - 2.7e-06 27.1 0.0 7.2e-06 25.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|219851237|ref|YP_002465669.1| - 7.6e-06 25.9 0.0 0.029 14.3 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|219851237|ref|YP_002465669.1| - 5e-05 22.9 0.0 8.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219851237|ref|YP_002465669.1| - 0.00055 19.8 0.3 0.0012 18.8 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|219851237|ref|YP_002465669.1| - 0.0019 17.9 0.0 0.0053 16.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|219851237|ref|YP_002465669.1| - 0.0023 17.4 0.1 0.0049 16.4 0.1 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain FrhB_FdhB_C PF04432.8 gi|219851239|ref|YP_002465671.1| - 2.7e-38 130.9 0.4 5.6e-38 129.8 0.2 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|219851239|ref|YP_002465671.1| - 1.5e-25 88.8 0.1 3.7e-25 87.6 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|219851239|ref|YP_002465671.1| - 1.7e-07 31.1 16.7 4.5e-07 29.7 10.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851239|ref|YP_002465671.1| - 3.5e-07 29.9 11.9 0.00057 19.6 0.0 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851239|ref|YP_002465671.1| - 2.7e-06 26.7 19.7 0.00026 20.4 1.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219851239|ref|YP_002465671.1| - 4.7e-05 23.6 16.6 9.4e-05 22.6 10.2 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851239|ref|YP_002465671.1| - 6.5e-05 22.6 19.2 0.0045 16.8 2.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851239|ref|YP_002465671.1| - 9.3e-05 22.7 17.7 0.00011 22.4 10.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851239|ref|YP_002465671.1| - 0.0022 18.3 20.1 0.0043 17.4 9.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851239|ref|YP_002465671.1| - 0.017 15.3 1.3 0.017 15.3 0.9 4.1 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219851239|ref|YP_002465671.1| - 0.029 14.6 17.9 0.029 14.6 12.4 3.5 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851239|ref|YP_002465671.1| - 0.03 14.2 2.2 0.03 14.2 1.5 3.4 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219851239|ref|YP_002465671.1| - 0.084 13.4 10.0 2.6 8.6 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|219851239|ref|YP_002465671.1| - 0.09 13.5 15.2 0.59 10.9 0.3 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|219851239|ref|YP_002465671.1| - 0.15 11.9 21.4 0.76 9.6 13.6 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851239|ref|YP_002465671.1| - 1.2 9.8 26.4 0.41 11.3 3.4 3.8 4 1 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219851239|ref|YP_002465671.1| - 2.9 8.3 19.0 2 8.8 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|219851240|ref|YP_002465672.1| - 7.4e-88 295.1 0.0 9.1e-88 294.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|219851240|ref|YP_002465672.1| - 1.3e-34 118.2 0.0 2.5e-34 117.3 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|219851240|ref|YP_002465672.1| - 2.7e-20 71.9 1.3 6.6e-20 70.6 0.9 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain zf-ISL3 PF14690.1 gi|219851241|ref|YP_002465673.1| - 9.7e-08 31.9 2.6 1.6e-07 31.2 1.8 1.3 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|219851241|ref|YP_002465673.1| - 0.053 13.3 0.5 0.14 11.9 0.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|219851241|ref|YP_002465673.1| - 0.089 13.0 0.2 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain FYVE PF01363.16 gi|219851241|ref|YP_002465673.1| - 0.22 11.4 4.4 0.67 9.9 3.1 1.7 1 1 0 1 1 1 0 FYVE zinc finger Zn_Tnp_IS1595 PF12760.2 gi|219851241|ref|YP_002465673.1| - 0.36 10.6 5.2 1.2 8.9 3.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Hydantoinase_A PF01968.13 gi|219851242|ref|YP_002465674.1| - 2.1e-06 27.0 0.0 0.02 14.0 0.0 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase ATP-grasp_3 PF02655.9 gi|219851243|ref|YP_002465675.1| - 1.8e-28 99.4 0.0 6.1e-28 97.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|219851243|ref|YP_002465675.1| - 1.1e-07 31.7 0.0 9.3e-06 25.4 0.0 2.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|219851243|ref|YP_002465675.1| - 0.005 15.6 0.0 1.2 7.7 0.0 2.7 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon SurE PF01975.12 gi|219851244|ref|YP_002465676.1| - 2.2e-56 190.2 0.1 2.8e-56 189.9 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Rib_5-P_isom_A PF06026.9 gi|219851245|ref|YP_002465677.1| - 6.7e-53 178.5 0.0 8.2e-53 178.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|219851245|ref|YP_002465677.1| - 9.2e-07 28.6 0.0 8.9e-05 22.1 0.0 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain TrmB PF01978.14 gi|219851246|ref|YP_002465678.1| - 2.1e-05 24.1 0.0 4.2e-05 23.1 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|219851246|ref|YP_002465678.1| - 0.0014 18.2 0.6 0.0028 17.2 0.1 1.8 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.12 gi|219851246|ref|YP_002465678.1| - 0.0018 17.7 0.0 0.0027 17.2 0.0 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit PadR PF03551.9 gi|219851246|ref|YP_002465678.1| - 0.0036 17.0 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|219851246|ref|YP_002465678.1| - 0.0042 17.3 0.4 0.0067 16.7 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|219851246|ref|YP_002465678.1| - 0.0043 17.0 0.0 0.0081 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|219851246|ref|YP_002465678.1| - 0.023 14.3 0.0 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|219851246|ref|YP_002465678.1| - 0.051 12.9 0.2 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|219851246|ref|YP_002465678.1| - 0.065 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein PIG-L PF02585.12 gi|219851247|ref|YP_002465679.1| - 1.1e-23 84.1 0.4 1.6e-23 83.6 0.2 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Hexapep PF00132.19 gi|219851248|ref|YP_002465680.1| - 5.6e-08 31.9 13.6 1.4e-07 30.7 2.0 2.3 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219851248|ref|YP_002465680.1| - 9.3e-07 28.3 9.4 1.8e-05 24.1 2.3 3.1 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Polysacc_synt PF01943.12 gi|219851249|ref|YP_002465681.1| - 1.2e-10 41.0 12.4 1.2e-10 41.0 8.6 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|219851249|ref|YP_002465681.1| - 4.3e-07 29.6 18.5 4.3e-07 29.6 12.8 3.3 2 2 1 3 3 3 2 Polysaccharide biosynthesis protein Thioredoxin PF00085.15 gi|219851250|ref|YP_002465682.1| - 2.8e-24 84.7 0.0 3.6e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|219851250|ref|YP_002465682.1| - 8.2e-08 32.4 0.1 5.4e-07 29.7 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|219851250|ref|YP_002465682.1| - 3e-05 23.5 0.0 4.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|219851250|ref|YP_002465682.1| - 4e-05 23.6 0.0 0.032 14.3 0.0 2.6 1 1 2 3 3 3 2 Thioredoxin-like HyaE PF07449.6 gi|219851250|ref|YP_002465682.1| - 0.0011 18.8 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Phosducin PF02114.11 gi|219851250|ref|YP_002465682.1| - 0.0057 15.4 0.0 0.0067 15.1 0.0 1.3 1 1 0 1 1 1 1 Phosducin Redoxin PF08534.5 gi|219851250|ref|YP_002465682.1| - 0.0059 16.1 0.0 0.0072 15.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF953 PF06110.6 gi|219851250|ref|YP_002465682.1| - 0.081 12.3 0.1 0.36 10.2 0.0 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DEAD PF00270.24 gi|219851251|ref|YP_002465683.1| - 1.2e-26 93.2 0.0 2e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|219851251|ref|YP_002465683.1| - 3.1e-12 46.1 0.0 1.1e-11 44.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF457 PF04307.9 gi|219851252|ref|YP_002465684.1| - 1.1e-17 63.8 10.3 1.1e-17 63.8 7.1 1.6 1 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DoxX_3 PF13781.1 gi|219851252|ref|YP_002465684.1| - 3.7 7.9 10.3 0.32 11.3 0.9 3.2 3 2 0 3 3 3 0 DoxX-like family Peptidase_M20 PF01546.23 gi|219851253|ref|YP_002465685.1| - 2.6e-35 121.6 0.0 3.7e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|219851253|ref|YP_002465685.1| - 5.2e-19 68.0 0.0 1.4e-18 66.6 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|219851253|ref|YP_002465685.1| - 0.015 15.0 0.0 0.045 13.4 0.0 1.7 2 0 0 2 2 2 0 Peptidase family M28 Peptidase_M42 PF05343.9 gi|219851253|ref|YP_002465685.1| - 0.026 13.3 0.0 0.068 11.9 0.0 1.6 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase DUF1394 PF07159.7 gi|219851253|ref|YP_002465685.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) zinc_ribbon_6 PF14599.1 gi|219851255|ref|YP_002465687.1| - 0.0012 18.5 3.5 0.05 13.3 3.1 2.0 1 1 1 2 2 2 1 Zinc-ribbon Molybdop_Fe4S4 PF04879.11 gi|219851255|ref|YP_002465687.1| - 0.016 15.0 1.9 0.019 14.7 1.3 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain OrfB_Zn_ribbon PF07282.6 gi|219851255|ref|YP_002465687.1| - 0.04 13.5 1.1 0.042 13.5 0.8 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|219851255|ref|YP_002465687.1| - 0.083 12.6 2.3 0.14 11.8 1.5 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF326 PF03860.11 gi|219851255|ref|YP_002465687.1| - 0.2 11.5 0.8 0.2 11.5 0.6 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Zn-ribbon_8 PF09723.5 gi|219851255|ref|YP_002465687.1| - 0.25 11.3 5.3 0.32 10.9 3.7 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2H2_3 PF13878.1 gi|219851255|ref|YP_002465687.1| - 1.3 8.6 3.8 0.34 10.5 0.4 1.7 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_RNApol_7kD PF03604.8 gi|219851255|ref|YP_002465687.1| - 2.1 7.8 6.5 6.6 6.2 4.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|219851255|ref|YP_002465687.1| - 5.8 6.7 7.0 27 4.6 4.9 1.9 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-trcl PF13451.1 gi|219851255|ref|YP_002465687.1| - 8.8 6.0 8.9 13 5.4 0.3 2.2 1 1 0 2 2 2 0 Probable zinc-binding domain Peptidase_M48 PF01435.13 gi|219851256|ref|YP_002465688.1| - 1e-36 126.6 0.0 1.6e-36 126.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|219851256|ref|YP_002465688.1| - 5.1e-06 25.6 0.2 5.1e-06 25.6 0.1 2.8 2 1 1 3 3 3 1 BlaR1 peptidase M56 YjgP_YjgQ PF03739.9 gi|219851256|ref|YP_002465688.1| - 0.0043 15.8 0.9 0.0043 15.8 0.6 2.2 2 0 0 2 2 2 1 Predicted permease YjgP/YjgQ family Peptidase_U49 PF10463.4 gi|219851256|ref|YP_002465688.1| - 0.012 15.4 0.1 0.038 13.7 0.0 1.8 2 0 0 2 2 2 0 Peptidase U49 DUF3784 PF12650.2 gi|219851256|ref|YP_002465688.1| - 0.047 13.6 0.3 0.047 13.6 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Peptidase_MA_2 PF13485.1 gi|219851256|ref|YP_002465688.1| - 0.081 12.9 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily DUF2207 PF09972.4 gi|219851256|ref|YP_002465688.1| - 0.095 11.2 6.9 0.65 8.5 0.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) CoA_binding_3 PF13727.1 gi|219851256|ref|YP_002465688.1| - 1.7 8.4 8.8 0.44 10.3 0.1 2.2 2 0 0 2 2 2 0 CoA-binding domain ABC2_membrane_5 PF13346.1 gi|219851256|ref|YP_002465688.1| - 2.4 7.3 16.3 0.18 11.0 1.5 2.4 2 0 0 2 2 2 0 ABC-2 family transporter protein PspB PF06667.7 gi|219851256|ref|YP_002465688.1| - 2.6 8.0 0.0 2.6 8.0 0.0 3.2 5 0 0 5 5 4 0 Phage shock protein B TcpE PF12648.2 gi|219851256|ref|YP_002465688.1| - 7.3 6.7 11.5 14 5.9 0.2 2.5 2 0 0 2 2 2 0 TcpE family Tic20 PF09685.5 gi|219851256|ref|YP_002465688.1| - 8 6.4 16.9 0.58 10.1 1.1 2.3 2 0 0 2 2 2 0 Tic20-like protein DUF1917 PF08939.5 gi|219851257|ref|YP_002465689.1| - 7.1e-35 120.9 0.0 4.2e-33 115.0 0.1 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF1917) PPR_2 PF13041.1 gi|219851257|ref|YP_002465689.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family Ribosomal_L40e PF01020.12 gi|219851258|ref|YP_002465690.1| - 7e-06 25.5 6.3 8.3e-06 25.2 4.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|219851258|ref|YP_002465690.1| - 0.0006 19.2 0.5 0.00087 18.6 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219851258|ref|YP_002465690.1| - 0.0014 18.3 1.1 0.0016 18.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219851258|ref|YP_002465690.1| - 0.0068 15.5 1.1 0.0093 15.1 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|219851258|ref|YP_002465690.1| - 0.017 14.5 3.8 0.03 13.7 2.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-DHHC PF01529.15 gi|219851258|ref|YP_002465690.1| - 0.026 13.9 0.7 0.028 13.8 0.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase FYVE PF01363.16 gi|219851258|ref|YP_002465690.1| - 0.091 12.6 2.1 0.12 12.3 1.5 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-RanBP PF00641.13 gi|219851258|ref|YP_002465690.1| - 0.31 10.1 5.2 0.82 8.8 2.6 2.0 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-tcix PF14952.1 gi|219851258|ref|YP_002465690.1| - 0.54 9.6 8.1 0.99 8.7 5.6 1.6 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.4 gi|219851258|ref|YP_002465690.1| - 0.55 9.3 6.3 1 8.4 4.0 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com DUF2082 PF09855.4 gi|219851258|ref|YP_002465690.1| - 0.86 9.4 3.1 1.5 8.7 0.2 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|219851258|ref|YP_002465690.1| - 2.2 8.0 6.1 9.5 6.0 4.2 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ham1p_like PF01725.11 gi|219851259|ref|YP_002465691.1| - 1.8e-48 164.4 0.0 2e-48 164.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family FeoB_C PF07664.7 gi|219851259|ref|YP_002465691.1| - 0.045 13.1 0.0 0.083 12.3 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus Peptidase_M22 PF00814.20 gi|219851260|ref|YP_002465692.1| - 1.4e-78 264.1 0.0 1.8e-78 263.7 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.17 gi|219851260|ref|YP_002465692.1| - 5.9e-08 32.2 0.0 9.6e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|219851260|ref|YP_002465692.1| - 2.9e-07 29.9 0.0 4.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|219851260|ref|YP_002465692.1| - 2.4e-06 26.7 0.0 4.6e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|219851260|ref|YP_002465692.1| - 1.1e-05 25.2 0.1 0.00026 20.7 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|219851260|ref|YP_002465692.1| - 0.0017 17.4 0.1 0.0035 16.4 0.1 1.4 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|219851260|ref|YP_002465692.1| - 0.023 13.8 0.1 0.036 13.2 0.1 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Ribosomal_S27 PF01599.14 gi|219851261|ref|YP_002465693.1| - 1.9e-17 62.8 3.6 2.1e-17 62.6 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|219851261|ref|YP_002465693.1| - 4.8e-05 23.0 0.6 5.6e-05 22.8 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|219851261|ref|YP_002465693.1| - 8.5e-05 21.9 2.4 0.0017 17.7 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|219851261|ref|YP_002465693.1| - 0.00034 19.7 3.4 0.00075 18.6 2.4 1.6 1 1 0 1 1 1 1 zinc-ribbon domain IBR PF01485.16 gi|219851261|ref|YP_002465693.1| - 0.001 18.8 0.3 0.001 18.8 0.2 1.1 1 0 0 1 1 1 1 IBR domain Nudix_N_2 PF14803.1 gi|219851261|ref|YP_002465693.1| - 0.0012 18.5 4.2 0.0066 16.1 2.9 1.9 1 1 0 1 1 1 1 Nudix N-terminal GFA PF04828.9 gi|219851261|ref|YP_002465693.1| - 0.0065 16.3 1.4 0.063 13.2 0.0 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|219851261|ref|YP_002465693.1| - 0.0072 15.7 2.7 0.2 11.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|219851261|ref|YP_002465693.1| - 0.0074 15.9 0.5 0.012 15.2 0.3 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Auto_anti-p27 PF06677.7 gi|219851261|ref|YP_002465693.1| - 0.011 15.4 1.4 0.085 12.6 1.4 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|219851261|ref|YP_002465693.1| - 0.012 15.2 1.0 0.013 15.1 0.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|219851261|ref|YP_002465693.1| - 0.017 14.5 0.9 0.037 13.4 0.7 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|219851261|ref|YP_002465693.1| - 0.027 14.2 0.4 0.027 14.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) HypA PF01155.14 gi|219851261|ref|YP_002465693.1| - 0.04 13.6 0.3 0.04 13.6 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|219851261|ref|YP_002465693.1| - 0.063 12.7 0.2 0.063 12.7 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) Ribosomal_L37e PF01907.14 gi|219851261|ref|YP_002465693.1| - 0.11 12.2 5.0 0.19 11.5 3.4 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e NOB1_Zn_bind PF08772.6 gi|219851261|ref|YP_002465693.1| - 0.13 12.0 3.0 0.38 10.5 2.0 1.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2082 PF09855.4 gi|219851261|ref|YP_002465693.1| - 0.14 12.0 3.2 0.38 10.6 0.4 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|219851261|ref|YP_002465693.1| - 0.29 11.4 2.0 0.51 10.6 1.3 1.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar FeS PF04060.8 gi|219851261|ref|YP_002465693.1| - 0.38 10.3 0.3 0.38 10.3 0.2 2.0 2 0 0 2 2 2 0 Putative Fe-S cluster UPF0547 PF10571.4 gi|219851261|ref|YP_002465693.1| - 0.46 10.2 4.6 2.5 7.8 3.2 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|219851261|ref|YP_002465693.1| - 0.56 10.0 4.7 1.5 8.6 3.3 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|219851261|ref|YP_002465693.1| - 0.85 9.6 4.3 21 5.1 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|219851261|ref|YP_002465693.1| - 7.9 6.6 6.9 4.9 7.2 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S24e PF01282.14 gi|219851262|ref|YP_002465694.1| - 4.6e-19 68.0 0.0 5.4e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|219851263|ref|YP_002465695.1| - 1e-34 118.5 0.0 1.3e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|219851264|ref|YP_002465696.1| - 2e-11 43.6 0.2 2.8e-11 43.1 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|219851264|ref|YP_002465696.1| - 0.0041 16.5 2.0 0.0055 16.1 1.4 1.2 1 0 0 1 1 1 1 RecR protein zf-CXXC PF02008.15 gi|219851264|ref|YP_002465696.1| - 0.042 13.6 1.1 0.056 13.2 0.8 1.2 1 0 0 1 1 1 0 CXXC zinc finger domain PHF5 PF03660.9 gi|219851264|ref|YP_002465696.1| - 0.044 13.8 0.3 0.046 13.7 0.2 1.1 1 0 0 1 1 1 0 PHF5-like protein SHS2_Rpb7-N PF03876.12 gi|219851265|ref|YP_002465697.1| - 1.9e-18 66.3 0.1 3.5e-18 65.4 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|219851265|ref|YP_002465697.1| - 8.8e-11 41.7 0.1 1.9e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|219851265|ref|YP_002465697.1| - 0.0069 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|219851266|ref|YP_002465698.1| - 1e-05 25.5 0.0 1.3e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF4411 PF14367.1 gi|219851266|ref|YP_002465698.1| - 0.0069 16.1 0.1 0.34 10.5 0.0 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF4411) PIN PF01850.16 gi|219851266|ref|YP_002465698.1| - 0.024 14.9 0.0 0.036 14.4 0.0 1.6 1 1 0 1 1 1 0 PIN domain GTP_EFTU PF00009.22 gi|219851267|ref|YP_002465699.1| - 1e-42 145.6 0.1 1.7e-42 144.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|219851267|ref|YP_002465699.1| - 1.3e-30 105.2 0.6 4.2e-30 103.6 0.4 1.9 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|219851267|ref|YP_002465699.1| - 7.7e-07 29.1 1.2 7.7e-07 29.1 0.8 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|219851267|ref|YP_002465699.1| - 4.7e-05 23.3 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|219851267|ref|YP_002465699.1| - 0.0019 17.4 1.2 0.33 10.2 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|219851267|ref|YP_002465699.1| - 0.0074 16.7 0.0 0.022 15.2 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|219851267|ref|YP_002465699.1| - 0.01 15.6 0.1 0.032 14.0 0.0 1.8 2 1 0 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|219851267|ref|YP_002465699.1| - 0.015 14.7 1.6 2.6 7.5 0.0 3.1 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation DnaJ_CXXCXGXG PF00684.14 gi|219851267|ref|YP_002465699.1| - 0.029 14.4 0.5 0.063 13.3 0.4 1.5 1 0 0 1 1 1 0 DnaJ central domain Nop10p PF04135.7 gi|219851267|ref|YP_002465699.1| - 0.06 13.0 0.6 0.11 12.1 0.4 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Septin PF00735.13 gi|219851267|ref|YP_002465699.1| - 0.085 11.8 1.3 0.63 8.9 0.0 2.2 2 0 0 2 2 2 0 Septin NOB1_Zn_bind PF08772.6 gi|219851267|ref|YP_002465699.1| - 0.098 12.4 0.2 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|219851267|ref|YP_002465699.1| - 1.9 7.7 6.1 4.1 6.7 4.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain NikR_C PF08753.6 gi|219851268|ref|YP_002465700.1| - 1.6e-28 98.3 1.1 2.2e-28 97.9 0.5 1.4 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|219851268|ref|YP_002465700.1| - 3.9e-07 29.6 0.4 7.3e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family BRX_N PF13713.1 gi|219851268|ref|YP_002465700.1| - 0.11 12.0 0.2 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 Transcription factor BRX N-terminal domain DUF2098 PF09871.4 gi|219851269|ref|YP_002465701.1| - 1.4e-16 60.1 0.0 1.5e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) MCRS_N PF13325.1 gi|219851269|ref|YP_002465701.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 N-terminal region of micro-spherule protein YcaO PF02624.11 gi|219851270|ref|YP_002465702.1| - 7.6e-64 216.2 2.2 1.1e-63 215.7 1.6 1.2 1 0 0 1 1 1 1 YcaO-like family Hist_deacetyl PF00850.14 gi|219851271|ref|YP_002465703.1| - 1.3e-77 261.1 0.0 1.6e-77 260.8 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain Lipase_GDSL_2 PF13472.1 gi|219851271|ref|YP_002465703.1| - 0.015 15.4 0.1 0.069 13.2 0.0 2.0 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Glycos_transf_1 PF00534.15 gi|219851272|ref|YP_002465704.1| - 3.8e-33 114.3 0.0 5.3e-32 110.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851272|ref|YP_002465704.1| - 2e-19 70.0 0.0 4.1e-19 69.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|219851272|ref|YP_002465704.1| - 3.2e-07 30.5 0.0 7.1e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|219851273|ref|YP_002465705.1| - 1.5e-109 365.9 0.0 1.8e-109 365.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_4 PF13692.1 gi|219851274|ref|YP_002465706.1| - 5.2e-19 68.7 0.0 9.9e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219851274|ref|YP_002465706.1| - 2.7e-11 43.8 0.0 4.4e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|219851274|ref|YP_002465706.1| - 3.6e-11 43.1 0.0 1.1e-10 41.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|219851274|ref|YP_002465706.1| - 5.9e-10 38.8 0.0 1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219851274|ref|YP_002465706.1| - 1.2e-05 25.1 0.0 3.2e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Spatacsin_C PF14649.1 gi|219851274|ref|YP_002465706.1| - 0.049 12.4 0.0 0.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Spatacsin C-terminus Desulfoferrodox PF01880.13 gi|219851275|ref|YP_002465707.1| - 2.9e-24 85.1 0.4 3.6e-24 84.8 0.3 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.7 gi|219851275|ref|YP_002465707.1| - 1e-17 63.1 6.3 1.7e-17 62.4 4.4 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|219851275|ref|YP_002465707.1| - 0.041 13.8 0.3 0.074 13.0 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Lactamase_B PF00753.22 gi|219851276|ref|YP_002465708.1| - 5.9e-22 78.2 0.1 9.7e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219851276|ref|YP_002465708.1| - 2.2e-06 27.3 0.1 3.6e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|219851276|ref|YP_002465708.1| - 0.052 13.5 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin Rubredoxin PF00301.15 gi|219851277|ref|YP_002465709.1| - 8.1e-23 80.0 1.0 8.9e-23 79.9 0.7 1.0 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|219851277|ref|YP_002465709.1| - 0.0018 17.7 0.1 0.76 9.3 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger TFIIS_C PF01096.13 gi|219851277|ref|YP_002465709.1| - 0.0021 17.6 1.7 0.73 9.5 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.1 gi|219851277|ref|YP_002465709.1| - 0.0052 17.0 0.7 2.6 8.6 0.0 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|219851277|ref|YP_002465709.1| - 0.0084 16.0 0.3 2.1 8.3 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|219851277|ref|YP_002465709.1| - 0.013 14.7 1.9 1.4 8.3 0.2 2.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|219851277|ref|YP_002465709.1| - 0.013 14.6 1.4 0.56 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-nanos PF05741.8 gi|219851277|ref|YP_002465709.1| - 0.017 15.1 0.3 5.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zinc_ribbon_2 PF13240.1 gi|219851277|ref|YP_002465709.1| - 0.02 14.3 0.5 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|219851277|ref|YP_002465709.1| - 0.028 14.0 0.1 0.69 9.6 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-RanBP PF00641.13 gi|219851277|ref|YP_002465709.1| - 0.043 12.9 0.3 0.043 12.9 0.2 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-IS66 PF13005.2 gi|219851277|ref|YP_002465709.1| - 0.051 13.5 0.6 9.5 6.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.21 gi|219851277|ref|YP_002465709.1| - 0.075 13.4 1.3 6.8 7.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Cys_rich_CPCC PF14206.1 gi|219851277|ref|YP_002465709.1| - 0.075 12.5 0.3 2.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-ISL3 PF14690.1 gi|219851277|ref|YP_002465709.1| - 0.097 12.7 0.4 1.4 9.0 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-MIZ PF02891.15 gi|219851277|ref|YP_002465709.1| - 0.098 12.1 0.8 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-C2H2_6 PF13912.1 gi|219851277|ref|YP_002465709.1| - 0.16 11.9 1.0 6.1 6.8 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.5 gi|219851277|ref|YP_002465709.1| - 0.16 11.4 1.0 8.9 5.9 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Desulfoferrod_N PF06397.7 gi|219851277|ref|YP_002465709.1| - 0.16 11.3 2.2 1.1 8.6 0.3 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C2H2_3 PF13878.1 gi|219851277|ref|YP_002465709.1| - 0.3 10.7 1.2 2.4 7.8 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO UPF0547 PF10571.4 gi|219851277|ref|YP_002465709.1| - 0.47 10.1 4.0 7.4 6.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|219851277|ref|YP_002465709.1| - 0.47 10.7 2.5 1.7 9.0 0.2 2.1 1 1 0 2 2 2 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|219851277|ref|YP_002465709.1| - 0.6 9.6 4.3 11 5.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 ADK_lid PF05191.9 gi|219851277|ref|YP_002465709.1| - 0.76 9.4 5.2 11 5.7 3.5 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid AAA_21 PF13304.1 gi|219851279|ref|YP_002465711.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain Rsm22 PF09243.5 gi|219851280|ref|YP_002465712.1| - 9e-12 44.5 0.0 1.2e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_23 PF13489.1 gi|219851280|ref|YP_002465712.1| - 0.00012 21.8 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851280|ref|YP_002465712.1| - 0.00066 20.2 0.0 0.0016 19.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851280|ref|YP_002465712.1| - 0.0017 17.9 0.0 0.0064 16.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851280|ref|YP_002465712.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851280|ref|YP_002465712.1| - 0.098 13.1 0.0 0.33 11.4 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851280|ref|YP_002465712.1| - 0.13 12.7 0.0 0.32 11.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|219851280|ref|YP_002465712.1| - 0.17 11.1 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Glycos_transf_2 PF00535.21 gi|219851281|ref|YP_002465713.1| - 7.9e-36 123.2 0.0 1.2e-35 122.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219851281|ref|YP_002465713.1| - 1.1e-18 67.9 0.0 1.6e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|219851281|ref|YP_002465713.1| - 5.4e-12 45.3 0.0 6.6e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219851281|ref|YP_002465713.1| - 0.004 17.4 0.1 0.0085 16.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 ParA PF10609.4 gi|219851283|ref|YP_002465715.1| - 1.3e-34 117.8 0.1 2.4e-34 117.0 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|219851283|ref|YP_002465715.1| - 3.8e-21 75.3 0.0 5.9e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|219851283|ref|YP_002465715.1| - 2e-12 47.2 0.0 3.8e-12 46.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|219851283|ref|YP_002465715.1| - 3.3e-09 36.1 0.0 1e-08 34.5 0.0 1.8 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|219851283|ref|YP_002465715.1| - 1e-06 28.0 0.8 2.3e-05 23.5 0.1 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|219851283|ref|YP_002465715.1| - 0.0026 17.2 0.1 0.0047 16.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|219851283|ref|YP_002465715.1| - 0.0027 17.3 0.1 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.13 gi|219851283|ref|YP_002465715.1| - 0.0041 16.3 0.1 0.012 14.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_29 PF13555.1 gi|219851283|ref|YP_002465715.1| - 0.0086 15.5 0.1 0.13 11.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_26 PF13500.1 gi|219851283|ref|YP_002465715.1| - 0.017 14.7 0.4 1.7 8.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|219851283|ref|YP_002465715.1| - 0.019 14.3 0.2 0.084 12.2 0.1 1.8 2 0 0 2 2 2 0 YhjQ protein AAA_19 PF13245.1 gi|219851283|ref|YP_002465715.1| - 0.023 14.4 1.1 0.35 10.6 0.1 2.7 3 0 0 3 3 3 0 Part of AAA domain AAA_17 PF13207.1 gi|219851283|ref|YP_002465715.1| - 0.028 15.2 0.1 0.052 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|219851283|ref|YP_002465715.1| - 0.04 12.6 0.1 0.065 11.9 0.1 1.2 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|219851283|ref|YP_002465715.1| - 0.043 14.1 0.0 0.18 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|219851283|ref|YP_002465715.1| - 0.049 13.0 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|219851283|ref|YP_002465715.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|219851283|ref|YP_002465715.1| - 0.067 12.6 0.1 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|219851283|ref|YP_002465715.1| - 0.082 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 NTPase DUF258 PF03193.11 gi|219851283|ref|YP_002465715.1| - 0.1 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|219851283|ref|YP_002465715.1| - 0.17 11.0 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Response_reg PF00072.19 gi|219851284|ref|YP_002465716.1| - 5.3e-23 81.1 0.0 1.6e-22 79.6 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|219851284|ref|YP_002465716.1| - 3.8e-18 66.4 0.1 7.2e-18 65.4 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219851284|ref|YP_002465716.1| - 1.2e-06 28.6 0.0 2.1e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|219851284|ref|YP_002465716.1| - 2.8e-05 24.3 0.0 6.1e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|219851284|ref|YP_002465716.1| - 4.3e-05 23.2 0.0 0.00011 21.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|219851284|ref|YP_002465716.1| - 0.0001 22.6 0.0 0.00045 20.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|219851284|ref|YP_002465716.1| - 0.0017 18.3 0.1 0.0043 17.0 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219851284|ref|YP_002465716.1| - 0.0048 16.7 0.2 0.1 12.4 0.0 2.5 2 0 0 2 2 2 1 PAS domain Glyco_transf_36 PF06165.6 gi|219851285|ref|YP_002465717.1| - 4.5e-76 251.7 0.0 9.5e-40 134.8 0.0 3.0 3 0 0 3 3 3 2 Glycosyltransferase family 36 Glycoamylase PF10091.4 gi|219851285|ref|YP_002465717.1| - 3.2e-70 235.8 0.2 2.7e-69 232.8 0.1 2.1 2 0 0 2 2 2 1 Putative glucoamylase GT36_AF PF06205.6 gi|219851285|ref|YP_002465717.1| - 3.4e-55 183.7 0.0 5.7e-30 102.9 0.0 2.5 2 0 0 2 2 2 2 Glycosyltransferase 36 associated family CBM_X PF06204.6 gi|219851285|ref|YP_002465717.1| - 2.8e-47 158.0 3.9 8.8e-26 89.1 0.2 3.4 3 0 0 3 3 3 2 Putative carbohydrate binding domain DUF608 PF04685.8 gi|219851285|ref|YP_002465717.1| - 0.00023 20.0 0.0 0.00038 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 DUF3131 PF11329.3 gi|219851285|ref|YP_002465717.1| - 0.12 10.9 0.1 0.26 9.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3131) P4Ha_N PF08336.6 gi|219851285|ref|YP_002465717.1| - 0.33 10.7 0.1 0.83 9.4 0.0 1.6 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region UvrD-helicase PF00580.16 gi|219851287|ref|YP_002465719.1| - 7e-60 202.9 1.1 2.8e-59 200.9 0.8 1.9 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|219851287|ref|YP_002465719.1| - 1e-47 163.3 0.0 5e-47 161.0 0.0 1.9 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|219851287|ref|YP_002465719.1| - 2.3e-43 148.4 0.0 5.4e-43 147.2 0.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|219851287|ref|YP_002465719.1| - 1.1e-12 47.5 0.0 3.8e-12 45.7 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|219851287|ref|YP_002465719.1| - 2.4e-10 40.4 0.2 2.3e-09 37.3 0.2 2.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Cas_Cas4 PF01930.12 gi|219851287|ref|YP_002465719.1| - 4.9e-10 39.5 0.0 1.2e-09 38.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF83 Viral_helicase1 PF01443.13 gi|219851287|ref|YP_002465719.1| - 1.3e-06 28.0 0.0 0.94 8.9 0.0 4.1 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|219851287|ref|YP_002465719.1| - 0.0012 18.4 0.0 0.012 15.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Exonuc_V_gamma PF04257.9 gi|219851287|ref|YP_002465719.1| - 0.0051 14.8 0.0 0.0081 14.2 0.0 1.2 1 0 0 1 1 1 1 Exodeoxyribonuclease V, gamma subunit AAA_11 PF13086.1 gi|219851287|ref|YP_002465719.1| - 0.0079 15.8 0.0 0.017 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851287|ref|YP_002465719.1| - 0.025 14.5 0.2 0.17 11.8 0.2 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_12 PF13087.1 gi|219851287|ref|YP_002465719.1| - 0.035 13.4 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Oxidored_molyb PF00174.14 gi|219851288|ref|YP_002465720.1| - 0.0016 17.8 0.0 0.0043 16.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase molybdopterin binding domain DUF1929 PF09118.6 gi|219851288|ref|YP_002465720.1| - 0.0094 16.0 0.1 0.028 14.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1929) PKD PF00801.15 gi|219851288|ref|YP_002465720.1| - 0.38 10.5 8.7 0.17 11.6 3.1 2.7 2 0 0 2 2 2 0 PKD domain PDDEXK_1 PF12705.2 gi|219851291|ref|YP_002465723.1| - 4.3e-07 29.5 0.0 4.5e-07 29.5 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3363 PF11843.3 gi|219851291|ref|YP_002465723.1| - 0.062 11.9 0.0 0.08 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) ABA_GPCR PF12430.3 gi|219851292|ref|YP_002465724.1| - 0.016 14.3 5.8 0.023 13.8 4.0 1.2 1 0 0 1 1 1 0 Abscisic acid G-protein coupled receptor Glt_symporter PF03616.9 gi|219851292|ref|YP_002465724.1| - 0.077 11.4 5.9 0.094 11.1 4.1 1.1 1 0 0 1 1 1 0 Sodium/glutamate symporter TraG_N PF07916.6 gi|219851292|ref|YP_002465724.1| - 2.5 6.4 6.5 3.2 6.1 4.5 1.2 1 0 0 1 1 1 0 TraG-like protein, N-terminal region DUF544 PF04424.8 gi|219851293|ref|YP_002465725.1| - 0.02 14.7 0.5 0.055 13.2 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF544) PDDEXK_1 PF12705.2 gi|219851294|ref|YP_002465726.1| - 5.5e-28 98.0 0.2 6.4e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|219851294|ref|YP_002465726.1| - 1e-06 28.7 0.6 8.5e-06 25.7 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 His_Phos_1 PF00300.17 gi|219851297|ref|YP_002465729.1| - 9.4e-44 149.2 0.0 1.2e-43 148.9 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) HATPase_c_4 PF13749.1 gi|219851299|ref|YP_002465731.1| - 2.7e-21 75.1 0.0 5.5e-21 74.1 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|219851299|ref|YP_002465731.1| - 5e-15 55.7 0.0 9e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain DUF977 PF06163.6 gi|219851299|ref|YP_002465731.1| - 0.00046 19.9 0.4 0.00097 18.8 0.3 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_27 PF13463.1 gi|219851299|ref|YP_002465731.1| - 0.013 15.8 0.1 0.84 10.0 0.1 2.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain SelB-wing_3 PF09107.6 gi|219851299|ref|YP_002465731.1| - 0.093 12.1 0.1 0.3 10.4 0.1 1.9 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Rbsn PF11464.3 gi|219851299|ref|YP_002465731.1| - 0.1 12.2 0.3 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Rabenosyn Rab binding domain Cache_2 PF08269.6 gi|219851300|ref|YP_002465732.1| - 1.3e-09 37.9 0.0 2.6e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Cache domain DUF3153 PF11353.3 gi|219851300|ref|YP_002465732.1| - 0.0053 16.2 0.0 0.0072 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3153) Cap_synth_GfcB PF11102.3 gi|219851300|ref|YP_002465732.1| - 0.081 12.4 1.1 0.21 11.1 0.1 1.8 2 0 0 2 2 2 0 Group 4 capsule polysaccharide formation lipoprotein gfcB zf-ribbon_3 PF13248.1 gi|219851301|ref|YP_002465733.1| - 0.011 14.8 0.7 0.026 13.7 0.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|219851301|ref|YP_002465733.1| - 0.013 15.7 0.1 0.022 15.0 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|219851301|ref|YP_002465733.1| - 0.017 14.7 0.3 8.2 6.1 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF2387 PF09526.5 gi|219851301|ref|YP_002465733.1| - 0.024 14.5 0.9 0.069 13.0 0.1 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.1 gi|219851301|ref|YP_002465733.1| - 0.048 13.3 0.5 19 5.0 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|219851301|ref|YP_002465733.1| - 0.052 13.3 0.1 0.53 10.1 0.0 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2296 PF10058.4 gi|219851301|ref|YP_002465733.1| - 0.22 11.2 1.4 0.79 9.5 0.9 1.9 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF1610 PF07754.6 gi|219851301|ref|YP_002465733.1| - 0.44 10.7 2.4 2 8.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) B12-binding PF02310.14 gi|219851304|ref|YP_002465736.1| - 2.2e-24 85.6 0.1 6.8e-24 84.0 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|219851304|ref|YP_002465736.1| - 4.4e-23 82.2 0.0 4.5e-22 78.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily CitMHS PF03600.11 gi|219851305|ref|YP_002465737.1| - 2.2e-30 105.4 26.9 1.1e-29 103.1 15.0 2.0 1 1 1 2 2 2 2 Citrate transporter DUF3094 PF11293.3 gi|219851305|ref|YP_002465737.1| - 0.37 10.2 4.2 2 7.9 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) Pirin PF02678.11 gi|219851306|ref|YP_002465738.1| - 3.5e-35 120.1 0.1 5.5e-35 119.4 0.1 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|219851306|ref|YP_002465738.1| - 1.4e-31 108.6 0.0 1e-30 105.8 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Lactamase_B PF00753.22 gi|219851307|ref|YP_002465739.1| - 1.8e-25 89.7 0.5 2.3e-25 89.3 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219851307|ref|YP_002465739.1| - 4.4e-05 23.1 0.0 4.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.1 gi|219851307|ref|YP_002465739.1| - 0.011 15.1 0.0 0.027 13.8 0.0 1.6 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Methyltransf_12 PF08242.7 gi|219851308|ref|YP_002465740.1| - 5.5e-09 36.4 0.0 9e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851308|ref|YP_002465740.1| - 2.8e-08 34.3 0.0 4.4e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851308|ref|YP_002465740.1| - 1.3e-07 31.4 0.0 2.3e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851308|ref|YP_002465740.1| - 0.00033 21.0 0.0 0.00054 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851308|ref|YP_002465740.1| - 0.0017 18.6 0.0 0.003 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851308|ref|YP_002465740.1| - 0.006 16.1 0.0 0.0083 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851308|ref|YP_002465740.1| - 0.0087 16.0 0.1 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_28 PF02636.12 gi|219851308|ref|YP_002465740.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.13 gi|219851308|ref|YP_002465740.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CheR PF01739.13 gi|219851308|ref|YP_002465740.1| - 0.15 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain Cys_Met_Meta_PP PF01053.15 gi|219851309|ref|YP_002465741.1| - 4.3e-117 390.6 0.0 4.8e-117 390.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|219851309|ref|YP_002465741.1| - 2.8e-11 43.0 0.1 4.6e-11 42.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|219851309|ref|YP_002465741.1| - 4.8e-09 35.4 0.1 5.5e-08 31.9 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219851309|ref|YP_002465741.1| - 2.9e-06 26.6 0.1 1e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|219851309|ref|YP_002465741.1| - 0.00049 19.1 0.0 0.00081 18.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.6 gi|219851309|ref|YP_002465741.1| - 0.012 13.9 0.0 0.024 12.9 0.0 1.6 1 1 0 1 1 1 0 Methionine gamma-lyase DUF2839 PF10999.3 gi|219851311|ref|YP_002465743.1| - 0.013 15.4 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2839) DUF2099 PF09872.4 gi|219851312|ref|YP_002465744.1| - 2e-103 344.9 1.4 2.3e-103 344.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Zip PF02535.17 gi|219851313|ref|YP_002465745.1| - 8.7e-09 34.8 19.8 3.9e-08 32.6 7.7 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter TM_helix PF05552.7 gi|219851313|ref|YP_002465745.1| - 0.037 13.7 0.1 0.037 13.7 0.0 3.0 3 0 0 3 3 3 0 Conserved TM helix PDGLE PF13190.1 gi|219851313|ref|YP_002465745.1| - 8.7 6.1 10.8 0.11 12.1 0.7 2.8 2 1 1 3 3 3 0 PDGLE domain DUF2252 PF10009.4 gi|219851314|ref|YP_002465746.1| - 1.7e-133 445.2 0.0 2e-133 445.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2252) FliO PF04347.8 gi|219851314|ref|YP_002465746.1| - 0.11 12.5 0.1 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Flagellar biosynthesis protein, FliO Cupredoxin_1 PF13473.1 gi|219851315|ref|YP_002465747.1| - 1.2e-08 34.7 0.0 1.8e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain MacB_PCD PF12704.2 gi|219851316|ref|YP_002465748.1| - 0.022 14.3 0.3 0.022 14.3 0.2 2.1 1 1 0 3 3 3 0 MacB-like periplasmic core domain E1-E2_ATPase PF00122.15 gi|219851317|ref|YP_002465749.1| - 8.7e-63 211.4 5.5 1.8e-62 210.4 3.8 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|219851317|ref|YP_002465749.1| - 8.8e-51 173.3 1.5 1.8e-50 172.3 1.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219851317|ref|YP_002465749.1| - 2.8e-17 63.5 0.0 6.5e-17 62.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|219851317|ref|YP_002465749.1| - 4.5e-13 49.1 0.0 1.1e-12 47.9 0.0 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|219851317|ref|YP_002465749.1| - 8.1e-05 22.3 0.3 0.00019 21.1 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CoA_binding_2 PF13380.1 gi|219851317|ref|YP_002465749.1| - 0.067 13.3 0.2 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain HMA PF00403.21 gi|219851318|ref|YP_002465750.1| - 1.7e-07 31.2 0.0 2.8e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2678 PF10856.3 gi|219851318|ref|YP_002465750.1| - 0.006 16.3 0.5 0.015 15.0 0.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2678) Gly-zipper_Omp PF13488.1 gi|219851318|ref|YP_002465750.1| - 2.2 7.9 12.6 0.49 10.0 6.1 1.9 1 1 0 1 1 1 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|219851318|ref|YP_002465750.1| - 3.3 7.2 13.4 0.06 12.8 4.3 1.9 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF456 PF04306.8 gi|219851318|ref|YP_002465750.1| - 7.1 6.6 27.7 4.3e+02 0.8 19.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF456) HemY_N PF07219.8 gi|219851318|ref|YP_002465750.1| - 9.6 5.8 6.5 1.8 8.1 1.0 2.2 2 0 0 2 2 2 0 HemY protein N-terminus HMA PF00403.21 gi|219851319|ref|YP_002465751.1| - 2.9e-14 52.9 0.1 3.1e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.12 gi|219851319|ref|YP_002465751.1| - 0.014 14.9 0.0 0.02 14.4 0.0 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA NapD PF03927.8 gi|219851319|ref|YP_002465751.1| - 0.027 14.3 0.2 0.033 14.0 0.1 1.1 1 0 0 1 1 1 0 NapD protein HTH_24 PF13412.1 gi|219851320|ref|YP_002465752.1| - 3.3e-13 48.7 0.0 1.6e-09 36.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|219851320|ref|YP_002465752.1| - 2.1e-10 40.2 0.2 0.00048 19.8 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain PaaX PF07848.7 gi|219851320|ref|YP_002465752.1| - 5.9e-06 26.1 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein MarR PF01047.17 gi|219851320|ref|YP_002465752.1| - 1.7e-05 24.4 0.1 0.00054 19.6 0.0 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|219851320|ref|YP_002465752.1| - 3.2e-05 23.5 0.0 0.012 15.3 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|219851320|ref|YP_002465752.1| - 0.00051 20.3 0.2 0.003 17.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|219851320|ref|YP_002465752.1| - 0.00056 19.8 0.0 0.021 14.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|219851320|ref|YP_002465752.1| - 0.00057 19.4 0.0 0.034 13.8 0.0 2.3 2 0 0 2 2 2 1 HTH domain GntR PF00392.16 gi|219851320|ref|YP_002465752.1| - 0.00066 19.0 0.0 0.072 12.5 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|219851320|ref|YP_002465752.1| - 0.00069 19.2 0.1 0.004 16.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|219851320|ref|YP_002465752.1| - 0.00084 18.9 0.0 0.023 14.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|219851320|ref|YP_002465752.1| - 0.0035 17.7 0.0 0.07 13.5 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal HTH_29 PF13551.1 gi|219851320|ref|YP_002465752.1| - 0.0035 17.4 0.1 0.053 13.6 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn helix BiPBP_C PF06832.7 gi|219851320|ref|YP_002465752.1| - 0.0091 15.9 0.0 0.035 14.0 0.0 1.8 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family Rrf2 PF02082.15 gi|219851320|ref|YP_002465752.1| - 0.012 15.6 0.0 0.075 13.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|219851320|ref|YP_002465752.1| - 0.013 15.5 0.0 0.036 14.1 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HTH_AsnC-type PF13404.1 gi|219851320|ref|YP_002465752.1| - 0.017 14.6 0.1 0.071 12.6 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|219851320|ref|YP_002465752.1| - 0.019 14.5 0.2 0.085 12.5 0.0 2.1 3 0 0 3 3 2 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|219851320|ref|YP_002465752.1| - 0.026 14.4 0.0 0.086 12.7 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.9 gi|219851320|ref|YP_002465752.1| - 0.043 13.5 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family HTH_Tnp_Tc3_2 PF01498.13 gi|219851320|ref|YP_002465752.1| - 0.066 13.2 0.1 3.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Transposase GerE PF00196.14 gi|219851320|ref|YP_002465752.1| - 0.08 12.2 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family NAD_kinase PF01513.16 gi|219851321|ref|YP_002465753.1| - 8.6e-46 155.9 0.1 1.1e-45 155.6 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DeoRC PF00455.17 gi|219851321|ref|YP_002465753.1| - 9e-06 25.4 0.1 1.7e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain DAGK_cat PF00781.19 gi|219851321|ref|YP_002465753.1| - 0.00011 21.6 0.1 0.00055 19.3 0.0 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PALP PF00291.20 gi|219851322|ref|YP_002465754.1| - 3.8e-43 147.8 0.0 4.7e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPR_11 PF13414.1 gi|219851323|ref|YP_002465755.1| - 8.3e-22 76.6 9.6 2.4e-08 33.5 0.6 3.2 2 1 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|219851323|ref|YP_002465755.1| - 1.5e-19 68.2 7.9 3.4e-05 23.4 1.0 5.3 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219851323|ref|YP_002465755.1| - 3.1e-17 62.7 7.1 8.8e-08 32.6 2.2 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219851323|ref|YP_002465755.1| - 7.3e-15 54.5 5.7 2.7e-06 27.1 0.1 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219851323|ref|YP_002465755.1| - 7.2e-14 51.0 10.7 0.0055 17.2 0.1 5.0 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219851323|ref|YP_002465755.1| - 1.7e-12 46.4 9.8 3.3e-05 23.2 1.1 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219851323|ref|YP_002465755.1| - 1.8e-10 41.0 2.7 2.9e-06 27.5 0.2 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219851323|ref|YP_002465755.1| - 8.9e-10 38.0 9.0 0.0079 16.3 0.1 5.7 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219851323|ref|YP_002465755.1| - 3.2e-06 26.5 5.6 0.07 12.9 0.3 3.7 3 1 1 4 4 4 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|219851323|ref|YP_002465755.1| - 3.2e-05 22.8 0.0 0.093 11.4 0.0 2.6 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_12 PF13424.1 gi|219851323|ref|YP_002465755.1| - 0.00013 21.8 8.8 0.14 12.1 0.0 3.3 1 1 3 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|219851323|ref|YP_002465755.1| - 0.005 16.9 0.1 0.081 13.0 0.0 2.1 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|219851323|ref|YP_002465755.1| - 0.012 16.0 7.7 0.66 10.5 0.2 4.1 4 1 0 4 4 4 0 Tetratricopeptide repeat PBP_sp32 PF07222.7 gi|219851323|ref|YP_002465755.1| - 0.18 10.9 0.1 0.26 10.4 0.1 1.1 1 0 0 1 1 1 0 Proacrosin binding protein sp32 Abi PF02517.11 gi|219851324|ref|YP_002465756.1| - 0.011 15.8 0.9 0.012 15.6 0.6 1.2 1 0 0 1 1 1 0 CAAX protease self-immunity Pyr_redox_2 PF07992.9 gi|219851325|ref|YP_002465757.1| - 2e-26 93.1 0.1 2.7e-26 92.7 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|219851325|ref|YP_002465757.1| - 7.9e-20 70.9 0.0 1.3e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|219851325|ref|YP_002465757.1| - 1.1e-11 45.0 0.0 2.5e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|219851325|ref|YP_002465757.1| - 0.00033 19.6 3.1 0.32 9.8 0.1 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|219851325|ref|YP_002465757.1| - 0.0015 17.4 0.1 0.0087 14.9 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|219851325|ref|YP_002465757.1| - 0.02 14.9 2.1 0.057 13.4 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|219851325|ref|YP_002465757.1| - 0.031 13.9 0.2 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|219851325|ref|YP_002465757.1| - 0.05 12.0 0.0 5.2 5.4 0.0 2.3 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.12 gi|219851325|ref|YP_002465757.1| - 0.077 12.0 0.2 1.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Thi4 family PAS_4 PF08448.5 gi|219851326|ref|YP_002465758.1| - 5.2e-43 145.5 0.1 1.3e-17 63.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|219851326|ref|YP_002465758.1| - 2.9e-42 143.2 0.1 4.5e-19 68.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219851326|ref|YP_002465758.1| - 1.9e-31 108.1 0.2 6.9e-14 51.5 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|219851326|ref|YP_002465758.1| - 1.7e-29 101.7 0.0 4.5e-29 100.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219851326|ref|YP_002465758.1| - 8.6e-25 86.6 0.1 2.3e-14 53.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219851326|ref|YP_002465758.1| - 6.2e-16 57.6 0.0 6.9e-07 28.9 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|219851326|ref|YP_002465758.1| - 4.2e-13 49.0 1.4 8e-11 41.7 0.0 3.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|219851326|ref|YP_002465758.1| - 8.5e-10 38.8 0.1 0.00036 20.7 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|219851326|ref|YP_002465758.1| - 3.3e-09 36.7 0.0 0.0032 17.4 0.0 3.3 2 1 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.1 gi|219851326|ref|YP_002465758.1| - 3.5e-05 23.4 0.0 7.2e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.1 gi|219851326|ref|YP_002465758.1| - 0.0024 17.7 0.1 0.31 11.0 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|219851326|ref|YP_002465758.1| - 0.013 15.2 0.0 0.037 13.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|219851326|ref|YP_002465758.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_2 PF08446.6 gi|219851326|ref|YP_002465758.1| - 0.068 13.6 0.0 2 8.9 0.0 2.6 2 0 0 2 2 2 0 PAS fold MEKHLA PF08670.6 gi|219851326|ref|YP_002465758.1| - 0.15 11.6 0.1 0.47 9.9 0.0 1.9 2 0 0 2 2 1 0 MEKHLA domain RyR PF02026.11 gi|219851327|ref|YP_002465759.1| - 9.2e-14 51.2 0.0 4e-11 42.7 0.0 2.4 1 1 1 2 2 2 2 RyR domain AAA PF00004.24 gi|219851327|ref|YP_002465759.1| - 0.00035 20.7 0.0 0.0011 19.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|219851327|ref|YP_002465759.1| - 0.018 14.7 0.0 0.12 12.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|219851327|ref|YP_002465759.1| - 0.039 13.8 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|219851327|ref|YP_002465759.1| - 0.051 14.3 0.0 0.5 11.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|219851327|ref|YP_002465759.1| - 0.059 13.5 0.0 0.42 10.7 0.0 2.4 2 2 1 3 3 3 0 AAA domain KAP_NTPase PF07693.9 gi|219851327|ref|YP_002465759.1| - 0.075 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|219851327|ref|YP_002465759.1| - 0.096 11.7 0.0 8.5 5.4 0.0 2.8 3 0 0 3 3 3 0 Zeta toxin Torsin PF06309.6 gi|219851327|ref|YP_002465759.1| - 0.17 11.7 0.0 0.38 10.6 0.0 1.5 1 0 0 1 1 1 0 Torsin DUF1128 PF06569.6 gi|219851327|ref|YP_002465759.1| - 0.17 11.6 0.0 0.39 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) TetR_N PF00440.18 gi|219851328|ref|YP_002465760.1| - 3.8e-17 61.6 0.3 1.2e-16 60.0 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|219851328|ref|YP_002465760.1| - 0.011 16.2 0.0 0.034 14.7 0.0 1.8 1 0 0 1 1 1 0 WHG domain FMN_red PF03358.10 gi|219851329|ref|YP_002465761.1| - 1.1e-21 76.8 0.0 1.7e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851329|ref|YP_002465761.1| - 8.9e-11 41.6 0.0 1.2e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold GCV_T PF01571.16 gi|219851329|ref|YP_002465761.1| - 0.026 13.8 0.0 0.56 9.5 0.0 2.0 1 1 1 2 2 2 0 Aminomethyltransferase folate-binding domain FMN_red PF03358.10 gi|219851330|ref|YP_002465762.1| - 8.2e-19 67.6 0.0 1e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851330|ref|YP_002465762.1| - 1e-07 31.6 0.0 1.8e-07 30.8 0.0 1.4 2 0 0 2 2 2 1 Flavodoxin-like fold DUF3735 PF12537.3 gi|219851331|ref|YP_002465763.1| - 0.2 11.7 1.2 0.29 11.1 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3735) FAD_binding_8 PF08022.7 gi|219851332|ref|YP_002465764.1| - 0.0086 15.9 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 FAD-binding domain FAD_binding_6 PF00970.19 gi|219851332|ref|YP_002465764.1| - 0.031 14.3 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain GSDH PF07995.6 gi|219851333|ref|YP_002465765.1| - 5e-28 98.1 0.0 8.3e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase CBM_6 PF03422.10 gi|219851333|ref|YP_002465765.1| - 1.2e-14 54.5 11.5 1.7e-14 54.0 0.5 3.0 2 0 0 2 2 2 1 Carbohydrate binding module (family 6) Cupredoxin_1 PF13473.1 gi|219851333|ref|YP_002465765.1| - 7e-10 38.7 0.2 1.9e-09 37.3 0.1 1.8 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|219851333|ref|YP_002465765.1| - 2.7e-08 33.9 0.1 6.6e-08 32.6 0.1 1.7 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF1034 PF06280.7 gi|219851333|ref|YP_002465765.1| - 1 9.7 10.0 0.053 13.9 2.4 2.3 2 0 0 2 2 2 0 Fn3-like domain (DUF1034) Aminotran_4 PF01063.14 gi|219851335|ref|YP_002465767.1| - 5.5e-50 169.9 0.0 6.4e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV GATase_3 PF07685.9 gi|219851336|ref|YP_002465768.1| - 2.8e-28 98.4 0.0 5.4e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|219851336|ref|YP_002465768.1| - 2.5e-19 69.4 0.0 4.3e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|219851336|ref|YP_002465768.1| - 7.6e-17 61.5 0.4 6e-11 42.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Oxidored_nitro PF00148.14 gi|219851337|ref|YP_002465769.1| - 3.7e-17 62.0 0.1 5.1e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Mur_ligase_M PF08245.7 gi|219851338|ref|YP_002465770.1| - 0.014 15.4 0.3 0.022 14.7 0.2 1.3 1 0 0 1 1 1 0 Mur ligase middle domain CbiX PF01903.12 gi|219851339|ref|YP_002465771.1| - 1.8e-21 76.2 0.0 2e-21 76.0 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|219851339|ref|YP_002465771.1| - 8.5e-06 25.0 0.0 8.7e-06 25.0 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|219851339|ref|YP_002465771.1| - 0.053 12.4 0.0 0.071 12.0 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Hjc PF01870.13 gi|219851340|ref|YP_002465772.1| - 0.00051 19.5 0.0 0.00071 19.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Dus PF01207.12 gi|219851341|ref|YP_002465773.1| - 3.6e-06 26.0 0.0 2.8e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Ribul_P_3_epim PF00834.14 gi|219851341|ref|YP_002465773.1| - 0.16 11.0 0.1 0.42 9.6 0.0 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CitG PF01874.11 gi|219851342|ref|YP_002465774.1| - 3e-70 236.5 1.0 3.5e-70 236.3 0.7 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|219851343|ref|YP_002465775.1| - 1.5e-42 145.1 0.0 1.7e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) NosD PF05048.8 gi|219851344|ref|YP_002465776.1| - 7.2e-41 139.8 16.1 7.2e-41 139.8 11.1 1.6 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219851344|ref|YP_002465776.1| - 9.2e-17 61.2 28.4 9.2e-17 61.2 19.7 2.1 2 1 0 2 2 2 1 Right handed beta helix region DUF3105 PF11303.3 gi|219851344|ref|YP_002465776.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3105) Arc_PepC_II PF06847.6 gi|219851345|ref|YP_002465777.1| - 3.9e-15 56.0 0.0 2.4e-14 53.5 0.0 2.2 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|219851345|ref|YP_002465777.1| - 5.5e-09 36.1 11.9 1.2e-08 35.0 8.3 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family PRA-CH PF01502.13 gi|219851346|ref|YP_002465778.1| - 3.2e-35 119.5 0.5 4.2e-35 119.1 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SE PF00437.15 gi|219851347|ref|YP_002465779.1| - 5.5e-12 45.1 0.2 1.1e-11 44.1 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.16 gi|219851347|ref|YP_002465779.1| - 5.9e-06 26.6 0.0 2.7e-05 24.4 0.0 2.2 2 0 0 2 2 1 1 PIN domain AAA_5 PF07728.9 gi|219851347|ref|YP_002465779.1| - 1.1e-05 25.1 0.0 2.3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) KH_1 PF00013.24 gi|219851347|ref|YP_002465779.1| - 1.1e-05 24.9 0.9 3.7e-05 23.2 0.6 2.0 1 0 0 1 1 1 1 KH domain AAA_25 PF13481.1 gi|219851347|ref|YP_002465779.1| - 3.8e-05 23.1 0.0 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851347|ref|YP_002465779.1| - 0.00012 22.1 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|219851347|ref|YP_002465779.1| - 0.0002 21.0 0.1 0.00064 19.4 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|219851347|ref|YP_002465779.1| - 0.0004 19.5 0.0 0.00082 18.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin PIN_4 PF13638.1 gi|219851347|ref|YP_002465779.1| - 0.00047 20.2 0.0 0.00083 19.4 0.0 1.4 1 0 0 1 1 1 1 PIN domain NTPase_1 PF03266.10 gi|219851347|ref|YP_002465779.1| - 0.001 18.8 0.0 0.0052 16.5 0.0 2.2 2 1 1 3 3 2 1 NTPase UPF0079 PF02367.12 gi|219851347|ref|YP_002465779.1| - 0.0021 17.6 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|219851347|ref|YP_002465779.1| - 0.0024 17.9 0.0 0.0086 16.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|219851347|ref|YP_002465779.1| - 0.0039 16.8 0.0 0.008 15.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain KH_2 PF07650.12 gi|219851347|ref|YP_002465779.1| - 0.004 16.6 0.6 0.014 14.9 0.4 2.0 1 0 0 1 1 1 1 KH domain AAA PF00004.24 gi|219851347|ref|YP_002465779.1| - 0.0045 17.1 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|219851347|ref|YP_002465779.1| - 0.0045 17.2 0.0 0.011 16.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|219851347|ref|YP_002465779.1| - 0.0077 15.8 0.1 0.023 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|219851347|ref|YP_002465779.1| - 0.0091 15.4 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|219851347|ref|YP_002465779.1| - 0.0098 16.1 0.0 0.047 13.9 0.0 2.1 2 0 0 2 2 2 1 ABC transporter Thymidylate_kin PF02223.12 gi|219851347|ref|YP_002465779.1| - 0.011 15.1 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase ArgK PF03308.11 gi|219851347|ref|YP_002465779.1| - 0.012 14.3 0.0 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|219851347|ref|YP_002465779.1| - 0.014 14.9 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KH_3 PF13014.1 gi|219851347|ref|YP_002465779.1| - 0.028 14.0 0.1 0.22 11.2 0.0 2.5 2 0 0 2 2 2 0 KH domain AAA_33 PF13671.1 gi|219851347|ref|YP_002465779.1| - 0.032 14.1 0.0 0.072 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|219851347|ref|YP_002465779.1| - 0.034 13.2 0.0 0.062 12.3 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_10 PF12846.2 gi|219851347|ref|YP_002465779.1| - 0.037 13.4 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|219851347|ref|YP_002465779.1| - 0.04 13.4 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|219851347|ref|YP_002465779.1| - 0.064 12.7 0.3 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|219851347|ref|YP_002465779.1| - 0.079 12.4 0.0 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|219851347|ref|YP_002465779.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|219851347|ref|YP_002465779.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|219851347|ref|YP_002465779.1| - 0.11 12.3 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|219851347|ref|YP_002465779.1| - 0.12 11.6 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|219851347|ref|YP_002465779.1| - 0.17 12.0 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase tRNA-synt_1 PF00133.17 gi|219851348|ref|YP_002465780.1| - 5.4e-52 176.6 0.0 7.1e-45 153.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|219851348|ref|YP_002465780.1| - 9.5e-25 87.0 1.2 1.8e-08 33.4 0.1 4.1 4 0 0 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|219851348|ref|YP_002465780.1| - 4e-20 72.1 0.2 8.4e-20 71.0 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|219851348|ref|YP_002465780.1| - 1.8e-06 27.3 0.0 0.0055 15.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|219851348|ref|YP_002465780.1| - 5.4e-06 25.3 0.0 0.0031 16.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|219851348|ref|YP_002465780.1| - 2.5e-05 23.6 0.1 5.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|219851348|ref|YP_002465780.1| - 0.0015 17.4 0.0 0.023 13.5 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|219851348|ref|YP_002465780.1| - 0.22 10.5 0.0 0.49 9.4 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) PAC2 PF09754.4 gi|219851350|ref|YP_002465782.1| - 9.9e-45 153.0 0.1 1.2e-44 152.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.7 gi|219851351|ref|YP_002465783.1| - 1.1e-38 131.5 0.1 1.2e-38 131.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) DUF3487 PF11990.3 gi|219851351|ref|YP_002465783.1| - 0.059 12.7 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) GIDA_assoc_3 PF13932.1 gi|219851351|ref|YP_002465783.1| - 0.094 12.7 0.0 0.39 10.7 0.0 2.0 2 0 0 2 2 2 0 GidA associated domain 3 Radical_SAM PF04055.16 gi|219851352|ref|YP_002465784.1| - 9e-13 48.7 0.0 1.3e-11 44.9 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219851352|ref|YP_002465784.1| - 7.8e-09 35.5 0.0 1.8e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219851352|ref|YP_002465784.1| - 3.2e-08 33.8 0.0 7.2e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1g PF09334.6 gi|219851353|ref|YP_002465785.1| - 9.7e-143 475.5 0.0 1.2e-142 475.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|219851353|ref|YP_002465785.1| - 1.8e-26 91.8 0.0 3.5e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|219851353|ref|YP_002465785.1| - 1.8e-18 65.8 0.5 8.2e-09 34.0 0.3 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|219851353|ref|YP_002465785.1| - 1e-14 54.5 0.1 1.6e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|219851353|ref|YP_002465785.1| - 2e-12 46.8 0.0 2.9e-09 36.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|219851353|ref|YP_002465785.1| - 0.0039 16.0 0.3 0.15 10.8 0.1 2.2 1 1 1 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|219851353|ref|YP_002465785.1| - 0.024 13.3 0.0 0.31 9.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.2 gi|219851353|ref|YP_002465785.1| - 0.074 12.8 7.4 1.2 9.0 5.1 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219851353|ref|YP_002465785.1| - 0.11 11.7 8.8 0.28 10.4 3.4 2.8 1 1 1 2 2 2 0 zinc-ribbon domain HEAT_2 PF13646.1 gi|219851355|ref|YP_002465787.1| - 4.3e-41 139.1 2.2 3.3e-18 65.7 0.0 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|219851355|ref|YP_002465787.1| - 1.8e-26 89.8 0.0 0.00023 21.0 0.0 5.8 6 0 0 6 6 6 5 HEAT repeat HEAT_PBS PF03130.11 gi|219851355|ref|YP_002465787.1| - 4.9e-21 73.0 12.6 8.4e-05 22.6 0.0 5.6 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219851355|ref|YP_002465787.1| - 2.4e-16 59.6 4.4 0.0019 18.6 0.1 5.7 3 2 3 6 6 6 5 HEAT-like repeat Arm PF00514.18 gi|219851355|ref|YP_002465787.1| - 2.1e-08 33.6 2.2 0.011 15.5 0.0 5.9 4 1 2 6 6 6 1 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|219851355|ref|YP_002465787.1| - 2.3e-06 27.8 0.0 3 8.2 0.0 4.1 3 1 1 4 4 4 2 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.15 gi|219851355|ref|YP_002465787.1| - 0.00099 17.5 0.0 2.4 6.3 0.0 3.3 1 1 1 3 3 3 2 Adaptin N terminal region Cnd1 PF12717.2 gi|219851355|ref|YP_002465787.1| - 0.0016 18.3 0.0 4.1 7.2 0.0 3.6 3 1 1 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.3 gi|219851355|ref|YP_002465787.1| - 0.0059 16.4 0.0 1.3 8.7 0.0 2.8 1 1 3 4 4 4 2 Aconitate B N-terminal domain DUF2019 PF09450.5 gi|219851355|ref|YP_002465787.1| - 0.081 12.7 0.2 19 5.1 0.0 2.7 1 1 1 3 3 3 0 Domain of unknown function (DUF2019) Tom5 PF10642.4 gi|219851355|ref|YP_002465787.1| - 0.16 11.6 0.1 0.29 10.8 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial import receptor subunit or translocase UPF0058 PF01893.11 gi|219851356|ref|YP_002465788.1| - 9.8e-26 89.6 0.6 1.1e-25 89.4 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.1 gi|219851357|ref|YP_002465789.1| - 1.3e-10 41.0 0.7 3.2e-10 39.8 0.2 1.9 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|219851357|ref|YP_002465789.1| - 0.00089 19.1 0.7 0.0075 16.2 0.5 2.7 1 1 0 1 1 1 1 Toprim domain DUF4366 PF14283.1 gi|219851358|ref|YP_002465790.1| - 0.23 10.8 14.8 6.5 6.1 10.2 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) DUF1049 PF06305.6 gi|219851358|ref|YP_002465790.1| - 4.4 6.8 5.6 1.3 8.5 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) FlgD_ig PF13860.1 gi|219851360|ref|YP_002465792.1| - 0.012 15.3 1.7 1.9 8.3 0.0 2.9 2 1 0 2 2 2 0 FlgD Ig-like domain DUF4366 PF14283.1 gi|219851360|ref|YP_002465792.1| - 0.06 12.7 0.3 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) MethyltransfD12 PF02086.10 gi|219851361|ref|YP_002465793.1| - 3.4e-58 197.1 0.0 3.9e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Fer4_13 PF13370.1 gi|219851362|ref|YP_002465794.1| - 1.2e-21 76.8 3.7 1.4e-21 76.6 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|219851362|ref|YP_002465794.1| - 9.2e-20 70.9 4.1 1e-19 70.8 2.9 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|219851362|ref|YP_002465794.1| - 4.8e-05 22.7 5.8 0.00045 19.6 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219851362|ref|YP_002465794.1| - 0.00026 21.1 3.6 0.00057 20.1 2.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851362|ref|YP_002465794.1| - 0.0044 16.7 6.5 0.0075 16.0 4.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|219851362|ref|YP_002465794.1| - 0.0046 16.7 3.8 0.012 15.4 2.6 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|219851362|ref|YP_002465794.1| - 0.0077 16.0 2.0 0.0077 16.0 1.4 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851362|ref|YP_002465794.1| - 0.0087 15.8 1.6 0.0087 15.8 1.1 2.1 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219851362|ref|YP_002465794.1| - 0.023 14.5 3.6 0.023 14.5 2.5 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851362|ref|YP_002465794.1| - 0.025 14.9 4.0 0.025 14.9 2.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219851362|ref|YP_002465794.1| - 0.27 11.3 7.8 0.74 9.8 5.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851362|ref|YP_002465794.1| - 0.31 11.3 5.3 0.79 10.1 3.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851362|ref|YP_002465794.1| - 0.33 11.7 7.1 2.6 8.8 4.9 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|219851362|ref|YP_002465794.1| - 0.78 10.2 7.1 0.17 12.3 0.9 2.3 3 0 0 3 3 2 0 4Fe-4S binding domain Na_H_Exchanger PF00999.16 gi|219851363|ref|YP_002465795.1| - 5.5e-73 245.6 51.6 6.8e-73 245.3 35.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Lactate_perm PF02652.9 gi|219851365|ref|YP_002465797.1| - 9.6e-50 169.5 48.7 4.9e-49 167.2 33.7 1.8 1 1 0 1 1 1 1 L-lactate permease DUF2636 PF11120.3 gi|219851366|ref|YP_002465798.1| - 0.72 9.4 8.8 3.8 7.0 0.1 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2636) ABC_tran PF00005.22 gi|219851367|ref|YP_002465799.1| - 4.4e-23 82.1 0.0 5.8e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851367|ref|YP_002465799.1| - 4.2e-13 49.9 0.0 9.7e-08 32.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219851367|ref|YP_002465799.1| - 4.2e-06 26.0 0.2 0.00037 19.6 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|219851367|ref|YP_002465799.1| - 0.0033 16.9 0.1 0.0054 16.2 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|219851367|ref|YP_002465799.1| - 0.0035 16.7 0.0 0.0052 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|219851367|ref|YP_002465799.1| - 0.0063 16.8 0.2 0.011 16.1 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|219851367|ref|YP_002465799.1| - 0.0085 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|219851367|ref|YP_002465799.1| - 0.01 14.4 0.2 0.017 13.7 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.1 gi|219851367|ref|YP_002465799.1| - 0.012 15.0 0.2 0.023 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|219851367|ref|YP_002465799.1| - 0.036 13.6 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RecA PF00154.16 gi|219851367|ref|YP_002465799.1| - 0.051 12.6 0.0 0.069 12.2 0.0 1.1 1 0 0 1 1 1 0 recA bacterial DNA recombination protein MobB PF03205.9 gi|219851367|ref|YP_002465799.1| - 0.056 13.1 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|219851367|ref|YP_002465799.1| - 0.081 13.7 0.0 0.17 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|219851367|ref|YP_002465799.1| - 0.082 13.1 0.1 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|219851367|ref|YP_002465799.1| - 0.087 11.5 0.3 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|219851367|ref|YP_002465799.1| - 0.16 11.5 0.1 0.24 10.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|219851367|ref|YP_002465799.1| - 0.3 9.4 1.1 3.4 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain Flavodoxin_4 PF12682.2 gi|219851369|ref|YP_002465801.1| - 1.5e-12 47.1 0.0 2.8e-12 46.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|219851369|ref|YP_002465801.1| - 3.5e-07 29.7 0.0 0.0041 16.5 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|219851369|ref|YP_002465801.1| - 4.4e-07 29.9 0.0 0.0029 17.6 0.0 2.1 2 0 0 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|219851369|ref|YP_002465801.1| - 0.00018 21.0 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Fer4 PF00037.22 gi|219851370|ref|YP_002465802.1| - 8e-12 44.2 10.1 4e-08 32.5 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851370|ref|YP_002465802.1| - 2e-09 37.6 22.3 6.1e-06 26.5 5.4 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851370|ref|YP_002465802.1| - 5.2e-08 32.4 9.7 5.9e-07 29.0 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851370|ref|YP_002465802.1| - 2e-07 30.7 5.2 2.1e-07 30.6 2.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851370|ref|YP_002465802.1| - 2.5e-07 30.8 4.8 2.7e-07 30.7 2.4 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219851370|ref|YP_002465802.1| - 8.5e-07 28.7 4.2 2.3e-06 27.3 2.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851370|ref|YP_002465802.1| - 1.1e-05 26.0 4.5 0.026 15.2 0.7 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|219851370|ref|YP_002465802.1| - 6.8e-05 22.5 3.9 6.8e-05 22.5 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219851370|ref|YP_002465802.1| - 0.00042 20.6 1.7 0.033 14.5 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219851370|ref|YP_002465802.1| - 0.0007 20.1 8.6 0.017 15.6 5.9 2.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219851370|ref|YP_002465802.1| - 0.011 15.7 5.9 0.055 13.4 4.1 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851370|ref|YP_002465802.1| - 0.77 10.2 7.2 0.7 10.3 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|219851370|ref|YP_002465802.1| - 1.4 8.7 8.6 3.5 7.5 0.6 3.5 3 1 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.2 gi|219851370|ref|YP_002465802.1| - 1.5 9.3 12.3 0.11 12.9 2.1 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain GAF_2 PF13185.1 gi|219851372|ref|YP_002465804.1| - 5.1e-22 78.9 0.0 1e-21 77.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|219851372|ref|YP_002465804.1| - 6.2e-22 77.4 0.1 1.4e-21 76.3 0.1 1.6 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.19 gi|219851372|ref|YP_002465804.1| - 1.5e-18 66.8 0.0 3.9e-18 65.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219851372|ref|YP_002465804.1| - 5.5e-15 55.0 0.3 1.5e-14 53.6 0.2 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219851372|ref|YP_002465804.1| - 1.8e-09 37.8 0.1 4.1e-08 33.5 0.0 3.0 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.1 gi|219851372|ref|YP_002465804.1| - 3.4e-05 23.5 0.0 0.0029 17.2 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|219851372|ref|YP_002465804.1| - 0.0005 20.1 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|219851372|ref|YP_002465804.1| - 0.012 15.6 0.0 0.033 14.2 0.0 1.8 1 0 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.1 gi|219851372|ref|YP_002465804.1| - 0.021 14.5 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|219851372|ref|YP_002465804.1| - 0.023 14.2 0.0 0.058 12.9 0.0 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS PF00989.19 gi|219851372|ref|YP_002465804.1| - 0.053 13.3 0.1 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 PAS fold DUF1294 PF06961.8 gi|219851373|ref|YP_002465805.1| - 8.6e-22 76.8 0.1 1.4e-21 76.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF202 PF02656.10 gi|219851373|ref|YP_002465805.1| - 0.048 13.8 1.9 4.9 7.4 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2104 PF09877.4 gi|219851373|ref|YP_002465805.1| - 0.059 13.3 0.1 0.094 12.6 0.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2104) DUF1385 PF07136.6 gi|219851373|ref|YP_002465805.1| - 0.069 12.2 0.3 0.089 11.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) Methyltransf_18 PF12847.2 gi|219851374|ref|YP_002465806.1| - 1.6e-17 64.0 0.0 6.6e-17 62.1 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851374|ref|YP_002465806.1| - 3e-15 56.4 0.1 1.2e-14 54.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851374|ref|YP_002465806.1| - 4.5e-15 55.5 0.0 7.7e-15 54.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851374|ref|YP_002465806.1| - 8.7e-13 48.5 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851374|ref|YP_002465806.1| - 1.2e-10 41.6 0.0 1.9e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851374|ref|YP_002465806.1| - 2.3e-10 39.9 0.0 2.7e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|219851374|ref|YP_002465806.1| - 3.4e-10 39.8 0.0 4.4e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219851374|ref|YP_002465806.1| - 8.9e-08 31.6 0.0 2.4e-07 30.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|219851374|ref|YP_002465806.1| - 9.7e-08 32.0 0.1 2.5e-07 30.7 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|219851374|ref|YP_002465806.1| - 2.1e-07 30.4 0.0 2.9e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_PK PF05891.7 gi|219851374|ref|YP_002465806.1| - 1.8e-05 24.1 0.0 2.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase RrnaAD PF00398.15 gi|219851374|ref|YP_002465806.1| - 0.00017 20.6 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|219851374|ref|YP_002465806.1| - 0.00079 18.8 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|219851374|ref|YP_002465806.1| - 0.0021 17.2 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.4 gi|219851374|ref|YP_002465806.1| - 0.012 15.1 0.0 0.027 13.9 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase GCD14 PF08704.5 gi|219851374|ref|YP_002465806.1| - 0.042 13.3 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit GidB PF02527.10 gi|219851374|ref|YP_002465806.1| - 0.051 12.7 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Fer4_5 PF12801.2 gi|219851375|ref|YP_002465807.1| - 2.5e-12 46.3 8.1 1.7e-10 40.5 0.2 5.4 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219851375|ref|YP_002465807.1| - 3.4e-07 30.2 18.2 4e-05 23.5 1.5 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851375|ref|YP_002465807.1| - 2.7e-06 27.5 26.9 2.7e-05 24.3 10.1 4.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851375|ref|YP_002465807.1| - 2.5e-05 24.5 19.9 0.0016 18.7 10.4 4.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851375|ref|YP_002465807.1| - 8e-05 22.3 14.8 8e-05 22.3 10.3 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851375|ref|YP_002465807.1| - 0.00015 21.2 30.4 0.018 14.6 2.4 5.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219851375|ref|YP_002465807.1| - 0.00068 19.3 13.4 0.0038 17.0 1.5 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|219851375|ref|YP_002465807.1| - 0.026 15.0 4.6 0.026 15.0 3.2 5.1 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851375|ref|YP_002465807.1| - 0.028 14.2 24.7 0.056 13.3 9.9 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851375|ref|YP_002465807.1| - 0.035 14.4 4.3 0.035 14.4 3.0 4.3 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219851375|ref|YP_002465807.1| - 0.24 11.4 26.1 0.034 14.0 3.5 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851375|ref|YP_002465807.1| - 0.26 12.0 27.3 0.3 11.8 3.5 4.7 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|219851375|ref|YP_002465807.1| - 0.4 11.0 24.3 0.36 11.2 4.1 4.1 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851375|ref|YP_002465807.1| - 2.2 8.7 29.6 0.046 14.1 2.5 4.2 4 1 1 5 5 4 0 4Fe-4S dicluster domain Cation_efflux PF01545.16 gi|219851376|ref|YP_002465808.1| - 4.6e-50 170.3 1.6 5.4e-50 170.0 1.1 1.0 1 0 0 1 1 1 1 Cation efflux family DUF1212 PF06738.7 gi|219851376|ref|YP_002465808.1| - 5.5 6.3 8.7 0.93 8.9 1.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) DUF1469 PF07332.6 gi|219851376|ref|YP_002465808.1| - 9.7 5.9 11.5 1 9.1 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) HxlR PF01638.12 gi|219851377|ref|YP_002465809.1| - 6.8e-19 67.2 0.2 1.3e-18 66.4 0.1 1.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Lipoprotein_9 PF03180.9 gi|219851377|ref|YP_002465809.1| - 0.076 11.8 0.0 0.093 11.6 0.0 1.1 1 0 0 1 1 1 0 NLPA lipoprotein Fer4_16 PF13484.1 gi|219851378|ref|YP_002465810.1| - 0.00078 20.1 5.6 0.0023 18.6 3.9 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|219851378|ref|YP_002465810.1| - 0.00091 18.7 0.8 0.00091 18.7 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851378|ref|YP_002465810.1| - 1.9 8.9 9.3 0.6 10.5 0.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851378|ref|YP_002465810.1| - 6.5 6.6 8.6 23 4.8 5.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF2115 PF09888.4 gi|219851379|ref|YP_002465811.1| - 1.1e-13 51.6 0.0 1.3e-13 51.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF4066 PF13278.1 gi|219851380|ref|YP_002465812.1| - 1e-34 119.2 0.0 1.2e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|219851380|ref|YP_002465812.1| - 2.6e-14 52.9 0.0 3.4e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Lactamase_B_2 PF12706.2 gi|219851381|ref|YP_002465813.1| - 3e-22 79.1 0.1 4.2e-22 78.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|219851381|ref|YP_002465813.1| - 1.5e-17 63.8 0.1 1.9e-17 63.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|219851381|ref|YP_002465813.1| - 2e-06 27.5 0.4 0.0013 18.4 0.1 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DUF362 PF04015.7 gi|219851381|ref|YP_002465813.1| - 0.064 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) TetR_N PF00440.18 gi|219851382|ref|YP_002465814.1| - 3e-17 61.9 0.0 7.2e-17 60.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family LacI PF00356.16 gi|219851382|ref|YP_002465814.1| - 0.0023 17.5 0.1 0.01 15.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_Tnp_1_2 PF13022.1 gi|219851382|ref|YP_002465814.1| - 0.0075 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase DUF2754 PF10953.3 gi|219851382|ref|YP_002465814.1| - 0.038 14.0 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) HTH_7 PF02796.10 gi|219851382|ref|YP_002465814.1| - 0.061 13.1 0.4 0.64 9.9 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase MFS_1 PF07690.11 gi|219851383|ref|YP_002465815.1| - 2e-48 164.9 52.3 2e-48 164.9 36.3 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219851383|ref|YP_002465815.1| - 1.9e-13 49.8 18.2 1.9e-13 49.8 12.6 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|219851383|ref|YP_002465815.1| - 0.13 12.0 18.8 0.36 10.6 0.5 4.6 4 0 0 4 4 4 0 MFS_1 like family NTPase_1 PF03266.10 gi|219851384|ref|YP_002465816.1| - 2.4e-27 95.7 0.0 2.8e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|219851384|ref|YP_002465816.1| - 0.00029 20.4 0.0 0.0021 17.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|219851384|ref|YP_002465816.1| - 0.00062 19.4 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF2478 PF10649.4 gi|219851384|ref|YP_002465816.1| - 0.0022 17.3 0.0 0.0062 15.8 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_22 PF13401.1 gi|219851384|ref|YP_002465816.1| - 0.0027 17.8 0.0 0.0088 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|219851384|ref|YP_002465816.1| - 0.0056 16.3 0.0 0.014 15.0 0.0 1.8 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|219851384|ref|YP_002465816.1| - 0.0069 16.3 0.1 0.014 15.3 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|219851384|ref|YP_002465816.1| - 0.033 13.6 0.0 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GvpD PF07088.6 gi|219851384|ref|YP_002465816.1| - 0.052 11.8 0.0 0.08 11.2 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_11 PF13086.1 gi|219851384|ref|YP_002465816.1| - 0.11 12.1 0.0 0.31 10.5 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|219851384|ref|YP_002465816.1| - 0.11 12.8 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|219851385|ref|YP_002465817.1| - 9.2e-31 106.9 0.0 1.4e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851385|ref|YP_002465817.1| - 2.3e-11 44.1 0.0 6.9e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|219851385|ref|YP_002465817.1| - 5e-05 23.5 0.0 0.0001 22.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.1 gi|219851385|ref|YP_002465817.1| - 0.00031 20.8 0.3 0.00066 19.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|219851385|ref|YP_002465817.1| - 0.00045 20.3 0.1 0.0024 18.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|219851385|ref|YP_002465817.1| - 0.0099 15.4 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|219851385|ref|YP_002465817.1| - 0.01 16.0 0.0 0.02 15.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|219851385|ref|YP_002465817.1| - 0.016 15.4 0.2 0.083 13.1 0.1 1.9 1 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|219851385|ref|YP_002465817.1| - 0.022 14.4 0.1 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|219851385|ref|YP_002465817.1| - 0.027 13.8 1.0 0.25 10.7 0.3 2.5 2 1 0 2 2 2 0 AAA domain PRK PF00485.13 gi|219851385|ref|YP_002465817.1| - 0.027 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.1 gi|219851385|ref|YP_002465817.1| - 0.051 13.1 0.1 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|219851385|ref|YP_002465817.1| - 0.051 13.2 0.3 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain DUF258 PF03193.11 gi|219851385|ref|YP_002465817.1| - 0.08 12.1 0.1 0.17 11.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|219851385|ref|YP_002465817.1| - 0.14 11.2 0.4 1.9 7.5 0.1 2.1 2 0 0 2 2 2 0 KaiC MobB PF03205.9 gi|219851385|ref|YP_002465817.1| - 0.16 11.7 0.1 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|219851385|ref|YP_002465817.1| - 0.17 10.7 0.1 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|219851386|ref|YP_002465818.1| - 1.1e-24 87.3 0.0 1.4e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|219851386|ref|YP_002465818.1| - 4.1e-16 59.0 0.6 8e-16 58.1 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|219851386|ref|YP_002465818.1| - 3.9e-10 40.1 0.0 4.1e-08 33.5 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|219851386|ref|YP_002465818.1| - 0.004 16.6 0.1 0.0078 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|219851386|ref|YP_002465818.1| - 0.0046 16.1 0.0 0.029 13.5 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|219851386|ref|YP_002465818.1| - 0.023 13.9 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.12 gi|219851386|ref|YP_002465818.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|219851387|ref|YP_002465819.1| - 2.7e-18 66.1 13.5 2.7e-18 66.1 9.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|219851388|ref|YP_002465820.1| - 5.6e-41 140.0 13.3 5.6e-41 140.0 9.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TadE PF07811.7 gi|219851388|ref|YP_002465820.1| - 4.4 7.2 6.6 0.68 9.8 0.1 2.8 2 0 0 2 2 2 0 TadE-like protein SBP_bac_5 PF00496.17 gi|219851389|ref|YP_002465821.1| - 1.7e-60 204.8 1.2 2.3e-60 204.4 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle EF-hand_5 PF13202.1 gi|219851389|ref|YP_002465821.1| - 0.0071 15.6 0.0 0.017 14.4 0.0 1.7 1 0 0 1 1 1 1 EF hand EF-hand_1 PF00036.27 gi|219851389|ref|YP_002465821.1| - 0.05 12.9 0.2 0.15 11.4 0.1 1.8 1 0 0 1 1 1 0 EF hand DUF4430 PF14478.1 gi|219851390|ref|YP_002465822.1| - 0.0045 17.0 0.8 0.013 15.5 0.6 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) EF-hand_1 PF00036.27 gi|219851391|ref|YP_002465823.1| - 8.5e-06 24.7 5.4 0.0072 15.5 0.0 3.4 3 0 0 3 3 3 2 EF hand EF-hand_6 PF13405.1 gi|219851391|ref|YP_002465823.1| - 0.00032 20.3 0.6 0.09 12.7 0.0 2.7 2 0 0 2 2 2 2 EF-hand domain EF-hand_7 PF13499.1 gi|219851391|ref|YP_002465823.1| - 0.33 11.1 3.3 9.9 6.3 0.5 2.5 2 0 0 2 2 2 0 EF-hand domain pair FG-GAP PF01839.18 gi|219851391|ref|YP_002465823.1| - 0.67 9.7 7.0 5 6.9 0.2 3.3 3 0 0 3 3 3 0 FG-GAP repeat EF-hand_1 PF00036.27 gi|219851392|ref|YP_002465824.1| - 0.00012 21.0 6.8 0.031 13.5 0.1 3.2 3 0 0 3 3 3 2 EF hand EF-hand_6 PF13405.1 gi|219851392|ref|YP_002465824.1| - 0.0003 20.3 0.7 0.069 13.0 0.0 2.7 2 0 0 2 2 2 2 EF-hand domain FG-GAP PF01839.18 gi|219851392|ref|YP_002465824.1| - 0.094 12.4 4.8 4.9 6.9 0.2 3.5 3 0 0 3 3 3 0 FG-GAP repeat EF-hand_7 PF13499.1 gi|219851392|ref|YP_002465824.1| - 0.74 10.0 4.2 9.7 6.4 0.5 2.5 2 0 0 2 2 2 0 EF-hand domain pair IncA PF04156.9 gi|219851393|ref|YP_002465825.1| - 0.001 18.7 1.1 0.001 18.7 0.8 1.5 2 0 0 2 2 2 1 IncA protein DUF2207 PF09972.4 gi|219851393|ref|YP_002465825.1| - 0.011 14.3 0.0 0.018 13.6 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3353 PF11833.3 gi|219851393|ref|YP_002465825.1| - 0.057 12.8 0.2 0.057 12.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) LEH PF07858.7 gi|219851393|ref|YP_002465825.1| - 0.097 12.6 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain FAM176 PF14851.1 gi|219851393|ref|YP_002465825.1| - 0.69 9.5 2.4 6.5 6.4 0.1 2.6 2 0 0 2 2 2 0 FAM176 family DUF4131 PF13567.1 gi|219851393|ref|YP_002465825.1| - 4.9 6.5 10.0 0.18 11.2 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Oxidored_molyb PF00174.14 gi|219851394|ref|YP_002465826.1| - 9.9e-08 31.5 0.0 5.2e-07 29.2 0.0 2.1 3 0 0 3 3 3 1 Oxidoreductase molybdopterin binding domain DUF4430 PF14478.1 gi|219851394|ref|YP_002465826.1| - 2.7e-07 30.5 10.1 0.0015 18.5 1.3 3.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4430) PKD PF00801.15 gi|219851394|ref|YP_002465826.1| - 3.7e-07 29.7 1.8 3.7e-07 29.7 1.2 5.4 5 2 0 5 5 5 1 PKD domain AP_endonuc_2 PF01261.19 gi|219851395|ref|YP_002465827.1| - 2e-20 72.9 0.1 3e-20 72.4 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TatD_DNase PF01026.16 gi|219851395|ref|YP_002465827.1| - 0.016 14.3 0.0 0.05 12.8 0.0 1.8 1 1 0 1 1 1 0 TatD related DNase GATase_3 PF07685.9 gi|219851396|ref|YP_002465828.1| - 1.3e-28 99.5 0.1 2.1e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|219851396|ref|YP_002465828.1| - 3.5e-23 82.0 0.0 6.1e-23 81.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|219851396|ref|YP_002465828.1| - 5.4e-17 62.0 1.5 4e-14 52.7 1.0 2.2 1 1 0 1 1 1 1 AAA domain PALP PF00291.20 gi|219851396|ref|YP_002465828.1| - 0.026 13.7 1.5 0.53 9.4 0.4 2.5 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme PRK PF00485.13 gi|219851396|ref|YP_002465828.1| - 0.12 11.9 0.9 3.5 7.1 0.2 2.2 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family F420_ligase PF01996.11 gi|219851397|ref|YP_002465829.1| - 5.4e-65 218.6 0.5 6.3e-65 218.4 0.3 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Pterin_bind PF00809.17 gi|219851398|ref|YP_002465830.1| - 1.3e-40 139.0 0.0 1.6e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.14 gi|219851399|ref|YP_002465831.1| - 1.1e-70 235.8 1.1 1.5e-70 235.4 0.8 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|219851399|ref|YP_002465831.1| - 3e-35 120.7 0.1 4.6e-35 120.1 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|219851400|ref|YP_002465832.1| - 3.8e-167 555.6 0.2 4.6e-167 555.4 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|219851400|ref|YP_002465832.1| - 0.0018 17.3 0.0 0.0033 16.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II ETF PF01012.16 gi|219851400|ref|YP_002465832.1| - 0.081 12.6 0.2 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Electron transfer flavoprotein domain SlyX PF04102.7 gi|219851401|ref|YP_002465833.1| - 0.41 11.0 2.9 3.9 7.9 0.1 2.4 2 0 0 2 2 2 0 SlyX V_ATPase_I PF01496.14 gi|219851401|ref|YP_002465833.1| - 0.47 8.2 1.5 0.53 8.0 1.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SMC_N PF02463.14 gi|219851402|ref|YP_002465834.1| - 2.5e-63 213.2 0.0 5.6e-63 212.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|219851402|ref|YP_002465834.1| - 2e-27 95.5 0.0 8.4e-27 93.5 0.0 2.2 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|219851402|ref|YP_002465834.1| - 2.6e-18 67.0 5.4 2.6e-18 67.0 3.7 5.1 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.1 gi|219851402|ref|YP_002465834.1| - 3.4e-13 50.2 5.7 5e-06 26.6 0.4 2.9 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|219851402|ref|YP_002465834.1| - 6.8e-10 38.5 3.2 2.1e-07 30.3 0.1 2.9 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|219851402|ref|YP_002465834.1| - 7e-08 31.8 0.0 1.6e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|219851402|ref|YP_002465834.1| - 0.00013 20.6 6.3 0.00013 20.6 4.3 5.4 3 2 1 5 5 4 2 AAA domain Reo_sigmaC PF04582.7 gi|219851402|ref|YP_002465834.1| - 0.0029 16.8 11.5 0.024 13.7 0.4 4.3 2 1 2 4 4 4 2 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|219851402|ref|YP_002465834.1| - 0.0042 16.9 8.7 0.0042 16.9 6.0 7.1 2 2 3 6 6 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran PF00005.22 gi|219851402|ref|YP_002465834.1| - 0.014 15.6 0.0 0.014 15.6 0.0 5.0 3 2 0 3 3 3 0 ABC transporter NPV_P10 PF05531.7 gi|219851402|ref|YP_002465834.1| - 0.016 15.4 7.0 0.81 9.9 0.0 5.0 4 1 1 5 5 4 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|219851402|ref|YP_002465834.1| - 0.39 10.5 17.6 0.06 13.1 1.3 4.6 4 1 0 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus T2SF PF00482.18 gi|219851402|ref|YP_002465834.1| - 1.3 8.9 9.9 8.1 6.3 0.1 3.7 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F DUF1664 PF07889.7 gi|219851402|ref|YP_002465834.1| - 2.2 8.0 23.0 0.13 12.0 1.0 5.7 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) ScpA_ScpB PF02616.9 gi|219851403|ref|YP_002465835.1| - 3.3e-23 82.5 0.5 3.2e-22 79.3 0.3 2.0 1 1 0 1 1 1 1 ScpA/B protein Arteri_Gl PF00951.13 gi|219851404|ref|YP_002465836.1| - 0.064 12.8 0.4 0.093 12.3 0.1 1.4 1 1 0 1 1 1 0 Arterivirus GL envelope glycoprotein HupE_UreJ_2 PF13795.1 gi|219851404|ref|YP_002465836.1| - 0.17 11.3 7.1 0.35 10.3 0.9 2.1 1 1 1 2 2 2 0 HupE / UreJ protein DUF2371 PF10177.4 gi|219851404|ref|YP_002465836.1| - 0.86 9.4 3.4 0.5 10.2 1.4 1.4 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) LEA_2 PF03168.8 gi|219851405|ref|YP_002465837.1| - 1.1e-07 32.1 0.0 1.5e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein DUF3712 PF12505.3 gi|219851405|ref|YP_002465837.1| - 1e-06 28.7 2.8 0.004 17.1 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3712) DUF1356 PF07092.7 gi|219851405|ref|YP_002465837.1| - 0.0076 15.4 1.7 0.0095 15.1 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1356) Pga1 PF10333.4 gi|219851405|ref|YP_002465837.1| - 0.016 14.8 0.3 0.025 14.2 0.2 1.3 1 0 0 1 1 1 0 GPI-Mannosyltransferase II co-activator Vac7 PF12751.2 gi|219851405|ref|YP_002465837.1| - 0.11 11.3 1.6 0.15 10.8 1.1 1.1 1 0 0 1 1 1 0 Vacuolar segregation subunit 7 DUF373 PF04123.8 gi|219851406|ref|YP_002465838.1| - 0.057 12.4 17.3 0.18 10.8 12.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF373) RhodobacterPufX PF11511.3 gi|219851406|ref|YP_002465838.1| - 3.3 7.1 5.4 31 4.0 0.0 3.5 3 0 0 3 3 3 0 Intrinsic membrane protein PufX PAP2 PF01569.16 gi|219851407|ref|YP_002465839.1| - 2.9e-05 23.7 11.4 2.9e-05 23.7 7.9 3.0 2 2 0 2 2 2 1 PAP2 superfamily NHL PF01436.16 gi|219851408|ref|YP_002465840.1| - 1.6e-54 179.1 3.4 1.3e-11 43.8 0.4 6.6 6 0 0 6 6 6 6 NHL repeat SGL PF08450.7 gi|219851408|ref|YP_002465840.1| - 2.5e-22 79.4 6.0 9.6e-08 31.7 0.2 5.4 1 1 3 4 4 4 4 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219851408|ref|YP_002465840.1| - 7.9e-20 70.3 19.5 0.00039 20.1 0.0 7.0 6 0 0 6 6 6 6 Beta-propeller repeat CBM_6 PF03422.10 gi|219851408|ref|YP_002465840.1| - 3.2e-18 66.0 0.2 3.2e-18 66.0 0.1 3.4 3 1 1 4 4 4 1 Carbohydrate binding module (family 6) Ldl_recept_b PF00058.12 gi|219851408|ref|YP_002465840.1| - 8.9e-06 25.9 0.0 6 7.2 0.0 5.5 5 0 0 5 5 5 1 Low-density lipoprotein receptor repeat class B DUF4397 PF14344.1 gi|219851408|ref|YP_002465840.1| - 3.5e-05 24.1 3.6 0.0022 18.3 0.0 3.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4397) SdiA-regulated PF06977.6 gi|219851408|ref|YP_002465840.1| - 5.4e-05 22.2 1.4 11 4.9 0.0 5.1 4 1 1 5 5 5 1 SdiA-regulated Reg_prop PF07494.6 gi|219851408|ref|YP_002465840.1| - 0.0033 17.2 0.7 1.1e+02 3.3 0.0 5.5 6 0 0 6 6 6 0 Two component regulator propeller Poly_export PF02563.11 gi|219851408|ref|YP_002465840.1| - 1.6 8.5 6.3 5.9 6.7 0.0 4.0 5 0 0 5 5 5 0 Polysaccharide biosynthesis/export protein NPCBM_assoc PF10633.4 gi|219851409|ref|YP_002465841.1| - 1.6e-22 79.3 4.9 1.7e-16 60.0 0.6 4.8 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|219851409|ref|YP_002465841.1| - 3.1e-12 46.3 8.9 8.1e-12 45.0 0.3 3.8 4 1 1 5 5 5 1 Carboxypeptidase regulatory-like domain CARDB PF07705.6 gi|219851409|ref|YP_002465841.1| - 1.6e-07 31.3 9.9 0.0023 17.9 0.6 4.5 3 1 2 5 5 5 2 CARDB DUF4480 PF13715.1 gi|219851409|ref|YP_002465841.1| - 2.5e-06 27.4 2.9 1.7e-05 24.7 0.4 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Transglut_N PF00868.15 gi|219851409|ref|YP_002465841.1| - 4.4e-05 23.4 0.0 0.61 10.1 0.0 3.5 3 0 0 3 3 3 2 Transglutaminase family Alpha_adaptinC2 PF02883.15 gi|219851409|ref|YP_002465841.1| - 0.0007 19.8 0.0 0.018 15.3 0.0 2.6 2 0 0 2 2 2 1 Adaptin C-terminal domain PEGA PF08308.6 gi|219851409|ref|YP_002465841.1| - 0.0022 17.7 3.6 0.017 14.9 0.0 3.5 4 0 0 4 4 4 1 PEGA domain phage_tail_N PF08400.5 gi|219851409|ref|YP_002465841.1| - 0.0056 16.3 7.2 0.44 10.2 0.2 3.6 2 2 1 3 3 3 1 Prophage tail fibre N-terminal DUF11 PF01345.13 gi|219851409|ref|YP_002465841.1| - 0.017 15.1 1.5 0.12 12.4 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function DUF11 Y_Y_Y PF07495.8 gi|219851409|ref|YP_002465841.1| - 0.02 14.6 1.5 23 4.8 0.1 4.3 5 0 0 5 5 5 0 Y_Y_Y domain DUF2648 PF10855.3 gi|219851409|ref|YP_002465841.1| - 0.086 12.2 0.2 0.24 10.8 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2648) DUF1533 PF07550.6 gi|219851409|ref|YP_002465841.1| - 0.24 11.4 2.5 13 5.8 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) ABC2_membrane_2 PF12679.2 gi|219851410|ref|YP_002465842.1| - 7.4e-53 179.1 12.8 8.6e-53 178.9 8.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219851410|ref|YP_002465842.1| - 4.3e-18 65.3 11.0 4.3e-18 65.3 7.6 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|219851410|ref|YP_002465842.1| - 3.4e-09 36.2 9.0 3.4e-09 36.2 6.3 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|219851410|ref|YP_002465842.1| - 2.7e-06 26.6 25.9 2.7e-06 26.6 18.0 3.0 1 1 1 2 2 2 1 ABC-2 family transporter protein LysE PF01810.13 gi|219851410|ref|YP_002465842.1| - 0.11 11.7 8.6 0.018 14.3 2.4 2.2 2 0 0 2 2 2 0 LysE type translocator DUF4293 PF14126.1 gi|219851410|ref|YP_002465842.1| - 0.24 11.3 10.1 0.058 13.3 2.4 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4293) DUF2973 PF11189.3 gi|219851410|ref|YP_002465842.1| - 3.4 7.4 0.0 3.4 7.4 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2973) ABC_tran PF00005.22 gi|219851411|ref|YP_002465843.1| - 8.9e-28 97.2 0.0 1.5e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851411|ref|YP_002465843.1| - 1.2e-11 45.1 0.0 3.2e-07 30.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219851411|ref|YP_002465843.1| - 0.00027 20.0 0.0 0.00087 18.4 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|219851411|ref|YP_002465843.1| - 0.0022 17.2 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|219851411|ref|YP_002465843.1| - 0.0081 16.5 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219851411|ref|YP_002465843.1| - 0.0091 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|219851411|ref|YP_002465843.1| - 0.021 14.2 0.0 2.4 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|219851411|ref|YP_002465843.1| - 0.054 13.3 0.1 0.69 9.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain HTH_20 PF12840.2 gi|219851413|ref|YP_002465845.1| - 3e-17 62.1 0.1 4.6e-09 35.9 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|219851413|ref|YP_002465845.1| - 2.4e-15 55.6 0.0 7.5e-12 44.4 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|219851413|ref|YP_002465845.1| - 5.2e-10 38.8 0.0 2.1e-06 27.2 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|219851413|ref|YP_002465845.1| - 8.5e-06 25.4 0.0 2.6e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|219851413|ref|YP_002465845.1| - 0.00015 21.3 0.0 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 MarR family Crp PF00325.15 gi|219851413|ref|YP_002465845.1| - 0.00021 20.6 0.0 0.00047 19.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_AsnC-type PF13404.1 gi|219851413|ref|YP_002465845.1| - 0.00047 19.6 0.0 0.00087 18.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|219851413|ref|YP_002465845.1| - 0.00096 19.1 0.0 0.035 14.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|219851413|ref|YP_002465845.1| - 0.0011 18.6 0.0 0.0029 17.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|219851413|ref|YP_002465845.1| - 0.0014 18.3 0.0 0.0087 15.7 0.0 2.1 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|219851413|ref|YP_002465845.1| - 0.0016 18.3 0.0 0.0039 17.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|219851413|ref|YP_002465845.1| - 0.0036 16.9 0.0 0.0082 15.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_IS630 PF01710.11 gi|219851413|ref|YP_002465845.1| - 0.0081 15.8 0.0 0.45 10.1 0.0 2.2 1 1 0 2 2 2 1 Transposase HTH_10 PF04967.7 gi|219851413|ref|YP_002465845.1| - 0.018 14.5 0.0 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 HTH DNA binding domain RepL PF05732.6 gi|219851413|ref|YP_002465845.1| - 0.022 13.9 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) GntR PF00392.16 gi|219851413|ref|YP_002465845.1| - 0.027 13.8 0.1 0.45 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.11 gi|219851413|ref|YP_002465845.1| - 0.042 13.9 0.0 0.16 12.0 0.0 1.9 1 1 1 2 2 2 0 Penicillinase repressor FaeA PF04703.7 gi|219851413|ref|YP_002465845.1| - 0.048 13.8 0.0 0.44 10.7 0.0 2.3 2 1 0 2 2 2 0 FaeA-like protein HTH_27 PF13463.1 gi|219851413|ref|YP_002465845.1| - 0.076 13.3 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|219851413|ref|YP_002465845.1| - 0.078 12.4 0.1 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit GerE PF00196.14 gi|219851413|ref|YP_002465845.1| - 0.097 12.0 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|219851413|ref|YP_002465845.1| - 0.11 12.5 0.0 0.28 11.3 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator Cache_2 PF08269.6 gi|219851415|ref|YP_002465847.1| - 3.8e-11 42.8 0.1 2.9e-07 30.3 0.0 3.5 3 0 0 3 3 3 2 Cache domain Seadorna_Vp10 PF07322.6 gi|219851415|ref|YP_002465847.1| - 0.081 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Seadornavirus Vp10 DUF308 PF03729.8 gi|219851416|ref|YP_002465848.1| - 1.9e-18 66.2 45.5 8.3e-11 41.7 12.1 3.3 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) Papilloma_E5A PF05776.7 gi|219851416|ref|YP_002465848.1| - 0.038 14.1 2.0 0.038 14.1 1.4 2.9 3 0 0 3 3 3 0 Papillomavirus E5A protein DUF4538 PF15061.1 gi|219851416|ref|YP_002465848.1| - 0.042 13.1 0.3 0.17 11.1 0.2 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) UvrD-helicase PF00580.16 gi|219851418|ref|YP_002465850.1| - 8.2e-27 94.3 8.5 1.6e-16 60.4 0.5 3.3 1 1 0 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|219851418|ref|YP_002465850.1| - 1.1e-10 41.4 0.6 0.00018 21.0 0.0 3.1 2 2 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|219851418|ref|YP_002465850.1| - 2.1e-06 27.7 0.0 9.2e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|219851418|ref|YP_002465850.1| - 5.8e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_12 PF13087.1 gi|219851418|ref|YP_002465850.1| - 9.2e-05 21.9 0.2 0.006 15.9 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.1 gi|219851418|ref|YP_002465850.1| - 0.00032 20.3 0.0 0.0026 17.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|219851418|ref|YP_002465850.1| - 0.00044 19.8 1.3 0.38 10.2 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_15 PF13175.1 gi|219851419|ref|YP_002465851.1| - 3.5e-32 111.9 25.8 1.5e-22 80.2 9.5 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.1 gi|219851419|ref|YP_002465851.1| - 9.8e-27 94.6 17.5 9.8e-27 94.6 12.1 2.6 2 2 1 3 3 3 1 AAA domain DUF2813 PF11398.3 gi|219851419|ref|YP_002465851.1| - 1.7e-17 63.5 1.6 2.3e-11 43.4 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|219851419|ref|YP_002465851.1| - 1.2e-13 50.8 5.4 6.1e-13 48.5 3.7 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|219851419|ref|YP_002465851.1| - 7.8e-13 49.2 19.1 1.5e-12 48.3 11.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|219851419|ref|YP_002465851.1| - 3.8e-06 26.3 0.0 1.1e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|219851419|ref|YP_002465851.1| - 0.00044 20.5 0.0 0.0018 18.5 0.0 2.0 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|219851419|ref|YP_002465851.1| - 0.0038 16.4 0.0 0.0078 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|219851419|ref|YP_002465851.1| - 0.11 12.4 0.1 0.35 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Methyltransf_11 PF08241.7 gi|219851420|ref|YP_002465852.1| - 8.7e-07 29.3 0.0 1.4e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851420|ref|YP_002465852.1| - 3.8e-06 27.4 0.0 5.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851420|ref|YP_002465852.1| - 0.00026 21.2 0.0 0.00039 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851420|ref|YP_002465852.1| - 0.0013 17.8 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|219851420|ref|YP_002465852.1| - 0.0024 17.4 0.0 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851420|ref|YP_002465852.1| - 0.03 14.0 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|219851420|ref|YP_002465852.1| - 0.032 13.2 0.0 0.038 13.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|219851420|ref|YP_002465852.1| - 0.036 12.7 0.0 0.14 10.8 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) MTS PF05175.9 gi|219851420|ref|YP_002465852.1| - 0.064 12.6 0.0 0.075 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Peptidase_M3 PF01432.15 gi|219851421|ref|YP_002465853.1| - 1.7e-123 413.0 0.1 2.2e-123 412.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M3 5_3_exonuc_N PF02739.11 gi|219851421|ref|YP_002465853.1| - 0.042 13.2 0.2 0.46 9.8 0.1 2.3 2 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain Nitrate_red_gam PF02665.9 gi|219851423|ref|YP_002465855.1| - 0.00012 21.4 18.4 0.00081 18.8 6.6 3.3 1 1 2 3 3 3 1 Nitrate reductase gamma subunit CCG PF02754.11 gi|219851424|ref|YP_002465856.1| - 2.3e-31 107.6 2.4 4.8e-17 61.7 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|219851424|ref|YP_002465856.1| - 3.2e-10 39.8 3.3 3.2e-10 39.8 2.3 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851424|ref|YP_002465856.1| - 5.4e-08 33.0 0.9 5.4e-08 33.0 0.6 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851424|ref|YP_002465856.1| - 1.4e-07 31.2 7.2 1.4e-07 31.1 3.3 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851424|ref|YP_002465856.1| - 6.2e-06 26.4 11.9 6.7e-05 23.1 7.9 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851424|ref|YP_002465856.1| - 3.1e-05 23.3 17.9 0.0016 17.9 2.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219851424|ref|YP_002465856.1| - 4.5e-05 23.7 12.4 0.062 13.7 0.5 4.3 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851424|ref|YP_002465856.1| - 0.00027 21.6 6.2 0.16 12.7 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219851424|ref|YP_002465856.1| - 0.00041 20.5 11.0 0.00041 20.5 7.6 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851424|ref|YP_002465856.1| - 0.0039 17.0 12.5 0.0093 15.8 2.2 3.6 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219851424|ref|YP_002465856.1| - 0.0061 16.8 2.2 0.0061 16.8 1.5 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851424|ref|YP_002465856.1| - 0.0085 15.9 12.5 0.032 14.0 0.3 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851424|ref|YP_002465856.1| - 0.084 12.7 21.6 0.076 12.9 2.4 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219851424|ref|YP_002465856.1| - 0.31 11.6 8.2 1 10.0 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219851424|ref|YP_002465856.1| - 0.84 10.0 10.2 1.6 9.1 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fe-ADH PF00465.14 gi|219851425|ref|YP_002465857.1| - 2.3e-59 200.8 0.0 2.8e-59 200.6 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|219851425|ref|YP_002465857.1| - 1.8e-28 99.5 0.0 2.3e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|219851425|ref|YP_002465857.1| - 1.5e-07 30.6 0.3 3.1e-06 26.3 0.2 2.2 1 1 0 1 1 1 1 3-dehydroquinate synthase SnoaL_3 PF13474.1 gi|219851426|ref|YP_002465858.1| - 9.2e-30 103.1 0.1 1.1e-29 102.9 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|219851426|ref|YP_002465858.1| - 7.1e-13 48.6 0.4 8.6e-13 48.4 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|219851426|ref|YP_002465858.1| - 4.8e-06 26.4 0.2 6.5e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.2 gi|219851426|ref|YP_002465858.1| - 0.00022 21.7 0.1 0.00028 21.3 0.1 1.3 1 1 0 1 1 1 1 Putative lumazine-binding SnoaL_2 PF12680.2 gi|219851426|ref|YP_002465858.1| - 0.00023 21.5 0.2 0.0003 21.1 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.3 gi|219851426|ref|YP_002465858.1| - 0.019 14.6 0.1 0.026 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) Bac_chlorC PF02043.12 gi|219851426|ref|YP_002465858.1| - 0.033 13.9 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriochlorophyll C binding protein CaMKII_AD PF08332.5 gi|219851426|ref|YP_002465858.1| - 0.061 13.2 0.1 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II Association MFS_1 PF07690.11 gi|219851429|ref|YP_002465861.1| - 7.4e-20 70.9 58.4 2.9e-15 55.8 21.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Beta-Casp PF10996.3 gi|219851430|ref|YP_002465862.1| - 6.8e-32 110.0 0.0 1.3e-31 109.1 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|219851430|ref|YP_002465862.1| - 1.2e-18 67.5 0.1 2.3e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|219851430|ref|YP_002465862.1| - 1.2e-12 47.4 0.9 2.1e-12 46.6 0.1 1.9 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|219851430|ref|YP_002465862.1| - 5e-09 35.9 0.0 9.9e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|219851430|ref|YP_002465862.1| - 3.7e-07 29.6 0.4 3.4e-06 26.5 0.1 2.6 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|219851430|ref|YP_002465862.1| - 0.00021 20.8 0.2 0.00066 19.2 0.1 1.9 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|219851430|ref|YP_002465862.1| - 0.00022 20.9 0.0 0.00053 19.7 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|219851430|ref|YP_002465862.1| - 0.019 14.5 0.1 0.053 13.1 0.0 1.7 1 0 0 1 1 1 0 KH domain DUF3489 PF11994.3 gi|219851430|ref|YP_002465862.1| - 0.038 13.9 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) KH_3 PF13014.1 gi|219851430|ref|YP_002465862.1| - 0.047 13.3 0.4 0.13 11.9 0.3 1.8 1 0 0 1 1 1 0 KH domain Proteasome PF00227.21 gi|219851431|ref|YP_002465863.1| - 3.1e-58 196.2 1.9 3.5e-58 196.0 1.3 1.0 1 0 0 1 1 1 1 Proteasome subunit CBS PF00571.23 gi|219851432|ref|YP_002465864.1| - 4.8e-48 160.6 8.5 1.8e-17 62.7 0.2 4.1 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|219851433|ref|YP_002465865.1| - 4.2e-33 114.5 0.3 4.7e-33 114.3 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Methyltransf_18 PF12847.2 gi|219851433|ref|YP_002465865.1| - 0.14 12.7 0.0 0.91 10.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain A_deaminase PF00962.17 gi|219851434|ref|YP_002465866.1| - 1.2e-13 50.7 0.0 1.8e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_1 PF01979.15 gi|219851434|ref|YP_002465866.1| - 1.1e-06 28.6 0.0 0.023 14.3 0.1 2.3 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|219851434|ref|YP_002465866.1| - 9.2e-06 25.8 3.6 2.2e-05 24.6 2.5 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|219851434|ref|YP_002465866.1| - 0.018 14.8 0.1 0.048 13.4 0.1 1.9 1 0 0 1 1 1 0 Amidohydrolase Amidohydro_3 PF07969.6 gi|219851434|ref|YP_002465866.1| - 0.051 12.7 1.3 0.12 11.5 0.0 2.0 1 1 0 2 2 2 0 Amidohydrolase family Sec61_beta PF03911.11 gi|219851435|ref|YP_002465867.1| - 8.7e-09 35.0 0.2 9.7e-09 34.8 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family DUF883 PF05957.8 gi|219851435|ref|YP_002465867.1| - 0.052 13.9 0.0 0.056 13.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) F420_ligase PF01996.11 gi|219851436|ref|YP_002465868.1| - 1.2e-62 210.9 0.0 1.4e-62 210.7 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase STT3 PF02516.9 gi|219851438|ref|YP_002465870.1| - 4.5e-23 81.9 44.9 7.4e-21 74.6 31.1 2.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Gemini_mov PF01708.11 gi|219851438|ref|YP_002465870.1| - 0.62 9.6 0.0 0.62 9.6 0.0 4.1 5 0 0 5 5 5 0 Geminivirus putative movement protein Rhodanese PF00581.15 gi|219851440|ref|YP_002465872.1| - 3.2e-21 75.7 0.0 4e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain SusD-like PF12741.2 gi|219851440|ref|YP_002465872.1| - 0.037 12.6 0.2 0.039 12.5 0.1 1.0 1 0 0 1 1 1 0 Susd and RagB outer membrane lipoprotein SoxE PF06525.6 gi|219851440|ref|YP_002465872.1| - 0.055 12.7 0.6 0.087 12.1 0.4 1.3 1 0 0 1 1 1 0 Sulfocyanin (SoxE) MacB_PCD PF12704.2 gi|219851440|ref|YP_002465872.1| - 0.087 12.3 0.7 0.094 12.2 0.5 1.2 1 0 0 1 1 1 0 MacB-like periplasmic core domain DUF442 PF04273.8 gi|219851440|ref|YP_002465872.1| - 0.096 12.5 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative phosphatase (DUF442) LemA PF04011.7 gi|219851441|ref|YP_002465873.1| - 7.7e-57 191.4 1.9 8.8e-57 191.2 1.3 1.0 1 0 0 1 1 1 1 LemA family IncA PF04156.9 gi|219851441|ref|YP_002465873.1| - 0.00029 20.4 1.3 0.00044 19.9 0.9 1.3 1 1 0 1 1 1 1 IncA protein Chordopox_A13L PF05961.6 gi|219851441|ref|YP_002465873.1| - 0.011 15.6 2.9 0.028 14.3 2.0 1.7 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Cep57_MT_bd PF06657.8 gi|219851441|ref|YP_002465873.1| - 0.028 14.3 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF948 PF06103.6 gi|219851441|ref|YP_002465873.1| - 0.067 13.0 7.8 1.1 9.2 1.4 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|219851441|ref|YP_002465873.1| - 0.09 12.6 1.4 0.36 10.6 0.5 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Trp_repressor PF01371.14 gi|219851441|ref|YP_002465873.1| - 0.09 12.6 0.4 10 6.1 0.1 2.4 2 0 0 2 2 2 0 Trp repressor protein EVI2A PF05399.6 gi|219851441|ref|YP_002465873.1| - 0.11 11.7 0.2 0.16 11.1 0.1 1.5 1 0 0 1 1 1 0 Ectropic viral integration site 2A protein (EVI2A) DUF3139 PF11337.3 gi|219851441|ref|YP_002465873.1| - 2.3 8.5 5.8 15 5.9 2.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF2207 PF09972.4 gi|219851442|ref|YP_002465874.1| - 5.5e-75 252.8 0.0 7.1e-75 252.5 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Radical_SAM PF04055.16 gi|219851443|ref|YP_002465875.1| - 1e-25 90.8 0.2 2e-25 89.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|219851443|ref|YP_002465875.1| - 5.7e-24 84.2 0.1 1e-23 83.4 0.1 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|219851443|ref|YP_002465875.1| - 4.2e-08 33.2 0.0 1.3e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219851443|ref|YP_002465875.1| - 8.2e-07 29.2 0.0 1.4e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_CBB3 PF13442.1 gi|219851443|ref|YP_002465875.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III FtsJ PF01728.14 gi|219851444|ref|YP_002465876.1| - 6.3e-48 163.1 0.0 7.1e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|219851444|ref|YP_002465876.1| - 0.0044 16.7 0.0 0.009 15.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851444|ref|YP_002465876.1| - 0.02 14.4 0.0 3.4 7.2 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain LamB_YcsF PF03746.11 gi|219851444|ref|YP_002465876.1| - 0.037 13.1 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 LamB/YcsF family PCNA_N PF00705.13 gi|219851445|ref|YP_002465877.1| - 3.2e-11 42.8 0.5 7e-11 41.7 0.3 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.11 gi|219851445|ref|YP_002465877.1| - 1.2e-08 34.0 0.0 2.8e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.10 gi|219851445|ref|YP_002465877.1| - 3.1e-07 30.3 0.0 1.2e-05 25.2 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|219851445|ref|YP_002465877.1| - 3.7e-05 22.9 0.0 4.9e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Rad9 DNA_primase_lrg PF04104.9 gi|219851446|ref|YP_002465878.1| - 8.2e-25 87.5 0.0 1.1e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit TraQ PF09679.5 gi|219851447|ref|YP_002465879.1| - 0.09 12.7 2.3 0.091 12.6 1.6 1.0 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF3487 PF11990.3 gi|219851447|ref|YP_002465879.1| - 0.87 8.9 3.9 0.97 8.8 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF1469 PF07332.6 gi|219851447|ref|YP_002465879.1| - 1.5 8.5 6.7 1.7 8.4 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) PepSY_TM_2 PF13703.1 gi|219851447|ref|YP_002465879.1| - 3.5 7.8 8.6 0.75 10.0 1.2 2.0 1 1 1 2 2 2 0 PepSY-associated TM helix DUF1019 PF06254.6 gi|219851448|ref|YP_002465880.1| - 0.11 12.7 0.0 1.1 9.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1019) NUDIX PF00293.23 gi|219851449|ref|YP_002465881.1| - 2.9e-19 69.0 0.0 5.4e-19 68.1 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.6 gi|219851449|ref|YP_002465881.1| - 8.2e-12 44.4 2.1 1.5e-11 43.5 1.5 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.6 gi|219851449|ref|YP_002465881.1| - 7.5e-09 35.8 0.0 1.4e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.2 gi|219851449|ref|YP_002465881.1| - 0.00079 19.1 0.3 0.0013 18.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219851449|ref|YP_002465881.1| - 0.088 12.0 5.9 2.8 7.2 0.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219851449|ref|YP_002465881.1| - 0.12 11.9 1.8 2.7 7.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|219851449|ref|YP_002465881.1| - 0.32 10.7 2.6 1.4 8.6 1.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal FBPase_3 PF01950.11 gi|219851450|ref|YP_002465882.1| - 1.1e-49 169.4 0.1 7.6e-39 133.7 0.0 2.6 1 1 0 2 2 2 2 Fructose-1,6-bisphosphatase FBPase PF00316.15 gi|219851451|ref|YP_002465883.1| - 3.6e-79 265.9 0.0 4.4e-79 265.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|219851451|ref|YP_002465883.1| - 3e-05 23.4 0.1 6.5e-05 22.3 0.1 1.5 2 0 0 2 2 2 1 Inositol monophosphatase family DeoC PF01791.4 gi|219851452|ref|YP_002465884.1| - 9.2e-44 149.4 0.1 1.1e-43 149.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AAA PF00004.24 gi|219851454|ref|YP_002465886.1| - 9.9e-100 329.9 0.0 1.6e-49 167.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|219851454|ref|YP_002465886.1| - 3.5e-25 87.7 0.8 2e-24 85.3 0.9 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|219851454|ref|YP_002465886.1| - 2.2e-16 59.6 0.0 2.3e-08 33.3 0.0 2.8 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|219851454|ref|YP_002465886.1| - 7.9e-15 55.1 0.0 1.7e-06 28.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|219851454|ref|YP_002465886.1| - 4.3e-13 49.6 0.0 1.2e-06 28.6 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|219851454|ref|YP_002465886.1| - 6.6e-13 48.9 0.2 0.00026 21.1 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|219851454|ref|YP_002465886.1| - 2.5e-12 47.6 0.0 0.00021 22.0 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|219851454|ref|YP_002465886.1| - 6.7e-11 42.1 0.0 0.00019 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|219851454|ref|YP_002465886.1| - 7.4e-11 41.5 0.1 2.3e-10 39.9 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.8 gi|219851454|ref|YP_002465886.1| - 7.8e-11 41.3 0.0 0.00027 19.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|219851454|ref|YP_002465886.1| - 2.4e-10 40.4 0.0 0.0012 18.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|219851454|ref|YP_002465886.1| - 1.7e-09 37.1 0.0 0.0002 20.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.9 gi|219851454|ref|YP_002465886.1| - 2.3e-09 37.1 2.3 0.0044 16.7 0.0 4.5 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|219851454|ref|YP_002465886.1| - 1.7e-08 34.0 4.7 0.17 11.2 0.0 4.3 3 1 1 4 4 4 3 AAA domain AAA_19 PF13245.1 gi|219851454|ref|YP_002465886.1| - 1.9e-08 33.9 1.7 0.0029 17.3 0.1 3.2 3 0 0 3 3 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|219851454|ref|YP_002465886.1| - 3.5e-08 33.0 0.4 0.004 16.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|219851454|ref|YP_002465886.1| - 1.3e-07 31.9 0.0 0.015 15.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|219851454|ref|YP_002465886.1| - 1.4e-07 30.8 0.2 0.0065 15.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|219851454|ref|YP_002465886.1| - 4.7e-07 29.9 0.0 0.036 14.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|219851454|ref|YP_002465886.1| - 5.8e-07 29.6 0.0 0.02 15.0 0.0 2.8 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|219851454|ref|YP_002465886.1| - 1.5e-06 28.0 0.0 0.083 12.5 0.0 3.7 2 1 1 3 3 3 2 Archaeal ATPase DUF815 PF05673.8 gi|219851454|ref|YP_002465886.1| - 1.5e-06 27.3 0.0 0.045 12.6 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|219851454|ref|YP_002465886.1| - 1.8e-06 28.2 0.1 0.11 12.7 0.0 3.1 3 0 0 3 3 2 2 ABC transporter Sigma54_activat PF00158.21 gi|219851454|ref|YP_002465886.1| - 1.9e-06 27.4 0.0 0.15 11.5 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|219851454|ref|YP_002465886.1| - 5e-06 26.2 0.1 0.31 10.6 0.0 4.0 3 1 1 4 4 4 1 NACHT domain NB-ARC PF00931.17 gi|219851454|ref|YP_002465886.1| - 1.2e-05 24.3 0.0 0.14 10.9 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.12 gi|219851454|ref|YP_002465886.1| - 1.5e-05 24.0 0.1 0.062 12.1 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|219851454|ref|YP_002465886.1| - 1.6e-05 24.6 0.2 0.19 11.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|219851454|ref|YP_002465886.1| - 1.7e-05 24.0 1.1 0.36 9.9 0.0 3.9 2 1 0 3 3 3 1 KaiC AAA_3 PF07726.6 gi|219851454|ref|YP_002465886.1| - 2e-05 24.2 0.0 0.22 11.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|219851454|ref|YP_002465886.1| - 2.7e-05 24.2 0.0 0.13 12.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|219851454|ref|YP_002465886.1| - 3.7e-05 23.0 0.1 0.28 10.3 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein SKI PF01202.17 gi|219851454|ref|YP_002465886.1| - 0.00011 22.1 0.0 0.53 10.1 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase AAA_11 PF13086.1 gi|219851454|ref|YP_002465886.1| - 0.00093 18.8 0.0 1.3 8.5 0.0 2.5 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|219851454|ref|YP_002465886.1| - 0.001 18.1 0.0 0.24 10.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|219851454|ref|YP_002465886.1| - 0.0011 18.7 3.2 2.5 7.7 0.0 3.9 3 2 1 4 4 4 1 NTPase KAP_NTPase PF07693.9 gi|219851454|ref|YP_002465886.1| - 0.0012 17.8 0.0 1.4 7.7 0.0 3.1 2 1 0 3 3 3 1 KAP family P-loop domain T2SE PF00437.15 gi|219851454|ref|YP_002465886.1| - 0.0013 17.7 0.0 1.5 7.6 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|219851454|ref|YP_002465886.1| - 0.0013 18.3 0.0 1.8 8.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|219851454|ref|YP_002465886.1| - 0.0017 17.8 0.0 0.87 9.0 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|219851454|ref|YP_002465886.1| - 0.0024 17.5 0.0 2.9 7.5 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|219851454|ref|YP_002465886.1| - 0.0028 17.5 0.0 2.4 7.9 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|219851454|ref|YP_002465886.1| - 0.0032 17.1 0.0 3.8 7.0 0.0 2.9 2 2 0 2 2 2 0 Bacterial dnaA protein AFG1_ATPase PF03969.11 gi|219851454|ref|YP_002465886.1| - 0.0053 15.6 0.1 1.5 7.5 0.0 2.7 3 0 0 3 3 2 1 AFG1-like ATPase Cytidylate_kin2 PF13189.1 gi|219851454|ref|YP_002465886.1| - 0.014 15.3 0.0 5.5 6.8 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family Viral_helicase1 PF01443.13 gi|219851454|ref|YP_002465886.1| - 0.018 14.5 0.0 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|219851454|ref|YP_002465886.1| - 0.039 14.2 1.2 15 5.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain KTI12 PF08433.5 gi|219851454|ref|YP_002465886.1| - 0.045 12.9 0.0 10 5.2 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|219851454|ref|YP_002465886.1| - 0.048 13.0 0.1 12 5.2 0.0 3.2 2 1 1 3 3 3 0 Guanylate kinase IPT PF01745.11 gi|219851454|ref|YP_002465886.1| - 0.089 11.9 0.1 12 5.0 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase AAA_10 PF12846.2 gi|219851454|ref|YP_002465886.1| - 0.097 12.0 0.5 3.3 7.0 0.0 3.1 4 0 0 4 4 4 0 AAA-like domain 5-FTHF_cyc-lig PF01812.15 gi|219851455|ref|YP_002465887.1| - 4.4e-40 137.4 0.0 4.9e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Hyd_WA PF06462.7 gi|219851455|ref|YP_002465887.1| - 0.063 12.9 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Propeller CdhC PF03598.10 gi|219851456|ref|YP_002465888.1| - 5.7e-186 617.9 0.0 6.9e-186 617.6 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CdhD PF03599.11 gi|219851457|ref|YP_002465889.1| - 2.9e-34 118.2 0.0 3.3e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.11 gi|219851458|ref|YP_002465890.1| - 2.8e-94 315.7 0.0 3.4e-94 315.5 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|219851458|ref|YP_002465890.1| - 3.8e-13 48.7 2.9 7.8e-13 47.7 2.0 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster YhfH PF14149.1 gi|219851458|ref|YP_002465890.1| - 0.004 16.9 0.1 0.0073 16.0 0.1 1.4 1 0 0 1 1 1 1 YhfH-like protein DUF4445 PF14574.1 gi|219851459|ref|YP_002465891.1| - 1.7e-142 474.5 2.9 2e-142 474.2 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|219851459|ref|YP_002465891.1| - 7.9e-10 38.3 0.0 2.5e-09 36.7 0.0 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BcrAD_BadFG PF01869.15 gi|219851459|ref|YP_002465891.1| - 0.00018 20.8 0.1 0.00051 19.4 0.0 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DUF302 PF03625.9 gi|219851459|ref|YP_002465891.1| - 0.12 11.9 0.1 0.75 9.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF302 CbiA PF01656.18 gi|219851461|ref|YP_002465893.1| - 6e-21 74.7 0.0 8.3e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|219851461|ref|YP_002465893.1| - 7e-06 25.3 0.0 9.9e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_16 PF13191.1 gi|219851461|ref|YP_002465893.1| - 0.00094 19.2 0.0 0.0022 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|219851461|ref|YP_002465893.1| - 0.0015 17.7 0.0 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin YhjQ PF06564.7 gi|219851461|ref|YP_002465893.1| - 0.0016 17.8 0.0 0.0067 15.8 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein Torsin PF06309.6 gi|219851461|ref|YP_002465893.1| - 0.0038 17.1 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 Torsin Fer4_NifH PF00142.13 gi|219851461|ref|YP_002465893.1| - 0.0076 15.4 0.0 0.02 14.0 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family KAP_NTPase PF07693.9 gi|219851461|ref|YP_002465893.1| - 0.021 13.8 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_19 PF13245.1 gi|219851461|ref|YP_002465893.1| - 0.034 13.8 2.4 0.23 11.2 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain MobB PF03205.9 gi|219851461|ref|YP_002465893.1| - 0.036 13.7 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|219851461|ref|YP_002465893.1| - 0.048 14.4 0.4 0.087 13.6 0.3 1.6 1 1 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|219851461|ref|YP_002465893.1| - 0.05 12.6 0.0 0.54 9.2 0.0 2.0 2 0 0 2 2 2 0 ATPase MipZ NB-ARC PF00931.17 gi|219851461|ref|YP_002465893.1| - 0.063 12.1 0.1 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ArgK PF03308.11 gi|219851461|ref|YP_002465893.1| - 0.07 11.8 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|219851461|ref|YP_002465893.1| - 0.093 13.0 0.1 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|219851461|ref|YP_002465893.1| - 0.095 12.2 0.5 10 5.6 0.1 2.8 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|219851461|ref|YP_002465893.1| - 0.097 12.2 0.2 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|219851461|ref|YP_002465893.1| - 0.11 11.3 0.1 0.16 10.8 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein VirC1 PF07015.6 gi|219851461|ref|YP_002465893.1| - 0.12 11.4 0.0 2 7.4 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein APS_kinase PF01583.15 gi|219851461|ref|YP_002465893.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase Pectate_lyase_3 PF12708.2 gi|219851462|ref|YP_002465894.1| - 8.8e-57 192.8 40.2 8.2e-52 176.5 4.5 3.8 3 1 0 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219851462|ref|YP_002465894.1| - 8.5e-17 61.3 56.9 4.3e-07 29.8 9.1 5.7 2 2 3 5 5 5 5 Right handed beta helix region End_N_terminal PF12218.3 gi|219851462|ref|YP_002465894.1| - 0.0027 17.1 0.0 0.023 14.1 0.0 2.5 2 0 0 2 2 2 1 N terminal extension of bacteriophage endosialidase Flavokinase PF01687.12 gi|219851462|ref|YP_002465894.1| - 0.069 13.0 0.8 2.1 8.2 0.1 2.8 2 0 0 2 2 2 0 Riboflavin kinase Pectate_lyase_3 PF12708.2 gi|219851463|ref|YP_002465895.1| - 1.3e-49 169.4 7.1 1.3e-49 169.4 4.9 1.6 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219851463|ref|YP_002465895.1| - 6.3e-13 48.7 24.1 2.2e-05 24.2 2.9 3.2 1 1 2 3 3 3 3 Right handed beta helix region End_N_terminal PF12218.3 gi|219851463|ref|YP_002465895.1| - 0.0028 17.0 0.0 0.0071 15.7 0.0 1.7 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Polysacc_deac_1 PF01522.16 gi|219851464|ref|YP_002465896.1| - 6.5e-07 29.0 0.0 1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF560 PF04575.8 gi|219851464|ref|YP_002465896.1| - 0.026 13.7 0.1 0.037 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF560) Imm8 PF15560.1 gi|219851464|ref|YP_002465896.1| - 0.042 13.5 0.2 0.2 11.3 0.0 2.0 1 1 1 2 2 2 0 Immunity protein 8 DegT_DnrJ_EryC1 PF01041.12 gi|219851465|ref|YP_002465897.1| - 3.2e-129 431.1 0.0 3.6e-129 430.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|219851465|ref|YP_002465897.1| - 4.5e-07 29.1 0.0 7.2e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|219851465|ref|YP_002465897.1| - 1.7e-05 23.7 0.1 2.3e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|219851465|ref|YP_002465897.1| - 2e-05 23.0 0.0 3.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|219851465|ref|YP_002465897.1| - 0.00011 21.4 0.0 0.00027 20.1 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Hexapep PF00132.19 gi|219851466|ref|YP_002465898.1| - 3.1e-23 80.1 20.3 9.5e-08 31.2 1.2 5.5 4 1 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219851466|ref|YP_002465898.1| - 2.2e-13 49.5 19.4 4.8e-07 29.2 0.5 5.2 5 2 1 6 6 6 5 Hexapeptide repeat of succinyl-transferase PMT_2 PF13231.1 gi|219851467|ref|YP_002465899.1| - 0.0026 17.6 20.5 0.0026 17.6 14.2 4.1 4 1 0 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Herpes_pp85 PF04637.7 gi|219851467|ref|YP_002465899.1| - 0.047 11.9 0.4 0.071 11.4 0.3 1.1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) 7TMR-DISM_7TM PF07695.6 gi|219851468|ref|YP_002465900.1| - 0.0066 16.1 2.5 0.011 15.4 1.7 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF1772 PF08592.6 gi|219851468|ref|YP_002465900.1| - 0.012 15.3 0.1 1.6 8.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) DUF4006 PF13179.1 gi|219851469|ref|YP_002465901.1| - 1.7 8.2 0.0 1.7 8.2 0.0 2.9 3 0 0 3 3 3 0 Family of unknown function (DUF4006) DoxX_2 PF13564.1 gi|219851469|ref|YP_002465901.1| - 4.9 7.1 13.1 1.8 8.5 5.2 2.2 2 0 0 2 2 2 0 DoxX-like family DUF58 PF01882.13 gi|219851470|ref|YP_002465902.1| - 3.1e-10 40.0 0.0 6e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF2236 PF09995.4 gi|219851470|ref|YP_002465902.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) AAA_3 PF07726.6 gi|219851471|ref|YP_002465903.1| - 1e-52 177.1 0.0 1.6e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|219851471|ref|YP_002465903.1| - 8.1e-12 45.0 0.0 1.6e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|219851471|ref|YP_002465903.1| - 9.6e-09 34.4 0.0 4e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|219851471|ref|YP_002465903.1| - 2.4e-06 27.7 0.0 5e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|219851471|ref|YP_002465903.1| - 9.1e-05 21.6 0.1 0.00021 20.4 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|219851471|ref|YP_002465903.1| - 0.00047 19.6 0.0 0.0038 16.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|219851471|ref|YP_002465903.1| - 0.012 15.3 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|219851471|ref|YP_002465903.1| - 0.012 14.7 0.1 0.66 9.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|219851471|ref|YP_002465903.1| - 0.034 14.2 0.0 0.92 9.6 0.0 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|219851471|ref|YP_002465903.1| - 0.11 12.1 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|219851471|ref|YP_002465903.1| - 0.11 13.2 0.0 0.23 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|219851471|ref|YP_002465903.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4350 PF14258.1 gi|219851472|ref|YP_002465904.1| - 1.7e-08 34.5 0.1 4.8e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|219851472|ref|YP_002465904.1| - 0.0003 20.3 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system FixQ PF05545.6 gi|219851472|ref|YP_002465904.1| - 0.17 11.5 0.9 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4129 PF13559.1 gi|219851473|ref|YP_002465905.1| - 4e-06 26.7 0.0 7.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|219851473|ref|YP_002465905.1| - 0.00024 21.0 0.0 0.00053 19.9 0.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF3522 PF12036.3 gi|219851474|ref|YP_002465906.1| - 0.79 9.4 6.8 0.93 9.2 4.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) UPF0233 PF06781.7 gi|219851474|ref|YP_002465906.1| - 1.1 8.9 7.7 0.44 10.1 1.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) MNHE PF01899.11 gi|219851474|ref|YP_002465906.1| - 3.9 7.0 7.9 4.4 6.9 5.5 1.1 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit DUF1616 PF07760.6 gi|219851475|ref|YP_002465907.1| - 3e-89 298.9 4.4 3.3e-89 298.8 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) 7TMR-DISM_7TM PF07695.6 gi|219851475|ref|YP_002465907.1| - 0.23 11.1 10.2 1.9 8.0 4.2 2.3 2 0 0 2 2 2 0 7TM diverse intracellular signalling FA_desaturase PF00487.19 gi|219851475|ref|YP_002465907.1| - 0.67 9.3 4.7 0.38 10.1 1.6 1.8 1 1 1 2 2 2 0 Fatty acid desaturase UDPG_MGDP_dh_N PF03721.9 gi|219851476|ref|YP_002465908.1| - 2.1e-32 112.0 0.0 3.1e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|219851476|ref|YP_002465908.1| - 2.6e-20 72.4 0.0 5.9e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|219851476|ref|YP_002465908.1| - 1e-18 67.4 0.0 3.8e-18 65.5 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.17 gi|219851477|ref|YP_002465909.1| - 2.2e-19 70.1 0.4 3.9e-19 69.3 0.1 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|219851477|ref|YP_002465909.1| - 2.4e-08 33.9 0.2 7.7e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|219851477|ref|YP_002465909.1| - 3.5e-05 24.1 0.0 7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|219851477|ref|YP_002465909.1| - 0.00016 20.9 0.0 0.00025 20.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|219851477|ref|YP_002465909.1| - 0.0002 21.6 0.1 0.00062 20.0 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|219851477|ref|YP_002465909.1| - 0.017 15.6 0.1 0.04 14.4 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain IlvN PF07991.7 gi|219851477|ref|YP_002465909.1| - 0.031 13.6 0.1 0.073 12.4 0.1 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|219851477|ref|YP_002465909.1| - 0.058 12.1 0.0 0.082 11.6 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA_C PF02894.12 gi|219851477|ref|YP_002465909.1| - 0.099 12.4 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain Glycos_transf_2 PF00535.21 gi|219851478|ref|YP_002465910.1| - 2.1e-23 82.8 0.0 3.5e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219851478|ref|YP_002465910.1| - 9e-05 22.3 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Pectate_lyase_3 PF12708.2 gi|219851479|ref|YP_002465911.1| - 4.7e-56 190.4 7.0 4.7e-56 190.4 4.9 1.8 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219851479|ref|YP_002465911.1| - 2.6e-11 43.5 31.9 3.7e-06 26.7 3.5 4.0 2 1 2 4 4 4 3 Right handed beta helix region End_N_terminal PF12218.3 gi|219851479|ref|YP_002465911.1| - 0.0036 16.7 0.0 0.0097 15.3 0.0 1.8 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Polysacc_synt PF01943.12 gi|219851480|ref|YP_002465912.1| - 9.3e-15 54.6 28.8 9.3e-15 54.6 19.9 2.8 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|219851480|ref|YP_002465912.1| - 3.7e-11 42.9 30.6 3.7e-11 42.9 21.2 2.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein FrhB_FdhB_C PF04432.8 gi|219851481|ref|YP_002465913.1| - 1.2e-23 83.2 0.1 2.1e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|219851481|ref|YP_002465913.1| - 4.5e-13 48.8 0.0 1.1e-12 47.5 0.0 1.7 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|219851481|ref|YP_002465913.1| - 6.1e-08 31.9 8.8 8.6e-06 25.1 1.1 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851481|ref|YP_002465913.1| - 5.3e-06 26.2 4.5 5.3e-06 26.2 3.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851481|ref|YP_002465913.1| - 6.4e-06 26.3 5.7 6.4e-06 26.3 3.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851481|ref|YP_002465913.1| - 9.4e-06 25.9 6.1 9.4e-06 25.9 4.2 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851481|ref|YP_002465913.1| - 0.00095 18.9 9.0 0.00095 18.9 6.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851481|ref|YP_002465913.1| - 0.0021 17.8 12.9 0.043 13.7 2.2 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851481|ref|YP_002465913.1| - 0.0057 17.3 7.4 0.0057 17.3 5.1 2.7 2 1 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|219851481|ref|YP_002465913.1| - 0.0099 15.7 1.0 0.0099 15.7 0.7 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain GAD-like PF08887.6 gi|219851481|ref|YP_002465913.1| - 0.046 13.7 0.4 0.28 11.2 0.0 2.3 2 0 0 2 2 2 0 GAD-like domain Fer4_18 PF13746.1 gi|219851481|ref|YP_002465913.1| - 0.11 12.9 11.4 0.042 14.2 1.3 3.3 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219851481|ref|YP_002465913.1| - 0.12 12.9 7.4 0.054 14.0 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219851481|ref|YP_002465913.1| - 0.44 10.9 9.5 0.36 11.2 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219851481|ref|YP_002465913.1| - 0.49 10.4 12.6 0.26 11.3 5.7 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851481|ref|YP_002465913.1| - 1.8 9.1 23.9 0.062 13.6 1.1 3.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|219851481|ref|YP_002465913.1| - 7 7.4 23.1 0.25 11.9 3.6 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain PS_pyruv_trans PF04230.8 gi|219851482|ref|YP_002465914.1| - 1.7e-31 110.0 0.0 2.8e-31 109.2 0.0 1.4 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Glycos_transf_2 PF00535.21 gi|219851483|ref|YP_002465915.1| - 3.7e-34 117.8 0.0 5.7e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219851483|ref|YP_002465915.1| - 3.4e-23 82.6 0.0 4.5e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|219851483|ref|YP_002465915.1| - 1.6e-14 53.6 0.0 2.9e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219851483|ref|YP_002465915.1| - 0.095 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF3473 PF11959.3 gi|219851484|ref|YP_002465916.1| - 7.3e-21 74.0 0.0 1.1e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|219851484|ref|YP_002465916.1| - 5.3e-18 64.8 0.0 7.2e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Potassium_chann PF11404.3 gi|219851484|ref|YP_002465916.1| - 3.5 7.5 5.7 26 4.7 0.4 3.1 3 0 0 3 3 3 0 Potassium voltage-gated channel Acetyltransf_6 PF13480.1 gi|219851485|ref|YP_002465917.1| - 3.8e-14 52.8 0.0 5.5e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|219851485|ref|YP_002465917.1| - 2.3e-12 46.3 0.0 1.1e-05 24.3 0.0 3.0 2 1 1 3 3 3 3 FemAB family DUF482 PF04339.7 gi|219851485|ref|YP_002465917.1| - 0.0014 17.5 0.0 0.0088 14.9 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function, DUF482 Pectate_lyase_3 PF12708.2 gi|219851486|ref|YP_002465918.1| - 2.3e-52 178.3 5.9 2.3e-52 178.3 4.1 1.9 2 0 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219851486|ref|YP_002465918.1| - 1e-12 48.0 25.6 5.3e-05 23.0 1.7 3.2 1 1 2 3 3 3 3 Right handed beta helix region End_N_terminal PF12218.3 gi|219851486|ref|YP_002465918.1| - 0.0034 16.8 0.0 0.0092 15.4 0.0 1.8 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase DUF354 PF04007.7 gi|219851487|ref|YP_002465919.1| - 6.9e-23 81.0 0.0 8.1e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_1 PF00534.15 gi|219851487|ref|YP_002465919.1| - 0.014 14.8 0.0 0.033 13.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 PIG-L PF02585.12 gi|219851488|ref|YP_002465920.1| - 7.3e-19 68.5 0.0 1e-18 68.0 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase ATPgrasp_Ter PF15632.1 gi|219851489|ref|YP_002465921.1| - 1e-82 277.5 0.0 1.1e-82 277.3 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|219851489|ref|YP_002465921.1| - 1.1e-20 74.1 0.0 1.8e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|219851489|ref|YP_002465921.1| - 7.5e-07 29.1 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|219851489|ref|YP_002465921.1| - 9.5e-06 25.0 0.0 0.019 14.2 0.0 2.1 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|219851489|ref|YP_002465921.1| - 0.077 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Dehydratase_MU PF02288.10 gi|219851489|ref|YP_002465921.1| - 0.11 12.2 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Dehydratase medium subunit PHP PF02811.14 gi|219851490|ref|YP_002465922.1| - 2e-12 47.2 0.0 2.5e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|219851490|ref|YP_002465922.1| - 0.019 14.4 0.0 0.058 12.9 0.0 1.8 1 0 0 1 1 1 0 PHP-associated Asn_synthase PF00733.16 gi|219851491|ref|YP_002465923.1| - 1.5e-47 162.2 0.0 2.2e-47 161.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|219851491|ref|YP_002465923.1| - 2.5e-44 150.0 0.0 3.9e-44 149.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|219851491|ref|YP_002465923.1| - 9.1e-42 142.1 0.0 1.6e-41 141.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|219851491|ref|YP_002465923.1| - 4.9e-05 22.6 0.1 9.3e-05 21.7 0.1 1.4 1 0 0 1 1 1 1 Aluminium induced protein GATase_2 PF00310.16 gi|219851491|ref|YP_002465923.1| - 5.5e-05 22.0 0.0 0.018 13.7 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Cyt-b5 PF00173.23 gi|219851491|ref|YP_002465923.1| - 0.079 12.7 0.3 0.59 9.9 0.0 2.3 2 0 0 2 2 2 0 Cytochrome b5-like Heme/Steroid binding domain EAF PF09816.4 gi|219851491|ref|YP_002465923.1| - 0.093 12.7 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase II transcription elongation factor Glycos_transf_1 PF00534.15 gi|219851492|ref|YP_002465924.1| - 6.5e-38 129.8 0.0 1.3e-37 128.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851492|ref|YP_002465924.1| - 9.3e-20 71.1 0.0 1.6e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|219851492|ref|YP_002465924.1| - 8.4e-12 45.1 0.0 1.6e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|219851492|ref|YP_002465924.1| - 2.2e-10 40.6 0.0 3e-09 37.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219851492|ref|YP_002465924.1| - 4.7e-10 39.8 0.0 7e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|219851492|ref|YP_002465924.1| - 5.1e-10 39.3 0.0 9.5e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 FAD_syn PF06574.7 gi|219851492|ref|YP_002465924.1| - 0.051 13.1 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF3492 PF11997.3 gi|219851492|ref|YP_002465924.1| - 0.11 11.9 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) NHL PF01436.16 gi|219851493|ref|YP_002465925.1| - 1.7e-57 188.5 18.0 4.6e-11 42.0 0.1 6.9 7 0 0 7 7 7 6 NHL repeat SGL PF08450.7 gi|219851493|ref|YP_002465925.1| - 1.6e-16 60.4 12.9 0.00068 19.0 0.1 5.7 1 1 5 6 6 6 4 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219851493|ref|YP_002465925.1| - 7.4e-15 54.4 15.3 0.016 14.9 0.1 6.5 6 0 0 6 6 6 4 Beta-propeller repeat PsbR PF04725.7 gi|219851493|ref|YP_002465925.1| - 1.1e-06 28.5 27.5 0.048 13.6 0.3 6.2 1 1 5 6 6 6 3 Photosystem II 10 kDa polypeptide PsbR Ldl_recept_b PF00058.12 gi|219851493|ref|YP_002465925.1| - 7.1e-06 26.2 0.0 28 5.1 0.0 6.2 6 0 0 6 6 6 0 Low-density lipoprotein receptor repeat class B EF-hand_1 PF00036.27 gi|219851493|ref|YP_002465925.1| - 9.1e-05 21.4 1.9 0.0095 15.1 0.1 2.6 2 0 0 2 2 2 1 EF hand Death_2 PF14786.1 gi|219851493|ref|YP_002465925.1| - 0.00036 20.2 0.0 17 5.1 0.0 4.6 3 1 1 5 5 5 0 Tube Death domain US22 PF02393.11 gi|219851493|ref|YP_002465925.1| - 0.001 19.0 3.8 7.5 6.6 0.1 4.8 3 1 0 4 4 4 1 US22 like EF-hand_6 PF13405.1 gi|219851493|ref|YP_002465925.1| - 0.0087 15.8 1.0 0.39 10.7 0.1 2.6 2 0 0 2 2 2 1 EF-hand domain SdiA-regulated PF06977.6 gi|219851493|ref|YP_002465925.1| - 0.03 13.2 1.3 29 3.4 0.0 4.5 5 1 0 6 6 6 0 SdiA-regulated EF-hand_8 PF13833.1 gi|219851493|ref|YP_002465925.1| - 0.039 13.5 3.1 0.21 11.1 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.1 gi|219851493|ref|YP_002465925.1| - 0.19 11.8 2.6 1.6 8.9 1.8 2.1 1 1 0 1 1 1 0 EF-hand domain pair IN_DBD_C PF00552.16 gi|219851493|ref|YP_002465925.1| - 2.3 7.7 4.3 9.1 5.8 0.0 3.7 6 0 0 6 6 6 0 Integrase DNA binding domain Fer4_11 PF13247.1 gi|219851494|ref|YP_002465926.1| - 2.3e-25 88.3 15.1 1.1e-24 86.1 7.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851494|ref|YP_002465926.1| - 1.9e-13 50.4 25.3 1.6e-06 28.2 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851494|ref|YP_002465926.1| - 2.2e-13 50.3 30.5 2.4e-06 27.8 8.0 2.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851494|ref|YP_002465926.1| - 2.9e-11 42.7 40.1 4e-05 23.3 3.5 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851494|ref|YP_002465926.1| - 1.2e-09 37.7 27.7 2.1e-05 24.2 9.6 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851494|ref|YP_002465926.1| - 1.6e-09 36.9 38.3 6.9e-06 25.4 2.9 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851494|ref|YP_002465926.1| - 9e-07 29.5 25.2 0.00077 20.1 1.6 4.4 2 2 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|219851494|ref|YP_002465926.1| - 1.5e-06 28.1 23.9 0.00053 19.9 5.0 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851494|ref|YP_002465926.1| - 3.3e-06 26.6 37.5 0.0032 17.2 2.6 4.6 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219851494|ref|YP_002465926.1| - 0.00045 20.3 38.6 0.0013 18.9 2.1 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851494|ref|YP_002465926.1| - 0.00096 18.9 29.5 0.027 14.3 3.8 3.6 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851494|ref|YP_002465926.1| - 0.0035 17.6 27.6 0.11 12.8 0.3 4.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851494|ref|YP_002465926.1| - 0.0054 17.1 46.1 0.057 14.0 2.1 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fe_dep_repr_C PF02742.10 gi|219851494|ref|YP_002465926.1| - 0.21 11.2 2.3 17 5.1 1.6 2.4 1 1 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Fer4_20 PF14691.1 gi|219851494|ref|YP_002465926.1| - 2.3 7.8 25.5 2.1 8.0 2.8 3.7 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Prismane PF03063.15 gi|219851495|ref|YP_002465927.1| - 1.6e-175 584.4 0.3 1.8e-175 584.2 0.2 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family 2Fe-2S_thioredx PF01257.14 gi|219851496|ref|YP_002465928.1| - 2.3e-43 147.2 0.0 7.4e-42 142.3 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF2059 PF09832.4 gi|219851496|ref|YP_002465928.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) Complex1_51K PF01512.12 gi|219851497|ref|YP_002465929.1| - 2.4e-43 147.4 0.0 3.7e-43 146.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|219851497|ref|YP_002465929.1| - 1.3e-13 49.8 0.0 2.9e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|219851497|ref|YP_002465929.1| - 0.00016 21.4 2.4 0.00016 21.4 1.7 2.7 3 0 0 3 3 3 1 SLBB domain 2Fe-2S_thioredx PF01257.14 gi|219851497|ref|YP_002465929.1| - 0.039 13.5 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin Fer2_4 PF13510.1 gi|219851498|ref|YP_002465930.1| - 4e-17 61.7 0.5 1.2e-16 60.2 0.3 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.1 gi|219851498|ref|YP_002465930.1| - 5.2e-08 33.1 9.9 0.0026 18.1 0.7 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|219851498|ref|YP_002465930.1| - 5.8e-08 32.3 1.8 5.8e-08 32.3 1.2 3.2 4 1 0 4 4 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|219851498|ref|YP_002465930.1| - 5.1e-07 29.8 16.3 6.7e-05 23.0 3.0 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219851498|ref|YP_002465930.1| - 6.8e-07 29.0 4.7 6.8e-07 29.0 3.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851498|ref|YP_002465930.1| - 6.9e-07 29.5 9.4 7.5e-06 26.2 2.0 3.1 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219851498|ref|YP_002465930.1| - 4.4e-06 26.3 24.4 2.8e-05 23.7 6.5 3.1 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851498|ref|YP_002465930.1| - 4.1e-05 23.0 5.8 4.1e-05 23.0 4.0 3.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219851498|ref|YP_002465930.1| - 5.1e-05 22.9 14.8 0.0011 18.6 3.8 4.0 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219851498|ref|YP_002465930.1| - 0.00018 21.2 13.1 0.0015 18.3 2.6 4.0 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219851498|ref|YP_002465930.1| - 0.00021 21.2 9.1 0.00021 21.2 6.3 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851498|ref|YP_002465930.1| - 0.00064 20.4 11.0 0.02 15.6 2.4 3.1 3 1 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|219851498|ref|YP_002465930.1| - 0.0057 16.8 4.2 0.0057 16.8 2.9 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|219851498|ref|YP_002465930.1| - 0.0061 17.0 7.1 0.0061 17.0 4.9 4.3 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219851498|ref|YP_002465930.1| - 0.0068 16.9 9.8 0.5 10.9 1.3 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|219851498|ref|YP_002465930.1| - 0.11 12.8 20.6 0.33 11.3 7.9 3.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain RHH_1 PF01402.16 gi|219851498|ref|YP_002465930.1| - 0.11 12.3 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Clr5 PF14420.1 gi|219851498|ref|YP_002465930.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Clr5 domain Fer4_13 PF13370.1 gi|219851498|ref|YP_002465930.1| - 2.1 8.7 12.2 2.5 8.5 0.7 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|219851499|ref|YP_002465931.1| - 8.4e-25 87.3 0.0 1.2e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|219851499|ref|YP_002465931.1| - 2.2e-08 33.5 0.1 6.6e-07 28.6 0.0 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase UPF0079 PF02367.12 gi|219851499|ref|YP_002465931.1| - 0.0003 20.3 0.8 0.023 14.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|219851499|ref|YP_002465931.1| - 0.0016 18.7 0.0 0.0023 18.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_19 PF13245.1 gi|219851499|ref|YP_002465931.1| - 0.0025 17.5 1.2 0.012 15.2 0.0 2.3 2 1 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|219851499|ref|YP_002465931.1| - 0.0026 18.0 0.0 0.012 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|219851499|ref|YP_002465931.1| - 0.0046 17.7 0.0 0.015 16.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|219851499|ref|YP_002465931.1| - 0.0071 16.0 0.2 0.014 15.0 0.2 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.12 gi|219851499|ref|YP_002465931.1| - 0.0081 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein ParA PF10609.4 gi|219851499|ref|YP_002465931.1| - 0.0097 15.7 0.1 0.024 14.5 0.0 1.7 2 0 0 2 2 1 1 ParA/MinD ATPase like MobB PF03205.9 gi|219851499|ref|YP_002465931.1| - 0.012 15.2 0.1 0.049 13.3 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|219851499|ref|YP_002465931.1| - 0.013 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|219851499|ref|YP_002465931.1| - 0.014 14.8 0.1 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain YhjQ PF06564.7 gi|219851499|ref|YP_002465931.1| - 0.014 14.7 0.0 0.5 9.6 0.0 2.1 2 0 0 2 2 2 0 YhjQ protein ArgK PF03308.11 gi|219851499|ref|YP_002465931.1| - 0.017 13.8 0.3 0.042 12.6 0.0 1.6 2 0 0 2 2 2 0 ArgK protein AAA_31 PF13614.1 gi|219851499|ref|YP_002465931.1| - 0.024 14.5 0.0 0.46 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|219851499|ref|YP_002465931.1| - 0.025 14.2 0.1 0.059 13.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) PGM_PMM_II PF02879.11 gi|219851499|ref|YP_002465931.1| - 0.025 14.8 0.0 0.055 13.8 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KAP_NTPase PF07693.9 gi|219851499|ref|YP_002465931.1| - 0.027 13.4 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_28 PF13521.1 gi|219851499|ref|YP_002465931.1| - 0.031 14.2 0.1 0.061 13.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|219851499|ref|YP_002465931.1| - 0.032 13.8 0.1 0.062 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|219851499|ref|YP_002465931.1| - 0.042 13.3 0.4 0.09 12.3 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|219851499|ref|YP_002465931.1| - 0.066 12.6 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mur_ligase_M PF08245.7 gi|219851499|ref|YP_002465931.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Mur ligase middle domain NB-ARC PF00931.17 gi|219851499|ref|YP_002465931.1| - 0.078 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain PEP-utilizers PF00391.18 gi|219851499|ref|YP_002465931.1| - 0.089 12.3 0.1 0.51 9.9 0.1 2.3 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain APS_kinase PF01583.15 gi|219851499|ref|YP_002465931.1| - 0.11 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Pox_A32 PF04665.7 gi|219851499|ref|YP_002465931.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein Ras PF00071.17 gi|219851499|ref|YP_002465931.1| - 0.12 11.7 0.1 0.3 10.4 0.0 1.6 2 0 0 2 2 2 0 Ras family DUF258 PF03193.11 gi|219851499|ref|YP_002465931.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DAP3 PF10236.4 gi|219851499|ref|YP_002465931.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 CHAT PF12770.2 gi|219851500|ref|YP_002465932.1| - 2.3e-48 164.7 0.0 3.5e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 CHAT domain TPR_11 PF13414.1 gi|219851500|ref|YP_002465932.1| - 9.2e-16 57.2 31.1 1.4e-06 27.8 0.2 8.0 2 1 6 9 9 9 5 TPR repeat TPR_12 PF13424.1 gi|219851500|ref|YP_002465932.1| - 2.2e-15 56.3 22.7 0.0017 18.2 0.1 9.7 4 2 5 10 10 10 6 Tetratricopeptide repeat TPR_10 PF13374.1 gi|219851500|ref|YP_002465932.1| - 2.6e-09 36.6 16.7 0.038 13.9 0.0 8.3 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219851500|ref|YP_002465932.1| - 9.1e-05 21.9 20.9 0.13 11.8 0.0 9.2 11 0 0 11 11 11 2 Tetratricopeptide repeat SNAP PF14938.1 gi|219851500|ref|YP_002465932.1| - 0.00014 21.1 19.4 0.013 14.6 0.3 4.4 1 1 4 5 5 5 3 Soluble NSF attachment protein, SNAP TPR_2 PF07719.12 gi|219851500|ref|YP_002465932.1| - 0.0026 17.5 12.6 0.15 12.0 0.0 7.4 11 0 0 11 11 11 1 Tetratricopeptide repeat SRP19 PF01922.12 gi|219851500|ref|YP_002465932.1| - 0.097 13.2 2.4 10 6.7 0.0 3.7 2 2 2 4 4 4 0 SRP19 protein TPR_8 PF13181.1 gi|219851500|ref|YP_002465932.1| - 0.38 10.6 14.1 1 9.2 0.1 6.6 7 1 0 7 7 7 0 Tetratricopeptide repeat MatE PF01554.13 gi|219851501|ref|YP_002465933.1| - 1.2e-24 86.7 15.3 1.6e-24 86.4 10.6 1.2 1 0 0 1 1 1 1 MatE Sec62 PF03839.11 gi|219851501|ref|YP_002465933.1| - 2 7.7 6.5 3.5 6.9 4.5 1.4 1 0 0 1 1 1 0 Translocation protein Sec62 Transcrip_act PF04949.8 gi|219851502|ref|YP_002465934.1| - 0.044 13.4 0.1 0.046 13.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional activator DUF4398 PF14346.1 gi|219851503|ref|YP_002465935.1| - 1.8 8.6 7.1 0.53 10.3 0.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) Acetyltransf_1 PF00583.19 gi|219851505|ref|YP_002465937.1| - 4e-08 33.1 0.0 1e-07 31.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|219851505|ref|YP_002465937.1| - 3e-07 30.4 0.0 5.4e-07 29.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|219851505|ref|YP_002465937.1| - 6.7e-05 22.9 0.0 9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|219851505|ref|YP_002465937.1| - 7.3e-05 22.6 0.0 9.7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|219851505|ref|YP_002465937.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TetR_N PF00440.18 gi|219851506|ref|YP_002465938.1| - 6.9e-19 67.2 0.1 1.1e-18 66.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.1 gi|219851506|ref|YP_002465938.1| - 0.0017 17.8 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|219851506|ref|YP_002465938.1| - 0.0099 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|219851506|ref|YP_002465938.1| - 0.028 14.2 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|219851506|ref|YP_002465938.1| - 0.046 13.1 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|219851506|ref|YP_002465938.1| - 0.048 13.0 0.0 0.089 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|219851506|ref|YP_002465938.1| - 0.077 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FMN_red PF03358.10 gi|219851508|ref|YP_002465940.1| - 4.8e-27 94.3 0.0 6.6e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851508|ref|YP_002465940.1| - 2.2e-18 66.4 0.0 3.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|219851508|ref|YP_002465940.1| - 0.079 12.9 0.0 0.22 11.5 0.0 1.8 3 0 0 3 3 3 0 Flavodoxin domain TspO_MBR PF03073.10 gi|219851509|ref|YP_002465941.1| - 0.002 17.6 0.8 0.0022 17.5 0.6 1.1 1 0 0 1 1 1 1 TspO/MBR family Kelch_4 PF13418.1 gi|219851510|ref|YP_002465942.1| - 4.5e-44 147.9 28.6 8.8e-09 35.0 0.8 6.5 6 0 0 6 6 6 6 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|219851510|ref|YP_002465942.1| - 3e-27 93.6 4.5 0.0062 16.6 0.0 6.5 6 0 0 6 6 6 6 Kelch motif Kelch_5 PF13854.1 gi|219851510|ref|YP_002465942.1| - 3.2e-23 81.2 0.8 0.0038 17.1 0.0 6.4 6 0 0 6 6 6 5 Kelch motif Kelch_3 PF13415.1 gi|219851510|ref|YP_002465942.1| - 4.6e-22 77.5 38.3 2.7e-06 27.3 1.3 6.9 7 0 0 7 7 7 6 Galactose oxidase, central domain Kelch_1 PF01344.20 gi|219851510|ref|YP_002465942.1| - 3.7e-21 74.3 0.0 0.0054 16.2 0.0 6.5 6 0 0 6 6 6 6 Kelch motif Kelch_2 PF07646.10 gi|219851510|ref|YP_002465942.1| - 4.4e-21 73.7 12.9 0.0054 16.4 0.1 6.8 6 0 0 6 6 6 6 Kelch motif Glyoxal_oxid_N PF07250.6 gi|219851510|ref|YP_002465942.1| - 2e-15 56.5 5.7 0.00026 20.1 0.0 4.3 1 1 4 5 5 5 4 Glyoxal oxidase N-terminus BNR PF02012.15 gi|219851510|ref|YP_002465942.1| - 4.5e-11 40.8 31.5 0.074 12.9 1.3 6.2 5 0 0 5 5 5 5 BNR/Asp-box repeat BNR_2 PF13088.1 gi|219851510|ref|YP_002465942.1| - 3.6e-10 39.6 18.2 1.1e-07 31.4 9.5 2.6 1 1 1 2 2 2 2 BNR repeat-like domain PKD PF00801.15 gi|219851510|ref|YP_002465942.1| - 4.9e-10 39.0 8.8 3e-05 23.6 0.2 2.9 2 0 0 2 2 2 2 PKD domain Secretin PF00263.16 gi|219851510|ref|YP_002465942.1| - 1.9e-07 30.6 0.0 4.3 6.7 0.0 5.0 4 1 1 5 5 5 3 Bacterial type II and III secretion system protein EF-hand_6 PF13405.1 gi|219851510|ref|YP_002465942.1| - 0.00094 18.8 0.7 0.061 13.2 0.1 2.6 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.27 gi|219851510|ref|YP_002465942.1| - 0.011 14.9 9.5 0.034 13.4 0.1 2.8 3 0 0 3 3 2 0 EF hand Nuc_N PF14448.1 gi|219851510|ref|YP_002465942.1| - 0.029 13.9 3.6 51 3.5 0.0 5.2 6 0 0 6 6 6 0 Nuclease N terminal EF-hand_8 PF13833.1 gi|219851510|ref|YP_002465942.1| - 0.049 13.2 4.2 0.3 10.7 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.1 gi|219851510|ref|YP_002465942.1| - 0.39 10.8 2.6 4.6 7.4 1.7 2.3 1 1 0 1 1 1 0 EF-hand domain pair ERbeta_N PF12497.3 gi|219851510|ref|YP_002465942.1| - 6.6 6.6 7.8 0.89 9.4 0.5 2.8 3 0 0 3 3 3 0 Estrogen receptor beta 5_nucleotid_C PF02872.13 gi|219851511|ref|YP_002465943.1| - 9.8e-43 145.8 0.4 6.7e-42 143.1 0.1 2.2 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|219851511|ref|YP_002465943.1| - 6e-08 32.3 0.0 2.4e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Phage_integrase PF00589.17 gi|219851512|ref|YP_002465944.1| - 3.6e-09 36.5 0.1 8e-09 35.4 0.1 1.6 1 1 0 1 1 1 1 Phage integrase family TBP PF00352.16 gi|219851515|ref|YP_002465947.1| - 4.5e-58 192.5 0.1 2.2e-28 97.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|219851515|ref|YP_002465947.1| - 6.3e-08 32.5 0.0 0.00015 21.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|219851515|ref|YP_002465947.1| - 0.0028 17.0 0.0 0.5 9.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) DUF4007 PF13182.1 gi|219851515|ref|YP_002465947.1| - 0.088 11.6 0.0 0.75 8.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4007) Glyoxalase_2 PF12681.2 gi|219851516|ref|YP_002465948.1| - 1.5e-07 31.9 0.0 2.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|219851516|ref|YP_002465948.1| - 4.9e-05 23.3 0.0 8e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Beta-lactamase PF00144.19 gi|219851518|ref|YP_002465950.1| - 4.1e-65 219.9 0.1 8.8e-65 218.8 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase Pentapeptide_4 PF13599.1 gi|219851519|ref|YP_002465951.1| - 1.6e-26 91.8 11.6 2.5e-11 43.1 0.4 3.6 2 1 1 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|219851519|ref|YP_002465951.1| - 2.3e-23 80.9 10.5 4.1e-08 32.2 1.7 5.8 4 2 1 6 6 6 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|219851519|ref|YP_002465951.1| - 4.4e-19 68.1 12.7 5.1e-06 26.2 0.1 4.8 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) MazG-like PF12643.2 gi|219851519|ref|YP_002465951.1| - 0.11 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 MazG-like family PadR PF03551.9 gi|219851520|ref|YP_002465952.1| - 3.5e-20 71.5 0.5 4.3e-20 71.2 0.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Lysozyme_like PF13702.1 gi|219851520|ref|YP_002465952.1| - 0.12 11.8 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Lysozyme-like DUF996 PF06195.8 gi|219851521|ref|YP_002465953.1| - 0.061 13.3 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF996) ATG22 PF11700.3 gi|219851521|ref|YP_002465953.1| - 0.088 11.2 0.0 0.088 11.2 0.0 1.1 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like TetR_N PF00440.18 gi|219851522|ref|YP_002465954.1| - 7e-11 41.5 0.4 3.6e-10 39.3 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family MFS_1 PF07690.11 gi|219851523|ref|YP_002465955.1| - 2.8e-60 203.8 68.3 6.6e-53 179.6 31.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|219851523|ref|YP_002465955.1| - 1.3e-11 43.4 30.0 4e-09 35.2 13.5 2.2 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.19 gi|219851523|ref|YP_002465955.1| - 1.8e-08 33.4 33.2 5.6e-08 31.7 11.7 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|219851523|ref|YP_002465955.1| - 4.1e-08 32.0 33.0 0.018 13.4 15.8 4.7 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|219851523|ref|YP_002465955.1| - 2.1e-06 26.1 26.1 0.0002 19.6 8.4 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector 5_nucleotid_C PF02872.13 gi|219851524|ref|YP_002465956.1| - 5.9e-41 140.0 0.5 4.7e-40 137.1 0.1 2.3 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|219851524|ref|YP_002465956.1| - 4.7e-05 22.8 0.0 0.0001 21.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PAS_9 PF13426.1 gi|219851526|ref|YP_002465958.1| - 5.4e-49 164.8 0.3 7.3e-18 64.8 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|219851526|ref|YP_002465958.1| - 4.1e-37 126.4 0.0 1.8e-12 47.0 0.0 4.5 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|219851526|ref|YP_002465958.1| - 2.5e-33 114.3 0.0 1.6e-11 44.2 0.0 4.7 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|219851526|ref|YP_002465958.1| - 1.5e-24 84.9 0.0 5e-06 26.1 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|219851526|ref|YP_002465958.1| - 4.8e-17 61.6 0.1 1.4e-16 60.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219851526|ref|YP_002465958.1| - 2.9e-09 36.8 0.0 0.00072 19.6 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|219851526|ref|YP_002465958.1| - 0.00068 19.8 0.0 0.0039 17.4 0.0 2.3 2 0 0 2 2 2 1 PAS domain SPOB_a PF14689.1 gi|219851526|ref|YP_002465958.1| - 0.0019 17.7 0.4 0.004 16.6 0.3 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_11 PF14598.1 gi|219851526|ref|YP_002465958.1| - 0.006 16.5 0.0 1.9 8.5 0.0 2.9 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|219851526|ref|YP_002465958.1| - 0.0071 16.3 0.9 1.4 8.9 0.0 4.2 5 1 0 5 5 5 1 PAS fold HATPase_c_3 PF13589.1 gi|219851526|ref|YP_002465958.1| - 0.065 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RibD_C PF01872.12 gi|219851527|ref|YP_002465959.1| - 6e-19 68.4 0.2 6e-17 61.9 0.1 2.0 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.14 gi|219851527|ref|YP_002465959.1| - 2e-06 27.4 0.0 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Glyoxalase_2 PF12681.2 gi|219851529|ref|YP_002465961.1| - 1.5e-14 54.4 0.0 1.8e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|219851529|ref|YP_002465961.1| - 0.0018 18.2 0.0 0.0029 17.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|219851529|ref|YP_002465961.1| - 0.073 13.0 0.0 5.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Peptidase_S9 PF00326.16 gi|219851530|ref|YP_002465962.1| - 6.2e-59 198.7 0.1 1.2e-58 197.8 0.1 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|219851530|ref|YP_002465962.1| - 6.1e-20 70.4 4.6 2.6e-07 30.1 0.1 6.3 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.2 gi|219851530|ref|YP_002465962.1| - 3e-13 50.1 1.3 4.6e-13 49.5 0.2 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219851530|ref|YP_002465962.1| - 1.1e-12 47.8 0.0 2.1e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|219851530|ref|YP_002465962.1| - 6.4e-08 32.3 0.3 1.8e-05 24.3 0.2 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|219851530|ref|YP_002465962.1| - 1.5e-05 24.5 0.3 3.8e-05 23.2 0.2 1.6 1 1 0 1 1 1 1 Putative esterase DPPIV_N PF00930.16 gi|219851530|ref|YP_002465962.1| - 2.5e-05 23.0 0.0 0.29 9.6 0.0 4.1 3 2 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region SGL PF08450.7 gi|219851530|ref|YP_002465962.1| - 0.00015 21.2 0.1 0.14 11.5 0.0 2.7 2 1 1 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region Abhydrolase_1 PF00561.15 gi|219851530|ref|YP_002465962.1| - 0.0031 17.0 0.0 0.042 13.3 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|219851530|ref|YP_002465962.1| - 0.0087 14.5 0.1 0.54 8.6 0.1 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Lactonase PF10282.4 gi|219851530|ref|YP_002465962.1| - 0.027 13.5 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Metallophos PF00149.23 gi|219851531|ref|YP_002465963.1| - 4.5e-08 32.7 0.8 3.6e-07 29.7 0.5 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|219851531|ref|YP_002465963.1| - 8.4e-05 22.4 0.0 0.0002 21.2 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Serpin PF00079.15 gi|219851532|ref|YP_002465964.1| - 1.1e-118 396.6 0.0 1.3e-118 396.4 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Arch_flagellin PF01917.11 gi|219851533|ref|YP_002465965.1| - 3.6e-19 69.1 3.9 8.1e-19 67.9 2.7 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin Plasmid_stabil PF05016.9 gi|219851537|ref|YP_002465969.1| - 8.2e-06 26.1 0.4 1e-05 25.8 0.2 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein PhdYeFM_antitox PF02604.14 gi|219851538|ref|YP_002465970.1| - 0.0023 17.4 0.1 0.0079 15.7 0.1 1.8 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Scm3 PF10384.4 gi|219851538|ref|YP_002465970.1| - 0.028 13.8 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Centromere protein Scm3 RelB_N PF12910.2 gi|219851538|ref|YP_002465970.1| - 0.078 12.3 0.0 8.5 5.8 0.0 2.2 2 0 0 2 2 2 0 Antitoxin of toxin-antitoxin stability system N-terminal NosD PF05048.8 gi|219851541|ref|YP_002465973.1| - 9.1e-36 123.1 12.5 1.4e-34 119.3 8.6 2.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219851541|ref|YP_002465973.1| - 3.9e-14 52.6 18.5 7.3e-10 38.8 7.2 2.4 1 1 1 2 2 2 2 Right handed beta helix region EF-hand_1 PF00036.27 gi|219851541|ref|YP_002465973.1| - 2.7e-05 23.1 9.7 0.09 12.1 0.0 4.2 4 0 0 4 4 4 3 EF hand EF-hand_6 PF13405.1 gi|219851541|ref|YP_002465973.1| - 0.00073 19.2 7.3 0.34 10.9 0.0 4.0 4 0 0 4 4 4 2 EF-hand domain EF-hand_7 PF13499.1 gi|219851541|ref|YP_002465973.1| - 0.18 11.9 0.3 0.18 11.9 0.2 2.9 3 1 0 3 3 3 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219851541|ref|YP_002465973.1| - 5.6 6.4 17.4 0.14 11.5 0.3 4.1 4 0 0 4 4 4 0 EF hand Cas_APE2256 PF09651.5 gi|219851543|ref|YP_002465975.1| - 6e-05 22.7 0.7 0.00049 19.8 0.1 2.2 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) DUF1887 PF09002.6 gi|219851543|ref|YP_002465975.1| - 0.0014 17.0 0.3 0.0025 16.2 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.5 gi|219851543|ref|YP_002465975.1| - 0.0093 14.6 0.1 0.017 13.7 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF3116 PF11313.3 gi|219851543|ref|YP_002465975.1| - 0.014 14.9 1.0 0.039 13.5 0.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) Penicillinase_R PF03965.11 gi|219851543|ref|YP_002465975.1| - 0.022 14.8 0.3 0.072 13.1 0.1 2.1 2 1 0 2 2 2 0 Penicillinase repressor TrmB PF01978.14 gi|219851543|ref|YP_002465975.1| - 0.032 13.9 0.1 0.1 12.2 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|219851543|ref|YP_002465975.1| - 0.045 13.5 0.0 0.15 11.8 0.0 2.0 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GED PF02212.13 gi|219851543|ref|YP_002465975.1| - 0.74 9.7 4.0 0.25 11.2 0.6 1.8 2 0 0 2 2 2 0 Dynamin GTPase effector domain NTP_transf_2 PF01909.18 gi|219851544|ref|YP_002465976.1| - 0.00022 21.4 0.0 0.00044 20.5 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Methylase_S PF01420.14 gi|219851546|ref|YP_002465978.1| - 3.7e-19 69.3 0.0 2e-09 37.6 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|219851547|ref|YP_002465979.1| - 1.3e-59 201.8 0.0 1.7e-59 201.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|219851547|ref|YP_002465979.1| - 5.2e-14 52.2 0.0 9.2e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HsdM_N PF12161.3 gi|219851547|ref|YP_002465979.1| - 1.5e-11 44.8 0.0 2e-09 37.9 0.0 2.4 1 1 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|219851547|ref|YP_002465979.1| - 8.6e-07 28.6 0.0 1.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|219851547|ref|YP_002465979.1| - 0.0012 18.2 0.0 0.0025 17.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.6 gi|219851547|ref|YP_002465979.1| - 0.0045 17.3 0.0 0.0086 16.4 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|219851547|ref|YP_002465979.1| - 0.014 14.9 0.0 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain DUF585 PF04522.7 gi|219851547|ref|YP_002465979.1| - 0.023 14.1 0.0 3 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF585) Isochorismatase PF00857.15 gi|219851550|ref|YP_002465982.1| - 3.7e-16 59.5 0.0 6.3e-16 58.7 0.0 1.3 1 1 0 1 1 1 1 Isochorismatase family PKD PF00801.15 gi|219851552|ref|YP_002465984.1| - 1.9e-39 133.2 56.6 8.4e-18 63.8 1.6 6.6 7 1 0 7 7 7 4 PKD domain CBM_6 PF03422.10 gi|219851552|ref|YP_002465984.1| - 2e-26 92.5 3.6 2e-26 92.5 2.5 6.3 4 3 0 5 5 5 1 Carbohydrate binding module (family 6) DUF4480 PF13715.1 gi|219851552|ref|YP_002465984.1| - 2.3e-08 33.9 14.3 0.004 17.1 0.1 5.5 5 2 1 6 6 6 3 Domain of unknown function (DUF4480) DUF1918 PF08940.6 gi|219851552|ref|YP_002465984.1| - 0.016 14.5 0.0 2 7.8 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) Pollen_Ole_e_I PF01190.12 gi|219851552|ref|YP_002465984.1| - 0.017 14.9 0.6 2.2 8.1 0.0 3.6 4 0 0 4 4 4 0 Pollen proteins Ole e I like ThiC-associated PF13667.1 gi|219851552|ref|YP_002465984.1| - 0.72 9.4 3.1 3.1 7.4 0.0 3.5 3 0 0 3 3 3 0 ThiC-associated domain PAS_9 PF13426.1 gi|219851553|ref|YP_002465985.1| - 4.6e-71 235.8 2.2 1.2e-14 54.4 0.0 6.6 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|219851553|ref|YP_002465985.1| - 3.1e-67 223.5 5.8 3.7e-13 49.4 0.0 6.4 6 0 0 6 6 6 6 PAS fold PAS PF00989.19 gi|219851553|ref|YP_002465985.1| - 5.3e-49 164.7 2.2 2.7e-11 43.2 0.0 6.8 6 0 0 6 6 6 5 PAS fold PAS_8 PF13188.1 gi|219851553|ref|YP_002465985.1| - 2e-31 106.7 0.5 1.2e-06 28.1 0.0 7.1 6 0 0 6 6 6 6 PAS domain HATPase_c PF02518.21 gi|219851553|ref|YP_002465985.1| - 2.3e-27 94.9 0.0 5.4e-27 93.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219851553|ref|YP_002465985.1| - 8e-24 83.5 0.5 5.1e-08 32.8 0.0 5.9 6 0 0 6 6 5 4 PAS fold PAS_10 PF13596.1 gi|219851553|ref|YP_002465985.1| - 1.7e-20 73.2 0.0 0.00038 20.6 0.0 5.7 5 1 1 6 6 5 4 PAS domain HisKA PF00512.20 gi|219851553|ref|YP_002465985.1| - 3.1e-11 43.1 0.0 3.1e-11 43.1 0.0 4.0 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|219851553|ref|YP_002465985.1| - 3.1e-09 37.4 0.0 2.3e-08 34.6 0.0 2.5 2 0 0 2 2 1 1 GAF domain GAF_3 PF13492.1 gi|219851553|ref|YP_002465985.1| - 7.2e-09 35.8 0.0 2.3e-08 34.2 0.0 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|219851553|ref|YP_002465985.1| - 2.5e-06 27.1 0.0 6.4e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 GHKL domain GAF PF01590.21 gi|219851553|ref|YP_002465985.1| - 0.00013 22.1 0.0 0.00042 20.4 0.0 2.0 1 1 0 1 1 1 1 GAF domain V_ATPase_I PF01496.14 gi|219851553|ref|YP_002465985.1| - 0.0012 16.7 1.5 0.088 10.6 0.2 2.3 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family EzrA PF06160.7 gi|219851553|ref|YP_002465985.1| - 0.01 14.0 8.1 0.36 8.9 0.4 2.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA AAA_23 PF13476.1 gi|219851553|ref|YP_002465985.1| - 0.055 13.7 7.7 2.2 8.5 0.2 4.1 3 1 0 3 3 3 0 AAA domain zf-C4H2 PF10146.4 gi|219851553|ref|YP_002465985.1| - 0.072 13.0 10.3 0.11 12.5 1.8 2.8 2 0 0 2 2 2 0 Zinc finger-containing protein Snapin_Pallidin PF14712.1 gi|219851553|ref|YP_002465985.1| - 0.26 11.6 11.4 3.9 7.8 0.8 3.1 2 0 0 2 2 2 0 Snapin/Pallidin Med4 PF10018.4 gi|219851553|ref|YP_002465985.1| - 0.56 9.5 8.6 0.73 9.2 0.1 3.4 3 0 0 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 COG2 PF06148.6 gi|219851553|ref|YP_002465985.1| - 1.9 8.3 9.7 2.2 8.1 0.8 3.2 3 0 0 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF972 PF06156.8 gi|219851553|ref|YP_002465985.1| - 2.8 8.3 17.6 1.5 9.2 0.3 4.7 6 0 0 6 6 4 0 Protein of unknown function (DUF972) UPF0449 PF15136.1 gi|219851553|ref|YP_002465985.1| - 3.5 7.8 14.0 7.9 6.7 0.7 4.3 3 1 1 4 4 4 0 Uncharacterised protein family UPF0449 DUF2203 PF09969.4 gi|219851553|ref|YP_002465985.1| - 9 6.5 8.3 14 5.9 0.6 3.5 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2203) SlyX PF04102.7 gi|219851553|ref|YP_002465985.1| - 9.8 6.6 12.6 18 5.8 2.8 3.0 2 0 0 2 2 2 0 SlyX DUF927 PF06048.6 gi|219851554|ref|YP_002465986.1| - 0.0041 16.4 0.3 0.0049 16.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF927) HATPase_c_4 PF13749.1 gi|219851556|ref|YP_002465988.1| - 1.6e-21 75.8 0.0 3.5e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal DUF4062 PF13271.1 gi|219851556|ref|YP_002465988.1| - 8.8e-20 70.5 0.0 2.2e-19 69.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) HTH_11 PF08279.7 gi|219851556|ref|YP_002465988.1| - 0.0016 18.0 0.2 0.0043 16.6 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|219851556|ref|YP_002465988.1| - 0.014 14.8 0.5 0.038 13.5 0.1 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|219851556|ref|YP_002465988.1| - 0.048 13.9 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain zf-C3HC PF07967.8 gi|219851557|ref|YP_002465989.1| - 0.0042 16.8 0.1 0.0042 16.8 0.0 1.2 1 0 0 1 1 1 1 C3HC zinc finger-like YcfA PF07927.7 gi|219851557|ref|YP_002465989.1| - 0.013 15.3 0.2 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 YcfA-like protein YafO_toxin PF13957.1 gi|219851557|ref|YP_002465989.1| - 0.022 14.5 0.1 0.028 14.2 0.1 1.1 1 0 0 1 1 1 0 Toxin YafO, type II toxin-antitoxin system DUF3189 PF11385.3 gi|219851557|ref|YP_002465989.1| - 0.11 12.1 0.1 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3189) DUF1828 PF08861.5 gi|219851561|ref|YP_002465993.1| - 9.7e-28 95.6 0.1 2.6e-27 94.2 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF1828 SHOCT PF09851.4 gi|219851564|ref|YP_002465996.1| - 0.048 13.1 0.4 0.08 12.4 0.3 1.4 1 0 0 1 1 1 0 Short C-terminal domain AAA PF00004.24 gi|219851565|ref|YP_002465997.1| - 9.1e-07 29.1 0.3 5.8e-06 26.5 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|219851565|ref|YP_002465997.1| - 0.00026 21.1 0.0 0.0028 17.8 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851565|ref|YP_002465997.1| - 0.00044 20.2 0.0 0.0018 18.2 0.0 2.0 2 1 1 3 3 3 1 AAA ATPase domain KAP_NTPase PF07693.9 gi|219851565|ref|YP_002465997.1| - 0.00069 18.7 0.3 0.0017 17.4 0.0 1.8 2 0 0 2 2 2 1 KAP family P-loop domain AAA_14 PF13173.1 gi|219851565|ref|YP_002465997.1| - 0.0022 17.8 5.5 0.0034 17.2 0.0 3.9 3 1 1 4 4 4 1 AAA domain Torsin PF06309.6 gi|219851565|ref|YP_002465997.1| - 0.014 15.2 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Torsin AAA_17 PF13207.1 gi|219851565|ref|YP_002465997.1| - 0.03 15.1 0.1 0.26 12.1 0.0 2.9 2 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|219851565|ref|YP_002465997.1| - 0.047 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|219851565|ref|YP_002465997.1| - 0.05 12.6 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|219851565|ref|YP_002465997.1| - 0.053 13.2 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|219851565|ref|YP_002465997.1| - 0.21 11.4 0.0 0.43 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FCD PF07729.7 gi|219851566|ref|YP_002465998.1| - 7.1e-21 74.8 2.5 1e-20 74.3 0.9 1.8 2 0 0 2 2 2 1 FCD domain GntR PF00392.16 gi|219851566|ref|YP_002465998.1| - 7.6e-21 73.3 1.4 2.5e-20 71.6 0.2 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Oscp1 PF10188.4 gi|219851566|ref|YP_002465998.1| - 0.015 15.0 0.9 0.029 14.1 0.4 1.6 2 0 0 2 2 2 0 Organic solute transport protein 1 Rrf2 PF02082.15 gi|219851566|ref|YP_002465998.1| - 0.025 14.7 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Cullin_Nedd8 PF10557.4 gi|219851566|ref|YP_002465998.1| - 0.037 13.8 0.1 8 6.3 0.0 3.4 3 0 0 3 3 3 0 Cullin protein neddylation domain HTH_DeoR PF08220.7 gi|219851566|ref|YP_002465998.1| - 0.044 13.3 0.0 0.14 11.6 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|219851566|ref|YP_002465998.1| - 0.049 13.4 0.1 0.15 11.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|219851566|ref|YP_002465998.1| - 0.053 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DASH_Duo1 PF08651.5 gi|219851566|ref|YP_002465998.1| - 0.065 12.8 0.9 0.25 10.9 0.2 2.3 2 0 0 2 2 2 0 DASH complex subunit Duo1 HTH_11 PF08279.7 gi|219851566|ref|YP_002465998.1| - 0.083 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|219851566|ref|YP_002465998.1| - 0.085 12.9 0.0 0.47 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|219851566|ref|YP_002465998.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GTPase_Cys_C PF12631.2 gi|219851566|ref|YP_002465998.1| - 0.62 10.5 3.6 13 6.2 0.5 3.4 2 1 1 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE MFS_1 PF07690.11 gi|219851567|ref|YP_002465999.1| - 5.9e-31 107.4 37.9 5.9e-31 107.4 26.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily N6_N4_Mtase PF01555.13 gi|219851568|ref|YP_002466000.1| - 4.3e-28 98.3 0.0 5.7e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|219851568|ref|YP_002466000.1| - 4e-07 30.0 0.0 7.9e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851568|ref|YP_002466000.1| - 0.0039 16.8 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|219851568|ref|YP_002466000.1| - 0.0042 16.4 0.0 0.0081 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|219851568|ref|YP_002466000.1| - 0.0059 16.1 0.0 0.013 15.0 0.0 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_Mtase PF02384.11 gi|219851568|ref|YP_002466000.1| - 0.016 14.3 0.0 0.9 8.5 0.0 2.1 2 0 0 2 2 2 0 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|219851568|ref|YP_002466000.1| - 0.16 12.5 0.0 1.6 9.2 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain DUF4349 PF14257.1 gi|219851569|ref|YP_002466001.1| - 8.2e-66 221.9 3.5 8.2e-66 221.9 2.4 1.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4349) IL11 PF07400.6 gi|219851569|ref|YP_002466001.1| - 0.025 14.1 0.0 0.39 10.2 0.0 2.1 2 0 0 2 2 2 0 Interleukin 11 Sec8_exocyst PF04048.9 gi|219851569|ref|YP_002466001.1| - 0.047 13.3 0.4 0.074 12.6 0.3 1.3 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain Chordopox_A13L PF05961.6 gi|219851569|ref|YP_002466001.1| - 0.28 11.1 1.6 43 4.1 0.0 3.2 3 0 0 3 3 3 0 Chordopoxvirus A13L protein Tad PF13400.1 gi|219851569|ref|YP_002466001.1| - 1 9.4 4.2 5.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like FlxA PF14282.1 gi|219851569|ref|YP_002466001.1| - 1.9 8.4 7.6 0.084 12.8 1.3 1.6 2 0 0 2 2 2 0 FlxA-like protein HI0933_like PF03486.9 gi|219851570|ref|YP_002466002.1| - 1.6e-124 415.4 0.0 1.9e-124 415.2 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|219851570|ref|YP_002466002.1| - 2.3e-13 49.7 5.9 3.8e-08 32.6 0.1 2.8 1 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|219851570|ref|YP_002466002.1| - 4.3e-12 46.5 0.2 3.7e-11 43.4 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|219851570|ref|YP_002466002.1| - 4.7e-11 42.9 0.0 8.7e-11 42.0 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|219851570|ref|YP_002466002.1| - 7.5e-09 35.1 0.1 1.2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|219851570|ref|YP_002466002.1| - 6.8e-07 28.4 6.2 3.1e-05 23.0 1.0 3.0 1 1 1 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|219851570|ref|YP_002466002.1| - 2.4e-06 26.7 4.0 0.0036 16.2 0.0 2.8 2 1 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|219851570|ref|YP_002466002.1| - 0.00015 21.7 2.2 0.0004 20.3 0.6 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|219851570|ref|YP_002466002.1| - 0.00018 21.8 0.9 0.37 11.2 0.0 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|219851570|ref|YP_002466002.1| - 0.0013 18.4 0.2 0.0053 16.5 0.2 2.0 1 1 0 1 1 1 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|219851570|ref|YP_002466002.1| - 0.006 15.6 1.6 0.014 14.4 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|219851570|ref|YP_002466002.1| - 0.012 14.7 0.2 0.021 13.8 0.2 1.4 1 0 0 1 1 1 0 Thi4 family Amino_oxidase PF01593.19 gi|219851570|ref|YP_002466002.1| - 0.03 13.3 0.1 0.071 12.1 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|219851572|ref|YP_002466004.1| - 3.4e-40 137.4 0.1 2.6e-30 105.1 0.0 2.4 1 1 1 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|219851572|ref|YP_002466004.1| - 5.6e-26 90.5 0.0 1.1e-25 89.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|219851572|ref|YP_002466004.1| - 1.2e-21 76.8 0.1 1e-20 73.8 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|219851572|ref|YP_002466004.1| - 7.4e-08 32.4 0.0 9.6e-07 28.7 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|219851572|ref|YP_002466004.1| - 1e-06 28.0 0.1 0.0012 18.0 0.0 2.7 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|219851572|ref|YP_002466004.1| - 3.7e-05 23.6 0.3 0.012 15.6 0.0 3.3 3 0 0 3 3 3 1 TrkA-N domain F420_oxidored PF03807.12 gi|219851572|ref|YP_002466004.1| - 5.3e-05 23.5 0.1 0.00052 20.3 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|219851572|ref|YP_002466004.1| - 0.00014 21.6 0.0 0.0053 16.5 0.0 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.19 gi|219851572|ref|YP_002466004.1| - 0.013 14.5 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase PDH PF02153.12 gi|219851572|ref|YP_002466004.1| - 0.014 14.2 0.4 0.39 9.5 0.0 2.2 2 0 0 2 2 2 0 Prephenate dehydrogenase NAD_binding_7 PF13241.1 gi|219851572|ref|YP_002466004.1| - 0.021 15.0 0.0 0.074 13.3 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Semialdhyde_dh PF01118.19 gi|219851572|ref|YP_002466004.1| - 0.061 13.6 0.0 0.29 11.4 0.0 2.2 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.7 gi|219851572|ref|YP_002466004.1| - 0.074 12.4 0.0 0.17 11.2 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Nup35_RRM PF05172.8 gi|219851572|ref|YP_002466004.1| - 0.09 12.5 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif Transglut_core PF01841.14 gi|219851573|ref|YP_002466005.1| - 6.8e-06 26.2 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily zf-ribbon_3 PF13248.1 gi|219851573|ref|YP_002466005.1| - 0.0012 18.0 1.8 0.0025 16.9 1.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219851573|ref|YP_002466005.1| - 0.0061 16.3 0.4 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|219851573|ref|YP_002466005.1| - 0.0084 15.5 2.5 0.02 14.3 1.8 1.7 1 0 0 1 1 1 1 zinc-ribbon domain RskA PF10099.4 gi|219851573|ref|YP_002466005.1| - 0.068 12.9 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Transglut_core2 PF13369.1 gi|219851573|ref|YP_002466005.1| - 0.074 12.5 0.1 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 Transglutaminase-like superfamily DNA_RNApol_7kD PF03604.8 gi|219851573|ref|YP_002466005.1| - 0.11 12.0 1.1 0.27 10.7 0.8 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PAS_9 PF13426.1 gi|219851575|ref|YP_002466007.1| - 4.6e-27 94.4 0.1 1.1e-11 44.9 0.0 4.3 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|219851575|ref|YP_002466007.1| - 1.8e-19 69.8 0.0 3.7e-19 68.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|219851575|ref|YP_002466007.1| - 6.3e-18 63.9 0.3 4.2e-06 26.4 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219851575|ref|YP_002466007.1| - 1.1e-16 60.5 0.1 2.4e-05 24.0 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|219851575|ref|YP_002466007.1| - 2.3e-15 56.5 0.0 2.3e-05 24.3 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|219851575|ref|YP_002466007.1| - 2.2e-14 53.0 0.0 4.6e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219851575|ref|YP_002466007.1| - 1.6e-09 37.7 0.0 1.2e-05 25.2 0.0 3.6 4 0 0 4 4 3 2 PAS fold HATPase_c_2 PF13581.1 gi|219851575|ref|YP_002466007.1| - 2.3e-05 24.1 0.0 5.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|219851575|ref|YP_002466007.1| - 0.00013 21.4 0.0 0.00031 20.2 0.0 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|219851575|ref|YP_002466007.1| - 0.00022 20.8 0.0 0.0005 19.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|219851575|ref|YP_002466007.1| - 0.0098 15.8 0.1 0.04 13.9 0.1 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|219851575|ref|YP_002466007.1| - 0.036 13.7 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CENP-F_leu_zip PF10473.4 gi|219851576|ref|YP_002466008.1| - 0.03 14.2 1.8 0.036 13.9 1.3 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF484 PF04340.7 gi|219851576|ref|YP_002466008.1| - 0.035 13.5 0.6 0.045 13.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF484 WEMBL PF05701.6 gi|219851576|ref|YP_002466008.1| - 0.057 11.8 0.1 0.061 11.7 0.1 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light DUF479 PF04336.7 gi|219851576|ref|YP_002466008.1| - 0.081 13.0 0.9 3.7 7.6 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF479 DUF746 PF05344.6 gi|219851576|ref|YP_002466008.1| - 0.11 11.9 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) MutL_C PF08676.6 gi|219851577|ref|YP_002466009.1| - 1.5e-35 121.9 0.0 2.7e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|219851577|ref|YP_002466009.1| - 2.3e-33 114.1 0.0 4.5e-33 113.2 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|219851577|ref|YP_002466009.1| - 6.2e-13 48.5 0.2 1.1e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|219851577|ref|YP_002466009.1| - 8.6e-10 38.3 0.2 2e-09 37.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|219851578|ref|YP_002466010.1| - 4.5e-93 310.9 0.1 6.9e-93 310.3 0.1 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|219851578|ref|YP_002466010.1| - 2.8e-44 151.3 0.3 6.7e-44 150.1 0.2 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|219851578|ref|YP_002466010.1| - 1.3e-42 144.3 0.0 4e-42 142.8 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|219851578|ref|YP_002466010.1| - 2.2e-27 95.0 0.1 4.1e-27 94.1 0.1 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|219851578|ref|YP_002466010.1| - 1.3e-23 83.5 0.0 3.2e-23 82.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II HEAT_2 PF13646.1 gi|219851578|ref|YP_002466010.1| - 0.017 15.3 0.1 0.017 15.3 0.0 2.9 4 0 0 4 4 4 0 HEAT repeats AAA_29 PF13555.1 gi|219851578|ref|YP_002466010.1| - 0.064 12.8 0.1 0.19 11.2 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|219851578|ref|YP_002466010.1| - 0.088 13.1 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_14 PF13173.1 gi|219851578|ref|YP_002466010.1| - 0.099 12.5 0.0 0.44 10.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain Lactamase_B PF00753.22 gi|219851579|ref|YP_002466011.1| - 2.9e-12 46.6 2.5 3.4e-11 43.1 1.7 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ACT PF01842.20 gi|219851579|ref|YP_002466011.1| - 4.3e-06 26.0 0.9 2.8e-05 23.5 0.0 2.9 3 1 0 3 3 3 1 ACT domain Lactamase_B_2 PF12706.2 gi|219851579|ref|YP_002466011.1| - 1.2e-05 24.8 0.0 2.8e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Thr_dehydrat_C PF00585.13 gi|219851579|ref|YP_002466011.1| - 0.013 15.1 0.0 2.4 7.8 0.0 2.5 2 0 0 2 2 2 0 C-terminal regulatory domain of Threonine dehydratase AAA PF00004.24 gi|219851580|ref|YP_002466012.1| - 4.2e-45 153.1 0.0 9.2e-45 152.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219851580|ref|YP_002466012.1| - 7.9e-08 32.5 0.1 1.1e-05 25.4 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|219851580|ref|YP_002466012.1| - 1.6e-07 31.1 0.6 7e-07 29.0 0.0 2.3 2 2 1 3 3 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|219851580|ref|YP_002466012.1| - 1.1e-06 28.7 0.4 0.00018 21.6 0.0 2.9 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|219851580|ref|YP_002466012.1| - 6.1e-06 25.4 0.0 1.1e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|219851580|ref|YP_002466012.1| - 7.7e-06 25.9 0.0 1.6e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|219851580|ref|YP_002466012.1| - 0.00011 21.9 0.1 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|219851580|ref|YP_002466012.1| - 0.00023 21.0 0.0 0.00061 19.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|219851580|ref|YP_002466012.1| - 0.00032 20.1 0.0 0.00059 19.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|219851580|ref|YP_002466012.1| - 0.00038 19.4 0.0 0.00067 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|219851580|ref|YP_002466012.1| - 0.00042 20.2 0.1 0.0018 18.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|219851580|ref|YP_002466012.1| - 0.00077 18.2 0.0 0.0014 17.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_17 PF13207.1 gi|219851580|ref|YP_002466012.1| - 0.00088 20.0 0.7 0.0023 18.7 0.1 2.0 2 1 0 2 2 1 1 AAA domain KaiC PF06745.8 gi|219851580|ref|YP_002466012.1| - 0.0012 18.0 1.7 0.23 10.5 0.0 3.2 2 1 1 3 3 3 1 KaiC AAA_25 PF13481.1 gi|219851580|ref|YP_002466012.1| - 0.0017 17.7 3.1 0.75 9.1 0.1 3.2 2 1 1 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.1 gi|219851580|ref|YP_002466012.1| - 0.0034 17.4 0.0 0.008 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_28 PF13521.1 gi|219851580|ref|YP_002466012.1| - 0.0037 17.2 1.2 0.0041 17.0 0.0 1.8 2 1 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|219851580|ref|YP_002466012.1| - 0.0046 16.5 0.0 0.0096 15.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|219851580|ref|YP_002466012.1| - 0.0056 16.9 0.3 0.025 14.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|219851580|ref|YP_002466012.1| - 0.0073 15.9 0.0 0.11 12.1 0.0 2.3 1 1 1 2 2 2 1 NACHT domain Sigma54_activat PF00158.21 gi|219851580|ref|YP_002466012.1| - 0.0076 15.7 0.1 0.074 12.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|219851580|ref|YP_002466012.1| - 0.01 14.9 0.4 0.023 13.8 0.0 1.7 2 0 0 2 2 1 0 Zeta toxin RNA_helicase PF00910.17 gi|219851580|ref|YP_002466012.1| - 0.013 15.6 0.0 0.049 13.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Filament PF00038.16 gi|219851580|ref|YP_002466012.1| - 0.016 14.6 0.9 0.016 14.6 0.6 1.8 3 0 0 3 3 2 0 Intermediate filament protein ApoO PF09769.4 gi|219851580|ref|YP_002466012.1| - 0.018 14.7 0.1 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Apolipoprotein O AAA_30 PF13604.1 gi|219851580|ref|YP_002466012.1| - 0.018 14.6 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|219851580|ref|YP_002466012.1| - 0.018 14.5 0.1 0.091 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|219851580|ref|YP_002466012.1| - 0.019 14.6 3.1 0.51 10.0 0.0 3.2 3 1 1 4 4 4 0 NTPase Mg_chelatase PF01078.16 gi|219851580|ref|YP_002466012.1| - 0.02 14.0 0.0 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|219851580|ref|YP_002466012.1| - 0.024 13.8 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.10 gi|219851580|ref|YP_002466012.1| - 0.029 14.2 0.2 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|219851580|ref|YP_002466012.1| - 0.037 12.8 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.4 gi|219851580|ref|YP_002466012.1| - 0.085 11.8 0.2 0.18 10.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) APG6 PF04111.7 gi|219851580|ref|YP_002466012.1| - 0.088 11.8 1.7 0.17 10.9 1.2 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 AFG1_ATPase PF03969.11 gi|219851580|ref|YP_002466012.1| - 0.088 11.5 0.0 0.24 10.1 0.0 1.7 2 0 0 2 2 2 0 AFG1-like ATPase Torsin PF06309.6 gi|219851580|ref|YP_002466012.1| - 0.091 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Torsin Nsp1_C PF05064.8 gi|219851580|ref|YP_002466012.1| - 0.11 12.1 2.0 0.14 11.7 0.5 1.8 2 0 0 2 2 2 0 Nsp1-like C-terminal region Troponin PF00992.15 gi|219851580|ref|YP_002466012.1| - 0.14 12.1 3.2 0.12 12.3 0.8 1.9 2 0 0 2 2 1 0 Troponin Tektin PF03148.9 gi|219851580|ref|YP_002466012.1| - 0.24 9.9 5.8 0.049 12.1 1.5 1.6 2 0 0 2 2 2 0 Tektin family DUF919 PF06034.6 gi|219851580|ref|YP_002466012.1| - 0.24 11.0 4.6 0.85 9.2 1.5 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Syntaxin-6_N PF09177.6 gi|219851580|ref|YP_002466012.1| - 0.24 11.8 1.7 24 5.3 0.0 3.0 3 0 0 3 3 2 0 Syntaxin 6, N-terminal HTH_3 PF01381.17 gi|219851581|ref|YP_002466013.1| - 4e-06 26.5 0.9 5.9e-06 26.0 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|219851581|ref|YP_002466013.1| - 4.9e-06 26.4 1.2 7.6e-06 25.8 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|219851581|ref|YP_002466013.1| - 2.4e-05 24.4 0.0 3.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|219851581|ref|YP_002466013.1| - 0.0041 16.7 0.4 0.0067 16.0 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PilM_2 PF11104.3 gi|219851581|ref|YP_002466013.1| - 0.039 12.8 0.1 0.049 12.5 0.1 1.1 1 0 0 1 1 1 0 Type IV pilus assembly protein PilM; DUF1654 PF07867.6 gi|219851582|ref|YP_002466014.1| - 0.015 14.6 0.9 12 5.3 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1654) Ferritin PF00210.19 gi|219851583|ref|YP_002466015.1| - 9.5e-38 129.1 4.3 1.1e-37 128.9 3.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DsbC PF11412.3 gi|219851583|ref|YP_002466015.1| - 0.02 14.6 0.1 0.031 14.1 0.0 1.4 1 1 0 1 1 1 0 Disulphide bond corrector protein DsbC Glycos_transf_1 PF00534.15 gi|219851584|ref|YP_002466016.1| - 6.5e-25 87.5 0.0 9.2e-25 87.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219851584|ref|YP_002466016.1| - 3.4e-17 62.8 0.0 7.5e-17 61.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219851584|ref|YP_002466016.1| - 6.1e-11 42.3 0.0 1e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|219851584|ref|YP_002466016.1| - 3e-10 40.2 0.0 7.1e-10 39.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219851584|ref|YP_002466016.1| - 0.0019 18.3 0.0 0.0047 17.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Amino_oxidase PF01593.19 gi|219851585|ref|YP_002466017.1| - 4.8e-21 75.3 0.0 5.4e-10 38.9 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|219851585|ref|YP_002466017.1| - 2.6e-14 52.9 0.3 6.3e-14 51.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|219851585|ref|YP_002466017.1| - 2.1e-08 33.4 0.7 3.9e-06 26.0 0.2 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|219851585|ref|YP_002466017.1| - 9.7e-06 25.7 0.1 0.087 12.8 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|219851585|ref|YP_002466017.1| - 0.00019 20.6 0.5 0.00029 20.0 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|219851585|ref|YP_002466017.1| - 0.00031 21.0 0.6 0.0015 18.9 0.5 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|219851585|ref|YP_002466017.1| - 0.00069 18.5 0.1 0.00099 18.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|219851585|ref|YP_002466017.1| - 0.014 15.1 0.1 0.033 13.9 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.2 gi|219851585|ref|YP_002466017.1| - 0.014 14.5 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|219851585|ref|YP_002466017.1| - 0.036 14.4 0.2 0.45 10.9 0.1 2.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|219851585|ref|YP_002466017.1| - 0.036 14.0 0.1 0.071 13.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Thi4 PF01946.12 gi|219851585|ref|YP_002466017.1| - 0.041 12.9 0.1 0.063 12.3 0.1 1.3 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.9 gi|219851585|ref|YP_002466017.1| - 0.042 12.3 0.1 0.18 10.2 0.2 1.7 2 0 0 2 2 2 0 HI0933-like protein GDI PF00996.13 gi|219851585|ref|YP_002466017.1| - 0.17 10.1 0.1 0.28 9.4 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor TPR_2 PF07719.12 gi|219851586|ref|YP_002466018.1| - 1.5e-30 102.5 10.4 3e-08 32.9 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219851586|ref|YP_002466018.1| - 5.6e-29 98.5 4.2 2.8e-08 33.0 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|219851586|ref|YP_002466018.1| - 6.5e-28 96.1 9.1 1.9e-13 49.8 0.3 3.1 1 1 1 3 3 3 3 TPR repeat TPR_8 PF13181.1 gi|219851586|ref|YP_002466018.1| - 1e-16 59.3 1.7 0.0019 17.8 0.0 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219851586|ref|YP_002466018.1| - 4.5e-16 59.0 9.9 2.4e-08 34.4 0.7 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219851586|ref|YP_002466018.1| - 7.3e-16 56.9 0.3 0.0061 16.6 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219851586|ref|YP_002466018.1| - 7.5e-16 57.8 18.6 2e-05 24.4 0.3 4.0 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219851586|ref|YP_002466018.1| - 5.1e-12 45.3 13.6 0.0037 17.7 0.2 4.6 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219851586|ref|YP_002466018.1| - 7.6e-11 42.1 4.1 0.00011 22.4 0.2 2.4 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219851586|ref|YP_002466018.1| - 5e-10 39.0 12.4 5.1e-05 23.0 0.6 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219851586|ref|YP_002466018.1| - 2.5e-09 36.9 4.6 0.046 14.1 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|219851586|ref|YP_002466018.1| - 1.9e-06 27.7 10.2 0.098 13.1 0.1 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|219851586|ref|YP_002466018.1| - 8.3e-05 22.6 0.1 0.0038 17.3 0.0 2.5 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|219851586|ref|YP_002466018.1| - 0.00016 21.4 0.9 3.9 7.2 0.0 3.6 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_7 PF13176.1 gi|219851586|ref|YP_002466018.1| - 0.00082 18.9 4.8 9.7 6.2 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_15 PF13429.1 gi|219851586|ref|YP_002466018.1| - 0.0041 16.2 0.6 0.046 12.7 0.0 1.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|219851586|ref|YP_002466018.1| - 0.0047 16.9 2.8 0.21 11.6 0.3 3.0 1 1 0 2 2 2 1 Tetratrico peptide repeat NARP1 PF12569.3 gi|219851586|ref|YP_002466018.1| - 0.01 14.6 0.0 0.39 9.4 0.0 2.0 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 Sel1 PF08238.7 gi|219851586|ref|YP_002466018.1| - 0.048 14.3 0.4 0.048 14.3 0.3 3.6 4 1 1 5 5 4 0 Sel1 repeat TPR_10 PF13374.1 gi|219851586|ref|YP_002466018.1| - 0.055 13.4 12.5 0.42 10.6 0.3 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|219851586|ref|YP_002466018.1| - 0.35 10.7 5.1 10 6.1 0.1 3.9 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_21 PF09976.4 gi|219851586|ref|YP_002466018.1| - 0.45 10.4 3.4 9.1 6.2 0.0 3.0 3 1 0 3 3 3 0 Tetratricopeptide repeat C1_1 PF00130.17 gi|219851587|ref|YP_002466019.1| - 0.0081 15.8 6.0 0.15 11.8 0.2 2.4 2 0 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) UPF0547 PF10571.4 gi|219851587|ref|YP_002466019.1| - 1.2 8.9 19.8 0.063 12.9 4.5 3.5 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Rad50_zn_hook PF04423.9 gi|219851587|ref|YP_002466019.1| - 2.3 7.7 10.1 0.32 10.4 2.5 2.4 2 1 0 2 2 2 0 Rad50 zinc hook motif DZR PF12773.2 gi|219851587|ref|YP_002466019.1| - 2.3 8.0 10.4 5.4 6.9 0.9 3.0 2 2 0 2 2 2 0 Double zinc ribbon tRNA-synt_2b PF00587.20 gi|219851588|ref|YP_002466020.1| - 6.4e-19 68.1 0.1 1.1e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|219851588|ref|YP_002466020.1| - 1.1e-17 63.6 0.0 2.5e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|219851588|ref|YP_002466020.1| - 5.4e-14 51.8 0.1 2.1e-13 49.9 0.1 2.0 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.1 gi|219851588|ref|YP_002466020.1| - 0.03 14.4 0.1 0.12 12.5 0.0 2.0 1 0 0 1 1 1 0 TIR domain DUF95 PF01944.12 gi|219851589|ref|YP_002466021.1| - 1.8e-36 125.3 13.6 2e-36 125.2 9.4 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF63 PF01889.12 gi|219851590|ref|YP_002466022.1| - 1.2e-89 301.0 21.5 1.3e-89 300.8 14.9 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Fe-ADH_2 PF13685.1 gi|219851591|ref|YP_002466023.1| - 4.9e-65 219.2 0.2 6e-65 219.0 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|219851591|ref|YP_002466023.1| - 7.2e-25 87.3 3.6 2e-24 85.9 2.5 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|219851591|ref|YP_002466023.1| - 5.4e-11 41.8 0.4 3.8e-10 39.1 0.2 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase UPF0179 PF03684.8 gi|219851592|ref|YP_002466024.1| - 2.9e-45 153.3 0.3 3.2e-45 153.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) ADP_ribosyl_GH PF03747.9 gi|219851593|ref|YP_002466025.1| - 7.4e-54 183.4 1.1 9.9e-54 183.0 0.7 1.2 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_YMGG PF13441.1 gi|219851593|ref|YP_002466025.1| - 0.21 11.1 13.4 0.18 11.3 1.1 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper C_GCAxxG_C_C PF09719.5 gi|219851593|ref|YP_002466025.1| - 0.23 11.2 1.9 0.28 10.9 0.1 1.9 2 0 0 2 2 2 0 Putative redox-active protein (C_GCAxxG_C_C) Rick_17kDa_Anti PF05433.10 gi|219851593|ref|YP_002466025.1| - 0.32 10.6 10.0 2.2 8.0 0.6 2.5 2 0 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|219851593|ref|YP_002466025.1| - 0.34 10.5 10.7 0.86 9.2 0.6 2.4 2 0 0 2 2 2 0 Glycine zipper Bacteriocin_IIc PF10439.4 gi|219851593|ref|YP_002466025.1| - 2.2 8.4 8.2 6.5 6.9 1.8 2.7 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_OmpA PF13436.1 gi|219851593|ref|YP_002466025.1| - 4.2 7.0 6.8 5.6 6.6 0.2 2.4 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain UPF0058 PF01893.11 gi|219851594|ref|YP_002466026.1| - 2.8e-14 52.9 0.9 3.2e-14 52.7 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Radical_SAM PF04055.16 gi|219851595|ref|YP_002466027.1| - 4.3e-18 66.0 0.0 8.1e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|219851595|ref|YP_002466027.1| - 8e-09 35.4 0.1 2.4e-08 33.8 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|219851595|ref|YP_002466027.1| - 0.042 13.9 0.2 0.18 11.9 0.1 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DNA_primase_S PF01896.14 gi|219851596|ref|YP_002466028.1| - 2.5e-19 69.4 0.0 4.4e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit UPF0278 PF08745.6 gi|219851597|ref|YP_002466029.1| - 0.0029 16.8 0.2 0.0043 16.3 0.1 1.2 1 0 0 1 1 1 1 UPF0278 family Sld5 PF05916.6 gi|219851597|ref|YP_002466029.1| - 0.024 14.9 1.2 0.046 14.0 0.6 1.7 1 1 0 1 1 1 0 GINS complex protein Toprim PF01751.17 gi|219851597|ref|YP_002466029.1| - 0.095 12.6 0.0 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Toprim domain DUF883 PF05957.8 gi|219851597|ref|YP_002466029.1| - 0.85 10.0 3.5 12 6.3 0.0 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) TSC22 PF01166.13 gi|219851597|ref|YP_002466029.1| - 4.1 7.4 5.6 33 4.5 0.1 3.2 3 2 0 3 3 3 0 TSC-22/dip/bun family Ribosomal_L44 PF00935.14 gi|219851598|ref|YP_002466030.1| - 3.1e-27 94.3 5.6 4.1e-27 93.9 3.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Elf1 PF05129.8 gi|219851598|ref|YP_002466030.1| - 0.0067 16.1 0.5 2.4 7.9 0.1 2.2 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like DUF2296 PF10058.4 gi|219851598|ref|YP_002466030.1| - 0.056 13.1 1.2 3.3 7.5 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-UBR PF02207.15 gi|219851598|ref|YP_002466030.1| - 0.07 12.8 0.8 6 6.6 0.0 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-ribbon_3 PF13248.1 gi|219851598|ref|YP_002466030.1| - 0.085 12.0 0.9 9.4 5.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_8 PF13183.1 gi|219851598|ref|YP_002466030.1| - 0.089 12.8 0.2 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Zn_Tnp_IS1 PF03811.8 gi|219851598|ref|YP_002466030.1| - 0.14 11.7 1.4 7 6.2 0.0 2.4 2 0 0 2 2 2 0 InsA N-terminal domain NOB1_Zn_bind PF08772.6 gi|219851598|ref|YP_002466030.1| - 0.18 11.6 3.0 1.7 8.5 0.2 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|219851598|ref|YP_002466030.1| - 0.2 11.6 2.1 10 6.1 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|219851598|ref|YP_002466030.1| - 0.23 11.3 1.3 0.51 10.2 0.9 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 ZZ PF00569.12 gi|219851598|ref|YP_002466030.1| - 0.35 10.4 2.9 0.37 10.3 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type Ribosomal_L33 PF00471.15 gi|219851598|ref|YP_002466030.1| - 2.9 8.1 7.3 0.46 10.7 1.8 2.0 2 0 0 2 2 2 0 Ribosomal protein L33 Ribosomal_S27e PF01667.12 gi|219851599|ref|YP_002466031.1| - 5.6e-24 83.4 0.1 6e-24 83.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|219851599|ref|YP_002466031.1| - 0.0014 17.8 1.9 0.0019 17.4 1.3 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|219851599|ref|YP_002466031.1| - 0.0028 17.5 0.4 0.0041 17.0 0.3 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|219851599|ref|YP_002466031.1| - 0.035 13.7 2.2 2.9 7.5 1.5 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Terminase_GpA PF05876.7 gi|219851599|ref|YP_002466031.1| - 0.048 12.0 0.1 0.048 12.0 0.1 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) IBR PF01485.16 gi|219851599|ref|YP_002466031.1| - 0.05 13.4 0.3 0.056 13.3 0.2 1.1 1 0 0 1 1 1 0 IBR domain Lar_restr_allev PF14354.1 gi|219851599|ref|YP_002466031.1| - 0.067 13.4 1.4 0.24 11.7 1.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|219851599|ref|YP_002466031.1| - 0.089 12.7 0.8 0.14 12.1 0.6 1.3 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|219851599|ref|YP_002466031.1| - 0.1 12.3 0.9 0.55 9.9 0.5 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|219851599|ref|YP_002466031.1| - 0.1 12.5 0.3 5.2 7.0 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin DUF3797 PF12677.2 gi|219851599|ref|YP_002466031.1| - 0.15 11.7 0.4 0.15 11.7 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|219851599|ref|YP_002466031.1| - 0.17 11.7 1.2 0.44 10.4 0.9 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219851599|ref|YP_002466031.1| - 1.3 8.7 3.8 8.5 6.1 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|219851600|ref|YP_002466032.1| - 1.1e-24 86.2 0.0 1.7e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|219851600|ref|YP_002466032.1| - 9.5e-12 44.8 0.4 6.4e-11 42.1 0.0 2.3 3 0 0 3 3 3 1 S1 RNA binding domain ProRS-C_2 PF09181.5 gi|219851600|ref|YP_002466032.1| - 0.0074 16.1 0.2 0.016 15.1 0.1 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Nop10p PF04135.7 gi|219851601|ref|YP_002466033.1| - 1.9e-20 72.3 1.6 2e-20 72.2 1.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-nanos PF05741.8 gi|219851601|ref|YP_002466033.1| - 0.031 14.2 0.5 0.038 13.9 0.1 1.3 1 1 0 1 1 1 0 Nanos RNA binding domain DUF2685 PF10886.3 gi|219851601|ref|YP_002466033.1| - 0.09 12.8 0.5 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2685) Prok-RING_4 PF14447.1 gi|219851601|ref|YP_002466033.1| - 0.13 11.8 0.5 0.16 11.5 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 PAC2 PF09754.4 gi|219851602|ref|YP_002466034.1| - 1.5e-51 175.3 0.0 1.8e-51 175.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PHP_C PF13263.1 gi|219851603|ref|YP_002466035.1| - 5.6e-05 22.5 0.0 0.00017 21.0 0.0 1.8 2 0 0 2 2 2 1 PHP-associated Fer4 PF00037.22 gi|219851604|ref|YP_002466036.1| - 1.9e-13 49.3 14.5 4.9e-08 32.2 1.7 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851604|ref|YP_002466036.1| - 2.6e-13 50.0 35.2 3.5e-08 33.6 9.1 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851604|ref|YP_002466036.1| - 7.9e-11 41.3 10.7 2.6e-06 27.0 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851604|ref|YP_002466036.1| - 1.9e-10 41.3 7.2 8.9e-05 23.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|219851604|ref|YP_002466036.1| - 1.8e-09 37.2 7.5 2.5e-09 36.7 5.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851604|ref|YP_002466036.1| - 5.6e-09 36.1 7.8 0.00041 20.5 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851604|ref|YP_002466036.1| - 1.8e-08 33.8 12.8 0.00031 20.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851604|ref|YP_002466036.1| - 2.7e-07 30.3 10.0 5.1e-07 29.4 6.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851604|ref|YP_002466036.1| - 1.2e-05 25.5 19.5 0.01 16.3 3.9 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219851604|ref|YP_002466036.1| - 1.7e-05 25.0 7.4 0.019 15.2 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851604|ref|YP_002466036.1| - 3.1e-05 23.9 15.2 0.019 15.2 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219851604|ref|YP_002466036.1| - 7.6e-05 22.6 12.4 0.0019 18.1 8.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219851604|ref|YP_002466036.1| - 0.00013 22.4 8.7 0.063 13.8 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219851604|ref|YP_002466036.1| - 0.00027 21.2 11.0 0.068 13.6 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219851604|ref|YP_002466036.1| - 0.0018 18.5 12.4 0.16 12.3 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|219851604|ref|YP_002466036.1| - 0.0091 15.8 4.8 0.029 14.2 3.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|219851604|ref|YP_002466036.1| - 0.15 11.7 4.0 0.23 11.0 2.8 1.4 1 1 0 1 1 1 0 Growth factor receptor domain IV Fer4_19 PF06902.6 gi|219851604|ref|YP_002466036.1| - 0.51 10.1 7.9 4.3 7.2 0.6 2.7 2 2 1 3 3 3 0 Divergent 4Fe-4S mono-cluster FAD_binding_3 PF01494.14 gi|219851605|ref|YP_002466037.1| - 3.1e-15 56.0 3.6 1.6e-05 24.1 0.2 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|219851605|ref|YP_002466037.1| - 2e-09 36.8 1.5 0.00019 20.4 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|219851605|ref|YP_002466037.1| - 3e-09 36.4 6.0 1.1e-08 34.6 3.6 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|219851605|ref|YP_002466037.1| - 5.4e-09 35.3 2.9 5.7e-07 28.7 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|219851605|ref|YP_002466037.1| - 3e-07 29.2 0.8 6.4e-07 28.1 0.5 1.5 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|219851605|ref|YP_002466037.1| - 3.2e-07 30.4 3.3 1e-06 28.8 2.5 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|219851605|ref|YP_002466037.1| - 5.2e-06 26.3 0.2 1.7e-05 24.7 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|219851605|ref|YP_002466037.1| - 6.8e-05 22.0 0.2 0.00018 20.7 0.0 1.8 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|219851605|ref|YP_002466037.1| - 0.0002 20.3 1.5 0.0038 16.1 0.6 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|219851605|ref|YP_002466037.1| - 0.0005 18.8 1.4 0.63 8.5 0.2 2.8 2 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|219851605|ref|YP_002466037.1| - 0.0049 15.7 1.9 0.0049 15.7 1.3 1.9 2 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|219851605|ref|YP_002466037.1| - 0.017 15.5 0.2 0.049 14.0 0.2 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|219851605|ref|YP_002466037.1| - 0.018 15.1 0.1 0.035 14.1 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|219851605|ref|YP_002466037.1| - 0.042 12.6 0.1 0.17 10.6 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase H-K_ATPase_N PF09040.6 gi|219851605|ref|YP_002466037.1| - 0.095 12.8 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain DUF1493 PF07377.7 gi|219851605|ref|YP_002466037.1| - 0.095 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) RNase_HII PF01351.13 gi|219851606|ref|YP_002466038.1| - 4.1e-43 147.3 0.1 4.7e-43 147.1 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Peptidase_M50 PF02163.17 gi|219851607|ref|YP_002466039.1| - 2.3e-27 95.2 0.0 1.2e-26 92.8 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|219851607|ref|YP_002466039.1| - 1.2e-08 34.6 0.0 1.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 PDZ domain SHOCT PF09851.4 gi|219851608|ref|YP_002466040.1| - 0.00032 20.0 0.1 0.0006 19.1 0.0 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF4271 PF14093.1 gi|219851608|ref|YP_002466040.1| - 0.0034 17.0 0.1 0.0041 16.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) DUF221 PF02714.10 gi|219851608|ref|YP_002466040.1| - 0.024 13.5 0.3 0.028 13.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF221 2TM PF13239.1 gi|219851608|ref|YP_002466040.1| - 0.12 12.5 0.6 0.16 12.0 0.4 1.2 1 0 0 1 1 1 0 2TM domain DUF1707 PF08044.6 gi|219851608|ref|YP_002466040.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF4229 PF14012.1 gi|219851608|ref|YP_002466040.1| - 0.21 11.5 7.4 0.32 10.9 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) MCPsignal PF00015.16 gi|219851609|ref|YP_002466041.1| - 2.2e-52 177.7 46.2 2e-49 168.0 20.2 2.6 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|219851609|ref|YP_002466041.1| - 1.4e-14 54.2 1.1 1.4e-05 25.3 0.0 3.8 3 2 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|219851609|ref|YP_002466041.1| - 3.2e-14 52.8 0.0 2.1e-05 24.5 0.0 3.8 3 1 0 3 3 3 2 PAS fold PAS PF00989.19 gi|219851609|ref|YP_002466041.1| - 6.7e-11 41.9 0.0 4.4e-06 26.4 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219851609|ref|YP_002466041.1| - 3.9e-05 23.3 0.0 0.02 14.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|219851609|ref|YP_002466041.1| - 0.00099 19.1 1.0 1.3 9.0 0.0 4.8 5 1 1 6 6 6 1 PAS fold Laminin_II PF06009.7 gi|219851609|ref|YP_002466041.1| - 0.017 14.8 33.8 0.37 10.5 3.9 4.5 2 2 2 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|219851609|ref|YP_002466041.1| - 0.019 14.9 1.1 0.019 14.9 0.8 4.7 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|219851609|ref|YP_002466041.1| - 0.062 12.4 7.9 0.23 10.6 1.0 2.8 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.4 gi|219851609|ref|YP_002466041.1| - 0.11 11.2 14.3 0.043 12.5 2.3 2.4 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF948 PF06103.6 gi|219851609|ref|YP_002466041.1| - 0.16 11.8 35.1 0.69 9.8 0.8 6.2 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|219851609|ref|YP_002466041.1| - 0.31 10.1 27.5 1 8.4 8.6 3.4 1 1 2 3 3 3 0 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|219851609|ref|YP_002466041.1| - 0.38 10.5 23.4 0.91 9.3 0.9 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|219851609|ref|YP_002466041.1| - 0.38 9.3 21.4 0.73 8.4 1.9 3.2 2 1 1 3 3 3 0 Spc7 kinetochore protein RmuC PF02646.11 gi|219851609|ref|YP_002466041.1| - 0.4 9.4 19.6 1.4 7.6 2.4 4.5 2 2 2 4 4 4 0 RmuC family BLOC1_2 PF10046.4 gi|219851609|ref|YP_002466041.1| - 0.84 9.8 18.8 5.9 7.0 0.7 4.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|219851609|ref|YP_002466041.1| - 1.4 9.1 21.9 6.3 7.0 0.8 4.8 1 1 4 5 5 5 0 Syntaxin Fib_alpha PF08702.5 gi|219851609|ref|YP_002466041.1| - 1.7 8.7 19.4 1.3 9.1 0.6 4.4 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|219851609|ref|YP_002466041.1| - 2.1 8.1 17.9 2.1 8.2 0.5 3.4 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2365 PF10157.4 gi|219851609|ref|YP_002466041.1| - 2.3 8.0 15.1 0.16 11.8 1.8 3.7 3 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2365) TMPIT PF07851.8 gi|219851609|ref|YP_002466041.1| - 4.2 6.3 10.8 3.2 6.7 0.5 3.0 2 2 1 3 3 3 0 TMPIT-like protein DUF2408 PF10303.4 gi|219851609|ref|YP_002466041.1| - 4.3 7.4 8.2 1.8 8.7 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2408) Vps51 PF08700.6 gi|219851609|ref|YP_002466041.1| - 8 6.3 11.3 6.7 6.6 0.3 4.2 2 2 2 4 4 4 0 Vps51/Vps67 TPR_MLP1_2 PF07926.7 gi|219851609|ref|YP_002466041.1| - 8.4 6.1 22.2 26 4.5 4.0 4.4 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein MscS_porin PF12795.2 gi|219851609|ref|YP_002466041.1| - 8.4 5.6 12.7 0.068 12.4 0.7 2.8 2 1 0 2 2 1 0 Mechanosensitive ion channel porin domain CheW PF01584.14 gi|219851610|ref|YP_002466042.1| - 5.9e-27 93.8 1.7 6.9e-27 93.5 1.1 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|219851611|ref|YP_002466043.1| - 1.6e-51 174.8 47.4 1.6e-48 165.0 20.6 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|219851611|ref|YP_002466043.1| - 1.2e-14 54.5 0.9 2.1e-07 31.2 0.0 3.6 3 1 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|219851611|ref|YP_002466043.1| - 3.5e-13 49.5 0.0 3.9e-06 26.8 0.0 3.1 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|219851611|ref|YP_002466043.1| - 4.7e-10 39.2 0.0 3e-05 23.7 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219851611|ref|YP_002466043.1| - 6.4e-05 22.6 0.0 0.12 12.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|219851611|ref|YP_002466043.1| - 0.0017 18.3 0.2 0.41 10.6 0.0 4.1 4 1 1 5 5 5 1 PAS fold DUF948 PF06103.6 gi|219851611|ref|YP_002466043.1| - 0.0066 16.2 28.6 1.2 9.0 1.0 5.4 2 2 3 5 5 5 3 Bacterial protein of unknown function (DUF948) GAS PF13851.1 gi|219851611|ref|YP_002466043.1| - 0.0086 15.2 7.8 0.072 12.2 1.4 2.6 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|219851611|ref|YP_002466043.1| - 0.014 15.1 36.2 0.4 10.4 4.0 4.3 2 2 2 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|219851611|ref|YP_002466043.1| - 0.015 15.2 1.4 0.015 15.2 1.0 3.9 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.7 gi|219851611|ref|YP_002466043.1| - 0.024 14.4 22.0 0.12 12.1 1.1 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Syntaxin PF00804.20 gi|219851611|ref|YP_002466043.1| - 0.14 12.3 21.1 12 6.1 0.4 4.4 1 1 2 3 3 3 0 Syntaxin Spc7 PF08317.6 gi|219851611|ref|YP_002466043.1| - 0.15 10.6 19.6 0.81 8.2 1.8 3.2 2 1 1 3 3 3 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|219851611|ref|YP_002466043.1| - 0.54 10.1 16.7 1.6 8.5 0.6 3.3 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Reo_sigmaC PF04582.7 gi|219851611|ref|YP_002466043.1| - 0.68 9.0 29.7 1.1 8.4 3.7 3.0 1 1 1 3 3 3 0 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|219851611|ref|YP_002466043.1| - 0.83 9.8 19.0 4.3 7.5 0.9 4.4 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2365 PF10157.4 gi|219851611|ref|YP_002466043.1| - 1.2 9.0 15.8 0.47 10.3 2.7 4.0 3 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2365) IFT57 PF10498.4 gi|219851611|ref|YP_002466043.1| - 1.3 7.6 14.3 0.57 8.8 2.4 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.5 gi|219851611|ref|YP_002466043.1| - 1.7 8.7 20.0 0.8 9.8 0.6 4.3 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family Vps51 PF08700.6 gi|219851611|ref|YP_002466043.1| - 2.1 8.2 10.8 6.8 6.6 0.3 4.2 3 1 1 4 4 4 0 Vps51/Vps67 Aida_N PF08910.5 gi|219851611|ref|YP_002466043.1| - 5.1 7.3 6.5 1.7 8.9 0.6 2.9 2 2 0 2 2 2 0 Aida N-terminus DUF2408 PF10303.4 gi|219851611|ref|YP_002466043.1| - 5.5 7.1 10.3 1.3 9.1 1.0 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF2408) TPR_MLP1_2 PF07926.7 gi|219851611|ref|YP_002466043.1| - 9.7 5.9 22.3 29 4.3 4.0 3.7 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein CheW PF01584.14 gi|219851612|ref|YP_002466044.1| - 7e-28 96.8 0.9 8.4e-28 96.5 0.6 1.1 1 0 0 1 1 1 1 CheW-like domain Band_7 PF01145.20 gi|219851613|ref|YP_002466045.1| - 1.2e-33 116.5 3.2 1.2e-33 116.5 2.2 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family NfeD PF01957.13 gi|219851614|ref|YP_002466046.1| - 4.4e-21 75.5 5.9 5.1e-21 75.3 4.1 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF819 PF05684.7 gi|219851614|ref|YP_002466046.1| - 0.0013 17.6 3.8 0.0017 17.2 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF819) DUF4245 PF14030.1 gi|219851614|ref|YP_002466046.1| - 0.08 12.6 1.4 0.35 10.5 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4245) DUF3955 PF13127.1 gi|219851614|ref|YP_002466046.1| - 0.77 9.3 8.8 2.5 7.6 0.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) 5_nucleotid_C PF02872.13 gi|219851615|ref|YP_002466047.1| - 1.4e-19 70.6 0.0 2.8e-19 69.6 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|219851615|ref|YP_002466047.1| - 1.1e-05 24.9 0.1 0.069 12.5 0.0 2.8 3 0 0 3 3 3 2 Calcineurin-like phosphoesterase DsrD PF08679.6 gi|219851617|ref|YP_002466049.1| - 0.11 12.4 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) PRK PF00485.13 gi|219851618|ref|YP_002466050.1| - 1.8e-51 174.4 0.0 2.9e-51 173.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|219851618|ref|YP_002466050.1| - 0.00013 22.7 0.3 0.00051 20.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219851618|ref|YP_002466050.1| - 0.00096 19.4 0.0 0.0027 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851618|ref|YP_002466050.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|219851618|ref|YP_002466050.1| - 0.0079 15.8 0.0 0.025 14.2 0.0 1.8 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|219851618|ref|YP_002466050.1| - 0.019 15.3 3.0 0.16 12.2 2.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|219851618|ref|YP_002466050.1| - 0.025 14.1 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RecX PF02631.11 gi|219851618|ref|YP_002466050.1| - 0.026 14.7 0.9 16 5.6 0.1 3.1 2 1 1 3 3 3 0 RecX family T2SE PF00437.15 gi|219851618|ref|YP_002466050.1| - 0.035 12.9 0.0 0.099 11.5 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|219851618|ref|YP_002466050.1| - 0.039 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|219851618|ref|YP_002466050.1| - 0.078 12.6 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain CoaE PF01121.15 gi|219851618|ref|YP_002466050.1| - 0.12 11.7 0.7 4.7 6.5 0.2 2.3 2 0 0 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.22 gi|219851618|ref|YP_002466050.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|219851618|ref|YP_002466050.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Radical_SAM PF04055.16 gi|219851619|ref|YP_002466051.1| - 3.3e-11 43.6 0.0 6.2e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily BATS PF06968.8 gi|219851619|ref|YP_002466051.1| - 0.0076 16.0 0.2 0.034 13.9 0.0 2.0 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain PurS PF02700.9 gi|219851620|ref|YP_002466052.1| - 1.3e-22 79.4 0.0 1.5e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|219851621|ref|YP_002466053.1| - 2.2e-43 148.0 0.0 2.5e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|219851621|ref|YP_002466053.1| - 5.6e-09 35.6 0.0 6.7e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|219851621|ref|YP_002466053.1| - 1.1e-08 34.8 0.1 1.9e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|219851621|ref|YP_002466053.1| - 3.2e-08 33.0 0.0 4.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|219851621|ref|YP_002466053.1| - 5.4e-06 25.9 0.0 6.5e-06 25.7 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|219851621|ref|YP_002466053.1| - 0.0016 18.1 0.0 0.0047 16.5 0.0 1.7 2 0 0 2 2 2 1 SNO glutamine amidotransferase family BPL_N PF09825.4 gi|219851621|ref|YP_002466053.1| - 0.15 10.7 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal FeThRed_B PF02943.10 gi|219851622|ref|YP_002466054.1| - 5.9e-22 77.4 0.9 6.6e-22 77.2 0.6 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain SIMPL PF04402.9 gi|219851623|ref|YP_002466055.1| - 3.7e-42 144.5 14.0 4.3e-42 144.3 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Flexi_CP PF00286.15 gi|219851623|ref|YP_002466055.1| - 0.0057 16.3 0.5 0.012 15.2 0.4 1.6 1 0 0 1 1 1 1 Viral coat protein LptE PF04390.7 gi|219851623|ref|YP_002466055.1| - 0.34 10.6 5.6 0.2 11.4 2.4 1.7 1 1 0 1 1 1 0 Lipopolysaccharide-assembly UPF0060 PF02694.10 gi|219851624|ref|YP_002466056.1| - 9.8e-44 147.7 9.8 1.2e-43 147.5 6.8 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family 7TMR-DISM_7TM PF07695.6 gi|219851624|ref|YP_002466056.1| - 0.16 11.6 9.1 0.07 12.7 4.8 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling EamA PF00892.15 gi|219851624|ref|YP_002466056.1| - 0.41 10.6 8.3 1.5 8.8 5.8 1.8 1 1 0 1 1 1 0 EamA-like transporter family PDGLE PF13190.1 gi|219851624|ref|YP_002466056.1| - 6.3 6.5 5.9 1.1 9.0 0.2 2.1 2 0 0 2 2 2 0 PDGLE domain TMEM238 PF15125.1 gi|219851624|ref|YP_002466056.1| - 7.9 6.4 13.7 4.8 7.1 0.5 2.5 2 1 1 3 3 3 0 TMEM238 protein family AgrB PF04647.10 gi|219851625|ref|YP_002466057.1| - 0.2 10.7 8.9 0.66 9.0 1.5 2.5 2 1 0 2 2 2 0 Accessory gene regulator B MNHE PF01899.11 gi|219851625|ref|YP_002466057.1| - 2.1 7.9 6.0 5 6.7 4.1 1.5 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit CbiQ PF02361.11 gi|219851625|ref|YP_002466057.1| - 3.4 7.1 12.3 5.1 6.5 8.5 1.2 1 0 0 1 1 1 0 Cobalt transport protein PAS_9 PF13426.1 gi|219851626|ref|YP_002466058.1| - 8.1e-27 93.6 0.1 2.5e-11 43.8 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219851626|ref|YP_002466058.1| - 2.6e-24 85.1 0.0 7.5e-12 45.0 0.0 3.8 4 1 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|219851626|ref|YP_002466058.1| - 5.9e-20 71.3 0.0 3e-06 27.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219851626|ref|YP_002466058.1| - 5.5e-15 54.6 0.0 6.4e-05 22.6 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.2 gi|219851626|ref|YP_002466058.1| - 7.6e-08 32.3 0.8 0.0004 20.3 0.0 3.3 3 1 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|219851626|ref|YP_002466058.1| - 4.2e-07 29.9 0.0 0.02 14.9 0.0 2.9 3 0 0 3 3 3 2 PAS fold TBPIP PF07106.8 gi|219851626|ref|YP_002466058.1| - 7.1e-06 25.6 0.0 1.5e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FeoC PF09012.5 gi|219851626|ref|YP_002466058.1| - 0.0011 18.5 0.0 0.0028 17.3 0.0 1.7 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|219851626|ref|YP_002466058.1| - 0.0088 15.6 0.4 0.091 12.4 0.1 2.6 2 0 0 2 2 2 1 HTH domain RPA_C PF08784.6 gi|219851626|ref|YP_002466058.1| - 0.015 15.7 0.1 0.039 14.3 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_24 PF13412.1 gi|219851626|ref|YP_002466058.1| - 0.017 14.5 0.0 0.058 12.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219851626|ref|YP_002466058.1| - 0.066 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219851626|ref|YP_002466058.1| - 0.082 12.5 0.0 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|219851626|ref|YP_002466058.1| - 0.1 12.3 0.0 0.3 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2024 PF09630.5 gi|219851627|ref|YP_002466059.1| - 0.069 12.8 0.8 2.7 7.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) DUF702 PF05142.7 gi|219851627|ref|YP_002466059.1| - 0.11 12.7 2.4 0.12 12.5 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF702) CxxCxxCC PF03692.10 gi|219851628|ref|YP_002466060.1| - 2e-08 34.6 3.3 3.4e-08 33.8 2.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.22 gi|219851629|ref|YP_002466061.1| - 5.1e-30 104.5 0.0 6.9e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851629|ref|YP_002466061.1| - 2.8e-13 50.4 0.0 2.6e-11 44.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|219851629|ref|YP_002466061.1| - 0.00035 19.7 0.0 0.00082 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|219851629|ref|YP_002466061.1| - 0.00053 19.6 0.0 0.011 15.3 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|219851629|ref|YP_002466061.1| - 0.00076 19.0 0.0 0.016 14.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|219851629|ref|YP_002466061.1| - 0.00081 18.6 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|219851629|ref|YP_002466061.1| - 0.011 16.0 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|219851629|ref|YP_002466061.1| - 0.04 13.5 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|219851629|ref|YP_002466061.1| - 0.047 13.8 0.3 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|219851629|ref|YP_002466061.1| - 0.075 11.8 0.1 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein SbcCD_C PF13558.1 gi|219851629|ref|YP_002466061.1| - 0.099 12.5 0.0 0.66 9.9 0.0 2.3 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|219851629|ref|YP_002466061.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|219851629|ref|YP_002466061.1| - 0.26 9.7 0.0 2.1 6.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|219851630|ref|YP_002466062.1| - 1.9e-22 79.4 23.5 1.9e-22 79.4 16.3 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219851630|ref|YP_002466062.1| - 1.2e-09 37.7 29.7 1.5e-09 37.3 20.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Voltage_CLC PF00654.15 gi|219851631|ref|YP_002466063.1| - 1.2 8.1 16.0 9.5 5.1 11.1 2.0 1 1 0 1 1 1 0 Voltage gated chloride channel TPR_1 PF00515.23 gi|219851632|ref|YP_002466064.1| - 1.5e-17 62.3 8.4 4.4e-10 38.7 0.9 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|219851632|ref|YP_002466064.1| - 1e-16 60.3 8.6 4.9e-09 35.7 1.6 2.1 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.1 gi|219851632|ref|YP_002466064.1| - 2.4e-15 56.7 7.2 6.7e-11 42.5 1.7 1.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219851632|ref|YP_002466064.1| - 9.7e-15 53.2 8.4 1.7e-08 33.7 0.3 2.5 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219851632|ref|YP_002466064.1| - 1.9e-09 37.3 2.5 0.00065 20.1 0.3 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219851632|ref|YP_002466064.1| - 1.5e-08 33.7 5.9 0.00054 19.5 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219851632|ref|YP_002466064.1| - 1.9e-08 34.5 8.8 0.00021 21.5 0.6 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|219851632|ref|YP_002466064.1| - 2e-08 34.2 2.5 3.6e-08 33.4 1.7 1.4 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|219851632|ref|YP_002466064.1| - 4.4e-07 29.2 2.7 0.0019 17.8 0.3 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219851632|ref|YP_002466064.1| - 5.2e-06 26.2 6.7 0.014 15.3 0.7 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|219851632|ref|YP_002466064.1| - 9.8e-05 22.0 9.5 0.0077 16.0 1.3 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat MIT PF04212.13 gi|219851632|ref|YP_002466064.1| - 0.00019 21.2 4.6 0.032 14.1 0.3 2.3 2 0 0 2 2 2 2 MIT (microtubule interacting and transport) domain TPR_17 PF13431.1 gi|219851632|ref|YP_002466064.1| - 0.002 18.1 9.7 0.051 13.7 1.3 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|219851632|ref|YP_002466064.1| - 0.0031 17.3 1.8 0.59 10.1 0.2 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219851632|ref|YP_002466064.1| - 0.0042 17.4 5.4 0.5 10.9 0.4 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|219851632|ref|YP_002466064.1| - 0.012 14.4 1.5 0.013 14.2 1.1 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|219851632|ref|YP_002466064.1| - 0.015 15.3 1.9 0.027 14.6 1.3 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|219851632|ref|YP_002466064.1| - 0.037 13.8 4.5 1.2 9.0 0.4 2.2 1 1 1 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat DUF3808 PF10300.4 gi|219851632|ref|YP_002466064.1| - 0.052 12.1 0.3 0.065 11.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) TPR_21 PF09976.4 gi|219851632|ref|YP_002466064.1| - 0.11 12.4 12.2 0.043 13.7 5.2 2.2 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219851632|ref|YP_002466064.1| - 0.15 11.9 0.8 0.44 10.4 0.6 1.7 1 1 1 2 2 2 0 Tetratricopeptide repeat FAT PF02259.18 gi|219851632|ref|YP_002466064.1| - 0.19 10.6 3.8 0.43 9.4 2.6 1.4 1 1 0 1 1 1 0 FAT domain Alkyl_sulf_dimr PF14863.1 gi|219851632|ref|YP_002466064.1| - 0.23 11.6 5.0 4 7.6 0.2 2.0 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation DUF4398 PF14346.1 gi|219851632|ref|YP_002466064.1| - 1.1 9.3 7.4 2.7 8.1 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) 4HB_MCP_1 PF12729.2 gi|219851632|ref|YP_002466064.1| - 2.2 7.6 7.4 2.2 7.6 0.2 2.0 1 1 1 2 2 2 0 Four helix bundle sensory module for signal transduction YfdX PF10938.3 gi|219851632|ref|YP_002466064.1| - 3.9 7.1 8.9 5.1 6.7 0.2 2.9 2 1 1 3 3 3 0 YfdX protein DUF3821 PF12863.2 gi|219851633|ref|YP_002466065.1| - 2.9e-47 161.0 0.2 8.7e-47 159.4 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) Lipase_GDSL_2 PF13472.1 gi|219851633|ref|YP_002466065.1| - 2e-17 63.8 0.9 4.4e-17 62.7 0.6 1.6 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219851633|ref|YP_002466065.1| - 3.8e-15 56.3 0.2 6.3e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase ORC6 PF05460.8 gi|219851633|ref|YP_002466065.1| - 1.2 8.1 5.3 2.1 7.3 3.7 1.3 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) HAD_2 PF13419.1 gi|219851634|ref|YP_002466066.1| - 2.1e-26 93.2 0.0 2.5e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|219851634|ref|YP_002466066.1| - 2.1e-14 54.4 0.0 7.2e-13 49.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|219851634|ref|YP_002466066.1| - 5.4e-07 29.2 0.0 3.2e-05 23.5 0.0 2.5 3 0 0 3 3 3 1 HAD-hyrolase-like HAD PF12710.2 gi|219851634|ref|YP_002466066.1| - 0.00073 19.7 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|219851634|ref|YP_002466066.1| - 0.064 13.1 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Methyltransf_26 PF13659.1 gi|219851635|ref|YP_002466067.1| - 2.5e-07 30.7 0.1 7e-07 29.2 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|219851635|ref|YP_002466067.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase UPF0020 PF01170.13 gi|219851635|ref|YP_002466067.1| - 0.25 10.9 0.0 0.42 10.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 HATPase_c PF02518.21 gi|219851636|ref|YP_002466068.1| - 1.3e-26 92.4 0.0 2.7e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KaiB PF07689.7 gi|219851636|ref|YP_002466068.1| - 8.8e-25 85.9 0.0 1.7e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 KaiB domain PAS_9 PF13426.1 gi|219851636|ref|YP_002466068.1| - 1.1e-16 61.0 0.0 1.5e-07 31.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219851636|ref|YP_002466068.1| - 2.6e-13 49.7 0.2 1.2e-06 28.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|219851636|ref|YP_002466068.1| - 1.1e-10 40.9 0.0 0.00094 18.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|219851636|ref|YP_002466068.1| - 1.3e-10 41.1 0.2 3.8e-10 39.6 0.1 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|219851636|ref|YP_002466068.1| - 5.8e-10 39.1 0.1 0.00012 22.1 0.0 3.3 2 1 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.1 gi|219851636|ref|YP_002466068.1| - 3.4e-06 26.6 0.0 6.6e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|219851636|ref|YP_002466068.1| - 2.3e-05 24.3 0.1 0.042 13.8 0.0 3.2 2 1 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.1 gi|219851636|ref|YP_002466068.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sm_multidrug_ex PF06695.6 gi|219851638|ref|YP_002466070.1| - 0.00012 22.2 2.2 0.00025 21.1 1.5 1.5 1 0 0 1 1 1 1 Putative small multi-drug export protein NdhL PF10716.4 gi|219851638|ref|YP_002466070.1| - 0.11 12.3 0.1 0.11 12.3 0.1 2.2 3 0 0 3 3 3 0 NADH dehydrogenase transmembrane subunit CMD PF02627.15 gi|219851640|ref|YP_002466072.1| - 1.2e-07 31.5 0.3 1.3e-07 31.3 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family His_Phos_1 PF00300.17 gi|219851643|ref|YP_002466075.1| - 2.3e-16 60.3 0.1 5.3e-14 52.5 0.0 2.1 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) Nif11 PF07862.6 gi|219851643|ref|YP_002466075.1| - 0.086 12.7 0.7 0.29 11.1 0.0 2.2 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function HTH_35 PF13693.1 gi|219851643|ref|YP_002466075.1| - 0.1 12.3 0.1 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NAD_binding_1 PF00175.16 gi|219851644|ref|YP_002466076.1| - 3.7e-22 78.9 0.0 1.3e-21 77.1 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|219851644|ref|YP_002466076.1| - 3.8e-16 59.0 0.1 5.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|219851644|ref|YP_002466076.1| - 2.8e-07 30.5 0.0 0.0001 22.2 0.0 2.3 1 1 1 2 2 2 2 Ferric reductase NAD binding domain ABC_tran PF00005.22 gi|219851645|ref|YP_002466077.1| - 1.9e-24 86.5 0.0 2.5e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851645|ref|YP_002466077.1| - 3.1e-10 40.5 1.6 0.00015 21.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|219851645|ref|YP_002466077.1| - 3.6e-08 33.1 0.0 0.0042 16.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|219851645|ref|YP_002466077.1| - 5.2e-05 23.4 0.1 0.00039 20.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851645|ref|YP_002466077.1| - 7e-05 22.8 0.0 0.00011 22.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|219851645|ref|YP_002466077.1| - 8.6e-05 21.9 0.0 0.00024 20.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|219851645|ref|YP_002466077.1| - 0.00087 18.5 0.1 0.0026 17.0 0.1 1.7 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|219851645|ref|YP_002466077.1| - 0.0018 18.2 0.0 0.0039 17.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|219851645|ref|YP_002466077.1| - 0.002 17.3 0.0 0.0027 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|219851645|ref|YP_002466077.1| - 0.0051 15.7 0.0 0.0079 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_23 PF13476.1 gi|219851645|ref|YP_002466077.1| - 0.007 16.7 0.3 0.011 16.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|219851645|ref|YP_002466077.1| - 0.0071 16.0 0.1 0.049 13.3 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase MobB PF03205.9 gi|219851645|ref|YP_002466077.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|219851645|ref|YP_002466077.1| - 0.018 14.9 0.0 0.21 11.5 0.0 2.5 2 2 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|219851645|ref|YP_002466077.1| - 0.021 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|219851645|ref|YP_002466077.1| - 0.024 15.1 0.0 0.037 14.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|219851645|ref|YP_002466077.1| - 0.025 13.9 0.0 0.065 12.6 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein KAP_NTPase PF07693.9 gi|219851645|ref|YP_002466077.1| - 0.028 13.4 0.0 0.03 13.2 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_15 PF13175.1 gi|219851645|ref|YP_002466077.1| - 0.03 13.3 0.0 0.66 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|219851645|ref|YP_002466077.1| - 0.036 12.9 0.1 0.15 10.9 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|219851645|ref|YP_002466077.1| - 0.048 13.2 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|219851645|ref|YP_002466077.1| - 0.065 12.7 0.1 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|219851645|ref|YP_002466077.1| - 0.072 12.9 0.0 0.27 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|219851645|ref|YP_002466077.1| - 0.077 12.5 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|219851645|ref|YP_002466077.1| - 0.094 11.8 0.0 0.46 9.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.15 gi|219851645|ref|YP_002466077.1| - 0.11 11.1 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.1 gi|219851645|ref|YP_002466077.1| - 0.11 13.2 0.0 0.16 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|219851645|ref|YP_002466077.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|219851645|ref|YP_002466077.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_32 PF13654.1 gi|219851645|ref|YP_002466077.1| - 0.13 10.8 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|219851645|ref|YP_002466077.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|219851645|ref|YP_002466077.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 NosD PF05048.8 gi|219851646|ref|YP_002466078.1| - 8.3e-35 120.0 13.5 8.3e-35 120.0 9.3 2.1 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Peptidase_C1 PF00112.18 gi|219851646|ref|YP_002466078.1| - 4.5e-10 39.7 1.0 5e-06 26.5 0.4 2.3 2 0 0 2 2 2 2 Papain family cysteine protease Beta_helix PF13229.1 gi|219851646|ref|YP_002466078.1| - 2.6e-08 33.7 26.2 6.9e-08 32.3 4.7 2.9 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.6 gi|219851646|ref|YP_002466078.1| - 0.0026 16.9 4.8 0.0071 15.5 3.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) EF-hand_1 PF00036.27 gi|219851646|ref|YP_002466078.1| - 0.021 14.1 5.3 2.5 7.5 0.0 3.3 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.1 gi|219851646|ref|YP_002466078.1| - 0.1 12.5 3.4 5 7.2 0.0 3.0 3 0 0 3 3 3 0 EF-hand domain NosD PF05048.8 gi|219851647|ref|YP_002466079.1| - 2e-37 128.6 10.5 2e-37 128.6 7.3 2.5 4 0 0 4 4 4 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219851647|ref|YP_002466079.1| - 1e-12 48.0 8.6 1e-12 48.0 6.0 2.5 3 0 0 3 3 3 1 Right handed beta helix region Peptidase_C1 PF00112.18 gi|219851647|ref|YP_002466079.1| - 1.8e-09 37.8 5.9 8.6e-09 35.5 4.1 1.9 1 1 0 1 1 1 1 Papain family cysteine protease EF-hand_1 PF00036.27 gi|219851647|ref|YP_002466079.1| - 0.48 9.8 6.9 2.8 7.4 0.1 3.3 3 0 0 3 3 3 0 EF hand CPSase_L_D2 PF02786.12 gi|219851648|ref|YP_002466080.1| - 2.8e-74 248.9 0.1 4.7e-74 248.2 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|219851648|ref|YP_002466080.1| - 1e-43 147.8 0.0 2.5e-43 146.6 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|219851648|ref|YP_002466080.1| - 1.4e-37 127.9 0.0 3.1e-37 126.8 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|219851648|ref|YP_002466080.1| - 1.7e-15 56.5 0.0 1.7e-14 53.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|219851648|ref|YP_002466080.1| - 5.3e-13 49.1 0.0 9.6e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|219851648|ref|YP_002466080.1| - 4e-10 39.4 0.0 8.3e-10 38.3 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|219851648|ref|YP_002466080.1| - 1.5e-07 31.0 0.0 3.2e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|219851648|ref|YP_002466080.1| - 3.8e-05 23.1 0.0 9.2e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|219851648|ref|YP_002466080.1| - 0.00011 22.1 0.0 0.00021 21.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|219851648|ref|YP_002466080.1| - 0.0026 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|219851648|ref|YP_002466080.1| - 0.019 14.2 0.0 0.04 13.1 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Radical_SAM PF04055.16 gi|219851648|ref|YP_002466080.1| - 0.057 13.5 0.0 2 8.5 0.0 2.8 2 1 0 2 2 2 0 Radical SAM superfamily PYC_OADA PF02436.13 gi|219851649|ref|YP_002466081.1| - 1.4e-60 204.0 0.0 2.3e-60 203.4 0.0 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|219851649|ref|YP_002466081.1| - 7.1e-38 130.6 0.0 9.4e-38 130.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|219851649|ref|YP_002466081.1| - 1.8e-16 59.4 3.2 4.2e-16 58.3 1.9 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|219851649|ref|YP_002466081.1| - 1.9e-09 37.0 0.6 0.0012 18.4 0.3 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|219851649|ref|YP_002466081.1| - 0.00018 20.9 1.1 0.034 13.4 0.3 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|219851649|ref|YP_002466081.1| - 0.0014 18.9 0.6 0.39 11.0 0.0 2.7 3 0 0 3 3 3 1 HlyD family secretion protein GCV_H PF01597.14 gi|219851649|ref|YP_002466081.1| - 0.15 11.7 1.5 2.8 7.6 0.0 2.3 1 1 1 2 2 2 0 Glycine cleavage H-protein ABC_tran PF00005.22 gi|219851651|ref|YP_002466083.1| - 2e-14 54.0 0.4 2.1e-13 50.7 0.3 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|219851651|ref|YP_002466083.1| - 3.4e-06 26.4 0.0 0.0048 16.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219851651|ref|YP_002466083.1| - 0.0036 16.7 0.0 0.0065 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|219851651|ref|YP_002466083.1| - 0.0054 16.7 0.1 0.13 12.2 0.1 2.0 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|219851651|ref|YP_002466083.1| - 0.0096 16.2 0.0 0.013 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|219851651|ref|YP_002466083.1| - 0.014 14.5 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|219851652|ref|YP_002466084.1| - 3.9e-23 82.2 0.0 5.3e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|219851652|ref|YP_002466084.1| - 1.4e-11 44.1 0.0 7.5e-06 25.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|219851652|ref|YP_002466084.1| - 9.2e-11 42.2 0.0 3.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|219851652|ref|YP_002466084.1| - 4.6e-08 33.2 0.0 1.3e-07 31.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219851652|ref|YP_002466084.1| - 2.2e-07 31.0 0.6 3.9e-06 26.9 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|219851652|ref|YP_002466084.1| - 4e-05 23.0 0.1 9.8e-05 21.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219851652|ref|YP_002466084.1| - 6.1e-05 23.4 0.1 8.9e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|219851652|ref|YP_002466084.1| - 0.00089 18.9 0.8 0.24 11.0 0.1 2.2 2 0 0 2 2 2 2 NACHT domain AAA PF00004.24 gi|219851652|ref|YP_002466084.1| - 0.0013 18.8 0.0 0.017 15.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|219851652|ref|YP_002466084.1| - 0.0051 16.4 0.2 0.17 11.4 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|219851652|ref|YP_002466084.1| - 0.0066 15.9 0.1 0.28 10.5 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|219851652|ref|YP_002466084.1| - 0.01 15.5 0.5 0.044 13.5 0.4 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|219851652|ref|YP_002466084.1| - 0.012 15.0 0.3 0.026 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|219851652|ref|YP_002466084.1| - 0.02 14.5 0.0 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.4 gi|219851652|ref|YP_002466084.1| - 0.025 13.2 0.2 0.053 12.1 0.1 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|219851652|ref|YP_002466084.1| - 0.035 14.9 0.3 0.39 11.5 0.1 2.3 1 1 2 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|219851652|ref|YP_002466084.1| - 0.036 13.9 0.3 0.072 12.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|219851652|ref|YP_002466084.1| - 0.057 13.1 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|219851652|ref|YP_002466084.1| - 0.058 13.8 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|219851652|ref|YP_002466084.1| - 0.061 13.2 0.0 0.56 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|219851652|ref|YP_002466084.1| - 0.11 11.4 0.1 0.16 10.8 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|219851652|ref|YP_002466084.1| - 0.13 11.7 0.6 0.22 10.9 0.4 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.1 gi|219851652|ref|YP_002466084.1| - 0.21 10.5 0.0 0.48 9.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain BioY PF02632.9 gi|219851653|ref|YP_002466085.1| - 9.7e-39 132.3 15.5 1.4e-38 131.9 10.7 1.2 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.7 gi|219851653|ref|YP_002466085.1| - 0.32 10.6 15.2 0.19 11.4 0.5 2.9 2 1 1 3 3 3 0 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|219851653|ref|YP_002466085.1| - 4.4 7.1 24.0 10 5.9 16.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) BPL_LplA_LipB PF03099.14 gi|219851654|ref|YP_002466086.1| - 2.5e-19 69.5 0.0 4.2e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|219851654|ref|YP_002466086.1| - 8.6e-15 54.1 0.0 1.9e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|219851654|ref|YP_002466086.1| - 8.3e-12 44.6 0.0 1.7e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|219851654|ref|YP_002466086.1| - 1.1e-06 27.9 0.0 2e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|219851654|ref|YP_002466086.1| - 0.0013 18.4 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_39 PF14090.1 gi|219851654|ref|YP_002466086.1| - 0.0096 15.3 0.0 0.026 13.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|219851654|ref|YP_002466086.1| - 0.01 15.7 0.0 0.042 13.7 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|219851654|ref|YP_002466086.1| - 0.012 15.1 0.0 0.032 13.8 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|219851654|ref|YP_002466086.1| - 0.059 13.4 0.1 12 6.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|219851654|ref|YP_002466086.1| - 0.089 12.4 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF2111 PF09884.4 gi|219851655|ref|YP_002466087.1| - 5.5e-35 119.0 1.3 8.2e-35 118.5 0.9 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) LRAT PF04970.8 gi|219851655|ref|YP_002466087.1| - 0.074 13.0 0.0 0.081 12.8 0.0 1.2 1 0 0 1 1 1 0 Lecithin retinol acyltransferase Oxidored_molyb PF00174.14 gi|219851655|ref|YP_002466087.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain PAS_9 PF13426.1 gi|219851655|ref|YP_002466087.1| - 0.15 12.4 0.1 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 PAS domain RtcB PF01139.12 gi|219851657|ref|YP_002466089.1| - 1.1e-149 499.0 0.0 1.2e-149 498.8 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|219851658|ref|YP_002466090.1| - 5.5e-25 87.9 0.0 6.1e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2551 PF10826.3 gi|219851660|ref|YP_002466092.1| - 1.7e-30 104.7 0.1 2e-30 104.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) SecD_SecF PF02355.11 gi|219851661|ref|YP_002466093.1| - 6.7e-36 123.2 11.2 6.7e-36 123.2 7.7 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|219851661|ref|YP_002466093.1| - 0.0078 15.3 0.1 0.023 13.8 0.1 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif ODV-E18 PF10717.4 gi|219851661|ref|YP_002466093.1| - 0.023 14.0 0.2 0.055 12.9 0.2 1.6 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Patched PF02460.13 gi|219851661|ref|YP_002466093.1| - 1.1 7.1 8.7 1.5 6.6 6.1 1.2 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|219851662|ref|YP_002466094.1| - 1.3e-14 53.8 11.0 2.7e-14 52.7 7.6 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|219851662|ref|YP_002466094.1| - 7.8e-05 21.5 17.5 7.8e-05 21.5 12.1 1.9 3 0 0 3 3 3 1 MMPL family Thioredoxin PF00085.15 gi|219851663|ref|YP_002466095.1| - 4.6e-24 84.0 0.0 5.4e-24 83.8 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|219851663|ref|YP_002466095.1| - 7.9e-12 45.3 0.1 5.5e-11 42.6 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|219851663|ref|YP_002466095.1| - 1.1e-06 28.6 0.0 1.7e-05 24.8 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|219851663|ref|YP_002466095.1| - 1.8e-05 24.4 0.1 2e-05 24.2 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|219851663|ref|YP_002466095.1| - 6.6e-05 22.8 0.1 0.00012 22.0 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|219851663|ref|YP_002466095.1| - 0.0005 19.6 0.1 0.0045 16.5 0.0 1.9 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.16 gi|219851663|ref|YP_002466095.1| - 0.0012 18.4 0.0 0.0017 18.0 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|219851663|ref|YP_002466095.1| - 0.0041 16.6 0.0 0.0046 16.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.7 gi|219851663|ref|YP_002466095.1| - 0.0058 16.0 0.0 0.0071 15.7 0.0 1.1 1 0 0 1 1 1 1 KaiB domain TraF PF13728.1 gi|219851663|ref|YP_002466095.1| - 0.011 15.1 0.0 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein Ribosomal_L9_C PF03948.9 gi|219851663|ref|YP_002466095.1| - 0.012 15.6 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain DSBA PF01323.15 gi|219851663|ref|YP_002466095.1| - 0.06 12.8 0.1 0.17 11.3 0.0 1.6 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|219851663|ref|YP_002466095.1| - 0.079 12.9 0.1 0.16 11.9 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin F420_oxidored PF03807.12 gi|219851664|ref|YP_002466096.1| - 3.4e-13 49.8 0.0 7.6e-13 48.7 0.0 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|219851664|ref|YP_002466096.1| - 0.069 12.8 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HhH-GPD PF00730.20 gi|219851665|ref|YP_002466097.1| - 4.1e-11 43.1 0.0 6.1e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|219851665|ref|YP_002466097.1| - 1.7e-05 24.2 0.0 9.3e-05 21.9 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|219851665|ref|YP_002466097.1| - 0.0011 19.0 0.4 0.05 13.7 0.2 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix domain Aldolase_II PF00596.16 gi|219851666|ref|YP_002466098.1| - 4.3e-28 98.1 0.0 5e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PNP_UDP_1 PF01048.15 gi|219851667|ref|YP_002466099.1| - 1.7e-28 99.2 0.9 1.9e-28 99.0 0.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Amidohydro_1 PF01979.15 gi|219851668|ref|YP_002466100.1| - 7.3e-46 157.3 0.2 1e-45 156.8 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|219851668|ref|YP_002466100.1| - 6.7e-09 35.4 0.1 1e-08 34.8 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|219851668|ref|YP_002466100.1| - 1.4e-05 24.8 0.8 0.00019 21.1 0.1 2.9 3 0 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|219851668|ref|YP_002466100.1| - 7.4e-05 21.8 0.0 0.00012 21.0 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_4 PF13147.1 gi|219851668|ref|YP_002466100.1| - 7.5e-05 22.9 0.4 7.5e-05 22.9 0.3 1.9 2 1 0 2 2 2 1 Amidohydrolase Polysacc_deac_1 PF01522.16 gi|219851669|ref|YP_002466101.1| - 1.4e-10 40.8 0.0 2.6e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Na_H_Exchanger PF00999.16 gi|219851670|ref|YP_002466102.1| - 8.5e-35 119.9 54.9 1.2e-34 119.5 38.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AMP-binding PF00501.23 gi|219851671|ref|YP_002466103.1| - 1.3e-97 326.9 0.0 1.6e-97 326.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219851671|ref|YP_002466103.1| - 3.3e-14 53.5 0.0 7.6e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.1 gi|219851671|ref|YP_002466103.1| - 0.0029 17.6 0.0 0.0066 16.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_5 PF01022.15 gi|219851672|ref|YP_002466104.1| - 3.4e-14 52.2 0.1 5.1e-14 51.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|219851672|ref|YP_002466104.1| - 3.7e-12 45.8 0.0 6e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|219851672|ref|YP_002466104.1| - 3.3e-05 23.8 0.0 5.5e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|219851672|ref|YP_002466104.1| - 0.0014 18.6 0.0 0.02 14.9 0.0 2.0 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_24 PF13412.1 gi|219851672|ref|YP_002466104.1| - 0.0015 17.8 0.4 0.0045 16.3 0.1 1.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding CdhD PF03599.11 gi|219851673|ref|YP_002466105.1| - 3.7e-12 45.4 0.0 5.3e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Fer4 PF00037.22 gi|219851674|ref|YP_002466106.1| - 8.2e-13 47.3 12.9 6.7e-07 28.6 0.7 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219851674|ref|YP_002466106.1| - 6.6e-09 35.9 25.3 6.1e-07 29.6 10.0 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851674|ref|YP_002466106.1| - 2.5e-08 33.4 19.5 9.1e-06 25.3 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851674|ref|YP_002466106.1| - 3.4e-08 33.1 13.2 3.4e-08 33.1 9.1 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851674|ref|YP_002466106.1| - 1.5e-07 31.6 23.9 1.1e-05 25.6 0.3 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851674|ref|YP_002466106.1| - 4.1e-07 29.5 14.6 3.6e-05 23.4 1.8 4.1 5 1 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219851674|ref|YP_002466106.1| - 6.3e-07 29.3 29.5 3e-05 23.9 11.9 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219851674|ref|YP_002466106.1| - 5.9e-06 26.0 24.1 0.00017 21.3 9.3 2.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851674|ref|YP_002466106.1| - 0.00036 20.9 16.2 0.001 19.4 0.4 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851674|ref|YP_002466106.1| - 0.00054 20.6 23.1 0.0066 17.1 0.6 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|219851674|ref|YP_002466106.1| - 0.0033 17.8 22.0 0.028 14.9 4.7 3.9 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219851674|ref|YP_002466106.1| - 0.0077 16.5 3.2 0.0077 16.5 2.2 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219851674|ref|YP_002466106.1| - 0.02 15.2 2.4 0.02 15.2 1.6 3.1 2 1 2 4 4 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|219851674|ref|YP_002466106.1| - 0.022 15.0 3.7 0.022 15.0 2.6 4.1 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|219851674|ref|YP_002466106.1| - 0.03 14.1 4.5 0.057 13.2 3.1 1.4 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_15 PF13459.1 gi|219851674|ref|YP_002466106.1| - 0.037 14.5 1.2 0.037 14.5 0.8 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|219851674|ref|YP_002466106.1| - 0.43 10.4 18.9 22 5.0 13.1 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.5 gi|219851674|ref|YP_002466106.1| - 4.6 7.4 8.8 4.9 7.3 0.8 2.3 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fae PF08714.6 gi|219851675|ref|YP_002466107.1| - 2.4e-65 219.1 0.0 4.9e-65 218.1 0.0 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|219851675|ref|YP_002466107.1| - 7.3e-24 84.4 3.0 2.1e-23 82.9 2.1 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|219851675|ref|YP_002466107.1| - 9.1e-05 21.8 1.6 0.0051 16.0 0.2 2.3 2 0 0 2 2 2 2 PcrB family Ribul_P_3_epim PF00834.14 gi|219851675|ref|YP_002466107.1| - 0.0034 16.5 1.6 0.026 13.6 1.1 2.2 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|219851675|ref|YP_002466107.1| - 0.0053 16.2 0.5 0.0053 16.2 0.4 1.6 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|219851675|ref|YP_002466107.1| - 0.0074 15.1 1.2 0.0077 15.1 0.2 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase RNA_binding PF01877.12 gi|219851675|ref|YP_002466107.1| - 0.061 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA binding Beta_helix PF13229.1 gi|219851676|ref|YP_002466108.1| - 1.7e-17 63.6 20.0 1.5e-11 44.3 5.2 2.4 1 1 1 2 2 2 2 Right handed beta helix region Abhydrolase_6 PF12697.2 gi|219851676|ref|YP_002466108.1| - 1.5e-16 60.9 1.7 2.5e-16 60.2 1.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family NosD PF05048.8 gi|219851676|ref|YP_002466108.1| - 1.9e-16 59.9 11.0 1.2e-15 57.3 7.7 1.9 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Abhydrolase_1 PF00561.15 gi|219851676|ref|YP_002466108.1| - 0.00021 20.9 0.0 0.00068 19.2 0.0 1.8 2 0 0 2 2 2 1 alpha/beta hydrolase fold Ndr PF03096.9 gi|219851676|ref|YP_002466108.1| - 0.0021 16.5 0.3 0.01 14.3 0.0 2.2 4 0 0 4 4 4 1 Ndr family DEAD PF00270.24 gi|219851679|ref|YP_002466111.1| - 1.6e-47 161.1 0.1 2.5e-46 157.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase DbpA PF03880.10 gi|219851679|ref|YP_002466111.1| - 4.2e-28 96.8 0.2 9.5e-28 95.6 0.1 1.7 1 0 0 1 1 1 1 DbpA RNA binding domain Helicase_C PF00271.26 gi|219851679|ref|YP_002466111.1| - 7.5e-26 89.8 0.2 2.8e-25 87.9 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain CMS1 PF14617.1 gi|219851679|ref|YP_002466111.1| - 0.012 14.6 0.6 0.023 13.7 0.0 1.7 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit RRM_5 PF13893.1 gi|219851679|ref|YP_002466111.1| - 0.052 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Helicase_C_2 PF13307.1 gi|219851679|ref|YP_002466111.1| - 0.09 12.7 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Helicase C-terminal domain FAD_binding_3 PF01494.14 gi|219851681|ref|YP_002466113.1| - 5.5e-14 51.9 2.6 3e-07 29.8 0.5 3.1 2 1 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.9 gi|219851681|ref|YP_002466113.1| - 8e-08 31.3 0.2 0.00013 20.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|219851681|ref|YP_002466113.1| - 1.3e-07 30.8 0.4 0.0014 17.5 0.1 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|219851681|ref|YP_002466113.1| - 2.2e-07 30.3 4.3 3.5e-07 29.6 3.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|219851681|ref|YP_002466113.1| - 1.6e-06 28.1 0.3 2.4e-06 27.5 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|219851681|ref|YP_002466113.1| - 2.3e-06 26.3 0.8 3.2e-06 25.8 0.5 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|219851681|ref|YP_002466113.1| - 6.6e-06 25.2 4.0 1e-05 24.5 2.7 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|219851681|ref|YP_002466113.1| - 3.4e-05 22.9 4.1 0.00061 18.7 1.3 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|219851681|ref|YP_002466113.1| - 3.7e-05 22.9 0.1 5.6e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|219851681|ref|YP_002466113.1| - 0.00011 22.1 1.1 0.00028 20.8 0.8 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|219851681|ref|YP_002466113.1| - 0.00014 20.8 3.9 0.00016 20.6 2.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|219851681|ref|YP_002466113.1| - 0.023 14.7 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|219851681|ref|YP_002466113.1| - 0.057 13.2 0.2 0.16 11.7 0.1 1.8 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|219851681|ref|YP_002466113.1| - 0.15 11.7 1.6 0.21 11.2 0.4 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDGLE PF13190.1 gi|219851682|ref|YP_002466114.1| - 5e-16 58.1 0.6 5.9e-16 57.9 0.4 1.1 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|219851682|ref|YP_002466114.1| - 0.0068 15.9 0.2 0.0091 15.5 0.1 1.2 1 0 0 1 1 1 1 Yip1 domain DUF4064 PF13273.1 gi|219851682|ref|YP_002466114.1| - 0.06 13.4 1.4 0.19 11.8 1.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) FixH PF05751.6 gi|219851682|ref|YP_002466114.1| - 0.21 11.3 0.5 0.35 10.6 0.4 1.2 1 0 0 1 1 1 0 FixH ABC_tran PF00005.22 gi|219851683|ref|YP_002466115.1| - 1.9e-30 105.9 0.0 2.6e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851683|ref|YP_002466115.1| - 5e-14 52.9 0.5 3.1e-09 37.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219851683|ref|YP_002466115.1| - 3.3e-06 26.4 0.0 7e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219851683|ref|YP_002466115.1| - 4.7e-06 25.9 0.0 0.00063 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|219851683|ref|YP_002466115.1| - 0.00043 19.7 0.0 0.0008 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219851683|ref|YP_002466115.1| - 0.00085 19.7 0.0 0.0012 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain G-alpha PF00503.15 gi|219851683|ref|YP_002466115.1| - 0.027 13.1 0.0 0.032 12.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.1 gi|219851683|ref|YP_002466115.1| - 0.035 14.2 0.1 0.23 11.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|219851683|ref|YP_002466115.1| - 0.036 13.9 0.1 0.5 10.3 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|219851683|ref|YP_002466115.1| - 0.046 13.1 0.2 4.2 6.7 0.1 2.2 1 1 1 2 2 2 0 AAA-like domain Miro PF08477.8 gi|219851683|ref|YP_002466115.1| - 0.052 14.0 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_16 PF13191.1 gi|219851683|ref|YP_002466115.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|219851683|ref|YP_002466115.1| - 0.15 11.2 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CbiQ PF02361.11 gi|219851684|ref|YP_002466116.1| - 8.6e-34 117.0 13.4 8.6e-34 117.0 9.3 1.3 2 0 0 2 2 2 1 Cobalt transport protein DNA_gyraseB PF00204.20 gi|219851686|ref|YP_002466118.1| - 2.1e-60 202.8 0.3 3.5e-60 202.1 0.2 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|219851686|ref|YP_002466118.1| - 3.8e-29 100.2 0.1 7.2e-29 99.3 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|219851686|ref|YP_002466118.1| - 6.5e-26 90.2 0.0 1.6e-25 88.9 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|219851686|ref|YP_002466118.1| - 6e-15 54.9 0.0 1.6e-14 53.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|219851686|ref|YP_002466118.1| - 3.1e-05 23.6 0.1 7.4e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clostridium_P47 PF06597.6 gi|219851686|ref|YP_002466118.1| - 0.086 11.3 0.1 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 Clostridium P-47 protein DNA_topoisoIV PF00521.15 gi|219851687|ref|YP_002466119.1| - 1.5e-152 508.3 0.0 2.8e-152 507.4 0.0 1.4 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|219851687|ref|YP_002466119.1| - 4.4e-63 208.3 6.9 2.2e-14 52.4 0.7 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller UPF0047 PF01894.12 gi|219851688|ref|YP_002466120.1| - 1.9e-31 108.3 0.0 2.2e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 MASE1 PF05231.9 gi|219851689|ref|YP_002466121.1| - 3.6e-07 29.4 30.7 4.9e-07 29.0 21.2 1.1 1 0 0 1 1 1 1 MASE1 MFS_1 PF07690.11 gi|219851690|ref|YP_002466122.1| - 1e-57 195.4 55.2 5e-57 193.2 36.9 2.2 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219851690|ref|YP_002466122.1| - 4.2e-14 51.9 42.0 7.5e-08 31.3 10.7 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|219851690|ref|YP_002466122.1| - 4.1e-07 28.7 48.3 0.00045 18.7 16.6 2.6 2 1 0 2 2 2 2 MFS/sugar transport protein OATP PF03137.15 gi|219851690|ref|YP_002466122.1| - 0.0021 16.2 34.2 0.028 12.5 4.7 3.4 2 2 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.8 gi|219851690|ref|YP_002466122.1| - 0.93 7.5 31.6 0.0052 14.9 8.3 2.5 3 0 0 3 3 3 0 Transmembrane secretion effector Abhydrolase_6 PF12697.2 gi|219851691|ref|YP_002466123.1| - 1e-25 90.9 0.1 1.6e-25 90.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|219851691|ref|YP_002466123.1| - 3.1e-17 62.8 0.7 6.5e-14 52.0 0.2 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|219851691|ref|YP_002466123.1| - 1.1e-13 51.1 0.3 2.3e-13 50.1 0.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|219851691|ref|YP_002466123.1| - 4.6e-07 29.5 0.0 9.7e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|219851691|ref|YP_002466123.1| - 0.0083 14.6 0.0 0.015 13.8 0.0 1.3 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|219851691|ref|YP_002466123.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein PAS_9 PF13426.1 gi|219851692|ref|YP_002466124.1| - 0.051 13.9 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 PAS domain PAS_4 PF08448.5 gi|219851692|ref|YP_002466124.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 PAS fold zf-C3HC4 PF00097.20 gi|219851692|ref|YP_002466124.1| - 3.1 7.5 8.8 0.98 9.1 0.1 2.8 2 2 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) PAS_4 PF08448.5 gi|219851693|ref|YP_002466125.1| - 4.3e-17 62.1 0.1 9.1e-17 61.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|219851693|ref|YP_002466125.1| - 1.1e-16 61.6 0.0 5e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.21 gi|219851693|ref|YP_002466125.1| - 1.4e-12 47.3 0.1 2.8e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219851693|ref|YP_002466125.1| - 2.1e-11 44.0 0.0 4.8e-10 39.7 0.0 2.9 3 1 0 3 3 3 1 PAS domain PAS PF00989.19 gi|219851693|ref|YP_002466125.1| - 3.1e-06 26.9 0.0 1.2e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|219851693|ref|YP_002466125.1| - 8.1e-06 25.9 0.0 0.00026 21.0 0.0 2.8 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.1 gi|219851693|ref|YP_002466125.1| - 2.9e-05 24.2 0.0 0.0002 21.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|219851693|ref|YP_002466125.1| - 0.029 14.3 0.1 0.36 10.8 0.0 2.8 2 1 0 2 2 2 0 PAS fold PAS_8 PF13188.1 gi|219851693|ref|YP_002466125.1| - 0.033 14.0 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 0 PAS domain HATPase_c_5 PF14501.1 gi|219851693|ref|YP_002466125.1| - 0.15 11.8 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 GHKL domain MMPL PF03176.10 gi|219851694|ref|YP_002466126.1| - 5e-51 173.3 26.8 1.3e-27 96.3 2.6 2.5 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.14 gi|219851694|ref|YP_002466126.1| - 3.3e-09 34.8 26.1 2.1e-05 22.1 5.0 2.9 1 1 1 3 3 3 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|219851694|ref|YP_002466126.1| - 4.3e-08 32.7 7.5 4.3e-08 32.7 5.2 3.9 4 2 1 5 5 5 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|219851694|ref|YP_002466126.1| - 1.5e-06 27.5 11.6 1.5e-06 27.5 8.1 3.3 4 0 0 4 4 4 1 Protein export membrane protein Patched PF02460.13 gi|219851694|ref|YP_002466126.1| - 0.00079 17.4 32.7 0.0065 14.4 7.1 2.3 2 0 0 2 2 2 2 Patched family zf-ribbon_3 PF13248.1 gi|219851695|ref|YP_002466127.1| - 0.0011 18.0 1.4 0.0024 17.0 1.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DUF1610 PF07754.6 gi|219851695|ref|YP_002466127.1| - 0.0084 16.2 4.2 1.1 9.4 0.3 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|219851695|ref|YP_002466127.1| - 0.015 15.0 3.3 0.031 14.0 2.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|219851695|ref|YP_002466127.1| - 0.028 14.1 0.5 0.057 13.1 0.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RRN7 PF11781.3 gi|219851695|ref|YP_002466127.1| - 0.12 11.8 1.5 0.34 10.4 1.0 1.7 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|219851695|ref|YP_002466127.1| - 0.23 10.9 2.7 0.89 9.1 1.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|219851695|ref|YP_002466127.1| - 0.72 9.8 4.2 12 5.9 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|219851695|ref|YP_002466127.1| - 0.92 9.0 5.7 2.8 7.5 0.3 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|219851695|ref|YP_002466127.1| - 5.6 6.3 5.5 72 2.8 3.8 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0147 PF03685.8 gi|219851696|ref|YP_002466128.1| - 2.8e-36 123.2 1.9 3e-36 123.1 1.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) M11L PF11099.3 gi|219851696|ref|YP_002466128.1| - 0.019 14.7 0.3 0.021 14.5 0.2 1.0 1 0 0 1 1 1 0 Apoptosis regulator M11L like UPF0253 PF06786.7 gi|219851696|ref|YP_002466128.1| - 0.042 13.9 0.2 2.8 8.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.7 gi|219851697|ref|YP_002466129.1| - 7.6e-10 38.3 5.9 1.3e-09 37.6 4.1 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ERCC4 PF02732.10 gi|219851698|ref|YP_002466130.1| - 5.2e-23 81.3 0.0 1.7e-22 79.7 0.0 1.9 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|219851698|ref|YP_002466130.1| - 3e-21 75.6 0.0 2.4e-20 72.7 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|219851698|ref|YP_002466130.1| - 5.1e-19 67.9 0.0 1.7e-18 66.2 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|219851698|ref|YP_002466130.1| - 9.7e-15 54.8 0.0 4.8e-14 52.6 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|219851698|ref|YP_002466130.1| - 9.6e-11 41.6 0.0 3.6e-10 39.8 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|219851698|ref|YP_002466130.1| - 4.6e-09 36.0 0.1 1.7e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_RecD PF05127.9 gi|219851698|ref|YP_002466130.1| - 9.3e-06 25.3 0.0 0.0037 16.9 0.0 3.0 3 0 0 3 3 3 1 Helicase HHH PF00633.18 gi|219851698|ref|YP_002466130.1| - 0.00015 21.2 0.1 0.00042 19.8 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.11 gi|219851698|ref|YP_002466130.1| - 0.0038 16.4 0.0 0.008 15.4 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Flavi_DEAD PF07652.9 gi|219851698|ref|YP_002466130.1| - 0.013 15.2 0.0 7.3 6.3 0.0 2.7 2 0 0 2 2 2 0 Flavivirus DEAD domain HHH_3 PF12836.2 gi|219851698|ref|YP_002466130.1| - 0.095 12.6 0.1 0.3 11.0 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif tRNA-synt_2b PF00587.20 gi|219851699|ref|YP_002466131.1| - 4.2e-60 202.2 0.0 8.3e-60 201.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|219851699|ref|YP_002466131.1| - 1.5e-21 76.1 0.0 3.6e-21 74.9 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain zf-H2C2_2 PF13465.1 gi|219851699|ref|YP_002466131.1| - 3.6 8.0 5.7 12 6.4 0.5 2.6 2 0 0 2 2 2 0 Zinc-finger double domain HTH_23 PF13384.1 gi|219851700|ref|YP_002466132.1| - 0.00016 21.2 0.0 0.056 13.1 0.0 2.7 2 1 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|219851700|ref|YP_002466132.1| - 0.0006 18.9 0.0 0.0014 17.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|219851700|ref|YP_002466132.1| - 0.00087 18.8 0.0 0.02 14.4 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|219851700|ref|YP_002466132.1| - 0.0015 18.0 0.0 0.021 14.4 0.0 2.4 1 1 1 2 2 2 1 PucR C-terminal helix-turn-helix domain GerE PF00196.14 gi|219851700|ref|YP_002466132.1| - 0.0024 17.1 0.0 0.076 12.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|219851700|ref|YP_002466132.1| - 0.011 15.6 0.0 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Transposase MerR PF00376.18 gi|219851700|ref|YP_002466132.1| - 0.019 14.5 0.0 0.058 12.9 0.0 1.9 1 0 0 1 1 1 0 MerR family regulatory protein HTH_10 PF04967.7 gi|219851700|ref|YP_002466132.1| - 0.019 14.5 0.0 0.14 11.7 0.0 2.5 3 0 0 3 3 3 0 HTH DNA binding domain HTH_24 PF13412.1 gi|219851700|ref|YP_002466132.1| - 0.035 13.4 0.1 0.34 10.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|219851700|ref|YP_002466132.1| - 0.12 12.3 0.0 0.7 9.9 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain Lactamase_B_3 PF13483.1 gi|219851701|ref|YP_002466133.1| - 2e-25 89.4 0.0 2.6e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|219851701|ref|YP_002466133.1| - 7.9e-17 61.4 0.1 1.3e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|219851701|ref|YP_002466133.1| - 2.8e-07 30.3 2.6 7.6e-07 28.9 1.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CBM_15 PF03426.9 gi|219851701|ref|YP_002466133.1| - 0.1 11.9 1.6 0.36 10.1 0.2 2.1 1 1 1 2 2 2 0 Carbohydrate binding domain (family 15) DZR PF12773.2 gi|219851702|ref|YP_002466134.1| - 0.00016 21.3 0.4 0.00026 20.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|219851702|ref|YP_002466134.1| - 0.00071 18.9 1.5 0.0012 18.2 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219851702|ref|YP_002466134.1| - 0.0071 15.5 1.6 0.013 14.7 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Flavokinase PF01687.12 gi|219851702|ref|YP_002466134.1| - 0.089 12.6 0.3 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 Riboflavin kinase UPF0547 PF10571.4 gi|219851702|ref|YP_002466134.1| - 0.55 9.9 4.0 2.6 7.8 2.8 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 CARDB PF07705.6 gi|219851702|ref|YP_002466134.1| - 1.1 9.2 6.2 4.2 7.4 0.1 2.9 3 0 0 3 3 3 0 CARDB DUF202 PF02656.10 gi|219851703|ref|YP_002466135.1| - 8.8 6.6 11.8 1.5 9.0 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF202) MCPsignal PF00015.16 gi|219851705|ref|YP_002466137.1| - 6.8e-49 166.2 51.7 2.4e-47 161.2 18.7 4.5 3 1 2 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219851705|ref|YP_002466137.1| - 5.7e-16 58.5 0.0 3.2e-12 46.4 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|219851705|ref|YP_002466137.1| - 1.9e-12 47.4 0.2 1e-10 41.9 0.0 3.3 4 0 0 4 4 3 1 PAS domain PAS PF00989.19 gi|219851705|ref|YP_002466137.1| - 1.3e-07 31.3 0.0 0.00084 19.0 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219851705|ref|YP_002466137.1| - 7.2e-06 25.6 0.0 0.03 14.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|219851705|ref|YP_002466137.1| - 0.0028 17.9 0.0 0.23 11.7 0.0 3.7 3 0 0 3 3 2 1 PAS domain Ferritin PF00210.19 gi|219851705|ref|YP_002466137.1| - 0.028 14.1 5.5 0.1 12.3 0.1 3.5 3 0 0 3 3 3 0 Ferritin-like domain Syntaxin PF00804.20 gi|219851705|ref|YP_002466137.1| - 0.68 10.1 16.5 5.9 7.1 0.3 5.6 5 2 1 6 6 6 0 Syntaxin Sec34 PF04136.10 gi|219851705|ref|YP_002466137.1| - 1 9.0 4.5 2.5 7.7 0.1 3.7 5 0 0 5 5 5 0 Sec34-like family Muted PF14942.1 gi|219851705|ref|YP_002466137.1| - 1.2 9.0 6.2 2.4 8.0 0.2 3.8 4 0 0 4 4 4 0 Organelle biogenesis, Muted-like protein Laminin_II PF06009.7 gi|219851705|ref|YP_002466137.1| - 2 8.1 24.0 2 8.1 2.5 5.2 3 2 0 4 4 4 0 Laminin Domain II DUF948 PF06103.6 gi|219851705|ref|YP_002466137.1| - 2 8.2 18.6 0.88 9.4 0.6 5.7 4 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) Myosin_tail_1 PF01576.14 gi|219851705|ref|YP_002466137.1| - 2.3 5.8 8.9 0.64 7.6 2.5 2.2 1 1 1 2 2 2 0 Myosin tail RmuC PF02646.11 gi|219851705|ref|YP_002466137.1| - 3 6.5 11.2 0.45 9.3 0.8 3.6 3 1 0 3 3 3 0 RmuC family DUF2203 PF09969.4 gi|219851705|ref|YP_002466137.1| - 8.8 6.5 10.6 5.3 7.2 0.2 4.1 3 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) CheW PF01584.14 gi|219851706|ref|YP_002466138.1| - 1.1e-28 99.4 0.6 1.2e-28 99.3 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain PAS_9 PF13426.1 gi|219851707|ref|YP_002466139.1| - 1.3e-73 244.0 10.3 1.8e-11 44.3 0.0 8.2 9 0 0 9 9 8 7 PAS domain PAS PF00989.19 gi|219851707|ref|YP_002466139.1| - 3.3e-49 165.3 6.6 2.7e-11 43.2 0.0 7.6 7 0 0 7 7 7 6 PAS fold PAS_4 PF08448.5 gi|219851707|ref|YP_002466139.1| - 1.7e-47 160.0 2.0 3.8e-10 39.7 0.0 8.1 8 0 0 8 8 8 6 PAS fold PAS_8 PF13188.1 gi|219851707|ref|YP_002466139.1| - 7.6e-38 127.1 3.9 2.2e-06 27.2 0.0 6.9 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|219851707|ref|YP_002466139.1| - 4.7e-29 100.3 5.3 9.9e-06 25.5 0.0 8.6 8 0 0 8 8 8 4 PAS fold Response_reg PF00072.19 gi|219851707|ref|YP_002466139.1| - 8.6e-17 61.1 0.0 5.4e-16 58.5 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219851707|ref|YP_002466139.1| - 4.4e-13 48.9 0.5 1.7e-12 47.0 0.3 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|219851707|ref|YP_002466139.1| - 4.3e-06 26.9 0.0 0.48 10.7 0.0 5.2 5 0 0 5 5 5 1 PAS domain GAF PF01590.21 gi|219851707|ref|YP_002466139.1| - 9.4e-06 25.8 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|219851707|ref|YP_002466139.1| - 0.016 14.8 0.1 0.042 13.5 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|219851707|ref|YP_002466139.1| - 0.019 14.9 0.0 2.2 8.2 0.0 3.9 4 0 0 4 4 4 0 PAS domain PAS_7 PF12860.2 gi|219851707|ref|YP_002466139.1| - 0.076 13.0 16.2 0.52 10.3 0.0 5.8 7 0 0 7 7 7 0 PAS fold DHH PF01368.15 gi|219851710|ref|YP_002466142.1| - 2.5e-10 40.1 0.0 4.2e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|219851710|ref|YP_002466142.1| - 7.4e-07 28.9 0.1 1.7e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|219851710|ref|YP_002466142.1| - 0.00012 22.1 0.2 0.00035 20.5 0.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti-like PF12869.2 gi|219851710|ref|YP_002466142.1| - 0.079 12.4 0.2 0.18 11.2 0.2 1.5 1 0 0 1 1 1 0 tRNA_anti-like Ribosomal_L16 PF00252.13 gi|219851711|ref|YP_002466143.1| - 5.1e-33 113.6 0.8 5.9e-33 113.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ABC_tran PF00005.22 gi|219851712|ref|YP_002466144.1| - 2.2e-29 102.5 0.0 3.1e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851712|ref|YP_002466144.1| - 2.5e-09 37.5 0.0 5.6e-07 29.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|219851712|ref|YP_002466144.1| - 5e-07 29.9 0.1 9.8e-06 25.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219851712|ref|YP_002466144.1| - 1.9e-06 28.0 0.0 3.2e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|219851712|ref|YP_002466144.1| - 2.4e-06 27.5 0.3 8.6e-05 22.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|219851712|ref|YP_002466144.1| - 1.8e-05 23.9 0.0 3.5e-05 23.0 0.0 1.4 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|219851712|ref|YP_002466144.1| - 8.7e-05 21.7 0.0 0.18 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.10 gi|219851712|ref|YP_002466144.1| - 0.00033 19.4 0.0 0.00044 19.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|219851712|ref|YP_002466144.1| - 0.00042 20.4 0.1 0.0015 18.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219851712|ref|YP_002466144.1| - 0.00056 20.2 0.0 0.0032 17.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|219851712|ref|YP_002466144.1| - 0.00093 20.0 0.6 0.0016 19.2 0.3 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|219851712|ref|YP_002466144.1| - 0.00096 18.9 0.2 0.006 16.2 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase SMC_N PF02463.14 gi|219851712|ref|YP_002466144.1| - 0.0013 17.9 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|219851712|ref|YP_002466144.1| - 0.0023 17.3 0.4 0.013 14.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|219851712|ref|YP_002466144.1| - 0.005 16.5 0.1 0.014 15.0 0.0 1.8 2 0 0 2 2 1 1 NACHT domain AAA_23 PF13476.1 gi|219851712|ref|YP_002466144.1| - 0.0078 16.5 0.1 0.011 16.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|219851712|ref|YP_002466144.1| - 0.012 15.1 0.2 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|219851712|ref|YP_002466144.1| - 0.019 14.8 0.0 0.051 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|219851712|ref|YP_002466144.1| - 0.02 15.4 0.0 0.049 14.1 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein AAA_33 PF13671.1 gi|219851712|ref|YP_002466144.1| - 0.021 14.6 0.2 0.096 12.5 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|219851712|ref|YP_002466144.1| - 0.023 14.4 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain ABC_ATPase PF09818.4 gi|219851712|ref|YP_002466144.1| - 0.024 13.2 0.4 1.5 7.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.4 gi|219851712|ref|YP_002466144.1| - 0.025 14.0 0.2 0.07 12.6 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|219851712|ref|YP_002466144.1| - 0.031 13.7 0.1 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|219851712|ref|YP_002466144.1| - 0.031 13.7 0.0 0.07 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|219851712|ref|YP_002466144.1| - 0.034 14.0 0.1 0.12 12.2 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|219851712|ref|YP_002466144.1| - 0.041 13.6 0.4 0.1 12.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|219851712|ref|YP_002466144.1| - 0.05 13.7 0.0 0.095 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|219851712|ref|YP_002466144.1| - 0.061 13.0 0.2 2.5 7.8 0.1 2.2 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.12 gi|219851712|ref|YP_002466144.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|219851712|ref|YP_002466144.1| - 0.14 11.5 0.2 0.44 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|219851712|ref|YP_002466144.1| - 0.16 10.8 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|219851713|ref|YP_002466145.1| - 1.4e-21 76.9 16.8 1.4e-21 76.9 11.6 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.1 gi|219851714|ref|YP_002466146.1| - 5.7e-25 88.1 0.9 7.2e-12 45.2 0.0 2.2 2 0 0 2 2 2 2 NMT1-like family NMT1 PF09084.6 gi|219851714|ref|YP_002466146.1| - 0.016 14.7 0.0 2.2 7.8 0.0 2.4 2 0 0 2 2 2 0 NMT1/THI5 like Lyase_1 PF00206.15 gi|219851715|ref|YP_002466147.1| - 3.1e-54 184.3 0.0 4.2e-54 183.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|219851715|ref|YP_002466147.1| - 1.3e-14 54.0 0.1 4.3e-14 52.3 0.1 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.15 gi|219851716|ref|YP_002466148.1| - 5.1e-84 281.8 0.1 6.2e-84 281.5 0.0 1.0 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|219851717|ref|YP_002466149.1| - 1e-64 218.1 0.0 1.4e-64 217.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|219851717|ref|YP_002466149.1| - 2e-15 56.7 0.0 4.8e-15 55.5 0.0 1.7 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|219851717|ref|YP_002466149.1| - 1.5e-13 50.7 0.0 1e-12 48.0 0.0 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|219851717|ref|YP_002466149.1| - 2.8e-05 23.9 0.5 9.2e-05 22.3 0.1 2.0 2 0 0 2 2 2 1 Yqey-like protein Gly-rich_Ago1 PF12764.2 gi|219851718|ref|YP_002466150.1| - 6.1 7.5 7.8 4.6 7.9 3.9 1.8 2 0 0 2 2 2 0 Glycine-rich region of argonaut DUF1792 PF08759.6 gi|219851719|ref|YP_002466151.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1792) Nitroreductase PF00881.19 gi|219851720|ref|YP_002466152.1| - 4.8e-32 111.0 0.0 6.5e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family DUF555 PF04475.7 gi|219851721|ref|YP_002466153.1| - 9.8e-48 160.3 0.7 1.1e-47 160.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) PfkB PF00294.19 gi|219851722|ref|YP_002466154.1| - 1.6e-51 175.2 0.0 1.9e-51 175.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ATP_bind_4 PF01902.12 gi|219851723|ref|YP_002466155.1| - 8.5e-59 198.5 0.0 9.8e-59 198.3 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region DUF2070 PF09843.4 gi|219851724|ref|YP_002466156.1| - 4.4e-46 156.6 1.2 7.8e-46 155.7 0.8 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DENN PF02141.16 gi|219851724|ref|YP_002466156.1| - 0.017 14.8 0.0 0.23 11.1 0.0 2.4 3 0 0 3 3 3 0 DENN (AEX-3) domain Hemerythrin PF01814.18 gi|219851726|ref|YP_002466158.1| - 5.3e-19 68.6 1.5 5.9e-19 68.5 1.0 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Glyco_hydro_70 PF02324.11 gi|219851726|ref|YP_002466158.1| - 0.015 13.0 2.4 0.018 12.8 1.7 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 OAS1_C PF10421.4 gi|219851726|ref|YP_002466158.1| - 0.053 13.0 0.5 0.11 11.9 0.1 1.6 1 1 1 2 2 2 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus MFS_2 PF13347.1 gi|219851727|ref|YP_002466159.1| - 0.012 13.9 0.4 0.017 13.5 0.3 1.1 1 0 0 1 1 1 0 MFS/sugar transport protein PspB PF06667.7 gi|219851727|ref|YP_002466159.1| - 0.071 13.0 0.9 0.15 12.0 0.6 1.5 1 0 0 1 1 1 0 Phage shock protein B DUF3353 PF11833.3 gi|219851727|ref|YP_002466159.1| - 0.12 11.7 2.3 0.25 10.7 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF2874 PF11396.3 gi|219851727|ref|YP_002466159.1| - 0.32 11.0 4.1 0.23 11.4 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) SecE PF00584.15 gi|219851727|ref|YP_002466159.1| - 6.3 6.4 8.0 0.61 9.7 1.8 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF45 PF01863.12 gi|219851728|ref|YP_002466160.1| - 3.9e-22 79.0 0.1 4.5e-22 78.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|219851728|ref|YP_002466160.1| - 0.00039 20.3 0.1 0.00062 19.6 0.1 1.3 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|219851728|ref|YP_002466160.1| - 0.0045 16.6 0.3 0.0067 16.0 0.2 1.3 1 1 0 1 1 1 1 SprT-like family Peptidase_M56 PF05569.6 gi|219851728|ref|YP_002466160.1| - 0.093 11.6 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 HSDR_N PF04313.9 gi|219851729|ref|YP_002466161.1| - 8.4e-24 84.3 0.1 2.6e-23 82.7 0.1 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|219851729|ref|YP_002466161.1| - 4e-18 65.8 0.0 9.7e-18 64.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.3 gi|219851729|ref|YP_002466161.1| - 2.1e-05 23.6 2.2 0.026 13.5 0.7 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3387) DUF2431 PF10354.4 gi|219851729|ref|YP_002466161.1| - 0.16 11.8 2.4 0.18 11.7 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2431) Mrr_cat PF04471.7 gi|219851730|ref|YP_002466162.1| - 1.3e-22 79.7 0.0 2.4e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF2034 PF10356.4 gi|219851730|ref|YP_002466162.1| - 0.058 12.5 0.6 0.2 10.8 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2034) Methylase_S PF01420.14 gi|219851731|ref|YP_002466163.1| - 6.8e-23 81.4 0.0 8.8e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Methylase_S PF01420.14 gi|219851732|ref|YP_002466164.1| - 2.1e-08 34.2 0.0 2.7e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain SIR2_2 PF13289.1 gi|219851733|ref|YP_002466165.1| - 7.3e-09 35.6 1.0 2.6e-08 33.8 0.0 2.4 2 0 0 2 2 2 1 SIR2-like domain SIR2 PF02146.12 gi|219851733|ref|YP_002466165.1| - 0.00028 20.6 3.1 0.042 13.5 0.0 3.7 3 1 1 4 4 4 2 Sir2 family N6_Mtase PF02384.11 gi|219851734|ref|YP_002466166.1| - 6.5e-89 298.0 0.0 8.4e-89 297.7 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|219851734|ref|YP_002466166.1| - 3.3e-32 111.7 0.0 1.1e-31 110.0 0.0 1.9 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|219851734|ref|YP_002466166.1| - 7.4e-10 38.6 0.0 1.5e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|219851734|ref|YP_002466166.1| - 2.7e-07 30.6 0.0 5.7e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851734|ref|YP_002466166.1| - 0.12 11.9 0.0 0.43 10.1 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain UPF0150 PF03681.10 gi|219851736|ref|YP_002466168.1| - 3e-21 74.7 0.1 3.5e-21 74.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|219851736|ref|YP_002466168.1| - 0.0047 16.9 0.0 0.0053 16.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3832) YcfA PF07927.7 gi|219851737|ref|YP_002466169.1| - 2e-15 56.4 0.2 2.6e-15 56.0 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein RibD_C PF01872.12 gi|219851738|ref|YP_002466170.1| - 1e-15 57.8 0.0 1.6e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.14 gi|219851738|ref|YP_002466170.1| - 0.0016 18.0 0.0 0.0029 17.2 0.0 1.4 1 1 0 1 1 1 1 Dihydrofolate reductase DUF998 PF06197.8 gi|219851739|ref|YP_002466171.1| - 4.8e-38 130.3 19.3 5.8e-38 130.0 13.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Serinc PF03348.10 gi|219851739|ref|YP_002466171.1| - 0.13 10.9 0.0 0.21 10.2 0.0 1.4 1 1 0 1 1 1 0 Serine incorporator (Serinc) DUF1772 PF08592.6 gi|219851739|ref|YP_002466171.1| - 8.5 6.1 12.0 5.6 6.6 0.5 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF1772) TetR_N PF00440.18 gi|219851740|ref|YP_002466172.1| - 1.8e-15 56.2 0.1 3.3e-15 55.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF1492 PF07374.6 gi|219851740|ref|YP_002466172.1| - 0.002 18.1 0.8 0.31 11.1 0.1 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF1492) EcoEI_R_C PF08463.5 gi|219851740|ref|YP_002466172.1| - 0.0055 16.5 0.5 0.56 10.0 0.1 2.7 3 1 0 3 3 3 2 EcoEI R protein C-terminal DUF1366 PF07104.6 gi|219851740|ref|YP_002466172.1| - 0.087 12.4 0.3 0.21 11.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1366) LCM PF04072.9 gi|219851741|ref|YP_002466173.1| - 4.4e-44 150.2 0.0 5.6e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase LCM PF04072.9 gi|219851742|ref|YP_002466174.1| - 2e-45 154.5 0.0 2.9e-45 154.0 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Abhydrolase_6 PF12697.2 gi|219851743|ref|YP_002466175.1| - 3.6e-30 105.5 0.3 4.4e-30 105.2 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219851743|ref|YP_002466175.1| - 3.8e-14 52.6 0.2 3.1e-13 49.7 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|219851743|ref|YP_002466175.1| - 1.3e-12 47.7 0.8 3.2e-12 46.4 0.5 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.9 gi|219851743|ref|YP_002466175.1| - 8.2e-08 31.0 0.0 1.4e-07 30.3 0.0 1.3 1 1 0 1 1 1 1 Ndr family Thioesterase PF00975.15 gi|219851743|ref|YP_002466175.1| - 5.5e-06 26.7 0.2 6.7e-06 26.4 0.1 1.1 1 0 0 1 1 1 1 Thioesterase domain PGAP1 PF07819.8 gi|219851743|ref|YP_002466175.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.8 2 1 0 2 2 2 0 PGAP1-like protein FSH1 PF03959.8 gi|219851743|ref|YP_002466175.1| - 0.16 11.3 0.1 0.54 9.6 0.0 1.8 2 1 0 2 2 2 0 Serine hydrolase (FSH1) TrwB_AAD_bind PF10412.4 gi|219851744|ref|YP_002466176.1| - 0.037 12.6 0.1 0.048 12.2 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF1801 PF08818.6 gi|219851745|ref|YP_002466177.1| - 7.9e-22 77.2 0.1 1e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DU1801) DUF3420 PF11900.3 gi|219851745|ref|YP_002466177.1| - 0.024 14.7 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) Glyoxalase PF00903.20 gi|219851746|ref|YP_002466178.1| - 4.9e-13 49.1 0.0 5.9e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|219851746|ref|YP_002466178.1| - 2.2e-11 44.3 0.0 2.6e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|219851746|ref|YP_002466178.1| - 0.001 19.0 0.0 0.0016 18.3 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|219851746|ref|YP_002466178.1| - 0.11 12.3 0.0 0.47 10.3 0.0 1.8 1 1 1 2 2 2 0 Glyoxalase-like domain Mt_ATP-synt_D PF05873.7 gi|219851746|ref|YP_002466178.1| - 0.12 12.0 0.1 0.23 11.0 0.0 1.4 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) DUF1214 PF06742.6 gi|219851749|ref|YP_002466181.1| - 4.4e-28 97.7 1.1 5.1e-28 97.5 0.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1214) DUF1254 PF06863.7 gi|219851750|ref|YP_002466182.1| - 4.3e-31 107.4 0.1 5.5e-31 107.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) DUF1214 PF06742.6 gi|219851751|ref|YP_002466183.1| - 3.2e-27 95.0 0.1 4.5e-27 94.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF3112 PF11309.3 gi|219851751|ref|YP_002466183.1| - 0.0038 17.0 0.0 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3112) DUF1254 PF06863.7 gi|219851752|ref|YP_002466184.1| - 3.7e-32 110.8 2.6 5.4e-32 110.3 0.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) CarbpepA_inh PF02977.10 gi|219851753|ref|YP_002466185.1| - 6.6 6.4 11.3 0.65 9.6 0.4 3.3 3 0 0 3 3 3 0 Carboxypeptidase A inhibitor DUF2892 PF11127.3 gi|219851754|ref|YP_002466186.1| - 0.0042 16.8 6.3 0.0048 16.6 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF308 PF03729.8 gi|219851754|ref|YP_002466186.1| - 0.025 14.5 14.5 0.034 14.1 9.6 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) PIRT PF15099.1 gi|219851754|ref|YP_002466186.1| - 0.028 13.6 6.1 0.029 13.5 4.2 1.0 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF4225 PF13988.1 gi|219851754|ref|YP_002466186.1| - 0.033 13.6 4.7 0.035 13.5 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) IncA PF04156.9 gi|219851754|ref|YP_002466186.1| - 0.13 11.8 17.2 0.14 11.7 11.9 1.0 1 0 0 1 1 1 0 IncA protein DUF3487 PF11990.3 gi|219851754|ref|YP_002466186.1| - 0.31 10.4 6.9 0.34 10.3 4.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF1700 PF08006.6 gi|219851754|ref|YP_002466186.1| - 0.34 10.1 10.2 0.35 10.1 7.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) COPI_assoc PF08507.5 gi|219851754|ref|YP_002466186.1| - 0.93 9.1 11.8 1.2 8.7 8.1 1.2 1 0 0 1 1 1 0 COPI associated protein BCLP PF12304.3 gi|219851754|ref|YP_002466186.1| - 5.3 6.4 8.2 5.9 6.2 5.7 1.1 1 0 0 1 1 1 0 Beta-casein like protein DUF973 PF06157.6 gi|219851754|ref|YP_002466186.1| - 5.7 5.8 18.2 6.3 5.6 12.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) PGPGW PF09656.5 gi|219851754|ref|YP_002466186.1| - 9.4 5.6 16.9 1.5 8.1 2.2 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) 7TMR-DISM_7TM PF07695.6 gi|219851755|ref|YP_002466187.1| - 0.039 13.6 6.8 0.049 13.2 4.7 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF485 PF04341.7 gi|219851755|ref|YP_002466187.1| - 4.1 7.1 9.4 1.6 8.5 2.2 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF485 DUF2178 PF09946.4 gi|219851756|ref|YP_002466188.1| - 5.4e-16 58.3 7.2 9e-16 57.6 5.0 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3040 PF11239.3 gi|219851756|ref|YP_002466188.1| - 0.041 13.9 0.4 0.041 13.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3087 PF11286.3 gi|219851756|ref|YP_002466188.1| - 0.048 12.8 1.8 0.094 11.9 0.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) SPC12 PF06645.8 gi|219851756|ref|YP_002466188.1| - 0.17 11.7 10.9 1.4 8.7 0.8 2.4 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Pox_A9 PF04835.7 gi|219851756|ref|YP_002466188.1| - 0.26 11.2 3.2 0.31 10.9 0.1 2.6 3 0 0 3 3 3 0 A9 protein conserved region DUF1345 PF07077.6 gi|219851756|ref|YP_002466188.1| - 0.42 10.1 3.3 0.38 10.2 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1345) DUF872 PF05915.7 gi|219851756|ref|YP_002466188.1| - 0.58 10.0 5.1 0.39 10.5 0.2 2.1 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4013 PF13197.1 gi|219851756|ref|YP_002466188.1| - 1.4 8.1 12.0 0.27 10.5 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) BioY PF02632.9 gi|219851756|ref|YP_002466188.1| - 1.5 8.4 10.9 0.29 10.7 1.6 2.2 1 1 1 2 2 2 0 BioY family MFS_Mycoplasma PF07672.8 gi|219851756|ref|YP_002466188.1| - 5.4 6.1 11.8 2 7.4 0.8 2.1 1 1 1 2 2 2 0 Mycoplasma MFS transporter Tmemb_55A PF09788.4 gi|219851756|ref|YP_002466188.1| - 5.9 5.9 6.0 1 8.4 0.6 1.8 2 0 0 2 2 2 0 Transmembrane protein 55A DUF3975 PF13126.1 gi|219851756|ref|YP_002466188.1| - 9.8 6.4 6.7 2.8 8.1 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3975) HTH_19 PF12844.2 gi|219851757|ref|YP_002466189.1| - 1.6e-13 50.5 0.1 1.7e-13 50.3 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|219851757|ref|YP_002466189.1| - 2.6e-11 43.1 0.0 2.7e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|219851757|ref|YP_002466189.1| - 1.9e-06 27.9 0.0 2.2e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219851757|ref|YP_002466189.1| - 4.3e-05 23.6 0.0 4.8e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|219851757|ref|YP_002466189.1| - 0.00033 20.2 0.1 0.00041 19.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|219851757|ref|YP_002466189.1| - 0.0021 17.6 0.1 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_37 PF13744.1 gi|219851757|ref|YP_002466189.1| - 0.0042 16.8 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|219851757|ref|YP_002466189.1| - 0.0091 15.2 0.0 0.017 14.4 0.0 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|219851757|ref|YP_002466189.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|219851757|ref|YP_002466189.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.4 2 0 0 2 2 2 0 Homeodomain-like domain Grp1_Fun34_YaaH PF01184.14 gi|219851758|ref|YP_002466190.1| - 3.8e-47 160.3 19.6 4.5e-47 160.0 13.6 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Methyltransf_31 PF13847.1 gi|219851759|ref|YP_002466191.1| - 4.2e-26 91.3 0.0 6.3e-26 90.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851759|ref|YP_002466191.1| - 3.8e-25 88.1 0.0 6.7e-25 87.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851759|ref|YP_002466191.1| - 5.2e-21 75.0 0.0 7.3e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851759|ref|YP_002466191.1| - 9.2e-20 70.9 0.0 1.8e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851759|ref|YP_002466191.1| - 1.1e-19 71.0 0.0 2e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851759|ref|YP_002466191.1| - 4.5e-18 65.2 0.0 6.3e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|219851759|ref|YP_002466191.1| - 3.5e-16 59.4 0.0 6.1e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851759|ref|YP_002466191.1| - 7.8e-15 54.9 0.0 3.5e-14 52.8 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|219851759|ref|YP_002466191.1| - 1.5e-13 50.8 0.0 3.4e-13 49.6 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|219851759|ref|YP_002466191.1| - 2.1e-10 39.9 0.0 3.7e-10 39.1 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|219851759|ref|YP_002466191.1| - 3.9e-10 39.3 0.0 1.2e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain CMAS PF02353.15 gi|219851759|ref|YP_002466191.1| - 4.2e-08 32.6 0.0 6.6e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|219851759|ref|YP_002466191.1| - 7.4e-08 31.8 0.0 1.3e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|219851759|ref|YP_002466191.1| - 3.1e-07 29.9 0.0 5.5e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|219851759|ref|YP_002466191.1| - 2.2e-06 26.5 0.0 3.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Fibrillarin PF01269.12 gi|219851759|ref|YP_002466191.1| - 9.5e-06 24.6 0.0 1.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.12 gi|219851759|ref|YP_002466191.1| - 1.9e-05 23.8 0.0 3.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|219851759|ref|YP_002466191.1| - 2.6e-05 24.9 0.0 5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|219851759|ref|YP_002466191.1| - 4e-05 23.2 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase GCD14 PF08704.5 gi|219851759|ref|YP_002466191.1| - 0.00015 21.3 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.6 gi|219851759|ref|YP_002466191.1| - 0.0003 20.2 0.0 0.00045 19.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|219851759|ref|YP_002466191.1| - 0.00069 19.3 0.0 0.0017 18.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|219851759|ref|YP_002466191.1| - 0.00071 19.2 0.0 0.047 13.3 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.14 gi|219851759|ref|YP_002466191.1| - 0.0019 18.2 0.0 0.0043 17.0 0.0 1.8 1 1 0 1 1 1 1 FtsJ-like methyltransferase Pox_MCEL PF03291.11 gi|219851759|ref|YP_002466191.1| - 0.0026 16.7 0.1 1.7 7.4 0.0 2.3 2 0 0 2 2 2 2 mRNA capping enzyme RrnaAD PF00398.15 gi|219851759|ref|YP_002466191.1| - 0.003 16.6 0.0 0.0051 15.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|219851759|ref|YP_002466191.1| - 0.019 14.4 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TrkA_N PF02254.13 gi|219851759|ref|YP_002466191.1| - 0.023 14.6 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain ADH_zinc_N PF00107.21 gi|219851759|ref|YP_002466191.1| - 0.039 13.5 0.0 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase FmrO PF07091.6 gi|219851759|ref|YP_002466191.1| - 0.095 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N2227 PF07942.7 gi|219851759|ref|YP_002466191.1| - 0.096 11.6 0.2 0.87 8.4 0.0 2.0 2 0 0 2 2 2 0 N2227-like protein TehB PF03848.9 gi|219851759|ref|YP_002466191.1| - 0.096 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_PK PF05891.7 gi|219851759|ref|YP_002466191.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase ABC2_membrane PF01061.19 gi|219851760|ref|YP_002466192.1| - 3.3e-42 144.0 20.9 3.3e-42 144.0 14.5 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219851760|ref|YP_002466192.1| - 1.2e-18 67.3 27.4 1.2e-18 67.3 19.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219851760|ref|YP_002466192.1| - 7e-06 25.0 21.4 3.2e-05 22.9 14.8 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|219851761|ref|YP_002466193.1| - 1.6e-30 106.1 0.0 2.8e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851761|ref|YP_002466193.1| - 3.6e-13 50.1 0.6 1.8e-10 41.2 0.4 2.4 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|219851761|ref|YP_002466193.1| - 3.4e-05 24.2 0.0 8.3e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|219851761|ref|YP_002466193.1| - 4e-05 22.8 0.1 0.0035 16.4 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|219851761|ref|YP_002466193.1| - 9.7e-05 21.8 0.1 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219851761|ref|YP_002466193.1| - 0.00036 20.9 0.5 0.00067 20.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|219851761|ref|YP_002466193.1| - 0.0014 17.8 0.1 1 8.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|219851761|ref|YP_002466193.1| - 0.013 14.8 0.1 0.039 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|219851761|ref|YP_002466193.1| - 0.014 14.5 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|219851761|ref|YP_002466193.1| - 0.022 14.6 0.1 1.5 8.6 0.0 3.0 3 1 0 4 4 4 0 AAA domain AAA_22 PF13401.1 gi|219851761|ref|YP_002466193.1| - 0.084 13.0 0.2 0.3 11.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|219851761|ref|YP_002466193.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|219851761|ref|YP_002466193.1| - 0.11 12.7 0.0 1.3 9.2 0.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219851761|ref|YP_002466193.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain PK_C PF02887.11 gi|219851762|ref|YP_002466194.1| - 4.4e-09 35.9 0.4 5.5e-09 35.5 0.3 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain End_beta_barrel PF12195.3 gi|219851762|ref|YP_002466194.1| - 0.055 13.1 0.2 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 Beta barrel domain of bacteriophage endosialidase AAA_19 PF13245.1 gi|219851762|ref|YP_002466194.1| - 0.2 11.4 1.9 0.36 10.6 0.2 2.1 2 1 0 2 2 2 0 Part of AAA domain Methyltransf_11 PF08241.7 gi|219851763|ref|YP_002466195.1| - 1.4e-20 73.5 0.0 2.5e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851763|ref|YP_002466195.1| - 4.8e-19 68.6 0.0 7.2e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851763|ref|YP_002466195.1| - 6.7e-19 67.9 0.0 8.7e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851763|ref|YP_002466195.1| - 1.2e-15 57.7 0.0 2.2e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851763|ref|YP_002466195.1| - 2.5e-14 53.7 0.0 4.5e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851763|ref|YP_002466195.1| - 6.9e-11 42.2 0.0 1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851763|ref|YP_002466195.1| - 1.6e-10 41.2 0.0 3e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851763|ref|YP_002466195.1| - 1.9e-10 40.2 0.0 2.9e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|219851763|ref|YP_002466195.1| - 1.1e-09 37.8 0.0 1.7e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|219851763|ref|YP_002466195.1| - 2e-07 30.5 0.0 3.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|219851763|ref|YP_002466195.1| - 2.7e-06 26.6 0.0 4.6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|219851763|ref|YP_002466195.1| - 2.9e-06 26.9 0.0 4.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.11 gi|219851763|ref|YP_002466195.1| - 2.2e-05 23.0 0.0 0.0014 17.0 0.0 2.1 1 1 1 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Fibrillarin PF01269.12 gi|219851763|ref|YP_002466195.1| - 0.00012 21.0 0.0 0.00021 20.3 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_9 PF08003.6 gi|219851763|ref|YP_002466195.1| - 0.0065 15.2 0.0 0.0098 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DOT1 PF08123.8 gi|219851763|ref|YP_002466195.1| - 0.016 14.5 0.0 0.035 13.4 0.0 1.6 1 1 0 1 1 1 0 Histone methylation protein DOT1 GCD14 PF08704.5 gi|219851763|ref|YP_002466195.1| - 0.022 14.2 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.1 gi|219851763|ref|YP_002466195.1| - 0.042 13.5 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|219851763|ref|YP_002466195.1| - 0.043 13.8 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 FtsJ-like methyltransferase HhH-GPD PF00730.20 gi|219851763|ref|YP_002466195.1| - 0.058 13.6 0.0 0.2 11.9 0.0 1.9 2 0 0 2 2 1 0 HhH-GPD superfamily base excision DNA repair protein PrmA PF06325.8 gi|219851763|ref|YP_002466195.1| - 0.061 12.4 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) N6_N4_Mtase PF01555.13 gi|219851763|ref|YP_002466195.1| - 0.065 12.7 0.0 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Nol1_Nop2_Fmu PF01189.12 gi|219851763|ref|YP_002466195.1| - 0.078 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_8 PF05148.10 gi|219851763|ref|YP_002466195.1| - 0.16 11.5 0.0 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_31 PF13847.1 gi|219851764|ref|YP_002466196.1| - 8.8e-21 74.0 0.0 1.3e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851764|ref|YP_002466196.1| - 1.1e-20 73.9 0.0 6.2e-20 71.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851764|ref|YP_002466196.1| - 4.8e-20 71.9 0.0 6.5e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851764|ref|YP_002466196.1| - 1.1e-17 64.3 0.0 2.8e-17 62.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851764|ref|YP_002466196.1| - 1.2e-13 51.2 0.0 3.3e-13 49.8 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851764|ref|YP_002466196.1| - 3.2e-13 49.3 0.0 6.4e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|219851764|ref|YP_002466196.1| - 3.8e-13 49.9 0.0 8.3e-13 48.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219851764|ref|YP_002466196.1| - 9.5e-10 38.5 0.0 1.3e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|219851764|ref|YP_002466196.1| - 1.8e-09 37.2 0.0 2.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|219851764|ref|YP_002466196.1| - 2.4e-08 33.4 0.0 3.5e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|219851764|ref|YP_002466196.1| - 1.3e-07 31.1 0.0 2.3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|219851764|ref|YP_002466196.1| - 1.4e-05 24.7 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|219851764|ref|YP_002466196.1| - 0.00029 20.2 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_PK PF05891.7 gi|219851764|ref|YP_002466196.1| - 0.0036 16.6 0.0 0.0053 16.0 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase DOT1 PF08123.8 gi|219851764|ref|YP_002466196.1| - 0.0079 15.5 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_9 PF08003.6 gi|219851764|ref|YP_002466196.1| - 0.0098 14.6 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|219851764|ref|YP_002466196.1| - 0.029 12.7 0.0 0.084 11.1 0.0 1.5 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_28 PF02636.12 gi|219851764|ref|YP_002466196.1| - 0.047 13.0 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|219851764|ref|YP_002466196.1| - 0.063 12.3 0.0 0.087 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MFS_1 PF07690.11 gi|219851765|ref|YP_002466197.1| - 2.3e-27 95.6 63.8 2.2e-15 56.2 21.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|219851765|ref|YP_002466197.1| - 0.00077 17.6 6.8 0.00077 17.6 4.7 2.7 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.8 gi|219851765|ref|YP_002466197.1| - 0.9 7.5 18.5 2.5 6.1 11.7 2.3 1 1 0 1 1 1 0 Transmembrane secretion effector ABC_tran PF00005.22 gi|219851766|ref|YP_002466198.1| - 2.6e-31 108.7 0.0 4.1e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851766|ref|YP_002466198.1| - 8.7e-15 55.4 0.0 6.1e-08 32.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219851766|ref|YP_002466198.1| - 5.4e-07 29.0 0.1 0.0046 16.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219851766|ref|YP_002466198.1| - 3.1e-06 26.4 0.0 0.0012 18.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|219851766|ref|YP_002466198.1| - 8.3e-06 25.9 0.0 1.6e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|219851766|ref|YP_002466198.1| - 0.00048 20.0 0.1 0.096 12.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|219851766|ref|YP_002466198.1| - 0.00056 19.3 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219851766|ref|YP_002466198.1| - 0.0019 17.3 0.0 0.004 16.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|219851766|ref|YP_002466198.1| - 0.0023 18.1 0.5 0.03 14.5 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|219851766|ref|YP_002466198.1| - 0.0026 17.8 0.4 0.0092 16.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|219851766|ref|YP_002466198.1| - 0.0036 16.7 0.0 0.024 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|219851766|ref|YP_002466198.1| - 0.0074 16.0 0.8 0.018 14.7 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase AAA_23 PF13476.1 gi|219851766|ref|YP_002466198.1| - 0.009 16.3 0.8 0.036 14.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|219851766|ref|YP_002466198.1| - 0.014 14.0 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|219851766|ref|YP_002466198.1| - 0.038 14.7 1.0 0.18 12.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|219851766|ref|YP_002466198.1| - 0.074 12.9 0.1 0.3 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|219851766|ref|YP_002466198.1| - 0.1 12.2 0.1 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|219851766|ref|YP_002466198.1| - 0.12 12.3 0.3 0.45 10.4 0.2 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|219851766|ref|YP_002466198.1| - 0.13 12.7 0.0 0.32 11.5 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein Methyltransf_12 PF08242.7 gi|219851767|ref|YP_002466199.1| - 1.4e-09 38.3 0.0 2.4e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851767|ref|YP_002466199.1| - 7.9e-08 32.0 0.0 1.3e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851767|ref|YP_002466199.1| - 8.5e-08 32.5 0.0 1.3e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851767|ref|YP_002466199.1| - 8.5e-08 32.0 0.0 1.7e-06 27.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851767|ref|YP_002466199.1| - 1.1e-07 32.3 0.0 2.9e-07 31.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851767|ref|YP_002466199.1| - 1.3e-07 31.8 0.0 5.4e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851767|ref|YP_002466199.1| - 4.7e-07 29.1 0.0 6.4e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family P-mevalo_kinase PF04275.9 gi|219851767|ref|YP_002466199.1| - 0.025 14.3 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphomevalonate kinase Methyltransf_28 PF02636.12 gi|219851767|ref|YP_002466199.1| - 0.08 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF3419 PF11899.3 gi|219851767|ref|YP_002466199.1| - 0.089 11.4 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) NMT1 PF09084.6 gi|219851768|ref|YP_002466200.1| - 1.7e-27 96.4 0.3 5e-27 94.8 0.2 1.7 2 0 0 2 2 2 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|219851768|ref|YP_002466200.1| - 5.1e-15 55.5 0.0 8.1e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|219851768|ref|YP_002466200.1| - 1.2e-05 24.6 0.1 2.1e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|219851768|ref|YP_002466200.1| - 0.0038 16.6 0.3 0.0081 15.5 0.2 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HGD-D PF06050.8 gi|219851769|ref|YP_002466201.1| - 2.7e-31 108.6 0.0 1e-30 106.7 0.0 1.8 1 1 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Methyltransf_11 PF08241.7 gi|219851770|ref|YP_002466202.1| - 1.2e-20 73.7 0.0 2.2e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219851770|ref|YP_002466202.1| - 6.7e-20 71.2 0.0 9e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851770|ref|YP_002466202.1| - 1.4e-18 66.8 0.0 3.4e-18 65.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|219851770|ref|YP_002466202.1| - 1.9e-16 60.3 0.0 3.2e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851770|ref|YP_002466202.1| - 9.5e-16 57.9 0.0 1.4e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851770|ref|YP_002466202.1| - 2.5e-15 57.0 0.0 5.1e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851770|ref|YP_002466202.1| - 5.5e-11 42.7 0.0 9.7e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219851770|ref|YP_002466202.1| - 6e-10 39.0 0.0 1e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|219851770|ref|YP_002466202.1| - 1.2e-09 38.2 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219851770|ref|YP_002466202.1| - 9.8e-07 28.3 0.0 1.6e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|219851770|ref|YP_002466202.1| - 1.8e-05 24.0 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|219851770|ref|YP_002466202.1| - 0.00012 21.1 0.0 0.00028 19.9 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_3 PF01596.12 gi|219851770|ref|YP_002466202.1| - 0.00046 19.2 0.0 0.00068 18.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|219851770|ref|YP_002466202.1| - 0.00051 19.6 0.0 0.00079 18.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit GidB PF02527.10 gi|219851770|ref|YP_002466202.1| - 0.0039 16.3 0.1 0.0096 15.0 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_8 PF05148.10 gi|219851770|ref|YP_002466202.1| - 0.0041 16.7 0.0 0.098 12.2 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase PrmA PF06325.8 gi|219851770|ref|YP_002466202.1| - 0.0055 15.8 0.0 0.011 14.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|219851770|ref|YP_002466202.1| - 0.008 16.9 0.0 0.014 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|219851770|ref|YP_002466202.1| - 0.0099 14.8 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin DUF3419 PF11899.3 gi|219851770|ref|YP_002466202.1| - 0.012 14.3 0.0 1.3 7.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3419) Crinivirus_P26 PF07416.6 gi|219851770|ref|YP_002466202.1| - 0.077 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Crinivirus P26 protein RrnaAD PF00398.15 gi|219851770|ref|YP_002466202.1| - 0.079 11.9 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HGD-D PF06050.8 gi|219851771|ref|YP_002466203.1| - 2.7e-30 105.3 0.0 7.3e-30 103.9 0.0 1.7 1 1 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component YvrJ PF12841.2 gi|219851771|ref|YP_002466203.1| - 0.058 12.6 1.1 1.9 7.8 0.1 2.7 2 0 0 2 2 2 0 YvrJ protein family TusA PF01206.12 gi|219851772|ref|YP_002466204.1| - 6.6e-21 73.6 0.1 7.4e-21 73.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|219851772|ref|YP_002466204.1| - 0.019 14.5 0.1 0.053 13.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Antitoxin-MazE PF04014.13 gi|219851772|ref|YP_002466204.1| - 0.057 13.1 0.9 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE DUF2674 PF10879.3 gi|219851772|ref|YP_002466204.1| - 0.077 12.7 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2674) NIR_SIR PF01077.17 gi|219851773|ref|YP_002466205.1| - 1.2e-33 115.7 0.1 2.9e-33 114.4 0.1 1.6 1 1 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|219851773|ref|YP_002466205.1| - 9.6e-21 73.1 0.2 1.6e-20 72.4 0.1 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_10 PF13237.1 gi|219851773|ref|YP_002466205.1| - 1.9e-09 37.1 8.2 1.9e-09 37.1 5.7 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219851773|ref|YP_002466205.1| - 4.5e-09 35.5 11.2 1.5e-05 24.3 2.8 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851773|ref|YP_002466205.1| - 5.1e-09 36.3 8.7 5.1e-09 36.3 6.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219851773|ref|YP_002466205.1| - 1.5e-07 31.3 7.0 0.00053 19.9 0.0 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219851773|ref|YP_002466205.1| - 6.4e-07 29.5 9.3 6.4e-07 29.5 6.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851773|ref|YP_002466205.1| - 9.1e-07 28.4 22.3 0.00038 20.1 3.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219851773|ref|YP_002466205.1| - 2.5e-06 28.1 12.8 0.00028 21.5 0.3 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|219851773|ref|YP_002466205.1| - 5.2e-06 26.2 10.2 0.0045 16.8 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851773|ref|YP_002466205.1| - 3.7e-05 23.4 11.2 0.00023 20.9 1.6 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219851773|ref|YP_002466205.1| - 0.00014 21.9 20.7 0.0024 18.0 1.0 3.0 4 0 0 4 4 2 2 4Fe-4S binding domain stn_TNFRSF12A PF12191.3 gi|219851773|ref|YP_002466205.1| - 0.00023 21.1 5.7 0.001 19.0 3.1 2.3 2 0 0 2 2 2 1 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Fer4_17 PF13534.1 gi|219851773|ref|YP_002466205.1| - 0.0019 18.4 12.2 0.23 11.8 0.9 2.7 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219851773|ref|YP_002466205.1| - 0.0022 18.3 13.6 0.84 10.0 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219851773|ref|YP_002466205.1| - 0.004 17.5 17.2 0.076 13.4 0.6 3.0 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851773|ref|YP_002466205.1| - 0.01 16.3 5.6 0.01 16.3 3.9 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219851773|ref|YP_002466205.1| - 0.016 15.7 8.1 1.8 9.1 0.3 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|219851773|ref|YP_002466205.1| - 0.021 14.6 6.2 0.36 10.7 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain PMBR PF09373.5 gi|219851773|ref|YP_002466205.1| - 0.18 11.8 0.6 0.44 10.5 0.5 1.6 1 0 0 1 1 1 0 Pseudomurein-binding repeat Prok-JAB PF14464.1 gi|219851774|ref|YP_002466206.1| - 3.9e-21 74.6 0.0 4.6e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|219851774|ref|YP_002466206.1| - 1.4e-07 31.1 0.0 2.1e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|219851774|ref|YP_002466206.1| - 0.011 15.6 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 ThiF PF00899.16 gi|219851775|ref|YP_002466207.1| - 7.8e-45 152.0 0.1 1e-44 151.6 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|219851775|ref|YP_002466207.1| - 1.7e-31 107.6 0.1 2.9e-31 106.9 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|219851775|ref|YP_002466207.1| - 0.0011 19.0 0.6 0.0044 17.1 0.4 1.9 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.19 gi|219851775|ref|YP_002466207.1| - 0.0045 15.9 0.2 0.0075 15.2 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|219851775|ref|YP_002466207.1| - 0.0078 15.6 0.1 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|219851775|ref|YP_002466207.1| - 0.01 14.8 0.6 0.014 14.4 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain Saccharop_dh PF03435.13 gi|219851775|ref|YP_002466207.1| - 0.034 13.1 0.1 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|219851775|ref|YP_002466207.1| - 0.054 12.8 0.1 0.076 12.3 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rad50_zn_hook PF04423.9 gi|219851775|ref|YP_002466207.1| - 0.13 11.7 0.3 0.26 10.7 0.2 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif Ldh_1_N PF00056.18 gi|219851775|ref|YP_002466207.1| - 0.13 12.0 0.9 0.27 11.0 0.5 1.7 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain FdhE PF04216.7 gi|219851775|ref|YP_002466207.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation 3HCDH_N PF02737.13 gi|219851775|ref|YP_002466207.1| - 0.15 11.7 0.1 0.37 10.4 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Cys_Met_Meta_PP PF01053.15 gi|219851776|ref|YP_002466208.1| - 8.8e-119 396.2 0.0 1e-118 396.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|219851776|ref|YP_002466208.1| - 5e-10 38.8 0.0 8.5e-10 38.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219851776|ref|YP_002466208.1| - 7.9e-10 38.2 0.2 4.5e-08 32.5 0.2 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|219851776|ref|YP_002466208.1| - 1.4e-06 27.2 0.0 6.5e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DUF539 PF04400.8 gi|219851776|ref|YP_002466208.1| - 0.087 12.3 0.1 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF539) ThiS PF02597.15 gi|219851777|ref|YP_002466209.1| - 2.9e-10 40.4 0.3 3.3e-10 40.2 0.2 1.0 1 0 0 1 1 1 1 ThiS family NMT1 PF09084.6 gi|219851778|ref|YP_002466210.1| - 9.8e-30 103.7 2.3 1.3e-29 103.3 1.6 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|219851778|ref|YP_002466210.1| - 5.3e-19 68.5 0.4 8.5e-19 67.9 0.3 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|219851778|ref|YP_002466210.1| - 5.6e-07 29.0 0.6 1.3e-06 27.8 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|219851778|ref|YP_002466210.1| - 1.8e-06 27.5 0.3 2.6e-06 27.0 0.2 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF4097 PF13349.1 gi|219851778|ref|YP_002466210.1| - 0.0033 16.9 1.3 0.0033 16.9 0.9 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4097) DUF3834 PF12916.2 gi|219851778|ref|YP_002466210.1| - 0.022 13.7 0.1 0.046 12.7 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3834) BPD_transp_1 PF00528.17 gi|219851779|ref|YP_002466211.1| - 9.1e-24 83.9 10.7 9.1e-24 83.9 7.4 2.0 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component HGD-D PF06050.8 gi|219851780|ref|YP_002466212.1| - 1.9e-30 105.8 0.0 5.9e-30 104.2 0.0 1.8 1 1 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component HGD-D PF06050.8 gi|219851781|ref|YP_002466213.1| - 6.9e-70 235.5 0.0 7.8e-70 235.4 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component BcrAD_BadFG PF01869.15 gi|219851782|ref|YP_002466214.1| - 3.4e-62 210.2 0.8 4e-62 209.9 0.6 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family CmcH_NodU PF02543.10 gi|219851782|ref|YP_002466214.1| - 0.00015 21.0 0.0 0.00027 20.1 0.0 1.4 1 0 0 1 1 1 1 Carbamoyltransferase FGGY_C PF02782.11 gi|219851782|ref|YP_002466214.1| - 0.00072 19.2 0.0 0.0033 17.0 0.0 2.0 3 0 0 3 3 3 1 FGGY family of carbohydrate kinases, C-terminal domain tRNA-Thr_ED PF08915.6 gi|219851783|ref|YP_002466215.1| - 8.5e-34 116.4 0.1 9.4e-34 116.3 0.1 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase KaiC PF06745.8 gi|219851783|ref|YP_002466215.1| - 0.00049 19.2 0.4 0.00059 19.0 0.3 1.1 1 0 0 1 1 1 1 KaiC tRNA-synt_1c_C PF03950.13 gi|219851783|ref|YP_002466215.1| - 0.015 14.9 0.3 0.018 14.7 0.2 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), anti-codon binding domain DNA_pol3_delta PF06144.8 gi|219851783|ref|YP_002466215.1| - 0.022 14.2 0.5 0.027 13.9 0.3 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DUF4612 PF15389.1 gi|219851783|ref|YP_002466215.1| - 0.024 15.2 0.3 0.031 14.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4612) Phage_connector PF05352.7 gi|219851783|ref|YP_002466215.1| - 0.035 13.3 0.2 0.043 13.0 0.1 1.2 1 0 0 1 1 1 0 Phage Connector (GP10) DUF2362 PF10154.4 gi|219851784|ref|YP_002466216.1| - 0.013 14.2 0.1 0.016 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) NAD_synthase PF02540.12 gi|219851785|ref|YP_002466217.1| - 1.4e-06 27.4 0.0 2.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|219851785|ref|YP_002466217.1| - 0.0011 18.4 0.0 0.037 13.5 0.0 2.2 2 0 0 2 2 2 1 PP-loop family Asn_synthase PF00733.16 gi|219851785|ref|YP_002466217.1| - 0.0057 16.1 0.0 0.0084 15.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|219851785|ref|YP_002466217.1| - 0.026 14.3 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|219851785|ref|YP_002466217.1| - 0.045 12.3 0.0 1.6 7.2 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase QueC PF06508.8 gi|219851785|ref|YP_002466217.1| - 0.069 12.4 0.0 0.19 10.9 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_3 PF01381.17 gi|219851786|ref|YP_002466218.1| - 5.4e-05 22.9 0.0 9.5e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_1 PF00126.22 gi|219851786|ref|YP_002466218.1| - 0.002 17.8 0.1 0.0065 16.1 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_37 PF13744.1 gi|219851786|ref|YP_002466218.1| - 0.002 17.8 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|219851786|ref|YP_002466218.1| - 0.0029 17.2 0.2 0.0063 16.1 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|219851786|ref|YP_002466218.1| - 0.0057 16.0 0.1 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|219851786|ref|YP_002466218.1| - 0.0078 16.3 0.1 0.013 15.6 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|219851786|ref|YP_002466218.1| - 0.0088 16.0 0.2 0.02 14.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|219851786|ref|YP_002466218.1| - 0.011 14.9 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Cro PF09048.5 gi|219851786|ref|YP_002466218.1| - 0.016 14.8 0.1 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Cro HTH_24 PF13412.1 gi|219851786|ref|YP_002466218.1| - 0.026 13.9 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_8 PF02954.14 gi|219851786|ref|YP_002466218.1| - 0.026 14.0 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.11 gi|219851786|ref|YP_002466218.1| - 0.043 13.1 0.0 0.083 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 P22_Cro PF14549.1 gi|219851786|ref|YP_002466218.1| - 0.044 13.5 0.0 0.081 12.6 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro MarR_2 PF12802.2 gi|219851786|ref|YP_002466218.1| - 0.044 13.4 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 MarR family Zea_mays_MuDR PF05928.6 gi|219851786|ref|YP_002466218.1| - 0.051 13.0 0.2 0.064 12.6 0.1 1.1 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) HTH_19 PF12844.2 gi|219851786|ref|YP_002466218.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|219851786|ref|YP_002466218.1| - 0.13 11.9 0.1 0.42 10.3 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF1019 PF06254.6 gi|219851786|ref|YP_002466218.1| - 0.15 12.2 0.2 5.4 7.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1019) Aminotran_1_2 PF00155.16 gi|219851787|ref|YP_002466219.1| - 1.5e-66 224.8 0.0 1.7e-66 224.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219851787|ref|YP_002466219.1| - 4.7e-07 29.1 0.0 6.8e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|219851787|ref|YP_002466219.1| - 7.3e-06 24.5 0.0 1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|219851787|ref|YP_002466219.1| - 0.0017 17.1 0.0 0.0054 15.5 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219851787|ref|YP_002466219.1| - 0.0029 16.8 0.0 0.006 15.7 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|219851787|ref|YP_002466219.1| - 0.0081 14.7 0.0 0.011 14.3 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain HTH_3 PF01381.17 gi|219851788|ref|YP_002466220.1| - 3.3e-09 36.4 0.0 5.8e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|219851788|ref|YP_002466220.1| - 2.7e-07 30.5 0.0 5.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219851788|ref|YP_002466220.1| - 1.6e-06 28.2 0.0 2.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_psq PF05225.11 gi|219851788|ref|YP_002466220.1| - 0.0027 17.2 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_31 PF13560.1 gi|219851788|ref|YP_002466220.1| - 0.003 17.6 0.0 0.0046 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|219851788|ref|YP_002466220.1| - 0.0034 17.6 0.0 0.0062 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|219851788|ref|YP_002466220.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|219851788|ref|YP_002466220.1| - 0.016 15.0 0.1 0.059 13.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MerR PF00376.18 gi|219851788|ref|YP_002466220.1| - 0.023 14.2 0.0 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 MerR family regulatory protein HTH_24 PF13412.1 gi|219851788|ref|YP_002466220.1| - 0.047 13.0 0.0 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|219851788|ref|YP_002466220.1| - 0.05 13.2 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|219851788|ref|YP_002466220.1| - 0.077 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|219851788|ref|YP_002466220.1| - 0.089 12.3 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|219851788|ref|YP_002466220.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|219851788|ref|YP_002466220.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NMT1_2 PF13379.1 gi|219851789|ref|YP_002466221.1| - 1.8e-19 70.1 0.0 2.3e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|219851789|ref|YP_002466221.1| - 4.1e-09 36.3 0.0 1.1e-08 34.9 0.0 1.6 1 1 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.2 gi|219851789|ref|YP_002466221.1| - 0.0027 16.7 0.0 0.027 13.4 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3834) Cys_Met_Meta_PP PF01053.15 gi|219851790|ref|YP_002466222.1| - 2e-153 510.2 0.0 2.3e-153 510.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|219851790|ref|YP_002466222.1| - 3.3e-07 29.6 0.0 7.1e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|219851790|ref|YP_002466222.1| - 1.4e-06 27.6 0.0 4.4e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|219851790|ref|YP_002466222.1| - 3.1e-06 26.1 0.0 1.4e-05 24.0 0.0 1.9 2 1 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|219851790|ref|YP_002466222.1| - 7.1e-06 25.2 0.0 1.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|219851790|ref|YP_002466222.1| - 0.036 12.7 0.0 0.055 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycine cleavage system P-protein PALP PF00291.20 gi|219851791|ref|YP_002466223.1| - 9.3e-61 205.7 0.0 1.1e-60 205.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1e PF01406.14 gi|219851792|ref|YP_002466224.1| - 1.7e-110 368.9 0.0 2.5e-110 368.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|219851792|ref|YP_002466224.1| - 4.5e-20 71.6 0.4 2.9e-09 36.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|219851792|ref|YP_002466224.1| - 1.2e-09 36.7 0.0 5.1e-07 28.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|219851792|ref|YP_002466224.1| - 2.4e-06 26.4 0.0 1.4e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) DALR_2 PF09190.6 gi|219851792|ref|YP_002466224.1| - 1.4e-05 25.1 2.9 0.00051 20.2 2.0 2.8 1 1 0 1 1 1 1 DALR domain tRNA-synt_1b PF00579.20 gi|219851792|ref|YP_002466224.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) DUF1890 PF09001.6 gi|219851793|ref|YP_002466225.1| - 4.8e-46 156.2 0.3 5.4e-46 156.0 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) tRNA-Thr_ED PF08915.6 gi|219851794|ref|YP_002466226.1| - 3.2e-47 159.9 0.0 3.9e-47 159.6 0.0 1.1 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase CBS PF00571.23 gi|219851795|ref|YP_002466227.1| - 6.1e-26 89.9 1.6 2.8e-12 46.2 0.0 2.7 3 0 0 3 3 3 2 CBS domain Abhydrolase_1 PF00561.15 gi|219851795|ref|YP_002466227.1| - 1.6e-21 76.9 0.5 5.4e-21 75.1 0.4 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|219851795|ref|YP_002466227.1| - 7.7e-11 42.3 0.0 1.2e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|219851795|ref|YP_002466227.1| - 0.026 13.9 0.1 0.042 13.2 0.1 1.2 1 0 0 1 1 1 0 Putative esterase Cys_Met_Meta_PP PF01053.15 gi|219851796|ref|YP_002466228.1| - 5e-141 469.4 0.0 5.6e-141 469.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|219851796|ref|YP_002466228.1| - 3.3e-12 46.1 0.0 4.9e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|219851796|ref|YP_002466228.1| - 1.3e-05 24.1 0.1 2.4e-05 23.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|219851796|ref|YP_002466228.1| - 0.015 13.5 0.4 0.64 8.2 0.1 2.2 2 0 0 2 2 2 0 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|219851796|ref|YP_002466228.1| - 0.015 14.4 0.0 0.073 12.1 0.0 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase ADH_zinc_N PF00107.21 gi|219851796|ref|YP_002466228.1| - 0.064 12.8 0.0 0.21 11.1 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase SLA_LP_auto_ag PF05889.8 gi|219851796|ref|YP_002466228.1| - 0.11 10.9 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) SelA PF03841.8 gi|219851796|ref|YP_002466228.1| - 0.2 10.3 0.0 0.41 9.3 0.0 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase SLA_LP_auto_ag PF05889.8 gi|219851797|ref|YP_002466229.1| - 1.3e-17 63.3 0.0 2.7e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|219851797|ref|YP_002466229.1| - 1.4e-15 56.9 0.0 2.1e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219851797|ref|YP_002466229.1| - 1.9e-06 27.2 0.1 4.4e-06 26.0 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|219851797|ref|YP_002466229.1| - 0.00011 21.3 0.1 0.00018 20.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219851797|ref|YP_002466229.1| - 0.0034 16.4 0.3 0.0053 15.8 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family MerR-DNA-bind PF09278.6 gi|219851797|ref|YP_002466229.1| - 0.079 13.3 0.2 0.18 12.2 0.1 1.5 1 0 0 1 1 1 0 MerR, DNA binding Radical_SAM PF04055.16 gi|219851798|ref|YP_002466230.1| - 1.3e-09 38.4 0.1 2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily NeuB PF03102.9 gi|219851798|ref|YP_002466230.1| - 0.038 13.1 0.0 0.074 12.1 0.0 1.4 1 0 0 1 1 1 0 NeuB family Response_reg PF00072.19 gi|219851800|ref|YP_002466232.1| - 2.1e-19 69.5 0.0 4.6e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|219851800|ref|YP_002466232.1| - 1.2e-14 55.0 0.2 3e-14 53.7 0.1 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|219851800|ref|YP_002466232.1| - 1.1e-12 47.6 0.2 3.8e-12 45.9 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|219851800|ref|YP_002466232.1| - 4.4e-10 39.8 0.0 7.2e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219851800|ref|YP_002466232.1| - 2e-09 37.6 0.0 3.6e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 GAF domain ERF PF04404.7 gi|219851800|ref|YP_002466232.1| - 0.076 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 ERF superfamily SurE PF01975.12 gi|219851802|ref|YP_002466234.1| - 0.053 12.8 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Survival protein SurE SurE PF01975.12 gi|219851803|ref|YP_002466235.1| - 0.053 12.8 0.0 0.06 12.6 0.0 1.1 1 0 0 1 1 1 0 Survival protein SurE HATPase_c PF02518.21 gi|219851805|ref|YP_002466237.1| - 4.3e-10 39.2 0.3 7e-10 38.6 0.2 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|219851805|ref|YP_002466237.1| - 0.013 15.1 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 GHKL domain LEH PF07858.7 gi|219851805|ref|YP_002466237.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain MerR-DNA-bind PF09278.6 gi|219851805|ref|YP_002466237.1| - 0.12 12.8 1.4 17 5.9 0.1 2.7 3 0 0 3 3 3 0 MerR, DNA binding HATPase_c_3 PF13589.1 gi|219851805|ref|YP_002466237.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TauE PF01925.14 gi|219851806|ref|YP_002466238.1| - 7.3e-45 153.2 44.9 8.5e-45 153.0 31.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Prok-E2_A PF14457.1 gi|219851807|ref|YP_002466239.1| - 0.11 11.9 0.1 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic E2 family A DGC PF08859.6 gi|219851808|ref|YP_002466240.1| - 3.5e-14 52.5 1.2 4.2e-14 52.3 0.5 1.5 1 1 0 1 1 1 1 DGC domain SnoaL PF07366.7 gi|219851809|ref|YP_002466241.1| - 5.6e-31 106.7 0.1 6.4e-31 106.5 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|219851809|ref|YP_002466241.1| - 1.1e-09 38.5 0.4 1.3e-09 38.3 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|219851809|ref|YP_002466241.1| - 0.0033 17.6 0.1 0.0049 17.0 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) zf-CDGSH PF09360.5 gi|219851810|ref|YP_002466242.1| - 2.7e-34 116.6 5.7 2.3e-17 62.5 1.1 2.4 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|219851810|ref|YP_002466242.1| - 1.4e-13 50.4 0.0 6.3e-13 48.3 0.0 2.1 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Isochorismatase PF00857.15 gi|219851811|ref|YP_002466243.1| - 4.2e-26 91.9 0.0 6.9e-26 91.2 0.0 1.3 1 1 0 1 1 1 1 Isochorismatase family FMN_red PF03358.10 gi|219851812|ref|YP_002466244.1| - 1.3e-36 125.3 0.0 1.8e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851812|ref|YP_002466244.1| - 2.2e-08 33.8 0.0 3.3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold EMA PF02488.10 gi|219851812|ref|YP_002466244.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Merozoite Antigen DUF2411 PF10304.4 gi|219851812|ref|YP_002466244.1| - 0.16 11.5 0.4 0.6 9.7 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2411) Abhydrolase_6 PF12697.2 gi|219851813|ref|YP_002466245.1| - 2e-10 40.9 0.0 2.2e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219851813|ref|YP_002466245.1| - 4e-08 33.1 0.0 5.2e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.8 gi|219851813|ref|YP_002466245.1| - 0.00077 19.1 0.0 0.00099 18.7 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase DUF915 PF06028.6 gi|219851813|ref|YP_002466245.1| - 0.0024 16.9 0.0 1.6 7.7 0.0 3.0 3 0 0 3 3 3 1 Alpha/beta hydrolase of unknown function (DUF915) Hydrolase_4 PF12146.3 gi|219851813|ref|YP_002466245.1| - 0.018 14.9 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase DUF676 PF05057.9 gi|219851813|ref|YP_002466245.1| - 0.054 12.7 0.0 0.091 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Lipase_2 PF01674.13 gi|219851813|ref|YP_002466245.1| - 0.078 12.2 0.0 0.83 8.9 0.0 2.1 1 1 0 1 1 1 0 Lipase (class 2) PGAP1 PF07819.8 gi|219851813|ref|YP_002466245.1| - 0.12 11.9 0.0 0.36 10.3 0.0 1.7 1 1 0 1 1 1 0 PGAP1-like protein DUF900 PF05990.7 gi|219851813|ref|YP_002466245.1| - 0.14 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Usp PF00582.21 gi|219851814|ref|YP_002466246.1| - 1.4e-35 122.4 0.1 1.6e-35 122.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|219851814|ref|YP_002466246.1| - 0.045 13.0 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DNA_photolyase PF00875.13 gi|219851814|ref|YP_002466246.1| - 0.045 13.4 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase GARS_N PF02844.10 gi|219851814|ref|YP_002466246.1| - 0.091 13.2 0.0 0.24 11.9 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain FMN_red PF03358.10 gi|219851815|ref|YP_002466247.1| - 2.4e-30 105.0 0.0 3.2e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219851815|ref|YP_002466247.1| - 3.1e-20 72.5 0.0 4.5e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold CW_binding_2 PF04122.7 gi|219851815|ref|YP_002466247.1| - 0.079 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative cell wall binding repeat 2 DUF2430 PF10353.4 gi|219851815|ref|YP_002466247.1| - 1.9 8.6 4.9 2.8 8.1 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2430) DNA_pol_B PF00136.16 gi|219851816|ref|YP_002466248.1| - 5.9e-19 68.1 0.0 4.2e-10 39.0 0.0 2.4 1 1 1 2 2 2 2 DNA polymerase family B XdhC_C PF13478.1 gi|219851818|ref|YP_002466250.1| - 0.13 12.5 0.3 0.2 11.9 0.2 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain RNase_Zc3h12a PF11977.3 gi|219851818|ref|YP_002466250.1| - 0.13 12.0 0.1 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Flavin_Reduct PF01613.13 gi|219851820|ref|YP_002466252.1| - 1.1e-21 77.3 0.0 1.3e-21 77.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain AIRS PF00586.19 gi|219851821|ref|YP_002466253.1| - 4.7e-20 71.6 0.2 9.6e-20 70.6 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF460 PF04312.8 gi|219851822|ref|YP_002466254.1| - 1.6e-45 154.0 0.0 3.2e-45 153.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) PucR PF07905.6 gi|219851822|ref|YP_002466254.1| - 8.6e-05 22.1 0.0 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 Purine catabolism regulatory protein-like family IncA PF04156.9 gi|219851822|ref|YP_002466254.1| - 0.0054 16.3 0.6 0.013 15.1 0.4 1.6 1 0 0 1 1 1 1 IncA protein DUF641 PF04859.7 gi|219851822|ref|YP_002466254.1| - 0.0068 16.1 5.4 1.1 9.0 1.7 2.4 1 1 1 2 2 2 2 Plant protein of unknown function (DUF641) V_ATPase_I PF01496.14 gi|219851822|ref|YP_002466254.1| - 0.021 12.6 0.3 0.028 12.2 0.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.7 gi|219851822|ref|YP_002466254.1| - 0.28 11.5 0.1 0.28 11.5 0.1 3.3 2 1 1 3 3 3 0 SlyX Fib_alpha PF08702.5 gi|219851822|ref|YP_002466254.1| - 1.1 9.3 3.6 4 7.5 1.9 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|219851822|ref|YP_002466254.1| - 1.3 8.0 4.8 2.2 7.2 3.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Mnd1 PF03962.10 gi|219851822|ref|YP_002466254.1| - 9.8 5.7 9.3 11 5.6 4.6 1.9 1 1 0 1 1 1 0 Mnd1 family RIO1 PF01163.17 gi|219851823|ref|YP_002466255.1| - 3.7e-45 153.6 0.0 5.3e-45 153.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|219851823|ref|YP_002466255.1| - 5.8e-22 77.5 0.2 9.8e-22 76.8 0.1 1.3 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|219851823|ref|YP_002466255.1| - 2.7e-05 24.0 0.3 0.05 13.3 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|219851823|ref|YP_002466255.1| - 0.0012 18.0 0.0 0.0021 17.2 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|219851823|ref|YP_002466255.1| - 0.003 16.8 0.0 0.0048 16.1 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) PCI PF01399.22 gi|219851823|ref|YP_002466255.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 PCI domain TrkA_N PF02254.13 gi|219851825|ref|YP_002466257.1| - 6.1e-36 122.9 4.6 1.9e-22 79.4 0.2 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|219851825|ref|YP_002466257.1| - 9.6e-17 60.3 4.5 3.5e-08 32.9 0.1 4.1 4 1 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|219851825|ref|YP_002466257.1| - 3.1e-10 39.6 10.8 6.9e-10 38.5 7.5 1.5 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.16 gi|219851825|ref|YP_002466257.1| - 9.7e-05 22.2 0.3 0.98 9.2 0.0 3.3 3 0 0 3 3 3 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|219851825|ref|YP_002466257.1| - 0.00019 21.6 0.6 0.021 15.1 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|219851825|ref|YP_002466257.1| - 0.0076 16.5 0.8 0.44 10.8 0.0 2.9 3 0 0 3 3 3 1 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|219851825|ref|YP_002466257.1| - 0.083 12.8 0.1 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 NADH(P)-binding CPSase_L_chain PF00289.17 gi|219851825|ref|YP_002466257.1| - 0.11 12.6 1.7 5.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_3 PF01494.14 gi|219851825|ref|YP_002466257.1| - 0.11 11.5 0.0 0.21 10.6 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Cg6151-P PF10233.4 gi|219851825|ref|YP_002466257.1| - 3 7.8 8.1 1 9.3 0.5 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein CG6151-P Ion_trans PF00520.26 gi|219851825|ref|YP_002466257.1| - 3.1 7.0 9.5 6.6 5.9 6.6 1.6 1 1 0 1 1 1 0 Ion transport protein NAD_synthase PF02540.12 gi|219851826|ref|YP_002466258.1| - 3.4e-71 238.9 0.0 4e-71 238.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|219851826|ref|YP_002466258.1| - 0.00053 18.6 0.0 0.0012 17.4 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|219851826|ref|YP_002466258.1| - 0.0022 17.5 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|219851826|ref|YP_002466258.1| - 0.096 12.5 0.0 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|219851826|ref|YP_002466258.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC GPI PF06560.6 gi|219851827|ref|YP_002466259.1| - 3.5e-43 146.7 1.1 4.7e-43 146.3 0.8 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|219851827|ref|YP_002466259.1| - 0.0023 17.4 0.1 0.0051 16.2 0.0 1.6 1 0 0 1 1 1 1 Cupin domain RNB PF00773.14 gi|219851828|ref|YP_002466260.1| - 9.6e-64 215.7 0.0 1.2e-63 215.3 0.0 1.1 1 0 0 1 1 1 1 RNB domain Nitroreductase PF00881.19 gi|219851829|ref|YP_002466261.1| - 6.4e-39 133.4 0.0 7.3e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|219851829|ref|YP_002466261.1| - 0.0039 16.4 0.5 0.78 8.8 0.0 3.1 3 1 1 4 4 4 3 Putative TM nitroreductase CARDB PF07705.6 gi|219851830|ref|YP_002466262.1| - 2.7e-09 36.9 7.6 0.0016 18.4 0.5 3.4 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|219851830|ref|YP_002466262.1| - 3.3e-08 33.4 7.2 0.013 15.5 0.0 4.5 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_M73 PF12389.3 gi|219851830|ref|YP_002466262.1| - 0.12 11.8 0.1 0.68 9.3 0.0 2.3 2 1 1 3 3 3 0 Camelysin metallo-endopeptidase TrmB PF01978.14 gi|219851831|ref|YP_002466263.1| - 5.1e-20 70.9 0.0 1.1e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219851831|ref|YP_002466263.1| - 0.0037 16.8 0.0 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain Regulator_TrmB PF11495.3 gi|219851831|ref|YP_002466263.1| - 0.0037 16.2 0.0 0.0054 15.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|219851831|ref|YP_002466263.1| - 0.047 13.4 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|219851831|ref|YP_002466263.1| - 0.051 13.6 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor DUF128 PF01995.11 gi|219851832|ref|YP_002466264.1| - 1.7e-83 279.2 0.0 1.9e-83 279.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 Pyr_redox_2 PF07992.9 gi|219851834|ref|YP_002466266.1| - 8.4e-29 100.8 4.6 2.9e-28 99.1 3.2 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|219851834|ref|YP_002466266.1| - 1.3e-12 48.2 0.2 4.3e-10 39.9 0.1 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|219851834|ref|YP_002466266.1| - 6.7e-12 45.6 7.2 3e-09 37.1 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|219851834|ref|YP_002466266.1| - 3.7e-07 29.3 17.9 0.0016 17.4 0.4 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.17 gi|219851834|ref|YP_002466266.1| - 2.1e-06 26.8 13.2 4.6e-05 22.4 4.6 3.4 2 2 2 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|219851834|ref|YP_002466266.1| - 4.3e-06 25.4 5.1 0.00019 20.0 0.4 3.3 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.2 gi|219851834|ref|YP_002466266.1| - 7.5e-06 25.2 5.6 0.00011 21.3 2.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|219851834|ref|YP_002466266.1| - 9.8e-06 24.6 5.9 0.0035 16.2 0.5 2.6 2 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|219851834|ref|YP_002466266.1| - 0.00045 20.1 7.7 0.00093 19.1 0.6 3.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|219851834|ref|YP_002466266.1| - 0.00053 19.1 0.7 0.00053 19.1 0.5 1.5 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|219851834|ref|YP_002466266.1| - 0.0018 17.0 0.2 0.0018 17.0 0.1 2.3 3 0 0 3 3 3 1 Tryptophan halogenase 3HCDH_N PF02737.13 gi|219851834|ref|YP_002466266.1| - 0.002 17.8 3.0 0.2 11.3 0.2 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|219851834|ref|YP_002466266.1| - 0.0033 17.1 0.7 0.12 12.0 0.1 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|219851834|ref|YP_002466266.1| - 0.0033 17.1 7.3 0.91 9.2 0.1 3.4 3 0 0 3 3 3 1 FAD-NAD(P)-binding ApbA PF02558.11 gi|219851834|ref|YP_002466266.1| - 0.0068 15.8 2.8 0.039 13.4 0.3 2.5 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|219851834|ref|YP_002466266.1| - 0.013 15.4 1.6 1.8 8.5 0.1 2.4 2 0 0 2 2 2 0 NADH(P)-binding Pyr_redox_dim PF02852.17 gi|219851834|ref|YP_002466266.1| - 0.019 14.9 0.0 0.074 13.0 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K_oxygenase PF13434.1 gi|219851834|ref|YP_002466266.1| - 0.024 13.5 0.2 0.063 12.1 0.0 1.8 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|219851834|ref|YP_002466266.1| - 0.026 13.4 3.3 0.041 12.7 0.2 2.5 2 2 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.12 gi|219851834|ref|YP_002466266.1| - 0.053 12.6 4.1 0.085 11.9 0.2 2.8 2 1 0 3 3 3 0 Thi4 family NAD_binding_7 PF13241.1 gi|219851834|ref|YP_002466266.1| - 0.085 13.1 0.6 2 8.7 0.0 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|219851834|ref|YP_002466266.1| - 0.14 12.2 0.6 0.69 10.0 0.1 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiI PF02568.9 gi|219851835|ref|YP_002466267.1| - 2.8e-64 216.2 0.2 3.7e-64 215.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|219851835|ref|YP_002466267.1| - 4.3e-12 46.1 1.2 5.9e-12 45.6 0.1 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|219851835|ref|YP_002466267.1| - 7.2e-08 31.9 0.1 2.5e-07 30.1 0.0 1.9 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|219851835|ref|YP_002466267.1| - 0.00022 20.7 0.0 0.0049 16.3 0.0 2.1 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|219851835|ref|YP_002466267.1| - 0.0088 14.6 0.0 0.013 14.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|219851835|ref|YP_002466267.1| - 0.081 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.12 gi|219851835|ref|YP_002466267.1| - 0.084 11.7 0.0 0.22 10.4 0.0 1.6 1 1 0 1 1 1 0 NAD synthase CBS PF00571.23 gi|219851836|ref|YP_002466268.1| - 2.1e-25 88.1 1.4 1.2e-11 44.1 0.0 2.6 3 0 0 3 3 3 2 CBS domain Abhydrolase_1 PF00561.15 gi|219851836|ref|YP_002466268.1| - 5.2e-23 81.8 0.2 7.4e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|219851836|ref|YP_002466268.1| - 3.2e-11 43.5 0.1 5.3e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219851836|ref|YP_002466268.1| - 0.00095 18.9 0.0 0.0066 16.2 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Cys_Met_Meta_PP PF01053.15 gi|219851837|ref|YP_002466269.1| - 4.7e-139 462.9 0.0 5.3e-139 462.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|219851837|ref|YP_002466269.1| - 3.6e-12 46.0 0.1 5.8e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|219851837|ref|YP_002466269.1| - 6.9e-08 31.6 0.2 1.6e-07 30.4 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219851837|ref|YP_002466269.1| - 0.02 14.0 0.1 0.059 12.5 0.0 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase Met_gamma_lyase PF06838.6 gi|219851837|ref|YP_002466269.1| - 0.03 12.6 0.8 0.079 11.2 0.6 1.6 1 1 0 1 1 1 0 Methionine gamma-lyase SLA_LP_auto_ag PF05889.8 gi|219851838|ref|YP_002466270.1| - 4.8e-18 64.7 0.0 8.2e-18 64.0 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|219851838|ref|YP_002466270.1| - 2.6e-16 59.3 0.0 3.5e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|219851838|ref|YP_002466270.1| - 8.5e-05 21.6 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|219851838|ref|YP_002466270.1| - 0.00015 21.0 0.2 0.00045 19.4 0.1 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase TfuA PF07812.7 gi|219851839|ref|YP_002466271.1| - 5.5e-43 145.2 0.0 7.3e-43 144.8 0.0 1.2 1 0 0 1 1 1 1 TfuA-like protein YcaO PF02624.11 gi|219851840|ref|YP_002466272.1| - 3.7e-91 306.0 1.8 1e-90 304.5 0.7 1.8 2 0 0 2 2 2 1 YcaO-like family NadA PF02445.11 gi|219851841|ref|YP_002466273.1| - 2e-101 338.7 6.0 2.2e-101 338.5 4.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF1246 PF06849.7 gi|219851841|ref|YP_002466273.1| - 0.056 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1246) DUF4280 PF14107.1 gi|219851841|ref|YP_002466273.1| - 0.11 12.8 0.1 0.45 10.8 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4280) Glyco_hydro_44 PF12891.2 gi|219851841|ref|YP_002466273.1| - 0.14 11.6 0.6 23 4.4 0.0 2.8 3 0 0 3 3 3 0 Glycoside hydrolase family 44 HTH_3 PF01381.17 gi|219851842|ref|YP_002466274.1| - 0.00066 19.4 0.2 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|219851842|ref|YP_002466274.1| - 0.0078 15.8 0.1 0.019 14.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.15 gi|219851842|ref|YP_002466274.1| - 0.0086 15.7 0.1 0.45 10.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_1 PF00126.22 gi|219851842|ref|YP_002466274.1| - 0.022 14.4 0.5 0.049 13.3 0.3 1.6 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF1019 PF06254.6 gi|219851842|ref|YP_002466274.1| - 0.046 13.8 0.3 0.092 12.9 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1019) HTH_37 PF13744.1 gi|219851842|ref|YP_002466274.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|219851842|ref|YP_002466274.1| - 0.072 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|219851842|ref|YP_002466274.1| - 0.083 12.9 0.1 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_U35 PF04586.12 gi|219851842|ref|YP_002466274.1| - 0.14 12.1 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Caudovirus prohead protease Asn_synthase PF00733.16 gi|219851843|ref|YP_002466275.1| - 8.8e-06 25.3 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|219851843|ref|YP_002466275.1| - 1.9e-05 23.6 0.0 3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|219851843|ref|YP_002466275.1| - 0.032 13.7 0.0 0.071 12.6 0.0 1.6 1 0 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.11 gi|219851843|ref|YP_002466275.1| - 0.1 11.1 0.0 0.56 8.7 0.0 1.9 2 0 0 2 2 2 0 tRNA methyl transferase Aminotran_5 PF00266.14 gi|219851844|ref|YP_002466276.1| - 9.9e-118 393.0 0.0 1.1e-117 392.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|219851844|ref|YP_002466276.1| - 1.6e-11 43.9 1.6 3.1e-11 42.9 1.1 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|219851844|ref|YP_002466276.1| - 1.3e-09 37.6 0.0 1.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|219851844|ref|YP_002466276.1| - 4.5e-08 31.7 0.0 8.1e-08 30.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|219851844|ref|YP_002466276.1| - 3.8e-05 22.8 0.0 0.00015 20.8 0.0 1.7 1 1 0 2 2 2 1 Aminotransferase class I and II FdhD-NarQ PF02634.10 gi|219851845|ref|YP_002466277.1| - 9.5e-70 234.7 0.1 1.1e-69 234.5 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family ATP_bind_3 PF01171.15 gi|219851846|ref|YP_002466278.1| - 5.4e-16 58.6 0.0 7.9e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|219851846|ref|YP_002466278.1| - 8.3e-05 21.2 0.0 0.00012 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.8 gi|219851846|ref|YP_002466278.1| - 0.00023 20.5 0.0 0.00048 19.4 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|219851846|ref|YP_002466278.1| - 0.0007 19.1 0.0 0.00093 18.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|219851846|ref|YP_002466278.1| - 0.0012 18.6 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|219851846|ref|YP_002466278.1| - 0.0047 15.8 0.0 0.0066 15.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiS PF02597.15 gi|219851847|ref|YP_002466279.1| - 2.2e-08 34.4 0.1 2.4e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|219851847|ref|YP_002466279.1| - 0.041 13.7 0.1 0.062 13.1 0.1 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I TrkA_C PF02080.16 gi|219851847|ref|YP_002466279.1| - 0.055 13.0 0.3 0.08 12.5 0.2 1.2 1 0 0 1 1 1 0 TrkA-C domain PALP PF00291.20 gi|219851848|ref|YP_002466280.1| - 1.5e-63 214.8 0.3 1.7e-63 214.7 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|219851848|ref|YP_002466280.1| - 0.0016 17.9 0.2 0.0086 15.6 0.1 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_3 PF07859.8 gi|219851848|ref|YP_002466280.1| - 0.031 13.8 0.0 3 7.3 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold TFIIB PF00382.14 gi|219851848|ref|YP_002466280.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Transcription factor TFIIB repeat Pribosyltran PF00156.22 gi|219851848|ref|YP_002466280.1| - 0.15 11.8 0.6 0.75 9.5 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosyl transferase domain DUF59 PF01883.14 gi|219851849|ref|YP_002466281.1| - 1.4e-17 63.4 0.6 2.3e-17 62.7 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF59 Hexapep PF00132.19 gi|219851849|ref|YP_002466281.1| - 4.8e-12 44.8 13.2 1.6e-07 30.4 2.4 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219851849|ref|YP_002466281.1| - 5.6e-08 32.2 12.0 3.3e-05 23.3 1.6 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|219851849|ref|YP_002466281.1| - 0.0079 16.4 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Aldolase_2 PF10120.4 gi|219851850|ref|YP_002466282.1| - 9.7e-46 155.2 0.1 1.2e-45 154.9 0.1 1.0 1 0 0 1 1 1 1 Putative aldolase AIRS_C PF02769.17 gi|219851851|ref|YP_002466283.1| - 2.5e-23 82.8 0.1 3.5e-23 82.3 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|219851851|ref|YP_002466283.1| - 4.1e-11 42.9 0.1 1.2e-10 41.5 0.0 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M24 PF00557.19 gi|219851852|ref|YP_002466284.1| - 2.7e-34 118.5 0.0 3.7e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|219851852|ref|YP_002466284.1| - 8e-10 39.3 0.1 1.2e-09 38.7 0.1 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF3502 PF12010.3 gi|219851852|ref|YP_002466284.1| - 0.2 11.6 0.0 0.43 10.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3502) Glu_synthase PF01645.12 gi|219851854|ref|YP_002466286.1| - 1e-90 304.3 0.1 1.3e-90 304.0 0.1 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Rubredoxin PF00301.15 gi|219851854|ref|YP_002466286.1| - 2.7e-12 46.3 1.8 3e-10 39.8 0.6 2.5 2 0 0 2 2 2 1 Rubredoxin FMN_dh PF01070.13 gi|219851854|ref|YP_002466286.1| - 4.6e-11 42.1 2.3 3.5e-08 32.6 0.6 3.0 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|219851854|ref|YP_002466286.1| - 5.1e-06 25.6 3.0 9e-06 24.7 2.0 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|219851854|ref|YP_002466286.1| - 1e-05 24.8 2.4 0.00061 19.0 1.5 2.2 1 1 1 2 2 2 1 Nitronate monooxygenase zf-Sec23_Sec24 PF04810.10 gi|219851854|ref|YP_002466286.1| - 0.0092 15.5 4.4 0.23 11.0 0.0 3.2 3 0 0 3 3 3 1 Sec23/Sec24 zinc finger His_biosynth PF00977.16 gi|219851854|ref|YP_002466286.1| - 0.014 14.6 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Elf1 PF05129.8 gi|219851854|ref|YP_002466286.1| - 0.15 11.7 0.6 0.59 9.8 0.0 2.2 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|219851854|ref|YP_002466286.1| - 0.23 10.7 7.8 4.4 6.6 0.1 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding zf-C2H2_4 PF13894.1 gi|219851854|ref|YP_002466286.1| - 2.8 8.4 5.1 1e+02 3.6 0.1 3.7 3 0 0 3 3 3 0 C2H2-type zinc finger PsiE PF06146.7 gi|219851855|ref|YP_002466287.1| - 0.00026 21.1 2.4 0.00026 21.1 1.6 2.0 2 1 0 2 2 2 1 Phosphate-starvation-inducible E Virul_fac_BrkB PF03631.10 gi|219851855|ref|YP_002466287.1| - 0.015 14.6 7.8 0.017 14.4 5.4 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF2569 PF10754.4 gi|219851855|ref|YP_002466287.1| - 0.22 11.7 7.8 0.31 11.2 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) DUF2530 PF10745.4 gi|219851855|ref|YP_002466287.1| - 3.3 7.7 5.0 1.7 8.6 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2530) DUF202 PF02656.10 gi|219851855|ref|YP_002466287.1| - 4.2 7.6 9.6 5.2 7.3 2.5 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Spore_YabQ PF09578.5 gi|219851855|ref|YP_002466287.1| - 6.1 6.8 8.0 1.8 8.5 0.1 2.5 2 1 1 3 3 3 0 Spore cortex protein YabQ (Spore_YabQ) PMT_2 PF13231.1 gi|219851855|ref|YP_002466287.1| - 8.3 6.2 11.5 9.1 6.1 5.0 2.2 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase FtsX PF02687.16 gi|219851855|ref|YP_002466287.1| - 8.8 6.1 11.4 13 5.5 0.4 2.3 2 1 0 2 2 2 0 FtsX-like permease family Pyridox_ox_2 PF12900.2 gi|219851856|ref|YP_002466288.1| - 2.4e-21 76.0 0.0 2.7e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|219851856|ref|YP_002466288.1| - 7.4e-14 51.5 0.0 9.9e-14 51.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase eIF-1a PF01176.14 gi|219851857|ref|YP_002466289.1| - 7.4e-19 66.9 0.1 8.7e-19 66.7 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 MFS_1 PF07690.11 gi|219851859|ref|YP_002466291.1| - 3.3e-60 203.6 42.5 3.3e-60 203.6 29.5 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219851859|ref|YP_002466291.1| - 8.7e-12 44.3 9.4 8.7e-12 44.3 6.5 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|219851859|ref|YP_002466291.1| - 2.4e-11 42.4 18.9 2e-10 39.4 4.8 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|219851859|ref|YP_002466291.1| - 8.1e-06 24.4 38.5 0.0029 16.0 4.7 3.2 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|219851859|ref|YP_002466291.1| - 0.00019 21.1 3.5 0.0022 17.7 0.0 3.3 3 0 0 3 3 3 1 MFS_1 like family GyrI-like PF06445.10 gi|219851860|ref|YP_002466292.1| - 2e-26 92.8 0.1 2.3e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|219851860|ref|YP_002466292.1| - 5.3e-06 26.5 0.0 5.7e-06 26.4 0.0 1.2 1 1 0 1 1 1 1 Integron-associated effector binding protein DUF204 PF02659.10 gi|219851861|ref|YP_002466293.1| - 5.4e-28 96.9 29.0 1.4e-15 57.1 7.1 2.7 3 0 0 3 3 3 2 Domain of unknown function DUF YcfA PF07927.7 gi|219851862|ref|YP_002466294.1| - 1.9e-06 27.6 0.0 2.4e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|219851863|ref|YP_002466295.1| - 3.2e-15 55.4 0.0 4.6e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|219851863|ref|YP_002466295.1| - 0.047 13.7 0.0 0.05 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) PadR PF03551.9 gi|219851864|ref|YP_002466296.1| - 1.6e-16 59.8 0.6 3e-16 58.9 0.2 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|219851864|ref|YP_002466296.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Penicillinase_R PF03965.11 gi|219851864|ref|YP_002466296.1| - 0.088 12.9 0.0 12 5.9 0.0 2.2 1 1 1 2 2 2 0 Penicillinase repressor ABC2_membrane PF01061.19 gi|219851865|ref|YP_002466297.1| - 9.5e-06 24.9 9.0 1.2e-05 24.6 6.2 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219851865|ref|YP_002466297.1| - 2.5 7.0 10.6 5.3 5.9 7.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Colicin_V PF02674.11 gi|219851866|ref|YP_002466298.1| - 0.041 13.7 5.6 0.048 13.5 3.9 1.1 1 0 0 1 1 1 0 Colicin V production protein DUF1148 PF06618.6 gi|219851866|ref|YP_002466298.1| - 0.1 12.5 0.9 0.12 12.3 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1148) DUF2207 PF09972.4 gi|219851866|ref|YP_002466298.1| - 0.61 8.6 3.4 0.69 8.4 2.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PEN-2 PF10251.4 gi|219851866|ref|YP_002466298.1| - 6.3 7.0 7.5 10 6.4 5.2 1.4 1 1 0 1 1 1 0 Presenilin enhancer-2 subunit of gamma secretase DZR PF12773.2 gi|219851868|ref|YP_002466300.1| - 1.1e-07 31.5 8.5 0.00031 20.5 0.9 2.2 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219851868|ref|YP_002466300.1| - 3.7e-06 25.9 10.3 3.1e-05 23.0 1.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219851868|ref|YP_002466300.1| - 3.2e-05 23.2 10.2 0.0029 17.0 1.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|219851868|ref|YP_002466300.1| - 0.0073 15.7 0.7 0.0073 15.7 0.5 4.0 4 0 0 4 4 4 1 NADH pyrophosphatase zinc ribbon domain DUF2116 PF09889.4 gi|219851868|ref|YP_002466300.1| - 0.032 14.0 3.0 1.2 9.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.4 gi|219851868|ref|YP_002466300.1| - 0.17 11.6 12.4 0.079 12.6 0.9 3.1 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2_jaz PF12171.3 gi|219851868|ref|YP_002466300.1| - 0.27 11.4 1.5 0.65 10.2 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding DUF3357 PF11837.3 gi|219851869|ref|YP_002466301.1| - 0.057 13.2 0.5 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) SNN_transmemb PF09049.5 gi|219851869|ref|YP_002466301.1| - 2.3 7.9 5.0 0.67 9.6 0.9 2.0 2 0 0 2 2 2 0 Stannin transmembrane Gram_pos_anchor PF00746.16 gi|219851869|ref|YP_002466301.1| - 3.1 7.7 7.4 0.52 10.1 0.6 2.3 2 0 0 2 2 2 0 Gram positive anchor DUF2284 PF10050.4 gi|219851870|ref|YP_002466302.1| - 7.9e-46 155.6 0.0 9.3e-46 155.4 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) MarR_2 PF12802.2 gi|219851871|ref|YP_002466303.1| - 1.4e-12 47.1 0.1 2.3e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|219851871|ref|YP_002466303.1| - 3.2e-11 42.7 0.0 6e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219851871|ref|YP_002466303.1| - 4.3e-06 26.9 0.0 6.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|219851871|ref|YP_002466303.1| - 0.002 17.6 0.1 0.0038 16.8 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|219851871|ref|YP_002466303.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|219851871|ref|YP_002466303.1| - 0.015 15.4 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|219851871|ref|YP_002466303.1| - 0.016 14.8 0.1 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MFS_1 PF07690.11 gi|219851872|ref|YP_002466304.1| - 7.3e-50 169.6 54.6 7.3e-50 169.6 37.8 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219851872|ref|YP_002466304.1| - 3.1e-07 29.3 34.1 2.6e-05 22.9 8.3 3.1 3 1 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|219851872|ref|YP_002466304.1| - 5.8e-06 24.9 41.0 0.00061 18.3 6.9 3.1 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|219851872|ref|YP_002466304.1| - 0.076 11.1 28.8 0.0024 16.0 11.7 2.4 2 1 1 3 3 3 0 Transmembrane secretion effector vATP-synt_AC39 PF01992.11 gi|219851873|ref|YP_002466305.1| - 2.6e-60 204.3 0.1 3.6e-60 203.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Pas_Saposin PF09016.5 gi|219851873|ref|YP_002466305.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Pas factor saposin fold ATP-synt_D PF01813.12 gi|219851874|ref|YP_002466306.1| - 4.5e-48 163.3 1.3 5.2e-48 163.2 0.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Phos_pyr_kin PF08543.7 gi|219851875|ref|YP_002466307.1| - 4e-75 252.2 0.0 4.5e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|219851875|ref|YP_002466307.1| - 1.1e-06 28.0 0.0 1.4e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|219851875|ref|YP_002466307.1| - 0.0012 18.1 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase Abhydrolase_6 PF12697.2 gi|219851875|ref|YP_002466307.1| - 0.1 12.4 0.3 0.35 10.7 0.1 1.9 1 1 0 2 2 2 0 Alpha/beta hydrolase family PrsW-protease PF13367.1 gi|219851876|ref|YP_002466308.1| - 5.8e-37 126.7 15.1 7.7e-37 126.3 10.5 1.1 1 0 0 1 1 1 1 Protease prsW family MacB_PCD PF12704.2 gi|219851877|ref|YP_002466309.1| - 1.5e-35 122.9 1.6 1.5e-35 122.9 1.1 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|219851877|ref|YP_002466309.1| - 5.2e-24 84.3 12.3 5.2e-24 84.3 8.5 2.3 2 0 0 2 2 2 1 FtsX-like permease family DUF4358 PF14270.1 gi|219851877|ref|YP_002466309.1| - 0.082 12.7 1.3 0.14 12.0 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4358) DUF543 PF04418.7 gi|219851877|ref|YP_002466309.1| - 1.6 8.7 5.9 4.6 7.2 4.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF543) ABC_tran PF00005.22 gi|219851878|ref|YP_002466310.1| - 1.4e-33 116.1 0.0 1.9e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851878|ref|YP_002466310.1| - 9.5e-11 42.1 0.0 9.1e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219851878|ref|YP_002466310.1| - 3.3e-05 23.2 0.1 0.068 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219851878|ref|YP_002466310.1| - 0.00057 19.0 0.0 0.34 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|219851878|ref|YP_002466310.1| - 0.0017 17.8 0.1 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|219851878|ref|YP_002466310.1| - 0.0021 17.5 0.0 0.0048 16.3 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|219851878|ref|YP_002466310.1| - 0.0026 18.5 0.0 0.004 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|219851878|ref|YP_002466310.1| - 0.0046 16.6 0.0 2 8.1 0.0 2.3 2 0 0 2 2 2 2 NTPase AAA_25 PF13481.1 gi|219851878|ref|YP_002466310.1| - 0.005 16.2 0.0 0.0099 15.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|219851878|ref|YP_002466310.1| - 0.0051 16.9 0.2 0.025 14.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|219851878|ref|YP_002466310.1| - 0.0052 15.9 0.0 0.0089 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|219851878|ref|YP_002466310.1| - 0.0067 16.3 0.1 0.54 10.1 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|219851878|ref|YP_002466310.1| - 0.0075 16.5 0.0 0.056 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|219851878|ref|YP_002466310.1| - 0.0087 16.0 0.1 0.022 14.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|219851878|ref|YP_002466310.1| - 0.016 15.5 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|219851878|ref|YP_002466310.1| - 0.018 14.6 0.3 0.2 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|219851878|ref|YP_002466310.1| - 0.021 14.8 0.1 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|219851878|ref|YP_002466310.1| - 0.024 14.3 0.1 0.21 11.2 0.0 2.2 3 0 0 3 3 2 0 Archaeal ATPase cobW PF02492.14 gi|219851878|ref|YP_002466310.1| - 0.027 13.9 0.1 0.055 12.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|219851878|ref|YP_002466310.1| - 0.043 12.7 0.1 0.099 11.5 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|219851878|ref|YP_002466310.1| - 0.045 13.3 0.1 0.079 12.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|219851878|ref|YP_002466310.1| - 0.046 13.5 0.0 0.092 12.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|219851878|ref|YP_002466310.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|219851878|ref|YP_002466310.1| - 0.099 12.5 0.0 0.68 9.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.4 gi|219851878|ref|YP_002466310.1| - 0.17 10.3 0.0 0.28 9.6 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein Transglut_C PF00927.17 gi|219851879|ref|YP_002466311.1| - 0.001 19.1 0.4 2.9 7.9 0.3 3.4 2 1 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain DUF568 PF04526.8 gi|219851879|ref|YP_002466311.1| - 0.016 15.4 0.1 0.063 13.5 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF568) CARDB PF07705.6 gi|219851879|ref|YP_002466311.1| - 0.022 14.7 5.7 9.1 6.4 0.0 3.6 3 1 0 3 3 3 0 CARDB Yip1 PF04893.12 gi|219851880|ref|YP_002466312.1| - 1.1e-22 80.3 15.2 1.3e-22 80.0 10.6 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|219851880|ref|YP_002466312.1| - 4.6e-08 32.9 8.8 6e-08 32.5 6.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) TrbC PF04956.8 gi|219851880|ref|YP_002466312.1| - 0.0057 16.6 4.4 0.0057 16.6 3.1 2.8 2 1 0 3 3 3 1 TrbC/VIRB2 family DUF4064 PF13273.1 gi|219851880|ref|YP_002466312.1| - 0.024 14.7 1.0 0.024 14.7 0.7 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF1129 PF06570.6 gi|219851880|ref|YP_002466312.1| - 1.1 8.5 3.9 0.68 9.2 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Yip1 PF04893.12 gi|219851881|ref|YP_002466313.1| - 2.2e-31 108.6 23.2 2.8e-31 108.3 16.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|219851881|ref|YP_002466313.1| - 4e-11 42.8 19.2 5.8e-11 42.3 13.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Col_cuticle_N PF01484.12 gi|219851881|ref|YP_002466313.1| - 0.67 9.6 0.1 0.67 9.6 0.1 4.1 5 0 0 5 5 5 0 Nematode cuticle collagen N-terminal domain DUF342 PF03961.8 gi|219851882|ref|YP_002466314.1| - 0.006 15.0 5.7 0.0084 14.5 4.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) ABC_tran PF00005.22 gi|219851883|ref|YP_002466315.1| - 1.4e-32 112.8 0.0 2.6e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851883|ref|YP_002466315.1| - 2.9e-15 56.9 0.9 3.6e-09 36.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|219851883|ref|YP_002466315.1| - 1.9e-05 24.0 0.0 3.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|219851883|ref|YP_002466315.1| - 6.1e-05 22.2 0.0 0.016 14.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|219851883|ref|YP_002466315.1| - 0.0011 19.3 0.6 0.0023 18.2 0.4 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|219851883|ref|YP_002466315.1| - 0.0045 16.1 0.0 0.0076 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|219851883|ref|YP_002466315.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|219851883|ref|YP_002466315.1| - 0.0096 15.8 0.0 0.095 12.6 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|219851883|ref|YP_002466315.1| - 0.012 15.8 0.3 0.65 10.2 0.2 3.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DUF4162 PF13732.1 gi|219851883|ref|YP_002466315.1| - 0.016 15.6 0.0 0.035 14.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) MutS_V PF00488.16 gi|219851883|ref|YP_002466315.1| - 0.022 14.1 0.0 0.48 9.7 0.0 2.1 2 0 0 2 2 2 0 MutS domain V SMC_N PF02463.14 gi|219851883|ref|YP_002466315.1| - 0.026 13.7 0.1 1.9 7.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|219851883|ref|YP_002466315.1| - 0.034 13.5 0.1 0.62 9.4 0.0 2.4 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.10 gi|219851883|ref|YP_002466315.1| - 0.042 12.5 0.0 0.061 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|219851883|ref|YP_002466315.1| - 0.045 13.4 0.3 4.6 6.9 0.0 2.3 2 0 0 2 2 2 0 NTPase Mg_chelatase PF01078.16 gi|219851883|ref|YP_002466315.1| - 0.048 12.8 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|219851883|ref|YP_002466315.1| - 0.062 13.2 0.1 0.14 12.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|219851883|ref|YP_002466315.1| - 0.067 13.0 0.1 0.31 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|219851883|ref|YP_002466315.1| - 0.068 12.5 0.0 5.3 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|219851883|ref|YP_002466315.1| - 0.096 12.8 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|219851883|ref|YP_002466315.1| - 0.13 11.0 0.1 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_13 PF13166.1 gi|219851883|ref|YP_002466315.1| - 0.2 10.1 0.0 0.3 9.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|219851884|ref|YP_002466316.1| - 3.1e-35 121.8 29.4 3.6e-35 121.6 20.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|219851884|ref|YP_002466316.1| - 4.3e-29 101.1 29.9 2.2e-25 89.0 12.9 2.6 3 0 0 3 3 3 2 ABC-2 type transporter UPF0118 PF01594.11 gi|219851885|ref|YP_002466317.1| - 3e-35 121.7 53.9 3.8e-35 121.4 37.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 EVE PF01878.13 gi|219851886|ref|YP_002466318.1| - 5.9e-17 62.0 0.0 7e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 EVE domain Glyoxalase_2 PF12681.2 gi|219851887|ref|YP_002466319.1| - 8.6e-15 55.2 0.0 9.9e-15 55.0 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|219851887|ref|YP_002466319.1| - 5.3e-10 39.3 0.0 1.1e-09 38.3 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HxlR PF01638.12 gi|219851888|ref|YP_002466320.1| - 3.9e-33 112.9 0.2 5.7e-33 112.4 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|219851888|ref|YP_002466320.1| - 0.02 14.5 0.1 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.9 gi|219851888|ref|YP_002466320.1| - 0.038 13.7 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Lactamase_B PF00753.22 gi|219851889|ref|YP_002466321.1| - 2e-29 102.6 1.2 2.4e-29 102.4 0.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219851889|ref|YP_002466321.1| - 2.2e-05 24.0 0.0 3.3e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.11 gi|219851890|ref|YP_002466322.1| - 3.4e-38 131.2 49.2 3.4e-38 131.2 34.1 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|219851890|ref|YP_002466322.1| - 0.019 13.3 0.5 0.019 13.3 0.3 4.1 2 1 0 3 3 3 0 MFS/sugar transport protein DUF742 PF05331.6 gi|219851890|ref|YP_002466322.1| - 0.094 12.3 0.4 0.25 10.9 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Anoctamin PF04547.7 gi|219851890|ref|YP_002466322.1| - 0.4 9.2 7.0 0.25 9.9 3.3 1.7 2 0 0 2 2 2 0 Calcium-activated chloride channel MarR PF01047.17 gi|219851891|ref|YP_002466323.1| - 2.3e-14 52.8 0.1 5.3e-14 51.6 0.0 1.7 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.2 gi|219851891|ref|YP_002466323.1| - 1.6e-11 43.6 0.0 2.3e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219851891|ref|YP_002466323.1| - 3.7e-11 43.1 0.0 6.5e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|219851891|ref|YP_002466323.1| - 4.3e-09 35.6 0.0 7.2e-09 34.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|219851891|ref|YP_002466323.1| - 1.1e-05 25.2 0.0 2.1e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|219851891|ref|YP_002466323.1| - 2.6e-05 23.8 0.0 5.5e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219851891|ref|YP_002466323.1| - 9.8e-05 21.8 0.0 0.00018 20.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|219851891|ref|YP_002466323.1| - 0.00012 22.0 0.1 0.00027 20.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|219851891|ref|YP_002466323.1| - 0.00027 20.2 0.0 0.00067 19.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|219851891|ref|YP_002466323.1| - 0.00081 18.9 0.0 0.002 17.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|219851891|ref|YP_002466323.1| - 0.0012 18.3 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain EAP30 PF04157.11 gi|219851891|ref|YP_002466323.1| - 0.0048 16.0 0.1 0.0083 15.2 0.0 1.6 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_20 PF12840.2 gi|219851891|ref|YP_002466323.1| - 0.0057 16.4 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.7 gi|219851891|ref|YP_002466323.1| - 0.0057 16.6 0.0 0.0089 16.0 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_10 PF04967.7 gi|219851891|ref|YP_002466323.1| - 0.011 15.3 0.3 0.029 13.9 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Rrf2 PF02082.15 gi|219851891|ref|YP_002466323.1| - 0.015 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator z-alpha PF02295.12 gi|219851891|ref|YP_002466323.1| - 0.022 14.5 0.3 0.33 10.7 0.0 2.2 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain PCI PF01399.22 gi|219851891|ref|YP_002466323.1| - 0.03 14.6 0.1 0.091 13.0 0.0 2.0 1 1 1 2 2 2 0 PCI domain HTH_DeoR PF08220.7 gi|219851891|ref|YP_002466323.1| - 0.035 13.6 0.0 0.086 12.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|219851891|ref|YP_002466323.1| - 0.038 13.9 0.1 0.2 11.6 0.0 2.1 1 1 1 2 2 2 0 Sulfolobus plasmid regulatory protein RPA_C PF08784.6 gi|219851891|ref|YP_002466323.1| - 0.039 14.3 0.0 0.072 13.5 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|219851891|ref|YP_002466323.1| - 0.042 13.6 0.0 0.098 12.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_39 PF14090.1 gi|219851891|ref|YP_002466323.1| - 0.05 13.0 0.0 0.16 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Nitroreductase PF00881.19 gi|219851892|ref|YP_002466324.1| - 5e-23 81.7 0.0 6.6e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|219851892|ref|YP_002466324.1| - 2.2e-09 36.4 12.3 1.2e-05 24.7 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219851892|ref|YP_002466324.1| - 3.6e-08 32.9 12.4 2e-05 24.2 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851892|ref|YP_002466324.1| - 1.3e-07 31.2 6.8 2.5e-07 30.3 4.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219851892|ref|YP_002466324.1| - 1.8e-07 31.4 9.4 3.9e-07 30.3 6.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851892|ref|YP_002466324.1| - 6.3e-07 30.0 4.7 0.0091 16.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219851892|ref|YP_002466324.1| - 1.5e-06 28.3 9.0 3.3e-06 27.2 6.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219851892|ref|YP_002466324.1| - 3e-06 27.1 8.1 6.1e-06 26.1 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851892|ref|YP_002466324.1| - 1.9e-05 24.2 13.1 0.012 15.4 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219851892|ref|YP_002466324.1| - 6.8e-05 22.6 8.3 0.00012 21.8 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219851892|ref|YP_002466324.1| - 0.00015 21.9 7.4 0.032 14.5 6.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219851892|ref|YP_002466324.1| - 0.00067 20.1 6.3 0.012 16.1 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219851892|ref|YP_002466324.1| - 0.0032 17.8 15.9 0.21 12.2 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219851892|ref|YP_002466324.1| - 0.0041 17.5 10.9 0.14 12.6 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851892|ref|YP_002466324.1| - 0.048 14.0 14.0 0.62 10.5 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219851892|ref|YP_002466324.1| - 0.3 11.4 12.5 0.7 10.3 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|219851892|ref|YP_002466324.1| - 3.8 7.7 4.8 0.76 9.9 0.2 2.0 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Methyltransf_31 PF13847.1 gi|219851893|ref|YP_002466325.1| - 2e-24 85.9 0.0 2.7e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851893|ref|YP_002466325.1| - 9.8e-18 64.7 0.0 1.8e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219851893|ref|YP_002466325.1| - 6.3e-15 55.4 0.0 1.1e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851893|ref|YP_002466325.1| - 3.2e-14 53.1 0.0 5.8e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219851893|ref|YP_002466325.1| - 5.3e-14 52.2 0.0 8e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219851893|ref|YP_002466325.1| - 7.1e-13 48.5 0.0 1.2e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|219851893|ref|YP_002466325.1| - 5.8e-12 45.6 0.1 1.4e-11 44.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219851893|ref|YP_002466325.1| - 6.2e-12 45.7 0.0 1.3e-11 44.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219851893|ref|YP_002466325.1| - 1.5e-11 43.8 0.0 2.2e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|219851893|ref|YP_002466325.1| - 6e-07 28.9 0.0 1.3e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain GCD14 PF08704.5 gi|219851893|ref|YP_002466325.1| - 8.8e-06 25.3 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.8 gi|219851893|ref|YP_002466325.1| - 0.00015 21.0 0.0 0.0002 20.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|219851893|ref|YP_002466325.1| - 0.00017 20.6 0.0 0.00088 18.3 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase CheR PF01739.13 gi|219851893|ref|YP_002466325.1| - 0.00021 20.6 0.0 0.053 12.8 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain NodS PF05401.6 gi|219851893|ref|YP_002466325.1| - 0.00025 20.5 0.0 0.00038 19.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_3 PF01596.12 gi|219851893|ref|YP_002466325.1| - 0.00041 19.4 0.0 0.00079 18.5 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase GidB PF02527.10 gi|219851893|ref|YP_002466325.1| - 0.0031 16.6 0.0 0.0069 15.5 0.0 1.6 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|219851893|ref|YP_002466325.1| - 0.0034 16.4 0.0 0.0059 15.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|219851893|ref|YP_002466325.1| - 0.0057 16.3 0.0 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|219851893|ref|YP_002466325.1| - 0.0068 17.2 0.0 0.026 15.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|219851893|ref|YP_002466325.1| - 0.0072 15.5 0.0 0.0098 15.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|219851893|ref|YP_002466325.1| - 0.0085 15.4 0.2 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|219851893|ref|YP_002466325.1| - 0.017 15.1 0.0 0.026 14.5 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|219851893|ref|YP_002466325.1| - 0.027 13.5 0.0 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|219851893|ref|YP_002466325.1| - 0.06 12.0 0.0 0.092 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) CmcI PF04989.7 gi|219851893|ref|YP_002466325.1| - 0.074 12.3 0.1 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 Cephalosporin hydroxylase HSDR_N PF04313.9 gi|219851894|ref|YP_002466326.1| - 3.2e-12 46.5 0.0 3.3e-08 33.5 0.1 2.6 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|219851894|ref|YP_002466326.1| - 7.7e-11 41.7 0.0 3.6e-09 36.3 0.0 2.2 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) zinc_ribbon_2 PF13240.1 gi|219851895|ref|YP_002466327.1| - 2.9e-11 42.4 13.5 3.2e-07 29.6 3.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219851895|ref|YP_002466327.1| - 4.4e-10 38.4 9.3 7.1e-05 21.8 0.8 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|219851895|ref|YP_002466327.1| - 2.1e-09 37.0 6.3 4.3e-09 36.0 4.4 1.6 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|219851895|ref|YP_002466327.1| - 0.0034 17.0 4.6 0.0034 17.0 3.2 2.6 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 C1_1 PF00130.17 gi|219851895|ref|YP_002466327.1| - 0.91 9.3 8.5 6.5 6.5 1.3 2.5 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|219851895|ref|YP_002466327.1| - 0.99 9.2 9.9 3 7.6 1.9 2.2 1 1 1 2 2 2 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|219851895|ref|YP_002466327.1| - 1 9.0 11.7 0.54 9.9 0.7 3.3 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-RanBP PF00641.13 gi|219851895|ref|YP_002466327.1| - 1.1 8.4 6.1 0.26 10.4 0.5 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C4pol PF14260.1 gi|219851895|ref|YP_002466327.1| - 1.4 8.9 5.3 2.3 8.2 0.2 2.5 1 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF2256 PF10013.4 gi|219851895|ref|YP_002466327.1| - 1.7 8.4 6.8 14 5.4 0.1 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Prok-RING_1 PF14446.1 gi|219851895|ref|YP_002466327.1| - 2.2 8.1 8.1 2.9 7.6 0.6 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 NMD3 PF04981.8 gi|219851895|ref|YP_002466327.1| - 2.7 7.0 4.9 0.79 8.7 1.3 1.6 1 1 0 1 1 1 0 NMD3 family Zn-ribbon_8 PF09723.5 gi|219851895|ref|YP_002466327.1| - 4 7.4 6.7 30 4.6 0.1 3.1 2 1 1 3 3 3 0 Zinc ribbon domain zf-tcix PF14952.1 gi|219851895|ref|YP_002466327.1| - 9.4 5.6 8.4 9.7 5.6 0.6 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Phage_integrase PF00589.17 gi|219851896|ref|YP_002466328.1| - 1.9e-21 76.5 0.0 2.2e-21 76.2 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family NHL PF01436.16 gi|219851898|ref|YP_002466330.1| - 4.1e-60 196.8 17.2 7.4e-11 41.4 0.0 6.5 6 0 0 6 6 6 6 NHL repeat SGL PF08450.7 gi|219851898|ref|YP_002466330.1| - 2.4e-23 82.8 13.6 0.00071 19.0 0.0 6.1 1 1 4 6 6 6 6 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219851898|ref|YP_002466330.1| - 5.2e-22 77.3 27.3 0.002 17.8 0.1 6.6 6 0 0 6 6 6 6 Beta-propeller repeat SdiA-regulated PF06977.6 gi|219851898|ref|YP_002466330.1| - 4.5e-05 22.5 1.1 12 4.7 0.0 5.0 4 1 2 6 6 6 2 SdiA-regulated Reg_prop PF07494.6 gi|219851898|ref|YP_002466330.1| - 0.00043 19.9 4.5 20 5.6 0.0 6.8 8 0 0 8 8 7 0 Two component regulator propeller EF-hand_1 PF00036.27 gi|219851898|ref|YP_002466330.1| - 0.0018 17.4 9.5 0.031 13.5 0.2 3.0 3 0 0 3 3 3 2 EF hand US22 PF02393.11 gi|219851898|ref|YP_002466330.1| - 0.0024 17.8 2.2 11 6.0 0.1 5.2 3 2 0 3 3 3 1 US22 like EF-hand_6 PF13405.1 gi|219851898|ref|YP_002466330.1| - 0.0029 17.3 5.1 0.23 11.4 0.1 2.9 2 1 0 2 2 2 2 EF-hand domain Pox_T4_N PF04491.7 gi|219851898|ref|YP_002466330.1| - 0.008 15.9 1.0 70 3.3 0.0 4.5 4 0 0 4 4 4 0 Poxvirus T4 protein, N terminus EF-hand_7 PF13499.1 gi|219851898|ref|YP_002466330.1| - 0.17 12.0 3.1 8.5 6.6 0.0 2.5 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219851898|ref|YP_002466330.1| - 0.4 10.3 5.2 0.46 10.1 0.2 2.5 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219851898|ref|YP_002466330.1| - 1.4 8.4 10.8 0.37 10.2 0.2 3.4 3 0 0 3 3 3 0 EF hand DUF2173 PF09941.4 gi|219851899|ref|YP_002466331.1| - 0.068 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) EF-hand_8 PF13833.1 gi|219851899|ref|YP_002466331.1| - 0.071 12.7 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 EF-hand domain pair HTH_34 PF13601.1 gi|219851902|ref|YP_002466334.1| - 0.075 13.0 0.9 0.089 12.8 0.6 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain SYCE1 PF15233.1 gi|219851902|ref|YP_002466334.1| - 0.69 9.8 6.3 0.73 9.7 4.4 1.0 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 MFS_1 PF07690.11 gi|219851903|ref|YP_002466335.1| - 1.7e-44 152.0 51.1 1.7e-44 152.0 35.4 2.2 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|219851903|ref|YP_002466335.1| - 1.9e-08 33.1 16.5 1.9e-08 33.1 11.5 2.6 2 1 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|219851903|ref|YP_002466335.1| - 6.4e-07 29.0 0.6 7.5e-06 25.6 0.1 3.1 1 1 1 2 2 2 1 MFS_1 like family GMC_oxred_N PF00732.14 gi|219851904|ref|YP_002466336.1| - 1.6e-71 240.8 0.0 2e-71 240.5 0.0 1.1 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.8 gi|219851904|ref|YP_002466336.1| - 7.1e-39 133.3 0.1 1.2e-38 132.6 0.1 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.19 gi|219851904|ref|YP_002466336.1| - 6.8e-07 28.4 0.0 0.00029 19.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|219851904|ref|YP_002466336.1| - 1.6e-05 23.9 0.9 0.027 13.4 0.0 2.9 2 2 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|219851904|ref|YP_002466336.1| - 0.0045 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|219851904|ref|YP_002466336.1| - 0.021 13.7 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.17 gi|219851904|ref|YP_002466336.1| - 0.12 11.1 0.1 0.52 9.1 0.0 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A HHH PF00633.18 gi|219851904|ref|YP_002466336.1| - 0.16 11.7 1.1 2.7 7.8 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif TrmB PF01978.14 gi|219851905|ref|YP_002466337.1| - 5.9e-17 61.1 0.0 1e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|219851905|ref|YP_002466337.1| - 0.018 14.0 0.1 0.023 13.6 0.0 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_24 PF13412.1 gi|219851905|ref|YP_002466337.1| - 0.047 13.0 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|219851905|ref|YP_002466337.1| - 0.056 12.8 0.0 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|219851905|ref|YP_002466337.1| - 0.057 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|219851905|ref|YP_002466337.1| - 0.061 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator zf-CDGSH PF09360.5 gi|219851906|ref|YP_002466338.1| - 1.5e-29 101.4 6.2 3.4e-15 55.5 1.2 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|219851906|ref|YP_002466338.1| - 3.2e-11 42.8 0.0 8.1e-11 41.5 0.0 1.7 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Rieske PF00355.21 gi|219851907|ref|YP_002466339.1| - 4.1e-14 51.9 0.0 5.8e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|219851907|ref|YP_002466339.1| - 1.8e-11 43.6 0.0 3.2e-11 42.8 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Linocin_M18 PF04454.7 gi|219851908|ref|YP_002466340.1| - 4.7e-75 251.7 0.0 5.3e-75 251.6 0.0 1.0 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Phage_capsid PF05065.8 gi|219851908|ref|YP_002466340.1| - 0.00084 18.6 0.1 0.0021 17.2 0.1 1.6 2 0 0 2 2 2 1 Phage capsid family Rubrerythrin PF02915.12 gi|219851909|ref|YP_002466341.1| - 9e-05 22.8 0.2 0.00011 22.5 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|219851909|ref|YP_002466341.1| - 0.003 17.7 0.2 0.0036 17.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Mn_catalase PF05067.7 gi|219851909|ref|YP_002466341.1| - 0.012 14.3 1.1 0.077 11.7 0.6 1.8 1 1 1 2 2 2 0 Manganese containing catalase COQ7 PF03232.8 gi|219851909|ref|YP_002466341.1| - 0.078 12.4 0.1 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 Cupredoxin_1 PF13473.1 gi|219851910|ref|YP_002466342.1| - 1.9e-11 43.7 0.1 3.3e-11 43.0 0.1 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|219851910|ref|YP_002466342.1| - 3.8e-06 27.0 0.2 7.6e-06 26.0 0.1 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|219851910|ref|YP_002466342.1| - 0.044 13.2 0.1 3.2 7.2 0.0 2.2 2 1 0 2 2 2 0 Multicopper oxidase PPC PF04151.10 gi|219851910|ref|YP_002466342.1| - 1.2 10.1 6.3 0.19 12.6 1.2 2.0 2 2 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain GSDH PF07995.6 gi|219851911|ref|YP_002466343.1| - 1.6e-38 132.6 0.0 2.7e-38 131.8 0.0 1.4 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase tRNA-synt_2c PF01411.14 gi|219851912|ref|YP_002466344.1| - 2.3e-119 399.1 0.0 2.9e-119 398.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|219851912|ref|YP_002466344.1| - 7.7e-13 48.1 1.8 1.9e-12 46.8 1.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|219851912|ref|YP_002466344.1| - 0.0013 18.3 0.5 0.0029 17.2 0.4 1.6 1 0 0 1 1 1 1 DHHA1 domain SWIM PF04434.12 gi|219851913|ref|YP_002466345.1| - 1e-07 31.2 0.8 1.7e-07 30.5 0.6 1.4 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.13 gi|219851914|ref|YP_002466346.1| - 1e-41 143.1 0.0 1.2e-41 142.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PTCRA PF15028.1 gi|219851914|ref|YP_002466346.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Pre-T-cell antigen receptor DUF39 PF01837.11 gi|219851915|ref|YP_002466347.1| - 1.8e-146 487.1 0.3 2.3e-146 486.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|219851915|ref|YP_002466347.1| - 1.3e-20 72.8 1.9 1.7e-12 46.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|219851916|ref|YP_002466348.1| - 2.3e-12 45.9 8.1 8.8e-08 31.4 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219851916|ref|YP_002466348.1| - 1.1e-09 38.5 10.1 1.9e-09 37.7 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219851916|ref|YP_002466348.1| - 1e-08 34.6 9.7 1.5e-05 24.6 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219851916|ref|YP_002466348.1| - 3e-08 33.8 21.3 2e-07 31.1 7.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219851916|ref|YP_002466348.1| - 5.6e-08 33.0 7.2 0.00068 20.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219851916|ref|YP_002466348.1| - 7.1e-08 32.1 7.0 1.3e-07 31.4 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219851916|ref|YP_002466348.1| - 1.3e-07 31.1 13.0 1.8e-05 24.3 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219851916|ref|YP_002466348.1| - 3e-06 26.9 11.8 5.8e-05 22.7 8.5 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219851916|ref|YP_002466348.1| - 7.5e-06 26.6 7.6 0.0061 17.2 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|219851916|ref|YP_002466348.1| - 8.1e-06 26.0 6.9 0.0031 17.8 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219851916|ref|YP_002466348.1| - 1.5e-05 24.9 12.7 0.00048 20.0 9.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219851916|ref|YP_002466348.1| - 7.7e-05 22.7 14.6 0.012 15.9 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.5 gi|219851916|ref|YP_002466348.1| - 0.00018 21.0 0.0 0.00022 20.7 0.0 1.1 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.1 gi|219851916|ref|YP_002466348.1| - 0.00054 20.4 14.5 0.017 15.6 1.7 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219851916|ref|YP_002466348.1| - 0.0021 18.3 12.5 0.056 13.8 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|219851916|ref|YP_002466348.1| - 0.0049 16.7 2.7 0.028 14.3 1.9 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219851916|ref|YP_002466348.1| - 0.01 16.3 19.6 0.011 16.2 4.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ApbE PF02424.10 gi|219851917|ref|YP_002466349.1| - 1.4e-22 80.1 8.6 1.7e-21 76.6 5.9 2.1 1 1 0 1 1 1 1 ApbE family PocR PF10114.4 gi|219851918|ref|YP_002466350.1| - 9.7e-61 203.9 0.0 1.9e-59 199.6 0.0 2.9 3 0 0 3 3 3 1 Sensory domain found in PocR PAS_9 PF13426.1 gi|219851918|ref|YP_002466350.1| - 1.8e-52 176.0 0.2 1.6e-14 54.1 0.0 6.6 7 0 0 7 7 7 5 PAS domain PAS_4 PF08448.5 gi|219851918|ref|YP_002466350.1| - 2e-43 146.9 4.3 1.2e-12 47.8 0.0 5.8 6 0 0 6 6 5 5 PAS fold PAS PF00989.19 gi|219851918|ref|YP_002466350.1| - 4.1e-30 103.8 0.1 1.5e-12 47.2 0.0 5.6 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|219851918|ref|YP_002466350.1| - 1.7e-23 81.5 0.0 7.2e-06 25.6 0.0 5.3 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.19 gi|219851918|ref|YP_002466350.1| - 1.3e-20 73.4 0.0 9.9e-20 70.6 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_3 PF08447.6 gi|219851918|ref|YP_002466350.1| - 8.9e-16 57.7 0.0 0.00024 21.1 0.0 5.7 5 0 0 5 5 5 2 PAS fold HATPase_c PF02518.21 gi|219851918|ref|YP_002466350.1| - 1.2e-09 37.8 0.1 2e-08 33.9 0.0 2.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|219851918|ref|YP_002466350.1| - 0.00023 21.1 2.5 4.3 7.3 0.0 6.1 5 3 0 5 5 5 1 PAS fold VIT1 PF01988.14 gi|219851918|ref|YP_002466350.1| - 0.077 12.4 3.5 3.2 7.2 0.1 2.4 2 0 0 2 2 2 0 VIT family GAS PF13851.1 gi|219851918|ref|YP_002466350.1| - 0.098 11.8 15.1 0.21 10.7 1.8 2.5 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Init_tRNA_PT PF04179.7 gi|219851918|ref|YP_002466350.1| - 0.29 9.9 1.9 0.82 8.4 0.2 2.2 2 0 0 2 2 2 0 Initiator tRNA phosphoribosyl transferase Sipho_Gp157 PF05565.6 gi|219851918|ref|YP_002466350.1| - 0.69 9.4 8.7 1.9 8.0 0.2 2.8 2 0 0 2 2 2 0 Siphovirus Gp157 DUF724 PF05266.9 gi|219851918|ref|YP_002466350.1| - 0.77 9.3 8.7 0.19 11.3 1.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF724) V_ATPase_I PF01496.14 gi|219851918|ref|YP_002466350.1| - 1.5 6.5 4.5 1.8 6.2 0.2 2.1 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|219851918|ref|YP_002466350.1| - 1.7 8.9 16.9 3.8 7.8 1.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF904) Asn_synthase PF00733.16 gi|219851920|ref|YP_002466352.1| - 1.4e-37 129.5 0.8 2.7e-36 125.3 0.6 2.0 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|219851920|ref|YP_002466352.1| - 0.0036 16.2 0.0 0.0052 15.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Pdase_C33_assoc PF14756.1 gi|219851920|ref|YP_002466352.1| - 0.07 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase_C33-associated domain QueC PF06508.8 gi|219851920|ref|YP_002466352.1| - 0.093 12.0 0.7 0.72 9.1 0.1 2.1 1 1 0 2 2 2 0 Queuosine biosynthesis protein QueC Glu-tRNAGln PF02686.10 gi|219851921|ref|YP_002466353.1| - 3.7e-16 58.6 0.0 6.6e-16 57.8 0.0 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit DUF4089 PF13318.1 gi|219851921|ref|YP_002466353.1| - 0.017 15.4 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4089) Amidase PF01425.16 gi|219851922|ref|YP_002466354.1| - 3.8e-142 474.2 1.2 4.4e-142 474.0 0.8 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|219851923|ref|YP_002466355.1| - 8e-113 376.0 0.0 1.1e-112 375.6 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|219851923|ref|YP_002466355.1| - 1.4e-32 112.4 0.0 2.2e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.15 gi|219851924|ref|YP_002466356.1| - 2.9e-107 358.9 0.0 7.1e-107 357.6 0.0 1.6 2 0 0 2 2 2 1 DNA topoisomerase HHH_5 PF14520.1 gi|219851924|ref|YP_002466356.1| - 1.4e-15 57.2 1.4 6.8e-05 22.9 0.0 4.8 5 0 0 5 5 5 3 Helix-hairpin-helix domain Toprim PF01751.17 gi|219851924|ref|YP_002466356.1| - 1.4e-14 53.8 0.1 3.1e-14 52.7 0.1 1.6 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|219851924|ref|YP_002466356.1| - 2e-09 36.7 0.6 5e-09 35.5 0.4 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger ALIX_LYPXL_bnd PF13949.1 gi|219851924|ref|YP_002466356.1| - 0.02 13.8 0.5 0.04 12.8 0.4 1.4 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV PcrB PF01884.12 gi|219851925|ref|YP_002466357.1| - 3.9e-56 189.9 0.0 4.2e-56 189.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family B12-binding PF02310.14 gi|219851925|ref|YP_002466357.1| - 0.023 14.5 0.0 4.9 7.0 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain Trp_syntA PF00290.15 gi|219851925|ref|YP_002466357.1| - 0.034 12.6 0.0 0.064 11.7 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|219851925|ref|YP_002466357.1| - 0.036 13.3 0.0 0.16 11.1 0.0 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein SpoU_methylase PF00588.14 gi|219851926|ref|YP_002466358.1| - 2.7e-27 95.4 0.0 3.5e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family dUTPase PF00692.14 gi|219851927|ref|YP_002466359.1| - 3e-13 49.3 0.0 4.8e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|219851927|ref|YP_002466359.1| - 1.3e-09 36.9 0.0 2.6e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) tRNA-Thr_ED PF08915.6 gi|219851928|ref|YP_002466360.1| - 8.3e-52 174.8 0.1 1.4e-51 174.1 0.1 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|219851928|ref|YP_002466360.1| - 1.8e-20 73.2 0.3 3.5e-20 72.2 0.1 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|219851928|ref|YP_002466360.1| - 3.6e-20 71.7 0.1 6.6e-20 70.8 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain B12-binding PF02310.14 gi|219851929|ref|YP_002466361.1| - 7e-16 58.2 0.1 1.2e-15 57.4 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|219851929|ref|YP_002466361.1| - 0.0068 16.4 0.2 0.017 15.1 0.1 1.6 2 0 0 2 2 2 1 B12 binding domain SpoVAD PF07451.6 gi|219851929|ref|YP_002466361.1| - 0.046 12.1 0.0 0.057 11.8 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) URO-D PF01208.12 gi|219851930|ref|YP_002466362.1| - 2.3e-74 250.4 0.0 2.5e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF4445 PF14574.1 gi|219851931|ref|YP_002466363.1| - 5.1e-114 380.7 0.0 6.6e-114 380.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|219851931|ref|YP_002466363.1| - 2.5e-11 43.1 0.2 5.2e-11 42.1 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain GAF_2 PF13185.1 gi|219851932|ref|YP_002466364.1| - 9.1e-45 152.7 0.0 1e-23 84.4 0.0 3.5 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.1 gi|219851932|ref|YP_002466364.1| - 1.1e-43 147.8 1.0 7.5e-13 48.7 0.0 5.1 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|219851932|ref|YP_002466364.1| - 1.6e-28 98.6 0.2 1.9e-09 37.3 0.0 5.0 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|219851932|ref|YP_002466364.1| - 5.5e-28 95.8 0.1 4.7e-05 23.0 0.0 5.2 5 0 0 5 5 5 4 PAS domain GAF_3 PF13492.1 gi|219851932|ref|YP_002466364.1| - 3.6e-15 56.2 0.0 1.5e-06 28.3 0.0 3.5 3 0 0 3 3 3 3 GAF domain PAS_3 PF08447.6 gi|219851932|ref|YP_002466364.1| - 6e-15 55.1 0.0 9.7e-06 25.6 0.0 4.1 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|219851932|ref|YP_002466364.1| - 8.1e-15 54.8 0.1 0.00044 20.2 0.0 5.0 6 0 0 6 6 6 3 PAS fold HATPase_c PF02518.21 gi|219851932|ref|YP_002466364.1| - 2.6e-13 49.6 0.1 7.6e-13 48.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|219851932|ref|YP_002466364.1| - 3.1e-08 33.8 0.1 0.017 15.2 0.0 3.0 3 0 0 3 3 3 2 GAF domain PAS_7 PF12860.2 gi|219851932|ref|YP_002466364.1| - 0.001 19.0 3.5 0.0056 16.6 0.0 3.6 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.1 gi|219851932|ref|YP_002466364.1| - 0.0031 17.1 0.0 0.0097 15.5 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|219851932|ref|YP_002466364.1| - 0.011 15.3 0.0 0.036 13.7 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sulfate_transp PF00916.15 gi|219851933|ref|YP_002466365.1| - 0.0025 16.8 12.7 0.0025 16.8 8.8 2.9 2 1 1 3 3 3 1 Sulfate transporter family BcrAD_BadFG PF01869.15 gi|219851934|ref|YP_002466366.1| - 5.5e-60 202.9 4.6 6.6e-60 202.7 3.2 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.20 gi|219851934|ref|YP_002466366.1| - 0.0012 18.4 0.0 0.0067 15.9 0.0 1.9 2 0 0 2 2 2 1 Glycoprotease family CmcH_NodU PF02543.10 gi|219851934|ref|YP_002466366.1| - 0.0063 15.6 0.0 0.0082 15.3 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase FtsA PF14450.1 gi|219851934|ref|YP_002466366.1| - 0.03 14.1 1.6 0.27 11.0 0.1 2.5 2 1 0 2 2 2 0 Cell division protein FtsA FGGY_C PF02782.11 gi|219851934|ref|YP_002466366.1| - 0.031 13.8 1.4 0.067 12.7 1.0 1.7 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain MreB_Mbl PF06723.8 gi|219851934|ref|YP_002466366.1| - 0.83 8.1 6.0 3 6.3 0.1 2.7 2 1 1 3 3 3 0 MreB/Mbl protein HGD-D PF06050.8 gi|219851935|ref|YP_002466367.1| - 2.5e-96 322.5 0.0 2.9e-96 322.3 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component DUF1847 PF08901.6 gi|219851935|ref|YP_002466367.1| - 0.048 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) Claudin_2 PF13903.1 gi|219851936|ref|YP_002466368.1| - 0.2 11.3 2.5 0.29 10.8 1.7 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction HemX PF04375.9 gi|219851936|ref|YP_002466368.1| - 0.55 8.7 3.0 0.66 8.5 2.1 1.1 1 0 0 1 1 1 0 HemX RibD_C PF01872.12 gi|219851937|ref|YP_002466369.1| - 7e-55 185.7 0.2 7.9e-55 185.5 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ThiF PF00899.16 gi|219851938|ref|YP_002466370.1| - 3.2e-42 143.5 0.2 4.7e-42 143.0 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|219851938|ref|YP_002466370.1| - 4.1e-21 74.3 0.0 7.4e-21 73.5 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain 3HCDH_N PF02737.13 gi|219851938|ref|YP_002466370.1| - 0.0067 16.0 0.1 0.0091 15.6 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|219851938|ref|YP_002466370.1| - 0.014 14.7 0.3 0.033 13.5 0.2 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|219851938|ref|YP_002466370.1| - 0.018 13.9 0.2 0.025 13.5 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase adh_short PF00106.20 gi|219851938|ref|YP_002466370.1| - 0.054 13.4 0.4 0.072 13.0 0.3 1.4 1 1 0 1 1 1 0 short chain dehydrogenase Saccharop_dh PF03435.13 gi|219851938|ref|YP_002466370.1| - 0.07 12.1 0.1 0.095 11.6 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|219851938|ref|YP_002466370.1| - 0.082 13.0 0.1 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|219851938|ref|YP_002466370.1| - 0.22 10.6 0.0 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiS PF02597.15 gi|219851939|ref|YP_002466371.1| - 1.6e-14 54.0 0.3 1.8e-14 53.8 0.2 1.0 1 0 0 1 1 1 1 ThiS family UPF0181 PF03701.9 gi|219851939|ref|YP_002466371.1| - 0.075 12.3 0.0 0.33 10.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) Lambda_tail_I PF06805.7 gi|219851939|ref|YP_002466371.1| - 0.13 12.0 0.3 0.19 11.5 0.2 1.4 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I MoaE PF02391.12 gi|219851940|ref|YP_002466372.1| - 3.5e-31 107.4 2.4 4.6e-31 107.0 1.7 1.1 1 0 0 1 1 1 1 MoaE protein AMP-binding_C PF13193.1 gi|219851940|ref|YP_002466372.1| - 0.17 12.8 0.9 0.34 11.9 0.2 1.7 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain DisA_N PF02457.11 gi|219851941|ref|YP_002466373.1| - 1.9e-26 91.5 0.3 3.2e-26 90.8 0.2 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF4366 PF14283.1 gi|219851941|ref|YP_002466373.1| - 1.3 8.4 5.2 15 4.9 2.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) Ribosomal_S27e PF01667.12 gi|219851942|ref|YP_002466374.1| - 0.00037 19.9 1.5 0.00072 19.0 1.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 Nudix_N_2 PF14803.1 gi|219851942|ref|YP_002466374.1| - 0.00053 19.6 6.3 0.28 10.9 0.2 3.3 4 0 0 4 4 4 2 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|219851942|ref|YP_002466374.1| - 0.00053 19.5 2.3 0.00072 19.1 1.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|219851942|ref|YP_002466374.1| - 0.00078 19.2 2.4 0.00078 19.2 1.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|219851942|ref|YP_002466374.1| - 0.00091 18.6 1.6 0.00091 18.6 1.1 2.4 2 1 0 2 2 1 1 zinc-ribbon domain RecR PF02132.10 gi|219851942|ref|YP_002466374.1| - 0.00099 18.4 3.2 0.34 10.3 0.4 2.4 2 0 0 2 2 2 2 RecR protein zf-tcix PF14952.1 gi|219851942|ref|YP_002466374.1| - 0.0022 17.2 1.0 0.09 12.1 0.1 2.4 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding DUF2116 PF09889.4 gi|219851942|ref|YP_002466374.1| - 0.0025 17.5 6.1 0.075 12.8 1.1 2.3 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.6 gi|219851942|ref|YP_002466374.1| - 0.0052 16.2 2.6 0.0052 16.2 1.8 2.1 2 1 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain FYVE PF01363.16 gi|219851942|ref|YP_002466374.1| - 0.016 15.0 5.3 0.024 14.5 3.7 1.3 1 1 0 1 1 1 0 FYVE zinc finger Auto_anti-p27 PF06677.7 gi|219851942|ref|YP_002466374.1| - 0.018 14.8 6.7 0.29 10.9 0.1 2.6 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.8 gi|219851942|ref|YP_002466374.1| - 0.026 14.0 1.5 0.056 12.9 1.1 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|219851942|ref|YP_002466374.1| - 0.042 13.0 6.6 0.96 8.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|219851942|ref|YP_002466374.1| - 0.063 13.0 3.6 0.1 12.3 2.5 1.5 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|219851942|ref|YP_002466374.1| - 0.065 13.1 2.4 0.41 10.6 1.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain IBR PF01485.16 gi|219851942|ref|YP_002466374.1| - 0.068 13.0 1.0 0.068 13.0 0.7 2.0 1 1 1 2 2 2 0 IBR domain zf-dskA_traR PF01258.12 gi|219851942|ref|YP_002466374.1| - 0.1 12.3 3.3 5.7 6.7 0.1 2.7 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DUF1272 PF06906.6 gi|219851942|ref|YP_002466374.1| - 0.33 10.8 4.9 1.1 9.1 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF164 PF02591.10 gi|219851942|ref|YP_002466374.1| - 0.42 10.4 3.5 7.9 6.4 0.2 2.4 1 1 1 2 2 2 0 Putative zinc ribbon domain C1_3 PF07649.7 gi|219851942|ref|YP_002466374.1| - 0.82 9.7 5.3 1.4 9.0 0.4 2.6 2 0 0 2 2 2 0 C1-like domain Prok-RING_1 PF14446.1 gi|219851942|ref|YP_002466374.1| - 1.5 8.5 12.0 7.2 6.4 8.3 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|219851942|ref|YP_002466374.1| - 1.6 8.1 7.1 0.79 9.0 0.4 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF329 PF03884.9 gi|219851942|ref|YP_002466374.1| - 1.9 8.1 5.3 3.5 7.2 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF329) YhfH PF14149.1 gi|219851942|ref|YP_002466374.1| - 2.8 7.7 7.6 1.3 8.9 0.3 2.4 1 1 1 2 2 2 0 YhfH-like protein Lar_restr_allev PF14354.1 gi|219851942|ref|YP_002466374.1| - 6.5 7.1 9.0 19 5.6 6.2 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|219851942|ref|YP_002466374.1| - 7.2 6.1 8.5 17 5.0 0.9 3.0 2 1 1 3 3 3 0 A2L zinc ribbon domain AMP-binding PF00501.23 gi|219851943|ref|YP_002466375.1| - 7.2e-93 311.2 0.1 8.7e-93 310.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219851943|ref|YP_002466375.1| - 1.6e-22 80.1 0.6 1.1e-21 77.5 0.0 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain TBP PF00352.16 gi|219851944|ref|YP_002466376.1| - 3.8e-60 199.2 0.0 1.1e-29 101.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|219851944|ref|YP_002466376.1| - 0.00011 22.2 0.0 0.0075 16.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) EPSP_synthase PF00275.15 gi|219851944|ref|YP_002466376.1| - 0.0018 16.8 0.0 0.0023 16.4 0.0 1.2 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PBP PF01161.15 gi|219851945|ref|YP_002466377.1| - 1.6e-30 105.8 0.0 1.9e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PBP PF01161.15 gi|219851946|ref|YP_002466378.1| - 1.5e-21 76.7 0.0 1.8e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.16 gi|219851947|ref|YP_002466379.1| - 2.7e-20 73.2 0.9 4e-20 72.6 0.6 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|219851947|ref|YP_002466379.1| - 7.4e-09 35.5 0.4 4.6e-07 29.7 0.0 3.0 3 1 0 3 3 3 1 B12 binding domain PyrI_C PF02748.10 gi|219851947|ref|YP_002466379.1| - 1.6 8.1 4.1 4.7 6.7 0.0 2.7 3 0 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Metallophos_2 PF12850.2 gi|219851948|ref|YP_002466380.1| - 3.5e-16 59.4 0.1 4.7e-16 59.0 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|219851948|ref|YP_002466380.1| - 1e-08 34.6 1.0 2.6e-06 26.7 0.1 2.8 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|219851948|ref|YP_002466380.1| - 2.2e-07 30.5 4.1 3e-06 26.7 2.9 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CheW PF01584.14 gi|219851949|ref|YP_002466381.1| - 1.2e-25 89.6 2.7 1.4e-25 89.3 1.9 1.1 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.13 gi|219851950|ref|YP_002466382.1| - 1.8e-50 170.9 0.0 2.7e-50 170.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain TPR_11 PF13414.1 gi|219851950|ref|YP_002466382.1| - 6.1e-13 48.2 0.4 6.1e-07 28.9 0.0 3.2 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|219851950|ref|YP_002466382.1| - 2.3e-11 42.7 0.6 0.13 12.2 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219851950|ref|YP_002466382.1| - 1.1e-10 41.8 1.8 9.4e-05 22.9 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219851950|ref|YP_002466382.1| - 3e-09 37.0 0.1 2.7e-06 27.6 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219851950|ref|YP_002466382.1| - 1.4e-07 31.3 2.4 0.00061 19.6 0.0 3.0 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219851950|ref|YP_002466382.1| - 3.9e-06 26.2 0.6 0.38 10.4 0.0 4.2 4 1 0 4 4 4 2 Tetratricopeptide repeat Methyltransf_23 PF13489.1 gi|219851950|ref|YP_002466382.1| - 8.3e-06 25.6 0.0 3.5e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219851950|ref|YP_002466382.1| - 1e-05 25.9 0.0 0.00022 21.6 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain TPR_17 PF13431.1 gi|219851950|ref|YP_002466382.1| - 1.7e-05 24.6 0.1 0.25 11.6 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219851950|ref|YP_002466382.1| - 6e-05 23.3 3.7 3.4 8.5 0.1 4.2 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|219851950|ref|YP_002466382.1| - 0.00012 22.1 0.5 0.026 14.9 0.1 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219851950|ref|YP_002466382.1| - 0.00022 20.7 1.0 1 9.3 0.1 3.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|219851950|ref|YP_002466382.1| - 0.00036 20.3 3.9 1.3 9.0 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat Methyltransf_25 PF13649.1 gi|219851950|ref|YP_002466382.1| - 0.00052 20.3 0.0 0.0021 18.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219851950|ref|YP_002466382.1| - 0.00092 19.7 0.0 0.0045 17.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Apc3 PF12895.2 gi|219851950|ref|YP_002466382.1| - 0.0016 18.5 0.0 0.0033 17.5 0.0 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|219851950|ref|YP_002466382.1| - 0.049 13.7 0.2 25 5.0 0.0 3.2 1 1 2 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219851950|ref|YP_002466382.1| - 0.15 12.5 0.5 1.9e+02 2.8 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219851950|ref|YP_002466382.1| - 0.18 11.6 3.5 0.19 11.5 0.3 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Methyltransf_31 PF13847.1 gi|219851950|ref|YP_002466382.1| - 0.2 11.2 0.0 19 4.8 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain CheW PF01584.14 gi|219851951|ref|YP_002466383.1| - 1.6e-30 105.3 0.1 2.1e-30 104.9 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|219851952|ref|YP_002466384.1| - 3e-41 141.3 25.7 3e-41 141.3 17.8 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.2 gi|219851952|ref|YP_002466384.1| - 1.3e-38 132.2 0.9 1.3e-38 132.2 0.6 3.6 3 1 0 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.20 gi|219851952|ref|YP_002466384.1| - 7.3e-13 48.5 1.6 7.3e-13 48.5 1.1 4.4 5 0 0 5 5 5 1 HAMP domain TarH PF02203.10 gi|219851952|ref|YP_002466384.1| - 2.7e-12 46.8 0.1 2.7e-12 46.8 0.1 3.8 3 1 0 4 4 4 1 Tar ligand binding domain homologue TrbL PF04610.9 gi|219851952|ref|YP_002466384.1| - 0.006 16.3 0.4 0.006 16.3 0.3 3.2 3 0 0 3 3 3 1 TrbL/VirB6 plasmid conjugal transfer protein Pepsin-I3 PF06394.8 gi|219851952|ref|YP_002466384.1| - 0.047 13.3 1.4 0.079 12.6 0.1 2.0 2 0 0 2 2 2 0 Pepsin inhibitor-3-like repeated domain Tetraspannin PF00335.15 gi|219851952|ref|YP_002466384.1| - 0.095 11.9 0.9 0.45 9.7 0.0 2.0 2 0 0 2 2 2 0 Tetraspanin family Sensor PF13796.1 gi|219851952|ref|YP_002466384.1| - 0.41 10.2 5.7 0.099 12.2 0.5 2.0 2 0 0 2 2 2 0 Putative sensor DUF4199 PF13858.1 gi|219851952|ref|YP_002466384.1| - 1.3 8.8 0.0 1.3 8.8 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF4199) LOH1CR12 PF10158.4 gi|219851952|ref|YP_002466384.1| - 7.6 6.3 7.6 0.71 9.6 0.6 2.9 3 2 0 3 3 3 0 Tumour suppressor protein BLOC1_2 PF10046.4 gi|219851952|ref|YP_002466384.1| - 8.3 6.6 13.5 0.28 11.3 1.4 3.4 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mnd1 PF03962.10 gi|219851952|ref|YP_002466384.1| - 8.7 5.9 17.5 2.2 7.9 2.7 3.8 2 2 1 3 3 3 0 Mnd1 family Response_reg PF00072.19 gi|219851953|ref|YP_002466385.1| - 6.9e-24 84.0 0.1 1.8e-23 82.6 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.14 gi|219851953|ref|YP_002466385.1| - 5.1e-20 71.3 1.0 1.2e-19 70.1 0.7 1.7 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.21 gi|219851953|ref|YP_002466385.1| - 2.7e-17 62.5 0.1 6.6e-17 61.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|219851953|ref|YP_002466385.1| - 2.6e-16 59.4 0.8 2.6e-16 59.4 0.6 2.8 4 0 0 4 4 4 1 Hpt domain HATPase_c_3 PF13589.1 gi|219851953|ref|YP_002466385.1| - 0.0026 17.4 0.0 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|219851953|ref|YP_002466385.1| - 0.035 13.9 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain H-kinase_dim PF02895.9 gi|219851953|ref|YP_002466385.1| - 0.068 13.5 2.9 0.14 12.4 0.6 2.8 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain SERTA PF06031.8 gi|219851953|ref|YP_002466385.1| - 0.088 12.1 0.4 0.42 9.9 0.0 2.3 2 0 0 2 2 2 0 SERTA motif Blo-t-5 PF11642.3 gi|219851953|ref|YP_002466385.1| - 0.49 10.1 4.7 0.33 10.7 0.2 2.6 3 0 0 3 3 3 0 Mite allergen Blo t 5 CheB_methylest PF01339.12 gi|219851954|ref|YP_002466386.1| - 3e-59 199.5 0.1 6.5e-59 198.4 0.1 1.6 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|219851954|ref|YP_002466386.1| - 3.1e-20 72.2 0.1 8.3e-19 67.6 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.19 gi|219851955|ref|YP_002466387.1| - 3.3e-29 101.1 0.1 1.6e-28 98.9 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219851955|ref|YP_002466387.1| - 4.7e-19 68.1 0.2 8.9e-19 67.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|219851955|ref|YP_002466387.1| - 2.9e-17 63.5 0.0 6.1e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219851955|ref|YP_002466387.1| - 1.3e-11 44.7 0.0 2.5e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|219851955|ref|YP_002466387.1| - 6.5e-07 29.2 0.3 1.7e-06 27.9 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|219851955|ref|YP_002466387.1| - 3.9e-06 27.0 0.0 1.5e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|219851955|ref|YP_002466387.1| - 0.0026 17.5 0.0 0.0049 16.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|219851955|ref|YP_002466387.1| - 0.0089 15.6 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NaeI PF09126.5 gi|219851955|ref|YP_002466387.1| - 0.059 12.0 0.0 0.097 11.2 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease NaeI Vps16_N PF04841.8 gi|219851956|ref|YP_002466388.1| - 0.015 13.8 0.1 0.017 13.7 0.1 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region DUF262 PF03235.9 gi|219851957|ref|YP_002466389.1| - 1.8e-34 119.6 2.5 3.3e-34 118.8 1.8 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|219851957|ref|YP_002466389.1| - 8.5e-28 96.9 0.0 1.8e-27 95.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) ODC_AZ PF02100.12 gi|219851958|ref|YP_002466390.1| - 0.054 12.9 0.0 4 6.9 0.0 2.9 3 0 0 3 3 3 0 Ornithine decarboxylase antizyme PAS_9 PF13426.1 gi|219851959|ref|YP_002466391.1| - 8.1e-80 263.9 0.8 2.8e-13 50.1 0.0 6.6 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|219851959|ref|YP_002466391.1| - 6.9e-62 206.2 4.3 1.3e-12 47.4 0.0 7.0 7 1 0 7 7 7 6 PAS fold PAS_4 PF08448.5 gi|219851959|ref|YP_002466391.1| - 5.1e-58 193.8 0.2 8e-13 48.3 0.0 8.1 6 3 0 6 6 6 6 PAS fold PAS_3 PF08447.6 gi|219851959|ref|YP_002466391.1| - 1e-42 144.1 3.7 4.4e-11 42.7 0.0 7.5 6 1 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|219851959|ref|YP_002466391.1| - 6.3e-35 117.8 0.0 1.2e-06 28.1 0.0 6.6 6 0 0 6 6 6 5 PAS domain Response_reg PF00072.19 gi|219851959|ref|YP_002466391.1| - 6.7e-20 71.1 0.0 1.9e-19 69.6 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|219851959|ref|YP_002466391.1| - 2.7e-16 60.3 0.2 3.5e-13 50.3 0.0 3.4 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.2 gi|219851959|ref|YP_002466391.1| - 6.6e-10 39.0 8.5 0.099 12.6 0.0 7.7 10 0 0 10 10 10 2 PAS fold GAF_3 PF13492.1 gi|219851959|ref|YP_002466391.1| - 1.7e-05 24.8 0.0 0.00021 21.4 0.0 2.6 3 0 0 3 3 3 1 GAF domain IclR PF01614.13 gi|219851959|ref|YP_002466391.1| - 0.0003 20.4 1.5 0.011 15.3 0.0 3.2 4 0 0 4 4 4 1 Bacterial transcriptional regulator PAS_10 PF13596.1 gi|219851959|ref|YP_002466391.1| - 0.00044 20.4 4.8 1.2 9.3 0.0 6.9 8 1 1 9 9 9 1 PAS domain Cache_1 PF02743.13 gi|219851959|ref|YP_002466391.1| - 0.021 14.3 0.0 0.5 9.9 0.0 3.0 3 0 0 3 3 3 0 Cache domain Pectate_lyase_3 PF12708.2 gi|219851960|ref|YP_002466392.1| - 3.6e-49 167.9 7.1 3.6e-49 167.9 4.9 2.8 3 0 0 3 3 3 1 Pectate lyase superfamily protein PKD PF00801.15 gi|219851960|ref|YP_002466392.1| - 9.1e-17 60.5 7.2 1e-16 60.3 3.6 2.3 2 0 0 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|219851960|ref|YP_002466392.1| - 1.2e-12 47.8 25.7 2.2e-07 30.7 9.1 3.1 1 1 2 3 3 3 3 Right handed beta helix region End_N_terminal PF12218.3 gi|219851960|ref|YP_002466392.1| - 0.0045 16.4 0.0 0.013 14.9 0.0 1.8 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Flavokinase PF01687.12 gi|219851960|ref|YP_002466392.1| - 0.45 10.3 3.3 2.9 7.7 0.1 2.8 3 0 0 3 3 3 0 Riboflavin kinase UbiA PF01040.13 gi|219851962|ref|YP_002466394.1| - 4.9e-38 130.8 23.9 6.2e-38 130.4 16.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF417 PF04224.7 gi|219851962|ref|YP_002466394.1| - 0.014 14.7 3.9 0.61 9.4 0.1 2.3 1 1 0 2 2 2 0 Protein of unknown function, DUF417 CBM_6 PF03422.10 gi|219851966|ref|YP_002466398.1| - 1.1e-35 122.5 6.7 4.5e-20 72.0 0.1 3.5 3 0 0 3 3 3 2 Carbohydrate binding module (family 6) NosD PF05048.8 gi|219851966|ref|YP_002466398.1| - 1.2e-34 119.4 18.3 2.1e-30 105.6 9.0 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219851966|ref|YP_002466398.1| - 1.7e-17 63.6 27.4 2.1e-10 40.5 9.6 3.3 2 1 1 3 3 3 2 Right handed beta helix region EF-hand_1 PF00036.27 gi|219851966|ref|YP_002466398.1| - 6.2 6.3 6.2 1.4 8.4 0.2 2.9 3 0 0 3 3 3 0 EF hand CBM_6 PF03422.10 gi|219851968|ref|YP_002466400.1| - 1.2e-54 183.8 9.6 5e-20 71.9 0.5 3.8 3 0 0 3 3 3 3 Carbohydrate binding module (family 6) NosD PF05048.8 gi|219851968|ref|YP_002466400.1| - 9.7e-35 119.8 23.5 3.7e-30 104.8 7.9 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219851968|ref|YP_002466400.1| - 2e-16 60.1 30.4 5.3e-08 32.7 6.3 2.6 1 1 1 2 2 2 2 Right handed beta helix region Endotoxin_C PF03944.9 gi|219851968|ref|YP_002466400.1| - 0.027 14.5 0.0 3.6 7.7 0.0 3.2 3 0 0 3 3 3 0 delta endotoxin DUF4265 PF14085.1 gi|219851968|ref|YP_002466400.1| - 0.041 13.6 0.0 1.7 8.4 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4265) NHL PF01436.16 gi|219851969|ref|YP_002466401.1| - 4e-117 376.6 44.6 3.4e-12 45.6 0.1 12.5 12 0 0 12 12 12 12 NHL repeat SBBP PF06739.6 gi|219851969|ref|YP_002466401.1| - 1.2e-40 136.9 55.1 0.00062 19.5 0.1 12.7 12 0 0 12 12 12 12 Beta-propeller repeat SGL PF08450.7 gi|219851969|ref|YP_002466401.1| - 1e-32 113.4 28.0 1.6e-05 24.3 0.3 10.0 1 1 8 9 9 9 8 SMP-30/Gluconolaconase/LRE-like region SdiA-regulated PF06977.6 gi|219851969|ref|YP_002466401.1| - 1.1e-18 67.1 1.0 0.34 9.8 0.0 10.4 9 2 2 11 11 11 5 SdiA-regulated MRJP PF03022.11 gi|219851969|ref|YP_002466401.1| - 4.9e-07 29.2 1.2 0.026 13.7 0.0 5.1 5 1 1 6 6 6 2 Major royal jelly protein Reg_prop PF07494.6 gi|219851969|ref|YP_002466401.1| - 2.3e-06 26.9 5.5 51 4.4 0.0 9.4 11 0 0 11 11 9 0 Two component regulator propeller Ldl_recept_b PF00058.12 gi|219851969|ref|YP_002466401.1| - 3.2e-06 27.3 0.1 79 3.6 0.0 9.0 10 0 0 10 10 10 0 Low-density lipoprotein receptor repeat class B EF-hand_1 PF00036.27 gi|219851969|ref|YP_002466401.1| - 0.027 13.7 9.0 0.042 13.1 0.1 3.8 4 0 0 4 4 4 0 EF hand PQQ_3 PF13570.1 gi|219851969|ref|YP_002466401.1| - 0.076 13.3 34.3 4.2 7.7 0.1 10.8 12 1 0 12 12 12 0 PQQ-like domain EF-hand_6 PF13405.1 gi|219851969|ref|YP_002466401.1| - 0.13 12.1 1.8 0.45 10.5 0.1 2.9 2 0 0 2 2 2 0 EF-hand domain Big_3_2 PF12245.3 gi|219851969|ref|YP_002466401.1| - 1.9 8.1 13.2 29 4.3 0.1 5.6 6 0 0 6 6 6 0 Bacterial Ig-like domain (group 3) EF-hand_5 PF13202.1 gi|219851969|ref|YP_002466401.1| - 2.2 7.7 8.1 0.61 9.5 0.2 4.0 4 0 0 4 4 4 0 EF hand EF-hand_8 PF13833.1 gi|219851969|ref|YP_002466401.1| - 2.8 7.6 4.5 0.83 9.3 0.2 2.3 2 0 0 2 2 2 0 EF-hand domain pair DUF159 PF02586.9 gi|219851970|ref|YP_002466402.1| - 0.00035 20.1 0.1 0.00053 19.5 0.0 1.6 2 1 0 2 2 2 1 Uncharacterised ACR, COG2135 DUF217 PF02697.9 gi|219851972|ref|YP_002466404.1| - 0.058 13.6 0.0 0.092 12.9 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 Tir_receptor_M PF03549.9 gi|219851973|ref|YP_002466405.1| - 0.055 13.5 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) intimin-binding domain Fic PF02661.13 gi|219851974|ref|YP_002466406.1| - 1.5e-21 76.8 0.3 6e-21 74.9 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family HTH_11 PF08279.7 gi|219851974|ref|YP_002466406.1| - 0.0019 17.8 0.1 0.0075 15.8 0.0 2.1 3 0 0 3 3 3 1 HTH domain HTH_DeoR PF08220.7 gi|219851974|ref|YP_002466406.1| - 0.0064 15.9 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|219851974|ref|YP_002466406.1| - 0.035 13.8 0.0 0.11 12.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|219851974|ref|YP_002466406.1| - 0.06 13.5 0.1 0.37 10.9 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein MarR_2 PF12802.2 gi|219851974|ref|YP_002466406.1| - 0.098 12.3 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 MarR family OpuAC PF04069.7 gi|219851975|ref|YP_002466407.1| - 9.7e-53 179.1 0.3 1.1e-52 178.9 0.2 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BBS2_Mid PF14783.1 gi|219851975|ref|YP_002466407.1| - 0.14 11.9 0.2 1.2 8.9 0.2 2.2 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, middle region ABC_tran PF00005.22 gi|219851976|ref|YP_002466408.1| - 1.7e-32 112.6 0.0 2.5e-32 112.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219851976|ref|YP_002466408.1| - 1e-09 38.7 0.1 4.3e-06 26.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|219851976|ref|YP_002466408.1| - 0.0002 21.0 0.6 0.013 15.2 0.0 3.3 3 1 1 4 4 4 1 Part of AAA domain AAA_16 PF13191.1 gi|219851976|ref|YP_002466408.1| - 0.0027 17.7 3.0 0.006 16.5 0.9 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|219851976|ref|YP_002466408.1| - 0.0085 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219851976|ref|YP_002466408.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|219851976|ref|YP_002466408.1| - 0.026 13.4 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|219851976|ref|YP_002466408.1| - 0.047 13.8 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|219851976|ref|YP_002466408.1| - 0.072 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|219851976|ref|YP_002466408.1| - 0.099 12.6 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|219851976|ref|YP_002466408.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.1 gi|219851976|ref|YP_002466408.1| - 0.14 12.4 0.0 0.6 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|219851976|ref|YP_002466408.1| - 0.27 12.0 2.1 0.74 10.6 1.4 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|219851977|ref|YP_002466409.1| - 1.3e-11 44.3 13.1 1.9e-11 43.8 9.1 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4064 PF13273.1 gi|219851977|ref|YP_002466409.1| - 0.083 13.0 0.2 0.083 13.0 0.1 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) BPD_transp_1 PF00528.17 gi|219851978|ref|YP_002466410.1| - 3.8e-16 59.1 20.5 3.8e-16 59.1 14.2 1.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MFS_1 PF07690.11 gi|219851979|ref|YP_002466411.1| - 8.8e-48 162.7 95.8 1.9e-35 122.2 37.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|219851979|ref|YP_002466411.1| - 1.3e-06 27.0 25.0 4.7e-05 21.9 1.4 2.6 2 1 1 3 3 3 2 MFS/sugar transport protein Beta-APP PF03494.8 gi|219851979|ref|YP_002466411.1| - 0.21 11.0 3.8 11 5.6 0.5 2.7 2 0 0 2 2 2 0 Beta-amyloid peptide (beta-APP) ATG22 PF11700.3 gi|219851979|ref|YP_002466411.1| - 0.29 9.5 27.8 0.047 12.1 6.9 3.1 2 1 0 2 2 2 0 Vacuole effluxer Atg22 like UPF0150 PF03681.10 gi|219851981|ref|YP_002466413.1| - 1.9e-05 24.2 0.0 2.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Fic PF02661.13 gi|219851985|ref|YP_002466417.1| - 1.3e-10 41.8 0.0 2.1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family DndB PF14072.1 gi|219851989|ref|YP_002466421.1| - 7.8e-120 400.1 0.3 8.9e-120 399.9 0.2 1.0 1 0 0 1 1 1 1 DNA-sulfur modification-associated PAPS_reduct PF01507.14 gi|219851990|ref|YP_002466422.1| - 9.9e-10 38.5 0.0 4.6e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family AAA_23 PF13476.1 gi|219851991|ref|YP_002466423.1| - 6e-22 78.9 5.4 6e-22 78.9 3.7 2.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|219851991|ref|YP_002466423.1| - 1.4e-09 37.5 0.0 5.9e-09 35.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|219851991|ref|YP_002466423.1| - 6.5e-06 26.3 10.5 0.00027 21.0 0.1 3.1 1 1 1 2 2 2 1 AAA domain Tropomyosin_1 PF12718.2 gi|219851991|ref|YP_002466423.1| - 0.00021 21.1 16.7 0.014 15.2 3.3 2.8 2 0 0 2 2 2 2 Tropomyosin like AAA_29 PF13555.1 gi|219851991|ref|YP_002466423.1| - 0.00031 20.2 0.0 0.00063 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Seryl_tRNA_N PF02403.17 gi|219851991|ref|YP_002466423.1| - 0.00056 19.8 2.5 0.00056 19.8 1.7 3.8 3 2 1 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Zeta_toxin PF06414.7 gi|219851991|ref|YP_002466423.1| - 0.0029 16.7 0.0 0.0082 15.2 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin Syntaxin-6_N PF09177.6 gi|219851991|ref|YP_002466423.1| - 0.0032 17.8 11.9 0.43 11.0 0.8 3.5 2 1 1 3 3 3 2 Syntaxin 6, N-terminal ABC_tran PF00005.22 gi|219851991|ref|YP_002466423.1| - 0.013 15.8 0.0 0.013 15.8 0.0 3.3 2 1 0 2 2 1 0 ABC transporter APG6 PF04111.7 gi|219851991|ref|YP_002466423.1| - 0.013 14.6 16.6 0.079 11.9 4.4 2.4 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF948 PF06103.6 gi|219851991|ref|YP_002466423.1| - 0.035 13.9 0.4 0.035 13.9 0.3 3.2 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) Cep57_CLD PF14073.1 gi|219851991|ref|YP_002466423.1| - 0.079 12.7 13.5 0.017 14.9 2.5 2.6 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 NACHT PF05729.7 gi|219851991|ref|YP_002466423.1| - 0.089 12.4 1.5 0.98 9.0 0.0 3.0 3 0 0 3 3 3 0 NACHT domain DUF4168 PF13767.1 gi|219851991|ref|YP_002466423.1| - 0.092 13.3 0.4 0.092 13.3 0.3 2.8 3 1 1 4 4 2 0 Domain of unknown function (DUF4168) DUF342 PF03961.8 gi|219851991|ref|YP_002466423.1| - 0.21 9.9 16.1 0.98 7.7 4.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF342) DASH_Hsk3 PF08227.6 gi|219851991|ref|YP_002466423.1| - 0.22 11.7 1.7 3.6 7.8 0.0 3.3 3 0 0 3 3 3 0 DASH complex subunit Hsk3 like TMPIT PF07851.8 gi|219851991|ref|YP_002466423.1| - 0.25 10.3 10.7 0.061 12.3 0.4 2.5 2 1 1 3 3 3 0 TMPIT-like protein DUF4407 PF14362.1 gi|219851991|ref|YP_002466423.1| - 1.3 7.9 5.8 0.35 9.7 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) NPV_P10 PF05531.7 gi|219851991|ref|YP_002466423.1| - 2 8.7 15.7 1.5e+02 2.6 0.8 5.0 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|219851991|ref|YP_002466423.1| - 3.2 6.8 5.8 4 6.5 0.3 2.7 3 0 0 3 3 3 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|219851991|ref|YP_002466423.1| - 3.5 7.3 17.5 1.8 8.2 2.9 3.5 2 1 1 3 3 3 0 Laminin Domain II DUF724 PF05266.9 gi|219851991|ref|YP_002466423.1| - 8.5 5.9 16.5 3.9 7.0 2.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF1664 PF07889.7 gi|219851991|ref|YP_002466423.1| - 9.2 6.0 12.6 20 5.0 0.8 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1832 PF08870.6 gi|219851992|ref|YP_002466424.1| - 9.6e-28 96.1 0.0 1.2e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1832) Aminotran_5 PF00266.14 gi|219851993|ref|YP_002466425.1| - 2.2e-89 299.8 0.3 2.5e-89 299.6 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219851993|ref|YP_002466425.1| - 1.5e-11 44.0 0.4 1.9e-11 43.6 0.3 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|219851993|ref|YP_002466425.1| - 1.1e-08 34.4 2.1 1.7e-08 33.9 1.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|219851993|ref|YP_002466425.1| - 0.00012 20.5 0.1 0.00015 20.1 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|219851993|ref|YP_002466425.1| - 0.01 14.3 0.2 0.014 13.8 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DUF262 PF03235.9 gi|219851994|ref|YP_002466426.1| - 3.9e-36 125.0 14.2 3.9e-36 125.0 9.8 3.4 1 1 1 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|219851994|ref|YP_002466426.1| - 5e-17 62.0 6.1 5e-17 62.0 4.3 2.8 2 0 0 2 2 2 2 Protein of unknown function (DUF1524) DUF1232 PF06803.7 gi|219851995|ref|YP_002466427.1| - 6.3e-07 28.7 0.1 1.6e-06 27.4 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1232) ResIII PF04851.10 gi|219851996|ref|YP_002466428.1| - 3.9e-16 59.4 0.0 1.7e-15 57.3 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|219851996|ref|YP_002466428.1| - 5.2e-13 48.6 0.1 1.9e-12 46.8 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|219851996|ref|YP_002466428.1| - 6.4e-10 38.7 0.0 1.5e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase PLDc_2 PF13091.1 gi|219851996|ref|YP_002466428.1| - 2e-06 27.5 0.9 2.2e-05 24.1 0.2 2.5 2 0 0 2 2 2 1 PLD-like domain SNF2_N PF00176.18 gi|219851996|ref|YP_002466428.1| - 3.7e-06 25.9 0.9 2.1e-05 23.4 0.1 2.1 1 1 0 2 2 2 1 SNF2 family N-terminal domain DUF1823 PF08853.6 gi|219851997|ref|YP_002466429.1| - 0.0087 15.7 0.1 0.0092 15.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1823) DUF2634 PF10934.3 gi|219851997|ref|YP_002466429.1| - 0.012 15.3 0.1 0.018 14.8 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2634) BEX PF04538.7 gi|219851997|ref|YP_002466429.1| - 0.038 14.2 0.7 0.038 14.2 0.5 1.1 1 0 0 1 1 1 0 Brain expressed X-linked like family AAA_23 PF13476.1 gi|219851998|ref|YP_002466430.1| - 3.8e-11 43.7 60.8 3.5e-05 24.2 40.7 4.0 1 1 1 2 2 1 1 AAA domain SMC_N PF02463.14 gi|219851998|ref|YP_002466430.1| - 1.5e-08 34.1 0.1 1.5e-08 34.1 0.1 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219851998|ref|YP_002466430.1| - 1.4e-06 27.7 0.1 4.7e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|219851998|ref|YP_002466430.1| - 0.0071 16.6 0.0 0.0071 16.6 0.0 4.2 3 2 1 4 4 4 1 ABC transporter DUF258 PF03193.11 gi|219851998|ref|YP_002466430.1| - 0.0081 15.3 0.1 0.041 13.0 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|219851998|ref|YP_002466430.1| - 0.012 14.0 56.5 0.49 8.7 0.3 4.0 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|219851998|ref|YP_002466430.1| - 0.039 13.9 9.5 0.044 13.7 0.0 4.1 3 1 0 4 4 4 0 50S ribosome-binding GTPase AAA_21 PF13304.1 gi|219851998|ref|YP_002466430.1| - 0.047 13.6 32.5 1.1 9.0 9.7 3.5 1 1 1 2 2 2 0 AAA domain Flagellin_C PF00700.16 gi|219851998|ref|YP_002466430.1| - 0.072 13.2 0.4 0.072 13.2 0.3 2.6 3 1 0 3 3 2 0 Bacterial flagellin C-terminal helical region FtsK_SpoIIIE PF01580.13 gi|219851998|ref|YP_002466430.1| - 0.16 11.4 1.8 1.6 8.1 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family Reo_sigmaC PF04582.7 gi|219851998|ref|YP_002466430.1| - 0.2 10.8 6.1 0.12 11.5 1.0 2.2 2 0 0 2 2 2 0 Reovirus sigma C capsid protein GTPase_Cys_C PF12631.2 gi|219851998|ref|YP_002466430.1| - 1.2 9.5 6.3 1.4 9.4 0.4 3.3 3 0 0 3 3 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Spc7 PF08317.6 gi|219851998|ref|YP_002466430.1| - 4.2 5.9 42.2 0.6 8.7 9.9 3.2 3 1 0 3 3 3 0 Spc7 kinetochore protein Flavin_Reduct PF01613.13 gi|219852000|ref|YP_002466432.1| - 0.00021 21.1 0.0 0.00027 20.8 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain EF_assoc_2 PF08356.7 gi|219852000|ref|YP_002466432.1| - 0.096 12.4 0.1 0.24 11.1 0.1 1.6 1 0 0 1 1 1 0 EF hand associated FMN_red PF03358.10 gi|219852002|ref|YP_002466434.1| - 1.9e-19 69.6 0.0 2.5e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852002|ref|YP_002466434.1| - 7.6e-11 41.8 0.0 9.2e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|219852002|ref|YP_002466434.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain TPR_12 PF13424.1 gi|219852003|ref|YP_002466435.1| - 0.021 14.7 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_22 PF13401.1 gi|219852004|ref|YP_002466436.1| - 0.0013 18.9 0.0 0.015 15.4 0.0 2.6 3 1 0 3 3 3 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|219852004|ref|YP_002466436.1| - 0.096 12.1 0.1 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family UPF0102 PF02021.12 gi|219852005|ref|YP_002466437.1| - 0.023 14.6 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Beta_helix PF13229.1 gi|219852007|ref|YP_002466439.1| - 0.0001 22.1 0.0 0.00024 20.8 0.0 1.7 1 0 0 1 1 1 1 Right handed beta helix region tRNA_anti-like PF12869.2 gi|219852008|ref|YP_002466440.1| - 3.7e-05 23.2 0.4 6.9e-05 22.3 0.3 1.5 1 1 0 1 1 1 1 tRNA_anti-like DUF1206 PF06724.6 gi|219852008|ref|YP_002466440.1| - 0.0076 15.9 0.6 0.011 15.4 0.4 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1206) DsbC_N PF10411.4 gi|219852008|ref|YP_002466440.1| - 0.15 11.3 0.8 0.49 9.6 0.2 2.2 2 1 0 2 2 2 0 Disulfide bond isomerase protein N-terminus Claudin_2 PF13903.1 gi|219852009|ref|YP_002466441.1| - 3.3e-05 23.6 1.7 0.00038 20.2 0.1 2.1 2 0 0 2 2 2 1 PMP-22/EMP/MP20/Claudin tight junction DUF1385 PF07136.6 gi|219852009|ref|YP_002466441.1| - 0.034 13.2 1.6 0.051 12.6 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DUF4131 PF13567.1 gi|219852009|ref|YP_002466441.1| - 0.04 13.3 3.5 2.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2721 PF11026.3 gi|219852009|ref|YP_002466441.1| - 0.25 10.9 0.1 0.25 10.9 0.1 2.5 2 1 0 3 3 3 0 Protein of unknown function (DUF2721) Permease PF02405.11 gi|219852009|ref|YP_002466441.1| - 0.26 10.7 4.0 6.9 6.1 0.8 2.5 1 1 0 2 2 2 0 Permease DUF4231 PF14015.1 gi|219852009|ref|YP_002466441.1| - 0.37 10.7 2.9 27 4.7 2.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) zf-DHHC PF01529.15 gi|219852009|ref|YP_002466441.1| - 0.79 9.0 8.2 3.1 7.1 5.7 1.8 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF4064 PF13273.1 gi|219852009|ref|YP_002466441.1| - 4 7.5 16.2 3.5 7.7 3.0 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) NHL PF01436.16 gi|219852010|ref|YP_002466442.1| - 3.4e-59 193.9 5.5 7.3e-09 35.1 0.0 6.8 6 0 0 6 6 6 6 NHL repeat NosD PF05048.8 gi|219852010|ref|YP_002466442.1| - 5.8e-39 133.6 23.9 5.8e-39 133.6 16.5 3.0 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) SGL PF08450.7 gi|219852010|ref|YP_002466442.1| - 1.9e-23 83.1 8.6 0.00068 19.0 0.1 6.2 1 1 5 6 6 6 6 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852010|ref|YP_002466442.1| - 6.3e-16 57.8 26.8 0.0072 16.0 0.1 7.8 7 0 0 7 7 7 5 Beta-propeller repeat Beta_helix PF13229.1 gi|219852010|ref|YP_002466442.1| - 7.9e-11 41.9 26.5 7.9e-11 41.9 18.3 5.6 2 2 1 3 3 3 2 Right handed beta helix region SdiA-regulated PF06977.6 gi|219852010|ref|YP_002466442.1| - 0.0049 15.8 0.0 20 4.0 0.0 4.0 3 2 1 4 4 4 0 SdiA-regulated Ldl_recept_b PF00058.12 gi|219852010|ref|YP_002466442.1| - 0.011 16.0 0.0 14 6.0 0.0 4.6 4 0 0 4 4 4 0 Low-density lipoprotein receptor repeat class B EF-hand_1 PF00036.27 gi|219852010|ref|YP_002466442.1| - 0.11 11.8 0.1 0.11 11.8 0.1 4.0 5 0 0 5 5 5 0 EF hand EF-hand_6 PF13405.1 gi|219852010|ref|YP_002466442.1| - 0.56 10.2 7.5 0.68 9.9 0.1 3.8 4 0 0 4 4 4 0 EF-hand domain EF-hand_8 PF13833.1 gi|219852010|ref|YP_002466442.1| - 1.7 8.3 3.6 2.2 7.9 0.1 2.4 2 0 0 2 2 2 0 EF-hand domain pair zf-ribbon_3 PF13248.1 gi|219852011|ref|YP_002466443.1| - 8.4e-06 24.8 0.7 1.3e-05 24.2 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219852011|ref|YP_002466443.1| - 6e-05 22.3 1.1 9.2e-05 21.8 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219852011|ref|YP_002466443.1| - 0.00014 21.6 0.3 0.00018 21.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1183 PF06682.7 gi|219852011|ref|YP_002466443.1| - 0.0013 18.4 0.0 0.027 14.0 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1183) TF_Zn_Ribbon PF08271.7 gi|219852011|ref|YP_002466443.1| - 0.012 14.9 1.5 0.015 14.6 0.4 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|219852011|ref|YP_002466443.1| - 0.039 13.4 1.3 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.1 gi|219852011|ref|YP_002466443.1| - 0.049 12.9 1.7 1.5 8.2 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-IS66 PF13005.2 gi|219852011|ref|YP_002466443.1| - 0.15 12.0 1.6 11 6.0 0.3 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 YhfH PF14149.1 gi|219852011|ref|YP_002466443.1| - 0.19 11.5 0.8 6.2 6.6 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.6 gi|219852011|ref|YP_002466443.1| - 0.37 10.3 2.9 5.2 6.6 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|219852011|ref|YP_002466443.1| - 0.37 10.0 2.0 6.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|219852011|ref|YP_002466443.1| - 0.54 10.2 3.7 79 3.3 2.5 2.4 1 1 0 1 1 1 0 Zinc ribbon domain Cys_rich_KTR PF14205.1 gi|219852011|ref|YP_002466443.1| - 0.63 9.5 3.7 0.43 10.0 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|219852011|ref|YP_002466443.1| - 1 9.1 6.5 5.9 6.6 4.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|219852011|ref|YP_002466443.1| - 1.7 8.8 7.6 4.2 7.5 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin PF00301.15 gi|219852011|ref|YP_002466443.1| - 6.1 6.7 6.0 17 5.3 0.5 2.4 1 1 1 2 2 2 0 Rubredoxin DUF3753 PF12575.3 gi|219852011|ref|YP_002466443.1| - 7.1 6.5 12.0 13 5.6 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3753) zf-ribbon_3 PF13248.1 gi|219852012|ref|YP_002466444.1| - 0.00036 19.6 1.1 0.00055 19.0 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219852012|ref|YP_002466444.1| - 0.00047 19.5 0.6 0.0007 19.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219852012|ref|YP_002466444.1| - 0.00062 19.5 0.3 0.00092 18.9 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|219852012|ref|YP_002466444.1| - 0.25 10.6 0.7 0.5 9.7 0.5 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Halogen_Hydrol PF10112.4 gi|219852012|ref|YP_002466444.1| - 0.36 10.2 3.0 0.6 9.4 2.1 1.4 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein UPF0547 PF10571.4 gi|219852012|ref|YP_002466444.1| - 1.8 8.3 4.5 2.2 8.0 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4131 PF13567.1 gi|219852012|ref|YP_002466444.1| - 1.9 7.8 11.6 0.096 12.0 2.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) TraL PF07178.6 gi|219852012|ref|YP_002466444.1| - 6.3 6.8 6.9 0.39 10.7 0.9 1.9 2 0 0 2 2 2 0 TraL protein ABC2_membrane_3 PF12698.2 gi|219852012|ref|YP_002466444.1| - 9.8 5.0 10.9 18 4.2 7.5 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein Radical_SAM PF04055.16 gi|219852013|ref|YP_002466445.1| - 1.2e-19 71.1 0.0 2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219852013|ref|YP_002466445.1| - 3.1e-11 43.5 0.2 4.8e-10 39.7 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219852013|ref|YP_002466445.1| - 6.7e-11 42.2 0.1 3.1e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3463 PF11946.3 gi|219852013|ref|YP_002466445.1| - 1.6e-08 34.2 0.1 3.4e-08 33.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) BESS PF02944.15 gi|219852013|ref|YP_002466445.1| - 0.1 12.1 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 BESS motif fn3 PF00041.16 gi|219852015|ref|YP_002466447.1| - 4.2e-08 33.2 5.9 0.0016 18.5 0.3 3.0 2 0 0 2 2 2 2 Fibronectin type III domain Cu-oxidase_2 PF07731.9 gi|219852015|ref|YP_002466447.1| - 1.9e-07 30.6 7.8 0.0014 18.1 0.2 3.1 3 0 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|219852015|ref|YP_002466447.1| - 0.00027 20.6 3.2 1.5 8.5 0.0 3.9 2 1 1 3 3 3 2 Multicopper oxidase NHL PF01436.16 gi|219852016|ref|YP_002466448.1| - 6.3e-47 155.2 14.1 2.9e-09 36.4 0.1 6.6 6 0 0 6 6 6 6 NHL repeat SGL PF08450.7 gi|219852016|ref|YP_002466448.1| - 1.2e-12 47.7 4.4 0.014 14.8 0.0 5.5 2 1 2 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852016|ref|YP_002466448.1| - 7.7e-09 35.1 20.4 0.0047 16.6 0.0 6.6 6 1 0 6 6 6 3 Beta-propeller repeat EF-hand_1 PF00036.27 gi|219852016|ref|YP_002466448.1| - 0.0018 17.4 6.1 0.023 14.0 0.0 4.2 5 0 0 5 5 5 1 EF hand Cytotoxic PF09000.5 gi|219852016|ref|YP_002466448.1| - 0.02 14.9 0.0 8.3 6.5 0.0 3.3 1 1 1 3 3 3 0 Cytotoxic Crystall_2 PF09076.5 gi|219852016|ref|YP_002466448.1| - 0.034 13.8 8.9 6.7 6.5 0.4 3.9 3 0 0 3 3 3 0 Beta/Gamma crystallin EF-hand_6 PF13405.1 gi|219852016|ref|YP_002466448.1| - 0.04 13.8 2.7 0.22 11.4 0.0 3.2 2 1 1 3 3 3 0 EF-hand domain EF-hand_5 PF13202.1 gi|219852016|ref|YP_002466448.1| - 0.58 9.6 8.2 0.55 9.6 0.2 3.5 3 0 0 3 3 3 0 EF hand Methyltransf_11 PF08241.7 gi|219852017|ref|YP_002466449.1| - 2.3e-21 76.1 0.0 3.2e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852017|ref|YP_002466449.1| - 1.4e-19 70.1 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852017|ref|YP_002466449.1| - 1.6e-18 67.2 0.0 2.2e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852017|ref|YP_002466449.1| - 4.4e-18 65.5 0.0 6.8e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852017|ref|YP_002466449.1| - 4.1e-17 62.0 0.0 4.8e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|219852017|ref|YP_002466449.1| - 2.2e-14 53.6 0.0 3.1e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852017|ref|YP_002466449.1| - 1.4e-13 51.0 0.0 1.9e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852017|ref|YP_002466449.1| - 4.3e-11 42.8 0.0 6.5e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219852017|ref|YP_002466449.1| - 4.3e-09 36.2 0.0 5.6e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|219852017|ref|YP_002466449.1| - 1.5e-07 30.7 0.0 1.7e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|219852017|ref|YP_002466449.1| - 1.4e-06 27.5 0.0 1.9e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|219852017|ref|YP_002466449.1| - 4.5e-06 26.7 0.0 9.7e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase GCD14 PF08704.5 gi|219852017|ref|YP_002466449.1| - 9.7e-06 25.2 0.0 1.1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_9 PF08003.6 gi|219852017|ref|YP_002466449.1| - 1.4e-05 24.0 0.0 1.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_3 PF01596.12 gi|219852017|ref|YP_002466449.1| - 1.9e-05 23.8 0.0 2.4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|219852017|ref|YP_002466449.1| - 3.1e-05 23.4 0.0 5.1e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|219852017|ref|YP_002466449.1| - 0.0041 16.2 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|219852017|ref|YP_002466449.1| - 0.011 16.5 0.0 0.016 16.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|219852017|ref|YP_002466449.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|219852017|ref|YP_002466449.1| - 0.028 13.7 0.0 0.038 13.3 0.0 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Met_10 PF02475.11 gi|219852017|ref|YP_002466449.1| - 0.036 13.6 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein FmrO PF07091.6 gi|219852017|ref|YP_002466449.1| - 0.046 12.7 0.0 0.057 12.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Nol1_Nop2_Fmu PF01189.12 gi|219852017|ref|YP_002466449.1| - 0.051 12.9 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_8 PF05148.10 gi|219852017|ref|YP_002466449.1| - 0.071 12.7 0.0 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_4 PF02390.12 gi|219852017|ref|YP_002466449.1| - 0.13 11.3 0.0 3.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Putative methyltransferase PAS_4 PF08448.5 gi|219852019|ref|YP_002466451.1| - 1.6e-22 79.6 0.0 1.2e-07 31.7 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|219852019|ref|YP_002466451.1| - 6.5e-18 65.0 0.0 2e-05 24.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.1 gi|219852019|ref|YP_002466451.1| - 1.7e-16 59.4 1.0 1.6e-05 24.5 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219852019|ref|YP_002466451.1| - 7.1e-10 38.6 0.0 0.00049 19.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|219852019|ref|YP_002466451.1| - 6.6e-07 29.3 1.3 0.03 14.3 0.1 4.6 3 2 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|219852019|ref|YP_002466451.1| - 9.3e-07 29.0 0.0 0.036 14.3 0.0 3.2 3 0 0 3 3 3 2 PAS domain TrmB PF01978.14 gi|219852019|ref|YP_002466451.1| - 1.9e-05 24.2 0.0 9.8e-05 21.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219852019|ref|YP_002466451.1| - 0.00091 18.7 0.1 0.0019 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|219852019|ref|YP_002466451.1| - 0.019 14.7 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|219852019|ref|YP_002466451.1| - 0.14 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain ADH_zinc_N PF00107.21 gi|219852020|ref|YP_002466452.1| - 1e-24 86.5 1.0 1.9e-24 85.6 0.7 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|219852020|ref|YP_002466452.1| - 6.3e-19 67.7 0.0 2.5e-18 65.8 0.0 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|219852020|ref|YP_002466452.1| - 0.00018 22.4 0.2 0.00051 20.9 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase PrpR_N PF06506.6 gi|219852020|ref|YP_002466452.1| - 0.073 12.4 0.1 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator F420_oxidored PF03807.12 gi|219852021|ref|YP_002466453.1| - 3.1e-15 56.3 1.3 4.9e-15 55.7 0.9 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|219852021|ref|YP_002466453.1| - 4.3e-06 26.8 0.8 5.2e-06 26.5 0.6 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|219852021|ref|YP_002466453.1| - 0.00017 21.5 1.0 0.00024 21.0 0.7 1.3 1 0 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.7 gi|219852021|ref|YP_002466453.1| - 0.00026 20.3 0.8 0.0004 19.7 0.5 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|219852021|ref|YP_002466453.1| - 0.002 18.0 0.3 0.0031 17.3 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|219852021|ref|YP_002466453.1| - 0.003 17.3 0.2 0.004 16.8 0.2 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|219852021|ref|YP_002466453.1| - 0.0048 16.5 1.4 0.0069 16.0 1.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|219852021|ref|YP_002466453.1| - 0.0084 15.5 0.6 0.015 14.7 0.4 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|219852021|ref|YP_002466453.1| - 0.012 15.7 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|219852021|ref|YP_002466453.1| - 0.017 14.4 0.7 0.025 13.8 0.5 1.3 1 0 0 1 1 1 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|219852021|ref|YP_002466453.1| - 0.022 13.8 0.2 0.035 13.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|219852021|ref|YP_002466453.1| - 0.066 12.1 0.8 0.085 11.8 0.6 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|219852021|ref|YP_002466453.1| - 0.3 11.3 2.1 0.79 10.0 0.9 2.0 1 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|219852023|ref|YP_002466455.1| - 4.5e-35 121.0 0.8 1.1e-34 119.7 0.9 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|219852023|ref|YP_002466455.1| - 2.7e-30 105.9 0.1 3.1e-30 105.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|219852023|ref|YP_002466455.1| - 3.8e-15 56.0 0.7 5.4e-15 55.5 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|219852023|ref|YP_002466455.1| - 0.022 14.2 0.4 0.059 12.7 0.3 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Adenine_deam_C PF13382.1 gi|219852023|ref|YP_002466455.1| - 0.031 13.4 0.9 0.031 13.4 0.6 1.7 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain DUF2892 PF11127.3 gi|219852025|ref|YP_002466457.1| - 7.3 6.5 13.2 5.3 6.9 7.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) NfeD PF01957.13 gi|219852025|ref|YP_002466457.1| - 8.3 6.5 8.4 24 5.0 5.8 1.7 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding HTH_23 PF13384.1 gi|219852026|ref|YP_002466458.1| - 1.7e-05 24.3 0.1 5.1e-05 22.7 0.1 1.8 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|219852026|ref|YP_002466458.1| - 2.9e-05 23.9 0.1 9.7e-05 22.2 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|219852026|ref|YP_002466458.1| - 0.00018 21.0 0.3 0.0003 20.2 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|219852026|ref|YP_002466458.1| - 0.00025 21.1 0.0 0.00042 20.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.7 gi|219852026|ref|YP_002466458.1| - 0.00036 20.1 0.1 0.00059 19.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|219852026|ref|YP_002466458.1| - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|219852026|ref|YP_002466458.1| - 0.0028 17.5 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|219852026|ref|YP_002466458.1| - 0.0029 16.7 0.1 0.013 14.7 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_45 PF14947.1 gi|219852026|ref|YP_002466458.1| - 0.003 17.3 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_7 PF02796.10 gi|219852026|ref|YP_002466458.1| - 0.01 15.6 0.3 0.02 14.7 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_IclR PF09339.5 gi|219852026|ref|YP_002466458.1| - 0.01 15.3 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|219852026|ref|YP_002466458.1| - 0.01 15.4 0.0 0.017 14.7 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|219852026|ref|YP_002466458.1| - 0.013 15.1 0.1 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|219852026|ref|YP_002466458.1| - 0.021 14.2 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.6 gi|219852026|ref|YP_002466458.1| - 0.024 14.2 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_30 PF13556.1 gi|219852026|ref|YP_002466458.1| - 0.033 13.7 0.0 0.062 12.8 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain NUMOD1 PF07453.8 gi|219852026|ref|YP_002466458.1| - 0.038 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain Sigma70_r4_2 PF08281.7 gi|219852026|ref|YP_002466458.1| - 0.039 13.4 0.0 0.08 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|219852026|ref|YP_002466458.1| - 0.043 14.0 0.0 0.4 10.9 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|219852026|ref|YP_002466458.1| - 0.063 13.1 0.0 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family GerE PF00196.14 gi|219852026|ref|YP_002466458.1| - 0.063 12.5 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-FPG_IleRS PF06827.9 gi|219852026|ref|YP_002466458.1| - 0.077 12.6 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS TetR_N PF00440.18 gi|219852026|ref|YP_002466458.1| - 0.091 12.4 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Phage_antitermQ PF06530.7 gi|219852026|ref|YP_002466458.1| - 0.11 12.0 0.1 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_36 PF13730.1 gi|219852026|ref|YP_002466458.1| - 0.14 12.2 0.1 0.57 10.3 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain AHSA1 PF08327.6 gi|219852027|ref|YP_002466459.1| - 7.6e-11 42.1 0.0 1.1e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|219852027|ref|YP_002466459.1| - 0.0012 18.9 0.1 0.0018 18.4 0.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Abhydrolase_6 PF12697.2 gi|219852028|ref|YP_002466460.1| - 3.2e-24 86.0 3.4 4.3e-24 85.6 2.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219852028|ref|YP_002466460.1| - 1.1e-10 41.3 2.3 6e-10 39.0 1.6 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|219852028|ref|YP_002466460.1| - 7.7e-07 28.9 0.0 1.5e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF2974 PF11187.3 gi|219852028|ref|YP_002466460.1| - 0.025 13.9 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.3 gi|219852028|ref|YP_002466460.1| - 0.037 13.8 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Lipase_3 PF01764.20 gi|219852028|ref|YP_002466460.1| - 0.07 12.7 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) RibD_C PF01872.12 gi|219852029|ref|YP_002466461.1| - 7e-24 84.5 0.0 1.2e-23 83.8 0.0 1.3 1 1 0 1 1 1 1 RibD C-terminal domain CTNNB1_binding PF08347.6 gi|219852029|ref|YP_002466461.1| - 0.039 14.2 0.1 0.053 13.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal CTNNB1 binding PAS_4 PF08448.5 gi|219852032|ref|YP_002466464.1| - 2.8e-20 72.4 0.1 7.4e-08 32.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|219852032|ref|YP_002466464.1| - 4.4e-19 68.7 0.0 0.00035 20.8 0.0 4.2 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.1 gi|219852032|ref|YP_002466464.1| - 2.3e-15 55.8 1.2 0.0013 18.5 0.0 4.3 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|219852032|ref|YP_002466464.1| - 1.3e-11 44.2 0.0 0.0024 17.6 0.0 3.7 4 0 0 4 4 4 3 PAS fold PAS_7 PF12860.2 gi|219852032|ref|YP_002466464.1| - 7.2e-09 35.6 0.1 0.00045 20.2 0.0 4.0 3 2 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|219852032|ref|YP_002466464.1| - 0.00019 21.6 0.0 0.00073 19.7 0.0 2.1 3 0 0 3 3 3 1 PAS domain HTH_11 PF08279.7 gi|219852032|ref|YP_002466464.1| - 0.00035 20.1 0.3 0.0012 18.4 0.0 2.1 2 0 0 2 2 2 1 HTH domain PAS_3 PF08447.6 gi|219852032|ref|YP_002466464.1| - 0.00036 20.5 0.4 0.00091 19.2 0.3 1.7 1 0 0 1 1 1 1 PAS fold TrmB PF01978.14 gi|219852032|ref|YP_002466464.1| - 0.024 14.3 0.1 0.074 12.7 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|219852032|ref|YP_002466464.1| - 0.073 12.7 0.0 0.23 11.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DUF2784 PF10861.3 gi|219852032|ref|YP_002466464.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of Unknown function (DUF2784) F420_oxidored PF03807.12 gi|219852034|ref|YP_002466466.1| - 4e-17 62.4 0.7 6.1e-17 61.8 0.5 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|219852034|ref|YP_002466466.1| - 0.00017 21.6 0.7 0.00024 21.1 0.5 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|219852034|ref|YP_002466466.1| - 0.0011 18.8 0.1 0.0021 17.9 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|219852034|ref|YP_002466466.1| - 0.0027 17.0 0.1 0.0041 16.5 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|219852034|ref|YP_002466466.1| - 0.0027 16.8 0.2 0.0049 16.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|219852034|ref|YP_002466466.1| - 0.0038 17.1 0.8 0.0056 16.6 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.11 gi|219852034|ref|YP_002466466.1| - 0.0038 16.6 0.4 0.0071 15.7 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|219852034|ref|YP_002466466.1| - 0.0039 16.9 0.2 0.006 16.3 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|219852034|ref|YP_002466466.1| - 0.0062 16.2 0.6 0.01 15.5 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3090 PF11290.3 gi|219852034|ref|YP_002466466.1| - 0.026 13.9 0.4 0.085 12.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) adh_short_C2 PF13561.1 gi|219852034|ref|YP_002466466.1| - 0.042 13.6 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Saccharop_dh PF03435.13 gi|219852034|ref|YP_002466466.1| - 0.063 12.2 0.5 0.085 11.8 0.3 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|219852034|ref|YP_002466466.1| - 0.12 11.6 0.3 0.19 10.9 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family ADH_zinc_N PF00107.21 gi|219852035|ref|YP_002466467.1| - 8.5e-18 64.1 0.2 1.7e-17 63.1 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|219852035|ref|YP_002466467.1| - 1.4e-14 53.7 0.1 4.6e-14 52.1 0.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|219852035|ref|YP_002466467.1| - 0.00051 20.9 0.0 0.0012 19.7 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF108 PF01958.13 gi|219852036|ref|YP_002466468.1| - 1.4e-32 111.7 0.1 2.9e-32 110.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|219852036|ref|YP_002466468.1| - 1.2e-17 64.3 0.1 2.2e-17 63.5 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|219852036|ref|YP_002466468.1| - 0.0018 18.7 0.0 0.0039 17.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|219852036|ref|YP_002466468.1| - 0.0019 18.1 0.0 0.0039 17.0 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|219852036|ref|YP_002466468.1| - 0.024 13.8 0.0 0.043 12.9 0.0 1.4 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SelB-wing_2 PF09106.6 gi|219852037|ref|YP_002466469.1| - 0.1 12.5 0.1 0.81 9.6 0.0 2.1 2 0 0 2 2 2 0 Elongation factor SelB, winged helix ARL2_Bind_BART PF11527.3 gi|219852037|ref|YP_002466469.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART DUF502 PF04367.8 gi|219852037|ref|YP_002466469.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF502) Gene66 PF02053.10 gi|219852038|ref|YP_002466470.1| - 0.0024 17.3 0.1 0.0029 17.0 0.1 1.1 1 0 0 1 1 1 1 Gene 66 (IR5) protein Abhydrolase_6 PF12697.2 gi|219852039|ref|YP_002466471.1| - 8.1e-17 61.8 0.4 1e-16 61.4 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219852039|ref|YP_002466471.1| - 8.1e-08 32.1 0.0 1.4e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|219852039|ref|YP_002466471.1| - 0.02 14.1 0.0 0.15 11.3 0.0 2.2 3 0 0 3 3 3 0 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|219852039|ref|YP_002466471.1| - 0.04 13.1 0.0 0.42 9.8 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family PKD PF00801.15 gi|219852041|ref|YP_002466473.1| - 2.3e-77 254.6 99.6 1.5e-14 53.4 5.1 8.4 5 1 2 8 8 8 7 PKD domain NHL PF01436.16 gi|219852041|ref|YP_002466473.1| - 1e-46 154.5 21.8 2.7e-11 42.7 0.0 6.6 6 0 0 6 6 6 5 NHL repeat SGL PF08450.7 gi|219852041|ref|YP_002466473.1| - 9.4e-19 67.7 7.5 0.001 18.5 0.0 5.8 1 1 4 5 5 5 5 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852041|ref|YP_002466473.1| - 1.1e-12 47.5 36.4 0.008 15.9 0.0 8.0 8 0 0 8 8 8 6 Beta-propeller repeat DUF3324 PF11797.3 gi|219852041|ref|YP_002466473.1| - 0.00015 21.5 6.8 0.081 12.6 0.0 5.5 6 0 0 6 6 6 1 Protein of unknown function C-terminal (DUF3324) DUF4625 PF15418.1 gi|219852041|ref|YP_002466473.1| - 0.003 17.6 2.0 6 6.9 0.0 4.6 5 0 0 5 5 5 1 Domain of unknown function (DUF4625) SdiA-regulated PF06977.6 gi|219852041|ref|YP_002466473.1| - 0.014 14.3 0.3 32 3.3 0.0 4.3 3 1 1 4 4 4 0 SdiA-regulated Y_Y_Y PF07495.8 gi|219852041|ref|YP_002466473.1| - 0.29 10.9 19.6 0.51 10.1 0.4 6.0 7 0 0 7 7 7 0 Y_Y_Y domain LTD PF00932.14 gi|219852044|ref|YP_002466476.1| - 6.1e-09 35.9 0.0 6.9e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain COesterase PF00135.23 gi|219852045|ref|YP_002466477.1| - 4e-122 408.6 0.0 4.9e-122 408.3 0.0 1.0 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.8 gi|219852045|ref|YP_002466477.1| - 2.6e-05 23.8 1.1 0.00019 21.0 0.7 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|219852045|ref|YP_002466477.1| - 0.00026 20.7 0.7 0.0017 18.1 0.1 2.1 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|219852045|ref|YP_002466477.1| - 0.0003 20.0 0.1 0.0006 19.1 0.0 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Esterase PF00756.15 gi|219852045|ref|YP_002466477.1| - 0.006 16.0 0.2 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Putative esterase Transglycosylas PF06737.9 gi|219852045|ref|YP_002466477.1| - 0.059 13.6 0.3 0.71 10.2 0.0 2.4 2 0 0 2 2 2 0 Transglycosylase-like domain Radical_SAM PF04055.16 gi|219852046|ref|YP_002466478.1| - 4.9e-13 49.5 0.0 1.1e-12 48.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|219852046|ref|YP_002466478.1| - 0.041 13.7 0.0 0.1 12.4 0.0 1.8 1 1 0 1 1 1 0 B12 binding domain CMS1 PF14617.1 gi|219852046|ref|YP_002466478.1| - 0.16 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit PGK PF00162.14 gi|219852047|ref|YP_002466479.1| - 3.4e-143 476.8 0.0 3.9e-143 476.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PGM_PMM_I PF02878.11 gi|219852048|ref|YP_002466480.1| - 7e-33 113.0 0.0 1.7e-32 111.7 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|219852048|ref|YP_002466480.1| - 2.5e-21 75.8 0.0 4.6e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|219852048|ref|YP_002466480.1| - 8.2e-21 74.2 0.0 1.6e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|219852048|ref|YP_002466480.1| - 3.1e-10 39.8 0.0 7.3e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PPDK_N PF01326.14 gi|219852049|ref|YP_002466481.1| - 4.5e-90 302.0 0.0 7.7e-90 301.2 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|219852049|ref|YP_002466481.1| - 1.2e-58 198.3 0.0 1.9e-58 197.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|219852049|ref|YP_002466481.1| - 2.1e-24 84.8 0.2 7.3e-24 83.1 0.1 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Sulfate_transp PF00916.15 gi|219852050|ref|YP_002466482.1| - 4e-51 173.6 14.1 4e-51 173.6 9.8 1.8 2 0 0 2 2 2 1 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|219852050|ref|YP_002466482.1| - 6.4e-21 73.8 7.1 6.4e-21 73.8 4.9 4.7 5 1 1 6 6 6 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|219852050|ref|YP_002466482.1| - 9.2e-16 57.3 0.0 1.6e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 STAS domain HIT PF01230.18 gi|219852051|ref|YP_002466483.1| - 1.1e-22 80.4 0.0 1.2e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|219852051|ref|YP_002466483.1| - 6.4e-11 42.4 0.0 8e-11 42.1 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|219852051|ref|YP_002466483.1| - 0.00053 19.6 0.0 0.001 18.7 0.0 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF2284 PF10050.4 gi|219852052|ref|YP_002466484.1| - 2.7e-46 157.1 0.0 3.2e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Lactamase_B PF00753.22 gi|219852053|ref|YP_002466485.1| - 6.2e-09 35.7 0.1 1e-08 35.0 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219852053|ref|YP_002466485.1| - 8.4e-05 22.1 0.0 0.00042 19.9 0.0 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.11 gi|219852054|ref|YP_002466486.1| - 9.4e-42 142.9 45.4 9.4e-42 142.9 31.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219852054|ref|YP_002466486.1| - 1.8e-12 46.6 10.8 1.8e-12 46.6 7.5 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter Pentapeptide_3 PF13576.1 gi|219852055|ref|YP_002466487.1| - 7.6e-45 150.5 156.9 7.7e-11 41.7 10.1 7.8 2 1 8 10 10 10 9 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|219852055|ref|YP_002466487.1| - 5.6e-07 29.1 4.9 1e-06 28.3 3.4 1.4 1 0 0 1 1 1 1 Ion channel Pentapeptide_4 PF13599.1 gi|219852055|ref|YP_002466487.1| - 8e-07 28.7 50.8 0.0024 17.6 8.1 5.6 1 1 3 4 4 4 3 Pentapeptide repeats (9 copies) Ribosomal_S21 PF01165.15 gi|219852055|ref|YP_002466487.1| - 0.018 14.4 6.6 0.036 13.5 4.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S21 zf-C3Hc3H PF13891.1 gi|219852055|ref|YP_002466487.1| - 0.037 14.0 0.1 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Potential DNA-binding domain Acetyltransf_3 PF13302.1 gi|219852057|ref|YP_002466489.1| - 2.2e-16 60.2 0.0 2.7e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|219852057|ref|YP_002466489.1| - 8.4e-05 22.5 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|219852057|ref|YP_002466489.1| - 0.00031 20.7 0.0 0.00043 20.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|219852057|ref|YP_002466489.1| - 0.00042 20.2 0.0 0.00054 19.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|219852057|ref|YP_002466489.1| - 0.0061 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|219852057|ref|YP_002466489.1| - 0.022 14.8 0.0 0.79 9.9 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Kelch_4 PF13418.1 gi|219852059|ref|YP_002466491.1| - 3.9e-23 80.9 34.0 2.1e-06 27.4 0.6 7.1 7 0 0 7 7 7 6 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|219852059|ref|YP_002466491.1| - 2.6e-18 65.3 17.9 0.0042 17.2 0.1 6.6 4 2 2 6 6 6 5 Kelch motif Kelch_3 PF13415.1 gi|219852059|ref|YP_002466491.1| - 2.5e-17 62.5 35.1 5.6e-05 23.1 0.5 6.4 6 0 0 6 6 6 6 Galactose oxidase, central domain Kelch_5 PF13854.1 gi|219852059|ref|YP_002466491.1| - 1.1e-15 57.1 5.4 0.0013 18.6 0.0 6.3 6 0 0 6 6 6 5 Kelch motif BNR_2 PF13088.1 gi|219852059|ref|YP_002466491.1| - 6.3e-12 45.3 21.2 2.2e-06 27.1 2.6 3.1 1 1 0 2 2 2 2 BNR repeat-like domain Kelch_2 PF07646.10 gi|219852059|ref|YP_002466491.1| - 7.6e-12 44.4 16.8 0.0044 16.7 0.1 6.4 6 0 0 6 6 6 3 Kelch motif Glyoxal_oxid_N PF07250.6 gi|219852059|ref|YP_002466491.1| - 4.2e-11 42.3 12.7 0.0036 16.4 0.9 4.1 3 1 1 4 4 4 4 Glyoxal oxidase N-terminus BNR PF02012.15 gi|219852059|ref|YP_002466491.1| - 5.5e-10 37.5 36.8 0.034 13.9 1.3 6.3 5 0 0 5 5 5 5 BNR/Asp-box repeat PKD PF00801.15 gi|219852059|ref|YP_002466491.1| - 2.9e-08 33.3 11.4 0.0002 21.0 0.6 3.1 2 0 0 2 2 2 2 PKD domain Kelch_1 PF01344.20 gi|219852059|ref|YP_002466491.1| - 1.2e-07 31.1 14.0 0.039 13.4 0.0 6.2 6 1 0 6 6 6 4 Kelch motif DUF4185 PF13810.1 gi|219852059|ref|YP_002466491.1| - 0.00013 20.9 30.7 0.41 9.4 0.3 5.3 1 1 3 5 5 5 5 Domain of unknown function (DUF4185) EF-hand_1 PF00036.27 gi|219852059|ref|YP_002466491.1| - 0.00098 18.2 4.4 0.041 13.1 0.1 2.7 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.1 gi|219852059|ref|YP_002466491.1| - 0.0081 15.9 1.9 0.21 11.5 0.1 2.7 2 0 0 2 2 2 1 EF-hand domain EF-hand_8 PF13833.1 gi|219852059|ref|YP_002466491.1| - 0.02 14.4 0.2 0.02 14.4 0.2 2.0 2 0 0 2 2 2 0 EF-hand domain pair Cache_2 PF08269.6 gi|219852060|ref|YP_002466492.1| - 1.6e-07 31.2 0.1 2.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Cache domain DUF1942 PF09167.6 gi|219852060|ref|YP_002466492.1| - 0.078 12.7 0.0 0.3 10.8 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF1942) MFS_1 PF07690.11 gi|219852061|ref|YP_002466493.1| - 2.5e-52 177.7 60.3 1.8e-48 165.0 35.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|219852061|ref|YP_002466493.1| - 3.2e-17 61.8 25.6 4.2e-17 61.4 17.7 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector TRI12 PF06609.8 gi|219852061|ref|YP_002466493.1| - 1.5e-06 26.6 10.0 1.5e-06 26.6 7.0 2.2 1 1 1 3 3 3 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.1 gi|219852061|ref|YP_002466493.1| - 0.0013 17.1 44.4 0.025 12.9 7.7 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein MarR PF01047.17 gi|219852062|ref|YP_002466494.1| - 6.9e-13 48.0 0.0 1.1e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|219852062|ref|YP_002466494.1| - 8.8e-11 41.3 0.0 1.3e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219852062|ref|YP_002466494.1| - 1.9e-07 31.2 0.0 2.7e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|219852062|ref|YP_002466494.1| - 1.6e-05 25.2 0.0 2.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_34 PF13601.1 gi|219852062|ref|YP_002466494.1| - 3.9e-05 23.5 0.0 6.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|219852062|ref|YP_002466494.1| - 7.6e-05 22.0 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219852062|ref|YP_002466494.1| - 0.00029 20.4 0.0 0.00042 19.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219852062|ref|YP_002466494.1| - 0.0027 17.2 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|219852062|ref|YP_002466494.1| - 0.0028 17.4 0.0 0.0046 16.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|219852062|ref|YP_002466494.1| - 0.0053 16.5 0.1 0.009 15.8 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|219852062|ref|YP_002466494.1| - 0.0056 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.9 gi|219852062|ref|YP_002466494.1| - 0.033 13.9 0.2 0.083 12.6 0.1 1.6 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|219852062|ref|YP_002466494.1| - 0.034 13.9 0.0 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix RQC PF09382.5 gi|219852062|ref|YP_002466494.1| - 0.055 13.2 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 RQC domain HemN_C PF06969.11 gi|219852062|ref|YP_002466494.1| - 0.056 13.4 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.15 gi|219852062|ref|YP_002466494.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF1634 PF07843.6 gi|219852064|ref|YP_002466496.1| - 2.9 7.5 16.9 1.3 8.7 1.2 3.0 2 2 0 3 3 3 0 Protein of unknown function (DUF1634) ABA_GPCR PF12430.3 gi|219852064|ref|YP_002466496.1| - 5.7 6.0 13.6 0.061 12.4 4.2 1.5 2 0 0 2 2 2 0 Abscisic acid G-protein coupled receptor Bmp PF02608.9 gi|219852065|ref|YP_002466497.1| - 1.5e-42 145.3 0.2 1.9e-42 145.0 0.1 1.0 1 0 0 1 1 1 1 Basic membrane protein Methyltransf_4 PF02390.12 gi|219852065|ref|YP_002466497.1| - 0.0058 15.6 0.0 0.0091 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Class_IIIsignal PF04021.7 gi|219852065|ref|YP_002466497.1| - 3.1 7.6 8.2 8.5 6.2 5.7 1.8 1 0 0 1 1 1 0 Class III signal peptide Cache_2 PF08269.6 gi|219852066|ref|YP_002466498.1| - 9.6e-25 86.4 3.1 3.1e-09 36.7 0.0 3.6 3 1 0 3 3 3 3 Cache domain ROK PF00480.15 gi|219852067|ref|YP_002466499.1| - 1.5e-39 135.6 0.0 1.8e-39 135.3 0.0 1.1 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|219852067|ref|YP_002466499.1| - 0.042 13.1 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Hexokinase_1 PF00349.16 gi|219852067|ref|YP_002466499.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Hexokinase Glucokinase PF02685.11 gi|219852067|ref|YP_002466499.1| - 0.12 11.0 0.0 0.31 9.7 0.0 1.6 1 1 0 1 1 1 0 Glucokinase Peptidase_M13_N PF05649.8 gi|219852068|ref|YP_002466500.1| - 1.3e-102 343.8 0.0 1.6e-102 343.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.16 gi|219852068|ref|YP_002466500.1| - 1.6e-54 184.2 0.0 5.4e-54 182.4 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M13 Ish1 PF10281.4 gi|219852068|ref|YP_002466500.1| - 0.0018 18.3 0.3 0.035 14.1 0.0 2.6 2 0 0 2 2 2 1 Putative stress-responsive nuclear envelope protein Aldo_ket_red PF00248.16 gi|219852069|ref|YP_002466501.1| - 1.7e-47 161.6 0.0 2.3e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|219852069|ref|YP_002466501.1| - 5.5e-10 39.4 4.8 1.3e-09 38.1 3.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852069|ref|YP_002466501.1| - 1.7e-09 37.8 5.3 3.6e-09 36.7 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852069|ref|YP_002466501.1| - 1.6e-08 34.4 4.8 3.2e-08 33.4 3.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852069|ref|YP_002466501.1| - 3.5e-07 30.5 2.1 0.00068 20.0 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852069|ref|YP_002466501.1| - 2e-05 24.8 6.0 3.9e-05 23.9 3.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852069|ref|YP_002466501.1| - 4.4e-05 24.1 6.4 0.0049 17.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|219852069|ref|YP_002466501.1| - 0.00013 21.4 1.9 0.00013 21.4 1.3 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852069|ref|YP_002466501.1| - 0.00013 21.6 12.0 0.0018 18.0 8.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852069|ref|YP_002466501.1| - 0.0011 18.7 2.7 0.0011 18.7 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852069|ref|YP_002466501.1| - 0.007 16.2 7.5 0.19 11.5 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|219852069|ref|YP_002466501.1| - 0.019 14.5 4.5 0.059 13.0 0.2 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|219852069|ref|YP_002466501.1| - 0.019 14.8 2.9 0.019 14.8 2.0 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219852069|ref|YP_002466501.1| - 0.024 14.9 13.7 0.025 14.8 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852069|ref|YP_002466501.1| - 0.12 12.9 4.5 0.24 11.9 0.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219852069|ref|YP_002466501.1| - 1.9 9.2 14.2 0.45 11.2 3.2 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain TetR_N PF00440.18 gi|219852070|ref|YP_002466502.1| - 8.4e-15 54.1 0.1 1.5e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_5 PF08360.6 gi|219852070|ref|YP_002466502.1| - 0.029 14.3 0.0 0.061 13.2 0.0 1.6 1 1 0 1 1 1 0 QacR-like protein, C-terminal region ABC_tran PF00005.22 gi|219852071|ref|YP_002466503.1| - 9e-23 81.0 0.0 1.2e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852071|ref|YP_002466503.1| - 9.5e-11 42.1 1.3 4.2e-06 26.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219852071|ref|YP_002466503.1| - 1.3e-05 24.4 0.2 0.0014 17.7 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|219852071|ref|YP_002466503.1| - 0.0021 18.3 0.0 0.0036 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|219852071|ref|YP_002466503.1| - 0.0054 16.1 0.1 0.0069 15.8 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|219852071|ref|YP_002466503.1| - 0.011 15.1 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|219852071|ref|YP_002466503.1| - 0.016 14.0 0.5 0.023 13.4 0.3 1.2 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|219852071|ref|YP_002466503.1| - 0.047 13.5 0.0 0.08 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|219852071|ref|YP_002466503.1| - 0.062 12.4 0.0 0.093 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|219852071|ref|YP_002466503.1| - 0.064 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|219852071|ref|YP_002466503.1| - 0.081 12.8 0.2 3.8 7.4 0.0 2.4 1 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|219852071|ref|YP_002466503.1| - 0.1 12.8 0.3 0.24 11.5 0.1 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|219852071|ref|YP_002466503.1| - 0.1 12.1 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|219852071|ref|YP_002466503.1| - 0.16 11.5 0.1 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|219852071|ref|YP_002466503.1| - 0.16 11.3 0.3 0.28 10.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.14 gi|219852071|ref|YP_002466503.1| - 0.18 11.0 0.5 0.5 9.5 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|219852071|ref|YP_002466503.1| - 0.26 9.7 1.8 1.9 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|219852073|ref|YP_002466505.1| - 1.5e-35 122.2 24.9 1.5e-35 122.2 17.3 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219852073|ref|YP_002466505.1| - 3.6e-17 62.4 31.2 3.6e-17 62.4 21.6 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219852073|ref|YP_002466505.1| - 6e-07 28.8 29.2 7.4e-07 28.5 20.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219852073|ref|YP_002466505.1| - 0.021 13.7 24.7 0.081 11.7 17.1 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|219852074|ref|YP_002466506.1| - 8.9e-35 119.9 0.0 1.7e-34 119.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852074|ref|YP_002466506.1| - 3.3e-17 63.3 0.1 1.6e-14 54.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|219852074|ref|YP_002466506.1| - 2.1e-07 30.3 0.1 2.1e-05 23.7 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|219852074|ref|YP_002466506.1| - 3e-05 23.5 0.1 0.00028 20.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|219852074|ref|YP_002466506.1| - 5e-05 23.5 0.1 0.0004 20.5 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|219852074|ref|YP_002466506.1| - 0.00016 22.0 0.0 0.00025 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|219852074|ref|YP_002466506.1| - 0.00025 21.1 0.2 0.00098 19.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219852074|ref|YP_002466506.1| - 0.00077 18.9 0.3 0.002 17.6 0.1 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|219852074|ref|YP_002466506.1| - 0.00092 18.7 0.2 0.0017 17.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF4162 PF13732.1 gi|219852074|ref|YP_002466506.1| - 0.0017 18.7 0.0 0.0041 17.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|219852074|ref|YP_002466506.1| - 0.0019 17.4 0.0 0.021 14.0 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|219852074|ref|YP_002466506.1| - 0.01 15.8 0.0 0.025 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|219852074|ref|YP_002466506.1| - 0.03 13.1 0.1 0.05 12.3 0.1 1.3 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|219852074|ref|YP_002466506.1| - 0.048 13.3 0.0 0.17 11.5 0.0 2.0 2 1 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|219852074|ref|YP_002466506.1| - 0.058 13.2 0.0 0.67 9.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|219852074|ref|YP_002466506.1| - 0.091 12.3 0.0 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|219852074|ref|YP_002466506.1| - 0.11 13.3 0.1 0.21 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|219852074|ref|YP_002466506.1| - 0.11 12.9 0.0 0.45 11.0 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein IstB_IS21 PF01695.12 gi|219852074|ref|YP_002466506.1| - 0.11 11.8 0.0 5.9 6.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Methyltransf_18 PF12847.2 gi|219852075|ref|YP_002466507.1| - 4e-14 53.1 0.0 5.7e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852075|ref|YP_002466507.1| - 6e-13 49.1 0.0 8.8e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852075|ref|YP_002466507.1| - 1.3e-12 47.5 0.0 1.6e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852075|ref|YP_002466507.1| - 2.5e-11 43.8 0.0 4e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852075|ref|YP_002466507.1| - 6.3e-09 36.2 0.0 1e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219852075|ref|YP_002466507.1| - 1.6e-08 34.0 0.0 2.3e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|219852075|ref|YP_002466507.1| - 3.6e-07 30.2 0.1 7e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852075|ref|YP_002466507.1| - 4.4e-07 29.2 0.0 6.1e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.6 gi|219852075|ref|YP_002466507.1| - 4.5e-07 29.5 0.0 2.6e-06 27.0 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.1 gi|219852075|ref|YP_002466507.1| - 8.1e-07 28.8 0.0 1.1e-06 28.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|219852075|ref|YP_002466507.1| - 9.1e-05 21.9 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|219852075|ref|YP_002466507.1| - 0.00068 18.7 0.0 0.00089 18.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|219852075|ref|YP_002466507.1| - 0.0013 17.9 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PadR PF03551.9 gi|219852076|ref|YP_002466508.1| - 2.5e-17 62.4 0.3 5.4e-17 61.3 0.1 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|219852076|ref|YP_002466508.1| - 0.02 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|219852076|ref|YP_002466508.1| - 0.036 14.1 0.0 0.11 12.5 0.0 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain Tmemb_18A PF09771.4 gi|219852079|ref|YP_002466511.1| - 0.03 14.2 0.3 0.044 13.7 0.2 1.3 1 1 0 1 1 1 0 Transmembrane protein 188 Methyltransf_31 PF13847.1 gi|219852080|ref|YP_002466512.1| - 3.9e-16 59.0 0.0 4.7e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852080|ref|YP_002466512.1| - 5.1e-15 55.5 0.0 6.8e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852080|ref|YP_002466512.1| - 9.2e-14 51.7 0.0 1.3e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852080|ref|YP_002466512.1| - 1.8e-13 51.0 0.0 2.5e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852080|ref|YP_002466512.1| - 5.6e-13 49.1 0.0 1.1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852080|ref|YP_002466512.1| - 7.6e-12 44.8 0.0 8e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|219852080|ref|YP_002466512.1| - 1.6e-07 31.5 0.0 3e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|219852080|ref|YP_002466512.1| - 1.6e-05 24.0 0.0 2.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|219852080|ref|YP_002466512.1| - 3.2e-05 23.3 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|219852080|ref|YP_002466512.1| - 0.00049 20.1 0.0 0.00082 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|219852080|ref|YP_002466512.1| - 0.00051 19.6 0.0 0.00067 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.10 gi|219852080|ref|YP_002466512.1| - 0.00062 18.9 0.0 0.00081 18.5 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_PK PF05891.7 gi|219852080|ref|YP_002466512.1| - 0.0013 18.1 0.0 0.0016 17.7 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase PrmA PF06325.8 gi|219852080|ref|YP_002466512.1| - 0.0015 17.6 0.0 0.0026 16.9 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Rsm22 PF09243.5 gi|219852080|ref|YP_002466512.1| - 0.004 16.2 0.0 0.0048 15.9 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 DREV PF05219.7 gi|219852080|ref|YP_002466512.1| - 0.0048 15.8 0.0 0.02 13.7 0.0 1.8 2 0 0 2 2 2 1 DREV methyltransferase KaiC PF06745.8 gi|219852080|ref|YP_002466512.1| - 0.035 13.2 0.0 0.34 9.9 0.0 2.0 2 0 0 2 2 2 0 KaiC Metallophos PF00149.23 gi|219852081|ref|YP_002466513.1| - 3.9e-07 29.6 0.0 9.2e-07 28.4 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CBM_6 PF03422.10 gi|219852082|ref|YP_002466514.1| - 1.2e-19 70.6 3.2 6.1e-19 68.3 2.2 2.3 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) EF-hand_6 PF13405.1 gi|219852082|ref|YP_002466514.1| - 0.01 15.6 0.7 0.4 10.6 0.1 2.9 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|219852082|ref|YP_002466514.1| - 0.017 14.3 8.0 0.041 13.1 0.2 3.1 3 0 0 3 3 3 0 EF hand EF-hand_5 PF13202.1 gi|219852082|ref|YP_002466514.1| - 0.92 8.9 5.5 1.1 8.7 0.3 3.1 2 0 0 2 2 2 0 EF hand FG-GAP PF01839.18 gi|219852082|ref|YP_002466514.1| - 3.5 7.4 9.1 9.3 6.0 0.1 4.1 2 1 1 3 3 3 0 FG-GAP repeat Response_reg PF00072.19 gi|219852083|ref|YP_002466515.1| - 1.5e-20 73.2 0.0 2.2e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GIT_SHD PF08518.6 gi|219852083|ref|YP_002466515.1| - 0.074 12.4 0.2 7.7 5.9 0.0 2.9 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT DUF2178 PF09946.4 gi|219852084|ref|YP_002466516.1| - 3.8e-10 39.4 0.1 4.8e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) Na_H_antiporter PF03553.9 gi|219852084|ref|YP_002466516.1| - 0.05 12.6 0.2 0.072 12.1 0.1 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter family HTH_3 PF01381.17 gi|219852085|ref|YP_002466517.1| - 5.6e-12 45.3 0.0 6.1e-12 45.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|219852085|ref|YP_002466517.1| - 8e-12 45.0 0.0 8.9e-12 44.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|219852085|ref|YP_002466517.1| - 3.4e-06 27.1 0.0 3.9e-06 26.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219852085|ref|YP_002466517.1| - 0.00022 21.3 0.0 0.00025 21.1 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|219852085|ref|YP_002466517.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PKD PF00801.15 gi|219852086|ref|YP_002466518.1| - 1.9e-39 133.2 54.4 9.7e-14 50.8 3.3 6.1 6 1 0 6 6 6 4 PKD domain CBM_6 PF03422.10 gi|219852086|ref|YP_002466518.1| - 1.4e-23 83.4 4.3 1.4e-23 83.4 3.0 5.6 4 2 0 5 5 5 1 Carbohydrate binding module (family 6) DUF4480 PF13715.1 gi|219852086|ref|YP_002466518.1| - 4.3e-07 29.8 0.9 9.3e-06 25.6 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|219852086|ref|YP_002466518.1| - 1.1e-05 25.0 14.6 0.00098 18.8 0.2 6.6 7 1 0 7 7 7 2 PEGA domain DUF1918 PF08940.6 gi|219852086|ref|YP_002466518.1| - 0.02 14.2 0.0 1.9 7.8 0.0 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) ThiC-associated PF13667.1 gi|219852086|ref|YP_002466518.1| - 5.6 6.6 9.4 1.1 8.8 0.0 3.9 4 0 0 4 4 4 0 ThiC-associated domain NHL PF01436.16 gi|219852087|ref|YP_002466519.1| - 2.4e-104 336.3 43.2 2.7e-10 39.6 0.1 12.4 12 0 0 12 12 12 12 NHL repeat SGL PF08450.7 gi|219852087|ref|YP_002466519.1| - 1.5e-40 139.1 25.5 2.2e-06 27.2 0.2 10.5 2 2 6 9 9 9 9 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852087|ref|YP_002466519.1| - 2.1e-32 110.6 55.2 0.0043 16.8 0.8 12.8 12 0 0 12 12 12 12 Beta-propeller repeat Arylesterase PF01731.15 gi|219852087|ref|YP_002466519.1| - 2.5e-09 36.9 11.3 4.7 7.2 0.0 9.6 11 0 0 11 11 11 1 Arylesterase SdiA-regulated PF06977.6 gi|219852087|ref|YP_002466519.1| - 8.4e-08 31.4 3.2 4.9 6.0 0.0 8.2 7 2 2 9 9 9 1 SdiA-regulated Ldl_recept_b PF00058.12 gi|219852087|ref|YP_002466519.1| - 7.3e-07 29.4 1.9 11 6.3 0.0 8.5 9 3 0 9 9 8 0 Low-density lipoprotein receptor repeat class B EF-hand_1 PF00036.27 gi|219852087|ref|YP_002466519.1| - 7.5e-05 21.7 6.1 0.016 14.4 0.1 4.2 4 0 0 4 4 4 2 EF hand Death_2 PF14786.1 gi|219852087|ref|YP_002466519.1| - 0.0009 18.9 0.4 21 4.7 0.0 6.0 6 2 2 8 8 8 0 Tube Death domain US22 PF02393.11 gi|219852087|ref|YP_002466519.1| - 0.00096 19.1 0.0 61 3.6 0.0 5.7 4 3 0 4 4 4 0 US22 like EF-hand_6 PF13405.1 gi|219852087|ref|YP_002466519.1| - 0.0017 18.1 1.7 0.28 11.1 0.1 3.2 2 0 0 2 2 2 1 EF-hand domain LVIVD PF08309.6 gi|219852087|ref|YP_002466519.1| - 0.023 13.6 0.3 0.023 13.6 0.2 5.2 5 0 0 5 5 5 0 LVIVD repeat Reg_prop PF07494.6 gi|219852087|ref|YP_002466519.1| - 0.031 14.2 14.1 2e+02 2.5 0.0 9.5 11 0 0 11 11 10 0 Two component regulator propeller EF-hand_7 PF13499.1 gi|219852087|ref|YP_002466519.1| - 0.57 10.3 3.5 1.8 8.7 0.8 3.0 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219852087|ref|YP_002466519.1| - 0.67 9.6 4.3 0.17 11.5 0.2 2.1 2 0 0 2 2 2 0 EF-hand domain pair DUF1952 PF09189.5 gi|219852087|ref|YP_002466519.1| - 0.81 9.4 9.5 24 4.6 0.0 6.2 8 0 0 8 8 8 0 Domain of unknown function (DUF1952) zf-CDGSH PF09360.5 gi|219852088|ref|YP_002466520.1| - 2.2e-34 116.9 3.9 1.3e-16 60.1 0.5 2.4 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|219852088|ref|YP_002466520.1| - 3.1e-09 36.5 0.0 1.6e-08 34.2 0.0 2.2 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Cytochrom_B_N PF00033.14 gi|219852089|ref|YP_002466521.1| - 0.058 12.7 3.9 0.07 12.4 2.7 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Abhydrolase_9_N PF15420.1 gi|219852089|ref|YP_002466521.1| - 0.61 9.8 3.3 0.23 11.1 0.3 1.6 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus DUF204 PF02659.10 gi|219852089|ref|YP_002466521.1| - 3.2 7.9 6.8 4.5 7.4 3.3 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF DUF3963 PF13124.1 gi|219852089|ref|YP_002466521.1| - 8.6 6.2 11.3 2.7 7.8 0.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3963) Isochorismatase PF00857.15 gi|219852090|ref|YP_002466522.1| - 8.6e-40 136.5 0.1 9.8e-40 136.3 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family MFS_1 PF07690.11 gi|219852091|ref|YP_002466523.1| - 1.8e-49 168.3 52.8 6.2e-28 97.5 18.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219852091|ref|YP_002466523.1| - 2e-16 59.5 39.7 5.8e-10 38.3 11.6 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|219852091|ref|YP_002466523.1| - 2.1e-11 42.8 35.5 3.8e-09 35.4 11.0 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|219852091|ref|YP_002466523.1| - 5.7e-09 34.6 24.5 8.1e-09 34.1 17.0 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector ATG22 PF11700.3 gi|219852091|ref|YP_002466523.1| - 6.8e-06 24.8 35.7 0.0016 16.9 15.4 2.9 1 1 0 2 2 2 2 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|219852091|ref|YP_002466523.1| - 0.00015 21.4 9.5 0.016 14.9 0.2 3.9 3 1 0 3 3 3 2 MFS_1 like family BT1 PF03092.11 gi|219852091|ref|YP_002466523.1| - 0.00059 18.6 0.2 0.00059 18.6 0.1 3.3 1 1 1 3 3 3 2 BT1 family LacY_symp PF01306.14 gi|219852091|ref|YP_002466523.1| - 0.0006 18.4 26.8 0.012 14.1 1.9 3.8 2 2 0 4 4 4 3 LacY proton/sugar symporter Plasmid_stab_B PF10784.4 gi|219852091|ref|YP_002466523.1| - 0.068 12.7 1.9 3 7.5 0.0 3.2 3 0 0 3 3 3 0 Plasmid stability protein SAYSvFN PF10260.4 gi|219852091|ref|YP_002466523.1| - 8.4 6.2 8.1 4.5 7.1 0.4 3.3 3 0 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) HxlR PF01638.12 gi|219852092|ref|YP_002466524.1| - 6.3e-29 99.4 0.2 8.4e-29 99.0 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|219852092|ref|YP_002466524.1| - 3.1e-05 23.6 0.1 4.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|219852092|ref|YP_002466524.1| - 8.7e-05 22.1 0.2 0.00017 21.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|219852092|ref|YP_002466524.1| - 0.00033 20.2 0.3 0.00069 19.2 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|219852092|ref|YP_002466524.1| - 0.00059 19.5 0.3 0.001 18.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|219852092|ref|YP_002466524.1| - 0.00076 19.1 0.1 0.0013 18.4 0.1 1.4 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|219852092|ref|YP_002466524.1| - 0.0056 16.5 0.1 0.016 15.1 0.1 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|219852092|ref|YP_002466524.1| - 0.0057 16.7 0.1 0.01 15.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|219852092|ref|YP_002466524.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|219852092|ref|YP_002466524.1| - 0.0079 16.4 0.1 0.014 15.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|219852092|ref|YP_002466524.1| - 0.037 13.7 0.2 0.1 12.3 0.2 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|219852092|ref|YP_002466524.1| - 0.093 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2115 PF09888.4 gi|219852093|ref|YP_002466525.1| - 2.4e-49 167.5 0.0 2.8e-49 167.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HTH_20 PF12840.2 gi|219852094|ref|YP_002466526.1| - 1.6e-07 30.9 0.0 3.4e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|219852094|ref|YP_002466526.1| - 0.0017 18.6 0.0 0.004 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|219852094|ref|YP_002466526.1| - 0.0095 15.5 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Snapin_Pallidin PF14712.1 gi|219852094|ref|YP_002466526.1| - 0.041 14.1 1.0 0.041 14.1 0.7 1.7 2 0 0 2 2 2 0 Snapin/Pallidin ScpA_ScpB PF02616.9 gi|219852094|ref|YP_002466526.1| - 0.044 13.3 0.3 0.077 12.5 0.2 1.3 1 0 0 1 1 1 0 ScpA/B protein Vac_Fusion PF02346.11 gi|219852094|ref|YP_002466526.1| - 0.13 11.6 1.5 0.61 9.5 1.0 2.2 1 1 0 1 1 1 0 Chordopoxvirus fusion protein Mrr_N PF14338.1 gi|219852094|ref|YP_002466526.1| - 0.26 11.4 2.4 0.73 9.9 0.0 2.4 3 0 0 3 3 3 0 Mrr N-terminal domain AAA_32 PF13654.1 gi|219852094|ref|YP_002466526.1| - 0.7 8.4 2.9 1.1 7.8 1.4 1.7 1 1 0 1 1 1 0 AAA domain DUF3795 PF12675.2 gi|219852095|ref|YP_002466527.1| - 2.5e-16 59.5 13.8 3.6e-16 59.1 9.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) Nitroreductase PF00881.19 gi|219852096|ref|YP_002466528.1| - 2.6e-24 85.8 0.0 3.5e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|219852096|ref|YP_002466528.1| - 1.5e-11 43.3 15.7 1.8e-06 27.3 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852096|ref|YP_002466528.1| - 4.4e-11 42.4 10.4 7.5e-11 41.6 7.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852096|ref|YP_002466528.1| - 3.5e-10 40.0 5.5 4.4e-05 23.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852096|ref|YP_002466528.1| - 2.8e-09 36.4 14.8 1.2e-05 24.9 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852096|ref|YP_002466528.1| - 1.1e-08 34.4 15.3 0.00031 20.5 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219852096|ref|YP_002466528.1| - 8.9e-08 32.7 2.8 0.00017 22.2 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|219852096|ref|YP_002466528.1| - 9e-08 31.8 13.2 0.00044 20.3 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219852096|ref|YP_002466528.1| - 3.1e-07 30.5 13.3 2.2e-06 27.8 9.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852096|ref|YP_002466528.1| - 7.8e-07 29.3 3.5 0.0046 17.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852096|ref|YP_002466528.1| - 2.6e-06 27.7 10.2 0.0031 17.8 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852096|ref|YP_002466528.1| - 1e-05 25.4 13.8 0.0018 18.2 10.6 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852096|ref|YP_002466528.1| - 9.4e-05 22.1 11.9 0.00024 20.8 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852096|ref|YP_002466528.1| - 0.00018 21.7 21.0 0.002 18.5 5.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852096|ref|YP_002466528.1| - 0.0018 18.7 10.9 0.043 14.3 0.9 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219852096|ref|YP_002466528.1| - 0.0028 17.9 12.5 0.039 14.3 0.8 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain SnoaL_2 PF12680.2 gi|219852097|ref|YP_002466529.1| - 8e-08 32.6 0.1 9e-08 32.4 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|219852097|ref|YP_002466529.1| - 0.0012 18.7 0.1 0.0016 18.3 0.1 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|219852097|ref|YP_002466529.1| - 0.017 15.3 0.0 0.019 15.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) SIR2 PF02146.12 gi|219852097|ref|YP_002466529.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Sir2 family FMN_red PF03358.10 gi|219852098|ref|YP_002466530.1| - 3.6e-24 84.9 0.0 4.3e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852098|ref|YP_002466530.1| - 6.8e-14 51.8 0.0 7.4e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold SnoaL_2 PF12680.2 gi|219852099|ref|YP_002466531.1| - 5.5e-08 33.1 0.0 7.3e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|219852099|ref|YP_002466531.1| - 0.00043 20.2 0.0 0.00048 20.0 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain HxlR PF01638.12 gi|219852100|ref|YP_002466532.1| - 4.5e-33 112.7 0.5 5e-33 112.5 0.3 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|219852100|ref|YP_002466532.1| - 4.6e-05 23.6 0.0 6.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|219852100|ref|YP_002466532.1| - 4.6e-05 23.0 0.1 7.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|219852100|ref|YP_002466532.1| - 0.00016 21.3 0.2 0.00023 20.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|219852100|ref|YP_002466532.1| - 0.00016 21.6 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|219852100|ref|YP_002466532.1| - 0.0021 17.8 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|219852100|ref|YP_002466532.1| - 0.0034 17.0 0.0 0.0065 16.1 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain DUF4423 PF14394.1 gi|219852100|ref|YP_002466532.1| - 0.03 13.8 0.0 0.033 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.1 gi|219852100|ref|YP_002466532.1| - 0.039 13.7 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3116 PF11313.3 gi|219852100|ref|YP_002466532.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HxlR PF01638.12 gi|219852101|ref|YP_002466533.1| - 1.5e-34 117.5 0.0 1.8e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|219852101|ref|YP_002466533.1| - 0.00017 21.1 0.1 0.0012 18.4 0.0 2.2 2 1 1 3 3 3 1 MarR family PadR PF03551.9 gi|219852101|ref|YP_002466533.1| - 0.0027 17.4 0.0 0.0049 16.5 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|219852101|ref|YP_002466533.1| - 0.0072 15.9 0.0 0.023 14.3 0.0 1.8 3 0 0 3 3 3 1 MarR family HTH_27 PF13463.1 gi|219852101|ref|YP_002466533.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|219852101|ref|YP_002466533.1| - 0.018 15.0 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RST PF12174.3 gi|219852101|ref|YP_002466533.1| - 0.087 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain Nitroreductase PF00881.19 gi|219852102|ref|YP_002466534.1| - 9.2e-24 84.1 0.0 1.2e-23 83.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|219852102|ref|YP_002466534.1| - 9.4e-12 44.0 9.2 1.4e-05 24.4 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219852102|ref|YP_002466534.1| - 7.4e-09 35.7 9.6 1.3e-08 34.9 6.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852102|ref|YP_002466534.1| - 7.1e-08 32.7 9.6 2e-07 31.2 6.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852102|ref|YP_002466534.1| - 9.2e-08 31.6 11.5 9.9e-05 22.0 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219852102|ref|YP_002466534.1| - 1.8e-07 31.7 4.2 0.0017 19.0 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|219852102|ref|YP_002466534.1| - 3.6e-07 29.8 23.3 4.2e-06 26.4 8.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852102|ref|YP_002466534.1| - 6.6e-07 28.8 16.6 0.00019 21.1 2.1 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852102|ref|YP_002466534.1| - 2e-06 27.7 9.1 4.6e-06 26.5 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852102|ref|YP_002466534.1| - 3.4e-05 23.8 14.6 0.0038 17.4 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219852102|ref|YP_002466534.1| - 9.4e-05 22.7 10.8 0.0032 17.8 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852102|ref|YP_002466534.1| - 0.00042 20.1 12.2 0.076 12.8 2.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852102|ref|YP_002466534.1| - 0.00072 19.8 12.4 0.069 13.5 8.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852102|ref|YP_002466534.1| - 0.019 15.4 16.0 0.25 12.0 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852102|ref|YP_002466534.1| - 0.052 14.1 2.6 0.052 14.1 1.8 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219852102|ref|YP_002466534.1| - 0.066 13.6 9.8 0.44 10.9 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Abhydrolase_5 PF12695.2 gi|219852103|ref|YP_002466535.1| - 3e-13 49.7 0.0 3.9e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|219852103|ref|YP_002466535.1| - 6.4e-12 45.8 1.5 1.5e-11 44.6 1.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|219852103|ref|YP_002466535.1| - 1e-05 25.2 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|219852103|ref|YP_002466535.1| - 0.00079 19.0 0.1 0.0049 16.4 0.1 2.1 2 1 1 3 3 3 1 alpha/beta hydrolase fold Lipase_3 PF01764.20 gi|219852103|ref|YP_002466535.1| - 0.0045 16.5 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 3) DLH PF01738.13 gi|219852103|ref|YP_002466535.1| - 0.03 13.6 0.1 1.2 8.3 0.1 2.4 1 1 0 1 1 1 0 Dienelactone hydrolase family AXE1 PF05448.7 gi|219852103|ref|YP_002466535.1| - 0.044 12.2 0.2 0.84 8.0 0.0 2.1 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Nup35_RRM_2 PF14605.1 gi|219852103|ref|YP_002466535.1| - 0.15 11.8 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif DUF1428 PF07237.6 gi|219852105|ref|YP_002466537.1| - 6.9e-37 125.4 1.8 8e-37 125.2 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) NIPSNAP PF07978.8 gi|219852105|ref|YP_002466537.1| - 0.096 12.6 0.0 0.13 12.2 0.0 1.3 1 1 0 1 1 1 0 NIPSNAP 3-dmu-9_3-mt PF06983.8 gi|219852106|ref|YP_002466538.1| - 9e-34 116.2 0.2 6.4e-32 110.3 0.1 2.1 1 1 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase FMN_red PF03358.10 gi|219852108|ref|YP_002466540.1| - 3.2e-22 78.6 0.0 1.6e-21 76.3 0.0 1.8 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852108|ref|YP_002466540.1| - 1.1e-16 61.0 0.0 1.3e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|219852108|ref|YP_002466540.1| - 0.00098 19.1 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Radical_SAM PF04055.16 gi|219852108|ref|YP_002466540.1| - 0.083 13.0 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Radical SAM superfamily NADH-G_4Fe-4S_3 PF10588.4 gi|219852108|ref|YP_002466540.1| - 0.39 10.0 3.7 0.81 8.9 2.6 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Virulence_RhuM PF13310.1 gi|219852109|ref|YP_002466541.1| - 5.4e-75 251.7 0.0 7.2e-75 251.3 0.0 1.2 1 0 0 1 1 1 1 Virulence protein RhuM family TetR_N PF00440.18 gi|219852110|ref|YP_002466542.1| - 3.4e-16 58.6 0.2 6.3e-16 57.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR PF13972.1 gi|219852110|ref|YP_002466542.1| - 0.0001 21.7 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_Tnp_1_2 PF13022.1 gi|219852110|ref|YP_002466542.1| - 0.0043 16.8 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_22 PF13309.1 gi|219852110|ref|YP_002466542.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.22 gi|219852111|ref|YP_002466543.1| - 2.1e-30 105.7 0.0 3.7e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852111|ref|YP_002466543.1| - 5.5e-16 59.3 0.0 3.4e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SRP54 PF00448.17 gi|219852111|ref|YP_002466543.1| - 1.6e-05 24.4 0.1 3.5e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|219852111|ref|YP_002466543.1| - 0.0001 22.4 2.9 0.016 15.3 0.1 3.2 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|219852111|ref|YP_002466543.1| - 0.001 18.3 0.2 1.2 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|219852111|ref|YP_002466543.1| - 0.0022 18.0 0.2 0.0053 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|219852111|ref|YP_002466543.1| - 0.0048 16.8 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219852111|ref|YP_002466543.1| - 0.0051 16.3 0.2 0.011 15.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|219852111|ref|YP_002466543.1| - 0.0059 16.0 1.0 0.045 13.1 0.7 2.5 1 1 0 1 1 1 1 AAA-like domain AAA_23 PF13476.1 gi|219852111|ref|YP_002466543.1| - 0.013 15.8 0.7 0.041 14.2 0.3 1.8 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|219852111|ref|YP_002466543.1| - 0.016 15.0 0.0 0.073 13.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|219852111|ref|YP_002466543.1| - 0.024 14.8 1.6 0.31 11.2 0.2 3.2 1 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|219852111|ref|YP_002466543.1| - 0.028 14.1 0.5 0.12 12.1 0.3 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|219852111|ref|YP_002466543.1| - 0.036 13.6 0.2 0.16 11.5 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_15 PF13175.1 gi|219852111|ref|YP_002466543.1| - 0.037 13.0 0.0 0.99 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|219852111|ref|YP_002466543.1| - 0.04 13.0 0.0 0.082 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4162 PF13732.1 gi|219852111|ref|YP_002466543.1| - 0.044 14.2 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_14 PF13173.1 gi|219852111|ref|YP_002466543.1| - 0.047 13.5 0.1 2.7 7.9 0.0 2.9 3 0 0 3 3 3 0 AAA domain Miro PF08477.8 gi|219852111|ref|YP_002466543.1| - 0.071 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|219852111|ref|YP_002466543.1| - 0.083 13.7 0.0 0.32 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|219852111|ref|YP_002466543.1| - 0.087 12.2 0.3 0.52 9.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|219852111|ref|YP_002466543.1| - 0.094 12.5 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|219852111|ref|YP_002466543.1| - 0.12 11.5 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RICTOR_M PF14666.1 gi|219852111|ref|YP_002466543.1| - 0.15 11.0 0.0 0.45 9.4 0.0 1.7 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, middle domain ABC2_membrane PF01061.19 gi|219852112|ref|YP_002466544.1| - 1.8e-27 95.8 22.0 1.8e-27 95.8 15.3 1.6 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219852112|ref|YP_002466544.1| - 4.2e-10 39.1 27.9 4.2e-10 39.1 19.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219852112|ref|YP_002466544.1| - 0.00023 20.1 25.5 0.00086 18.2 17.7 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein FMN_red PF03358.10 gi|219852113|ref|YP_002466545.1| - 8.8e-24 83.7 0.0 1.2e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852113|ref|YP_002466545.1| - 2.6e-09 36.8 0.0 3.3e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|219852113|ref|YP_002466545.1| - 0.018 14.6 0.1 0.025 14.1 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) FMN_red PF03358.10 gi|219852114|ref|YP_002466546.1| - 4.6e-17 61.9 0.0 5.9e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852114|ref|YP_002466546.1| - 8.5e-11 41.7 0.0 1.1e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Aminotran_5 PF00266.14 gi|219852117|ref|YP_002466549.1| - 7e-123 410.0 0.1 1.7e-122 408.7 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V PAPS_reduct PF01507.14 gi|219852117|ref|YP_002466549.1| - 9.2e-32 110.2 0.0 1.5e-31 109.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Beta_elim_lyase PF01212.16 gi|219852117|ref|YP_002466549.1| - 2.7e-09 36.5 0.1 5.1e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|219852117|ref|YP_002466549.1| - 3e-09 36.4 0.6 7.1e-09 35.1 0.4 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|219852117|ref|YP_002466549.1| - 1.1e-08 34.4 0.0 1.9e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|219852117|ref|YP_002466549.1| - 6.6e-05 21.3 0.1 0.00011 20.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|219852117|ref|YP_002466549.1| - 0.018 13.4 0.0 0.032 12.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain SLA_LP_auto_ag PF05889.8 gi|219852117|ref|YP_002466549.1| - 0.041 12.3 0.0 0.078 11.4 0.0 1.4 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Asn_synthase PF00733.16 gi|219852117|ref|YP_002466549.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase FdhD-NarQ PF02634.10 gi|219852118|ref|YP_002466550.1| - 2.3e-45 154.8 0.9 2.7e-45 154.6 0.6 1.0 1 0 0 1 1 1 1 FdhD/NarQ family PAS_4 PF08448.5 gi|219852119|ref|YP_002466551.1| - 1.2e-59 199.1 0.0 1.4e-17 63.6 0.0 5.9 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|219852119|ref|YP_002466551.1| - 3.1e-44 149.5 0.0 2.2e-10 40.8 0.0 6.1 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|219852119|ref|YP_002466551.1| - 2.5e-31 107.7 0.1 1.5e-07 31.1 0.0 6.7 6 1 0 6 6 6 4 PAS fold PAS_8 PF13188.1 gi|219852119|ref|YP_002466551.1| - 1.2e-27 94.8 0.1 2.2e-05 24.1 0.0 5.8 5 0 0 5 5 5 5 PAS domain Response_reg PF00072.19 gi|219852119|ref|YP_002466551.1| - 1e-19 70.5 0.0 3.1e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.2 gi|219852119|ref|YP_002466551.1| - 1.8e-13 50.4 1.1 0.021 14.8 0.0 7.1 6 3 0 6 6 6 3 PAS fold HATPase_c PF02518.21 gi|219852119|ref|YP_002466551.1| - 3.2e-11 42.9 0.6 2.2e-10 40.2 0.0 2.7 3 0 0 3 3 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|219852119|ref|YP_002466551.1| - 1.3e-06 28.6 0.0 1.4 9.2 0.0 6.5 5 3 1 6 6 6 1 PAS domain PAS_3 PF08447.6 gi|219852119|ref|YP_002466551.1| - 2.8e-06 27.3 0.0 0.59 10.2 0.0 5.3 5 0 0 5 5 4 1 PAS fold GAF_2 PF13185.1 gi|219852119|ref|YP_002466551.1| - 4.1e-05 24.1 0.0 0.0074 16.7 0.0 3.5 4 0 0 4 4 3 1 GAF domain GAF_3 PF13492.1 gi|219852119|ref|YP_002466551.1| - 0.0016 18.4 0.0 0.0084 16.2 0.0 2.3 2 0 0 2 2 2 1 GAF domain APG6 PF04111.7 gi|219852119|ref|YP_002466551.1| - 0.013 14.5 7.7 0.16 10.9 0.4 2.4 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF2353 PF09789.4 gi|219852119|ref|YP_002466551.1| - 0.018 14.3 6.0 0.087 12.0 0.3 2.8 3 0 0 3 3 3 0 Uncharacterized coiled-coil protein (DUF2353) V_ATPase_I PF01496.14 gi|219852119|ref|YP_002466551.1| - 0.042 11.7 1.8 3.1 5.5 0.1 2.3 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family GAF PF01590.21 gi|219852119|ref|YP_002466551.1| - 0.048 13.7 0.0 0.25 11.4 0.0 2.3 2 0 0 2 2 2 0 GAF domain Cache_3 PF14827.1 gi|219852119|ref|YP_002466551.1| - 0.17 11.7 0.2 1.3 8.9 0.0 2.7 3 0 0 3 3 2 0 Sensory domain of two-component sensor kinase HALZ PF02183.13 gi|219852119|ref|YP_002466551.1| - 0.18 11.5 7.6 0.1 12.3 1.1 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF972 PF06156.8 gi|219852119|ref|YP_002466551.1| - 0.28 11.5 6.4 2.3 8.5 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF972) PEARLI-4 PF05278.7 gi|219852119|ref|YP_002466551.1| - 0.68 9.2 10.7 0.46 9.8 0.7 2.6 2 0 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DivIC PF04977.10 gi|219852119|ref|YP_002466551.1| - 4.9 6.7 12.9 0.95 8.9 1.5 3.2 2 0 0 2 2 2 0 Septum formation initiator DUF87 PF01935.12 gi|219852120|ref|YP_002466552.1| - 3.8e-25 89.0 0.0 5.4e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|219852120|ref|YP_002466552.1| - 2e-19 70.1 0.2 3.9e-18 65.9 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|219852120|ref|YP_002466552.1| - 5e-05 22.0 0.1 9.8e-05 21.1 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|219852120|ref|YP_002466552.1| - 0.00058 19.3 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|219852120|ref|YP_002466552.1| - 0.085 11.1 0.0 0.15 10.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|219852120|ref|YP_002466552.1| - 0.11 11.9 0.3 1 8.8 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_11 PF13086.1 gi|219852121|ref|YP_002466553.1| - 1e-23 84.1 0.0 2.1e-13 50.4 0.0 2.6 2 1 1 3 3 2 2 AAA domain AAA_12 PF13087.1 gi|219852121|ref|YP_002466553.1| - 4.1e-19 68.7 0.0 7.4e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|219852121|ref|YP_002466553.1| - 1.1e-14 54.4 0.0 3e-14 53.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|219852121|ref|YP_002466553.1| - 1.3e-12 47.3 0.1 5.6e-12 45.2 0.1 2.1 2 0 0 2 2 1 1 Part of AAA domain UvrD-helicase PF00580.16 gi|219852121|ref|YP_002466553.1| - 1.3e-06 27.9 0.0 2.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.9 gi|219852121|ref|YP_002466553.1| - 2.1e-06 27.4 0.0 4.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.1 gi|219852121|ref|YP_002466553.1| - 3.5e-06 27.1 0.0 1.5e-05 25.1 0.0 2.1 2 1 0 2 2 1 1 AAA domain PhoH PF02562.11 gi|219852121|ref|YP_002466553.1| - 3.9e-06 26.2 0.0 0.00061 19.0 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein Viral_helicase1 PF01443.13 gi|219852121|ref|YP_002466553.1| - 6.6e-05 22.5 0.0 0.084 12.3 0.0 3.3 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|219852121|ref|YP_002466553.1| - 0.00011 21.8 0.0 0.00023 20.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|219852121|ref|YP_002466553.1| - 0.00099 18.5 0.0 0.0022 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.1 gi|219852121|ref|YP_002466553.1| - 0.0031 17.6 0.0 0.0084 16.2 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain DUF2075 PF09848.4 gi|219852121|ref|YP_002466553.1| - 0.006 15.6 0.0 0.062 12.2 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PIF1 PF05970.9 gi|219852121|ref|YP_002466553.1| - 0.0065 15.4 0.0 0.39 9.5 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.1 gi|219852121|ref|YP_002466553.1| - 0.011 15.7 0.5 0.037 14.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain PDDEXK_1 PF12705.2 gi|219852121|ref|YP_002466553.1| - 0.012 15.0 0.1 0.028 13.7 0.1 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily ResIII PF04851.10 gi|219852121|ref|YP_002466553.1| - 0.013 15.3 0.0 0.031 14.0 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA PF00004.24 gi|219852121|ref|YP_002466553.1| - 0.015 15.4 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|219852121|ref|YP_002466553.1| - 0.017 15.4 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|219852121|ref|YP_002466553.1| - 0.02 14.4 0.0 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|219852121|ref|YP_002466553.1| - 0.022 13.6 0.0 0.04 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|219852121|ref|YP_002466553.1| - 0.031 13.7 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|219852121|ref|YP_002466553.1| - 0.049 13.0 0.0 0.38 10.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|219852121|ref|YP_002466553.1| - 0.058 13.2 0.0 0.4 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|219852121|ref|YP_002466553.1| - 0.082 12.3 0.0 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|219852121|ref|YP_002466553.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|219852121|ref|YP_002466553.1| - 0.1 12.0 0.0 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|219852121|ref|YP_002466553.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 KaiC Glycos_transf_N PF04413.11 gi|219852121|ref|YP_002466553.1| - 0.13 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Cas_Cas4 PF01930.12 gi|219852121|ref|YP_002466553.1| - 0.19 11.6 0.2 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF83 AAA_24 PF13479.1 gi|219852121|ref|YP_002466553.1| - 0.32 10.5 0.1 0.68 9.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Response_reg PF00072.19 gi|219852123|ref|YP_002466555.1| - 2.2e-34 117.8 0.0 6.2e-19 68.0 0.0 2.9 2 1 1 3 3 3 2 Response regulator receiver domain PAS_9 PF13426.1 gi|219852123|ref|YP_002466555.1| - 7.1e-23 80.9 0.1 2e-11 44.1 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|219852123|ref|YP_002466555.1| - 4.6e-22 78.1 1.2 6.6e-10 39.0 0.1 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|219852123|ref|YP_002466555.1| - 1.9e-21 75.8 0.1 4.6e-21 74.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|219852123|ref|YP_002466555.1| - 1.2e-14 54.0 0.4 2e-09 37.2 0.0 2.9 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|219852123|ref|YP_002466555.1| - 4.4e-07 29.7 0.5 2e-06 27.6 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|219852123|ref|YP_002466555.1| - 6.1e-07 29.4 2.5 0.0062 16.5 0.0 4.2 3 2 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|219852123|ref|YP_002466555.1| - 6.5e-07 29.5 0.0 0.00074 19.7 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|219852123|ref|YP_002466555.1| - 8.7e-07 28.5 0.5 0.02 14.7 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|219852123|ref|YP_002466555.1| - 0.00026 21.0 0.0 0.00091 19.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold Response_reg PF00072.19 gi|219852124|ref|YP_002466556.1| - 9.6e-17 61.0 0.0 1.2e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219852125|ref|YP_002466557.1| - 2.9e-13 49.5 0.0 5.7e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|219852125|ref|YP_002466557.1| - 1.5e-07 31.3 0.0 3.8e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|219852125|ref|YP_002466557.1| - 2.1e-07 30.9 0.0 4.8e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|219852125|ref|YP_002466557.1| - 7.6e-05 22.2 0.3 0.00018 20.9 0.2 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_9 PF13426.1 gi|219852125|ref|YP_002466557.1| - 0.00047 20.5 0.0 0.0034 17.7 0.0 2.5 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.1 gi|219852125|ref|YP_002466557.1| - 0.00067 19.4 0.0 0.0022 17.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|219852125|ref|YP_002466557.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|219852125|ref|YP_002466557.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.1 gi|219852125|ref|YP_002466557.1| - 0.067 12.9 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain TrbL PF04610.9 gi|219852126|ref|YP_002466558.1| - 2.8 7.5 14.3 3.1 7.4 9.5 1.3 1 1 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein TPP_enzyme_C PF02775.16 gi|219852128|ref|YP_002466560.1| - 1.4e-26 92.9 0.0 3.5e-26 91.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|219852128|ref|YP_002466560.1| - 1.6e-15 56.7 0.3 2.7e-15 56.0 0.2 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal E1_dh PF00676.15 gi|219852128|ref|YP_002466560.1| - 0.042 12.5 0.1 0.99 8.0 0.0 2.1 1 1 1 2 2 2 0 Dehydrogenase E1 component POR_N PF01855.14 gi|219852129|ref|YP_002466561.1| - 7.7e-52 176.0 0.1 1.3e-51 175.3 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|219852129|ref|YP_002466561.1| - 1.6e-27 96.4 0.0 3.2e-27 95.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|219852129|ref|YP_002466561.1| - 3.7e-07 29.7 0.1 6.6e-07 28.9 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|219852129|ref|YP_002466561.1| - 0.0047 16.8 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PocR PF10114.4 gi|219852130|ref|YP_002466562.1| - 8.1e-37 126.0 0.0 1.9e-36 124.8 0.0 1.7 1 0 0 1 1 1 1 Sensory domain found in PocR PAS_9 PF13426.1 gi|219852130|ref|YP_002466562.1| - 1.3e-26 92.9 0.0 8.7e-13 48.5 0.0 3.1 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.19 gi|219852130|ref|YP_002466562.1| - 3.6e-24 84.9 0.0 1e-23 83.4 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|219852130|ref|YP_002466562.1| - 1.2e-17 63.6 0.1 2.4e-08 33.7 0.0 3.7 3 1 1 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|219852130|ref|YP_002466562.1| - 1.4e-17 63.6 0.0 4.8e-08 33.0 0.0 3.7 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|219852130|ref|YP_002466562.1| - 1.3e-11 44.1 0.0 2.7e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|219852130|ref|YP_002466562.1| - 2.8e-11 42.8 0.2 1.6e-06 27.7 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|219852130|ref|YP_002466562.1| - 5.6e-07 29.5 0.0 0.0021 18.1 0.0 3.6 3 1 0 3 3 3 2 PAS fold PAS_11 PF14598.1 gi|219852130|ref|YP_002466562.1| - 0.00024 21.0 0.0 0.00058 19.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|219852130|ref|YP_002466562.1| - 0.0084 15.6 0.4 0.033 13.7 0.0 2.2 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.20 gi|219852130|ref|YP_002466562.1| - 0.029 14.3 0.1 0.029 14.3 0.1 2.6 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|219852130|ref|YP_002466562.1| - 0.069 12.7 0.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AATase PF07247.7 gi|219852132|ref|YP_002466564.1| - 1.2e-08 33.9 0.0 1.5e-08 33.6 0.0 1.0 1 0 0 1 1 1 1 Alcohol acetyltransferase Condensation PF00668.15 gi|219852132|ref|YP_002466564.1| - 0.0025 16.7 0.0 0.0034 16.2 0.0 1.2 1 0 0 1 1 1 1 Condensation domain Lactamase_B PF00753.22 gi|219852134|ref|YP_002466566.1| - 2.1e-10 40.5 0.5 9.5e-10 38.4 0.3 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219852134|ref|YP_002466566.1| - 1.7e-05 24.4 0.3 5.7e-05 22.7 0.2 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|219852134|ref|YP_002466566.1| - 0.13 11.9 0.1 6.6 6.4 0.0 2.4 2 1 0 2 2 2 0 Beta-lactamase superfamily domain DUF2284 PF10050.4 gi|219852135|ref|YP_002466567.1| - 3.4e-52 176.3 0.2 4.3e-52 176.0 0.1 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) OsmC PF02566.14 gi|219852136|ref|YP_002466568.1| - 1e-12 48.0 0.0 1.7e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF4186 PF13811.1 gi|219852137|ref|YP_002466569.1| - 0.16 11.6 1.7 0.18 11.5 1.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4186) LCM PF04072.9 gi|219852138|ref|YP_002466570.1| - 1.3e-49 168.2 0.0 1.8e-49 167.8 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase TetR_N PF00440.18 gi|219852139|ref|YP_002466571.1| - 2.5e-16 59.0 0.0 3.8e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|219852139|ref|YP_002466571.1| - 0.00028 20.8 0.0 0.00052 20.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor HAD_2 PF13419.1 gi|219852139|ref|YP_002466571.1| - 0.033 14.4 0.2 0.045 13.9 0.1 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4197 PF13852.1 gi|219852139|ref|YP_002466571.1| - 0.039 13.5 0.2 0.06 12.8 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4197) DUF4238 PF14022.1 gi|219852139|ref|YP_002466571.1| - 0.039 13.2 0.5 0.047 12.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) HTH_23 PF13384.1 gi|219852139|ref|YP_002466571.1| - 0.051 13.2 0.1 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_17 PF12728.2 gi|219852139|ref|YP_002466571.1| - 0.053 13.7 0.1 0.27 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain 3HCDH PF00725.17 gi|219852139|ref|YP_002466571.1| - 0.061 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HTH_22 PF13309.1 gi|219852139|ref|YP_002466571.1| - 0.077 12.7 0.0 0.29 10.8 0.0 2.0 1 0 0 1 1 1 0 HTH domain Glycos_transf_2 PF00535.21 gi|219852140|ref|YP_002466572.1| - 1e-31 109.8 0.0 1.4e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852140|ref|YP_002466572.1| - 5.2e-13 49.3 0.0 7e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|219852140|ref|YP_002466572.1| - 9.6e-12 44.5 0.0 1.2e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|219852140|ref|YP_002466572.1| - 8.5e-06 25.6 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|219852140|ref|YP_002466572.1| - 6.8e-05 22.2 0.1 9.4e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|219852140|ref|YP_002466572.1| - 0.021 15.1 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|219852141|ref|YP_002466573.1| - 9.4e-18 64.4 0.0 1.8e-17 63.5 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852141|ref|YP_002466573.1| - 5.2e-11 42.7 0.0 5e-10 39.5 0.0 2.0 1 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219852141|ref|YP_002466573.1| - 0.00043 20.5 0.0 0.0009 19.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2207 PF09972.4 gi|219852141|ref|YP_002466573.1| - 0.1 11.1 0.2 0.13 10.8 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF99 PF01949.11 gi|219852142|ref|YP_002466574.1| - 4.6e-62 208.4 0.0 5.3e-62 208.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF4147 PF13660.1 gi|219852142|ref|YP_002466574.1| - 0.1 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) DUF1628 PF07790.6 gi|219852143|ref|YP_002466575.1| - 2.9e-07 31.1 0.0 4.4e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1356 PF07092.7 gi|219852143|ref|YP_002466575.1| - 0.011 14.8 0.1 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) B-block_TFIIIC PF04182.7 gi|219852144|ref|YP_002466576.1| - 2.3e-07 30.5 0.1 3.2e-07 30.0 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|219852144|ref|YP_002466576.1| - 3.1e-05 23.5 0.0 4.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|219852144|ref|YP_002466576.1| - 0.00019 20.7 0.1 0.00028 20.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|219852144|ref|YP_002466576.1| - 0.0013 18.4 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219852144|ref|YP_002466576.1| - 0.019 15.2 0.1 0.024 14.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|219852144|ref|YP_002466576.1| - 0.056 13.1 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LSM PF01423.17 gi|219852145|ref|YP_002466577.1| - 1.1e-15 56.9 0.3 1.3e-15 56.6 0.2 1.1 1 0 0 1 1 1 1 LSM domain Pectate_lyase_3 PF12708.2 gi|219852146|ref|YP_002466578.1| - 1.1e-10 42.0 18.1 4.5e-08 33.4 12.0 2.6 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|219852146|ref|YP_002466578.1| - 9.3e-10 38.4 3.2 9.3e-10 38.4 2.2 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|219852146|ref|YP_002466578.1| - 0.0068 15.5 14.0 0.25 10.4 5.1 2.2 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) FMN_red PF03358.10 gi|219852147|ref|YP_002466579.1| - 1.2e-28 99.5 0.0 1.5e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852147|ref|YP_002466579.1| - 1.5e-10 40.9 0.0 2.2e-10 40.4 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Lactamase_B PF00753.22 gi|219852148|ref|YP_002466580.1| - 3e-29 102.0 0.6 3.9e-29 101.7 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219852148|ref|YP_002466580.1| - 3.4e-07 30.0 0.0 4.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TraB PF01963.12 gi|219852149|ref|YP_002466581.1| - 2.6e-46 158.1 0.0 3.5e-46 157.7 0.0 1.2 1 0 0 1 1 1 1 TraB family EI24 PF07264.6 gi|219852149|ref|YP_002466581.1| - 0.024 14.0 11.6 0.042 13.2 8.0 1.4 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) CxxCxxCC PF03692.10 gi|219852150|ref|YP_002466582.1| - 1.4e-11 44.7 0.0 3.4e-11 43.4 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain GATase PF00117.23 gi|219852151|ref|YP_002466583.1| - 1.5e-29 102.7 0.0 1.8e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|219852151|ref|YP_002466583.1| - 1.9e-10 40.5 0.5 4.4e-10 39.3 0.1 1.7 2 1 0 2 2 2 1 Peptidase C26 DBI_PRT PF02277.12 gi|219852152|ref|YP_002466584.1| - 6.5e-16 58.3 1.9 1.5e-15 57.1 0.1 2.2 1 1 2 3 3 3 1 Phosphoribosyltransferase DUF2665 PF11654.3 gi|219852152|ref|YP_002466584.1| - 0.16 11.5 0.2 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) PgpA PF04608.8 gi|219852153|ref|YP_002466585.1| - 4.4e-10 39.5 0.1 6.9e-10 38.8 0.0 1.3 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|219852154|ref|YP_002466586.1| - 3.5e-46 157.6 11.0 4.1e-46 157.4 7.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NIR_SIR PF01077.17 gi|219852155|ref|YP_002466587.1| - 3.5e-21 75.1 0.3 4.4e-21 74.8 0.2 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|219852155|ref|YP_002466587.1| - 6.1e-18 64.2 0.1 1.4e-17 63.0 0.1 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|219852155|ref|YP_002466587.1| - 6.8e-12 44.4 22.9 2.3e-07 30.1 1.2 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852155|ref|YP_002466587.1| - 2.9e-09 36.5 19.0 6.4e-06 25.8 7.8 3.4 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852155|ref|YP_002466587.1| - 8.8e-09 35.6 9.3 8.8e-09 35.6 6.5 3.5 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852155|ref|YP_002466587.1| - 2.4e-08 34.5 4.3 0.0011 19.7 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219852155|ref|YP_002466587.1| - 1.1e-07 32.0 10.2 1.1e-07 32.0 7.1 2.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852155|ref|YP_002466587.1| - 7.5e-07 29.0 9.8 0.00011 22.0 0.0 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852155|ref|YP_002466587.1| - 3e-05 24.2 10.1 0.0048 17.2 0.1 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852155|ref|YP_002466587.1| - 3.3e-05 23.5 24.5 0.0002 21.0 1.4 4.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852155|ref|YP_002466587.1| - 3.7e-05 23.4 12.7 0.00012 21.8 1.6 4.2 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|219852155|ref|YP_002466587.1| - 6.6e-05 22.7 4.0 6.6e-05 22.7 2.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852155|ref|YP_002466587.1| - 0.00032 21.0 16.4 0.047 14.1 3.2 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852155|ref|YP_002466587.1| - 0.0011 18.8 12.1 0.0011 18.8 8.4 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852155|ref|YP_002466587.1| - 0.0031 17.7 13.3 0.017 15.4 2.3 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852155|ref|YP_002466587.1| - 0.014 15.8 0.2 0.014 15.8 0.1 3.8 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219852155|ref|YP_002466587.1| - 0.018 15.5 26.2 0.13 12.8 3.2 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219852155|ref|YP_002466587.1| - 0.43 11.0 12.0 0.27 11.6 0.7 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain GTP_EFTU PF00009.22 gi|219852157|ref|YP_002466589.1| - 1.9e-56 190.4 0.0 2.5e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|219852157|ref|YP_002466589.1| - 1.2e-32 111.9 1.3 4.8e-32 110.0 0.1 2.4 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|219852157|ref|YP_002466589.1| - 1e-20 73.6 0.7 7.2e-20 70.8 0.2 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|219852157|ref|YP_002466589.1| - 6.9e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|219852157|ref|YP_002466589.1| - 2.7e-05 23.7 0.1 5.4e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|219852157|ref|YP_002466589.1| - 0.00032 21.1 0.0 0.0033 17.9 0.0 2.5 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|219852157|ref|YP_002466589.1| - 0.00087 18.4 0.1 0.0087 15.2 0.1 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|219852157|ref|YP_002466589.1| - 0.14 11.9 0.1 7.7 6.3 0.0 2.6 2 1 0 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|219852157|ref|YP_002466589.1| - 0.16 11.2 0.4 0.9 8.7 0.1 2.2 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S10 PF00338.17 gi|219852158|ref|YP_002466590.1| - 1.9e-29 101.3 0.0 2.1e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PMT_2 PF13231.1 gi|219852159|ref|YP_002466591.1| - 2.8e-20 72.8 17.5 2.8e-20 72.8 12.1 3.3 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|219852159|ref|YP_002466591.1| - 6.4e-13 48.6 20.1 6.4e-13 48.6 13.9 2.2 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase MarC PF01914.12 gi|219852160|ref|YP_002466592.1| - 3.7e-57 192.7 17.5 4.1e-57 192.5 12.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|219852160|ref|YP_002466592.1| - 0.0004 19.7 8.8 0.017 14.3 0.4 2.1 2 0 0 2 2 2 2 LysE type translocator DUF3522 PF12036.3 gi|219852160|ref|YP_002466592.1| - 0.061 13.1 7.3 0.16 11.7 1.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3522) MLANA PF14991.1 gi|219852160|ref|YP_002466592.1| - 0.15 12.0 0.5 0.47 10.4 0.3 1.9 1 0 0 1 1 1 0 Protein melan-A DUF1634 PF07843.6 gi|219852160|ref|YP_002466592.1| - 0.42 10.2 8.0 0.075 12.6 1.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1634) DUF4149 PF13664.1 gi|219852160|ref|YP_002466592.1| - 2.2 8.3 7.6 1.8 8.7 0.5 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) DUF996 PF06195.8 gi|219852160|ref|YP_002466592.1| - 9.1 6.2 16.9 2.6 8.0 7.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF996) LysE PF01810.13 gi|219852161|ref|YP_002466593.1| - 0.066 12.4 6.6 0.07 12.4 4.6 1.0 1 0 0 1 1 1 0 LysE type translocator EMP70 PF02990.11 gi|219852161|ref|YP_002466593.1| - 0.11 10.8 1.6 0.11 10.9 1.1 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 DUF1469 PF07332.6 gi|219852161|ref|YP_002466593.1| - 0.33 10.7 8.7 0.39 10.4 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) PRA1 PF03208.14 gi|219852161|ref|YP_002466593.1| - 0.9 8.8 4.1 1 8.7 2.8 1.2 1 0 0 1 1 1 0 PRA1 family protein Tetraspannin PF00335.15 gi|219852161|ref|YP_002466593.1| - 1.8 7.8 4.5 2.1 7.5 3.1 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF1700 PF08006.6 gi|219852161|ref|YP_002466593.1| - 2.4 7.4 4.9 3 7.1 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF973 PF06157.6 gi|219852161|ref|YP_002466593.1| - 7.3 5.4 8.7 8.6 5.2 6.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) CN_hydrolase PF00795.17 gi|219852162|ref|YP_002466594.1| - 1.2e-22 80.1 0.0 1.6e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF457 PF04307.9 gi|219852163|ref|YP_002466595.1| - 1.6e-17 63.2 21.8 2.8e-17 62.4 15.1 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|219852163|ref|YP_002466595.1| - 0.072 12.7 0.0 0.51 9.9 0.0 2.0 1 1 0 1 1 1 0 Zinc dependent phospholipase C PALP PF00291.20 gi|219852164|ref|YP_002466596.1| - 1e-69 235.1 4.6 1.2e-69 234.9 3.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme YcgR_2 PF12945.2 gi|219852165|ref|YP_002466597.1| - 0.025 14.4 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Flagellar protein YcgR DoxA PF07680.6 gi|219852165|ref|YP_002466597.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 TQO small subunit DoxA DUF538 PF04398.7 gi|219852165|ref|YP_002466597.1| - 0.14 12.4 0.3 0.32 11.2 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF538 FIST_C PF10442.4 gi|219852166|ref|YP_002466598.1| - 0.12 12.2 0.1 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 FIST C domain AFOR_C PF01314.13 gi|219852167|ref|YP_002466599.1| - 2.8e-138 460.7 0.0 3.4e-138 460.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|219852167|ref|YP_002466599.1| - 5e-75 251.2 0.0 8.4e-75 250.5 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|219852168|ref|YP_002466600.1| - 2.2e-14 53.6 0.0 2.5e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family eRF1_1 PF03463.10 gi|219852169|ref|YP_002466601.1| - 3.9e-31 107.3 0.0 6.9e-31 106.5 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|219852169|ref|YP_002466601.1| - 6.4e-17 61.8 0.1 2e-16 60.2 0.0 1.8 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|219852169|ref|YP_002466601.1| - 1.4e-08 35.1 0.0 4.8e-08 33.4 0.0 1.9 1 1 0 1 1 1 1 eRF1 domain 2 FbpA PF05833.6 gi|219852170|ref|YP_002466602.1| - 5.3e-58 196.6 0.0 6.9e-58 196.2 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|219852170|ref|YP_002466602.1| - 2.2e-23 81.9 0.0 4e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Acyl_transf_3 PF01757.17 gi|219852171|ref|YP_002466603.1| - 0.0011 17.8 0.0 0.0012 17.7 0.0 1.1 1 0 0 1 1 1 1 Acyltransferase family DUF1117 PF06547.7 gi|219852171|ref|YP_002466603.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1117) FUSC_2 PF13515.1 gi|219852171|ref|YP_002466603.1| - 0.18 11.6 4.9 0.3 10.9 3.4 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DUF3169 PF11368.3 gi|219852171|ref|YP_002466603.1| - 0.21 10.7 3.8 0.075 12.2 0.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) ABC_tran PF00005.22 gi|219852172|ref|YP_002466604.1| - 2.8e-39 134.5 0.0 2.5e-18 66.6 0.0 2.8 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|219852172|ref|YP_002466604.1| - 4e-13 49.1 5.7 2.9e-05 23.3 0.0 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|219852172|ref|YP_002466604.1| - 4.4e-12 45.3 2.8 9.9e-12 44.2 2.0 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.1 gi|219852172|ref|YP_002466604.1| - 2.7e-09 37.3 9.9 0.0076 16.2 0.0 4.2 2 2 2 4 4 4 2 AAA domain Fer4 PF00037.22 gi|219852172|ref|YP_002466604.1| - 4e-08 32.5 3.2 4e-08 32.5 2.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852172|ref|YP_002466604.1| - 6.9e-07 28.8 10.5 1.2e-05 24.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852172|ref|YP_002466604.1| - 9e-05 22.2 8.4 0.00016 21.4 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852172|ref|YP_002466604.1| - 0.00012 22.3 9.4 0.00025 21.3 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|219852172|ref|YP_002466604.1| - 0.00054 20.7 2.4 0.088 13.6 0.2 3.0 3 2 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|219852172|ref|YP_002466604.1| - 0.00084 19.4 0.3 0.12 12.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|219852172|ref|YP_002466604.1| - 0.00084 18.8 2.8 0.35 10.4 0.2 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_2 PF12797.2 gi|219852172|ref|YP_002466604.1| - 0.0009 19.0 2.7 0.0009 19.0 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|219852172|ref|YP_002466604.1| - 0.001 18.5 5.1 0.12 11.7 0.0 3.3 4 0 0 4 4 4 2 AAA domain Fer4_9 PF13187.1 gi|219852172|ref|YP_002466604.1| - 0.0017 18.6 8.6 0.0035 17.5 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|219852172|ref|YP_002466604.1| - 0.002 18.0 0.0 1.8 8.5 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|219852172|ref|YP_002466604.1| - 0.002 18.4 0.0 0.67 10.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|219852172|ref|YP_002466604.1| - 0.0021 17.1 0.0 0.13 11.3 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain DUF258 PF03193.11 gi|219852172|ref|YP_002466604.1| - 0.0026 16.9 0.5 0.79 8.9 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4_10 PF13237.1 gi|219852172|ref|YP_002466604.1| - 0.0032 17.2 9.9 0.0092 15.7 7.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Miro PF08477.8 gi|219852172|ref|YP_002466604.1| - 0.004 17.6 1.6 0.21 12.0 0.0 3.0 3 0 0 3 3 3 1 Miro-like protein RNA_helicase PF00910.17 gi|219852172|ref|YP_002466604.1| - 0.0056 16.8 0.1 3.5 7.8 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Fer4_3 PF12798.2 gi|219852172|ref|YP_002466604.1| - 0.02 15.4 5.0 0.02 15.4 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_16 PF13191.1 gi|219852172|ref|YP_002466604.1| - 0.042 13.8 2.9 8.2 6.3 0.0 2.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|219852172|ref|YP_002466604.1| - 0.09 12.1 1.1 4.5 6.6 0.0 2.5 2 1 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|219852172|ref|YP_002466604.1| - 0.095 12.5 1.1 11 5.9 0.0 2.9 2 1 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|219852172|ref|YP_002466604.1| - 0.096 12.3 1.1 2 8.0 0.0 2.4 2 0 0 2 2 2 0 NACHT domain VirE PF05272.6 gi|219852172|ref|YP_002466604.1| - 0.12 11.8 0.3 16 4.9 0.1 2.4 2 0 0 2 2 2 0 Virulence-associated protein E AAA PF00004.24 gi|219852172|ref|YP_002466604.1| - 0.14 12.3 0.1 26 5.0 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Fer4_8 PF13183.1 gi|219852172|ref|YP_002466604.1| - 0.17 11.9 7.8 0.34 10.9 5.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|219852172|ref|YP_002466604.1| - 0.17 10.3 0.0 3.5 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|219852172|ref|YP_002466604.1| - 0.97 9.1 8.8 6.9 6.4 0.7 3.2 3 0 0 3 3 3 0 Domain of unknown function DUF87 Fer4_16 PF13484.1 gi|219852172|ref|YP_002466604.1| - 0.98 10.2 8.8 0.08 13.7 0.9 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|219852172|ref|YP_002466604.1| - 1.2 9.6 12.8 0.068 13.5 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ArgK PF03308.11 gi|219852172|ref|YP_002466604.1| - 1.7 7.3 4.2 8.1 5.1 0.2 2.2 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|219852172|ref|YP_002466604.1| - 2.1 8.2 4.7 2.4 8.0 0.1 3.0 4 0 0 4 4 3 0 AAA domain Fer4_18 PF13746.1 gi|219852172|ref|YP_002466604.1| - 2.5 8.6 10.1 17 5.9 7.0 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852172|ref|YP_002466604.1| - 2.8 8.3 9.4 18 5.7 6.5 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852172|ref|YP_002466604.1| - 7.2 7.2 8.7 0.69 10.5 0.6 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain NOG1 PF06858.9 gi|219852174|ref|YP_002466606.1| - 4.5e-20 71.2 0.2 8.3e-20 70.4 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|219852174|ref|YP_002466606.1| - 1.7e-18 66.6 0.0 3.3e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|219852174|ref|YP_002466606.1| - 1.4e-11 43.9 0.0 2.2e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|219852174|ref|YP_002466606.1| - 1.4e-07 32.0 0.0 3.2e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|219852174|ref|YP_002466606.1| - 7.7e-05 22.5 0.1 0.0081 16.0 0.0 2.4 1 1 1 2 2 2 1 Dynamin family GTP_EFTU PF00009.22 gi|219852174|ref|YP_002466606.1| - 0.00015 21.2 0.1 0.0008 18.8 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|219852174|ref|YP_002466606.1| - 0.0029 17.0 0.0 0.0062 15.9 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|219852174|ref|YP_002466606.1| - 0.023 14.2 0.1 1.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|219852174|ref|YP_002466606.1| - 0.042 13.0 0.0 0.78 8.9 0.1 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.11 gi|219852174|ref|YP_002466606.1| - 0.044 12.9 0.0 0.099 11.7 0.0 1.7 1 0 0 1 1 1 0 AIG1 family NACHT PF05729.7 gi|219852174|ref|YP_002466606.1| - 0.099 12.2 0.0 0.38 10.3 0.0 2.0 1 1 0 1 1 1 0 NACHT domain PPV_E1_C PF00519.12 gi|219852174|ref|YP_002466606.1| - 0.12 11.0 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase FKBP_C PF00254.23 gi|219852175|ref|YP_002466607.1| - 3.3e-13 49.4 0.1 1.2e-12 47.6 0.0 2.0 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase CYTH PF01928.16 gi|219852176|ref|YP_002466608.1| - 1.2e-30 106.5 0.4 1.4e-30 106.3 0.3 1.0 1 0 0 1 1 1 1 CYTH domain CBM_6 PF03422.10 gi|219852176|ref|YP_002466608.1| - 0.0097 16.0 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) Nucleopor_Nup85 PF07575.8 gi|219852178|ref|YP_002466610.1| - 0.054 11.6 0.6 0.059 11.5 0.4 1.0 1 0 0 1 1 1 0 Nup85 Nucleoporin TNF PF00229.13 gi|219852178|ref|YP_002466610.1| - 0.11 12.0 0.9 0.16 11.5 0.6 1.2 1 0 0 1 1 1 0 TNF(Tumour Necrosis Factor) family SHR3_chaperone PF08229.6 gi|219852178|ref|YP_002466610.1| - 5.2 5.9 6.9 9.2 5.1 4.8 1.6 1 1 0 1 1 1 0 ER membrane protein SH3 Apc4_WD40 PF12894.2 gi|219852179|ref|YP_002466611.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain HTH_20 PF12840.2 gi|219852180|ref|YP_002466612.1| - 8.3e-06 25.5 0.0 3.1e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|219852180|ref|YP_002466612.1| - 8.8e-05 22.0 0.1 0.00031 20.3 0.0 2.0 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family TniQ PF06527.6 gi|219852180|ref|YP_002466612.1| - 0.00038 20.6 0.2 0.053 13.7 0.1 2.5 2 1 0 2 2 2 1 TniQ HTH_45 PF14947.1 gi|219852180|ref|YP_002466612.1| - 0.0027 17.4 0.0 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|219852180|ref|YP_002466612.1| - 0.0054 16.0 0.0 0.013 14.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|219852180|ref|YP_002466612.1| - 0.013 15.5 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pyridox_oxidase PF01243.15 gi|219852181|ref|YP_002466613.1| - 4.1e-20 71.5 0.0 5e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|219852181|ref|YP_002466613.1| - 0.0041 16.7 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) PSI_PsaH PF03244.9 gi|219852182|ref|YP_002466614.1| - 0.65 9.2 8.8 12 5.1 0.2 3.4 3 0 0 3 3 3 0 Photosystem I reaction centre subunit VI DUF2318 PF10080.4 gi|219852183|ref|YP_002466615.1| - 0.31 10.8 1.7 0.47 10.2 0.4 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) DUF3006 PF11213.3 gi|219852184|ref|YP_002466616.1| - 1.9e-15 56.3 4.6 2.2e-15 56.1 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF104 PF01954.11 gi|219852184|ref|YP_002466616.1| - 0.13 12.2 0.6 0.6 10.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF104 ABC_tran PF00005.22 gi|219852185|ref|YP_002466617.1| - 6.6e-33 113.9 0.0 9e-33 113.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|219852185|ref|YP_002466617.1| - 1.7e-11 44.0 0.0 4.2e-11 42.7 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|219852185|ref|YP_002466617.1| - 8.1e-05 22.7 0.0 0.11 12.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|219852185|ref|YP_002466617.1| - 0.00079 19.3 0.1 0.0042 17.0 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_23 PF13476.1 gi|219852185|ref|YP_002466617.1| - 0.00092 19.5 0.0 0.001 19.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain TOBE_3 PF12857.2 gi|219852185|ref|YP_002466617.1| - 0.0018 18.0 0.0 0.0051 16.6 0.0 1.9 1 0 0 1 1 1 1 TOBE-like domain AAA_10 PF12846.2 gi|219852185|ref|YP_002466617.1| - 0.0021 17.5 0.0 0.15 11.4 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|219852185|ref|YP_002466617.1| - 0.0033 16.6 0.0 0.55 9.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219852185|ref|YP_002466617.1| - 0.0042 16.5 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219852185|ref|YP_002466617.1| - 0.0064 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|219852185|ref|YP_002466617.1| - 0.013 15.2 0.1 0.061 13.0 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|219852185|ref|YP_002466617.1| - 0.014 15.4 0.1 0.028 14.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|219852185|ref|YP_002466617.1| - 0.016 15.0 0.1 0.14 12.0 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|219852185|ref|YP_002466617.1| - 0.08 11.5 0.2 7.2 5.0 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|219852185|ref|YP_002466617.1| - 0.11 12.0 0.1 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|219852185|ref|YP_002466617.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|219852185|ref|YP_002466617.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|219852185|ref|YP_002466617.1| - 0.14 12.3 0.0 0.39 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|219852186|ref|YP_002466618.1| - 2.1e-19 69.7 15.7 2.1e-19 69.7 10.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4605 PF15378.1 gi|219852186|ref|YP_002466618.1| - 2.9 7.6 6.3 1.4 8.6 0.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4605) UPF0066 PF01980.11 gi|219852187|ref|YP_002466619.1| - 1.5e-34 118.4 0.0 2e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 SBP_bac_11 PF13531.1 gi|219852188|ref|YP_002466620.1| - 6.7e-45 153.5 0.2 7.7e-45 153.2 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|219852188|ref|YP_002466620.1| - 3.2e-08 33.6 2.6 1.2e-06 28.5 1.8 2.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|219852188|ref|YP_002466620.1| - 4.8e-05 22.8 0.1 9.4e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.15 gi|219852188|ref|YP_002466620.1| - 0.027 13.7 0.1 0.041 13.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_8 PF13416.1 gi|219852188|ref|YP_002466620.1| - 0.031 13.9 1.5 0.33 10.6 0.1 2.3 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein TOBE PF03459.12 gi|219852189|ref|YP_002466621.1| - 1.1e-18 67.0 0.3 1.2e-18 66.9 0.2 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.5 gi|219852189|ref|YP_002466621.1| - 0.0055 16.6 0.0 0.0063 16.4 0.0 1.1 1 0 0 1 1 1 1 TOBE domain DUF4609 PF15382.1 gi|219852189|ref|YP_002466621.1| - 0.15 11.8 0.3 0.19 11.4 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4609) Methyltransf_18 PF12847.2 gi|219852191|ref|YP_002466623.1| - 1.2e-11 45.1 0.0 2.1e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852191|ref|YP_002466623.1| - 3.7e-10 39.7 0.0 6e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852191|ref|YP_002466623.1| - 5.7e-06 26.7 0.0 1.1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852191|ref|YP_002466623.1| - 5e-05 22.9 0.0 7.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852191|ref|YP_002466623.1| - 5.3e-05 23.6 0.0 8.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|219852191|ref|YP_002466623.1| - 0.00042 19.4 0.0 0.00059 19.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|219852191|ref|YP_002466623.1| - 0.001 18.2 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|219852191|ref|YP_002466623.1| - 0.0015 18.5 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219852191|ref|YP_002466623.1| - 0.0022 17.5 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|219852191|ref|YP_002466623.1| - 0.0051 15.8 0.0 0.0072 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|219852191|ref|YP_002466623.1| - 0.0083 15.5 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.10 gi|219852191|ref|YP_002466623.1| - 0.0096 15.0 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.1 gi|219852191|ref|YP_002466623.1| - 0.019 15.3 0.0 0.06 13.7 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|219852191|ref|YP_002466623.1| - 0.061 12.5 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase SAM_MT PF04445.8 gi|219852191|ref|YP_002466623.1| - 0.067 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|219852191|ref|YP_002466623.1| - 0.075 12.4 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MetW PF07021.7 gi|219852191|ref|YP_002466623.1| - 0.16 11.2 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FmdE PF02663.9 gi|219852192|ref|YP_002466624.1| - 8.7e-32 109.7 0.0 1.2e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|219852192|ref|YP_002466624.1| - 3.1e-08 33.1 0.2 6.3e-08 32.2 0.1 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|219852192|ref|YP_002466624.1| - 0.0017 18.3 0.6 0.0039 17.2 0.4 1.6 1 0 0 1 1 1 1 LIM domain zinc_ribbon_4 PF13717.1 gi|219852192|ref|YP_002466624.1| - 0.015 14.9 1.7 0.48 10.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|219852192|ref|YP_002466624.1| - 0.017 14.6 2.0 0.54 9.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|219852192|ref|YP_002466624.1| - 0.053 12.8 3.9 1.2 8.5 0.1 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|219852192|ref|YP_002466624.1| - 0.15 11.7 4.3 0.41 10.4 3.0 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Gin PF10764.4 gi|219852192|ref|YP_002466624.1| - 0.36 10.5 2.2 0.71 9.6 1.5 1.5 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin Methyltransf_18 PF12847.2 gi|219852193|ref|YP_002466625.1| - 1.7e-13 51.1 0.0 2.8e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852193|ref|YP_002466625.1| - 5.9e-10 39.0 0.0 1.1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852193|ref|YP_002466625.1| - 4.2e-07 29.6 0.0 6.3e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852193|ref|YP_002466625.1| - 6.2e-07 29.8 0.0 1.1e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852193|ref|YP_002466625.1| - 1.4e-06 28.7 0.0 2.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|219852193|ref|YP_002466625.1| - 1.2e-05 24.9 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|219852193|ref|YP_002466625.1| - 6.1e-05 22.2 0.0 0.00011 21.3 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G SAM_MT PF04445.8 gi|219852193|ref|YP_002466625.1| - 6.7e-05 22.1 0.0 9.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltransf_26 PF13659.1 gi|219852193|ref|YP_002466625.1| - 0.0001 22.3 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|219852193|ref|YP_002466625.1| - 0.00015 20.8 0.0 0.00021 20.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|219852193|ref|YP_002466625.1| - 0.0015 18.8 0.0 0.0034 17.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|219852193|ref|YP_002466625.1| - 0.0035 16.4 0.0 0.006 15.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|219852193|ref|YP_002466625.1| - 0.0063 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|219852193|ref|YP_002466625.1| - 0.0072 15.5 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_16 PF10294.4 gi|219852193|ref|YP_002466625.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|219852193|ref|YP_002466625.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|219852193|ref|YP_002466625.1| - 0.083 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Pyr_redox PF00070.22 gi|219852193|ref|YP_002466625.1| - 0.14 12.5 0.0 0.73 10.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF457 PF04307.9 gi|219852196|ref|YP_002466628.1| - 3.3e-13 49.2 7.8 1.2e-12 47.4 5.4 1.8 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2970 PF11174.3 gi|219852196|ref|YP_002466628.1| - 1.3 8.6 0.0 1.3 8.6 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2970) FecCD PF01032.13 gi|219852197|ref|YP_002466629.1| - 1.9e-91 306.1 28.4 2.3e-91 305.8 19.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|219852197|ref|YP_002466629.1| - 2.8e-06 26.8 14.7 4.9e-06 26.0 10.2 1.5 1 0 0 1 1 1 1 ABC 3 transport family DUF2881 PF11087.3 gi|219852197|ref|YP_002466629.1| - 0.38 10.2 0.0 0.38 10.2 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2881) ABC_tran PF00005.22 gi|219852198|ref|YP_002466630.1| - 1e-28 100.3 0.0 1.4e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852198|ref|YP_002466630.1| - 3.3e-14 53.5 0.3 1e-07 32.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219852198|ref|YP_002466630.1| - 2.6e-06 26.7 0.0 0.03 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|219852198|ref|YP_002466630.1| - 5.2e-06 25.8 0.0 0.022 14.0 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|219852198|ref|YP_002466630.1| - 0.00011 22.2 0.2 0.00037 20.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|219852198|ref|YP_002466630.1| - 0.00014 22.0 0.0 0.012 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|219852198|ref|YP_002466630.1| - 0.00029 20.0 0.1 0.00074 18.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|219852198|ref|YP_002466630.1| - 0.00086 19.6 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219852198|ref|YP_002466630.1| - 0.0034 16.8 0.0 0.0066 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|219852198|ref|YP_002466630.1| - 0.019 14.6 0.0 0.085 12.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|219852198|ref|YP_002466630.1| - 0.022 14.2 0.0 0.2 11.0 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|219852198|ref|YP_002466630.1| - 0.034 12.7 0.0 3.5 6.1 0.0 2.4 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|219852198|ref|YP_002466630.1| - 0.042 14.0 0.0 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|219852198|ref|YP_002466630.1| - 0.044 13.4 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|219852198|ref|YP_002466630.1| - 0.058 12.5 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MutS_V PF00488.16 gi|219852198|ref|YP_002466630.1| - 0.07 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 MutS domain V AAA_14 PF13173.1 gi|219852198|ref|YP_002466630.1| - 0.071 13.0 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|219852198|ref|YP_002466630.1| - 0.076 12.8 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|219852198|ref|YP_002466630.1| - 0.09 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|219852198|ref|YP_002466630.1| - 0.1 12.5 0.0 0.8 9.6 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|219852198|ref|YP_002466630.1| - 0.11 11.9 0.0 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|219852198|ref|YP_002466630.1| - 0.12 11.7 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|219852198|ref|YP_002466630.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|219852198|ref|YP_002466630.1| - 0.15 12.8 0.1 0.37 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|219852198|ref|YP_002466630.1| - 0.15 11.7 0.0 0.72 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Methyltransf_11 PF08241.7 gi|219852199|ref|YP_002466631.1| - 1.3e-19 70.4 0.0 1.9e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852199|ref|YP_002466631.1| - 2.4e-12 47.0 0.0 3.9e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852199|ref|YP_002466631.1| - 7.6e-12 45.2 0.0 9.1e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852199|ref|YP_002466631.1| - 3.5e-10 40.4 0.0 5.1e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852199|ref|YP_002466631.1| - 1.2e-09 37.9 0.0 1.7e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852199|ref|YP_002466631.1| - 2e-08 34.6 0.0 3.6e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852199|ref|YP_002466631.1| - 4.6e-08 33.1 0.0 1.4e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852199|ref|YP_002466631.1| - 2.6e-07 29.9 0.0 4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|219852199|ref|YP_002466631.1| - 0.00013 21.2 0.0 0.00023 20.4 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|219852199|ref|YP_002466631.1| - 0.00015 21.1 0.0 0.00024 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|219852199|ref|YP_002466631.1| - 0.00066 19.3 0.0 0.00092 18.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.15 gi|219852199|ref|YP_002466631.1| - 0.0083 15.2 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|219852199|ref|YP_002466631.1| - 0.034 13.4 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_8 PF05148.10 gi|219852199|ref|YP_002466631.1| - 0.063 12.9 0.0 0.22 11.1 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase UPF0020 PF01170.13 gi|219852199|ref|YP_002466631.1| - 0.083 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|219852199|ref|YP_002466631.1| - 0.13 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Peripla_BP_2 PF01497.13 gi|219852200|ref|YP_002466632.1| - 6.8e-10 38.4 0.0 9.4e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.1 gi|219852200|ref|YP_002466632.1| - 8.5e-05 22.6 0.1 0.00021 21.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219852200|ref|YP_002466632.1| - 0.013 15.5 0.1 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain YvfG PF09628.5 gi|219852200|ref|YP_002466632.1| - 0.18 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 YvfG protein Peripla_BP_2 PF01497.13 gi|219852201|ref|YP_002466633.1| - 3e-25 88.7 0.0 3.7e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Class_IIIsignal PF04021.7 gi|219852201|ref|YP_002466633.1| - 2.1 8.1 6.4 4.7 7.0 4.5 1.6 1 0 0 1 1 1 0 Class III signal peptide Cas_Cas2CT1978 PF09707.5 gi|219852204|ref|YP_002466636.1| - 4.1e-38 129.2 0.1 4.7e-38 129.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.11 gi|219852205|ref|YP_002466637.1| - 3e-21 75.7 0.0 1.8e-12 46.9 0.0 2.0 1 1 1 2 2 2 2 CRISPR associated protein Cas1 Chromo PF00385.19 gi|219852205|ref|YP_002466637.1| - 0.16 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain CRISPR_assoc PF08798.6 gi|219852206|ref|YP_002466638.1| - 1.7e-50 171.7 0.0 1.9e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas_Cas5d PF09704.5 gi|219852207|ref|YP_002466639.1| - 1.9e-55 187.8 0.8 2.2e-55 187.6 0.5 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.5 gi|219852208|ref|YP_002466640.1| - 3.9e-113 378.4 0.0 4.8e-113 378.1 0.0 1.0 1 0 0 1 1 1 1 CT1975-like protein PUL PF08324.6 gi|219852208|ref|YP_002466640.1| - 0.021 13.6 0.1 0.04 12.7 0.0 1.3 1 0 0 1 1 1 0 PUL domain CRISPR_Cse2 PF09485.5 gi|219852209|ref|YP_002466641.1| - 4.6e-27 94.8 0.5 5.5e-27 94.6 0.4 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) CRISPR_Cse1 PF09481.5 gi|219852210|ref|YP_002466642.1| - 7.2e-122 407.5 0.0 9e-122 407.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) IpaD PF06511.6 gi|219852210|ref|YP_002466642.1| - 0.085 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD Helicase_C PF00271.26 gi|219852211|ref|YP_002466643.1| - 0.00086 19.1 0.0 0.0032 17.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|219852211|ref|YP_002466643.1| - 0.0042 16.5 0.0 0.049 13.1 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Peptidase_M57 PF12388.3 gi|219852211|ref|YP_002466643.1| - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Mrr_cat PF04471.7 gi|219852212|ref|YP_002466644.1| - 9.3e-34 115.6 0.1 1.3e-33 115.1 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.1 gi|219852212|ref|YP_002466644.1| - 3.4e-24 84.7 0.0 7.7e-24 83.5 0.0 1.6 2 0 0 2 2 2 1 Mrr N-terminal domain GrpE PF01025.14 gi|219852217|ref|YP_002466649.1| - 3.1e-41 140.6 0.4 3.8e-41 140.3 0.3 1.0 1 0 0 1 1 1 1 GrpE DUF1451 PF07295.6 gi|219852217|ref|YP_002466649.1| - 0.0027 17.5 2.4 0.005 16.6 1.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1451) DUF1664 PF07889.7 gi|219852217|ref|YP_002466649.1| - 0.0035 17.1 0.5 0.0071 16.1 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) Myosin_tail_1 PF01576.14 gi|219852217|ref|YP_002466649.1| - 0.014 13.1 1.0 0.022 12.4 0.7 1.3 1 0 0 1 1 1 0 Myosin tail Kri1 PF05178.7 gi|219852217|ref|YP_002466649.1| - 0.026 14.7 2.7 1.8 8.8 0.4 2.3 2 0 0 2 2 2 0 KRI1-like family DUF1690 PF07956.6 gi|219852217|ref|YP_002466649.1| - 0.096 12.6 1.6 5.1 7.0 0.6 2.2 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) Ribosomal_L29 PF00831.18 gi|219852217|ref|YP_002466649.1| - 0.25 11.0 2.5 0.25 11.0 0.8 1.7 2 0 0 2 2 2 0 Ribosomal L29 protein CENP-Q PF13094.1 gi|219852217|ref|YP_002466649.1| - 0.52 10.3 4.8 1.5 8.8 3.3 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit SpoOE-like PF09388.5 gi|219852217|ref|YP_002466649.1| - 0.85 9.1 4.5 16 5.1 0.6 2.6 2 0 0 2 2 2 0 Spo0E like sporulation regulatory protein HSP70 PF00012.15 gi|219852218|ref|YP_002466650.1| - 6.4e-217 721.2 9.3 1e-197 657.8 4.6 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|219852218|ref|YP_002466650.1| - 1.7e-20 72.8 2.1 4.7e-20 71.4 1.4 1.7 1 0 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|219852218|ref|YP_002466650.1| - 0.00043 19.9 0.0 0.00089 18.9 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain CD4-extracel PF09191.5 gi|219852218|ref|YP_002466650.1| - 0.0028 17.6 0.0 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 CD4, extracellular StbA PF06406.6 gi|219852218|ref|YP_002466650.1| - 0.0068 15.3 0.3 0.071 12.0 0.1 2.2 1 1 1 2 2 2 1 StbA protein FtsA PF14450.1 gi|219852218|ref|YP_002466650.1| - 0.35 10.7 11.5 13 5.6 1.6 5.2 4 1 1 5 5 5 0 Cell division protein FtsA CTDII PF01556.13 gi|219852219|ref|YP_002466651.1| - 3e-32 110.3 0.1 2.4e-20 72.2 0.0 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|219852219|ref|YP_002466651.1| - 4.8e-27 93.4 3.2 8.1e-27 92.7 2.2 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|219852219|ref|YP_002466651.1| - 4.3e-12 45.9 14.7 6.9e-12 45.2 10.2 1.3 1 0 0 1 1 1 1 DnaJ central domain RRM_3 PF08777.6 gi|219852219|ref|YP_002466651.1| - 0.0065 16.3 0.4 0.012 15.5 0.3 1.3 1 0 0 1 1 1 1 RNA binding motif Lar_restr_allev PF14354.1 gi|219852219|ref|YP_002466651.1| - 0.042 14.1 0.5 0.042 14.1 0.4 2.7 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-CCHC_2 PF13696.1 gi|219852219|ref|YP_002466651.1| - 0.09 12.2 0.3 0.23 10.9 0.2 1.8 1 0 0 1 1 1 0 Zinc knuckle HypA PF01155.14 gi|219852219|ref|YP_002466651.1| - 0.33 10.6 7.1 0.13 11.9 0.4 2.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1356 PF07092.7 gi|219852219|ref|YP_002466651.1| - 7.2 5.7 15.3 1.7 7.7 2.0 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1356) Ogr_Delta PF04606.7 gi|219852219|ref|YP_002466651.1| - 9.4 5.9 8.2 5.7 6.6 0.2 3.3 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger HxlR PF01638.12 gi|219852220|ref|YP_002466652.1| - 1.5e-33 114.2 0.1 1.8e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|219852220|ref|YP_002466652.1| - 0.012 15.4 0.1 0.024 14.4 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|219852220|ref|YP_002466652.1| - 0.029 14.0 0.1 0.049 13.3 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|219852220|ref|YP_002466652.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Cupin_2 PF07883.6 gi|219852221|ref|YP_002466653.1| - 3.1e-11 42.5 0.8 4.9e-11 41.9 0.6 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|219852221|ref|YP_002466653.1| - 1.8e-07 30.9 0.6 3e-07 30.1 0.4 1.4 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|219852221|ref|YP_002466653.1| - 0.0013 18.3 0.4 0.0023 17.5 0.1 1.5 1 1 1 2 2 2 1 Cupin Cupin_1 PF00190.17 gi|219852221|ref|YP_002466653.1| - 0.007 15.8 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|219852221|ref|YP_002466653.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 ChrR Cupin-like domain Inhibitor_I78 PF11720.3 gi|219852221|ref|YP_002466653.1| - 0.077 12.7 0.1 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Peptidase inhibitor I78 family FMN_red PF03358.10 gi|219852222|ref|YP_002466654.1| - 9.4e-25 86.9 0.0 1.3e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852222|ref|YP_002466654.1| - 2.1e-15 56.8 0.0 2.5e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|219852223|ref|YP_002466655.1| - 1.4e-28 99.3 0.0 1.7e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852223|ref|YP_002466655.1| - 4e-07 29.7 0.0 5.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|219852223|ref|YP_002466655.1| - 0.087 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Aldo_ket_red PF00248.16 gi|219852224|ref|YP_002466656.1| - 1.9e-42 145.0 0.0 2.2e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|219852224|ref|YP_002466656.1| - 5.9e-10 39.3 6.4 1.5e-09 38.0 4.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852224|ref|YP_002466656.1| - 1.5e-08 34.5 5.1 3.2e-08 33.4 3.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852224|ref|YP_002466656.1| - 5.8e-08 32.8 5.7 5.8e-08 32.8 3.9 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852224|ref|YP_002466656.1| - 4.8e-07 30.1 3.4 0.0008 19.7 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219852224|ref|YP_002466656.1| - 2e-05 24.2 11.4 0.00029 20.5 8.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852224|ref|YP_002466656.1| - 3.2e-05 23.8 16.5 0.0019 18.3 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219852224|ref|YP_002466656.1| - 6.3e-05 23.2 8.9 0.00031 21.0 5.9 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|219852224|ref|YP_002466656.1| - 8.5e-05 22.1 6.8 0.02 14.5 0.4 2.4 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|219852224|ref|YP_002466656.1| - 0.00028 20.6 10.9 0.0013 18.5 0.7 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|219852224|ref|YP_002466656.1| - 0.0074 15.8 2.7 0.0074 15.8 1.9 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852224|ref|YP_002466656.1| - 0.018 14.8 9.4 0.12 12.2 0.2 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852224|ref|YP_002466656.1| - 0.083 13.4 4.3 1.8 9.1 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219852224|ref|YP_002466656.1| - 0.16 12.3 7.9 0.14 12.5 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|219852224|ref|YP_002466656.1| - 0.22 11.4 13.4 0.062 13.2 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219852224|ref|YP_002466656.1| - 2.6 8.8 13.9 6.6 7.5 3.1 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Flavodoxin_4 PF12682.2 gi|219852225|ref|YP_002466657.1| - 7.7e-51 171.5 0.0 9e-51 171.3 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|219852225|ref|YP_002466657.1| - 0.00054 19.4 0.0 0.26 10.6 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|219852225|ref|YP_002466657.1| - 0.054 12.9 0.1 0.07 12.6 0.1 1.3 1 1 0 1 1 1 0 Flavodoxin-like fold Aldo_ket_red PF00248.16 gi|219852226|ref|YP_002466658.1| - 6.8e-44 149.7 0.0 9.3e-44 149.3 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|219852226|ref|YP_002466658.1| - 3.9e-12 46.3 8.2 7.9e-12 45.3 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852226|ref|YP_002466658.1| - 6e-10 39.4 0.9 2.9e-07 30.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852226|ref|YP_002466658.1| - 2.1e-09 37.4 8.4 3.7e-09 36.6 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852226|ref|YP_002466658.1| - 8.3e-08 32.1 7.9 1.5e-07 31.3 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852226|ref|YP_002466658.1| - 8.2e-05 22.0 10.2 0.00027 20.3 1.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852226|ref|YP_002466658.1| - 0.00074 19.2 9.4 0.0033 17.2 6.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852226|ref|YP_002466658.1| - 0.001 19.4 8.8 0.0026 18.0 6.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|219852226|ref|YP_002466658.1| - 0.0012 18.4 0.2 0.0012 18.4 0.1 1.9 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|219852226|ref|YP_002466658.1| - 0.0022 18.7 4.5 0.079 13.7 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|219852226|ref|YP_002466658.1| - 0.0063 16.3 7.3 0.34 10.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852226|ref|YP_002466658.1| - 0.088 12.7 13.7 0.056 13.3 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219852226|ref|YP_002466658.1| - 0.26 11.7 16.7 0.15 12.5 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219852226|ref|YP_002466658.1| - 1.5 9.2 5.6 0.53 10.7 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|219852226|ref|YP_002466658.1| - 2.4 8.1 14.7 0.11 12.3 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852226|ref|YP_002466658.1| - 7.9 7.1 9.1 0.65 10.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF98 PF01947.11 gi|219852227|ref|YP_002466659.1| - 7.6e-29 100.3 0.0 1.2e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF98) GHMP_kinases_N PF00288.21 gi|219852227|ref|YP_002466659.1| - 6.2e-09 35.7 1.2 6.2e-09 35.7 0.8 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|219852227|ref|YP_002466659.1| - 7e-05 22.9 0.1 0.00024 21.2 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal UTRA PF07702.8 gi|219852227|ref|YP_002466659.1| - 0.0012 18.4 0.5 0.0037 16.8 0.3 1.9 1 1 0 1 1 1 1 UTRA domain Chor_lyase PF04345.8 gi|219852227|ref|YP_002466659.1| - 0.073 12.4 0.0 0.18 11.1 0.0 1.6 1 1 0 1 1 1 0 Chorismate lyase Radical_SAM PF04055.16 gi|219852229|ref|YP_002466661.1| - 3.9e-24 85.6 0.1 8.7e-24 84.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|219852229|ref|YP_002466661.1| - 1.2e-12 47.7 0.0 2.1e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Sulf_transp PF04143.9 gi|219852231|ref|YP_002466663.1| - 3.1e-05 23.9 11.1 3.1e-05 23.9 7.7 3.2 3 1 1 4 4 4 1 Sulphur transport Sulf_transp PF04143.9 gi|219852232|ref|YP_002466664.1| - 3e-08 33.5 14.8 3e-08 33.5 10.2 3.4 3 1 1 4 4 4 1 Sulphur transport DUF4341 PF14241.1 gi|219852232|ref|YP_002466664.1| - 6e-06 25.8 0.9 6e-06 25.8 0.6 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4341) DUF3493 PF11998.3 gi|219852232|ref|YP_002466664.1| - 3.1 7.7 7.9 14 5.6 2.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) Peptidase_M24 PF00557.19 gi|219852233|ref|YP_002466665.1| - 1.1e-31 110.1 0.0 1.7e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|219852233|ref|YP_002466665.1| - 9.8e-12 45.5 0.0 1.5e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Na_H_Exchanger PF00999.16 gi|219852234|ref|YP_002466666.1| - 1.6e-69 234.2 57.7 2.1e-69 233.8 40.0 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|219852234|ref|YP_002466666.1| - 1.2e-21 76.8 0.1 2.4e-21 75.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|219852234|ref|YP_002466666.1| - 8.5e-16 57.3 0.2 3e-15 55.5 0.2 2.0 2 0 0 2 2 2 1 TrkA-C domain Cupin_2 PF07883.6 gi|219852236|ref|YP_002466668.1| - 2.2e-12 46.2 0.0 3.1e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|219852236|ref|YP_002466668.1| - 4.1e-07 29.7 0.0 5.3e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|219852236|ref|YP_002466668.1| - 0.0015 17.8 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|219852236|ref|YP_002466668.1| - 0.0031 17.1 0.0 0.0039 16.8 0.0 1.1 1 0 0 1 1 1 1 Cupin EutQ PF06249.7 gi|219852236|ref|YP_002466668.1| - 0.0041 16.6 0.0 0.0046 16.4 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Asp_Arg_Hydrox PF05118.10 gi|219852236|ref|YP_002466668.1| - 0.0069 16.2 0.0 0.0082 15.9 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase DUF1498 PF07385.7 gi|219852236|ref|YP_002466668.1| - 0.021 13.9 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) Cupin_1 PF00190.17 gi|219852236|ref|YP_002466668.1| - 0.041 13.3 0.0 0.081 12.3 0.0 1.6 1 1 0 1 1 1 0 Cupin 2OG-FeII_Oxy_5 PF13759.1 gi|219852236|ref|YP_002466668.1| - 0.055 13.7 0.0 0.15 12.3 0.0 1.8 1 1 1 2 2 2 0 Putative 2OG-Fe(II) oxygenase AraC_N PF06719.8 gi|219852236|ref|YP_002466668.1| - 0.092 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus AraC_binding_2 PF14525.1 gi|219852236|ref|YP_002466668.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain DUF1255 PF06865.6 gi|219852236|ref|YP_002466668.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1255) CENP-F_N PF10481.4 gi|219852236|ref|YP_002466668.1| - 0.14 11.4 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Cenp-F N-terminal domain Prismane PF03063.15 gi|219852237|ref|YP_002466669.1| - 6.7e-164 546.0 0.1 7.5e-164 545.8 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HxlR PF01638.12 gi|219852238|ref|YP_002466670.1| - 3e-21 74.8 0.3 3.7e-21 74.5 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|219852238|ref|YP_002466670.1| - 0.00095 18.5 0.1 0.0022 17.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF505 PF04458.7 gi|219852238|ref|YP_002466670.1| - 0.0019 16.4 0.1 0.0024 16.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF2513 PF10711.4 gi|219852238|ref|YP_002466670.1| - 0.0038 17.2 0.0 0.0048 16.9 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|219852238|ref|YP_002466670.1| - 0.0043 16.7 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|219852238|ref|YP_002466670.1| - 0.0072 16.1 0.1 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|219852238|ref|YP_002466670.1| - 0.017 14.7 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|219852238|ref|YP_002466670.1| - 0.019 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|219852238|ref|YP_002466670.1| - 0.036 14.0 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|219852238|ref|YP_002466670.1| - 0.12 12.1 0.1 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repr_C PF02742.10 gi|219852239|ref|YP_002466671.1| - 5.8e-11 41.9 0.0 9.3e-11 41.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|219852239|ref|YP_002466671.1| - 2.4e-09 37.0 0.1 4e-09 36.2 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|219852239|ref|YP_002466671.1| - 0.00028 20.4 0.0 0.00091 18.8 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|219852239|ref|YP_002466671.1| - 0.0003 20.4 0.0 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219852239|ref|YP_002466671.1| - 0.0036 17.5 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|219852239|ref|YP_002466671.1| - 0.034 14.2 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|219852239|ref|YP_002466671.1| - 0.049 13.2 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain FeoC PF09012.5 gi|219852239|ref|YP_002466671.1| - 0.049 13.3 0.0 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Topoisom_bac PF01131.15 gi|219852239|ref|YP_002466671.1| - 0.05 12.4 0.0 0.069 11.9 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_6 PF01418.12 gi|219852239|ref|YP_002466671.1| - 0.079 12.7 0.0 7.5 6.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_45 PF14947.1 gi|219852239|ref|YP_002466671.1| - 0.083 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix CbiQ PF02361.11 gi|219852240|ref|YP_002466672.1| - 6.9e-23 81.3 17.4 9.2e-23 80.9 12.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.11 gi|219852241|ref|YP_002466673.1| - 3.1e-35 121.6 20.7 3.5e-35 121.4 14.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|219852241|ref|YP_002466673.1| - 0.0015 18.4 25.6 0.0015 18.4 17.7 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) DUF4396 PF14342.1 gi|219852241|ref|YP_002466673.1| - 0.012 15.6 1.3 0.012 15.6 0.9 2.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4396) DUF4131 PF13567.1 gi|219852241|ref|YP_002466673.1| - 9.9 5.5 10.1 1.4 8.3 2.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) NnrU PF07298.6 gi|219852242|ref|YP_002466674.1| - 0.036 13.4 0.2 0.052 12.9 0.1 1.3 1 1 0 1 1 1 0 NnrU protein DUF95 PF01944.12 gi|219852242|ref|YP_002466674.1| - 0.091 12.3 2.0 1.3 8.6 1.2 1.9 1 1 1 2 2 2 0 Integral membrane protein DUF95 PAS_9 PF13426.1 gi|219852243|ref|YP_002466675.1| - 1.6e-43 147.3 0.0 4.7e-14 52.6 0.0 5.5 4 1 1 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|219852243|ref|YP_002466675.1| - 1.2e-42 144.3 0.6 1.1e-11 44.7 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|219852243|ref|YP_002466675.1| - 2.3e-28 98.2 0.2 5e-08 32.7 0.0 4.9 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.6 gi|219852243|ref|YP_002466675.1| - 6.4e-27 93.4 0.0 6e-10 39.0 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219852243|ref|YP_002466675.1| - 6.5e-19 67.0 0.1 6.8e-05 22.5 0.0 4.8 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|219852243|ref|YP_002466675.1| - 3.2e-16 59.3 0.0 8.8e-16 57.9 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219852243|ref|YP_002466675.1| - 1.1e-13 50.8 0.2 5.4e-13 48.6 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|219852243|ref|YP_002466675.1| - 0.0035 17.5 0.0 0.38 11.0 0.0 3.5 3 0 0 3 3 3 1 PAS domain PEP-utilisers_N PF05524.8 gi|219852243|ref|YP_002466675.1| - 0.0036 17.1 8.9 0.16 11.7 0.0 4.2 4 0 0 4 4 4 2 PEP-utilising enzyme, N-terminal SPOB_a PF14689.1 gi|219852243|ref|YP_002466675.1| - 0.011 15.3 1.2 0.024 14.1 0.8 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|219852243|ref|YP_002466675.1| - 0.014 15.1 0.0 0.046 13.4 0.0 1.9 2 0 0 2 2 2 0 GHKL domain RBFA PF02033.13 gi|219852243|ref|YP_002466675.1| - 0.024 14.6 0.0 9.1 6.3 0.0 2.9 2 0 0 2 2 2 0 Ribosome-binding factor A Nitroreductase PF00881.19 gi|219852244|ref|YP_002466676.1| - 1.1e-28 100.0 0.0 1.4e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|219852244|ref|YP_002466676.1| - 5e-11 41.7 19.2 3.7e-06 26.3 2.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852244|ref|YP_002466676.1| - 6.2e-11 41.6 13.2 8e-06 25.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219852244|ref|YP_002466676.1| - 8.5e-11 42.0 6.6 5.6e-05 23.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219852244|ref|YP_002466676.1| - 3.1e-08 33.2 25.7 3e-07 30.1 9.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852244|ref|YP_002466676.1| - 5.5e-08 32.9 11.0 9.2e-08 32.2 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852244|ref|YP_002466676.1| - 8.3e-08 32.8 6.7 0.0018 19.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|219852244|ref|YP_002466676.1| - 3.4e-06 26.9 15.0 0.0012 18.9 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852244|ref|YP_002466676.1| - 3.4e-06 26.6 16.4 0.0019 18.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852244|ref|YP_002466676.1| - 5.3e-06 26.3 12.1 1.1e-05 25.3 8.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852244|ref|YP_002466676.1| - 0.00016 22.2 12.6 0.003 18.0 0.9 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|219852244|ref|YP_002466676.1| - 0.00033 20.4 13.7 0.0009 19.0 9.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852244|ref|YP_002466676.1| - 0.00059 20.2 13.8 0.012 15.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852244|ref|YP_002466676.1| - 0.00082 19.7 19.6 0.14 12.8 5.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852244|ref|YP_002466676.1| - 0.00094 19.4 14.6 0.13 12.6 10.1 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219852244|ref|YP_002466676.1| - 0.0028 17.9 13.4 0.29 11.5 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|219852244|ref|YP_002466676.1| - 0.66 9.8 10.2 25 4.7 6.2 3.0 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Peptidase_C39_2 PF13529.1 gi|219852245|ref|YP_002466677.1| - 5e-16 59.3 1.1 2.6e-15 57.0 0.0 2.7 3 0 0 3 3 3 1 Peptidase_C39 like family IF2_assoc PF08364.6 gi|219852245|ref|YP_002466677.1| - 0.14 12.1 0.4 3.4 7.7 0.6 2.7 2 1 1 3 3 3 0 Bacterial translation initiation factor IF-2 associated region GP41 PF00517.12 gi|219852246|ref|YP_002466678.1| - 0.013 15.0 1.3 0.078 12.5 0.1 2.3 2 0 0 2 2 2 0 Retroviral envelope protein TMEM154 PF15102.1 gi|219852246|ref|YP_002466678.1| - 0.054 13.2 2.5 0.52 10.0 0.1 2.5 2 0 0 2 2 2 0 TMEM154 protein family DUF4083 PF13314.1 gi|219852246|ref|YP_002466678.1| - 0.13 12.0 0.2 0.13 12.0 0.2 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) CcmH PF03918.9 gi|219852246|ref|YP_002466678.1| - 1.1 8.2 3.0 2.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Cytochrome C biogenesis protein DUF3043 PF11241.3 gi|219852247|ref|YP_002466679.1| - 0.061 12.9 0.4 0.061 12.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) GP41 PF00517.12 gi|219852248|ref|YP_002466680.1| - 0.3 10.6 7.8 0.025 14.1 1.7 1.9 2 0 0 2 2 2 0 Retroviral envelope protein Ni_hydr_CYTB PF01292.15 gi|219852248|ref|YP_002466680.1| - 6.7 6.0 13.3 1.3 8.4 0.1 3.5 3 1 0 3 3 3 0 Prokaryotic cytochrome b561 GP41 PF00517.12 gi|219852250|ref|YP_002466682.1| - 0.67 9.4 9.4 0.041 13.4 2.1 2.2 3 0 0 3 3 3 0 Retroviral envelope protein KTSC PF13619.1 gi|219852251|ref|YP_002466683.1| - 2.8e-20 71.6 0.6 3.5e-20 71.3 0.4 1.1 1 0 0 1 1 1 1 KTSC domain MarR_2 PF12802.2 gi|219852252|ref|YP_002466684.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|219852252|ref|YP_002466684.1| - 0.0076 15.8 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.6 gi|219852252|ref|YP_002466684.1| - 0.015 15.0 0.1 0.032 13.9 0.0 1.5 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.1 gi|219852252|ref|YP_002466684.1| - 0.036 13.4 0.2 0.085 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|219852252|ref|YP_002466684.1| - 0.066 12.8 0.2 0.26 10.9 0.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family EAP30 PF04157.11 gi|219852252|ref|YP_002466684.1| - 0.1 11.7 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family 7TM_GPCR_Sri PF10327.4 gi|219852255|ref|YP_002466687.1| - 0.35 9.7 1.7 0.4 9.6 1.2 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Sri KASH PF10541.4 gi|219852255|ref|YP_002466687.1| - 0.78 9.6 5.3 4.5 7.1 3.7 2.0 1 1 0 1 1 1 0 Nuclear envelope localisation domain Aldo_ket_red PF00248.16 gi|219852256|ref|YP_002466688.1| - 1.8e-42 145.1 0.0 2.3e-42 144.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|219852256|ref|YP_002466688.1| - 6.1e-09 36.1 10.5 1.5e-08 34.8 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852256|ref|YP_002466688.1| - 1.2e-08 35.0 12.8 2.3e-08 34.1 8.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852256|ref|YP_002466688.1| - 2.3e-08 33.9 10.6 4.5e-08 32.9 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852256|ref|YP_002466688.1| - 9.3e-06 25.9 6.9 0.0018 18.6 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852256|ref|YP_002466688.1| - 0.00062 19.2 11.3 0.0027 17.2 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852256|ref|YP_002466688.1| - 0.0077 16.0 17.3 0.035 13.9 12.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852256|ref|YP_002466688.1| - 0.012 15.5 7.1 1 9.2 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852256|ref|YP_002466688.1| - 0.012 16.3 7.3 0.21 12.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|219852256|ref|YP_002466688.1| - 0.036 14.6 5.3 0.036 14.6 3.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|219852256|ref|YP_002466688.1| - 0.23 11.0 7.7 0.71 9.5 1.3 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_7 PF12838.2 gi|219852256|ref|YP_002466688.1| - 1.2 9.6 18.3 9 6.7 12.7 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852256|ref|YP_002466688.1| - 1.5 9.3 19.6 2.4 8.7 5.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852256|ref|YP_002466688.1| - 1.7 8.6 12.8 0.14 12.1 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852256|ref|YP_002466688.1| - 5.4 7.1 20.3 3.5 7.7 6.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain MatE PF01554.13 gi|219852257|ref|YP_002466689.1| - 8.6e-55 184.7 44.0 9.2e-31 106.6 10.5 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|219852257|ref|YP_002466689.1| - 5.6e-08 32.6 13.3 5.6e-08 32.6 9.2 5.6 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MarR PF01047.17 gi|219852258|ref|YP_002466690.1| - 3.5e-16 58.6 0.0 7.5e-16 57.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|219852258|ref|YP_002466690.1| - 3.7e-13 48.9 0.0 7.1e-13 48.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|219852258|ref|YP_002466690.1| - 4.7e-07 29.1 0.0 1.1e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|219852258|ref|YP_002466690.1| - 9.2e-07 29.0 0.0 1.6e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|219852258|ref|YP_002466690.1| - 2.5e-05 24.2 0.0 3.5e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|219852258|ref|YP_002466690.1| - 0.0025 17.5 0.1 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.12 gi|219852258|ref|YP_002466690.1| - 0.0044 16.6 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_11 PF08279.7 gi|219852258|ref|YP_002466690.1| - 0.0057 16.2 0.0 0.015 14.9 0.0 1.7 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|219852258|ref|YP_002466690.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|219852258|ref|YP_002466690.1| - 0.055 13.2 0.1 0.25 11.1 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family RPA_C PF08784.6 gi|219852258|ref|YP_002466690.1| - 0.086 13.2 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_IclR PF09339.5 gi|219852258|ref|YP_002466690.1| - 0.09 12.3 0.1 0.09 12.3 0.1 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|219852258|ref|YP_002466690.1| - 0.12 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|219852258|ref|YP_002466690.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|219852258|ref|YP_002466690.1| - 0.14 11.6 1.0 0.27 10.8 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HATPase_c PF02518.21 gi|219852259|ref|YP_002466691.1| - 6.9e-26 90.1 0.1 1.1e-25 89.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219852259|ref|YP_002466691.1| - 3.3e-12 46.1 2.4 9.5e-12 44.7 0.0 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|219852259|ref|YP_002466691.1| - 6.2e-12 45.5 0.0 1.1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|219852259|ref|YP_002466691.1| - 6.3e-09 35.6 0.1 2e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|219852259|ref|YP_002466691.1| - 1.2e-08 35.2 0.0 2.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|219852259|ref|YP_002466691.1| - 0.00041 20.1 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|219852259|ref|YP_002466691.1| - 0.001 18.7 0.0 0.0025 17.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.6 gi|219852259|ref|YP_002466691.1| - 0.038 14.0 0.0 0.081 13.0 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.1 gi|219852259|ref|YP_002466691.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4131 PF13567.1 gi|219852259|ref|YP_002466691.1| - 1.3 8.3 4.5 0.85 9.0 1.7 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) BPD_transp_1 PF00528.17 gi|219852260|ref|YP_002466692.1| - 4e-19 68.8 13.5 4e-19 68.8 9.4 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|219852261|ref|YP_002466693.1| - 1.9e-34 118.8 0.0 3.1e-34 118.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852261|ref|YP_002466693.1| - 5.2e-15 56.1 0.0 1.7e-09 38.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|219852261|ref|YP_002466693.1| - 3.8e-07 30.2 0.0 5.4e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|219852261|ref|YP_002466693.1| - 1e-06 28.1 0.0 3.7e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|219852261|ref|YP_002466693.1| - 1.7e-05 24.0 0.1 2.7e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|219852261|ref|YP_002466693.1| - 0.0002 21.5 0.1 0.0019 18.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|219852261|ref|YP_002466693.1| - 0.00082 18.5 0.0 0.0047 16.1 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|219852261|ref|YP_002466693.1| - 0.0015 18.7 0.0 0.0075 16.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|219852261|ref|YP_002466693.1| - 0.0015 17.6 0.0 0.78 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|219852261|ref|YP_002466693.1| - 0.0021 17.9 0.3 0.013 15.4 0.2 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|219852261|ref|YP_002466693.1| - 0.0026 17.2 0.1 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|219852261|ref|YP_002466693.1| - 0.0029 16.1 0.0 0.31 9.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|219852261|ref|YP_002466693.1| - 0.0033 17.3 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|219852261|ref|YP_002466693.1| - 0.0037 17.6 0.0 0.005 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|219852261|ref|YP_002466693.1| - 0.0042 16.6 0.1 0.013 15.0 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|219852261|ref|YP_002466693.1| - 0.0074 16.0 0.2 0.023 14.4 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|219852261|ref|YP_002466693.1| - 0.0082 16.1 0.2 0.017 15.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain PEPCK_ATP PF01293.15 gi|219852261|ref|YP_002466693.1| - 0.011 14.2 0.1 0.015 13.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ABC_ATPase PF09818.4 gi|219852261|ref|YP_002466693.1| - 0.014 13.9 1.3 4.1 5.8 0.1 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|219852261|ref|YP_002466693.1| - 0.015 15.1 0.1 0.022 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|219852261|ref|YP_002466693.1| - 0.029 13.8 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|219852261|ref|YP_002466693.1| - 0.044 13.2 0.2 0.77 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|219852261|ref|YP_002466693.1| - 0.047 13.3 0.1 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|219852261|ref|YP_002466693.1| - 0.066 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|219852261|ref|YP_002466693.1| - 0.07 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|219852261|ref|YP_002466693.1| - 0.083 13.1 0.0 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|219852261|ref|YP_002466693.1| - 0.11 11.4 0.5 0.23 10.3 0.1 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|219852261|ref|YP_002466693.1| - 0.14 11.5 0.3 0.95 8.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|219852261|ref|YP_002466693.1| - 0.15 11.8 0.2 0.34 10.6 0.1 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_11 PF13086.1 gi|219852261|ref|YP_002466693.1| - 0.15 11.6 0.0 0.4 10.2 0.0 1.5 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|219852261|ref|YP_002466693.1| - 0.16 12.7 0.9 0.3 11.9 0.5 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|219852262|ref|YP_002466694.1| - 1.4e-16 60.5 11.9 1.4e-16 60.5 8.3 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DPM3 PF08285.6 gi|219852262|ref|YP_002466694.1| - 0.84 9.5 4.4 0.72 9.7 0.1 2.3 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) PAS_9 PF13426.1 gi|219852263|ref|YP_002466695.1| - 6.2e-49 164.6 0.1 2.5e-20 72.7 0.0 5.1 5 1 0 5 5 4 4 PAS domain PAS PF00989.19 gi|219852263|ref|YP_002466695.1| - 1.8e-35 121.1 0.1 7.8e-18 64.3 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|219852263|ref|YP_002466695.1| - 1.5e-32 111.8 1.7 3.6e-14 52.7 0.1 4.3 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|219852263|ref|YP_002466695.1| - 1.5e-28 98.7 0.0 2.8e-28 97.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219852263|ref|YP_002466695.1| - 4e-17 62.1 0.1 5.6e-09 35.9 0.1 3.6 4 0 0 4 4 3 2 PAS fold PAS_8 PF13188.1 gi|219852263|ref|YP_002466695.1| - 6.4e-16 57.5 0.2 0.0015 18.2 0.0 4.7 4 0 0 4 4 4 4 PAS domain HisKA PF00512.20 gi|219852263|ref|YP_002466695.1| - 2.8e-10 40.0 0.0 2.8e-10 40.0 0.0 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|219852263|ref|YP_002466695.1| - 0.00013 22.1 0.0 0.099 12.9 0.0 3.0 3 0 0 3 3 2 1 PAS domain PAS_7 PF12860.2 gi|219852263|ref|YP_002466695.1| - 0.0011 18.9 0.1 3.4 7.7 0.0 4.2 4 2 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.1 gi|219852263|ref|YP_002466695.1| - 0.0013 18.4 0.0 0.0036 16.9 0.0 1.8 1 0 0 1 1 1 1 GHKL domain Acetyltransf_7 PF13508.1 gi|219852263|ref|YP_002466695.1| - 0.013 15.6 0.0 3.3 7.9 0.0 2.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DivIC PF04977.10 gi|219852263|ref|YP_002466695.1| - 0.022 14.2 1.3 0.063 12.7 0.9 1.9 1 0 0 1 1 1 0 Septum formation initiator HATPase_c_3 PF13589.1 gi|219852263|ref|YP_002466695.1| - 0.071 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MAD PF05557.8 gi|219852263|ref|YP_002466695.1| - 0.23 9.4 1.1 0.38 8.7 0.8 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein Herpes_BLRF2 PF05812.7 gi|219852263|ref|YP_002466695.1| - 0.78 9.5 5.0 14 5.5 0.0 2.9 3 0 0 3 3 3 0 Herpesvirus BLRF2 protein Prefoldin PF02996.12 gi|219852263|ref|YP_002466695.1| - 1.2 8.7 3.8 0.44 10.2 0.3 2.0 2 0 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|219852263|ref|YP_002466695.1| - 3.2 7.5 7.8 0.25 11.1 1.5 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 KaiB PF07689.7 gi|219852264|ref|YP_002466696.1| - 2.8e-21 74.7 0.0 3.5e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 KaiB domain KaiB PF07689.7 gi|219852265|ref|YP_002466697.1| - 2.7e-29 100.4 0.1 3.1e-29 100.2 0.1 1.0 1 0 0 1 1 1 1 KaiB domain KaiC PF06745.8 gi|219852266|ref|YP_002466698.1| - 2.2e-104 347.5 0.0 2.3e-66 223.1 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|219852266|ref|YP_002466698.1| - 2.6e-21 75.9 0.6 1.2e-12 47.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain RecA PF00154.16 gi|219852266|ref|YP_002466698.1| - 2e-09 36.9 0.0 0.0003 19.9 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|219852266|ref|YP_002466698.1| - 4.4e-09 35.6 0.0 0.0014 17.5 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|219852266|ref|YP_002466698.1| - 7.4e-09 35.8 5.0 5.7e-06 26.4 0.1 3.2 3 1 0 3 3 3 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|219852266|ref|YP_002466698.1| - 9.2e-09 34.9 0.0 0.00014 21.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein GvpD PF07088.6 gi|219852266|ref|YP_002466698.1| - 2.1e-08 32.9 0.1 1.7e-05 23.3 0.0 2.6 2 1 0 2 2 2 2 GvpD gas vesicle protein AAA PF00004.24 gi|219852266|ref|YP_002466698.1| - 2.6e-08 34.1 0.0 0.00059 20.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|219852266|ref|YP_002466698.1| - 3.5e-08 33.0 0.0 0.013 15.2 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain NACHT PF05729.7 gi|219852266|ref|YP_002466698.1| - 2e-07 30.8 0.1 0.0013 18.4 0.0 2.4 2 0 0 2 2 2 2 NACHT domain DUF2075 PF09848.4 gi|219852266|ref|YP_002466698.1| - 2.4e-06 26.7 0.0 0.029 13.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|219852266|ref|YP_002466698.1| - 7.7e-06 26.0 0.1 0.037 14.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|219852266|ref|YP_002466698.1| - 4e-05 23.5 0.0 0.26 11.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|219852266|ref|YP_002466698.1| - 4.2e-05 23.3 0.0 0.14 11.8 0.0 2.5 2 0 0 2 2 2 2 Archaeal ATPase AAA_28 PF13521.1 gi|219852266|ref|YP_002466698.1| - 0.00016 21.6 1.6 0.58 10.0 0.0 3.3 3 0 0 3 3 3 1 AAA domain PAXNEB PF05625.6 gi|219852266|ref|YP_002466698.1| - 0.00034 19.5 4.1 0.031 13.1 0.3 2.3 2 0 0 2 2 2 2 PAXNEB protein RNA_helicase PF00910.17 gi|219852266|ref|YP_002466698.1| - 0.00091 19.3 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|219852266|ref|YP_002466698.1| - 0.0011 19.2 0.4 2.2 8.6 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.1 gi|219852266|ref|YP_002466698.1| - 0.0016 18.0 0.0 0.044 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|219852266|ref|YP_002466698.1| - 0.0023 16.8 0.0 0.27 10.1 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|219852266|ref|YP_002466698.1| - 0.0026 18.5 5.2 1.7 9.5 0.0 3.4 3 1 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|219852266|ref|YP_002466698.1| - 0.0029 17.1 0.0 2.1 7.7 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain Zeta_toxin PF06414.7 gi|219852266|ref|YP_002466698.1| - 0.0029 16.7 0.1 0.37 9.8 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin ATP-synt_ab PF00006.20 gi|219852266|ref|YP_002466698.1| - 0.003 17.1 0.0 0.87 9.0 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|219852266|ref|YP_002466698.1| - 0.0042 16.5 0.1 0.47 9.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|219852266|ref|YP_002466698.1| - 0.0044 16.7 0.1 1.5 8.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|219852266|ref|YP_002466698.1| - 0.0064 16.0 1.0 0.19 11.2 0.0 2.9 3 0 0 3 3 3 1 AAA domain PhoH PF02562.11 gi|219852266|ref|YP_002466698.1| - 0.014 14.6 0.1 1.1 8.4 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|219852266|ref|YP_002466698.1| - 0.016 15.2 0.1 4.6 7.3 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|219852266|ref|YP_002466698.1| - 0.019 13.6 0.0 0.17 10.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain TIP49 PF06068.8 gi|219852266|ref|YP_002466698.1| - 0.019 13.7 0.6 2.3 6.8 0.0 2.3 2 0 0 2 2 2 0 TIP49 C-terminus UvrD-helicase PF00580.16 gi|219852266|ref|YP_002466698.1| - 0.021 14.1 0.3 4.5 6.4 0.0 2.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_35 PF14516.1 gi|219852266|ref|YP_002466698.1| - 0.025 13.1 0.0 0.047 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|219852266|ref|YP_002466698.1| - 0.026 14.2 0.0 0.17 11.6 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|219852266|ref|YP_002466698.1| - 0.038 13.5 0.0 4 6.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|219852266|ref|YP_002466698.1| - 0.038 13.4 0.0 4.6 6.6 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase CobU PF02283.11 gi|219852266|ref|YP_002466698.1| - 0.038 13.3 0.0 1.5 8.2 0.0 2.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Thymidylate_kin PF02223.12 gi|219852266|ref|YP_002466698.1| - 0.061 12.6 0.3 0.23 10.7 0.0 2.1 3 0 0 3 3 2 0 Thymidylate kinase Mg_chelatase PF01078.16 gi|219852266|ref|YP_002466698.1| - 0.077 12.1 0.2 13 4.8 0.1 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|219852266|ref|YP_002466698.1| - 0.097 12.3 0.7 11 5.7 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|219852266|ref|YP_002466698.1| - 0.12 12.9 0.0 2.5 8.6 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein SBP_bac_3 PF00497.15 gi|219852267|ref|YP_002466699.1| - 2.4e-56 190.5 1.8 3.2e-56 190.0 1.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|219852267|ref|YP_002466699.1| - 1.4e-07 31.2 0.1 3.6e-07 29.8 0.1 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PAS_8 PF13188.1 gi|219852268|ref|YP_002466700.1| - 2.6e-10 39.7 0.0 6e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219852268|ref|YP_002466700.1| - 1e-09 38.1 0.0 1.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|219852268|ref|YP_002466700.1| - 2.8e-09 37.2 0.0 4.2e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|219852268|ref|YP_002466700.1| - 0.084 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 PAS fold Virul_fac_BrkB PF03631.10 gi|219852268|ref|YP_002466700.1| - 0.47 9.7 11.2 0.69 9.2 7.8 1.2 1 0 0 1 1 1 0 Virulence factor BrkB UvrD-helicase PF00580.16 gi|219852269|ref|YP_002466701.1| - 1.2e-47 162.8 0.0 1.9e-24 86.5 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|219852269|ref|YP_002466701.1| - 6.7e-38 131.0 0.0 8.8e-22 78.0 0.0 2.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|219852269|ref|YP_002466701.1| - 2.3e-24 86.1 0.0 6e-24 84.8 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|219852269|ref|YP_002466701.1| - 2.1e-11 43.4 0.5 5.5e-11 42.0 0.4 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|219852269|ref|YP_002466701.1| - 2.1e-10 40.6 0.0 2.4e-09 37.2 0.0 2.7 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Cas_Cas4 PF01930.12 gi|219852269|ref|YP_002466701.1| - 1.6e-06 28.1 0.0 4.5e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF83 AAA_30 PF13604.1 gi|219852269|ref|YP_002466701.1| - 0.00016 21.3 0.0 0.0033 17.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|219852269|ref|YP_002466701.1| - 0.00096 18.7 0.0 3.2 7.2 0.0 3.9 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Exonuc_V_gamma PF04257.9 gi|219852269|ref|YP_002466701.1| - 0.013 13.5 0.0 0.029 12.3 0.0 1.5 2 0 0 2 2 2 0 Exodeoxyribonuclease V, gamma subunit E1-E2_ATPase PF00122.15 gi|219852270|ref|YP_002466702.1| - 1.3e-57 194.5 3.1 1.3e-57 194.5 2.1 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|219852270|ref|YP_002466702.1| - 5.4e-33 114.0 9.2 5.4e-33 114.0 6.4 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|219852270|ref|YP_002466702.1| - 4.5e-29 102.4 1.5 4.5e-29 102.4 1.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219852270|ref|YP_002466702.1| - 8.5e-15 55.4 0.2 3.4e-14 53.4 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|219852270|ref|YP_002466702.1| - 1.6e-13 50.4 0.0 3.5e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|219852270|ref|YP_002466702.1| - 2.8e-12 45.8 0.0 6.5e-12 44.7 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|219852270|ref|YP_002466702.1| - 9.6e-05 22.0 0.6 0.00078 19.0 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase FeoB_N PF02421.13 gi|219852271|ref|YP_002466703.1| - 3.7e-59 198.4 0.0 5.7e-59 197.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|219852271|ref|YP_002466703.1| - 2.3e-21 75.7 28.0 2e-11 43.7 1.6 3.6 4 0 0 4 4 4 2 Nucleoside recognition FeoB_C PF07664.7 gi|219852271|ref|YP_002466703.1| - 7.4e-14 50.9 0.4 7.4e-14 50.9 0.3 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|219852271|ref|YP_002466703.1| - 1e-13 51.2 0.0 1.7e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.11 gi|219852271|ref|YP_002466703.1| - 3.8e-05 22.8 0.0 5.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.22 gi|219852271|ref|YP_002466703.1| - 0.00058 19.3 0.1 0.0035 16.8 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|219852271|ref|YP_002466703.1| - 0.0029 16.8 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|219852271|ref|YP_002466703.1| - 0.29 10.3 0.0 0.66 9.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Fe_dep_repr_C PF02742.10 gi|219852272|ref|YP_002466704.1| - 4.2e-28 96.8 0.2 1e-27 95.5 0.2 1.7 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|219852272|ref|YP_002466704.1| - 2.3e-20 72.2 0.2 7.4e-20 70.6 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|219852272|ref|YP_002466704.1| - 1.6e-15 56.8 0.3 2.7e-15 56.0 0.2 1.4 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.2 gi|219852272|ref|YP_002466704.1| - 5.9e-06 25.8 0.1 2.1e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|219852272|ref|YP_002466704.1| - 0.00032 20.3 0.0 0.0013 18.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|219852272|ref|YP_002466704.1| - 0.00081 19.1 0.0 0.002 17.9 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|219852272|ref|YP_002466704.1| - 0.0011 18.6 0.0 0.0028 17.3 0.0 1.7 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|219852272|ref|YP_002466704.1| - 0.0025 17.2 0.0 0.0062 15.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|219852272|ref|YP_002466704.1| - 0.0046 17.2 0.0 0.012 15.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|219852272|ref|YP_002466704.1| - 0.0064 16.2 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|219852272|ref|YP_002466704.1| - 0.0097 15.4 0.1 0.029 13.9 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|219852272|ref|YP_002466704.1| - 0.011 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|219852272|ref|YP_002466704.1| - 0.012 15.6 0.0 0.024 14.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|219852272|ref|YP_002466704.1| - 0.086 12.2 0.0 0.34 10.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TusA PF01206.12 gi|219852273|ref|YP_002466705.1| - 1.7e-22 78.7 0.0 2e-22 78.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|219852274|ref|YP_002466706.1| - 1.4e-17 63.8 0.1 1.3e-08 34.7 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|219852274|ref|YP_002466706.1| - 3.4e-15 56.1 0.0 3.8e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Aminotran_5 PF00266.14 gi|219852275|ref|YP_002466707.1| - 1.2e-64 218.3 0.0 1.4e-64 218.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.11 gi|219852276|ref|YP_002466708.1| - 3e-50 169.4 0.2 3.3e-50 169.2 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.12 gi|219852276|ref|YP_002466708.1| - 0.092 12.6 0.1 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain HTH_3 PF01381.17 gi|219852278|ref|YP_002466710.1| - 6.2e-13 48.3 0.0 7e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|219852278|ref|YP_002466710.1| - 1.9e-11 43.8 0.1 2e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|219852278|ref|YP_002466710.1| - 8.2e-06 25.9 0.0 9.5e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219852278|ref|YP_002466710.1| - 0.00011 22.3 0.0 0.00012 22.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|219852278|ref|YP_002466710.1| - 0.043 13.6 0.0 0.095 12.5 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2178 PF09946.4 gi|219852279|ref|YP_002466711.1| - 2.7e-13 49.6 6.4 7.2e-13 48.2 4.5 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) Lig_chan PF00060.21 gi|219852279|ref|YP_002466711.1| - 0.046 13.4 1.2 5.2 6.7 0.1 2.3 2 1 0 2 2 2 0 Ligand-gated ion channel DUF4293 PF14126.1 gi|219852279|ref|YP_002466711.1| - 0.15 11.9 3.0 0.21 11.4 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4293) Peptidase_M50B PF13398.1 gi|219852279|ref|YP_002466711.1| - 0.18 11.1 5.6 0.029 13.7 0.9 1.7 2 0 0 2 2 2 0 Peptidase M50B-like Ion_trans PF00520.26 gi|219852279|ref|YP_002466711.1| - 0.73 9.0 5.5 2.1 7.5 3.8 1.8 1 1 0 1 1 1 0 Ion transport protein DUF1673 PF07895.6 gi|219852279|ref|YP_002466711.1| - 6.4 6.2 6.9 18 4.8 4.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) Nitroreductase PF00881.19 gi|219852280|ref|YP_002466712.1| - 1.6e-31 109.3 0.0 2.1e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|219852280|ref|YP_002466712.1| - 0.0021 17.2 0.0 0.0039 16.4 0.0 1.4 1 0 0 1 1 1 1 Putative TM nitroreductase Rubrerythrin PF02915.12 gi|219852281|ref|YP_002466713.1| - 1.4e-29 103.2 3.4 1.8e-29 102.8 2.3 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|219852281|ref|YP_002466713.1| - 0.00064 19.4 1.6 0.0014 18.3 1.1 1.6 1 1 0 1 1 1 1 Ferritin-like domain HypA PF01155.14 gi|219852281|ref|YP_002466713.1| - 0.0015 18.2 0.7 0.0019 17.9 0.5 1.5 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Ferritin_2 PF13668.1 gi|219852281|ref|YP_002466713.1| - 0.06 13.2 1.8 0.12 12.3 1.2 1.6 1 1 0 1 1 1 0 Ferritin-like domain DZR PF12773.2 gi|219852281|ref|YP_002466713.1| - 0.066 13.0 2.0 0.11 12.3 1.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|219852281|ref|YP_002466713.1| - 0.12 11.9 1.7 0.51 10.0 1.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|219852281|ref|YP_002466713.1| - 0.21 10.9 1.8 14 5.1 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|219852281|ref|YP_002466713.1| - 0.65 9.9 6.6 2 8.3 0.3 2.4 1 1 1 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|219852281|ref|YP_002466713.1| - 0.78 9.4 4.1 2.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|219852281|ref|YP_002466713.1| - 1.3 8.2 4.8 8.7 5.6 3.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Aminotran_1_2 PF00155.16 gi|219852282|ref|YP_002466714.1| - 3e-31 108.7 0.0 3.6e-31 108.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|219852282|ref|YP_002466714.1| - 2.1e-06 26.5 0.0 2.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase AA_permease_2 PF13520.1 gi|219852283|ref|YP_002466715.1| - 8.1e-42 143.2 56.7 1e-41 142.9 39.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|219852283|ref|YP_002466715.1| - 2.1e-19 69.2 48.9 3.3e-19 68.6 33.9 1.3 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|219852283|ref|YP_002466715.1| - 4.5e-08 32.1 20.0 4.5e-08 32.1 13.8 2.4 2 1 0 2 2 2 1 Spore germination protein DNA_alkylation PF08713.6 gi|219852284|ref|YP_002466716.1| - 1.3e-63 214.4 0.7 1.4e-63 214.2 0.5 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Flavodoxin_5 PF12724.2 gi|219852285|ref|YP_002466717.1| - 8.2e-32 110.1 0.0 9.2e-32 110.0 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|219852285|ref|YP_002466717.1| - 8.3e-06 25.8 0.1 1.4e-05 25.0 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|219852285|ref|YP_002466717.1| - 6.2e-05 22.4 0.0 6.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|219852285|ref|YP_002466717.1| - 0.00067 19.0 0.0 0.41 10.0 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin FMN_red PF03358.10 gi|219852285|ref|YP_002466717.1| - 0.052 13.0 0.4 8.2 5.9 0.1 2.3 1 1 1 2 2 2 0 NADPH-dependent FMN reductase NosD PF05048.8 gi|219852286|ref|YP_002466718.1| - 1.3e-49 168.4 50.4 2.5e-37 128.3 20.3 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219852286|ref|YP_002466718.1| - 4.2e-22 78.5 51.4 1.3e-12 47.7 19.0 3.3 3 1 1 4 4 4 2 Right handed beta helix region Peptidase_S8 PF00082.17 gi|219852286|ref|YP_002466718.1| - 1.8e-17 63.4 5.8 2.2e-17 63.1 0.2 3.1 2 1 0 2 2 2 1 Subtilase family PKD PF00801.15 gi|219852286|ref|YP_002466718.1| - 1.5e-14 53.5 3.2 6.5e-14 51.4 2.2 2.1 1 0 0 1 1 1 1 PKD domain Pectate_lyase_3 PF12708.2 gi|219852286|ref|YP_002466718.1| - 0.00016 21.8 9.6 0.00016 21.8 6.7 4.6 2 2 2 4 4 4 1 Pectate lyase superfamily protein EF-hand_8 PF13833.1 gi|219852286|ref|YP_002466718.1| - 0.064 12.8 0.6 0.16 11.6 0.4 1.7 1 0 0 1 1 1 0 EF-hand domain pair HATPase_c PF02518.21 gi|219852287|ref|YP_002466719.1| - 4.8e-14 52.0 0.4 2.8e-13 49.5 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219852287|ref|YP_002466719.1| - 2e-08 34.5 0.1 6.7e-08 32.8 0.1 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|219852287|ref|YP_002466719.1| - 5.4e-07 29.3 0.1 1.2e-06 28.2 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|219852287|ref|YP_002466719.1| - 0.00021 21.2 0.0 0.00038 20.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|219852287|ref|YP_002466719.1| - 0.00054 19.6 0.0 0.0021 17.7 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|219852287|ref|YP_002466719.1| - 0.0013 18.5 0.0 0.0036 17.1 0.0 1.8 1 1 0 1 1 1 1 PAS domain APG6 PF04111.7 gi|219852287|ref|YP_002466719.1| - 0.011 14.7 2.9 0.02 13.9 2.0 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 SUKH_6 PF14568.1 gi|219852287|ref|YP_002466719.1| - 0.065 13.7 0.4 1.7 9.1 0.1 2.3 2 0 0 2 2 2 0 SMI1-KNR4 cell-wall HATPase_c_2 PF13581.1 gi|219852287|ref|YP_002466719.1| - 0.086 12.6 0.0 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF349 PF03993.7 gi|219852287|ref|YP_002466719.1| - 0.12 12.5 3.8 0.45 10.7 2.7 1.9 1 1 0 1 1 1 0 Domain of Unknown Function (DUF349) DUF3340 PF11818.3 gi|219852287|ref|YP_002466719.1| - 0.17 11.8 4.6 0.042 13.8 1.0 1.7 2 0 0 2 2 2 0 C-terminal domain of tail specific protease (DUF3340) CENP-H PF05837.7 gi|219852287|ref|YP_002466719.1| - 0.22 11.7 3.3 0.27 11.4 0.4 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) DivIC PF04977.10 gi|219852287|ref|YP_002466719.1| - 0.51 9.8 7.9 9.3 5.8 2.5 2.6 2 0 0 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|219852287|ref|YP_002466719.1| - 0.96 9.0 9.3 0.14 11.7 2.2 2.0 2 0 0 2 2 2 0 IncA protein Phage_integrase PF00589.17 gi|219852288|ref|YP_002466720.1| - 2.1e-33 115.4 0.0 3.1e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|219852288|ref|YP_002466720.1| - 2.9e-13 49.7 1.0 1.3e-12 47.6 0.2 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|219852288|ref|YP_002466720.1| - 6.6e-11 42.3 0.5 1.5e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain MerR PF00376.18 gi|219852288|ref|YP_002466720.1| - 0.089 12.3 0.2 6 6.5 0.0 3.3 4 0 0 4 4 4 0 MerR family regulatory protein Hexapep PF00132.19 gi|219852289|ref|YP_002466721.1| - 1.2e-11 43.5 10.6 4.9e-08 32.1 1.7 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219852289|ref|YP_002466721.1| - 0.00014 21.3 10.8 0.00074 19.0 2.5 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase TMP-TENI PF02581.12 gi|219852290|ref|YP_002466722.1| - 4.9e-58 195.2 0.7 5.6e-58 195.0 0.5 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|219852290|ref|YP_002466722.1| - 0.0017 17.3 1.8 0.0052 15.7 0.6 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF561) NMO PF03060.10 gi|219852290|ref|YP_002466722.1| - 0.0057 15.8 6.0 0.017 14.3 4.1 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|219852290|ref|YP_002466722.1| - 0.0073 15.5 0.2 0.019 14.2 0.1 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|219852290|ref|YP_002466722.1| - 0.027 13.5 0.6 0.05 12.6 0.4 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PRAI PF00697.17 gi|219852290|ref|YP_002466722.1| - 0.048 13.2 0.1 0.15 11.5 0.1 1.7 2 0 0 2 2 2 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Dus PF01207.12 gi|219852290|ref|YP_002466722.1| - 0.11 11.3 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) FlpD PF02662.11 gi|219852290|ref|YP_002466722.1| - 0.13 11.9 1.4 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit HK PF02110.10 gi|219852291|ref|YP_002466723.1| - 4.7e-81 271.5 7.3 5.3e-81 271.4 5.0 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|219852291|ref|YP_002466723.1| - 2e-05 23.8 2.3 3e-05 23.3 1.4 1.3 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|219852291|ref|YP_002466723.1| - 0.00019 20.8 1.5 0.00025 20.4 1.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase CbiQ PF02361.11 gi|219852292|ref|YP_002466724.1| - 2.3e-32 112.4 12.5 3.4e-32 111.8 8.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|219852293|ref|YP_002466725.1| - 1.5e-58 196.9 0.2 5.1e-30 104.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|219852293|ref|YP_002466725.1| - 6.6e-21 75.5 0.5 4.1e-09 36.8 0.0 4.3 2 2 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|219852293|ref|YP_002466725.1| - 2.2e-15 56.4 3.2 3.8e-10 39.3 0.1 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219852293|ref|YP_002466725.1| - 1.2e-08 34.3 2.6 0.0026 17.2 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219852293|ref|YP_002466725.1| - 3.9e-08 33.8 0.3 0.0092 16.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|219852293|ref|YP_002466725.1| - 2.2e-07 31.0 6.7 0.0012 18.8 0.1 3.2 2 2 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|219852293|ref|YP_002466725.1| - 5.2e-07 29.5 2.7 0.015 15.2 0.1 4.2 3 2 0 3 3 3 2 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|219852293|ref|YP_002466725.1| - 6.8e-07 28.9 0.8 0.03 13.9 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|219852293|ref|YP_002466725.1| - 1.5e-06 27.7 3.4 0.017 14.5 0.0 4.0 5 0 0 5 5 4 2 IstB-like ATP binding protein T2SE PF00437.15 gi|219852293|ref|YP_002466725.1| - 7.5e-06 25.0 0.6 0.00044 19.2 0.1 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|219852293|ref|YP_002466725.1| - 1.4e-05 24.3 0.3 0.13 11.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|219852293|ref|YP_002466725.1| - 1.8e-05 24.4 3.0 0.026 14.2 0.9 3.5 4 0 0 4 4 3 1 Part of AAA domain AAA_5 PF07728.9 gi|219852293|ref|YP_002466725.1| - 4.4e-05 23.2 0.3 0.025 14.2 0.0 2.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|219852293|ref|YP_002466725.1| - 4.6e-05 23.0 7.2 0.087 12.3 0.2 3.9 3 2 1 4 4 4 2 AAA domain NACHT PF05729.7 gi|219852293|ref|YP_002466725.1| - 5.6e-05 22.8 0.5 0.14 11.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain Mg_chelatase PF01078.16 gi|219852293|ref|YP_002466725.1| - 6.2e-05 22.2 0.3 0.029 13.5 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|219852293|ref|YP_002466725.1| - 7.3e-05 22.9 12.0 0.047 13.8 0.1 4.5 2 2 0 2 2 2 1 AAA domain MobB PF03205.9 gi|219852293|ref|YP_002466725.1| - 0.00011 21.9 2.5 0.14 11.8 0.0 3.1 3 1 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|219852293|ref|YP_002466725.1| - 0.00014 21.3 0.2 0.18 11.2 0.0 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|219852293|ref|YP_002466725.1| - 0.00022 20.7 0.4 0.35 10.3 0.0 2.8 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|219852293|ref|YP_002466725.1| - 0.00022 21.6 0.8 0.016 15.7 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein AAA_25 PF13481.1 gi|219852293|ref|YP_002466725.1| - 0.00029 20.2 7.2 0.023 14.0 1.2 3.4 3 1 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|219852293|ref|YP_002466725.1| - 0.0003 19.9 0.3 0.32 10.0 0.1 2.4 2 0 0 2 2 2 2 Zeta toxin DEAD PF00270.24 gi|219852293|ref|YP_002466725.1| - 0.00041 19.8 0.0 0.012 15.1 0.0 3.1 1 1 3 4 4 4 1 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|219852293|ref|YP_002466725.1| - 0.0007 19.3 0.3 1.7 8.2 0.0 3.1 3 1 0 3 3 3 2 Archaeal ATPase PhoH PF02562.11 gi|219852293|ref|YP_002466725.1| - 0.00073 18.8 0.4 0.034 13.3 0.1 2.8 2 0 0 2 2 2 1 PhoH-like protein AAA_14 PF13173.1 gi|219852293|ref|YP_002466725.1| - 0.00084 19.2 0.4 0.85 9.5 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|219852293|ref|YP_002466725.1| - 0.00089 19.4 2.9 1.3 9.2 0.1 3.4 3 2 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|219852293|ref|YP_002466725.1| - 0.00094 19.3 0.0 0.36 11.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_28 PF13521.1 gi|219852293|ref|YP_002466725.1| - 0.0012 18.7 2.2 0.93 9.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|219852293|ref|YP_002466725.1| - 0.0014 18.2 0.8 0.71 9.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|219852293|ref|YP_002466725.1| - 0.0016 18.1 5.6 0.044 13.4 0.3 3.4 3 1 1 4 4 3 1 NTPase AAA_33 PF13671.1 gi|219852293|ref|YP_002466725.1| - 0.002 18.0 1.8 1.4 8.8 0.1 2.9 2 1 0 2 2 2 2 AAA domain Zot PF05707.7 gi|219852293|ref|YP_002466725.1| - 0.0031 17.0 2.5 0.095 12.1 0.2 3.1 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) cobW PF02492.14 gi|219852293|ref|YP_002466725.1| - 0.0035 16.8 2.7 0.72 9.2 0.2 2.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|219852293|ref|YP_002466725.1| - 0.0045 16.4 2.4 2 7.7 0.1 3.0 3 1 1 4 4 4 2 AAA-like domain AAA_18 PF13238.1 gi|219852293|ref|YP_002466725.1| - 0.0071 16.6 9.5 2.9 8.2 0.0 3.7 2 1 1 3 3 3 0 AAA domain AAA_15 PF13175.1 gi|219852293|ref|YP_002466725.1| - 0.0086 15.1 0.3 0.033 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|219852293|ref|YP_002466725.1| - 0.0098 16.7 8.7 0.13 13.0 1.8 3.3 3 2 0 3 3 2 1 AAA domain DUF815 PF05673.8 gi|219852293|ref|YP_002466725.1| - 0.014 14.3 0.1 0.052 12.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ATP_bind_1 PF03029.12 gi|219852293|ref|YP_002466725.1| - 0.015 14.8 0.7 4.6 6.7 0.1 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KaiC PF06745.8 gi|219852293|ref|YP_002466725.1| - 0.031 13.4 3.6 2.7 7.0 0.1 3.0 3 0 0 3 3 3 0 KaiC NB-ARC PF00931.17 gi|219852293|ref|YP_002466725.1| - 0.041 12.7 0.8 4.2 6.1 0.2 2.5 3 0 0 3 3 2 0 NB-ARC domain TrkA_N PF02254.13 gi|219852293|ref|YP_002466725.1| - 0.05 13.6 0.4 5.1 7.1 0.0 2.9 2 0 0 2 2 2 0 TrkA-N domain ATP-synt_ab PF00006.20 gi|219852293|ref|YP_002466725.1| - 0.062 12.7 3.0 7.1 6.0 0.0 2.7 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain APS_kinase PF01583.15 gi|219852293|ref|YP_002466725.1| - 0.064 12.9 0.8 0.98 9.0 0.1 2.7 2 0 0 2 2 2 0 Adenylylsulphate kinase Sigma54_activ_2 PF14532.1 gi|219852293|ref|YP_002466725.1| - 0.077 13.0 0.1 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain DLIC PF05783.6 gi|219852293|ref|YP_002466725.1| - 0.14 10.8 0.0 1.1 7.8 0.0 2.3 3 0 0 3 3 2 0 Dynein light intermediate chain (DLIC) RNA12 PF10443.4 gi|219852293|ref|YP_002466725.1| - 0.14 10.6 0.1 9.6 4.5 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein DUF2813 PF11398.3 gi|219852293|ref|YP_002466725.1| - 0.15 11.0 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MMR_HSR1 PF01926.18 gi|219852293|ref|YP_002466725.1| - 0.24 11.3 2.0 3.8 7.5 0.2 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|219852293|ref|YP_002466725.1| - 7 5.1 10.6 19 3.6 0.2 4.1 4 1 0 4 4 3 0 Predicted ATPase of the ABC class DUF975 PF06161.6 gi|219852294|ref|YP_002466726.1| - 2.1 8.0 12.5 0.052 13.2 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF975) NTP_transf_3 PF12804.2 gi|219852295|ref|YP_002466727.1| - 7.7e-28 97.5 0.0 9.5e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|219852295|ref|YP_002466727.1| - 0.007 15.9 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|219852295|ref|YP_002466727.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 DNA_binding_1 PF01035.15 gi|219852297|ref|YP_002466729.1| - 9.5e-24 82.9 0.0 1.3e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Helicase_C_2 PF13307.1 gi|219852298|ref|YP_002466730.1| - 7e-32 110.6 0.0 2.5e-31 108.8 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|219852298|ref|YP_002466730.1| - 2.8e-19 69.1 1.7 1.1e-17 64.0 0.1 2.8 2 1 0 2 2 2 1 DEAD_2 ResIII PF04851.10 gi|219852298|ref|YP_002466730.1| - 9.5e-06 25.5 0.1 0.00055 19.8 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|219852298|ref|YP_002466730.1| - 0.0014 18.3 0.1 0.0045 16.7 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|219852298|ref|YP_002466730.1| - 0.0025 17.8 0.4 0.088 12.7 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|219852298|ref|YP_002466730.1| - 0.0089 16.1 0.1 1.3 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|219852298|ref|YP_002466730.1| - 0.017 14.7 0.4 0.47 10.0 0.1 2.4 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|219852298|ref|YP_002466730.1| - 0.04 13.4 0.3 0.31 10.4 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|219852298|ref|YP_002466730.1| - 0.063 13.5 0.0 1 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|219852298|ref|YP_002466730.1| - 0.15 10.6 0.0 0.28 9.8 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|219852298|ref|YP_002466730.1| - 0.39 10.0 1.8 17 4.7 0.1 2.8 2 1 0 3 3 3 0 AAA-like domain Fer4_12 PF13353.1 gi|219852299|ref|YP_002466731.1| - 5.7e-08 32.9 0.0 1.1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|219852299|ref|YP_002466731.1| - 2.6e-06 27.6 0.3 2.6e-06 27.6 0.2 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219852299|ref|YP_002466731.1| - 0.0002 21.3 0.0 0.00052 20.0 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|219852299|ref|YP_002466731.1| - 0.00097 19.4 0.4 0.0023 18.2 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Lyase_1 PF00206.15 gi|219852300|ref|YP_002466732.1| - 2.9e-53 181.1 0.8 4.6e-53 180.4 0.0 1.6 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.4 gi|219852300|ref|YP_002466732.1| - 2.1e-23 82.1 0.5 4.8e-23 80.9 0.4 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.6 gi|219852300|ref|YP_002466732.1| - 0.0012 18.6 0.3 0.0012 18.6 0.2 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal ORC6 PF05460.8 gi|219852300|ref|YP_002466732.1| - 0.0016 17.6 0.1 0.0024 17.0 0.1 1.2 1 0 0 1 1 1 1 Origin recognition complex subunit 6 (ORC6) HtrL_YibB PF09612.5 gi|219852300|ref|YP_002466732.1| - 0.05 12.8 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (HtrL_YibB) ASL_C2 PF14698.1 gi|219852300|ref|YP_002466732.1| - 0.63 10.1 3.2 2.5 8.2 0.1 3.2 4 0 0 4 4 4 0 Argininosuccinate lyase C-terminal ANTAR PF03861.9 gi|219852300|ref|YP_002466732.1| - 3.6 7.2 8.9 0.14 11.8 1.7 2.0 2 0 0 2 2 2 0 ANTAR domain CbiM PF01891.11 gi|219852301|ref|YP_002466733.1| - 8.5e-57 192.0 17.5 9.6e-57 191.8 12.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|219852301|ref|YP_002466733.1| - 0.0086 15.9 27.2 0.23 11.3 16.6 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3816) Baculo_11_kDa PF06143.6 gi|219852301|ref|YP_002466733.1| - 0.31 10.4 1.5 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family Herpes_LMP1 PF05297.6 gi|219852301|ref|YP_002466733.1| - 1.5 7.6 3.9 2.2 7.1 2.7 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) CbiN PF02553.10 gi|219852302|ref|YP_002466734.1| - 7e-17 61.2 0.3 1.2e-16 60.4 0.2 1.3 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PTS_EIIC PF02378.13 gi|219852302|ref|YP_002466734.1| - 0.044 12.6 1.7 0.042 12.6 0.4 1.5 1 1 0 1 1 1 0 Phosphotransferase system, EIIC CbiQ PF02361.11 gi|219852303|ref|YP_002466735.1| - 3.7e-29 101.9 8.7 5.6e-29 101.3 6.0 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|219852304|ref|YP_002466736.1| - 1.5e-29 102.9 0.0 2.9e-29 102.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852304|ref|YP_002466736.1| - 7e-18 65.5 0.1 2.9e-11 43.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219852304|ref|YP_002466736.1| - 8.3e-07 28.3 0.0 0.00023 20.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|219852304|ref|YP_002466736.1| - 1.9e-05 23.9 0.1 0.0013 18.0 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219852304|ref|YP_002466736.1| - 0.00013 21.4 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|219852304|ref|YP_002466736.1| - 0.00017 20.2 0.3 0.016 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|219852304|ref|YP_002466736.1| - 0.00053 19.4 0.1 1 8.7 0.0 2.8 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_23 PF13476.1 gi|219852304|ref|YP_002466736.1| - 0.013 15.7 0.1 0.022 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|219852304|ref|YP_002466736.1| - 0.069 13.0 0.5 0.37 10.7 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|219852304|ref|YP_002466736.1| - 0.096 12.2 0.1 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|219852304|ref|YP_002466736.1| - 0.1 12.4 0.0 0.49 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain UBA_e1_thiolCys PF10585.4 gi|219852304|ref|YP_002466736.1| - 0.12 11.7 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-activating enzyme active site AAA_16 PF13191.1 gi|219852304|ref|YP_002466736.1| - 0.13 12.2 0.3 0.46 10.4 0.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|219852304|ref|YP_002466736.1| - 0.13 12.0 0.1 2.2 8.1 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain Mg_chelatase PF01078.16 gi|219852304|ref|YP_002466736.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PAS_9 PF13426.1 gi|219852305|ref|YP_002466737.1| - 2.4e-25 88.9 0.0 1.4e-05 25.4 0.0 4.9 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|219852305|ref|YP_002466737.1| - 1.2e-19 70.3 0.0 1.6e-06 28.1 0.0 4.9 4 1 0 4 4 4 3 PAS fold PAS PF00989.19 gi|219852305|ref|YP_002466737.1| - 9.1e-16 57.6 0.5 3.4e-06 26.8 0.0 4.5 4 1 1 5 5 5 3 PAS fold PAS_3 PF08447.6 gi|219852305|ref|YP_002466737.1| - 8.6e-14 51.4 0.1 2.6e-05 24.2 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|219852305|ref|YP_002466737.1| - 4e-09 35.9 2.6 0.019 14.8 0.0 4.7 5 0 0 5 5 5 2 PAS domain Sigma70_r4_2 PF08281.7 gi|219852305|ref|YP_002466737.1| - 0.0042 16.5 0.2 0.021 14.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|219852305|ref|YP_002466737.1| - 0.033 13.8 0.1 0.1 12.2 0.1 1.9 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|219852305|ref|YP_002466737.1| - 0.033 13.5 0.2 0.11 11.9 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|219852305|ref|YP_002466737.1| - 0.043 13.6 0.1 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TBPIP PF07106.8 gi|219852305|ref|YP_002466737.1| - 0.045 13.2 1.9 0.65 9.5 0.0 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_23 PF13384.1 gi|219852305|ref|YP_002466737.1| - 0.046 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|219852305|ref|YP_002466737.1| - 0.056 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|219852305|ref|YP_002466737.1| - 0.058 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|219852305|ref|YP_002466737.1| - 0.11 11.9 0.1 0.96 8.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MCPsignal PF00015.16 gi|219852306|ref|YP_002466738.1| - 9.6e-48 162.5 28.0 9.6e-48 162.5 19.4 4.9 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219852306|ref|YP_002466738.1| - 0.0049 16.8 0.0 0.62 10.1 0.0 2.9 2 0 0 2 2 2 1 PAS fold Tweety PF04906.8 gi|219852306|ref|YP_002466738.1| - 0.028 12.8 13.5 0.15 10.4 1.0 5.0 5 0 0 5 5 5 0 Tweety PAS PF00989.19 gi|219852306|ref|YP_002466738.1| - 0.041 13.6 0.0 0.14 11.9 0.0 1.9 1 0 0 1 1 1 0 PAS fold Baculo_PEP_C PF04513.7 gi|219852306|ref|YP_002466738.1| - 0.13 12.1 43.2 1.1 9.0 1.2 7.1 1 1 5 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec34 PF04136.10 gi|219852306|ref|YP_002466738.1| - 0.16 11.6 1.2 3.7 7.2 0.3 3.8 2 1 2 4 4 4 0 Sec34-like family DUF948 PF06103.6 gi|219852306|ref|YP_002466738.1| - 0.18 11.7 26.3 0.8 9.5 0.6 7.7 6 2 1 7 7 7 0 Bacterial protein of unknown function (DUF948) GAS PF13851.1 gi|219852306|ref|YP_002466738.1| - 0.18 10.9 2.6 2.6 7.2 0.1 2.9 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Muted PF14942.1 gi|219852306|ref|YP_002466738.1| - 0.25 11.2 11.3 0.91 9.3 0.2 5.4 5 1 1 6 6 6 0 Organelle biogenesis, Muted-like protein Fib_alpha PF08702.5 gi|219852306|ref|YP_002466738.1| - 0.43 10.7 6.2 6.5 6.8 0.1 4.6 4 1 1 5 5 5 0 Fibrinogen alpha/beta chain family BAR PF03114.13 gi|219852306|ref|YP_002466738.1| - 0.69 9.3 4.7 4.7 6.6 0.0 3.8 4 0 0 4 4 4 0 BAR domain DUF2203 PF09969.4 gi|219852306|ref|YP_002466738.1| - 1.3 9.2 8.5 3 8.0 0.2 3.8 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) Myosin_tail_1 PF01576.14 gi|219852306|ref|YP_002466738.1| - 1.9 6.1 11.4 0.59 7.7 3.6 2.6 1 1 0 2 2 2 0 Myosin tail HAUS-augmin3 PF14932.1 gi|219852306|ref|YP_002466738.1| - 3.7 6.6 11.6 8.1 5.5 1.9 3.5 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 CheW PF01584.14 gi|219852307|ref|YP_002466739.1| - 4e-28 97.6 1.0 4.7e-28 97.3 0.7 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.19 gi|219852308|ref|YP_002466740.1| - 4.4e-21 74.9 0.0 1.1e-20 73.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219852308|ref|YP_002466740.1| - 7.4e-15 55.2 0.0 3.5e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219852308|ref|YP_002466740.1| - 1.5e-13 50.5 0.0 1.5e-06 27.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|219852308|ref|YP_002466740.1| - 7.7e-12 45.9 0.0 2.7e-11 44.1 0.0 2.0 3 0 0 3 3 2 1 GAF domain PAS_4 PF08448.5 gi|219852308|ref|YP_002466740.1| - 2e-08 34.2 0.0 0.00078 19.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|219852308|ref|YP_002466740.1| - 9.9e-05 22.3 0.0 0.0015 18.6 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|219852308|ref|YP_002466740.1| - 0.00011 21.9 0.1 0.00038 20.2 0.0 2.0 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|219852308|ref|YP_002466740.1| - 0.00026 21.1 0.0 0.0027 17.8 0.0 2.5 3 0 0 3 3 3 1 GAF domain GAF PF01590.21 gi|219852308|ref|YP_002466740.1| - 0.00039 20.5 0.0 0.00073 19.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|219852308|ref|YP_002466740.1| - 0.0011 18.9 0.1 0.0048 16.8 0.0 2.1 2 0 0 2 2 2 1 PAS fold APG5 PF04106.7 gi|219852308|ref|YP_002466740.1| - 0.078 12.4 0.1 0.27 10.6 0.0 1.9 1 1 1 2 2 2 0 Autophagy protein Apg5 MCPsignal PF00015.16 gi|219852309|ref|YP_002466741.1| - 3.2e-46 157.5 53.2 6.1e-46 156.6 18.8 4.4 4 1 1 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219852309|ref|YP_002466741.1| - 1.3e-11 44.5 0.0 3.4e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|219852309|ref|YP_002466741.1| - 3e-09 37.1 0.0 1.1e-08 35.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219852309|ref|YP_002466741.1| - 1.4e-07 31.2 0.0 2.2e-06 27.4 0.0 2.7 2 0 0 2 2 2 1 PAS fold HAMP PF00672.20 gi|219852309|ref|YP_002466741.1| - 5.8e-06 26.3 21.5 11 6.2 0.1 12.5 13 2 1 14 14 14 2 HAMP domain BRI3BP PF14965.1 gi|219852309|ref|YP_002466741.1| - 0.0028 17.0 0.0 24 4.2 0.0 4.2 4 0 0 4 4 4 0 Negative regulator of p53/TP53 PAS_10 PF13596.1 gi|219852309|ref|YP_002466741.1| - 0.0037 17.4 0.0 0.041 14.1 0.0 2.8 3 0 0 3 3 3 1 PAS domain Synaptonemal_3 PF15191.1 gi|219852309|ref|YP_002466741.1| - 0.0074 16.0 0.1 15 5.3 0.0 4.1 3 0 0 3 3 3 0 Synaptonemal complex central element protein 3 PAS_8 PF13188.1 gi|219852309|ref|YP_002466741.1| - 0.0089 15.8 0.0 0.089 12.6 0.0 2.5 2 0 0 2 2 2 1 PAS domain Tweety PF04906.8 gi|219852309|ref|YP_002466741.1| - 2.1 6.6 7.5 0.95 7.8 0.3 3.4 4 0 0 4 4 4 0 Tweety UPF0104 PF03706.8 gi|219852310|ref|YP_002466742.1| - 1.4e-35 122.9 30.7 1.4e-35 122.9 21.3 1.2 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) MttA_Hcf106 PF02416.11 gi|219852310|ref|YP_002466742.1| - 0.38 9.8 2.1 4.3 6.5 0.2 3.2 3 0 0 3 3 3 0 mttA/Hcf106 family H_PPase PF03030.11 gi|219852311|ref|YP_002466743.1| - 1.3e-256 853.1 47.8 1.5e-256 852.9 33.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase K_trans PF02705.11 gi|219852312|ref|YP_002466744.1| - 8.5e-159 529.3 43.4 9.7e-159 529.1 30.1 1.0 1 0 0 1 1 1 1 K+ potassium transporter PfkB PF00294.19 gi|219852313|ref|YP_002466745.1| - 5.4e-46 157.0 0.0 6.3e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|219852313|ref|YP_002466745.1| - 5.7e-06 25.6 0.0 8.8e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TP_methylase PF00590.15 gi|219852314|ref|YP_002466746.1| - 4.8e-22 78.6 1.3 1.2e-21 77.3 0.9 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|219852315|ref|YP_002466747.1| - 1.2e-44 152.2 0.4 1.7e-44 151.8 0.2 1.1 1 0 0 1 1 1 1 CbiD CbiC PF02570.10 gi|219852316|ref|YP_002466748.1| - 2.5e-62 209.8 1.5 2.9e-62 209.6 1.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|219852317|ref|YP_002466749.1| - 5.5e-36 124.2 0.5 6.3e-36 124.0 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DAGK_cat PF00781.19 gi|219852317|ref|YP_002466749.1| - 0.0027 17.1 0.1 0.08 12.3 0.0 2.1 2 0 0 2 2 2 2 Diacylglycerol kinase catalytic domain CbiG_N PF11760.3 gi|219852318|ref|YP_002466750.1| - 2.4e-29 100.8 0.3 5.8e-29 99.6 0.1 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|219852318|ref|YP_002466750.1| - 1.7e-27 96.0 0.0 3.3e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus HEM4 PF02602.10 gi|219852318|ref|YP_002466750.1| - 0.056 12.6 0.1 0.42 9.8 0.0 2.2 2 1 0 2 2 2 0 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|219852319|ref|YP_002466751.1| - 1.2e-47 162.3 1.8 1.4e-47 162.1 1.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|219852319|ref|YP_002466751.1| - 0.0023 18.0 0.0 0.0053 16.9 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.15 gi|219852320|ref|YP_002466752.1| - 1.1e-30 106.9 0.1 2.2e-30 105.9 0.1 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|219852321|ref|YP_002466753.1| - 5.6e-15 55.8 0.2 6.6e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852321|ref|YP_002466753.1| - 8.4e-14 51.4 0.2 1.2e-13 50.9 0.2 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852321|ref|YP_002466753.1| - 7.9e-09 35.8 0.2 1.3e-08 35.1 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852321|ref|YP_002466753.1| - 1.7e-08 34.4 0.3 2.1e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852321|ref|YP_002466753.1| - 1.3e-07 32.0 0.2 2.5e-07 31.0 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219852321|ref|YP_002466753.1| - 1.5e-07 30.9 0.3 2.8e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|219852321|ref|YP_002466753.1| - 2.4e-07 30.0 0.0 3.5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|219852321|ref|YP_002466753.1| - 8.5e-07 28.3 0.2 1.4e-06 27.6 0.1 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|219852321|ref|YP_002466753.1| - 1.2e-05 24.6 2.0 1.4e-05 24.3 1.3 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|219852321|ref|YP_002466753.1| - 2.7e-05 23.4 0.0 3.8e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|219852321|ref|YP_002466753.1| - 2.7e-05 23.8 0.1 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|219852321|ref|YP_002466753.1| - 0.00012 22.8 0.1 0.00024 21.8 0.0 1.5 1 1 1 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852321|ref|YP_002466753.1| - 0.00054 20.3 0.0 0.00071 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|219852321|ref|YP_002466753.1| - 0.00065 18.8 0.1 0.00092 18.3 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|219852321|ref|YP_002466753.1| - 0.00098 18.8 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|219852321|ref|YP_002466753.1| - 0.0037 16.9 0.1 0.0057 16.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|219852321|ref|YP_002466753.1| - 0.0039 16.3 0.0 0.0062 15.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|219852321|ref|YP_002466753.1| - 0.0039 16.7 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|219852321|ref|YP_002466753.1| - 0.014 14.9 0.1 0.017 14.6 0.1 1.2 1 0 0 1 1 1 0 Met-10+ like-protein GidB PF02527.10 gi|219852321|ref|YP_002466753.1| - 0.02 14.0 0.1 0.025 13.7 0.1 1.1 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G UPF0020 PF01170.13 gi|219852321|ref|YP_002466753.1| - 0.026 14.0 0.3 0.046 13.2 0.2 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DOT1 PF08123.8 gi|219852321|ref|YP_002466753.1| - 0.034 13.4 0.1 0.051 12.8 0.1 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 CBS PF00571.23 gi|219852321|ref|YP_002466753.1| - 0.043 13.6 0.0 1.8 8.4 0.0 2.3 1 1 1 2 2 2 0 CBS domain N6_N4_Mtase PF01555.13 gi|219852321|ref|YP_002466753.1| - 0.067 12.6 0.1 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA methylase ADH_zinc_N PF00107.21 gi|219852321|ref|YP_002466753.1| - 0.068 12.7 1.7 0.12 11.9 1.2 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase RrnaAD PF00398.15 gi|219852321|ref|YP_002466753.1| - 0.072 12.1 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|219852321|ref|YP_002466753.1| - 0.13 10.9 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TP_methylase PF00590.15 gi|219852322|ref|YP_002466754.1| - 1.6e-45 155.4 0.1 1.9e-45 155.1 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|219852322|ref|YP_002466754.1| - 0.015 15.5 0.0 0.035 14.2 0.0 1.8 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.15 gi|219852323|ref|YP_002466755.1| - 7.3e-61 204.8 0.0 9.7e-61 204.4 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|219852323|ref|YP_002466755.1| - 6.3e-09 35.8 0.1 1.3e-08 34.7 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|219852324|ref|YP_002466756.1| - 3.3e-60 203.7 0.0 4.6e-60 203.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.16 gi|219852325|ref|YP_002466757.1| - 4.9e-123 410.1 0.0 5.4e-123 410.0 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.10 gi|219852326|ref|YP_002466758.1| - 4.7e-36 123.6 0.6 1e-35 122.5 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|219852326|ref|YP_002466758.1| - 6.3e-31 107.2 0.0 1.4e-30 106.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|219852326|ref|YP_002466758.1| - 3.9e-14 52.4 2.3 8.9e-14 51.2 1.6 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|219852326|ref|YP_002466758.1| - 0.0013 17.9 0.1 0.0024 17.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|219852326|ref|YP_002466758.1| - 0.0013 19.1 0.1 0.0035 17.7 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|219852326|ref|YP_002466758.1| - 0.0082 16.3 0.1 0.025 14.8 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|219852326|ref|YP_002466758.1| - 0.0094 14.9 0.2 0.014 14.4 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|219852327|ref|YP_002466759.1| - 9.9e-18 64.3 0.0 1.6e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|219852327|ref|YP_002466759.1| - 0.00038 19.3 0.0 0.0012 17.7 0.0 1.8 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CBS PF00571.23 gi|219852328|ref|YP_002466760.1| - 1.5e-21 75.9 0.8 9.3e-10 38.1 0.2 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|219852328|ref|YP_002466760.1| - 1.5e-15 56.7 0.6 3.2e-15 55.6 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|219852328|ref|YP_002466760.1| - 1.5e-11 44.2 0.1 2.9e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|219852328|ref|YP_002466760.1| - 2.3e-11 43.5 0.1 5.8e-11 42.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219852328|ref|YP_002466760.1| - 1.4e-06 28.3 0.1 5.4e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|219852328|ref|YP_002466760.1| - 0.00089 19.0 0.3 0.0029 17.3 0.2 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|219852328|ref|YP_002466760.1| - 0.0018 17.8 0.3 0.0042 16.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|219852328|ref|YP_002466760.1| - 0.015 15.0 0.1 0.12 12.1 0.0 2.4 3 0 0 3 3 3 0 MarR family Sigma70_r4 PF04545.11 gi|219852328|ref|YP_002466760.1| - 0.019 14.2 0.1 0.058 12.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|219852328|ref|YP_002466760.1| - 0.032 13.9 0.1 0.11 12.2 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|219852328|ref|YP_002466760.1| - 0.036 13.4 0.1 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_6 PF01418.12 gi|219852328|ref|YP_002466760.1| - 0.059 13.1 0.3 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family LacI PF00356.16 gi|219852328|ref|YP_002466760.1| - 0.29 10.7 1.3 7 6.3 0.1 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family TIM PF00121.13 gi|219852329|ref|YP_002466761.1| - 3.2e-31 108.2 0.2 3.6e-29 101.5 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|219852329|ref|YP_002466761.1| - 0.007 15.4 0.5 0.007 15.4 0.3 1.9 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|219852329|ref|YP_002466761.1| - 0.0091 15.2 0.1 1.3 8.1 0.1 2.4 2 0 0 2 2 2 2 Histidine biosynthesis protein DUF4031 PF13223.1 gi|219852329|ref|YP_002466761.1| - 0.075 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) Peptidase_U32 PF01136.14 gi|219852330|ref|YP_002466762.1| - 9.9e-90 299.5 0.0 1.2e-74 250.1 0.0 2.9 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|219852330|ref|YP_002466762.1| - 2.1e-21 76.2 0.0 4.2e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 Collagenase DUF167 PF02594.11 gi|219852331|ref|YP_002466763.1| - 1.8e-18 66.2 0.0 2.1e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Amidohydro_4 PF13147.1 gi|219852332|ref|YP_002466764.1| - 6.1e-18 65.8 10.3 9.6e-18 65.1 7.1 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|219852332|ref|YP_002466764.1| - 2e-10 40.8 0.0 1.1e-09 38.4 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|219852332|ref|YP_002466764.1| - 5.4e-09 35.7 0.5 1.8e-08 34.0 0.4 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|219852332|ref|YP_002466764.1| - 0.0093 15.2 4.5 0.21 10.7 0.1 2.6 1 1 2 3 3 3 2 Amidohydrolase family Prolactin_RP PF15172.1 gi|219852332|ref|YP_002466764.1| - 0.046 12.9 0.5 0.095 11.9 0.4 1.5 1 0 0 1 1 1 0 Prolactin-releasing peptide AIRS_C PF02769.17 gi|219852333|ref|YP_002466765.1| - 1e-27 97.0 1.4 1.9e-27 96.1 1.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|219852333|ref|YP_002466765.1| - 2.7e-18 66.0 2.6 3.6e-18 65.5 0.5 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain HypA PF01155.14 gi|219852334|ref|YP_002466766.1| - 2.5e-23 81.8 0.1 2.9e-23 81.7 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family NRDD PF13597.1 gi|219852334|ref|YP_002466766.1| - 0.043 11.8 0.1 0.048 11.7 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF1610 PF07754.6 gi|219852334|ref|YP_002466766.1| - 4.3 7.5 7.2 0.29 11.2 1.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HupF_HypC PF01455.13 gi|219852335|ref|YP_002466767.1| - 5.2e-23 80.8 0.2 6.1e-23 80.6 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family Condensation PF00668.15 gi|219852337|ref|YP_002466769.1| - 2.1e-10 39.9 0.0 4.6e-09 35.5 0.0 2.1 1 1 0 1 1 1 1 Condensation domain DNA_pol_B PF00136.16 gi|219852338|ref|YP_002466770.1| - 2.3e-62 211.3 0.0 3.1e-62 210.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|219852338|ref|YP_002466770.1| - 5e-31 107.7 0.0 2.9e-30 105.2 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|219852338|ref|YP_002466770.1| - 0.0014 18.4 0.0 0.019 14.7 0.0 2.9 2 1 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|219852338|ref|YP_002466770.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Ldh_1_N PF00056.18 gi|219852339|ref|YP_002466771.1| - 2.8e-14 53.1 0.0 3.7e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|219852339|ref|YP_002466771.1| - 2.8e-14 53.2 0.0 3.9e-13 49.4 0.0 2.4 2 1 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DHO_dh PF01180.16 gi|219852340|ref|YP_002466772.1| - 5.1e-54 183.2 0.0 6.3e-54 182.9 0.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|219852340|ref|YP_002466772.1| - 1.4e-09 37.2 0.0 0.00042 19.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|219852340|ref|YP_002466772.1| - 1.4e-07 31.0 0.2 1.4e-07 31.0 0.2 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|219852340|ref|YP_002466772.1| - 1.6e-05 24.3 0.0 4.1e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|219852340|ref|YP_002466772.1| - 0.0017 17.2 0.4 0.0024 16.8 0.3 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|219852340|ref|YP_002466772.1| - 0.0082 15.1 0.2 0.013 14.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF561) FMN_dh PF01070.13 gi|219852340|ref|YP_002466772.1| - 0.02 13.7 0.3 0.03 13.1 0.2 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase ThiG PF05690.9 gi|219852340|ref|YP_002466772.1| - 0.059 12.4 0.2 0.096 11.7 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|219852340|ref|YP_002466772.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHODB_Fe-S_bind PF10418.4 gi|219852341|ref|YP_002466773.1| - 2.8e-12 45.9 12.2 2.4e-11 42.9 6.7 2.3 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|219852341|ref|YP_002466773.1| - 8.4e-10 39.1 0.0 1.3e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|219852341|ref|YP_002466773.1| - 6.5e-06 26.1 0.0 1.4e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain N6-adenineMlase PF10237.4 gi|219852341|ref|YP_002466773.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Fer2_3 PF13085.1 gi|219852341|ref|YP_002466773.1| - 0.2 11.5 1.1 0.37 10.6 0.8 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain AdoMet_Synthase PF01941.14 gi|219852342|ref|YP_002466774.1| - 2.4e-174 579.4 0.2 2.8e-174 579.2 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.13 gi|219852343|ref|YP_002466775.1| - 5.7e-49 165.8 0.2 8.9e-49 165.1 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|219852343|ref|YP_002466775.1| - 1.2e-25 89.1 0.2 3e-25 87.9 0.2 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|219852343|ref|YP_002466775.1| - 6e-05 22.7 0.0 0.02 14.4 0.0 2.6 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|219852343|ref|YP_002466775.1| - 0.00052 19.3 0.0 0.00095 18.4 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF881 PF05949.7 gi|219852343|ref|YP_002466775.1| - 0.052 12.9 0.3 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF881) His_biosynth PF00977.16 gi|219852344|ref|YP_002466776.1| - 3.5e-66 222.7 0.5 3.9e-66 222.6 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|219852344|ref|YP_002466776.1| - 8.2e-08 31.4 0.1 0.0017 17.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|219852344|ref|YP_002466776.1| - 3.3e-06 26.5 0.7 0.00043 19.6 0.0 2.1 2 0 0 2 2 2 2 PcrB family ThiG PF05690.9 gi|219852344|ref|YP_002466776.1| - 1.1e-05 24.6 2.0 0.015 14.3 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|219852344|ref|YP_002466776.1| - 0.00036 19.5 0.2 0.5 9.3 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|219852344|ref|YP_002466776.1| - 0.0031 16.6 0.9 0.025 13.6 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|219852344|ref|YP_002466776.1| - 0.0061 15.6 0.2 0.24 10.4 0.0 2.2 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|219852344|ref|YP_002466776.1| - 0.0094 15.1 0.3 0.0094 15.1 0.2 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|219852344|ref|YP_002466776.1| - 0.013 14.5 1.8 0.15 11.0 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|219852344|ref|YP_002466776.1| - 0.16 10.8 2.2 1 8.1 0.2 2.0 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPD PF00475.13 gi|219852345|ref|YP_002466777.1| - 4.8e-63 211.3 0.5 5.8e-63 211.0 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase CBFD_NFYB_HMF PF00808.18 gi|219852346|ref|YP_002466778.1| - 4.8e-16 58.5 0.7 5.3e-16 58.4 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|219852346|ref|YP_002466778.1| - 3.1e-14 52.8 0.3 3.8e-14 52.5 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|219852346|ref|YP_002466778.1| - 1.6e-06 28.1 0.0 1.6e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|219852346|ref|YP_002466778.1| - 5.7e-05 22.7 0.0 6.1e-05 22.6 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T PF15511.1 gi|219852346|ref|YP_002466778.1| - 0.00011 21.6 0.1 0.00011 21.5 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|219852346|ref|YP_002466778.1| - 0.00055 19.8 0.6 0.00057 19.7 0.4 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|219852346|ref|YP_002466778.1| - 0.0018 18.0 0.1 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.8 gi|219852346|ref|YP_002466778.1| - 0.0063 16.7 0.0 0.0067 16.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|219852346|ref|YP_002466778.1| - 0.0069 16.1 0.0 0.0095 15.7 0.0 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.1 gi|219852346|ref|YP_002466778.1| - 0.016 13.9 1.0 0.013 14.1 0.7 1.0 1 0 0 1 1 1 0 AAA domain PCP_red PF08369.5 gi|219852346|ref|YP_002466778.1| - 0.053 13.4 2.9 0.14 12.0 0.2 2.2 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF1192 PF06698.6 gi|219852346|ref|YP_002466778.1| - 0.1 12.3 0.9 0.22 11.3 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) AIRS PF00586.19 gi|219852348|ref|YP_002466780.1| - 9.4e-21 73.8 0.1 2.6e-20 72.4 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|219852348|ref|YP_002466780.1| - 4e-15 56.1 0.0 6.8e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AAA PF00004.24 gi|219852349|ref|YP_002466781.1| - 9e-12 45.3 0.0 4.1e-11 43.2 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|219852349|ref|YP_002466781.1| - 7e-06 26.2 1.7 0.00068 19.7 0.1 3.4 3 2 1 4 4 4 1 AAA domain Rad17 PF03215.10 gi|219852349|ref|YP_002466781.1| - 0.00014 20.6 0.0 0.081 11.5 0.0 2.4 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|219852349|ref|YP_002466781.1| - 0.00029 19.9 0.0 0.00075 18.6 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|219852349|ref|YP_002466781.1| - 0.0027 17.7 0.0 0.0081 16.2 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|219852349|ref|YP_002466781.1| - 0.0054 17.5 0.1 0.021 15.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|219852349|ref|YP_002466781.1| - 0.0058 16.0 0.1 0.025 14.0 0.0 2.2 3 0 0 3 3 3 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|219852349|ref|YP_002466781.1| - 0.0068 15.8 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain RFC1 PF08519.7 gi|219852349|ref|YP_002466781.1| - 0.0077 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_24 PF13479.1 gi|219852349|ref|YP_002466781.1| - 0.0091 15.5 0.1 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|219852349|ref|YP_002466781.1| - 0.022 14.6 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|219852349|ref|YP_002466781.1| - 0.025 13.6 0.0 0.062 12.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|219852349|ref|YP_002466781.1| - 0.028 14.5 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|219852349|ref|YP_002466781.1| - 0.04 13.8 0.7 0.22 11.4 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|219852349|ref|YP_002466781.1| - 0.05 12.9 0.0 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|219852349|ref|YP_002466781.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DNA_pol3_delta2 PF13177.1 gi|219852349|ref|YP_002466781.1| - 0.096 12.3 0.1 25 4.4 0.0 3.3 4 0 0 4 4 4 0 DNA polymerase III, delta subunit AAA_11 PF13086.1 gi|219852349|ref|YP_002466781.1| - 0.19 11.2 2.0 1.2 8.7 1.4 2.2 1 1 0 1 1 1 0 AAA domain UPF0146 PF03686.8 gi|219852350|ref|YP_002466782.1| - 3.7e-21 75.2 0.0 4.5e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.6 gi|219852351|ref|YP_002466783.1| - 5.9e-22 78.3 0.0 6.5e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|219852351|ref|YP_002466783.1| - 0.00037 20.2 0.0 0.0005 19.8 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.8 gi|219852351|ref|YP_002466783.1| - 0.001 18.6 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.1 gi|219852351|ref|YP_002466783.1| - 0.0029 18.1 0.0 0.0034 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|219852351|ref|YP_002466783.1| - 0.0054 16.2 0.0 0.0069 15.9 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|219852351|ref|YP_002466783.1| - 0.0088 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|219852351|ref|YP_002466783.1| - 0.051 13.4 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 AMP-binding PF00501.23 gi|219852352|ref|YP_002466784.1| - 1.6e-19 69.6 0.0 2.2e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Response_reg PF00072.19 gi|219852353|ref|YP_002466785.1| - 1.9e-20 72.9 0.0 4e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219852353|ref|YP_002466785.1| - 1.3e-19 70.4 0.5 3.8e-08 33.6 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|219852353|ref|YP_002466785.1| - 4.3e-14 52.3 0.2 1.6e-05 24.8 0.0 2.8 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|219852353|ref|YP_002466785.1| - 9.5e-14 52.1 0.0 2e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|219852353|ref|YP_002466785.1| - 2.7e-13 49.6 0.1 6.5e-13 48.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|219852353|ref|YP_002466785.1| - 2.1e-11 43.8 0.0 2.8e-07 30.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|219852353|ref|YP_002466785.1| - 7.9e-09 35.2 0.1 0.0014 18.3 0.0 3.5 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|219852353|ref|YP_002466785.1| - 5.8e-05 23.2 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219852353|ref|YP_002466785.1| - 0.0005 20.1 0.0 0.0013 18.8 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|219852353|ref|YP_002466785.1| - 0.002 17.8 0.0 2.2 8.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain SPOB_a PF14689.1 gi|219852353|ref|YP_002466785.1| - 0.0046 16.4 0.1 0.016 14.7 0.1 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain zf-CCCH_2 PF14608.1 gi|219852353|ref|YP_002466785.1| - 0.27 11.3 1.5 0.83 9.7 0.3 2.3 2 0 0 2 2 2 0 Zinc finger C-x8-C-x5-C-x3-H type CBM_6 PF03422.10 gi|219852354|ref|YP_002466786.1| - 1.2e-61 206.3 8.0 2.8e-20 72.7 0.1 5.3 4 3 1 5 5 5 3 Carbohydrate binding module (family 6) PEGA PF08308.6 gi|219852354|ref|YP_002466786.1| - 2.7e-16 59.1 0.0 1e-14 54.0 0.0 3.3 4 0 0 4 4 4 1 PEGA domain Peptidase_C1 PF00112.18 gi|219852354|ref|YP_002466786.1| - 1.3e-08 35.0 2.4 1.6e-06 28.1 0.4 2.4 2 0 0 2 2 2 2 Papain family cysteine protease CarboxypepD_reg PF13620.1 gi|219852354|ref|YP_002466786.1| - 4.2e-05 23.5 0.6 0.034 14.2 0.0 4.1 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain Cupin_1 PF00190.17 gi|219852355|ref|YP_002466787.1| - 1.4e-08 34.2 0.0 1.9e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.6 gi|219852355|ref|YP_002466787.1| - 4.4e-08 32.5 0.0 9.2e-08 31.4 0.0 1.5 1 1 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|219852355|ref|YP_002466787.1| - 0.00011 21.9 0.0 0.00012 21.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|219852355|ref|YP_002466787.1| - 0.014 15.0 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain EutQ PF06249.7 gi|219852355|ref|YP_002466787.1| - 0.015 14.8 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.2 gi|219852355|ref|YP_002466787.1| - 0.023 14.3 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Cupin GPI PF06560.6 gi|219852355|ref|YP_002466787.1| - 0.041 12.9 0.0 0.078 11.9 0.0 1.4 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) CENP-C_C PF11699.3 gi|219852355|ref|YP_002466787.1| - 0.074 13.0 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like ABC_tran PF00005.22 gi|219852357|ref|YP_002466789.1| - 7.5e-27 94.3 0.0 1.1e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852357|ref|YP_002466789.1| - 9.2e-12 45.5 0.0 7.1e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219852357|ref|YP_002466789.1| - 5.2e-10 38.9 0.0 5.8e-08 32.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219852357|ref|YP_002466789.1| - 9.1e-07 28.2 0.0 0.024 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|219852357|ref|YP_002466789.1| - 7.3e-05 22.2 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219852357|ref|YP_002466789.1| - 0.00046 19.4 0.0 0.00074 18.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|219852357|ref|YP_002466789.1| - 0.00048 20.1 0.0 0.0012 18.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|219852357|ref|YP_002466789.1| - 0.0019 18.5 0.0 0.55 10.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|219852357|ref|YP_002466789.1| - 0.0019 18.5 0.0 0.0029 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|219852357|ref|YP_002466789.1| - 0.0025 16.3 0.0 0.24 9.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|219852357|ref|YP_002466789.1| - 0.0037 17.4 0.1 0.019 15.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219852357|ref|YP_002466789.1| - 0.0053 16.7 0.0 0.0091 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|219852357|ref|YP_002466789.1| - 0.0084 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|219852357|ref|YP_002466789.1| - 0.01 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|219852357|ref|YP_002466789.1| - 0.021 15.3 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|219852357|ref|YP_002466789.1| - 0.034 12.9 0.0 0.062 12.0 0.0 1.4 1 0 0 1 1 1 0 ArgK protein MobB PF03205.9 gi|219852357|ref|YP_002466789.1| - 0.049 13.3 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|219852357|ref|YP_002466789.1| - 0.064 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|219852357|ref|YP_002466789.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|219852357|ref|YP_002466789.1| - 0.13 13.0 0.0 0.33 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF4010 PF13194.1 gi|219852358|ref|YP_002466790.1| - 0.013 14.7 0.4 0.016 14.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) DUF1129 PF06570.6 gi|219852358|ref|YP_002466790.1| - 0.043 13.1 2.8 0.06 12.6 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Na_Ca_ex PF01699.19 gi|219852358|ref|YP_002466790.1| - 0.045 13.3 8.1 0.054 13.0 5.6 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein DUF3595 PF12166.3 gi|219852358|ref|YP_002466790.1| - 0.08 11.7 0.5 0.096 11.4 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3595) TMC PF07810.8 gi|219852358|ref|YP_002466790.1| - 0.2 12.0 1.0 0.24 11.8 0.7 1.2 1 0 0 1 1 1 0 TMC domain SdpI PF13630.1 gi|219852358|ref|YP_002466790.1| - 0.27 10.9 12.9 0.026 14.2 2.6 2.1 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF373 PF04123.8 gi|219852358|ref|YP_002466790.1| - 7.4 5.4 10.5 1.1 8.2 3.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF373) AAL_decarboxy PF03306.8 gi|219852359|ref|YP_002466791.1| - 3.5e-86 287.8 0.0 4.1e-86 287.5 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase SNARE_assoc PF09335.6 gi|219852360|ref|YP_002466792.1| - 0.0039 17.3 0.2 0.0052 16.9 0.1 1.2 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF4063 PF13272.1 gi|219852360|ref|YP_002466792.1| - 0.0053 16.5 0.2 0.0065 16.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4063) GtrA PF04138.9 gi|219852360|ref|YP_002466792.1| - 0.034 14.1 0.3 0.041 13.8 0.2 1.1 1 0 0 1 1 1 0 GtrA-like protein FA_desaturase PF00487.19 gi|219852360|ref|YP_002466792.1| - 0.041 13.3 0.5 0.047 13.1 0.3 1.1 1 0 0 1 1 1 0 Fatty acid desaturase RRN7 PF11781.3 gi|219852360|ref|YP_002466792.1| - 0.13 11.7 4.2 0.34 10.4 0.5 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DNA_RNApol_7kD PF03604.8 gi|219852360|ref|YP_002466792.1| - 0.37 10.2 3.2 0.66 9.4 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Acetyltransf_7 PF13508.1 gi|219852361|ref|YP_002466793.1| - 3.5e-06 27.0 0.3 9e-06 25.7 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|219852361|ref|YP_002466793.1| - 0.0001 22.2 0.1 0.00024 21.0 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PKD PF00801.15 gi|219852362|ref|YP_002466794.1| - 8.3e-59 195.2 65.5 1e-14 54.0 2.7 7.0 7 0 0 7 7 7 5 PKD domain Beta_helix PF13229.1 gi|219852362|ref|YP_002466794.1| - 8.4e-06 25.6 21.2 0.00015 21.5 2.6 4.0 2 1 2 4 4 4 3 Right handed beta helix region EF-hand_1 PF00036.27 gi|219852362|ref|YP_002466794.1| - 2.7e-05 23.1 2.9 0.027 13.7 0.1 2.7 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.1 gi|219852362|ref|YP_002466794.1| - 0.00034 20.2 0.8 0.18 11.7 0.1 2.8 2 0 0 2 2 2 2 EF-hand domain EF-hand_8 PF13833.1 gi|219852362|ref|YP_002466794.1| - 0.047 13.3 3.5 0.19 11.4 0.1 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.1 gi|219852362|ref|YP_002466794.1| - 0.06 13.5 1.9 3.2 7.9 0.1 2.4 1 1 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219852362|ref|YP_002466794.1| - 0.28 10.5 4.7 1.5 8.3 0.1 3.0 2 0 0 2 2 2 0 EF hand DUF4468 PF14730.1 gi|219852363|ref|YP_002466795.1| - 0.044 13.4 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold DUF3382 PF11862.3 gi|219852363|ref|YP_002466795.1| - 0.078 12.8 0.2 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) DUF4381 PF14316.1 gi|219852364|ref|YP_002466796.1| - 0.011 15.8 0.0 0.011 15.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) YwiC PF14256.1 gi|219852364|ref|YP_002466796.1| - 0.011 15.8 1.4 0.013 15.6 1.0 1.2 1 0 0 1 1 1 0 YwiC-like protein Orthoreo_P10 PF07204.6 gi|219852364|ref|YP_002466796.1| - 0.064 13.0 0.2 0.086 12.5 0.2 1.2 1 1 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 BIV_Env PF05858.7 gi|219852364|ref|YP_002466796.1| - 0.24 9.3 3.5 0.25 9.2 2.5 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) DUF3139 PF11337.3 gi|219852364|ref|YP_002466796.1| - 0.35 11.1 0.2 0.35 11.1 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF2628 PF10947.3 gi|219852364|ref|YP_002466796.1| - 0.36 10.6 4.1 0.42 10.4 2.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2207 PF09972.4 gi|219852364|ref|YP_002466796.1| - 0.37 9.3 2.3 0.47 8.9 1.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3784 PF12650.2 gi|219852364|ref|YP_002466796.1| - 0.72 9.8 6.7 1 9.3 4.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Sigma_reg_N PF13800.1 gi|219852364|ref|YP_002466796.1| - 1.2 9.2 4.3 0.3 11.1 0.4 1.7 1 1 1 2 2 2 0 Sigma factor regulator N-terminal YajC PF02699.10 gi|219852364|ref|YP_002466796.1| - 1.4 8.6 5.2 5.1 6.8 3.6 1.8 1 1 0 1 1 1 0 Preprotein translocase subunit CheR PF01739.13 gi|219852365|ref|YP_002466797.1| - 1.5e-55 187.5 0.0 2.1e-55 187.0 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|219852365|ref|YP_002466797.1| - 8.2e-15 53.9 0.4 1.8e-14 52.8 0.3 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|219852365|ref|YP_002466797.1| - 0.0039 17.6 0.0 0.011 16.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain tRNA-synt_1e PF01406.14 gi|219852365|ref|YP_002466797.1| - 0.032 13.3 0.0 0.054 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain CheW PF01584.14 gi|219852366|ref|YP_002466798.1| - 8.7e-26 90.0 1.5 8.7e-26 90.0 1.1 2.9 3 0 0 3 3 3 1 CheW-like domain PAS_9 PF13426.1 gi|219852366|ref|YP_002466798.1| - 4.9e-22 78.2 0.0 5.3e-07 29.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|219852366|ref|YP_002466798.1| - 1.1e-21 76.6 0.5 2.5e-06 27.2 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|219852366|ref|YP_002466798.1| - 1.9e-20 71.9 1.8 4.8e-07 29.4 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|219852366|ref|YP_002466798.1| - 1.7e-19 69.9 0.0 7.8e-07 29.1 0.0 3.8 3 0 0 3 3 3 3 PAS fold DUF848 PF05852.6 gi|219852366|ref|YP_002466798.1| - 0.00015 21.6 1.9 0.038 13.8 0.0 3.0 3 0 0 3 3 3 2 Gammaherpesvirus protein of unknown function (DUF848) PAS_3 PF08447.6 gi|219852366|ref|YP_002466798.1| - 0.018 15.1 0.0 7.3 6.7 0.0 3.2 3 0 0 3 3 3 0 PAS fold HAMP PF00672.20 gi|219852366|ref|YP_002466798.1| - 0.047 13.8 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 HAMP domain MCPsignal PF00015.16 gi|219852367|ref|YP_002466799.1| - 1.3e-53 181.7 45.0 7.6e-50 169.4 18.9 3.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|219852367|ref|YP_002466799.1| - 2.6e-24 85.6 0.1 9.7e-07 29.1 0.0 4.2 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|219852367|ref|YP_002466799.1| - 1.4e-22 79.8 0.0 1.4e-07 31.5 0.0 3.9 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|219852367|ref|YP_002466799.1| - 1.7e-16 59.9 0.4 1.5e-05 24.7 0.0 4.0 3 0 0 3 3 3 3 PAS fold CHIPS PF11434.3 gi|219852367|ref|YP_002466799.1| - 4.5e-14 51.8 0.6 0.061 12.9 0.0 5.6 5 0 0 5 5 5 4 Chemotaxis-inhibiting protein CHIPS PAS_8 PF13188.1 gi|219852367|ref|YP_002466799.1| - 1.9e-09 37.0 0.0 0.00087 19.0 0.0 3.9 3 0 0 3 3 3 2 PAS domain Prok_Ub PF14454.1 gi|219852367|ref|YP_002466799.1| - 0.00018 21.1 0.0 45 3.8 0.0 4.9 4 0 0 4 4 4 0 Prokaryotic Ubiquitin CcdA PF07362.7 gi|219852367|ref|YP_002466799.1| - 0.00018 21.2 4.2 16 5.4 0.0 6.2 6 0 0 6 6 6 0 Post-segregation antitoxin CcdA Spc7 PF08317.6 gi|219852367|ref|YP_002466799.1| - 0.0014 17.3 7.4 0.0014 17.3 5.1 4.1 2 1 2 4 4 4 1 Spc7 kinetochore protein VIT1 PF01988.14 gi|219852367|ref|YP_002466799.1| - 0.0045 16.4 14.5 1.4 8.3 0.1 4.6 5 0 0 5 5 4 3 VIT family PAS_7 PF12860.2 gi|219852367|ref|YP_002466799.1| - 0.014 15.3 9.7 9 6.3 0.3 6.2 4 3 0 4 4 4 0 PAS fold ubiquitin PF00240.18 gi|219852367|ref|YP_002466799.1| - 0.016 14.5 0.5 0.11 11.8 0.1 2.7 2 0 0 2 2 2 0 Ubiquitin family Rib PF08428.5 gi|219852367|ref|YP_002466799.1| - 0.077 12.7 6.9 23 4.8 0.1 4.0 4 0 0 4 4 4 0 Rib/alpha-like repeat TMP_2 PF06791.8 gi|219852367|ref|YP_002466799.1| - 0.63 9.6 21.2 0.53 9.8 4.8 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein CbiA PF01656.18 gi|219852368|ref|YP_002466800.1| - 6.4e-31 107.2 0.0 1e-30 106.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|219852368|ref|YP_002466800.1| - 9.2e-12 44.7 0.4 8.2e-08 31.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|219852368|ref|YP_002466800.1| - 2.2e-08 33.5 0.2 1.8e-05 23.9 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|219852368|ref|YP_002466800.1| - 2.7e-07 30.6 0.0 6.2e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|219852368|ref|YP_002466800.1| - 2.5e-06 26.7 0.5 0.00017 20.7 0.1 2.2 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.10 gi|219852368|ref|YP_002466800.1| - 3.7e-05 22.9 0.9 0.00016 20.8 0.3 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|219852368|ref|YP_002466800.1| - 0.00056 19.3 0.0 0.13 11.5 0.0 2.2 2 0 0 2 2 2 2 YhjQ protein AAA_19 PF13245.1 gi|219852368|ref|YP_002466800.1| - 0.0033 17.1 0.1 0.0089 15.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|219852368|ref|YP_002466800.1| - 0.0058 16.0 0.1 0.017 14.6 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain UPF0146 PF03686.8 gi|219852368|ref|YP_002466800.1| - 0.031 14.0 0.0 0.59 9.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) MobB PF03205.9 gi|219852368|ref|YP_002466800.1| - 0.046 13.4 0.1 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|219852368|ref|YP_002466800.1| - 0.1 11.9 0.3 0.3 10.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|219852368|ref|YP_002466800.1| - 0.12 11.1 0.0 0.12 11.1 0.0 2.0 3 0 0 3 3 3 0 ArgK protein Response_reg PF00072.19 gi|219852369|ref|YP_002466801.1| - 2.5e-18 66.1 0.0 3.3e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain MCPsignal PF00015.16 gi|219852370|ref|YP_002466802.1| - 3e-48 164.1 49.6 3.1e-47 160.8 19.3 3.4 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|219852370|ref|YP_002466802.1| - 2e-17 63.4 0.0 1.1e-06 28.9 0.0 4.0 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.19 gi|219852370|ref|YP_002466802.1| - 2.7e-15 56.3 0.0 1e-14 54.4 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|219852370|ref|YP_002466802.1| - 8.4e-12 44.8 0.0 6e-05 22.8 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219852370|ref|YP_002466802.1| - 6.6e-11 42.2 0.0 3.5e-06 27.0 0.0 3.4 3 0 0 3 3 2 2 PAS fold PAS_8 PF13188.1 gi|219852370|ref|YP_002466802.1| - 6.5e-09 35.3 0.0 0.00021 21.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain DUF948 PF06103.6 gi|219852370|ref|YP_002466802.1| - 0.00035 20.3 24.1 0.0021 17.8 1.9 5.8 4 2 2 6 6 6 2 Bacterial protein of unknown function (DUF948) DUF3407 PF11887.3 gi|219852370|ref|YP_002466802.1| - 0.0033 16.7 0.6 0.0033 16.7 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3407) OpuAC PF04069.7 gi|219852370|ref|YP_002466802.1| - 0.013 14.9 0.4 0.048 13.0 0.0 2.2 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system PilJ PF13675.1 gi|219852370|ref|YP_002466802.1| - 0.021 15.1 8.4 0.24 11.7 0.3 4.3 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2347 PF09804.4 gi|219852370|ref|YP_002466802.1| - 0.056 12.7 1.2 0.13 11.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2347) HAMP PF00672.20 gi|219852370|ref|YP_002466802.1| - 0.18 12.0 10.2 0.25 11.5 0.0 3.6 3 1 2 5 5 3 0 HAMP domain Atg14 PF10186.4 gi|219852370|ref|YP_002466802.1| - 0.22 10.4 5.4 0.62 8.9 2.7 2.4 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|219852370|ref|YP_002466802.1| - 0.29 10.8 30.6 0.04 13.6 1.2 5.3 5 1 1 6 6 6 0 Laminin Domain II EspB PF05802.6 gi|219852370|ref|YP_002466802.1| - 0.81 8.5 26.2 0.086 11.7 1.1 3.4 1 1 2 3 3 3 0 Enterobacterial EspB protein AAA_13 PF13166.1 gi|219852370|ref|YP_002466802.1| - 0.89 7.9 16.1 18 3.6 10.8 2.3 1 1 1 2 2 2 0 AAA domain DUF3391 PF11871.3 gi|219852370|ref|YP_002466802.1| - 1.8 8.7 10.8 2 8.6 3.3 3.7 2 2 0 2 2 2 0 Domain of unknown function (DUF3391) NPV_P10 PF05531.7 gi|219852370|ref|YP_002466802.1| - 3.8 7.8 18.1 7.2 6.9 0.3 5.1 4 1 0 4 4 4 0 Nucleopolyhedrovirus P10 protein DASH_Dad4 PF08650.5 gi|219852370|ref|YP_002466802.1| - 4.1 7.3 15.6 17 5.4 0.0 5.1 5 1 0 5 5 5 0 DASH complex subunit Dad4 DUF1664 PF07889.7 gi|219852370|ref|YP_002466802.1| - 5.5 6.8 18.2 0.35 10.6 0.6 4.5 4 2 1 5 5 4 0 Protein of unknown function (DUF1664) Cauli_AT PF03233.8 gi|219852370|ref|YP_002466802.1| - 7.9 6.1 9.5 1.6 8.3 0.0 4.0 3 1 1 4 4 4 0 Aphid transmission protein Response_reg PF00072.19 gi|219852371|ref|YP_002466803.1| - 1.6e-23 82.8 0.3 4.2e-23 81.4 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219852371|ref|YP_002466803.1| - 3.2e-23 81.5 0.0 9e-23 80.1 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219852371|ref|YP_002466803.1| - 7.8e-12 45.0 0.1 1.5e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|219852371|ref|YP_002466803.1| - 0.0037 16.9 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|219852371|ref|YP_002466803.1| - 0.02 14.5 0.0 0.062 13.0 0.0 1.8 1 0 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.1 gi|219852371|ref|YP_002466803.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CheW PF01584.14 gi|219852372|ref|YP_002466804.1| - 2.9e-27 94.8 0.7 3.4e-27 94.6 0.5 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|219852373|ref|YP_002466805.1| - 2.4e-48 164.5 53.5 5.1e-47 160.1 20.3 4.4 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219852373|ref|YP_002466805.1| - 1.1e-19 70.4 0.0 1e-13 51.2 0.0 3.8 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|219852373|ref|YP_002466805.1| - 1.4e-15 57.5 0.1 2.1e-12 47.3 0.0 3.4 2 1 0 2 2 2 1 PAS domain PAS PF00989.19 gi|219852373|ref|YP_002466805.1| - 5.6e-11 42.2 0.0 1.2e-06 28.2 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219852373|ref|YP_002466805.1| - 9.6e-07 28.4 0.0 0.0051 16.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PTRF_SDPR PF15237.1 gi|219852373|ref|YP_002466805.1| - 0.016 14.6 2.2 0.79 9.0 0.0 2.6 2 0 0 2 2 2 0 PTRF/SDPR family Myotub-related PF06602.9 gi|219852373|ref|YP_002466805.1| - 0.035 12.8 2.0 0.3 9.8 0.2 2.2 1 1 1 2 2 2 0 Myotubularin-like phosphatase domain HAMP PF00672.20 gi|219852373|ref|YP_002466805.1| - 0.12 12.6 11.8 38 4.5 0.0 7.0 8 2 0 8 8 8 0 HAMP domain ALIX_LYPXL_bnd PF13949.1 gi|219852373|ref|YP_002466805.1| - 0.17 10.8 4.8 2.5 6.9 1.2 2.5 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Ferritin PF00210.19 gi|219852373|ref|YP_002466805.1| - 0.37 10.5 3.5 0.77 9.5 0.3 2.7 2 0 0 2 2 2 0 Ferritin-like domain Laminin_I PF06008.9 gi|219852373|ref|YP_002466805.1| - 1.2 8.4 21.5 0.55 9.4 0.9 4.3 2 1 3 5 5 5 0 Laminin Domain I APG17 PF04108.7 gi|219852373|ref|YP_002466805.1| - 6.1 5.5 8.3 19 3.8 0.1 2.4 1 1 1 2 2 2 0 Autophagy protein Apg17 Tweety PF04906.8 gi|219852373|ref|YP_002466805.1| - 7.3 4.8 9.5 1.7 6.9 0.7 3.0 3 0 0 3 3 3 0 Tweety DUF948 PF06103.6 gi|219852373|ref|YP_002466805.1| - 10 6.0 23.3 1.4 8.8 1.4 5.8 5 2 2 7 7 7 0 Bacterial protein of unknown function (DUF948) PAS_9 PF13426.1 gi|219852374|ref|YP_002466806.1| - 1.4e-23 83.1 0.1 3.8e-12 46.4 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|219852374|ref|YP_002466806.1| - 1.9e-19 69.7 0.0 4.2e-11 42.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|219852374|ref|YP_002466806.1| - 5.1e-15 55.2 0.2 5.1e-07 29.4 0.0 3.0 2 1 0 2 2 2 2 PAS fold HisKA_2 PF07568.7 gi|219852374|ref|YP_002466806.1| - 2.2e-13 49.8 1.2 1.4e-12 47.2 0.1 2.8 2 1 1 3 3 3 1 Histidine kinase HATPase_c PF02518.21 gi|219852374|ref|YP_002466806.1| - 1.1e-09 38.0 0.0 2.9e-09 36.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|219852374|ref|YP_002466806.1| - 4.9e-09 35.7 0.1 0.0029 17.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|219852374|ref|YP_002466806.1| - 2e-05 24.5 0.0 0.00022 21.2 0.0 2.4 2 0 0 2 2 2 1 PAS fold HTH_24 PF13412.1 gi|219852374|ref|YP_002466806.1| - 0.00016 21.0 0.1 0.00055 19.2 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HATPase_c_2 PF13581.1 gi|219852374|ref|YP_002466806.1| - 0.0013 18.5 0.0 0.0034 17.1 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Sec2p PF06428.6 gi|219852374|ref|YP_002466806.1| - 0.0013 18.5 0.4 0.0041 16.9 0.1 2.0 2 0 0 2 2 1 1 GDP/GTP exchange factor Sec2p HTH_IclR PF09339.5 gi|219852374|ref|YP_002466806.1| - 0.0032 17.0 0.0 0.0067 15.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain PAS_7 PF12860.2 gi|219852374|ref|YP_002466806.1| - 0.0043 17.0 0.6 5.3 7.0 0.0 3.8 2 2 0 2 2 2 1 PAS fold TBPIP PF07106.8 gi|219852374|ref|YP_002466806.1| - 0.0055 16.2 2.0 0.46 10.0 0.0 2.4 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_23 PF13384.1 gi|219852374|ref|YP_002466806.1| - 0.021 14.4 0.0 0.063 12.9 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Sigma54_DBD PF04552.8 gi|219852374|ref|YP_002466806.1| - 0.11 11.9 0.6 3.4 7.1 0.1 2.5 2 0 0 2 2 2 0 Sigma-54, DNA binding domain TrmB PF01978.14 gi|219852374|ref|YP_002466806.1| - 0.16 11.6 0.3 0.45 10.2 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF3568 PF12092.3 gi|219852375|ref|YP_002466807.1| - 0.006 16.2 0.1 0.0067 16.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DUF4458 PF14660.1 gi|219852375|ref|YP_002466807.1| - 0.13 12.3 1.1 0.17 11.9 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4458) Adenine_deam_C PF13382.1 gi|219852376|ref|YP_002466808.1| - 8.1e-48 161.8 0.0 1.4e-47 161.0 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|219852376|ref|YP_002466808.1| - 6.7e-28 98.2 0.0 2e-26 93.4 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|219852376|ref|YP_002466808.1| - 8e-16 58.8 4.6 2.5e-09 37.5 0.2 2.8 2 1 0 3 3 3 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|219852376|ref|YP_002466808.1| - 1e-06 28.4 0.2 3.4e-06 26.7 0.1 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|219852376|ref|YP_002466808.1| - 3.5e-06 26.5 0.6 0.0026 17.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Methyltransf_11 PF08241.7 gi|219852377|ref|YP_002466809.1| - 2.8e-17 63.0 0.1 4e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852377|ref|YP_002466809.1| - 4.4e-15 55.7 0.0 5.6e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852377|ref|YP_002466809.1| - 4.4e-13 49.4 0.1 6.5e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852377|ref|YP_002466809.1| - 2.2e-11 44.3 0.2 2.9e-11 43.9 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852377|ref|YP_002466809.1| - 4.3e-11 43.1 0.1 6.4e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852377|ref|YP_002466809.1| - 2.7e-09 37.0 1.1 4.8e-09 36.2 0.8 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852377|ref|YP_002466809.1| - 9.3e-09 35.0 0.0 1.2e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852377|ref|YP_002466809.1| - 3.8e-05 22.9 0.0 5e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|219852377|ref|YP_002466809.1| - 0.00013 21.1 0.0 0.00019 20.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|219852377|ref|YP_002466809.1| - 0.00018 20.9 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.6 gi|219852377|ref|YP_002466809.1| - 0.00022 20.7 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.15 gi|219852377|ref|YP_002466809.1| - 0.00057 19.0 0.0 0.0007 18.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|219852377|ref|YP_002466809.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|219852377|ref|YP_002466809.1| - 0.0033 15.8 0.1 0.0041 15.5 0.1 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.6 gi|219852377|ref|YP_002466809.1| - 0.005 16.2 0.0 0.0071 15.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|219852377|ref|YP_002466809.1| - 0.015 13.9 0.0 0.019 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UPF0146 PF03686.8 gi|219852377|ref|YP_002466809.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) AAA_32 PF13654.1 gi|219852378|ref|YP_002466810.1| - 0.0016 17.1 0.0 0.0018 16.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain P_gingi_FimA PF06321.6 gi|219852378|ref|YP_002466810.1| - 0.12 11.5 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Major fimbrial subunit protein (FimA) MFS_1 PF07690.11 gi|219852379|ref|YP_002466811.1| - 5.7e-53 179.8 43.1 5.7e-53 179.8 29.9 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|219852379|ref|YP_002466811.1| - 0.0015 17.0 52.2 0.0085 14.5 19.4 3.2 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|219852379|ref|YP_002466811.1| - 0.0079 15.9 5.0 0.018 14.8 0.1 3.8 3 2 0 3 3 3 1 MFS_1 like family TPR_1 PF00515.23 gi|219852380|ref|YP_002466812.1| - 1.8e-60 198.1 18.9 1.2e-08 34.1 0.0 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_11 PF13414.1 gi|219852380|ref|YP_002466812.1| - 6.1e-58 192.3 18.9 8.8e-13 47.7 1.3 7.1 4 2 3 7 7 7 7 TPR repeat TPR_2 PF07719.12 gi|219852380|ref|YP_002466812.1| - 7.7e-58 187.8 24.8 5.3e-07 29.0 0.9 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219852380|ref|YP_002466812.1| - 5e-44 148.0 10.6 1.7e-10 41.2 2.2 7.5 3 3 5 8 8 8 8 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219852380|ref|YP_002466812.1| - 1.2e-39 131.0 1.8 0.00023 20.7 0.0 11.2 8 3 3 11 11 11 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219852380|ref|YP_002466812.1| - 4.5e-39 129.3 15.9 2.3e-05 24.6 0.5 10.4 2 2 9 11 11 10 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219852380|ref|YP_002466812.1| - 3.3e-34 117.0 7.7 2.3e-06 27.8 0.0 6.2 4 1 1 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219852380|ref|YP_002466812.1| - 2.1e-29 101.1 27.1 2.8e-07 30.2 0.1 7.5 2 1 7 9 9 9 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|219852380|ref|YP_002466812.1| - 3.7e-29 100.6 38.7 7.9e-07 29.1 0.1 5.6 1 1 7 8 8 8 8 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|219852380|ref|YP_002466812.1| - 4.2e-29 98.9 3.2 0.024 15.0 0.2 10.9 11 0 0 11 11 11 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219852380|ref|YP_002466812.1| - 7.7e-29 99.4 17.9 9.6e-06 25.4 0.1 6.7 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219852380|ref|YP_002466812.1| - 1.5e-23 80.9 10.5 0.0037 17.3 0.1 9.5 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219852380|ref|YP_002466812.1| - 7e-15 53.5 20.2 0.03 14.1 0.5 9.8 10 0 0 10 10 10 4 Tetratricopeptide repeat BTAD PF03704.12 gi|219852380|ref|YP_002466812.1| - 7e-12 45.8 15.6 0.0044 17.3 0.1 4.7 4 0 0 4 4 4 3 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|219852380|ref|YP_002466812.1| - 1.7e-09 37.7 1.6 0.006 16.6 0.0 4.3 1 1 1 4 4 4 2 Tetratrico peptide repeat NARP1 PF12569.3 gi|219852380|ref|YP_002466812.1| - 2.3e-08 33.2 0.5 0.13 10.9 0.0 4.5 1 1 3 6 6 6 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|219852380|ref|YP_002466812.1| - 6.4e-06 25.9 9.8 0.0078 16.0 0.0 6.5 9 0 0 9 9 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|219852380|ref|YP_002466812.1| - 1.3e-05 24.4 0.7 0.64 9.0 0.1 5.2 2 1 1 4 4 4 2 Tetratricopeptide repeat PPR PF01535.15 gi|219852380|ref|YP_002466812.1| - 3e-05 23.6 11.9 9.9 6.3 0.1 9.0 10 0 0 10 10 10 0 PPR repeat TPR_3 PF07720.7 gi|219852380|ref|YP_002466812.1| - 0.00018 21.2 4.6 0.00023 20.8 0.7 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|219852380|ref|YP_002466812.1| - 0.00032 20.7 2.3 5.1 7.2 0.1 5.3 4 2 3 7 7 6 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|219852380|ref|YP_002466812.1| - 0.00032 20.9 0.7 12 6.1 0.0 4.3 4 1 1 5 5 4 0 Alkyl sulfatase dimerisation TPR_4 PF07721.9 gi|219852380|ref|YP_002466812.1| - 0.0014 18.8 22.7 0.44 11.1 0.3 7.3 8 0 0 8 8 6 2 Tetratricopeptide repeat PPR_3 PF13812.1 gi|219852380|ref|YP_002466812.1| - 0.0016 18.5 0.8 1.9 8.9 0.0 4.2 5 0 0 5 5 3 1 Pentatricopeptide repeat domain MIT PF04212.13 gi|219852380|ref|YP_002466812.1| - 0.01 15.6 15.4 0.56 10.1 0.2 6.8 9 0 0 9 9 8 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|219852380|ref|YP_002466812.1| - 0.013 15.3 5.4 2.3 8.0 0.5 5.3 5 2 2 7 7 7 0 Domain of Unknown Function (DUF3856) DUF3808 PF10300.4 gi|219852380|ref|YP_002466812.1| - 0.046 12.2 0.3 17 3.8 0.0 2.9 2 1 0 3 3 3 0 Protein of unknown function (DUF3808) TPR_10 PF13374.1 gi|219852380|ref|YP_002466812.1| - 0.15 12.0 23.3 0.66 9.9 1.0 7.8 9 0 0 9 9 9 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|219852380|ref|YP_002466812.1| - 0.15 11.1 0.7 7.2 5.7 0.0 2.9 3 1 0 3 3 3 0 Coatomer epsilon subunit SNAP PF14938.1 gi|219852380|ref|YP_002466812.1| - 0.8 8.7 4.4 8 5.5 0.6 3.4 3 1 0 3 3 3 0 Soluble NSF attachment protein, SNAP PKD PF00801.15 gi|219852381|ref|YP_002466813.1| - 2.9e-147 478.6 194.5 2.9e-17 62.1 5.6 14.6 14 1 0 14 14 14 12 PKD domain SBBP PF06739.6 gi|219852381|ref|YP_002466813.1| - 8e-30 102.3 61.5 7.4e-07 28.8 0.6 8.7 7 0 0 7 7 7 6 Beta-propeller repeat CBM_6 PF03422.10 gi|219852381|ref|YP_002466813.1| - 1.9e-21 76.4 0.7 1.9e-21 76.4 0.5 15.1 10 6 7 17 17 17 1 Carbohydrate binding module (family 6) DUF4625 PF15418.1 gi|219852381|ref|YP_002466813.1| - 0.027 14.6 20.5 14 5.7 0.0 8.9 10 0 0 10 10 10 0 Domain of unknown function (DUF4625) APS-reductase_C PF12139.3 gi|219852381|ref|YP_002466813.1| - 0.055 13.6 0.1 61 3.8 0.0 5.1 6 0 0 6 6 6 0 Adenosine-5'-phosphosulfate reductase beta subunit EMP24_GP25L PF01105.19 gi|219852381|ref|YP_002466813.1| - 2.3 7.9 2.5 87 2.7 0.0 4.0 3 1 1 4 4 4 0 emp24/gp25L/p24 family/GOLD PKD PF00801.15 gi|219852382|ref|YP_002466814.1| - 1.2e-105 345.3 170.0 2.1e-15 56.2 6.2 12.1 13 1 0 13 13 13 9 PKD domain CBM_6 PF03422.10 gi|219852382|ref|YP_002466814.1| - 6.1e-24 84.5 1.4 6.1e-24 84.5 1.0 10.9 5 3 5 11 11 11 1 Carbohydrate binding module (family 6) NosD PF05048.8 gi|219852382|ref|YP_002466814.1| - 3.5e-23 81.9 14.5 3.5e-23 81.9 10.1 3.7 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) DUF4625 PF15418.1 gi|219852382|ref|YP_002466814.1| - 0.0017 18.4 15.2 10 6.2 0.1 7.6 8 0 0 8 8 8 1 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|219852382|ref|YP_002466814.1| - 3 7.6 49.6 0.14 11.9 0.6 9.2 9 0 0 9 9 9 0 Y_Y_Y domain Plasmid_stabil PF05016.9 gi|219852384|ref|YP_002466816.1| - 1.5e-05 25.3 1.1 1.9e-05 24.9 0.8 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|219852384|ref|YP_002466816.1| - 0.0086 16.0 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) DIPSY PF11763.3 gi|219852384|ref|YP_002466816.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Cell-wall adhesin ligand-binding C-terminal NTP_transf_2 PF01909.18 gi|219852386|ref|YP_002466818.1| - 4.3e-11 42.9 0.0 5.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|219852386|ref|YP_002466818.1| - 0.035 13.7 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.18 gi|219852387|ref|YP_002466819.1| - 1.8e-10 41.0 0.1 2.3e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|219852388|ref|YP_002466820.1| - 0.00077 19.1 0.2 0.0012 18.4 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function DUF86 FeS PF04060.8 gi|219852389|ref|YP_002466821.1| - 4.2e-06 26.2 0.6 8e-06 25.3 0.4 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|219852390|ref|YP_002466822.1| - 6.7e-16 58.2 0.0 8.4e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|219852390|ref|YP_002466822.1| - 0.00024 20.4 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|219852390|ref|YP_002466822.1| - 0.00093 19.2 0.0 0.0017 18.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|219852390|ref|YP_002466822.1| - 0.00095 18.3 0.0 0.0016 17.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|219852390|ref|YP_002466822.1| - 0.0093 16.1 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|219852390|ref|YP_002466822.1| - 0.018 14.5 0.0 0.48 9.9 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|219852390|ref|YP_002466822.1| - 0.02 14.6 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|219852390|ref|YP_002466822.1| - 0.022 14.6 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|219852390|ref|YP_002466822.1| - 0.075 12.3 0.0 0.093 12.0 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_33 PF13671.1 gi|219852390|ref|YP_002466822.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|219852390|ref|YP_002466822.1| - 0.077 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|219852390|ref|YP_002466822.1| - 0.093 12.4 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|219852390|ref|YP_002466822.1| - 0.098 12.6 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|219852390|ref|YP_002466822.1| - 0.14 10.9 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.22 gi|219852391|ref|YP_002466823.1| - 8.1e-15 55.3 0.0 1.2e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852391|ref|YP_002466823.1| - 4.7e-07 30.0 0.0 0.0045 17.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219852391|ref|YP_002466823.1| - 0.00017 20.8 0.2 0.001 18.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|219852391|ref|YP_002466823.1| - 0.0027 17.2 0.0 0.0073 15.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|219852391|ref|YP_002466823.1| - 0.0041 17.2 0.0 0.014 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|219852391|ref|YP_002466823.1| - 0.0044 16.2 0.0 0.0072 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|219852391|ref|YP_002466823.1| - 0.0067 16.4 0.0 0.011 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|219852391|ref|YP_002466823.1| - 0.0083 15.6 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|219852391|ref|YP_002466823.1| - 0.014 14.7 0.0 0.072 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|219852391|ref|YP_002466823.1| - 0.018 14.7 0.0 0.6 9.7 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|219852391|ref|YP_002466823.1| - 0.019 14.9 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|219852391|ref|YP_002466823.1| - 0.043 12.7 0.0 0.062 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|219852391|ref|YP_002466823.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.7 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|219852391|ref|YP_002466823.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|219852391|ref|YP_002466823.1| - 0.13 12.0 0.0 5.3 6.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|219852391|ref|YP_002466823.1| - 0.14 12.1 0.1 3 7.7 0.0 2.4 1 1 1 2 2 2 0 AAA domain EF-hand_1 PF00036.27 gi|219852392|ref|YP_002466824.1| - 0.041 13.2 9.7 0.043 13.1 0.3 3.3 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.1 gi|219852392|ref|YP_002466824.1| - 0.49 10.4 6.8 0.5 10.4 0.1 3.4 3 0 0 3 3 3 0 EF-hand domain PKD PF00801.15 gi|219852393|ref|YP_002466825.1| - 7.9e-26 89.6 26.8 2.9e-16 58.9 6.6 3.6 3 0 0 3 3 3 2 PKD domain EF-hand_1 PF00036.27 gi|219852393|ref|YP_002466825.1| - 0.017 14.4 4.1 0.29 10.5 0.2 2.9 2 0 0 2 2 2 0 EF hand CFIA_Pcf11 PF11526.3 gi|219852393|ref|YP_002466825.1| - 0.04 14.0 0.0 6.2 7.0 0.0 3.3 4 0 0 4 4 4 0 Subunit of cleavage factor IA Pcf11 EF-hand_6 PF13405.1 gi|219852393|ref|YP_002466825.1| - 0.14 12.1 1.5 1.5 8.8 0.1 3.0 2 0 0 2 2 2 0 EF-hand domain ICMT PF04140.9 gi|219852394|ref|YP_002466826.1| - 4.2e-18 65.3 0.5 1.5e-17 63.5 0.1 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.8 gi|219852394|ref|YP_002466826.1| - 7.5e-17 61.3 2.2 7.5e-17 61.3 1.5 1.9 3 0 0 3 3 3 1 Phospholipid methyltransferase Steroid_dh PF02544.11 gi|219852394|ref|YP_002466826.1| - 2.1e-05 24.3 0.6 2.9e-05 23.8 0.2 1.4 2 0 0 2 2 2 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1295 PF06966.7 gi|219852394|ref|YP_002466826.1| - 6.6e-05 22.3 0.1 8.8e-05 21.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) Oxidored_q4 PF00507.14 gi|219852395|ref|YP_002466827.1| - 0.2 11.4 3.5 0.5 10.2 2.4 1.6 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CbiQ PF02361.11 gi|219852397|ref|YP_002466829.1| - 9.2e-30 103.8 7.4 1.1e-29 103.5 5.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|219852398|ref|YP_002466830.1| - 7.7e-60 201.1 0.0 2.2e-29 102.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|219852398|ref|YP_002466830.1| - 2e-22 80.5 2.5 4.4e-06 26.8 0.2 4.1 3 1 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|219852398|ref|YP_002466830.1| - 2e-12 46.4 0.1 5.6e-05 22.5 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|219852398|ref|YP_002466830.1| - 3.9e-12 45.8 0.0 0.0018 17.5 0.0 3.1 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|219852398|ref|YP_002466830.1| - 3.6e-11 43.3 1.8 4.7e-05 23.4 0.2 2.6 2 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|219852398|ref|YP_002466830.1| - 6.3e-10 38.4 0.6 5e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|219852398|ref|YP_002466830.1| - 1.5e-09 38.4 0.4 0.0014 18.9 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219852398|ref|YP_002466830.1| - 1.6e-08 34.0 0.0 0.066 12.2 0.0 3.7 4 0 0 4 4 4 3 AAA ATPase domain AAA_22 PF13401.1 gi|219852398|ref|YP_002466830.1| - 1.2e-07 31.9 0.2 0.0032 17.6 0.1 2.9 2 1 0 2 2 2 2 AAA domain MutS_V PF00488.16 gi|219852398|ref|YP_002466830.1| - 9.7e-07 28.4 0.0 0.039 13.3 0.0 2.6 2 0 0 2 2 2 2 MutS domain V AAA_25 PF13481.1 gi|219852398|ref|YP_002466830.1| - 1.3e-06 27.9 1.2 0.056 12.8 0.2 3.5 3 1 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|219852398|ref|YP_002466830.1| - 1.9e-06 27.4 5.2 0.028 14.1 0.1 3.6 3 0 0 3 3 3 2 Part of AAA domain AAA_17 PF13207.1 gi|219852398|ref|YP_002466830.1| - 2.5e-06 28.3 1.4 0.013 16.3 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|219852398|ref|YP_002466830.1| - 2.9e-06 27.0 0.0 0.097 12.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|219852398|ref|YP_002466830.1| - 4.6e-06 25.9 0.1 0.0031 16.7 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|219852398|ref|YP_002466830.1| - 5.3e-06 26.3 0.6 0.054 13.3 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|219852398|ref|YP_002466830.1| - 6e-06 26.5 0.1 0.038 14.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|219852398|ref|YP_002466830.1| - 1.3e-05 24.2 0.1 0.0041 16.0 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.9 gi|219852398|ref|YP_002466830.1| - 1.3e-05 24.9 0.8 0.037 13.7 0.1 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|219852398|ref|YP_002466830.1| - 1.8e-05 24.4 0.2 0.058 13.1 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|219852398|ref|YP_002466830.1| - 2.1e-05 24.2 1.8 0.071 12.7 0.1 2.6 3 0 0 3 3 2 2 NACHT domain AAA_14 PF13173.1 gi|219852398|ref|YP_002466830.1| - 4.2e-05 23.4 0.2 0.18 11.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|219852398|ref|YP_002466830.1| - 4.5e-05 23.0 0.3 0.11 11.8 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain Arch_ATPase PF01637.13 gi|219852398|ref|YP_002466830.1| - 6.2e-05 22.8 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 2 Archaeal ATPase UPF0079 PF02367.12 gi|219852398|ref|YP_002466830.1| - 6.9e-05 22.4 0.6 0.073 12.7 0.0 2.9 3 0 0 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|219852398|ref|YP_002466830.1| - 0.00011 22.1 1.7 0.38 10.6 0.2 2.6 2 0 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.18 gi|219852398|ref|YP_002466830.1| - 0.0002 21.2 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase cobW PF02492.14 gi|219852398|ref|YP_002466830.1| - 0.00029 20.3 4.4 0.13 11.6 0.2 2.7 3 0 0 3 3 2 2 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|219852398|ref|YP_002466830.1| - 0.00056 19.5 0.8 0.085 12.4 0.1 2.7 3 0 0 3 3 2 1 Chloramphenicol phosphotransferase-like protein ABC_ATPase PF09818.4 gi|219852398|ref|YP_002466830.1| - 0.00059 18.5 0.4 0.28 9.7 0.0 2.5 3 0 0 3 3 2 1 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|219852398|ref|YP_002466830.1| - 0.001 18.1 0.0 1.2 8.2 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|219852398|ref|YP_002466830.1| - 0.0011 18.4 0.0 0.017 14.5 0.0 2.5 3 0 0 3 3 3 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|219852398|ref|YP_002466830.1| - 0.0015 18.0 0.1 0.71 9.3 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|219852398|ref|YP_002466830.1| - 0.0015 18.2 0.5 0.05 13.3 0.1 2.6 2 0 0 2 2 2 1 NTPase VirE PF05272.6 gi|219852398|ref|YP_002466830.1| - 0.0027 17.2 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 1 Virulence-associated protein E Rad17 PF03215.10 gi|219852398|ref|YP_002466830.1| - 0.0031 16.2 0.0 0.23 10.1 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein G-alpha PF00503.15 gi|219852398|ref|YP_002466830.1| - 0.0036 16.0 0.3 0.69 8.5 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit Adeno_IVa2 PF02456.10 gi|219852398|ref|YP_002466830.1| - 0.0037 15.9 0.1 1.7 7.2 0.0 2.1 2 0 0 2 2 2 2 Adenovirus IVa2 protein Miro PF08477.8 gi|219852398|ref|YP_002466830.1| - 0.0058 17.1 0.1 2.8 8.4 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein DAP3 PF10236.4 gi|219852398|ref|YP_002466830.1| - 0.0063 15.4 0.3 0.79 8.6 0.0 2.1 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 PduV-EutP PF10662.4 gi|219852398|ref|YP_002466830.1| - 0.0064 15.9 1.5 0.86 9.0 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation APS_kinase PF01583.15 gi|219852398|ref|YP_002466830.1| - 0.0071 16.0 0.6 0.5 10.0 0.0 2.9 2 1 1 3 3 3 1 Adenylylsulphate kinase AAA_13 PF13166.1 gi|219852398|ref|YP_002466830.1| - 0.0084 14.6 0.0 0.088 11.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|219852398|ref|YP_002466830.1| - 0.011 15.8 0.1 2.7 8.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA PF00004.24 gi|219852398|ref|YP_002466830.1| - 0.014 15.5 0.2 6.5 6.9 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.3 gi|219852398|ref|YP_002466830.1| - 0.021 12.2 0.1 0.037 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SbcCD_C PF13558.1 gi|219852398|ref|YP_002466830.1| - 0.022 14.6 0.0 0.35 10.8 0.0 2.8 3 1 0 3 3 2 0 Putative exonuclease SbcCD, C subunit DUF815 PF05673.8 gi|219852398|ref|YP_002466830.1| - 0.028 13.3 0.1 6 5.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|219852398|ref|YP_002466830.1| - 0.03 13.2 0.1 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Guanylate_kin PF00625.16 gi|219852398|ref|YP_002466830.1| - 0.034 13.5 0.3 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase ArgK PF03308.11 gi|219852398|ref|YP_002466830.1| - 0.035 12.8 1.2 0.53 9.0 0.1 2.6 3 0 0 3 3 2 0 ArgK protein KAP_NTPase PF07693.9 gi|219852398|ref|YP_002466830.1| - 0.044 12.7 0.0 6.5 5.6 0.0 2.5 3 0 0 3 3 2 0 KAP family P-loop domain ATP_bind_1 PF03029.12 gi|219852398|ref|YP_002466830.1| - 0.052 13.0 0.6 4.4 6.7 0.1 2.5 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein AAA_PrkA PF08298.6 gi|219852398|ref|YP_002466830.1| - 0.072 11.7 0.0 1 7.9 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain Dynamin_N PF00350.18 gi|219852398|ref|YP_002466830.1| - 0.096 12.5 1.5 9.9 5.9 0.1 2.4 2 0 0 2 2 2 0 Dynamin family AAA_24 PF13479.1 gi|219852398|ref|YP_002466830.1| - 0.098 12.2 0.1 10 5.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|219852398|ref|YP_002466830.1| - 0.13 11.4 0.4 3.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIF1 PF05970.9 gi|219852398|ref|YP_002466830.1| - 0.14 11.0 0.0 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase PRK PF00485.13 gi|219852398|ref|YP_002466830.1| - 0.25 10.8 1.1 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.17 gi|219852398|ref|YP_002466830.1| - 0.26 10.7 1.1 5.8 6.3 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_cobalt PF09819.4 gi|219852399|ref|YP_002466831.1| - 5.5e-06 26.3 2.6 5.5e-06 26.3 1.8 2.1 1 1 1 2 2 2 1 ABC-type cobalt transport system, permease component DUF21 PF01595.15 gi|219852399|ref|YP_002466831.1| - 4 6.7 6.7 11 5.2 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF21 DUF4010 PF13194.1 gi|219852402|ref|YP_002466834.1| - 0.00042 19.6 0.6 0.00042 19.6 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) VWA_2 PF13519.1 gi|219852403|ref|YP_002466835.1| - 2.3e-34 119.0 2.9 3e-34 118.5 2.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|219852403|ref|YP_002466835.1| - 3e-21 75.9 0.2 4.4e-21 75.3 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.6 gi|219852403|ref|YP_002466835.1| - 2.8e-13 49.8 0.6 2.8e-13 49.8 0.4 1.9 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_3 PF13768.1 gi|219852403|ref|YP_002466835.1| - 7.3e-11 41.9 0.2 5.8e-10 39.0 0.1 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|219852403|ref|YP_002466835.1| - 0.0011 18.1 0.2 0.0031 16.6 0.1 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF1194 PF06707.6 gi|219852403|ref|YP_002466835.1| - 0.0014 17.6 1.0 0.035 13.0 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1194) vWA-TerF-like PF10138.4 gi|219852403|ref|YP_002466835.1| - 0.0035 17.2 0.1 0.0051 16.6 0.1 1.4 1 1 0 1 1 1 1 vWA found in TerF C terminus BRCT PF00533.21 gi|219852403|ref|YP_002466835.1| - 0.029 14.5 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain DUF2201 PF09967.4 gi|219852403|ref|YP_002466835.1| - 0.093 12.7 0.4 0.23 11.4 0.1 1.8 2 0 0 2 2 2 0 VWA-like domain (DUF2201) DUF4131 PF13567.1 gi|219852403|ref|YP_002466835.1| - 6.2 6.1 6.4 1 8.7 1.2 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF58 PF01882.13 gi|219852404|ref|YP_002466836.1| - 7.1e-23 80.5 0.0 1.4e-22 79.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|219852404|ref|YP_002466836.1| - 0.00023 20.3 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|219852404|ref|YP_002466836.1| - 0.013 15.5 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.6 gi|219852405|ref|YP_002466837.1| - 2.5e-65 218.0 0.0 4.2e-65 217.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|219852405|ref|YP_002466837.1| - 4.4e-13 49.1 0.0 1e-12 47.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|219852405|ref|YP_002466837.1| - 0.00013 21.1 0.3 0.0034 16.5 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|219852405|ref|YP_002466837.1| - 0.00018 20.4 0.0 0.0033 16.2 0.0 2.5 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|219852405|ref|YP_002466837.1| - 0.00026 20.4 0.0 0.001 18.6 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|219852405|ref|YP_002466837.1| - 0.00042 19.4 0.2 0.0023 17.0 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|219852405|ref|YP_002466837.1| - 0.00047 20.3 0.0 0.00085 19.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219852405|ref|YP_002466837.1| - 0.034 14.1 0.0 0.089 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain PKD PF00801.15 gi|219852407|ref|YP_002466839.1| - 1.3e-164 534.1 258.8 1e-15 57.2 1.6 18.3 19 1 0 19 19 19 14 PKD domain CBM_6 PF03422.10 gi|219852407|ref|YP_002466839.1| - 1.9e-21 76.5 1.1 1.9e-21 76.5 0.8 15.1 12 4 5 17 17 17 1 Carbohydrate binding module (family 6) SBBP PF06739.6 gi|219852407|ref|YP_002466839.1| - 3.1e-21 74.8 61.2 1.8e-06 27.6 5.4 10.5 8 0 0 8 8 8 7 Beta-propeller repeat Spin-Ssty PF02513.12 gi|219852408|ref|YP_002466840.1| - 0.11 12.0 0.4 4.5 6.9 0.0 2.6 3 0 0 3 3 3 0 Spin/Ssty Family PKD PF00801.15 gi|219852409|ref|YP_002466841.1| - 1.2e-10 41.0 7.0 1.2e-10 41.0 4.8 2.7 1 1 0 1 1 1 1 PKD domain EF-hand_1 PF00036.27 gi|219852409|ref|YP_002466841.1| - 0.44 9.9 9.9 0.11 11.9 0.4 3.0 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.1 gi|219852409|ref|YP_002466841.1| - 0.7 9.9 4.3 0.77 9.7 0.2 2.8 3 0 0 3 3 3 0 EF-hand domain TPR_11 PF13414.1 gi|219852413|ref|YP_002466845.1| - 1.8e-25 88.3 0.5 4.6e-13 48.6 0.0 2.1 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|219852413|ref|YP_002466845.1| - 6.5e-21 72.5 0.5 0.00015 21.4 0.0 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219852413|ref|YP_002466845.1| - 4.3e-19 67.2 0.4 0.00065 19.1 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219852413|ref|YP_002466845.1| - 2.5e-18 64.6 0.1 0.0005 20.0 0.0 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219852413|ref|YP_002466845.1| - 1.6e-13 50.9 0.0 6.6e-07 29.8 0.0 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219852413|ref|YP_002466845.1| - 4e-12 44.9 0.1 0.038 13.7 0.0 4.5 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219852413|ref|YP_002466845.1| - 5.5e-12 45.3 0.2 4.2e-07 29.7 0.3 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219852413|ref|YP_002466845.1| - 1.5e-11 43.8 0.5 0.066 13.8 0.0 4.5 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219852413|ref|YP_002466845.1| - 1.4e-10 40.9 0.7 0.0012 18.6 0.2 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219852413|ref|YP_002466845.1| - 9.8e-09 35.4 0.1 0.0022 18.3 0.0 2.7 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219852413|ref|YP_002466845.1| - 3.2e-07 29.6 1.2 0.068 12.9 0.0 4.7 4 1 0 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|219852413|ref|YP_002466845.1| - 3.4e-07 30.3 0.0 0.0046 17.0 0.0 2.1 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.1 gi|219852413|ref|YP_002466845.1| - 1.8e-06 27.2 0.1 0.00024 20.2 0.1 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219852413|ref|YP_002466845.1| - 4.2e-06 26.8 0.0 3.8 8.1 0.0 4.1 5 0 0 5 5 4 2 Tetratricopeptide repeat BTAD PF03704.12 gi|219852413|ref|YP_002466845.1| - 0.0036 17.6 0.4 0.054 13.7 0.0 2.2 1 1 0 2 2 2 1 Bacterial transcriptional activator domain NARP1 PF12569.3 gi|219852413|ref|YP_002466845.1| - 0.02 13.6 0.0 0.2 10.3 0.0 1.9 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|219852413|ref|YP_002466845.1| - 0.036 14.4 1.3 76 4.1 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|219852413|ref|YP_002466845.1| - 0.13 11.0 0.0 0.21 10.2 0.0 1.4 1 1 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) Alkyl_sulf_dimr PF14863.1 gi|219852413|ref|YP_002466845.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Alkyl sulfatase dimerisation MIT PF04212.13 gi|219852413|ref|YP_002466845.1| - 0.28 11.0 2.4 3.9 7.4 0.2 3.0 2 2 1 3 3 3 0 MIT (microtubule interacting and transport) domain SelR PF01641.13 gi|219852414|ref|YP_002466846.1| - 7.8e-50 167.7 0.1 9.2e-50 167.4 0.1 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|219852414|ref|YP_002466846.1| - 0.0068 16.4 0.8 0.014 15.4 0.6 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly HNH_5 PF14279.1 gi|219852414|ref|YP_002466846.1| - 0.036 14.0 0.0 0.085 12.8 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease Endonuclease_7 PF02945.10 gi|219852414|ref|YP_002466846.1| - 0.15 11.7 0.1 0.15 11.7 0.1 1.8 2 0 0 2 2 2 0 Recombination endonuclease VII DUF2296 PF10058.4 gi|219852414|ref|YP_002466846.1| - 0.32 10.7 0.1 0.32 10.7 0.1 2.0 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) CHASE4 PF05228.8 gi|219852415|ref|YP_002466847.1| - 2.2e-29 102.1 0.2 2.2e-27 95.6 0.1 2.6 2 0 0 2 2 2 1 CHASE4 domain PAS_9 PF13426.1 gi|219852415|ref|YP_002466847.1| - 2.4e-27 95.3 0.0 3.4e-12 46.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219852415|ref|YP_002466847.1| - 7.8e-27 93.4 0.1 4.1e-13 49.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|219852415|ref|YP_002466847.1| - 6.4e-24 83.9 0.3 5.5e-12 45.4 0.1 3.4 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|219852415|ref|YP_002466847.1| - 4.3e-22 77.9 0.1 8.2e-22 77.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|219852415|ref|YP_002466847.1| - 6.8e-14 51.8 0.0 2e-13 50.3 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|219852415|ref|YP_002466847.1| - 8.3e-11 41.3 0.1 6.1e-05 22.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain HAMP PF00672.20 gi|219852415|ref|YP_002466847.1| - 2.3e-08 34.0 4.0 2.3e-08 34.0 2.7 3.0 3 0 0 3 3 3 1 HAMP domain PAS_11 PF14598.1 gi|219852415|ref|YP_002466847.1| - 0.00029 20.7 0.0 0.0014 18.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|219852415|ref|YP_002466847.1| - 0.00039 20.4 0.0 0.002 18.1 0.0 2.2 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|219852415|ref|YP_002466847.1| - 0.00093 19.1 0.2 0.0055 16.6 0.1 2.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|219852415|ref|YP_002466847.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2703 PF10865.3 gi|219852416|ref|YP_002466848.1| - 2.1e-08 34.0 0.0 2.5e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) SRP54_N PF02881.14 gi|219852416|ref|YP_002466848.1| - 0.0064 16.5 0.0 0.01 15.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain Cohesin_HEAT PF12765.2 gi|219852416|ref|YP_002466848.1| - 0.065 13.2 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 HEAT repeat associated with sister chromatid cohesion DUF1624 PF07786.7 gi|219852417|ref|YP_002466849.1| - 1.1e-68 230.8 15.2 1.3e-68 230.6 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|219852417|ref|YP_002466849.1| - 5e-07 28.8 26.7 0.06 12.1 10.1 2.3 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|219852417|ref|YP_002466849.1| - 1e-05 24.3 10.9 0.00042 19.1 5.6 2.5 2 1 0 2 2 2 2 OpgC protein DUF2964 PF11177.3 gi|219852417|ref|YP_002466849.1| - 3.9 7.4 7.5 1.1 9.2 0.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2964) UvrB PF12344.3 gi|219852418|ref|YP_002466850.1| - 1.3e-21 75.8 0.9 3.4e-21 74.4 0.6 1.8 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|219852418|ref|YP_002466850.1| - 1.3e-15 56.9 0.1 3.2e-15 55.7 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|219852418|ref|YP_002466850.1| - 1.3e-14 54.4 0.0 7.3e-13 48.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|219852418|ref|YP_002466850.1| - 3.3e-07 29.5 5.1 3.5e-07 29.5 1.7 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|219852418|ref|YP_002466850.1| - 3.1e-06 26.7 0.0 0.0002 20.8 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|219852418|ref|YP_002466850.1| - 2.5e-05 23.9 0.8 0.0029 17.3 0.0 2.8 3 0 0 3 3 3 1 Part of AAA domain Kinesin PF00225.18 gi|219852418|ref|YP_002466850.1| - 0.017 13.8 0.1 0.032 12.9 0.0 1.5 2 0 0 2 2 2 0 Kinesin motor domain AAA_30 PF13604.1 gi|219852418|ref|YP_002466850.1| - 0.04 13.4 0.1 0.92 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Flavi_DEAD PF07652.9 gi|219852418|ref|YP_002466850.1| - 0.066 12.9 0.1 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Flavivirus DEAD domain UvrC_HhH_N PF08459.6 gi|219852419|ref|YP_002466851.1| - 2.9e-54 182.8 0.1 1.2e-53 180.8 0.0 2.0 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|219852419|ref|YP_002466851.1| - 4.4e-09 36.5 0.0 4.4e-09 36.5 0.0 2.4 4 0 0 4 4 4 1 GIY-YIG catalytic domain UVR PF02151.14 gi|219852419|ref|YP_002466851.1| - 1.3e-05 24.5 6.9 3.5e-05 23.1 4.8 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif ABC_tran PF00005.22 gi|219852420|ref|YP_002466852.1| - 3.9e-20 72.5 0.2 7.7e-09 35.9 0.0 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|219852420|ref|YP_002466852.1| - 9.6e-11 41.3 0.0 0.016 14.4 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|219852420|ref|YP_002466852.1| - 2.8e-08 34.0 5.3 0.0087 16.0 0.0 4.4 4 1 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|219852420|ref|YP_002466852.1| - 6.5e-08 31.9 0.1 0.007 15.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|219852420|ref|YP_002466852.1| - 9.7e-08 31.6 0.0 0.013 14.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|219852420|ref|YP_002466852.1| - 1.4e-06 27.5 0.0 0.057 12.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|219852420|ref|YP_002466852.1| - 3.3e-06 27.0 0.0 0.051 13.4 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_23 PF13476.1 gi|219852420|ref|YP_002466852.1| - 5.2e-06 26.9 0.7 0.089 13.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|219852420|ref|YP_002466852.1| - 5.8e-06 26.2 0.1 0.081 12.8 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|219852420|ref|YP_002466852.1| - 6.7e-06 26.2 0.5 0.65 10.1 0.0 4.2 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|219852420|ref|YP_002466852.1| - 1.8e-05 24.7 4.2 0.0057 16.6 0.3 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_16 PF13191.1 gi|219852420|ref|YP_002466852.1| - 2.2e-05 24.5 0.2 0.08 12.9 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain APS_kinase PF01583.15 gi|219852420|ref|YP_002466852.1| - 4.4e-05 23.1 0.1 0.11 12.1 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_18 PF13238.1 gi|219852420|ref|YP_002466852.1| - 0.00012 22.3 0.5 0.7 10.2 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|219852420|ref|YP_002466852.1| - 0.0004 21.1 5.9 0.25 12.1 0.2 3.9 4 0 0 4 4 2 2 AAA domain AAA_10 PF12846.2 gi|219852420|ref|YP_002466852.1| - 0.001 18.5 2.2 0.2 11.0 0.0 3.0 3 1 0 3 3 2 1 AAA-like domain NACHT PF05729.7 gi|219852420|ref|YP_002466852.1| - 0.0013 18.3 0.1 0.12 11.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain T2SE PF00437.15 gi|219852420|ref|YP_002466852.1| - 0.0014 17.5 0.1 1.2 7.9 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein DUF2075 PF09848.4 gi|219852420|ref|YP_002466852.1| - 0.0015 17.5 0.1 0.13 11.2 0.1 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|219852420|ref|YP_002466852.1| - 0.0045 16.5 0.0 0.15 11.5 0.0 2.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Miro PF08477.8 gi|219852420|ref|YP_002466852.1| - 0.0045 17.4 1.0 2.4 8.6 0.0 4.4 5 0 0 5 5 4 1 Miro-like protein cobW PF02492.14 gi|219852420|ref|YP_002466852.1| - 0.0046 16.4 0.9 0.46 9.8 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|219852420|ref|YP_002466852.1| - 0.0048 16.0 1.1 0.76 8.8 0.0 3.0 3 0 0 3 3 3 1 KaiC RNA_helicase PF00910.17 gi|219852420|ref|YP_002466852.1| - 0.005 16.9 0.1 1.4 9.1 0.0 2.9 3 0 0 3 3 2 1 RNA helicase MobB PF03205.9 gi|219852420|ref|YP_002466852.1| - 0.0059 16.3 1.4 1.2 8.8 0.2 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|219852420|ref|YP_002466852.1| - 0.0059 16.3 0.8 0.47 10.2 0.0 3.3 4 0 0 4 4 2 1 Part of AAA domain AAA_15 PF13175.1 gi|219852420|ref|YP_002466852.1| - 0.013 14.5 0.1 1.9 7.4 0.0 3.4 4 0 0 4 4 4 0 AAA ATPase domain KTI12 PF08433.5 gi|219852420|ref|YP_002466852.1| - 0.019 14.1 0.1 4.8 6.3 0.0 2.9 3 0 0 3 3 3 0 Chromatin associated protein KTI12 BCA_ABC_TP_C PF12399.3 gi|219852420|ref|YP_002466852.1| - 0.022 14.4 1.5 0.077 12.6 0.4 2.3 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Arch_ATPase PF01637.13 gi|219852420|ref|YP_002466852.1| - 0.026 14.2 1.3 5 6.7 0.1 3.2 3 1 0 3 3 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|219852420|ref|YP_002466852.1| - 0.043 13.7 3.0 2.3 8.2 0.0 3.7 4 1 0 4 4 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|219852420|ref|YP_002466852.1| - 0.044 12.5 0.1 5 5.8 0.0 2.4 2 0 0 2 2 2 0 ArgK protein AAA_28 PF13521.1 gi|219852420|ref|YP_002466852.1| - 0.044 13.7 0.2 6 6.7 0.0 2.8 3 0 0 3 3 2 0 AAA domain PRK PF00485.13 gi|219852420|ref|YP_002466852.1| - 0.067 12.7 0.0 2.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|219852420|ref|YP_002466852.1| - 0.067 13.1 0.7 22 5.0 0.0 3.8 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|219852420|ref|YP_002466852.1| - 0.091 12.3 0.2 34 3.9 0.0 3.2 3 0 0 3 3 3 0 AAA domain PEPCK_ATP PF01293.15 gi|219852420|ref|YP_002466852.1| - 0.14 10.6 0.1 1.3 7.4 0.0 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase Lar_restr_allev PF14354.1 gi|219852420|ref|YP_002466852.1| - 0.22 11.8 4.5 13 6.1 0.1 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar DAP3 PF10236.4 gi|219852420|ref|YP_002466852.1| - 0.23 10.3 0.5 2.6 6.9 0.2 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NTPase_1 PF03266.10 gi|219852420|ref|YP_002466852.1| - 0.31 10.7 4.9 2.2 7.9 0.1 3.5 4 0 0 4 4 3 0 NTPase Ribosomal_L44 PF00935.14 gi|219852420|ref|YP_002466852.1| - 3.1 7.8 5.8 5.1 7.1 0.7 3.2 3 0 0 3 3 3 0 Ribosomal protein L44 DHH PF01368.15 gi|219852421|ref|YP_002466853.1| - 5.7e-36 123.3 0.0 1.2e-35 122.3 0.0 1.5 1 1 0 1 1 1 1 DHH family DHHA2 PF02833.9 gi|219852421|ref|YP_002466853.1| - 1.7e-18 67.0 0.0 2.9e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 DHHA2 domain DRTGG PF07085.7 gi|219852421|ref|YP_002466853.1| - 1.9e-16 59.5 1.6 5e-16 58.2 1.1 1.7 1 0 0 1 1 1 1 DRTGG domain CBS PF00571.23 gi|219852421|ref|YP_002466853.1| - 2e-12 46.7 0.0 6.7e-06 25.7 0.0 2.6 2 0 0 2 2 2 2 CBS domain DUF2148 PF09918.4 gi|219852422|ref|YP_002466854.1| - 8.1e-33 111.9 0.1 1.3e-32 111.2 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|219852422|ref|YP_002466854.1| - 4.8e-05 22.8 1.6 0.0001 21.7 1.1 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster zf-UDP PF14569.1 gi|219852422|ref|YP_002466854.1| - 0.025 14.3 0.3 0.043 13.5 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding RING-finger GHMP_kinases_N PF00288.21 gi|219852423|ref|YP_002466855.1| - 3.8e-05 23.6 0.1 9.9e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain Cyt-b5 PF00173.23 gi|219852423|ref|YP_002466855.1| - 0.018 14.8 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 Cytochrome b5-like Heme/Steroid binding domain Fer4_20 PF14691.1 gi|219852425|ref|YP_002466857.1| - 1.5e-44 150.1 0.9 2.4e-44 149.4 0.6 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|219852425|ref|YP_002466857.1| - 5.8e-19 68.7 11.9 3.4e-17 63.0 8.3 3.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|219852425|ref|YP_002466857.1| - 1.3e-12 48.2 0.9 4.2e-05 23.6 0.0 3.1 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|219852425|ref|YP_002466857.1| - 2.7e-12 46.9 5.9 4e-06 27.1 0.5 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|219852425|ref|YP_002466857.1| - 7.5e-10 38.6 1.3 3.3e-09 36.6 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|219852425|ref|YP_002466857.1| - 8.2e-09 35.0 6.7 1.2e-05 24.6 0.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|219852425|ref|YP_002466857.1| - 2.1e-08 33.5 0.7 5.9e-07 28.8 0.1 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|219852425|ref|YP_002466857.1| - 1.1e-07 31.0 2.5 5.8e-05 22.1 0.1 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|219852425|ref|YP_002466857.1| - 2.1e-07 30.6 9.7 0.0001 21.9 0.1 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|219852425|ref|YP_002466857.1| - 2.2e-07 30.0 0.3 2.2e-07 30.0 0.2 2.6 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.14 gi|219852425|ref|YP_002466857.1| - 7.8e-07 28.4 1.6 5.5e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|219852425|ref|YP_002466857.1| - 1.5e-06 26.9 2.7 1.2e-05 24.0 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|219852425|ref|YP_002466857.1| - 1.5e-06 28.3 7.8 0.0016 18.6 0.3 3.0 3 0 0 3 3 3 2 Putative NAD(P)-binding DAO PF01266.19 gi|219852425|ref|YP_002466857.1| - 5.1e-06 25.6 0.4 5.1e-06 25.6 0.3 2.8 4 0 0 4 4 3 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|219852425|ref|YP_002466857.1| - 4.6e-05 23.4 0.8 0.0038 17.2 0.1 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|219852425|ref|YP_002466857.1| - 5.1e-05 22.4 0.6 0.057 12.5 0.0 2.6 3 0 0 3 3 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|219852425|ref|YP_002466857.1| - 0.00015 21.4 0.2 0.25 10.9 0.0 2.4 2 0 0 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|219852425|ref|YP_002466857.1| - 0.00042 19.7 0.1 0.0022 17.4 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|219852425|ref|YP_002466857.1| - 0.00049 19.7 3.3 0.053 13.1 0.0 2.5 3 0 0 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.1 gi|219852425|ref|YP_002466857.1| - 0.0005 19.8 0.7 0.86 9.3 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 YjeF_N PF03853.10 gi|219852425|ref|YP_002466857.1| - 0.00051 19.6 0.3 1.1 8.8 0.0 2.5 2 0 0 2 2 2 2 YjeF-related protein N-terminus Amino_oxidase PF01593.19 gi|219852425|ref|YP_002466857.1| - 0.00074 18.7 0.4 0.00074 18.7 0.2 2.0 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|219852425|ref|YP_002466857.1| - 0.00085 19.0 0.5 0.049 13.3 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PALP PF00291.20 gi|219852425|ref|YP_002466857.1| - 0.0036 16.5 2.9 0.11 11.7 0.0 2.5 3 0 0 3 3 2 1 Pyridoxal-phosphate dependent enzyme XdhC_C PF13478.1 gi|219852425|ref|YP_002466857.1| - 0.0041 17.4 1.6 0.013 15.8 0.1 2.5 3 0 0 3 3 2 1 XdhC Rossmann domain Trp_halogenase PF04820.9 gi|219852425|ref|YP_002466857.1| - 0.0056 15.3 1.4 0.11 11.1 0.2 2.2 2 0 0 2 2 2 1 Tryptophan halogenase K_oxygenase PF13434.1 gi|219852425|ref|YP_002466857.1| - 0.0077 15.1 0.1 0.3 9.9 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|219852425|ref|YP_002466857.1| - 0.0085 15.8 0.2 0.0085 15.8 0.1 2.5 3 0 0 3 3 2 1 FAD-NAD(P)-binding Fer4_7 PF12838.2 gi|219852425|ref|YP_002466857.1| - 0.013 15.8 0.2 0.013 15.8 0.1 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Shikimate_DH PF01488.15 gi|219852425|ref|YP_002466857.1| - 0.014 15.5 4.2 4.9 7.2 0.0 3.7 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Oxidored_nitro PF00148.14 gi|219852425|ref|YP_002466857.1| - 0.017 13.8 0.3 0.11 11.1 0.0 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase TrkA_N PF02254.13 gi|219852425|ref|YP_002466857.1| - 0.018 15.0 2.2 3.6 7.6 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|219852425|ref|YP_002466857.1| - 0.034 14.1 8.2 0.33 10.9 0.2 3.2 4 0 0 4 4 3 0 NADH(P)-binding Fer4_18 PF13746.1 gi|219852425|ref|YP_002466857.1| - 0.039 14.3 2.1 0.28 11.6 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain DFP PF04127.10 gi|219852425|ref|YP_002466857.1| - 0.04 13.5 0.9 4.4 6.8 0.0 2.6 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein FMO-like PF00743.14 gi|219852425|ref|YP_002466857.1| - 0.048 11.8 0.0 4.2 5.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Glyco_trans_4_4 PF13579.1 gi|219852425|ref|YP_002466857.1| - 0.084 13.0 3.6 3.5 7.7 1.2 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain DJ-1_PfpI PF01965.19 gi|219852425|ref|YP_002466857.1| - 0.11 11.9 0.9 0.37 10.2 0.0 2.4 3 1 0 3 3 1 0 DJ-1/PfpI family ApbA PF02558.11 gi|219852425|ref|YP_002466857.1| - 0.12 11.8 0.5 0.52 9.7 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|219852425|ref|YP_002466857.1| - 0.16 11.7 4.3 0.95 9.2 0.1 3.0 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lycopene_cycl PF05834.7 gi|219852425|ref|YP_002466857.1| - 0.18 10.6 1.0 0.4 9.5 0.1 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_8 PF13183.1 gi|219852425|ref|YP_002466857.1| - 4 7.5 9.6 0.27 11.2 0.6 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.4 gi|219852426|ref|YP_002466858.1| - 4.7e-11 42.0 2.1 4.7e-11 42.0 1.4 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|219852426|ref|YP_002466858.1| - 4.7e-11 43.2 0.0 1e-10 42.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|219852426|ref|YP_002466858.1| - 0.00016 21.7 0.0 0.00037 20.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|219852426|ref|YP_002466858.1| - 0.052 13.3 0.2 0.12 12.1 0.2 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PUA PF01472.15 gi|219852427|ref|YP_002466859.1| - 2.7e-11 43.0 0.1 5.8e-11 41.9 0.1 1.6 1 0 0 1 1 1 1 PUA domain TGT PF01702.13 gi|219852427|ref|YP_002466859.1| - 0.016 14.5 0.0 0.041 13.1 0.0 1.7 1 1 0 1 1 1 0 Queuine tRNA-ribosyltransferase TGT PF01702.13 gi|219852428|ref|YP_002466860.1| - 1e-49 169.0 0.0 1.3e-49 168.6 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase AMMECR1 PF01871.12 gi|219852429|ref|YP_002466861.1| - 7.5e-58 194.4 0.0 8.6e-58 194.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thymosin PF01290.15 gi|219852429|ref|YP_002466861.1| - 0.13 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Thymosin beta-4 family NosD PF05048.8 gi|219852430|ref|YP_002466862.1| - 1.9e-61 207.2 58.7 5.8e-47 159.8 23.8 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219852430|ref|YP_002466862.1| - 1.1e-36 125.9 73.0 2.3e-18 66.4 26.5 3.5 1 1 2 3 3 3 3 Right handed beta helix region EF-hand_1 PF00036.27 gi|219852430|ref|YP_002466862.1| - 0.32 10.4 6.0 0.54 9.6 0.4 3.2 3 0 0 3 3 3 0 EF hand AMP-binding PF00501.23 gi|219852431|ref|YP_002466863.1| - 3.2e-86 289.3 0.0 3.8e-86 289.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219852431|ref|YP_002466863.1| - 4e-19 69.3 0.1 7e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|219852432|ref|YP_002466864.1| - 3.3e-89 299.1 0.0 4e-89 298.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|219852432|ref|YP_002466864.1| - 1.8e-18 67.2 0.2 3.7e-18 66.2 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain C1q PF00386.16 gi|219852432|ref|YP_002466864.1| - 0.082 12.9 0.0 0.27 11.2 0.0 1.8 1 0 0 1 1 1 0 C1q domain NifU_N PF01592.11 gi|219852433|ref|YP_002466865.1| - 1.9e-50 170.0 0.1 2.1e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain CO_deh_flav_C PF03450.12 gi|219852433|ref|YP_002466865.1| - 0.005 16.7 0.1 0.026 14.4 0.0 1.9 1 1 1 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Phos_pyr_kin PF08543.7 gi|219852433|ref|YP_002466865.1| - 0.015 14.5 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Aminotran_5 PF00266.14 gi|219852434|ref|YP_002466866.1| - 6.3e-94 314.7 0.2 7.4e-94 314.5 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219852434|ref|YP_002466866.1| - 2.1e-09 36.9 0.3 2.7e-09 36.6 0.2 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|219852434|ref|YP_002466866.1| - 2.3e-09 36.7 0.6 3.5e-09 36.1 0.4 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|219852434|ref|YP_002466866.1| - 0.011 14.2 0.1 0.016 13.6 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain CBM_6 PF03422.10 gi|219852435|ref|YP_002466867.1| - 1.6e-81 270.6 66.9 1.1e-23 83.7 1.3 6.8 5 3 2 7 7 7 4 Carbohydrate binding module (family 6) NosD PF05048.8 gi|219852435|ref|YP_002466867.1| - 4.1e-47 160.3 36.2 1.6e-46 158.3 25.1 2.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219852435|ref|YP_002466867.1| - 1.9e-18 66.7 36.8 1.9e-18 66.7 25.5 3.0 5 0 0 5 5 5 1 Right handed beta helix region DUF4399 PF14347.1 gi|219852435|ref|YP_002466867.1| - 8.4e-07 28.9 1.9 5.6 7.0 0.0 5.2 4 1 0 4 4 4 3 Domain of unknown function (DUF4399) Plus-3 PF03126.13 gi|219852435|ref|YP_002466867.1| - 0.058 13.4 1.8 56 3.8 0.0 3.4 3 0 0 3 3 3 0 Plus-3 domain Phage_tail_2 PF06199.6 gi|219852435|ref|YP_002466867.1| - 1.9 8.5 13.9 13 5.8 0.0 5.3 6 1 0 6 6 6 0 Phage major tail protein 2 Shadoo PF14999.1 gi|219852437|ref|YP_002466869.1| - 0.015 15.1 0.5 0.016 15.0 0.3 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective LTD PF00932.14 gi|219852437|ref|YP_002466869.1| - 0.03 14.4 0.3 0.03 14.4 0.2 1.1 1 0 0 1 1 1 0 Lamin Tail Domain DDE_Tnp_1 PF01609.16 gi|219852438|ref|YP_002466870.1| - 3.5e-16 59.3 3.0 1e-15 57.9 2.1 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|219852438|ref|YP_002466870.1| - 8.8e-05 22.6 0.2 0.0002 21.5 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|219852438|ref|YP_002466870.1| - 0.0022 17.6 0.5 0.0041 16.7 0.3 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|219852438|ref|YP_002466870.1| - 0.0065 16.4 2.2 0.0091 15.9 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain Phage_integrase PF00589.17 gi|219852442|ref|YP_002466874.1| - 0.0012 18.6 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family TPR_11 PF13414.1 gi|219852443|ref|YP_002466875.1| - 1.2e-14 53.7 1.2 1.6e-14 53.2 0.7 1.3 1 1 0 1 1 1 1 TPR repeat TPR_1 PF00515.23 gi|219852443|ref|YP_002466875.1| - 2.8e-11 42.5 4.8 6.2e-06 25.5 0.2 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219852443|ref|YP_002466875.1| - 8.3e-11 40.9 2.7 1.4e-05 24.6 0.1 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219852443|ref|YP_002466875.1| - 6.8e-09 35.5 3.2 5.3e-06 26.2 0.3 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219852443|ref|YP_002466875.1| - 2.8e-08 32.9 5.9 0.0065 16.1 0.3 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219852443|ref|YP_002466875.1| - 4.5e-07 29.5 3.7 0.00082 19.3 0.1 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|219852443|ref|YP_002466875.1| - 3.5e-06 27.0 0.6 4.9e-06 26.5 0.4 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|219852443|ref|YP_002466875.1| - 2.5e-05 24.8 0.0 6.6e-05 23.4 0.0 1.7 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219852443|ref|YP_002466875.1| - 3.3e-05 24.0 1.6 0.22 12.0 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219852443|ref|YP_002466875.1| - 0.00048 20.4 0.4 0.0053 17.0 0.0 2.4 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219852443|ref|YP_002466875.1| - 0.0015 18.1 0.7 0.072 12.9 0.1 2.4 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_3 PF07720.7 gi|219852443|ref|YP_002466875.1| - 0.003 17.3 0.9 0.11 12.2 0.1 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219852443|ref|YP_002466875.1| - 0.003 18.0 0.0 0.13 12.9 0.0 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat DUF357 PF04010.8 gi|219852443|ref|YP_002466875.1| - 0.0036 16.9 0.2 1.2 8.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF357) TPR_9 PF13371.1 gi|219852443|ref|YP_002466875.1| - 0.017 14.9 0.0 5.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat SPO22 PF08631.5 gi|219852443|ref|YP_002466875.1| - 0.033 13.2 0.3 0.044 12.8 0.2 1.2 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like ChAPs PF09295.5 gi|219852443|ref|YP_002466875.1| - 0.049 12.4 0.1 0.057 12.1 0.0 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) RPN7 PF10602.4 gi|219852443|ref|YP_002466875.1| - 0.059 12.7 0.2 3.9 6.8 0.0 2.0 1 1 1 2 2 2 0 26S proteasome subunit RPN7 zinc_ribbon_2 PF13240.1 gi|219852444|ref|YP_002466876.1| - 1.1e-05 24.7 0.5 1.6e-05 24.2 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219852444|ref|YP_002466876.1| - 1.5e-05 24.0 0.6 2.2e-05 23.4 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219852444|ref|YP_002466876.1| - 6.5e-05 22.6 0.2 0.00011 21.9 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.1 gi|219852444|ref|YP_002466876.1| - 0.016 14.3 0.0 5.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|219852444|ref|YP_002466876.1| - 0.022 14.0 0.8 0.045 13.0 0.5 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|219852444|ref|YP_002466876.1| - 0.047 13.3 0.1 0.085 12.5 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PolC_DP2 PF03833.8 gi|219852444|ref|YP_002466876.1| - 0.08 10.5 0.0 0.085 10.5 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-IS66 PF13005.2 gi|219852444|ref|YP_002466876.1| - 0.083 12.8 0.8 11 6.0 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|219852444|ref|YP_002466876.1| - 0.12 11.9 2.0 6.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YjgP_YjgQ PF03739.9 gi|219852444|ref|YP_002466876.1| - 0.13 11.0 0.1 0.13 11.0 0.0 1.5 1 1 0 2 2 2 0 Predicted permease YjgP/YjgQ family YhfH PF14149.1 gi|219852444|ref|YP_002466876.1| - 0.13 12.0 1.6 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|219852444|ref|YP_002466876.1| - 0.18 11.7 9.0 1.2 9.1 0.2 3.1 2 1 1 3 3 3 0 Zinc ribbon domain zf-tcix PF14952.1 gi|219852444|ref|YP_002466876.1| - 0.2 10.9 1.4 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DNA_ligase_ZBD PF03119.11 gi|219852444|ref|YP_002466876.1| - 0.38 10.4 5.4 1.1 8.9 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|219852444|ref|YP_002466876.1| - 1.4 8.7 6.8 2.1 8.1 0.7 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_KTR PF14205.1 gi|219852444|ref|YP_002466876.1| - 1.4 8.4 4.3 0.79 9.2 0.2 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR zf-NADH-PPase PF09297.6 gi|219852444|ref|YP_002466876.1| - 1.5 8.4 6.0 1.5 8.3 0.4 2.3 1 1 2 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|219852444|ref|YP_002466876.1| - 1.9 8.5 5.4 26 4.9 0.6 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PLDc_N PF13396.1 gi|219852444|ref|YP_002466876.1| - 2.4 7.9 11.2 0.16 11.6 3.4 2.3 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal DUF1610 PF07754.6 gi|219852444|ref|YP_002466876.1| - 3.3 7.9 7.7 9.2 6.4 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NiFeSe_Hases PF00374.14 gi|219852445|ref|YP_002466877.1| - 0.09 11.5 0.0 0.1 11.3 0.0 1.0 1 0 0 1 1 1 0 Nickel-dependent hydrogenase HypD PF01924.11 gi|219852447|ref|YP_002466879.1| - 6.2e-137 456.1 0.4 6.9e-137 455.9 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family MS_channel PF00924.13 gi|219852448|ref|YP_002466880.1| - 1.9e-40 138.4 0.3 1.9e-40 138.4 0.2 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Pyr_redox_3 PF13738.1 gi|219852448|ref|YP_002466880.1| - 0.015 15.3 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Reg_prop PF07494.6 gi|219852449|ref|YP_002466881.1| - 8.7e-07 28.2 8.6 0.34 11.0 0.1 5.1 6 0 0 6 6 6 3 Two component regulator propeller SGL PF08450.7 gi|219852449|ref|YP_002466881.1| - 1.3e-05 24.7 0.9 0.12 11.7 0.0 3.9 2 1 2 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region CheD PF03975.8 gi|219852450|ref|YP_002466882.1| - 1.4e-27 95.7 0.0 1.6e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|219852451|ref|YP_002466883.1| - 3.4e-22 77.8 4.8 8.1e-12 44.6 0.1 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|219852451|ref|YP_002466883.1| - 7.3e-08 32.1 2.3 8e-05 22.4 0.3 2.9 2 1 1 3 3 3 2 Chemotaxis phosphatase CheX Hpt PF01627.18 gi|219852452|ref|YP_002466884.1| - 9.5e-22 76.8 0.3 3.7e-21 74.9 0.0 2.1 2 0 0 2 2 2 1 Hpt domain CheW PF01584.14 gi|219852452|ref|YP_002466884.1| - 5.9e-21 74.3 1.6 1.6e-20 73.0 1.1 1.8 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.21 gi|219852452|ref|YP_002466884.1| - 1.1e-19 70.1 0.1 2.9e-19 68.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P2 PF07194.6 gi|219852452|ref|YP_002466884.1| - 1.8e-18 66.1 0.1 6e-18 64.4 0.1 2.0 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|219852452|ref|YP_002466884.1| - 6.9e-14 51.9 5.3 2e-13 50.4 3.7 1.9 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|219852452|ref|YP_002466884.1| - 0.015 14.9 0.1 0.14 11.8 0.0 2.2 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|219852452|ref|YP_002466884.1| - 0.018 14.8 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CheB_methylest PF01339.12 gi|219852453|ref|YP_002466885.1| - 4.9e-62 208.5 0.9 3.3e-60 202.6 0.1 2.6 3 0 0 3 3 3 2 CheB methylesterase Response_reg PF00072.19 gi|219852453|ref|YP_002466885.1| - 2.9e-24 85.2 0.7 6.2e-24 84.1 0.5 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|219852454|ref|YP_002466886.1| - 1.8e-28 98.7 0.1 2e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.7 gi|219852455|ref|YP_002466887.1| - 2.3e-24 85.8 1.9 1.7e-23 83.0 0.0 2.5 3 0 0 3 3 3 1 Chemotaxis signal transduction system protein F from archaea bPH_2 PF03703.9 gi|219852455|ref|YP_002466887.1| - 0.076 13.0 0.7 1.2 9.1 0.0 3.1 3 1 0 3 3 3 0 Bacterial PH domain DUF973 PF06157.6 gi|219852456|ref|YP_002466888.1| - 0.064 12.2 2.4 0.088 11.7 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) AflR PF08493.5 gi|219852456|ref|YP_002466888.1| - 0.16 10.9 1.8 0.25 10.3 1.2 1.2 1 0 0 1 1 1 0 Aflatoxin regulatory protein DUF2542 PF10808.3 gi|219852457|ref|YP_002466889.1| - 0.28 11.4 0.0 0.28 11.4 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2542) T2SE PF00437.15 gi|219852458|ref|YP_002466890.1| - 6.8e-50 169.4 0.0 1.1e-49 168.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|219852458|ref|YP_002466890.1| - 0.0014 18.1 0.0 0.0036 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|219852458|ref|YP_002466890.1| - 0.0015 18.8 0.0 0.0032 17.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|219852458|ref|YP_002466890.1| - 0.047 13.8 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3091 PF11291.3 gi|219852458|ref|YP_002466890.1| - 0.058 13.3 0.0 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3091) AAA_23 PF13476.1 gi|219852458|ref|YP_002466890.1| - 0.14 12.5 0.8 0.39 11.0 0.6 1.7 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|219852459|ref|YP_002466891.1| - 1.3e-23 83.3 0.1 1.5e-23 83.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|219852459|ref|YP_002466891.1| - 6.7e-08 32.1 0.0 1.3e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|219852459|ref|YP_002466891.1| - 6.9e-05 21.8 1.4 0.0018 17.2 0.1 2.1 1 1 1 2 2 2 2 PAXNEB protein DUF835 PF05763.7 gi|219852459|ref|YP_002466891.1| - 0.002 17.6 0.7 0.0055 16.2 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF835) Rad51 PF08423.6 gi|219852459|ref|YP_002466891.1| - 0.0061 15.4 0.1 0.028 13.3 0.0 1.8 2 0 0 2 2 2 1 Rad51 AAA_14 PF13173.1 gi|219852459|ref|YP_002466891.1| - 0.02 14.7 0.1 4.3 7.2 0.1 2.8 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|219852459|ref|YP_002466891.1| - 0.029 14.4 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|219852459|ref|YP_002466891.1| - 0.1 11.5 0.0 2.7 6.8 0.0 2.3 2 1 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Arch_flagellin PF01917.11 gi|219852460|ref|YP_002466892.1| - 0.062 12.9 2.4 0.076 12.6 1.7 1.4 1 1 0 1 1 1 0 Archaebacterial flagellin TAFII28 PF04719.9 gi|219852460|ref|YP_002466892.1| - 0.071 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 hTAFII28-like protein conserved region Arch_flagellin PF01917.11 gi|219852461|ref|YP_002466893.1| - 1.4e-05 24.8 0.0 4.5e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin CDC45 PF02724.9 gi|219852462|ref|YP_002466894.1| - 0.00048 18.3 6.6 0.00066 17.8 4.6 1.1 1 0 0 1 1 1 1 CDC45-like protein Arch_fla_DE PF04659.8 gi|219852462|ref|YP_002466894.1| - 0.0012 18.5 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein Med2 PF11214.3 gi|219852462|ref|YP_002466894.1| - 0.0062 16.5 4.2 0.012 15.6 2.9 1.5 1 0 0 1 1 1 1 Mediator complex subunit 2 SGT1 PF07093.6 gi|219852462|ref|YP_002466894.1| - 0.0088 14.4 8.9 0.011 14.2 6.2 1.1 1 0 0 1 1 1 1 SGT1 protein Flu_B_NS1 PF02942.9 gi|219852462|ref|YP_002466894.1| - 0.026 13.4 1.3 0.029 13.2 0.1 1.6 2 0 0 2 2 2 0 Influenza B non-structural protein (NS1) BcrAD_BadFG PF01869.15 gi|219852462|ref|YP_002466894.1| - 0.074 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family DUF2201_N PF13203.1 gi|219852462|ref|YP_002466894.1| - 0.58 9.2 7.1 0.79 8.8 4.9 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain BTV_NS2 PF04514.7 gi|219852462|ref|YP_002466894.1| - 1.9 7.3 10.4 2.6 6.8 7.2 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 RR_TM4-6 PF06459.7 gi|219852462|ref|YP_002466894.1| - 2.3 8.0 7.9 3 7.6 5.5 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 FLO_LFY PF01698.11 gi|219852462|ref|YP_002466894.1| - 3.7 6.3 9.2 5.6 5.6 6.4 1.2 1 0 0 1 1 1 0 Floricaula / Leafy protein DUF1510 PF07423.6 gi|219852462|ref|YP_002466894.1| - 4.8 6.4 12.6 7 5.9 8.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) PK PF00224.16 gi|219852463|ref|YP_002466895.1| - 4.8e-115 383.8 2.5 6e-115 383.5 1.7 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|219852463|ref|YP_002466895.1| - 2.8e-21 75.2 0.0 1e-20 73.4 0.0 2.0 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|219852463|ref|YP_002466895.1| - 0.0023 16.8 1.0 0.0044 15.9 0.4 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Peptidase_C25 PF01364.13 gi|219852463|ref|YP_002466895.1| - 0.13 11.1 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C25 UDG PF03167.14 gi|219852464|ref|YP_002466896.1| - 3.5e-10 39.5 0.0 4.8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PP2C_2 PF13672.1 gi|219852465|ref|YP_002466897.1| - 4.7e-35 120.9 0.1 5.5e-35 120.7 0.1 1.0 1 0 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|219852465|ref|YP_002466897.1| - 0.024 14.3 0.3 0.047 13.3 0.2 1.5 1 1 0 1 1 1 0 Stage II sporulation protein E (SpoIIE) Acetyltransf_10 PF13673.1 gi|219852465|ref|YP_002466897.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FHA PF00498.21 gi|219852467|ref|YP_002466899.1| - 6.6e-10 38.9 0.0 1.1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 FHA domain HTH_20 PF12840.2 gi|219852467|ref|YP_002466899.1| - 8.7e-08 31.8 0.0 2.4e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|219852467|ref|YP_002466899.1| - 7.7e-07 28.6 0.0 2e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|219852467|ref|YP_002466899.1| - 1.3e-05 24.8 0.2 3.7e-05 23.4 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|219852467|ref|YP_002466899.1| - 0.00035 20.2 0.0 0.0009 18.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|219852467|ref|YP_002466899.1| - 0.0004 19.7 2.2 0.00043 19.6 0.3 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|219852467|ref|YP_002466899.1| - 0.0054 16.6 0.2 0.009 15.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|219852467|ref|YP_002466899.1| - 0.0065 16.5 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|219852467|ref|YP_002466899.1| - 0.0081 15.7 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Pkinase PF00069.20 gi|219852468|ref|YP_002466900.1| - 1e-39 136.2 0.0 1.4e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|219852468|ref|YP_002466900.1| - 4.2e-20 71.9 0.0 6.2e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Lectin_N PF03954.9 gi|219852468|ref|YP_002466900.1| - 0.011 15.1 0.0 0.03 13.7 0.0 1.7 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain TMEM51 PF15345.1 gi|219852468|ref|YP_002466900.1| - 0.2 11.3 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 51 Cas_Cas6 PF01881.11 gi|219852469|ref|YP_002466901.1| - 1.8e-05 25.0 0.0 3.2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 CRISPR associated protein Cas6 NIR_SIR PF01077.17 gi|219852472|ref|YP_002466904.1| - 2.3e-29 101.7 0.0 3.2e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|219852472|ref|YP_002466904.1| - 4.3e-18 64.7 0.0 7e-18 64.0 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|219852472|ref|YP_002466904.1| - 6.1e-10 39.3 7.3 6.1e-10 39.3 5.0 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852472|ref|YP_002466904.1| - 1.8e-09 36.8 7.4 1.4e-05 24.5 0.2 3.9 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852472|ref|YP_002466904.1| - 6.5e-07 29.0 12.6 0.0037 17.0 0.0 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852472|ref|YP_002466904.1| - 7.9e-07 28.6 9.8 9.7e-06 25.2 1.5 4.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219852472|ref|YP_002466904.1| - 8.8e-06 25.8 26.2 1.8e-05 24.9 8.0 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|219852472|ref|YP_002466904.1| - 1.6e-05 24.6 0.4 4.4e-05 23.2 0.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852472|ref|YP_002466904.1| - 4.8e-05 23.0 10.7 0.00018 21.2 2.3 4.1 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852472|ref|YP_002466904.1| - 5.4e-05 22.9 11.5 5.7e-05 22.8 6.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852472|ref|YP_002466904.1| - 5.9e-05 23.7 11.9 0.018 15.7 0.5 3.2 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|219852472|ref|YP_002466904.1| - 0.00016 21.6 10.8 0.00016 21.6 7.5 3.0 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852472|ref|YP_002466904.1| - 0.0032 17.7 17.1 0.1 12.9 0.6 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852472|ref|YP_002466904.1| - 0.016 15.6 17.7 0.13 12.7 0.8 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852472|ref|YP_002466904.1| - 0.047 14.2 4.5 0.047 14.2 3.2 4.7 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219852472|ref|YP_002466904.1| - 0.063 13.6 4.4 0.063 13.6 3.0 4.0 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852472|ref|YP_002466904.1| - 3.1 8.4 15.1 0.32 11.5 1.7 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF3821 PF12863.2 gi|219852473|ref|YP_002466905.1| - 5.6e-52 176.4 2.2 5.6e-52 176.4 1.5 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3821) Lipase_GDSL PF00657.17 gi|219852473|ref|YP_002466905.1| - 9.5e-12 45.2 0.8 9.5e-12 45.2 0.5 1.8 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase B12-binding PF02310.14 gi|219852473|ref|YP_002466905.1| - 0.021 14.6 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain PvlArgDC PF01862.11 gi|219852474|ref|YP_002466906.1| - 4.4e-64 215.0 0.0 4.9e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AIRS_C PF02769.17 gi|219852475|ref|YP_002466907.1| - 5.5e-17 62.1 0.4 1.6e-16 60.6 0.3 1.9 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|219852475|ref|YP_002466907.1| - 5.5e-12 45.7 0.7 1.4e-11 44.4 0.5 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Methyltransf_11 PF08241.7 gi|219852476|ref|YP_002466908.1| - 2e-24 85.8 0.0 4.1e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852476|ref|YP_002466908.1| - 7.4e-18 64.7 0.0 9.5e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219852476|ref|YP_002466908.1| - 1.6e-14 53.6 0.0 4.9e-13 48.7 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|219852476|ref|YP_002466908.1| - 2e-13 50.1 0.0 4.2e-13 49.1 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852476|ref|YP_002466908.1| - 2.2e-13 50.4 0.0 3.8e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852476|ref|YP_002466908.1| - 1.9e-12 47.7 0.0 3.2e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852476|ref|YP_002466908.1| - 9.2e-12 45.2 0.0 4.9e-11 42.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852476|ref|YP_002466908.1| - 1.1e-05 25.4 0.0 2.1e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|219852476|ref|YP_002466908.1| - 1.2e-05 24.8 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|219852476|ref|YP_002466908.1| - 3.7e-05 22.9 0.1 8.7e-05 21.7 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|219852476|ref|YP_002466908.1| - 0.0024 17.5 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|219852476|ref|YP_002466908.1| - 0.012 14.0 0.0 0.015 13.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_4 PF02390.12 gi|219852476|ref|YP_002466908.1| - 0.025 13.6 0.0 0.88 8.5 0.0 2.1 2 0 0 2 2 2 0 Putative methyltransferase N6_N4_Mtase PF01555.13 gi|219852476|ref|YP_002466908.1| - 0.026 14.0 0.0 0.61 9.5 0.0 2.2 2 0 0 2 2 2 0 DNA methylase PCMT PF01135.14 gi|219852476|ref|YP_002466908.1| - 0.029 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|219852476|ref|YP_002466908.1| - 0.049 13.0 0.0 0.24 10.7 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|219852476|ref|YP_002466908.1| - 0.13 10.9 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) NodS PF05401.6 gi|219852476|ref|YP_002466908.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) DNA_pol3_delta2 PF13177.1 gi|219852477|ref|YP_002466909.1| - 2.4e-11 43.5 0.0 3.9e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|219852477|ref|YP_002466909.1| - 3.8e-07 29.1 0.0 0.01 14.5 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|219852477|ref|YP_002466909.1| - 6.8e-06 26.3 0.0 3.8e-05 23.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rep_fac_C PF08542.6 gi|219852477|ref|YP_002466909.1| - 2.7e-05 24.0 0.1 5.2e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_16 PF13191.1 gi|219852477|ref|YP_002466909.1| - 9.3e-05 22.4 1.2 0.0005 20.0 0.8 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|219852477|ref|YP_002466909.1| - 0.0004 20.5 0.1 0.0032 17.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|219852477|ref|YP_002466909.1| - 0.0013 18.4 0.1 0.013 15.2 0.0 2.6 2 1 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|219852477|ref|YP_002466909.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|219852477|ref|YP_002466909.1| - 0.0047 17.7 0.0 0.0087 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|219852477|ref|YP_002466909.1| - 0.0076 15.4 0.0 0.014 14.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|219852477|ref|YP_002466909.1| - 0.0082 15.2 0.0 0.025 13.6 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_23 PF13476.1 gi|219852477|ref|YP_002466909.1| - 0.0096 16.2 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|219852477|ref|YP_002466909.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|219852477|ref|YP_002466909.1| - 0.015 15.2 0.0 0.039 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|219852477|ref|YP_002466909.1| - 0.018 14.9 0.0 0.046 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|219852477|ref|YP_002466909.1| - 0.039 14.2 0.0 0.094 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|219852477|ref|YP_002466909.1| - 0.058 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|219852477|ref|YP_002466909.1| - 0.11 12.2 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|219852477|ref|YP_002466909.1| - 0.15 11.6 0.0 6.8 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF137 PF02006.11 gi|219852478|ref|YP_002466910.1| - 8.1e-66 220.7 0.9 1.1e-65 220.3 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 AAA_5 PF07728.9 gi|219852478|ref|YP_002466910.1| - 0.002 17.8 0.3 0.021 14.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) TPP_enzyme_M PF00205.17 gi|219852478|ref|YP_002466910.1| - 0.014 15.1 1.8 0.24 11.1 1.2 2.8 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain MCM_N PF14551.1 gi|219852478|ref|YP_002466910.1| - 0.064 13.7 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 MCM N-terminal domain GHMP_kinases_N PF00288.21 gi|219852479|ref|YP_002466911.1| - 6.4e-10 38.9 2.3 1.3e-09 37.9 1.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|219852479|ref|YP_002466911.1| - 0.011 15.8 0.0 0.026 14.7 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases C terminal DFP PF04127.10 gi|219852480|ref|YP_002466912.1| - 6.6e-34 117.1 0.0 2.2e-33 115.4 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|219852480|ref|YP_002466912.1| - 2.5e-29 101.5 1.4 4.6e-29 100.7 1.0 1.5 1 0 0 1 1 1 1 Flavoprotein CPSase_L_chain PF00289.17 gi|219852480|ref|YP_002466912.1| - 0.048 13.7 0.5 0.14 12.2 0.1 2.0 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FlpD PF02662.11 gi|219852480|ref|YP_002466912.1| - 0.11 12.1 0.2 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Met_10 PF02475.11 gi|219852481|ref|YP_002466913.1| - 9.7e-39 133.0 0.0 1.2e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|219852481|ref|YP_002466913.1| - 2.6e-06 27.9 0.0 1.1e-05 25.9 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852481|ref|YP_002466913.1| - 6.5e-05 22.9 0.1 0.00013 21.9 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219852481|ref|YP_002466913.1| - 0.0049 16.2 0.0 0.0088 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|219852481|ref|YP_002466913.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain NMD3 PF04981.8 gi|219852482|ref|YP_002466914.1| - 3.7e-43 147.3 0.0 4.9e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 NMD3 family GFA PF04828.9 gi|219852482|ref|YP_002466914.1| - 0.054 13.4 0.3 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|219852482|ref|YP_002466914.1| - 0.095 11.9 0.2 0.19 10.9 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF424 PF04242.8 gi|219852483|ref|YP_002466915.1| - 2.1e-23 82.1 0.0 2.3e-23 82.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TatD_DNase PF01026.16 gi|219852484|ref|YP_002466916.1| - 1.8e-17 63.4 0.0 5.8e-16 58.4 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF372 PF04036.7 gi|219852485|ref|YP_002466917.1| - 1.2e-20 72.6 0.3 1.8e-20 72.1 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|219852485|ref|YP_002466917.1| - 2.7e-16 59.3 0.0 3.8e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) Peptidase_S8 PF00082.17 gi|219852486|ref|YP_002466918.1| - 4.9e-16 58.7 0.5 3.5e-15 55.8 0.1 2.2 2 0 0 2 2 2 1 Subtilase family PEGA PF08308.6 gi|219852487|ref|YP_002466919.1| - 4.7e-88 289.0 15.9 5.6e-20 70.8 0.3 5.1 5 0 0 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.1 gi|219852487|ref|YP_002466919.1| - 2e-18 66.1 16.4 0.00052 20.0 2.0 6.3 6 1 0 6 6 6 5 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|219852487|ref|YP_002466919.1| - 2e-07 30.9 0.0 0.95 9.5 0.0 4.6 4 0 0 4 4 4 3 Domain of unknown function (DUF4480) DUF1533 PF07550.6 gi|219852487|ref|YP_002466919.1| - 1.1e-05 25.2 0.0 0.33 10.9 0.0 4.5 4 0 0 4 4 4 1 Protein of unknown function (DUF1533) DUF911 PF06023.7 gi|219852487|ref|YP_002466919.1| - 0.00087 18.5 2.9 0.23 10.6 0.0 3.1 2 2 0 3 3 3 2 Archaeal protein of unknown function (DUF911) PBP-Tp47_c PF14888.1 gi|219852487|ref|YP_002466919.1| - 0.02 14.5 0.2 2.4 7.7 0.0 3.3 3 0 0 3 3 3 0 Penicillin-binding protein Tp47 domain C DUF3409 PF11889.3 gi|219852487|ref|YP_002466919.1| - 0.39 10.4 6.1 11 5.7 0.3 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3409) Rhodanese PF00581.15 gi|219852488|ref|YP_002466920.1| - 3.8e-20 72.3 0.0 4.5e-09 36.6 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|219852488|ref|YP_002466920.1| - 6.2e-14 52.0 1.8 1.9e-13 50.5 1.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Inhibitor_I42 PF09394.5 gi|219852489|ref|YP_002466921.1| - 2e-26 92.1 2.0 3.4e-26 91.4 1.4 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DUF1034 PF06280.7 gi|219852489|ref|YP_002466921.1| - 0.052 13.9 0.4 0.094 13.1 0.3 1.5 1 0 0 1 1 1 0 Fn3-like domain (DUF1034) SoxE PF06525.6 gi|219852489|ref|YP_002466921.1| - 0.35 10.1 9.9 1.2 8.3 2.8 2.0 1 1 1 2 2 2 0 Sulfocyanin (SoxE) NERD PF08378.6 gi|219852491|ref|YP_002466923.1| - 0.00022 21.4 0.0 0.00053 20.2 0.0 1.7 1 1 0 1 1 1 1 Nuclease-related domain DJ-1_PfpI PF01965.19 gi|219852492|ref|YP_002466924.1| - 9.6e-14 51.0 0.0 2e-13 50.0 0.0 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family DJ-1_PfpI_N PF13587.1 gi|219852492|ref|YP_002466924.1| - 0.0019 17.6 0.0 0.0047 16.4 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of DJ-1_PfpI family zinc_ribbon_2 PF13240.1 gi|219852493|ref|YP_002466925.1| - 7.1e-05 22.1 1.2 0.00011 21.5 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219852493|ref|YP_002466925.1| - 0.00027 20.0 0.8 0.0004 19.4 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219852493|ref|YP_002466925.1| - 0.0017 18.1 0.5 0.0021 17.8 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|219852493|ref|YP_002466925.1| - 0.0019 17.8 1.5 0.0029 17.2 1.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|219852493|ref|YP_002466925.1| - 0.0061 16.2 1.6 0.0088 15.7 1.1 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|219852493|ref|YP_002466925.1| - 0.014 14.9 1.0 3.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|219852493|ref|YP_002466925.1| - 0.12 12.1 0.5 0.2 11.4 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Ogr_Delta PF04606.7 gi|219852493|ref|YP_002466925.1| - 0.17 11.5 2.1 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.1 gi|219852493|ref|YP_002466925.1| - 0.2 10.8 3.3 1.2 8.4 0.1 2.6 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|219852493|ref|YP_002466925.1| - 0.8 9.5 4.0 4.5 7.1 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|219852493|ref|YP_002466925.1| - 1 8.9 5.9 1.3 8.6 0.3 2.5 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO Auto_anti-p27 PF06677.7 gi|219852493|ref|YP_002466925.1| - 1.2 8.9 4.6 2.2 8.1 3.2 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPXG PF14255.1 gi|219852493|ref|YP_002466925.1| - 1.6 8.6 3.7 8.4 6.3 0.5 2.3 2 1 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.7 gi|219852493|ref|YP_002466925.1| - 2.9 8.0 4.6 4.4 7.5 0.3 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ISL3 PF14690.1 gi|219852493|ref|YP_002466925.1| - 3.3 7.7 6.4 14 5.7 0.3 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|219852493|ref|YP_002466925.1| - 6.3 6.8 5.8 42 4.2 0.6 2.3 1 1 1 2 2 2 0 zinc-finger Hexapep PF00132.19 gi|219852494|ref|YP_002466926.1| - 8.5e-07 28.2 12.1 2.5e-06 26.7 2.8 2.7 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219852494|ref|YP_002466926.1| - 0.48 10.0 10.3 3.1 7.4 1.5 2.7 1 1 1 2 2 2 0 Hexapeptide repeat of succinyl-transferase zinc_ribbon_2 PF13240.1 gi|219852496|ref|YP_002466928.1| - 6.1e-08 31.9 3.1 9.6e-08 31.2 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Creatinase_N PF01321.13 gi|219852496|ref|YP_002466928.1| - 0.0088 16.5 0.1 0.014 15.8 0.1 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain zf-ribbon_3 PF13248.1 gi|219852496|ref|YP_002466928.1| - 0.0095 15.1 0.7 0.015 14.4 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|219852496|ref|YP_002466928.1| - 0.036 13.8 1.6 0.061 13.1 1.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Retrotrans_gag PF03732.12 gi|219852496|ref|YP_002466928.1| - 0.049 13.7 2.3 0.086 12.9 1.6 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein Prok-RING_1 PF14446.1 gi|219852496|ref|YP_002466928.1| - 0.055 13.2 1.2 0.09 12.5 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2164 PF09932.4 gi|219852497|ref|YP_002466929.1| - 1.4e-20 72.8 0.2 1.6e-20 72.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) Fer4_9 PF13187.1 gi|219852499|ref|YP_002466931.1| - 9.3e-06 25.8 25.6 0.00035 20.7 10.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.2 gi|219852499|ref|YP_002466931.1| - 1.8e-05 24.7 0.0 2.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Fer4_16 PF13484.1 gi|219852499|ref|YP_002466931.1| - 2.5e-05 24.9 13.4 0.0024 18.5 2.2 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|219852499|ref|YP_002466931.1| - 3.7e-05 23.1 17.2 0.00095 18.6 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852499|ref|YP_002466931.1| - 7.4e-05 22.7 5.1 0.00087 19.2 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852499|ref|YP_002466931.1| - 0.00014 22.1 6.4 0.011 16.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219852499|ref|YP_002466931.1| - 0.00042 20.0 15.6 0.0039 16.9 11.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852499|ref|YP_002466931.1| - 0.00055 20.2 15.5 0.0023 18.2 10.8 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852499|ref|YP_002466931.1| - 0.0021 17.9 15.5 0.0024 17.6 1.8 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Flavodoxin_1 PF00258.20 gi|219852499|ref|YP_002466931.1| - 0.0021 18.0 0.0 0.003 17.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Fer4_2 PF12797.2 gi|219852499|ref|YP_002466931.1| - 0.0022 17.7 1.5 0.0022 17.7 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain PLAC8 PF04749.12 gi|219852499|ref|YP_002466931.1| - 0.017 15.6 2.6 0.034 14.7 1.8 1.4 1 0 0 1 1 1 0 PLAC8 family Fer4_18 PF13746.1 gi|219852499|ref|YP_002466931.1| - 0.019 15.3 2.2 0.019 15.3 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852499|ref|YP_002466931.1| - 0.044 14.1 3.5 0.044 14.1 2.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852499|ref|YP_002466931.1| - 0.048 13.5 4.7 0.048 13.5 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_4 PF12682.2 gi|219852499|ref|YP_002466931.1| - 0.14 11.5 0.0 2.1 7.6 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin Fer4_3 PF12798.2 gi|219852499|ref|YP_002466931.1| - 1.5 9.5 22.8 2.7 8.7 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain COesterase PF00135.23 gi|219852500|ref|YP_002466932.1| - 2.3e-116 389.6 0.0 2.8e-116 389.3 0.0 1.0 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.8 gi|219852500|ref|YP_002466932.1| - 3.3e-07 30.0 1.2 5e-06 26.2 0.8 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|219852500|ref|YP_002466932.1| - 7.9e-06 25.6 0.0 1.5e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|219852500|ref|YP_002466932.1| - 0.00013 21.2 0.1 0.00026 20.2 0.1 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family LTD PF00932.14 gi|219852501|ref|YP_002466933.1| - 3.1e-14 53.0 2.9 3.1e-14 53.0 2.0 1.7 2 0 0 2 2 2 1 Lamin Tail Domain Yip1 PF04893.12 gi|219852503|ref|YP_002466935.1| - 2.8e-17 62.7 18.0 2.8e-17 62.7 12.5 1.3 1 1 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|219852503|ref|YP_002466935.1| - 4e-05 23.3 10.6 6.9e-05 22.5 7.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Methyltrn_RNA_4 PF09936.4 gi|219852503|ref|YP_002466935.1| - 0.092 12.2 0.3 3.7 7.0 0.0 2.2 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase Yip1 PF04893.12 gi|219852504|ref|YP_002466936.1| - 9.3e-14 51.2 24.1 1.3e-13 50.8 16.7 1.2 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|219852504|ref|YP_002466936.1| - 0.00084 19.0 14.1 0.0014 18.3 9.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF4519 PF15012.1 gi|219852504|ref|YP_002466936.1| - 0.034 14.0 0.7 0.034 14.0 0.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) DUF3377 PF11857.3 gi|219852504|ref|YP_002466936.1| - 0.19 11.3 1.6 0.4 10.3 1.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) DUF3923 PF13061.1 gi|219852504|ref|YP_002466936.1| - 0.49 10.2 8.3 0.27 11.1 0.2 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3923) DUF512 PF04459.7 gi|219852505|ref|YP_002466937.1| - 5.2e-23 81.1 0.0 7.2e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|219852505|ref|YP_002466937.1| - 5.1e-14 52.7 1.5 8.8e-13 48.7 1.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily ATP-grasp_5 PF13549.1 gi|219852506|ref|YP_002466938.1| - 1.5e-62 210.7 0.0 2.2e-62 210.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|219852506|ref|YP_002466938.1| - 2.4e-47 159.9 0.5 5.1e-47 158.9 0.1 1.7 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|219852506|ref|YP_002466938.1| - 5.9e-26 90.9 0.4 2.3e-25 89.0 0.3 2.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|219852506|ref|YP_002466938.1| - 3.9e-10 40.0 0.4 1.8e-09 37.9 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|219852506|ref|YP_002466938.1| - 6e-07 29.3 0.1 3.4e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|219852506|ref|YP_002466938.1| - 0.0021 17.4 0.0 0.0046 16.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|219852506|ref|YP_002466938.1| - 0.029 13.8 0.0 0.077 12.4 0.0 1.7 1 0 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|219852506|ref|YP_002466938.1| - 0.085 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain E1-E2_ATPase PF00122.15 gi|219852507|ref|YP_002466939.1| - 1.7e-64 216.9 3.7 4.1e-64 215.7 2.6 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|219852507|ref|YP_002466939.1| - 1.1e-39 135.8 3.7 1.1e-39 135.8 2.6 2.3 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|219852507|ref|YP_002466939.1| - 5.8e-32 111.8 0.5 2.8e-31 109.5 0.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|219852507|ref|YP_002466939.1| - 4.4e-20 70.8 0.1 3.9e-19 67.8 0.0 2.4 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|219852507|ref|YP_002466939.1| - 1.3e-14 54.8 0.0 3.3e-14 53.4 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|219852507|ref|YP_002466939.1| - 1.8e-11 43.8 0.0 4e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|219852507|ref|YP_002466939.1| - 4.9e-10 39.4 0.3 3.5e-05 23.5 0.2 2.7 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase DUF2115 PF09888.4 gi|219852508|ref|YP_002466940.1| - 2.8e-42 144.6 0.0 3.5e-42 144.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) CarbpepA_inh PF02977.10 gi|219852508|ref|YP_002466940.1| - 0.12 11.9 0.4 0.26 10.8 0.3 1.5 1 0 0 1 1 1 0 Carboxypeptidase A inhibitor COG2 PF06148.6 gi|219852508|ref|YP_002466940.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1887 PF09002.6 gi|219852508|ref|YP_002466940.1| - 0.13 10.6 0.0 0.22 9.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1887) Abhydrolase_6 PF12697.2 gi|219852509|ref|YP_002466941.1| - 1.1e-35 123.5 4.7 1.4e-35 123.2 3.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|219852509|ref|YP_002466941.1| - 2.5e-19 69.7 0.0 3.4e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|219852509|ref|YP_002466941.1| - 5.5e-13 48.9 0.0 7.2e-12 45.2 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|219852509|ref|YP_002466941.1| - 0.0066 16.6 0.3 0.012 15.8 0.1 1.5 1 1 0 1 1 1 1 Thioesterase domain ABC_ATPase PF09818.4 gi|219852510|ref|YP_002466942.1| - 1.8e-63 214.6 0.0 2.4e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|219852510|ref|YP_002466942.1| - 1.7e-05 25.1 0.1 0.00012 22.4 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.1 gi|219852510|ref|YP_002466942.1| - 0.002 17.6 0.1 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|219852510|ref|YP_002466942.1| - 0.0068 16.0 0.0 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|219852510|ref|YP_002466942.1| - 0.01 15.9 0.0 0.034 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|219852510|ref|YP_002466942.1| - 0.018 14.4 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|219852510|ref|YP_002466942.1| - 0.044 14.1 0.0 0.071 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|219852510|ref|YP_002466942.1| - 0.051 12.8 0.0 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SBP_bac_3 PF00497.15 gi|219852511|ref|YP_002466943.1| - 4.6e-40 137.2 0.5 5.8e-19 68.2 0.0 2.0 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 DUF1996 PF09362.5 gi|219852511|ref|YP_002466943.1| - 0.01 15.5 0.2 0.44 10.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1996) OpuAC PF04069.7 gi|219852511|ref|YP_002466943.1| - 0.078 12.3 0.1 0.31 10.3 0.0 2.0 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.15 gi|219852513|ref|YP_002466945.1| - 1.7e-35 122.3 0.8 2.3e-17 63.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cache_2 PF08269.6 gi|219852513|ref|YP_002466945.1| - 8.3e-07 28.8 0.1 2.5e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Cache domain PocR PF10114.4 gi|219852514|ref|YP_002466946.1| - 5e-56 188.5 0.0 1.1e-55 187.4 0.0 1.6 1 0 0 1 1 1 1 Sensory domain found in PocR PAS_4 PF08448.5 gi|219852514|ref|YP_002466946.1| - 3.8e-32 110.6 0.0 2.5e-21 75.7 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|219852514|ref|YP_002466946.1| - 2.5e-25 88.8 0.1 3.2e-11 43.5 0.1 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219852514|ref|YP_002466946.1| - 4.3e-23 81.2 0.0 4.2e-10 39.4 0.0 3.6 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|219852514|ref|YP_002466946.1| - 3.9e-20 71.9 0.0 9.7e-20 70.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219852514|ref|YP_002466946.1| - 4.3e-14 52.1 0.2 1.1e-13 50.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|219852514|ref|YP_002466946.1| - 2.8e-09 36.4 0.0 0.00076 19.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|219852514|ref|YP_002466946.1| - 2.1e-07 30.9 0.1 0.019 15.0 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|219852514|ref|YP_002466946.1| - 0.00099 19.3 0.1 0.0044 17.2 0.1 2.1 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|219852514|ref|YP_002466946.1| - 0.0022 17.9 0.4 2.7 8.0 0.0 4.1 3 1 0 3 3 3 1 PAS fold PAS_11 PF14598.1 gi|219852514|ref|YP_002466946.1| - 0.019 14.9 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.1 gi|219852514|ref|YP_002466946.1| - 0.026 14.1 0.2 0.077 12.5 0.1 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF2884 PF11101.3 gi|219852514|ref|YP_002466946.1| - 0.041 13.2 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) 4HB_MCP_1 PF12729.2 gi|219852514|ref|YP_002466946.1| - 0.042 13.2 3.0 0.1 11.9 2.1 1.6 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction V_ATPase_I PF01496.14 gi|219852514|ref|YP_002466946.1| - 0.14 10.0 0.6 0.22 9.3 0.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|219852514|ref|YP_002466946.1| - 0.28 10.1 3.5 0.51 9.3 2.4 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 V-SNARE_C PF12352.3 gi|219852514|ref|YP_002466946.1| - 0.74 9.9 5.0 0.62 10.1 1.7 2.1 2 0 0 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus DUF3552 PF12072.3 gi|219852514|ref|YP_002466946.1| - 0.79 8.8 8.0 1.6 7.8 5.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TBPIP PF07106.8 gi|219852514|ref|YP_002466946.1| - 0.81 9.2 4.3 1.6 8.2 2.9 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NosD PF05048.8 gi|219852515|ref|YP_002466947.1| - 3.2e-49 167.2 32.5 1.2e-48 165.3 22.5 1.9 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|219852515|ref|YP_002466947.1| - 1e-36 124.4 39.0 7e-17 60.9 2.7 4.9 5 1 1 6 6 6 3 PKD domain CBM_6 PF03422.10 gi|219852515|ref|YP_002466947.1| - 2.4e-23 82.6 1.5 2.4e-23 82.6 1.0 4.8 3 2 1 4 4 4 1 Carbohydrate binding module (family 6) Beta_helix PF13229.1 gi|219852515|ref|YP_002466947.1| - 3e-20 72.5 29.2 8e-20 71.1 20.2 1.8 1 0 0 1 1 1 1 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|219852515|ref|YP_002466947.1| - 2.9e-06 27.5 17.2 2.9e-06 27.5 12.0 2.5 2 1 0 2 2 2 1 Pectate lyase superfamily protein DUF1918 PF08940.6 gi|219852515|ref|YP_002466947.1| - 0.032 13.5 0.0 2 7.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) ThiC-associated PF13667.1 gi|219852515|ref|YP_002466947.1| - 2.3 7.8 4.1 38 3.9 0.2 3.1 3 0 0 3 3 3 0 ThiC-associated domain MSP1_C PF07462.6 gi|219852515|ref|YP_002466947.1| - 3.6 5.8 2.8 5.7 5.2 1.9 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus DUF2115 PF09888.4 gi|219852518|ref|YP_002466950.1| - 6.2e-47 159.7 0.0 7.3e-47 159.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HATPase_c_2 PF13581.1 gi|219852519|ref|YP_002466951.1| - 2.3e-22 79.0 0.0 4.7e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.21 gi|219852519|ref|YP_002466951.1| - 1.3e-06 28.0 0.0 2.2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acetyltransf_1 PF00583.19 gi|219852519|ref|YP_002466951.1| - 7.6e-05 22.6 0.0 0.0051 16.8 0.0 2.8 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|219852519|ref|YP_002466951.1| - 0.13 12.2 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.23 gi|219852520|ref|YP_002466952.1| - 5.9e-10 38.0 0.0 2.1e-09 36.3 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C_2 PF14535.1 gi|219852520|ref|YP_002466952.1| - 0.0019 18.2 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GH3 PF03321.8 gi|219852520|ref|YP_002466952.1| - 0.24 9.8 0.0 0.41 9.1 0.0 1.3 1 0 0 1 1 1 0 GH3 auxin-responsive promoter LuxC PF05893.9 gi|219852521|ref|YP_002466953.1| - 9.6e-82 274.8 0.0 1.4e-81 274.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) AMP-binding PF00501.23 gi|219852521|ref|YP_002466953.1| - 2.7e-10 39.2 0.0 4.3e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme CBM_19 PF03427.8 gi|219852521|ref|YP_002466953.1| - 0.71 9.6 2.3 0.55 10.0 0.1 1.9 2 0 0 2 2 2 0 Carbohydrate binding domain (family 19) LuxE PF04443.7 gi|219852522|ref|YP_002466954.1| - 9.4e-42 142.9 0.0 1.2e-41 142.6 0.0 1.1 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE MFS_3 PF05977.8 gi|219852523|ref|YP_002466955.1| - 2.8e-29 101.6 26.0 3.2e-29 101.4 18.0 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|219852523|ref|YP_002466955.1| - 2.7e-21 75.6 67.5 1.6e-20 73.1 33.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily HATPase_c_2 PF13581.1 gi|219852524|ref|YP_002466956.1| - 4.5e-27 94.3 0.0 5e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.21 gi|219852524|ref|YP_002466956.1| - 7.6e-06 25.6 0.0 1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STAS_2 PF13466.1 gi|219852525|ref|YP_002466957.1| - 1.3e-14 53.9 2.3 1.6e-14 53.6 1.6 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.16 gi|219852525|ref|YP_002466957.1| - 1e-11 44.2 0.0 1.2e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 STAS domain DUF2106 PF09879.4 gi|219852525|ref|YP_002466957.1| - 0.018 14.4 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) SpoIIE PF07228.7 gi|219852526|ref|YP_002466958.1| - 7.2e-53 179.1 0.1 1.1e-52 178.5 0.1 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.7 gi|219852526|ref|YP_002466958.1| - 7.4e-35 119.7 14.1 7.4e-35 119.7 9.8 1.7 2 0 0 2 2 2 1 5TMR of 5TMR-LYT ECF-ribofla_trS PF07155.7 gi|219852526|ref|YP_002466958.1| - 0.0027 17.4 11.1 0.0027 17.4 7.7 2.1 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|219852526|ref|YP_002466958.1| - 0.39 10.6 11.2 0.53 10.1 6.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) Lon_C PF05362.8 gi|219852528|ref|YP_002466960.1| - 2.2e-17 63.0 0.5 4.7e-17 61.9 0.4 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain CCDC144C PF14915.1 gi|219852528|ref|YP_002466960.1| - 0.048 12.5 1.3 0.072 11.9 0.9 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region DUF2316 PF10078.4 gi|219852528|ref|YP_002466960.1| - 0.14 12.1 0.4 0.3 11.1 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) bZIP_2 PF07716.10 gi|219852528|ref|YP_002466960.1| - 2 8.3 5.0 0.38 10.5 0.7 1.7 2 0 0 2 2 2 0 Basic region leucine zipper Thioredoxin PF00085.15 gi|219852529|ref|YP_002466961.1| - 9.4e-19 67.0 0.0 1.2e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|219852529|ref|YP_002466961.1| - 2e-07 31.1 0.2 4.2e-06 26.9 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_6 PF13848.1 gi|219852529|ref|YP_002466961.1| - 0.00048 19.9 0.0 0.00065 19.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|219852529|ref|YP_002466961.1| - 0.00061 19.5 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|219852529|ref|YP_002466961.1| - 0.005 16.7 0.0 0.0087 15.9 0.0 1.6 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.1 gi|219852529|ref|YP_002466961.1| - 0.014 15.3 0.5 0.19 11.7 0.1 2.2 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_8 PF13905.1 gi|219852529|ref|YP_002466961.1| - 0.059 13.4 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.16 gi|219852529|ref|YP_002466961.1| - 0.066 12.9 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family AsnC_trans_reg PF01037.16 gi|219852530|ref|YP_002466962.1| - 1.5e-09 37.4 0.1 1.6e-09 37.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|219852530|ref|YP_002466962.1| - 0.0031 17.2 0.1 0.0033 17.0 0.1 1.2 1 0 0 1 1 1 1 GYD domain HHH_5 PF14520.1 gi|219852530|ref|YP_002466962.1| - 0.0046 17.0 0.3 0.0072 16.4 0.2 1.3 1 1 0 1 1 1 1 Helix-hairpin-helix domain ThiI PF02568.9 gi|219852530|ref|YP_002466962.1| - 0.0084 15.5 0.1 0.0091 15.4 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Spt5-NGN PF03439.8 gi|219852530|ref|YP_002466962.1| - 0.01 15.5 0.3 3.5 7.4 0.1 2.0 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section NapD PF03927.8 gi|219852530|ref|YP_002466962.1| - 0.069 12.9 0.6 0.1 12.4 0.4 1.3 1 1 0 1 1 1 0 NapD protein HMA PF00403.21 gi|219852530|ref|YP_002466962.1| - 0.1 12.7 2.7 0.27 11.3 1.9 1.8 1 1 0 1 1 1 0 Heavy-metal-associated domain HHH PF00633.18 gi|219852530|ref|YP_002466962.1| - 0.12 12.0 0.0 0.34 10.7 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif ThiI PF02568.9 gi|219852533|ref|YP_002466965.1| - 3.6e-68 228.9 0.0 4.1e-68 228.7 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|219852533|ref|YP_002466965.1| - 7.7e-05 22.0 0.0 0.015 14.6 0.0 2.6 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|219852533|ref|YP_002466965.1| - 0.00011 20.8 0.0 0.00022 19.9 0.0 1.5 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|219852533|ref|YP_002466965.1| - 0.00033 20.1 0.0 0.0081 15.6 0.0 2.1 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|219852533|ref|YP_002466965.1| - 0.0057 15.5 0.0 0.03 13.2 0.0 2.0 2 0 0 2 2 2 1 NAD synthase Pox_RNA_Pol_19 PF05320.7 gi|219852534|ref|YP_002466966.1| - 0.0096 15.6 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit ThiF PF00899.16 gi|219852535|ref|YP_002466967.1| - 7.5e-44 148.8 0.3 1.2e-43 148.2 0.2 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|219852535|ref|YP_002466967.1| - 1.2e-18 66.4 0.3 2.7e-18 65.3 0.2 1.6 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|219852535|ref|YP_002466967.1| - 6e-05 23.1 0.2 6e-05 23.1 0.2 1.9 2 1 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|219852535|ref|YP_002466967.1| - 0.00014 21.8 0.2 0.00025 21.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|219852535|ref|YP_002466967.1| - 0.00057 19.5 0.1 0.00093 18.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|219852535|ref|YP_002466967.1| - 0.0009 18.2 0.1 0.0012 17.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|219852535|ref|YP_002466967.1| - 0.0052 16.6 0.1 0.0081 16.0 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|219852535|ref|YP_002466967.1| - 0.0058 16.0 0.0 0.0096 15.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|219852535|ref|YP_002466967.1| - 0.013 14.5 0.1 0.018 14.0 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|219852535|ref|YP_002466967.1| - 0.023 14.9 0.1 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|219852535|ref|YP_002466967.1| - 0.037 13.0 0.1 0.056 12.4 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.12 gi|219852535|ref|YP_002466967.1| - 0.043 14.2 0.1 0.12 12.8 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|219852535|ref|YP_002466967.1| - 0.054 12.6 0.0 0.091 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|219852535|ref|YP_002466967.1| - 0.055 13.3 0.1 0.092 12.6 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase KR PF08659.5 gi|219852535|ref|YP_002466967.1| - 0.085 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 KR domain Aminotran_5 PF00266.14 gi|219852536|ref|YP_002466968.1| - 1.1e-129 432.3 0.0 1.3e-129 432.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219852536|ref|YP_002466968.1| - 4.8e-10 39.0 0.0 6.4e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|219852536|ref|YP_002466968.1| - 8.6e-08 31.5 0.0 1.2e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219852536|ref|YP_002466968.1| - 5.9e-07 28.8 0.0 9e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|219852536|ref|YP_002466968.1| - 5.2e-05 21.7 0.0 0.00016 20.0 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SLA_LP_auto_ag PF05889.8 gi|219852536|ref|YP_002466968.1| - 0.085 11.3 0.0 0.15 10.4 0.0 1.4 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DUF362 PF04015.7 gi|219852538|ref|YP_002466970.1| - 4.7e-58 196.0 0.0 6.1e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|219852538|ref|YP_002466970.1| - 1e-08 34.3 17.0 1.5e-05 24.3 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852538|ref|YP_002466970.1| - 2.3e-07 30.3 18.1 0.00076 19.2 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852538|ref|YP_002466970.1| - 6.8e-07 28.9 16.0 1.1e-06 28.3 11.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852538|ref|YP_002466970.1| - 1.8e-06 28.1 16.1 3e-06 27.3 11.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852538|ref|YP_002466970.1| - 6e-06 26.5 15.7 1.1e-05 25.6 10.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852538|ref|YP_002466970.1| - 5.5e-05 22.9 12.5 0.00011 21.9 8.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852538|ref|YP_002466970.1| - 0.00084 20.0 15.7 0.03 15.0 3.4 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|219852538|ref|YP_002466970.1| - 0.001 18.8 19.3 0.0022 17.7 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852538|ref|YP_002466970.1| - 0.0013 19.2 15.1 0.056 14.0 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219852538|ref|YP_002466970.1| - 0.0016 18.4 18.9 0.017 15.1 13.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219852538|ref|YP_002466970.1| - 0.035 14.4 17.2 0.69 10.3 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|219852538|ref|YP_002466970.1| - 0.04 14.2 3.2 0.04 14.2 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852538|ref|YP_002466970.1| - 0.4 11.0 17.5 1.4 9.3 2.9 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852538|ref|YP_002466970.1| - 5.6 7.7 22.9 3.2 8.5 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DisA_N PF02457.11 gi|219852539|ref|YP_002466971.1| - 2.9e-22 78.1 0.2 5.3e-22 77.2 0.0 1.5 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding CoA_binding PF02629.14 gi|219852540|ref|YP_002466972.1| - 1.5e-21 76.6 2.2 4.2e-21 75.2 0.3 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|219852540|ref|YP_002466972.1| - 4.2e-13 49.1 0.4 2.4e-12 46.7 0.3 2.0 1 1 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|219852540|ref|YP_002466972.1| - 3.4e-10 39.6 0.1 1.1e-09 38.0 0.0 1.9 2 1 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|219852540|ref|YP_002466972.1| - 4.2e-08 33.3 0.5 2e-07 31.1 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|219852541|ref|YP_002466973.1| - 1.9e-44 151.4 0.0 3.2e-44 150.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|219852541|ref|YP_002466973.1| - 3.7e-12 46.0 2.6 6.2e-12 45.3 1.6 1.5 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|219852541|ref|YP_002466973.1| - 1.5e-09 37.4 1.7 2.2e-09 36.8 0.1 2.0 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|219852541|ref|YP_002466973.1| - 0.0043 16.8 0.0 0.0077 15.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|219852541|ref|YP_002466973.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain POR PF01558.13 gi|219852542|ref|YP_002466974.1| - 3.2e-27 95.5 0.3 3.8e-27 95.2 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|219852543|ref|YP_002466975.1| - 8.9e-39 132.5 0.2 1.3e-38 132.0 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|219852544|ref|YP_002466976.1| - 4.4e-75 252.1 2.0 5.5e-75 251.8 1.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|219852544|ref|YP_002466976.1| - 2.7e-05 23.7 0.2 6e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|219852544|ref|YP_002466976.1| - 0.019 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain Fer4_7 PF12838.2 gi|219852545|ref|YP_002466977.1| - 1.4e-13 50.9 7.8 1.9e-08 34.5 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852545|ref|YP_002466977.1| - 5.3e-12 44.8 10.5 4.2e-07 29.2 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852545|ref|YP_002466977.1| - 8.6e-11 41.4 10.6 2.3e-07 30.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852545|ref|YP_002466977.1| - 7.5e-10 38.1 12.1 2.3e-07 30.3 1.0 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852545|ref|YP_002466977.1| - 2.8e-09 36.4 15.6 7.6e-07 28.7 1.0 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852545|ref|YP_002466977.1| - 1.7e-06 27.7 12.8 0.00036 20.3 2.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852545|ref|YP_002466977.1| - 1.8e-05 24.6 10.6 0.0067 16.4 3.8 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852545|ref|YP_002466977.1| - 2.9e-05 24.7 12.1 0.00034 21.2 8.3 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219852545|ref|YP_002466977.1| - 5.8e-05 23.2 14.5 0.0024 18.0 10.5 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852545|ref|YP_002466977.1| - 8.1e-05 22.6 20.2 0.0012 19.0 2.6 3.1 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|219852545|ref|YP_002466977.1| - 0.00028 20.7 7.5 0.00066 19.5 5.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852545|ref|YP_002466977.1| - 0.00069 20.1 0.7 0.00069 20.1 0.5 2.7 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|219852545|ref|YP_002466977.1| - 0.0016 18.7 14.2 0.0065 16.8 9.9 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219852545|ref|YP_002466977.1| - 0.0061 16.9 10.5 0.029 14.7 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219852545|ref|YP_002466977.1| - 0.02 15.3 1.6 0.02 15.3 1.1 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852545|ref|YP_002466977.1| - 0.2 12.3 16.6 0.4 11.3 2.6 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain zf-trcl PF13451.1 gi|219852545|ref|YP_002466977.1| - 0.4 10.3 6.2 3.1 7.4 4.3 2.3 1 1 0 1 1 1 0 Probable zinc-binding domain Fumerase_C PF05683.7 gi|219852546|ref|YP_002466978.1| - 4e-41 140.4 0.1 4.6e-41 140.2 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|219852547|ref|YP_002466979.1| - 2.5e-86 289.1 0.1 2.9e-86 288.9 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Cation_efflux PF01545.16 gi|219852549|ref|YP_002466981.1| - 4.4e-58 196.6 9.0 5.3e-58 196.3 6.2 1.0 1 0 0 1 1 1 1 Cation efflux family Ppx-GppA PF02541.11 gi|219852550|ref|YP_002466982.1| - 1.3e-56 191.8 0.0 1.8e-56 191.4 0.0 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HD PF01966.17 gi|219852550|ref|YP_002466982.1| - 0.0002 21.3 0.2 0.0005 20.0 0.1 1.7 1 0 0 1 1 1 1 HD domain FtsA PF14450.1 gi|219852550|ref|YP_002466982.1| - 0.00052 19.8 3.3 0.63 9.8 0.0 3.4 3 1 0 3 3 3 2 Cell division protein FtsA Roughex PF06020.6 gi|219852550|ref|YP_002466982.1| - 0.16 10.6 0.3 0.35 9.4 0.0 1.6 2 0 0 2 2 2 0 Drosophila roughex protein CHAD PF05235.9 gi|219852551|ref|YP_002466983.1| - 8.2e-49 166.2 0.8 8.2e-49 166.2 0.5 1.7 2 0 0 2 2 2 1 CHAD domain Metallophos_2 PF12850.2 gi|219852551|ref|YP_002466983.1| - 3.5e-27 95.1 0.0 2.5e-25 89.1 0.0 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|219852551|ref|YP_002466983.1| - 2.2e-09 37.0 0.0 5e-08 32.5 0.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OST-HTH PF12872.2 gi|219852551|ref|YP_002466983.1| - 0.067 13.0 0.0 0.33 10.8 0.0 2.2 1 0 0 1 1 1 0 OST-HTH/LOTUS domain Peripla_BP_2 PF01497.13 gi|219852551|ref|YP_002466983.1| - 0.15 11.1 0.0 0.36 9.9 0.0 1.6 1 0 0 1 1 1 0 Periplasmic binding protein PP_kinase_C PF13090.1 gi|219852552|ref|YP_002466984.1| - 1.6e-146 487.4 0.0 2e-146 487.1 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|219852552|ref|YP_002466984.1| - 4.4e-61 205.9 0.0 2.9e-60 203.3 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|219852552|ref|YP_002466984.1| - 2.5e-33 114.4 0.0 5.4e-33 113.3 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|219852552|ref|YP_002466984.1| - 1.7e-10 40.6 0.0 2e-05 24.3 0.0 3.1 3 1 0 3 3 3 2 PLD-like domain RE_NgoFVII PF09565.5 gi|219852552|ref|YP_002466984.1| - 0.0058 15.6 0.0 0.028 13.3 0.0 1.9 2 0 0 2 2 2 1 NgoFVII restriction endonuclease PP_kinase_C PF13090.1 gi|219852553|ref|YP_002466985.1| - 4.2e-155 515.6 0.0 5.4e-155 515.3 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|219852553|ref|YP_002466985.1| - 2.3e-65 219.9 0.8 2.7e-65 219.7 0.0 1.5 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|219852553|ref|YP_002466985.1| - 4.7e-37 126.4 0.1 8.3e-37 125.6 0.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|219852553|ref|YP_002466985.1| - 1.5e-09 37.6 0.0 0.00011 21.9 0.0 2.6 2 1 0 2 2 2 2 PLD-like domain NHL PF01436.16 gi|219852554|ref|YP_002466986.1| - 5.1e-44 146.0 17.9 3.5e-08 32.9 0.1 6.6 6 0 0 6 6 6 6 NHL repeat PKD PF00801.15 gi|219852554|ref|YP_002466986.1| - 7.8e-37 124.8 23.2 2.8e-16 59.0 1.3 3.8 3 0 0 3 3 3 3 PKD domain CBM_6 PF03422.10 gi|219852554|ref|YP_002466986.1| - 1.1e-19 70.7 3.5 1.1e-19 70.7 2.4 4.4 2 2 0 3 3 3 1 Carbohydrate binding module (family 6) SGL PF08450.7 gi|219852554|ref|YP_002466986.1| - 3.8e-14 52.6 3.9 0.00057 19.3 0.1 5.2 1 1 4 5 5 5 5 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852554|ref|YP_002466986.1| - 4.1e-05 23.2 21.1 0.21 11.3 0.1 6.4 6 0 0 6 6 6 3 Beta-propeller repeat Arylesterase PF01731.15 gi|219852554|ref|YP_002466986.1| - 0.014 15.3 0.0 12 5.9 0.0 3.6 3 0 0 3 3 3 0 Arylesterase DUF1918 PF08940.6 gi|219852554|ref|YP_002466986.1| - 0.035 13.4 0.4 4.4 6.7 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) PKD PF00801.15 gi|219852555|ref|YP_002466987.1| - 2.4e-37 126.5 54.3 7e-12 44.9 1.4 6.4 7 1 0 7 7 7 4 PKD domain CBM_6 PF03422.10 gi|219852555|ref|YP_002466987.1| - 2e-26 92.5 3.0 2e-26 92.5 2.1 5.4 5 2 1 6 6 6 1 Carbohydrate binding module (family 6) DUF4480 PF13715.1 gi|219852555|ref|YP_002466987.1| - 3.9e-12 46.0 6.9 5.3e-07 29.6 0.0 4.5 4 1 0 4 4 4 2 Domain of unknown function (DUF4480) DUF4399 PF14347.1 gi|219852555|ref|YP_002466987.1| - 0.0076 16.2 0.1 1.3 9.1 0.0 3.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4399) DUF1918 PF08940.6 gi|219852555|ref|YP_002466987.1| - 0.047 13.0 0.0 3.9 6.8 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) Mut7-C PF01927.11 gi|219852556|ref|YP_002466988.1| - 3.6e-32 111.3 0.0 4.1e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-RING_3 PF14369.1 gi|219852556|ref|YP_002466988.1| - 0.026 14.5 4.8 0.3 11.0 1.7 2.4 2 0 0 2 2 2 0 zinc-finger Radical_SAM PF04055.16 gi|219852557|ref|YP_002466989.1| - 4.6e-18 65.9 0.0 1.5e-17 64.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219852557|ref|YP_002466989.1| - 3.1e-05 24.1 0.0 6.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.7 gi|219852557|ref|YP_002466989.1| - 0.72 9.2 4.0 11 5.4 0.0 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding AA_kinase PF00696.23 gi|219852558|ref|YP_002466990.1| - 8.4e-23 81.1 3.4 1e-22 80.8 2.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family HhH-GPD PF00730.20 gi|219852559|ref|YP_002466991.1| - 4.1e-23 81.7 0.0 5.3e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|219852559|ref|YP_002466991.1| - 5.4e-07 28.9 0.1 1.4e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|219852559|ref|YP_002466991.1| - 8e-05 22.7 0.5 0.17 12.0 0.0 2.5 2 1 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|219852559|ref|YP_002466991.1| - 0.00012 22.0 1.8 0.00012 22.0 1.2 1.7 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III PHO4 PF01384.15 gi|219852560|ref|YP_002466992.1| - 4.1e-97 324.7 51.9 5.9e-62 209.2 15.2 2.1 1 1 1 2 2 2 2 Phosphate transporter family Rick_17kDa_Anti PF05433.10 gi|219852560|ref|YP_002466992.1| - 1.9 8.2 8.6 11 5.7 1.0 2.9 2 0 0 2 2 2 0 Glycine zipper 2TM domain Myc_target_1 PF15179.1 gi|219852560|ref|YP_002466992.1| - 6.5 6.2 7.1 27 4.2 0.1 2.3 2 0 0 2 2 2 0 Myc target protein 1 Gly-zipper_Omp PF13488.1 gi|219852560|ref|YP_002466992.1| - 9.6 5.9 12.2 1.6 8.4 0.6 2.9 3 0 0 3 3 3 0 Glycine zipper PhoU_div PF01865.11 gi|219852561|ref|YP_002466993.1| - 4e-22 78.4 1.5 5e-22 78.1 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|219852561|ref|YP_002466993.1| - 0.0041 17.5 2.0 0.95 9.9 0.2 2.4 1 1 0 2 2 2 2 PhoU domain UBN2 PF14223.1 gi|219852561|ref|YP_002466993.1| - 0.069 12.9 0.2 0.83 9.4 0.0 2.5 2 1 1 3 3 3 0 gag-polypeptide of LTR copia-type AP_endonuc_2 PF01261.19 gi|219852562|ref|YP_002466994.1| - 4.9e-23 81.5 0.1 6.3e-23 81.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ATP-grasp_5 PF13549.1 gi|219852563|ref|YP_002466995.1| - 5.3e-63 212.2 0.0 8.1e-63 211.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|219852563|ref|YP_002466995.1| - 1.7e-52 176.6 0.2 4.3e-52 175.3 0.1 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|219852563|ref|YP_002466995.1| - 4.2e-27 94.6 0.1 1.4e-26 92.9 0.1 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|219852563|ref|YP_002466995.1| - 1.4e-16 60.7 0.7 4.4e-16 59.1 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|219852563|ref|YP_002466995.1| - 0.00021 21.0 0.0 0.00039 20.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|219852563|ref|YP_002466995.1| - 0.032 13.6 0.1 0.062 12.6 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain RimK PF08443.6 gi|219852563|ref|YP_002466995.1| - 0.042 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|219852563|ref|YP_002466995.1| - 0.07 12.4 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain NosD PF05048.8 gi|219852564|ref|YP_002466996.1| - 1.1e-211 698.9 186.5 1.6e-42 145.2 19.4 7.3 5 1 2 7 7 7 7 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219852564|ref|YP_002466996.1| - 1.5e-75 252.2 252.0 1.6e-16 60.4 19.6 10.1 6 4 4 10 10 10 8 Right handed beta helix region PKD PF00801.15 gi|219852564|ref|YP_002466996.1| - 2.4e-21 75.2 28.7 6.1e-12 45.1 3.0 4.6 4 0 0 4 4 4 2 PKD domain LTD PF00932.14 gi|219852564|ref|YP_002466996.1| - 6.8e-17 61.6 5.2 6.8e-17 61.6 3.6 5.0 4 1 1 5 5 5 1 Lamin Tail Domain Pectate_lyase_3 PF12708.2 gi|219852564|ref|YP_002466996.1| - 0.00012 22.2 31.4 0.00079 19.6 7.2 8.8 8 1 1 9 9 9 6 Pectate lyase superfamily protein HupE_UreJ PF04955.7 gi|219852564|ref|YP_002466996.1| - 0.17 11.1 1.1 0.33 10.2 0.8 1.4 1 0 0 1 1 1 0 HupE / UreJ protein Rubredoxin PF00301.15 gi|219852565|ref|YP_002466997.1| - 2.1e-40 136.3 7.5 3.3e-20 71.6 0.9 2.1 2 0 0 2 2 2 2 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|219852565|ref|YP_002466997.1| - 0.00067 19.1 3.6 6.1 6.4 0.1 4.1 4 0 0 4 4 4 0 Sec23/Sec24 zinc finger zf-C2H2_4 PF13894.1 gi|219852565|ref|YP_002466997.1| - 0.001 19.2 7.7 4.7 7.7 0.0 4.1 4 0 0 4 4 4 1 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|219852565|ref|YP_002466997.1| - 0.001 18.3 10.1 0.2 10.9 0.2 4.1 4 0 0 4 4 4 1 TFIIB zinc-binding DZR PF12773.2 gi|219852565|ref|YP_002466997.1| - 0.0016 18.2 0.9 0.45 10.3 0.0 3.1 3 0 0 3 3 3 1 Double zinc ribbon zf-nanos PF05741.8 gi|219852565|ref|YP_002466997.1| - 0.0076 16.2 3.8 24 4.9 0.0 4.1 4 0 0 4 4 4 0 Nanos RNA binding domain zf-HIT PF04438.11 gi|219852565|ref|YP_002466997.1| - 0.017 14.7 12.6 4.4 7.0 0.5 4.1 4 0 0 4 4 4 0 HIT zinc finger Cys_rich_CPCC PF14206.1 gi|219852565|ref|YP_002466997.1| - 0.021 14.3 11.1 6.9 6.2 2.9 3.9 3 1 0 3 3 3 0 Cysteine-rich CPCC zf-Di19 PF05605.7 gi|219852565|ref|YP_002466997.1| - 0.023 14.8 5.4 8.7 6.5 0.0 3.5 4 0 0 4 4 3 0 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|219852565|ref|YP_002466997.1| - 0.025 14.8 13.3 1.8 8.9 0.4 4.0 4 0 0 4 4 4 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|219852565|ref|YP_002466997.1| - 0.043 13.6 7.9 14 5.5 0.2 3.9 3 1 1 4 4 4 0 Transposase zinc-ribbon domain DUF2602 PF10782.4 gi|219852565|ref|YP_002466997.1| - 0.066 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2602) OrfB_Zn_ribbon PF07282.6 gi|219852565|ref|YP_002466997.1| - 0.11 12.1 4.6 3.4 7.3 0.2 3.5 2 1 0 3 3 3 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|219852565|ref|YP_002466997.1| - 0.12 12.3 5.4 14 5.7 0.1 3.2 3 0 0 3 3 3 0 zinc-finger zf-C2H2_3 PF13878.1 gi|219852565|ref|YP_002466997.1| - 0.13 11.8 6.7 1.5 8.4 0.2 3.5 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO Auto_anti-p27 PF06677.7 gi|219852565|ref|YP_002466997.1| - 0.17 11.6 8.3 7.1 6.4 0.0 3.9 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cas_CXXC_CXXC PF09706.5 gi|219852565|ref|YP_002466997.1| - 0.19 11.9 7.4 10 6.3 0.2 3.9 4 1 0 4 4 4 0 CRISPR-associated protein (Cas_CXXC_CXXC) C1_3 PF07649.7 gi|219852565|ref|YP_002466997.1| - 0.21 11.6 13.4 0.79 9.8 0.1 4.1 4 0 0 4 4 4 0 C1-like domain DUF2296 PF10058.4 gi|219852565|ref|YP_002466997.1| - 0.21 11.3 7.8 2.4 7.9 0.1 3.8 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|219852565|ref|YP_002466997.1| - 0.28 11.1 8.9 12 5.9 0.1 4.0 4 0 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|219852565|ref|YP_002466997.1| - 0.37 10.5 9.6 5.5 6.7 0.2 4.1 4 0 0 4 4 4 0 Nudix N-terminal zf-C2H2 PF00096.21 gi|219852565|ref|YP_002466997.1| - 0.39 11.1 13.6 10 6.7 0.2 4.1 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-Mss51 PF13824.1 gi|219852565|ref|YP_002466997.1| - 0.56 10.1 7.0 15 5.5 1.2 3.8 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 Desulfoferrod_N PF06397.7 gi|219852565|ref|YP_002466997.1| - 1 8.8 13.1 0.24 10.7 0.3 3.5 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|219852565|ref|YP_002466997.1| - 1.5 8.8 15.3 11 6.1 0.1 4.1 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A2L_zn_ribbon PF08792.5 gi|219852565|ref|YP_002466997.1| - 2.3 7.7 14.0 24 4.5 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|219852565|ref|YP_002466997.1| - 3.9 7.9 7.1 36 4.8 0.1 3.7 4 0 0 4 4 4 0 DDE_Tnp_1-like zinc-ribbon Zn_Tnp_IS1 PF03811.8 gi|219852565|ref|YP_002466997.1| - 6.8 6.2 8.5 12 5.5 0.0 3.6 4 0 0 4 4 4 0 InsA N-terminal domain Prok-RING_4 PF14447.1 gi|219852565|ref|YP_002466997.1| - 7.1 6.2 9.6 6.4 6.4 0.7 3.2 3 1 0 3 3 3 0 Prokaryotic RING finger family 4 zf-RING_5 PF14634.1 gi|219852565|ref|YP_002466997.1| - 9 6.1 9.4 68 3.3 0.1 3.7 3 1 1 4 4 4 0 zinc-RING finger domain Radical_SAM_N PF08497.5 gi|219852566|ref|YP_002466998.1| - 3.3e-127 423.5 0.0 4.3e-127 423.2 0.0 1.1 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|219852566|ref|YP_002466998.1| - 3.7e-16 59.3 0.0 6.5e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|219852566|ref|YP_002466998.1| - 3.8e-13 49.9 0.0 1.1e-12 48.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Lactamase_B_2 PF12706.2 gi|219852567|ref|YP_002466999.1| - 2.6e-31 108.6 0.0 7.2e-31 107.2 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|219852567|ref|YP_002466999.1| - 2.1e-16 60.1 0.3 1.2e-14 54.4 0.2 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RmlD_sub_bind PF04321.12 gi|219852567|ref|YP_002466999.1| - 0.023 13.5 0.3 0.034 13.0 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain AP_endonuc_2 PF01261.19 gi|219852568|ref|YP_002467000.1| - 7.1e-21 74.4 0.2 8.7e-21 74.1 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_18 PF13238.1 gi|219852569|ref|YP_002467001.1| - 5.5e-09 36.4 0.0 7.2e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|219852569|ref|YP_002467001.1| - 1e-08 36.0 0.0 2.3e-08 34.8 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|219852569|ref|YP_002467001.1| - 4.6e-05 23.3 0.0 8.1e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|219852569|ref|YP_002467001.1| - 0.0042 16.9 0.0 0.0077 16.1 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase Cytidylate_kin2 PF13189.1 gi|219852569|ref|YP_002467001.1| - 0.11 12.4 0.1 3.1 7.6 0.1 2.2 1 1 0 1 1 1 0 Cytidylate kinase-like family Radical_SAM PF04055.16 gi|219852570|ref|YP_002467002.1| - 3.2e-16 59.9 0.0 4.4e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219852570|ref|YP_002467002.1| - 2.9e-07 30.7 0.0 4.7e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219852570|ref|YP_002467002.1| - 3.3e-06 27.1 0.0 8.7e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain ThiC PF01964.13 gi|219852571|ref|YP_002467003.1| - 9.5e-178 591.0 1.3 1.1e-177 590.8 0.9 1.0 1 0 0 1 1 1 1 ThiC family PKD PF00801.15 gi|219852572|ref|YP_002467004.1| - 2.4e-38 129.7 57.5 9.2e-16 57.3 2.0 6.6 6 2 1 7 7 7 4 PKD domain CBM_6 PF03422.10 gi|219852572|ref|YP_002467004.1| - 2e-27 95.8 2.8 2e-27 95.8 1.9 6.1 4 3 2 6 6 6 2 Carbohydrate binding module (family 6) DUF4480 PF13715.1 gi|219852572|ref|YP_002467004.1| - 2.4e-07 30.7 16.3 0.0007 19.5 0.1 5.4 5 1 0 5 5 5 2 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|219852572|ref|YP_002467004.1| - 3.3e-06 26.7 16.5 0.047 13.4 0.9 6.8 6 0 0 6 6 6 3 PEGA domain DUF4399 PF14347.1 gi|219852572|ref|YP_002467004.1| - 6.8e-05 22.8 0.2 0.47 10.5 0.0 3.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4399) DUF3244 PF11589.3 gi|219852572|ref|YP_002467004.1| - 0.02 14.5 0.0 12 5.6 0.0 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) DUF3359 PF11839.3 gi|219852574|ref|YP_002467006.1| - 1.5 9.1 6.6 0.65 10.3 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3359) Pro_isomerase PF00160.16 gi|219852575|ref|YP_002467007.1| - 3e-50 170.4 0.7 3e-50 170.4 0.5 1.4 2 0 0 2 2 2 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF4098 PF13345.1 gi|219852575|ref|YP_002467007.1| - 0.018 14.9 1.6 0.018 14.9 1.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4098) DUF3359 PF11839.3 gi|219852575|ref|YP_002467007.1| - 0.28 11.5 6.3 0.54 10.6 4.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) Pro_isomerase PF00160.16 gi|219852576|ref|YP_002467008.1| - 4.8e-50 169.7 0.5 5.4e-50 169.6 0.3 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TPR_11 PF13414.1 gi|219852577|ref|YP_002467009.1| - 1.1e-26 92.2 1.4 1.1e-15 57.0 0.3 2.1 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|219852577|ref|YP_002467009.1| - 2e-21 74.6 0.0 1.8e-06 27.2 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219852577|ref|YP_002467009.1| - 1e-20 71.8 0.0 5.2e-06 25.9 0.1 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219852577|ref|YP_002467009.1| - 1.2e-17 64.0 6.7 2.6e-11 43.8 1.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219852577|ref|YP_002467009.1| - 1.6e-15 55.6 0.0 0.0002 20.9 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219852577|ref|YP_002467009.1| - 1.3e-13 49.9 0.4 0.00013 21.9 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219852577|ref|YP_002467009.1| - 5.5e-13 48.6 1.1 3e-08 33.4 0.5 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219852577|ref|YP_002467009.1| - 3.5e-12 45.1 0.2 0.0014 18.3 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219852577|ref|YP_002467009.1| - 2.4e-11 43.2 4.2 0.00035 20.9 0.1 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|219852577|ref|YP_002467009.1| - 2.9e-11 43.5 1.7 5e-08 33.1 0.3 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219852577|ref|YP_002467009.1| - 1.8e-07 30.8 1.7 0.00099 18.9 0.2 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219852577|ref|YP_002467009.1| - 2.6e-06 27.5 1.3 2.4 8.8 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|219852577|ref|YP_002467009.1| - 9.1e-05 22.5 0.0 0.00083 19.4 0.0 1.9 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|219852577|ref|YP_002467009.1| - 9.5e-05 22.2 0.4 0.21 11.4 0.2 3.0 2 1 0 2 2 2 1 Domain of Unknown Function (DUF3856) Alkyl_sulf_dimr PF14863.1 gi|219852577|ref|YP_002467009.1| - 0.00011 22.4 0.1 0.00018 21.7 0.1 1.3 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation TPR_15 PF13429.1 gi|219852577|ref|YP_002467009.1| - 0.00056 19.0 0.3 0.37 9.8 0.1 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|219852577|ref|YP_002467009.1| - 0.001 19.0 7.2 0.014 15.2 0.6 2.6 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.13 gi|219852577|ref|YP_002467009.1| - 0.0014 18.5 2.2 0.0052 16.6 0.2 2.4 2 1 0 2 2 2 1 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|219852577|ref|YP_002467009.1| - 0.0024 17.7 4.9 0.59 10.1 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|219852577|ref|YP_002467009.1| - 0.0033 17.7 6.4 2.7 8.6 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|219852577|ref|YP_002467009.1| - 0.0087 16.0 2.5 0.03 14.3 0.6 2.2 1 1 1 2 2 2 1 Tetratrico peptide repeat BTAD PF03704.12 gi|219852577|ref|YP_002467009.1| - 0.021 15.1 0.6 0.065 13.5 0.1 1.7 1 1 1 2 2 2 0 Bacterial transcriptional activator domain Fis1_TPR_C PF14853.1 gi|219852577|ref|YP_002467009.1| - 0.028 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|219852577|ref|YP_002467009.1| - 0.084 11.6 0.1 1.7 7.2 0.0 1.9 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 TPR_3 PF07720.7 gi|219852577|ref|YP_002467009.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat FIVAR PF07554.8 gi|219852577|ref|YP_002467009.1| - 0.24 11.6 1.7 0.71 10.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised Sugar-binding Domain Transcrip_act PF04949.8 gi|219852578|ref|YP_002467010.1| - 0.022 14.4 0.9 0.025 14.2 0.6 1.1 1 0 0 1 1 1 0 Transcriptional activator Phage_HK97_TLTM PF06120.6 gi|219852578|ref|YP_002467010.1| - 0.024 13.9 0.0 0.025 13.9 0.0 1.0 1 0 0 1 1 1 0 Tail length tape measure protein BLOC1_2 PF10046.4 gi|219852578|ref|YP_002467010.1| - 0.075 13.1 0.2 0.075 13.1 0.1 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspB PF06667.7 gi|219852578|ref|YP_002467010.1| - 0.096 12.6 0.8 0.12 12.3 0.5 1.2 1 0 0 1 1 1 0 Phage shock protein B DNA_pol_delta_4 PF04081.8 gi|219852578|ref|YP_002467010.1| - 0.12 12.6 0.1 0.13 12.5 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase delta, subunit 4 PEP-utilisers_N PF05524.8 gi|219852578|ref|YP_002467010.1| - 0.12 12.1 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal DivIC PF04977.10 gi|219852578|ref|YP_002467010.1| - 0.13 11.7 0.7 0.19 11.2 0.5 1.2 1 0 0 1 1 1 0 Septum formation initiator Metal_resist PF13801.1 gi|219852579|ref|YP_002467011.1| - 0.014 15.3 0.6 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal resistance Claudin_3 PF06653.6 gi|219852579|ref|YP_002467011.1| - 0.019 14.7 3.5 0.024 14.3 2.4 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like NPV_P10 PF05531.7 gi|219852579|ref|YP_002467011.1| - 0.022 15.0 0.3 0.042 14.1 0.2 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DctQ PF04290.7 gi|219852579|ref|YP_002467011.1| - 0.045 13.5 7.5 0.053 13.2 4.8 1.4 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component PTS_EIIC PF02378.13 gi|219852579|ref|YP_002467011.1| - 0.053 12.3 8.5 0.11 11.3 5.9 1.5 1 1 0 1 1 1 0 Phosphotransferase system, EIIC BMFP PF04380.8 gi|219852579|ref|YP_002467011.1| - 0.078 13.1 0.2 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 Membrane fusogenic activity Virul_fac_BrkB PF03631.10 gi|219852579|ref|YP_002467011.1| - 0.14 11.4 7.5 0.18 11.1 5.2 1.1 1 0 0 1 1 1 0 Virulence factor BrkB DUF3112 PF11309.3 gi|219852579|ref|YP_002467011.1| - 0.21 11.3 2.9 0.26 11.0 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) DUF2730 PF10805.3 gi|219852579|ref|YP_002467011.1| - 0.24 11.1 2.1 0.34 10.6 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Yip1 PF04893.12 gi|219852579|ref|YP_002467011.1| - 0.27 10.7 6.9 0.36 10.3 4.8 1.1 1 0 0 1 1 1 0 Yip1 domain 7TM_GPCR_Srz PF10325.4 gi|219852579|ref|YP_002467011.1| - 0.36 9.8 6.6 0.41 9.7 4.5 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srz DUF4083 PF13314.1 gi|219852579|ref|YP_002467011.1| - 2.1 8.2 9.0 11 5.9 0.0 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4083) DUF4234 PF14018.1 gi|219852579|ref|YP_002467011.1| - 2.6 7.8 5.5 1.6 8.5 0.1 2.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4234) DUF4064 PF13273.1 gi|219852579|ref|YP_002467011.1| - 3 8.0 8.7 4.7 7.3 6.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) zf-DHHC PF01529.15 gi|219852579|ref|YP_002467011.1| - 6.4 6.1 5.5 8.4 5.7 3.8 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase HTH_5 PF01022.15 gi|219852580|ref|YP_002467012.1| - 1.1e-09 37.7 0.0 1.9e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|219852580|ref|YP_002467012.1| - 2.5e-07 29.9 0.2 3.9e-06 26.1 0.1 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219852580|ref|YP_002467012.1| - 8.9e-07 28.5 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|219852580|ref|YP_002467012.1| - 1.2e-05 24.9 0.0 2.2e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|219852580|ref|YP_002467012.1| - 9.7e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|219852580|ref|YP_002467012.1| - 0.0013 18.6 0.0 0.0043 17.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|219852580|ref|YP_002467012.1| - 0.0018 17.8 0.0 0.0074 15.9 0.0 2.0 2 1 0 2 2 2 1 Homeodomain-like domain DUF2250 PF10007.4 gi|219852580|ref|YP_002467012.1| - 0.02 14.8 0.0 0.033 14.0 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|219852580|ref|YP_002467012.1| - 0.03 14.0 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|219852580|ref|YP_002467012.1| - 0.038 13.9 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|219852580|ref|YP_002467012.1| - 0.054 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.1 gi|219852580|ref|YP_002467012.1| - 0.067 13.3 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix GntR PF00392.16 gi|219852580|ref|YP_002467012.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|219852580|ref|YP_002467012.1| - 0.097 12.2 0.0 0.23 11.0 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain Peptidase_M50 PF02163.17 gi|219852581|ref|YP_002467013.1| - 2.7e-09 36.2 18.8 1.8e-08 33.5 12.2 2.4 1 1 0 1 1 1 1 Peptidase family M50 CM_2 PF01817.16 gi|219852582|ref|YP_002467014.1| - 1.2e-17 63.7 5.5 1.3e-17 63.5 3.8 1.0 1 0 0 1 1 1 1 Chorismate mutase type II CENP-H PF05837.7 gi|219852582|ref|YP_002467014.1| - 0.11 12.6 0.2 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) PPK2 PF03976.9 gi|219852583|ref|YP_002467015.1| - 7.9e-145 480.0 5.6 8.3e-86 286.9 0.3 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.1 gi|219852583|ref|YP_002467015.1| - 0.00024 21.4 1.6 0.31 11.3 0.0 2.9 3 0 0 3 3 3 2 AAA domain DUF98 PF01947.11 gi|219852583|ref|YP_002467015.1| - 0.0017 18.1 0.1 0.066 12.9 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF98) FAM176 PF14851.1 gi|219852583|ref|YP_002467015.1| - 0.58 9.8 2.9 0.52 9.9 0.2 2.0 2 0 0 2 2 2 0 FAM176 family SUI1 PF01253.17 gi|219852584|ref|YP_002467016.1| - 1.8e-25 88.5 0.3 2.1e-25 88.3 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|219852584|ref|YP_002467016.1| - 0.064 12.4 0.7 0.084 12.0 0.5 1.1 1 0 0 1 1 1 0 DTW domain Siah-Interact_N PF09032.6 gi|219852584|ref|YP_002467016.1| - 0.21 11.6 0.8 16 5.6 0.0 2.8 3 0 0 3 3 3 0 Siah interacting protein, N terminal Nudix_N_2 PF14803.1 gi|219852584|ref|YP_002467016.1| - 2.5 7.8 4.6 10 5.9 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal GATase_3 PF07685.9 gi|219852585|ref|YP_002467017.1| - 9.3e-42 142.3 0.1 1.4e-41 141.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.1 gi|219852585|ref|YP_002467017.1| - 6.7e-24 84.6 0.1 2e-23 83.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|219852585|ref|YP_002467017.1| - 1.5e-23 83.1 0.0 2.6e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.23 gi|219852585|ref|YP_002467017.1| - 2.4e-06 27.1 0.1 6.2e-06 25.7 0.0 1.7 3 0 0 3 3 3 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|219852585|ref|YP_002467017.1| - 0.00078 18.9 0.0 0.0022 17.4 0.0 1.7 1 0 0 1 1 1 1 DJ-1/PfpI family MobB PF03205.9 gi|219852585|ref|YP_002467017.1| - 0.011 15.4 0.0 0.32 10.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_S51 PF03575.12 gi|219852585|ref|YP_002467017.1| - 0.026 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Peptidase_C26 PF07722.8 gi|219852585|ref|YP_002467017.1| - 0.03 13.7 0.0 0.076 12.4 0.0 1.7 1 0 0 1 1 1 0 Peptidase C26 DUF1611 PF07755.6 gi|219852585|ref|YP_002467017.1| - 0.061 11.9 0.0 0.2 10.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) SNO PF01174.14 gi|219852585|ref|YP_002467017.1| - 0.13 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family ACT PF01842.20 gi|219852586|ref|YP_002467018.1| - 8.9e-05 21.8 2.7 0.00095 18.6 0.2 2.8 2 1 1 3 3 3 2 ACT domain ACT_4 PF13291.1 gi|219852586|ref|YP_002467018.1| - 0.015 15.6 1.0 1.8 8.9 0.0 2.9 2 1 1 3 3 3 0 ACT domain DUF1949 PF09186.6 gi|219852586|ref|YP_002467018.1| - 0.11 12.1 0.0 0.27 10.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) Homoserine_dh PF00742.14 gi|219852587|ref|YP_002467019.1| - 1.2e-57 194.4 0.1 1.8e-57 193.9 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|219852587|ref|YP_002467019.1| - 3.2e-11 43.6 0.1 6.4e-11 42.6 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|219852587|ref|YP_002467019.1| - 0.00028 20.5 0.1 0.00044 19.9 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|219852587|ref|YP_002467019.1| - 0.0014 17.6 0.2 0.0028 16.6 0.1 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|219852587|ref|YP_002467019.1| - 0.004 16.8 1.1 0.03 13.9 0.3 2.4 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|219852587|ref|YP_002467019.1| - 0.0043 16.9 0.2 0.0076 16.1 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus IlvN PF07991.7 gi|219852587|ref|YP_002467019.1| - 0.033 13.5 0.4 0.11 11.8 0.0 2.1 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|219852587|ref|YP_002467019.1| - 0.066 13.6 0.1 0.18 12.2 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|219852587|ref|YP_002467019.1| - 0.068 13.6 0.0 0.15 12.6 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|219852587|ref|YP_002467019.1| - 0.096 12.4 0.1 0.25 11.0 0.1 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|219852587|ref|YP_002467019.1| - 0.096 12.1 0.2 0.25 10.7 0.2 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|219852587|ref|YP_002467019.1| - 0.15 11.4 0.5 0.3 10.4 0.4 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrmB PF01978.14 gi|219852588|ref|YP_002467020.1| - 0.0001 21.9 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|219852588|ref|YP_002467020.1| - 0.00018 21.0 0.0 0.00048 19.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|219852588|ref|YP_002467020.1| - 0.00055 19.5 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|219852588|ref|YP_002467020.1| - 0.0011 18.5 0.1 0.0065 16.0 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|219852588|ref|YP_002467020.1| - 0.005 16.7 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|219852588|ref|YP_002467020.1| - 0.012 15.6 0.0 0.05 13.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|219852588|ref|YP_002467020.1| - 0.024 14.7 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.2 gi|219852588|ref|YP_002467020.1| - 0.029 14.6 0.0 0.066 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2206 PF09971.4 gi|219852589|ref|YP_002467021.1| - 2.3e-76 257.0 19.1 2.3e-76 257.0 13.2 2.7 2 1 0 2 2 2 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|219852589|ref|YP_002467021.1| - 2.8e-42 144.8 25.5 2.8e-42 144.8 17.7 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1616) Picorna_P3A PF06363.6 gi|219852589|ref|YP_002467021.1| - 0.049 13.6 0.2 0.16 11.9 0.1 1.9 1 0 0 1 1 1 0 Picornaviridae P3A protein Glycos_transf_1 PF00534.15 gi|219852590|ref|YP_002467022.1| - 7.6e-25 87.3 0.0 1.3e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219852590|ref|YP_002467022.1| - 7e-16 58.6 0.0 1.5e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219852590|ref|YP_002467022.1| - 9.7e-14 51.8 0.0 1.7e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|219852590|ref|YP_002467022.1| - 5.9e-11 42.4 0.2 9.5e-11 41.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|219852590|ref|YP_002467022.1| - 3.7e-09 36.5 0.1 5.5e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|219852590|ref|YP_002467022.1| - 4.8e-08 33.1 0.0 1.5e-07 31.5 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|219852591|ref|YP_002467023.1| - 6.1e-31 107.1 0.0 1e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219852591|ref|YP_002467023.1| - 4e-19 69.1 0.1 1.2e-18 67.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219852591|ref|YP_002467023.1| - 9.2e-12 45.0 0.0 1.8e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|219852591|ref|YP_002467023.1| - 4.4e-07 30.1 0.0 1.7e-06 28.2 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|219852591|ref|YP_002467023.1| - 0.001 18.6 0.0 0.0023 17.4 0.0 1.6 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|219852591|ref|YP_002467023.1| - 0.0015 18.7 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2493 PF10686.4 gi|219852591|ref|YP_002467023.1| - 0.029 13.9 0.0 0.067 12.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) CDC48_N PF02359.13 gi|219852591|ref|YP_002467023.1| - 0.041 13.8 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Glycos_transf_1 PF00534.15 gi|219852592|ref|YP_002467024.1| - 1.1e-32 112.8 0.0 2e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219852592|ref|YP_002467024.1| - 3.1e-22 79.4 0.0 9.8e-22 77.8 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|219852592|ref|YP_002467024.1| - 1.2e-20 74.0 0.0 1.8e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|219852592|ref|YP_002467024.1| - 4.5e-19 68.9 0.0 1.5e-18 67.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|219852592|ref|YP_002467024.1| - 1.3e-09 38.1 0.0 6.5e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|219852592|ref|YP_002467024.1| - 2e-08 34.1 0.0 4.1e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|219852592|ref|YP_002467024.1| - 2.1e-05 24.1 0.2 5e-05 22.9 0.1 1.7 1 1 0 1 1 1 1 Starch synthase catalytic domain DUF3492 PF11997.3 gi|219852592|ref|YP_002467024.1| - 0.037 13.5 0.7 0.14 11.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) Semialdhyde_dh PF01118.19 gi|219852593|ref|YP_002467025.1| - 7.3e-33 113.4 0.0 1.1e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|219852593|ref|YP_002467025.1| - 2e-31 109.3 0.0 2.9e-31 108.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Saccharop_dh PF03435.13 gi|219852593|ref|YP_002467025.1| - 0.00099 18.1 0.0 0.0015 17.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|219852593|ref|YP_002467025.1| - 0.0037 17.1 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|219852593|ref|YP_002467025.1| - 0.0048 17.3 0.0 0.0081 16.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|219852593|ref|YP_002467025.1| - 0.02 15.4 0.0 0.042 14.3 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.1 gi|219852593|ref|YP_002467025.1| - 0.029 14.3 0.1 0.054 13.5 0.0 1.5 1 1 0 1 1 1 0 NADH(P)-binding Alba PF01918.16 gi|219852594|ref|YP_002467026.1| - 3.3e-17 61.8 0.6 4.2e-17 61.4 0.4 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|219852594|ref|YP_002467026.1| - 0.036 13.7 0.5 0.056 13.1 0.3 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P PAS_3 PF08447.6 gi|219852596|ref|YP_002467028.1| - 2.3e-38 130.1 0.9 1.2e-20 73.3 0.2 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|219852596|ref|YP_002467028.1| - 1.9e-30 104.8 0.0 8.7e-30 102.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219852596|ref|YP_002467028.1| - 1.9e-15 57.1 0.0 5.4e-07 29.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|219852596|ref|YP_002467028.1| - 1.8e-11 43.8 0.2 8.4e-11 41.7 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|219852596|ref|YP_002467028.1| - 5.6e-08 32.5 0.0 0.0064 16.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219852596|ref|YP_002467028.1| - 1.1e-05 25.4 0.2 0.1 12.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|219852596|ref|YP_002467028.1| - 5e-05 23.4 0.0 0.0001 22.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|219852596|ref|YP_002467028.1| - 0.00019 21.0 0.0 0.00054 19.6 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|219852596|ref|YP_002467028.1| - 0.01 15.5 0.0 0.042 13.5 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2419 PF10343.4 gi|219852596|ref|YP_002467028.1| - 0.082 12.1 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) TBP PF00352.16 gi|219852598|ref|YP_002467030.1| - 2.2e-53 177.5 0.1 4.8e-27 93.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|219852598|ref|YP_002467030.1| - 4.9e-06 26.5 0.0 0.065 13.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Kelch_4 PF13418.1 gi|219852598|ref|YP_002467030.1| - 0.048 13.4 0.3 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Galactose oxidase, central domain Kelch_5 PF13854.1 gi|219852598|ref|YP_002467030.1| - 0.077 12.9 0.1 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Kelch motif DUF3252 PF11623.3 gi|219852598|ref|YP_002467030.1| - 0.096 12.1 0.0 2.8 7.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3252) ACT PF01842.20 gi|219852599|ref|YP_002467031.1| - 0.087 12.3 0.1 0.27 10.7 0.1 2.0 1 1 0 1 1 1 0 ACT domain HD PF01966.17 gi|219852600|ref|YP_002467032.1| - 1.3e-11 44.5 0.0 1.9e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 HD domain TFIIE_alpha PF02002.12 gi|219852601|ref|YP_002467033.1| - 2.7e-19 68.6 4.2 4.2e-19 67.9 2.9 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|219852601|ref|YP_002467033.1| - 0.0086 15.3 6.0 0.1 11.9 0.2 2.4 1 1 1 2 2 2 2 TFIIB zinc-binding HTH_IclR PF09339.5 gi|219852601|ref|YP_002467033.1| - 0.053 13.1 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.6 gi|219852601|ref|YP_002467033.1| - 0.065 13.1 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain IBR PF01485.16 gi|219852601|ref|YP_002467033.1| - 0.12 12.2 0.2 0.19 11.6 0.2 1.2 1 0 0 1 1 1 0 IBR domain Zn-ribbon_8 PF09723.5 gi|219852601|ref|YP_002467033.1| - 0.29 11.1 1.6 1 9.3 1.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF4182 PF13790.1 gi|219852601|ref|YP_002467033.1| - 0.77 9.5 0.1 0.77 9.5 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) ATP-grasp_3 PF02655.9 gi|219852602|ref|YP_002467034.1| - 5.6e-31 107.5 0.0 7.4e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|219852602|ref|YP_002467034.1| - 1.2e-13 51.2 0.0 2.9e-13 49.9 0.0 1.7 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|219852602|ref|YP_002467034.1| - 5.1e-10 38.6 0.0 1.7e-09 36.9 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|219852602|ref|YP_002467034.1| - 0.00015 21.1 0.0 0.0037 16.5 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Trm56 PF01994.11 gi|219852603|ref|YP_002467035.1| - 3.5e-47 159.0 0.0 4.3e-47 158.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Baculo_E56 PF04639.7 gi|219852603|ref|YP_002467035.1| - 0.071 11.7 0.0 0.089 11.4 0.0 1.1 1 0 0 1 1 1 0 Baculoviral E56 protein, specific to ODV envelope TPP_enzyme_C PF02775.16 gi|219852605|ref|YP_002467037.1| - 8.9e-27 93.5 0.0 1.4e-26 92.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|219852606|ref|YP_002467038.1| - 1.1e-69 234.4 0.1 1.4e-69 234.1 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|219852606|ref|YP_002467038.1| - 1.8e-06 27.9 0.1 4.3e-06 26.6 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|219852607|ref|YP_002467039.1| - 2.7e-12 45.7 15.5 1.3e-06 27.7 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852607|ref|YP_002467039.1| - 7.2e-10 38.2 10.4 7.4e-05 22.4 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852607|ref|YP_002467039.1| - 2.5e-09 36.7 24.9 2.2e-06 27.3 10.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852607|ref|YP_002467039.1| - 8.4e-09 35.6 11.3 0.00032 21.0 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852607|ref|YP_002467039.1| - 3.3e-08 33.2 14.6 0.00035 20.3 1.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852607|ref|YP_002467039.1| - 4.1e-08 32.7 13.2 6.4e-05 22.6 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219852607|ref|YP_002467039.1| - 1.4e-07 31.6 38.1 0.00011 22.3 10.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852607|ref|YP_002467039.1| - 4.3e-07 30.5 12.2 0.00043 20.9 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|219852607|ref|YP_002467039.1| - 1.6e-05 24.8 13.0 0.0012 18.7 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852607|ref|YP_002467039.1| - 3.9e-05 23.6 14.2 0.025 14.9 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852607|ref|YP_002467039.1| - 0.001 19.3 15.0 0.12 12.7 1.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219852607|ref|YP_002467039.1| - 0.0022 18.3 10.1 0.058 13.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219852607|ref|YP_002467039.1| - 0.0024 18.2 23.2 0.034 14.7 2.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219852607|ref|YP_002467039.1| - 0.038 14.4 14.8 0.41 11.0 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852607|ref|YP_002467039.1| - 0.038 14.5 14.3 0.16 12.5 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|219852608|ref|YP_002467040.1| - 8.2e-39 133.2 0.8 9.6e-39 133.0 0.5 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3572 PF12096.3 gi|219852608|ref|YP_002467040.1| - 0.17 11.7 2.7 0.35 10.7 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3572) SurE PF01975.12 gi|219852609|ref|YP_002467041.1| - 0.039 13.2 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 Survival protein SurE Epimerase PF01370.16 gi|219852610|ref|YP_002467042.1| - 4.6e-44 150.6 1.0 9e-44 149.6 0.1 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|219852610|ref|YP_002467042.1| - 7.1e-17 61.0 0.0 9.5e-17 60.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|219852610|ref|YP_002467042.1| - 6.6e-16 58.0 0.1 9.3e-16 57.5 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|219852610|ref|YP_002467042.1| - 5.6e-12 45.1 0.3 5.8e-10 38.5 0.2 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|219852610|ref|YP_002467042.1| - 2.1e-11 44.1 0.3 4e-11 43.2 0.2 1.5 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|219852610|ref|YP_002467042.1| - 7.1e-11 41.5 0.0 7.3e-10 38.2 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|219852610|ref|YP_002467042.1| - 3e-05 24.0 2.6 6.9e-05 22.8 1.8 1.7 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|219852610|ref|YP_002467042.1| - 0.0015 18.1 0.5 0.0036 17.0 0.2 1.7 2 0 0 2 2 2 1 KR domain PHB_acc_N PF07879.6 gi|219852610|ref|YP_002467042.1| - 0.099 12.3 0.0 7.5 6.3 0.0 2.8 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain PhosphMutase PF10143.4 gi|219852611|ref|YP_002467043.1| - 9.5e-50 168.5 0.0 1.3e-49 168.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|219852611|ref|YP_002467043.1| - 1.7e-47 161.9 0.0 2.1e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|219852611|ref|YP_002467043.1| - 0.00013 21.3 0.0 0.00035 19.9 0.0 1.7 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF605 PF04652.11 gi|219852612|ref|YP_002467044.1| - 8.3 5.6 21.7 9.7 5.4 15.0 1.1 1 0 0 1 1 1 0 Vta1 like PAT1 PF09770.4 gi|219852612|ref|YP_002467044.1| - 9.8 4.2 17.1 12 4.0 11.8 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 AAA_16 PF13191.1 gi|219852613|ref|YP_002467045.1| - 2.4e-10 40.7 0.0 8.6e-10 38.8 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|219852613|ref|YP_002467045.1| - 1.7e-08 34.6 0.0 3.3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|219852613|ref|YP_002467045.1| - 2.5e-06 27.1 0.0 6.9e-06 25.7 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal NACHT PF05729.7 gi|219852613|ref|YP_002467045.1| - 5.2e-05 22.9 0.0 0.00055 19.6 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|219852613|ref|YP_002467045.1| - 0.00013 22.1 0.0 0.00029 21.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|219852613|ref|YP_002467045.1| - 0.00079 19.1 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|219852613|ref|YP_002467045.1| - 0.0023 17.6 0.1 0.0064 16.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|219852613|ref|YP_002467045.1| - 0.0024 17.4 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|219852613|ref|YP_002467045.1| - 0.0033 16.4 0.0 0.0046 15.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|219852613|ref|YP_002467045.1| - 0.0034 16.3 0.0 0.0057 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_11 PF13086.1 gi|219852613|ref|YP_002467045.1| - 0.0036 16.9 0.0 0.0052 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|219852613|ref|YP_002467045.1| - 0.011 15.1 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SE PF00437.15 gi|219852613|ref|YP_002467045.1| - 0.013 14.4 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|219852613|ref|YP_002467045.1| - 0.024 14.3 0.3 0.08 12.6 0.1 1.9 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|219852613|ref|YP_002467045.1| - 0.026 14.1 0.2 0.088 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain z-alpha PF02295.12 gi|219852613|ref|YP_002467045.1| - 0.027 14.2 0.0 0.097 12.4 0.0 1.9 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain NB-ARC PF00931.17 gi|219852613|ref|YP_002467045.1| - 0.04 12.7 0.0 0.093 11.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.12 gi|219852613|ref|YP_002467045.1| - 0.049 13.0 0.0 2 7.8 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|219852613|ref|YP_002467045.1| - 0.071 13.0 0.1 0.22 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain MCH PF02289.11 gi|219852614|ref|YP_002467046.1| - 5.8e-131 436.1 0.2 6.6e-131 436.0 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Nitro_FeMo-Co PF02579.12 gi|219852615|ref|YP_002467047.1| - 1.5e-18 66.6 0.1 1.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|219852617|ref|YP_002467049.1| - 2e-18 66.2 0.1 2.5e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.4 gi|219852618|ref|YP_002467050.1| - 3.1e-34 116.7 0.2 5.4e-34 115.9 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|219852618|ref|YP_002467050.1| - 3.4e-21 75.5 0.0 5.1e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|219852618|ref|YP_002467050.1| - 5.2e-11 42.7 0.0 3.1e-10 40.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|219852618|ref|YP_002467050.1| - 2e-08 33.6 0.0 3.8e-08 32.7 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|219852618|ref|YP_002467050.1| - 2.1e-07 30.2 1.8 5e-06 25.7 0.1 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|219852618|ref|YP_002467050.1| - 0.00019 20.7 0.0 0.0016 17.6 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|219852618|ref|YP_002467050.1| - 0.0004 20.0 0.5 0.11 12.1 0.1 2.4 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|219852618|ref|YP_002467050.1| - 0.00094 18.8 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|219852618|ref|YP_002467050.1| - 0.0014 18.2 0.9 0.018 14.7 0.4 2.5 3 0 0 3 3 3 1 Part of AAA domain VirC1 PF07015.6 gi|219852618|ref|YP_002467050.1| - 0.0037 16.3 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|219852618|ref|YP_002467050.1| - 0.012 15.0 0.1 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|219852618|ref|YP_002467050.1| - 0.019 13.7 0.2 0.033 12.9 0.2 1.3 1 0 0 1 1 1 0 ArgK protein AAA_17 PF13207.1 gi|219852618|ref|YP_002467050.1| - 0.025 15.4 0.1 0.13 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|219852618|ref|YP_002467050.1| - 0.036 13.7 0.1 0.065 12.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|219852618|ref|YP_002467050.1| - 0.04 13.4 0.1 0.37 10.3 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|219852618|ref|YP_002467050.1| - 0.062 13.6 0.1 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|219852618|ref|YP_002467050.1| - 0.076 12.2 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|219852618|ref|YP_002467050.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|219852618|ref|YP_002467050.1| - 0.12 11.6 0.1 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 YhjQ PF06564.7 gi|219852618|ref|YP_002467050.1| - 0.18 11.1 0.4 0.81 8.9 0.1 1.8 2 0 0 2 2 2 0 YhjQ protein Glyco_hydro_20b PF02838.10 gi|219852619|ref|YP_002467051.1| - 0.099 13.1 1.2 0.16 12.5 0.8 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 20, domain 2 Abhydrolase_6 PF12697.2 gi|219852620|ref|YP_002467052.1| - 4.8e-15 56.0 0.3 5.8e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|219852620|ref|YP_002467052.1| - 9.2e-08 31.9 0.0 1.4e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|219852620|ref|YP_002467052.1| - 0.036 13.3 0.0 0.27 10.5 0.0 2.2 3 0 0 3 3 3 0 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|219852620|ref|YP_002467052.1| - 0.038 13.2 0.0 0.42 9.8 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family Hjc PF01870.13 gi|219852622|ref|YP_002467054.1| - 0.078 12.5 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) MarR_2 PF12802.2 gi|219852623|ref|YP_002467055.1| - 0.03 13.9 0.6 0.083 12.5 0.0 2.0 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|219852627|ref|YP_002467059.1| - 4.4e-08 32.7 0.0 4.5e-06 26.3 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|219852627|ref|YP_002467059.1| - 0.0022 17.7 0.6 0.0077 16.0 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix Methyltransf_11 PF08241.7 gi|219852628|ref|YP_002467060.1| - 1.4e-20 73.6 0.0 2.2e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852628|ref|YP_002467060.1| - 3.1e-17 62.5 0.0 3.8e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852628|ref|YP_002467060.1| - 5.6e-16 58.8 0.0 8.5e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852628|ref|YP_002467060.1| - 7.3e-16 58.7 0.0 1.1e-15 58.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852628|ref|YP_002467060.1| - 1.6e-13 50.8 0.0 3.4e-13 49.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain TPMT PF05724.6 gi|219852628|ref|YP_002467060.1| - 6.5e-13 48.6 0.0 1.4e-12 47.4 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.1 gi|219852628|ref|YP_002467060.1| - 2.2e-12 46.9 0.0 3e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219852628|ref|YP_002467060.1| - 6.4e-10 39.0 0.0 1.8e-09 37.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|219852628|ref|YP_002467060.1| - 4.3e-09 35.8 0.0 5.5e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|219852628|ref|YP_002467060.1| - 1.2e-08 34.5 0.0 1.6e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|219852628|ref|YP_002467060.1| - 5.4e-08 32.2 0.0 6.2e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|219852628|ref|YP_002467060.1| - 1.1e-07 31.2 0.0 1.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|219852628|ref|YP_002467060.1| - 3.1e-07 30.0 0.0 3.7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|219852628|ref|YP_002467060.1| - 0.00034 19.0 0.0 0.00039 18.8 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase FmrO PF07091.6 gi|219852628|ref|YP_002467060.1| - 0.0042 16.1 0.0 0.0055 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|219852628|ref|YP_002467060.1| - 0.0056 15.8 0.0 0.0067 15.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|219852628|ref|YP_002467060.1| - 0.0067 16.1 0.0 0.0093 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|219852628|ref|YP_002467060.1| - 0.029 14.3 0.0 0.11 12.5 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|219852628|ref|YP_002467060.1| - 0.042 13.4 0.0 0.12 12.0 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_4 PF02390.12 gi|219852628|ref|YP_002467060.1| - 0.043 12.8 0.0 0.18 10.8 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase CheR PF01739.13 gi|219852628|ref|YP_002467060.1| - 0.062 12.5 0.0 0.3 10.3 0.0 1.9 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_24 PF13578.1 gi|219852628|ref|YP_002467060.1| - 0.12 13.2 0.0 0.2 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TRM13 PF05206.9 gi|219852628|ref|YP_002467060.1| - 0.13 11.4 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase TRM13 DUF4428 PF14471.1 gi|219852629|ref|YP_002467061.1| - 0.0066 16.1 0.1 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) TF_Zn_Ribbon PF08271.7 gi|219852629|ref|YP_002467061.1| - 0.78 9.1 3.0 14 5.0 2.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding CutA1 PF03091.10 gi|219852630|ref|YP_002467062.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 1 0 1 1 1 0 CutA1 divalent ion tolerance protein Virulence_RhuM PF13310.1 gi|219852631|ref|YP_002467063.1| - 1.7e-121 404.1 3.9 2.3e-121 403.7 2.7 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family Phage_pRha PF09669.5 gi|219852631|ref|YP_002467063.1| - 0.078 13.3 0.9 0.3 11.4 0.0 2.3 3 0 0 3 3 3 0 Phage regulatory protein Rha (Phage_pRha) HTH_Crp_2 PF13545.1 gi|219852631|ref|YP_002467063.1| - 0.12 12.2 0.4 19 5.1 0.1 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF1016 PF06250.6 gi|219852634|ref|YP_002467066.1| - 1.9e-30 105.9 0.0 2.1e-30 105.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) DUF4229 PF14012.1 gi|219852635|ref|YP_002467067.1| - 0.17 11.8 5.1 0.2 11.5 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) HTH_34 PF13601.1 gi|219852637|ref|YP_002467069.1| - 1.1e-17 63.7 0.1 2.1e-17 62.9 0.0 1.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.9 gi|219852637|ref|YP_002467069.1| - 2.2e-06 27.3 0.1 3.6e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|219852637|ref|YP_002467069.1| - 0.00057 19.6 0.1 0.0019 17.9 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|219852637|ref|YP_002467069.1| - 0.0029 17.3 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|219852637|ref|YP_002467069.1| - 0.012 15.9 0.1 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|219852637|ref|YP_002467069.1| - 0.016 14.9 0.0 0.12 12.1 0.0 1.9 1 1 1 2 2 2 0 MarR family HTH_5 PF01022.15 gi|219852637|ref|YP_002467069.1| - 0.12 12.0 0.2 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PemK PF02452.12 gi|219852639|ref|YP_002467071.1| - 2.8e-19 69.3 0.0 3e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein EVE PF01878.13 gi|219852640|ref|YP_002467072.1| - 3.6e-13 49.7 0.0 4e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 EVE domain HEPN PF05168.9 gi|219852643|ref|YP_002467075.1| - 0.01 15.6 0.7 0.026 14.4 0.5 1.7 1 1 0 1 1 1 0 HEPN domain Cob_adeno_trans PF01923.13 gi|219852643|ref|YP_002467075.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Cobalamin adenosyltransferase ABC_tran PF00005.22 gi|219852645|ref|YP_002467077.1| - 5.9e-27 94.6 0.0 9.1e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852645|ref|YP_002467077.1| - 1.5e-13 51.3 0.0 1.3e-09 38.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|219852645|ref|YP_002467077.1| - 7.2e-07 29.6 0.0 1.2e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|219852645|ref|YP_002467077.1| - 0.00054 19.4 0.2 0.0011 18.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|219852645|ref|YP_002467077.1| - 0.0017 17.4 0.0 0.0082 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|219852645|ref|YP_002467077.1| - 0.0018 18.6 0.0 0.0028 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|219852645|ref|YP_002467077.1| - 0.0027 16.9 0.0 0.56 9.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|219852645|ref|YP_002467077.1| - 0.0072 15.7 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|219852645|ref|YP_002467077.1| - 0.021 14.2 0.2 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain FluMu_gp41 PF10109.4 gi|219852645|ref|YP_002467077.1| - 0.038 13.8 0.0 0.13 12.2 0.0 1.9 1 0 0 1 1 1 0 Mu-like prophage FluMu protein gp41 AAA PF00004.24 gi|219852645|ref|YP_002467077.1| - 0.072 13.2 0.3 0.55 10.4 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KdpD PF02702.12 gi|219852645|ref|YP_002467077.1| - 0.076 12.1 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_5 PF07728.9 gi|219852645|ref|YP_002467077.1| - 0.1 12.3 0.1 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|219852645|ref|YP_002467077.1| - 0.1 12.3 0.2 0.29 10.9 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain ABC2_membrane PF01061.19 gi|219852646|ref|YP_002467078.1| - 1.9e-30 105.6 21.2 1.9e-30 105.6 14.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219852646|ref|YP_002467078.1| - 9.2e-13 47.9 24.0 9.2e-13 47.9 16.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219852646|ref|YP_002467078.1| - 8.1e-05 21.6 15.0 8.1e-05 21.6 10.4 2.3 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219852646|ref|YP_002467078.1| - 0.0018 17.4 24.5 0.0025 17.0 17.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|219852646|ref|YP_002467078.1| - 0.1 11.8 22.6 0.4 9.9 15.7 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein SAYSvFN PF10260.4 gi|219852646|ref|YP_002467078.1| - 9.6 6.0 9.0 3.4 7.5 2.6 2.4 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) TPR_11 PF13414.1 gi|219852647|ref|YP_002467079.1| - 3.9e-12 45.6 0.5 7.9e-12 44.6 0.3 1.6 1 1 0 1 1 1 1 TPR repeat TPR_1 PF00515.23 gi|219852647|ref|YP_002467079.1| - 8.7e-12 44.1 4.6 0.00022 20.6 2.2 3.1 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219852647|ref|YP_002467079.1| - 6.3e-10 38.1 2.2 0.0022 17.7 0.1 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219852647|ref|YP_002467079.1| - 2.4e-07 30.4 2.0 0.0078 16.3 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219852647|ref|YP_002467079.1| - 4.1e-07 29.3 0.3 0.0071 16.0 0.1 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|219852647|ref|YP_002467079.1| - 0.00022 21.7 0.0 0.096 13.3 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|219852647|ref|YP_002467079.1| - 0.0036 17.2 0.1 0.49 10.3 0.1 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|219852647|ref|YP_002467079.1| - 0.0039 17.0 0.0 0.0065 16.2 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219852647|ref|YP_002467079.1| - 0.015 15.0 0.1 0.17 11.7 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219852647|ref|YP_002467079.1| - 0.018 15.6 0.0 3 8.7 0.0 2.6 1 1 2 3 3 3 0 Tetratricopeptide repeat lci PF12197.3 gi|219852647|ref|YP_002467079.1| - 0.03 13.8 2.3 0.16 11.5 0.1 2.3 2 0 0 2 2 2 0 Bacillus cereus group antimicrobial protein FIVAR PF07554.8 gi|219852647|ref|YP_002467079.1| - 0.046 13.9 1.7 6.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised Sugar-binding Domain NARP1 PF12569.3 gi|219852647|ref|YP_002467079.1| - 0.055 12.2 0.0 0.062 12.0 0.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|219852647|ref|YP_002467079.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain TPR_19 PF14559.1 gi|219852647|ref|YP_002467079.1| - 0.12 12.6 0.0 0.48 10.8 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2206 PF09971.4 gi|219852647|ref|YP_002467079.1| - 0.14 10.9 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) CS PF04969.11 gi|219852648|ref|YP_002467080.1| - 0.002 18.5 0.0 0.0028 18.1 0.0 1.2 1 0 0 1 1 1 1 CS domain HTH_5 PF01022.15 gi|219852649|ref|YP_002467081.1| - 3.7e-13 48.9 0.7 4.6e-08 32.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|219852649|ref|YP_002467081.1| - 1.3e-10 40.8 0.9 2.2e-06 27.3 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|219852649|ref|YP_002467081.1| - 2.3e-08 33.2 4.5 0.00092 18.5 0.1 3.0 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|219852649|ref|YP_002467081.1| - 2.2e-07 30.4 0.2 0.00074 19.1 0.0 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|219852649|ref|YP_002467081.1| - 2.4e-05 23.9 0.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|219852649|ref|YP_002467081.1| - 4.2e-05 23.4 0.5 0.00084 19.2 0.0 2.5 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|219852649|ref|YP_002467081.1| - 0.00015 21.8 0.1 0.62 10.2 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.1 gi|219852649|ref|YP_002467081.1| - 0.00026 21.2 0.1 0.055 13.7 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.9 gi|219852649|ref|YP_002467081.1| - 0.00082 19.0 0.6 1.2 8.9 0.1 2.8 2 1 0 2 2 2 2 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|219852649|ref|YP_002467081.1| - 0.00096 18.8 0.3 1.9 8.3 0.0 2.8 2 1 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.17 gi|219852649|ref|YP_002467081.1| - 0.0012 18.5 0.7 1 9.0 0.1 2.6 2 0 0 2 2 2 2 MarR family HTH_45 PF14947.1 gi|219852649|ref|YP_002467081.1| - 0.0015 18.2 0.1 0.66 9.8 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|219852649|ref|YP_002467081.1| - 0.0022 17.9 0.1 0.031 14.3 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain ArsR PF09824.4 gi|219852649|ref|YP_002467081.1| - 0.0089 15.3 0.1 0.63 9.3 0.0 2.3 2 1 0 2 2 2 1 ArsR transcriptional regulator LexA_DNA_bind PF01726.11 gi|219852649|ref|YP_002467081.1| - 0.014 14.9 0.3 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain HxlR PF01638.12 gi|219852649|ref|YP_002467081.1| - 0.022 14.3 0.9 4.7 6.9 0.1 2.5 2 1 1 3 3 3 0 HxlR-like helix-turn-helix TFIIE_alpha PF02002.12 gi|219852649|ref|YP_002467081.1| - 0.032 13.7 1.5 0.37 10.3 0.1 2.4 2 0 0 2 2 2 0 TFIIE alpha subunit DUF4423 PF14394.1 gi|219852649|ref|YP_002467081.1| - 0.079 12.4 0.1 0.73 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Rio2_N PF09202.6 gi|219852649|ref|YP_002467081.1| - 0.085 12.9 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Rio2, N-terminal DUF2513 PF10711.4 gi|219852649|ref|YP_002467081.1| - 0.091 12.8 0.1 5.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) IMPDH PF00478.20 gi|219852650|ref|YP_002467082.1| - 2.1e-130 434.7 9.8 2.4e-130 434.5 6.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|219852650|ref|YP_002467082.1| - 2.2e-28 97.7 4.2 7.2e-15 54.5 0.1 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|219852650|ref|YP_002467082.1| - 1.6e-10 40.7 8.7 1.4e-05 24.4 3.9 2.4 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|219852650|ref|YP_002467082.1| - 2e-08 33.5 3.3 4e-07 29.2 3.2 2.2 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|219852650|ref|YP_002467082.1| - 0.00014 20.8 9.3 0.00027 19.9 6.4 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|219852650|ref|YP_002467082.1| - 0.00064 18.8 2.9 0.0018 17.3 2.0 1.7 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|219852650|ref|YP_002467082.1| - 0.0064 15.7 1.5 0.0064 15.7 1.0 2.5 2 1 0 2 2 2 1 Histidine biosynthesis protein Beta_elim_lyase PF01212.16 gi|219852650|ref|YP_002467082.1| - 0.042 12.9 1.5 0.045 12.9 0.2 1.7 2 0 0 2 2 2 0 Beta-eliminating lyase EAL PF00563.15 gi|219852650|ref|YP_002467082.1| - 0.14 11.5 0.2 0.94 8.9 0.0 2.1 2 0 0 2 2 2 0 EAL domain DUF556 PF04476.8 gi|219852651|ref|YP_002467083.1| - 3.3e-75 252.3 1.2 3.7e-75 252.1 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) His_biosynth PF00977.16 gi|219852652|ref|YP_002467084.1| - 1.9e-20 73.1 0.0 6.8e-20 71.3 0.0 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|219852652|ref|YP_002467084.1| - 0.042 13.0 0.0 0.055 12.7 0.0 1.1 1 0 0 1 1 1 0 PcrB family TIM PF00121.13 gi|219852652|ref|YP_002467084.1| - 0.043 12.8 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase Thymidylate_kin PF02223.12 gi|219852653|ref|YP_002467085.1| - 2.9e-42 144.1 0.0 3.4e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|219852653|ref|YP_002467085.1| - 6.8e-05 22.8 0.0 0.00015 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain BatA PF07584.6 gi|219852653|ref|YP_002467085.1| - 0.024 14.8 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal AAA_22 PF13401.1 gi|219852653|ref|YP_002467085.1| - 0.03 14.4 0.0 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|219852653|ref|YP_002467085.1| - 0.035 14.9 0.1 0.089 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|219852653|ref|YP_002467085.1| - 0.046 13.7 0.2 0.078 12.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|219852653|ref|YP_002467085.1| - 0.084 13.1 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|219852653|ref|YP_002467085.1| - 0.12 12.2 0.2 0.76 9.6 0.1 2.2 1 1 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.17 gi|219852654|ref|YP_002467086.1| - 2.7e-129 431.9 0.1 1.7e-128 429.3 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|219852654|ref|YP_002467086.1| - 1.9e-32 112.1 0.0 4.2e-32 111.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|219852654|ref|YP_002467086.1| - 3.3e-27 95.1 0.3 4.7e-15 55.1 0.0 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|219852654|ref|YP_002467086.1| - 0.00042 19.5 0.0 0.96 8.4 0.1 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|219852654|ref|YP_002467086.1| - 0.00066 19.0 0.0 0.0018 17.5 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 RNA_POL_M_15KD PF02150.11 gi|219852654|ref|YP_002467086.1| - 0.03 14.0 2.0 0.25 11.0 1.4 2.4 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|219852654|ref|YP_002467086.1| - 0.039 13.7 3.7 0.7 9.7 0.1 3.3 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|219852654|ref|YP_002467086.1| - 0.23 10.9 3.4 0.48 9.9 0.0 3.1 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|219852654|ref|YP_002467086.1| - 1.5 8.1 5.2 5.5 6.3 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding DUF92 PF01940.11 gi|219852655|ref|YP_002467087.1| - 9.6e-69 230.9 19.5 9.6e-69 230.9 13.5 2.3 3 0 0 3 3 3 1 Integral membrane protein DUF92 PKD PF00801.15 gi|219852656|ref|YP_002467088.1| - 2.1e-39 133.1 54.5 4.1e-16 58.4 2.4 6.0 7 0 0 7 7 7 4 PKD domain CBM_6 PF03422.10 gi|219852656|ref|YP_002467088.1| - 1.6e-25 89.6 2.8 1.6e-25 89.6 1.9 4.9 3 2 1 4 4 4 1 Carbohydrate binding module (family 6) ThiC-associated PF13667.1 gi|219852656|ref|YP_002467088.1| - 0.012 15.1 4.6 1.1 8.9 0.0 4.4 4 0 0 4 4 4 0 ThiC-associated domain PMP1_2 PF08114.6 gi|219852656|ref|YP_002467088.1| - 0.22 11.0 2.2 0.48 9.9 1.5 1.6 1 0 0 1 1 1 0 ATPase proteolipid family PKD PF00801.15 gi|219852657|ref|YP_002467089.1| - 2e-38 129.9 33.8 5e-16 58.1 1.2 5.2 5 0 0 5 5 5 3 PKD domain CBM_6 PF03422.10 gi|219852657|ref|YP_002467089.1| - 1e-26 93.5 2.2 1e-26 93.5 1.6 3.9 2 2 0 3 3 3 1 Carbohydrate binding module (family 6) DUF1918 PF08940.6 gi|219852657|ref|YP_002467089.1| - 0.028 13.7 0.0 3.2 7.1 0.0 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) PKD PF00801.15 gi|219852658|ref|YP_002467090.1| - 5e-87 285.6 134.1 2.7e-15 55.8 4.5 10.7 10 2 0 11 11 11 8 PKD domain CBM_6 PF03422.10 gi|219852658|ref|YP_002467090.1| - 6.9e-26 90.8 2.2 6.9e-26 90.8 1.6 8.8 5 3 3 9 9 9 1 Carbohydrate binding module (family 6) A2M_N PF01835.14 gi|219852658|ref|YP_002467090.1| - 0.0064 16.7 20.0 22 5.3 0.1 7.5 6 1 0 7 7 7 2 MG2 domain Y_Y_Y PF07495.8 gi|219852658|ref|YP_002467090.1| - 0.0073 16.0 24.6 0.18 11.6 0.4 6.8 7 0 0 7 7 7 3 Y_Y_Y domain PKD PF00801.15 gi|219852660|ref|YP_002467092.1| - 4.5e-38 128.8 54.6 2.4e-15 55.9 2.5 6.0 6 1 0 6 6 6 4 PKD domain CBM_6 PF03422.10 gi|219852660|ref|YP_002467092.1| - 2.6e-26 92.1 3.1 2.6e-26 92.1 2.1 5.4 5 2 1 6 6 6 2 Carbohydrate binding module (family 6) DUF4480 PF13715.1 gi|219852660|ref|YP_002467092.1| - 1.1e-12 47.8 3.9 5e-05 23.2 0.0 4.4 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) DUF1918 PF08940.6 gi|219852660|ref|YP_002467092.1| - 0.028 13.7 0.0 2.7 7.3 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) ThiC-associated PF13667.1 gi|219852660|ref|YP_002467092.1| - 0.056 13.0 10.0 0.97 9.0 0.0 4.5 4 0 0 4 4 4 0 ThiC-associated domain CarboxypepD_reg PF13620.1 gi|219852661|ref|YP_002467093.1| - 5.6e-50 167.3 82.0 2.7e-09 36.9 0.3 12.3 13 0 0 13 13 13 7 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|219852661|ref|YP_002467093.1| - 6.3e-39 131.9 44.2 1.3e-06 28.3 0.2 9.1 9 0 0 9 9 8 7 Domain of unknown function (DUF4480) PKD PF00801.15 gi|219852661|ref|YP_002467093.1| - 6.1e-35 118.7 63.3 1.7e-17 62.9 2.4 7.8 6 2 1 7 7 6 4 PKD domain CBM_6 PF03422.10 gi|219852661|ref|YP_002467093.1| - 4.2e-24 85.0 3.0 4.2e-24 85.0 2.1 8.3 8 3 0 8 8 8 1 Carbohydrate binding module (family 6) UPF0560 PF10577.4 gi|219852661|ref|YP_002467093.1| - 1.7e-11 43.1 15.2 0.036 12.3 0.1 5.4 5 0 0 5 5 5 5 Uncharacterised protein family UPF0560 DUF824 PF05688.6 gi|219852661|ref|YP_002467093.1| - 4.7e-10 38.9 23.8 0.28 10.8 0.0 8.7 8 0 0 8 8 8 5 Salmonella repeat of unknown function (DUF824) DUF3244 PF11589.3 gi|219852661|ref|YP_002467093.1| - 5e-10 39.0 18.6 0.021 14.5 0.1 8.6 9 0 0 9 9 9 3 Domain of unknown function (DUF3244) MG1 PF11974.3 gi|219852661|ref|YP_002467093.1| - 7.4e-09 36.0 25.8 0.66 10.5 0.1 8.5 3 1 3 8 8 8 4 Alpha-2-macroglobulin MG1 domain HTH_44 PF14641.1 gi|219852661|ref|YP_002467093.1| - 0.00032 20.6 0.0 11 6.0 0.0 4.1 4 0 0 4 4 4 1 Helix-turn-helix DNA-binding domain of SPT6 Y_Y_Y PF07495.8 gi|219852661|ref|YP_002467093.1| - 0.00048 19.8 11.3 0.075 12.7 0.5 4.8 4 0 0 4 4 4 2 Y_Y_Y domain DUF4625 PF15418.1 gi|219852661|ref|YP_002467093.1| - 0.18 11.9 2.4 18 5.4 0.0 4.4 5 0 0 5 5 4 0 Domain of unknown function (DUF4625) SnoaL PF07366.7 gi|219852661|ref|YP_002467093.1| - 0.44 10.1 7.7 24 4.5 0.0 5.3 6 0 0 6 6 6 0 SnoaL-like polyketide cyclase Plectin PF00681.15 gi|219852661|ref|YP_002467093.1| - 5.4 6.6 8.2 1e+02 2.5 0.1 4.3 4 0 0 4 4 4 0 Plectin repeat NHL PF01436.16 gi|219852663|ref|YP_002467095.1| - 7.8e-62 202.2 14.7 3.4e-13 48.7 0.2 7.1 6 1 0 6 6 6 6 NHL repeat SGL PF08450.7 gi|219852663|ref|YP_002467095.1| - 1.5e-23 83.4 6.3 1.5e-05 24.5 0.1 5.3 2 1 2 5 5 5 5 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|219852663|ref|YP_002467095.1| - 8.7e-10 38.2 37.0 0.001 18.7 0.2 6.9 7 1 0 7 7 7 4 Beta-propeller repeat Arylesterase PF01731.15 gi|219852663|ref|YP_002467095.1| - 2.1e-07 30.8 1.6 2.2 8.3 0.0 5.9 6 0 0 6 6 6 1 Arylesterase DUF839 PF05787.8 gi|219852663|ref|YP_002467095.1| - 8.8e-07 28.2 7.9 0.00032 19.7 1.7 3.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF839) SdiA-regulated PF06977.6 gi|219852663|ref|YP_002467095.1| - 4.9e-05 22.3 0.6 2.1 7.1 0.0 4.5 3 2 2 5 5 5 2 SdiA-regulated Ldl_recept_b PF00058.12 gi|219852663|ref|YP_002467095.1| - 0.00016 21.9 0.0 6 7.2 0.0 5.2 5 1 0 5 5 5 1 Low-density lipoprotein receptor repeat class B MRJP PF03022.11 gi|219852663|ref|YP_002467095.1| - 0.0048 16.1 0.1 3 6.9 0.0 3.7 1 1 0 3 3 3 1 Major royal jelly protein Phytase-like PF13449.1 gi|219852663|ref|YP_002467095.1| - 0.0091 15.3 0.0 3.6 6.7 0.0 3.6 1 1 2 4 4 4 1 Esterase-like activity of phytase US22 PF02393.11 gi|219852663|ref|YP_002467095.1| - 0.031 14.2 0.0 66 3.5 0.0 4.2 4 1 0 4 4 4 0 US22 like DUF4237 PF14021.1 gi|219852663|ref|YP_002467095.1| - 0.049 13.9 1.0 12 6.2 0.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4237) Arch_fla_DE PF04659.8 gi|219852663|ref|YP_002467095.1| - 0.096 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal flagella protein EF-hand_6 PF13405.1 gi|219852663|ref|YP_002467095.1| - 0.38 10.7 2.4 10 6.3 0.1 3.0 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|219852663|ref|YP_002467095.1| - 0.46 9.9 8.2 1.9 8.0 0.1 2.8 3 0 0 3 3 2 0 EF hand PsbR PF04725.7 gi|219852663|ref|YP_002467095.1| - 2 8.4 9.9 14 5.7 0.1 4.7 3 1 1 5 5 5 0 Photosystem II 10 kDa polypeptide PsbR DUF485 PF04341.7 gi|219852664|ref|YP_002467096.1| - 0.0035 17.0 5.2 0.0035 17.0 3.6 3.2 2 1 2 4 4 4 1 Protein of unknown function, DUF485 DUF4407 PF14362.1 gi|219852664|ref|YP_002467096.1| - 3.4 6.5 10.6 4.7 6.0 7.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3040 PF11239.3 gi|219852664|ref|YP_002467096.1| - 7.5 6.6 13.3 2.4 8.2 4.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) PK_C PF02887.11 gi|219852665|ref|YP_002467097.1| - 1.2e-18 66.7 4.6 1.5e-18 66.4 3.2 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Asp_Glu_race PF01177.17 gi|219852665|ref|YP_002467097.1| - 0.19 11.5 2.5 0.26 11.1 1.6 1.7 1 1 0 1 1 1 0 Asp/Glu/Hydantoin racemase DUF362 PF04015.7 gi|219852666|ref|YP_002467098.1| - 6e-27 94.4 0.0 1.4e-26 93.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_10 PF13237.1 gi|219852666|ref|YP_002467098.1| - 9.7e-14 50.9 21.1 1.2e-10 40.9 7.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852666|ref|YP_002467098.1| - 9.5e-11 40.8 12.6 1.5e-05 24.3 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852666|ref|YP_002467098.1| - 3.7e-10 39.2 12.7 1.7e-06 27.6 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852666|ref|YP_002467098.1| - 4.7e-10 39.1 8.6 0.00017 21.4 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852666|ref|YP_002467098.1| - 6.3e-10 39.1 8.8 1.3e-09 38.1 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852666|ref|YP_002467098.1| - 1.9e-09 37.7 10.5 5.9e-09 36.1 7.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852666|ref|YP_002467098.1| - 5.9e-08 33.3 5.2 0.0027 18.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|219852666|ref|YP_002467098.1| - 1.7e-07 30.7 13.2 0.0019 18.0 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852666|ref|YP_002467098.1| - 2.1e-05 24.4 10.8 0.0017 18.3 8.8 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852666|ref|YP_002467098.1| - 4.9e-05 23.6 8.1 0.028 14.8 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|219852666|ref|YP_002467098.1| - 6.3e-05 22.7 2.6 0.00011 22.0 1.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852666|ref|YP_002467098.1| - 0.00015 22.0 10.7 0.025 14.9 1.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852666|ref|YP_002467098.1| - 0.00015 21.7 13.3 0.049 13.9 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852666|ref|YP_002467098.1| - 0.00082 19.8 12.2 0.11 13.0 2.1 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219852666|ref|YP_002467098.1| - 0.00084 19.7 18.4 0.074 13.6 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain DUF2088 PF09861.4 gi|219852666|ref|YP_002467098.1| - 0.0093 15.0 0.3 0.015 14.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Fer4_13 PF13370.1 gi|219852666|ref|YP_002467098.1| - 0.098 13.0 9.9 1.7 9.0 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain AIM24 PF01987.12 gi|219852667|ref|YP_002467099.1| - 8.9e-61 205.0 5.5 1e-60 204.8 3.8 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PPDK_N PF01326.14 gi|219852668|ref|YP_002467100.1| - 1.3e-102 343.1 0.1 2.1e-102 342.5 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|219852668|ref|YP_002467100.1| - 6.4e-82 274.7 0.0 1.2e-81 273.8 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|219852668|ref|YP_002467100.1| - 8.5e-28 95.7 1.4 2.8e-27 94.0 0.9 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pyridoxal_deC PF00282.14 gi|219852669|ref|YP_002467101.1| - 6e-30 103.9 0.0 8.8e-30 103.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|219852669|ref|YP_002467101.1| - 3.7e-12 45.6 0.0 3.3e-11 42.5 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|219852669|ref|YP_002467101.1| - 9.1e-06 24.8 0.0 2.1e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|219852669|ref|YP_002467101.1| - 0.00021 20.4 0.1 0.0003 19.9 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|219852669|ref|YP_002467101.1| - 0.0016 17.6 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|219852669|ref|YP_002467101.1| - 0.02 13.4 0.0 0.032 12.7 0.0 1.3 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Pribosyltran PF00156.22 gi|219852670|ref|YP_002467102.1| - 1.1e-18 67.1 0.8 1.4e-18 66.8 0.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|219852670|ref|YP_002467102.1| - 0.0028 16.8 0.1 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|219852670|ref|YP_002467102.1| - 0.024 13.9 0.0 0.034 13.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Diphthamide_syn PF01866.12 gi|219852671|ref|YP_002467103.1| - 2.8e-86 289.5 0.0 3.2e-86 289.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.9 gi|219852672|ref|YP_002467104.1| - 6.5e-19 67.9 0.0 9.3e-19 67.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|219852672|ref|YP_002467104.1| - 1.7e-17 63.5 0.1 2.3e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852672|ref|YP_002467104.1| - 9.3e-16 57.7 0.0 1.5e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|219852672|ref|YP_002467104.1| - 1.4e-14 53.9 0.1 1.8e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|219852672|ref|YP_002467104.1| - 3.9e-14 52.6 0.1 5.6e-14 52.1 0.1 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|219852672|ref|YP_002467104.1| - 1e-11 45.4 0.0 1.5e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219852672|ref|YP_002467104.1| - 1.6e-10 41.3 0.0 2.5e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852672|ref|YP_002467104.1| - 4.7e-10 39.7 0.0 8.5e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|219852672|ref|YP_002467104.1| - 1.2e-09 37.8 0.0 1.7e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|219852672|ref|YP_002467104.1| - 1.3e-07 32.0 0.0 2.1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|219852672|ref|YP_002467104.1| - 2.4e-06 26.7 0.0 3.3e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_23 PF13489.1 gi|219852672|ref|YP_002467104.1| - 1.2e-05 25.1 0.0 1.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|219852672|ref|YP_002467104.1| - 1.7e-05 23.9 0.0 2.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.11 gi|219852672|ref|YP_002467104.1| - 2.8e-05 23.3 0.0 3.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_32 PF13679.1 gi|219852672|ref|YP_002467104.1| - 5.9e-05 22.7 0.0 6.5e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|219852672|ref|YP_002467104.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|219852672|ref|YP_002467104.1| - 0.00075 19.0 0.0 0.00085 18.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|219852672|ref|YP_002467104.1| - 0.0022 16.7 0.0 0.003 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|219852672|ref|YP_002467104.1| - 0.0022 17.3 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|219852672|ref|YP_002467104.1| - 0.0047 16.0 0.0 0.0069 15.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|219852672|ref|YP_002467104.1| - 0.0096 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein NodS PF05401.6 gi|219852672|ref|YP_002467104.1| - 0.013 14.8 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) CMAS PF02353.15 gi|219852672|ref|YP_002467104.1| - 0.032 13.2 0.0 0.066 12.2 0.0 1.5 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase DNA_methylase PF00145.12 gi|219852672|ref|YP_002467104.1| - 0.075 12.1 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DOT1 PF08123.8 gi|219852672|ref|YP_002467104.1| - 0.14 11.4 0.1 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 MFS_1 PF07690.11 gi|219852673|ref|YP_002467105.1| - 1.1e-36 126.2 40.1 1.1e-36 126.2 27.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219852673|ref|YP_002467105.1| - 3.3e-06 25.9 27.7 0.00044 18.9 5.9 3.1 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|219852673|ref|YP_002467105.1| - 0.11 12.3 5.9 0.098 12.4 0.5 2.9 3 0 0 3 3 3 0 MFS_1 like family MFS_2 PF13347.1 gi|219852673|ref|YP_002467105.1| - 0.79 8.0 36.2 0.53 8.6 6.0 3.7 2 2 1 3 3 3 0 MFS/sugar transport protein OATP PF03137.15 gi|219852673|ref|YP_002467105.1| - 1.5 6.7 18.8 0.82 7.6 0.2 3.9 4 0 0 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family CorA PF01544.13 gi|219852674|ref|YP_002467106.1| - 1.5e-75 253.9 2.9 2e-75 253.5 2.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Pyridox_ox_2 PF12900.2 gi|219852675|ref|YP_002467107.1| - 5e-22 78.2 0.0 5.8e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|219852675|ref|YP_002467107.1| - 0.00025 20.9 0.0 0.00035 20.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1616 PF07760.6 gi|219852676|ref|YP_002467108.1| - 4.1e-39 134.4 1.7 4.5e-39 134.3 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) GPI-anchored PF10342.4 gi|219852676|ref|YP_002467108.1| - 0.041 14.3 0.5 0.06 13.8 0.4 1.3 1 0 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family GATase PF00117.23 gi|219852677|ref|YP_002467109.1| - 4.5e-33 114.3 0.0 5.4e-33 114.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|219852677|ref|YP_002467109.1| - 4.2e-07 29.6 0.0 7.4e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|219852677|ref|YP_002467109.1| - 6.8e-05 22.4 1.2 0.00056 19.4 0.9 2.4 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|219852677|ref|YP_002467109.1| - 0.0019 17.8 0.0 0.035 13.7 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family PAPS_reduct PF01507.14 gi|219852678|ref|YP_002467110.1| - 1.7e-43 148.4 0.0 2.2e-43 148.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|219852678|ref|YP_002467110.1| - 1.1e-16 60.2 0.3 1.9e-16 59.5 0.2 1.3 1 0 0 1 1 1 1 PUA domain Radical_SAM PF04055.16 gi|219852679|ref|YP_002467111.1| - 3.9e-14 53.1 0.8 4.5e-14 52.9 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|219852679|ref|YP_002467111.1| - 4.1e-06 27.0 0.6 1.1e-05 25.7 0.4 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|219852679|ref|YP_002467111.1| - 4.6e-06 26.6 0.0 9.9e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219852679|ref|YP_002467111.1| - 0.00046 20.3 0.1 0.0013 18.8 0.0 1.8 2 1 1 3 3 3 1 4Fe-4S single cluster domain TFIIS_C PF01096.13 gi|219852680|ref|YP_002467112.1| - 1.4e-18 66.2 9.5 1e-17 63.4 2.0 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|219852680|ref|YP_002467112.1| - 1.2e-08 34.5 6.6 1.9e-07 30.6 0.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|219852680|ref|YP_002467112.1| - 1.4e-05 24.8 8.6 0.011 15.4 0.7 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|219852680|ref|YP_002467112.1| - 2.3e-05 24.1 5.0 0.033 13.9 0.5 2.3 2 1 0 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|219852680|ref|YP_002467112.1| - 5.6e-05 22.7 8.5 0.12 12.0 0.0 3.6 3 1 0 3 3 3 2 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|219852680|ref|YP_002467112.1| - 0.00021 21.1 8.5 0.001 18.9 0.2 2.9 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|219852680|ref|YP_002467112.1| - 0.00028 20.2 6.6 0.5 9.8 0.8 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|219852680|ref|YP_002467112.1| - 0.00066 19.2 8.1 0.11 12.1 0.3 2.8 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|219852680|ref|YP_002467112.1| - 0.0013 17.8 10.6 0.006 15.7 0.1 3.2 2 1 0 2 2 2 1 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|219852680|ref|YP_002467112.1| - 0.0044 16.7 7.0 0.043 13.6 0.3 2.4 2 1 0 2 2 2 1 zinc-ribbons Terminase_GpA PF05876.7 gi|219852680|ref|YP_002467112.1| - 0.0062 14.9 2.7 0.0062 14.9 1.9 1.6 1 1 1 2 2 2 1 Phage terminase large subunit (GpA) Baculo_LEF5_C PF11792.3 gi|219852680|ref|YP_002467112.1| - 0.008 15.5 0.3 0.008 15.5 0.2 2.6 3 0 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain zf-TFIIB PF13453.1 gi|219852680|ref|YP_002467112.1| - 0.0087 15.2 0.7 0.0087 15.2 0.5 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger zf-DNA_Pol PF08996.5 gi|219852680|ref|YP_002467112.1| - 0.017 14.5 0.2 0.017 14.5 0.1 2.1 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger zinc_ribbon_5 PF13719.1 gi|219852680|ref|YP_002467112.1| - 0.021 14.3 14.5 4.2 7.0 0.2 4.2 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219852680|ref|YP_002467112.1| - 0.029 14.0 15.0 4.6 7.0 0.3 4.2 3 1 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|219852680|ref|YP_002467112.1| - 0.031 13.9 6.8 0.3 10.7 0.2 3.0 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Ribosomal_S27e PF01667.12 gi|219852680|ref|YP_002467112.1| - 0.049 13.1 6.8 2.9 7.4 0.0 3.4 3 1 0 3 3 3 0 Ribosomal protein S27 HypA PF01155.14 gi|219852680|ref|YP_002467112.1| - 0.064 12.9 8.4 0.1 12.2 0.5 2.7 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|219852680|ref|YP_002467112.1| - 0.082 12.6 7.2 0.34 10.6 0.4 2.4 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Mu-like_Com PF10122.4 gi|219852680|ref|YP_002467112.1| - 0.099 11.7 7.6 0.51 9.4 0.8 3.2 3 1 0 3 3 3 0 Mu-like prophage protein Com Lar_restr_allev PF14354.1 gi|219852680|ref|YP_002467112.1| - 0.13 12.5 8.2 1.9 8.8 0.6 3.4 1 1 2 3 3 3 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|219852680|ref|YP_002467112.1| - 0.14 11.7 0.4 0.14 11.7 0.3 3.2 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Mss51 PF13824.1 gi|219852680|ref|YP_002467112.1| - 0.14 12.0 5.8 2 8.3 0.3 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.11 gi|219852680|ref|YP_002467112.1| - 0.33 10.7 2.2 9.5 6.0 0.3 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|219852680|ref|YP_002467112.1| - 0.52 9.6 15.8 0.11 11.8 0.5 3.6 3 2 0 3 3 3 0 TFIIB zinc-binding Rpr2 PF04032.11 gi|219852680|ref|YP_002467112.1| - 0.74 9.7 9.5 8.4 6.3 2.4 3.0 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-C4_Topoisom PF01396.14 gi|219852680|ref|YP_002467112.1| - 1.3 8.5 11.4 2.9 7.4 0.1 3.4 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|219852680|ref|YP_002467112.1| - 1.4 8.8 11.2 7.1 6.5 0.0 4.1 4 0 0 4 4 4 0 Rubredoxin Nudix_N_2 PF14803.1 gi|219852680|ref|YP_002467112.1| - 1.6 8.4 7.6 38 4.0 0.1 3.9 4 0 0 4 4 4 0 Nudix N-terminal DUF1451 PF07295.6 gi|219852680|ref|YP_002467112.1| - 1.8 8.3 7.3 1.6 8.5 0.1 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|219852680|ref|YP_002467112.1| - 2 7.9 9.9 27 4.3 2.2 3.8 3 1 1 4 4 4 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|219852680|ref|YP_002467112.1| - 2.4 7.9 5.7 12 5.7 0.3 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|219852680|ref|YP_002467112.1| - 3.2 7.6 12.2 9.8e+02 -0.3 8.5 2.9 1 1 0 1 1 1 0 IBR domain zf-RING_4 PF14570.1 gi|219852680|ref|YP_002467112.1| - 3.4 7.3 12.0 2.8 7.5 0.0 3.6 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain Fer4_7 PF12838.2 gi|219852680|ref|YP_002467112.1| - 3.8 7.9 6.6 1.4 9.3 0.4 2.5 3 0 0 3 3 2 0 4Fe-4S dicluster domain Opy2 PF09463.5 gi|219852680|ref|YP_002467112.1| - 3.9 7.6 9.2 6.2 6.9 0.4 2.9 3 0 0 3 3 3 0 Opy2 protein zf-AN1 PF01428.11 gi|219852680|ref|YP_002467112.1| - 4 7.3 9.4 18 5.3 1.2 3.1 3 0 0 3 3 3 0 AN1-like Zinc finger Zn-ribbon_8 PF09723.5 gi|219852680|ref|YP_002467112.1| - 7.1 6.6 16.4 11 6.0 0.1 4.2 3 1 0 3 3 3 0 Zinc ribbon domain Exosortase_EpsH PF09721.5 gi|219852681|ref|YP_002467113.1| - 7.1e-40 136.8 24.7 1e-39 136.3 17.1 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) CDP-OH_P_transf PF01066.16 gi|219852682|ref|YP_002467114.1| - 1.6e-15 57.2 9.8 4.3e-15 55.8 6.8 1.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF2583 PF10762.4 gi|219852682|ref|YP_002467114.1| - 0.11 12.6 0.5 0.35 11.0 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) RibD_C PF01872.12 gi|219852683|ref|YP_002467115.1| - 1.5e-42 145.5 0.1 1.6e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Peptidase_S49 PF01343.13 gi|219852684|ref|YP_002467116.1| - 1.7e-34 118.7 0.2 2.3e-34 118.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|219852684|ref|YP_002467116.1| - 4.5e-06 26.4 0.2 0.0002 21.0 0.2 2.2 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|219852684|ref|YP_002467116.1| - 0.0048 15.7 0.5 0.0048 15.7 0.4 1.7 1 1 1 2 2 2 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|219852684|ref|YP_002467116.1| - 0.028 13.5 0.0 0.071 12.2 0.0 1.7 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family DUF3366 PF11846.3 gi|219852684|ref|YP_002467116.1| - 0.041 13.7 1.0 0.062 13.1 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) TruD PF01142.13 gi|219852685|ref|YP_002467117.1| - 3e-99 332.2 0.0 3.4e-99 332.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|219852686|ref|YP_002467118.1| - 1.5e-39 134.2 0.2 1.7e-39 134.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 CxxCxxCC PF03692.10 gi|219852687|ref|YP_002467119.1| - 7.9e-10 39.0 2.7 2.5e-09 37.4 1.9 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TBP PF00352.16 gi|219852688|ref|YP_002467120.1| - 1.3e-54 181.4 0.7 8.7e-29 98.7 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|219852688|ref|YP_002467120.1| - 3.2e-07 30.3 0.0 0.0089 16.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF4007 PF13182.1 gi|219852688|ref|YP_002467120.1| - 0.03 13.1 0.0 0.94 8.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4007) IFR3_antag PF14754.1 gi|219852688|ref|YP_002467120.1| - 0.08 11.9 0.0 0.098 11.6 0.0 1.2 1 0 0 1 1 1 0 Papain-like auto-proteinase DEAD_assoc PF08494.6 gi|219852689|ref|YP_002467121.1| - 1.3e-35 122.8 0.0 4.9e-35 120.9 0.0 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|219852689|ref|YP_002467121.1| - 2.2e-30 105.3 0.0 3.9e-30 104.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|219852689|ref|YP_002467121.1| - 1.1e-16 60.4 0.1 1e-15 57.3 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|219852689|ref|YP_002467121.1| - 2.7e-05 24.0 0.0 0.00017 21.4 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|219852689|ref|YP_002467121.1| - 0.00082 18.2 0.0 0.0013 17.5 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain zf-ribbon_3 PF13248.1 gi|219852689|ref|YP_002467121.1| - 0.0091 15.1 0.1 0.02 14.0 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain AAA_22 PF13401.1 gi|219852689|ref|YP_002467121.1| - 0.05 13.7 0.1 7.2 6.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain HypA PF01155.14 gi|219852689|ref|YP_002467121.1| - 0.057 13.1 0.4 0.29 10.8 0.0 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|219852689|ref|YP_002467121.1| - 0.15 11.5 0.1 0.46 10.0 0.1 1.8 1 0 0 1 1 1 0 zinc-ribbon domain SecA_DEAD PF07517.9 gi|219852689|ref|YP_002467121.1| - 0.16 11.1 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 SecA DEAD-like domain Zn-ribbon_8 PF09723.5 gi|219852689|ref|YP_002467121.1| - 0.22 11.5 2.2 0.75 9.8 1.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Metallophos PF00149.23 gi|219852690|ref|YP_002467122.1| - 0.00013 21.3 0.2 0.0004 19.8 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|219852690|ref|YP_002467122.1| - 0.045 12.9 0.0 1.9 7.5 0.0 2.1 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF4129 PF13559.1 gi|219852691|ref|YP_002467123.1| - 0.097 12.6 6.4 0.22 11.5 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4129) DNA_pol3_delta2 PF13177.1 gi|219852692|ref|YP_002467124.1| - 1.6e-15 57.1 0.0 1.5e-13 50.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|219852692|ref|YP_002467124.1| - 2.1e-15 57.0 0.0 1.9e-14 54.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rep_fac_C PF08542.6 gi|219852692|ref|YP_002467124.1| - 8.7e-14 51.2 0.0 1.5e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Replication factor C C-terminal domain RuvB_N PF05496.7 gi|219852692|ref|YP_002467124.1| - 4.1e-08 32.5 0.1 5.8e-07 28.8 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|219852692|ref|YP_002467124.1| - 5.4e-07 29.8 0.1 0.053 13.6 0.0 2.7 2 1 1 3 3 3 2 AAA domain Rad17 PF03215.10 gi|219852692|ref|YP_002467124.1| - 4.2e-06 25.7 0.0 0.039 12.6 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|219852692|ref|YP_002467124.1| - 4.5e-06 26.7 0.3 0.0013 18.7 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|219852692|ref|YP_002467124.1| - 4.6e-06 26.5 0.0 9.3e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|219852692|ref|YP_002467124.1| - 0.00036 20.0 0.0 0.00055 19.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activ_2 PF14532.1 gi|219852692|ref|YP_002467124.1| - 0.00043 20.3 0.0 0.00077 19.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|219852692|ref|YP_002467124.1| - 0.00093 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|219852692|ref|YP_002467124.1| - 0.0013 17.9 0.0 0.4 9.7 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|219852692|ref|YP_002467124.1| - 0.0029 17.8 0.0 0.0044 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|219852692|ref|YP_002467124.1| - 0.0049 15.6 0.0 0.11 11.1 0.0 2.4 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|219852692|ref|YP_002467124.1| - 0.0087 16.8 0.0 0.018 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|219852692|ref|YP_002467124.1| - 0.0099 14.8 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|219852692|ref|YP_002467124.1| - 0.01 15.2 0.0 0.023 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|219852692|ref|YP_002467124.1| - 0.011 15.2 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|219852692|ref|YP_002467124.1| - 0.012 15.2 0.0 0.056 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|219852692|ref|YP_002467124.1| - 0.043 13.7 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|219852692|ref|YP_002467124.1| - 0.071 13.0 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|219852692|ref|YP_002467124.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|219852692|ref|YP_002467124.1| - 0.087 12.2 0.2 0.18 11.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|219852692|ref|YP_002467124.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TPR_14 PF13428.1 gi|219852692|ref|YP_002467124.1| - 0.35 11.6 1.9 16 6.4 0.0 3.4 3 0 0 3 3 2 0 Tetratricopeptide repeat MCM PF00493.18 gi|219852693|ref|YP_002467125.1| - 1.3e-124 415.3 0.2 3.8e-65 219.8 0.0 2.9 3 0 0 3 3 3 2 MCM2/3/5 family MCM_N PF14551.1 gi|219852693|ref|YP_002467125.1| - 6.3e-13 49.2 0.6 2.3e-12 47.4 0.2 2.2 2 0 0 2 2 2 1 MCM N-terminal domain LAGLIDADG_3 PF14528.1 gi|219852693|ref|YP_002467125.1| - 9.1e-09 35.4 0.0 0.00038 20.6 0.0 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Mg_chelatase PF01078.16 gi|219852693|ref|YP_002467125.1| - 0.0012 18.0 0.2 8.5 5.4 0.0 3.9 3 1 1 4 4 4 2 Magnesium chelatase, subunit ChlI RTBV_P46 PF06216.6 gi|219852693|ref|YP_002467125.1| - 0.0045 15.8 1.4 0.0051 15.7 0.1 1.6 2 0 0 2 2 2 1 Rice tungro bacilliform virus P46 protein AAA_5 PF07728.9 gi|219852693|ref|YP_002467125.1| - 0.0084 15.8 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mem_trans PF03547.13 gi|219852694|ref|YP_002467126.1| - 2.8e-36 124.6 30.8 8.2e-20 70.4 9.7 2.0 1 1 1 2 2 2 2 Membrane transport protein Strabismus PF06638.6 gi|219852694|ref|YP_002467126.1| - 0.36 9.1 1.0 0.63 8.2 0.7 1.3 1 0 0 1 1 1 0 Strabismus protein Rotamase PF00639.16 gi|219852695|ref|YP_002467127.1| - 1.7e-28 99.1 0.0 2.1e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.1 gi|219852695|ref|YP_002467127.1| - 2.5e-27 95.4 0.1 2.7e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.1 gi|219852695|ref|YP_002467127.1| - 3.2e-10 40.6 0.0 3.6e-10 40.5 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain MCPsignal PF00015.16 gi|219852696|ref|YP_002467128.1| - 4.5e-48 163.6 47.4 7.9e-45 153.0 19.8 2.9 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|219852696|ref|YP_002467128.1| - 6.2e-17 61.8 0.0 3.9e-07 30.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219852696|ref|YP_002467128.1| - 1.2e-13 50.8 0.0 1e-06 28.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219852696|ref|YP_002467128.1| - 7e-12 44.7 0.1 4e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219852696|ref|YP_002467128.1| - 1.2e-11 44.6 0.1 2.3e-05 24.3 0.0 3.1 2 0 0 2 2 2 2 PAS fold Cortex-I_coil PF09304.5 gi|219852696|ref|YP_002467128.1| - 0.0062 16.5 4.1 0.4 10.7 0.0 3.0 3 0 0 3 3 3 1 Cortexillin I, coiled coil PAS_7 PF12860.2 gi|219852696|ref|YP_002467128.1| - 0.053 13.5 2.9 13 5.8 0.0 3.9 4 0 0 4 4 4 0 PAS fold ERO1 PF04137.10 gi|219852696|ref|YP_002467128.1| - 0.089 11.7 0.3 0.15 11.0 0.2 1.3 1 0 0 1 1 1 0 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) IFT57 PF10498.4 gi|219852696|ref|YP_002467128.1| - 0.17 10.6 8.2 0.51 9.0 3.0 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DASH_Dad2 PF08654.5 gi|219852696|ref|YP_002467128.1| - 0.86 9.6 16.0 1.3 9.0 2.7 3.8 2 2 0 2 2 2 0 DASH complex subunit Dad2 DUF948 PF06103.6 gi|219852696|ref|YP_002467128.1| - 0.94 9.3 16.4 13 5.7 0.2 4.7 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|219852696|ref|YP_002467128.1| - 2.3 7.9 23.7 0.28 10.9 1.0 4.2 2 2 2 4 4 4 0 Laminin Domain II Syntaxin PF00804.20 gi|219852696|ref|YP_002467128.1| - 2.5 8.3 11.6 25 5.1 0.7 4.1 1 1 1 2 2 2 0 Syntaxin Laminin_I PF06008.9 gi|219852696|ref|YP_002467128.1| - 3 7.0 23.1 0.34 10.2 5.4 3.2 1 1 0 2 2 2 0 Laminin Domain I Syntaxin-6_N PF09177.6 gi|219852696|ref|YP_002467128.1| - 3.4 8.1 8.2 8.2 6.9 0.3 3.9 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Reo_sigmaC PF04582.7 gi|219852696|ref|YP_002467128.1| - 3.7 6.6 24.9 0.52 9.4 3.5 3.3 1 1 2 4 4 4 0 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|219852696|ref|YP_002467128.1| - 6.1 6.6 14.9 9.5 6.0 2.5 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3540 PF12059.3 gi|219852696|ref|YP_002467128.1| - 6.2 6.4 22.4 0.16 11.5 4.7 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3540) DUF4254 PF14063.1 gi|219852696|ref|YP_002467128.1| - 8.4 5.9 9.5 6.3 6.3 1.4 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF4254) Acetyltransf_1 PF00583.19 gi|219852697|ref|YP_002467129.1| - 4.3e-12 45.8 0.0 6.4e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|219852697|ref|YP_002467129.1| - 8.9e-11 41.8 0.0 1.2e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|219852697|ref|YP_002467129.1| - 1.2e-08 35.0 0.0 1.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|219852697|ref|YP_002467129.1| - 0.00013 21.8 0.0 0.00018 21.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|219852697|ref|YP_002467129.1| - 0.00027 20.6 0.0 0.00051 19.7 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|219852697|ref|YP_002467129.1| - 0.037 13.9 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|219852697|ref|YP_002467129.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF2156 PF09924.4 gi|219852698|ref|YP_002467130.1| - 1.2e-50 172.0 0.0 1.5e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) Prefoldin_2 PF01920.15 gi|219852699|ref|YP_002467131.1| - 1.4e-23 82.6 18.7 1.6e-23 82.5 13.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit ADIP PF11559.3 gi|219852699|ref|YP_002467131.1| - 0.0024 17.7 10.3 0.033 14.1 1.4 2.1 2 0 0 2 2 2 2 Afadin- and alpha -actinin-Binding Prefoldin PF02996.12 gi|219852699|ref|YP_002467131.1| - 0.0044 16.6 3.8 0.0044 16.6 2.7 2.4 1 1 1 2 2 2 1 Prefoldin subunit T6SS-SciN PF12790.2 gi|219852699|ref|YP_002467131.1| - 0.024 14.2 0.4 0.041 13.4 0.0 1.5 2 0 0 2 2 2 0 Type VI secretion lipoprotein TPR_MLP1_2 PF07926.7 gi|219852699|ref|YP_002467131.1| - 0.038 13.7 14.8 0.051 13.3 10.3 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF948 PF06103.6 gi|219852699|ref|YP_002467131.1| - 0.038 13.8 6.9 0.39 10.5 0.5 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|219852699|ref|YP_002467131.1| - 0.045 13.6 13.1 0.7 9.7 3.4 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BMFP PF04380.8 gi|219852699|ref|YP_002467131.1| - 0.076 13.1 12.2 1.7 8.8 0.9 3.1 3 0 0 3 3 3 0 Membrane fusogenic activity DUF3037 PF11236.3 gi|219852699|ref|YP_002467131.1| - 0.085 12.9 1.0 0.15 12.0 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3037) Ring_hydroxyl_B PF00866.13 gi|219852699|ref|YP_002467131.1| - 0.12 12.0 1.1 2.1 8.0 0.8 2.1 1 1 0 1 1 1 0 Ring hydroxylating beta subunit Filament PF00038.16 gi|219852699|ref|YP_002467131.1| - 0.13 11.7 11.5 0.18 11.2 8.0 1.2 1 0 0 1 1 1 0 Intermediate filament protein Flavi_NS1 PF00948.16 gi|219852699|ref|YP_002467131.1| - 0.13 10.6 1.4 0.14 10.5 1.0 1.1 1 0 0 1 1 1 0 Flavivirus non-structural Protein NS1 DUF3584 PF12128.3 gi|219852699|ref|YP_002467131.1| - 0.18 9.1 13.6 0.2 8.9 9.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PspA_IM30 PF04012.7 gi|219852699|ref|YP_002467131.1| - 0.22 10.8 14.5 0.31 10.3 10.0 1.2 1 0 0 1 1 1 0 PspA/IM30 family Tropomyosin_1 PF12718.2 gi|219852699|ref|YP_002467131.1| - 0.29 10.9 16.6 2.6 7.8 11.5 2.0 1 1 0 1 1 1 0 Tropomyosin like Sipho_Gp157 PF05565.6 gi|219852699|ref|YP_002467131.1| - 0.29 10.6 12.0 0.091 12.3 2.6 2.1 1 1 1 2 2 2 0 Siphovirus Gp157 Frankia_peptide PF14407.1 gi|219852699|ref|YP_002467131.1| - 0.45 10.3 4.4 0.19 11.5 1.0 1.8 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. KfrA_N PF11740.3 gi|219852699|ref|YP_002467131.1| - 0.52 10.7 10.4 0.12 12.8 4.3 1.8 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Viral_P18 PF04521.8 gi|219852699|ref|YP_002467131.1| - 0.58 9.6 7.4 0.32 10.4 0.9 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF2968 PF11180.3 gi|219852699|ref|YP_002467131.1| - 0.64 9.3 12.7 0.28 10.5 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) GAS PF13851.1 gi|219852699|ref|YP_002467131.1| - 0.66 9.1 17.1 1.5 8.0 11.8 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Pox_A11 PF05061.8 gi|219852699|ref|YP_002467131.1| - 1.1 8.3 7.4 1.3 8.0 5.1 1.0 1 0 0 1 1 1 0 Poxvirus A11 Protein Nup54 PF13874.1 gi|219852699|ref|YP_002467131.1| - 1.2 8.8 12.4 0.38 10.3 1.1 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 PspB PF06667.7 gi|219852699|ref|YP_002467131.1| - 1.5 8.8 4.4 0.46 10.4 0.4 2.1 2 1 0 2 2 2 0 Phage shock protein B CDC37_N PF03234.9 gi|219852699|ref|YP_002467131.1| - 1.6 9.0 9.6 2.5 8.3 6.6 1.3 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding FlxA PF14282.1 gi|219852699|ref|YP_002467131.1| - 2.3 8.2 25.9 0.12 12.3 2.9 2.5 2 1 0 2 2 2 0 FlxA-like protein IncA PF04156.9 gi|219852699|ref|YP_002467131.1| - 2.6 7.5 17.5 3.1e+02 0.8 11.9 2.0 1 1 0 1 1 1 0 IncA protein NPV_P10 PF05531.7 gi|219852699|ref|YP_002467131.1| - 2.6 8.3 9.1 5.8 7.2 0.9 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YlqD PF11068.3 gi|219852699|ref|YP_002467131.1| - 2.9 7.9 22.6 0.37 10.8 5.3 2.1 1 1 1 2 2 2 0 YlqD protein MbeB_N PF04837.7 gi|219852699|ref|YP_002467131.1| - 3.4 7.8 12.0 0.35 10.9 0.5 3.1 2 1 1 3 3 3 0 MbeB-like, N-term conserved region DUF972 PF06156.8 gi|219852699|ref|YP_002467131.1| - 3.5 8.0 14.6 7.3 6.9 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Herpes_UL6 PF01763.11 gi|219852699|ref|YP_002467131.1| - 3.7 5.6 11.6 9.3 4.2 1.1 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like DUF4140 PF13600.1 gi|219852699|ref|YP_002467131.1| - 4.7 7.7 9.4 3.2 8.2 1.6 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Laminin_II PF06009.7 gi|219852699|ref|YP_002467131.1| - 5.2 6.8 12.5 13 5.5 1.2 2.0 1 1 1 2 2 2 0 Laminin Domain II YscO PF07321.7 gi|219852699|ref|YP_002467131.1| - 5.7 6.7 20.5 1.9 8.3 4.3 2.0 1 1 0 2 2 2 0 Type III secretion protein YscO DUF464 PF04327.7 gi|219852699|ref|YP_002467131.1| - 5.9 7.2 7.1 16 5.7 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF464) Spc24 PF08286.6 gi|219852699|ref|YP_002467131.1| - 6.4 6.4 16.2 2.2 8.0 3.0 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Swi5 PF07061.6 gi|219852699|ref|YP_002467131.1| - 7 6.5 8.8 3.2 7.5 0.3 2.4 2 1 0 2 2 2 0 Swi5 HMGL-like PF00682.14 gi|219852700|ref|YP_002467132.1| - 3e-75 252.9 5.1 5.2e-75 252.1 3.6 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|219852700|ref|YP_002467132.1| - 1.1e-26 93.1 0.3 5.2e-26 91.0 0.0 2.2 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Lipase_GDSL_2 PF13472.1 gi|219852700|ref|YP_002467132.1| - 0.0041 17.2 0.0 0.0095 16.0 0.0 1.6 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Erythro_esteras PF05139.9 gi|219852701|ref|YP_002467133.1| - 2.3e-53 181.6 0.0 2.7e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase SDF PF00375.13 gi|219852702|ref|YP_002467134.1| - 4.7e-56 190.2 25.2 4.7e-56 190.2 17.5 2.0 1 1 0 1 1 1 1 Sodium:dicarboxylate symporter family SBP_bac_3 PF00497.15 gi|219852702|ref|YP_002467134.1| - 8.2e-33 113.5 0.4 1.5e-32 112.6 0.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 ECF-ribofla_trS PF07155.7 gi|219852702|ref|YP_002467134.1| - 0.0011 18.7 5.1 0.0011 18.7 3.5 2.4 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component Nterm_IS4 PF13006.2 gi|219852702|ref|YP_002467134.1| - 0.023 14.7 0.0 0.09 12.8 0.0 1.9 2 0 0 2 2 2 0 Insertion element 4 transposase N-terminal Rubrerythrin PF02915.12 gi|219852703|ref|YP_002467135.1| - 1.1e-17 64.5 5.8 9.7e-17 61.5 3.9 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|219852703|ref|YP_002467135.1| - 3e-08 33.6 0.6 5.2e-08 32.9 0.4 1.4 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|219852703|ref|YP_002467135.1| - 7.2e-08 32.6 0.9 3.8e-05 23.9 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF3231 PF11553.3 gi|219852703|ref|YP_002467135.1| - 1.1e-06 28.2 0.3 0.0015 18.0 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3231) Ferritin PF00210.19 gi|219852703|ref|YP_002467135.1| - 0.0072 16.0 2.1 0.037 13.7 0.1 2.0 1 1 0 2 2 2 1 Ferritin-like domain TRCF PF03461.10 gi|219852703|ref|YP_002467135.1| - 0.014 15.3 1.6 0.66 9.9 0.1 2.2 2 0 0 2 2 2 0 TRCF domain COQ7 PF03232.8 gi|219852703|ref|YP_002467135.1| - 0.017 14.6 0.8 2.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF3066 PF11266.3 gi|219852703|ref|YP_002467135.1| - 0.02 14.6 0.4 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3066) Imm43 PF15602.1 gi|219852703|ref|YP_002467135.1| - 0.065 13.1 0.0 0.1 12.5 0.0 1.4 1 1 0 1 1 1 0 Immunity protein 43 DUF1657 PF07870.6 gi|219852703|ref|YP_002467135.1| - 1.1 9.0 4.1 7.4 6.3 0.4 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF1657) Lipase_GDSL_2 PF13472.1 gi|219852704|ref|YP_002467136.1| - 4.2e-14 53.0 1.3 4.2e-14 53.0 0.2 1.5 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219852704|ref|YP_002467136.1| - 3.2e-11 43.5 0.5 9.7e-11 41.9 0.4 1.8 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|219852704|ref|YP_002467136.1| - 0.0014 18.3 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family tRNA-synt_2 PF00152.15 gi|219852705|ref|YP_002467137.1| - 8e-95 317.4 2.7 9.8e-95 317.1 1.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|219852705|ref|YP_002467137.1| - 7.8e-16 57.6 0.3 1.8e-15 56.5 0.2 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|219852705|ref|YP_002467137.1| - 1.4e-07 30.9 0.8 6.3e-05 22.2 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class II core domain (F) Rhodanese PF00581.15 gi|219852706|ref|YP_002467138.1| - 3.8e-22 78.7 0.0 4.3e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain TcpA PF05946.7 gi|219852706|ref|YP_002467138.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Toxin-coregulated pilus subunit TcpA PQQ_2 PF13360.1 gi|219852707|ref|YP_002467139.1| - 4.1e-09 36.2 2.4 0.0011 18.5 0.3 3.0 1 1 1 2 2 2 2 PQQ-like domain WD40 PF00400.27 gi|219852707|ref|YP_002467139.1| - 1.9e-05 24.3 6.8 0.14 12.0 0.0 5.1 6 1 0 6 6 6 2 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|219852707|ref|YP_002467139.1| - 0.0012 19.0 17.6 0.0047 17.1 0.1 6.4 7 0 0 7 7 7 2 PQQ-like domain B_lectin PF01453.19 gi|219852707|ref|YP_002467139.1| - 0.15 11.9 1.5 24 4.8 0.0 3.5 3 0 0 3 3 3 0 D-mannose binding lectin DUF475 PF04332.10 gi|219852709|ref|YP_002467141.1| - 5.7e-45 154.1 10.0 6.9e-45 153.8 7.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.11 gi|219852709|ref|YP_002467141.1| - 5e-20 71.7 9.9 1.3e-17 63.7 6.9 2.2 1 1 0 1 1 1 1 Integral membrane protein TerC family Methyltransf_6 PF03737.10 gi|219852710|ref|YP_002467142.1| - 1.6e-37 128.7 1.1 1.6e-37 128.7 0.7 2.1 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|219852710|ref|YP_002467142.1| - 1.2e-20 73.9 7.2 2.1e-20 73.0 4.0 2.1 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.14 gi|219852710|ref|YP_002467142.1| - 2.1e-05 24.2 0.1 3.6e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 HMGL-like PcrB PF01884.12 gi|219852710|ref|YP_002467142.1| - 0.0043 16.3 1.1 0.0043 16.3 0.8 2.3 3 0 0 3 3 3 1 PcrB family Ribul_P_3_epim PF00834.14 gi|219852710|ref|YP_002467142.1| - 0.022 13.8 1.6 0.044 12.9 1.1 1.5 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|219852710|ref|YP_002467142.1| - 0.044 12.3 1.5 0.11 11.0 0.3 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|219852710|ref|YP_002467142.1| - 0.045 13.0 5.4 0.018 14.3 1.2 2.3 3 1 0 3 3 3 0 Histidine biosynthesis protein ACT PF01842.20 gi|219852711|ref|YP_002467143.1| - 6.7e-16 57.4 1.1 1.2e-07 31.0 0.0 3.1 1 1 2 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|219852711|ref|YP_002467143.1| - 2.1e-09 36.7 0.1 6.3e-05 22.4 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|219852711|ref|YP_002467143.1| - 2.8e-08 33.9 0.0 0.0014 18.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|219852711|ref|YP_002467143.1| - 0.002 17.7 0.0 0.03 14.0 0.0 2.1 2 0 0 2 2 2 1 ACT domain AMP-binding_C_2 PF14535.1 gi|219852712|ref|YP_002467144.1| - 3.7e-32 110.2 0.0 1e-31 108.8 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|219852712|ref|YP_002467144.1| - 1.9e-19 69.3 0.7 4e-19 68.2 0.5 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|219852712|ref|YP_002467144.1| - 6.8e-05 21.7 0.0 0.0047 15.6 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE AMP-binding_C_2 PF14535.1 gi|219852713|ref|YP_002467145.1| - 3.6e-30 103.8 0.1 9.4e-30 102.5 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|219852713|ref|YP_002467145.1| - 3.2e-20 71.9 0.8 1.9e-19 69.3 0.6 1.9 1 1 0 1 1 1 1 AMP-binding enzyme Glycos_trans_3N PF02885.12 gi|219852714|ref|YP_002467146.1| - 5.1e-14 51.5 0.0 1e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|219852714|ref|YP_002467146.1| - 2.3e-13 50.1 3.4 9.8e-13 48.0 0.3 2.6 3 1 0 3 3 3 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|219852714|ref|YP_002467146.1| - 1.4e-12 46.8 0.0 3e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.16 gi|219852714|ref|YP_002467146.1| - 0.0069 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_3 PF13437.1 gi|219852714|ref|YP_002467146.1| - 0.015 15.6 0.0 0.043 14.1 0.0 1.7 1 0 0 1 1 1 0 HlyD family secretion protein DUF2254 PF10011.4 gi|219852714|ref|YP_002467146.1| - 0.018 13.4 0.0 0.029 12.8 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Biotin_lipoyl_2 PF13533.1 gi|219852714|ref|YP_002467146.1| - 0.04 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like HlyD_2 PF12700.2 gi|219852714|ref|YP_002467146.1| - 0.14 11.2 0.0 0.35 9.9 0.0 1.6 1 0 0 1 1 1 0 HlyD family secretion protein DUF4382 PF14321.1 gi|219852715|ref|YP_002467147.1| - 0.086 12.9 0.1 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4382) SVA PF05326.6 gi|219852715|ref|YP_002467147.1| - 0.09 12.5 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Seminal vesicle autoantigen (SVA) COXG PF06240.8 gi|219852715|ref|YP_002467147.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Epimerase PF01370.16 gi|219852716|ref|YP_002467148.1| - 1.6e-55 188.1 0.0 2e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|219852716|ref|YP_002467148.1| - 4.8e-10 38.6 0.0 7.7e-05 21.5 0.0 2.3 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|219852716|ref|YP_002467148.1| - 2e-06 27.9 0.0 4.6e-06 26.7 0.0 1.7 1 1 1 2 2 2 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|219852716|ref|YP_002467148.1| - 0.00021 20.3 0.0 0.00083 18.3 0.0 1.8 2 0 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|219852716|ref|YP_002467148.1| - 0.00041 19.3 0.0 1.1 8.1 0.0 2.8 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|219852716|ref|YP_002467148.1| - 0.011 14.7 0.6 0.15 10.9 0.0 2.1 1 1 0 2 2 2 0 Male sterility protein adh_short PF00106.20 gi|219852716|ref|YP_002467148.1| - 0.036 13.9 0.2 0.09 12.6 0.1 1.8 1 1 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.8 gi|219852716|ref|YP_002467148.1| - 0.037 13.2 0.2 7.1 5.8 0.1 2.9 3 0 0 3 3 3 0 NmrA-like family Glyco_trans_1_3 PF13528.1 gi|219852717|ref|YP_002467149.1| - 6.5e-18 64.9 0.0 9e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|219852717|ref|YP_002467149.1| - 0.00072 19.2 0.0 0.0019 17.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain PrpR_N PF06506.6 gi|219852717|ref|YP_002467149.1| - 0.15 11.4 0.2 3 7.1 0.0 3.0 4 0 0 4 4 4 0 Propionate catabolism activator Epimerase PF01370.16 gi|219852718|ref|YP_002467150.1| - 4.5e-65 219.3 0.0 5.9e-65 218.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|219852718|ref|YP_002467150.1| - 7e-10 38.2 0.0 9.6e-10 37.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|219852718|ref|YP_002467150.1| - 1.5e-05 24.1 0.0 6.4e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|219852718|ref|YP_002467150.1| - 5.3e-05 23.0 0.0 0.00014 21.7 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NAD_binding_10 PF13460.1 gi|219852718|ref|YP_002467150.1| - 0.0005 20.1 0.0 0.0014 18.7 0.0 1.7 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|219852718|ref|YP_002467150.1| - 0.095 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family adh_short PF00106.20 gi|219852718|ref|YP_002467150.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Hexapep PF00132.19 gi|219852719|ref|YP_002467151.1| - 3.7e-12 45.1 7.1 9.5e-11 40.7 1.9 2.3 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219852719|ref|YP_002467151.1| - 7e-11 41.4 1.4 7e-11 41.4 1.0 2.0 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase UDPG_MGDP_dh_N PF03721.9 gi|219852720|ref|YP_002467152.1| - 7.5e-41 139.5 1.8 6.8e-31 107.0 0.1 2.8 2 1 1 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|219852720|ref|YP_002467152.1| - 2.5e-25 88.5 0.0 4.9e-25 87.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|219852720|ref|YP_002467152.1| - 5.2e-21 74.7 0.0 5.2e-20 71.5 0.0 2.4 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|219852720|ref|YP_002467152.1| - 1.3e-07 31.4 0.2 0.017 14.8 0.1 3.6 3 1 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|219852720|ref|YP_002467152.1| - 2.2e-06 27.6 0.0 2.7e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|219852720|ref|YP_002467152.1| - 1.6e-05 24.1 0.0 0.01 15.0 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.12 gi|219852720|ref|YP_002467152.1| - 0.0005 19.0 0.1 0.11 11.4 0.1 2.4 2 0 0 2 2 2 2 Prephenate dehydrogenase TrkA_N PF02254.13 gi|219852720|ref|YP_002467152.1| - 0.0012 18.8 0.9 0.94 9.4 0.1 3.7 3 1 0 3 3 3 1 TrkA-N domain F420_oxidored PF03807.12 gi|219852720|ref|YP_002467152.1| - 0.0044 17.4 0.9 1.2 9.6 0.1 3.5 4 0 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent DUF1884 PF08967.5 gi|219852720|ref|YP_002467152.1| - 0.011 15.7 0.0 0.041 13.9 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) NAD_binding_11 PF14833.1 gi|219852720|ref|YP_002467152.1| - 0.021 14.8 0.0 0.049 13.7 0.0 1.6 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Pyr_redox PF00070.22 gi|219852720|ref|YP_002467152.1| - 0.042 14.2 0.5 20 5.6 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|219852721|ref|YP_002467153.1| - 2e-64 217.2 0.0 2.4e-64 217.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|219852721|ref|YP_002467153.1| - 6.8e-24 84.0 0.0 9.4e-24 83.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|219852721|ref|YP_002467153.1| - 8.3e-18 64.2 0.2 6e-17 61.4 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|219852721|ref|YP_002467153.1| - 6.4e-16 58.0 0.0 9.3e-16 57.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|219852721|ref|YP_002467153.1| - 6.8e-13 49.0 0.0 8.4e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|219852721|ref|YP_002467153.1| - 7.4e-10 38.1 0.0 3.9e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|219852721|ref|YP_002467153.1| - 9.7e-07 28.8 0.1 2.3e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|219852721|ref|YP_002467153.1| - 8.7e-06 25.1 0.1 1.3e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|219852721|ref|YP_002467153.1| - 0.0017 18.3 0.1 0.0039 17.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|219852721|ref|YP_002467153.1| - 0.0037 17.1 0.0 0.0065 16.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Ldh_1_N PF00056.18 gi|219852721|ref|YP_002467153.1| - 0.0088 15.8 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain DUF1188 PF06690.6 gi|219852721|ref|YP_002467153.1| - 0.11 11.6 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) KR PF08659.5 gi|219852721|ref|YP_002467153.1| - 0.15 11.6 0.2 0.55 9.8 0.1 2.0 1 1 0 1 1 1 0 KR domain DUF2150 PF09920.4 gi|219852723|ref|YP_002467155.1| - 1.9e-59 200.4 0.2 2.1e-59 200.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) tRNA_anti-codon PF01336.20 gi|219852724|ref|YP_002467156.1| - 0.00027 20.7 0.3 0.00074 19.3 0.2 1.8 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain CbiQ PF02361.11 gi|219852724|ref|YP_002467156.1| - 0.046 13.2 1.0 0.053 13.0 0.7 1.2 1 0 0 1 1 1 0 Cobalt transport protein Rep_fac-A_3 PF08661.6 gi|219852724|ref|YP_002467156.1| - 0.061 13.2 0.0 0.096 12.5 0.0 1.4 1 1 0 1 1 1 0 Replication factor A protein 3 PUA PF01472.15 gi|219852724|ref|YP_002467156.1| - 0.074 12.7 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 PUA domain Sugar_tr PF00083.19 gi|219852724|ref|YP_002467156.1| - 0.5 8.8 4.4 0.63 8.5 3.0 1.1 1 0 0 1 1 1 0 Sugar (and other) transporter Form_Nir_trans PF01226.12 gi|219852725|ref|YP_002467157.1| - 2.8e-78 262.2 34.9 3.3e-78 262.0 24.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter CBM_6 PF03422.10 gi|219852726|ref|YP_002467158.1| - 1.2e-61 206.3 34.5 5.6e-19 68.5 1.5 6.4 6 2 0 6 6 6 4 Carbohydrate binding module (family 6) Beta_helix PF13229.1 gi|219852726|ref|YP_002467158.1| - 7.4e-08 32.3 12.0 7.4e-08 32.3 8.3 4.1 3 1 2 5 5 5 3 Right handed beta helix region DUF1743 PF08489.6 gi|219852727|ref|YP_002467159.1| - 1.8e-09 37.3 0.2 8.1e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) DUF1743 PF08489.6 gi|219852728|ref|YP_002467160.1| - 1.1e-20 73.5 0.0 9.2e-20 70.5 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) DUF2249 PF10006.4 gi|219852728|ref|YP_002467160.1| - 0.07 12.7 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Radical_SAM PF04055.16 gi|219852729|ref|YP_002467161.1| - 7.1e-08 32.8 0.2 3.2e-07 30.6 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily TPP_enzyme_C PF02775.16 gi|219852730|ref|YP_002467162.1| - 3.1e-10 39.8 0.0 1.1e-09 38.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|219852730|ref|YP_002467162.1| - 4.3e-05 23.0 0.6 0.19 11.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HMGL-like PF00682.14 gi|219852731|ref|YP_002467163.1| - 8.1e-70 235.1 0.9 1e-69 234.7 0.6 1.1 1 0 0 1 1 1 1 HMGL-like MR_MLE_C PF13378.1 gi|219852731|ref|YP_002467163.1| - 0.5 10.3 5.2 2.4 8.1 1.4 3.1 3 1 0 3 3 3 0 Enolase C-terminal domain-like Aconitase PF00330.15 gi|219852732|ref|YP_002467164.1| - 2.5e-68 230.6 2.0 2.3e-47 161.5 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|219852733|ref|YP_002467165.1| - 1.6e-18 67.0 0.1 2.7e-18 66.3 0.0 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|219852735|ref|YP_002467167.1| - 3.7e-91 305.6 0.0 1.6e-90 303.6 0.0 1.7 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF3823 PF12866.2 gi|219852736|ref|YP_002467168.1| - 1.6e-05 24.5 0.1 0.0026 17.3 0.0 2.3 2 1 0 2 2 2 2 Protein of unknown function (DUF3823) A2M_N PF01835.14 gi|219852736|ref|YP_002467168.1| - 3.4e-05 24.0 0.2 0.0028 17.8 0.1 2.4 1 1 0 2 2 2 2 MG2 domain Radical_SAM PF04055.16 gi|219852737|ref|YP_002467169.1| - 1e-05 25.7 0.3 3.8e-05 23.9 0.2 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Saccharop_dh_N PF04455.7 gi|219852738|ref|YP_002467170.1| - 6.1e-39 132.2 0.0 1.1e-38 131.4 0.0 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region NTP_transf_3 PF12804.2 gi|219852739|ref|YP_002467171.1| - 5e-19 68.9 0.1 5.2e-19 68.8 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|219852739|ref|YP_002467171.1| - 0.001 18.4 0.0 0.002 17.4 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|219852739|ref|YP_002467171.1| - 0.0017 18.0 0.0 0.0025 17.4 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase Aminotran_1_2 PF00155.16 gi|219852740|ref|YP_002467172.1| - 3.5e-38 131.4 0.0 6.2e-31 107.6 0.0 2.0 1 1 1 2 2 2 2 Aminotransferase class I and II RHH_1 PF01402.16 gi|219852741|ref|YP_002467173.1| - 1.7e-07 30.7 0.1 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|219852741|ref|YP_002467173.1| - 0.0032 17.6 0.0 0.0034 17.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|219852741|ref|YP_002467173.1| - 0.0042 16.8 0.2 0.0056 16.4 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) FtsZ_C PF12327.3 gi|219852742|ref|YP_002467174.1| - 4.2e-35 119.7 1.5 1e-33 115.2 0.1 2.8 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|219852742|ref|YP_002467174.1| - 1.1e-33 116.8 2.0 5.6e-33 114.5 1.4 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain CPSase_L_chain PF00289.17 gi|219852742|ref|YP_002467174.1| - 0.0086 16.1 0.6 0.15 12.2 0.0 2.9 4 0 0 4 4 4 1 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF89 PF01937.14 gi|219852743|ref|YP_002467175.1| - 2e-43 148.5 0.0 2.2e-43 148.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 Robl_LC7 PF03259.12 gi|219852744|ref|YP_002467176.1| - 7.4e-11 41.4 0.0 1.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain Response_reg PF00072.19 gi|219852745|ref|YP_002467177.1| - 3.4e-22 78.5 0.1 6e-22 77.7 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|219852746|ref|YP_002467178.1| - 5.5e-21 74.6 0.7 7e-21 74.3 0.5 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF3365 PF11845.3 gi|219852746|ref|YP_002467178.1| - 0.03 14.1 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3365) RNA_pol_Rpb5_C PF01191.14 gi|219852747|ref|YP_002467179.1| - 6.2e-28 96.2 0.5 6.9e-28 96.0 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|219852748|ref|YP_002467180.1| - 4.9e-54 182.3 0.0 5.8e-54 182.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|219852748|ref|YP_002467180.1| - 1.8e-24 85.2 0.0 3.6e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.9 gi|219852748|ref|YP_002467180.1| - 2e-16 60.0 0.4 8.8e-16 57.8 0.3 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.23 gi|219852749|ref|YP_002467181.1| - 1.4e-126 422.3 0.0 1.9e-126 421.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|219852749|ref|YP_002467181.1| - 1.4e-29 102.1 0.5 2.7e-29 101.2 0.4 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|219852749|ref|YP_002467181.1| - 2.2e-20 72.2 0.1 4.8e-20 71.1 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|219852749|ref|YP_002467181.1| - 8.3e-13 48.0 1.6 1.7e-12 47.0 1.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DNA_RNApol_7kD PF03604.8 gi|219852749|ref|YP_002467181.1| - 0.33 10.4 1.4 0.66 9.4 1.0 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|219852749|ref|YP_002467181.1| - 0.95 8.8 2.9 5.6 6.3 2.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.7 gi|219852750|ref|YP_002467182.1| - 2.1e-87 293.5 0.0 1e-86 291.2 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|219852750|ref|YP_002467182.1| - 9.8e-63 211.0 0.0 1.6e-62 210.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|219852750|ref|YP_002467182.1| - 7.5e-32 110.2 0.0 1.6e-31 109.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|219852750|ref|YP_002467182.1| - 1.6e-31 109.6 0.1 3.5e-31 108.4 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|219852750|ref|YP_002467182.1| - 1.8e-29 101.6 0.0 3.3e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|219852751|ref|YP_002467183.1| - 1.5e-52 178.6 1.6 2e-52 178.1 1.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HPD PF05044.7 gi|219852751|ref|YP_002467183.1| - 0.12 12.0 0.1 0.4 10.3 0.1 1.8 1 1 1 2 2 2 0 Homeo-prospero domain Ribosomal_L7Ae PF01248.21 gi|219852752|ref|YP_002467184.1| - 1.4e-16 59.7 0.0 1.8e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|219852753|ref|YP_002467185.1| - 8.8e-21 73.2 3.6 5.6e-15 54.6 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|219852753|ref|YP_002467185.1| - 3.9e-14 52.1 0.7 1.1e-13 50.7 0.1 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|219852753|ref|YP_002467185.1| - 3.6e-09 36.1 0.2 3.9e-05 23.2 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|219852753|ref|YP_002467185.1| - 2.2e-06 27.1 0.9 0.0046 16.5 0.1 2.4 2 0 0 2 2 2 2 KH domain Cas_Cas1 PF01867.11 gi|219852754|ref|YP_002467186.1| - 9.9e-44 149.5 0.0 1.1e-43 149.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Acylphosphatase PF00708.13 gi|219852755|ref|YP_002467187.1| - 3.3e-20 71.9 0.1 3.6e-20 71.8 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Apc3 PF12895.2 gi|219852756|ref|YP_002467188.1| - 0.018 15.2 0.8 1.4 9.0 0.3 3.3 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 NTP_transferase PF00483.18 gi|219852757|ref|YP_002467189.1| - 5.2e-47 160.2 0.0 6.6e-47 159.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|219852757|ref|YP_002467189.1| - 6e-18 63.4 11.2 5.4e-06 25.6 0.4 5.4 1 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|219852757|ref|YP_002467189.1| - 5.2e-10 39.6 0.0 7e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|219852757|ref|YP_002467189.1| - 9.3e-07 28.3 7.5 0.016 14.7 0.0 4.5 1 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase CBS PF00571.23 gi|219852758|ref|YP_002467190.1| - 1.7e-29 101.3 2.5 4e-14 52.1 0.3 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|219852758|ref|YP_002467190.1| - 2.9e-11 43.2 0.1 8.3e-11 41.8 0.0 1.8 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|219852758|ref|YP_002467190.1| - 0.097 12.4 0.0 0.58 9.9 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease HhH-GPD PF00730.20 gi|219852759|ref|YP_002467191.1| - 1.7e-10 41.1 0.0 2.7e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|219852759|ref|YP_002467191.1| - 6.8e-05 22.3 0.4 0.00018 20.9 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|219852759|ref|YP_002467191.1| - 7.1e-05 22.9 0.2 0.0051 16.9 0.0 3.1 2 1 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|219852759|ref|YP_002467191.1| - 0.03 14.2 0.0 0.89 9.5 0.0 2.4 2 0 0 2 2 2 0 Pathogenicity locus Transposase_20 PF02371.11 gi|219852759|ref|YP_002467191.1| - 0.083 13.0 0.1 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Abhydrolase_6 PF12697.2 gi|219852760|ref|YP_002467192.1| - 3.2e-41 141.6 0.0 3.7e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|219852760|ref|YP_002467192.1| - 1.2e-24 87.1 0.0 2.1e-24 86.3 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|219852760|ref|YP_002467192.1| - 1.7e-23 83.0 0.0 2.9e-15 56.2 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|219852760|ref|YP_002467192.1| - 3.4e-07 30.0 0.0 7e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|219852760|ref|YP_002467192.1| - 0.00066 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein DUF915 PF06028.6 gi|219852760|ref|YP_002467192.1| - 0.00083 18.5 0.0 0.0022 17.1 0.0 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_2 PF02230.11 gi|219852760|ref|YP_002467192.1| - 0.0067 15.9 0.0 2.7 7.3 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase UPF0227 PF05728.7 gi|219852760|ref|YP_002467192.1| - 0.02 14.6 0.0 0.66 9.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.16 gi|219852760|ref|YP_002467192.1| - 0.029 13.5 0.1 1.4 8.0 0.0 2.6 3 0 0 3 3 3 0 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|219852760|ref|YP_002467192.1| - 0.08 12.3 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Thioredox_DsbH PF03190.10 gi|219852761|ref|YP_002467193.1| - 4.9e-71 237.7 0.0 7.5e-71 237.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|219852761|ref|YP_002467193.1| - 4.3e-10 39.4 0.0 9.3e-10 38.4 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|219852761|ref|YP_002467193.1| - 8.8e-08 31.5 3.3 0.0002 20.5 0.3 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Prenyltrans_1 PF13243.1 gi|219852761|ref|YP_002467193.1| - 9e-05 22.4 1.5 0.013 15.5 0.2 3.2 3 0 0 3 3 3 1 Prenyltransferase-like Glyco_hydro_76 PF03663.9 gi|219852761|ref|YP_002467193.1| - 0.00054 19.4 0.2 0.14 11.4 0.0 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.8 gi|219852761|ref|YP_002467193.1| - 0.0035 16.6 0.5 0.85 8.8 0.0 2.8 3 0 0 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Thioredoxin_2 PF13098.1 gi|219852761|ref|YP_002467193.1| - 0.0067 16.6 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Prenyltrans_2 PF13249.1 gi|219852761|ref|YP_002467193.1| - 0.018 15.4 3.5 0.19 12.1 0.3 3.4 3 1 0 3 3 3 0 Prenyltransferase-like ABC2_membrane PF01061.19 gi|219852762|ref|YP_002467194.1| - 1.3e-25 89.8 27.9 1.3e-25 89.8 19.3 2.0 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219852762|ref|YP_002467194.1| - 0.00075 18.6 21.8 0.00075 18.6 15.1 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3185 PF11381.3 gi|219852762|ref|YP_002467194.1| - 0.017 14.8 0.2 0.051 13.3 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) ABC_tran PF00005.22 gi|219852763|ref|YP_002467195.1| - 4e-23 82.2 0.0 9.7e-23 80.9 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852763|ref|YP_002467195.1| - 9.5e-10 38.9 0.2 0.00022 21.2 0.3 2.3 1 1 0 2 2 2 2 AAA domain Wzt_C PF14524.1 gi|219852763|ref|YP_002467195.1| - 5.2e-06 26.2 0.0 1.1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_29 PF13555.1 gi|219852763|ref|YP_002467195.1| - 0.002 17.6 0.1 0.004 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|219852763|ref|YP_002467195.1| - 0.0052 17.1 0.3 0.022 15.0 0.2 2.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|219852763|ref|YP_002467195.1| - 0.0075 15.4 0.2 0.019 14.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|219852763|ref|YP_002467195.1| - 0.021 14.7 0.2 0.045 13.7 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|219852763|ref|YP_002467195.1| - 0.047 12.7 0.0 0.084 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|219852763|ref|YP_002467195.1| - 0.053 14.3 0.9 0.1 13.4 0.2 2.0 2 1 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.7 gi|219852764|ref|YP_002467196.1| - 1.7e-14 54.0 0.0 2.5e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852764|ref|YP_002467196.1| - 4.9e-09 36.1 0.0 6.9e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|219852764|ref|YP_002467196.1| - 6.5e-08 32.1 0.0 8.9e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.1 gi|219852764|ref|YP_002467196.1| - 9.7e-07 28.4 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852764|ref|YP_002467196.1| - 8.8e-06 26.0 0.0 1.2e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852764|ref|YP_002467196.1| - 0.0034 17.8 0.0 0.0049 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219852764|ref|YP_002467196.1| - 0.0046 17.5 0.0 0.0062 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|219852764|ref|YP_002467196.1| - 0.0059 16.1 0.0 0.0079 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|219852764|ref|YP_002467196.1| - 0.007 15.4 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|219852764|ref|YP_002467196.1| - 0.028 13.5 0.0 0.033 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|219852764|ref|YP_002467196.1| - 0.038 13.0 0.0 0.049 12.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|219852764|ref|YP_002467196.1| - 0.041 13.9 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|219852764|ref|YP_002467196.1| - 0.066 12.5 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain YfhO PF09586.5 gi|219852765|ref|YP_002467197.1| - 2.4e-23 82.1 71.0 3.5e-11 41.9 0.0 3.1 1 1 1 2 2 2 2 Bacterial membrane protein YfhO DDE_Tnp_1_2 PF13586.1 gi|219852767|ref|YP_002467199.1| - 1.1e-17 63.9 2.3 1.7e-17 63.3 1.6 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|219852767|ref|YP_002467199.1| - 5.8e-15 55.4 1.1 1e-14 54.5 0.8 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|219852767|ref|YP_002467199.1| - 0.00018 21.1 0.0 0.00023 20.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|219852767|ref|YP_002467199.1| - 0.017 14.8 0.0 0.12 12.1 0.0 1.9 1 1 0 1 1 1 0 Transposase DDE domain Methyltransf_11 PF08241.7 gi|219852768|ref|YP_002467200.1| - 3.2e-14 53.1 0.0 7e-13 48.8 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219852768|ref|YP_002467200.1| - 9.8e-11 41.6 0.0 1.5e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852768|ref|YP_002467200.1| - 4.2e-10 39.4 0.2 5.7e-09 35.7 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219852768|ref|YP_002467200.1| - 4.5e-09 36.6 0.0 2.4e-08 34.3 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852768|ref|YP_002467200.1| - 6.2e-07 29.7 0.1 0.00017 21.8 0.0 3.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|219852768|ref|YP_002467200.1| - 0.00023 20.8 0.1 0.00035 20.2 0.1 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.13 gi|219852768|ref|YP_002467200.1| - 0.00037 19.6 0.0 0.00061 18.9 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CheR PF01739.13 gi|219852768|ref|YP_002467200.1| - 0.0066 15.7 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain NNMT_PNMT_TEMT PF01234.12 gi|219852768|ref|YP_002467200.1| - 0.019 13.9 0.0 0.038 12.9 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family CMAS PF02353.15 gi|219852768|ref|YP_002467200.1| - 0.033 13.2 0.0 0.2 10.6 0.0 2.0 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase AntA PF08346.7 gi|219852768|ref|YP_002467200.1| - 0.036 14.2 0.1 0.076 13.2 0.1 1.5 1 0 0 1 1 1 0 AntA/AntB antirepressor Methyltransf_29 PF03141.11 gi|219852768|ref|YP_002467200.1| - 0.088 11.1 0.0 0.46 8.7 0.0 2.0 2 1 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|219852768|ref|YP_002467200.1| - 0.094 13.3 0.1 0.73 10.4 0.1 2.5 1 1 0 1 1 1 0 Methyltransferase domain Glyco_trans_1_4 PF13692.1 gi|219852769|ref|YP_002467201.1| - 2.4e-07 30.9 0.0 3.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|219852769|ref|YP_002467201.1| - 0.00024 20.5 0.0 0.0004 19.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|219852770|ref|YP_002467202.1| - 1.2e-26 93.1 0.0 1.7e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219852770|ref|YP_002467202.1| - 2.1e-12 47.3 0.0 3.3e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|219852770|ref|YP_002467202.1| - 4.6e-07 30.0 0.0 1.5e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219852770|ref|YP_002467202.1| - 2e-05 24.3 0.0 4.1e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|219852770|ref|YP_002467202.1| - 0.00015 21.9 0.0 0.00022 21.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Omptin PF01278.15 gi|219852770|ref|YP_002467202.1| - 0.14 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Omptin family Epimerase PF01370.16 gi|219852771|ref|YP_002467203.1| - 1.1e-55 188.6 0.0 1.4e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|219852771|ref|YP_002467203.1| - 5.5e-10 38.6 0.0 7.1e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|219852771|ref|YP_002467203.1| - 0.0094 15.2 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|219852771|ref|YP_002467203.1| - 0.032 13.1 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|219852771|ref|YP_002467203.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Glycos_transf_2 PF00535.21 gi|219852772|ref|YP_002467204.1| - 6e-16 58.5 0.0 1.3e-15 57.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852772|ref|YP_002467204.1| - 1.4e-06 28.2 0.0 8.8e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219852772|ref|YP_002467204.1| - 0.0033 17.6 0.0 0.0072 16.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Inhibitor_G39P PF11417.3 gi|219852772|ref|YP_002467204.1| - 0.079 12.9 0.0 0.36 10.8 0.0 2.1 2 0 0 2 2 2 0 Loader and inhibitor of phage G40P Glycos_transf_1 PF00534.15 gi|219852773|ref|YP_002467205.1| - 6.8e-06 25.6 0.0 1.3e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|219852773|ref|YP_002467205.1| - 5.1e-05 23.4 0.0 9.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|219852774|ref|YP_002467206.1| - 7.6e-16 58.2 1.2 8e-16 58.1 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852774|ref|YP_002467206.1| - 4.7e-12 46.2 0.0 9e-12 45.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|219852774|ref|YP_002467206.1| - 0.022 14.4 0.2 0.053 13.2 0.1 1.9 2 1 0 2 2 2 0 Glycosyl transferase family group 2 DegT_DnrJ_EryC1 PF01041.12 gi|219852775|ref|YP_002467207.1| - 1.1e-101 340.5 0.0 1.3e-101 340.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|219852775|ref|YP_002467207.1| - 9.7e-07 27.3 0.0 1.5e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|219852775|ref|YP_002467207.1| - 5.8e-05 21.9 0.0 0.0075 15.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219852775|ref|YP_002467207.1| - 0.022 13.9 0.0 0.034 13.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase CYTL1 PF15153.1 gi|219852775|ref|YP_002467207.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Cytokine-like protein 1 DHquinase_I PF01487.10 gi|219852775|ref|YP_002467207.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Type I 3-dehydroquinase TPP_enzyme_N PF02776.13 gi|219852776|ref|YP_002467208.1| - 5.4e-51 172.4 0.0 1.5e-49 167.7 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|219852776|ref|YP_002467208.1| - 6.5e-40 136.0 0.0 1.1e-39 135.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|219852776|ref|YP_002467208.1| - 6.5e-38 129.6 0.2 9.7e-37 125.8 0.0 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|219852776|ref|YP_002467208.1| - 0.00063 19.3 3.3 0.38 10.2 0.7 2.4 2 0 0 2 2 2 2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E1_dh PF00676.15 gi|219852776|ref|YP_002467208.1| - 0.25 10.0 0.9 0.66 8.6 0.0 2.1 2 1 0 2 2 2 0 Dehydrogenase E1 component Epimerase PF01370.16 gi|219852777|ref|YP_002467209.1| - 4.5e-45 153.9 0.0 5.5e-45 153.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|219852777|ref|YP_002467209.1| - 6.1e-13 48.1 0.0 1.2e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|219852777|ref|YP_002467209.1| - 9.6e-11 41.0 0.0 8.2e-10 38.0 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|219852777|ref|YP_002467209.1| - 2.5e-10 39.7 0.0 2.9e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|219852777|ref|YP_002467209.1| - 8.7e-08 32.3 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|219852777|ref|YP_002467209.1| - 1.1e-07 31.0 0.0 5.3e-07 28.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|219852777|ref|YP_002467209.1| - 1.5e-07 31.4 0.0 4.2e-07 30.0 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|219852777|ref|YP_002467209.1| - 1.1e-05 24.8 0.0 1.5e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|219852777|ref|YP_002467209.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 KR domain Epimerase_Csub PF13950.1 gi|219852777|ref|YP_002467209.1| - 0.015 15.2 0.5 0.037 13.9 0.3 1.7 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Epimerase PF01370.16 gi|219852778|ref|YP_002467210.1| - 1.1e-29 103.5 0.0 1.5e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|219852778|ref|YP_002467210.1| - 1.1e-10 40.8 0.0 2.7e-10 39.6 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|219852778|ref|YP_002467210.1| - 8.8e-10 37.7 0.0 1.1e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|219852778|ref|YP_002467210.1| - 1.4e-09 37.3 0.0 1.8e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|219852778|ref|YP_002467210.1| - 5.8e-06 25.4 0.2 1.2e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|219852778|ref|YP_002467210.1| - 1.2e-05 25.3 0.0 2.7e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|219852778|ref|YP_002467210.1| - 0.0088 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 KR domain E1-N PF14463.1 gi|219852778|ref|YP_002467210.1| - 0.031 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 E1 N-terminal domain NTP_transferase PF00483.18 gi|219852779|ref|YP_002467211.1| - 5.6e-20 71.6 0.0 8.2e-20 71.1 0.0 1.2 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|219852779|ref|YP_002467211.1| - 2.9e-08 33.9 0.0 4.1e-08 33.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|219852779|ref|YP_002467211.1| - 0.087 12.3 0.0 0.14 11.6 0.0 1.4 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_1 PF00534.15 gi|219852780|ref|YP_002467212.1| - 1.9e-13 50.1 0.0 8.5e-13 48.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|219852780|ref|YP_002467212.1| - 2.3e-09 37.2 0.0 9.2e-09 35.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|219852780|ref|YP_002467212.1| - 7.9e-08 32.4 0.0 6e-07 29.6 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|219852780|ref|YP_002467212.1| - 1.2e-07 32.0 0.0 4.8e-07 30.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|219852780|ref|YP_002467212.1| - 2e-07 31.2 0.0 6.6e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|219852780|ref|YP_002467212.1| - 0.0038 16.7 0.0 0.01 15.3 0.0 1.7 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|219852780|ref|YP_002467212.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_11 PF01531.11 gi|219852781|ref|YP_002467213.1| - 4e-36 124.5 0.5 7e-35 120.4 0.2 2.0 2 0 0 2 2 2 2 Glycosyl transferase family 11 Glycos_transf_2 PF00535.21 gi|219852782|ref|YP_002467214.1| - 4.7e-30 104.4 0.0 1.3e-29 103.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852782|ref|YP_002467214.1| - 8.4e-17 61.7 0.0 3.1e-16 59.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|219852782|ref|YP_002467214.1| - 2.8e-09 36.4 0.0 4.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|219852782|ref|YP_002467214.1| - 0.0048 16.6 0.1 0.021 14.5 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|219852782|ref|YP_002467214.1| - 0.012 15.9 0.0 0.045 14.0 0.0 2.0 2 1 0 2 2 2 0 Glycosyl transferase family 2 TP6A_N PF04406.9 gi|219852783|ref|YP_002467215.1| - 1.9e-19 69.0 0.1 3.9e-19 68.0 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|219852784|ref|YP_002467216.1| - 5.8e-65 217.7 0.0 1e-64 216.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|219852784|ref|YP_002467216.1| - 2.1e-13 49.9 0.0 8.7e-13 47.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|219852784|ref|YP_002467216.1| - 1.4e-09 37.6 0.0 2.6e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|219852784|ref|YP_002467216.1| - 0.0013 17.3 0.0 0.0027 16.3 0.0 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|219852784|ref|YP_002467216.1| - 0.013 15.2 0.0 0.044 13.4 0.0 1.8 2 0 0 2 2 2 0 GHKL domain tRNA-synt_His PF13393.1 gi|219852785|ref|YP_002467217.1| - 1.2e-62 211.7 0.1 1.9e-62 211.1 0.1 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|219852785|ref|YP_002467217.1| - 2.6e-22 79.2 0.0 4.4e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|219852785|ref|YP_002467217.1| - 1.8e-12 47.0 0.0 3.9e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|219852785|ref|YP_002467217.1| - 0.015 14.1 0.1 8.4 5.0 0.0 3.1 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|219852785|ref|YP_002467217.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) YwiC PF14256.1 gi|219852786|ref|YP_002467218.1| - 0.014 15.5 0.9 0.015 15.3 0.6 1.1 1 0 0 1 1 1 0 YwiC-like protein AIRC PF00731.15 gi|219852787|ref|YP_002467219.1| - 3.9e-19 68.4 3.6 3.9e-19 68.4 2.5 1.9 2 0 0 2 2 2 1 AIR carboxylase Peptidase_C37 PF05416.7 gi|219852787|ref|YP_002467219.1| - 0.096 10.9 0.1 0.14 10.4 0.1 1.1 1 0 0 1 1 1 0 Southampton virus-type processing peptidase CTP_transf_2 PF01467.21 gi|219852788|ref|YP_002467220.1| - 1.4e-17 64.1 0.0 1.7e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|219852788|ref|YP_002467220.1| - 0.018 14.6 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase SlyX PF04102.7 gi|219852789|ref|YP_002467221.1| - 4.5 7.7 6.4 20 5.6 0.2 3.2 3 0 0 3 3 3 0 SlyX CENP-F_leu_zip PF10473.4 gi|219852789|ref|YP_002467221.1| - 4.8 7.0 10.8 0.69 9.7 0.6 2.8 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Exosortase_EpsH PF09721.5 gi|219852790|ref|YP_002467222.1| - 0.02 14.1 3.3 0.023 13.9 2.3 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) PKD PF00801.15 gi|219852791|ref|YP_002467223.1| - 1.4e-78 258.5 58.5 2.4e-17 62.4 0.1 7.6 7 1 0 7 7 7 6 PKD domain NosD PF05048.8 gi|219852791|ref|YP_002467223.1| - 2.7e-40 138.0 2.7 4e-40 137.4 1.9 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|219852791|ref|YP_002467223.1| - 2.9e-12 46.6 11.1 4.5e-12 45.9 7.1 1.8 1 1 0 1 1 1 1 Right handed beta helix region Fe-S_assembly PF04384.8 gi|219852791|ref|YP_002467223.1| - 8.1e-07 29.3 0.0 7.6 6.9 0.0 4.4 4 0 0 4 4 4 3 Iron-sulphur cluster assembly DUF1565 PF07602.6 gi|219852791|ref|YP_002467223.1| - 0.00017 20.7 1.7 0.00042 19.5 0.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1565) TFIIS_C PF01096.13 gi|219852791|ref|YP_002467223.1| - 0.057 13.0 0.6 54 3.5 0.0 3.3 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) HATPase_c PF02518.21 gi|219852792|ref|YP_002467224.1| - 1.1e-21 76.5 0.1 3.1e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|219852792|ref|YP_002467224.1| - 0.0001 22.3 0.0 0.00021 21.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold DUF4118 PF13493.1 gi|219852792|ref|YP_002467224.1| - 0.019 15.1 12.0 0.029 14.5 8.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HATPase_c_2 PF13581.1 gi|219852792|ref|YP_002467224.1| - 0.046 13.5 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|219852792|ref|YP_002467224.1| - 0.058 13.7 0.0 0.22 11.8 0.0 2.1 2 0 0 2 2 2 0 PAS domain Histidinol_dh PF00815.15 gi|219852793|ref|YP_002467225.1| - 6.6e-157 522.3 0.5 7.5e-157 522.1 0.4 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase AcylCoA_dehyd_C PF12186.3 gi|219852793|ref|YP_002467225.1| - 0.12 12.2 0.6 3.3 7.5 0.0 2.3 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase C terminal DHHA1 PF02272.14 gi|219852794|ref|YP_002467226.1| - 2.1e-07 30.5 0.1 8.4e-07 28.6 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|219852794|ref|YP_002467226.1| - 0.018 14.6 0.0 0.052 13.2 0.0 1.7 1 1 0 1 1 1 0 DHH family DUF2012 PF09430.5 gi|219852794|ref|YP_002467226.1| - 0.17 11.7 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2012) AAA_2 PF07724.9 gi|219852795|ref|YP_002467227.1| - 2.4e-59 200.0 4.9 6.7e-57 192.1 0.2 3.4 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|219852795|ref|YP_002467227.1| - 1.4e-25 90.0 0.2 3.3e-13 49.9 0.0 3.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|219852795|ref|YP_002467227.1| - 1.2e-22 80.1 1.0 9.8e-15 54.4 0.0 3.7 3 2 1 4 4 3 2 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.4 gi|219852795|ref|YP_002467227.1| - 1.3e-22 79.4 0.8 8.3e-22 76.8 0.6 2.6 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein Clp_N PF02861.15 gi|219852795|ref|YP_002467227.1| - 1.7e-18 66.3 2.0 1.2e-09 37.9 0.4 2.8 2 0 0 2 2 2 2 Clp amino terminal domain AAA_16 PF13191.1 gi|219852795|ref|YP_002467227.1| - 1.6e-12 47.8 7.6 0.00015 21.8 0.0 5.5 4 2 2 6 6 6 2 AAA ATPase domain Sigma54_activat PF00158.21 gi|219852795|ref|YP_002467227.1| - 6.1e-12 45.3 0.3 7.4e-08 32.0 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|219852795|ref|YP_002467227.1| - 3e-11 43.5 2.8 0.00014 22.0 0.0 4.5 2 2 1 3 3 3 2 AAA domain IstB_IS21 PF01695.12 gi|219852795|ref|YP_002467227.1| - 3.4e-08 33.1 0.0 0.001 18.5 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|219852795|ref|YP_002467227.1| - 7.3e-08 31.8 0.1 0.015 14.4 0.0 3.5 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|219852795|ref|YP_002467227.1| - 1.5e-07 32.2 7.3 0.001 19.8 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|219852795|ref|YP_002467227.1| - 1.4e-06 28.6 11.9 0.0027 17.9 0.1 4.2 4 1 1 5 5 4 2 AAA domain Zeta_toxin PF06414.7 gi|219852795|ref|YP_002467227.1| - 1.7e-05 23.9 0.0 0.0023 17.0 0.0 3.0 2 1 0 2 2 2 1 Zeta toxin DNA_pol3_delta2 PF13177.1 gi|219852795|ref|YP_002467227.1| - 2.8e-05 23.8 0.0 0.0014 18.2 0.0 3.1 2 1 0 2 2 2 1 DNA polymerase III, delta subunit NACHT PF05729.7 gi|219852795|ref|YP_002467227.1| - 0.0001 21.9 0.0 0.21 11.2 0.0 3.6 3 1 0 3 3 3 1 NACHT domain AAA_3 PF07726.6 gi|219852795|ref|YP_002467227.1| - 0.00011 21.8 0.9 0.032 13.8 0.0 3.5 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|219852795|ref|YP_002467227.1| - 0.00012 21.6 3.1 0.017 14.5 0.3 2.9 2 1 0 2 2 2 1 AAA-like domain RNA_helicase PF00910.17 gi|219852795|ref|YP_002467227.1| - 0.00013 22.0 0.1 0.85 9.8 0.0 3.3 3 0 0 3 3 3 2 RNA helicase T2SE PF00437.15 gi|219852795|ref|YP_002467227.1| - 0.001 18.0 0.0 0.029 13.2 0.0 2.7 2 1 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|219852795|ref|YP_002467227.1| - 0.0014 18.3 17.2 0.0081 15.8 0.4 5.0 4 2 1 5 5 5 1 Archaeal ATPase AAA_19 PF13245.1 gi|219852795|ref|YP_002467227.1| - 0.0021 17.7 0.0 0.066 12.9 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|219852795|ref|YP_002467227.1| - 0.0031 16.7 0.0 1.3 8.1 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|219852795|ref|YP_002467227.1| - 0.0055 16.5 0.2 3.4 7.5 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|219852795|ref|YP_002467227.1| - 0.0056 16.2 0.0 0.67 9.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|219852795|ref|YP_002467227.1| - 0.0056 16.9 3.6 0.54 10.5 0.0 4.2 4 0 0 4 4 4 1 ABC transporter ResIII PF04851.10 gi|219852795|ref|YP_002467227.1| - 0.015 15.1 2.8 4.1 7.1 0.0 3.9 3 1 1 4 4 3 0 Type III restriction enzyme, res subunit AAA_28 PF13521.1 gi|219852795|ref|YP_002467227.1| - 0.015 15.2 5.4 0.53 10.2 0.1 3.7 4 1 1 5 5 4 0 AAA domain MobB PF03205.9 gi|219852795|ref|YP_002467227.1| - 0.024 14.3 0.0 0.87 9.2 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Torsin PF06309.6 gi|219852795|ref|YP_002467227.1| - 0.036 13.9 0.0 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 Torsin RGS PF00615.14 gi|219852795|ref|YP_002467227.1| - 0.041 13.9 1.1 0.084 12.9 0.0 2.1 2 0 0 2 2 1 0 Regulator of G protein signaling domain AAA_29 PF13555.1 gi|219852795|ref|YP_002467227.1| - 0.072 12.6 0.0 9.6 5.8 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|219852795|ref|YP_002467227.1| - 0.088 12.1 5.0 1.1 8.5 0.0 3.5 3 2 0 3 3 2 0 AAA domain DUF87 PF01935.12 gi|219852795|ref|YP_002467227.1| - 0.22 11.2 9.5 0.75 9.5 0.0 3.9 3 1 1 4 4 4 0 Domain of unknown function DUF87 Atg14 PF10186.4 gi|219852795|ref|YP_002467227.1| - 3.4 6.5 12.3 0.32 9.9 4.4 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 CBM_6 PF03422.10 gi|219852796|ref|YP_002467228.1| - 7.8e-14 51.9 2.0 7.8e-14 51.9 1.4 3.4 3 1 0 3 3 3 1 Carbohydrate binding module (family 6) PKD PF00801.15 gi|219852796|ref|YP_002467228.1| - 1.2e-05 24.9 1.1 1.2e-05 24.9 0.8 3.0 4 0 0 4 4 4 1 PKD domain EF-hand_1 PF00036.27 gi|219852796|ref|YP_002467228.1| - 0.15 11.4 5.3 2.9 7.4 0.0 3.7 3 0 0 3 3 3 0 EF hand Dockerin_1 PF00404.13 gi|219852796|ref|YP_002467228.1| - 0.83 9.4 4.6 16 5.3 0.2 2.9 2 0 0 2 2 2 0 Dockerin type I repeat RCC1_2 PF13540.1 gi|219852796|ref|YP_002467228.1| - 0.87 9.2 9.0 45 3.8 0.0 5.5 6 0 0 6 6 6 0 Regulator of chromosome condensation (RCC1) repeat DUF1729 PF08354.5 gi|219852796|ref|YP_002467228.1| - 1.1 9.0 12.5 18 5.2 0.1 5.1 6 0 0 6 6 6 0 Domain of unknown function (DUF1729) SBBP PF06739.6 gi|219852796|ref|YP_002467228.1| - 6.9 6.5 12.9 57 3.6 0.0 7.5 9 2 2 11 11 11 0 Beta-propeller repeat Peptidase_S41 PF03572.13 gi|219852797|ref|YP_002467229.1| - 1.1e-15 57.5 0.0 1.6e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.1 gi|219852797|ref|YP_002467229.1| - 9.6e-07 28.6 0.0 5.9e-06 26.0 0.0 2.3 1 1 0 1 1 1 1 PDZ domain Tricorn_C1 PF14684.1 gi|219852797|ref|YP_002467229.1| - 0.00017 21.3 0.1 0.00034 20.4 0.1 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain PDZ PF00595.19 gi|219852797|ref|YP_002467229.1| - 0.008 16.3 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Response_reg PF00072.19 gi|219852798|ref|YP_002467230.1| - 3.9e-24 84.8 0.4 4.3e-24 84.6 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219852799|ref|YP_002467231.1| - 6.6e-49 164.6 0.3 7.9e-19 67.9 0.0 5.1 6 0 0 6 6 5 4 PAS domain CHASE4 PF05228.8 gi|219852799|ref|YP_002467231.1| - 1.4e-33 115.7 0.0 3e-33 114.6 0.0 1.6 1 0 0 1 1 1 1 CHASE4 domain PAS_4 PF08448.5 gi|219852799|ref|YP_002467231.1| - 7.7e-33 112.8 0.0 8e-15 54.8 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS PF00989.19 gi|219852799|ref|YP_002467231.1| - 4.6e-31 106.9 0.1 1.4e-10 40.9 0.0 5.0 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|219852799|ref|YP_002467231.1| - 2.1e-20 71.7 0.4 5.2e-05 22.9 0.0 5.1 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|219852799|ref|YP_002467231.1| - 5.3e-20 71.3 0.0 2.2e-06 27.6 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|219852799|ref|YP_002467231.1| - 1.1e-08 34.7 0.0 2.4e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|219852799|ref|YP_002467231.1| - 1.9e-07 31.1 0.3 1.9e-07 31.1 0.2 2.4 2 0 0 2 2 1 1 HAMP domain PAS_11 PF14598.1 gi|219852799|ref|YP_002467231.1| - 1.2e-05 25.2 0.0 0.16 11.9 0.0 3.2 4 0 0 4 4 3 2 PAS domain PAS_7 PF12860.2 gi|219852799|ref|YP_002467231.1| - 0.00018 21.4 0.7 0.095 12.7 0.0 4.6 3 2 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|219852799|ref|YP_002467231.1| - 0.0062 16.7 0.0 0.46 10.7 0.0 3.4 3 0 0 3 3 3 1 PAS domain DUF4446 PF14584.1 gi|219852799|ref|YP_002467231.1| - 0.03 14.1 2.0 13 5.5 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4446) MDM31_MDM32 PF08118.6 gi|219852799|ref|YP_002467231.1| - 0.033 12.6 3.0 0.034 12.6 0.7 1.8 2 0 0 2 2 2 0 Yeast mitochondrial distribution and morphology (MDM) proteins TarH PF02203.10 gi|219852799|ref|YP_002467231.1| - 2.7 7.7 9.9 6.5 6.5 0.2 3.0 3 0 0 3 3 3 0 Tar ligand binding domain homologue PAS_3 PF08447.6 gi|219852800|ref|YP_002467232.1| - 2.6e-35 120.3 1.1 1.6e-15 56.9 0.0 4.8 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|219852800|ref|YP_002467232.1| - 1.6e-33 115.1 2.4 1e-07 32.2 0.0 4.6 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|219852800|ref|YP_002467232.1| - 1.3e-30 105.4 1.2 6.7e-10 38.7 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|219852800|ref|YP_002467232.1| - 1.3e-27 96.0 1.7 7.1e-14 51.7 0.1 4.5 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|219852800|ref|YP_002467232.1| - 2.4e-19 69.4 0.0 6.9e-19 67.9 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|219852800|ref|YP_002467232.1| - 1e-16 60.1 0.3 7.9e-05 22.3 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|219852800|ref|YP_002467232.1| - 9.5e-07 28.8 3.9 0.013 15.5 0.0 5.6 4 3 0 4 4 4 1 PAS fold PAS_11 PF14598.1 gi|219852800|ref|YP_002467232.1| - 2.1e-06 27.6 0.0 0.16 11.9 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|219852801|ref|YP_002467233.1| - 2.5e-26 91.5 0.0 4.8e-26 90.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|219852801|ref|YP_002467233.1| - 1.1e-12 47.9 0.9 9e-10 38.5 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|219852801|ref|YP_002467233.1| - 9.1e-10 38.4 0.1 2.8e-09 36.8 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|219852801|ref|YP_002467233.1| - 5.7e-09 35.9 1.8 8.9e-09 35.3 0.3 2.2 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|219852801|ref|YP_002467233.1| - 2.1e-08 34.4 0.1 1.8e-06 28.2 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|219852801|ref|YP_002467233.1| - 0.00015 21.3 0.0 0.00038 20.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS PF00989.19 gi|219852801|ref|YP_002467233.1| - 0.0066 16.2 0.7 0.062 13.0 0.0 2.7 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|219852801|ref|YP_002467233.1| - 0.016 14.9 0.1 0.11 12.2 0.0 2.3 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|219852801|ref|YP_002467233.1| - 0.12 12.3 0.0 0.36 10.7 0.0 1.9 1 0 0 1 1 1 0 PAS domain PAS_9 PF13426.1 gi|219852802|ref|YP_002467234.1| - 0.00021 21.5 0.0 0.0075 16.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|219852802|ref|YP_002467234.1| - 0.00094 19.1 0.3 0.0031 17.5 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|219852802|ref|YP_002467234.1| - 0.03 14.1 0.3 0.31 10.8 0.0 2.4 2 0 0 2 2 2 0 PAS fold Caudo_TAP PF02413.12 gi|219852802|ref|YP_002467234.1| - 0.064 13.4 0.1 0.091 12.9 0.1 1.2 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein GOLGA2L5 PF15070.1 gi|219852802|ref|YP_002467234.1| - 0.068 11.6 5.4 0.09 11.2 3.7 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 IATP PF04568.7 gi|219852802|ref|YP_002467234.1| - 2.8 8.0 7.7 5 7.2 5.3 1.3 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP PEMT PF04191.8 gi|219852803|ref|YP_002467235.1| - 3.7e-13 49.4 1.1 3.7e-13 49.4 0.8 2.1 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.9 gi|219852803|ref|YP_002467235.1| - 9.1e-08 32.2 0.0 2.1e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.7 gi|219852803|ref|YP_002467235.1| - 0.0003 20.1 0.4 0.00044 19.6 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.12 gi|219852803|ref|YP_002467235.1| - 0.00091 17.8 0.0 0.00091 17.8 0.0 1.5 2 0 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family NnrU PF07298.6 gi|219852803|ref|YP_002467235.1| - 0.003 16.9 0.6 0.0046 16.3 0.1 1.6 1 1 0 1 1 1 1 NnrU protein YwiC PF14256.1 gi|219852803|ref|YP_002467235.1| - 0.0064 16.5 9.2 0.0065 16.5 2.7 2.1 1 1 1 2 2 2 1 YwiC-like protein DUF4271 PF14093.1 gi|219852803|ref|YP_002467235.1| - 0.014 15.1 1.4 0.014 15.1 1.0 2.5 2 1 0 2 2 1 0 Domain of unknown function (DUF4271) DUF2834 PF11196.3 gi|219852803|ref|YP_002467235.1| - 0.092 12.9 0.3 0.092 12.9 0.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2834) MtrG PF04210.8 gi|219852803|ref|YP_002467235.1| - 1.7 8.3 3.8 18 5.0 0.0 2.6 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4191 PF13829.1 gi|219852803|ref|YP_002467235.1| - 1.9 7.5 6.5 1.9 7.5 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4191) Yip1 PF04893.12 gi|219852803|ref|YP_002467235.1| - 6.1 6.3 27.4 7 6.1 0.9 3.2 1 1 2 3 3 3 0 Yip1 domain ABC_tran PF00005.22 gi|219852804|ref|YP_002467236.1| - 2.2e-26 92.7 0.0 3.8e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852804|ref|YP_002467236.1| - 4.5e-14 53.1 0.6 1.6e-09 38.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|219852804|ref|YP_002467236.1| - 0.0017 18.8 0.1 0.0047 17.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|219852804|ref|YP_002467236.1| - 0.0023 18.2 1.6 0.0032 17.8 1.1 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|219852804|ref|YP_002467236.1| - 0.0027 17.1 0.0 0.023 14.1 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|219852804|ref|YP_002467236.1| - 0.0043 15.5 0.1 1.7 6.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|219852804|ref|YP_002467236.1| - 0.095 12.2 0.2 0.19 11.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|219852804|ref|YP_002467236.1| - 0.12 11.6 0.0 5.5 6.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219852804|ref|YP_002467236.1| - 0.16 10.9 0.1 1.7 7.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|219852804|ref|YP_002467236.1| - 0.18 11.5 0.9 1.4 8.6 0.2 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane PF01061.19 gi|219852805|ref|YP_002467237.1| - 7.4e-26 90.6 15.8 7.4e-26 90.6 11.0 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219852805|ref|YP_002467237.1| - 5.1e-10 38.9 24.9 1.1e-09 37.8 17.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219852805|ref|YP_002467237.1| - 0.0013 17.9 23.8 0.0021 17.2 16.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219852805|ref|YP_002467237.1| - 0.0026 16.6 18.3 0.03 13.1 12.7 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein 7TM_GPCR_Sru PF10322.4 gi|219852805|ref|YP_002467237.1| - 1 8.3 13.1 0.19 10.8 3.8 2.1 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Sru DUF2976 PF11190.3 gi|219852805|ref|YP_002467237.1| - 7.1 6.2 8.9 2.8 7.5 0.0 3.5 3 2 1 4 4 4 0 Protein of unknown function (DUF2976) HATPase_c PF02518.21 gi|219852806|ref|YP_002467238.1| - 6.5e-20 70.9 0.0 1.5e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|219852806|ref|YP_002467238.1| - 9.6e-07 28.9 0.8 9.6e-07 28.9 0.5 2.2 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.1 gi|219852806|ref|YP_002467238.1| - 0.00041 20.1 0.0 0.001 18.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|219852806|ref|YP_002467238.1| - 0.00049 20.0 0.6 0.005 16.8 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HSD3 PF15244.1 gi|219852806|ref|YP_002467238.1| - 0.05 12.8 0.1 0.075 12.2 0.1 1.1 1 0 0 1 1 1 0 Hydroxy-steroid dehydrogenase A2M_recep PF07677.9 gi|219852806|ref|YP_002467238.1| - 0.059 13.5 0.6 3.2 8.0 0.2 2.8 2 0 0 2 2 2 0 A-macroglobulin receptor Reo_sigmaC PF04582.7 gi|219852807|ref|YP_002467239.1| - 2.3e-06 27.0 1.7 2.7e-06 26.8 1.2 1.0 1 0 0 1 1 1 1 Reovirus sigma C capsid protein MCPsignal PF00015.16 gi|219852807|ref|YP_002467239.1| - 0.0022 17.5 1.0 0.0073 15.8 0.7 1.7 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|219852807|ref|YP_002467239.1| - 0.0043 16.8 0.3 0.005 16.6 0.2 1.1 1 0 0 1 1 1 1 Laminin Domain II AAA_27 PF13514.1 gi|219852807|ref|YP_002467239.1| - 0.0087 13.8 0.1 0.01 13.6 0.1 1.0 1 0 0 1 1 1 1 AAA domain ABC2_membrane_3 PF12698.2 gi|219852807|ref|YP_002467239.1| - 0.012 14.6 0.6 0.013 14.5 0.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein BLOC1_2 PF10046.4 gi|219852807|ref|YP_002467239.1| - 0.019 15.0 0.4 0.027 14.5 0.3 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4134 PF13572.1 gi|219852807|ref|YP_002467239.1| - 0.047 13.8 0.3 0.2 11.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4134) DivIC PF04977.10 gi|219852807|ref|YP_002467239.1| - 0.051 13.0 0.1 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 Septum formation initiator DUF948 PF06103.6 gi|219852807|ref|YP_002467239.1| - 0.069 13.0 3.4 0.37 10.6 2.3 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Sex_peptide PF08138.6 gi|219852807|ref|YP_002467239.1| - 0.076 12.8 0.4 0.81 9.5 0.1 2.1 2 0 0 2 2 2 0 Sex peptide (SP) family NPV_P10 PF05531.7 gi|219852807|ref|YP_002467239.1| - 0.13 12.5 4.0 0.29 11.4 0.7 2.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4179 PF13786.1 gi|219852807|ref|YP_002467239.1| - 0.19 11.9 0.7 0.25 11.6 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) Ribonucleas_3_3 PF14622.1 gi|219852808|ref|YP_002467240.1| - 3.7e-15 56.0 0.0 4.5e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|219852808|ref|YP_002467240.1| - 2.7e-09 37.4 0.0 5.8e-09 36.3 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease III domain Lipase_GDSL_2 PF13472.1 gi|219852809|ref|YP_002467241.1| - 1.7e-16 60.8 0.7 3.9e-16 59.7 0.5 1.7 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219852809|ref|YP_002467241.1| - 1.3e-14 54.5 0.8 1.3e-14 54.5 0.6 1.5 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase DUF2589 PF11655.3 gi|219852809|ref|YP_002467241.1| - 0.0012 18.9 0.2 0.0018 18.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2589) GTP_EFTU_D2 PF03144.20 gi|219852810|ref|YP_002467242.1| - 1.1e-11 44.6 0.7 1e-10 41.5 0.9 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|219852810|ref|YP_002467242.1| - 2.2e-06 27.2 0.2 4.5e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SNO PF01174.14 gi|219852811|ref|YP_002467243.1| - 3.1e-49 167.1 0.0 3.8e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|219852811|ref|YP_002467243.1| - 0.00013 21.6 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SOR_SNZ PF01680.12 gi|219852812|ref|YP_002467244.1| - 4.5e-105 349.8 6.4 4.5e-105 349.8 4.4 1.5 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.9 gi|219852812|ref|YP_002467244.1| - 6.4e-09 35.2 3.6 8.8e-07 28.2 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|219852812|ref|YP_002467244.1| - 0.0018 17.1 0.2 0.2 10.4 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|219852812|ref|YP_002467244.1| - 0.004 16.3 2.7 0.0046 16.1 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|219852812|ref|YP_002467244.1| - 0.016 14.3 0.0 0.21 10.6 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Ifi-6-16 PF06140.8 gi|219852812|ref|YP_002467244.1| - 0.21 11.4 2.6 0.15 11.9 0.2 1.9 2 0 0 2 2 2 0 Interferon-induced 6-16 family CobD_Cbib PF03186.8 gi|219852813|ref|YP_002467245.1| - 3.7e-87 292.1 0.4 4.5e-87 291.8 0.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF3815 PF12821.2 gi|219852814|ref|YP_002467246.1| - 0.075 12.9 0.2 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3815) Trm112p PF03966.11 gi|219852815|ref|YP_002467247.1| - 1.5e-09 38.0 0.8 2.7e-09 37.2 0.6 1.4 1 1 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|219852815|ref|YP_002467247.1| - 0.002 17.4 0.2 0.003 16.8 0.1 1.4 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|219852815|ref|YP_002467247.1| - 0.0072 16.6 0.7 0.0085 16.3 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|219852815|ref|YP_002467247.1| - 0.0078 15.6 0.1 0.0099 15.3 0.1 1.2 1 0 0 1 1 1 1 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.7 gi|219852815|ref|YP_002467247.1| - 0.086 12.9 1.9 0.25 11.4 1.3 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-UDP PF14569.1 gi|219852815|ref|YP_002467247.1| - 0.13 12.0 0.2 0.35 10.6 0.1 1.7 1 1 0 1 1 1 0 Zinc-binding RING-finger Auto_anti-p27 PF06677.7 gi|219852815|ref|YP_002467247.1| - 0.14 11.9 1.8 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RRN7 PF11781.3 gi|219852815|ref|YP_002467247.1| - 1.2 8.6 4.0 9.5 5.8 0.2 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Adenylsucc_synt PF00709.16 gi|219852816|ref|YP_002467248.1| - 4.6e-82 275.9 4.3 1e-39 136.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase GXGXG PF01493.14 gi|219852817|ref|YP_002467249.1| - 3.5e-36 124.1 19.5 6e-36 123.3 13.5 1.4 1 0 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|219852818|ref|YP_002467250.1| - 1.6e-54 185.6 0.2 2e-54 185.3 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|219852818|ref|YP_002467250.1| - 3.6e-10 39.5 0.7 1.2e-09 37.8 0.0 2.3 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|219852818|ref|YP_002467250.1| - 0.0013 18.8 0.0 0.66 9.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|219852818|ref|YP_002467250.1| - 0.0088 15.7 0.1 0.066 12.8 0.0 2.5 2 1 0 2 2 2 1 Amidohydrolase family Urease_alpha PF00449.15 gi|219852818|ref|YP_002467250.1| - 0.035 14.2 0.6 0.1 12.7 0.2 2.0 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Molybdopterin PF00384.17 gi|219852819|ref|YP_002467251.1| - 5.2e-14 51.8 0.1 3.4e-13 49.1 0.1 2.1 1 1 1 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|219852820|ref|YP_002467252.1| - 8.2e-16 57.7 0.0 1e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molydop_binding PF01568.16 gi|219852821|ref|YP_002467253.1| - 3.2e-16 59.1 0.0 3.8e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.11 gi|219852822|ref|YP_002467254.1| - 1.5e-50 169.9 0.0 1.7e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|219852823|ref|YP_002467255.1| - 9.4e-16 56.6 43.3 3.3e-05 23.2 2.3 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219852823|ref|YP_002467255.1| - 9.7e-15 54.6 31.0 3.6e-08 33.6 7.3 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852823|ref|YP_002467255.1| - 1e-13 50.9 28.6 6e-08 32.4 6.2 4.0 4 0 0 4 4 3 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|219852823|ref|YP_002467255.1| - 1.4e-13 51.1 0.0 8.1e-12 45.4 0.0 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|219852823|ref|YP_002467255.1| - 1.9e-13 50.4 26.1 8.7e-07 29.1 6.7 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852823|ref|YP_002467255.1| - 9.3e-13 48.0 20.9 3e-08 33.5 2.8 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852823|ref|YP_002467255.1| - 1.5e-11 44.8 14.4 0.041 14.6 0.3 4.7 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|219852823|ref|YP_002467255.1| - 7.6e-11 41.6 33.8 2.1e-05 24.2 8.1 4.2 3 2 2 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852823|ref|YP_002467255.1| - 9.1e-10 37.9 35.9 0.00077 19.2 1.3 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219852823|ref|YP_002467255.1| - 3.1e-08 33.9 28.3 0.0049 17.2 1.1 5.4 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852823|ref|YP_002467255.1| - 3.8e-08 32.7 44.2 0.0015 18.3 1.8 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852823|ref|YP_002467255.1| - 8.7e-08 32.3 26.8 9.8e-07 29.0 2.5 4.2 3 1 1 4 4 4 1 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|219852823|ref|YP_002467255.1| - 1.1e-06 28.0 0.3 2.4e-06 26.9 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|219852823|ref|YP_002467255.1| - 1.2e-06 27.6 0.7 2e-06 26.9 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|219852823|ref|YP_002467255.1| - 1.2e-05 25.2 0.0 1.2e-05 25.2 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|219852823|ref|YP_002467255.1| - 1.8e-05 23.8 0.3 1.8e-05 23.8 0.2 2.8 3 0 0 3 3 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|219852823|ref|YP_002467255.1| - 2e-05 23.6 0.1 3.3e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_13 PF13370.1 gi|219852823|ref|YP_002467255.1| - 5.7e-05 23.4 24.6 0.46 10.9 0.1 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain Pyr_redox_3 PF13738.1 gi|219852823|ref|YP_002467255.1| - 0.00028 21.0 0.0 0.00063 19.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|219852823|ref|YP_002467255.1| - 0.00039 19.5 0.0 0.00072 18.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|219852823|ref|YP_002467255.1| - 0.00089 18.4 1.1 0.002 17.2 0.5 1.7 1 1 1 2 2 2 1 FAD binding domain Fer4_4 PF12800.2 gi|219852823|ref|YP_002467255.1| - 0.0011 19.1 45.2 0.0053 16.9 1.0 6.1 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219852823|ref|YP_002467255.1| - 0.0014 19.1 26.4 0.58 10.7 0.2 4.8 3 1 1 4 4 4 3 4Fe-4S single cluster domain Pyr_redox PF00070.22 gi|219852823|ref|YP_002467255.1| - 0.0025 18.1 0.4 0.0025 18.1 0.2 2.9 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|219852823|ref|YP_002467255.1| - 0.0061 15.0 1.9 0.0061 15.0 1.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.19 gi|219852823|ref|YP_002467255.1| - 0.018 14.1 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|219852823|ref|YP_002467255.1| - 0.12 11.2 0.1 0.4 9.5 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein CCG PF02754.11 gi|219852824|ref|YP_002467256.1| - 6.4e-31 106.2 1.0 1.8e-17 63.0 0.2 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|219852825|ref|YP_002467257.1| - 3.2e-12 46.2 6.3 5.1e-12 45.6 4.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852825|ref|YP_002467257.1| - 1.2e-08 35.1 4.3 2.6e-08 34.0 2.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852825|ref|YP_002467257.1| - 1e-07 32.1 7.8 1.4e-05 25.2 6.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219852825|ref|YP_002467257.1| - 2.5e-06 27.1 6.9 5.2e-06 26.1 4.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852825|ref|YP_002467257.1| - 1.9e-05 24.9 9.3 0.018 15.4 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852825|ref|YP_002467257.1| - 4.5e-05 23.4 10.3 0.027 14.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219852825|ref|YP_002467257.1| - 0.00019 21.1 11.2 0.043 13.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219852825|ref|YP_002467257.1| - 0.00027 21.6 4.3 0.32 11.7 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|219852825|ref|YP_002467257.1| - 0.00028 21.2 10.4 0.0024 18.2 7.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|219852825|ref|YP_002467257.1| - 0.0076 15.8 11.5 0.19 11.3 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852825|ref|YP_002467257.1| - 0.015 15.1 7.6 0.044 13.6 5.2 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852825|ref|YP_002467257.1| - 1.5 9.5 14.2 0.44 11.2 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|219852826|ref|YP_002467258.1| - 3.6e-40 133.9 94.0 9.9e-08 31.2 3.2 8.4 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219852826|ref|YP_002467258.1| - 7.3e-33 112.7 73.3 1.8e-09 37.8 8.9 5.1 3 2 1 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219852826|ref|YP_002467258.1| - 5.1e-26 90.2 69.5 5e-06 26.2 7.7 6.4 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852826|ref|YP_002467258.1| - 2.1e-25 89.2 64.0 3.9e-06 27.5 7.8 6.7 5 2 2 7 7 7 7 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219852826|ref|YP_002467258.1| - 1.3e-24 86.1 74.3 5.8e-06 26.4 0.3 6.4 4 3 3 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852826|ref|YP_002467258.1| - 4.6e-23 80.8 70.6 6.6e-05 22.6 7.3 7.4 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852826|ref|YP_002467258.1| - 1.7e-21 75.0 87.2 3.3e-06 26.7 2.8 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852826|ref|YP_002467258.1| - 4.4e-16 58.6 69.2 0.00016 21.6 6.4 5.7 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852826|ref|YP_002467258.1| - 3.3e-15 54.9 89.4 2.5e-05 23.9 2.4 8.2 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852826|ref|YP_002467258.1| - 1.5e-13 50.8 63.6 0.00062 20.0 4.4 6.1 4 2 1 5 5 5 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852826|ref|YP_002467258.1| - 6.8e-10 39.3 65.0 0.00073 20.0 0.2 8.0 6 1 1 7 7 7 4 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219852826|ref|YP_002467258.1| - 2.2e-06 28.0 77.9 0.0055 17.0 0.3 8.2 4 1 4 8 8 8 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852826|ref|YP_002467258.1| - 4.1e-06 26.6 20.6 0.00071 19.7 0.5 8.3 8 0 0 8 8 7 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|219852826|ref|YP_002467258.1| - 2.3e-05 24.1 49.2 0.033 14.0 2.6 5.7 2 2 1 4 4 4 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219852826|ref|YP_002467258.1| - 0.0013 19.1 104.5 0.01 16.3 4.6 8.5 8 1 0 8 8 8 4 4Fe-4S binding domain PRP21_like_P PF12230.3 gi|219852826|ref|YP_002467258.1| - 0.0049 16.4 2.1 0.083 12.3 0.0 2.7 3 0 0 3 3 3 1 Pre-mRNA splicing factor PRP21 like protein Bactofilin PF04519.8 gi|219852826|ref|YP_002467258.1| - 0.0085 16.0 0.5 0.73 9.8 0.1 2.6 2 0 0 2 2 2 1 Polymer-forming cytoskeletal Fer4_13 PF13370.1 gi|219852826|ref|YP_002467258.1| - 0.017 15.5 3.1 0.017 15.5 2.2 8.5 8 1 1 9 9 8 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|219852827|ref|YP_002467259.1| - 1.9e-16 58.8 14.9 1.1e-08 34.2 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219852827|ref|YP_002467259.1| - 2e-13 50.4 7.6 3.5e-13 49.6 5.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852827|ref|YP_002467259.1| - 1.4e-12 46.6 12.6 9.3e-07 28.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219852827|ref|YP_002467259.1| - 6.8e-12 45.9 17.0 4.9e-09 36.7 6.0 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|219852827|ref|YP_002467259.1| - 1.8e-11 44.0 7.6 2.8e-11 43.5 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219852827|ref|YP_002467259.1| - 5.8e-11 41.7 14.4 2.2e-05 24.1 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852827|ref|YP_002467259.1| - 6.1e-11 41.9 7.5 1.3e-10 40.8 5.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852827|ref|YP_002467259.1| - 2e-09 37.1 13.1 1.4e-08 34.4 9.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852827|ref|YP_002467259.1| - 7.8e-09 35.4 7.7 1.6e-08 34.4 5.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852827|ref|YP_002467259.1| - 4.5e-08 32.8 11.6 0.00089 19.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|219852827|ref|YP_002467259.1| - 9.6e-08 32.2 7.0 2.2e-07 31.1 4.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852827|ref|YP_002467259.1| - 1.7e-07 31.5 9.6 0.0019 18.5 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|219852827|ref|YP_002467259.1| - 1.1e-06 29.0 7.4 0.0047 17.4 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219852827|ref|YP_002467259.1| - 7e-06 26.2 25.0 0.01 16.3 6.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|219852827|ref|YP_002467259.1| - 0.00031 20.5 3.2 0.0093 15.8 2.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219852827|ref|YP_002467259.1| - 0.0093 16.3 13.1 0.2 12.0 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain DUF3954 PF13128.1 gi|219852827|ref|YP_002467259.1| - 0.054 12.9 0.4 0.079 12.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3954) Fer4_19 PF06902.6 gi|219852827|ref|YP_002467259.1| - 0.5 10.2 12.4 0.28 11.0 0.6 3.0 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster FTR_C PF02741.10 gi|219852828|ref|YP_002467260.1| - 1.6e-67 225.9 3.2 2.4e-67 225.4 2.3 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|219852828|ref|YP_002467260.1| - 1.1e-58 197.0 0.0 1.9e-58 196.3 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Rubredoxin PF00301.15 gi|219852829|ref|YP_002467261.1| - 1.6e-19 69.4 2.0 1.8e-19 69.3 1.4 1.1 1 0 0 1 1 1 1 Rubredoxin DUF2296 PF10058.4 gi|219852829|ref|YP_002467261.1| - 0.018 14.8 1.9 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Tnp_zf-ribbon_2 PF13842.1 gi|219852829|ref|YP_002467261.1| - 0.019 15.3 0.0 0.036 14.4 0.0 1.5 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Nudix_N_2 PF14803.1 gi|219852829|ref|YP_002467261.1| - 0.045 13.4 2.1 0.87 9.3 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal PHD PF00628.24 gi|219852829|ref|YP_002467261.1| - 0.098 12.3 0.7 1.5 8.6 0.0 2.0 2 0 0 2 2 2 0 PHD-finger DNA_RNApol_7kD PF03604.8 gi|219852829|ref|YP_002467261.1| - 0.12 11.8 3.4 3.2 7.3 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|219852829|ref|YP_002467261.1| - 0.13 11.4 0.5 1.4 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|219852829|ref|YP_002467261.1| - 0.2 11.6 1.8 3.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|219852829|ref|YP_002467261.1| - 0.22 11.0 1.6 4 7.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|219852829|ref|YP_002467261.1| - 0.36 10.8 3.1 0.57 10.2 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.11 gi|219852829|ref|YP_002467261.1| - 0.75 9.4 3.9 6.4 6.5 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|219852830|ref|YP_002467262.1| - 0.014 14.6 0.3 0.014 14.6 0.2 1.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|219852830|ref|YP_002467262.1| - 0.018 14.2 0.2 0.031 13.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1922 PF09082.5 gi|219852830|ref|YP_002467262.1| - 0.058 13.4 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) NOB1_Zn_bind PF08772.6 gi|219852830|ref|YP_002467262.1| - 0.063 13.1 0.1 0.091 12.5 0.1 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Kinase-like PF14531.1 gi|219852830|ref|YP_002467262.1| - 0.083 11.8 0.0 0.092 11.6 0.0 1.0 1 0 0 1 1 1 0 Kinase-like Ribosomal_S27e PF01667.12 gi|219852830|ref|YP_002467262.1| - 0.16 11.5 0.4 0.23 10.9 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 Response_reg PF00072.19 gi|219852831|ref|YP_002467263.1| - 1.7e-28 98.8 0.3 1.8e-28 98.7 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheX PF13690.1 gi|219852832|ref|YP_002467264.1| - 1.5e-09 37.5 0.1 1.7e-05 24.5 0.0 2.5 2 1 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.7 gi|219852832|ref|YP_002467264.1| - 8e-07 28.6 2.3 6.5e-06 25.7 0.0 2.6 2 1 0 2 2 2 1 CheC-like family HATPase_c PF02518.21 gi|219852833|ref|YP_002467265.1| - 3.9e-23 81.2 0.1 9.5e-23 80.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|219852833|ref|YP_002467265.1| - 2.8e-12 47.3 0.2 4.8e-12 46.5 0.1 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|219852833|ref|YP_002467265.1| - 1.8e-10 41.0 0.1 3.5e-10 40.0 0.1 1.5 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|219852833|ref|YP_002467265.1| - 9.7e-09 35.2 0.0 3.3e-08 33.5 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|219852833|ref|YP_002467265.1| - 6e-08 33.0 0.0 2.5e-07 31.0 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|219852833|ref|YP_002467265.1| - 3.3e-06 26.8 0.0 7e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|219852833|ref|YP_002467265.1| - 0.0001 22.2 0.4 0.00058 19.8 0.1 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|219852833|ref|YP_002467265.1| - 0.00013 21.7 0.0 0.00042 20.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219852833|ref|YP_002467265.1| - 0.00051 19.8 0.0 0.0017 18.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|219852833|ref|YP_002467265.1| - 0.00096 19.3 0.1 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|219852833|ref|YP_002467265.1| - 0.018 14.7 0.0 0.044 13.5 0.0 1.6 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.1 gi|219852833|ref|YP_002467265.1| - 0.024 14.2 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|219852833|ref|YP_002467265.1| - 0.044 14.0 0.2 2.1 8.6 0.0 2.9 3 0 0 3 3 3 0 PAS domain Fe-ADH PF00465.14 gi|219852834|ref|YP_002467266.1| - 1e-107 359.9 0.8 1.2e-107 359.8 0.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|219852834|ref|YP_002467266.1| - 4.7e-19 68.6 2.1 3.9e-10 39.4 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PAS PF00989.19 gi|219852835|ref|YP_002467267.1| - 6.1e-27 93.6 0.0 2.7e-12 46.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|219852835|ref|YP_002467267.1| - 2.3e-22 79.3 0.0 8.1e-11 42.2 0.0 2.8 2 1 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|219852835|ref|YP_002467267.1| - 1e-13 50.5 0.1 4.7e-06 26.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219852835|ref|YP_002467267.1| - 3.6e-08 33.4 0.1 0.009 16.0 0.0 3.0 2 1 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|219852835|ref|YP_002467267.1| - 0.0016 18.4 0.3 0.0016 18.4 0.2 3.1 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain RNase_H_2 PF13482.1 gi|219852836|ref|YP_002467268.1| - 3.2e-33 114.8 0.0 4.9e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_lambd_f PF10391.4 gi|219852836|ref|YP_002467268.1| - 4.6e-05 22.8 0.0 0.0001 21.7 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DNA_pol_B_exo1 PF03104.14 gi|219852836|ref|YP_002467268.1| - 0.00022 20.2 0.0 0.00043 19.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain HHH_5 PF14520.1 gi|219852836|ref|YP_002467268.1| - 0.00022 21.3 0.0 0.00076 19.6 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.4 gi|219852836|ref|YP_002467268.1| - 0.00027 20.5 0.0 0.00054 19.5 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH PF00633.18 gi|219852836|ref|YP_002467268.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DEAD PF00270.24 gi|219852837|ref|YP_002467269.1| - 1e-22 80.4 0.0 3.9e-22 78.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|219852837|ref|YP_002467269.1| - 1.5e-16 60.7 0.7 5.3e-16 58.9 0.5 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|219852837|ref|YP_002467269.1| - 2.3e-10 40.1 0.0 1.4e-09 37.6 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|219852837|ref|YP_002467269.1| - 0.083 12.7 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit PolC_DP2 PF03833.8 gi|219852838|ref|YP_002467270.1| - 0 1153.9 0.1 0 1152.3 0.0 1.9 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 PT-HINT PF07591.6 gi|219852838|ref|YP_002467270.1| - 0.083 12.7 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain OrfB_Zn_ribbon PF07282.6 gi|219852838|ref|YP_002467270.1| - 1.5 8.5 14.2 1.9 8.2 4.3 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF3389 PF11869.3 gi|219852839|ref|YP_002467271.1| - 0.11 12.3 0.2 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3389) HATPase_c PF02518.21 gi|219852840|ref|YP_002467272.1| - 1.3e-11 44.2 0.2 2.9e-11 43.0 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|219852840|ref|YP_002467272.1| - 3.9e-07 29.7 0.0 1.2e-06 28.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219852840|ref|YP_002467272.1| - 1.1e-06 28.3 0.0 3.7e-06 26.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|219852840|ref|YP_002467272.1| - 2e-05 24.5 0.1 5.7e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|219852840|ref|YP_002467272.1| - 9.6e-05 22.3 0.1 0.00021 21.2 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|219852840|ref|YP_002467272.1| - 0.0004 19.8 0.0 0.00086 18.8 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_9 PF13426.1 gi|219852840|ref|YP_002467272.1| - 0.00052 20.3 0.0 0.002 18.4 0.0 2.0 1 1 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|219852840|ref|YP_002467272.1| - 0.011 15.4 0.0 0.034 13.9 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain YobH PF13996.1 gi|219852840|ref|YP_002467272.1| - 0.033 14.1 0.4 0.15 11.9 0.3 2.2 1 0 0 1 1 1 0 YobH-like protein HATPase_c PF02518.21 gi|219852841|ref|YP_002467273.1| - 4.9e-12 45.5 0.1 1.2e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|219852841|ref|YP_002467273.1| - 9.9e-08 31.7 0.0 2.3e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219852841|ref|YP_002467273.1| - 2e-07 30.6 0.0 6.1e-07 29.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|219852841|ref|YP_002467273.1| - 1.9e-05 24.6 0.1 0.00015 21.7 0.0 2.3 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|219852841|ref|YP_002467273.1| - 0.00011 22.0 0.4 0.00031 20.6 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|219852841|ref|YP_002467273.1| - 0.00078 19.7 0.0 0.024 15.0 0.0 2.7 2 1 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|219852841|ref|YP_002467273.1| - 0.0021 17.8 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain YqjK PF13997.1 gi|219852841|ref|YP_002467273.1| - 0.0046 17.1 0.2 0.021 15.0 0.0 2.2 2 0 0 2 2 2 1 YqjK-like protein SPOB_a PF14689.1 gi|219852841|ref|YP_002467273.1| - 0.0051 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.1 gi|219852841|ref|YP_002467273.1| - 0.027 14.7 0.0 0.065 13.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|219852841|ref|YP_002467273.1| - 0.2 11.3 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTP_transf_1 PF01148.15 gi|219852842|ref|YP_002467274.1| - 2.6e-06 27.3 14.4 8.5e-06 25.6 10.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family PAP2 PF01569.16 gi|219852843|ref|YP_002467275.1| - 1.9e-14 53.4 4.4 1.9e-14 53.4 3.0 2.6 2 1 0 2 2 2 1 PAP2 superfamily Neurensin PF14927.1 gi|219852843|ref|YP_002467275.1| - 6.2 6.2 8.4 1.3 8.3 2.4 2.1 2 0 0 2 2 2 0 Neurensin V4R PF02830.13 gi|219852844|ref|YP_002467276.1| - 3.8e-18 65.0 0.5 6.4e-18 64.3 0.3 1.3 1 0 0 1 1 1 1 V4R domain HTH_20 PF12840.2 gi|219852844|ref|YP_002467276.1| - 4.3e-07 29.6 0.1 2e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|219852844|ref|YP_002467276.1| - 1.1e-06 28.2 0.2 2.7e-06 26.9 0.1 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|219852844|ref|YP_002467276.1| - 3.9e-06 26.4 0.1 6.5e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|219852844|ref|YP_002467276.1| - 0.00016 21.2 0.5 0.00037 20.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|219852844|ref|YP_002467276.1| - 0.0016 18.6 0.1 0.0035 17.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|219852844|ref|YP_002467276.1| - 0.0025 17.3 0.0 0.0057 16.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|219852844|ref|YP_002467276.1| - 0.0067 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|219852844|ref|YP_002467276.1| - 0.019 14.5 0.0 0.04 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|219852844|ref|YP_002467276.1| - 0.041 13.2 0.0 0.068 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RP-C PF03428.8 gi|219852844|ref|YP_002467276.1| - 0.13 11.7 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Lactamase_B PF00753.22 gi|219852845|ref|YP_002467277.1| - 7e-27 94.3 0.1 1.1e-26 93.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|219852845|ref|YP_002467277.1| - 5.8e-13 49.0 0.0 1.3e-12 47.9 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|219852845|ref|YP_002467277.1| - 5.2e-05 22.8 0.0 0.00018 21.1 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.10 gi|219852845|ref|YP_002467277.1| - 0.0028 17.1 0.0 0.0053 16.2 0.0 1.5 1 0 0 1 1 1 1 NADPH-dependent FMN reductase PGM_PMM_I PF02878.11 gi|219852845|ref|YP_002467277.1| - 0.017 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PAS_4 PF08448.5 gi|219852846|ref|YP_002467278.1| - 3.5e-31 107.5 9.1 3.9e-11 42.9 0.1 5.6 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.1 gi|219852846|ref|YP_002467278.1| - 4.1e-30 104.2 0.1 1e-08 35.4 0.0 5.2 4 1 0 4 4 4 4 PAS domain PAS_8 PF13188.1 gi|219852846|ref|YP_002467278.1| - 6.4e-26 89.2 0.2 2.9e-08 33.2 0.0 4.9 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|219852846|ref|YP_002467278.1| - 7.1e-21 74.3 0.0 2e-20 72.8 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|219852846|ref|YP_002467278.1| - 2.1e-19 69.3 2.7 1.2e-06 28.2 0.0 5.7 6 0 0 6 6 6 4 PAS fold GAF_2 PF13185.1 gi|219852846|ref|YP_002467278.1| - 7.8e-14 52.4 2.7 9.8e-13 48.8 0.2 3.4 3 0 0 3 3 3 1 GAF domain GAF PF01590.21 gi|219852846|ref|YP_002467278.1| - 2.1e-09 37.7 1.0 2.3e-08 34.3 0.0 2.8 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|219852846|ref|YP_002467278.1| - 6.3e-08 32.7 0.0 4.3e-07 30.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|219852846|ref|YP_002467278.1| - 0.0008 19.4 11.2 0.2 11.6 0.0 6.2 5 2 0 6 6 6 2 PAS fold HisKA PF00512.20 gi|219852846|ref|YP_002467278.1| - 0.0082 16.1 0.6 0.072 13.1 0.1 3.0 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|219852846|ref|YP_002467278.1| - 0.04 14.2 0.0 4.5 7.5 0.0 3.5 3 0 0 3 3 3 0 PAS domain DUF2288 PF10052.4 gi|219852846|ref|YP_002467278.1| - 0.17 11.6 1.2 23 4.7 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2288) Response_reg PF00072.19 gi|219852848|ref|YP_002467280.1| - 4.2e-18 65.3 0.1 4.9e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.14 gi|219852849|ref|YP_002467281.1| - 0.00011 21.7 0.2 0.00012 21.6 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.14 gi|219852850|ref|YP_002467282.1| - 1.9e-13 50.0 0.0 2.5e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|219852851|ref|YP_002467283.1| - 4.5e-49 166.8 55.3 1.4e-47 162.0 19.4 5.0 3 3 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219852851|ref|YP_002467283.1| - 2e-27 95.3 0.0 2.3e-12 46.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|219852851|ref|YP_002467283.1| - 2.8e-25 88.6 0.0 1.8e-12 47.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219852851|ref|YP_002467283.1| - 1.2e-16 60.5 0.1 3.4e-08 33.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219852851|ref|YP_002467283.1| - 1.9e-07 30.6 0.0 0.018 14.9 0.0 2.9 2 0 0 2 2 2 2 PAS domain Laminin_I PF06008.9 gi|219852851|ref|YP_002467283.1| - 5.5e-06 25.8 22.2 0.012 14.9 6.5 3.7 2 2 1 3 3 3 2 Laminin Domain I DUF948 PF06103.6 gi|219852851|ref|YP_002467283.1| - 6.5e-05 22.7 21.9 0.02 14.7 0.7 6.7 6 1 2 8 8 8 3 Bacterial protein of unknown function (DUF948) PAS_10 PF13596.1 gi|219852851|ref|YP_002467283.1| - 0.0014 18.8 0.0 0.089 13.0 0.0 3.3 2 0 0 2 2 2 1 PAS domain DUF1664 PF07889.7 gi|219852851|ref|YP_002467283.1| - 0.044 13.5 15.8 0.26 11.0 1.8 5.9 5 2 1 7 7 7 0 Protein of unknown function (DUF1664) Flu_NS2 PF00601.14 gi|219852851|ref|YP_002467283.1| - 0.078 13.1 2.6 1 9.6 0.4 3.3 2 1 1 3 3 3 0 Influenza non-structural protein (NS2) TMPIT PF07851.8 gi|219852851|ref|YP_002467283.1| - 0.16 11.0 3.8 0.34 9.9 2.6 1.5 1 0 0 1 1 1 0 TMPIT-like protein Vps5 PF09325.5 gi|219852851|ref|YP_002467283.1| - 0.22 10.7 8.3 1.4 8.1 2.4 2.5 2 0 0 2 2 2 0 Vps5 C terminal like Katanin_con80 PF13925.1 gi|219852851|ref|YP_002467283.1| - 0.38 10.4 3.8 0.14 11.8 0.5 1.8 2 0 0 2 2 1 0 con80 domain of Katanin Reo_sigmaC PF04582.7 gi|219852851|ref|YP_002467283.1| - 0.71 8.9 22.3 0.53 9.4 4.6 4.3 4 0 0 4 4 4 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|219852851|ref|YP_002467283.1| - 1.2 8.9 25.1 2.5 7.8 6.5 5.4 3 2 1 4 4 4 0 Laminin Domain II Vps53_N PF04100.7 gi|219852851|ref|YP_002467283.1| - 1.4 7.5 14.9 0.41 9.3 4.9 2.4 2 0 0 2 2 2 0 Vps53-like, N-terminal Syntaxin PF00804.20 gi|219852851|ref|YP_002467283.1| - 3.4 7.8 27.7 4.6 7.4 2.5 6.3 5 3 2 7 7 7 0 Syntaxin Spc7 PF08317.6 gi|219852851|ref|YP_002467283.1| - 5.1 5.6 13.5 2 7.0 5.6 2.7 3 0 0 3 3 3 0 Spc7 kinetochore protein IFT57 PF10498.4 gi|219852851|ref|YP_002467283.1| - 6.4 5.4 9.9 1.2 7.8 3.9 1.9 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 AAA_13 PF13166.1 gi|219852851|ref|YP_002467283.1| - 7.4 4.8 13.8 3.6 5.9 7.7 1.8 1 1 0 1 1 1 0 AAA domain Syntaxin-6_N PF09177.6 gi|219852851|ref|YP_002467283.1| - 9.5 6.6 14.7 63 4.0 4.6 5.1 4 2 2 6 6 5 0 Syntaxin 6, N-terminal PAS_9 PF13426.1 gi|219852852|ref|YP_002467284.1| - 5e-80 264.5 0.1 6.5e-15 55.3 0.0 7.3 7 0 0 7 7 7 7 PAS domain PAS PF00989.19 gi|219852852|ref|YP_002467284.1| - 6e-68 225.7 2.8 2.6e-14 52.9 0.0 7.2 7 0 0 7 7 7 7 PAS fold PAS_4 PF08448.5 gi|219852852|ref|YP_002467284.1| - 1.4e-52 176.4 2.9 3.5e-11 43.1 0.0 7.2 7 0 0 7 7 7 6 PAS fold PAS_8 PF13188.1 gi|219852852|ref|YP_002467284.1| - 5e-40 134.0 1.7 4e-08 32.8 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS_3 PF08447.6 gi|219852852|ref|YP_002467284.1| - 1.3e-14 54.0 0.0 0.011 15.8 0.0 6.8 6 0 0 6 6 6 3 PAS fold PAS_10 PF13596.1 gi|219852852|ref|YP_002467284.1| - 2.9e-09 37.1 0.1 0.00058 20.0 0.0 4.1 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|219852852|ref|YP_002467284.1| - 3.4e-09 36.7 0.6 0.4 10.6 0.0 5.4 5 0 0 5 5 5 3 PAS fold HTH_IclR PF09339.5 gi|219852852|ref|YP_002467284.1| - 1.8e-05 24.2 0.1 4.5e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|219852852|ref|YP_002467284.1| - 0.00019 21.1 0.5 0.00075 19.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|219852852|ref|YP_002467284.1| - 0.00022 20.8 0.2 0.0011 18.5 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|219852852|ref|YP_002467284.1| - 0.011 15.2 0.0 0.061 12.8 0.0 2.3 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|219852852|ref|YP_002467284.1| - 0.012 16.0 0.0 0.033 14.6 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.15 gi|219852852|ref|YP_002467284.1| - 0.016 14.8 0.0 0.049 13.3 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|219852852|ref|YP_002467284.1| - 0.018 14.6 0.0 0.071 12.7 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain TBPIP PF07106.8 gi|219852852|ref|YP_002467284.1| - 0.028 13.9 0.0 0.091 12.3 0.0 1.9 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MarR PF01047.17 gi|219852852|ref|YP_002467284.1| - 0.031 13.9 0.0 0.072 12.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_18 PF12833.2 gi|219852852|ref|YP_002467284.1| - 0.071 13.2 0.0 0.24 11.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|219852852|ref|YP_002467284.1| - 0.072 12.7 0.0 0.28 10.8 0.0 2.0 1 0 0 1 1 1 0 HTH domain DUF45 PF01863.12 gi|219852854|ref|YP_002467286.1| - 6.8e-54 182.7 0.0 7.9e-54 182.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|219852854|ref|YP_002467286.1| - 4.9e-05 23.2 0.1 8.1e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|219852854|ref|YP_002467286.1| - 0.0089 15.7 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF3268 PF11672.3 gi|219852855|ref|YP_002467287.1| - 0.0019 18.2 0.1 0.0019 18.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3268) Prefoldin PF02996.12 gi|219852855|ref|YP_002467287.1| - 0.025 14.2 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 Prefoldin subunit Ets PF00178.17 gi|219852855|ref|YP_002467287.1| - 0.062 13.4 0.5 0.23 11.6 0.2 1.8 1 1 1 2 2 2 0 Ets-domain dUTPase_2 PF08761.6 gi|219852855|ref|YP_002467287.1| - 0.073 13.1 0.2 0.079 13.0 0.1 1.1 1 0 0 1 1 1 0 dUTPase DUF2492 PF10678.4 gi|219852855|ref|YP_002467287.1| - 0.15 12.1 0.2 3.3 7.8 0.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2492) PMSR PF01625.16 gi|219852856|ref|YP_002467288.1| - 3.8e-62 208.7 0.0 4.2e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase EF-hand_1 PF00036.27 gi|219852857|ref|YP_002467289.1| - 0.0029 16.7 5.1 0.02 14.1 0.7 2.7 2 0 0 2 2 2 1 EF hand EF-hand_6 PF13405.1 gi|219852857|ref|YP_002467289.1| - 0.0034 17.1 3.3 0.013 15.3 0.3 2.9 3 0 0 3 3 3 1 EF-hand domain EF-hand_5 PF13202.1 gi|219852857|ref|YP_002467289.1| - 0.028 13.7 3.8 0.032 13.5 0.5 2.8 2 0 0 2 2 2 0 EF hand EF-hand_8 PF13833.1 gi|219852857|ref|YP_002467289.1| - 0.14 11.7 1.6 0.4 10.3 1.1 1.8 1 0 0 1 1 1 0 EF-hand domain pair PAS_8 PF13188.1 gi|219852858|ref|YP_002467290.1| - 0.005 16.6 0.0 0.0086 15.9 0.0 1.4 1 0 0 1 1 1 1 PAS domain GTPase_Cys_C PF12631.2 gi|219852858|ref|YP_002467290.1| - 0.014 15.7 0.9 0.52 10.7 0.6 2.3 1 1 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE PUL PF08324.6 gi|219852858|ref|YP_002467290.1| - 0.074 11.8 0.1 0.094 11.5 0.0 1.1 1 0 0 1 1 1 0 PUL domain DUF904 PF06005.7 gi|219852858|ref|YP_002467290.1| - 0.13 12.5 0.8 0.27 11.5 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) zinc_ribbon_2 PF13240.1 gi|219852859|ref|YP_002467291.1| - 1.4e-07 30.7 9.7 0.00023 20.5 1.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219852859|ref|YP_002467291.1| - 7.9e-06 24.9 8.1 0.0033 16.5 1.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|219852859|ref|YP_002467291.1| - 1.8e-05 24.4 12.0 2.8e-05 23.8 8.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF3311 PF11755.3 gi|219852859|ref|YP_002467291.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) Prok-RING_1 PF14446.1 gi|219852859|ref|YP_002467291.1| - 0.35 10.6 10.7 0.32 10.7 1.4 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|219852859|ref|YP_002467291.1| - 2 8.2 7.3 4.9 7.0 5.1 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|219852859|ref|YP_002467291.1| - 4.5 7.0 10.0 7 6.4 1.1 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Fer4_15 PF13459.1 gi|219852860|ref|YP_002467292.1| - 4.2e-15 56.0 2.7 4.9e-15 55.8 1.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219852860|ref|YP_002467292.1| - 2.2e-12 47.1 2.9 3e-12 46.7 2.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|219852860|ref|YP_002467292.1| - 4e-05 23.0 6.7 0.00078 18.9 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852860|ref|YP_002467292.1| - 0.00055 19.6 6.0 0.0007 19.3 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219852860|ref|YP_002467292.1| - 0.0013 18.4 4.6 0.0024 17.6 3.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852860|ref|YP_002467292.1| - 0.0059 16.9 3.8 0.071 13.5 0.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219852860|ref|YP_002467292.1| - 0.0063 16.3 4.0 0.0094 15.7 1.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852860|ref|YP_002467292.1| - 0.013 15.3 2.3 0.013 15.3 1.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219852860|ref|YP_002467292.1| - 0.041 14.1 4.1 0.23 11.7 3.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219852860|ref|YP_002467292.1| - 0.088 12.8 4.3 0.32 11.0 3.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|219852860|ref|YP_002467292.1| - 0.21 11.4 2.7 0.61 9.9 1.9 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.2 gi|219852860|ref|YP_002467292.1| - 2.2 8.8 6.0 1.1 9.8 0.6 2.3 3 0 0 3 3 2 0 4Fe-4S binding domain Lactamase_B_2 PF12706.2 gi|219852861|ref|YP_002467293.1| - 0.021 14.3 0.0 0.055 13.0 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|219852861|ref|YP_002467293.1| - 0.027 14.1 0.0 0.064 12.8 0.0 1.7 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily MarR PF01047.17 gi|219852866|ref|YP_002467298.1| - 2.4e-12 46.3 0.0 5.1e-12 45.3 0.0 1.5 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|219852866|ref|YP_002467298.1| - 7.2e-08 31.9 0.0 1.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|219852866|ref|YP_002467298.1| - 5.3e-06 26.6 0.0 7.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|219852866|ref|YP_002467298.1| - 4.4e-05 23.1 0.1 0.0013 18.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|219852866|ref|YP_002467298.1| - 0.0001 21.6 0.1 0.00036 19.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|219852866|ref|YP_002467298.1| - 0.00096 18.6 0.0 0.0014 18.0 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit PadR PF03551.9 gi|219852866|ref|YP_002467298.1| - 0.047 13.4 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|219852866|ref|YP_002467298.1| - 0.077 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF692 PF05114.8 gi|219852866|ref|YP_002467298.1| - 0.12 11.2 0.4 0.39 9.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF692) DUF161 PF02588.10 gi|219852867|ref|YP_002467299.1| - 1.1e-08 35.2 32.7 0.00037 20.7 9.1 2.8 2 2 0 2 2 2 2 Uncharacterized BCR, YitT family COG1284 CbiQ PF02361.11 gi|219852867|ref|YP_002467299.1| - 0.029 13.9 6.0 0.027 14.0 3.5 1.5 1 1 0 1 1 1 0 Cobalt transport protein Cad PF03596.8 gi|219852867|ref|YP_002467299.1| - 1.7 8.3 12.3 0.21 11.2 4.9 2.0 2 1 0 2 2 2 0 Cadmium resistance transporter FixP_N PF14715.1 gi|219852870|ref|YP_002467302.1| - 2.1 7.8 7.2 0.61 9.5 0.2 2.9 3 0 0 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP DUF3397 PF11877.3 gi|219852870|ref|YP_002467302.1| - 2.7 8.0 12.7 0.83 9.6 4.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3397) RNase_T PF00929.19 gi|219852875|ref|YP_002467307.1| - 1.2e-18 67.9 0.0 1.4e-18 67.7 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DDE_Tnp_1 PF01609.16 gi|219852876|ref|YP_002467308.1| - 3.8e-15 56.0 3.6 9.7e-15 54.6 2.5 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|219852876|ref|YP_002467308.1| - 0.0014 18.1 0.8 0.0023 17.5 0.5 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|219852876|ref|YP_002467308.1| - 0.0019 18.3 0.2 0.0043 17.1 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|219852876|ref|YP_002467308.1| - 0.044 13.6 0.1 0.091 12.6 0.1 1.6 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.1 gi|219852876|ref|YP_002467308.1| - 0.095 12.7 2.7 0.31 11.0 1.9 2.0 1 1 0 1 1 1 0 Transposase DDE domain SBP_bac_11 PF13531.1 gi|219852878|ref|YP_002467310.1| - 3.8e-45 154.2 8.1 1.2e-32 113.4 1.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|219852878|ref|YP_002467310.1| - 1.7e-18 67.0 6.9 1.7e-18 67.0 4.8 2.4 2 1 0 2 2 2 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|219852878|ref|YP_002467310.1| - 5.5e-12 46.0 2.4 5.5e-12 46.0 1.7 3.2 3 1 1 4 4 4 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|219852878|ref|YP_002467310.1| - 0.0052 16.1 0.2 0.28 10.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|219852878|ref|YP_002467310.1| - 0.008 15.1 0.1 0.13 11.1 0.0 2.4 2 1 0 2 2 2 1 PBP superfamily domain DUF3963 PF13124.1 gi|219852878|ref|YP_002467310.1| - 0.036 13.8 2.1 0.084 12.6 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3963) TBPIP_N PF15517.1 gi|219852878|ref|YP_002467310.1| - 0.042 13.4 0.1 1 9.0 0.0 2.4 2 0 0 2 2 2 0 TBP-interacting protein N-terminus LysR_substrate PF03466.15 gi|219852878|ref|YP_002467310.1| - 0.064 12.3 0.0 2.2 7.3 0.0 2.3 2 0 0 2 2 2 0 LysR substrate binding domain BPD_transp_1 PF00528.17 gi|219852879|ref|YP_002467311.1| - 6.4e-16 58.4 19.7 6.4e-16 58.4 13.7 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MR_MLE_N PF02746.11 gi|219852879|ref|YP_002467311.1| - 0.036 14.0 0.1 0.083 12.8 0.0 1.7 2 0 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YbjM PF11045.3 gi|219852879|ref|YP_002467311.1| - 0.11 12.3 1.7 0.14 11.8 0.2 1.9 2 0 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae FtsX PF02687.16 gi|219852879|ref|YP_002467311.1| - 1.6 8.5 29.8 0.13 12.0 8.6 2.5 1 1 1 2 2 2 0 FtsX-like permease family ABC_tran PF00005.22 gi|219852880|ref|YP_002467312.1| - 6.1e-31 107.5 0.0 1.3e-30 106.4 0.0 1.6 2 0 0 2 2 1 1 ABC transporter TOBE PF03459.12 gi|219852880|ref|YP_002467312.1| - 1.5e-13 50.6 0.3 1.5e-13 50.6 0.2 2.7 3 1 0 3 3 2 1 TOBE domain AAA_21 PF13304.1 gi|219852880|ref|YP_002467312.1| - 5.6e-13 49.5 0.0 2.4e-06 27.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|219852880|ref|YP_002467312.1| - 2e-09 37.2 0.2 7.9e-09 35.3 0.1 2.1 2 0 0 2 2 1 1 TOBE domain AAA_16 PF13191.1 gi|219852880|ref|YP_002467312.1| - 5.4e-07 29.7 0.1 2.2e-06 27.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|219852880|ref|YP_002467312.1| - 2.5e-05 23.5 0.0 0.013 14.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|219852880|ref|YP_002467312.1| - 3e-05 23.3 0.0 0.041 13.1 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|219852880|ref|YP_002467312.1| - 0.00019 20.6 0.2 0.00033 19.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 TOBE_3 PF12857.2 gi|219852880|ref|YP_002467312.1| - 0.00021 21.0 0.0 0.00046 19.9 0.0 1.6 1 0 0 1 1 1 1 TOBE-like domain AAA_17 PF13207.1 gi|219852880|ref|YP_002467312.1| - 0.00028 21.6 0.5 0.00093 20.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|219852880|ref|YP_002467312.1| - 0.00057 19.3 0.2 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|219852880|ref|YP_002467312.1| - 0.0095 16.2 0.1 0.02 15.2 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|219852880|ref|YP_002467312.1| - 0.013 15.6 0.2 0.058 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|219852880|ref|YP_002467312.1| - 0.021 15.1 0.1 0.033 14.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|219852880|ref|YP_002467312.1| - 0.022 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|219852880|ref|YP_002467312.1| - 0.03 13.7 0.1 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|219852880|ref|YP_002467312.1| - 0.047 12.4 0.2 0.073 11.8 0.1 1.3 1 0 0 1 1 1 0 ArgK protein Rad17 PF03215.10 gi|219852880|ref|YP_002467312.1| - 0.058 12.0 0.0 0.081 11.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|219852880|ref|YP_002467312.1| - 0.066 13.0 0.4 0.13 12.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|219852880|ref|YP_002467312.1| - 0.08 12.8 0.1 1.1 9.2 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|219852880|ref|YP_002467312.1| - 0.14 12.1 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|219852880|ref|YP_002467312.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MCR_beta PF02241.13 gi|219852881|ref|YP_002467313.1| - 2.8e-112 374.1 2.7 2.8e-112 374.1 1.9 1.6 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|219852881|ref|YP_002467313.1| - 3.2e-69 232.0 2.0 4.7e-69 231.4 1.4 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.9 gi|219852882|ref|YP_002467314.1| - 4.1e-39 133.5 0.0 4.7e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.7 gi|219852883|ref|YP_002467315.1| - 1.6e-33 115.6 5.8 5.3e-31 107.3 0.1 3.0 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.11 gi|219852884|ref|YP_002467316.1| - 6.6e-119 395.5 0.1 7.5e-119 395.3 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|219852885|ref|YP_002467317.1| - 3.6e-134 446.0 0.1 4.9e-134 445.5 0.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|219852885|ref|YP_002467317.1| - 5.2e-66 220.4 3.7 1e-65 219.4 2.6 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MtrE PF04206.7 gi|219852886|ref|YP_002467318.1| - 3.8e-108 360.6 11.1 4.4e-108 360.3 7.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E 5TM-5TMR_LYT PF07694.7 gi|219852886|ref|YP_002467318.1| - 3.5 6.9 13.6 0.28 10.5 1.8 2.7 2 1 0 2 2 2 0 5TMR of 5TMR-LYT MtrD PF04207.7 gi|219852887|ref|YP_002467319.1| - 9.9e-72 240.9 26.3 1.3e-71 240.5 18.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|219852888|ref|YP_002467320.1| - 1.2e-61 208.1 28.8 1.6e-60 204.3 19.9 1.9 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.7 gi|219852889|ref|YP_002467321.1| - 2.4e-17 62.7 0.1 3.1e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.9 gi|219852890|ref|YP_002467322.1| - 8.7e-73 243.4 1.0 1.2e-72 243.0 0.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|219852890|ref|YP_002467322.1| - 0.078 12.2 5.1 0.49 9.6 3.5 2.2 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|219852891|ref|YP_002467323.1| - 8.9e-22 76.1 1.7 9.4e-22 76.0 1.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF2453 PF10507.4 gi|219852891|ref|YP_002467323.1| - 0.07 12.9 0.2 0.074 12.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2453) MtrA PF04208.9 gi|219852892|ref|YP_002467324.1| - 1.5e-72 242.7 1.0 1.9e-72 242.3 0.7 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.8 gi|219852892|ref|YP_002467324.1| - 7.2e-23 80.0 1.3 9.2e-23 79.7 0.2 1.6 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G HSBP1 PF06825.7 gi|219852892|ref|YP_002467324.1| - 0.1 12.1 0.2 0.3 10.6 0.2 1.7 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Osmo_CC PF08946.5 gi|219852892|ref|YP_002467324.1| - 0.14 12.1 0.8 0.5 10.4 0.0 2.1 2 0 0 2 2 2 0 Osmosensory transporter coiled coil DUF2536 PF10750.4 gi|219852892|ref|YP_002467324.1| - 0.16 11.5 0.5 2 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) MtrH PF02007.13 gi|219852893|ref|YP_002467325.1| - 1.4e-102 342.7 0.1 1.9e-102 342.2 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit CPSase_sm_chain PF00988.17 gi|219852894|ref|YP_002467326.1| - 6.5e-44 148.6 0.1 1e-43 147.9 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|219852894|ref|YP_002467326.1| - 7.3e-37 126.6 0.0 1.2e-36 126.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|219852894|ref|YP_002467326.1| - 2.9e-05 23.6 0.0 0.0027 17.1 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|219852895|ref|YP_002467327.1| - 3.5e-109 363.0 0.4 4.6e-70 235.1 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|219852895|ref|YP_002467327.1| - 9.9e-46 154.3 0.1 4.5e-22 78.2 0.0 3.1 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|219852895|ref|YP_002467327.1| - 3.8e-38 131.0 0.0 3e-18 66.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|219852895|ref|YP_002467327.1| - 7e-35 119.4 0.0 2.3e-34 117.7 0.0 2.0 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|219852895|ref|YP_002467327.1| - 9.4e-26 90.3 0.0 2.7e-13 49.3 0.0 4.1 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|219852895|ref|YP_002467327.1| - 2.4e-19 69.0 2.0 2.3e-17 62.6 0.0 4.1 4 1 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|219852895|ref|YP_002467327.1| - 1.4e-17 63.5 0.0 1.6e-07 30.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|219852895|ref|YP_002467327.1| - 1.4e-14 54.0 0.1 2.6e-06 26.9 0.0 2.9 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|219852895|ref|YP_002467327.1| - 4.9e-12 46.0 0.2 2.1e-05 24.4 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain Glyco_trans_4_2 PF13477.1 gi|219852895|ref|YP_002467327.1| - 0.00048 19.9 0.1 1 9.1 0.0 3.6 2 2 1 3 3 3 1 Glycosyl transferase 4-like ATP-grasp_5 PF13549.1 gi|219852895|ref|YP_002467327.1| - 0.0005 19.3 0.8 0.16 11.1 0.0 3.9 5 0 0 5 5 5 1 ATP-grasp domain Hydrolase PF00702.21 gi|219852895|ref|YP_002467327.1| - 0.0084 16.5 0.2 9.3 6.5 0.0 3.4 3 1 0 3 3 3 0 haloacid dehalogenase-like hydrolase STAS PF01740.16 gi|219852895|ref|YP_002467327.1| - 0.015 14.6 0.0 2 7.8 0.0 2.9 2 0 0 2 2 2 0 STAS domain Sigma70_r4_2 PF08281.7 gi|219852895|ref|YP_002467327.1| - 0.032 13.6 0.0 0.93 9.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|219852895|ref|YP_002467327.1| - 0.061 12.8 0.0 3.1 7.4 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain TIR_2 PF13676.1 gi|219852895|ref|YP_002467327.1| - 0.086 12.9 0.0 0.35 11.0 0.0 2.1 1 0 0 1 1 1 0 TIR domain Arginosuc_synth PF00764.14 gi|219852896|ref|YP_002467328.1| - 8.2e-161 535.3 0.0 9.6e-161 535.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|219852896|ref|YP_002467328.1| - 0.0034 16.3 0.0 0.0086 15.0 0.0 1.7 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|219852896|ref|YP_002467328.1| - 0.01 15.1 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|219852896|ref|YP_002467328.1| - 0.011 15.2 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase UPF0020 PF01170.13 gi|219852897|ref|YP_002467329.1| - 1.8e-29 102.5 0.0 2.5e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|219852897|ref|YP_002467329.1| - 9.4e-12 44.9 0.0 1.9e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|219852897|ref|YP_002467329.1| - 5e-06 26.1 0.0 0.00022 20.8 0.0 2.7 3 0 0 3 3 3 1 DNA methylase Methyltransf_11 PF08241.7 gi|219852897|ref|YP_002467329.1| - 7.4e-06 26.3 0.0 2.3e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219852897|ref|YP_002467329.1| - 2.5e-05 23.9 0.0 3.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|219852897|ref|YP_002467329.1| - 0.013 15.3 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 THUMP domain Methyltransf_18 PF12847.2 gi|219852897|ref|YP_002467329.1| - 0.021 15.3 0.0 0.1 13.2 0.0 2.1 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219852897|ref|YP_002467329.1| - 0.12 12.6 0.0 0.35 11.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|219852897|ref|YP_002467329.1| - 0.16 11.0 0.0 0.37 9.8 0.0 1.6 1 1 1 2 2 2 0 N-6 DNA Methylase E1-E2_ATPase PF00122.15 gi|219852898|ref|YP_002467330.1| - 6.7e-51 172.5 0.1 6.7e-51 172.5 0.1 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|219852898|ref|YP_002467330.1| - 1.3e-42 146.6 0.5 2.1e-42 145.9 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219852898|ref|YP_002467330.1| - 1.2e-13 51.6 0.0 2.7e-13 50.5 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Peptidase_M24 PF00557.19 gi|219852898|ref|YP_002467330.1| - 0.011 15.3 0.2 0.044 13.3 0.1 1.9 1 1 0 2 2 2 0 Metallopeptidase family M24 Hydrolase_3 PF08282.7 gi|219852898|ref|YP_002467330.1| - 0.028 14.0 0.4 0.11 12.0 0.2 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4098 PF13345.1 gi|219852898|ref|YP_002467330.1| - 0.092 12.7 1.0 0.21 11.5 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4098) FeoC PF09012.5 gi|219852899|ref|YP_002467331.1| - 3e-05 23.6 0.2 3.9e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|219852899|ref|YP_002467331.1| - 0.002 17.5 0.0 0.0031 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|219852899|ref|YP_002467331.1| - 0.002 17.8 0.1 0.003 17.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|219852899|ref|YP_002467331.1| - 0.0034 16.9 0.1 0.2 11.3 0.0 2.0 2 0 0 2 2 2 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|219852899|ref|YP_002467331.1| - 0.0051 16.4 0.2 0.023 14.3 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_CodY PF08222.6 gi|219852899|ref|YP_002467331.1| - 0.0098 15.2 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|219852899|ref|YP_002467331.1| - 0.024 14.4 0.3 0.039 13.7 0.2 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|219852899|ref|YP_002467331.1| - 0.031 13.9 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|219852899|ref|YP_002467331.1| - 0.034 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|219852899|ref|YP_002467331.1| - 0.039 14.0 0.1 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.11 gi|219852899|ref|YP_002467331.1| - 0.057 12.5 0.0 0.072 12.2 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DUF4423 PF14394.1 gi|219852899|ref|YP_002467331.1| - 0.06 12.8 0.0 0.074 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|219852899|ref|YP_002467331.1| - 0.083 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_39 PF14090.1 gi|219852899|ref|YP_002467331.1| - 0.087 12.3 0.2 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.15 gi|219852899|ref|YP_002467331.1| - 0.088 12.2 0.1 0.2 11.1 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family MarR PF01047.17 gi|219852899|ref|YP_002467331.1| - 0.1 12.3 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|219852899|ref|YP_002467331.1| - 0.12 12.3 0.0 0.58 10.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain FeoB_N PF02421.13 gi|219852901|ref|YP_002467333.1| - 1.3e-66 222.6 0.0 2.2e-66 221.9 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|219852901|ref|YP_002467333.1| - 4e-51 171.4 12.6 1.8e-32 111.4 1.5 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|219852901|ref|YP_002467333.1| - 2.9e-22 77.8 2.8 2.9e-22 77.8 1.9 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|219852901|ref|YP_002467333.1| - 8.1e-18 64.4 0.0 1.6e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|219852901|ref|YP_002467333.1| - 0.00073 19.0 0.1 0.031 13.7 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|219852901|ref|YP_002467333.1| - 0.0012 18.1 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|219852901|ref|YP_002467333.1| - 0.0012 18.0 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 AIG1 family ATP_bind_1 PF03029.12 gi|219852901|ref|YP_002467333.1| - 0.0017 17.9 0.0 0.02 14.4 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|219852901|ref|YP_002467333.1| - 0.0033 17.2 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 2 Dynamin family Arf PF00025.16 gi|219852901|ref|YP_002467333.1| - 0.021 14.0 0.0 0.036 13.3 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family ArgK PF03308.11 gi|219852901|ref|YP_002467333.1| - 0.022 13.5 0.1 1.7 7.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Miro PF08477.8 gi|219852901|ref|YP_002467333.1| - 0.025 15.0 0.0 0.049 14.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein FeoA PF04023.9 gi|219852902|ref|YP_002467334.1| - 1.8e-20 72.6 0.1 2.2e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 FeoA domain DUF630 PF04783.7 gi|219852902|ref|YP_002467334.1| - 0.13 12.2 0.0 0.37 10.7 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF630) FeoA PF04023.9 gi|219852903|ref|YP_002467335.1| - 6.4e-12 45.2 0.0 7.7e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.14 gi|219852904|ref|YP_002467336.1| - 3e-20 71.9 0.1 5.6e-20 71.0 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|219852904|ref|YP_002467336.1| - 4.3e-14 51.9 0.2 2.7e-13 49.4 0.1 2.0 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|219852904|ref|YP_002467336.1| - 0.00015 21.4 0.0 0.00027 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|219852904|ref|YP_002467336.1| - 0.00024 20.6 0.0 0.00043 19.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|219852904|ref|YP_002467336.1| - 0.00076 19.2 0.0 0.0073 16.0 0.0 2.1 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|219852904|ref|YP_002467336.1| - 0.0015 17.9 0.2 0.0076 15.7 0.1 2.1 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|219852904|ref|YP_002467336.1| - 0.0018 18.5 0.0 0.0037 17.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|219852904|ref|YP_002467336.1| - 0.0028 17.3 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|219852904|ref|YP_002467336.1| - 0.003 17.4 0.1 0.007 16.2 0.0 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|219852904|ref|YP_002467336.1| - 0.0041 17.2 0.0 0.0072 16.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|219852904|ref|YP_002467336.1| - 0.01 15.5 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator Terminase_5 PF06056.7 gi|219852904|ref|YP_002467336.1| - 0.043 13.3 0.0 0.17 11.4 0.0 1.9 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) LexA_DNA_bind PF01726.11 gi|219852904|ref|YP_002467336.1| - 0.12 11.8 0.1 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain HTH_6 PF01418.12 gi|219852904|ref|YP_002467336.1| - 0.13 12.0 0.0 4.7 7.0 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain, rpiR family HrcA_DNA-bdg PF03444.10 gi|219852904|ref|YP_002467336.1| - 0.13 11.6 0.0 2.8 7.4 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Cation_efflux PF01545.16 gi|219852905|ref|YP_002467337.1| - 2.5e-57 194.1 11.6 2.8e-57 193.9 8.0 1.0 1 0 0 1 1 1 1 Cation efflux family Phage_holin_3 PF05106.7 gi|219852905|ref|YP_002467337.1| - 0.076 13.0 4.0 0.043 13.8 0.9 2.1 2 1 0 2 2 2 0 Phage holin family (Lysis protein S) ABC_tran PF00005.22 gi|219852906|ref|YP_002467338.1| - 6.5e-32 110.6 0.0 1.1e-31 109.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219852906|ref|YP_002467338.1| - 3.9e-20 72.9 0.0 1.8e-12 47.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219852906|ref|YP_002467338.1| - 1.5e-06 27.6 0.0 0.0033 16.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|219852906|ref|YP_002467338.1| - 3.3e-06 26.4 0.0 0.00037 19.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|219852906|ref|YP_002467338.1| - 0.0003 20.2 0.0 0.00059 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|219852906|ref|YP_002467338.1| - 0.00043 18.8 0.0 0.17 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|219852906|ref|YP_002467338.1| - 0.00072 19.5 0.0 0.0036 17.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|219852906|ref|YP_002467338.1| - 0.0037 17.1 0.2 0.056 13.3 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|219852906|ref|YP_002467338.1| - 0.0051 17.1 0.0 0.0082 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|219852906|ref|YP_002467338.1| - 0.0067 15.6 0.0 0.019 14.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|219852906|ref|YP_002467338.1| - 0.022 14.7 0.0 0.37 10.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|219852906|ref|YP_002467338.1| - 0.035 13.1 0.0 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.1 gi|219852906|ref|YP_002467338.1| - 0.053 13.6 0.0 0.61 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|219852906|ref|YP_002467338.1| - 0.057 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|219852906|ref|YP_002467338.1| - 0.093 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|219852906|ref|YP_002467338.1| - 0.1 12.9 0.0 3 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|219852906|ref|YP_002467338.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|219852906|ref|YP_002467338.1| - 0.12 13.1 0.0 0.34 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|219852906|ref|YP_002467338.1| - 0.17 11.2 0.0 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Miro PF08477.8 gi|219852906|ref|YP_002467338.1| - 0.17 12.3 0.0 0.37 11.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein CbiQ PF02361.11 gi|219852907|ref|YP_002467339.1| - 2.5e-35 122.0 2.5 3.5e-35 121.5 1.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.10 gi|219852908|ref|YP_002467340.1| - 7.2e-14 51.5 0.0 8.9e-14 51.2 0.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN ATPase_gene1 PF09527.5 gi|219852908|ref|YP_002467340.1| - 0.08 12.7 0.2 0.08 12.7 0.2 1.9 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) SVM_signal PF12113.3 gi|219852908|ref|YP_002467340.1| - 0.12 12.2 1.0 0.2 11.5 0.7 1.4 1 0 0 1 1 1 0 SVM protein signal sequence UPF0154 PF03672.8 gi|219852908|ref|YP_002467340.1| - 0.19 11.3 0.1 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) CbiM PF01891.11 gi|219852909|ref|YP_002467341.1| - 3.5e-53 180.2 19.6 4e-53 180.0 13.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region YqzM PF14141.1 gi|219852909|ref|YP_002467341.1| - 0.08 12.7 2.3 0.32 10.8 1.6 2.0 1 0 0 1 1 1 0 YqzM-like protein 5TM-5TMR_LYT PF07694.7 gi|219852909|ref|YP_002467341.1| - 0.53 9.5 22.2 0.29 10.4 13.8 1.7 1 1 1 2 2 2 0 5TMR of 5TMR-LYT Transgly_assoc PF04226.8 gi|219852909|ref|YP_002467341.1| - 0.68 10.0 11.4 1.6 8.9 4.7 3.4 2 1 0 2 2 2 0 Transglycosylase associated protein DUF2985 PF11204.3 gi|219852909|ref|YP_002467341.1| - 2.7 7.8 6.8 7.7 6.3 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2985) Arginase PF00491.16 gi|219852911|ref|YP_002467343.1| - 2.2e-64 217.4 0.0 2.5e-64 217.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family Uma2 PF05685.7 gi|219852911|ref|YP_002467343.1| - 0.00031 20.1 0.0 0.00068 19.0 0.0 1.5 2 0 0 2 2 2 1 Putative restriction endonuclease eIF-5a PF01287.15 gi|219852912|ref|YP_002467344.1| - 1.3e-10 41.0 1.2 2.3e-10 40.2 0.9 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Macscav_rec PF03523.8 gi|219852912|ref|YP_002467344.1| - 0.005 16.5 0.1 0.0083 15.8 0.1 1.3 1 0 0 1 1 1 1 Macrophage scavenger receptor EFP_N PF08207.7 gi|219852912|ref|YP_002467344.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain Inositol_P PF00459.20 gi|219852913|ref|YP_002467345.1| - 4.4e-38 131.1 0.0 5.5e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|219852913|ref|YP_002467345.1| - 3.5e-05 22.7 0.0 5e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase NAD_kinase PF01513.16 gi|219852914|ref|YP_002467346.1| - 2.2e-53 180.9 0.0 2.5e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|219852914|ref|YP_002467346.1| - 0.0093 15.4 0.1 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Radical_SAM PF04055.16 gi|219852915|ref|YP_002467347.1| - 9.5e-09 35.6 0.0 1.5e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219852915|ref|YP_002467347.1| - 1.3e-06 28.4 0.0 2.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219852915|ref|YP_002467347.1| - 0.0022 18.1 0.0 0.0036 17.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rrf2 PF02082.15 gi|219852915|ref|YP_002467347.1| - 0.049 13.7 0.0 0.099 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|219852915|ref|YP_002467347.1| - 0.051 13.2 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|219852915|ref|YP_002467347.1| - 0.087 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DDE_Tnp_1 PF01609.16 gi|219852917|ref|YP_002467349.1| - 4.5e-17 62.2 1.6 1e-16 61.1 1.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|219852917|ref|YP_002467349.1| - 0.00023 21.2 0.2 0.00048 20.2 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|219852917|ref|YP_002467349.1| - 0.00089 18.8 0.5 0.0014 18.2 0.3 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease ABC_tran PF00005.22 gi|219852918|ref|YP_002467350.1| - 3.2e-53 179.6 0.0 6.1e-27 94.5 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|219852918|ref|YP_002467350.1| - 2.9e-09 37.3 0.1 0.042 13.8 0.3 4.2 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|219852918|ref|YP_002467350.1| - 1.7e-07 31.3 0.1 0.0076 16.2 0.0 3.0 2 2 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|219852918|ref|YP_002467350.1| - 2.9e-07 30.2 0.0 0.038 13.8 0.0 3.3 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|219852918|ref|YP_002467350.1| - 4e-06 27.6 0.3 0.015 16.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|219852918|ref|YP_002467350.1| - 5.3e-06 25.8 1.1 0.065 12.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219852918|ref|YP_002467350.1| - 2.2e-05 23.7 0.2 0.13 11.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|219852918|ref|YP_002467350.1| - 3.5e-05 23.1 6.5 0.01 15.0 0.0 3.7 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain PRK PF00485.13 gi|219852918|ref|YP_002467350.1| - 0.00029 20.4 0.6 0.5 9.8 0.1 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.20 gi|219852918|ref|YP_002467350.1| - 0.00069 19.1 0.4 0.55 9.7 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|219852918|ref|YP_002467350.1| - 0.00078 18.9 4.4 0.73 9.2 0.1 3.3 2 1 1 3 3 3 1 AAA-like domain MobB PF03205.9 gi|219852918|ref|YP_002467350.1| - 0.00093 18.9 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|219852918|ref|YP_002467350.1| - 0.0011 19.4 0.1 2.2 8.7 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein AAA_22 PF13401.1 gi|219852918|ref|YP_002467350.1| - 0.0012 19.0 4.1 2 8.5 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|219852918|ref|YP_002467350.1| - 0.0014 18.9 0.1 0.083 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|219852918|ref|YP_002467350.1| - 0.0017 17.4 0.2 1.6 7.6 0.0 3.3 4 0 0 4 4 3 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|219852918|ref|YP_002467350.1| - 0.0023 17.8 0.6 2.2 8.2 0.0 3.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|219852918|ref|YP_002467350.1| - 0.0029 17.2 0.3 1.5 8.4 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|219852918|ref|YP_002467350.1| - 0.0033 16.8 0.9 1.8 7.9 0.0 3.4 4 0 0 4 4 4 1 AAA domain DUF87 PF01935.12 gi|219852918|ref|YP_002467350.1| - 0.0076 16.0 3.4 3.3 7.4 0.3 3.1 3 0 0 3 3 3 1 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|219852918|ref|YP_002467350.1| - 0.0081 15.7 0.4 0.74 9.4 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|219852918|ref|YP_002467350.1| - 0.013 15.8 2.4 0.43 10.8 0.4 2.9 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|219852918|ref|YP_002467350.1| - 0.014 14.8 0.1 1.4 8.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.11 gi|219852918|ref|YP_002467350.1| - 0.019 14.2 0.2 1.5 7.9 0.1 2.7 2 1 0 2 2 2 0 PhoH-like protein AAA_13 PF13166.1 gi|219852918|ref|YP_002467350.1| - 0.028 12.8 0.1 0.64 8.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|219852918|ref|YP_002467350.1| - 0.032 13.6 1.5 4.4 6.6 0.0 3.7 4 1 0 4 4 4 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|219852918|ref|YP_002467350.1| - 0.032 13.0 2.4 3.4 6.4 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.1 gi|219852918|ref|YP_002467350.1| - 0.037 13.7 0.2 2.3 8.0 0.0 3.2 2 0 0 2 2 2 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|219852918|ref|YP_002467350.1| - 0.062 12.7 0.1 6.8 6.1 0.0 2.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|219852918|ref|YP_002467350.1| - 0.086 13.0 0.3 22 5.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase zf-IS66 PF13005.2 gi|219852918|ref|YP_002467350.1| - 0.093 12.7 0.1 0.62 10.0 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 KaiC PF06745.8 gi|219852918|ref|YP_002467350.1| - 0.16 11.0 2.9 22 4.0 0.2 3.6 4 0 0 4 4 4 0 KaiC AAA_33 PF13671.1 gi|219852918|ref|YP_002467350.1| - 0.17 11.7 1.5 4.7 7.0 0.1 3.0 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|219852918|ref|YP_002467350.1| - 0.22 11.1 2.8 9.5 5.8 0.2 3.0 3 0 0 3 3 3 0 NACHT domain AAA_24 PF13479.1 gi|219852918|ref|YP_002467350.1| - 0.27 10.8 1.5 9 5.8 0.1 3.1 3 0 0 3 3 3 0 AAA domain zf-C4_Topoisom PF01396.14 gi|219852918|ref|YP_002467350.1| - 1.1 8.7 2.9 0.4 10.2 0.2 1.6 2 0 0 2 2 1 0 Topoisomerase DNA binding C4 zinc finger DUF134 PF02001.11 gi|219852919|ref|YP_002467351.1| - 3e-22 78.4 0.0 4e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|219852919|ref|YP_002467351.1| - 2.5e-08 33.2 0.1 4.6e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|219852919|ref|YP_002467351.1| - 3.3e-07 30.1 0.1 5e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.11 gi|219852919|ref|YP_002467351.1| - 4.5e-06 25.8 0.3 7.5e-06 25.1 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|219852919|ref|YP_002467351.1| - 0.00016 21.2 0.2 0.00041 19.9 0.2 1.7 1 1 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|219852919|ref|YP_002467351.1| - 0.0013 18.3 0.1 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.2 gi|219852919|ref|YP_002467351.1| - 0.0037 17.4 0.4 0.0068 16.6 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|219852919|ref|YP_002467351.1| - 0.0052 16.9 0.5 0.049 13.7 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|219852919|ref|YP_002467351.1| - 0.0059 16.5 2.7 0.014 15.3 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|219852919|ref|YP_002467351.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_3 PF01381.17 gi|219852919|ref|YP_002467351.1| - 0.011 15.5 1.0 0.03 14.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_1 PF00126.22 gi|219852919|ref|YP_002467351.1| - 0.016 14.9 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.1 gi|219852919|ref|YP_002467351.1| - 0.024 14.8 4.5 0.1 12.8 3.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|219852919|ref|YP_002467351.1| - 0.034 13.9 0.1 0.064 13.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|219852919|ref|YP_002467351.1| - 0.072 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_4 PF13613.1 gi|219852919|ref|YP_002467351.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF169 PF02596.10 gi|219852921|ref|YP_002467353.1| - 2.5e-67 226.4 0.0 2.8e-67 226.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 CTDII PF01556.13 gi|219852922|ref|YP_002467354.1| - 2.1e-30 104.4 0.4 9.5e-20 70.2 0.0 3.4 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|219852922|ref|YP_002467354.1| - 3.8e-28 97.0 2.3 6.3e-28 96.2 1.6 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|219852922|ref|YP_002467354.1| - 5.6e-12 45.5 20.1 1.2e-11 44.4 13.9 1.6 1 0 0 1 1 1 1 DnaJ central domain DUF2265 PF10023.4 gi|219852922|ref|YP_002467354.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) Prok-RING_1 PF14446.1 gi|219852922|ref|YP_002467354.1| - 1.2 8.9 8.0 2.7 7.7 0.6 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|219852922|ref|YP_002467354.1| - 3.4 7.5 13.4 26 4.7 9.3 2.2 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|219852922|ref|YP_002467354.1| - 6.6 6.4 10.8 2.8 7.6 1.4 2.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family HSP70 PF00012.15 gi|219852923|ref|YP_002467355.1| - 3e-236 785.0 19.6 1e-210 700.6 9.3 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|219852923|ref|YP_002467355.1| - 9.4e-18 63.8 6.3 1.9e-17 62.8 4.4 1.5 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|219852923|ref|YP_002467355.1| - 0.0066 16.0 0.0 0.029 14.0 0.0 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|219852923|ref|YP_002467355.1| - 0.22 11.3 11.0 0.5 10.2 1.4 4.6 3 3 0 3 3 3 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|219852923|ref|YP_002467355.1| - 1.1 8.2 8.6 0.13 11.3 0.1 3.3 4 1 0 4 4 4 0 Hydantoinase/oxoprolinase GrpE PF01025.14 gi|219852924|ref|YP_002467356.1| - 2.4e-42 144.2 1.3 2.8e-42 144.0 0.9 1.1 1 0 0 1 1 1 1 GrpE Sec23_helical PF04815.10 gi|219852924|ref|YP_002467356.1| - 0.045 13.1 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 Sec23/Sec24 helical domain FTA4 PF13093.1 gi|219852924|ref|YP_002467356.1| - 0.056 12.8 0.3 0.091 12.1 0.2 1.3 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Hemagglutinin PF00509.13 gi|219852924|ref|YP_002467356.1| - 0.14 10.2 0.8 0.18 9.8 0.5 1.0 1 0 0 1 1 1 0 Haemagglutinin AICARFT_IMPCHas PF01808.13 gi|219852925|ref|YP_002467357.1| - 3.7e-99 331.7 0.0 4.5e-99 331.4 0.0 1.0 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|219852925|ref|YP_002467357.1| - 1.6e-20 72.8 0.0 2.9e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 MGS-like domain DUF4013 PF13197.1 gi|219852927|ref|YP_002467359.1| - 6e-37 126.5 36.3 6e-37 126.5 25.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF4013 PF13197.1 gi|219852928|ref|YP_002467360.1| - 1.9e-36 124.9 35.4 1.9e-36 124.9 24.6 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Flavodoxin_5 PF12724.2 gi|219852929|ref|YP_002467361.1| - 9.7e-11 41.8 0.0 1.3e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|219852929|ref|YP_002467361.1| - 5.8e-08 32.3 0.0 1.3e-07 31.2 0.0 1.5 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|219852929|ref|YP_002467361.1| - 0.017 14.4 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin Glyco_tranf_2_3 PF13641.1 gi|219852930|ref|YP_002467362.1| - 3.4e-22 79.3 0.0 2e-16 60.5 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|219852930|ref|YP_002467362.1| - 3.7e-21 75.5 0.1 3.1e-09 36.7 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|219852930|ref|YP_002467362.1| - 1.9e-06 27.7 0.7 4e-06 26.6 0.5 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|219852930|ref|YP_002467362.1| - 0.0016 17.5 0.0 0.86 8.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|219852930|ref|YP_002467362.1| - 0.092 13.0 0.0 1.6 9.0 0.0 2.4 1 1 0 1 1 1 0 Glycosyl transferase family 2 OTCace PF00185.19 gi|219852931|ref|YP_002467363.1| - 2.2e-52 177.0 0.0 3.4e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|219852931|ref|YP_002467363.1| - 3.4e-51 172.6 0.0 5.3e-51 172.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.14 gi|219852932|ref|YP_002467364.1| - 8.2e-57 191.9 0.0 1.2e-56 191.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|219852932|ref|YP_002467364.1| - 4.2e-30 104.1 1.5 1e-29 102.9 0.7 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|219852932|ref|YP_002467364.1| - 8.2e-21 73.9 0.1 1.2e-19 70.2 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|219852932|ref|YP_002467364.1| - 8.3e-13 48.4 0.0 1.7e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|219852932|ref|YP_002467364.1| - 9.7e-05 21.2 0.0 0.00021 20.1 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|219852932|ref|YP_002467364.1| - 0.00017 21.4 0.0 0.00041 20.2 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|219852932|ref|YP_002467364.1| - 0.011 14.8 0.0 0.038 13.0 0.0 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|219852932|ref|YP_002467364.1| - 0.045 13.0 0.0 0.085 12.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Pribosyltran PF00156.22 gi|219852933|ref|YP_002467365.1| - 4.9e-13 48.9 4.4 1.1e-12 47.7 3.0 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|219852933|ref|YP_002467365.1| - 0.061 12.5 0.3 0.089 11.9 0.2 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF3186 PF11382.3 gi|219852933|ref|YP_002467365.1| - 0.12 11.4 5.4 0.022 13.9 1.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3186) Pribosyl_synth PF14572.1 gi|219852933|ref|YP_002467365.1| - 0.14 11.9 0.3 0.18 11.5 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DUF46 PF01864.12 gi|219852934|ref|YP_002467366.1| - 1.2e-47 162.0 3.1 1.3e-47 161.8 2.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|219852934|ref|YP_002467366.1| - 3.7e-07 30.0 0.2 3.7e-07 30.0 0.1 1.8 2 0 0 2 2 2 1 Cytidylyltransferase family DUF204 PF02659.10 gi|219852934|ref|YP_002467366.1| - 0.33 11.0 5.7 0.55 10.3 0.6 2.7 2 1 0 2 2 2 0 Domain of unknown function DUF Radical_SAM PF04055.16 gi|219852935|ref|YP_002467367.1| - 7.1e-17 62.0 0.3 8.4e-16 58.5 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|219852935|ref|YP_002467367.1| - 7.6e-08 32.5 0.0 2.1e-07 31.1 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219852935|ref|YP_002467367.1| - 4e-07 30.0 0.0 1.1e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain CPSase_L_D3 PF02787.14 gi|219852935|ref|YP_002467367.1| - 0.084 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RimK PF08443.6 gi|219852936|ref|YP_002467368.1| - 8.9e-31 106.8 0.0 1.5e-30 106.1 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|219852936|ref|YP_002467368.1| - 6.7e-10 39.0 0.0 1.3e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|219852936|ref|YP_002467368.1| - 5.1e-09 36.1 0.0 9.9e-09 35.1 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|219852936|ref|YP_002467368.1| - 6.2e-09 35.2 0.0 8.1e-08 31.5 0.0 2.1 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|219852936|ref|YP_002467368.1| - 0.0001 21.2 0.0 0.0067 15.2 0.0 2.1 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|219852936|ref|YP_002467368.1| - 0.0013 17.8 0.0 0.2 10.7 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.1 gi|219852936|ref|YP_002467368.1| - 0.074 11.8 0.0 1 8.0 0.0 2.4 1 1 2 3 3 3 0 YheC/D like ATP-grasp ATP-grasp PF02222.17 gi|219852936|ref|YP_002467368.1| - 0.13 11.6 0.0 0.26 10.6 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain TTL PF03133.10 gi|219852936|ref|YP_002467368.1| - 0.14 11.0 0.0 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family UTRA PF07702.8 gi|219852937|ref|YP_002467369.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 UTRA domain DUF2114 PF09887.4 gi|219852938|ref|YP_002467370.1| - 1.8e-223 741.7 0.0 2.1e-223 741.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) TarH PF02203.10 gi|219852939|ref|YP_002467371.1| - 2 8.2 5.2 0.33 10.7 0.7 1.8 2 0 0 2 2 2 0 Tar ligand binding domain homologue DUF2448 PF10476.4 gi|219852939|ref|YP_002467371.1| - 4.9 6.6 8.2 0.28 10.6 0.8 2.2 1 1 0 2 2 2 0 Protein of unknown function C-terminus (DUF2448) TFIIA PF03153.8 gi|219852939|ref|YP_002467371.1| - 6.3 6.5 15.1 7 6.4 10.5 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit PKD PF00801.15 gi|219852940|ref|YP_002467372.1| - 8e-52 172.8 32.6 2.1e-14 52.9 4.2 4.9 4 0 0 4 4 4 4 PKD domain Beta_helix PF13229.1 gi|219852940|ref|YP_002467372.1| - 1.7e-09 37.6 15.4 1.6e-08 34.4 5.2 3.3 1 1 2 3 3 3 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|219852940|ref|YP_002467372.1| - 4.8e-07 30.1 19.8 7.9e-07 29.4 10.6 2.9 2 1 0 2 2 2 1 Pectate lyase superfamily protein EF-hand_1 PF00036.27 gi|219852940|ref|YP_002467372.1| - 0.00026 20.0 4.8 0.046 13.0 0.5 2.5 2 0 0 2 2 2 2 EF hand EF-hand_8 PF13833.1 gi|219852940|ref|YP_002467372.1| - 0.0056 16.2 5.3 0.13 11.9 0.7 2.4 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_6 PF13405.1 gi|219852940|ref|YP_002467372.1| - 0.0059 16.3 2.6 0.22 11.5 0.3 2.7 2 0 0 2 2 2 1 EF-hand domain EF-hand_5 PF13202.1 gi|219852940|ref|YP_002467372.1| - 0.032 13.5 7.8 0.16 11.3 0.7 2.6 2 0 0 2 2 2 0 EF hand EF-hand_7 PF13499.1 gi|219852940|ref|YP_002467372.1| - 0.34 11.0 1.9 1.6 8.9 1.3 2.1 1 1 0 1 1 1 0 EF-hand domain pair Pentapeptide_4 PF13599.1 gi|219852940|ref|YP_002467372.1| - 0.36 10.6 6.9 0.04 13.7 0.7 2.4 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) Ig_2 PF13895.1 gi|219852940|ref|YP_002467372.1| - 9.5 6.4 8.5 6.2 7.0 0.3 4.3 5 0 0 5 5 5 0 Immunoglobulin domain NHL PF01436.16 gi|219852941|ref|YP_002467373.1| - 2.4e-55 181.8 8.6 2.1e-10 40.0 0.1 6.7 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.6 gi|219852941|ref|YP_002467373.1| - 9.3e-20 70.1 19.8 0.00034 20.3 0.2 7.0 6 0 0 6 6 6 5 Beta-propeller repeat SGL PF08450.7 gi|219852941|ref|YP_002467373.1| - 5.4e-19 68.5 5.4 0.0012 18.3 0.0 6.1 1 1 5 6 6 6 5 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|219852941|ref|YP_002467373.1| - 4.4e-05 23.3 1.3 1.2 9.1 0.0 4.1 5 0 0 5 5 5 2 Arylesterase SdiA-regulated PF06977.6 gi|219852941|ref|YP_002467373.1| - 0.0016 17.4 1.6 33 3.2 0.0 4.8 4 1 0 5 5 5 0 SdiA-regulated EF-hand_6 PF13405.1 gi|219852941|ref|YP_002467373.1| - 0.043 13.6 2.8 4.4 7.4 0.1 2.7 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|219852941|ref|YP_002467373.1| - 0.27 10.6 10.6 1.1 8.7 0.3 3.0 3 0 0 3 3 3 0 EF hand EF-hand_8 PF13833.1 gi|219852941|ref|YP_002467373.1| - 6.1 6.5 5.4 20 4.9 0.3 2.4 2 0 0 2 2 2 0 EF-hand domain pair tRNA-synt_1c PF00749.16 gi|219852943|ref|YP_002467375.1| - 9.1e-75 251.2 0.0 1.2e-74 250.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|219852943|ref|YP_002467375.1| - 1.2e-21 77.1 0.0 2.2e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1d PF00750.14 gi|219852943|ref|YP_002467375.1| - 0.012 14.4 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|219852943|ref|YP_002467375.1| - 0.058 12.0 0.0 1.8 7.1 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) OHCU_decarbox PF09349.5 gi|219852943|ref|YP_002467375.1| - 0.16 12.2 0.1 0.63 10.3 0.0 1.9 1 1 0 1 1 1 0 OHCU decarboxylase polyprenyl_synt PF00348.12 gi|219852944|ref|YP_002467376.1| - 1e-63 214.6 1.3 1.4e-63 214.1 0.9 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|219852945|ref|YP_002467377.1| - 4.5e-18 65.6 0.5 3.3e-17 62.7 0.3 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|219852945|ref|YP_002467377.1| - 2.6e-08 33.5 3.3 2.8e-08 33.4 0.8 2.2 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|219852945|ref|YP_002467377.1| - 2.8e-08 33.5 0.4 3.3e-07 30.0 0.2 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_dh PF01070.13 gi|219852946|ref|YP_002467378.1| - 3e-31 108.5 0.0 2.3e-21 76.0 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|219852946|ref|YP_002467378.1| - 2.8e-06 26.4 0.4 0.00039 19.4 0.2 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|219852946|ref|YP_002467378.1| - 0.0029 16.5 0.2 0.0029 16.5 0.2 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase NMO PF03060.10 gi|219852946|ref|YP_002467378.1| - 0.0057 15.8 0.5 0.011 14.9 0.3 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|219852946|ref|YP_002467378.1| - 0.033 13.1 0.0 0.063 12.2 0.0 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase AA_kinase PF00696.23 gi|219852947|ref|YP_002467379.1| - 2.9e-30 105.5 3.2 3.3e-30 105.4 2.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|219852948|ref|YP_002467380.1| - 2.4e-15 56.3 0.1 6.4e-15 54.9 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|219852948|ref|YP_002467380.1| - 4.2e-11 42.8 0.4 4.2e-11 42.8 0.3 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|219852948|ref|YP_002467380.1| - 0.00046 19.3 0.0 0.00094 18.4 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.12 gi|219852949|ref|YP_002467381.1| - 6e-65 218.8 0.0 6.9e-65 218.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|219852949|ref|YP_002467381.1| - 0.0022 17.0 0.0 0.0029 16.6 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|219852950|ref|YP_002467382.1| - 1.1e-39 135.8 0.3 1.9e-19 69.7 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 PHP PF02811.14 gi|219852950|ref|YP_002467382.1| - 0.02 14.7 0.0 0.09 12.5 0.0 1.9 2 1 1 3 3 3 0 PHP domain Avirulence PF03377.8 gi|219852950|ref|YP_002467382.1| - 0.03 13.0 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Enolase_C PF00113.17 gi|219852951|ref|YP_002467383.1| - 4.3e-70 236.0 0.4 5.9e-70 235.5 0.3 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|219852951|ref|YP_002467383.1| - 9.4e-40 135.6 0.2 3e-39 133.9 0.1 1.9 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|219852951|ref|YP_002467383.1| - 0.00015 21.6 0.3 0.00067 19.6 0.1 2.1 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|219852951|ref|YP_002467383.1| - 0.00044 19.2 0.2 0.0011 17.9 0.1 1.6 1 1 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|219852951|ref|YP_002467383.1| - 0.00056 20.3 0.0 0.0017 18.8 0.0 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RNA_pol_Rpb6 PF01192.17 gi|219852952|ref|YP_002467384.1| - 1.7e-18 66.1 0.2 1.9e-18 65.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|219852953|ref|YP_002467385.1| - 1.6e-28 98.4 0.2 1.8e-28 98.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|219852954|ref|YP_002467386.1| - 9.1e-35 119.5 0.6 1e-34 119.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|219852955|ref|YP_002467387.1| - 7.1e-21 74.5 0.0 8.7e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|219852956|ref|YP_002467388.1| - 6.7e-14 52.3 0.1 8.6e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|219852957|ref|YP_002467389.1| - 1.1e-27 96.4 0.0 2.1e-27 95.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|219852957|ref|YP_002467389.1| - 8.5e-11 40.8 0.0 1.5e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|219852957|ref|YP_002467389.1| - 5.7e-06 26.0 10.7 1.8e-05 24.4 4.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219852957|ref|YP_002467389.1| - 3.3e-05 24.1 13.6 7.6e-05 23.0 5.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219852957|ref|YP_002467389.1| - 5.1e-05 23.9 7.6 0.014 16.1 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|219852957|ref|YP_002467389.1| - 0.00026 20.4 3.0 0.00026 20.4 2.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219852957|ref|YP_002467389.1| - 0.00073 19.5 13.1 0.38 10.8 0.0 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219852957|ref|YP_002467389.1| - 0.0094 16.2 12.5 0.0094 16.2 8.7 2.9 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219852957|ref|YP_002467389.1| - 0.034 14.0 22.8 0.034 14.0 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219852957|ref|YP_002467389.1| - 0.64 10.0 21.9 0.57 10.1 2.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219852957|ref|YP_002467389.1| - 0.79 9.6 17.5 0.38 10.6 1.8 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219852957|ref|YP_002467389.1| - 0.85 10.0 12.3 0.21 12.0 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219852957|ref|YP_002467389.1| - 2.1 8.7 21.1 2 8.7 2.6 3.3 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219852957|ref|YP_002467389.1| - 4.9 7.7 27.5 0.27 11.6 3.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_S11 PF00411.14 gi|219852958|ref|YP_002467390.1| - 3.4e-42 143.0 5.1 8.3e-42 141.8 3.5 1.5 1 1 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|219852959|ref|YP_002467391.1| - 4.3e-14 51.6 0.1 9e-14 50.6 0.1 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|219852959|ref|YP_002467391.1| - 1.2e-05 25.6 0.7 1.2e-05 25.6 0.5 1.7 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Hairy_orange PF07527.8 gi|219852959|ref|YP_002467391.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Hairy Orange Ribosomal_S13 PF00416.17 gi|219852960|ref|YP_002467392.1| - 1.8e-30 105.5 0.5 2.2e-30 105.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 DS PF01916.12 gi|219852961|ref|YP_002467393.1| - 9.3e-61 205.5 0.0 1.1e-60 205.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase PrpR_N PF06506.6 gi|219852961|ref|YP_002467393.1| - 0.095 12.0 0.2 2.6 7.4 0.1 2.2 2 0 0 2 2 2 0 Propionate catabolism activator Arch_flagellin PF01917.11 gi|219852963|ref|YP_002467395.1| - 2e-29 102.5 8.2 2.4e-29 102.3 5.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Big_5 PF13205.1 gi|219852963|ref|YP_002467395.1| - 0.045 14.3 1.9 0.094 13.3 1.3 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain Arch_flagellin PF01917.11 gi|219852964|ref|YP_002467396.1| - 2.7e-29 102.1 11.7 3.1e-29 101.9 8.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|219852965|ref|YP_002467397.1| - 7e-18 64.9 0.4 8.6e-18 64.6 0.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|219852966|ref|YP_002467398.1| - 5.5e-27 94.6 10.4 6.6e-27 94.3 7.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|219852967|ref|YP_002467399.1| - 9.7e-30 103.6 8.7 1.1e-29 103.3 6.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Big_5 PF13205.1 gi|219852967|ref|YP_002467399.1| - 0.058 13.9 2.1 0.13 12.8 1.5 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain Arch_flagellin PF01917.11 gi|219852968|ref|YP_002467400.1| - 3.1e-18 66.0 3.5 1.2e-17 64.1 2.4 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin Exonuc_VIII PF06630.6 gi|219852968|ref|YP_002467400.1| - 0.04 13.2 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Enterobacterial exodeoxyribonuclease VIII Arch_flagellin PF01917.11 gi|219852969|ref|YP_002467401.1| - 1.2e-28 100.0 12.2 1.4e-28 99.8 8.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|219852970|ref|YP_002467402.1| - 1e-26 93.7 9.8 1.2e-26 93.5 6.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin ALS_ss_C PF10369.4 gi|219852971|ref|YP_002467403.1| - 2.6e-31 107.1 1.5 2.8e-31 107.0 0.2 1.6 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|219852971|ref|YP_002467403.1| - 2.1e-21 75.4 0.5 1.2e-20 73.0 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|219852971|ref|YP_002467403.1| - 9.8e-15 53.6 0.6 8.7e-14 50.6 0.1 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|219852971|ref|YP_002467403.1| - 1.1e-05 25.6 0.1 2.2e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.13 gi|219852971|ref|YP_002467403.1| - 0.054 13.5 0.1 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 Acylphosphatase HMA PF00403.21 gi|219852971|ref|YP_002467403.1| - 0.25 11.4 1.6 2.7 8.2 0.1 2.3 2 0 0 2 2 2 0 Heavy-metal-associated domain TPP_enzyme_N PF02776.13 gi|219852972|ref|YP_002467404.1| - 2.2e-60 203.0 0.0 1.1e-59 200.7 0.0 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|219852972|ref|YP_002467404.1| - 9.3e-55 184.4 0.1 3e-54 182.7 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|219852972|ref|YP_002467404.1| - 2.5e-49 166.5 0.0 4.4e-49 165.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HMGL-like PF00682.14 gi|219852973|ref|YP_002467405.1| - 1.2e-68 231.3 2.1 2.2e-68 230.4 1.1 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|219852973|ref|YP_002467405.1| - 3.1e-30 104.6 3.2 5.9e-30 103.7 1.8 1.8 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain PdxJ PF03740.8 gi|219852973|ref|YP_002467405.1| - 0.0017 17.5 0.1 0.003 16.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ AP_endonuc_2 PF01261.19 gi|219852973|ref|YP_002467405.1| - 0.046 12.9 0.4 0.11 11.7 0.3 1.7 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel dTDP_sugar_isom PF00908.12 gi|219852974|ref|YP_002467406.1| - 2.2e-12 46.6 0.0 2.8e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|219852974|ref|YP_002467406.1| - 4.4e-09 35.9 0.0 5.2e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|219852974|ref|YP_002467406.1| - 0.00059 19.2 0.1 1 8.9 0.0 2.2 2 0 0 2 2 2 2 Cupin domain Epimerase PF01370.16 gi|219852975|ref|YP_002467407.1| - 1.6e-73 247.0 0.0 2e-73 246.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|219852975|ref|YP_002467407.1| - 1.2e-23 83.5 0.0 9.9e-23 80.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|219852975|ref|YP_002467407.1| - 1.2e-22 80.1 0.0 1.8e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|219852975|ref|YP_002467407.1| - 1.4e-21 76.3 0.0 2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|219852975|ref|YP_002467407.1| - 1.1e-17 63.8 0.0 9.5e-17 60.7 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|219852975|ref|YP_002467407.1| - 6.8e-08 32.7 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|219852975|ref|YP_002467407.1| - 7.4e-07 29.2 0.0 3.2e-06 27.1 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|219852975|ref|YP_002467407.1| - 0.012 15.9 0.0 0.03 14.6 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|219852975|ref|YP_002467407.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|219852975|ref|YP_002467407.1| - 0.043 13.7 0.0 0.25 11.2 0.0 2.2 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.8 gi|219852975|ref|YP_002467407.1| - 0.11 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family RmlD_sub_bind PF04321.12 gi|219852976|ref|YP_002467408.1| - 1.3e-75 254.0 0.0 1.5e-75 253.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|219852976|ref|YP_002467408.1| - 1.2e-15 57.6 0.0 1.8e-15 57.0 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|219852976|ref|YP_002467408.1| - 3.7e-07 29.3 0.0 2.6e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|219852976|ref|YP_002467408.1| - 0.00023 20.1 0.4 0.00043 19.2 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein NmrA PF05368.8 gi|219852976|ref|YP_002467408.1| - 0.12 11.5 0.3 8.4 5.5 0.1 2.2 1 1 1 2 2 2 0 NmrA-like family NTP_transferase PF00483.18 gi|219852977|ref|YP_002467409.1| - 9.1e-52 175.8 0.0 1e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|219852977|ref|YP_002467409.1| - 1.6e-12 47.8 0.0 2e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|219852977|ref|YP_002467409.1| - 0.048 13.2 0.0 0.069 12.7 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase NAD_binding_3 PF03447.11 gi|219852978|ref|YP_002467410.1| - 1e-07 32.3 0.1 2.8e-07 30.9 0.0 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|219852978|ref|YP_002467410.1| - 2.1e-06 28.0 0.0 6e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|219852978|ref|YP_002467410.1| - 0.00072 19.4 0.6 0.0021 17.9 0.1 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus SAF PF08666.7 gi|219852978|ref|YP_002467410.1| - 0.0033 17.7 0.2 0.015 15.6 0.1 2.2 1 1 0 1 1 1 1 SAF domain UDPG_MGDP_dh_N PF03721.9 gi|219852978|ref|YP_002467410.1| - 0.051 12.9 0.0 6.5 6.0 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Gp_dh_N PF00044.19 gi|219852978|ref|YP_002467410.1| - 0.17 11.8 1.0 6.8 6.6 0.1 2.3 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.21 gi|219852979|ref|YP_002467411.1| - 2.2e-18 66.5 0.0 2.9e-18 66.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|219852979|ref|YP_002467411.1| - 0.0002 21.2 0.0 0.00027 20.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Virul_fac_BrkB PF03631.10 gi|219852979|ref|YP_002467411.1| - 0.066 12.5 5.6 0.1 11.9 3.9 1.2 1 0 0 1 1 1 0 Virulence factor BrkB PA PF02225.17 gi|219852979|ref|YP_002467411.1| - 0.09 12.4 0.1 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 PA domain DUF308 PF03729.8 gi|219852979|ref|YP_002467411.1| - 0.97 9.4 9.8 1.8 8.5 6.8 1.5 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) Peptidase_M42 PF05343.9 gi|219852980|ref|YP_002467412.1| - 2.7e-104 348.0 0.8 3.1e-104 347.8 0.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|219852980|ref|YP_002467412.1| - 5e-15 55.5 0.6 6.4e-15 55.1 0.1 1.6 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|219852980|ref|YP_002467412.1| - 0.00026 19.6 0.0 0.004 15.7 0.0 2.0 1 1 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|219852980|ref|YP_002467412.1| - 0.0052 16.5 0.0 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Aminotran_1_2 PF00155.16 gi|219852981|ref|YP_002467413.1| - 7.2e-57 192.9 0.0 8.1e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|219852981|ref|YP_002467413.1| - 1.5e-08 33.7 0.0 2e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|219852981|ref|YP_002467413.1| - 0.00019 20.6 0.1 0.00026 20.2 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|219852981|ref|YP_002467413.1| - 0.0011 17.3 0.0 0.0016 16.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|219852981|ref|YP_002467413.1| - 0.0033 16.5 0.2 0.0051 15.9 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DAO PF01266.19 gi|219852981|ref|YP_002467413.1| - 0.015 14.2 0.2 0.2 10.5 0.0 2.5 2 1 1 3 3 3 0 FAD dependent oxidoreductase OKR_DC_1 PF01276.15 gi|219852981|ref|YP_002467413.1| - 0.13 10.7 0.0 0.2 10.1 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SIS PF01380.17 gi|219852982|ref|YP_002467414.1| - 1.6e-15 56.8 0.0 2.9e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|219852982|ref|YP_002467414.1| - 2.7e-07 30.3 1.0 0.0081 15.8 0.0 2.7 2 1 1 3 3 3 2 SIS domain S-AdoMet_synt_N PF00438.15 gi|219852982|ref|YP_002467414.1| - 0.27 11.4 1.3 2.3 8.4 0.8 2.4 1 1 0 1 1 1 0 S-adenosylmethionine synthetase, N-terminal domain DUF3784 PF12650.2 gi|219852983|ref|YP_002467415.1| - 1.1e-06 28.4 4.4 1.5e-06 28.0 3.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) VirB3 PF05101.8 gi|219852983|ref|YP_002467415.1| - 1.5 8.8 5.5 9.2 6.3 0.1 2.2 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF3821 PF12863.2 gi|219852984|ref|YP_002467416.1| - 1.2e-54 185.2 4.3 1.2e-54 185.2 3.0 4.1 4 2 1 5 5 5 2 Domain of unknown function (DUF3821) DUF1628 PF07790.6 gi|219852986|ref|YP_002467418.1| - 2.7e-19 69.6 8.5 4.7e-19 68.9 5.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Na_H_antiport_2 PF13726.1 gi|219852986|ref|YP_002467418.1| - 1.5 8.7 8.6 0.79 9.6 4.1 1.8 1 1 1 2 2 2 0 Na+-H+ antiporter family PDGLE PF13190.1 gi|219852986|ref|YP_002467418.1| - 8.4 6.1 6.9 17 5.1 0.8 2.4 2 1 0 2 2 2 0 PDGLE domain DUF2568 PF10823.3 gi|219852987|ref|YP_002467419.1| - 0.19 11.9 2.2 0.27 11.5 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2568) DUF1628 PF07790.6 gi|219852988|ref|YP_002467420.1| - 4.4e-16 59.4 2.9 4.4e-16 59.4 2.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Lipoprotein_15 PF03640.10 gi|219852989|ref|YP_002467421.1| - 7.3e-20 70.1 5.0 2.6e-09 36.3 0.2 4.4 4 0 0 4 4 4 4 Secreted repeat of unknown function Lip_A_acyltrans PF03279.8 gi|219852989|ref|YP_002467421.1| - 0.21 10.4 1.6 0.35 9.6 1.1 1.3 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase FMN_red PF03358.10 gi|219852990|ref|YP_002467422.1| - 5.1e-18 65.0 0.0 1.4e-17 63.6 0.0 1.7 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219852990|ref|YP_002467422.1| - 0.0011 18.5 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold PspC PF04024.7 gi|219852991|ref|YP_002467423.1| - 1.3e-24 85.3 0.2 1.4e-24 85.2 0.2 1.0 1 0 0 1 1 1 1 PspC domain Closter_coat PF01785.12 gi|219852992|ref|YP_002467424.1| - 0.0078 15.2 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Closterovirus coat protein RHH_1 PF01402.16 gi|219852994|ref|YP_002467426.1| - 0.00098 18.9 2.3 0.017 15.0 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ALIX_LYPXL_bnd PF13949.1 gi|219852994|ref|YP_002467426.1| - 0.0039 16.1 0.6 0.0043 16.0 0.4 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV HTH_20 PF12840.2 gi|219852995|ref|YP_002467427.1| - 0.0012 18.6 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|219852995|ref|YP_002467427.1| - 0.0013 18.1 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|219852995|ref|YP_002467427.1| - 0.0015 17.8 0.1 0.002 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|219852995|ref|YP_002467427.1| - 0.019 15.1 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|219852995|ref|YP_002467427.1| - 0.022 14.4 0.1 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.4 gi|219852995|ref|YP_002467427.1| - 0.027 14.3 0.0 0.035 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_43 PF09904.4 gi|219852995|ref|YP_002467427.1| - 0.057 13.2 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_27 PF13463.1 gi|219852995|ref|YP_002467427.1| - 0.058 13.7 0.0 0.067 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|219852995|ref|YP_002467427.1| - 0.058 13.0 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_9 PF08221.6 gi|219852995|ref|YP_002467427.1| - 0.062 13.1 0.0 0.088 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain YbjQ_1 PF01906.12 gi|219852996|ref|YP_002467428.1| - 2e-35 121.3 0.1 2.3e-35 121.1 0.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|219852996|ref|YP_002467428.1| - 0.003 17.4 0.1 0.0055 16.5 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) HD PF01966.17 gi|219852997|ref|YP_002467429.1| - 1.4e-19 70.2 0.2 2.1e-19 69.7 0.2 1.2 1 0 0 1 1 1 1 HD domain HD_4 PF13328.1 gi|219852997|ref|YP_002467429.1| - 0.02 14.6 0.1 0.052 13.2 0.1 1.8 1 1 0 1 1 1 0 HD domain DUF2312 PF10073.4 gi|219852997|ref|YP_002467429.1| - 0.056 12.8 0.0 15 5.0 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Prim-Pol PF09250.6 gi|219852998|ref|YP_002467430.1| - 0.069 13.1 0.0 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal FUSC_2 PF13515.1 gi|219852999|ref|YP_002467431.1| - 3.1e-14 52.9 7.4 3.5e-14 52.8 4.8 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein-like DUF939 PF06081.6 gi|219852999|ref|YP_002467431.1| - 1.1e-09 38.2 1.8 1.5e-09 37.8 1.1 1.3 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF939) FUSC PF04632.7 gi|219852999|ref|YP_002467431.1| - 0.00093 17.7 7.2 0.0046 15.4 5.0 1.8 1 1 0 1 1 1 1 Fusaric acid resistance protein family YfhO PF09586.5 gi|219852999|ref|YP_002467431.1| - 0.041 11.9 2.4 0.054 11.5 1.7 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO TauE PF01925.14 gi|219853000|ref|YP_002467432.1| - 0.028 13.8 6.7 0.033 13.6 4.6 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF3487 PF11990.3 gi|219853000|ref|YP_002467432.1| - 0.075 12.4 3.0 0.11 11.9 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) SBF PF01758.11 gi|219853000|ref|YP_002467432.1| - 0.085 12.2 6.6 0.023 14.1 1.9 2.0 1 1 1 2 2 2 0 Sodium Bile acid symporter family LrgA PF03788.9 gi|219853000|ref|YP_002467432.1| - 0.12 12.0 7.9 18 5.0 5.5 2.3 1 1 0 1 1 1 0 LrgA family DUF3784 PF12650.2 gi|219853000|ref|YP_002467432.1| - 0.13 12.2 4.5 0.21 11.5 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF3951 PF13131.1 gi|219853000|ref|YP_002467432.1| - 0.58 9.9 0.1 0.58 9.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3951) DUF4381 PF14316.1 gi|219853000|ref|YP_002467432.1| - 2.3 8.2 4.1 1.3 9.1 1.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) DUF805 PF05656.9 gi|219853000|ref|YP_002467432.1| - 3.4 7.5 15.8 8.1 6.3 11.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF4199 PF13858.1 gi|219853000|ref|YP_002467432.1| - 5.8 6.8 12.4 3.3 7.6 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) HTH_45 PF14947.1 gi|219853001|ref|YP_002467433.1| - 2.7e-09 36.6 0.0 3.1e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF308 PF03729.8 gi|219853002|ref|YP_002467434.1| - 0.41 10.6 15.1 0.38 10.7 4.4 2.5 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) Trehalose_recp PF06151.8 gi|219853002|ref|YP_002467434.1| - 4.8 5.4 12.3 0.97 7.7 0.2 2.9 1 1 1 3 3 3 0 Trehalose receptor IncA PF04156.9 gi|219853002|ref|YP_002467434.1| - 8.2 5.9 10.3 16 5.0 0.1 2.3 2 0 0 2 2 2 0 IncA protein HATPase_c PF02518.21 gi|219853003|ref|YP_002467435.1| - 0.00013 21.6 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|219853003|ref|YP_002467435.1| - 0.035 14.1 0.0 0.092 12.7 0.0 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain DUF1724 PF08350.5 gi|219853004|ref|YP_002467436.1| - 1.5e-22 78.8 0.9 2.9e-22 77.9 0.4 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HxlR PF01638.12 gi|219853004|ref|YP_002467436.1| - 0.094 12.3 0.0 0.21 11.2 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HemN_C PF06969.11 gi|219853004|ref|YP_002467436.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain UbiA PF01040.13 gi|219853005|ref|YP_002467437.1| - 2e-19 69.7 16.6 2.9e-19 69.3 11.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Calcyon PF06387.6 gi|219853005|ref|YP_002467437.1| - 0.28 10.5 0.7 0.75 9.1 0.1 1.8 2 0 0 2 2 2 0 D1 dopamine receptor-interacting protein (calcyon) zf-LITAF-like PF10601.4 gi|219853005|ref|YP_002467437.1| - 5.2 7.0 6.5 9.6 6.1 0.1 3.3 3 1 0 3 3 3 0 LITAF-like zinc ribbon domain MFS_1 PF07690.11 gi|219853007|ref|YP_002467439.1| - 6e-41 140.3 85.4 6.7e-33 113.8 31.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|219853007|ref|YP_002467439.1| - 0.00035 18.8 26.4 0.02 13.0 8.1 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|219853007|ref|YP_002467439.1| - 0.12 10.9 34.3 0.27 9.7 4.0 2.4 2 0 0 2 2 2 0 Sugar (and other) transporter HTH_27 PF13463.1 gi|219853008|ref|YP_002467440.1| - 1.7e-08 34.6 0.2 6.6e-08 32.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|219853008|ref|YP_002467440.1| - 5.4e-08 32.3 0.1 1.3e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|219853008|ref|YP_002467440.1| - 7.7e-07 28.7 0.0 1.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|219853008|ref|YP_002467440.1| - 0.00019 21.2 0.0 0.00066 19.5 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|219853008|ref|YP_002467440.1| - 0.00063 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|219853008|ref|YP_002467440.1| - 0.0039 17.2 0.0 0.0066 16.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|219853008|ref|YP_002467440.1| - 0.0084 15.4 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|219853008|ref|YP_002467440.1| - 0.0085 15.7 0.1 0.022 14.4 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|219853008|ref|YP_002467440.1| - 0.011 15.2 0.0 0.026 14.1 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|219853008|ref|YP_002467440.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S25 PF03297.10 gi|219853008|ref|YP_002467440.1| - 0.058 13.4 0.5 0.22 11.5 0.0 2.0 1 1 1 2 2 2 0 S25 ribosomal protein GntR PF00392.16 gi|219853008|ref|YP_002467440.1| - 0.28 10.6 2.0 0.61 9.5 0.1 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF1348 PF07080.6 gi|219853009|ref|YP_002467441.1| - 9.7e-77 255.6 6.3 1.1e-76 255.4 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1348) SnoaL_2 PF12680.2 gi|219853009|ref|YP_002467441.1| - 0.00069 19.9 0.5 0.00096 19.5 0.4 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|219853009|ref|YP_002467441.1| - 0.03 14.5 0.1 0.058 13.6 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4440) Helicase_C PF00271.26 gi|219853011|ref|YP_002467443.1| - 9.3e-24 83.0 0.2 1.6e-19 69.4 0.1 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain RQC PF09382.5 gi|219853011|ref|YP_002467443.1| - 2.3e-23 81.9 0.0 1.7e-22 79.1 0.0 2.2 2 0 0 2 2 2 1 RQC domain HRDC PF00570.18 gi|219853011|ref|YP_002467443.1| - 5e-22 77.3 0.0 1.1e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 HRDC domain DEAD PF00270.24 gi|219853011|ref|YP_002467443.1| - 3.2e-18 65.7 0.0 1.1e-17 64.0 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|219853011|ref|YP_002467443.1| - 0.0012 18.6 0.0 0.02 14.7 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_Sgs1 PF11408.3 gi|219853011|ref|YP_002467443.1| - 0.0025 17.5 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 Sgs1 RecQ helicase GARS_N PF02844.10 gi|219853011|ref|YP_002467443.1| - 0.062 13.7 0.0 0.29 11.6 0.0 2.1 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain HHH PF00633.18 gi|219853011|ref|YP_002467443.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif CxxCxxCC PF03692.10 gi|219853013|ref|YP_002467445.1| - 0.017 15.5 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Putative zinc- or iron-chelating domain ABM PF03992.11 gi|219853014|ref|YP_002467446.1| - 1.5e-18 66.5 0.4 2e-18 66.2 0.3 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF718 PF05336.8 gi|219853014|ref|YP_002467446.1| - 0.00094 18.9 0.4 0.0012 18.6 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF718) DSHCT PF08148.7 gi|219853014|ref|YP_002467446.1| - 0.0066 15.7 0.1 0.0083 15.3 0.0 1.1 1 0 0 1 1 1 1 DSHCT (NUC185) domain GvpG PF05120.7 gi|219853014|ref|YP_002467446.1| - 0.02 14.6 0.2 0.037 13.8 0.1 1.6 1 1 1 2 2 2 0 Gas vesicle protein G TmoB PF06234.7 gi|219853014|ref|YP_002467446.1| - 0.038 13.8 0.2 0.072 12.9 0.1 1.5 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) Orn_Arg_deC_N PF02784.11 gi|219853015|ref|YP_002467447.1| - 6.4e-51 172.9 0.0 8.8e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|219853015|ref|YP_002467447.1| - 4.2e-19 68.3 0.0 6.7e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|219853015|ref|YP_002467447.1| - 7e-07 29.0 0.0 9.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Glycos_transf_2 PF00535.21 gi|219853016|ref|YP_002467448.1| - 5.4e-19 68.4 0.0 7e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|219853016|ref|YP_002467448.1| - 7.9e-08 31.7 0.0 1.5e-07 30.8 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|219853016|ref|YP_002467448.1| - 5.3e-06 26.4 0.0 1.6e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF1600 PF07667.6 gi|219853017|ref|YP_002467449.1| - 5.6 7.0 7.4 0.52 10.4 0.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1600) Radical_SAM PF04055.16 gi|219853018|ref|YP_002467450.1| - 7.1e-13 49.0 0.0 1.3e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|219853018|ref|YP_002467450.1| - 0.0013 19.0 1.5 0.0038 17.5 1.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|219853018|ref|YP_002467450.1| - 0.0022 18.1 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219853018|ref|YP_002467450.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Methyltransf_11 PF08241.7 gi|219853019|ref|YP_002467451.1| - 1.4e-18 67.1 0.0 2.2e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219853019|ref|YP_002467451.1| - 6.9e-13 48.4 0.0 9.2e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219853019|ref|YP_002467451.1| - 4.7e-10 38.9 0.0 1.1e-09 37.8 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|219853019|ref|YP_002467451.1| - 1.1e-08 35.5 0.0 5.1e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219853019|ref|YP_002467451.1| - 3.8e-08 33.2 0.0 5.5e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219853019|ref|YP_002467451.1| - 5.5e-08 33.1 0.0 8.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219853019|ref|YP_002467451.1| - 6.6e-08 32.8 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|219853019|ref|YP_002467451.1| - 1.3e-07 31.0 0.0 1.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|219853019|ref|YP_002467451.1| - 2.5e-06 27.4 0.3 4.3e-06 26.7 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|219853019|ref|YP_002467451.1| - 0.0079 15.7 0.0 0.017 14.6 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF2064 PF09837.4 gi|219853020|ref|YP_002467452.1| - 5.2e-29 100.3 0.0 7.7e-29 99.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|219853020|ref|YP_002467452.1| - 1.6e-06 27.2 0.0 2.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like HATPase_c PF02518.21 gi|219853021|ref|YP_002467453.1| - 1.5e-11 44.0 0.0 4e-11 42.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acetyltransf_7 PF13508.1 gi|219853021|ref|YP_002467453.1| - 1e-10 41.6 0.1 1.9e-10 40.7 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PAS_9 PF13426.1 gi|219853021|ref|YP_002467453.1| - 2.2e-10 40.8 0.0 7.6e-10 39.1 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|219853021|ref|YP_002467453.1| - 0.001 19.0 0.0 0.0024 17.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold Acetyltransf_1 PF00583.19 gi|219853021|ref|YP_002467453.1| - 0.0084 16.1 0.2 0.017 15.1 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family MASE1 PF05231.9 gi|219853021|ref|YP_002467453.1| - 0.013 14.5 5.2 0.019 13.9 3.6 1.3 1 0 0 1 1 1 0 MASE1 HATPase_c_2 PF13581.1 gi|219853021|ref|YP_002467453.1| - 0.016 15.0 0.5 0.096 12.4 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|219853021|ref|YP_002467453.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acetyltransf_4 PF13420.1 gi|219853022|ref|YP_002467454.1| - 3e-20 72.7 0.0 3.5e-20 72.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|219853022|ref|YP_002467454.1| - 6.3e-13 48.5 0.0 9.3e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|219853022|ref|YP_002467454.1| - 1.3e-08 35.0 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|219853022|ref|YP_002467454.1| - 4.2e-07 30.0 0.0 6.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|219853022|ref|YP_002467454.1| - 1.7e-05 24.9 0.0 2.1e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|219853022|ref|YP_002467454.1| - 0.00026 20.9 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF998 PF06197.8 gi|219853023|ref|YP_002467455.1| - 1.1e-22 80.1 19.3 1.5e-22 79.7 13.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF981 PF06168.6 gi|219853023|ref|YP_002467455.1| - 0.0046 16.7 6.1 0.0046 16.7 4.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF981) Peripla_BP_6 PF13458.1 gi|219853024|ref|YP_002467456.1| - 1.4e-30 106.8 0.2 1.7e-30 106.5 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|219853024|ref|YP_002467456.1| - 2.6e-24 85.6 0.1 3.1e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|219853024|ref|YP_002467456.1| - 6.2e-08 31.7 0.0 1e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|219853024|ref|YP_002467456.1| - 0.00037 19.1 0.1 0.0005 18.7 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein SnoaL_2 PF12680.2 gi|219853026|ref|YP_002467458.1| - 0.00013 22.3 0.1 0.00015 22.0 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|219853026|ref|YP_002467458.1| - 0.066 13.2 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain LTD PF00932.14 gi|219853027|ref|YP_002467459.1| - 2.2e-20 72.8 0.8 8.4e-20 70.9 0.5 2.0 1 0 0 1 1 1 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|219853027|ref|YP_002467459.1| - 8.2e-09 35.3 3.3 1e-06 28.5 1.4 3.2 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219853027|ref|YP_002467459.1| - 0.00014 21.5 0.1 0.00065 19.3 0.0 2.1 1 1 1 2 2 2 1 Beta-lactamase superfamily domain EF-hand_1 PF00036.27 gi|219853027|ref|YP_002467459.1| - 0.069 12.4 0.2 0.2 11.0 0.1 1.8 1 0 0 1 1 1 0 EF hand CheB_methylest PF01339.12 gi|219853028|ref|YP_002467460.1| - 7e-61 204.8 0.0 1.4e-60 203.8 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.13 gi|219853028|ref|YP_002467460.1| - 7e-55 185.3 0.0 1.1e-54 184.6 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain PAS_10 PF13596.1 gi|219853028|ref|YP_002467460.1| - 2.7e-28 98.3 0.0 7.3e-25 87.2 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219853028|ref|YP_002467460.1| - 1.4e-16 60.4 0.6 1e-06 28.7 0.0 3.4 3 0 0 3 3 3 2 PAS fold CheR_N PF03705.10 gi|219853028|ref|YP_002467460.1| - 5.5e-14 51.2 0.1 1.2e-13 50.1 0.1 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_9 PF13426.1 gi|219853028|ref|YP_002467460.1| - 4.9e-11 42.9 0.0 0.00021 21.6 0.0 3.5 4 0 0 4 4 2 2 PAS domain PAS PF00989.19 gi|219853028|ref|YP_002467460.1| - 6.6e-09 35.5 0.3 1.1e-05 25.1 0.0 3.8 3 1 0 3 3 3 1 PAS fold IncA PF04156.9 gi|219853028|ref|YP_002467460.1| - 3.5e-06 26.7 10.2 7.8e-06 25.6 7.1 1.5 1 0 0 1 1 1 1 IncA protein Fez1 PF06818.10 gi|219853028|ref|YP_002467460.1| - 1.2e-05 25.4 9.5 2.6e-05 24.3 6.6 1.5 1 0 0 1 1 1 1 Fez1 PAS_8 PF13188.1 gi|219853028|ref|YP_002467460.1| - 7.6e-05 22.4 0.0 0.005 16.6 0.0 3.0 2 0 0 2 2 2 1 PAS domain Exonuc_VII_L PF02601.10 gi|219853028|ref|YP_002467460.1| - 0.0012 18.0 1.1 0.0018 17.5 0.8 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit OmpH PF03938.9 gi|219853028|ref|YP_002467460.1| - 0.0026 17.6 6.7 0.0051 16.7 4.6 1.4 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Atg14 PF10186.4 gi|219853028|ref|YP_002467460.1| - 0.0077 15.2 5.4 0.012 14.5 3.7 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 PAS_7 PF12860.2 gi|219853028|ref|YP_002467460.1| - 0.011 15.7 5.4 1.9 8.4 0.1 4.5 5 1 0 5 5 3 0 PAS fold Phage_GP20 PF06810.6 gi|219853028|ref|YP_002467460.1| - 0.012 15.0 6.7 0.021 14.2 4.7 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 ATG16 PF08614.6 gi|219853028|ref|YP_002467460.1| - 0.013 15.3 20.2 0.021 14.6 14.0 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Spc7 PF08317.6 gi|219853028|ref|YP_002467460.1| - 0.013 14.1 13.8 0.022 13.4 9.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|219853028|ref|YP_002467460.1| - 0.026 14.2 14.9 0.058 13.1 10.3 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein WEMBL PF05701.6 gi|219853028|ref|YP_002467460.1| - 0.029 12.8 13.3 0.049 12.0 9.3 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Golgin_A5 PF09787.4 gi|219853028|ref|YP_002467460.1| - 0.032 12.7 12.8 0.049 12.1 8.9 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Mnd1 PF03962.10 gi|219853028|ref|YP_002467460.1| - 0.043 13.4 11.0 0.085 12.5 7.6 1.4 1 0 0 1 1 1 0 Mnd1 family IFT57 PF10498.4 gi|219853028|ref|YP_002467460.1| - 0.078 11.7 12.3 0.12 11.0 8.5 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 AAA_13 PF13166.1 gi|219853028|ref|YP_002467460.1| - 0.095 11.1 8.2 0.14 10.6 5.7 1.1 1 0 0 1 1 1 0 AAA domain Lebercilin PF15619.1 gi|219853028|ref|YP_002467460.1| - 0.14 11.5 18.7 0.27 10.6 13.0 1.4 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease CENP-F_leu_zip PF10473.4 gi|219853028|ref|YP_002467460.1| - 0.2 11.4 20.0 0.46 10.3 13.8 1.5 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.3 gi|219853028|ref|YP_002467460.1| - 0.21 11.4 14.9 0.42 10.5 10.3 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF3584 PF12128.3 gi|219853028|ref|YP_002467460.1| - 0.24 8.7 12.0 0.34 8.1 8.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Borrelia_P83 PF05262.6 gi|219853028|ref|YP_002467460.1| - 0.26 9.4 7.3 0.39 8.9 5.0 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein DUF3552 PF12072.3 gi|219853028|ref|YP_002467460.1| - 0.33 10.1 15.5 0.77 8.9 10.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Laminin_II PF06009.7 gi|219853028|ref|YP_002467460.1| - 0.37 10.5 9.5 0.74 9.5 6.6 1.4 1 0 0 1 1 1 0 Laminin Domain II GAS PF13851.1 gi|219853028|ref|YP_002467460.1| - 0.44 9.6 15.2 0.76 8.9 10.6 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF812 PF05667.6 gi|219853028|ref|YP_002467460.1| - 0.58 8.5 9.9 0.92 7.9 6.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Sec8_exocyst PF04048.9 gi|219853028|ref|YP_002467460.1| - 0.64 9.6 11.0 3 7.4 2.7 2.4 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DivIC PF04977.10 gi|219853028|ref|YP_002467460.1| - 0.82 9.2 10.1 3.8 7.0 0.9 2.6 1 1 1 2 2 2 0 Septum formation initiator V_ATPase_I PF01496.14 gi|219853028|ref|YP_002467460.1| - 0.93 7.2 8.2 0.61 7.8 4.4 1.5 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family UPF0449 PF15136.1 gi|219853028|ref|YP_002467460.1| - 0.93 9.7 13.7 2.2 8.5 2.1 3.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF342 PF03961.8 gi|219853028|ref|YP_002467460.1| - 1.2 7.5 9.6 1.8 6.8 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Macoilin PF09726.4 gi|219853028|ref|YP_002467460.1| - 1.2 7.3 8.2 1.8 6.7 5.7 1.1 1 0 0 1 1 1 0 Transmembrane protein bZIP_1 PF00170.16 gi|219853028|ref|YP_002467460.1| - 1.5 8.8 11.9 17 5.4 5.7 2.6 1 1 1 2 2 2 0 bZIP transcription factor Seryl_tRNA_N PF02403.17 gi|219853028|ref|YP_002467460.1| - 1.6 8.8 13.2 5.9 6.9 9.1 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TBPIP PF07106.8 gi|219853028|ref|YP_002467460.1| - 1.8 8.1 14.5 3.1 7.3 10.1 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prominin PF05478.6 gi|219853028|ref|YP_002467460.1| - 1.9 5.8 6.1 3 5.2 4.2 1.1 1 0 0 1 1 1 0 Prominin DUF948 PF06103.6 gi|219853028|ref|YP_002467460.1| - 2 8.3 6.4 4.7 7.1 4.4 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) UPF0242 PF06785.6 gi|219853028|ref|YP_002467460.1| - 2.1 6.9 8.3 3.3 6.2 5.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) COG2 PF06148.6 gi|219853028|ref|YP_002467460.1| - 2.2 8.1 11.0 2.6 7.9 2.3 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.7 gi|219853028|ref|YP_002467460.1| - 2.4 7.9 6.1 5.2 6.8 4.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|219853028|ref|YP_002467460.1| - 2.7 6.9 15.3 4.1 6.3 10.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Reo_sigmaC PF04582.7 gi|219853028|ref|YP_002467460.1| - 3.6 6.6 6.7 5.9 5.9 4.6 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Bacillus_HBL PF05791.6 gi|219853028|ref|YP_002467460.1| - 3.7 6.8 10.6 2.9 7.2 5.5 1.9 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Syntaxin-6_N PF09177.6 gi|219853028|ref|YP_002467460.1| - 4.8 7.6 14.8 95 3.4 0.0 3.6 2 2 2 4 4 4 0 Syntaxin 6, N-terminal GrpE PF01025.14 gi|219853028|ref|YP_002467460.1| - 5.4 6.5 11.7 2 7.9 6.1 1.7 2 0 0 2 2 1 0 GrpE Fmp27_WPPW PF10359.4 gi|219853028|ref|YP_002467460.1| - 7.8 4.7 10.5 12 4.1 7.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HATPase_c PF02518.21 gi|219853029|ref|YP_002467461.1| - 3.2e-26 91.2 0.0 6e-26 90.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|219853029|ref|YP_002467461.1| - 5e-13 49.0 0.4 1.5e-08 34.6 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|219853029|ref|YP_002467461.1| - 1.7e-12 47.6 0.0 8e-06 26.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|219853029|ref|YP_002467461.1| - 6.3e-12 45.2 0.0 6.5e-09 35.5 0.0 2.6 2 1 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|219853029|ref|YP_002467461.1| - 7.9e-11 41.7 3.0 4.2e-10 39.4 0.0 3.4 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|219853029|ref|YP_002467461.1| - 1e-08 34.7 0.0 2.2e-06 27.3 0.0 3.2 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|219853029|ref|YP_002467461.1| - 0.0013 18.3 0.0 0.0041 16.7 0.0 1.8 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.6 gi|219853029|ref|YP_002467461.1| - 0.0097 15.9 0.0 0.049 13.7 0.0 2.3 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.2 gi|219853029|ref|YP_002467461.1| - 0.01 15.8 2.8 0.19 11.7 0.1 3.7 3 1 0 3 3 3 0 PAS fold HATPase_c_3 PF13589.1 gi|219853029|ref|YP_002467461.1| - 0.029 14.0 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|219853030|ref|YP_002467462.1| - 2.2e-44 150.0 3.4 8.8e-18 64.6 0.0 4.9 5 0 0 5 5 4 4 PAS domain PAS PF00989.19 gi|219853030|ref|YP_002467462.1| - 2.3e-38 130.4 0.1 2.8e-15 56.0 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|219853030|ref|YP_002467462.1| - 4.5e-32 110.3 0.6 5.2e-15 55.4 0.1 5.3 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|219853030|ref|YP_002467462.1| - 2.6e-26 90.5 4.0 9.3e-07 28.4 0.0 5.7 6 0 0 6 6 6 4 PAS domain Response_reg PF00072.19 gi|219853030|ref|YP_002467462.1| - 2.4e-20 72.6 0.0 1.6e-19 69.9 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|219853030|ref|YP_002467462.1| - 3.3e-14 53.6 0.1 1e-13 52.0 0.0 1.8 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|219853030|ref|YP_002467462.1| - 5.9e-14 51.7 0.1 1.4e-13 50.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219853030|ref|YP_002467462.1| - 1.7e-08 34.4 0.1 4.4e-05 23.4 0.0 4.3 3 0 0 3 3 3 1 PAS fold NifZ PF04319.8 gi|219853030|ref|YP_002467462.1| - 0.0031 16.8 0.1 6.3 6.2 0.0 3.7 3 0 0 3 3 3 2 NifZ domain PEP-utilisers_N PF05524.8 gi|219853030|ref|YP_002467462.1| - 0.0041 16.9 4.7 2.8 7.7 0.0 4.5 5 0 0 5 5 5 1 PEP-utilising enzyme, N-terminal HisKA PF00512.20 gi|219853030|ref|YP_002467462.1| - 0.0098 15.8 0.0 0.052 13.5 0.0 2.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain OKR_DC_1_N PF03709.10 gi|219853030|ref|YP_002467462.1| - 0.011 15.7 0.0 0.052 13.6 0.0 2.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF1241 PF06840.6 gi|219853030|ref|YP_002467462.1| - 0.012 14.8 0.2 0.11 11.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1241) PAS_11 PF14598.1 gi|219853030|ref|YP_002467462.1| - 0.022 14.7 0.0 1 9.3 0.0 3.5 4 0 0 4 4 4 0 PAS domain MEKHLA PF08670.6 gi|219853030|ref|YP_002467462.1| - 0.073 12.6 0.0 15 5.1 0.0 2.3 2 0 0 2 2 2 0 MEKHLA domain PAS_9 PF13426.1 gi|219853031|ref|YP_002467463.1| - 1.4e-33 115.3 0.1 3.2e-07 30.6 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.1 gi|219853031|ref|YP_002467463.1| - 2.6e-31 106.4 0.1 6e-07 29.1 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|219853031|ref|YP_002467463.1| - 2.9e-31 107.5 0.0 2.2e-07 30.6 0.0 4.4 4 0 0 4 4 4 4 PAS fold Response_reg PF00072.19 gi|219853031|ref|YP_002467463.1| - 4.7e-19 68.4 0.1 2.4e-18 66.1 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.5 gi|219853031|ref|YP_002467463.1| - 1.5e-15 57.2 0.0 0.0061 16.5 0.0 4.8 4 0 0 4 4 4 3 PAS fold GAF_2 PF13185.1 gi|219853031|ref|YP_002467463.1| - 2.2e-12 47.7 0.0 5.6e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain NifZ PF04319.8 gi|219853031|ref|YP_002467463.1| - 6.5e-05 22.2 0.0 7.4 6.0 0.0 3.8 3 0 0 3 3 3 3 NifZ domain UPF0728 PF15092.1 gi|219853031|ref|YP_002467463.1| - 0.00052 19.8 0.7 28 4.6 0.0 4.4 4 0 0 4 4 4 0 Uncharacterised protein family UPF0728 OKR_DC_1_N PF03709.10 gi|219853031|ref|YP_002467463.1| - 0.01 15.8 0.0 0.045 13.8 0.0 2.0 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF2639 PF11121.3 gi|219853031|ref|YP_002467463.1| - 0.14 11.6 0.3 56 3.3 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2639) UPF0118 PF01594.11 gi|219853032|ref|YP_002467464.1| - 1.2e-32 113.2 49.3 1.4e-32 113.0 34.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 FUSC_2 PF13515.1 gi|219853033|ref|YP_002467465.1| - 4.4e-17 62.2 14.4 4.4e-17 62.2 10.0 2.9 2 1 1 3 3 3 1 Fusaric acid resistance protein-like FUSC PF04632.7 gi|219853033|ref|YP_002467465.1| - 0.4 9.0 40.3 1.2 7.4 9.4 2.3 2 0 0 2 2 2 0 Fusaric acid resistance protein family ABC_tran PF00005.22 gi|219853034|ref|YP_002467466.1| - 9.4e-32 110.1 0.0 2.2e-31 108.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|219853034|ref|YP_002467466.1| - 5.4e-14 52.8 0.2 3.1e-12 47.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|219853034|ref|YP_002467466.1| - 2.6e-05 24.6 0.6 8.3e-05 23.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|219853034|ref|YP_002467466.1| - 0.00016 22.0 0.0 0.0014 19.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|219853034|ref|YP_002467466.1| - 0.00059 19.3 0.1 0.0013 18.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|219853034|ref|YP_002467466.1| - 0.006 16.0 0.1 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|219853034|ref|YP_002467466.1| - 0.017 14.3 0.2 0.59 9.3 0.1 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|219853034|ref|YP_002467466.1| - 0.052 13.4 0.1 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|219853034|ref|YP_002467466.1| - 0.068 13.3 1.5 0.64 10.1 1.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|219853034|ref|YP_002467466.1| - 0.08 12.8 0.0 0.41 10.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|219853034|ref|YP_002467466.1| - 0.083 11.9 0.2 0.5 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|219853034|ref|YP_002467466.1| - 0.1 12.3 0.1 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|219853034|ref|YP_002467466.1| - 0.11 12.7 0.6 0.75 10.0 0.4 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|219853034|ref|YP_002467466.1| - 0.11 11.5 0.0 0.23 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|219853034|ref|YP_002467466.1| - 0.15 10.5 0.2 3.2 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|219853035|ref|YP_002467467.1| - 2.5e-21 75.8 21.9 2.5e-21 75.8 15.2 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219853035|ref|YP_002467467.1| - 4.6e-11 42.3 29.3 2.5e-10 39.9 20.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219853035|ref|YP_002467467.1| - 0.00026 19.9 14.2 0.00026 19.9 9.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.8 gi|219853035|ref|YP_002467467.1| - 0.1 11.7 15.9 0.027 13.7 8.8 1.7 1 1 0 1 1 1 0 CcmB protein TMEM125 PF15109.1 gi|219853036|ref|YP_002467468.1| - 0.0038 17.3 3.0 0.96 9.5 0.1 3.1 2 1 1 3 3 3 2 TMEM125 protein family DUF1697 PF08002.6 gi|219853037|ref|YP_002467469.1| - 7.5e-36 123.1 0.0 9.3e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1697) HxlR PF01638.12 gi|219853038|ref|YP_002467470.1| - 3.5e-31 106.6 0.1 4.2e-31 106.4 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|219853038|ref|YP_002467470.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|219853038|ref|YP_002467470.1| - 0.045 13.5 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|219853038|ref|YP_002467470.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|219853038|ref|YP_002467470.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family Nitroreductase PF00881.19 gi|219853039|ref|YP_002467471.1| - 8.8e-29 100.4 0.0 1.4e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family Fer4_6 PF12837.2 gi|219853039|ref|YP_002467471.1| - 2.2e-11 43.0 11.4 5.5e-07 29.1 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|219853039|ref|YP_002467471.1| - 2.9e-10 39.3 13.8 3.2e-07 29.6 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219853039|ref|YP_002467471.1| - 1.8e-08 34.6 9.1 3.8e-08 33.6 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219853039|ref|YP_002467471.1| - 1e-07 32.1 9.2 1.7e-07 31.3 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219853039|ref|YP_002467471.1| - 1.3e-07 31.3 10.7 2.3e-07 30.5 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219853039|ref|YP_002467471.1| - 4.7e-07 30.4 4.3 0.0045 17.7 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|219853039|ref|YP_002467471.1| - 1.3e-06 27.9 13.7 0.0005 19.8 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219853039|ref|YP_002467471.1| - 2.2e-06 27.5 10.0 4.8e-06 26.4 6.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853039|ref|YP_002467471.1| - 9.6e-05 22.6 11.8 0.01 16.2 8.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219853039|ref|YP_002467471.1| - 0.0008 19.7 12.7 0.15 12.5 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219853039|ref|YP_002467471.1| - 0.0012 19.0 14.7 0.039 14.2 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219853039|ref|YP_002467471.1| - 0.0015 18.3 13.3 0.078 12.8 2.5 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219853039|ref|YP_002467471.1| - 0.0038 17.6 17.9 0.016 15.7 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|219853039|ref|YP_002467471.1| - 3 8.3 14.0 0.15 12.4 2.6 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain CMD PF02627.15 gi|219853040|ref|YP_002467472.1| - 2.9e-33 113.5 0.6 2.6e-17 62.4 0.1 2.2 2 0 0 2 2 2 2 Carboxymuconolactone decarboxylase family TIM21 PF08294.6 gi|219853040|ref|YP_002467472.1| - 0.02 14.5 0.0 0.079 12.6 0.0 1.9 2 1 1 3 3 3 0 TIM21 LIP PF03583.9 gi|219853040|ref|YP_002467472.1| - 0.053 12.7 0.1 0.053 12.7 0.1 1.4 2 0 0 2 2 2 0 Secretory lipase DUF4026 PF13218.1 gi|219853040|ref|YP_002467472.1| - 0.068 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4026) CMS1 PF14617.1 gi|219853040|ref|YP_002467472.1| - 0.15 11.0 0.0 6.3 5.7 0.0 2.2 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit Oxidored_FMN PF00724.15 gi|219853041|ref|YP_002467473.1| - 2.4e-56 191.2 0.0 6.2e-54 183.2 0.0 2.0 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family F420_ligase PF01996.11 gi|219853041|ref|YP_002467473.1| - 0.029 13.4 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase AIRC PF00731.15 gi|219853041|ref|YP_002467473.1| - 0.11 11.7 0.3 5.6 6.2 0.0 2.6 3 0 0 3 3 3 0 AIR carboxylase FMN_red PF03358.10 gi|219853042|ref|YP_002467474.1| - 6.9e-22 77.5 0.0 9.4e-22 77.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219853042|ref|YP_002467474.1| - 1.5e-14 54.0 0.0 1.6e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|219853042|ref|YP_002467474.1| - 0.0069 16.3 0.0 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 Flavodoxin domain Nitroreductase PF00881.19 gi|219853043|ref|YP_002467475.1| - 1.9e-37 128.6 0.0 2.8e-37 128.0 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|219853043|ref|YP_002467475.1| - 8.5e-06 25.0 0.3 0.85 8.7 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase DUF3186 PF11382.3 gi|219853043|ref|YP_002467475.1| - 0.02 14.0 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) PAS_9 PF13426.1 gi|219853044|ref|YP_002467476.1| - 3.6e-89 293.9 0.4 9.6e-16 58.0 0.0 8.9 8 0 0 8 8 8 8 PAS domain PAS_4 PF08448.5 gi|219853044|ref|YP_002467476.1| - 3.1e-79 262.1 4.0 2.2e-13 50.1 0.0 9.5 9 1 0 9 9 9 8 PAS fold PAS PF00989.19 gi|219853044|ref|YP_002467476.1| - 2.1e-63 211.1 0.6 6.7e-11 41.9 0.0 9.6 9 1 0 9 9 9 8 PAS fold PAS_8 PF13188.1 gi|219853044|ref|YP_002467476.1| - 7.5e-47 155.6 0.0 4.8e-08 32.5 0.0 9.0 9 0 0 9 9 9 8 PAS domain PAS_3 PF08447.6 gi|219853044|ref|YP_002467476.1| - 5.7e-46 154.5 4.2 4.9e-13 48.9 0.0 8.5 8 1 0 8 8 8 6 PAS fold Response_reg PF00072.19 gi|219853044|ref|YP_002467476.1| - 8.1e-18 64.4 0.0 3.9e-17 62.2 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219853044|ref|YP_002467476.1| - 1.2e-11 44.2 0.2 3.3e-11 42.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|219853044|ref|YP_002467476.1| - 1.2e-05 25.2 6.3 0.01 15.8 0.0 7.1 9 1 2 11 11 11 1 PAS fold PAS_10 PF13596.1 gi|219853044|ref|YP_002467476.1| - 0.00046 20.4 1.3 4.6 7.5 0.1 4.5 3 0 0 3 3 3 1 PAS domain IncA PF04156.9 gi|219853044|ref|YP_002467476.1| - 0.12 11.9 1.6 0.62 9.6 1.1 2.2 1 0 0 1 1 1 0 IncA protein Yip1 PF04893.12 gi|219853045|ref|YP_002467477.1| - 5.6 6.4 17.6 9.2 5.7 12.1 1.4 1 1 0 1 1 1 0 Yip1 domain DUF3566 PF12089.3 gi|219853045|ref|YP_002467477.1| - 6.3 6.8 10.4 5.5 7.0 5.0 1.9 1 1 1 2 2 2 0 Transmembrane domain of unknown function (DUF3566) Flavin_Reduct PF01613.13 gi|219853046|ref|YP_002467478.1| - 5.6e-27 94.4 0.0 6.9e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF169 PF02596.10 gi|219853047|ref|YP_002467479.1| - 1.6e-31 109.4 0.0 2.9e-31 108.5 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised ArCR, COG2043 FMN_red PF03358.10 gi|219853048|ref|YP_002467480.1| - 7.8e-26 90.3 0.0 1e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|219853048|ref|YP_002467480.1| - 2.1e-13 50.2 0.0 2.5e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.2 gi|219853048|ref|YP_002467480.1| - 0.16 12.3 6.4 0.39 11.1 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219853048|ref|YP_002467480.1| - 0.61 10.1 4.5 1.8 8.6 3.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain UPF0066 PF01980.11 gi|219853049|ref|YP_002467481.1| - 8.8e-37 125.7 0.0 1.1e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Pyridox_oxidase PF01243.15 gi|219853050|ref|YP_002467482.1| - 1.2e-09 38.0 0.0 1.6e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase KdpD PF02702.12 gi|219853051|ref|YP_002467483.1| - 2.8e-84 281.4 0.1 4.7e-84 280.7 0.1 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.1 gi|219853051|ref|YP_002467483.1| - 3.8e-12 46.3 11.9 6.9e-12 45.4 8.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Usp PF00582.21 gi|219853051|ref|YP_002467483.1| - 2.7e-07 30.8 0.9 9.3e-07 29.1 0.3 2.1 2 0 0 2 2 2 1 Universal stress protein family GAF_2 PF13185.1 gi|219853051|ref|YP_002467483.1| - 0.039 14.4 0.1 0.18 12.2 0.1 2.2 1 1 0 1 1 1 0 GAF domain MNHE PF01899.11 gi|219853051|ref|YP_002467483.1| - 0.059 12.9 3.1 0.15 11.7 2.1 1.7 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit KdpC PF02669.10 gi|219853052|ref|YP_002467484.1| - 2.9e-42 144.5 0.3 3.1e-42 144.3 0.2 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain DoxX PF07681.7 gi|219853052|ref|YP_002467484.1| - 1.7 9.1 6.6 1.2 9.5 3.3 1.7 2 0 0 2 2 2 0 DoxX Hydrolase PF00702.21 gi|219853053|ref|YP_002467485.1| - 1.9e-33 116.6 2.7 3.1e-33 116.0 1.9 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|219853053|ref|YP_002467485.1| - 2.8e-30 105.0 0.5 2.8e-30 105.0 0.4 2.1 2 0 0 2 2 2 1 E1-E2 ATPase HAD PF12710.2 gi|219853053|ref|YP_002467485.1| - 3.1e-10 40.5 0.0 6.2e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|219853053|ref|YP_002467485.1| - 6.5e-05 22.6 0.6 0.00013 21.6 0.2 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase KdpA PF03814.10 gi|219853054|ref|YP_002467486.1| - 2.2e-211 702.6 28.6 2.5e-211 702.5 19.8 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit ADP_ribosyl_GH PF03747.9 gi|219853056|ref|YP_002467488.1| - 1.1e-69 235.4 0.1 1.3e-69 235.2 0.1 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF2931 PF11153.3 gi|219853057|ref|YP_002467489.1| - 0.096 12.0 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) DUF3359 PF11839.3 gi|219853057|ref|YP_002467489.1| - 0.13 12.5 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) Zn-ribbon_8 PF09723.5 gi|219853058|ref|YP_002467490.1| - 0.065 13.1 0.2 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DDE_Tnp_1 PF01609.16 gi|219853059|ref|YP_002467491.1| - 3.8e-16 59.2 3.2 8.6e-16 58.1 2.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|219853059|ref|YP_002467491.1| - 0.0019 18.3 0.2 0.0043 17.2 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|219853059|ref|YP_002467491.1| - 0.0096 15.5 0.5 0.016 14.8 0.4 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|219853059|ref|YP_002467491.1| - 0.087 12.8 2.5 0.26 11.2 1.7 1.9 1 1 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.6 gi|219853059|ref|YP_002467491.1| - 0.1 12.5 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF3089 PF11288.3 gi|219853059|ref|YP_002467491.1| - 0.18 10.9 0.8 4.2 6.4 0.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3089) zf-CDGSH PF09360.5 gi|219853061|ref|YP_002467493.1| - 3.6e-07 29.9 0.0 5.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type HxlR PF01638.12 gi|219853062|ref|YP_002467494.1| - 4.2e-28 96.7 0.0 5e-28 96.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|219853062|ref|YP_002467494.1| - 0.00027 20.6 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|219853062|ref|YP_002467494.1| - 0.0057 16.6 0.0 0.0076 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|219853062|ref|YP_002467494.1| - 0.017 14.8 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|219853062|ref|YP_002467494.1| - 0.04 13.7 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|219853062|ref|YP_002467494.1| - 0.041 14.1 0.0 0.055 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|219853062|ref|YP_002467494.1| - 0.089 12.5 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.17 gi|219853062|ref|YP_002467494.1| - 0.093 12.4 0.1 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|219853063|ref|YP_002467495.1| - 6.4e-27 93.0 0.0 7.4e-27 92.8 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|219853063|ref|YP_002467495.1| - 0.00078 19.4 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|219853063|ref|YP_002467495.1| - 0.001 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|219853063|ref|YP_002467495.1| - 0.0025 17.4 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|219853063|ref|YP_002467495.1| - 0.018 14.8 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|219853063|ref|YP_002467495.1| - 0.03 13.9 0.1 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|219853063|ref|YP_002467495.1| - 0.063 13.0 0.0 0.088 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Crp PF00325.15 gi|219853063|ref|YP_002467495.1| - 0.072 12.5 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF2148 PF09918.4 gi|219853064|ref|YP_002467496.1| - 1.8e-31 107.6 1.3 3.7e-31 106.6 0.9 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|219853064|ref|YP_002467496.1| - 6.6e-05 22.4 6.6 0.00013 21.4 4.6 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster DUF457 PF04307.9 gi|219853067|ref|YP_002467499.1| - 4.3e-12 45.6 20.2 7.3e-12 44.8 13.9 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Tautomerase PF01361.16 gi|219853068|ref|YP_002467500.1| - 4.1e-17 61.5 0.1 4.6e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|219853068|ref|YP_002467500.1| - 6.1e-08 32.7 0.0 7.1e-08 32.5 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Tautomerase_2 PF14552.1 gi|219853068|ref|YP_002467500.1| - 8e-06 25.7 0.0 9.1e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme MIF PF01187.13 gi|219853068|ref|YP_002467500.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Macrophage migration inhibitory factor (MIF) Methyltransf_31 PF13847.1 gi|219853069|ref|YP_002467501.1| - 4.6e-13 49.0 0.0 9.3e-13 48.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|219853069|ref|YP_002467501.1| - 1.1e-12 48.4 0.0 2.2e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|219853069|ref|YP_002467501.1| - 4.4e-11 43.1 0.0 9.1e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|219853069|ref|YP_002467501.1| - 4.2e-10 39.9 0.0 9.4e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|219853069|ref|YP_002467501.1| - 8.9e-09 34.9 0.0 1.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|219853069|ref|YP_002467501.1| - 8.9e-09 35.6 0.0 1.8e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|219853069|ref|YP_002467501.1| - 7.5e-08 32.2 0.0 1.4e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|219853069|ref|YP_002467501.1| - 1.3e-07 30.9 0.0 1.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|219853069|ref|YP_002467501.1| - 2.4e-05 23.5 0.0 3.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|219853069|ref|YP_002467501.1| - 4e-05 23.6 0.0 5.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|219853069|ref|YP_002467501.1| - 0.0003 19.9 0.0 0.00046 19.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|219853069|ref|YP_002467501.1| - 0.00035 20.0 0.0 0.00051 19.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.8 gi|219853069|ref|YP_002467501.1| - 0.0015 17.7 0.0 0.0029 16.7 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|219853069|ref|YP_002467501.1| - 0.0022 17.0 0.0 0.0032 16.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|219853069|ref|YP_002467501.1| - 0.0039 16.2 0.0 0.0061 15.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|219853069|ref|YP_002467501.1| - 0.017 14.8 0.0 0.039 13.6 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.7 gi|219853069|ref|YP_002467501.1| - 0.029 13.2 0.0 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase FtsJ PF01728.14 gi|219853069|ref|YP_002467501.1| - 0.055 13.4 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|219853069|ref|YP_002467501.1| - 0.064 12.8 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|219853069|ref|YP_002467501.1| - 0.071 12.1 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase OsmC PF02566.14 gi|219853069|ref|YP_002467501.1| - 0.13 12.4 0.0 0.82 9.8 0.0 2.2 2 1 0 2 2 2 0 OsmC-like protein MoCF_biosynth PF00994.19 gi|219853070|ref|YP_002467502.1| - 7.2e-32 109.7 0.0 1.3e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_N PF03453.12 gi|219853070|ref|YP_002467502.1| - 3.6e-26 91.4 0.0 5.2e-25 87.6 0.0 2.2 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) HTH_17 PF12728.2 gi|219853071|ref|YP_002467503.1| - 2.4e-11 43.6 0.5 3.3e-11 43.2 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF35 PF01796.12 gi|219853072|ref|YP_002467504.1| - 3.3e-15 56.0 0.0 4.7e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|219853072|ref|YP_002467504.1| - 2.2e-09 36.9 4.0 3.7e-09 36.2 2.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|219853072|ref|YP_002467504.1| - 0.0052 16.5 0.5 0.0082 15.9 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Thiolase_N PF00108.18 gi|219853073|ref|YP_002467505.1| - 7e-12 44.8 0.6 2.6e-10 39.7 0.1 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|219853073|ref|YP_002467505.1| - 9.3e-12 44.4 0.7 2.3e-11 43.1 0.5 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|219853073|ref|YP_002467505.1| - 4.3e-05 23.1 2.6 4.3e-05 23.1 1.8 3.0 2 1 2 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|219853074|ref|YP_002467506.1| - 5.3e-10 39.1 0.0 1.1e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|219853074|ref|YP_002467506.1| - 4.2e-08 32.9 0.2 5.9e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|219853074|ref|YP_002467506.1| - 3e-05 23.6 0.1 0.0069 15.8 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|219853074|ref|YP_002467506.1| - 0.0014 18.2 1.0 0.0014 18.2 0.7 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.17 gi|219853075|ref|YP_002467507.1| - 3.4e-07 30.0 0.0 8.2e-07 28.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|219853075|ref|YP_002467507.1| - 9.8e-05 22.4 0.0 0.00019 21.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|219853075|ref|YP_002467507.1| - 0.00014 21.8 0.0 0.00028 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain VP7 PF00434.13 gi|219853075|ref|YP_002467507.1| - 0.048 12.5 0.1 0.069 12.0 0.1 1.1 1 0 0 1 1 1 0 Glycoprotein VP7 CTP-dep_RFKase PF01982.11 gi|219853076|ref|YP_002467508.1| - 1.9e-46 156.5 0.0 3e-46 155.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.2 gi|219853076|ref|YP_002467508.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|219853076|ref|YP_002467508.1| - 0.024 14.4 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|219853076|ref|YP_002467508.1| - 0.031 13.8 0.3 0.064 12.8 0.1 1.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|219853076|ref|YP_002467508.1| - 0.031 13.9 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|219853076|ref|YP_002467508.1| - 0.043 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DHBP_synthase PF00926.14 gi|219853077|ref|YP_002467509.1| - 3.5e-63 212.3 0.0 4.2e-63 212.0 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF1888 PF08985.6 gi|219853077|ref|YP_002467509.1| - 0.031 13.9 0.0 1.2 8.8 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1888) DHBP_synthase PF00926.14 gi|219853078|ref|YP_002467510.1| - 2.3e-62 209.6 0.0 2.7e-62 209.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase HEAT_2 PF13646.1 gi|219853079|ref|YP_002467511.1| - 7.5e-20 71.0 0.0 9e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.11 gi|219853079|ref|YP_002467511.1| - 6.8e-14 50.8 2.7 3.8e-06 26.8 0.1 2.6 2 1 1 3 3 3 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219853079|ref|YP_002467511.1| - 3.3e-07 30.5 0.8 7.9e-07 29.3 0.2 1.9 2 1 0 2 2 2 1 HEAT-like repeat HEAT PF02985.17 gi|219853079|ref|YP_002467511.1| - 5.1e-07 29.2 0.0 0.0014 18.4 0.0 2.4 2 0 0 2 2 2 2 HEAT repeat LysE PF01810.13 gi|219853080|ref|YP_002467512.1| - 8.6e-27 93.6 14.4 1.1e-26 93.2 10.0 1.1 1 0 0 1 1 1 1 LysE type translocator Metallophos_2 PF12850.2 gi|219853081|ref|YP_002467513.1| - 8.8e-07 28.8 0.2 1.1e-05 25.3 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|219853081|ref|YP_002467513.1| - 2e-05 24.0 0.3 7.3e-05 22.2 0.2 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF2839 PF10999.3 gi|219853082|ref|YP_002467514.1| - 0.13 12.3 0.1 1.1 9.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) Glyoxalase_2 PF12681.2 gi|219853083|ref|YP_002467515.1| - 1.5e-10 41.6 0.2 4.3e-10 40.1 0.0 1.7 1 1 1 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|219853083|ref|YP_002467515.1| - 0.0011 18.9 0.1 0.0023 17.9 0.0 1.6 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r1_1 PF03979.9 gi|219853083|ref|YP_002467515.1| - 0.019 14.8 0.9 0.028 14.3 0.2 1.5 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 Acetyltransf_9 PF13527.1 gi|219853084|ref|YP_002467516.1| - 8e-13 48.3 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|219853084|ref|YP_002467516.1| - 8.4e-10 38.5 0.0 1.4e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|219853084|ref|YP_002467516.1| - 5e-06 26.5 0.0 9.3e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|219853084|ref|YP_002467516.1| - 0.00058 19.9 0.0 0.00073 19.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|219853084|ref|YP_002467516.1| - 0.049 13.5 0.0 0.069 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.13 gi|219853084|ref|YP_002467516.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family Pcc1 PF09341.5 gi|219853085|ref|YP_002467517.1| - 8.5e-16 57.7 0.2 9.8e-16 57.5 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|219853086|ref|YP_002467518.1| - 0.084 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Brix domain DNA_RNApol_7kD PF03604.8 gi|219853087|ref|YP_002467519.1| - 1.9e-11 43.2 5.3 2.4e-11 42.8 3.7 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPXG PF14255.1 gi|219853087|ref|YP_002467519.1| - 0.0015 18.2 2.8 0.17 11.7 0.4 2.1 1 1 1 2 2 2 2 Cysteine-rich CPXCG TFIIS_C PF01096.13 gi|219853087|ref|YP_002467519.1| - 0.0018 17.8 3.0 0.059 13.0 0.5 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|219853087|ref|YP_002467519.1| - 0.0035 16.7 0.7 0.0052 16.2 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|219853087|ref|YP_002467519.1| - 0.0044 16.6 0.4 0.0044 16.6 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|219853087|ref|YP_002467519.1| - 0.0048 16.4 2.0 0.007 15.9 1.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF329) Zn_Tnp_IS1595 PF12760.2 gi|219853087|ref|YP_002467519.1| - 0.0057 16.4 5.2 0.51 10.1 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|219853087|ref|YP_002467519.1| - 0.018 14.5 2.5 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|219853087|ref|YP_002467519.1| - 0.021 14.6 0.8 0.03 14.1 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|219853087|ref|YP_002467519.1| - 0.026 13.7 2.9 0.082 12.1 2.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|219853087|ref|YP_002467519.1| - 0.029 14.3 4.9 0.43 10.5 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-AN1 PF01428.11 gi|219853087|ref|YP_002467519.1| - 0.037 13.8 1.4 0.05 13.4 0.9 1.3 1 0 0 1 1 1 0 AN1-like Zinc finger DUF2197 PF09963.4 gi|219853087|ref|YP_002467519.1| - 0.039 13.9 2.2 0.25 11.3 0.9 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc-ribbons_6 PF07191.7 gi|219853087|ref|YP_002467519.1| - 0.046 13.5 0.2 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons DUF1272 PF06906.6 gi|219853087|ref|YP_002467519.1| - 0.048 13.5 0.6 0.052 13.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-Sec23_Sec24 PF04810.10 gi|219853087|ref|YP_002467519.1| - 0.054 13.0 2.2 0.64 9.6 0.1 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger DUF951 PF06107.6 gi|219853087|ref|YP_002467519.1| - 0.06 12.8 3.2 0.56 9.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_5 PF13719.1 gi|219853087|ref|YP_002467519.1| - 0.069 12.7 6.9 15 5.2 1.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|219853087|ref|YP_002467519.1| - 0.07 13.4 2.3 0.071 13.4 0.1 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-HIT PF04438.11 gi|219853087|ref|YP_002467519.1| - 0.072 12.7 3.1 1.2 8.8 0.9 2.0 2 0 0 2 2 2 0 HIT zinc finger Prok-RING_1 PF14446.1 gi|219853087|ref|YP_002467519.1| - 0.076 12.7 2.9 0.099 12.3 2.0 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|219853087|ref|YP_002467519.1| - 0.077 12.6 1.4 0.1 12.2 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|219853087|ref|YP_002467519.1| - 0.088 12.5 6.5 18 5.1 4.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|219853087|ref|YP_002467519.1| - 0.091 12.6 0.7 0.11 12.4 0.5 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2296 PF10058.4 gi|219853087|ref|YP_002467519.1| - 0.11 12.2 2.7 6.1 6.6 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Elf1 PF05129.8 gi|219853087|ref|YP_002467519.1| - 0.12 12.1 3.0 1.4 8.6 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|219853087|ref|YP_002467519.1| - 0.13 11.6 3.2 1.2 8.5 0.2 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|219853087|ref|YP_002467519.1| - 0.15 11.4 3.0 5.2 6.5 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-NADH-PPase PF09297.6 gi|219853087|ref|YP_002467519.1| - 0.16 11.4 3.0 1 8.9 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-DNL PF05180.7 gi|219853087|ref|YP_002467519.1| - 0.27 10.9 2.7 3.4 7.4 0.4 2.0 1 1 1 2 2 2 0 DNL zinc finger UPF0547 PF10571.4 gi|219853087|ref|YP_002467519.1| - 0.28 10.9 7.9 1.4 8.6 5.7 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 CpXC PF14353.1 gi|219853087|ref|YP_002467519.1| - 0.31 10.9 2.8 5.2 7.0 0.1 2.0 1 1 1 2 2 2 0 CpXC protein RRN7 PF11781.3 gi|219853087|ref|YP_002467519.1| - 0.34 10.4 3.6 0.72 9.4 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-FCS PF06467.9 gi|219853087|ref|YP_002467519.1| - 0.35 10.5 0.1 0.35 10.5 0.0 2.0 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif OrfB_Zn_ribbon PF07282.6 gi|219853087|ref|YP_002467519.1| - 0.45 10.2 3.5 3.8 7.2 0.2 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ZZ PF00569.12 gi|219853087|ref|YP_002467519.1| - 0.48 10.0 3.3 0.6 9.6 2.3 1.2 1 0 0 1 1 1 0 Zinc finger, ZZ type Prok-RING_4 PF14447.1 gi|219853087|ref|YP_002467519.1| - 0.53 9.8 3.2 2.1 7.9 2.2 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 zf-LITAF-like PF10601.4 gi|219853087|ref|YP_002467519.1| - 0.55 10.1 2.6 2.2 8.1 0.1 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.7 gi|219853087|ref|YP_002467519.1| - 0.64 10.1 3.5 0.97 9.6 0.2 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Mu-like_Com PF10122.4 gi|219853087|ref|YP_002467519.1| - 2.2 7.4 6.6 5.9 6.0 0.2 2.2 1 1 2 3 3 3 0 Mu-like prophage protein Com zf-LSD1 PF06943.7 gi|219853087|ref|YP_002467519.1| - 4.6 6.9 6.1 1.6 8.4 0.2 2.1 2 0 0 2 2 2 0 LSD1 zinc finger Ribosomal_L37ae PF01780.14 gi|219853088|ref|YP_002467520.1| - 1.5e-31 108.0 4.7 1.7e-31 107.9 3.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family IBR PF01485.16 gi|219853088|ref|YP_002467520.1| - 0.018 14.8 1.0 0.028 14.2 0.7 1.2 1 0 0 1 1 1 0 IBR domain OrfB_Zn_ribbon PF07282.6 gi|219853088|ref|YP_002467520.1| - 0.035 13.7 2.3 0.045 13.4 1.2 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|219853088|ref|YP_002467520.1| - 0.051 13.3 1.9 0.051 13.3 1.3 1.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain UPF0515 PF15135.1 gi|219853088|ref|YP_002467520.1| - 0.097 11.7 1.2 0.11 11.5 0.8 1.1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 zf-RanBP PF00641.13 gi|219853088|ref|YP_002467520.1| - 0.2 10.7 2.7 4.6 6.4 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-BED PF02892.10 gi|219853088|ref|YP_002467520.1| - 0.54 10.0 2.8 0.55 10.0 0.7 1.9 2 1 0 2 2 2 0 BED zinc finger SBDS PF01172.13 gi|219853089|ref|YP_002467521.1| - 2.3e-24 85.0 0.0 3.6e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|219853089|ref|YP_002467521.1| - 2.2e-19 69.3 0.0 3.1e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|219853090|ref|YP_002467522.1| - 3e-59 199.5 0.1 3.9e-59 199.1 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|219853090|ref|YP_002467522.1| - 1.2e-14 53.3 0.2 2.2e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|219853091|ref|YP_002467523.1| - 2e-15 56.5 0.0 2.6e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family SWI-SNF_Ssr4 PF08549.5 gi|219853091|ref|YP_002467523.1| - 0.0014 17.0 0.0 0.0019 16.6 0.0 1.1 1 0 0 1 1 1 1 Fungal domain of unknown function (DUF1750) RNase_P_p30 PF01876.11 gi|219853092|ref|YP_002467524.1| - 1.1e-19 70.2 0.0 1.3e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Ribosomal_L15e PF00827.12 gi|219853093|ref|YP_002467525.1| - 3.9e-80 267.8 8.1 4.6e-80 267.6 5.6 1.0 1 0 0 1 1 1 1 Ribosomal L15 MoaC PF01967.16 gi|219853094|ref|YP_002467526.1| - 1.2e-47 161.0 3.2 1.3e-47 160.8 2.2 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|219853095|ref|YP_002467527.1| - 5.8e-43 146.9 0.2 9.5e-43 146.2 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|219853095|ref|YP_002467527.1| - 4.4e-28 97.9 0.0 7.1e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|219853095|ref|YP_002467527.1| - 4.3e-05 22.8 0.0 9.5e-05 21.6 0.0 1.5 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Glyco_trans_1_4 PF13692.1 gi|219853095|ref|YP_002467527.1| - 0.034 14.3 0.3 0.27 11.3 0.0 2.5 2 2 1 3 3 3 0 Glycosyl transferases group 1 OKR_DC_1_C PF03711.10 gi|219853095|ref|YP_002467527.1| - 0.17 11.8 0.0 0.48 10.4 0.0 1.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, C-terminal domain DHH PF01368.15 gi|219853096|ref|YP_002467528.1| - 7.1e-14 51.6 0.0 1.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|219853096|ref|YP_002467528.1| - 2.5e-08 33.4 0.0 1.3e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 DHHA1 domain TGT_C2 PF14810.1 gi|219853097|ref|YP_002467529.1| - 2.8e-32 110.3 0.1 4.7e-32 109.6 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|219853097|ref|YP_002467529.1| - 1.4e-17 63.1 1.1 2e-17 62.6 0.7 1.2 1 0 0 1 1 1 1 PUA domain NAC PF01849.13 gi|219853098|ref|YP_002467530.1| - 3.1e-16 58.6 1.7 5.4e-16 57.8 1.2 1.4 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|219853098|ref|YP_002467530.1| - 6.2e-06 25.8 0.2 6.2e-06 25.8 0.1 2.1 2 0 0 2 2 2 1 UBA/TS-N domain Methyltransf_18 PF12847.2 gi|219853099|ref|YP_002467531.1| - 5.2e-11 43.1 0.0 8e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|219853099|ref|YP_002467531.1| - 3.9e-10 39.7 0.2 1.6e-09 37.7 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|219853099|ref|YP_002467531.1| - 5.4e-09 35.8 0.0 7e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|219853099|ref|YP_002467531.1| - 2.4e-08 33.3 0.0 3.8e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|219853099|ref|YP_002467531.1| - 2.1e-07 30.7 0.0 3.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|219853099|ref|YP_002467531.1| - 5e-07 29.2 0.2 2.9e-06 26.7 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.5 gi|219853099|ref|YP_002467531.1| - 3e-06 26.9 0.0 3.7e-05 23.3 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.1 gi|219853099|ref|YP_002467531.1| - 1.9e-05 24.4 0.0 3.9e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|219853099|ref|YP_002467531.1| - 9.7e-05 21.6 0.0 0.00013 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|219853099|ref|YP_002467531.1| - 0.00023 21.5 0.0 0.00064 20.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|219853099|ref|YP_002467531.1| - 0.001 19.4 0.0 0.0019 18.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.8 gi|219853099|ref|YP_002467531.1| - 0.0056 15.8 0.0 0.0076 15.4 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Voltage_CLC PF00654.15 gi|219853099|ref|YP_002467531.1| - 0.048 12.6 0.0 0.052 12.5 0.0 1.1 1 0 0 1 1 1 0 Voltage gated chloride channel Methyltransf_12 PF08242.7 gi|219853099|ref|YP_002467531.1| - 0.096 13.1 0.1 0.47 10.9 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|219853099|ref|YP_002467531.1| - 0.15 11.5 0.3 1.1 8.7 0.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF938) OTCace_N PF02729.16 gi|219853100|ref|YP_002467532.1| - 3.6e-46 156.3 0.0 1.3e-45 154.5 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|219853100|ref|YP_002467532.1| - 1.6e-33 115.8 0.0 2.4e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Phos_pyr_kin PF08543.7 gi|219853100|ref|YP_002467532.1| - 0.039 13.1 0.0 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase PyrI PF01948.13 gi|219853101|ref|YP_002467533.1| - 2.3e-33 114.0 0.2 3e-33 113.7 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|219853101|ref|YP_002467533.1| - 3.3e-18 64.8 1.4 5.8e-18 64.0 0.9 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain CTP_transf_2 PF01467.21 gi|219853102|ref|YP_002467534.1| - 1.4e-13 51.2 0.0 8.4e-13 48.6 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|219853102|ref|YP_002467534.1| - 0.0036 16.9 0.1 0.0049 16.5 0.0 1.4 1 1 0 1 1 1 1 FAD synthetase Hexapep PF00132.19 gi|219853103|ref|YP_002467535.1| - 1.9e-18 65.0 27.0 5.7e-08 31.9 3.6 4.4 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|219853103|ref|YP_002467535.1| - 2e-05 24.0 20.4 0.0014 18.0 4.4 4.0 2 1 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.9 gi|219853104|ref|YP_002467536.1| - 3.8e-15 56.3 0.7 1.2e-13 51.4 0.5 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|219853104|ref|YP_002467536.1| - 1.1e-12 46.9 15.1 6.9e-07 28.6 3.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219853104|ref|YP_002467536.1| - 1e-08 34.6 21.5 2.6e-07 30.2 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain DAO PF01266.19 gi|219853104|ref|YP_002467536.1| - 2e-07 30.2 0.8 2.5e-05 23.3 0.4 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase Fer4_10 PF13237.1 gi|219853104|ref|YP_002467536.1| - 3e-07 30.1 19.7 1.2e-06 28.2 7.3 3.1 3 1 1 4 4 3 2 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|219853104|ref|YP_002467536.1| - 3.1e-07 30.3 0.0 6.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_9 PF13187.1 gi|219853104|ref|YP_002467536.1| - 3.2e-07 30.4 8.3 3.2e-07 30.4 5.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219853104|ref|YP_002467536.1| - 1.7e-06 27.5 12.2 5.6e-05 22.8 2.8 4.1 5 0 0 5 5 3 2 4Fe-4S binding domain Pyr_redox PF00070.22 gi|219853104|ref|YP_002467536.1| - 3.2e-06 27.4 0.5 3.2e-05 24.2 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_17 PF13534.1 gi|219853104|ref|YP_002467536.1| - 4.2e-06 27.0 4.6 4.2e-06 27.0 3.2 2.5 3 1 0 3 3 2 1 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|219853104|ref|YP_002467536.1| - 9e-06 24.7 1.0 1.4e-05 24.1 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|219853104|ref|YP_002467536.1| - 2.2e-05 24.3 14.0 0.0046 16.9 2.4 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|219853104|ref|YP_002467536.1| - 3e-05 24.1 0.8 0.00034 20.7 0.1 2.5 3 1 1 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|219853104|ref|YP_002467536.1| - 4.7e-05 22.6 0.5 7e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|219853104|ref|YP_002467536.1| - 5.5e-05 22.3 0.0 0.00015 20.9 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Fer4_7 PF12838.2 gi|219853104|ref|YP_002467536.1| - 5.8e-05 23.3 20.7 0.0023 18.2 4.4 3.3 3 1 0 3 3 2 2 4Fe-4S dicluster domain GIDA PF01134.17 gi|219853104|ref|YP_002467536.1| - 6.7e-05 21.9 0.1 6.7e-05 21.9 0.1 1.5 2 0 0 2 2 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|219853104|ref|YP_002467536.1| - 9.2e-05 21.0 0.5 0.00016 20.2 0.3 1.4 1 1 0 1 1 1 1 HI0933-like protein Fer4_16 PF13484.1 gi|219853104|ref|YP_002467536.1| - 0.00025 21.7 10.3 0.13 12.9 0.1 3.6 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|219853104|ref|YP_002467536.1| - 0.0027 18.2 12.0 0.0043 17.5 0.4 2.9 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219853104|ref|YP_002467536.1| - 0.0032 17.8 10.1 0.35 11.2 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain 3HCDH_N PF02737.13 gi|219853104|ref|YP_002467536.1| - 0.0039 16.8 0.2 0.0067 16.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_21 PF14697.1 gi|219853104|ref|YP_002467536.1| - 0.0052 16.6 8.3 0.017 14.9 1.2 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219853104|ref|YP_002467536.1| - 0.0057 16.8 2.3 0.0057 16.8 1.6 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain NAD_binding_9 PF13454.1 gi|219853104|ref|YP_002467536.1| - 0.0075 16.0 0.5 0.034 13.9 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|219853104|ref|YP_002467536.1| - 0.026 13.6 0.2 3.7 6.5 0.3 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|219853104|ref|YP_002467536.1| - 0.028 13.3 0.1 0.044 12.7 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_18 PF13746.1 gi|219853104|ref|YP_002467536.1| - 0.031 14.6 0.7 0.031 14.6 0.5 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|219853104|ref|YP_002467536.1| - 0.11 11.5 0.3 0.17 10.9 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain IF-2B PF01008.12 gi|219853105|ref|YP_002467537.1| - 1.1e-71 241.1 0.0 1.2e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ACP_syn_III PF08545.5 gi|219853105|ref|YP_002467537.1| - 1.5 8.5 6.4 0.23 11.1 0.6 2.6 3 1 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF116 PF01976.12 gi|219853106|ref|YP_002467538.1| - 3.4e-44 150.1 0.0 4.1e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 Bactofilin PF04519.8 gi|219853107|ref|YP_002467539.1| - 7.5e-07 29.1 2.2 0.00095 19.1 0.0 2.1 1 1 1 2 2 2 2 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|219853107|ref|YP_002467539.1| - 0.02 14.5 1.7 0.046 13.3 0.4 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3494) DUF342 PF03961.8 gi|219853107|ref|YP_002467539.1| - 0.021 13.2 0.4 0.021 13.2 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF342) Hexapep PF00132.19 gi|219853107|ref|YP_002467539.1| - 0.11 12.0 10.6 7.4 6.2 0.0 5.0 5 1 1 6 6 6 0 Bacterial transferase hexapeptide (six repeats) UbiA PF01040.13 gi|219853108|ref|YP_002467540.1| - 7.3e-39 133.5 24.5 9.5e-39 133.1 17.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family TRM PF02005.11 gi|219853109|ref|YP_002467541.1| - 9.9e-91 304.4 0.0 1.1e-90 304.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|219853109|ref|YP_002467541.1| - 0.00071 19.6 0.7 0.0013 18.7 0.4 1.6 1 1 0 1 1 1 1 Methyltransferase domain zf-ribbon_3 PF13248.1 gi|219853109|ref|YP_002467541.1| - 0.031 13.4 1.6 0.031 13.4 1.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Cons_hypoth95 PF03602.10 gi|219853109|ref|YP_002467541.1| - 0.06 12.7 0.0 0.22 10.8 0.0 1.8 1 1 1 2 2 2 0 Conserved hypothetical protein 95 Rubredoxin PF00301.15 gi|219853109|ref|YP_002467541.1| - 2.3 8.1 5.7 35 4.3 4.2 2.4 1 1 1 2 2 2 0 Rubredoxin MMR_HSR1 PF01926.18 gi|219853110|ref|YP_002467542.1| - 1.2e-18 67.2 0.1 2.3e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|219853110|ref|YP_002467542.1| - 7.8e-18 64.0 0.0 1.9e-17 62.8 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|219853110|ref|YP_002467542.1| - 3e-15 55.8 0.4 1.4e-12 47.2 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B SRPRB PF09439.5 gi|219853110|ref|YP_002467542.1| - 0.00016 20.9 0.1 0.012 14.8 0.1 2.3 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|219853110|ref|YP_002467542.1| - 0.00037 19.7 0.8 0.078 12.2 0.1 2.7 2 1 1 3 3 3 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|219853110|ref|YP_002467542.1| - 0.00064 18.9 0.1 0.0043 16.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|219853110|ref|YP_002467542.1| - 0.001 18.9 0.7 0.1 12.4 0.3 2.4 1 1 1 2 2 2 1 Dynamin family AIG1 PF04548.11 gi|219853110|ref|YP_002467542.1| - 0.0011 18.0 0.1 0.0021 17.2 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|219853110|ref|YP_002467542.1| - 0.0022 18.4 0.0 0.0047 17.4 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|219853110|ref|YP_002467542.1| - 0.0025 17.2 1.4 0.21 10.9 0.0 3.1 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|219853110|ref|YP_002467542.1| - 0.0063 15.3 0.3 0.0063 15.3 0.2 2.1 2 0 0 2 2 2 1 ArgK protein cobW PF02492.14 gi|219853110|ref|YP_002467542.1| - 0.015 14.7 2.1 0.65 9.4 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|219853110|ref|YP_002467542.1| - 0.051 13.5 0.2 0.099 12.5 0.2 1.5 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|219853110|ref|YP_002467542.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 MCM2/3/5 family zinc_ribbon_2 PF13240.1 gi|219853111|ref|YP_002467543.1| - 8.4e-09 34.6 17.2 9.3e-05 21.7 3.3 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|219853111|ref|YP_002467543.1| - 8.8e-06 24.7 13.5 0.0036 16.4 2.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|219853111|ref|YP_002467543.1| - 1.2e-05 25.0 9.6 5.6e-05 22.8 6.9 1.9 1 1 1 2 2 2 2 Double zinc ribbon Cytochrom_NNT PF03264.9 gi|219853111|ref|YP_002467543.1| - 0.32 10.4 6.4 1.3 8.4 0.4 2.6 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region zf-C3HC4_3 PF13920.1 gi|219853111|ref|YP_002467543.1| - 0.32 10.7 7.5 3.3 7.4 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CCHC PF00098.18 gi|219853111|ref|YP_002467543.1| - 0.53 10.3 5.0 12 6.0 0.5 2.7 2 0 0 2 2 2 0 Zinc knuckle Cytochrom_c3_2 PF14537.1 gi|219853111|ref|YP_002467543.1| - 1.2 9.5 8.4 3.8 7.9 5.8 1.9 1 1 0 1 1 1 0 Cytochrome c3 NOB1_Zn_bind PF08772.6 gi|219853111|ref|YP_002467543.1| - 9.5 6.1 12.5 1.2 9.0 0.4 2.9 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Resolvase PF00239.16 gi|219853112|ref|YP_002467544.1| - 3.2e-27 95.1 0.0 4.1e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4_2 PF08281.7 gi|219853112|ref|YP_002467544.1| - 0.0008 18.8 0.0 0.0028 17.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|219853112|ref|YP_002467544.1| - 0.0036 16.8 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_26 PF13443.1 gi|219853112|ref|YP_002467544.1| - 0.012 15.7 0.5 0.036 14.2 0.1 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.1 gi|219853112|ref|YP_002467544.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.10 gi|219853112|ref|YP_002467544.1| - 0.022 14.5 0.0 0.32 10.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_Tnp_IS630 PF01710.11 gi|219853112|ref|YP_002467544.1| - 0.029 14.0 0.2 0.046 13.3 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_24 PF13412.1 gi|219853112|ref|YP_002467544.1| - 0.031 13.6 0.0 0.077 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|219853112|ref|YP_002467544.1| - 0.038 13.8 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix MarR PF01047.17 gi|219853112|ref|YP_002467544.1| - 0.043 13.5 0.2 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.1 gi|219853112|ref|YP_002467544.1| - 0.047 13.2 0.1 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF134 PF02001.11 gi|219853112|ref|YP_002467544.1| - 0.047 13.5 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_17 PF12728.2 gi|219853113|ref|YP_002467545.1| - 9.9e-12 44.9 0.1 1.2e-11 44.7 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|219853113|ref|YP_002467545.1| - 3.3e-06 26.5 0.3 1.1e-05 24.8 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|219853113|ref|YP_002467545.1| - 0.00019 20.9 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|219853113|ref|YP_002467545.1| - 0.00026 20.9 0.1 0.00042 20.2 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|219853113|ref|YP_002467545.1| - 0.00036 20.2 0.5 0.00049 19.8 0.4 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_29 PF13551.1 gi|219853113|ref|YP_002467545.1| - 0.0015 18.6 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.7 gi|219853113|ref|YP_002467545.1| - 0.0018 17.9 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|219853113|ref|YP_002467545.1| - 0.0025 17.2 0.0 0.0037 16.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Exc PF07825.6 gi|219853113|ref|YP_002467545.1| - 0.0036 17.0 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Excisionase-like protein MerR PF00376.18 gi|219853113|ref|YP_002467545.1| - 0.0051 16.3 0.1 0.0081 15.7 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein DUF658 PF04936.7 gi|219853113|ref|YP_002467545.1| - 0.006 16.4 0.0 0.0067 16.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF658) Terminase_5 PF06056.7 gi|219853113|ref|YP_002467545.1| - 0.0095 15.4 0.3 0.017 14.6 0.1 1.6 1 1 1 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_ISL3 PF13542.1 gi|219853113|ref|YP_002467545.1| - 0.012 14.8 0.1 0.015 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF1323 PF07037.6 gi|219853113|ref|YP_002467545.1| - 0.016 15.3 0.3 0.021 14.9 0.2 1.3 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_36 PF13730.1 gi|219853113|ref|YP_002467545.1| - 0.02 14.9 0.3 0.043 13.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|219853113|ref|YP_002467545.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_19 PF12844.2 gi|219853113|ref|YP_002467545.1| - 0.027 14.5 0.1 0.028 14.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2336 PF10098.4 gi|219853113|ref|YP_002467545.1| - 0.032 13.4 0.0 0.037 13.2 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2336) HTH_Tnp_IS630 PF01710.11 gi|219853113|ref|YP_002467545.1| - 0.039 13.6 0.2 0.044 13.4 0.1 1.1 1 0 0 1 1 1 0 Transposase HTH_40 PF14493.1 gi|219853113|ref|YP_002467545.1| - 0.052 13.7 0.1 0.058 13.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_AlpA PF05930.7 gi|219853113|ref|YP_002467545.1| - 0.07 12.8 0.1 0.53 10.0 0.0 2.0 2 0 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) Borrelia_REV PF03978.8 gi|219853113|ref|YP_002467545.1| - 0.08 12.6 0.1 0.091 12.4 0.1 1.0 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein DUF3853 PF12964.2 gi|219853113|ref|YP_002467545.1| - 0.11 12.3 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) LacI PF00356.16 gi|219853113|ref|YP_002467545.1| - 0.12 11.9 0.0 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_22 PF13309.1 gi|219853113|ref|YP_002467545.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain D5_N PF08706.6 gi|219853114|ref|YP_002467546.1| - 7.4e-09 35.8 0.0 2e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 D5 N terminal like Pox_D5 PF03288.11 gi|219853114|ref|YP_002467546.1| - 4.9e-07 29.9 3.3 3.2e-06 27.3 0.1 2.8 2 0 0 2 2 2 1 Poxvirus D5 protein-like HEPN PF05168.9 gi|219853115|ref|YP_002467547.1| - 0.00016 21.5 1.3 0.00046 20.0 0.8 1.8 2 0 0 2 2 2 1 HEPN domain Lge1 PF11488.3 gi|219853115|ref|YP_002467547.1| - 0.076 13.2 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 Phage_integrase PF00589.17 gi|219853116|ref|YP_002467548.1| - 1.9e-05 24.3 0.0 0.0003 20.5 0.0 2.3 2 1 1 3 3 3 2 Phage integrase family PAS_4 PF08448.5 gi|219853117|ref|YP_002467549.1| - 9.7e-62 205.8 0.0 4.1e-15 55.7 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|219853117|ref|YP_002467549.1| - 1.2e-58 195.8 0.0 1.2e-15 57.6 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|219853117|ref|YP_002467549.1| - 5e-58 193.7 0.0 1.3e-15 57.2 0.0 4.8 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|219853117|ref|YP_002467549.1| - 3.1e-23 80.7 0.0 7.4e-07 28.8 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|219853117|ref|YP_002467549.1| - 1.7e-15 56.9 0.0 0.00084 19.3 0.0 4.7 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|219853117|ref|YP_002467549.1| - 1.9e-15 56.5 0.1 4.2e-15 55.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|219853117|ref|YP_002467549.1| - 5e-11 42.8 0.0 0.0034 17.6 0.0 3.8 4 0 0 4 4 4 3 PAS domain SPOB_a PF14689.1 gi|219853117|ref|YP_002467549.1| - 0.0043 16.5 0.0 0.0097 15.4 0.0 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|219853117|ref|YP_002467549.1| - 0.0056 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4118 PF13493.1 gi|219853117|ref|YP_002467549.1| - 0.056 13.6 12.7 0.11 12.7 8.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HATPase_c_5 PF14501.1 gi|219853117|ref|YP_002467549.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain PAS_5 PF07310.8 gi|219853117|ref|YP_002467549.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 PAS domain PAS_7 PF12860.2 gi|219853117|ref|YP_002467549.1| - 0.17 11.9 0.7 34 4.4 0.0 3.9 4 1 0 4 4 4 0 PAS fold C_GCAxxG_C_C PF09719.5 gi|219853118|ref|YP_002467550.1| - 1.6e-29 102.1 0.2 1.9e-29 101.8 0.1 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) DJ-1_PfpI PF01965.19 gi|219853119|ref|YP_002467551.1| - 1.7e-39 134.5 0.0 2e-39 134.3 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|219853119|ref|YP_002467551.1| - 1.2e-08 34.3 0.0 1.5e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|219853119|ref|YP_002467551.1| - 0.005 16.3 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|219853119|ref|YP_002467551.1| - 0.052 13.2 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 GATase_3 PF07685.9 gi|219853119|ref|YP_002467551.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Lon_C PF05362.8 gi|219853120|ref|YP_002467552.1| - 4.3e-87 290.7 0.6 7.7e-87 289.8 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.24 gi|219853120|ref|YP_002467552.1| - 1.2e-22 80.5 0.0 7e-22 78.0 0.0 2.4 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) LON PF02190.11 gi|219853120|ref|YP_002467552.1| - 1.2e-16 60.9 0.1 2.4e-16 60.0 0.1 1.5 1 0 0 1 1 1 1 ATP-dependent protease La (LON) domain ChlI PF13541.1 gi|219853120|ref|YP_002467552.1| - 9.5e-11 41.2 0.0 2.1e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|219853120|ref|YP_002467552.1| - 2.7e-08 33.6 0.0 3.6e-07 29.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|219853120|ref|YP_002467552.1| - 1.8e-05 25.5 2.0 0.00078 20.2 0.1 3.6 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|219853120|ref|YP_002467552.1| - 9.7e-05 22.4 0.5 0.001 19.0 0.3 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.9 gi|219853120|ref|YP_002467552.1| - 0.00011 22.1 0.0 0.00053 19.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|219853120|ref|YP_002467552.1| - 0.00031 19.9 0.4 0.0035 16.4 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.8 gi|219853120|ref|YP_002467552.1| - 0.00055 18.7 0.4 0.028 13.1 0.1 2.5 2 0 0 2 2 2 1 TIP49 C-terminus AAA_33 PF13671.1 gi|219853120|ref|YP_002467552.1| - 0.0011 18.8 0.1 0.0097 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|219853120|ref|YP_002467552.1| - 0.0013 18.9 0.1 0.049 13.7 0.0 2.9 1 1 0 1 1 1 1 AAA domain Birna_VP4 PF01768.11 gi|219853120|ref|YP_002467552.1| - 0.0017 17.4 0.1 0.0042 16.1 0.1 1.6 1 0 0 1 1 1 1 Birnavirus VP4 protein RuvB_N PF05496.7 gi|219853120|ref|YP_002467552.1| - 0.0017 17.4 0.1 0.007 15.4 0.0 2.0 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus Viral_helicase1 PF01443.13 gi|219853120|ref|YP_002467552.1| - 0.003 17.1 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|219853120|ref|YP_002467552.1| - 0.004 16.5 0.0 0.012 15.0 0.0 1.9 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|219853120|ref|YP_002467552.1| - 0.0069 15.9 0.0 0.034 13.7 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|219853120|ref|YP_002467552.1| - 0.014 14.9 1.2 0.036 13.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|219853120|ref|YP_002467552.1| - 0.024 14.9 8.5 0.052 13.8 0.1 4.0 3 1 1 4 4 4 0 AAA domain DUF815 PF05673.8 gi|219853120|ref|YP_002467552.1| - 0.04 12.8 0.1 0.11 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|219853120|ref|YP_002467552.1| - 0.05 12.9 0.1 0.13 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.6 gi|219853120|ref|YP_002467552.1| - 0.051 12.2 0.1 0.1 11.2 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain Rad17 PF03215.10 gi|219853120|ref|YP_002467552.1| - 0.054 12.1 0.5 0.24 10.0 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|219853120|ref|YP_002467552.1| - 0.055 13.3 0.0 0.21 11.4 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|219853120|ref|YP_002467552.1| - 0.11 12.2 1.1 0.32 10.7 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain SKI PF01202.17 gi|219853120|ref|YP_002467552.1| - 0.15 11.9 0.1 0.15 11.9 0.1 2.2 3 0 0 3 3 1 0 Shikimate kinase RNA_helicase PF00910.17 gi|219853120|ref|YP_002467552.1| - 0.18 11.9 0.0 0.51 10.5 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Torsin PF06309.6 gi|219853120|ref|YP_002467552.1| - 0.18 11.6 0.0 0.61 9.9 0.0 1.8 2 0 0 2 2 1 0 Torsin Parvo_NS1 PF01057.12 gi|219853120|ref|YP_002467552.1| - 0.2 10.4 0.0 0.39 9.5 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MarR PF01047.17 gi|219853121|ref|YP_002467553.1| - 3.1e-10 39.6 0.0 6.9e-10 38.4 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|219853121|ref|YP_002467553.1| - 2e-08 33.7 0.0 5e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|219853121|ref|YP_002467553.1| - 4.7e-07 30.0 0.0 1.1e-06 28.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain KIP1 PF07765.7 gi|219853121|ref|YP_002467553.1| - 0.00013 21.7 0.1 0.00055 19.7 0.0 2.0 1 1 1 2 2 2 1 KIP1-like protein Fe_dep_repress PF01325.14 gi|219853121|ref|YP_002467553.1| - 0.00062 19.6 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|219853121|ref|YP_002467553.1| - 0.0038 16.8 0.0 0.0086 15.7 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|219853121|ref|YP_002467553.1| - 0.0073 15.6 0.1 0.038 13.3 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|219853121|ref|YP_002467553.1| - 0.025 14.6 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PORR PF11955.3 gi|219853121|ref|YP_002467553.1| - 0.029 13.1 0.0 0.034 12.8 0.0 1.1 1 0 0 1 1 1 0 Plant organelle RNA recognition domain RAG1 PF12940.2 gi|219853121|ref|YP_002467553.1| - 0.043 12.1 0.0 0.051 11.9 0.0 1.2 1 0 0 1 1 1 0 Recombination-activation protein 1 (RAG1) RuvB_C PF05491.8 gi|219853121|ref|YP_002467553.1| - 0.065 12.8 0.2 2.2 7.9 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus ABC2_membrane PF01061.19 gi|219853122|ref|YP_002467554.1| - 1.6e-38 132.0 25.8 1.6e-38 132.0 17.9 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|219853122|ref|YP_002467554.1| - 9.1e-16 57.8 32.3 9.1e-16 57.8 22.4 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|219853122|ref|YP_002467554.1| - 4.6e-06 25.9 30.3 6.1e-06 25.5 21.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF204 PF02659.10 gi|219853122|ref|YP_002467554.1| - 0.011 15.8 0.9 0.011 15.8 0.6 4.3 3 2 2 5 5 5 0 Domain of unknown function DUF ABC_tran PF00005.22 gi|219853123|ref|YP_002467555.1| - 1.9e-34 118.9 0.0 3.3e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219853123|ref|YP_002467555.1| - 1.9e-16 60.9 0.2 1.2e-10 41.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|219853123|ref|YP_002467555.1| - 1.4e-07 30.9 0.1 3.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|219853123|ref|YP_002467555.1| - 7.8e-06 26.3 0.0 1.3e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|219853123|ref|YP_002467555.1| - 9.3e-06 26.0 0.0 2.1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|219853123|ref|YP_002467555.1| - 7.6e-05 22.1 0.5 0.00016 21.1 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|219853123|ref|YP_002467555.1| - 8.8e-05 21.9 0.0 0.0045 16.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|219853123|ref|YP_002467555.1| - 0.00021 21.5 0.0 0.0017 18.5 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|219853123|ref|YP_002467555.1| - 0.0024 17.9 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|219853123|ref|YP_002467555.1| - 0.0082 15.6 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|219853123|ref|YP_002467555.1| - 0.0092 15.2 0.0 0.15 11.2 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|219853123|ref|YP_002467555.1| - 0.012 15.7 1.2 0.075 13.1 0.4 2.5 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|219853123|ref|YP_002467555.1| - 0.023 14.1 0.0 2.3 7.5 0.0 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|219853123|ref|YP_002467555.1| - 0.086 11.4 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|219853123|ref|YP_002467555.1| - 0.14 12.0 0.0 3.7 7.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.1 gi|219853123|ref|YP_002467555.1| - 0.23 11.0 0.8 2.3 7.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain Cache_2 PF08269.6 gi|219853124|ref|YP_002467556.1| - 8.9e-10 38.4 0.0 1.7e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Cache domain DUF4066 PF13278.1 gi|219853125|ref|YP_002467557.1| - 2.6e-13 49.5 0.0 3.8e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|219853125|ref|YP_002467557.1| - 7.3e-13 48.2 0.0 9.3e-13 47.8 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family MFS_1 PF07690.11 gi|219853126|ref|YP_002467558.1| - 0.00097 17.9 3.5 0.002 16.9 2.4 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily ATG22 PF11700.3 gi|219853126|ref|YP_002467558.1| - 0.0064 15.0 0.7 0.0077 14.7 0.5 1.1 1 0 0 1 1 1 1 Vacuole effluxer Atg22 like Mucin PF01456.12 gi|219853126|ref|YP_002467558.1| - 0.01 15.6 9.4 0.015 15.0 6.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF898 PF05987.8 gi|219853126|ref|YP_002467558.1| - 0.057 12.3 2.5 0.074 11.9 1.7 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF3671 PF12420.3 gi|219853126|ref|YP_002467558.1| - 0.22 11.5 0.6 0.31 11.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function Glucodextran_B PF09136.5 gi|219853126|ref|YP_002467558.1| - 0.33 11.1 4.3 0.59 10.3 2.9 1.5 1 1 0 1 1 1 0 Glucodextranase, domain B SCAMP PF04144.8 gi|219853126|ref|YP_002467558.1| - 4 7.2 5.9 16 5.2 0.7 2.1 1 1 1 2 2 2 0 SCAMP family DUF318 PF03773.8 gi|219853127|ref|YP_002467559.1| - 2e-70 237.1 26.7 2.5e-70 236.9 18.5 1.1 1 0 0 1 1 1 1 Predicted permease ECR1_N PF14382.1 gi|219853127|ref|YP_002467559.1| - 0.22 10.8 1.7 0.59 9.4 0.2 2.2 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region Thioredoxin_3 PF13192.1 gi|219853128|ref|YP_002467560.1| - 1.2e-25 89.1 0.4 1.3e-25 89.0 0.3 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|219853128|ref|YP_002467560.1| - 0.014 15.4 0.1 0.56 10.1 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|219853128|ref|YP_002467560.1| - 0.019 15.1 0.2 0.93 9.7 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|219853128|ref|YP_002467560.1| - 0.036 14.0 0.2 0.061 13.3 0.1 1.5 1 1 0 1 1 1 0 Glutaredoxin ArsD PF06953.6 gi|219853128|ref|YP_002467560.1| - 0.072 13.2 0.0 0.08 13.1 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DGC PF08859.6 gi|219853129|ref|YP_002467561.1| - 3.4e-28 97.6 1.2 4.8e-28 97.2 0.8 1.2 1 0 0 1 1 1 1 DGC domain Metallothio_2 PF01439.13 gi|219853129|ref|YP_002467561.1| - 0.00066 20.1 0.6 0.00066 20.1 0.5 2.7 2 1 0 2 2 2 1 Metallothionein DGC PF08859.6 gi|219853130|ref|YP_002467562.1| - 1.6e-18 66.5 0.8 2e-18 66.2 0.5 1.0 1 0 0 1 1 1 1 DGC domain SBF PF01758.11 gi|219853131|ref|YP_002467563.1| - 1.9e-59 200.2 15.6 1.9e-59 200.2 10.8 2.6 2 1 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.16 gi|219853132|ref|YP_002467564.1| - 7.5e-28 97.5 0.0 8.3e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase MtrA PF04208.9 gi|219853133|ref|YP_002467565.1| - 5.5e-35 120.3 0.0 1e-34 119.5 0.0 1.4 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A LigB PF02900.13 gi|219853135|ref|YP_002467567.1| - 2.6e-59 200.4 0.1 2.9e-59 200.2 0.1 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GATase PF00117.23 gi|219853136|ref|YP_002467568.1| - 1.8e-19 69.9 0.0 2.6e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|219853136|ref|YP_002467568.1| - 3.4e-06 26.6 0.1 9.1e-06 25.2 0.0 1.7 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|219853136|ref|YP_002467568.1| - 0.021 14.4 0.0 0.041 13.4 0.0 1.5 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|219853136|ref|YP_002467568.1| - 0.022 14.2 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family HEM4 PF02602.10 gi|219853136|ref|YP_002467568.1| - 0.023 13.9 0.1 0.046 12.9 0.0 1.6 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF2387 PF09526.5 gi|219853137|ref|YP_002467569.1| - 7.5e-05 22.5 0.4 0.00013 21.8 0.3 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF951 PF06107.6 gi|219853137|ref|YP_002467569.1| - 0.0031 16.9 0.3 0.0062 16.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) DUF35_N PF12172.3 gi|219853137|ref|YP_002467569.1| - 0.011 15.5 3.7 0.17 11.8 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.7 gi|219853137|ref|YP_002467569.1| - 0.02 14.6 3.1 0.038 13.7 2.1 1.4 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation PHD PF00628.24 gi|219853137|ref|YP_002467569.1| - 0.03 14.0 2.1 0.054 13.1 1.5 1.4 1 0 0 1 1 1 0 PHD-finger Elf1 PF05129.8 gi|219853137|ref|YP_002467569.1| - 0.03 14.0 0.6 0.056 13.1 0.4 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.2 gi|219853137|ref|YP_002467569.1| - 0.044 13.5 1.7 0.08 12.7 1.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|219853137|ref|YP_002467569.1| - 0.081 13.2 1.1 0.19 12.0 0.8 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|219853137|ref|YP_002467569.1| - 0.09 12.3 0.6 0.17 11.4 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 HAS-barrel PF09378.5 gi|219853137|ref|YP_002467569.1| - 0.11 12.4 0.1 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 HAS barrel domain zf-rbx1 PF12678.2 gi|219853137|ref|YP_002467569.1| - 0.17 12.0 1.0 0.28 11.3 0.7 1.3 1 0 0 1 1 1 0 RING-H2 zinc finger ADK_lid PF05191.9 gi|219853137|ref|YP_002467569.1| - 0.39 10.4 5.4 0.57 9.9 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Prok-RING_1 PF14446.1 gi|219853137|ref|YP_002467569.1| - 0.48 10.1 5.3 1.2 8.8 3.6 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|219853137|ref|YP_002467569.1| - 0.61 10.0 4.6 4 7.4 3.2 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|219853137|ref|YP_002467569.1| - 0.7 9.5 5.5 0.7 9.5 0.0 3.0 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219853137|ref|YP_002467569.1| - 0.99 9.1 0.0 0.99 9.1 0.0 3.0 4 0 0 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|219853137|ref|YP_002467569.1| - 2.6 7.7 5.6 6.8 6.4 3.7 1.8 1 1 0 1 1 1 0 Nudix N-terminal HD PF01966.17 gi|219853138|ref|YP_002467570.1| - 2e-13 50.4 4.0 3.3e-13 49.7 0.8 2.6 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|219853138|ref|YP_002467570.1| - 0.021 14.1 0.0 0.051 12.8 0.0 1.6 1 0 0 1 1 1 0 HDOD domain UPF0052 PF01933.13 gi|219853139|ref|YP_002467571.1| - 1.1e-46 159.4 0.0 1.4e-46 159.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Oxidored_molyb PF00174.14 gi|219853140|ref|YP_002467572.1| - 5e-35 120.3 0.0 7.1e-35 119.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_B_N PF00033.14 gi|219853141|ref|YP_002467573.1| - 0.00016 21.0 3.1 0.00021 20.7 2.1 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|219853141|ref|YP_002467573.1| - 0.00032 20.1 0.7 0.00039 19.8 0.5 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.1 gi|219853141|ref|YP_002467573.1| - 0.00034 20.6 3.9 0.00046 20.2 2.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Presenilin PF01080.12 gi|219853141|ref|YP_002467573.1| - 0.12 11.2 0.4 0.12 11.1 0.3 1.1 1 0 0 1 1 1 0 Presenilin SH PF01445.12 gi|219853141|ref|YP_002467573.1| - 7.3 6.3 6.2 23 4.7 0.3 2.2 2 0 0 2 2 2 0 Viral small hydrophobic protein RNA_pol_L_2 PF13656.1 gi|219853142|ref|YP_002467574.1| - 1.9e-19 68.8 0.0 2.1e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|219853142|ref|YP_002467574.1| - 2.1e-06 26.7 0.0 2.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SseB_C PF14581.1 gi|219853142|ref|YP_002467574.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain Lactamase_B_2 PF12706.2 gi|219853143|ref|YP_002467575.1| - 2.1e-26 92.6 0.1 2.8e-26 92.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|219853143|ref|YP_002467575.1| - 6.8e-15 55.2 0.8 9.5e-15 54.7 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|219853143|ref|YP_002467575.1| - 2.6e-08 33.7 0.0 4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|219853144|ref|YP_002467576.1| - 6.8e-35 120.1 0.0 1.6e-34 118.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|219853144|ref|YP_002467576.1| - 2.2e-07 30.4 0.2 0.00081 18.8 0.0 3.2 1 1 2 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|219853144|ref|YP_002467576.1| - 8.1e-06 25.6 0.1 4.2e-05 23.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|219853144|ref|YP_002467576.1| - 0.00024 20.5 0.0 0.00052 19.4 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein RuvB_N PF05496.7 gi|219853144|ref|YP_002467576.1| - 0.00039 19.5 0.1 0.00079 18.5 0.1 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|219853144|ref|YP_002467576.1| - 0.0013 18.6 0.0 0.0052 16.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|219853144|ref|YP_002467576.1| - 0.0019 18.3 1.3 0.79 9.8 0.6 3.0 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|219853144|ref|YP_002467576.1| - 0.0065 17.2 0.6 0.038 14.7 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|219853144|ref|YP_002467576.1| - 0.0076 16.2 5.0 0.25 11.3 0.1 3.5 2 1 1 4 4 4 1 AAA ATPase domain AAA_33 PF13671.1 gi|219853144|ref|YP_002467576.1| - 0.0083 16.0 0.0 0.022 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|219853144|ref|YP_002467576.1| - 0.0089 15.6 0.1 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|219853144|ref|YP_002467576.1| - 0.014 14.6 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|219853144|ref|YP_002467576.1| - 0.018 14.6 0.0 0.041 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|219853144|ref|YP_002467576.1| - 0.019 13.7 0.0 0.041 12.5 0.0 1.5 1 1 0 1 1 1 0 TIP49 C-terminus ResIII PF04851.10 gi|219853144|ref|YP_002467576.1| - 0.029 14.2 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.18 gi|219853144|ref|YP_002467576.1| - 0.038 13.9 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|219853144|ref|YP_002467576.1| - 0.038 13.8 0.0 0.082 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|219853144|ref|YP_002467576.1| - 0.041 13.8 0.0 0.42 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|219853144|ref|YP_002467576.1| - 0.074 12.8 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF815 PF05673.8 gi|219853144|ref|YP_002467576.1| - 0.081 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|219853144|ref|YP_002467576.1| - 0.082 12.5 0.1 11 5.6 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_21 PF13304.1 gi|219853144|ref|YP_002467576.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|219853144|ref|YP_002467576.1| - 0.13 12.5 0.0 0.32 11.3 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_10 PF12846.2 gi|219853144|ref|YP_002467576.1| - 0.27 10.6 2.0 10 5.4 0.1 2.6 2 1 1 3 3 3 0 AAA-like domain Peptidase_M24 PF00557.19 gi|219853145|ref|YP_002467577.1| - 1.6e-43 148.7 0.2 1.9e-43 148.4 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|219853146|ref|YP_002467578.1| - 5e-38 130.7 0.7 6.6e-38 130.3 0.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF3671 PF12420.3 gi|219853147|ref|YP_002467579.1| - 0.012 15.5 0.4 0.014 15.3 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function IncA PF04156.9 gi|219853147|ref|YP_002467579.1| - 0.016 14.8 4.8 0.019 14.5 3.3 1.1 1 0 0 1 1 1 0 IncA protein DUF1129 PF06570.6 gi|219853147|ref|YP_002467579.1| - 0.017 14.4 1.4 0.018 14.3 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3087 PF11286.3 gi|219853147|ref|YP_002467579.1| - 0.028 13.6 0.7 0.032 13.4 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) DUF4231 PF14015.1 gi|219853147|ref|YP_002467579.1| - 0.032 14.2 0.6 0.039 13.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) YlaH PF14036.1 gi|219853147|ref|YP_002467579.1| - 0.11 12.5 2.6 0.15 12.1 1.8 1.2 1 0 0 1 1 1 0 YlaH-like protein DUF4229 PF14012.1 gi|219853147|ref|YP_002467579.1| - 0.21 11.5 5.9 0.29 11.0 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) HTH_20 PF12840.2 gi|219853148|ref|YP_002467580.1| - 0.00065 19.4 0.1 0.0012 18.5 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|219853148|ref|YP_002467580.1| - 0.00067 18.9 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|219853148|ref|YP_002467580.1| - 0.0038 16.8 0.2 0.0056 16.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|219853148|ref|YP_002467580.1| - 0.0056 16.3 0.1 0.02 14.6 0.0 2.0 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|219853148|ref|YP_002467580.1| - 0.02 14.4 0.1 0.028 13.9 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|219853148|ref|YP_002467580.1| - 0.042 13.5 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|219853148|ref|YP_002467580.1| - 0.052 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|219853148|ref|YP_002467580.1| - 0.066 13.5 0.1 0.093 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|219853148|ref|YP_002467580.1| - 0.067 13.3 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Pdase_C33_assoc PF14756.1 gi|219853148|ref|YP_002467580.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Peptidase_C33-associated domain CHASE4 PF05228.8 gi|219853149|ref|YP_002467581.1| - 1.6e-37 128.6 0.0 2.9e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 CHASE4 domain HATPase_c PF02518.21 gi|219853149|ref|YP_002467581.1| - 6.8e-22 77.2 0.0 1.2e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|219853149|ref|YP_002467581.1| - 1.9e-07 31.1 0.3 1.9e-07 31.1 0.2 2.3 2 0 0 2 2 2 1 HAMP domain PAS_9 PF13426.1 gi|219853149|ref|YP_002467581.1| - 3.2e-07 30.6 0.0 1.5e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|219853149|ref|YP_002467581.1| - 2e-06 27.7 0.5 9.4e-05 22.4 0.0 2.8 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|219853149|ref|YP_002467581.1| - 2.1e-06 27.6 4.5 2.6e-06 27.3 0.2 2.8 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|219853149|ref|YP_002467581.1| - 7.6e-06 25.6 0.0 1.8e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|219853149|ref|YP_002467581.1| - 0.00019 21.1 0.0 0.0019 17.9 0.0 2.8 3 0 0 3 3 3 1 PAS domain DUF3450 PF11932.3 gi|219853149|ref|YP_002467581.1| - 0.048 12.9 2.4 0.38 9.9 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF2328 PF10090.4 gi|219853149|ref|YP_002467581.1| - 0.049 12.8 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2328) SPOB_a PF14689.1 gi|219853149|ref|YP_002467581.1| - 0.063 12.8 0.7 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain PrmA PF06325.8 gi|219853150|ref|YP_002467582.1| - 0.011 14.8 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|219853150|ref|YP_002467582.1| - 0.011 15.6 0.2 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|219853150|ref|YP_002467582.1| - 0.041 13.2 0.1 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.13 gi|219853150|ref|YP_002467582.1| - 0.19 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Ldh_1_N PF00056.18 gi|219853151|ref|YP_002467583.1| - 2.7e-29 101.8 0.0 3.7e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|219853151|ref|YP_002467583.1| - 7.8e-28 97.3 0.0 1.1e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4C PF11975.3 gi|219853151|ref|YP_002467583.1| - 0.00024 20.9 0.2 0.00042 20.1 0.1 1.4 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Semialdhyde_dh PF01118.19 gi|219853151|ref|YP_002467583.1| - 0.0086 16.3 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Glyco_hydro_4 PF02056.11 gi|219853151|ref|YP_002467583.1| - 0.01 15.1 0.1 0.02 14.2 0.0 1.5 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase EF1_GNE PF00736.14 gi|219853152|ref|YP_002467584.1| - 2.3e-22 78.5 0.2 2.4e-22 78.3 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain P2 PF07194.6 gi|219853152|ref|YP_002467584.1| - 0.088 12.6 0.1 0.18 11.6 0.1 1.6 1 1 0 1 1 1 0 P2 response regulator binding domain DUF1610 PF07754.6 gi|219853153|ref|YP_002467585.1| - 1.4e-12 47.4 14.4 3.2e-06 27.1 2.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) C1_3 PF07649.7 gi|219853153|ref|YP_002467585.1| - 2.3e-06 27.5 9.6 0.00046 20.1 1.3 2.2 2 0 0 2 2 2 2 C1-like domain DZR PF12773.2 gi|219853153|ref|YP_002467585.1| - 0.00071 19.3 13.1 0.012 15.4 1.3 2.2 1 1 1 2 2 2 2 Double zinc ribbon DUF1272 PF06906.6 gi|219853153|ref|YP_002467585.1| - 0.00076 19.2 10.0 0.0012 18.6 6.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.7 gi|219853153|ref|YP_002467585.1| - 0.014 15.1 1.9 0.014 15.1 1.3 3.2 2 2 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS91 PF14319.1 gi|219853153|ref|YP_002467585.1| - 0.019 14.4 8.5 0.023 14.2 5.9 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-UBP PF02148.14 gi|219853153|ref|YP_002467585.1| - 0.047 13.8 3.0 0.072 13.2 0.2 2.1 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_2 PF13240.1 gi|219853153|ref|YP_002467585.1| - 0.049 13.1 16.3 0.06 12.8 2.0 3.2 2 1 1 3 3 3 0 zinc-ribbon domain FYVE_2 PF02318.11 gi|219853153|ref|YP_002467585.1| - 0.081 12.8 5.3 0.086 12.7 3.7 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger A2L_zn_ribbon PF08792.5 gi|219853153|ref|YP_002467585.1| - 0.26 10.7 11.1 2 7.9 0.0 3.7 2 1 1 3 3 3 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|219853153|ref|YP_002467585.1| - 0.3 10.7 10.5 0.13 11.8 0.9 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain PolC_DP2 PF03833.8 gi|219853153|ref|YP_002467585.1| - 0.46 8.0 5.9 0.49 7.9 4.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_5 PF14634.1 gi|219853153|ref|YP_002467585.1| - 0.74 9.5 11.7 1 9.1 2.3 2.3 2 1 0 2 2 2 0 zinc-RING finger domain zinc-ribbons_6 PF07191.7 gi|219853153|ref|YP_002467585.1| - 0.84 9.4 11.9 10 5.9 8.3 2.1 1 1 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|219853153|ref|YP_002467585.1| - 0.87 9.3 10.3 0.98 9.2 2.0 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nop10p PF04135.7 gi|219853153|ref|YP_002467585.1| - 1.7 8.4 4.2 4.6 7.0 1.0 2.2 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|219853153|ref|YP_002467585.1| - 1.8 7.8 14.8 7 5.9 0.1 3.8 2 1 1 3 3 3 0 zinc-ribbon domain zf-B_box PF00643.19 gi|219853153|ref|YP_002467585.1| - 2.6 8.0 11.4 1 9.2 1.8 2.8 2 1 0 2 2 2 0 B-box zinc finger UPF0547 PF10571.4 gi|219853153|ref|YP_002467585.1| - 4.9 6.9 18.1 6.5 6.5 0.2 4.1 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.7 gi|219853153|ref|YP_002467585.1| - 5.9 6.7 11.2 1.8 8.4 1.0 2.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Tnp_zf-ribbon_2 PF13842.1 gi|219853153|ref|YP_002467585.1| - 7.3 7.0 14.8 10 6.6 3.1 3.0 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-HIT PF04438.11 gi|219853153|ref|YP_002467585.1| - 8.5 6.1 16.7 1.6 8.4 2.4 3.2 2 1 1 3 3 3 0 HIT zinc finger AA_kinase PF00696.23 gi|219853154|ref|YP_002467586.1| - 8.1e-09 35.3 0.0 0.0001 21.9 0.0 2.2 1 1 1 2 2 2 2 Amino acid kinase family Ribonuc_red_lgC PF02867.10 gi|219853155|ref|YP_002467587.1| - 1.6e-144 482.4 0.0 1.4e-102 344.0 0.0 3.1 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|219853155|ref|YP_002467587.1| - 8.9e-18 64.0 0.1 2e-17 62.9 0.1 1.6 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|219853155|ref|YP_002467587.1| - 3.4e-15 55.6 0.0 6.8e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain C1_1 PF00130.17 gi|219853155|ref|YP_002467587.1| - 0.074 12.7 5.0 0.23 11.2 3.5 1.8 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PLDc_2 PF13091.1 gi|219853156|ref|YP_002467588.1| - 4e-35 120.2 0.0 1.3e-16 60.4 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|219853156|ref|YP_002467588.1| - 1.5e-07 31.0 1.5 0.011 15.5 0.3 2.8 2 0 0 2 2 2 2 Phospholipase D Active site motif HTH_23 PF13384.1 gi|219853157|ref|YP_002467589.1| - 6.8e-06 25.5 0.1 1.6e-05 24.4 0.0 1.6 2 0 0 2 2 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|219853157|ref|YP_002467589.1| - 8.8e-06 25.4 0.2 1.9e-05 24.4 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|219853157|ref|YP_002467589.1| - 1.6e-05 24.5 0.0 2.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|219853157|ref|YP_002467589.1| - 0.00025 20.3 0.1 0.00041 19.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|219853157|ref|YP_002467589.1| - 0.00029 20.7 0.0 0.00038 20.3 0.0 1.2 1 0 0 1 1 1 1 Transposase Sigma70_r4_2 PF08281.7 gi|219853157|ref|YP_002467589.1| - 0.00031 20.1 0.1 0.00061 19.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|219853157|ref|YP_002467589.1| - 0.00052 20.1 0.2 0.00098 19.2 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|219853157|ref|YP_002467589.1| - 0.00099 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|219853157|ref|YP_002467589.1| - 0.0013 18.7 0.1 0.002 18.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|219853157|ref|YP_002467589.1| - 0.0024 17.6 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|219853157|ref|YP_002467589.1| - 0.0028 17.2 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.2 gi|219853157|ref|YP_002467589.1| - 0.0028 17.8 0.3 0.021 15.0 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|219853157|ref|YP_002467589.1| - 0.0051 16.3 0.2 0.0082 15.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|219853157|ref|YP_002467589.1| - 0.0083 16.3 0.6 0.26 11.5 0.0 2.4 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Phage_NinH PF06322.6 gi|219853157|ref|YP_002467589.1| - 0.01 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein HTH_19 PF12844.2 gi|219853157|ref|YP_002467589.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|219853157|ref|YP_002467589.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_29 PF13551.1 gi|219853157|ref|YP_002467589.1| - 0.029 14.5 0.1 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.10 gi|219853157|ref|YP_002467589.1| - 0.032 14.0 0.1 0.057 13.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_1 PF00126.22 gi|219853157|ref|YP_002467589.1| - 0.037 13.7 0.2 0.066 12.9 0.1 1.4 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family KorB PF08535.5 gi|219853157|ref|YP_002467589.1| - 0.044 13.9 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 KorB domain Fe_dep_repress PF01325.14 gi|219853157|ref|YP_002467589.1| - 0.05 13.5 0.1 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF134 PF02001.11 gi|219853157|ref|YP_002467589.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_20 PF12840.2 gi|219853157|ref|YP_002467589.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|219853157|ref|YP_002467589.1| - 0.072 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_Tc3_1 PF11427.3 gi|219853157|ref|YP_002467589.1| - 0.08 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase Cro PF09048.5 gi|219853157|ref|YP_002467589.1| - 0.082 12.5 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_IclR PF09339.5 gi|219853157|ref|YP_002467589.1| - 0.089 12.3 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|219853157|ref|YP_002467589.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease P22_Cro PF14549.1 gi|219853157|ref|YP_002467589.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_22 PF13309.1 gi|219853157|ref|YP_002467589.1| - 0.15 11.8 0.1 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 HTH domain MarR PF01047.17 gi|219853158|ref|YP_002467590.1| - 0.00018 21.1 0.0 0.0002 20.9 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|219853158|ref|YP_002467590.1| - 0.00042 19.9 0.0 0.00054 19.5 0.0 1.1 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|219853158|ref|YP_002467590.1| - 0.0032 16.9 0.1 0.0058 16.1 0.1 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_12 PF08461.5 gi|219853158|ref|YP_002467590.1| - 0.012 15.3 0.1 0.051 13.3 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|219853158|ref|YP_002467590.1| - 0.025 13.9 0.0 0.052 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.7 gi|219853158|ref|YP_002467590.1| - 0.028 13.9 0.1 0.036 13.6 0.0 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|219853158|ref|YP_002467590.1| - 0.03 13.9 0.1 0.043 13.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|219853158|ref|YP_002467590.1| - 0.03 14.1 0.1 0.047 13.4 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|219853158|ref|YP_002467590.1| - 0.046 14.0 0.0 0.051 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|219853158|ref|YP_002467590.1| - 0.14 12.0 0.1 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain tRNA_anti-codon PF01336.20 gi|219853159|ref|YP_002467591.1| - 0.00036 20.3 1.0 0.0012 18.6 0.7 1.8 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain TOBE_2 PF08402.5 gi|219853159|ref|YP_002467591.1| - 0.0054 16.7 0.1 0.01 15.7 0.1 1.5 1 0 0 1 1 1 1 TOBE domain tRNA_anti-like PF12869.2 gi|219853159|ref|YP_002467591.1| - 0.006 16.0 0.7 0.006 16.0 0.5 1.6 1 1 1 2 2 2 1 tRNA_anti-like DUF4131 PF13567.1 gi|219853159|ref|YP_002467591.1| - 0.013 14.9 0.3 0.019 14.3 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) FLgD_tudor PF13861.1 gi|219853159|ref|YP_002467591.1| - 0.052 13.5 0.2 0.082 12.9 0.2 1.5 1 0 0 1 1 1 0 FlgD Tudor-like domain GAF_2 PF13185.1 gi|219853160|ref|YP_002467592.1| - 3.1e-14 53.6 0.5 1.1e-13 51.8 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|219853160|ref|YP_002467592.1| - 2e-12 47.3 0.0 0.0012 19.1 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|219853160|ref|YP_002467592.1| - 2.7e-12 46.6 0.8 3.8e-07 30.1 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|219853160|ref|YP_002467592.1| - 9.5e-09 34.8 0.0 0.00023 20.8 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|219853160|ref|YP_002467592.1| - 0.00043 20.0 0.0 0.058 13.1 0.0 2.6 2 0 0 2 2 2 1 PAS fold FAM212 PF15342.1 gi|219853160|ref|YP_002467592.1| - 0.058 13.0 0.0 0.2 11.2 0.0 1.9 1 0 0 1 1 1 0 FAM212 family PAS_3 PF08447.6 gi|219853160|ref|YP_002467592.1| - 0.094 12.8 0.0 0.46 10.6 0.0 2.1 2 0 0 2 2 2 0 PAS fold MscL PF01741.13 gi|219853161|ref|YP_002467593.1| - 2.8e-14 53.3 5.4 3.1e-14 53.2 3.8 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF4514 PF14986.1 gi|219853161|ref|YP_002467593.1| - 0.0052 16.5 1.9 0.051 13.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4514) Sensor PF13796.1 gi|219853161|ref|YP_002467593.1| - 0.22 11.0 4.3 0.28 10.7 3.0 1.1 1 0 0 1 1 1 0 Putative sensor TraL PF07178.6 gi|219853161|ref|YP_002467593.1| - 0.23 11.4 2.7 7.7 6.6 0.1 2.1 2 0 0 2 2 2 0 TraL protein CAAD PF14159.1 gi|219853161|ref|YP_002467593.1| - 0.26 10.9 4.1 0.43 10.2 0.7 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF2061 PF09834.4 gi|219853161|ref|YP_002467593.1| - 0.83 9.8 4.7 8.8 6.6 0.0 2.6 2 1 1 3 3 3 0 Predicted membrane protein (DUF2061) DUF457 PF04307.9 gi|219853161|ref|YP_002467593.1| - 0.96 8.7 6.6 1.9 7.8 4.6 1.5 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Cohesin PF00963.13 gi|219853162|ref|YP_002467594.1| - 7.2e-06 25.9 4.0 7.2e-06 25.9 2.8 2.2 2 1 0 2 2 2 1 Cohesin domain Y_Y_Y PF07495.8 gi|219853162|ref|YP_002467594.1| - 0.051 13.3 0.4 0.29 10.9 0.2 2.3 2 0 0 2 2 2 0 Y_Y_Y domain DUF3467 PF11950.3 gi|219853163|ref|YP_002467595.1| - 5.8e-18 64.6 0.0 6.9e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DHquinase_I PF01487.10 gi|219853164|ref|YP_002467596.1| - 3.7e-37 128.1 0.0 4e-37 128.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Chorismate_synt PF01264.16 gi|219853165|ref|YP_002467597.1| - 5.8e-129 429.4 5.2 2.9e-125 417.3 3.6 2.0 1 1 0 1 1 1 1 Chorismate synthase SKI PF01202.17 gi|219853166|ref|YP_002467598.1| - 1e-34 119.6 0.0 1.6e-34 119.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.6 gi|219853166|ref|YP_002467598.1| - 1e-24 86.4 0.0 1.9e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|219853166|ref|YP_002467598.1| - 2e-11 44.1 0.0 3.1e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AAA_17 PF13207.1 gi|219853166|ref|YP_002467598.1| - 2.7e-05 24.9 0.0 5.4e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219853166|ref|YP_002467598.1| - 0.00019 21.7 0.0 0.00039 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain FAD_binding_2 PF00890.19 gi|219853166|ref|YP_002467598.1| - 0.03 13.1 0.2 0.053 12.3 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|219853166|ref|YP_002467598.1| - 0.033 13.3 0.0 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoaE PF01121.15 gi|219853166|ref|YP_002467598.1| - 0.065 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_28 PF13521.1 gi|219853166|ref|YP_002467598.1| - 0.093 12.6 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NAD_binding_8 PF13450.1 gi|219853166|ref|YP_002467598.1| - 0.11 12.5 0.4 0.24 11.4 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|219853166|ref|YP_002467598.1| - 0.12 12.7 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AAA_33 PF13671.1 gi|219853166|ref|YP_002467598.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|219853166|ref|YP_002467598.1| - 0.18 11.7 0.0 0.45 10.4 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase-like family EPSP_synthase PF00275.15 gi|219853167|ref|YP_002467599.1| - 5.8e-107 357.7 0.0 6.5e-107 357.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PDT PF00800.13 gi|219853168|ref|YP_002467600.1| - 1.9e-40 138.3 0.0 2.5e-40 137.9 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|219853168|ref|YP_002467600.1| - 1.1e-07 31.1 0.0 2.4e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 ACT domain PDH PF02153.12 gi|219853169|ref|YP_002467601.1| - 3.4e-40 137.5 0.0 4.3e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|219853169|ref|YP_002467601.1| - 9.8e-05 22.2 0.6 0.0062 16.3 0.4 2.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|219853169|ref|YP_002467601.1| - 0.00017 21.3 0.4 0.018 14.7 0.1 2.3 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|219853169|ref|YP_002467601.1| - 0.00054 20.3 1.8 0.067 13.6 0.1 2.5 1 1 1 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|219853169|ref|YP_002467601.1| - 0.0034 16.5 0.0 0.0066 15.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|219853169|ref|YP_002467601.1| - 0.011 15.0 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|219853169|ref|YP_002467601.1| - 0.012 15.3 1.6 0.33 10.6 0.0 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|219853169|ref|YP_002467601.1| - 0.025 14.0 0.3 0.73 9.2 0.1 2.3 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA DUF938 PF06080.7 gi|219853169|ref|YP_002467601.1| - 0.099 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Epimerase PF01370.16 gi|219853169|ref|YP_002467601.1| - 0.12 11.7 0.0 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family DHQS PF01959.11 gi|219853170|ref|YP_002467602.1| - 2.2e-119 398.3 1.4 2.5e-119 398.0 1.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) DeoC PF01791.4 gi|219853171|ref|YP_002467603.1| - 8.9e-48 162.6 0.1 1e-47 162.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|219853171|ref|YP_002467603.1| - 0.036 13.2 1.3 1.7 7.8 0.5 2.8 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.4 gi|219853172|ref|YP_002467604.1| - 2.3e-50 171.0 0.0 2.8e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|219853172|ref|YP_002467604.1| - 0.044 13.0 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel UPF0118 PF01594.11 gi|219853173|ref|YP_002467605.1| - 5.2e-38 130.8 42.4 6.5e-38 130.5 29.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 TrmB PF01978.14 gi|219853174|ref|YP_002467606.1| - 1.1e-17 63.4 0.1 2.3e-17 62.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|219853174|ref|YP_002467606.1| - 0.0027 17.4 0.1 0.023 14.4 0.0 2.6 1 1 2 3 3 3 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|219853174|ref|YP_002467606.1| - 0.0036 17.2 0.0 0.014 15.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|219853174|ref|YP_002467606.1| - 0.0051 16.6 0.0 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|219853174|ref|YP_002467606.1| - 0.02 14.2 0.5 0.48 9.8 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|219853174|ref|YP_002467606.1| - 0.057 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|219853174|ref|YP_002467606.1| - 0.088 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|219853174|ref|YP_002467606.1| - 0.093 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_20 PF12840.2 gi|219853174|ref|YP_002467606.1| - 0.11 12.3 0.0 0.48 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Lant_dehyd_C PF04738.8 gi|219853174|ref|YP_002467606.1| - 0.11 10.7 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, C terminus Rrf2 PF02082.15 gi|219853174|ref|YP_002467606.1| - 0.11 12.5 0.0 0.35 11.0 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator MFS_1 PF07690.11 gi|219853175|ref|YP_002467607.1| - 1.4e-37 129.2 86.2 8.2e-32 110.2 35.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219853175|ref|YP_002467607.1| - 4e-12 45.4 41.5 3.3e-07 29.2 9.2 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|219853175|ref|YP_002467607.1| - 1.7 6.6 26.9 0.3 9.1 6.4 2.4 3 0 0 3 3 3 0 Transmembrane secretion effector DUF159 PF02586.9 gi|219853176|ref|YP_002467608.1| - 3.3e-55 186.8 0.0 3.6e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 CBM_6 PF03422.10 gi|219853178|ref|YP_002467610.1| - 7.9e-23 80.9 2.9 1.1e-22 80.4 0.6 2.4 2 0 0 2 2 2 1 Carbohydrate binding module (family 6) Lipase_GDSL_2 PF13472.1 gi|219853178|ref|YP_002467610.1| - 2.1e-18 67.0 0.2 3.3e-18 66.4 0.2 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|219853178|ref|YP_002467610.1| - 5.7e-18 65.5 0.8 8.6e-18 65.0 0.5 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|219853178|ref|YP_002467610.1| - 4.5e-06 26.5 0.1 1.1e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family EF-hand_1 PF00036.27 gi|219853178|ref|YP_002467610.1| - 0.0027 16.8 12.6 0.027 13.7 0.1 3.7 4 0 0 4 4 4 2 EF hand ETS_PEA3_N PF04621.8 gi|219853178|ref|YP_002467610.1| - 0.16 11.1 0.7 0.27 10.4 0.5 1.2 1 0 0 1 1 1 0 PEA3 subfamily ETS-domain transcription factor N terminal domain EF-hand_6 PF13405.1 gi|219853178|ref|YP_002467610.1| - 0.17 11.8 10.2 0.52 10.3 0.1 3.4 3 1 0 3 3 3 0 EF-hand domain EF-hand_7 PF13499.1 gi|219853178|ref|YP_002467610.1| - 0.38 10.9 4.8 2.4 8.3 0.9 3.2 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219853178|ref|YP_002467610.1| - 0.45 10.1 9.6 0.36 10.4 0.2 3.2 3 0 0 3 3 3 0 EF-hand domain pair TIR_2 PF13676.1 gi|219853179|ref|YP_002467611.1| - 5.3e-06 26.5 0.0 5.6e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 TIR domain TPR_12 PF13424.1 gi|219853180|ref|YP_002467612.1| - 7.9e-23 80.2 14.9 1.2e-08 34.7 0.4 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|219853180|ref|YP_002467612.1| - 1e-15 57.0 22.2 0.01 15.7 0.3 7.2 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_4 PF07721.9 gi|219853180|ref|YP_002467612.1| - 2e-14 52.4 23.6 0.016 15.5 0.2 7.8 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|219853180|ref|YP_002467612.1| - 5.4e-10 38.4 11.6 0.059 13.3 0.0 7.7 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|219853180|ref|YP_002467612.1| - 8.9e-09 34.5 7.7 0.03 13.9 0.1 7.3 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|219853180|ref|YP_002467612.1| - 9.6e-08 32.0 18.0 0.42 11.3 0.0 7.4 4 2 3 7 7 7 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|219853180|ref|YP_002467612.1| - 2.1e-07 30.1 6.3 0.15 11.9 0.0 7.5 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|219853180|ref|YP_002467612.1| - 2.4e-07 30.0 15.2 1.7 8.6 0.3 9.7 6 5 3 10 10 10 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|219853180|ref|YP_002467612.1| - 3.2e-07 29.9 10.5 0.0033 17.0 0.7 5.3 3 3 2 5 5 5 2 TPR repeat PPR_3 PF13812.1 gi|219853180|ref|YP_002467612.1| - 8.1e-05 22.6 4.3 8.8 6.8 0.0 5.7 5 0 0 5 5 5 0 Pentatricopeptide repeat domain Apc5 PF12862.2 gi|219853180|ref|YP_002467612.1| - 9.4e-05 22.1 1.4 2.7 7.9 0.0 4.0 2 1 1 3 3 3 2 Anaphase-promoting complex subunit 5 TPR_16 PF13432.1 gi|219853180|ref|YP_002467612.1| - 0.0018 18.9 17.9 0.036 14.7 1.1 5.3 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|219853180|ref|YP_002467612.1| - 0.0087 15.1 0.4 1.6 7.6 0.1 3.8 3 1 1 4 4 4 1 Tetratricopeptide repeat Phage_base_V PF04717.7 gi|219853180|ref|YP_002467612.1| - 0.019 14.8 0.0 12 5.8 0.0 3.6 4 0 0 4 4 3 0 Phage-related baseplate assembly protein PPR PF01535.15 gi|219853180|ref|YP_002467612.1| - 0.043 13.8 5.9 70 3.7 0.0 5.5 6 0 0 6 6 6 0 PPR repeat Snf7 PF03357.16 gi|219853180|ref|YP_002467612.1| - 0.077 12.3 1.0 0.29 10.5 0.0 2.4 2 1 1 3 3 3 0 Snf7 TPR_19 PF14559.1 gi|219853180|ref|YP_002467612.1| - 0.089 13.1 14.8 0.094 13.0 1.0 4.8 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|219853180|ref|YP_002467612.1| - 1.1 9.8 10.0 4.4 7.9 0.0 5.1 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|219853180|ref|YP_002467612.1| - 1.6 9.0 14.0 9.1 6.7 0.1 5.9 7 0 0 7 7 6 0 Tetratricopeptide repeat PPR_1 PF12854.2 gi|219853180|ref|YP_002467612.1| - 7.5 6.1 12.7 6.7 6.2 0.2 4.8 5 0 0 5 5 5 0 PPR repeat CbiM PF01891.11 gi|219853181|ref|YP_002467613.1| - 6.5e-56 189.1 28.4 7.3e-56 189.0 19.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF2109 PF09882.4 gi|219853181|ref|YP_002467613.1| - 0.029 14.3 0.6 0.029 14.3 0.4 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2109) PDGLE PF13190.1 gi|219853182|ref|YP_002467614.1| - 8e-17 60.7 1.1 9.4e-17 60.4 0.7 1.1 1 0 0 1 1 1 1 PDGLE domain FixH PF05751.6 gi|219853182|ref|YP_002467614.1| - 0.11 12.3 0.3 0.16 11.7 0.2 1.2 1 0 0 1 1 1 0 FixH Gram_pos_anchor PF00746.16 gi|219853182|ref|YP_002467614.1| - 1.7 8.5 8.4 3.4 7.6 0.2 2.2 2 0 0 2 2 2 0 Gram positive anchor PIRT PF15099.1 gi|219853182|ref|YP_002467614.1| - 1.7 7.8 5.6 0.72 9.0 0.5 2.0 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family SWIB PF02201.13 gi|219853183|ref|YP_002467615.1| - 0.061 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 SWIB/MDM2 domain peroxidase PF00141.18 gi|219853184|ref|YP_002467616.1| - 5.2e-89 297.6 0.0 5.2e-48 163.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Radical_SAM PF04055.16 gi|219853185|ref|YP_002467617.1| - 2.4e-20 73.3 0.0 4.3e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|219853185|ref|YP_002467617.1| - 8.9e-10 38.7 0.9 2.1e-09 37.5 0.6 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|219853185|ref|YP_002467617.1| - 5e-08 33.1 0.1 1e-07 32.1 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|219853185|ref|YP_002467617.1| - 4e-06 26.8 0.0 4e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Hydrolase PF00702.21 gi|219853185|ref|YP_002467617.1| - 0.076 13.4 0.1 57 4.0 0.0 3.0 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.1 gi|219853186|ref|YP_002467618.1| - 9.6e-11 41.0 0.4 2e-10 40.0 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|219853186|ref|YP_002467618.1| - 1.4e-05 24.3 2.7 4.3e-05 22.8 0.4 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.6 gi|219853186|ref|YP_002467618.1| - 0.024 13.9 0.2 0.073 12.4 0.1 1.8 1 1 0 1 1 1 0 CodY helix-turn-helix domain Rep_fac_C PF08542.6 gi|219853186|ref|YP_002467618.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Replication factor C C-terminal domain DUF3791 PF12668.2 gi|219853186|ref|YP_002467618.1| - 0.11 12.0 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) HTH_AsnC-type PF13404.1 gi|219853187|ref|YP_002467619.1| - 1.2e-08 34.2 0.1 7.7e-08 31.7 0.0 2.3 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|219853187|ref|YP_002467619.1| - 0.00018 20.8 1.8 0.00042 19.6 0.2 2.4 3 1 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|219853187|ref|YP_002467619.1| - 0.00049 20.3 0.0 0.00087 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|219853187|ref|YP_002467619.1| - 0.0015 18.1 0.1 0.0032 17.1 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|219853187|ref|YP_002467619.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|219853187|ref|YP_002467619.1| - 0.027 14.1 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|219853187|ref|YP_002467619.1| - 0.035 13.7 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 HTH domain DUF4423 PF14394.1 gi|219853187|ref|YP_002467619.1| - 0.053 13.0 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Radical_SAM PF04055.16 gi|219853188|ref|YP_002467620.1| - 1.3e-26 93.7 0.0 1.9e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|219853188|ref|YP_002467620.1| - 4.6e-12 46.0 0.0 1e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219853188|ref|YP_002467620.1| - 8.7e-12 45.3 0.0 1.5e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|219853188|ref|YP_002467620.1| - 8.2e-09 35.6 0.1 1.9e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain NHL PF01436.16 gi|219853189|ref|YP_002467621.1| - 1.8e-117 377.7 41.1 6.3e-11 41.6 0.0 12.5 12 0 0 12 12 12 12 NHL repeat SBBP PF06739.6 gi|219853189|ref|YP_002467621.1| - 2e-38 129.8 69.1 0.0011 18.7 1.1 12.7 12 0 0 12 12 12 11 Beta-propeller repeat SGL PF08450.7 gi|219853189|ref|YP_002467621.1| - 2.5e-32 112.1 27.3 0.00054 19.4 0.5 11.3 3 2 5 10 10 10 9 SMP-30/Gluconolaconase/LRE-like region PKD PF00801.15 gi|219853189|ref|YP_002467621.1| - 3.9e-27 93.7 34.6 1.8e-09 37.2 4.8 3.9 3 0 0 3 3 3 3 PKD domain SdiA-regulated PF06977.6 gi|219853189|ref|YP_002467621.1| - 8.1e-11 41.3 12.4 0.27 10.1 0.0 10.3 5 4 6 12 12 12 4 SdiA-regulated EF-hand_1 PF00036.27 gi|219853189|ref|YP_002467621.1| - 3.7e-05 22.7 2.4 0.052 12.8 0.1 3.4 2 0 0 2 2 2 2 EF hand Crystall_2 PF09076.5 gi|219853189|ref|YP_002467621.1| - 0.00051 19.7 15.5 2.2 8.1 0.2 6.5 6 0 0 6 6 6 3 Beta/Gamma crystallin EF-hand_6 PF13405.1 gi|219853189|ref|YP_002467621.1| - 0.002 17.8 1.4 0.6 10.1 0.0 3.2 2 0 0 2 2 2 1 EF-hand domain MRJP PF03022.11 gi|219853189|ref|YP_002467621.1| - 0.0052 16.0 0.0 12 5.0 0.0 4.7 5 2 0 6 6 6 0 Major royal jelly protein Gelsolin PF00626.17 gi|219853189|ref|YP_002467621.1| - 0.035 13.7 0.2 17 5.1 0.0 4.1 4 0 0 4 4 4 0 Gelsolin repeat DUF3446 PF11928.3 gi|219853189|ref|YP_002467621.1| - 0.37 11.0 4.8 4.9 7.4 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3446) DUF346 PF03984.8 gi|219853189|ref|YP_002467621.1| - 0.41 10.1 22.0 0.59 9.6 1.5 4.2 3 0 0 3 3 3 0 Repeat of unknown function (DUF346) EF-hand_8 PF13833.1 gi|219853189|ref|YP_002467621.1| - 0.49 10.0 3.7 1.8 8.2 0.2 2.5 2 0 0 2 2 2 0 EF-hand domain pair NHL PF01436.16 gi|219853190|ref|YP_002467622.1| - 7.7e-54 177.0 18.6 7.4e-09 35.1 0.1 6.5 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.6 gi|219853190|ref|YP_002467622.1| - 1.2e-23 82.5 19.2 0.00039 20.1 0.1 6.6 6 0 0 6 6 6 6 Beta-propeller repeat SGL PF08450.7 gi|219853190|ref|YP_002467622.1| - 2.1e-22 79.6 10.7 0.00021 20.7 0.0 6.2 1 1 5 6 6 6 5 SMP-30/Gluconolaconase/LRE-like region SdiA-regulated PF06977.6 gi|219853190|ref|YP_002467622.1| - 5.1e-10 38.7 2.1 0.12 11.2 0.1 5.6 4 1 2 6 6 6 2 SdiA-regulated Reg_prop PF07494.6 gi|219853190|ref|YP_002467622.1| - 0.00036 20.2 2.2 9.1 6.6 0.1 5.9 6 0 0 6 6 6 0 Two component regulator propeller EF-hand_1 PF00036.27 gi|219853190|ref|YP_002467622.1| - 0.00067 18.7 5.5 0.3 10.4 0.3 2.8 3 0 0 3 3 3 2 EF hand Tachylectin PF14517.1 gi|219853190|ref|YP_002467622.1| - 0.00094 18.5 8.7 0.008 15.5 5.0 3.0 1 1 1 2 2 2 1 Tachylectin EF-hand_6 PF13405.1 gi|219853190|ref|YP_002467622.1| - 0.0012 18.4 0.8 1.6 8.8 0.0 2.7 2 0 0 2 2 2 2 EF-hand domain Ldl_recept_b PF00058.12 gi|219853190|ref|YP_002467622.1| - 0.0035 17.6 0.0 8.3 6.8 0.0 4.3 5 1 0 5 5 4 0 Low-density lipoprotein receptor repeat class B Poly_export PF02563.11 gi|219853190|ref|YP_002467622.1| - 0.004 16.8 9.7 1.3 8.8 0.1 5.2 3 2 1 4 4 4 1 Polysaccharide biosynthesis/export protein US22 PF02393.11 gi|219853190|ref|YP_002467622.1| - 0.014 15.3 0.4 43 4.1 0.0 4.6 6 0 0 6 6 6 0 US22 like Cytotoxic PF09000.5 gi|219853190|ref|YP_002467622.1| - 0.015 15.3 0.0 1.9 8.5 0.0 3.1 1 1 2 3 3 3 0 Cytotoxic DPPIV_N PF00930.16 gi|219853190|ref|YP_002467622.1| - 0.034 12.7 0.2 0.034 12.7 0.2 2.5 4 0 0 4 4 4 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Qn_am_d_aIV PF09100.5 gi|219853190|ref|YP_002467622.1| - 0.037 13.7 1.0 0.31 10.7 0.0 2.7 3 0 0 3 3 3 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV Death_2 PF14786.1 gi|219853190|ref|YP_002467622.1| - 0.091 12.4 0.0 31 4.2 0.0 3.5 1 1 3 4 4 4 0 Tube Death domain EF-hand_8 PF13833.1 gi|219853190|ref|YP_002467622.1| - 0.13 11.8 5.5 0.45 10.1 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_7 PF13499.1 gi|219853190|ref|YP_002467622.1| - 0.32 11.1 3.3 4.9 7.3 0.2 2.7 3 0 0 3 3 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219853190|ref|YP_002467622.1| - 0.85 9.0 7.5 5.5 6.5 0.7 2.8 2 0 0 2 2 2 0 EF hand NUMOD1 PF07453.8 gi|219853190|ref|YP_002467622.1| - 1.8 8.5 6.4 72 3.4 0.0 4.1 4 0 0 4 4 4 0 NUMOD1 domain Beta-lactamase PF00144.19 gi|219853191|ref|YP_002467623.1| - 7.7e-58 196.0 0.4 1.1e-57 195.5 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase DUF3471 PF11954.3 gi|219853191|ref|YP_002467623.1| - 1.5e-10 40.8 0.0 3.4e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3471) MCPsignal PF00015.16 gi|219853192|ref|YP_002467624.1| - 1.8e-47 161.6 28.0 1.8e-47 161.6 19.4 4.5 2 2 2 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.5 gi|219853192|ref|YP_002467624.1| - 4.3e-15 55.6 0.0 1.3e-14 54.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|219853192|ref|YP_002467624.1| - 1e-09 38.6 0.0 2.6e-09 37.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|219853192|ref|YP_002467624.1| - 2.6e-07 30.4 0.0 6e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold Med29 PF11568.3 gi|219853192|ref|YP_002467624.1| - 0.007 16.4 0.0 1.2 9.1 0.0 2.9 1 1 2 3 3 3 1 Mediator complex subunit 29 Med2 PF11214.3 gi|219853192|ref|YP_002467624.1| - 0.0082 16.1 0.3 1.1 9.3 0.0 4.2 4 2 0 4 4 4 1 Mediator complex subunit 2 PAS_8 PF13188.1 gi|219853192|ref|YP_002467624.1| - 0.0093 15.8 0.0 0.03 14.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain DUF948 PF06103.6 gi|219853192|ref|YP_002467624.1| - 0.029 14.2 23.2 1.4 8.8 0.3 7.6 6 2 2 8 8 8 0 Bacterial protein of unknown function (DUF948) PAS_10 PF13596.1 gi|219853192|ref|YP_002467624.1| - 0.045 14.0 0.0 0.33 11.2 0.0 2.5 2 0 0 2 2 2 0 PAS domain DUF4134 PF13572.1 gi|219853192|ref|YP_002467624.1| - 0.047 13.8 1.8 0.28 11.3 0.1 3.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4134) Baculo_PEP_C PF04513.7 gi|219853192|ref|YP_002467624.1| - 0.22 11.3 35.5 0.12 12.2 0.6 5.7 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.6 gi|219853192|ref|YP_002467624.1| - 0.23 11.3 9.2 24 4.8 1.1 5.2 4 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 CK2S PF15011.1 gi|219853192|ref|YP_002467624.1| - 0.47 10.2 5.3 11 5.8 0.1 4.4 2 1 2 4 4 4 0 Casein Kinase 2 substrate HAUS-augmin3 PF14932.1 gi|219853192|ref|YP_002467624.1| - 2.6 7.1 9.3 8.4 5.4 0.7 3.0 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 DUF2203 PF09969.4 gi|219853192|ref|YP_002467624.1| - 3.4 7.9 8.5 3.2 7.9 0.7 3.3 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF3829 PF12889.2 gi|219853192|ref|YP_002467624.1| - 4 6.5 11.1 1.3 8.2 0.1 3.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3829) Laminin_II PF06009.7 gi|219853192|ref|YP_002467624.1| - 4.3 7.0 31.1 0.98 9.1 2.0 6.0 6 2 0 7 7 7 0 Laminin Domain II CheW PF01584.14 gi|219853193|ref|YP_002467625.1| - 1e-27 96.3 0.8 1.2e-27 96.0 0.5 1.1 1 0 0 1 1 1 1 CheW-like domain HxlR PF01638.12 gi|219853195|ref|YP_002467627.1| - 6e-20 70.6 0.0 6.9e-20 70.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|219853195|ref|YP_002467627.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|219853195|ref|YP_002467627.1| - 0.0017 17.6 0.4 0.026 13.8 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|219853195|ref|YP_002467627.1| - 0.025 14.3 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|219853195|ref|YP_002467627.1| - 0.059 13.1 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|219853195|ref|YP_002467627.1| - 0.11 12.2 0.5 1.6 8.4 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|219853195|ref|YP_002467627.1| - 0.13 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain E1-E2_ATPase PF00122.15 gi|219853196|ref|YP_002467628.1| - 3e-52 176.9 0.4 3e-52 176.9 0.3 2.6 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.21 gi|219853196|ref|YP_002467628.1| - 2.7e-47 161.9 4.8 2.7e-47 161.9 3.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|219853196|ref|YP_002467628.1| - 1.6e-18 67.5 0.7 3.4e-18 66.5 0.1 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|219853196|ref|YP_002467628.1| - 9.2e-05 22.1 1.5 0.0057 16.2 0.4 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|219853196|ref|YP_002467628.1| - 0.074 12.9 0.0 0.48 10.3 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HxlR PF01638.12 gi|219853197|ref|YP_002467629.1| - 3.5e-26 90.6 0.4 4e-26 90.4 0.3 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|219853197|ref|YP_002467629.1| - 0.058 13.1 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Radical_SAM PF04055.16 gi|219853198|ref|YP_002467630.1| - 8.6e-14 52.0 1.1 8.6e-14 52.0 0.8 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|219853198|ref|YP_002467630.1| - 3.5e-05 24.0 6.7 3.5e-05 24.0 4.6 2.8 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|219853198|ref|YP_002467630.1| - 0.00034 20.6 0.4 0.00034 20.6 0.2 2.5 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|219853198|ref|YP_002467630.1| - 0.0013 18.8 0.8 0.0013 18.8 0.6 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF383 PF04063.9 gi|219853199|ref|YP_002467631.1| - 0.013 15.0 0.1 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF383) Met_10 PF02475.11 gi|219853201|ref|YP_002467633.1| - 2.8e-45 154.3 0.0 3.9e-45 153.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|219853201|ref|YP_002467633.1| - 9.9e-09 34.8 0.0 1.5e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|219853201|ref|YP_002467633.1| - 1.3e-06 28.4 0.6 2.5e-06 27.5 0.4 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|219853201|ref|YP_002467633.1| - 1.6e-06 27.4 0.0 2.3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|219853201|ref|YP_002467633.1| - 5.1e-06 26.1 0.0 7.4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltrans_SAM PF10672.4 gi|219853201|ref|YP_002467633.1| - 8.8e-05 21.4 0.0 0.00013 20.9 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.1 gi|219853201|ref|YP_002467633.1| - 0.00018 21.0 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|219853201|ref|YP_002467633.1| - 0.0019 17.6 0.0 0.0037 16.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|219853201|ref|YP_002467633.1| - 0.0023 18.5 0.0 0.0038 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|219853201|ref|YP_002467633.1| - 0.0052 15.5 0.0 0.0075 14.9 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|219853201|ref|YP_002467633.1| - 0.0056 16.2 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|219853201|ref|YP_002467633.1| - 0.049 13.0 0.0 0.066 12.6 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase RrnaAD PF00398.15 gi|219853201|ref|YP_002467633.1| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TRM PF02005.11 gi|219853201|ref|YP_002467633.1| - 0.2 10.5 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase HMG-CoA_red PF00368.13 gi|219853202|ref|YP_002467634.1| - 3.3e-138 460.4 12.8 3.7e-138 460.2 8.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Nop PF01798.13 gi|219853202|ref|YP_002467634.1| - 0.00095 18.4 0.1 0.0018 17.5 0.1 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain Urease_beta PF00699.15 gi|219853202|ref|YP_002467634.1| - 0.026 14.3 0.0 0.065 13.0 0.0 1.7 1 0 0 1 1 1 0 Urease beta subunit Acetyltransf_1 PF00583.19 gi|219853203|ref|YP_002467635.1| - 1.5e-16 60.2 1.7 2e-16 59.7 1.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|219853203|ref|YP_002467635.1| - 4e-11 43.0 0.1 5.2e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|219853203|ref|YP_002467635.1| - 5.9e-11 42.3 0.9 7.8e-11 41.9 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|219853203|ref|YP_002467635.1| - 2.6e-06 27.0 0.1 3.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|219853203|ref|YP_002467635.1| - 8.9e-05 22.4 0.2 0.00019 21.3 0.2 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|219853203|ref|YP_002467635.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1015 PF06245.6 gi|219853204|ref|YP_002467636.1| - 1.2e-119 399.5 0.0 1.4e-119 399.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) Semialdhyde_dh PF01118.19 gi|219853205|ref|YP_002467637.1| - 2.3e-32 111.8 0.0 4.4e-32 110.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|219853205|ref|YP_002467637.1| - 1.9e-16 60.4 0.0 3e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|219853205|ref|YP_002467637.1| - 1.5e-06 28.7 0.1 3e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|219853205|ref|YP_002467637.1| - 0.004 17.1 0.6 0.061 13.3 0.5 2.6 2 1 1 3 3 3 1 NADH(P)-binding F420_oxidored PF03807.12 gi|219853205|ref|YP_002467637.1| - 0.015 15.7 0.0 0.03 14.7 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.15 gi|219853205|ref|YP_002467637.1| - 0.023 14.6 0.1 0.049 13.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.12 gi|219853205|ref|YP_002467637.1| - 0.049 12.5 0.0 0.098 11.5 0.0 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain CoA_binding_2 PF13380.1 gi|219853205|ref|YP_002467637.1| - 0.089 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain KR PF08659.5 gi|219853205|ref|YP_002467637.1| - 0.14 11.8 0.1 0.36 10.4 0.1 1.7 1 1 0 1 1 1 0 KR domain CBS PF00571.23 gi|219853206|ref|YP_002467638.1| - 1e-29 102.0 5.9 1.3e-16 60.1 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF4549 PF15082.1 gi|219853206|ref|YP_002467638.1| - 0.027 14.0 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4549) Thioredoxin_3 PF13192.1 gi|219853206|ref|YP_002467638.1| - 0.084 12.6 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin domain ArgJ PF01960.13 gi|219853207|ref|YP_002467639.1| - 9.6e-124 412.7 5.2 1.1e-123 412.4 3.6 1.0 1 0 0 1 1 1 1 ArgJ family AA_kinase PF00696.23 gi|219853208|ref|YP_002467640.1| - 3.5e-39 134.7 6.5 4.1e-39 134.5 4.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family Methyltransf_26 PF13659.1 gi|219853209|ref|YP_002467641.1| - 0.037 14.0 0.1 0.07 13.1 0.1 1.6 1 0 0 1 1 1 0 Methyltransferase domain Bactofilin PF04519.8 gi|219853210|ref|YP_002467642.1| - 7.4e-14 51.5 8.7 1e-08 35.0 0.8 2.7 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|219853210|ref|YP_002467642.1| - 0.0003 20.1 15.9 0.9 9.1 0.0 6.9 5 2 1 6 6 6 2 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|219853210|ref|YP_002467642.1| - 0.0047 16.5 3.0 5.7 6.5 0.0 3.1 2 1 0 3 3 3 3 Protein of unknown function (DUF3494) PhosphMutase PF10143.4 gi|219853211|ref|YP_002467643.1| - 1.3e-52 177.8 0.0 1.9e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|219853211|ref|YP_002467643.1| - 2.5e-47 161.4 0.0 2.8e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|219853211|ref|YP_002467643.1| - 0.02 14.2 0.0 0.082 12.2 0.0 1.9 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Ribosomal_S3Ae PF01015.13 gi|219853212|ref|YP_002467644.1| - 2.5e-61 206.4 1.2 2.8e-61 206.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family tRNA-synt_2b PF00587.20 gi|219853213|ref|YP_002467645.1| - 7.4e-14 51.7 0.0 1.3e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DHH PF01368.15 gi|219853215|ref|YP_002467647.1| - 1.5e-12 47.4 0.0 3.6e-12 46.1 0.0 1.7 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|219853215|ref|YP_002467647.1| - 1.7e-06 27.6 0.1 6.2e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 DHHA1 domain PP2C_2 PF13672.1 gi|219853215|ref|YP_002467647.1| - 0.069 12.5 0.4 0.12 11.7 0.3 1.3 1 0 0 1 1 1 0 Protein phosphatase 2C Ribosomal_S13_N PF08069.7 gi|219853216|ref|YP_002467648.1| - 2.2e-23 81.8 0.4 4.3e-23 80.9 0.1 1.6 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|219853216|ref|YP_002467648.1| - 1.1e-17 63.5 0.7 1.6e-17 62.9 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S15 DUF2072 PF09845.4 gi|219853217|ref|YP_002467649.1| - 1.1e-36 125.6 0.0 1.4e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|219853217|ref|YP_002467649.1| - 0.036 13.7 0.2 0.051 13.2 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1451 PF07295.6 gi|219853217|ref|YP_002467649.1| - 0.048 13.4 1.0 0.082 12.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zinc_ribbon_2 PF13240.1 gi|219853217|ref|YP_002467649.1| - 0.68 9.4 5.3 1.1 8.7 3.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|219853217|ref|YP_002467649.1| - 2 8.4 5.5 13 5.8 3.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|219853217|ref|YP_002467649.1| - 2.7 8.4 5.5 1.9 8.9 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|219853217|ref|YP_002467649.1| - 4.4 6.9 5.5 26 4.4 0.7 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219853217|ref|YP_002467649.1| - 8.9 6.1 6.3 30 4.4 0.7 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2073 PF09846.4 gi|219853218|ref|YP_002467650.1| - 4e-46 154.9 0.2 4.6e-46 154.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|219853219|ref|YP_002467651.1| - 2.5e-14 53.2 0.0 3.4e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|219853219|ref|YP_002467651.1| - 2.8e-12 46.4 0.2 6.8e-05 22.3 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|219853219|ref|YP_002467651.1| - 5.1e-07 29.1 0.0 0.0012 18.1 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.13 gi|219853219|ref|YP_002467651.1| - 3.9e-05 22.9 0.2 0.00066 18.9 0.2 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|219853219|ref|YP_002467651.1| - 0.00012 22.5 0.0 0.0029 18.1 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|219853219|ref|YP_002467651.1| - 0.00018 20.7 0.0 0.18 10.9 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|219853219|ref|YP_002467651.1| - 0.00025 21.8 0.1 0.00057 20.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|219853219|ref|YP_002467651.1| - 0.0011 19.2 0.0 0.0018 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|219853219|ref|YP_002467651.1| - 0.0037 17.4 0.0 0.032 14.4 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|219853219|ref|YP_002467651.1| - 0.0074 15.1 0.0 0.5 9.1 0.0 2.7 3 1 0 3 3 3 1 ArgK protein AAA_19 PF13245.1 gi|219853219|ref|YP_002467651.1| - 0.0099 15.6 1.4 0.04 13.6 0.1 2.4 3 0 0 3 3 2 1 Part of AAA domain AAA_16 PF13191.1 gi|219853219|ref|YP_002467651.1| - 0.011 15.6 0.0 0.016 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|219853219|ref|YP_002467651.1| - 0.012 15.4 0.0 1.9 8.2 0.0 2.2 1 1 1 2 2 2 0 Dynamin family DUF258 PF03193.11 gi|219853219|ref|YP_002467651.1| - 0.014 14.5 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|219853219|ref|YP_002467651.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|219853219|ref|YP_002467651.1| - 0.025 14.2 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|219853219|ref|YP_002467651.1| - 0.028 14.6 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|219853219|ref|YP_002467651.1| - 0.039 14.0 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|219853219|ref|YP_002467651.1| - 0.053 12.9 0.1 0.74 9.2 0.0 2.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Parvo_NS1 PF01057.12 gi|219853219|ref|YP_002467651.1| - 0.066 12.0 0.0 0.088 11.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MobB PF03205.9 gi|219853219|ref|YP_002467651.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.13 gi|219853219|ref|YP_002467651.1| - 0.091 11.7 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Septin PPV_E1_C PF00519.12 gi|219853219|ref|YP_002467651.1| - 0.11 11.0 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase ATP_bind_1 PF03029.12 gi|219853219|ref|YP_002467651.1| - 0.12 11.8 0.0 7.8 5.9 0.0 2.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|219853219|ref|YP_002467651.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter CBS PF00571.23 gi|219853220|ref|YP_002467652.1| - 1.3e-26 92.0 3.7 5.7e-18 64.4 1.0 2.4 2 0 0 2 2 2 2 CBS domain CBS PF00571.23 gi|219853221|ref|YP_002467653.1| - 2.8e-39 132.6 10.1 1.5e-14 53.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|219853222|ref|YP_002467654.1| - 4.7e-51 170.3 7.8 4.9e-13 48.6 0.0 4.2 4 0 0 4 4 4 4 CBS domain Peptidase_S51 PF03575.12 gi|219853222|ref|YP_002467654.1| - 0.072 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 CBS PF00571.23 gi|219853223|ref|YP_002467655.1| - 2.7e-52 174.3 13.5 2.3e-17 62.5 0.6 4.9 5 0 0 5 5 5 4 CBS domain CBS PF00571.23 gi|219853224|ref|YP_002467656.1| - 3.2e-27 94.0 11.7 4.8e-11 42.2 0.3 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|219853224|ref|YP_002467656.1| - 0.001 19.0 0.1 0.38 10.8 0.1 3.7 4 0 0 4 4 4 1 Ribosomal protein L9, C-terminal domain PKD PF00801.15 gi|219853225|ref|YP_002467657.1| - 8.2e-145 470.7 190.1 4.2e-14 52.0 4.3 15.1 14 1 0 14 14 14 14 PKD domain Y_Y_Y PF07495.8 gi|219853225|ref|YP_002467657.1| - 2.1e-05 24.1 28.6 4.3 7.1 0.0 9.9 12 0 0 12 12 12 6 Y_Y_Y domain DUF4625 PF15418.1 gi|219853225|ref|YP_002467657.1| - 0.0082 16.2 2.8 3.4 7.8 0.0 6.1 8 0 0 8 8 8 1 Domain of unknown function (DUF4625) A2M_N PF01835.14 gi|219853225|ref|YP_002467657.1| - 0.28 11.4 44.2 5.8 7.2 0.1 11.6 10 2 3 13 13 13 0 MG2 domain CBM_6 PF03422.10 gi|219853226|ref|YP_002467658.1| - 2.1e-22 79.5 6.0 4.5e-22 78.5 3.3 2.3 1 1 1 2 2 2 1 Carbohydrate binding module (family 6) Peptidase_C1 PF00112.18 gi|219853226|ref|YP_002467658.1| - 1.4e-05 25.1 0.4 0.0053 16.6 0.1 2.2 2 0 0 2 2 2 2 Papain family cysteine protease EF-hand_1 PF00036.27 gi|219853226|ref|YP_002467658.1| - 6.8e-05 21.8 3.7 0.015 14.5 0.2 2.7 2 0 0 2 2 2 2 EF hand EF-hand_6 PF13405.1 gi|219853226|ref|YP_002467658.1| - 0.0055 16.4 2.4 0.28 11.1 0.2 2.5 2 0 0 2 2 2 1 EF-hand domain EF-hand_7 PF13499.1 gi|219853226|ref|YP_002467658.1| - 0.014 15.4 2.9 0.12 12.5 2.1 2.4 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219853226|ref|YP_002467658.1| - 0.041 13.4 4.3 0.35 10.5 0.3 2.5 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219853226|ref|YP_002467658.1| - 1.9 7.9 12.8 0.098 12.0 0.4 2.9 3 0 0 3 3 3 0 EF hand DUF2298 PF10060.4 gi|219853227|ref|YP_002467659.1| - 5.5e-81 272.8 37.1 2.4e-80 270.7 25.7 2.0 1 1 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Tubulin PF00091.20 gi|219853228|ref|YP_002467660.1| - 6.1e-07 29.4 0.0 6.9e-06 26.0 0.0 2.3 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain PGK PF00162.14 gi|219853229|ref|YP_002467661.1| - 1.3e-116 389.3 0.2 1.5e-116 389.1 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase ATP-synt_D PF01813.12 gi|219853230|ref|YP_002467662.1| - 1.5e-62 210.6 10.5 1.7e-62 210.5 7.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D CCDC92 PF14916.1 gi|219853230|ref|YP_002467662.1| - 0.067 12.8 0.1 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Coiled-coil domain of unknown function Vps52 PF04129.7 gi|219853230|ref|YP_002467662.1| - 0.29 9.6 7.6 1.8 6.9 0.1 2.4 1 1 2 3 3 3 0 Vps52 / Sac2 family RP-C_C PF11800.3 gi|219853230|ref|YP_002467662.1| - 0.43 10.2 3.7 13 5.4 0.0 2.1 2 0 0 2 2 2 0 Replication protein C C-terminal region ATP-synt_ab PF00006.20 gi|219853231|ref|YP_002467663.1| - 5.5e-60 202.5 0.0 7.2e-60 202.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|219853231|ref|YP_002467663.1| - 4.5e-17 62.5 0.0 7.9e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|219853231|ref|YP_002467663.1| - 1.3e-09 38.1 0.9 1.3e-09 38.1 0.6 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RVT_3 PF13456.1 gi|219853231|ref|YP_002467663.1| - 0.057 13.2 0.0 13 5.6 0.0 2.6 2 0 0 2 2 2 0 Reverse transcriptase-like HAS-barrel PF09378.5 gi|219853231|ref|YP_002467663.1| - 0.1 12.4 2.0 0.15 12.0 0.5 2.0 2 0 0 2 2 2 0 HAS barrel domain ATP-synt_ab PF00006.20 gi|219853232|ref|YP_002467664.1| - 5.6e-98 326.6 0.0 1.1e-97 325.8 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|219853232|ref|YP_002467664.1| - 1.7e-21 76.7 1.8 3.1e-21 75.9 1.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|219853232|ref|YP_002467664.1| - 3.5e-13 49.5 0.9 1.3e-12 47.7 0.6 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|219853232|ref|YP_002467664.1| - 0.0014 18.5 0.1 2 8.5 0.0 2.5 2 0 0 2 2 2 2 Peptidase family M23 AAA_22 PF13401.1 gi|219853232|ref|YP_002467664.1| - 0.034 14.2 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF1932 PF09130.6 gi|219853232|ref|YP_002467664.1| - 0.12 12.1 4.1 1.6 8.4 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.12 gi|219853233|ref|YP_002467665.1| - 4.3e-20 71.9 0.0 5.1e-20 71.6 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Jun PF03957.8 gi|219853233|ref|YP_002467665.1| - 0.028 14.1 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Jun-like transcription factor Pan_kinase PF03309.9 gi|219853233|ref|YP_002467665.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.0 1 0 0 1 1 1 0 Type III pantothenate kinase vATP-synt_AC39 PF01992.11 gi|219853234|ref|YP_002467666.1| - 3.1e-69 233.6 0.3 3.5e-69 233.4 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.6 gi|219853234|ref|YP_002467666.1| - 0.0064 16.8 1.3 1.4 9.3 0.0 3.0 3 0 0 3 3 3 2 MerR, DNA binding vATP-synt_E PF01991.13 gi|219853235|ref|YP_002467667.1| - 3.3e-15 55.9 3.5 6.6e-15 54.9 2.4 1.5 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HisKA_3 PF07730.8 gi|219853235|ref|YP_002467667.1| - 3.2 8.1 5.8 0.77 10.1 0.6 2.5 2 1 1 3 3 3 0 Histidine kinase ATP-synt_C PF00137.16 gi|219853236|ref|YP_002467668.1| - 6.2e-19 67.6 13.5 6.2e-19 67.6 9.4 1.6 2 0 0 2 2 2 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|219853237|ref|YP_002467669.1| - 2.5e-92 310.0 10.5 4.6e-59 200.0 0.2 3.6 2 1 1 3 3 3 3 V-type ATPase 116kDa subunit family FlxA PF14282.1 gi|219853237|ref|YP_002467669.1| - 0.029 14.3 0.2 0.063 13.2 0.1 1.5 1 0 0 1 1 1 0 FlxA-like protein Phage_GP20 PF06810.6 gi|219853237|ref|YP_002467669.1| - 0.044 13.2 0.5 0.23 10.9 0.0 1.9 2 0 0 2 2 2 0 Phage minor structural protein GP20 Prefoldin PF02996.12 gi|219853237|ref|YP_002467669.1| - 0.15 11.7 0.2 0.15 11.7 0.1 1.6 2 0 0 2 2 2 0 Prefoldin subunit DUF3584 PF12128.3 gi|219853237|ref|YP_002467669.1| - 0.27 8.4 3.6 0.064 10.5 0.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Tropomyosin_1 PF12718.2 gi|219853237|ref|YP_002467669.1| - 0.45 10.3 2.7 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 Tropomyosin like Filament PF00038.16 gi|219853237|ref|YP_002467669.1| - 0.45 9.9 1.3 0.73 9.2 0.1 1.7 2 0 0 2 2 2 0 Intermediate filament protein Seryl_tRNA_N PF02403.17 gi|219853237|ref|YP_002467669.1| - 0.65 10.0 3.4 25 4.9 0.0 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.15 gi|219853237|ref|YP_002467669.1| - 1.5 8.6 3.6 1.8 8.3 0.3 2.1 2 0 0 2 2 2 0 Prefoldin subunit DUF948 PF06103.6 gi|219853237|ref|YP_002467669.1| - 3.5 7.5 7.7 13 5.6 0.0 3.4 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF3552 PF12072.3 gi|219853238|ref|YP_002467670.1| - 0.004 16.3 9.8 0.0043 16.2 6.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) ATP-synt_B PF00430.13 gi|219853238|ref|YP_002467670.1| - 0.011 15.4 9.3 0.011 15.4 6.4 1.9 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|219853238|ref|YP_002467670.1| - 0.033 14.4 9.3 0.045 14.0 6.4 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF1104 PF06518.6 gi|219853238|ref|YP_002467670.1| - 0.19 11.8 4.6 0.36 10.9 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) DUF572 PF04502.8 gi|219853238|ref|YP_002467670.1| - 0.86 8.7 5.0 0.87 8.7 3.5 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF572) DivIVA PF05103.8 gi|219853238|ref|YP_002467670.1| - 1.8 8.6 9.3 6.6 6.8 6.4 1.8 1 1 0 1 1 1 0 DivIVA protein HypA PF01155.14 gi|219853240|ref|YP_002467672.1| - 0.00027 20.5 0.5 0.00028 20.5 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|219853240|ref|YP_002467672.1| - 0.0008 19.1 1.2 0.00084 19.1 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|219853240|ref|YP_002467672.1| - 0.0021 17.9 7.2 0.011 15.7 5.0 1.9 1 1 0 1 1 1 1 Zinc ribbon domain FYDLN_acid PF09538.5 gi|219853240|ref|YP_002467672.1| - 0.0041 17.6 1.6 0.0046 17.5 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1595 PF12760.2 gi|219853240|ref|YP_002467672.1| - 0.0064 16.2 3.5 1.3 8.9 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|219853240|ref|YP_002467672.1| - 0.0065 16.0 2.7 0.0084 15.7 1.9 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zinc-ribbons_6 PF07191.7 gi|219853240|ref|YP_002467672.1| - 0.01 15.5 0.5 0.012 15.3 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|219853240|ref|YP_002467672.1| - 0.017 14.7 2.4 0.47 10.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219853240|ref|YP_002467672.1| - 0.022 14.4 2.4 0.68 9.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|219853240|ref|YP_002467672.1| - 0.029 13.9 4.7 0.55 9.8 0.6 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3279 PF11682.3 gi|219853240|ref|YP_002467672.1| - 0.055 13.0 0.4 0.059 12.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) zf-ribbon_3 PF13248.1 gi|219853240|ref|YP_002467672.1| - 0.056 12.6 2.1 4.2 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|219853240|ref|YP_002467672.1| - 0.058 13.4 0.7 3.8 7.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger zf-C3HC4_3 PF13920.1 gi|219853240|ref|YP_002467672.1| - 0.063 12.9 1.5 0.077 12.6 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|219853240|ref|YP_002467672.1| - 0.064 12.9 1.5 0.085 12.5 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rubredoxin PF00301.15 gi|219853240|ref|YP_002467672.1| - 0.071 12.9 2.3 0.21 11.4 1.6 1.8 1 1 0 1 1 1 0 Rubredoxin XPA_N PF01286.13 gi|219853240|ref|YP_002467672.1| - 0.077 12.6 4.4 1.5 8.5 0.2 2.1 2 0 0 2 2 2 0 XPA protein N-terminal TF_Zn_Ribbon PF08271.7 gi|219853240|ref|YP_002467672.1| - 0.083 12.2 4.1 3.1 7.2 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|219853240|ref|YP_002467672.1| - 0.1 12.3 4.1 0.55 9.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|219853240|ref|YP_002467672.1| - 0.11 12.4 2.4 9.5 6.2 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|219853240|ref|YP_002467672.1| - 0.14 12.1 4.1 2.3 8.2 2.8 2.1 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 zf-HIT PF04438.11 gi|219853240|ref|YP_002467672.1| - 0.15 11.7 0.5 0.15 11.7 0.4 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-HYPF PF07503.7 gi|219853240|ref|YP_002467672.1| - 0.19 11.1 3.9 1.6 8.2 0.4 2.1 2 0 0 2 2 2 0 HypF finger zf-trcl PF13451.1 gi|219853240|ref|YP_002467672.1| - 0.2 11.3 2.5 3.2 7.4 0.3 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|219853240|ref|YP_002467672.1| - 0.22 11.0 3.6 0.67 9.4 2.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|219853240|ref|YP_002467672.1| - 0.23 11.1 1.6 5.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1 PF03811.8 gi|219853240|ref|YP_002467672.1| - 0.26 10.7 4.9 1.2 8.6 0.6 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS91 PF14319.1 gi|219853240|ref|YP_002467672.1| - 0.3 10.6 2.5 0.42 10.1 1.8 1.2 1 1 0 1 1 1 0 Transposase zinc-binding domain Opy2 PF09463.5 gi|219853240|ref|YP_002467672.1| - 0.67 10.0 4.0 0.53 10.4 0.5 1.9 2 0 0 2 2 2 0 Opy2 protein DUF1610 PF07754.6 gi|219853240|ref|YP_002467672.1| - 0.82 9.8 4.1 1.1 9.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PhnA_Zn_Ribbon PF08274.7 gi|219853240|ref|YP_002467672.1| - 1.3 8.8 5.6 1.1 9.1 1.1 2.2 3 0 0 3 3 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.1 gi|219853240|ref|YP_002467672.1| - 1.3 9.4 6.4 0.83 10.0 0.5 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.1 gi|219853240|ref|YP_002467672.1| - 1.4 8.4 4.8 3.7 7.1 0.3 2.3 1 1 2 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|219853240|ref|YP_002467672.1| - 2.3 7.9 4.4 1.7 8.3 0.3 1.9 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|219853240|ref|YP_002467672.1| - 2.8 8.4 6.3 0.67 10.4 0.9 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|219853240|ref|YP_002467672.1| - 3.4 7.6 4.9 0.78 9.7 0.3 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger Auto_anti-p27 PF06677.7 gi|219853240|ref|YP_002467672.1| - 3.5 7.4 5.4 7.8 6.3 3.8 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) T2SF PF00482.18 gi|219853241|ref|YP_002467673.1| - 2e-27 95.5 20.1 6.7e-18 64.7 2.6 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|219853242|ref|YP_002467674.1| - 7e-47 159.6 0.0 1.1e-46 158.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|219853242|ref|YP_002467674.1| - 0.0024 17.3 0.0 0.005 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|219853243|ref|YP_002467675.1| - 3e-10 39.5 1.4 1.2e-09 37.5 1.0 1.8 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|219853243|ref|YP_002467675.1| - 1.1e-06 28.1 0.0 3.6e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|219853243|ref|YP_002467675.1| - 0.00016 20.6 0.1 0.08 11.7 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein UPF0079 PF02367.12 gi|219853243|ref|YP_002467675.1| - 0.00033 20.2 0.2 0.012 15.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Rad51 PF08423.6 gi|219853243|ref|YP_002467675.1| - 0.0012 17.8 0.1 1.2 7.9 0.0 2.1 2 0 0 2 2 2 2 Rad51 GvpD PF07088.6 gi|219853243|ref|YP_002467675.1| - 0.013 13.8 0.2 2 6.6 0.1 2.1 2 0 0 2 2 2 0 GvpD gas vesicle protein KaiC PF06745.8 gi|219853244|ref|YP_002467676.1| - 1.9e-51 174.3 0.0 2.2e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|219853244|ref|YP_002467676.1| - 1.6e-12 47.2 0.0 2.1e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|219853244|ref|YP_002467676.1| - 0.00018 20.0 0.8 0.00066 18.1 0.5 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|219853244|ref|YP_002467676.1| - 0.0007 19.2 0.0 0.0021 17.6 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|219853244|ref|YP_002467676.1| - 0.00071 19.4 0.2 0.0025 17.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|219853244|ref|YP_002467676.1| - 0.0029 17.7 0.4 1.6 8.9 0.0 2.3 1 1 0 2 2 2 2 RNA helicase RecA PF00154.16 gi|219853244|ref|YP_002467676.1| - 0.0038 16.3 0.0 0.0056 15.7 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_10 PF12846.2 gi|219853244|ref|YP_002467676.1| - 0.0047 16.4 0.0 0.0068 15.8 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain DnaB_C PF03796.10 gi|219853244|ref|YP_002467676.1| - 0.016 14.1 0.0 0.034 13.0 0.0 1.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|219853244|ref|YP_002467676.1| - 0.016 14.0 0.1 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 Rad51 IstB_IS21 PF01695.12 gi|219853244|ref|YP_002467676.1| - 0.03 13.7 0.1 0.38 10.1 0.0 2.2 1 1 1 2 2 2 0 IstB-like ATP binding protein Imm6 PF14434.1 gi|219853244|ref|YP_002467676.1| - 0.054 13.2 0.1 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 Immunity protein Imm6 Arch_ATPase PF01637.13 gi|219853244|ref|YP_002467676.1| - 0.06 13.0 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|219853244|ref|YP_002467676.1| - 0.066 11.8 0.0 0.12 10.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|219853244|ref|YP_002467676.1| - 0.11 12.6 0.6 0.34 11.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|219853244|ref|YP_002467676.1| - 0.16 12.2 0.2 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|219853244|ref|YP_002467676.1| - 0.33 11.7 1.5 1.6 9.5 1.1 2.2 1 1 0 1 1 1 0 AAA domain BofA PF07441.6 gi|219853245|ref|YP_002467677.1| - 1e-08 35.0 23.0 1.8e-08 34.2 16.0 1.3 1 1 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA BofA PF07441.6 gi|219853246|ref|YP_002467678.1| - 9.3e-11 41.5 15.3 1.2e-10 41.1 10.6 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA ATP-synt_J PF04911.7 gi|219853246|ref|YP_002467678.1| - 2.7 7.5 4.1 5.2 6.6 0.4 2.3 1 1 1 2 2 2 0 ATP synthase j chain FtsX PF02687.16 gi|219853246|ref|YP_002467678.1| - 2.9 7.6 11.2 5.5 6.7 7.8 1.5 1 1 0 1 1 1 0 FtsX-like permease family DUF2937 PF11157.3 gi|219853246|ref|YP_002467678.1| - 5.2 6.3 6.4 0.57 9.4 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) YqhR PF11085.3 gi|219853246|ref|YP_002467678.1| - 6.5 6.2 8.4 6.7 6.1 5.8 1.2 1 0 0 1 1 1 0 Conserved membrane protein YqhR PmbA_TldD PF01523.11 gi|219853247|ref|YP_002467679.1| - 5.7e-56 189.9 0.0 7.2e-56 189.6 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|219853248|ref|YP_002467680.1| - 2.5e-55 187.8 0.0 3e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|219853249|ref|YP_002467681.1| - 1.1e-34 119.5 2.4 1.9e-34 118.7 1.7 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|219853249|ref|YP_002467681.1| - 1.3e-31 109.8 0.0 2.7e-23 82.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|219853249|ref|YP_002467681.1| - 2.7e-16 59.3 0.1 7.8e-11 41.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|219853249|ref|YP_002467681.1| - 6.5e-16 58.2 0.1 3.5e-09 36.3 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|219853249|ref|YP_002467681.1| - 1.8e-11 43.9 0.0 0.00015 21.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|219853249|ref|YP_002467681.1| - 3.9e-09 36.0 0.5 8.3e-09 35.0 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|219853249|ref|YP_002467681.1| - 1.5e-08 33.7 0.0 0.023 13.5 0.0 3.3 3 0 0 3 3 3 2 MCM2/3/5 family AAA PF00004.24 gi|219853249|ref|YP_002467681.1| - 3.2e-07 30.5 0.0 0.0087 16.2 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|219853249|ref|YP_002467681.1| - 9.9e-07 28.8 0.0 0.024 14.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|219853249|ref|YP_002467681.1| - 7.3e-06 26.1 0.0 0.002 18.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|219853249|ref|YP_002467681.1| - 1e-05 24.7 0.0 0.0046 16.0 0.1 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|219853249|ref|YP_002467681.1| - 7.4e-05 22.3 0.0 0.27 10.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|219853249|ref|YP_002467681.1| - 0.00025 21.0 0.0 0.15 11.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|219853249|ref|YP_002467681.1| - 0.0011 18.6 0.0 0.0032 17.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|219853249|ref|YP_002467681.1| - 0.0018 17.5 0.0 0.0037 16.5 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein T2SE PF00437.15 gi|219853249|ref|YP_002467681.1| - 0.0026 16.6 0.0 0.02 13.8 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|219853249|ref|YP_002467681.1| - 0.0039 16.7 0.8 0.0067 16.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|219853249|ref|YP_002467681.1| - 0.0052 16.6 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|219853249|ref|YP_002467681.1| - 0.0068 15.1 0.0 0.045 12.4 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|219853249|ref|YP_002467681.1| - 0.011 16.0 0.0 0.025 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|219853249|ref|YP_002467681.1| - 0.012 15.2 0.0 0.032 13.8 0.0 1.7 2 0 0 2 2 1 0 NACHT domain Parvo_NS1 PF01057.12 gi|219853249|ref|YP_002467681.1| - 0.013 14.4 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_16 PF13191.1 gi|219853249|ref|YP_002467681.1| - 0.017 15.1 0.0 0.33 10.9 0.0 2.5 3 0 0 3 3 2 0 AAA ATPase domain DUF815 PF05673.8 gi|219853249|ref|YP_002467681.1| - 0.036 13.0 0.0 0.061 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|219853249|ref|YP_002467681.1| - 0.038 13.4 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|219853249|ref|YP_002467681.1| - 0.043 14.6 0.1 0.43 11.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|219853249|ref|YP_002467681.1| - 0.053 13.8 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 ABC transporter TrwB_AAD_bind PF10412.4 gi|219853249|ref|YP_002467681.1| - 0.083 11.5 0.0 0.15 10.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|219853249|ref|YP_002467681.1| - 0.091 11.8 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|219853249|ref|YP_002467681.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Pribosyltran_N PF13793.1 gi|219853250|ref|YP_002467682.1| - 4.5e-20 71.5 0.0 2e-19 69.4 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|219853250|ref|YP_002467682.1| - 3.5e-10 39.6 0.5 1.3e-09 37.7 0.2 2.1 2 1 1 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|219853250|ref|YP_002467682.1| - 1.6e-09 37.7 0.2 3e-09 36.9 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|219853250|ref|YP_002467682.1| - 0.003 16.7 0.1 0.0049 16.0 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase RTC PF01137.16 gi|219853251|ref|YP_002467683.1| - 4.8e-65 218.5 0.1 5.6e-65 218.3 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|219853251|ref|YP_002467683.1| - 4.1e-12 46.0 0.1 7e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain UPF0278 PF08745.6 gi|219853252|ref|YP_002467684.1| - 0.0035 16.6 0.1 0.2 10.8 0.1 2.2 2 0 0 2 2 2 2 UPF0278 family Pribosyltran PF00156.22 gi|219853253|ref|YP_002467685.1| - 3.2e-17 62.4 0.0 5.2e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|219853253|ref|YP_002467685.1| - 0.0051 16.0 0.0 0.006 15.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.10 gi|219853253|ref|YP_002467685.1| - 0.01 15.6 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|219853253|ref|YP_002467685.1| - 0.027 14.1 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Terminase_5 PF06056.7 gi|219853253|ref|YP_002467685.1| - 0.036 13.6 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) PRTase_2 PF15609.1 gi|219853253|ref|YP_002467685.1| - 0.041 13.1 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase GerE PF00196.14 gi|219853253|ref|YP_002467685.1| - 0.061 12.6 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Cpn60_TCP1 PF00118.19 gi|219853254|ref|YP_002467686.1| - 7.3e-147 489.8 17.3 8.4e-147 489.6 12.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PAS_9 PF13426.1 gi|219853255|ref|YP_002467687.1| - 1.6e-26 92.7 0.0 3.8e-13 49.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|219853255|ref|YP_002467687.1| - 2.5e-23 82.1 0.0 7.6e-23 80.6 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|219853255|ref|YP_002467687.1| - 9.8e-23 80.0 0.0 2.6e-22 78.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|219853255|ref|YP_002467687.1| - 1.2e-21 76.6 0.2 4.8e-17 61.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|219853255|ref|YP_002467687.1| - 1.8e-20 72.7 0.0 3.1e-10 39.8 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|219853255|ref|YP_002467687.1| - 3.6e-18 65.5 0.1 1.6e-08 34.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219853255|ref|YP_002467687.1| - 1.4e-08 34.2 0.0 0.00077 19.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|219853255|ref|YP_002467687.1| - 2.3e-08 33.9 0.0 7.4e-06 25.8 0.0 3.2 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|219853255|ref|YP_002467687.1| - 0.00089 19.0 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|219853255|ref|YP_002467687.1| - 0.001 19.0 0.0 0.006 16.5 0.0 2.3 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|219853255|ref|YP_002467687.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|219853255|ref|YP_002467687.1| - 0.064 12.9 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 GHKL domain HisKA PF00512.20 gi|219853255|ref|YP_002467687.1| - 0.075 13.0 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Flavin_Reduct PF01613.13 gi|219853256|ref|YP_002467688.1| - 1.4e-28 99.7 0.0 1.7e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain ParD PF09386.5 gi|219853256|ref|YP_002467688.1| - 0.0062 16.6 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 Antitoxin ParD FAD_binding_3 PF01494.14 gi|219853257|ref|YP_002467689.1| - 1.1e-17 64.1 0.0 2.1e-17 63.1 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|219853257|ref|YP_002467689.1| - 3.1e-15 55.9 0.1 1.1e-07 31.1 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|219853257|ref|YP_002467689.1| - 4.9e-14 51.8 0.0 5.2e-06 25.3 0.0 2.9 1 1 1 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|219853257|ref|YP_002467689.1| - 5.3e-09 35.4 0.0 7.3e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|219853257|ref|YP_002467689.1| - 1e-08 34.7 0.2 1.4e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|219853257|ref|YP_002467689.1| - 3.6e-08 32.3 0.4 1.9e-07 29.9 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|219853257|ref|YP_002467689.1| - 4.3e-08 33.2 0.1 7.4e-08 32.5 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|219853257|ref|YP_002467689.1| - 9.2e-08 31.4 0.1 2.1e-07 30.2 0.0 1.5 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|219853257|ref|YP_002467689.1| - 1.6e-07 31.2 0.0 3.6e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|219853257|ref|YP_002467689.1| - 5.7e-07 28.7 0.2 2.4e-06 26.6 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|219853257|ref|YP_002467689.1| - 3e-06 26.4 0.2 1.1e-05 24.5 0.0 2.0 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|219853257|ref|YP_002467689.1| - 9e-06 26.0 0.0 0.0074 16.6 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|219853257|ref|YP_002467689.1| - 0.0003 20.9 0.1 0.00092 19.3 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|219853257|ref|YP_002467689.1| - 0.0025 18.0 0.0 0.0081 16.3 0.0 1.7 1 1 1 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|219853257|ref|YP_002467689.1| - 0.004 16.8 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|219853257|ref|YP_002467689.1| - 0.018 14.7 0.0 0.17 11.6 0.0 2.2 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|219853257|ref|YP_002467689.1| - 0.028 13.8 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PHP PF02811.14 gi|219853257|ref|YP_002467689.1| - 0.039 13.7 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 PHP domain AlaDh_PNT_C PF01262.16 gi|219853257|ref|YP_002467689.1| - 0.041 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|219853257|ref|YP_002467689.1| - 0.052 12.9 0.1 0.081 12.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|219853257|ref|YP_002467689.1| - 0.082 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ABC2_membrane_4 PF12730.2 gi|219853258|ref|YP_002467690.1| - 5e-13 48.7 9.1 5e-13 48.7 6.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|219853258|ref|YP_002467690.1| - 8.1e-08 31.4 12.3 8.1e-08 31.4 8.5 2.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|219853258|ref|YP_002467690.1| - 2.1e-05 23.7 20.0 2.4e-05 23.5 10.7 2.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|219853258|ref|YP_002467690.1| - 4.7e-05 22.6 10.7 4.7e-05 22.6 7.4 2.1 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|219853258|ref|YP_002467690.1| - 0.012 14.9 8.8 0.094 11.9 0.5 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein TRP PF06011.7 gi|219853258|ref|YP_002467690.1| - 0.18 10.3 6.7 0.048 12.2 2.3 1.7 2 0 0 2 2 2 0 Transient receptor potential (TRP) ion channel O-ag_pol_Wzy PF14296.1 gi|219853258|ref|YP_002467690.1| - 1.1 7.8 5.3 2 6.9 1.6 2.1 2 0 0 2 2 2 0 O-antigen polysaccharide polymerase Wzy EmrE PF13536.1 gi|219853258|ref|YP_002467690.1| - 2.3 8.4 22.9 0.17 12.0 5.9 2.8 1 1 2 3 3 3 0 Multidrug resistance efflux transporter ABC_tran PF00005.22 gi|219853259|ref|YP_002467691.1| - 1.9e-29 102.7 0.0 4.3e-28 98.3 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|219853259|ref|YP_002467691.1| - 6.8e-14 52.5 0.0 2.2e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|219853259|ref|YP_002467691.1| - 0.0028 17.6 0.3 0.017 15.0 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|219853259|ref|YP_002467691.1| - 0.0042 17.4 0.0 0.0068 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|219853259|ref|YP_002467691.1| - 0.013 15.7 0.0 0.18 12.0 0.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|219853259|ref|YP_002467691.1| - 0.032 13.7 0.2 0.081 12.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|219853259|ref|YP_002467691.1| - 0.087 12.5 0.1 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|219853259|ref|YP_002467691.1| - 0.12 12.5 0.1 0.47 10.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain Multi_Drug_Res PF00893.14 gi|219853260|ref|YP_002467692.1| - 1.2e-14 54.5 0.2 1.7e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|219853260|ref|YP_002467692.1| - 0.0016 18.6 2.8 0.0019 18.3 2.0 1.1 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|219853260|ref|YP_002467692.1| - 0.17 11.9 5.9 0.51 10.3 4.1 1.7 1 1 0 1 1 1 0 EamA-like transporter family OCIA PF07051.6 gi|219853260|ref|YP_002467692.1| - 0.21 10.9 0.8 0.23 10.8 0.1 1.4 2 0 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) DUF3792 PF12670.2 gi|219853260|ref|YP_002467692.1| - 1.8 8.4 7.4 0.24 11.2 1.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) DUF3096 PF11295.3 gi|219853260|ref|YP_002467692.1| - 7.2 6.1 8.1 0.81 9.2 2.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) HisKA PF00512.20 gi|219853261|ref|YP_002467693.1| - 0.00077 19.4 0.3 0.0027 17.6 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|219853261|ref|YP_002467693.1| - 0.0036 16.8 0.1 0.042 13.4 0.0 2.4 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c PF02518.21 gi|219853261|ref|YP_002467693.1| - 0.0045 16.6 0.0 0.0093 15.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|219853261|ref|YP_002467693.1| - 0.0059 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain FrhB_FdhB_C PF04432.8 gi|219853262|ref|YP_002467694.1| - 9.3e-38 129.1 3.9 1.3e-37 128.6 0.0 2.1 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|219853262|ref|YP_002467694.1| - 1.5e-22 79.2 0.1 2.9e-22 78.2 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_6 PF12837.2 gi|219853262|ref|YP_002467694.1| - 1.2e-05 24.9 2.4 1.2e-05 24.9 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|219853262|ref|YP_002467694.1| - 7.4e-05 22.1 7.9 7.4e-05 22.1 5.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219853262|ref|YP_002467694.1| - 0.00035 20.3 13.6 0.00035 20.3 9.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219853262|ref|YP_002467694.1| - 0.00036 20.8 14.9 0.00036 20.8 10.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219853262|ref|YP_002467694.1| - 0.00044 20.4 12.9 0.00044 20.4 9.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219853262|ref|YP_002467694.1| - 0.00062 19.5 3.5 0.00062 19.5 2.4 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219853262|ref|YP_002467694.1| - 0.00072 19.9 12.6 0.0039 17.5 0.7 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219853262|ref|YP_002467694.1| - 0.0053 16.7 14.7 0.028 14.4 1.5 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219853262|ref|YP_002467694.1| - 0.021 15.1 5.0 0.021 15.1 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|219853262|ref|YP_002467694.1| - 0.025 15.3 14.3 0.025 15.3 9.9 2.7 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|219853262|ref|YP_002467694.1| - 0.043 14.3 10.2 0.043 14.3 7.1 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219853262|ref|YP_002467694.1| - 0.15 12.6 9.8 0.24 11.9 1.2 3.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219853262|ref|YP_002467694.1| - 0.71 10.3 10.7 5.1 7.5 2.5 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|219853262|ref|YP_002467694.1| - 1.4 8.8 19.7 0.28 11.0 3.9 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853262|ref|YP_002467694.1| - 1.9 8.8 17.9 0.1 12.9 1.1 2.7 2 1 0 3 3 2 0 4Fe-4S dicluster domain GXGXG PF01493.14 gi|219853263|ref|YP_002467695.1| - 5.7e-34 116.9 11.0 6.8e-34 116.6 7.6 1.0 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.12 gi|219853264|ref|YP_002467696.1| - 1.2e-133 445.6 0.1 1.2e-133 445.6 0.1 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|219853264|ref|YP_002467696.1| - 9.3e-12 44.4 9.3 7.4e-09 34.9 2.4 3.2 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_7 PF12838.2 gi|219853264|ref|YP_002467696.1| - 1.1e-09 38.4 17.5 1.1e-07 32.0 8.8 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Glu_syn_central PF04898.9 gi|219853264|ref|YP_002467696.1| - 1.3e-09 37.7 0.3 0.00015 21.0 0.0 2.4 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_10 PF13237.1 gi|219853264|ref|YP_002467696.1| - 3.4e-09 36.3 17.0 2.6e-07 30.3 8.6 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219853264|ref|YP_002467696.1| - 2.8e-08 33.8 19.0 1.3e-07 31.7 8.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219853264|ref|YP_002467696.1| - 3e-08 34.2 10.2 4.3e-05 24.1 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain NMO PF03060.10 gi|219853264|ref|YP_002467696.1| - 5.8e-08 32.2 5.2 1.1e-07 31.3 3.6 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4 PF00037.22 gi|219853264|ref|YP_002467696.1| - 1.7e-07 30.5 23.0 3.9e-05 23.0 2.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain IMPDH PF00478.20 gi|219853264|ref|YP_002467696.1| - 5.6e-07 28.7 4.9 3.5e-06 26.1 2.5 2.6 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_21 PF14697.1 gi|219853264|ref|YP_002467696.1| - 2.6e-06 27.1 10.3 2.6e-06 27.1 7.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853264|ref|YP_002467696.1| - 3.1e-06 27.4 8.2 0.08 13.2 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219853264|ref|YP_002467696.1| - 1.1e-05 25.0 24.2 5.5e-05 22.8 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|219853264|ref|YP_002467696.1| - 3.6e-05 23.6 16.7 0.012 15.6 9.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|219853264|ref|YP_002467696.1| - 0.00011 21.2 4.2 0.0015 17.5 2.9 2.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_2 PF12797.2 gi|219853264|ref|YP_002467696.1| - 0.00028 20.6 23.0 0.0021 17.9 1.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|219853264|ref|YP_002467696.1| - 0.00036 19.8 0.5 0.00075 18.8 0.4 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|219853264|ref|YP_002467696.1| - 0.0067 15.7 2.5 0.12 11.5 0.8 2.5 2 1 1 3 3 3 1 PcrB family Fer4_4 PF12800.2 gi|219853264|ref|YP_002467696.1| - 0.0087 16.3 22.0 0.11 12.8 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|219853264|ref|YP_002467696.1| - 0.015 15.2 5.4 0.015 15.2 3.8 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219853264|ref|YP_002467696.1| - 0.015 15.6 16.6 0.46 10.9 1.4 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain IGPS PF00218.16 gi|219853264|ref|YP_002467696.1| - 0.09 11.8 0.1 0.18 10.8 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Fer4_15 PF13459.1 gi|219853264|ref|YP_002467696.1| - 0.16 12.5 18.1 0.037 14.5 7.5 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219853264|ref|YP_002467696.1| - 2.8 8.7 28.4 1.5 9.5 2.7 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain GATase_2 PF00310.16 gi|219853265|ref|YP_002467697.1| - 6.2e-25 87.6 0.1 1e-23 83.6 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|219853265|ref|YP_002467697.1| - 7.2e-17 61.5 0.0 4.3e-16 59.0 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|219853265|ref|YP_002467697.1| - 3.9e-12 46.0 0.0 1.4e-10 40.9 0.0 2.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|219853265|ref|YP_002467697.1| - 0.023 13.3 0.0 1.3 7.5 0.0 2.5 2 1 1 3 3 3 0 Glutamine amidotransferases class-II Gln-synt_C PF00120.19 gi|219853266|ref|YP_002467698.1| - 8.7e-101 336.4 0.0 1.1e-100 336.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|219853266|ref|YP_002467698.1| - 1.8e-30 104.3 0.0 3.9e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF4346 PF14251.1 gi|219853267|ref|YP_002467699.1| - 4.7e-07 29.5 0.0 1.2e-06 28.2 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.17 gi|219853267|ref|YP_002467699.1| - 0.00029 20.2 0.0 0.064 12.6 0.0 2.3 1 1 1 2 2 2 2 Pterin binding enzyme DUF1685 PF07939.6 gi|219853267|ref|YP_002467699.1| - 0.15 11.7 0.1 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1685) PHP_C PF13263.1 gi|219853268|ref|YP_002467700.1| - 2.5e-17 62.1 1.2 4.3e-17 61.3 0.9 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|219853268|ref|YP_002467700.1| - 6.2e-15 55.4 0.9 2e-14 53.7 0.6 1.8 1 1 0 1 1 1 1 PHP domain PseudoU_synth_1 PF01416.15 gi|219853269|ref|YP_002467701.1| - 5.8e-30 103.8 0.0 8.6e-16 58.2 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase TPP_enzyme_C PF02775.16 gi|219853271|ref|YP_002467703.1| - 1.1e-24 86.7 0.4 1.8e-24 86.0 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|219853271|ref|YP_002467703.1| - 0.0012 17.8 0.5 0.0033 16.3 0.2 1.6 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|219853272|ref|YP_002467704.1| - 1e-68 231.3 1.0 1.2e-68 231.0 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|219853272|ref|YP_002467704.1| - 6e-09 35.8 0.0 1.5e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.13 gi|219853273|ref|YP_002467705.1| - 5e-35 120.9 0.3 5.9e-35 120.7 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|219853274|ref|YP_002467706.1| - 1.5e-14 52.8 13.3 7.4e-08 31.6 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219853274|ref|YP_002467706.1| - 1.1e-09 37.8 22.0 1.4e-06 27.9 8.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219853274|ref|YP_002467706.1| - 1.4e-09 37.2 12.1 8.9e-05 22.1 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219853274|ref|YP_002467706.1| - 1.9e-09 37.7 8.5 0.0002 21.6 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219853274|ref|YP_002467706.1| - 1.9e-09 38.0 9.7 5.1e-05 23.9 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|219853274|ref|YP_002467706.1| - 3e-08 33.1 11.2 0.00024 20.8 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219853274|ref|YP_002467706.1| - 2.8e-07 31.0 8.8 0.0021 18.5 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|219853274|ref|YP_002467706.1| - 3e-07 30.6 5.5 0.0011 19.3 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219853274|ref|YP_002467706.1| - 8e-07 28.8 21.7 3e-05 23.7 8.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219853274|ref|YP_002467706.1| - 1.7e-06 28.1 25.0 3.3e-05 24.0 9.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219853274|ref|YP_002467706.1| - 1.4e-05 25.3 10.0 0.001 19.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|219853274|ref|YP_002467706.1| - 1.5e-05 24.9 10.4 0.0068 16.4 0.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219853274|ref|YP_002467706.1| - 1.9e-05 24.6 12.0 0.0067 16.6 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|219853274|ref|YP_002467706.1| - 0.67 10.4 14.6 2 8.9 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219853274|ref|YP_002467706.1| - 1.8 9.2 19.5 0.91 10.2 4.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain PBP_like_2 PF12849.2 gi|219853275|ref|YP_002467707.1| - 2.1e-18 66.8 1.1 3.5e-18 66.0 0.5 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|219853275|ref|YP_002467707.1| - 0.01 14.8 0.0 0.015 14.2 0.0 1.4 1 1 0 1 1 1 0 PBP superfamily domain HAMP PF00672.20 gi|219853276|ref|YP_002467708.1| - 8.8e-16 57.8 0.2 8.8e-16 57.8 0.2 2.9 3 0 0 3 3 3 1 HAMP domain 4HB_MCP_1 PF12729.2 gi|219853276|ref|YP_002467708.1| - 0.003 16.9 0.7 0.003 16.9 0.5 3.1 4 0 0 4 4 4 2 Four helix bundle sensory module for signal transduction DUF2149 PF09919.4 gi|219853276|ref|YP_002467708.1| - 0.039 14.0 4.9 0.13 12.4 0.0 2.9 2 2 1 3 3 3 0 Uncharacterized conserved protein (DUF2149) DUF1049 PF06305.6 gi|219853276|ref|YP_002467708.1| - 0.21 11.0 3.1 2 7.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Sigma_reg_N PF13800.1 gi|219853276|ref|YP_002467708.1| - 0.92 9.5 4.7 0.34 10.9 0.4 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4446 PF14584.1 gi|219853276|ref|YP_002467708.1| - 2.2 8.0 5.5 1 9.1 0.3 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF4446) Oxidored_q1 PF00361.15 gi|219853278|ref|YP_002467710.1| - 3.4e-51 174.0 20.5 3.4e-51 174.0 14.2 3.7 3 1 1 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|219853278|ref|YP_002467710.1| - 4.7e-06 26.0 1.5 4.7e-06 26.0 1.1 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.16 gi|219853279|ref|YP_002467711.1| - 1.5e-18 66.9 18.9 6.1e-18 64.9 13.1 1.8 1 1 0 1 1 1 1 NADH dehydrogenase Oxidored_q6 PF01058.17 gi|219853280|ref|YP_002467712.1| - 8.7e-29 99.7 1.1 1.1e-28 99.4 0.7 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|219853281|ref|YP_002467713.1| - 7.4e-12 45.4 0.0 8.8e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|219853282|ref|YP_002467714.1| - 1.7e-37 128.9 0.0 2.3e-24 85.8 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|219853282|ref|YP_002467714.1| - 1.9e-17 63.2 0.0 8.7e-14 51.1 0.0 3.0 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|219853283|ref|YP_002467715.1| - 3.3e-10 39.1 11.3 6.6e-05 22.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|219853283|ref|YP_002467715.1| - 4.1e-10 39.8 22.7 1.2e-07 31.9 9.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|219853283|ref|YP_002467715.1| - 2.7e-09 36.7 20.4 1.5e-07 31.1 8.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219853283|ref|YP_002467715.1| - 4.6e-09 35.9 22.2 2.6e-07 30.3 7.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219853283|ref|YP_002467715.1| - 7.1e-09 36.2 8.7 8.2e-05 23.2 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|219853283|ref|YP_002467715.1| - 5.7e-08 32.2 12.7 7.3e-05 22.4 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219853283|ref|YP_002467715.1| - 1.4e-07 31.0 11.5 0.0012 18.6 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|219853283|ref|YP_002467715.1| - 4.8e-07 30.2 6.2 0.0023 18.4 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|219853283|ref|YP_002467715.1| - 1.1e-06 28.8 12.2 1.6e-06 28.2 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853283|ref|YP_002467715.1| - 2e-05 24.8 10.8 0.0055 17.0 0.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219853283|ref|YP_002467715.1| - 0.00011 22.1 12.4 0.001 19.0 9.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219853283|ref|YP_002467715.1| - 0.024 15.0 14.9 0.48 10.8 4.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|219853283|ref|YP_002467715.1| - 0.026 14.4 5.7 0.047 13.5 3.9 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|219853283|ref|YP_002467715.1| - 0.33 11.3 16.5 0.8 10.1 2.9 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|219853283|ref|YP_002467715.1| - 0.48 11.1 20.7 0.65 10.6 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain LIM PF00412.17 gi|219853283|ref|YP_002467715.1| - 0.99 9.5 7.1 1.5 8.9 4.9 1.3 1 0 0 1 1 1 0 LIM domain Fer4_4 PF12800.2 gi|219853283|ref|YP_002467715.1| - 1.1 9.7 17.0 0.53 10.7 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M20 PF01546.23 gi|219853284|ref|YP_002467716.1| - 1.2e-21 77.0 0.1 1.8e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|219853284|ref|YP_002467716.1| - 7.1e-11 41.8 0.2 4.7e-10 39.1 0.0 2.2 2 0 0 2 2 2 1 Peptidase dimerisation domain N6_N4_Mtase PF01555.13 gi|219853285|ref|YP_002467717.1| - 1.3e-15 57.4 0.0 9.5e-11 41.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|219853285|ref|YP_002467717.1| - 4.5e-12 46.0 0.0 1.6e-11 44.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|219853285|ref|YP_002467717.1| - 3.1e-08 33.4 0.0 8.6e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|219853285|ref|YP_002467717.1| - 0.0053 16.2 0.0 0.0081 15.6 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Met_10 PF02475.11 gi|219853285|ref|YP_002467717.1| - 0.0055 16.3 0.0 0.0093 15.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein HEAT_2 PF13646.1 gi|219853286|ref|YP_002467718.1| - 1e-102 336.6 69.1 3.7e-17 62.3 1.2 11.1 4 3 7 12 12 12 12 HEAT repeats HEAT PF02985.17 gi|219853286|ref|YP_002467718.1| - 2e-57 186.1 26.6 3.1e-05 23.6 0.0 19.5 20 0 0 20 20 20 14 HEAT repeat HEAT_PBS PF03130.11 gi|219853286|ref|YP_002467718.1| - 9.7e-43 140.3 75.9 0.00063 19.9 0.1 18.2 19 0 0 19 19 19 11 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|219853286|ref|YP_002467718.1| - 1.1e-35 121.1 52.7 0.005 17.2 0.1 18.2 14 5 6 20 20 20 11 HEAT-like repeat Arm PF00514.18 gi|219853286|ref|YP_002467718.1| - 1.2e-28 97.8 18.5 0.0056 16.4 0.0 17.7 12 5 6 18 18 18 6 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|219853286|ref|YP_002467718.1| - 9.3e-06 25.6 0.0 2 8.2 0.0 7.7 8 2 1 9 9 9 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|219853286|ref|YP_002467718.1| - 1.5e-05 23.5 0.2 0.15 10.3 0.0 5.1 5 2 0 5 5 5 1 Adaptin N terminal region DUF4042 PF13251.1 gi|219853286|ref|YP_002467718.1| - 0.0056 16.1 2.9 7.5 5.9 0.0 5.1 5 2 2 7 7 7 1 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|219853286|ref|YP_002467718.1| - 0.21 10.8 0.3 15 4.8 0.0 4.1 3 2 1 4 4 4 0 CLASP N terminal IFRD PF05004.8 gi|219853286|ref|YP_002467718.1| - 1.5 7.8 7.3 7.5 5.5 0.1 3.1 3 1 1 4 4 4 0 Interferon-related developmental regulator (IFRD) TPP_enzyme_C PF02775.16 gi|219853287|ref|YP_002467719.1| - 8.4e-10 38.4 0.0 5.5e-09 35.7 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|219853287|ref|YP_002467719.1| - 2.7e-07 30.2 0.0 4.5e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PALP PF00291.20 gi|219853288|ref|YP_002467720.1| - 2.3e-19 69.7 2.3 3.9e-19 69.0 1.6 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF39 PF01837.11 gi|219853289|ref|YP_002467721.1| - 4.1e-112 374.1 0.0 4.7e-112 373.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4 PF00037.22 gi|219853289|ref|YP_002467721.1| - 1.1e-08 34.3 14.8 3.3e-07 29.6 2.4 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|219853289|ref|YP_002467721.1| - 1.5e-08 34.1 11.2 3.6e-06 26.5 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|219853289|ref|YP_002467721.1| - 8.3e-08 31.7 13.9 8.7e-06 25.3 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219853289|ref|YP_002467721.1| - 8.2e-07 28.7 6.3 3.9e-05 23.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|219853289|ref|YP_002467721.1| - 1.1e-06 28.3 12.6 3.9e-06 26.5 9.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219853289|ref|YP_002467721.1| - 2.7e-05 24.4 15.3 0.00027 21.2 10.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|219853289|ref|YP_002467721.1| - 0.00021 21.3 10.8 0.0018 18.4 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|219853289|ref|YP_002467721.1| - 0.00089 19.4 13.6 0.0035 17.5 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853289|ref|YP_002467721.1| - 0.0036 17.6 7.4 0.066 13.5 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|219853289|ref|YP_002467721.1| - 0.0043 17.0 13.0 0.013 15.4 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|219853289|ref|YP_002467721.1| - 0.011 16.4 10.7 0.13 13.0 1.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|219853289|ref|YP_002467721.1| - 0.018 15.6 2.2 0.018 15.6 1.5 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|219853289|ref|YP_002467721.1| - 0.031 14.6 3.7 0.031 14.6 2.6 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|219853289|ref|YP_002467721.1| - 0.18 12.2 13.8 0.42 11.0 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|219853289|ref|YP_002467721.1| - 0.44 10.4 6.5 0.89 9.4 4.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|219853289|ref|YP_002467721.1| - 2 9.1 19.4 0.15 12.7 4.0 3.1 2 0 0 2 2 2 0 4Fe-4S binding domain FeS PF04060.8 gi|219853290|ref|YP_002467722.1| - 6.3e-06 25.6 2.3 1.2e-05 24.7 1.6 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|219853291|ref|YP_002467723.1| - 9.7e-14 51.1 0.0 1.3e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|219853291|ref|YP_002467723.1| - 0.00017 20.7 0.0 0.00028 20.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin PduV-EutP PF10662.4 gi|219853291|ref|YP_002467723.1| - 0.00028 20.3 0.0 0.0083 15.6 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|219853291|ref|YP_002467723.1| - 0.00062 18.6 0.3 0.17 10.6 0.1 2.3 2 1 0 2 2 2 2 ArgK protein AAA_14 PF13173.1 gi|219853291|ref|YP_002467723.1| - 0.00069 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|219853291|ref|YP_002467723.1| - 0.0013 18.0 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|219853291|ref|YP_002467723.1| - 0.0057 16.6 0.0 0.02 14.9 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|219853291|ref|YP_002467723.1| - 0.0098 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|219853291|ref|YP_002467723.1| - 0.016 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|219853291|ref|YP_002467723.1| - 0.019 15.0 0.0 0.058 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|219853291|ref|YP_002467723.1| - 0.024 15.4 0.0 0.046 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|219853291|ref|YP_002467723.1| - 0.025 14.3 0.0 0.086 12.6 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|219853291|ref|YP_002467723.1| - 0.037 13.7 0.0 0.1 12.2 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|219853291|ref|YP_002467723.1| - 0.093 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|219853291|ref|YP_002467723.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|219853292|ref|YP_002467724.1| - 1.7e-11 44.5 0.0 2.5e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|219853292|ref|YP_002467724.1| - 1.2e-07 32.0 0.0 0.0018 18.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|219853292|ref|YP_002467724.1| - 1.4e-05 24.4 0.0 2.4e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|219853292|ref|YP_002467724.1| - 0.0012 19.0 0.0 0.0032 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|219853292|ref|YP_002467724.1| - 0.0027 17.7 0.0 0.0053 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|219853292|ref|YP_002467724.1| - 0.0052 16.2 0.1 0.017 14.5 0.0 1.8 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|219853292|ref|YP_002467724.1| - 0.0063 16.0 0.2 0.067 12.7 0.1 2.4 1 1 1 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|219853292|ref|YP_002467724.1| - 0.018 14.2 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DEAD PF00270.24 gi|219853292|ref|YP_002467724.1| - 0.024 14.1 0.0 0.066 12.7 0.0 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|219853292|ref|YP_002467724.1| - 0.026 14.1 0.0 0.045 13.4 0.0 1.4 1 1 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|219853292|ref|YP_002467724.1| - 0.035 14.0 0.2 0.12 12.3 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|219853292|ref|YP_002467724.1| - 0.039 13.8 0.0 5.7 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|219853292|ref|YP_002467724.1| - 0.052 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|219853292|ref|YP_002467724.1| - 0.055 12.6 0.1 0.18 11.0 0.0 1.8 2 1 1 3 3 3 0 PhoH-like protein AAA_35 PF14516.1 gi|219853292|ref|YP_002467724.1| - 0.057 12.0 0.0 0.084 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|219853292|ref|YP_002467724.1| - 0.058 13.1 0.1 0.16 11.7 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|219853292|ref|YP_002467724.1| - 0.061 13.0 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase DUF2379 PF09543.5 gi|219853292|ref|YP_002467724.1| - 0.076 12.9 0.1 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) AAA_23 PF13476.1 gi|219853292|ref|YP_002467724.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.17 gi|219853293|ref|YP_002467725.1| - 3.5e-08 33.1 0.1 8.2e-08 31.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_26 PF13443.1 gi|219853293|ref|YP_002467725.1| - 2.2e-06 27.7 0.0 4.2e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|219853293|ref|YP_002467725.1| - 7.9e-06 25.9 0.2 1.5e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|219853293|ref|YP_002467725.1| - 8.2e-06 25.7 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|219853293|ref|YP_002467725.1| - 0.00089 18.7 0.1 0.0037 16.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|219853293|ref|YP_002467725.1| - 0.013 15.1 0.1 0.17 11.5 0.0 2.3 2 0 0 2 2 2 0 MarR family PrpR_N PF06506.6 gi|219853293|ref|YP_002467725.1| - 0.017 14.5 0.1 0.035 13.5 0.0 1.5 2 0 0 2 2 2 0 Propionate catabolism activator TrmB PF01978.14 gi|219853293|ref|YP_002467725.1| - 0.04 13.6 0.0 0.098 12.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TetR_N PF00440.18 gi|219853293|ref|YP_002467725.1| - 0.048 13.3 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|219853293|ref|YP_002467725.1| - 0.064 12.6 0.0 0.37 10.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|219853293|ref|YP_002467725.1| - 0.087 13.0 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MtN3_slv PF03083.11 gi|219853294|ref|YP_002467726.1| - 0.0015 18.3 0.5 0.0015 18.3 0.3 1.0 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.9 gi|219853295|ref|YP_002467727.1| - 0.0054 16.2 0.5 0.006 16.1 0.4 1.1 1 0 0 1 1 1 1 PQ loop repeat AP_endonuc_2 PF01261.19 gi|219853296|ref|YP_002467728.1| - 2.1e-07 30.4 0.2 2.7e-07 30.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1614 PF07758.6 gi|219853297|ref|YP_002467729.1| - 2.3e-51 174.0 13.0 3.3e-51 173.5 9.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) PNTB PF02233.11 gi|219853297|ref|YP_002467729.1| - 0.00092 18.1 1.3 0.00092 18.1 0.9 1.4 2 0 0 2 2 2 1 NAD(P) transhydrogenase beta subunit Fibrillarin PF01269.12 gi|219853298|ref|YP_002467730.1| - 3.2e-58 196.3 0.0 3.9e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.7 gi|219853298|ref|YP_002467730.1| - 0.0044 15.9 0.0 0.0051 15.7 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase DUF3123 PF11321.3 gi|219853298|ref|YP_002467730.1| - 0.067 13.4 2.4 0.14 12.4 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3123) Nop PF01798.13 gi|219853299|ref|YP_002467731.1| - 1.9e-41 140.8 0.0 3.7e-41 139.9 0.0 1.4 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|219853299|ref|YP_002467731.1| - 0.00016 21.3 0.0 0.00032 20.4 0.0 1.5 1 0 0 1 1 1 1 NOSIC (NUC001) domain TctA PF01970.11 gi|219853300|ref|YP_002467732.1| - 1.2e-55 188.7 44.0 1.4e-55 188.4 30.5 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family CD20 PF04103.10 gi|219853300|ref|YP_002467732.1| - 0.014 15.3 4.6 0.014 15.3 3.2 2.6 2 0 0 2 2 2 0 CD20-like family DUF2769 PF10967.3 gi|219853301|ref|YP_002467733.1| - 1e-12 48.1 14.9 1.4e-12 47.6 10.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY-C PF15616.1 gi|219853301|ref|YP_002467733.1| - 0.0038 17.1 12.4 0.015 15.2 8.6 1.7 1 1 0 1 1 1 1 TerY-C metal binding domain PAAR_motif PF05488.8 gi|219853301|ref|YP_002467733.1| - 0.22 11.5 7.0 0.9 9.5 2.8 2.1 1 1 1 2 2 2 0 PAAR motif HEM4 PF02602.10 gi|219853302|ref|YP_002467734.1| - 2.4e-17 62.9 0.0 3.3e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TruB_N PF01509.13 gi|219853303|ref|YP_002467735.1| - 8.4e-23 81.1 0.1 2.4e-19 69.9 0.1 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|219853303|ref|YP_002467735.1| - 5.3e-12 45.2 1.9 9.7e-12 44.4 1.3 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|219853303|ref|YP_002467735.1| - 2.7e-06 27.1 0.1 5.1e-06 26.3 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain bPH_6 PF10756.4 gi|219853303|ref|YP_002467735.1| - 0.035 14.0 1.5 0.2 11.5 0.1 2.8 3 0 0 3 3 3 0 Bacterial PH domain Peptidase_C1 PF00112.18 gi|219853304|ref|YP_002467736.1| - 4.8e-11 42.9 1.9 2.6e-10 40.5 1.3 1.9 1 1 0 1 1 1 1 Papain family cysteine protease EF-hand_6 PF13405.1 gi|219853304|ref|YP_002467736.1| - 0.001 18.7 1.6 0.18 11.7 0.1 2.6 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.27 gi|219853304|ref|YP_002467736.1| - 0.034 13.4 0.4 0.034 13.4 0.2 2.8 3 0 0 3 3 3 0 EF hand EF-hand_7 PF13499.1 gi|219853304|ref|YP_002467736.1| - 0.13 12.3 2.4 2.1 8.5 1.7 2.6 1 1 0 1 1 1 0 EF-hand domain pair EF-hand_8 PF13833.1 gi|219853304|ref|YP_002467736.1| - 0.25 10.9 3.3 0.99 9.0 0.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|219853304|ref|YP_002467736.1| - 0.31 10.4 5.9 0.66 9.4 0.8 2.7 2 0 0 2 2 2 0 EF hand DUF1211 PF06736.6 gi|219853305|ref|YP_002467737.1| - 2.8e-25 88.2 3.4 5.3e-25 87.4 2.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1211) DUF3611 PF12263.3 gi|219853305|ref|YP_002467737.1| - 0.00076 18.9 5.7 0.0013 18.1 3.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3611) Response_reg PF00072.19 gi|219853306|ref|YP_002467738.1| - 1e-20 73.8 0.0 2.2e-20 72.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|219853306|ref|YP_002467738.1| - 7.4e-15 55.2 0.0 2.3e-12 47.2 0.0 2.7 2 1 1 3 3 3 1 PAS domain PAS PF00989.19 gi|219853306|ref|YP_002467738.1| - 2e-09 37.1 0.1 9.1e-06 25.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|219853306|ref|YP_002467738.1| - 1.6e-07 30.9 0.1 0.00025 20.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|219853306|ref|YP_002467738.1| - 2e-07 31.0 2.1 9.2e-06 25.6 0.1 3.2 3 0 0 3 3 3 1 PAS fold MFS_1 PF07690.11 gi|219853307|ref|YP_002467739.1| - 3.3e-57 193.8 39.2 1.2e-36 126.1 12.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|219853307|ref|YP_002467739.1| - 1.6e-18 66.5 20.9 6.6e-13 48.0 0.9 2.3 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|219853307|ref|YP_002467739.1| - 1.3e-12 46.8 18.6 5.2e-12 44.9 12.9 1.9 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|219853307|ref|YP_002467739.1| - 4.2e-12 44.9 22.2 9.7e-07 27.2 3.7 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|219853307|ref|YP_002467739.1| - 2e-07 30.6 4.4 0.0024 17.6 0.1 3.4 3 0 0 3 3 3 2 MFS_1 like family PUCC PF03209.10 gi|219853307|ref|YP_002467739.1| - 0.00083 18.1 5.7 0.00083 18.1 4.0 2.9 2 1 0 2 2 2 1 PUCC protein TRI12 PF06609.8 gi|219853307|ref|YP_002467739.1| - 0.0029 15.8 8.0 0.016 13.4 1.5 2.4 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Folate_carrier PF01770.13 gi|219853307|ref|YP_002467739.1| - 0.1 11.0 1.4 0.21 10.0 0.2 1.7 1 1 1 2 2 2 0 Reduced folate carrier ATG22 PF11700.3 gi|219853307|ref|YP_002467739.1| - 2.7 6.3 25.2 1.1 7.7 3.6 2.8 2 2 0 2 2 2 0 Vacuole effluxer Atg22 like POR PF01558.13 gi|219853308|ref|YP_002467740.1| - 1.4e-35 122.7 0.1 1.6e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|219853309|ref|YP_002467741.1| - 2.9e-29 101.6 0.4 5.1e-29 100.8 0.3 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|219853309|ref|YP_002467741.1| - 4.8e-10 39.3 0.0 1.9e-09 37.3 0.0 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|219853309|ref|YP_002467741.1| - 2.6e-08 33.1 11.2 2.7e-05 23.5 3.4 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|219853309|ref|YP_002467741.1| - 4.8e-07 29.4 7.5 1.4e-06 27.9 5.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|219853309|ref|YP_002467741.1| - 8.8e-06 26.0 11.5 3.3e-05 24.1 8.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|219853309|ref|YP_002467741.1| - 5.6e-05 22.8 18.7 0.00021 21.0 2.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|219853309|ref|YP_002467741.1| - 7.1e-05 22.8 18.1 0.0018 18.4 1.8 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|219853309|ref|YP_002467741.1| - 7.4e-05 22.5 11.3 0.0026 17.5 7.2 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|219853309|ref|YP_002467741.1| - 0.00085 19.5 11.3 0.00085 19.5 7.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|219853309|ref|YP_002467741.1| - 0.0041 16.9 2.3 0.0041 16.9 1.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain DXP_synthase_N PF13292.1 gi|219853309|ref|YP_002467741.1| - 0.013 14.4 0.2 0.16 10.8 0.4 2.1 1 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.1 gi|219853309|ref|YP_002467741.1| - 0.044 13.8 11.7 0.33 11.0 7.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|219853309|ref|YP_002467741.1| - 0.4 11.0 11.5 0.7 10.2 1.0 2.8 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|219853309|ref|YP_002467741.1| - 1.1 9.6 14.1 2.4 8.6 2.7 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|219853312|ref|YP_002467744.1| - 9.1e-20 71.4 0.0 1.7e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|219853312|ref|YP_002467744.1| - 7.9e-16 57.6 0.1 1.5e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|219853312|ref|YP_002467744.1| - 0.048 13.4 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 TRAM domain PAS_9 PF13426.1 gi|219853313|ref|YP_002467745.1| - 5.9e-21 74.8 0.1 0.00021 21.6 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|219853313|ref|YP_002467745.1| - 4.3e-19 68.5 0.0 4.9e-07 29.7 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|219853313|ref|YP_002467745.1| - 1.2e-17 63.0 0.5 4e-06 26.4 0.0 4.4 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|219853313|ref|YP_002467745.1| - 2e-14 53.3 0.1 1.8e-05 24.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|219853313|ref|YP_002467745.1| - 9.9e-08 31.9 2.2 0.0017 18.3 0.4 4.3 2 2 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|219853313|ref|YP_002467745.1| - 2.2e-07 30.8 0.1 5.6e-07 29.5 0.1 1.7 1 0 0 1 1 1 1 PAS fold HTH_20 PF12840.2 gi|219853313|ref|YP_002467745.1| - 0.016 14.9 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PAS_10 PF13596.1 gi|219853313|ref|YP_002467745.1| - 0.028 14.7 0.1 0.13 12.5 0.0 2.2 3 0 0 3 3 3 0 PAS domain TrmB PF01978.14 gi|219853313|ref|YP_002467745.1| - 0.078 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ABM PF03992.11 gi|219853314|ref|YP_002467746.1| - 4e-18 65.2 0.0 4.6e-18 65.0 0.0 1.0 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase F420_oxidored PF03807.12 gi|219853315|ref|YP_002467747.1| - 2.4e-15 56.7 0.6 3.8e-15 56.1 0.4 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|219853315|ref|YP_002467747.1| - 8.1e-06 25.9 0.2 1e-05 25.6 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding IlvN PF07991.7 gi|219853315|ref|YP_002467747.1| - 0.00065 19.0 0.4 0.001 18.4 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain adh_short PF00106.20 gi|219853315|ref|YP_002467747.1| - 0.0018 18.2 0.4 0.0029 17.5 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|219853315|ref|YP_002467747.1| - 0.0029 17.4 0.2 0.0049 16.7 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|219853315|ref|YP_002467747.1| - 0.0029 17.2 0.6 0.0042 16.7 0.4 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|219853315|ref|YP_002467747.1| - 0.004 16.6 0.3 0.0088 15.4 0.1 1.6 1 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|219853315|ref|YP_002467747.1| - 0.0071 16.0 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|219853315|ref|YP_002467747.1| - 0.064 12.4 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|219853315|ref|YP_002467747.1| - 0.085 12.0 0.2 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family ADH_zinc_N PF00107.21 gi|219853317|ref|YP_002467749.1| - 3.5e-17 62.1 0.4 6e-17 61.4 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|219853317|ref|YP_002467749.1| - 1.4e-14 53.7 0.0 3.6e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain HAD PF12710.2 gi|219853317|ref|YP_002467749.1| - 0.081 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Grp1_Fun34_YaaH PF01184.14 gi|219853319|ref|YP_002467751.1| - 4.6e-42 143.7 20.9 5.8e-42 143.3 14.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family CybS PF05328.7 gi|219853319|ref|YP_002467751.1| - 3.7 7.1 6.2 0.51 9.9 0.7 2.1 2 0 0 2 2 2 0 CybS DUF4293 PF14126.1 gi|219853319|ref|YP_002467751.1| - 8.1 6.3 9.7 1.9 8.3 3.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) DUF1894 PF08979.6 gi|219853322|ref|YP_002467754.1| - 0.11 12.5 0.1 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1894) DUF108 PF01958.13 gi|219853323|ref|YP_002467755.1| - 2.6e-32 110.8 0.0 4.6e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|219853323|ref|YP_002467755.1| - 1.7e-17 63.8 0.0 3.6e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|219853323|ref|YP_002467755.1| - 0.00021 21.8 0.0 0.00037 21.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|219853323|ref|YP_002467755.1| - 0.0023 17.8 0.0 0.0057 16.5 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus SF3a60_bindingd PF12108.3 gi|219853323|ref|YP_002467755.1| - 0.063 12.8 0.8 0.16 11.5 0.5 1.7 1 0 0 1 1 1 0 Splicing factor SF3a60 binding domain QRPTase_C PF01729.14 gi|219853324|ref|YP_002467756.1| - 3.6e-50 169.8 0.6 4.5e-50 169.4 0.4 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|219853324|ref|YP_002467756.1| - 4e-23 81.0 1.2 1.9e-22 78.8 0.0 2.4 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|219853324|ref|YP_002467756.1| - 0.031 13.3 0.1 0.079 12.0 0.0 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family zf-ribbon_3 PF13248.1 gi|219853325|ref|YP_002467757.1| - 2.1e-06 26.7 0.9 0.0098 15.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|219853325|ref|YP_002467757.1| - 0.00022 20.6 1.0 0.33 10.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|219853325|ref|YP_002467757.1| - 0.00027 20.1 0.3 0.47 9.8 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.2 gi|219853325|ref|YP_002467757.1| - 0.00061 19.5 0.1 0.0016 18.1 0.1 1.7 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|219853325|ref|YP_002467757.1| - 0.00067 19.2 3.2 0.0038 16.8 2.2 1.9 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|219853325|ref|YP_002467757.1| - 0.00089 18.7 0.4 0.34 10.4 0.0 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|219853325|ref|YP_002467757.1| - 0.0012 18.3 0.1 0.053 13.1 0.0 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|219853325|ref|YP_002467757.1| - 0.0018 17.9 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|219853325|ref|YP_002467757.1| - 0.0021 17.9 0.1 0.79 9.7 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zf-RING_3 PF14369.1 gi|219853325|ref|YP_002467757.1| - 0.0023 17.8 0.1 1.5 8.8 0.0 2.1 2 0 0 2 2 2 1 zinc-finger Prok-RING_1 PF14446.1 gi|219853325|ref|YP_002467757.1| - 0.0053 16.4 0.1 1.7 8.4 0.0 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|219853325|ref|YP_002467757.1| - 0.0056 16.4 1.0 0.46 10.3 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|219853325|ref|YP_002467757.1| - 0.0058 16.4 2.4 0.38 10.5 0.1 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|219853325|ref|YP_002467757.1| - 0.012 15.0 1.0 0.79 9.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.1 gi|219853325|ref|YP_002467757.1| - 0.013 15.8 0.2 0.68 10.4 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.14 gi|219853325|ref|YP_002467757.1| - 0.016 14.7 0.4 5.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|219853325|ref|YP_002467757.1| - 0.017 15.3 0.1 0.023 15.0 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|219853325|ref|YP_002467757.1| - 0.025 14.0 0.6 2.8 7.4 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_4 PF14447.1 gi|219853325|ref|YP_002467757.1| - 0.031 13.8 1.1 4.5 6.8 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Zn_ribbon_recom PF13408.1 gi|219853325|ref|YP_002467757.1| - 0.033 14.4 0.4 6.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.7 gi|219853325|ref|YP_002467757.1| - 0.034 13.8 0.5 3.8 7.2 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.1 gi|219853325|ref|YP_002467757.1| - 0.035 14.3 0.6 4.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Nudix_N_2 PF14803.1 gi|219853325|ref|YP_002467757.1| - 0.035 13.7 3.1 3 7.5 0.1 2.4 2 1 0 2 2 2 0 Nudix N-terminal zf-tcix PF14952.1 gi|219853325|ref|YP_002467757.1| - 0.038 13.3 0.6 4.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding ADK_lid PF05191.9 gi|219853325|ref|YP_002467757.1| - 0.039 13.6 0.7 7 6.4 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|219853325|ref|YP_002467757.1| - 0.039 13.8 0.7 7.6 6.4 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin DUF1610 PF07754.6 gi|219853325|ref|YP_002467757.1| - 0.055 13.5 3.3 2 8.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-HYPF PF07503.7 gi|219853325|ref|YP_002467757.1| - 0.071 12.5 1.5 5.8 6.4 0.1 2.2 2 0 0 2 2 2 0 HypF finger zf-ISL3 PF14690.1 gi|219853325|ref|YP_002467757.1| - 0.072 13.1 0.4 11 6.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF164 PF02591.10 gi|219853325|ref|YP_002467757.1| - 0.083 12.7 0.4 0.25 11.1 0.3 1.6 1 1 1 2 2 2 0 Putative zinc ribbon domain DUF4428 PF14471.1 gi|219853325|ref|YP_002467757.1| - 0.083 12.6 0.1 0.25 11.1 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) DNA_ligase_ZBD PF03119.11 gi|219853325|ref|YP_002467757.1| - 0.084 12.5 3.9 3.8 7.3 0.2 2.5 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain TFIIS_C PF01096.13 gi|219853325|ref|YP_002467757.1| - 0.098 12.3 0.1 8.1 6.1 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_6 PF13912.1 gi|219853325|ref|YP_002467757.1| - 0.11 12.4 0.9 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger RRN7 PF11781.3 gi|219853325|ref|YP_002467757.1| - 0.16 11.4 0.6 0.98 8.9 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF35_N PF12172.3 gi|219853325|ref|YP_002467757.1| - 0.17 11.8 1.0 13 5.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Auto_anti-p27 PF06677.7 gi|219853325|ref|YP_002467757.1| - 0.19 11.5 0.7 11 5.8 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|219853325|ref|YP_002467757.1| - 0.23 11.1 0.8 1.4 8.6 0.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-IS66 PF13005.2 gi|219853325|ref|YP_002467757.1| - 0.29 11.1 1.6 8.6 6.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.1 gi|219853325|ref|YP_002467757.1| - 0.31 10.2 1.4 1.2 8.4 1.1 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF650 PF04894.7 gi|219853326|ref|YP_002467758.1| - 1.2e-76 257.8 0.0 1.6e-76 257.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|219853326|ref|YP_002467758.1| - 2.7e-30 104.2 0.2 6e-30 103.1 0.1 1.6 2 0 0 2 2 2 1 Archaeal protein of unknown function (DUF651) DNA_ligase_A_M PF01068.16 gi|219853327|ref|YP_002467759.1| - 4.8e-44 150.1 0.0 7.6e-44 149.5 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|219853327|ref|YP_002467759.1| - 2.8e-42 144.5 0.0 1.1e-40 139.3 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|219853327|ref|YP_002467759.1| - 2.7e-19 69.3 0.0 7e-19 68.0 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|219853327|ref|YP_002467759.1| - 0.082 12.5 0.0 0.39 10.4 0.0 2.1 1 1 0 1 1 1 0 DNA ligase OB-like domain Tap-RNA_bind PF09162.5 gi|219853327|ref|YP_002467759.1| - 0.085 12.4 0.0 14 5.3 0.0 2.6 2 0 0 2 2 2 0 Tap, RNA-binding Lactamase_B PF00753.22 gi|219853328|ref|YP_002467760.1| - 8.9e-20 71.1 0.2 1.8e-19 70.1 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|219853328|ref|YP_002467760.1| - 1.3e-14 54.2 0.0 1.5e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|219853328|ref|YP_002467760.1| - 8.3e-07 28.8 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain P-II PF00543.17 gi|219853329|ref|YP_002467761.1| - 2.6e-37 127.3 0.7 3e-37 127.1 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|219853329|ref|YP_002467761.1| - 0.014 15.3 0.2 2.9 7.9 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF970) Ammonium_transp PF00909.16 gi|219853330|ref|YP_002467762.1| - 3.6e-126 420.8 40.3 4.1e-126 420.6 27.9 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family HPP PF04982.8 gi|219853331|ref|YP_002467763.1| - 0.44 10.3 3.9 0.68 9.7 2.2 1.7 1 1 0 1 1 1 0 HPP family TerC PF03741.11 gi|219853331|ref|YP_002467763.1| - 0.5 9.7 7.8 0.3 10.5 2.4 1.9 2 0 0 2 2 2 0 Integral membrane protein TerC family 7TMR-DISM_7TM PF07695.6 gi|219853331|ref|YP_002467763.1| - 1.1 8.8 10.5 0.61 9.7 2.6 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling SdpI PF13630.1 gi|219853331|ref|YP_002467763.1| - 3.1 7.5 7.7 3.3 7.4 1.6 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF4231 PF14015.1 gi|219853331|ref|YP_002467763.1| - 3.6 7.6 8.0 20 5.2 5.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF202 PF02656.10 gi|219853331|ref|YP_002467763.1| - 4.2 7.6 9.2 14 6.0 1.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Ammonium_transp PF00909.16 gi|219853332|ref|YP_002467764.1| - 3.2e-126 421.0 39.4 3.6e-126 420.8 27.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Nuc_deoxyrib_tr PF05014.10 gi|219853333|ref|YP_002467765.1| - 2.5e-27 94.9 0.0 1.1e-26 92.9 0.0 1.8 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase DUF523 PF04463.7 gi|219853333|ref|YP_002467765.1| - 2.5e-09 37.0 0.0 4.9e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF523) MspA PF09203.6 gi|219853333|ref|YP_002467765.1| - 0.032 13.6 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 MspA DUF367 PF04034.8 gi|219853334|ref|YP_002467766.1| - 2.4e-41 140.3 0.0 2.9e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|219853334|ref|YP_002467766.1| - 1.6e-08 33.9 0.2 2.6e-08 33.2 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DUF4006 PF13179.1 gi|219853335|ref|YP_002467767.1| - 0.092 12.3 0.1 0.093 12.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) Gp_dh_C PF02800.15 gi|219853336|ref|YP_002467768.1| - 4.3e-22 78.2 0.1 7.4e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|219853336|ref|YP_002467768.1| - 3.4e-19 69.2 0.2 2.6e-18 66.4 0.0 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|219853336|ref|YP_002467768.1| - 4.7e-12 45.9 1.2 1.4e-11 44.3 0.1 2.4 3 1 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|219853336|ref|YP_002467768.1| - 1.3e-06 28.7 0.1 8e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|219853336|ref|YP_002467768.1| - 5.7e-05 22.3 0.1 0.0062 15.7 0.0 2.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|219853336|ref|YP_002467768.1| - 7.5e-05 23.2 0.1 0.00042 20.8 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|219853336|ref|YP_002467768.1| - 0.00012 22.4 0.6 0.0043 17.4 0.0 2.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|219853336|ref|YP_002467768.1| - 0.00095 18.2 0.1 0.0016 17.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|219853336|ref|YP_002467768.1| - 0.0052 16.7 1.3 0.015 15.2 0.0 2.4 2 1 1 3 3 3 1 TrkA-N domain F420_oxidored PF03807.12 gi|219853336|ref|YP_002467768.1| - 0.017 15.5 0.1 0.058 13.8 0.1 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent tRNA-synt_1b PF00579.20 gi|219853337|ref|YP_002467769.1| - 8.4e-50 169.5 0.0 1e-49 169.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|219853337|ref|YP_002467769.1| - 0.014 14.0 0.0 1 7.9 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) RIO1 PF01163.17 gi|219853338|ref|YP_002467770.1| - 1.1e-56 191.1 0.0 1.5e-56 190.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|219853338|ref|YP_002467770.1| - 0.0081 15.2 0.0 0.33 9.9 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|219853338|ref|YP_002467770.1| - 0.012 15.4 0.0 0.93 9.1 0.0 2.5 1 1 0 2 2 2 0 Phosphotransferase enzyme family KH_1 PF00013.24 gi|219853339|ref|YP_002467771.1| - 1.1e-16 60.2 6.1 1.9e-08 33.8 1.3 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|219853339|ref|YP_002467771.1| - 1.2e-08 34.4 6.5 4.5e-05 22.9 0.1 2.6 3 0 0 3 3 3 2 KH domain KH_2 PF07650.12 gi|219853339|ref|YP_002467771.1| - 0.00018 21.0 1.2 0.15 11.6 0.2 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|219853339|ref|YP_002467771.1| - 0.0018 17.8 3.2 0.98 9.1 0.1 2.8 2 1 1 3 3 3 2 KH domain DEAD PF00270.24 gi|219853340|ref|YP_002467772.1| - 2.1e-27 95.6 0.0 4.9e-27 94.4 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|219853340|ref|YP_002467772.1| - 1.6e-08 34.2 0.0 4.4e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Sec63 PF02889.11 gi|219853340|ref|YP_002467772.1| - 0.00014 21.2 0.0 0.0002 20.7 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.10 gi|219853340|ref|YP_002467772.1| - 0.00074 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|219853340|ref|YP_002467772.1| - 0.011 15.9 0.0 0.032 14.4 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain CGI-121 PF08617.5 gi|219853341|ref|YP_002467773.1| - 9.3e-13 48.1 0.0 1.1e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MoeZ_MoeB PF05237.8 gi|219853341|ref|YP_002467773.1| - 0.036 13.6 0.2 0.17 11.4 0.1 1.9 2 0 0 2 2 2 0 MoeZ/MoeB domain MoCF_biosynth PF00994.19 gi|219853342|ref|YP_002467774.1| - 1e-32 112.4 0.1 1.2e-32 112.2 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain